Query 006816
Match_columns 630
No_of_seqs 348 out of 2619
Neff 8.0
Searched_HMMs 46136
Date Thu Mar 28 14:54:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006816.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006816hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0021 TktA Transketolase [Ca 100.0 1E-133 2E-138 1071.3 61.5 621 1-629 15-663 (663)
2 PRK12754 transketolase; Review 100.0 3E-125 7E-130 1058.0 64.5 618 1-628 13-663 (663)
3 PRK12753 transketolase; Review 100.0 3E-123 7E-128 1049.6 62.4 615 2-628 14-663 (663)
4 PLN02790 transketolase 100.0 9E-122 2E-126 1039.2 66.0 620 2-628 4-654 (654)
5 TIGR00232 tktlase_bact transke 100.0 3E-121 7E-126 1034.5 66.1 616 2-628 10-653 (653)
6 PTZ00089 transketolase; Provis 100.0 1E-119 3E-124 1022.3 63.8 616 2-630 16-660 (661)
7 KOG0523 Transketolase [Carbohy 100.0 2E-114 5E-119 911.7 47.7 592 2-629 20-626 (632)
8 PRK05899 transketolase; Review 100.0 1E-106 3E-111 918.2 65.2 598 2-628 18-624 (624)
9 COG1154 Dxs Deoxyxylulose-5-ph 100.0 3E-102 7E-107 825.3 48.0 533 3-629 33-623 (627)
10 TIGR00204 dxs 1-deoxy-D-xylulo 100.0 3E-101 6E-106 867.0 54.5 532 2-628 28-616 (617)
11 PLN02582 1-deoxy-D-xylulose-5- 100.0 7E-101 2E-105 858.7 53.7 535 2-629 61-667 (677)
12 PRK05444 1-deoxy-D-xylulose-5- 100.0 2.7E-99 6E-104 850.7 52.2 531 2-628 34-580 (580)
13 PRK12571 1-deoxy-D-xylulose-5- 100.0 1.7E-98 4E-103 846.4 54.4 533 2-629 36-628 (641)
14 PLN02225 1-deoxy-D-xylulose-5- 100.0 1.2E-98 3E-103 832.6 49.2 514 3-629 107-691 (701)
15 TIGR03186 AKGDH_not_PDH alpha- 100.0 1.1E-96 2E-101 832.6 58.1 608 2-629 85-859 (889)
16 PRK13012 2-oxoacid dehydrogena 100.0 2E-95 4E-100 826.5 59.1 610 2-629 99-867 (896)
17 PLN02234 1-deoxy-D-xylulose-5- 100.0 2.2E-96 5E-101 815.3 48.6 489 3-585 95-611 (641)
18 PRK12315 1-deoxy-D-xylulose-5- 100.0 4E-95 9E-100 812.8 52.8 530 3-629 31-581 (581)
19 PRK09405 aceE pyruvate dehydro 100.0 2E-91 4.3E-96 790.2 56.5 612 2-629 91-862 (891)
20 TIGR00759 aceE pyruvate dehydr 100.0 2.2E-74 4.8E-79 642.6 54.6 615 2-629 85-856 (885)
21 COG3958 Transketolase, C-termi 100.0 7.2E-68 1.6E-72 517.6 28.0 295 315-628 6-312 (312)
22 PF00456 Transketolase_N: Tran 100.0 5.2E-66 1.1E-70 536.1 26.1 295 2-299 11-332 (332)
23 PRK05261 putative phosphoketol 100.0 3.8E-63 8.3E-68 554.3 50.2 575 2-627 39-740 (785)
24 COG3959 Transketolase, N-termi 100.0 4.5E-59 9.7E-64 438.9 23.6 222 3-238 21-243 (243)
25 COG2609 AceE Pyruvate dehydrog 100.0 5E-55 1.1E-59 464.6 48.1 605 12-629 104-858 (887)
26 CHL00144 odpB pyruvate dehydro 100.0 1.7E-54 3.6E-59 452.2 28.2 293 315-629 3-324 (327)
27 PLN02683 pyruvate dehydrogenas 100.0 1.5E-53 3.3E-58 449.0 30.2 303 308-629 19-351 (356)
28 PRK11892 pyruvate dehydrogenas 100.0 2.1E-53 4.5E-58 459.8 30.4 291 315-629 141-463 (464)
29 PRK09212 pyruvate dehydrogenas 100.0 2E-53 4.4E-58 445.0 27.6 295 315-630 3-325 (327)
30 PTZ00182 3-methyl-2-oxobutanat 100.0 2.1E-51 4.5E-56 432.6 28.6 295 314-628 33-355 (355)
31 cd02017 TPP_E1_EcPDC_like Thia 100.0 3.2E-51 7E-56 424.7 26.4 230 2-243 14-323 (386)
32 COG0022 AcoB Pyruvate/2-oxoglu 100.0 1E-50 2.2E-55 400.0 24.6 295 316-629 2-323 (324)
33 cd02012 TPP_TK Thiamine pyroph 100.0 4E-49 8.6E-54 400.8 27.0 230 2-246 6-236 (255)
34 PRK09404 sucA 2-oxoglutarate d 100.0 4.1E-43 9E-48 402.1 45.0 461 102-584 313-874 (924)
35 TIGR00239 2oxo_dh_E1 2-oxoglut 100.0 2.1E-42 4.5E-47 394.2 44.3 464 98-583 310-879 (929)
36 cd02007 TPP_DXS Thiamine pyrop 100.0 1.4E-43 2.9E-48 344.6 21.7 195 12-242 1-195 (195)
37 KOG0524 Pyruvate dehydrogenase 100.0 1E-41 2.2E-46 327.0 19.4 294 314-628 33-358 (359)
38 PF13292 DXP_synthase_N: 1-deo 100.0 1.6E-40 3.4E-45 325.2 14.9 202 3-235 29-270 (270)
39 cd07033 TPP_PYR_DXS_TK_like Py 100.0 2.3E-37 5E-42 291.0 16.1 154 321-484 2-156 (156)
40 COG3957 Phosphoketolase [Carbo 100.0 9.6E-34 2.1E-38 304.2 28.9 506 5-552 53-664 (793)
41 PF02779 Transket_pyr: Transke 100.0 1.3E-34 2.8E-39 278.5 11.5 168 314-487 1-175 (178)
42 cd07036 TPP_PYR_E1-PDHc-beta_l 100.0 4.9E-34 1.1E-38 269.6 14.6 155 321-484 2-167 (167)
43 KOG0525 Branched chain alpha-k 100.0 9.6E-34 2.1E-38 268.0 14.0 292 314-629 39-361 (362)
44 smart00861 Transket_pyr Transk 100.0 7.5E-32 1.6E-36 257.2 18.0 162 317-485 1-167 (168)
45 cd02011 TPP_PK Thiamine pyroph 99.9 4.8E-26 1E-30 222.2 17.1 172 52-241 2-208 (227)
46 CHL00149 odpA pyruvate dehydro 99.9 1.9E-24 4E-29 227.3 23.6 157 97-261 122-284 (341)
47 cd02000 TPP_E1_PDC_ADC_BCADC T 99.9 2.3E-24 5.1E-29 223.4 22.1 191 45-261 48-254 (293)
48 COG1071 AcoA Pyruvate/2-oxoglu 99.9 1.3E-24 2.8E-29 224.2 18.6 151 97-261 130-287 (358)
49 PLN02374 pyruvate dehydrogenas 99.9 1.1E-23 2.3E-28 226.2 25.0 157 97-261 188-350 (433)
50 TIGR03182 PDH_E1_alph_y pyruva 99.9 1.7E-23 3.7E-28 218.4 22.6 189 48-261 56-259 (315)
51 PF00676 E1_dh: Dehydrogenase 99.9 4.3E-23 9.4E-28 213.8 21.6 149 97-260 95-250 (300)
52 TIGR03181 PDH_E1_alph_x pyruva 99.9 1.3E-22 2.7E-27 214.0 24.5 191 45-261 75-272 (341)
53 PLN02269 Pyruvate dehydrogenas 99.9 2.8E-22 6.1E-27 211.3 23.1 187 49-260 85-284 (362)
54 cd02016 TPP_E1_OGDC_like Thiam 99.8 8.3E-19 1.8E-23 175.8 19.0 140 98-246 108-255 (265)
55 PF09364 XFP_N: XFP N-terminal 99.8 3.2E-19 7E-24 181.4 14.2 214 3-242 38-286 (379)
56 KOG0225 Pyruvate dehydrogenase 99.8 3.3E-19 7.1E-24 177.2 13.5 149 95-259 157-311 (394)
57 cd00568 TPP_enzymes Thiamine p 99.8 2.2E-18 4.7E-23 164.2 14.4 146 44-235 12-168 (168)
58 cd02004 TPP_BZL_OCoD_HPCL Thia 99.8 3E-18 6.5E-23 164.1 12.8 113 102-235 47-171 (172)
59 KOG1182 Branched chain alpha-k 99.8 7E-19 1.5E-23 173.1 8.0 151 98-261 188-344 (432)
60 cd02008 TPP_IOR_alpha Thiamine 99.7 7.4E-18 1.6E-22 162.2 12.5 117 101-235 49-176 (178)
61 cd03371 TPP_PpyrDC Thiamine py 99.7 3.8E-17 8.3E-22 158.3 15.3 119 100-239 45-166 (188)
62 cd02013 TPP_Xsc_like Thiamine 99.7 2.7E-17 5.9E-22 160.7 14.0 119 101-239 51-182 (196)
63 cd02003 TPP_IolD Thiamine pyro 99.7 1.1E-17 2.4E-22 164.6 11.3 118 101-239 46-187 (205)
64 PRK06163 hypothetical protein; 99.7 4.7E-17 1E-21 158.8 15.5 136 102-261 56-195 (202)
65 cd02001 TPP_ComE_PpyrDC Thiami 99.7 4.2E-17 9.1E-22 153.4 11.9 114 102-237 41-156 (157)
66 cd02015 TPP_AHAS Thiamine pyro 99.7 4.5E-17 9.8E-22 157.9 12.0 116 102-238 49-176 (186)
67 cd02006 TPP_Gcl Thiamine pyrop 99.7 3E-17 6.4E-22 161.3 10.6 119 101-239 55-197 (202)
68 cd02010 TPP_ALS Thiamine pyrop 99.7 1.3E-16 2.8E-21 153.3 12.8 116 101-237 46-171 (177)
69 TIGR03846 sulfopy_beta sulfopy 99.7 2.9E-16 6.3E-21 151.1 14.9 115 102-239 41-159 (181)
70 cd02002 TPP_BFDC Thiamine pyro 99.7 7.8E-17 1.7E-21 155.2 10.3 112 103-235 49-178 (178)
71 cd02005 TPP_PDC_IPDC Thiamine 99.7 2.3E-16 4.9E-21 152.4 12.5 118 101-238 48-176 (183)
72 TIGR03297 Ppyr-DeCO2ase phosph 99.7 1E-15 2.3E-20 161.9 18.4 129 84-239 208-339 (361)
73 cd03372 TPP_ComE Thiamine pyro 99.7 5.9E-16 1.3E-20 148.9 14.8 115 102-239 41-158 (179)
74 PF02775 TPP_enzyme_C: Thiamin 99.7 1.1E-16 2.4E-21 150.3 9.3 115 100-233 25-153 (153)
75 PF02780 Transketolase_C: Tran 99.7 2.3E-17 5E-22 149.2 2.9 110 502-620 1-124 (124)
76 cd02009 TPP_SHCHC_synthase Thi 99.7 3.5E-16 7.6E-21 150.1 11.1 112 102-235 50-174 (175)
77 cd02014 TPP_POX Thiamine pyrop 99.7 4.2E-16 9.2E-21 150.0 11.7 116 101-237 49-174 (178)
78 cd03375 TPP_OGFOR Thiamine pyr 99.6 3E-15 6.4E-20 145.8 12.2 114 103-237 51-185 (193)
79 COG0028 IlvB Thiamine pyrophos 99.6 2.8E-15 6.1E-20 167.4 11.5 118 100-238 405-533 (550)
80 PRK12474 hypothetical protein; 99.6 4E-15 8.8E-20 166.8 11.4 113 102-235 388-518 (518)
81 PRK07586 hypothetical protein; 99.6 6.4E-15 1.4E-19 165.2 11.0 112 102-234 384-513 (514)
82 PRK06154 hypothetical protein; 99.6 1.1E-14 2.3E-19 164.7 12.5 118 102-239 430-558 (565)
83 TIGR01504 glyox_carbo_lig glyo 99.6 6.5E-15 1.4E-19 167.3 10.5 117 102-238 417-557 (588)
84 TIGR02418 acolac_catab acetola 99.6 1E-14 2.3E-19 164.5 11.9 117 101-238 406-532 (539)
85 TIGR03393 indolpyr_decarb indo 99.6 1.3E-14 2.7E-19 163.7 11.6 115 101-236 402-527 (539)
86 PRK08266 hypothetical protein; 99.6 1.1E-14 2.4E-19 164.3 11.3 117 102-239 401-528 (542)
87 PRK09124 pyruvate dehydrogenas 99.6 2E-14 4.3E-19 163.3 13.3 118 101-239 406-533 (574)
88 PRK09107 acetolactate synthase 99.6 1.1E-14 2.3E-19 165.7 11.1 116 102-238 429-556 (595)
89 cd03376 TPP_PFOR_porB_like Thi 99.6 2.2E-14 4.8E-19 143.7 12.0 119 101-237 60-201 (235)
90 PRK06965 acetolactate synthase 99.6 1.2E-14 2.7E-19 165.2 11.5 118 102-239 436-565 (587)
91 PRK08979 acetolactate synthase 99.6 1.2E-14 2.7E-19 164.8 11.0 116 102-237 420-547 (572)
92 PRK07524 hypothetical protein; 99.5 2.1E-14 4.6E-19 161.8 12.6 117 102-239 406-532 (535)
93 PRK06457 pyruvate dehydrogenas 99.5 1.6E-14 3.5E-19 163.1 11.3 116 101-237 394-520 (549)
94 PRK05858 hypothetical protein; 99.5 1.9E-14 4E-19 162.4 11.4 116 102-238 406-532 (542)
95 PRK12270 kgd alpha-ketoglutara 99.5 1.2E-11 2.7E-16 139.1 33.4 460 107-584 623-1178(1228)
96 PRK06546 pyruvate dehydrogenas 99.5 4.2E-14 9.1E-19 160.5 14.1 117 101-238 406-532 (578)
97 PRK06456 acetolactate synthase 99.5 1.9E-14 4.1E-19 163.5 11.0 116 102-238 420-547 (572)
98 PRK07418 acetolactate synthase 99.5 2.2E-14 4.7E-19 164.1 11.5 116 102-238 433-561 (616)
99 PRK07979 acetolactate synthase 99.5 2E-14 4.4E-19 163.2 11.2 116 102-237 420-549 (574)
100 PRK06466 acetolactate synthase 99.5 2.2E-14 4.9E-19 162.8 11.4 118 102-239 422-551 (574)
101 PLN02470 acetolactate synthase 99.5 2E-14 4.4E-19 163.4 11.0 115 102-237 425-558 (585)
102 PLN02573 pyruvate decarboxylas 99.5 2.9E-14 6.2E-19 161.6 12.1 116 101-236 426-552 (578)
103 PRK08611 pyruvate oxidase; Pro 99.5 2.4E-14 5.2E-19 162.5 11.4 117 102-239 407-533 (576)
104 PRK07092 benzoylformate decarb 99.5 2.9E-14 6.2E-19 160.5 11.9 114 101-235 405-529 (530)
105 PRK07064 hypothetical protein; 99.5 1.9E-14 4.1E-19 162.6 10.3 114 102-236 404-528 (544)
106 PRK06048 acetolactate synthase 99.5 2.7E-14 5.9E-19 161.7 11.4 115 103-238 414-540 (561)
107 PRK06725 acetolactate synthase 99.5 3.5E-14 7.7E-19 160.7 12.2 115 102-237 421-546 (570)
108 PRK11269 glyoxylate carboligas 99.5 2.3E-14 4.9E-19 163.3 10.5 117 102-238 418-558 (591)
109 PRK06112 acetolactate synthase 99.5 5.4E-14 1.2E-18 159.9 13.4 115 102-237 436-561 (578)
110 TIGR02720 pyruv_oxi_spxB pyruv 99.5 4.7E-14 1E-18 160.1 12.8 116 102-238 407-534 (575)
111 PRK08617 acetolactate synthase 99.5 2.9E-14 6.3E-19 161.3 11.1 118 101-239 412-539 (552)
112 PRK08527 acetolactate synthase 99.5 5.4E-14 1.2E-18 159.4 13.1 117 102-239 413-541 (563)
113 PRK07710 acetolactate synthase 99.5 3.1E-14 6.6E-19 161.6 11.0 116 102-238 423-550 (571)
114 CHL00099 ilvB acetohydroxyacid 99.5 3.8E-14 8.2E-19 161.2 11.6 116 101-237 428-556 (585)
115 PRK08978 acetolactate synthase 99.5 4.5E-14 9.8E-19 159.6 12.2 117 102-239 400-528 (548)
116 PRK08199 thiamine pyrophosphat 99.5 3.6E-14 7.7E-19 160.7 11.3 117 101-238 413-540 (557)
117 PRK08322 acetolactate synthase 99.5 6.2E-14 1.3E-18 158.6 13.1 116 101-237 404-529 (547)
118 PRK08273 thiamine pyrophosphat 99.5 3.7E-14 8E-19 161.6 11.1 116 102-238 414-548 (597)
119 TIGR03457 sulphoacet_xsc sulfo 99.5 3.3E-14 7.2E-19 161.6 10.6 118 102-239 429-560 (579)
120 PRK08155 acetolactate synthase 99.5 6.8E-14 1.5E-18 158.6 11.9 116 102-238 418-545 (564)
121 PRK09628 oorB 2-oxoglutarate-a 99.5 1.7E-13 3.8E-18 139.6 13.6 116 103-238 68-203 (277)
122 PRK07789 acetolactate synthase 99.5 6.8E-14 1.5E-18 159.9 10.2 117 102-238 446-578 (612)
123 PRK07282 acetolactate synthase 99.5 6.1E-14 1.3E-18 158.9 9.6 115 102-238 417-543 (566)
124 PRK06882 acetolactate synthase 99.5 1E-13 2.2E-18 157.7 11.2 118 101-238 419-548 (574)
125 PRK06276 acetolactate synthase 99.5 1.3E-13 2.9E-18 156.9 12.1 115 102-237 418-544 (586)
126 PRK05778 2-oxoglutarate ferred 99.5 4.3E-13 9.3E-18 138.2 14.0 115 103-237 70-204 (301)
127 TIGR00118 acolac_lg acetolacta 99.5 1.5E-13 3.3E-18 155.6 11.7 116 102-238 411-538 (558)
128 TIGR03394 indol_phenyl_DC indo 99.5 1.7E-13 3.7E-18 154.0 12.0 115 102-237 402-522 (535)
129 cd02018 TPP_PFOR Thiamine pyro 99.5 2.5E-13 5.5E-18 136.3 11.0 121 102-236 63-203 (237)
130 PRK07525 sulfoacetaldehyde ace 99.5 1.7E-13 3.7E-18 156.0 11.0 118 101-238 433-564 (588)
131 TIGR03254 oxalate_oxc oxalyl-C 99.5 3.3E-13 7.3E-18 152.7 12.8 115 102-238 416-540 (554)
132 PRK09259 putative oxalyl-CoA d 99.4 3.8E-13 8.3E-18 152.6 12.5 115 102-238 423-548 (569)
133 PRK08327 acetolactate synthase 99.4 3.6E-13 7.7E-18 152.7 11.8 116 102-235 429-566 (569)
134 PRK11866 2-oxoacid ferredoxin 99.4 8.3E-13 1.8E-17 134.5 12.3 118 102-237 58-193 (279)
135 PRK11869 2-oxoacid ferredoxin 99.4 6.2E-13 1.3E-17 135.4 11.2 117 103-237 60-194 (280)
136 PRK07449 2-succinyl-5-enolpyru 99.4 4.6E-13 1E-17 152.1 10.0 113 102-236 424-549 (568)
137 PRK07119 2-ketoisovalerate fer 99.4 1.3E-11 2.9E-16 130.9 19.7 204 365-580 49-308 (352)
138 PRK11867 2-oxoglutarate ferred 99.4 1.7E-12 3.6E-17 133.3 12.0 117 103-237 69-203 (286)
139 TIGR03336 IOR_alpha indolepyru 99.4 1.1E-11 2.3E-16 141.0 19.4 231 371-627 52-335 (595)
140 TIGR02177 PorB_KorB 2-oxoacid: 99.4 2E-12 4.3E-17 132.1 10.6 115 103-236 53-186 (287)
141 COG3961 Pyruvate decarboxylase 99.4 2.5E-12 5.4E-17 136.4 10.3 119 99-237 407-536 (557)
142 TIGR03336 IOR_alpha indolepyru 99.3 4.7E-12 1E-16 143.9 11.9 116 102-235 402-529 (595)
143 cd06586 TPP_enzyme_PYR Pyrimid 99.2 7.2E-11 1.6E-15 110.6 12.0 119 362-484 32-154 (154)
144 PRK08659 2-oxoglutarate ferred 99.2 5.3E-10 1.2E-14 119.6 19.9 203 365-579 49-334 (376)
145 PLN02980 2-oxoglutarate decarb 99.2 5.2E-11 1.1E-15 148.9 10.9 116 101-238 757-891 (1655)
146 COG3962 Acetolactate synthase 99.2 8.9E-11 1.9E-15 122.3 9.4 122 96-238 437-577 (617)
147 KOG0451 Predicted 2-oxoglutara 99.1 2.2E-08 4.9E-13 106.1 25.9 537 22-584 191-866 (913)
148 KOG1185 Thiamine pyrophosphate 99.1 3.9E-10 8.5E-15 118.4 12.1 119 99-237 426-561 (571)
149 PRK11864 2-ketoisovalerate fer 99.1 9.7E-10 2.1E-14 112.7 14.3 130 97-239 63-210 (300)
150 KOG1184 Thiamine pyrophosphate 99.1 4E-10 8.7E-15 119.4 10.1 119 97-235 409-538 (561)
151 PF03894 XFP: D-xylulose 5-pho 99.1 1.6E-09 3.4E-14 100.5 12.6 152 320-473 2-179 (179)
152 KOG4166 Thiamine pyrophosphate 99.1 1.2E-10 2.6E-15 119.8 5.6 117 102-239 523-650 (675)
153 PRK09622 porA pyruvate flavodo 99.1 5.3E-09 1.1E-13 113.2 18.4 201 373-584 64-333 (407)
154 PRK09627 oorA 2-oxoglutarate-a 99.0 3.1E-08 6.7E-13 105.8 18.5 197 373-580 55-336 (375)
155 PRK08366 vorA 2-ketoisovalerat 98.8 1.8E-07 4E-12 100.3 19.8 202 372-583 56-324 (390)
156 PRK08367 porA pyruvate ferredo 98.8 5.2E-07 1.1E-11 97.1 22.7 203 372-584 57-327 (394)
157 TIGR03710 OAFO_sf 2-oxoacid:ac 98.8 1.9E-07 4.2E-12 105.3 18.7 205 367-581 239-526 (562)
158 PRK11865 pyruvate ferredoxin o 98.8 1E-07 2.2E-12 98.0 14.3 129 97-238 63-213 (299)
159 COG3960 Glyoxylate carboligase 98.6 3.4E-08 7.4E-13 99.3 4.1 119 101-239 417-559 (592)
160 KOG0450 2-oxoglutarate dehydro 98.5 4.7E-05 1E-09 83.5 26.5 461 103-584 374-961 (1017)
161 COG0567 SucA 2-oxoglutarate de 98.4 3.2E-05 7E-10 88.4 22.7 459 103-583 298-854 (906)
162 TIGR02176 pyruv_ox_red pyruvat 98.3 3.3E-05 7.2E-10 93.8 20.2 202 372-583 58-330 (1165)
163 COG1013 PorB Pyruvate:ferredox 97.9 0.00011 2.5E-09 75.8 12.5 117 103-238 70-206 (294)
164 COG4231 Indolepyruvate ferredo 97.9 4.3E-05 9.2E-10 84.2 8.6 116 101-234 426-552 (640)
165 COG4231 Indolepyruvate ferredo 97.9 0.00029 6.2E-09 77.8 15.0 243 365-629 58-354 (640)
166 COG1165 MenD 2-succinyl-6-hydr 97.8 0.00011 2.4E-09 79.9 10.6 110 108-239 427-549 (566)
167 COG0674 PorA Pyruvate:ferredox 97.6 0.0053 1.1E-07 65.7 19.2 182 372-560 54-303 (365)
168 TIGR03297 Ppyr-DeCO2ase phosph 97.1 0.27 5.8E-06 52.7 25.9 284 105-482 35-333 (361)
169 PF01855 POR_N: Pyruvate flavo 97.1 0.0014 3E-08 65.6 7.1 109 371-483 42-153 (230)
170 cd07035 TPP_PYR_POX_like Pyrim 96.9 0.01 2.2E-07 55.4 10.8 116 365-484 35-155 (155)
171 PRK09193 indolepyruvate ferred 96.8 0.0041 8.9E-08 74.8 9.5 117 101-234 479-615 (1165)
172 PRK13030 2-oxoacid ferredoxin 96.7 0.0049 1.1E-07 74.4 9.2 114 103-234 468-601 (1159)
173 cd07034 TPP_PYR_PFOR_IOR-alpha 96.7 0.018 4E-07 54.0 11.0 114 364-483 41-159 (160)
174 cd03377 TPP_PFOR_PNO Thiamine 96.6 0.02 4.3E-07 60.5 11.3 104 135-242 151-273 (365)
175 PF02776 TPP_enzyme_N: Thiamin 96.4 0.027 5.8E-07 53.7 10.6 118 365-486 40-163 (172)
176 PRK13029 2-oxoacid ferredoxin 96.3 0.014 3E-07 70.3 9.7 115 103-234 495-629 (1186)
177 PRK13030 2-oxoacid ferredoxin 95.9 0.15 3.1E-06 62.1 15.4 201 366-581 75-342 (1159)
178 TIGR03845 sulfopyru_alph sulfo 95.6 0.063 1.4E-06 50.4 8.8 109 371-485 40-155 (157)
179 PRK09193 indolepyruvate ferred 95.4 0.27 5.9E-06 59.6 15.3 197 366-581 83-350 (1165)
180 cd07037 TPP_PYR_MenD Pyrimidin 95.3 0.11 2.4E-06 49.1 9.2 114 366-483 37-161 (162)
181 cd07033 TPP_PYR_DXS_TK_like Py 94.6 0.36 7.7E-06 45.3 10.6 87 137-233 64-154 (156)
182 cd07039 TPP_PYR_POX Pyrimidine 94.4 0.43 9.3E-06 45.1 10.9 114 366-485 40-159 (164)
183 cd03376 TPP_PFOR_porB_like Thi 94.2 1.8 3.8E-05 43.6 15.3 92 391-484 80-199 (235)
184 PRK13029 2-oxoacid ferredoxin 93.6 0.88 1.9E-05 55.3 13.7 198 366-581 86-353 (1186)
185 TIGR02176 pyruv_ox_red pyruvat 93.6 0.34 7.3E-06 59.7 10.4 103 136-242 952-1073(1165)
186 PRK11866 2-oxoacid ferredoxin 93.5 1.4 3E-05 45.5 13.3 150 320-485 20-192 (279)
187 cd02018 TPP_PFOR Thiamine pyro 93.3 3.8 8.3E-05 41.2 15.9 118 363-483 51-201 (237)
188 cd06586 TPP_enzyme_PYR Pyrimid 93.3 0.77 1.7E-05 42.4 10.2 105 107-233 46-152 (154)
189 TIGR03845 sulfopyru_alph sulfo 93.1 1.5 3.3E-05 41.1 11.8 108 106-234 44-153 (157)
190 cd01460 vWA_midasin VWA_Midasi 93.1 0.78 1.7E-05 46.9 10.5 82 137-221 166-255 (266)
191 TIGR02177 PorB_KorB 2-oxoacid: 93.0 1.6 3.4E-05 45.2 12.8 147 320-485 14-186 (287)
192 cd02014 TPP_POX Thiamine pyrop 92.5 4.7 0.0001 38.5 14.7 117 362-483 39-171 (178)
193 cd07036 TPP_PYR_E1-PDHc-beta_l 92.4 1.8 3.9E-05 41.1 11.5 100 107-232 55-164 (167)
194 TIGR02418 acolac_catab acetola 92.1 0.78 1.7E-05 52.1 10.2 115 366-485 38-158 (539)
195 cd02010 TPP_ALS Thiamine pyrop 92.0 3.4 7.4E-05 39.5 13.0 118 362-483 36-168 (177)
196 PRK07092 benzoylformate decarb 91.9 0.92 2E-05 51.4 10.5 117 365-485 49-171 (530)
197 PRK07064 hypothetical protein; 91.8 1.2 2.7E-05 50.5 11.3 117 366-485 43-166 (544)
198 cd02004 TPP_BZL_OCoD_HPCL Thia 91.7 2.1 4.5E-05 40.6 11.2 117 362-482 36-169 (172)
199 PF02775 TPP_enzyme_C: Thiamin 91.4 2.5 5.3E-05 39.2 11.1 116 362-481 16-152 (153)
200 PRK07979 acetolactate synthase 91.4 1.3 2.8E-05 50.8 10.9 116 366-486 44-165 (574)
201 PRK05858 hypothetical protein; 91.4 1.3 2.8E-05 50.4 10.9 116 365-485 43-164 (542)
202 PRK11865 pyruvate ferredoxin o 91.3 2.3 5E-05 44.2 11.6 108 375-485 72-211 (299)
203 PRK06112 acetolactate synthase 91.2 0.8 1.7E-05 52.5 9.1 116 365-485 50-171 (578)
204 PRK07524 hypothetical protein; 91.2 1.4 3.1E-05 49.9 11.0 117 366-485 41-164 (535)
205 PRK11864 2-ketoisovalerate fer 91.2 5.4 0.00012 41.5 14.2 111 375-486 72-208 (300)
206 TIGR00118 acolac_lg acetolacta 91.0 1.4 3E-05 50.3 10.8 116 366-485 41-161 (558)
207 PRK06466 acetolactate synthase 91.0 1.3 2.7E-05 50.8 10.5 116 365-485 43-164 (574)
208 PRK08199 thiamine pyrophosphat 90.9 1.4 3E-05 50.3 10.6 116 365-485 47-168 (557)
209 cd02008 TPP_IOR_alpha Thiamine 90.8 7.9 0.00017 36.9 14.3 101 379-483 58-175 (178)
210 PRK06456 acetolactate synthase 90.7 1.5 3.3E-05 50.2 10.7 115 366-485 45-165 (572)
211 PRK11867 2-oxoglutarate ferred 90.7 5.1 0.00011 41.5 13.5 110 375-486 72-203 (286)
212 PRK07710 acetolactate synthase 90.4 1.4 3E-05 50.5 10.0 117 364-485 53-175 (571)
213 PRK08155 acetolactate synthase 90.3 1.4 3.1E-05 50.2 10.1 115 365-485 52-173 (564)
214 cd02009 TPP_SHCHC_synthase Thi 90.2 4.6 0.0001 38.4 12.0 116 362-482 39-172 (175)
215 cd07038 TPP_PYR_PDC_IPDC_like 90.1 3 6.4E-05 39.3 10.4 115 366-484 37-162 (162)
216 cd03375 TPP_OGFOR Thiamine pyr 90.1 3.7 7.9E-05 39.9 11.3 105 377-484 56-183 (193)
217 PRK06457 pyruvate dehydrogenas 90.1 1.6 3.4E-05 49.7 10.1 116 365-485 40-160 (549)
218 PRK08978 acetolactate synthase 90.0 1.5 3.4E-05 49.8 10.0 115 366-485 40-160 (548)
219 PRK08322 acetolactate synthase 89.9 1.8 3.9E-05 49.2 10.4 115 366-485 40-160 (547)
220 PRK06965 acetolactate synthase 89.7 1.4 3.1E-05 50.6 9.4 116 365-485 60-181 (587)
221 PF02779 Transket_pyr: Transke 89.7 4.5 9.8E-05 38.6 11.5 105 108-234 60-171 (178)
222 PF02776 TPP_enzyme_N: Thiamin 89.6 5.5 0.00012 37.7 12.0 108 107-234 50-160 (172)
223 PRK07525 sulfoacetaldehyde ace 89.5 2.3 5.1E-05 48.8 11.0 116 365-486 44-165 (588)
224 PRK08266 hypothetical protein; 89.4 1.4 3.1E-05 49.9 9.1 118 365-485 44-168 (542)
225 PRK11269 glyoxylate carboligas 89.3 2.6 5.6E-05 48.5 11.1 115 365-485 43-165 (591)
226 TIGR01504 glyox_carbo_lig glyo 89.1 3.1 6.7E-05 47.8 11.6 117 366-486 43-165 (588)
227 cd02003 TPP_IolD Thiamine pyro 88.8 13 0.00027 36.5 14.2 115 362-482 36-181 (205)
228 PF09363 XFP_C: XFP C-terminal 88.8 5.7 0.00012 38.6 11.2 129 498-627 16-161 (203)
229 cd07035 TPP_PYR_POX_like Pyrim 88.8 6.5 0.00014 36.3 11.7 104 107-233 45-153 (155)
230 PRK07586 hypothetical protein; 88.8 3.1 6.7E-05 46.9 11.2 117 366-486 41-162 (514)
231 PRK07789 acetolactate synthase 88.5 3.1 6.8E-05 48.0 11.2 116 365-485 70-191 (612)
232 PRK09107 acetolactate synthase 88.4 2.9 6.4E-05 48.1 10.8 117 365-486 50-172 (595)
233 PRK09124 pyruvate dehydrogenas 88.4 3 6.4E-05 47.8 10.8 113 366-485 43-162 (574)
234 PRK08617 acetolactate synthase 88.4 2.5 5.5E-05 48.1 10.2 116 365-485 43-164 (552)
235 TIGR03457 sulphoacet_xsc sulfo 88.3 3.7 8E-05 47.1 11.5 115 366-486 41-161 (579)
236 PRK08527 acetolactate synthase 88.1 3.7 8E-05 46.9 11.3 115 366-485 43-163 (563)
237 PRK07282 acetolactate synthase 87.9 3.3 7.2E-05 47.3 10.8 116 365-485 49-170 (566)
238 PRK08611 pyruvate oxidase; Pro 87.9 3.5 7.6E-05 47.2 11.0 115 366-486 45-165 (576)
239 PRK09259 putative oxalyl-CoA d 87.9 2.9 6.2E-05 47.8 10.3 118 365-485 48-171 (569)
240 PRK06882 acetolactate synthase 87.8 3.3 7.1E-05 47.4 10.7 116 366-485 44-164 (574)
241 cd00568 TPP_enzymes Thiamine p 87.8 2.9 6.2E-05 39.1 8.7 101 378-482 52-166 (168)
242 PRK06276 acetolactate synthase 87.6 3.3 7.1E-05 47.6 10.6 116 366-485 40-160 (586)
243 TIGR02720 pyruv_oxi_spxB pyruv 87.6 2.3 5E-05 48.7 9.3 117 365-486 39-160 (575)
244 PRK07449 2-succinyl-5-enolpyru 87.5 1.5 3.3E-05 50.1 7.7 116 366-485 49-174 (568)
245 TIGR03254 oxalate_oxc oxalyl-C 87.5 3.4 7.4E-05 47.1 10.5 117 366-485 42-164 (554)
246 PLN02470 acetolactate synthase 87.4 3.8 8.2E-05 47.1 10.9 116 365-485 52-173 (585)
247 cd02001 TPP_ComE_PpyrDC Thiami 87.0 7.8 0.00017 36.2 10.9 112 362-483 33-153 (157)
248 PRK08979 acetolactate synthase 87.0 3.9 8.4E-05 46.8 10.6 116 365-485 43-164 (572)
249 cd02015 TPP_AHAS Thiamine pyro 86.8 11 0.00024 36.2 12.2 118 362-483 38-172 (186)
250 PLN02683 pyruvate dehydrogenas 86.8 6.8 0.00015 42.0 11.6 100 107-233 85-195 (356)
251 TIGR00173 menD 2-succinyl-5-en 86.8 2.3 5.1E-05 46.8 8.4 117 366-486 40-167 (432)
252 PRK06725 acetolactate synthase 86.7 4.6 0.0001 46.2 11.1 117 365-486 53-175 (570)
253 cd02012 TPP_TK Thiamine pyroph 86.7 6 0.00013 40.2 10.8 104 377-483 110-225 (255)
254 cd02007 TPP_DXS Thiamine pyrop 86.6 7 0.00015 38.1 10.7 100 376-482 79-187 (195)
255 PRK07418 acetolactate synthase 86.6 4.9 0.00011 46.5 11.3 116 365-485 61-182 (616)
256 PRK06048 acetolactate synthase 86.6 3.9 8.5E-05 46.7 10.4 116 365-485 46-167 (561)
257 PRK05778 2-oxoglutarate ferred 86.5 4.1 8.9E-05 42.5 9.5 104 377-483 75-201 (301)
258 smart00861 Transket_pyr Transk 85.8 9.6 0.00021 35.8 11.1 88 136-233 74-164 (168)
259 PRK11869 2-oxoacid ferredoxin 85.7 3.8 8.2E-05 42.3 8.7 106 377-484 65-192 (280)
260 PRK09212 pyruvate dehydrogenas 85.5 6.9 0.00015 41.4 10.9 62 163-233 110-172 (327)
261 TIGR00204 dxs 1-deoxy-D-xylulo 85.3 9.2 0.0002 44.2 12.5 89 137-234 377-468 (617)
262 cd02013 TPP_Xsc_like Thiamine 85.3 4.7 0.0001 39.2 8.8 118 362-483 41-177 (196)
263 PRK11892 pyruvate dehydrogenas 85.1 7.2 0.00016 43.3 11.1 100 107-233 200-310 (464)
264 PRK12571 1-deoxy-D-xylulose-5- 85.1 9.5 0.00021 44.3 12.5 102 108-234 373-477 (641)
265 PRK08659 2-oxoglutarate ferred 84.9 7 0.00015 42.2 10.7 107 107-236 59-172 (376)
266 PLN02573 pyruvate decarboxylas 84.5 3.1 6.8E-05 47.7 8.3 116 366-486 56-183 (578)
267 PRK08327 acetolactate synthase 84.5 5 0.00011 45.9 9.9 117 366-485 52-181 (569)
268 cd07039 TPP_PYR_POX Pyrimidine 84.1 14 0.00031 34.7 11.3 92 137-234 66-157 (164)
269 PRK06546 pyruvate dehydrogenas 83.9 6.2 0.00013 45.2 10.4 115 366-485 43-162 (578)
270 cd03371 TPP_PpyrDC Thiamine py 83.7 21 0.00044 34.5 12.5 114 363-482 40-160 (188)
271 TIGR03181 PDH_E1_alph_x pyruva 83.7 5.3 0.00011 42.5 9.0 86 391-482 144-243 (341)
272 TIGR00232 tktlase_bact transke 83.5 9.9 0.00021 44.2 11.9 83 144-234 428-513 (653)
273 PRK05444 1-deoxy-D-xylulose-5- 83.5 12 0.00026 43.0 12.4 88 137-233 346-436 (580)
274 cd07037 TPP_PYR_MenD Pyrimidin 83.2 12 0.00026 35.2 10.3 91 138-234 64-161 (162)
275 CHL00099 ilvB acetohydroxyacid 82.9 4.3 9.3E-05 46.6 8.6 115 366-485 53-173 (585)
276 PRK12474 hypothetical protein; 82.7 9.3 0.0002 43.2 11.1 116 366-486 45-166 (518)
277 PRK05899 transketolase; Review 82.5 13 0.00027 43.2 12.3 81 145-233 400-483 (624)
278 PRK08273 thiamine pyrophosphat 82.2 6.2 0.00014 45.4 9.6 117 365-486 43-165 (597)
279 PTZ00089 transketolase; Provis 82.1 11 0.00024 44.0 11.5 102 108-233 415-519 (661)
280 PRK12315 1-deoxy-D-xylulose-5- 82.0 9.8 0.00021 43.6 10.9 112 367-482 109-240 (581)
281 PLN02582 1-deoxy-D-xylulose-5- 82.0 17 0.00036 42.4 12.7 102 107-233 409-513 (677)
282 PLN02980 2-oxoglutarate decarb 81.5 4.5 9.7E-05 52.2 8.7 115 366-484 341-466 (1655)
283 cd02002 TPP_BFDC Thiamine pyro 81.2 45 0.00098 31.5 13.7 115 362-482 38-176 (178)
284 PRK06163 hypothetical protein; 81.0 22 0.00047 34.8 11.6 115 363-483 49-171 (202)
285 PLN02234 1-deoxy-D-xylulose-5- 79.7 17 0.00038 41.9 11.8 88 136-233 424-514 (641)
286 PLN02225 1-deoxy-D-xylulose-5- 79.5 14 0.00031 42.9 11.0 102 107-233 434-538 (701)
287 CHL00144 odpB pyruvate dehydro 79.2 16 0.00035 38.6 10.7 39 189-232 132-171 (327)
288 PTZ00182 3-methyl-2-oxobutanat 79.1 25 0.00055 37.6 12.2 61 163-232 141-202 (355)
289 cd02006 TPP_Gcl Thiamine pyrop 78.7 14 0.00031 36.0 9.5 119 362-483 45-192 (202)
290 cd07038 TPP_PYR_PDC_IPDC_like 77.7 20 0.00044 33.6 9.9 86 143-233 68-160 (162)
291 PF01855 POR_N: Pyruvate flavo 77.7 8.5 0.00019 38.5 7.7 107 107-238 47-157 (230)
292 COG4032 Predicted thiamine-pyr 77.2 4.9 0.00011 36.5 5.0 106 373-483 50-162 (172)
293 PRK07119 2-ketoisovalerate fer 76.7 15 0.00033 39.2 9.8 105 107-236 59-172 (352)
294 cd07034 TPP_PYR_PFOR_IOR-alpha 76.5 24 0.00052 32.7 10.0 87 137-233 67-158 (160)
295 PRK09628 oorB 2-oxoglutarate-a 75.8 19 0.00041 37.1 9.8 107 376-485 72-201 (277)
296 TIGR03394 indol_phenyl_DC indo 75.2 15 0.00033 41.6 9.8 118 366-486 40-166 (535)
297 PRK12753 transketolase; Review 73.9 31 0.00066 40.3 11.9 81 145-233 435-518 (663)
298 PRK12754 transketolase; Review 73.4 30 0.00066 40.3 11.7 81 145-233 435-518 (663)
299 TIGR03710 OAFO_sf 2-oxoacid:ac 72.3 17 0.00036 41.6 9.2 110 107-239 248-364 (562)
300 PLN02790 transketolase 69.4 41 0.00089 39.2 11.7 76 151-233 431-509 (654)
301 COG1071 AcoA Pyruvate/2-oxoglu 68.1 26 0.00056 37.3 8.8 75 405-481 176-257 (358)
302 CHL00149 odpA pyruvate dehydro 68.1 23 0.00051 37.6 8.6 88 391-482 157-256 (341)
303 PRK06154 hypothetical protein; 65.5 43 0.00093 38.3 10.7 115 365-485 55-176 (565)
304 cd02005 TPP_PDC_IPDC Thiamine 65.5 73 0.0016 30.5 10.8 119 362-483 38-172 (183)
305 TIGR03846 sulfopy_beta sulfopy 64.9 57 0.0012 31.2 9.9 113 363-483 34-154 (181)
306 PRK09627 oorA 2-oxoglutarate-a 64.7 35 0.00077 36.8 9.3 106 107-236 58-171 (375)
307 TIGR03393 indolpyr_decarb indo 64.4 29 0.00062 39.4 9.0 115 366-486 41-167 (539)
308 COG0028 IlvB Thiamine pyrophos 64.2 45 0.00097 38.0 10.4 118 364-485 39-161 (550)
309 PF04273 DUF442: Putative phos 61.9 72 0.0015 28.0 9.1 79 151-235 15-95 (110)
310 PLN02269 Pyruvate dehydrogenas 60.7 37 0.0008 36.5 8.4 74 404-482 176-256 (362)
311 COG3958 Transketolase, C-termi 58.9 76 0.0016 32.8 9.7 112 101-239 53-169 (312)
312 PRK08366 vorA 2-ketoisovalerat 58.0 94 0.002 33.8 11.1 105 107-238 60-169 (390)
313 cd02000 TPP_E1_PDC_ADC_BCADC T 58.0 47 0.001 34.4 8.6 88 392-482 127-225 (293)
314 PF00676 E1_dh: Dehydrogenase 56.5 34 0.00075 35.7 7.3 102 378-482 107-222 (300)
315 cd00860 ThrRS_anticodon ThrRS 55.2 30 0.00064 28.3 5.4 59 515-579 2-61 (91)
316 cd03372 TPP_ComE Thiamine pyro 55.2 1.1E+02 0.0023 29.2 10.0 110 363-482 34-152 (179)
317 COG0021 TktA Transketolase [Ca 53.2 66 0.0014 36.8 9.0 76 152-234 441-519 (663)
318 PF13519 VWA_2: von Willebrand 50.2 68 0.0015 29.3 7.6 73 135-220 99-171 (172)
319 PRK08367 porA pyruvate ferredo 49.4 78 0.0017 34.5 8.8 105 107-237 61-171 (394)
320 PLN02374 pyruvate dehydrogenas 48.1 73 0.0016 35.1 8.3 89 392-482 224-322 (433)
321 TIGR03182 PDH_E1_alph_y pyruva 47.9 66 0.0014 33.8 7.8 88 392-482 133-231 (315)
322 PRK09622 porA pyruvate flavodo 47.9 1.3E+02 0.0027 33.0 10.2 105 107-237 67-177 (407)
323 PF00456 Transketolase_N: Tran 47.0 41 0.00089 35.7 6.0 77 404-483 159-241 (332)
324 cd01455 vWA_F11C1-5a_type Von 44.9 2.5E+02 0.0055 27.2 10.5 74 134-222 110-186 (191)
325 KOG1145 Mitochondrial translat 44.2 1.2E+02 0.0027 34.1 9.1 98 134-241 225-342 (683)
326 cd00858 GlyRS_anticodon GlyRS 43.9 51 0.0011 29.1 5.4 58 515-579 27-87 (121)
327 PRK10329 glutaredoxin-like pro 43.3 87 0.0019 25.6 6.3 34 516-550 2-35 (81)
328 COG1154 Dxs Deoxyxylulose-5-ph 41.8 2.2E+02 0.0048 32.5 10.8 94 135-239 382-477 (627)
329 PF07279 DUF1442: Protein of u 41.8 2.6E+02 0.0056 27.7 10.1 101 102-235 48-149 (218)
330 KOG1201 Hydroxysteroid 17-beta 41.0 2.9E+02 0.0062 28.8 10.7 84 134-234 36-120 (300)
331 COG0075 Serine-pyruvate aminot 40.8 99 0.0022 33.4 7.8 87 135-238 55-145 (383)
332 PF10740 DUF2529: Protein of u 39.4 1.4E+02 0.003 28.4 7.5 80 461-547 25-115 (172)
333 PF04430 DUF498: Protein of un 39.0 23 0.00051 30.9 2.3 35 515-549 54-89 (110)
334 KOG1185 Thiamine pyrophosphate 37.5 1.2E+02 0.0026 33.6 7.7 116 361-481 417-556 (571)
335 KOG0225 Pyruvate dehydrogenase 36.8 92 0.002 32.7 6.4 70 405-482 204-284 (394)
336 cd01453 vWA_transcription_fact 36.6 3.7E+02 0.0081 25.5 10.5 71 135-221 107-178 (183)
337 cd03028 GRX_PICOT_like Glutare 35.2 67 0.0015 26.7 4.5 36 515-550 8-47 (90)
338 PRK13685 hypothetical protein; 35.0 4.5E+02 0.0098 27.6 11.8 85 135-223 193-288 (326)
339 TIGR00365 monothiol glutaredox 33.8 71 0.0015 27.1 4.4 35 515-549 12-50 (97)
340 cd00248 Mth938-like Mth938-lik 33.8 33 0.00071 30.0 2.4 35 515-549 53-88 (109)
341 TIGR00173 menD 2-succinyl-5-en 33.6 2.2E+02 0.0048 31.2 9.5 92 137-234 66-164 (432)
342 cd05125 Mth938_2P1-like Mth938 33.0 36 0.00078 30.1 2.5 35 515-549 55-90 (114)
343 cd02017 TPP_E1_EcPDC_like Thia 32.6 4E+02 0.0087 28.9 10.7 83 372-457 118-218 (386)
344 COG0674 PorA Pyruvate:ferredox 30.8 4.1E+02 0.009 28.5 10.7 107 107-238 58-168 (365)
345 cd05560 Xcc1710_like Xcc1710_l 30.3 47 0.001 29.0 2.8 35 515-549 53-88 (109)
346 PF06707 DUF1194: Protein of u 29.2 4.3E+02 0.0094 25.9 9.4 95 107-220 95-196 (205)
347 COG4635 HemG Flavodoxin [Energ 28.8 80 0.0017 29.6 4.1 38 518-555 3-44 (175)
348 PF03129 HGTP_anticodon: Antic 28.7 94 0.002 25.7 4.3 57 516-578 1-61 (94)
349 PF01565 FAD_binding_4: FAD bi 28.5 79 0.0017 28.3 4.1 74 453-532 3-80 (139)
350 cd00859 HisRS_anticodon HisRS 27.6 1.1E+02 0.0024 24.5 4.5 33 515-547 2-35 (91)
351 PF03853 YjeF_N: YjeF-related 26.4 1E+02 0.0023 29.0 4.7 44 515-558 27-70 (169)
352 PRK13406 bchD magnesium chelat 25.4 4.9E+02 0.011 30.0 10.5 98 105-220 472-581 (584)
353 PF02861 Clp_N: Clp amino term 25.2 66 0.0014 23.4 2.5 26 604-629 28-53 (53)
354 COG2515 Acd 1-aminocyclopropan 25.2 4.1E+02 0.0088 27.8 8.7 84 141-233 67-153 (323)
355 PRK08105 flavodoxin; Provision 25.0 85 0.0018 29.0 3.7 35 519-553 5-43 (149)
356 cd01452 VWA_26S_proteasome_sub 24.5 2.5E+02 0.0055 27.1 6.9 30 136-165 108-138 (187)
357 PF00070 Pyr_redox: Pyridine n 24.0 1E+02 0.0022 24.7 3.6 31 517-550 2-32 (80)
358 COG1165 MenD 2-succinyl-6-hydr 24.0 3.8E+02 0.0082 30.4 8.8 149 323-483 12-173 (566)
359 cd00861 ProRS_anticodon_short 24.0 1.2E+02 0.0027 24.8 4.2 58 515-578 2-63 (94)
360 COG1519 KdtA 3-deoxy-D-manno-o 22.7 5.9E+02 0.013 27.9 9.8 51 435-487 238-295 (419)
361 PF12500 TRSP: TRSP domain C t 22.4 1.3E+02 0.0029 28.1 4.3 32 513-545 57-88 (155)
362 cd00738 HGTP_anticodon HGTP an 21.8 1.4E+02 0.0031 24.3 4.2 59 515-579 2-64 (94)
363 TIGR02194 GlrX_NrdH Glutaredox 20.7 3.4E+02 0.0074 21.1 6.0 26 525-550 8-33 (72)
364 COG1240 ChlD Mg-chelatase subu 20.4 8.7E+02 0.019 24.8 9.9 76 135-219 177-257 (261)
No 1
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-133 Score=1071.26 Aligned_cols=621 Identities=51% Similarity=0.858 Sum_probs=585.3
Q ss_pred ChHHHHHhhcCCCCCCCcccHHHHHHHHHHHhhccCCCCCCCCCCCeEEecCcChhHHHHHHHHHcCCCCCCHHHHhhhh
Q 006816 1 MLIVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQYVCLHLAGFQSVQLEDLKRLC 80 (630)
Q Consensus 1 ~~~~~~~~~~~~GH~g~~ls~~~~~~~L~~~~~~~d~~~~~~~~~Dr~v~s~gH~~~~~y~~~~l~G~~~~~~~~l~~~r 80 (630)
+|++|+|++|+|||||.+||++||.++||.++|++||+||.|+||||||+|+||+|++||++++|+|++ ++.|+|++||
T Consensus 15 ~Ls~davqkAnSGHPG~pmG~A~ia~~L~~~~l~~nP~nP~W~nRDRFVLSaGHgSmllYsllhl~Gy~-ls~edLk~FR 93 (663)
T COG0021 15 FLSMDAVQKANSGHPGAPMGAADIAYVLWTRFLKHNPDNPKWINRDRFVLSAGHGSMLLYSLLHLTGYD-LSLEDLKNFR 93 (663)
T ss_pred HHHHHHHHhccCCCCCCCccHHHHHHHHHHHHhcCCCCCCCCCCCccEEecCCchhHHHHHHHHHccCC-CCHHHHHhhc
Confidence 489999999999999999999999999999999999999999999999999999999999999999998 9999999999
Q ss_pred hcCCCCCCCCCCCCcCcccccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhH
Q 006816 81 KMGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAA 160 (630)
Q Consensus 81 ~~~s~~~g~p~~~~~~~~~~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~ 160 (630)
|++|++||||++..++|++.+||+||||++.|||||||.|+++++||+||++..|+.+||++||||+|||+++||..+|+
T Consensus 94 Q~~SkTpGHPE~~~t~GVe~TTGPLGQGianAVGmAlAe~~La~~fn~~g~~ivdh~tYvl~GDGclmEGvs~EA~slAG 173 (663)
T COG0021 94 QLGSKTPGHPEYGHTPGVEATTGPLGQGLANAVGMALAEKHLAALFNRPGFDIVDHYTYVLVGDGCLMEGVSHEAASLAG 173 (663)
T ss_pred cCCCCCCCCCCcCCCCCeEeccCccchhHHHHHHHHHHHHHHHhhhCCCCCccccceEEEEecCchHhcccHHHHHHHHh
Confidence 99999999999989999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCcEEEEEECCCCcccccccccChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeeccccc
Q 006816 161 HWKLNKLTLIYDDNHNTIDGPTSLVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRERV 240 (630)
Q Consensus 161 ~~~L~~li~i~~~N~~~i~~~~~~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~~~ 240 (630)
+++|+|||+++|+|+++|++.+...+.+|+.++|+++||+++.++||| |+++|.+|+++|++..++|++|+|+|+-|+
T Consensus 174 ~l~L~kLIvlyD~N~IsiDG~~~~~f~ed~~~RfeAyGW~vi~~~DG~-D~e~I~~Ai~~Ak~~~dkPtlI~~kTiIG~- 251 (663)
T COG0021 174 HLKLGKLIVLYDSNDISIDGDTSLSFTEDVAKRFEAYGWNVIRVIDGH-DLEAIDKAIEEAKASTDKPTLIIVKTIIGK- 251 (663)
T ss_pred hcCCCcEEEEEeCCCceeccCcccccchhHHHHHHhcCCeEEEecCCC-CHHHHHHHHHHHHhcCCCCeEEEEEeeeec-
Confidence 999999999999999999999999999999999999999999777999 999999999999976779999999998876
Q ss_pred Cccc---------------------------CCCCCCChHHHHHHHHhhhhchhHHHHHHHHHHhhhhcCCchhHhHHHH
Q 006816 241 NWVD---------------------------RDQFHVIPMVYREMQIQTDHGERLEKEWCSKVYNYRSKYPHEGAELDLL 293 (630)
Q Consensus 241 g~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (630)
|... .++|++|+++++.|+...+++...+++|++.+.+|++.+|++.+++.+.
T Consensus 252 Gsp~kegt~~~HGapLg~~ev~~~k~~lgw~~~~F~vp~ev~~~~~~~~~~g~~~~~~W~~~~~~y~~~~Pe~~~~~~r~ 331 (663)
T COG0021 252 GSPNKEGTHKVHGAPLGEEEVAAAKKALGWEPEPFEVPEEVYAAFRAVEERGAKAEAAWNELFAAYKKKYPELAAEFERR 331 (663)
T ss_pred CCCCcCCCccccCCCCCHHHHHHHHHHhCCCCCceecCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence 5421 1237789999999996667888999999999999999999999999999
Q ss_pred hcCCCCCCccccCCCCCCCCCCchHHHHHHHHHHHHHHhCCCeEEEecCCCCCcccccccccCcCCCCCCCCCccccccc
Q 006816 294 LNGGLLPGWENALPKWSTSDPLDATRGYSEKCLNQLAKVLPGLIGGSADLASSNKAYLLGYHDFSQPDSPWGRNIRYGVR 373 (630)
Q Consensus 294 ~~~~~p~~~~~~~~~~~~~~~~~~~r~a~~~~L~~l~~~~~~iv~~~aD~~~s~~~~~~~~~~f~~~~~~p~R~~~~gIa 373 (630)
+++++|..|...+|.++...+..+||++++++|..+.+..|+++..|||++.|+++.+++...| ++++|++|+|.+||+
T Consensus 332 ~~~~~p~~~~~~~~~~~~~~~~~ATR~as~~~L~~l~~~~p~l~GGSADLa~Sn~T~~~~~~~~-~~~~~~gr~i~~GVR 410 (663)
T COG0021 332 LNGELPANWAAFLPKFEANGKSIATRKASGKALNALAKKLPELIGGSADLAPSNLTKISGSGDF-SPENYAGRYIHFGVR 410 (663)
T ss_pred hcccCchhHHHhhhhhcccccccchHHHHHHHHHHHHhhCccccccCcccccCccccccccCCC-CCCCCCCCeeEEeeH
Confidence 9999999997788888655456899999999999999999999999999999999988877778 667889999999999
Q ss_pred hHHHHHHHHHHHhcCCCCceEeeehHHHHHhhHHHHHHhcccCCCeEEEEecCCCCCCCCCCCCCChhhhHHhhcCCCcE
Q 006816 374 EHAMAGISNGVALHGGGLIPFAATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAVPRLL 453 (630)
Q Consensus 374 E~~~vg~a~GlA~~G~~~~pv~~~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~~g~~G~tHq~~~d~a~l~~iP~l~ 453 (630)
|++|.++++|||++| |++||..||..|++|++++||++|+|++|+++|.|||++++|+||||||++|+++.||+|||+.
T Consensus 411 Ef~M~AimNGialhG-g~~pyggTFlvFsdY~r~AiRlaALm~l~~~~V~THDSIgvGEDGPTHqPiEqLa~LRaiPN~~ 489 (663)
T COG0021 411 EFAMAAIMNGIALHG-GFIPYGGTFLVFSDYARPAVRLAALMGLPVIYVFTHDSIGVGEDGPTHQPVEQLASLRAIPNLS 489 (663)
T ss_pred HHHHHHHHHhHHHhc-CceeecceehhhHhhhhHHHHHHHhcCCCeEEEEecCceecCCCCCCCCcHHHHHHhhccCCce
Confidence 999999999999999 7999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCChHHHHHHHHHHHHcCCCcEEEEEcCCCcccccCCCcccccccccEEEecCCCCC-CCcEEEEEeCchHHHHHHH
Q 006816 454 AFRPADGNETAGSYRVAIANRDVPSVIALSRQKIAANLEGTSADEVERGGYIVSDNSSEN-KPEIILIGTGTELSLCEGT 532 (630)
Q Consensus 454 v~~P~d~~e~~~~l~~a~~~~~~P~~ir~~r~~~~~~~~~~~~~~~~~G~~~~~~~~~~G-~~dvtiva~G~~v~~a~~a 532 (630)
|++|||++|+..+|+.|+.+.++|++|+++||++ |.++.+..+.+..|.|++.+. .+ .+|++||++|++|.+|++|
T Consensus 490 V~RPaD~~Et~~aw~~Al~~~~gPt~LiltRQnl-p~l~~t~~~~~~kGaYvl~~~--~~~~pd~iliAtGSEV~lAv~A 566 (663)
T COG0021 490 VIRPADANETAAAWKYALERKDGPTALILTRQNL-PVLERTDLEGVAKGAYVLKDS--GGEDPDVILIATGSEVELAVEA 566 (663)
T ss_pred eEecCChHHHHHHHHHHHhcCCCCeEEEEecCCC-CccCCCccccccCccEEEeec--CCCCCCEEEEecccHHHHHHHH
Confidence 9999999999999999999779999999999999 988876677889999999983 22 2899999999999999999
Q ss_pred HHHHHhcCCceEEEEcccccccCcccHHHHhccCCCCCeeEEEEecCCcccccccccCcceEEEeccCCCCCCHHHHHHH
Q 006816 533 AKTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLPSRVVKRVSVEAGSSVGWREYVGVEGKVIGVEEFGASGAYLDTFKK 612 (630)
Q Consensus 533 a~~L~~~gi~~~Vi~~~~i~pld~~~~~~~~~v~~~~~~~~v~vEe~~~~g~~~~~~~~~~~~g~d~f~~~g~~~~l~~~ 612 (630)
++.|+++|+.++||+++|++.||+|...|+++|++.....+|.+|.+...||..|.+.....+|+++|+.||+.++|+++
T Consensus 567 a~~L~~~~~~vrVVS~P~~~~fe~Q~~~Y~~~vL~~~v~~rvaiEa~~~~~W~ky~g~~g~~ig~~~FG~Sap~~~l~~~ 646 (663)
T COG0021 567 AKELEAEGIKVRVVSMPSFELFEKQDEEYRESVLPGAVTARVAIEAGSALGWYKYVGLDGAVIGMDSFGASAPGDELFKE 646 (663)
T ss_pred HHHHHhcCCceEEEeccchHHHHcCCHHHHHhhccCCccceEEEEeccccchhhhcCCCCcEEeeccCcCCCCHHHHHHH
Confidence 99999888999999999999999999999999999775435999999999999888777788999999999999999999
Q ss_pred cCCChHHHHHHHHHhhh
Q 006816 613 YGFTIDNVTKVARSLLS 629 (630)
Q Consensus 613 ~gl~~~~I~~~i~~~l~ 629 (630)
||+|+|.|+++++++++
T Consensus 647 fGft~e~vv~~~~~~l~ 663 (663)
T COG0021 647 FGFTVENVVAKAKSLLN 663 (663)
T ss_pred hCCCHHHHHHHHHHhhC
Confidence 99999999999999874
No 2
>PRK12754 transketolase; Reviewed
Probab=100.00 E-value=3.2e-125 Score=1057.99 Aligned_cols=618 Identities=42% Similarity=0.742 Sum_probs=558.4
Q ss_pred ChHHHHHhhcCCCCCCCcccHHHHHHHHHHHhhccCCCCCCCCCCCeEEecCcChhHHHHHHHHHcCCCCCCHHHHhhhh
Q 006816 1 MLIVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQYVCLHLAGFQSVQLEDLKRLC 80 (630)
Q Consensus 1 ~~~~~~~~~~~~GH~g~~ls~~~~~~~L~~~~~~~d~~~~~~~~~Dr~v~s~gH~~~~~y~~~~l~G~~~~~~~~l~~~r 80 (630)
.++++|+.++++||+|++||++||+++||..+|++||+||+|++|||||+|+||+++++|++|++.|++ ++.++|++||
T Consensus 13 ~~~~~~~~~a~sGH~G~~ls~a~i~~~Ly~~~l~~~p~~p~w~~RDRfvlS~GH~~~~lYa~l~~~G~~-~~~e~L~~fr 91 (663)
T PRK12754 13 ALSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLNHNPQNPSWADRDRFVLSNGHGSMLIYSLLHLTGYD-LPMEELKNFR 91 (663)
T ss_pred HHHHHHHHhcCCCCcccchHHHHHHHHHHHHhcCCCccCCCCCCCCeEEEeCccHHHHHHHHHHHcCCC-CCHHHHHHhc
Confidence 378999999999999999999999999999999999999999999999999999999999999999986 9999999999
Q ss_pred hcCCCCCCCCCCCCcCcccccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhH
Q 006816 81 KMGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAA 160 (630)
Q Consensus 81 ~~~s~~~g~p~~~~~~~~~~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~ 160 (630)
|++|.++|||+...+||++++||+||+|++.|+|+|+|.|+++++||+++++..+++|||++|||+++||.+|||+++|+
T Consensus 92 ~~gs~~~gHpe~~~~pgve~stG~LGqGl~~AvG~AlA~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~ 171 (663)
T PRK12754 92 QLHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAG 171 (663)
T ss_pred cCCCCCCCCCCCCCCCCccccCCcccchHHHHHHHHHHHHHhhhccCcccccccCCEEEEEECcchhhchHHHHHHHHHH
Confidence 99999999999878999999999999999999999999999999999988777789999999999999999999999999
Q ss_pred HcCCCcEEEEEECCCCcccccccccChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeeccccc
Q 006816 161 HWKLNKLTLIYDDNHNTIDGPTSLVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRERV 240 (630)
Q Consensus 161 ~~~L~~li~i~~~N~~~i~~~~~~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~~~ 240 (630)
+++||||++|+|||+++|++++.....+++.++|++|||++++|+||| |+++|.+|+++|+...++|++|+++|+||+
T Consensus 172 ~~kL~nLi~ivD~N~~~idg~~~~~~~~~~~~r~~a~Gw~vi~vvDG~-D~~ai~~A~~~a~~~~~~Pt~I~~~T~~g~- 249 (663)
T PRK12754 172 TLKLGKLIAFYDDNGISIDGHVEGWFTDDTAMRFEAYGWHVIRGIDGH-DADSIKRAVEEARAVTDKPSLLMCKTIIGF- 249 (663)
T ss_pred HhCCCCEEEEEEcCCCccCcchhhccCccHHHHHHhcCCeEEeeECCC-CHHHHHHHHHHHHhcCCCCEEEEEEeeecc-
Confidence 999999999999999999999987778999999999999999933999 999999999998753589999999999998
Q ss_pred CcccC---------------------------CCCCCChHHHHHHHHhhhhchhHHHHHHHHHHhhhhcCCchhHhHHHH
Q 006816 241 NWVDR---------------------------DQFHVIPMVYREMQIQTDHGERLEKEWCSKVYNYRSKYPHEGAELDLL 293 (630)
Q Consensus 241 g~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (630)
|.+.- ++|++|+++++.|++ .+++....++|.+.++++...+|++.+++++.
T Consensus 250 G~~~~e~~~~~Hg~~l~~~~~~~~~~~l~~~~~~F~v~~~v~~~~~~-~~~~~~~~~~w~~~~~~~~~~~p~~~~~~~~~ 328 (663)
T PRK12754 250 GSPNKAGTHDSHGAPLGDAEIALTREQLGWKYAPFEIPSEIYAQWDA-KEAGQAKESAWNEKFAAYAKAYPQEAAEFTRR 328 (663)
T ss_pred CccccCCCccccCCCCCHHHHHHHHHhcCCCCCCCCCCHHHHHHHHH-hhhchHHHHHHHHHHHHHHHHCHHHHHHHHHH
Confidence 76411 114567777788866 46677888999999999999999998888888
Q ss_pred hcCCCCCCccccCCCCC----CCCCCchHHHHHHHHHHHHHHhCCCeEEEecCCCCCcccccccccCcCCCCCCCCCccc
Q 006816 294 LNGGLLPGWENALPKWS----TSDPLDATRGYSEKCLNQLAKVLPGLIGGSADLASSNKAYLLGYHDFSQPDSPWGRNIR 369 (630)
Q Consensus 294 ~~~~~p~~~~~~~~~~~----~~~~~~~~r~a~~~~L~~l~~~~~~iv~~~aD~~~s~~~~~~~~~~f~~~~~~p~R~~~ 369 (630)
+.+.+|..|...++.|. ...+..+||++++++|.++++.+|+++++++|+++|+++.++....| + +.||+|||+
T Consensus 329 ~~~~~p~~~~~~~~~~~~~~~~~~~~~atR~~~~~~L~~la~~~~~lv~~sADl~~s~~~~~~~~~~f-~-~~~p~r~i~ 406 (663)
T PRK12754 329 MKGEMPADFDAKAKEFIAKLQANPAKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAI-N-EDAAGNYIH 406 (663)
T ss_pred hcCCCchhHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHhhCCCEEEEeCCcccccCccccccccc-c-ccCCCCeEe
Confidence 88777877765555552 12346799999999999999999999999999999988766666788 4 689999999
Q ss_pred cccchHHHHHHHHHHHhcCCCCceEeeehHHHHHhhHHHHHHhcccCCCeEEEEecCCCCCCCCCCCCCChhhhHHhhcC
Q 006816 370 YGVREHAMAGISNGVALHGGGLIPFAATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAV 449 (630)
Q Consensus 370 ~gIaE~~~vg~a~GlA~~G~~~~pv~~~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~~g~~G~tHq~~~d~a~l~~i 449 (630)
+||+||+|+++|+|||++| |++||+++|++|++|+++|||++|+|++||++++||+|+++|+||+|||++||+++||+|
T Consensus 407 ~GIaE~~Mv~iaaGlA~~~-G~~Pf~~tf~~F~~r~~~qir~~a~~~l~V~~v~th~gi~~G~DG~THq~iEdla~lR~i 485 (663)
T PRK12754 407 YGVREFGMTAIANGIALHG-GFLPYTSTFLMFVEYARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVT 485 (663)
T ss_pred eccchhhHHHHHhhHHhcC-CCeEEEEeeHHHHHHHHHHHHHHHHcCCCeEEEEECCccccCCCCCCcccHHHHHHHhcC
Confidence 9999999999999999965 599999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEecCChHHHHHHHHHHHHcCCCcEEEEEcCCCcccccCCCc--ccccccccEEEecCCCCCCCcEEEEEeCchHH
Q 006816 450 PRLLAFRPADGNETAGSYRVAIANRDVPSVIALSRQKIAANLEGTS--ADEVERGGYIVSDNSSENKPEIILIGTGTELS 527 (630)
Q Consensus 450 P~l~v~~P~d~~e~~~~l~~a~~~~~~P~~ir~~r~~~~~~~~~~~--~~~~~~G~~~~~~~~~~G~~dvtiva~G~~v~ 527 (630)
|||+|++|+|+.|++.+++.++++.++|+|||++|+++ |.++... ...+..|+|++++ .++++|++||++|+||+
T Consensus 486 Pn~~V~~PaD~~E~~~~~~~a~~~~~gP~yirl~R~~~-p~~~~~~~~~~~~~~G~~vl~~--~~~~~dv~iiatGs~v~ 562 (663)
T PRK12754 486 PNMSTWRPCDQVESAVAWKYGVERQDGPTALILSRQNL-AQQERTEEQLANIARGGYVLKD--CAGQPELIFIATGSEVE 562 (663)
T ss_pred CCcEEecCCCHHHHHHHHHHHHhCCCCCEEEEeCCCCC-CCCCCccchhhhcccCcEEEEe--cCCCCCEEEEEECHHHH
Confidence 99999999999999999999998767999999999998 7665321 2457788888876 21224999999999999
Q ss_pred HHHHHHHHHHhcCCceEEEEcccccccCcccHHHHhccCCCCCeeEEEEecCCcccccccccCcceEEEeccCCCCCCHH
Q 006816 528 LCEGTAKTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLPSRVVKRVSVEAGSSVGWREYVGVEGKVIGVEEFGASGAYL 607 (630)
Q Consensus 528 ~a~~aa~~L~~~gi~~~Vi~~~~i~pld~~~~~~~~~v~~~~~~~~v~vEe~~~~g~~~~~~~~~~~~g~d~f~~~g~~~ 607 (630)
+|++|++.|+++||+++|||++|++|||+|..+|++++++......|++|++...||.+|++.....+|+++|+.||+.+
T Consensus 563 ~Al~Aa~~L~~~Gi~~~Vvs~~s~kp~d~q~~~y~~~il~~~~~~~v~iE~~~~~~w~~~~~~~~~~igi~~FG~Sg~~~ 642 (663)
T PRK12754 563 LAVAAYEKLTAEGVKARVVSMPSTDAFDKQDAAYRESVLPKAVSARVAVEAGIADYWYKYVGLNGAIVGMTTFGESAPAE 642 (663)
T ss_pred HHHHHHHHHHhhCCCcEEEEcCccCcCCCCCHHHHHhcCccccccceEeecccccchhhhccCCCCEEEeCCCCCCCCHH
Confidence 99999999999999999999999999999999999999987642249999999999988876555679999999999999
Q ss_pred HHHHHcCCChHHHHHHHHHhh
Q 006816 608 DTFKKYGFTIDNVTKVARSLL 628 (630)
Q Consensus 608 ~l~~~~gl~~~~I~~~i~~~l 628 (630)
+|+++||+|+++|+++++++|
T Consensus 643 ~l~~~~G~t~e~I~~~~~~~~ 663 (663)
T PRK12754 643 LLFEEFGFTVDNVVAKAKALL 663 (663)
T ss_pred HHHHHhCCCHHHHHHHHHHhC
Confidence 999999999999999999875
No 3
>PRK12753 transketolase; Reviewed
Probab=100.00 E-value=3.1e-123 Score=1049.63 Aligned_cols=615 Identities=45% Similarity=0.767 Sum_probs=552.8
Q ss_pred hHHHHHhhcCCCCCCCcccHHHHHHHHHHHhhccCCCCCCCCCCCeEEecCcChhHHHHHHHHHcCCCCCCHHHHhhhhh
Q 006816 2 LIVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQYVCLHLAGFQSVQLEDLKRLCK 81 (630)
Q Consensus 2 ~~~~~~~~~~~GH~g~~ls~~~~~~~L~~~~~~~d~~~~~~~~~Dr~v~s~gH~~~~~y~~~~l~G~~~~~~~~l~~~r~ 81 (630)
++++|+.++++||+|++||++||+++||..+|++||+||+|++|||||+|+||++|++|++|+++|+. ++.|+|++|||
T Consensus 14 ~~~~~~~~a~~GH~g~~ls~~~i~~~Ly~~~l~~~p~~p~~~~rDrfvls~GH~~~~lYa~l~~~G~~-~~~e~L~~fr~ 92 (663)
T PRK12753 14 LSMDAVQKANSGHPGAPMGMADIAEVLWRDFLKHNPTNPTWYDRDRFILSNGHASMLLYSLLHLTGYD-LPIEELKNFRQ 92 (663)
T ss_pred HHHHHHHhcCCCCchhhHHHHHHHHHHHHHHhCCCccCCCCCCCCcEEEecccHHHHHHHHHHHhCCC-CCHHHHHHhcc
Confidence 68999999999999999999999999999999999999999999999999999999999999999986 99999999999
Q ss_pred cCCCCCCCCCCCCcCcccccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHH
Q 006816 82 MGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAH 161 (630)
Q Consensus 82 ~~s~~~g~p~~~~~~~~~~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~ 161 (630)
.+|.++|||+...+|+++++||++|+|++.|+|+|+|.|+++++|++++++..+++|||++|||+++||++|||+++|++
T Consensus 93 ~~s~~~ghp~~~~~pgve~~tG~lG~gl~~AvG~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~ 172 (663)
T PRK12753 93 LHSKTPGHPEIGYTPGVETTTGPLGQGLANAVGLAIAERTLAAQFNRPGHEIVDHYTYVFMGDGCLMEGISHEVCSLAGT 172 (663)
T ss_pred CCCCCCCCCCCCCCCCcccCCCcccccHHHHHHHHHHHHHhhhhcCCccccccCCEEEEEECcCccccHHHHHHHHHHHH
Confidence 99999999998789999999999999999999999999999988888777667899999999999999999999999999
Q ss_pred cCCCcEEEEEECCCCcccccccccChhcHHHHHHhCCCeEEE-EeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeeccccc
Q 006816 162 WKLNKLTLIYDDNHNTIDGPTSLVLSEDISARFKSLGWNTIM-VENIHDNLSSFKEALMAAANETKKPTFIRVKKMRERV 240 (630)
Q Consensus 162 ~~L~~li~i~~~N~~~i~~~~~~~~~~~~~~~~~a~G~~~~~-v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~~~ 240 (630)
++|+||++|+|||+++|++++.....+++.++|++|||+++. | ||| |+++|.+|+++|++..++|++|+++|+||+
T Consensus 173 ~kL~nLi~ivd~N~~~i~~~~~~~~~~~~~~~f~a~Gw~~~~~v-DGh-D~~~i~~a~~~a~~~~~~P~~I~~~T~kG~- 249 (663)
T PRK12753 173 LGLGKLIGFYDHNGISIDGETEGWFTDDTAKRFEAYHWHVIHEI-DGH-DPQAIKEAILEAQSVKDKPSLIICRTIIGF- 249 (663)
T ss_pred HCCCCEEEEEECCCCcCCCChhhhcChhHHHHHHHcCCeEEcee-CCC-CHHHHHHHHHHHHHCCCCeEEEEEEEeecC-
Confidence 999999999999999999999887788999999999999996 6 999 999999999998863579999999999999
Q ss_pred CcccCC---------------------------CCCCChHHHHHHHHhhhhchhHHHHHHHHHHhhhhcCCchhHhHHHH
Q 006816 241 NWVDRD---------------------------QFHVIPMVYREMQIQTDHGERLEKEWCSKVYNYRSKYPHEGAELDLL 293 (630)
Q Consensus 241 g~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (630)
|+++.+ +|++|+++++.|+. .+++...+.+|.+.+.+|+...|+..+++.+.
T Consensus 250 G~~~~e~~~~~H~~~l~~~~~~~~~~~l~~~~~~F~v~~~v~~~~~~-~~~~~~~~~~w~~~~~~~~~~~p~~~~~~~~~ 328 (663)
T PRK12753 250 GSPNKAGKEESHGAPLGEEEVALTRQKLGWHHPPFEIPKEIYAAWDA-REKGEKAEQAWNEKFAAYKKAYPELAAEFTRR 328 (663)
T ss_pred CCCcccCCCCccCCCCCHHHHHHHHHHhCCCCCCCCCCHHHHHHHHh-hhhchHHHHHHHHHHHHHHHHCHHHHHHHHHH
Confidence 875321 14467777777764 45567778899999999999899988888887
Q ss_pred hcCCCCCCccccCCCCC----CCCCCchHHHHHHHHHHHHHHhCCCeEEEecCCCCCcccccccccCcCCCCCCCCCccc
Q 006816 294 LNGGLLPGWENALPKWS----TSDPLDATRGYSEKCLNQLAKVLPGLIGGSADLASSNKAYLLGYHDFSQPDSPWGRNIR 369 (630)
Q Consensus 294 ~~~~~p~~~~~~~~~~~----~~~~~~~~r~a~~~~L~~l~~~~~~iv~~~aD~~~s~~~~~~~~~~f~~~~~~p~R~~~ 369 (630)
+.+..|..|...++.|. ...++.+||++++++|.++++.+|+++++++|++.|+++.++....| + ++||+||||
T Consensus 329 ~~~~~p~~~~~~~~~~~~~~~~~~~~~a~r~~~g~~L~~l~~~~p~lv~~sADl~~S~~~~~~~~~~f-~-~~~p~r~i~ 406 (663)
T PRK12753 329 MSGGLPKDWEKKTQKYINELQANPAKIATRKASQNTLEAYGPLLPELLGGSADLAPSNLTIWSGSKSL-K-EDPAGNYIH 406 (663)
T ss_pred hcCCCChhHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhhCCCeEEEccccccccCcccccccch-h-hcCCCCEEE
Confidence 77776766665444442 12356899999999999999999999999999999988766666788 4 689999999
Q ss_pred cccchHHHHHHHHHHHhcCCCCceEeeehHHHHHhhHHHHHHhcccCCCeEEEEecCCCCCCCCCCCCCChhhhHHhhcC
Q 006816 370 YGVREHAMAGISNGVALHGGGLIPFAATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAV 449 (630)
Q Consensus 370 ~gIaE~~~vg~a~GlA~~G~~~~pv~~~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~~g~~G~tHq~~~d~a~l~~i 449 (630)
+|||||+|+++|+|||++| |++||+++|++|++|++||||++|+|++||++++||+|+++|+||+|||++||+++||.|
T Consensus 407 ~GIaEq~mv~~aaGlA~~~-G~~P~~~tf~~F~~r~~~qir~~a~~~l~V~~v~thdg~~~G~DG~THq~iedla~lR~i 485 (663)
T PRK12753 407 YGVREFGMTAIANGIAHHG-GFVPYTATFLMFVEYARNAARMAALMKARQIMVYTHDSIGLGEDGPTHQPVEQLASLRLT 485 (663)
T ss_pred eeecHHHHHHHHHHHHHhC-CCeEEEEehHHHHHHHHHHHHHHHhcCCCeEEEEeCCCcccCCCCcccccHHHHHHHhcC
Confidence 9999999999999999954 499999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEecCChHHHHHHHHHHHHcCCCcEEEEEcCCCcccccCCCc--ccccccccEEEecCCCCCCCcEEEEEeCchHH
Q 006816 450 PRLLAFRPADGNETAGSYRVAIANRDVPSVIALSRQKIAANLEGTS--ADEVERGGYIVSDNSSENKPEIILIGTGTELS 527 (630)
Q Consensus 450 P~l~v~~P~d~~e~~~~l~~a~~~~~~P~~ir~~r~~~~~~~~~~~--~~~~~~G~~~~~~~~~~G~~dvtiva~G~~v~ 527 (630)
|||+|++|+|++|++.+++.++++.++|+|||++|+++ +.++... ...+..|+|++++ .+|++|++||++|++|+
T Consensus 486 Pn~~v~~PaD~~E~~~~~~~al~~~~gP~~irl~R~~~-~~~~~~~~~~~~~~~G~~vl~~--~~~~~dv~iia~Gs~v~ 562 (663)
T PRK12753 486 PNFSTWRPCDQVEAAVAWKLAIERHNGPTALILSRQNL-AQQERTPEQVKNIARGGYILKD--SGGKPDLILIATGSEVE 562 (663)
T ss_pred CCCEEEccCCHHHHHHHHHHHHhcCCCCEEEEecCCCC-CCCCCcccchhhccCCcEEEec--cCCCCCEEEEEeCHHHH
Confidence 99999999999999999999998558999999999988 7665432 2347788888876 22225999999999999
Q ss_pred HHHHHHHHHHhcCCceEEEEcccccccCcccHHHHhccCCCCC-eeEEEEecCCcccccccccCcceEEEeccCCCCCCH
Q 006816 528 LCEGTAKTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLPSRV-VKRVSVEAGSSVGWREYVGVEGKVIGVEEFGASGAY 606 (630)
Q Consensus 528 ~a~~aa~~L~~~gi~~~Vi~~~~i~pld~~~~~~~~~v~~~~~-~~~v~vEe~~~~g~~~~~~~~~~~~g~d~f~~~g~~ 606 (630)
+|++|++.|+++||+++|||++|++|||+|.++|+.++++... +. |++|++...+|.++...+.+++|+|+|+.||+.
T Consensus 563 ~al~Aa~~L~~~gi~~~Vv~~~~~kp~d~~~~~y~~~vl~~~~~~~-vtvE~~~~~~~~~~~~~~~~~iGvd~Fg~sg~~ 641 (663)
T PRK12753 563 ITLQAAEKLTAEGRNVRVVSMPSTDIFDAQDEAYRESVLPSNVTAR-VAVEAGIADYWYKYVGLKGAIIGMTGFGESAPA 641 (663)
T ss_pred HHHHHHHHHHhcCCCcEEEECCcCCccchhHHHHHHhhcccccceE-EEEccChHHHHHHHcCCCCeEEEeCCCcCcCCH
Confidence 9999999999999999999999999999999988887776532 44 999999888887776667788999999999999
Q ss_pred HHHHHHcCCChHHHHHHHHHhh
Q 006816 607 LDTFKKYGFTIDNVTKVARSLL 628 (630)
Q Consensus 607 ~~l~~~~gl~~~~I~~~i~~~l 628 (630)
++|+++||||+++|+++|++++
T Consensus 642 ~~l~~~~Glt~~~Iv~~i~~~~ 663 (663)
T PRK12753 642 DKLFPFFGFTVENIVAKAKKLL 663 (663)
T ss_pred HHHHHHhCCCHHHHHHHHHHhC
Confidence 9999999999999999998864
No 4
>PLN02790 transketolase
Probab=100.00 E-value=8.7e-122 Score=1039.21 Aligned_cols=620 Identities=60% Similarity=1.027 Sum_probs=549.3
Q ss_pred hHHHHHhhcCCCCCCCcccHHHHHHHHHHHhhccCCCCCCCCCCCeEEecCcChhHHHHHHHHHcCCCCCCHHHHhhhhh
Q 006816 2 LIVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQYVCLHLAGFQSVQLEDLKRLCK 81 (630)
Q Consensus 2 ~~~~~~~~~~~GH~g~~ls~~~~~~~L~~~~~~~d~~~~~~~~~Dr~v~s~gH~~~~~y~~~~l~G~~~~~~~~l~~~r~ 81 (630)
++++|+.++++||+|++||++||+++||+.+|+|||+||.|++|||||||+||+++++|++|+++|+..++.++|++|||
T Consensus 4 ~~~~~~~~a~~GH~g~~ls~~ei~~~L~~~~~~~~~~~p~~~~rDrfvls~GH~~~~lYa~l~~~G~~~~~~~~l~~~r~ 83 (654)
T PLN02790 4 LAIDAVNKANSGHPGLPMGCAPMGHVLYDEVMKYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQMEDLKQFRQ 83 (654)
T ss_pred HHHHHHHhcCCCcCCchhhHHHHHHHHHHhhcccCCCCCCCCCCCEEEEeCcchHHHHHHHHHHcCCCCCCHHHHHHhcc
Confidence 68999999999999999999999999999999999999999999999999999999999999999984469999999999
Q ss_pred cCCCCCCCCCCCCcCcccccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHH
Q 006816 82 MGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAH 161 (630)
Q Consensus 82 ~~s~~~g~p~~~~~~~~~~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~ 161 (630)
.+|.++|||++.++||+++++|++|++++.|+|+|+|.|++++++++++++..+++|||++|||+++||++|||+++|++
T Consensus 84 ~~s~~~ghp~~~~~pgi~~~tG~lG~gl~~A~G~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~ 163 (654)
T PLN02790 84 WGSRTPGHPENFETPGIEVTTGPLGQGIANAVGLALAEKHLAARFNKPDHKIVDHYTYCILGDGCQMEGISNEAASLAGH 163 (654)
T ss_pred CCCCCCCCCCCCCCCCccccCCchhchHHHHHHHHHHHHHHHHHhCCCcccccCCEEEEEECcCcccchHHHHHHHHHHH
Confidence 99999999998889999999999999999999999999998887887665556899999999999999999999999999
Q ss_pred cCCCcEEEEEECCCCcccccccccChhcHHHHHHhCCCeEEEEeCC--CCCHHHHHHHHHHHHhcCCCcEEEEEeecccc
Q 006816 162 WKLNKLTLIYDDNHNTIDGPTSLVLSEDISARFKSLGWNTIMVENI--HDNLSSFKEALMAAANETKKPTFIRVKKMRER 239 (630)
Q Consensus 162 ~~L~~li~i~~~N~~~i~~~~~~~~~~~~~~~~~a~G~~~~~v~dG--~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~~ 239 (630)
++||||++|+|||+++|++++.....+++.++|++|||+++.| || | |++++.+|+++|++..++|++|+++|+||+
T Consensus 164 ~~L~nli~i~d~N~~~i~~~~~~~~~~~~~~~f~a~G~~~~~v-dgg~h-d~~~l~~a~~~a~~~~~~P~lI~~~T~kG~ 241 (654)
T PLN02790 164 WGLGKLIVLYDDNHISIDGDTEIAFTEDVDKRYEALGWHTIWV-KNGNT-DYDEIRAAIKEAKAVTDKPTLIKVTTTIGY 241 (654)
T ss_pred hCCCCEEEEEecCCccccCCcccccchhHHHHHHHcCCeEEEE-CCCCC-CHHHHHHHHHHHHhcCCCeEEEEEEEeecC
Confidence 9999999999999999999999877889999999999999999 77 9 999999999999853579999999999999
Q ss_pred cCcccCC---------------------------CCCCChHHHHHHHHhhhhchhHHHHHHHHHHhhhhcCCchhHhHHH
Q 006816 240 VNWVDRD---------------------------QFHVIPMVYREMQIQTDHGERLEKEWCSKVYNYRSKYPHEGAELDL 292 (630)
Q Consensus 240 ~g~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (630)
|+++.+ +|.+++++++.|.....++.....+|.+.+.++....|+..+++.+
T Consensus 242 -G~~~~e~~~~~H~~~~~~~~~~~~~~~l~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 320 (654)
T PLN02790 242 -GSPNKANSYSVHGAALGEKEVDATRKNLGWPYEPFHVPEDVKSHWSKHTKEGAALEAEWNAKFAEYKKKYPEEAAELKS 320 (654)
T ss_pred -CCccccCCCCcCCCCCCHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 886322 1223334444454322334455678988888777777888888888
Q ss_pred HhcCCCCCCccccCCCCCCCCCCchHHHHHHHHHHHHHHhCCCeEEEecCCCCCcccccccccCcCCCCC-CCCCccccc
Q 006816 293 LLNGGLLPGWENALPKWSTSDPLDATRGYSEKCLNQLAKVLPGLIGGSADLASSNKAYLLGYHDFSQPDS-PWGRNIRYG 371 (630)
Q Consensus 293 ~~~~~~p~~~~~~~~~~~~~~~~~~~r~a~~~~L~~l~~~~~~iv~~~aD~~~s~~~~~~~~~~f~~~~~-~p~R~~~~g 371 (630)
.+.+++|..|...++.|+..+++.+||++++++|.++++.+|+++++++|+..|+++.++++..| + ++ ||+||||+|
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~a~R~~~~~~l~~i~~~~p~iv~gsaDl~~s~~t~~~~~~~f-~-~~~~p~Rfi~~G 398 (654)
T PLN02790 321 LISGELPSGWEKALPTFTPEDPADATRNLSQKCLNALAKVLPGLIGGSADLASSNMTLLKDFGDF-Q-KDTPEERNVRFG 398 (654)
T ss_pred HhccCCchhhhhhhhhhcccCcchHHHHHHHHHHHHHHhhCCCeEEEECCCCcccccccccchhh-h-hcCCCCCeEEee
Confidence 88888887777777777544566899999999999999999999999999999887766667788 4 56 699999999
Q ss_pred cchHHHHHHHHHHHhcCCCCceEeeehHHHHHhhHHHHHHhcccCCCeEEEEecCCCCCCCCCCCCCChhhhHHhhcCCC
Q 006816 372 VREHAMAGISNGVALHGGGLIPFAATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAVPR 451 (630)
Q Consensus 372 IaE~~~vg~a~GlA~~G~~~~pv~~~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~~g~~G~tHq~~~d~a~l~~iP~ 451 (630)
||||+|+++|+|||++|.|++||++||+.|++|+++|||++|+|++||+|++||+|+++|+||+|||++||+++||+|||
T Consensus 399 IaEq~mv~~AaGlA~~G~G~~P~~~tf~~F~~~~~~~ir~~al~~lpV~~v~thdg~~~G~DG~THq~iedla~lR~iPn 478 (654)
T PLN02790 399 VREHGMGAICNGIALHSSGLIPYCATFFVFTDYMRAAMRLSALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLASLRAMPN 478 (654)
T ss_pred echHHHHHHHHHHHhcCCCcEEEEEecHHHHHHHHHHHHHHHhcCCCeEEEEECCceeecCCCCCcccHHHHHHhcCCCC
Confidence 99999999999999963239999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEecCChHHHHHHHHHHHHcCCCcEEEEEcCCCcccccCCCcccccccccEEEecCCCCC-CCcEEEEEeCchHHHHH
Q 006816 452 LLAFRPADGNETAGSYRVAIANRDVPSVIALSRQKIAANLEGTSADEVERGGYIVSDNSSEN-KPEIILIGTGTELSLCE 530 (630)
Q Consensus 452 l~v~~P~d~~e~~~~l~~a~~~~~~P~~ir~~r~~~~~~~~~~~~~~~~~G~~~~~~~~~~G-~~dvtiva~G~~v~~a~ 530 (630)
|+|++|+|++|++.||++++++.++|+|||++|+.+ +.++.+....+..|+|++++. ..| .+|++||++|+||++|+
T Consensus 479 l~V~~PaD~~E~~~~l~~al~~~~gP~~irl~R~~~-~~~~~~~~~~~~~G~~vl~~~-~~~~~~dv~iia~G~~v~~Al 556 (654)
T PLN02790 479 ILMLRPADGNETAGAYKVAVTNRKRPTVLALSRQKV-PNLPGTSIEGVEKGGYVISDN-SSGNKPDLILIGTGSELEIAA 556 (654)
T ss_pred cEEEeCCCHHHHHHHHHHHHHcCCCCEEEEecCCCC-CCCCCCcccccccCcEEEEeC-CCCCCCCEEEEEcCHHHHHHH
Confidence 999999999999999999998558999999999988 766543235578899888772 101 17999999999999999
Q ss_pred HHHHHHHhcCCceEEEEcccccccCcccHHHHhccCCCCCeeEEEEecCCcccccccccCcceEEEeccCCCCCCHHHHH
Q 006816 531 GTAKTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLPSRVVKRVSVEAGSSVGWREYVGVEGKVIGVEEFGASGAYLDTF 610 (630)
Q Consensus 531 ~aa~~L~~~gi~~~Vi~~~~i~pld~~~~~~~~~v~~~~~~~~v~vEe~~~~g~~~~~~~~~~~~g~d~f~~~g~~~~l~ 610 (630)
+|++.|+++||+++|||++|++|||.+.+.|++.++...++.+|++|+++..||++++..+.+++|+|+|+.+|+.++|+
T Consensus 557 ~Aa~~L~~~gi~~~VV~~~~ikpld~~~~~y~~~~~~~~~~~vvtiE~~~~~G~~~~~~~~~~~igvd~Fg~sg~~~~l~ 636 (654)
T PLN02790 557 KAAKELRKEGKKVRVVSMVCWELFEEQSDEYKESVLPSSVTARVSVEAGSTFGWEKYVGSKGKVIGVDRFGASAPAGILY 636 (654)
T ss_pred HHHHHHHhcCCceEEEecCccchhhhhHHHHHHhhhccccceEEEecCccchhHHHhcCCCceEEEeCCCcCcCCHHHHH
Confidence 99999999999999999999999999998888777743333459999999988887766666789999999999999999
Q ss_pred HHcCCChHHHHHHHHHhh
Q 006816 611 KKYGFTIDNVTKVARSLL 628 (630)
Q Consensus 611 ~~~gl~~~~I~~~i~~~l 628 (630)
+++|||+++|+++|++++
T Consensus 637 ~~~Glt~e~I~~~i~~~~ 654 (654)
T PLN02790 637 KEFGFTVENVVAAAKSLL 654 (654)
T ss_pred HHhCCCHHHHHHHHHHhC
Confidence 999999999999998864
No 5
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=100.00 E-value=3.1e-121 Score=1034.49 Aligned_cols=616 Identities=48% Similarity=0.822 Sum_probs=550.1
Q ss_pred hHHHHHhhcCCCCCCCcccHHHHHHHHHHHhhccCCCCCCCCCCCeEEecCcChhHHHHHHHHHcCCCCCCHHHHhhhhh
Q 006816 2 LIVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQYVCLHLAGFQSVQLEDLKRLCK 81 (630)
Q Consensus 2 ~~~~~~~~~~~GH~g~~ls~~~~~~~L~~~~~~~d~~~~~~~~~Dr~v~s~gH~~~~~y~~~~l~G~~~~~~~~l~~~r~ 81 (630)
++++|+.++++||+|++||++||+++||..+|++||+||+|++|||||+|+||++|++|+++++.|+. ++.|+|++||+
T Consensus 10 ~~~~~~~~a~~GH~g~~ls~a~i~~~Ly~~~l~~~p~~p~~~~rDrfvlS~GH~~~~lYa~l~~~G~~-~~~e~L~~fr~ 88 (653)
T TIGR00232 10 LAVDAIQKAKSGHPGAPLGAAPIAEVLWTKFLKFNPTNPKWINRDRFVLSNGHGSMLLYSLLHLTGYD-LSIEDLKQFRQ 88 (653)
T ss_pred HHHHHHHhcCCCCccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCeEEEECccHHHHHHHHHHHcCCC-CCHHHHHhccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999992 39999999999
Q ss_pred cCCCCCCCCCCCCcCcccccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHH
Q 006816 82 MGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAH 161 (630)
Q Consensus 82 ~~s~~~g~p~~~~~~~~~~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~ 161 (630)
.+|.++|||+...+|+++++||++|+|++.|+|+|+|.|+++++|++++++..+++|||++|||+++||.+|||+++|++
T Consensus 89 ~~s~~~ghp~~~~~~gi~~~tG~lG~gl~~AvG~Ala~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~EG~~~EA~~~A~~ 168 (653)
T TIGR00232 89 LHSKTPGHPEFGHTAGVEATTGPLGQGIANAVGMAIAQKTLAATFNKPGFEIVDHYTYVFVGDGCLQEGISYEVASLAGH 168 (653)
T ss_pred CCCCCCCCCCCCCCCCeeeCCcchhccHHHHHHHHHHHHHHhhhccCCccCCcCCEEEEEEccccccccHHHHHHHHHHH
Confidence 99999999998789999999999999999999999999999988988777778999999999999999999999999999
Q ss_pred cCCCcEEEEEECCCCcccccccccChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeecccccC
Q 006816 162 WKLNKLTLIYDDNHNTIDGPTSLVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRERVN 241 (630)
Q Consensus 162 ~~L~~li~i~~~N~~~i~~~~~~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~~~g 241 (630)
++||||++|+|||++++++++.....+++.++|++|||++++|.||| |++++.+|++++++..++|++|+++|+||+ |
T Consensus 169 ~~L~nLi~ivd~N~~~i~~~~~~~~~~~~~~~~~a~Gw~~~~v~DG~-D~~ai~~A~~~a~~~~~~P~~I~~~T~~g~-G 246 (653)
T TIGR00232 169 LKLGKLIVLYDSNRISIDGAVDGSFTEDVAKRFEAYGWEVLEVEDGH-DLAAIDAAIEEAKASKDKPTLIEVTTTIGF-G 246 (653)
T ss_pred hCCCcEEEEEeCCCeeeccccccccCccHHHHHHhcCCcEEEeCCCC-CHHHHHHHHHHHHhCCCCCEEEEEEeeecc-c
Confidence 99999999999999999999987777899999999999999977999 999999999999872248999999999998 8
Q ss_pred cccCC---------------------------CCCCChHHHHHHHHh-hhhchhHHHHHHHHHHhhhhcCCchhHhHHHH
Q 006816 242 WVDRD---------------------------QFHVIPMVYREMQIQ-TDHGERLEKEWCSKVYNYRSKYPHEGAELDLL 293 (630)
Q Consensus 242 ~~~~~---------------------------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (630)
++..+ +|.+|+++++.|+.. .+++....++|...+.++...+|+..+++++.
T Consensus 247 ~~~~e~~~~~H~~~~~~~~~~~~~~~l~~~~~~f~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~p~~~~~~~~~ 326 (653)
T TIGR00232 247 SPNKAGTHGVHGAPLGDEDVKLTKKNLGWNYNPFEVPQEVYDHFQKTVKERGAKAEQEWNELFAAYKKKYPELAAEFTRR 326 (653)
T ss_pred CcccCCCCcccCCCCCHHHHHHHHHHhCCCCCCccCCHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHCHHHHHHHHHH
Confidence 74221 244556666666553 45667778899999999998899888888887
Q ss_pred hcCCCCCCccccCCCCCCCCCCchHHHHHHHHHHHHHHhCCCeEEEecCCCCCcccccccccCcCCCCCCCCCccccccc
Q 006816 294 LNGGLLPGWENALPKWSTSDPLDATRGYSEKCLNQLAKVLPGLIGGSADLASSNKAYLLGYHDFSQPDSPWGRNIRYGVR 373 (630)
Q Consensus 294 ~~~~~p~~~~~~~~~~~~~~~~~~~r~a~~~~L~~l~~~~~~iv~~~aD~~~s~~~~~~~~~~f~~~~~~p~R~~~~gIa 373 (630)
+++++|..|...+|+|+...++.+||++++++|.++++.+|+++++++|++.|+++..+....| +++||+||||+|||
T Consensus 327 ~~~~~p~~~~~~~~~~~~~~~~~atR~~~g~~L~~la~~~p~iv~lsaDl~~s~~~~~~~~~~f--~~~~p~rfi~~GIa 404 (653)
T TIGR00232 327 LSGELPADWDKKLPEFKAKLQALATRKYSQNVLNAIANVLPELLGGSADLAPSNLTKWKGSGDL--HENPLGNYIHYGVR 404 (653)
T ss_pred HhccCchhhhhhhhhhhccCcchHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCcccccccch--hhcCCCCeEeeccc
Confidence 8777787777666666433466899999999999999999999999999998887654333447 36899999999999
Q ss_pred hHHHHHHHHHHHhcCCCCceEeeehHHHHHhhHHHHHHhcccCCCeEEEEecCCCCCCCCCCCCCChhhhHHhhcCCCcE
Q 006816 374 EHAMAGISNGVALHGGGLIPFAATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAVPRLL 453 (630)
Q Consensus 374 E~~~vg~a~GlA~~G~~~~pv~~~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~~g~~G~tHq~~~d~a~l~~iP~l~ 453 (630)
||+|+++|+|||++| |++||+++|++|++|+++|||+.|++++||++++||+|+++|+||+|||++||+++||+||||+
T Consensus 405 Eq~mv~~AaGlA~~g-G~~p~~~tf~~F~~r~~~~ir~~a~~~lpV~~v~th~g~~~G~dG~THq~iedia~lr~iPn~~ 483 (653)
T TIGR00232 405 EFAMGAIMNGIALHG-GFKPYGGTFLMFVDYARPAIRLAALMKLPVIYVYTHDSIGVGEDGPTHQPIEQLASLRAIPNLS 483 (653)
T ss_pred HHHHHHHHHHHHHcC-CCeEEEEEhHHHHHHHHHHHHHHHhcCCCEEEEEeCCccCCCCCCcccCCHHHHHHHhcCCCCE
Confidence 999999999999965 5999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCChHHHHHHHHHHHHcCCCcEEEEEcCCCcccccCCCcccccccccEEEecCCCCCCCcEEEEEeCchHHHHHHHH
Q 006816 454 AFRPADGNETAGSYRVAIANRDVPSVIALSRQKIAANLEGTSADEVERGGYIVSDNSSENKPEIILIGTGTELSLCEGTA 533 (630)
Q Consensus 454 v~~P~d~~e~~~~l~~a~~~~~~P~~ir~~r~~~~~~~~~~~~~~~~~G~~~~~~~~~~G~~dvtiva~G~~v~~a~~aa 533 (630)
|++|+|++|++.++++++++.++|+|||++|++. |.++......+..|+|+++. .+| +|||||++|+||++|++|+
T Consensus 484 v~~PaD~~E~~~~~~~a~~~~~gP~~irl~r~~~-~~~~~~~~~~~~~G~~vl~~--~~g-~dv~iia~G~~v~~al~Aa 559 (653)
T TIGR00232 484 VWRPCDGNETAAAWKYALESQDGPTALILSRQNL-PQLEESSLEKVLKGGYVLKD--SKG-PDIILIATGSEVSLAVEAA 559 (653)
T ss_pred EEeeCCHHHHHHHHHHHHhcCCCcEEEEEcCCcc-CCCCcccccccCCCcEEEEe--cCC-CCEEEEEeChHHHHHHHHH
Confidence 9999999999999999995558999999999988 76654322457788888864 237 9999999999999999999
Q ss_pred HHHHhcCCceEEEEcccccccCcccHHHHhccCCCCCeeEEEEecCCcccccccccCcceEEEeccCCCCCCHHHHHHHc
Q 006816 534 KTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLPSRVVKRVSVEAGSSVGWREYVGVEGKVIGVEEFGASGAYLDTFKKY 613 (630)
Q Consensus 534 ~~L~~~gi~~~Vi~~~~i~pld~~~~~~~~~v~~~~~~~~v~vEe~~~~g~~~~~~~~~~~~g~d~f~~~g~~~~l~~~~ 613 (630)
+.|+++||+++|||++|++|||+|..+++.++.++...+ |++|+++..||..+.....+++|+|.|+.+|+.++|+++|
T Consensus 560 ~~L~~~Gi~~~VI~~~~ikpld~~~~~~~~~~~~~~~~v-vtvEe~~~~g~~~~~~~~~~~igvd~fg~sg~~~~L~~~~ 638 (653)
T TIGR00232 560 KKLAAENIKVRVVSMPSFDLFDKQDEEYRESVLPANVTR-LAVEAGAADEWYKYAGLVGAILGMDSFGESAPGDKLFEEF 638 (653)
T ss_pred HHHHhcCCcEEEEecccCcccccCCHHHHHHHhcccCce-EEEecccHhHHHHhcCCcceEEEecCCcCCCCHHHHHHHh
Confidence 999999999999999999999999877777777766455 9999999988864443223679999999999999999999
Q ss_pred CCChHHHHHHHHHhh
Q 006816 614 GFTIDNVTKVARSLL 628 (630)
Q Consensus 614 gl~~~~I~~~i~~~l 628 (630)
|||+++|+++|++++
T Consensus 639 Glt~e~I~~~i~~~~ 653 (653)
T TIGR00232 639 GFTVENVVAKAKKLL 653 (653)
T ss_pred CCCHHHHHHHHHHhC
Confidence 999999999998864
No 6
>PTZ00089 transketolase; Provisional
Probab=100.00 E-value=1.4e-119 Score=1022.31 Aligned_cols=616 Identities=48% Similarity=0.822 Sum_probs=538.7
Q ss_pred hHHHHHhhcCCCCCCCcccHHHHHHHHHHHhhccCCCCCCCCCCCeEEecCcChhHHHHHHHHHcCCCCCCHHHHhhhhh
Q 006816 2 LIVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQYVCLHLAGFQSVQLEDLKRLCK 81 (630)
Q Consensus 2 ~~~~~~~~~~~GH~g~~ls~~~~~~~L~~~~~~~d~~~~~~~~~Dr~v~s~gH~~~~~y~~~~l~G~~~~~~~~l~~~r~ 81 (630)
++++|+.++++||+|++||++|++++||+.+|+|||+||.|++|||||||+||+++++|++|+++|+. ++.++|++||+
T Consensus 16 ~~~~~~~~a~~GH~g~~ls~~ei~~~L~~~~l~~~~~~~~~~~rDr~vls~GH~~~~lYa~l~l~G~~-~~~~~l~~fr~ 94 (661)
T PTZ00089 16 LSADLVQKANSGHPGAPMGMAPIAHILWSEVMKYNPKDPRWINRDRFVLSNGHASALLYSMLHLTGYD-LSMEDLKNFRQ 94 (661)
T ss_pred HHHHHHHhcCCCCcchhhHHHHHHHHHHHHhhcCCCcCCCCCCCCEEEEeCcchHHHHHHHHHHcCCC-CCHHHHHhcCC
Confidence 68999999999999999999999999999899999999999999999999999999999999999987 89999999999
Q ss_pred cCCCCCCCCCCCCcCcccccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHH
Q 006816 82 MGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAH 161 (630)
Q Consensus 82 ~~s~~~g~p~~~~~~~~~~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~ 161 (630)
.+|.++|||++..+||+++++|++|+|++.|+|+|+|.|+++++||+++++..+++|||++|||+++||++|||+++|+.
T Consensus 95 ~~s~~~ghp~~~~~~gv~~~tG~lG~gls~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~v~GDG~l~eG~~~EAl~~A~~ 174 (661)
T PTZ00089 95 LGSRTPGHPERHITPGVEVTTGPLGQGIANAVGLAIAEKHLAAKFNRPGHPIFDNYVYVICGDGCLQEGVSQEALSLAGH 174 (661)
T ss_pred CCCCCCCCCCCCCCCCcccCCcchhhhHHHHHHHHHHHHHHhhhccCccccCcCCEEEEEECccchhhHHHHHHHHHHHH
Confidence 99999999998789999999999999999999999999999988998766667899999999999999999999999999
Q ss_pred cCCCcEEEEEECCCCcccccccccChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeecccccC
Q 006816 162 WKLNKLTLIYDDNHNTIDGPTSLVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRERVN 241 (630)
Q Consensus 162 ~~L~~li~i~~~N~~~i~~~~~~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~~~g 241 (630)
++|+||++|+|||+++|++++.....+++.++|++|||+++.|+|||+|+++|.+|+++|++..++|++|+++|+||+ |
T Consensus 175 ~~L~nLi~i~d~N~~~i~~~~~~~~~~~~~~~f~a~G~~~i~v~dG~~D~~~l~~a~~~a~~~~~~P~~I~~~T~kG~-G 253 (661)
T PTZ00089 175 LGLEKLIVLYDDNKITIDGNTDLSFTEDVEKKYEAYGWHVIEVDNGNTDFDGLRKAIEEAKKSKGKPKLIIVKTTIGY-G 253 (661)
T ss_pred hCCCCEEEEEECCCcccccCcccccCccHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEEeeecC-C
Confidence 999999999999999999999877788999999999999999889955999999999999863369999999999998 8
Q ss_pred cccCC---------------------------CCCCChHHHHHHHHhhhhchhHHHHHHHHHHhhhhcCCchhHhHHHHh
Q 006816 242 WVDRD---------------------------QFHVIPMVYREMQIQTDHGERLEKEWCSKVYNYRSKYPHEGAELDLLL 294 (630)
Q Consensus 242 ~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (630)
+...+ .|.+++++++.|....+++.....+|...+.++...+|+..+++.+.+
T Consensus 254 ~~~e~~~~~H~~~~~~~~~~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~~ 333 (661)
T PTZ00089 254 SSKAGTEKVHGAPLGDEDIAQVKELFGLDPEKKFHVSEEVRQFFEQHVEKKKENYEAWKKRFAKYTAAFPKEAQAIERRF 333 (661)
T ss_pred CCcCCCCCccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHCHHHHHHHHHHh
Confidence 53221 122333344444332222334556898888888888888888887777
Q ss_pred cCCCCCCccccCCCCCCCCCCchHHHHHHHHHHHHHHhCCCeEEEecCCCCCcccccccccCcCCCCCCC-CCccccccc
Q 006816 295 NGGLLPGWENALPKWSTSDPLDATRGYSEKCLNQLAKVLPGLIGGSADLASSNKAYLLGYHDFSQPDSPW-GRNIRYGVR 373 (630)
Q Consensus 295 ~~~~p~~~~~~~~~~~~~~~~~~~r~a~~~~L~~l~~~~~~iv~~~aD~~~s~~~~~~~~~~f~~~~~~p-~R~~~~gIa 373 (630)
.+.+|.++...+++|...++..+||++++++|.++++.+|+++++++|+..|+++..+....| + +.|| +||||+|||
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~a~R~~~g~~L~~la~~~~~~~~~saDl~~s~~~~~~~~~~f-~-~~~P~~rfi~~GIa 411 (661)
T PTZ00089 334 KGELPPGWEKKLPKYTTNDKAIATRKASENVLNPLFQILPELIGGSADLTPSNLTRPKEANDF-T-KASPEGRYIRFGVR 411 (661)
T ss_pred ccCCchhhhhhhhhhcccCcchHHHHHHHHHHHHHHhhCCCeEEEECCCCcccCcCCcccccc-c-ccCCCCCeeeeeec
Confidence 777777665556666434466899999999999999999999999999998887554444568 4 5799 899999999
Q ss_pred hHHHHHHHHHHHhcCCCCceEeeehHHHHHhhHHHHHHhcccCCCeEEEEecCCCCCCCCCCCCCChhhhHHhhcCCCcE
Q 006816 374 EHAMAGISNGVALHGGGLIPFAATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAVPRLL 453 (630)
Q Consensus 374 E~~~vg~a~GlA~~G~~~~pv~~~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~~g~~G~tHq~~~d~a~l~~iP~l~ 453 (630)
||+|+++|+|||++| |++||+++|++|++|++||||+.|+|++||+|++||+|+++|+||+|||++||+++||+||||+
T Consensus 412 Eq~mv~~AaGlA~~~-G~~P~~~tf~~Fl~Ra~dqir~~al~~lpV~~v~thdg~~~g~DG~THq~iedia~lR~iPn~~ 490 (661)
T PTZ00089 412 EHAMCAIMNGIAAHG-GFIPFGATFLNFYGYALGAVRLAALSHHPVIYVATHDSIGLGEDGPTHQPVETLALLRATPNLL 490 (661)
T ss_pred HHHHHHHHHHHHHcC-CCeEEEEehHHHHHHHHHHHHHHHhcCCCeEEEEeCCceecCCCCCCcccHHHHHHHhcCCCcE
Confidence 999999999999954 4999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCChHHHHHHHHHHHHcCCCcEEEEEcCCCcccccCCCcccccccccEEEecCCCCCCCcEEEEEeCchHHHHHHHH
Q 006816 454 AFRPADGNETAGSYRVAIANRDVPSVIALSRQKIAANLEGTSADEVERGGYIVSDNSSENKPEIILIGTGTELSLCEGTA 533 (630)
Q Consensus 454 v~~P~d~~e~~~~l~~a~~~~~~P~~ir~~r~~~~~~~~~~~~~~~~~G~~~~~~~~~~G~~dvtiva~G~~v~~a~~aa 533 (630)
|++|+|++|++.+|++++++.++|+|||++|+++ +.++......+..|.|++++. +++ +|++||++|+++.+|++|+
T Consensus 491 V~~PaD~~E~~~~l~~al~~~~gP~~irl~R~~~-~~~~~~~~~~~~~g~~vl~~~-~~~-~dv~iia~G~~v~~Al~Aa 567 (661)
T PTZ00089 491 VIRPADGTETSGAYALALANAKTPTILCLSRQNT-PPLPGSSIEGVLKGAYIVVDF-TNS-PQLILVASGSEVSLCVEAA 567 (661)
T ss_pred EEecCCHHHHHHHHHHHHHcCCCCEEEEecCCCC-CCcCCCccccccCceEEEecc-CCC-CCEEEEeeCHHHHHHHHHH
Confidence 9999999999999999996558999999999988 766543222233455777651 114 7999999999999999999
Q ss_pred HHHHhcCCceEEEEcccccccCcccHHHHhccCC-CCCeeEEEEecCCcccccccccCcceEEEeccCCCCCCHHHHHHH
Q 006816 534 KTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLP-SRVVKRVSVEAGSSVGWREYVGVEGKVIGVEEFGASGAYLDTFKK 612 (630)
Q Consensus 534 ~~L~~~gi~~~Vi~~~~i~pld~~~~~~~~~v~~-~~~~~~v~vEe~~~~g~~~~~~~~~~~~g~d~f~~~g~~~~l~~~ 612 (630)
+.|++ ||+++|||++|++|||.+.+.++.+++. .+..+ |++|++...||..+. .+++|++.|+.+|+.++|+++
T Consensus 568 ~~L~~-Gi~~~Vv~~~~ikp~d~~~~~~~~~v~~e~~~~~-vtiE~~~~~g~~~~~---~~~igv~~Fg~sg~~~~l~~~ 642 (661)
T PTZ00089 568 KALSK-ELNVRVVSMPCWELFDQQSEEYQQSVLPSGGVPV-LSVEAYVSFGWEKYS---HVHVGISGFGASAPANALYKH 642 (661)
T ss_pred HHHhc-CCCeEEEeCCCccHHHHHHHHHHHHhcCCCCCce-EeHHhhHHHHHHhcC---CeEEECCCccccCCHHHHHHH
Confidence 99999 9999999999999999999888777777 44445 999999999986542 257999559999999999999
Q ss_pred cCCChHHHHHHHHHhhhC
Q 006816 613 YGFTIDNVTKVARSLLSE 630 (630)
Q Consensus 613 ~gl~~~~I~~~i~~~l~~ 630 (630)
+|||+++|+++|++++.+
T Consensus 643 ~Gl~~e~I~~~i~~~l~~ 660 (661)
T PTZ00089 643 FGFTVENVVEKARALAAR 660 (661)
T ss_pred hCCCHHHHHHHHHHHhhh
Confidence 999999999999998754
No 7
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.2e-114 Score=911.70 Aligned_cols=592 Identities=40% Similarity=0.647 Sum_probs=511.4
Q ss_pred hHHHHHhhcCCCCCCCcccHHHHHHHHHHHhhccCCCCCCCCCCCeEEecCcChhHHHHHHHHHcCCCCCCHHHHhhhhh
Q 006816 2 LIVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQYVCLHLAGFQSVQLEDLKRLCK 81 (630)
Q Consensus 2 ~~~~~~~~~~~GH~g~~ls~~~~~~~L~~~~~~~d~~~~~~~~~Dr~v~s~gH~~~~~y~~~~l~G~~~~~~~~l~~~r~ 81 (630)
+++++++++++||+++++|+++++++||..+|||+|.+|.|++|||||||+||+||+||++++|+|+ ++.++|++|||
T Consensus 20 ~si~~~~~a~sghp~s~~s~A~~~~vlf~~~mr~~~~~p~~~n~Drfvls~GHa~~llYa~~~l~G~--~~~edl~~~Rq 97 (632)
T KOG0523|consen 20 LSIDATSAAKSGHPGSPLSLAPIMHVLFFEVMRYNPADPYWFNRDRFVLSNGHACPLLYAHWHLAGY--DREEDLKNFRQ 97 (632)
T ss_pred hhHHHHHhhhcCCCCCccccchhhhhhhhhheecccCCcCCCCCceEEEeccccchHHHHHHHHhcc--CcHHHHHHHHh
Confidence 6899999999999999999999999999999999999999999999999999999999999999999 89999999999
Q ss_pred cCCCCCCCCCCCCcCcccccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHH
Q 006816 82 MGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAH 161 (630)
Q Consensus 82 ~~s~~~g~p~~~~~~~~~~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~ 161 (630)
.+|.++|||+ .++|+++++||++||||+.|+|||++.|+++. .+.+|||++|||+++||++|||+++|++
T Consensus 98 ~~s~t~ghp~-~~~~~v~v~TG~lgQgis~a~GmA~~~k~~~k---------~~~rv~~vlGDG~~~eG~~~EA~s~Ag~ 167 (632)
T KOG0523|consen 98 IGSDTPGHPE-PELPGVEVATGPLGQGISNAVGMAYAGKHLGK---------ASNRVYCVLGDGCLTEGSVWEAMSLAGH 167 (632)
T ss_pred hCCCCCCCCc-ccCCCceeccCCccchHHHHHHHHHHHHhhcc---------ccceEEEEEcCchhccchHHHHHhhhhh
Confidence 9999999999 68999999999999999999999999998872 3789999999999999999999999999
Q ss_pred cCCCcEEEEEECCCCcccccccccChhcHHH-HHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeeccccc
Q 006816 162 WKLNKLTLIYDDNHNTIDGPTSLVLSEDISA-RFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRERV 240 (630)
Q Consensus 162 ~~L~~li~i~~~N~~~i~~~~~~~~~~~~~~-~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~~~ 240 (630)
++|+|+++|+|+|..++++++...+.+|+.+ ++++|||++..| ||+ |++++.+++.+|+...++|+.|.++|++|+
T Consensus 168 l~ldnLVai~D~n~is~~g~t~~~~~~dV~~~r~ea~g~~~~~V-~~~-d~d~i~ka~~~a~~~k~kpt~i~~~t~~g~- 244 (632)
T KOG0523|consen 168 LKLDNLVAIYDNNKISIDGATSLGFDEDVYQLRFEAFGWNVIIV-DGG-DVDEIRKAIGKAKSVKGKPTAIKATTFIGR- 244 (632)
T ss_pred cccCCEEEEEccccccCCCCCcccccccHHHHHHHHhCceEEEE-cCc-CHHHHHHHHhhhhhccCCceeeeeeeeeec-
Confidence 9999999999999999999999888899888 999999999998 999 999999999999755689999999999998
Q ss_pred CcccCC---CC--CCChHHHHHHHHhhhhchhHHHHHHHHHHhhhhcCCchhHhHHHHhcCCCCCCccccCCCCCCCCCC
Q 006816 241 NWVDRD---QF--HVIPMVYREMQIQTDHGERLEKEWCSKVYNYRSKYPHEGAELDLLLNGGLLPGWENALPKWSTSDPL 315 (630)
Q Consensus 241 g~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 315 (630)
|....+ .| +.+++.++..++.. +.+ ...+. +.+-...+|+...+..+......|..|+...|.|+.+++.
T Consensus 245 G~~~ig~~~~Hg~pl~~~~~~~~k~~~--~~P-~~~~~--v~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~p~yk~~Dk~ 319 (632)
T KOG0523|consen 245 GSPYIGSESVHGAPLGEDDVERVKSIK--GLP-VLIFV--VPEKVKLYPEKPVEDARAISVRIPKIWEKSLPTYKVGDKA 319 (632)
T ss_pred CccccccccccCCcchhhHHHHHHhhc--CCc-ceeEE--eccccccCCCcccccccccccCcCccccccCCccccCChh
Confidence 874222 12 23333333333211 000 00000 0000123454444444444556677788889999988888
Q ss_pred chHHHHHHHHHHHHHHhCCCeEEEecCCCCCcccccccccCcCCCCCCCCCccccccchHHHHHHHHHHHhcCCCCceEe
Q 006816 316 DATRGYSEKCLNQLAKVLPGLIGGSADLASSNKAYLLGYHDFSQPDSPWGRNIRYGVREHAMAGISNGVALHGGGLIPFA 395 (630)
Q Consensus 316 ~~~r~a~~~~L~~l~~~~~~iv~~~aD~~~s~~~~~~~~~~f~~~~~~p~R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~ 395 (630)
++||+.++++|.++++.+|+++++++|+..|+.+.+ | +++||+|||++|||||||+++|+|+|..| .++||+
T Consensus 320 ~Atrk~~~~aL~~l~~~~~~vI~~~ad~~~st~td~-----~--~~~~p~R~i~~giaEq~mv~ia~G~a~~g-~~~Pf~ 391 (632)
T KOG0523|consen 320 VATRKAFGEALAALAEADPRVIGGSADLKNSTLTDF-----F--PKRFPERFIECGIAEQNMVGIANGIACRG-RTIPFC 391 (632)
T ss_pred hhHHHHHHHHHHHHhhcCcCeEEEecccCCCchhhh-----c--cccCccceEEEeeehhhhHHhhhchhcCC-Cccchh
Confidence 999999999999999999999999999999998643 4 57999999999999999999999999999 359999
Q ss_pred eehHHHHHhhHHHHHHhcccCCCeEEEEecCCCCCCCCCCCCCChhhhHHhhcCCCcEEEecCChHHHHHHHHHHHHcCC
Q 006816 396 ATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAVPRLLAFRPADGNETAGSYRVAIANRD 475 (630)
Q Consensus 396 ~~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~~g~~G~tHq~~~d~a~l~~iP~l~v~~P~d~~e~~~~l~~a~~~~~ 475 (630)
.||+.|++||+||+|+.++.+.+++++++|+++++|+||||||++||+++||+|||++|++|+|++|+..++..|++.++
T Consensus 392 ~tf~~F~trA~dqvr~~a~s~~~v~~v~th~~i~~GeDGPth~~iedlA~frsiPn~~v~~PaD~~et~~av~~Aa~~~~ 471 (632)
T KOG0523|consen 392 GTFAAFFTRAFDQVRMGALSQANVIYVATHDSIGLGEDGPTHQPIEDLAMFRSIPNMIVFRPADGNETENAVATAANTKG 471 (632)
T ss_pred HHHHHHHHHhhhheeehhhccCCcEEEEEeccccccCCCcccccHHHHHHHHhCCCceEEecCchHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999866
Q ss_pred CcEEEEEcCCCcccccCCCcccccccccEEEecCCCCCCCcEEEEEeCchHHHHHHHHHHHHhcCCceEEEEcccccccC
Q 006816 476 VPSVIALSRQKIAANLEGTSADEVERGGYIVSDNSSENKPEIILIGTGTELSLCEGTAKTLRQEGRRVRVVSLVCWRLFD 555 (630)
Q Consensus 476 ~P~~ir~~r~~~~~~~~~~~~~~~~~G~~~~~~~~~~G~~dvtiva~G~~v~~a~~aa~~L~~~gi~~~Vi~~~~i~pld 555 (630)
.|.+++++|++. +.++..+.+.+-.|+|++.+ +++||+||+||++|++|++||+.|+++||+++|||++|+||||
T Consensus 472 ~p~i~~~~r~~~-~~~~~~~~~~igkg~~vl~~----~~~dV~LiG~Gs~v~~cl~AA~~L~~~gi~vrVvd~~~~kplD 546 (632)
T KOG0523|consen 472 TPSIRTLSRQNL-PIYNNTEIEEIGKGKYVLQE----VEPDVILIGTGSEVQECLEAAELLSEDGIKVRVVDPFTWKPLD 546 (632)
T ss_pred CeeEEEecCccc-cccCCCchhhhccccEEEec----CCCCEEEEeccHHHHHHHHHHHHHHhcCceEEEecccceeecc
Confidence 699999999998 87765555667778887776 4269999999999999999999999999999999999999999
Q ss_pred cccHHHHhccCCCCCeeEEEEecCCcccc---------cccccCcceEEEeccCCCCCCHHHHHHHcCCChHHHHHHHHH
Q 006816 556 RQPAEYKEKVLPSRVVKRVSVEAGSSVGW---------REYVGVEGKVIGVEEFGASGAYLDTFKKYGFTIDNVTKVARS 626 (630)
Q Consensus 556 ~~~~~~~~~v~~~~~~~~v~vEe~~~~g~---------~~~~~~~~~~~g~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~ 626 (630)
..++. .....+..++ .|+|++...|. +.|.+..+..+++++|+.||++.+|++.||+++++|++++++
T Consensus 547 ~~li~--~~~q~~e~ri-~v~ed~~~~gsi~~~~~a~~g~~~~~~~~~~~~~~~~~sG~p~ell~~fGit~~~Ia~~a~~ 623 (632)
T KOG0523|consen 547 VALIR--SLAQSHEYRI-SVLEDHVPAGSIEVAVTAAWGKYPGILVPSLGVDTFGRSGPPPELLKMFGITARHIAAAALS 623 (632)
T ss_pred hHHhh--hhhcccceeE-EEccCCCCCcchhheeeehhcccCCccceeeccccCCcCCCCHHHHHHhCCCHHHHHHHHHH
Confidence 87765 2222333344 77777766542 334333356799999999999999999999999999999999
Q ss_pred hhh
Q 006816 627 LLS 629 (630)
Q Consensus 627 ~l~ 629 (630)
++.
T Consensus 624 ~~~ 626 (632)
T KOG0523|consen 624 LIG 626 (632)
T ss_pred HHh
Confidence 875
No 8
>PRK05899 transketolase; Reviewed
Probab=100.00 E-value=1.3e-106 Score=918.16 Aligned_cols=598 Identities=49% Similarity=0.809 Sum_probs=502.7
Q ss_pred hHHHHHhhcCCCCCCCcccHHHHHHHHHHHhhccCCCCCCCCCCCeEEecCcChhHHHHHHHHHcCCCCCCHHHHhhhhh
Q 006816 2 LIVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQYVCLHLAGFQSVQLEDLKRLCK 81 (630)
Q Consensus 2 ~~~~~~~~~~~GH~g~~ls~~~~~~~L~~~~~~~d~~~~~~~~~Dr~v~s~gH~~~~~y~~~~l~G~~~~~~~~l~~~r~ 81 (630)
++++|+.++++||+|+++|++||+++||+.+|++||+||+|++|||||+|+||++|++|++++++|+. ++.++|.+||+
T Consensus 18 ~~~~~~~~~~~gH~g~~ls~~~i~~~L~~~~l~~~~~~~~~~~~Dr~i~s~GH~~~~~Ya~l~~~G~~-~~~~~l~~~~~ 96 (624)
T PRK05899 18 LSIDAVQKANSGHPGMPMGAADIAYVLWTRFLRHDPKNPKWPNRDRFVLSAGHGSMLLYSLLHLAGYD-LSIDDLKNFRQ 96 (624)
T ss_pred HHHHHHHHcCCCCccchHHHHHHHHHHHHHhhcCCCCCCCCCCCCEEEEEChhHHHHHHHHHHHcCCC-CCHHHHHHhcC
Confidence 57899999999999999999999999999899999999999999999999999999999999999986 88999999999
Q ss_pred cCCCCCCCCCCCCcCcccccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHH
Q 006816 82 MGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAH 161 (630)
Q Consensus 82 ~~s~~~g~p~~~~~~~~~~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~ 161 (630)
+++.++|||++..+|++++++|+||+++|+|+|+|+|.++++.+|++++.+..+++|||++|||++++|++|||+++|++
T Consensus 97 ~~~~~~~~p~~~~~~~~~~~~G~lG~gl~~AiG~Ala~~~~~~~~~~~~~~~~~~~v~~v~GDG~~~~g~~~Eal~~A~~ 176 (624)
T PRK05899 97 LGSKTPGHPEYGHTPGVETTTGPLGQGLANAVGMALAEKYLAALFNRPGLDIVDHYTYVLCGDGDLMEGISHEACSLAGH 176 (624)
T ss_pred CCCCCCCCCCCCCCCCeeeCCcchhhhHHHHHHHHHHHHHhhhhcCCccccCcCCeEEEEECcchhhchHHHHHHHHHHH
Confidence 99999999997778999999999999999999999999998877877655556899999999999999999999999999
Q ss_pred cCCCcEEEEEECCCCcccccccccChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeecccccC
Q 006816 162 WKLNKLTLIYDDNHNTIDGPTSLVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRERVN 241 (630)
Q Consensus 162 ~~L~~li~i~~~N~~~i~~~~~~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~~~g 241 (630)
++|||+++|+|||++++++++.....+++.+++++|||+++.| ||| |++++.++++++++ .++|++|+++|.|++ |
T Consensus 177 ~~L~~li~v~dnN~~~~~~~~~~~~~~~~~~~~~a~G~~~~~V-dG~-d~~~l~~al~~a~~-~~~P~vI~v~t~kg~-g 252 (624)
T PRK05899 177 LKLGNLIVIYDDNRISIDGPTEGWFTEDVKKRFEAYGWHVIEV-DGH-DVEAIDAAIEEAKA-STKPTLIIAKTIIGK-G 252 (624)
T ss_pred hCCCCEEEEEECCCCcccccccccccccHHHHhccCCCeEEEE-CCC-CHHHHHHHHHHHHh-cCCCEEEEEEeEecc-C
Confidence 9999999999999999999887656789999999999999998 999 99999999999987 689999999999999 9
Q ss_pred cccCCC----CCC--ChHHHHHHHHhhhhchhHHHHHHHHHHhhhhcCCchhHhHHHHhcCCCCCCccccCCCCCC--CC
Q 006816 242 WVDRDQ----FHV--IPMVYREMQIQTDHGERLEKEWCSKVYNYRSKYPHEGAELDLLLNGGLLPGWENALPKWST--SD 313 (630)
Q Consensus 242 ~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~--~~ 313 (630)
++..+. |.. +++.++.+.+... |.. +..+...+....+.+.... +. ...+.|.. ..
T Consensus 253 ~~~~e~~~~~H~~~~~~~~~~~~~~~l~--------~~~---~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~ 316 (624)
T PRK05899 253 APNKEGTHKVHGAPLGAEEIAAAKKELG--------WDY---EPFEVPEEVYAHWRKAKER--GA---KAEAEWNEKFAG 316 (624)
T ss_pred CccccCCCcccCCCCCHHHHHHHHHHcC--------CCc---ccccCChHHHHHHHHhhhc--Cc---hhHHHHHHhhcc
Confidence 974432 111 2333333322110 000 0000000000011111100 00 00111100 02
Q ss_pred CCchHHHHHHHHHHHHHHhCCCeEEEecCCCCCcccccccccCcCCCCCCCCCccccccchHHHHHHHHHHHhcCCCCce
Q 006816 314 PLDATRGYSEKCLNQLAKVLPGLIGGSADLASSNKAYLLGYHDFSQPDSPWGRNIRYGVREHAMAGISNGVALHGGGLIP 393 (630)
Q Consensus 314 ~~~~~r~a~~~~L~~l~~~~~~iv~~~aD~~~s~~~~~~~~~~f~~~~~~p~R~~~~gIaE~~~vg~a~GlA~~G~~~~p 393 (630)
+..++|++++++|.+++++||+++++++|++.+++......+.| .+++||+||||+|||||+|+|+|+|||+.| +++|
T Consensus 317 ~~~~~~~a~~~~l~~l~~~~~~v~vl~~D~~~~~~~~~~~~~~f-~~~~~p~R~~d~GIaE~~~vg~A~GlA~~G-~~~p 394 (624)
T PRK05899 317 EKVATRKASGKALNALAKALPELVGGSADLAGSNNTKIKGSKDF-APEDYSGRYIHYGVREFAMAAIANGLALHG-GFIP 394 (624)
T ss_pred cchHHHHHHHHHHHHHHhhCCCEEEEeCCCccccCccccccccc-CccCCCCCeeeeChhHHHHHHHHHHHHHcC-CCeE
Confidence 46789999999999999999999999999987765542223345 335899999999999999999999999987 6999
Q ss_pred EeeehHHHHHhhHHHHHHhcccCCCeEEEEecCCCCCCCCCCCCCChhhhHHhhcCCCcEEEecCChHHHHHHHHHHHHc
Q 006816 394 FAATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAVPRLLAFRPADGNETAGSYRVAIAN 473 (630)
Q Consensus 394 v~~~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~~g~~G~tHq~~~d~a~l~~iP~l~v~~P~d~~e~~~~l~~a~~~ 473 (630)
|+++|++|++|+++|||+.|++++||+++++++|+++|.+|+|||++||+++||++|||+|++|+|++|++++++++++.
T Consensus 395 v~~t~~~F~~r~~~qir~~~~~~~pv~~v~~~~G~~~g~~G~tHq~~edia~~r~iP~~~V~~P~d~~e~~~~l~~a~~~ 474 (624)
T PRK05899 395 FGGTFLVFSDYARNAIRLAALMKLPVIYVFTHDSIGVGEDGPTHQPVEQLASLRAIPNLTVIRPADANETAAAWKYALER 474 (624)
T ss_pred EEEEcHHHHHHHHHHHHHHHhcCCCEEEEEECCCcCcCCCCCCcccHHHHHHHHhCCCcEEEeCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCcEEEEEcCCCcccccCCC-cccccccccEEEecCCCCCCCcEEEEEeCchHHHHHHHHHHHHhcCCceEEEEccccc
Q 006816 474 RDVPSVIALSRQKIAANLEGT-SADEVERGGYIVSDNSSENKPEIILIGTGTELSLCEGTAKTLRQEGRRVRVVSLVCWR 552 (630)
Q Consensus 474 ~~~P~~ir~~r~~~~~~~~~~-~~~~~~~G~~~~~~~~~~G~~dvtiva~G~~v~~a~~aa~~L~~~gi~~~Vi~~~~i~ 552 (630)
.++|+|||++|+.. +.+++. ....++.|++++++ | +|+|||++|+|+++|++|++.|+++||+++|||++|++
T Consensus 475 ~~~P~~ir~~r~~~-~~~~~~~~~~~~~~G~~~l~~----G-~dvtiia~G~~v~~al~Aa~~L~~~gi~~~VId~~sik 548 (624)
T PRK05899 475 KDGPSALVLTRQNL-PVLERTAQEEGVAKGGYVLRD----D-PDVILIATGSEVHLALEAADELEAEGIKVRVVSMPSTE 548 (624)
T ss_pred CCCCEEEEEeCCCC-CCcCCccccccccCCcEEEec----C-CCEEEEEeCHHHHHHHHHHHHHHhcCCcEEEEECCCcc
Confidence 57999999999887 655432 23568889877765 7 99999999999999999999999999999999999999
Q ss_pred ccCcccHHHHhccCCCCCeeEEEEecCCcccccccccCcceEEEeccCCCCCCHHHHHHHcCCChHHHHHHHHHhh
Q 006816 553 LFDRQPAEYKEKVLPSRVVKRVSVEAGSSVGWREYVGVEGKVIGVEEFGASGAYLDTFKKYGFTIDNVTKVARSLL 628 (630)
Q Consensus 553 pld~~~~~~~~~v~~~~~~~~v~vEe~~~~g~~~~~~~~~~~~g~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l 628 (630)
|||.+...+....+.+....+|++|++...||..++..+.+++|++.|+.+|+.++|++++|||+++|+++|++++
T Consensus 549 PlD~~e~h~~~~~lg~~~~~~v~~e~~~~~g~~~~~~~~~~~iGv~~f~~~g~~~~l~~~~gl~~~~I~~~i~~~~ 624 (624)
T PRK05899 549 LFDEQDAAYKESVLPAAVTARVAVEAGVADGWYKYVGLDGKVLGIDTFGASAPADELFKEFGFTVENIVAAAKELL 624 (624)
T ss_pred hhccCcHHHHhccccccccceEEEccCCccchhhhcCCCceEEECCCCCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Confidence 9999965555566643332238888888888877776678899994499999999999999999999999998864
No 9
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=100.00 E-value=3.3e-102 Score=825.28 Aligned_cols=533 Identities=22% Similarity=0.293 Sum_probs=457.8
Q ss_pred HHHHHhhcCCCCCCCcccHHHHHHHHHHHhhccCCCCCCCCCCCeEEecCcChhHHHHHHHHHcCCCCCCHHHHhhhhhc
Q 006816 3 IVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQYVCLHLAGFQSVQLEDLKRLCKM 82 (630)
Q Consensus 3 ~~~~~~~~~~GH~g~~ls~~~~~~~L~~~~~~~d~~~~~~~~~Dr~v~s~gH~~~~~y~~~~l~G~~~~~~~~l~~~r~~ 82 (630)
+++.|. +++||+|++||+||++.+||++ ||. +.|+|||+.|||+ |.|++||||. +++.+.||.
T Consensus 33 li~~vS-~~GGHlgsnLGvVELTiALH~V---F~s------P~D~~IwDVgHQa---YpHKiLTGR~----e~f~tlRq~ 95 (627)
T COG1154 33 LLEVVS-ATGGHLGSNLGVVELTIALHYV---FDS------PKDKLIWDVGHQA---YPHKILTGRR----EQFDTLRQK 95 (627)
T ss_pred HHHHhc-cCCCccCCCcChhhhhHHHHHH---hCC------CCCCeEEecCccc---chhHHhcCch----hhcchhhhc
Confidence 567775 7999999999999999999999 886 8999999999999 9999999994 889999999
Q ss_pred CCCCCCCCCCCCcCcccccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHc
Q 006816 83 GSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHW 162 (630)
Q Consensus 83 ~s~~~g~p~~~~~~~~~~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~ 162 (630)
++.+ |+|++.+++++.+.+|+.++++++|+|+|.|..+++ .+++|+|++|||+++.||.|||||.|+..
T Consensus 96 ~Gls-Gf~~r~ESe~D~f~~GHsSTSiSaalG~A~A~~~~g----------~~~~vvaVIGDGAlt~GmA~EALN~ag~~ 164 (627)
T COG1154 96 DGLS-GFPKREESEHDWFGVGHSSTSISAALGMAKARDLKG----------EDRNVVAVIGDGALTGGMAFEALNNAGAD 164 (627)
T ss_pred CCCC-CCCCcccCCCcccccCchHHHHHHHhhHHHHHHhcC----------CCCcEEEEECCccccchHHHHHHhhhhhc
Confidence 9998 999999999999999999999999999999998776 78999999999999999999999999922
Q ss_pred CCCcEEEEEECCCCcccccccccC--------h-------hc----------------------H------HHHHHhCCC
Q 006816 163 KLNKLTLIYDDNHNTIDGPTSLVL--------S-------ED----------------------I------SARFKSLGW 199 (630)
Q Consensus 163 ~L~~li~i~~~N~~~i~~~~~~~~--------~-------~~----------------------~------~~~~~a~G~ 199 (630)
.-.++++|+|||+++|+.++.-.. . +. + ..+|+.+|+
T Consensus 165 ~~~~~iVILNDNeMSIs~nvGal~~~L~~l~~~~~y~~~~~~~kk~l~~~~~~~~~~~~r~e~~~K~l~~~~~lFeelGf 244 (627)
T COG1154 165 LKSNLIVILNDNEMSISPNVGALSKHLARLRSGPFYQSLREGGKKVLSKVGPPLKRFAKRAEESIKGLLVPGTLFEELGF 244 (627)
T ss_pred cCCCEEEEEeCCCcccCCCccHHHHHHHHHhccchHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhcccCchhhHHHhCC
Confidence 226799999999999998875210 0 00 0 127899999
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeecccccCcccCCCCCCChHHHHHHHHhhhhchhHHHHHHHHHHhh
Q 006816 200 NTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRERVNWVDRDQFHVIPMVYREMQIQTDHGERLEKEWCSKVYNY 279 (630)
Q Consensus 200 ~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (630)
+|+.++||| |+++|..+|+.+|+ .++|++||+.|.||+ ||.|++.++ ..||..
T Consensus 245 ~YiGPiDGH-ni~~Li~~Lk~~kd-~~gPvllHv~T~KGK-GY~pAE~d~--------------------~~~H~v---- 297 (627)
T COG1154 245 NYIGPIDGH-NLEELIPTLKNAKD-LKGPVLLHVVTKKGK-GYKPAEEDP--------------------IKYHGV---- 297 (627)
T ss_pred eeECCcCCC-CHHHHHHHHHHHhc-CCCCEEEEEEecCCC-CCChhhcCh--------------------hhccCC----
Confidence 999999999 99999999999998 899999999999999 998887543 124321
Q ss_pred hhcCC-chhHhHHHHhcCCCCCCccccCCCCCCCCCCchHHHHHHHHHHHHHHhCCCeEEEecCCCCCcccccccccCcC
Q 006816 280 RSKYP-HEGAELDLLLNGGLLPGWENALPKWSTSDPLDATRGYSEKCLNQLAKVLPGLIGGSADLASSNKAYLLGYHDFS 358 (630)
Q Consensus 280 ~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~r~a~~~~L~~l~~~~~~iv~~~aD~~~s~~~~~~~~~~f~ 358 (630)
.+.++ +. +..++. .....++.++|+++|.+++++|++|+.+|+.+...++. ..|
T Consensus 298 ~~f~~~~t---------g~~~~~----------~~~~~sys~vf~~~L~~~a~~d~~ivaITaAM~~gtGL-----~~F- 352 (627)
T COG1154 298 GPFDPIET---------GQSKKS----------KPSAPSYTKVFGDTLCELAAKDEKIVAITAAMPEGTGL-----VKF- 352 (627)
T ss_pred CCCCcccc---------CccCCC----------CCCCCCHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCh-----HHH-
Confidence 11111 11 111100 01233566799999999999999999999999876653 457
Q ss_pred CCCCCCCCccccccchHHHHHHHHHHHhcCCCCceEeeehHHHHHhhHHHH-HHhcccCCCeEEEEecCCCC-CCCCCCC
Q 006816 359 QPDSPWGRNIRYGVREHAMAGISNGVALHGGGLIPFAATFLIFSDYMKNSI-RLSALSHAGVIYILTHDSIG-LGEDGPT 436 (630)
Q Consensus 359 ~~~~~p~R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~~~~~F~~~a~dqi-~~~a~~~~pv~~v~~~~g~~-~g~~G~t 436 (630)
+ ++||+||||+||||||+|++|+|||..| ++||+++||+|+||+|||+ ++.|+|++||+|+. |+.| +|.||+|
T Consensus 353 ~-~~fP~R~fDVGIAEQHAVT~AAGlA~~G--~kPvvaIYSTFLQRAYDQliHDvaiqnLPV~faI--DRAGivG~DG~T 427 (627)
T COG1154 353 S-KKFPDRFFDVGIAEQHAVTFAAGLAAEG--MKPVVAIYSTFLQRAYDQLIHDVAIQNLPVTFAI--DRAGIVGADGPT 427 (627)
T ss_pred H-HhCchhheehhhhHHHHHHHHHHHHhCC--CCCEEEEecHHHHHHHHHHHHHHHhccCCeEEEE--ecCcccCCCCCc
Confidence 4 6999999999999999999999999999 9999999999999999995 67899999999996 7777 8999999
Q ss_pred CCChhhhHHhhcCCCcEEEecCChHHHHHHHHHHHHcCCCcEEEEEcCCCcccccCC-CcccccccccEEEecCCCCCCC
Q 006816 437 HQPVEQLAGLRAVPRLLAFRPADGNETAGSYRVAIANRDVPSVIALSRQKIAANLEG-TSADEVERGGYIVSDNSSENKP 515 (630)
Q Consensus 437 Hq~~~d~a~l~~iP~l~v~~P~d~~e~~~~l~~a~~~~~~P~~ir~~r~~~~~~~~~-~~~~~~~~G~~~~~~~~~~G~~ 515 (630)
||+++|+++||+||||.|++|+|++|++.||++++.+.++|++|||||++. +.... .....+++|+|++++ + | .
T Consensus 428 H~G~fDls~l~~iPnmvi~aP~de~el~~ml~ta~~~~~gP~AiRyPrg~~-~~~~~~~~~~~~~~Gk~~i~~--~-G-~ 502 (627)
T COG1154 428 HQGLFDLSFLRCIPNMVIMAPRDEEELRQMLYTALAQDDGPVAIRYPRGNG-VGVILTPELEPLEIGKGELLK--E-G-E 502 (627)
T ss_pred cccHHHHHHHhcCCCcEEecCCCHHHHHHHHHHHHhcCCCCeEEEecCCCC-CCCCcccccccccccceEEEe--c-C-C
Confidence 999999999999999999999999999999999999855899999999976 33322 124568999999998 5 7 9
Q ss_pred cEEEEEeCchHHHHHHHHHHHHhcCCceEEEEcccccccCcccHHHHhccCCCCCeeEEEEecCCcccc-c----ccc--
Q 006816 516 EIILIGTGTELSLCEGTAKTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLPSRVVKRVSVEAGSSVGW-R----EYV-- 588 (630)
Q Consensus 516 dvtiva~G~~v~~a~~aa~~L~~~gi~~~Vi~~~~i~pld~~~~~~~~~v~~~~~~~~v~vEe~~~~g~-~----~~~-- 588 (630)
||+||++|.++..|++|++.|.++||+++|||+|++||+|++.+. .+.+++. .+||+||+...|+ + +++
T Consensus 503 ~vail~~G~~~~~al~vae~L~~~Gi~~TVvd~rfvkPlD~~ll~---~La~~h~-~~vtlEe~~~~GG~Gs~v~efl~~ 578 (627)
T COG1154 503 KVAILAFGTMLPEALKVAEKLNAYGISVTVVDPRFVKPLDEALLL---ELAKSHD-LVVTLEENVVDGGFGSAVLEFLAA 578 (627)
T ss_pred cEEEEecchhhHHHHHHHHHHHhcCCCcEEEcCeecCCCCHHHHH---HHHhhcC-eEEEEecCcccccHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999998775 3455554 4599999997765 3 232
Q ss_pred ---cCcceEEEe-ccCCCCCCHHHHHHHcCCChHHHHHHHHHhhh
Q 006816 589 ---GVEGKVIGV-EEFGASGAYLDTFKKYGFTIDNVTKVARSLLS 629 (630)
Q Consensus 589 ---~~~~~~~g~-d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l~ 629 (630)
..+++++|+ |.|+++|+++++++.+|||++.|+++|.+++.
T Consensus 579 ~~~~~~v~~lglpd~fi~hg~~~el~~~~gLd~~~i~~~i~~~l~ 623 (627)
T COG1154 579 HGILVPVLNLGLPDEFIDHGSPEELLAELGLDAEGIARRILEWLK 623 (627)
T ss_pred cCCCCceEEecCChHhhccCCHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 247789999 99999999999999999999999999999875
No 10
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=100.00 E-value=2.6e-101 Score=867.04 Aligned_cols=532 Identities=22% Similarity=0.339 Sum_probs=452.2
Q ss_pred hHHHHHhhcCCCCCCCcccHHHHHHHHHHHhhccCCCCCCCCCCCeEEecCcChhHHHHHHHHHcCCCCCCHHHHhhhhh
Q 006816 2 LIVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQYVCLHLAGFQSVQLEDLKRLCK 81 (630)
Q Consensus 2 ~~~~~~~~~~~GH~g~~ls~~~~~~~L~~~~~~~d~~~~~~~~~Dr~v~s~gH~~~~~y~~~~l~G~~~~~~~~l~~~r~ 81 (630)
.+++|+. +++||+|++||++|++++||++ ||+ +|||||||+||++ |++|+++|+ . ++|.+||+
T Consensus 28 ~~i~~~~-~~~GH~g~~ls~vel~~aL~~~---~~~------~rDr~i~s~GH~~---Y~~~~~~G~--~--~~l~~~r~ 90 (617)
T TIGR00204 28 YLLESVS-ASGGHLASGLGTVELTVALHYV---FNT------PKDQFIWDVGHQA---YPHKLLTGR--R--EKFSTLRQ 90 (617)
T ss_pred HHHHHHh-ccCCCcCcchhHHHHHHHHHhh---CCC------CCCcEEEecchHH---HHHHHHhCc--H--HHhcchhh
Confidence 4788987 6999999999999999999975 565 8999999999999 999999998 3 88999999
Q ss_pred cCCCCCCCCCCCCcCcccccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHH
Q 006816 82 MGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAH 161 (630)
Q Consensus 82 ~~s~~~g~p~~~~~~~~~~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~ 161 (630)
.+| ++|||++.+++.+.+++|++|++++.|+|+|+|.|+++ .+.+|||++|||+++||++|||++.|+.
T Consensus 91 ~g~-l~g~p~~~e~~~d~~~~G~~g~~ls~a~G~A~a~~~~~----------~~~~v~~~~GDG~~~eG~~~Ea~~~a~~ 159 (617)
T TIGR00204 91 KKG-LHGFPKRSESEYDVFSAGHSSTSISAGLGIAVAAEKKG----------ADRKTVCVIGDGAITAGMAFEALNHAGD 159 (617)
T ss_pred cCC-cCCCCcCCCCCCCccCCCchHhHHHHHHHHHHHHHhhC----------CCCEEEEEECCcccccccHHHHHHHHHh
Confidence 999 66999976644555699999999999999999998876 6889999999999999999999999999
Q ss_pred cCCCcEEEEEECCCCcccccccccC-------------------------h---hc-HHHH--------------HHhCC
Q 006816 162 WKLNKLTLIYDDNHNTIDGPTSLVL-------------------------S---ED-ISAR--------------FKSLG 198 (630)
Q Consensus 162 ~~L~~li~i~~~N~~~i~~~~~~~~-------------------------~---~~-~~~~--------------~~a~G 198 (630)
++||+ ++|+|||++++++++.... . .+ +.++ |++||
T Consensus 160 ~~l~~-i~ii~~N~~~i~~~~~~~~~~l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~f~~~G 238 (617)
T TIGR00204 160 LKTDM-IVILNDNEMSISENVGALSNHLAQLRSGSLYQSLRDGLKKIFSKLPPIKNYLAKRTEESMKGLVVPGTFFEELG 238 (617)
T ss_pred cCCCE-EEEEECCCcccCCCchHHHHHHHHhhccchHHHHHHHHHHHHhcCcchhHHHHHHHHHhhhhccCccchHHHcC
Confidence 99985 9999999999998875210 0 01 3333 99999
Q ss_pred CeEE-EEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeecccccCcccCCCCCCChHHHHHHHHhhhhchhHHHHHHHHHH
Q 006816 199 WNTI-MVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRERVNWVDRDQFHVIPMVYREMQIQTDHGERLEKEWCSKVY 277 (630)
Q Consensus 199 ~~~~-~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (630)
|+++ .| ||| |+++|.++|+++++ .++|++||++|.||+ |+++.+.++ ..||..
T Consensus 239 ~~~~~~v-DGh-d~~~l~~al~~ak~-~~~P~~i~~~T~KGk-G~~~~e~~~--------------------~~~H~~-- 292 (617)
T TIGR00204 239 FNYIGPV-DGH-DLLELIETLKNAKK-LKGPVFLHIQTKKGK-GYKPAEKDP--------------------IGWHGV-- 292 (617)
T ss_pred CcEEccc-CCC-CHHHHHHHHHHHhc-CCCCEEEEEEecCCC-CCchhhcCh--------------------hhccCC--
Confidence 9999 56 999 99999999999987 688999999999999 987654321 113310
Q ss_pred hhhhcCCchhHhHHHHhcCCCCCCccccCCCCCCCCCCchHHHHHHHHHHHHHHhCCCeEEEecCCCCCcccccccccCc
Q 006816 278 NYRSKYPHEGAELDLLLNGGLLPGWENALPKWSTSDPLDATRGYSEKCLNQLAKVLPGLIGGSADLASSNKAYLLGYHDF 357 (630)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~r~a~~~~L~~l~~~~~~iv~~~aD~~~s~~~~~~~~~~f 357 (630)
...+++. +..| . ......+++++|+++|.+++++||+|+++++|+..+++ ++.|
T Consensus 293 --~~~~~~~---------~~~~--------~--~~~~~~~~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~-----~~~f 346 (617)
T TIGR00204 293 --GPFDLST---------GCLP--------K--SKSALPSYSKIFSDTLCELAKKDNKIVGITPAMPEGSG-----LDKF 346 (617)
T ss_pred --CCCChhh---------CCcC--------C--CCCCCccHHHHHHHHHHHHHhhCcCEEEEECCccCCcC-----hHHH
Confidence 0111110 1001 0 01123578999999999999999999999999965554 2457
Q ss_pred CCCCCCCCCccccccchHHHHHHHHHHHhcCCCCceEeeehHHHHHhhHHHHHH-hcccCCCeEEEEecCCCCCCCCCCC
Q 006816 358 SQPDSPWGRNIRYGVREHAMAGISNGVALHGGGLIPFAATFLIFSDYMKNSIRL-SALSHAGVIYILTHDSIGLGEDGPT 436 (630)
Q Consensus 358 ~~~~~~p~R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~~~~~F~~~a~dqi~~-~a~~~~pv~~v~~~~g~~~g~~G~t 436 (630)
+ ++||+||||+|||||+|+|+|+|||+.| ++||+++|++|++|+||||++ .|++++||+|+++++|+. |.||+|
T Consensus 347 -~-~~fP~R~~d~GIaEq~~vg~AaGlA~~G--~~Pvv~~~a~Fl~ra~dQi~~~~a~~~lpV~i~~~~~G~~-g~dG~t 421 (617)
T TIGR00204 347 -S-RKFPDRYFDVAIAEQHAVTFAAGMAIEG--YKPFVAIYSTFLQRAYDQVVHDVCIQKLPVLFAIDRAGIV-GADGET 421 (617)
T ss_pred -H-HHCccccccCCccHHHHHHHHHHHHHCC--CEEEEEecHHHHHHHHHHHHHHHHhcCCCEEEEEECCCcC-CCCCcc
Confidence 4 6899999999999999999999999999 999999999999999999987 599999999999888884 899999
Q ss_pred CCChhhhHHhhcCCCcEEEecCChHHHHHHHHHHHHcCCCcEEEEEcCCCcccccCC-CcccccccccEEEecCCCCCCC
Q 006816 437 HQPVEQLAGLRAVPRLLAFRPADGNETAGSYRVAIANRDVPSVIALSRQKIAANLEG-TSADEVERGGYIVSDNSSENKP 515 (630)
Q Consensus 437 Hq~~~d~a~l~~iP~l~v~~P~d~~e~~~~l~~a~~~~~~P~~ir~~r~~~~~~~~~-~~~~~~~~G~~~~~~~~~~G~~ 515 (630)
||+++|+++||+||||+|++|+|+.|++.+|++|++..++|+|||++|+.. +.++. ...+.+++|++++++ + | +
T Consensus 422 H~~~~dia~lr~iPgl~V~~Psd~~e~~~~l~~a~~~~~~Pv~ir~~r~~~-~~~~~~~~~~~~~~Gk~~vlr--~-G-~ 496 (617)
T TIGR00204 422 HQGAFDISYLRCIPNMVIMAPSDENELRQMLYTGYHYDDGPIAVRYPRGNA-VGVELTPEPEKLPIGKSEVLR--K-G-E 496 (617)
T ss_pred cccchHHHHHhcCCCcEEEeeCCHHHHHHHHHHHHhCCCCCEEEEEccCCc-CCcccCCccccccCCceEEEE--c-C-C
Confidence 999999999999999999999999999999999998635999999999876 44321 223568899999988 5 7 9
Q ss_pred cEEEEEeCchHHHHHHHHHHHHhcCCceEEEEcccccccCcccHHHHhccCCCCCeeEEEEecCCcccc-c----cc---
Q 006816 516 EIILIGTGTELSLCEGTAKTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLPSRVVKRVSVEAGSSVGW-R----EY--- 587 (630)
Q Consensus 516 dvtiva~G~~v~~a~~aa~~L~~~gi~~~Vi~~~~i~pld~~~~~~~~~v~~~~~~~~v~vEe~~~~g~-~----~~--- 587 (630)
|+|||+||.|++.|++|++.|+++||+++|||++|++|||++++. +++.+++ ++ ||+||+...|+ + ++
T Consensus 497 dvtIva~G~~v~~al~Aa~~L~~~gi~~~VId~~~lkPlD~e~i~--~~~~k~~-~v-vtvEE~~~~GGlGs~v~~~l~~ 572 (617)
T TIGR00204 497 KILILGFGTLVPEALEVAESLNEKGIEATVVDARFVKPLDEELIL--EIAASHE-KL-VTVEENAIMGGAGSAVLEFLMD 572 (617)
T ss_pred CEEEEEcCHHHHHHHHHHHHHHhcCCCEEEEecCcCCcCCHHHHH--HHHhhcC-eE-EEEECCCCccChHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999886 4555555 56 99999998664 3 11
Q ss_pred --ccCcceEEEe-ccCCCCCCHHHHHHHcCCChHHHHHHHHHhh
Q 006816 588 --VGVEGKVIGV-EEFGASGAYLDTFKKYGFTIDNVTKVARSLL 628 (630)
Q Consensus 588 --~~~~~~~~g~-d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l 628 (630)
+..+++++|+ |.|+++|++++|++++|||+++|+++|++++
T Consensus 573 ~~~~~~v~~ig~~d~~~~~g~~~~L~~~~Gl~~~~I~~~i~~~~ 616 (617)
T TIGR00204 573 QNKLVPVKRLGIPDFFIPHGTQEEVLAELGLDTAGMEAKILAWL 616 (617)
T ss_pred cCCCCCeEEEeCCCcCcCCCCHHHHHHHHCcCHHHHHHHHHHhh
Confidence 2457899999 8999999999999999999999999999876
No 11
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=7.3e-101 Score=858.66 Aligned_cols=535 Identities=20% Similarity=0.291 Sum_probs=446.2
Q ss_pred hHHHHHhhcCCCCCCCcccHHHHHHHHHHHhhccCCCCCCCCCCCeEEecCcChhHHHHHHHHHcCCCCCCHHHHhhhhh
Q 006816 2 LIVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQYVCLHLAGFQSVQLEDLKRLCK 81 (630)
Q Consensus 2 ~~~~~~~~~~~GH~g~~ls~~~~~~~L~~~~~~~d~~~~~~~~~Dr~v~s~gH~~~~~y~~~~l~G~~~~~~~~l~~~r~ 81 (630)
.+++|+.++ +||+|++||++||+++||+. ||. ++||||||+||++ |++++++|+ .++|.+|||
T Consensus 61 ~ii~~~~~~-~GH~g~~Ls~vel~~aL~~~---~~~------p~Dr~i~s~GH~a---y~~~~l~gr----~~~l~~~r~ 123 (677)
T PLN02582 61 DVIFNVSKT-GGHLGSSLGVVELTVALHYV---FNA------PQDKILWDVGHQS---YPHKILTGR----RDKMHTMRQ 123 (677)
T ss_pred HHHHHHHhc-CCCcCccccHHHHHHHHHHh---hCC------CCCeEEEECcchH---HHHHHHHcc----HHHhccccc
Confidence 468899855 79999999999999999975 442 4699999999999 999999998 378999999
Q ss_pred cCCCCCCCCCCCCcCcccccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHH
Q 006816 82 MGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAH 161 (630)
Q Consensus 82 ~~s~~~g~p~~~~~~~~~~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~ 161 (630)
.+| +.|||++.++|++++++|++|++++.|+|+|+|.|+++ .+++|||++|||++++|++|||++.|+.
T Consensus 124 ~g~-l~g~p~~~e~~~~~~~~G~~g~~ls~a~G~A~a~~~~~----------~~~~v~~viGDG~~~~G~~~Ealn~a~~ 192 (677)
T PLN02582 124 TNG-LSGFTKRAESEYDCFGTGHSSTTISAGLGMAVGRDLKG----------KKNNVVAVIGDGAMTAGQAYEAMNNAGY 192 (677)
T ss_pred CCC-cCCCCCCCCCCCceeccchhhhhHHHHHHHHHHHHhcC----------CCCEEEEEecccccchhhHHHHHHHHHh
Confidence 999 67999988899999999999999999999999998765 6789999999999999999999999999
Q ss_pred cCCCcEEEEEECCCC-cc--------ccccccc--------Ch---------------------hcHH------------
Q 006816 162 WKLNKLTLIYDDNHN-TI--------DGPTSLV--------LS---------------------EDIS------------ 191 (630)
Q Consensus 162 ~~L~~li~i~~~N~~-~i--------~~~~~~~--------~~---------------------~~~~------------ 191 (630)
+++| +++|+|||++ +| +.++... .. .++.
T Consensus 193 ~~~~-li~iv~~N~~~s~~~~~~~s~~~~vg~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~ 271 (677)
T PLN02582 193 LDSD-MIVILNDNKQVSLPTATLDGPAPPVGALSSALSRLQSSRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMIS 271 (677)
T ss_pred hCcC-EEEEEECCCCccccccccCCCCCCccHHHHHHHHHhcchhHHHHHHHHHHHHHhCcHhHHHHHHHHHHHhhhccC
Confidence 9975 9999999998 33 2222111 00 1111
Q ss_pred ----HHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcC-CCcEEEEEeecccccCcccCCCCCCChHHHHHHHHhhhhch
Q 006816 192 ----ARFKSLGWNTIMVENIHDNLSSFKEALMAAANET-KKPTFIRVKKMRERVNWVDRDQFHVIPMVYREMQIQTDHGE 266 (630)
Q Consensus 192 ----~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~-~~P~~i~~~t~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (630)
.+|++|||+|+.++||| |+++|.++|+++++.. ++|++||++|.||+ |+++++..+
T Consensus 272 ~~~~~~fe~~G~~y~g~iDGH-d~~~L~~al~~~k~~~~~~P~vihv~T~KGk-G~~~ae~~~----------------- 332 (677)
T PLN02582 272 GSGSTLFEELGLYYIGPVDGH-NIDDLVTILREVKSTKTTGPVLIHVVTEKGR-GYPYAERAA----------------- 332 (677)
T ss_pred ccccchHHHcCCeEEeeeCCC-CHHHHHHHHHHHHhcCCCCCEEEEEEecCCC-CCChhhcCh-----------------
Confidence 25899999999777999 9999999999999722 59999999999999 998776432
Q ss_pred hHHHHHHHHHHhhhhcCCchhHhHHHHhcCCCCCCccccCCCCCCCCCCchHHHHHHHHHHHHHHhCCCeEEEecCCCCC
Q 006816 267 RLEKEWCSKVYNYRSKYPHEGAELDLLLNGGLLPGWENALPKWSTSDPLDATRGYSEKCLNQLAKVLPGLIGGSADLASS 346 (630)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~r~a~~~~L~~l~~~~~~iv~~~aD~~~s 346 (630)
..||.. ...+++.. .. .+ ......++.++|+++|.+++++||+|+++++|++++
T Consensus 333 ---~~~H~~----~~f~~~~g---------~~-------~~---~~~~~~~~s~a~~~aL~~~a~~d~~vv~ita~m~g~ 386 (677)
T PLN02582 333 ---DKYHGV----VKFDPATG---------KQ-------FK---VKAKTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGG 386 (677)
T ss_pred ---hhcCCC----CCCCcccC---------Cc-------cC---CCCCCcCHHHHHHHHHHHHHccCCCEEEEeCCCCCc
Confidence 123321 11111111 00 00 001123567799999999999999999999999777
Q ss_pred cccccccccCcCCCCCCCCCccccccchHHHHHHHHHHHhcCCCCceEeeehHHHHHhhHHHHHH-hcccCCCeEEEEec
Q 006816 347 NKAYLLGYHDFSQPDSPWGRNIRYGVREHAMAGISNGVALHGGGLIPFAATFLIFSDYMKNSIRL-SALSHAGVIYILTH 425 (630)
Q Consensus 347 ~~~~~~~~~~f~~~~~~p~R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~~~~~F~~~a~dqi~~-~a~~~~pv~~v~~~ 425 (630)
++. ..| + ++||+||||+|||||+|+++|+|||+.| ++||+++|++|++|+||||++ .|++++||+|++++
T Consensus 387 ~gl-----~~f-~-~~fP~R~fdvGIAEq~~vg~AaGLA~~G--~kPvv~~fs~Fl~RA~DQI~~dval~~lpVv~v~~~ 457 (677)
T PLN02582 387 TGL-----NLF-A-RRFPTRCFDVGIAEQHAVTFAAGLACEG--LKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDR 457 (677)
T ss_pred cch-----HHH-H-HHcCccccccCcCHHHHHHHHHHHHHCC--CeEEEEecHHHHHHHHHHHHHHHHhcCCCEEEEEEC
Confidence 653 357 4 6899999999999999999999999999 999999999999999999866 59999999999988
Q ss_pred CCCCCCCCCCCCCChhhhHHhhcCCCcEEEecCChHHHHHHHHHHHHcCCCcEEEEEcCCCccccc--CCC-cccccccc
Q 006816 426 DSIGLGEDGPTHQPVEQLAGLRAVPRLLAFRPADGNETAGSYRVAIANRDVPSVIALSRQKIAANL--EGT-SADEVERG 502 (630)
Q Consensus 426 ~g~~~g~~G~tHq~~~d~a~l~~iP~l~v~~P~d~~e~~~~l~~a~~~~~~P~~ir~~r~~~~~~~--~~~-~~~~~~~G 502 (630)
+|+ +|+||+|||+++|+++||+||||+|++|+|++|++.+|++|+...++|+|||++|+.. +.. ++. ....+++|
T Consensus 458 aG~-vg~dG~TH~~~~Dia~lr~iPnl~V~~Psd~~E~~~~l~~al~~~~gPv~IR~pr~~~-~~~~~~~~~~~~~~~iG 535 (677)
T PLN02582 458 AGL-VGADGPTHCGAFDVTYMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNG-IGVQLPPNNKGIPIEVG 535 (677)
T ss_pred CCc-ccCCCCcccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCCCCCEEEEEecCCC-CCcccCCcccccccccC
Confidence 877 6789999999999999999999999999999999999999997546999999999864 322 211 12357889
Q ss_pred cEEEecCCCCCCCcEEEEEeCchHHHHHHHHHHHHhcCCceEEEEcccccccCcccHHHHhccCCCCCeeEEEEecCCcc
Q 006816 503 GYIVSDNSSENKPEIILIGTGTELSLCEGTAKTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLPSRVVKRVSVEAGSSV 582 (630)
Q Consensus 503 ~~~~~~~~~~G~~dvtiva~G~~v~~a~~aa~~L~~~gi~~~Vi~~~~i~pld~~~~~~~~~v~~~~~~~~v~vEe~~~~ 582 (630)
++.+++ + | +|+||||+|+|++.|++|++.|+++||+++|||++|++|||++++. ++.+++. ++||+||+...
T Consensus 536 k~~vlr--~-G-~dvtIva~G~~v~~Al~Aa~~L~~~GI~~~VId~~~lkPlD~~~i~---~~~k~~~-~vVtvEe~~~G 607 (677)
T PLN02582 536 KGRILL--E-G-ERVALLGYGTAVQSCLAAASLLERHGLSATVADARFCKPLDRALIR---SLAKSHE-VLITVEEGSIG 607 (677)
T ss_pred ceEEEE--e-C-CCEEEEeecHHHHHHHHHHHHHHhcCCCEEEEEcCcCCCCCHHHHH---HHhhhCC-EEEEECCCCCC
Confidence 887777 4 7 8999999999999999999999999999999999999999998774 5666664 45999999986
Q ss_pred cccc----cc---c-----CcceEEEe-ccCCCCCCHHHHHHHcCCChHHHHHHHHHhhh
Q 006816 583 GWRE----YV---G-----VEGKVIGV-EEFGASGAYLDTFKKYGFTIDNVTKVARSLLS 629 (630)
Q Consensus 583 g~~~----~~---~-----~~~~~~g~-d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l~ 629 (630)
||++ ++ + .+++++|+ |.|+++|++++|++++|||+++|+++|++++.
T Consensus 608 G~Gs~va~~l~~~~~~~~~~~v~~~Gi~d~F~~~G~~~~L~~~~GL~~e~I~~~i~~~l~ 667 (677)
T PLN02582 608 GFGSHVAQFMALDGLLDGKLKWRPLVLPDRYIDHGAPADQLAEAGLTPSHIAATVLNVLG 667 (677)
T ss_pred cHHHHHHHHHHhcCCccCCceeEEecCCCcccCcCCHHHHHHHhCcCHHHHHHHHHHHHh
Confidence 6652 21 1 35678999 99999999999999999999999999998873
No 12
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=2.7e-99 Score=850.71 Aligned_cols=531 Identities=23% Similarity=0.326 Sum_probs=450.4
Q ss_pred hHHHHHhhcCCCCCCCcccHHHHHHHHHHHhhccCCCCCCCCCCCeEEecCcChhHHHHHHHHHcCCCCCCHHHHhhhhh
Q 006816 2 LIVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQYVCLHLAGFQSVQLEDLKRLCK 81 (630)
Q Consensus 2 ~~~~~~~~~~~GH~g~~ls~~~~~~~L~~~~~~~d~~~~~~~~~Dr~v~s~gH~~~~~y~~~~l~G~~~~~~~~l~~~r~ 81 (630)
++++|+.+ ++||+|++||++|++++||+. ||+ +|||||||+||++ |++++++|+ .++|++||+
T Consensus 34 ~~~~~~~~-~~gH~g~~ls~~~i~~~L~~~---~~~------~rDr~ils~GH~~---y~~~~~~g~----~~~l~~~~~ 96 (580)
T PRK05444 34 FLIDVVSK-TGGHLGSNLGVVELTVALHYV---FDT------PKDRIIWDVGHQA---YPHKILTGR----RDRFDTLRQ 96 (580)
T ss_pred HHHHHHHh-cCCCcCCCccHHHHHHHHHHh---cCC------CCccEEEeccHHH---HHHHHHhCc----HHHhcCccc
Confidence 68999986 799999999999999999964 654 8999999999999 999999998 388999999
Q ss_pred cCCCCCCCCCCCCcCcccccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHH
Q 006816 82 MGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAH 161 (630)
Q Consensus 82 ~~s~~~g~p~~~~~~~~~~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~ 161 (630)
.+| ++|||++.++||+++++|++|+++|+|+|+|+|.|+++ + ++++|||++|||+++||++|||+++|++
T Consensus 97 ~~s-~~g~p~~~~~~~~~~~~G~lG~gl~~AvG~A~a~~~~~----~-----~~~~v~~i~GDG~l~eG~~~Eal~~A~~ 166 (580)
T PRK05444 97 KGG-LSGFPKRSESEYDTFGAGHSSTSISAALGMAKARDLKG----G-----EDRKVVAVIGDGALTGGMAFEALNNAGD 166 (580)
T ss_pred CCC-CCCCCCCCCCCCeeECCChHHHHHHHHHHHHHHHHhhC----C-----CCCeEEEEEcccccccCHHHHHHHHHHh
Confidence 999 56999987899999999999999999999999998762 0 5789999999999999999999999999
Q ss_pred cCCCcEEEEEECCCCccccccccc----ChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeecc
Q 006816 162 WKLNKLTLIYDDNHNTIDGPTSLV----LSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMR 237 (630)
Q Consensus 162 ~~L~~li~i~~~N~~~i~~~~~~~----~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k 237 (630)
++ .|+++|+|||+|++++++... ...++.++|++|||+++.++||| |++++.++++++++ .++|++|+++|.|
T Consensus 167 ~~-~nli~IvdnN~~~i~~~~~~~~~~~~~~~~~~~~~a~G~~~~~~vdG~-d~~~l~~al~~a~~-~~~P~lI~~~T~k 243 (580)
T PRK05444 167 LK-SDLIVILNDNEMSISPNVGALSNYLARLRSSTLFEELGFNYIGPIDGH-DLDALIETLKNAKD-LKGPVLLHVVTKK 243 (580)
T ss_pred hC-CCEEEEEECCCCcCCCcchhhhhhhccccHHHHHHHcCCCeeeeeCCC-CHHHHHHHHHHHHh-CCCCEEEEEEecC
Confidence 99 558999999999999887532 23567789999999999533999 99999999999987 6899999999999
Q ss_pred cccCcccCCCCCCChHHHHHHHHhhhhchhHHHHHHHHHHhhhhcCCchhHhHHHHhcCCCCCCccccCCCCCCCCCCch
Q 006816 238 ERVNWVDRDQFHVIPMVYREMQIQTDHGERLEKEWCSKVYNYRSKYPHEGAELDLLLNGGLLPGWENALPKWSTSDPLDA 317 (630)
Q Consensus 238 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 317 (630)
|+ |+++.+... ..||.. .....+. +... .+. .....+
T Consensus 244 g~-G~~~~e~~~--------------------~~~h~~----~~~~~~~---------~~~~------~~~---~~~~~~ 280 (580)
T PRK05444 244 GK-GYAPAEADP--------------------IKYHGV----GKFDPET---------GEQP------KSS---KPGKPS 280 (580)
T ss_pred Cc-CCChhhcCc--------------------cccCCC----CCCCccc---------CCcc------ccC---CCCccc
Confidence 99 985432111 012210 0000000 0000 000 112257
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEecCCCCCcccccccccCcCCCCCCCCCccccccchHHHHHHHHHHHhcCCCCceEeee
Q 006816 318 TRGYSEKCLNQLAKVLPGLIGGSADLASSNKAYLLGYHDFSQPDSPWGRNIRYGVREHAMAGISNGVALHGGGLIPFAAT 397 (630)
Q Consensus 318 ~r~a~~~~L~~l~~~~~~iv~~~aD~~~s~~~~~~~~~~f~~~~~~p~R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~~ 397 (630)
+|++++++|.++++++|+++++++|+.++++. ..| + ++||+||||+|||||+|+|+|+|||+.| ++||+++
T Consensus 281 ~~~~~~~~L~~~~~~~~~vv~~~adl~~~~~~-----~~f-~-~~~p~R~i~~GIaE~~mvg~A~GlA~~G--~~p~~~~ 351 (580)
T PRK05444 281 YTKVFGETLCELAEKDPKIVAITAAMPEGTGL-----VKF-S-KRFPDRYFDVGIAEQHAVTFAAGLATEG--LKPVVAI 351 (580)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEECCcCCCCCH-----HHH-H-HHhhhhccCCChHHHHHHHHHHHHHHCC--CeeEEEe
Confidence 89999999999999999999999998765532 347 4 6899999999999999999999999999 9999999
Q ss_pred hHHHHHhhHHHHHH-hcccCCCeEEEEecCCCCCCCCCCCCCChhhhHHhhcCCCcEEEecCChHHHHHHHHHHHHcCCC
Q 006816 398 FLIFSDYMKNSIRL-SALSHAGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAVPRLLAFRPADGNETAGSYRVAIANRDV 476 (630)
Q Consensus 398 ~~~F~~~a~dqi~~-~a~~~~pv~~v~~~~g~~~g~~G~tHq~~~d~a~l~~iP~l~v~~P~d~~e~~~~l~~a~~~~~~ 476 (630)
|++|++|++||||+ .|++++||+++++|+|+ .|+||+|||++||+++||+|||++|++|+|+.|+++||+++++..++
T Consensus 352 f~~F~~ra~dQi~~~~a~~~~pv~~v~~~~G~-~g~dG~tH~~~edia~lr~iP~l~V~~Psd~~e~~~~l~~a~~~~~~ 430 (580)
T PRK05444 352 YSTFLQRAYDQVIHDVALQNLPVTFAIDRAGL-VGADGPTHQGAFDLSYLRCIPNMVIMAPSDENELRQMLYTALAYDDG 430 (580)
T ss_pred eHHHHHHHHHHHHHHhhhcCCCEEEEEeCCCc-CCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCCCC
Confidence 99999999999998 59999999999999997 57899999999999999999999999999999999999999975579
Q ss_pred cEEEEEcCCCcccccCCCcccccccccEEEecCCCCCCCcEEEEEeCchHHHHHHHHHHHHhcCCceEEEEcccccccCc
Q 006816 477 PSVIALSRQKIAANLEGTSADEVERGGYIVSDNSSENKPEIILIGTGTELSLCEGTAKTLRQEGRRVRVVSLVCWRLFDR 556 (630)
Q Consensus 477 P~~ir~~r~~~~~~~~~~~~~~~~~G~~~~~~~~~~G~~dvtiva~G~~v~~a~~aa~~L~~~gi~~~Vi~~~~i~pld~ 556 (630)
|+|||++|+.. +..+....+.+++|+|.+++ + | +|+||||+|+|+++|++|++.|+ +++|||++|++|||+
T Consensus 431 P~~ir~~r~~~-~~~~~~~~~~~~~Gk~~vl~--~-G-~dvtIia~G~~v~~al~Aa~~L~----~~~VId~~~i~p~D~ 501 (580)
T PRK05444 431 PIAIRYPRGNG-VGVELPELEPLPIGKGEVLR--E-G-EDVAILAFGTMLAEALKAAERLA----SATVVDARFVKPLDE 501 (580)
T ss_pred cEEEEecCCCC-CCCCCCCcccccCCceEEEE--c-C-CCEEEEEccHHHHHHHHHHHHhC----CCEEEEeCcCCccCH
Confidence 99999999987 54432224568899998887 5 7 89999999999999999999995 899999999999999
Q ss_pred ccHHHHhccCCCCCeeEEEEecCCcc-cccc----cc-----cCcceEEEe-ccCCCCCCHHHHHHHcCCChHHHHHHHH
Q 006816 557 QPAEYKEKVLPSRVVKRVSVEAGSSV-GWRE----YV-----GVEGKVIGV-EEFGASGAYLDTFKKYGFTIDNVTKVAR 625 (630)
Q Consensus 557 ~~~~~~~~v~~~~~~~~v~vEe~~~~-g~~~----~~-----~~~~~~~g~-d~f~~~g~~~~l~~~~gl~~~~I~~~i~ 625 (630)
+.+. +++.+++ ++ |++||+... ||++ ++ ..+++++|+ |.|+++|+.++|++++|||+++|+++|+
T Consensus 502 ~~i~--~~~~~~~-~v-v~vEe~~~~gG~g~~va~~l~~~~~~~~v~~ig~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~ 577 (580)
T PRK05444 502 ELLL--ELAAKHD-LV-VTVEEGAIMGGFGSAVLEFLADHGLDVPVLNLGLPDEFIDHGSREELLAELGLDAEGIARRIL 577 (580)
T ss_pred HHHH--HHHhcCC-eE-EEEECCCCCCCHHHHHHHHHHhhcCCCCEEEEecCCcCCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 8876 3455554 55 999999985 6652 22 346789999 8999999999999999999999999999
Q ss_pred Hhh
Q 006816 626 SLL 628 (630)
Q Consensus 626 ~~l 628 (630)
+++
T Consensus 578 ~~~ 580 (580)
T PRK05444 578 ELL 580 (580)
T ss_pred hhC
Confidence 864
No 13
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=1.7e-98 Score=846.43 Aligned_cols=533 Identities=21% Similarity=0.317 Sum_probs=447.0
Q ss_pred hHHHHHhhcCCCCCCCcccHHHHHHHHHHHhhccCCCCCCCCCCCeEEecCcChhHHHHHHHHHcCCCCCCHHHHhhhhh
Q 006816 2 LIVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQYVCLHLAGFQSVQLEDLKRLCK 81 (630)
Q Consensus 2 ~~~~~~~~~~~GH~g~~ls~~~~~~~L~~~~~~~d~~~~~~~~~Dr~v~s~gH~~~~~y~~~~l~G~~~~~~~~l~~~r~ 81 (630)
++++|+.++ +||+|++||++|++++||+. ||. +|||||||+||++ |++++|+|+ .++|++|||
T Consensus 36 ~ii~~~~~~-~GH~g~~ls~vel~~aL~~~---~~~------prDr~i~s~GH~~---Y~~~~l~g~----~~~l~~~r~ 98 (641)
T PRK12571 36 EVISAVSET-GGHLGSSLGVVELTVALHAV---FNT------PKDKLVWDVGHQC---YPHKILTGR----RDRFRTLRQ 98 (641)
T ss_pred HHHHHHHHh-CCCcCCCchHHHHHHHHHHh---cCC------CCCcEEEECchHH---HHHHHHhCC----HHHHhhhhh
Confidence 578999877 79999999999999999954 542 5999999999999 999999998 489999999
Q ss_pred cCCCCCCCCCCCCcCcccccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHH
Q 006816 82 MGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAH 161 (630)
Q Consensus 82 ~~s~~~g~p~~~~~~~~~~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~ 161 (630)
.+| +.|||++.++|+..+..|+-|.+++.|+|+|++.|+.+ ++++|||++|||+++||++||++++|++
T Consensus 99 ~~~-l~g~p~~~e~~~~~~~~g~~~gslg~a~G~A~a~~~~~----------~~~~v~~v~GDG~~~eG~~~Eal~~a~~ 167 (641)
T PRK12571 99 KGG-LSGFTKRSESEYDPFGAAHSSTSISAALGFAKARALGQ----------PDGDVVAVIGDGSLTAGMAYEALNNAGA 167 (641)
T ss_pred CCC-cCCCCCCCcCCCCCcccCCCcChHHHHHHHHHHHHHhC----------CCCeEEEEEeCchhhcchHHHHHHHHHH
Confidence 999 55999988888887888887888999999999998765 6899999999999999999999999999
Q ss_pred cCCCcEEEEEECCCCcccccccc--------cChhcH-----------------------------------HHHHHhCC
Q 006816 162 WKLNKLTLIYDDNHNTIDGPTSL--------VLSEDI-----------------------------------SARFKSLG 198 (630)
Q Consensus 162 ~~L~~li~i~~~N~~~i~~~~~~--------~~~~~~-----------------------------------~~~~~a~G 198 (630)
+++ |+++|+|||++++++++.. .....+ ..+|++||
T Consensus 168 ~~~-~li~I~dnN~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G 246 (641)
T PRK12571 168 ADR-RLIVILNDNEMSIAPPVGALAAYLSTLRSSDPFARLRAIAKGVEERLPGPLRDGARRARELVTGMIGGGTLFEELG 246 (641)
T ss_pred hCC-CEEEEEECCCeeecCCccHHHHHHHHHhcCcchHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhccchhhHHHHcC
Confidence 998 5899999999999998851 111111 47899999
Q ss_pred CeEE-EEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeecccccCcccCCCCCCChHHHHHHHHhhhhchhHHHHHHHHHH
Q 006816 199 WNTI-MVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRERVNWVDRDQFHVIPMVYREMQIQTDHGERLEKEWCSKVY 277 (630)
Q Consensus 199 ~~~~-~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (630)
|+++ .| ||| |+++|.++|+++++..++|++|+++|.||+ |+++.+... ..||..
T Consensus 247 ~~~~~~v-dGh-d~~~l~~al~~ak~~~~~P~~I~~~T~kGk-G~~~~e~~~--------------------~~~Hg~-- 301 (641)
T PRK12571 247 FTYVGPI-DGH-DMEALLSVLRAARARADGPVLVHVVTEKGR-GYAPAEADE--------------------DKYHAV-- 301 (641)
T ss_pred CEEECcc-CCC-CHHHHHHHHHHHHhCCCCCEEEEEEecCcc-CcchhhcCC--------------------CcccCC--
Confidence 9999 56 999 999999999999863478999999999999 996544311 123321
Q ss_pred hhhhcCCchhHhHHHHhcCCCCCCccccCCCCCCCCCCchHHHHHHHHHHHHHHhCCCeEEEecCCCCCcccccccccCc
Q 006816 278 NYRSKYPHEGAELDLLLNGGLLPGWENALPKWSTSDPLDATRGYSEKCLNQLAKVLPGLIGGSADLASSNKAYLLGYHDF 357 (630)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~r~a~~~~L~~l~~~~~~iv~~~aD~~~s~~~~~~~~~~f 357 (630)
...+.+. +. ... ......++|++|+++|.+++++||+|+++++|+.++++. +.|
T Consensus 302 --~~f~~~~---------~~---------~~~-~~~~~~~~~~~f~~~L~~la~~d~~iv~isadl~~~~~~-----~~f 355 (641)
T PRK12571 302 --GKFDVVT---------GL---------QKK-SAPSAPSYTSVFGEELTKEAAEDSDIVAITAAMPLGTGL-----DKL 355 (641)
T ss_pred --CCcCCCC---------Cc---------ccC-CCccchhHHHHHHHHHHHHHhhCCCEEEEeCCccCCCCh-----HHH
Confidence 0001110 00 000 001124688999999999999999999999999776532 457
Q ss_pred CCCCCCCCCccccccchHHHHHHHHHHHhcCCCCceEeeehHHHHHhhHHHHHH-hcccCCCeEEEEecCCCCCCCCCCC
Q 006816 358 SQPDSPWGRNIRYGVREHAMAGISNGVALHGGGLIPFAATFLIFSDYMKNSIRL-SALSHAGVIYILTHDSIGLGEDGPT 436 (630)
Q Consensus 358 ~~~~~~p~R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~~~~~F~~~a~dqi~~-~a~~~~pv~~v~~~~g~~~g~~G~t 436 (630)
+ ++||+||||+|||||+|+|+|+|||+.| ++||+++|++|++|++||||+ +|++++||+++++++|+ +|+||+|
T Consensus 356 -~-~~~p~R~id~GIaE~~mvg~AaGlA~~G--~~P~v~~f~~Fl~ra~dQI~~~~a~~~lpv~~v~~~~G~-~g~dG~T 430 (641)
T PRK12571 356 -Q-KRFPNRVFDVGIAEQHAVTFAAGLAAAG--LKPFCAVYSTFLQRGYDQLLHDVALQNLPVRFVLDRAGL-VGADGAT 430 (641)
T ss_pred -H-HhCCCcccccCccHHHHHHHHHHHHHCC--CEEEEEehHHHHHHHHHHHHHHHhhcCCCeEEEEECCCc-CCCCCcc
Confidence 4 6899999999999999999999999988 999999999999999999977 69999999999988887 5999999
Q ss_pred CCChhhhHHhhcCCCcEEEecCChHHHHHHHHHHHHcCCCcEEEEEcCCCcccccC-CCcccccccccEEEecCCCCCCC
Q 006816 437 HQPVEQLAGLRAVPRLLAFRPADGNETAGSYRVAIANRDVPSVIALSRQKIAANLE-GTSADEVERGGYIVSDNSSENKP 515 (630)
Q Consensus 437 Hq~~~d~a~l~~iP~l~v~~P~d~~e~~~~l~~a~~~~~~P~~ir~~r~~~~~~~~-~~~~~~~~~G~~~~~~~~~~G~~ 515 (630)
||+++|+++||+||||+|++|+|++|++++|++|++..++|+|||++|+.. +..+ +.....+++|++.+++ + | +
T Consensus 431 Hq~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~~P~~ir~~r~~~-~~~~~~~~~~~~~~gk~~vlr--~-G-~ 505 (641)
T PRK12571 431 HAGAFDLAFLTNLPNMTVMAPRDEAELRHMLRTAAAHDDGPIAVRFPRGEG-VGVEIPAEGTILGIGKGRVPR--E-G-P 505 (641)
T ss_pred ccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCCCCcEEEEEecCcC-CccccCCCCccccCceeEEEe--c-C-C
Confidence 999999999999999999999999999999999998447999999999875 4221 1122457788888777 5 7 9
Q ss_pred cEEEEEeCchHHHHHHHHHHHHhcCCceEEEEcccccccCcccHHHHhccCCCCCeeEEEEecCCc-ccccc----cc--
Q 006816 516 EIILIGTGTELSLCEGTAKTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLPSRVVKRVSVEAGSS-VGWRE----YV-- 588 (630)
Q Consensus 516 dvtiva~G~~v~~a~~aa~~L~~~gi~~~Vi~~~~i~pld~~~~~~~~~v~~~~~~~~v~vEe~~~-~g~~~----~~-- 588 (630)
|+||||||+|++.|++|++.|+++||+++|||+++++|||.+++. ++.+++ ++ +++||+.. .||++ ++
T Consensus 506 ditIva~G~~v~~aleAa~~L~~~Gi~v~VId~~~lkPlD~~~i~---sv~k~~-~v-vvveE~~~~gG~g~~v~~~l~~ 580 (641)
T PRK12571 506 DVAILSVGAHLHECLDAADLLEAEGISVTVADPRFVKPLDEALTD---LLVRHH-IV-VIVEEQGAMGGFGAHVLHHLAD 580 (641)
T ss_pred CEEEEEecHHHHHHHHHHHHHHhcCCCEEEEEcCcCCCcCHHHHH---HHhhhC-CE-EEEECCCCCCCHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999997764 677776 55 66666655 55642 11
Q ss_pred ------cCcceEEEe-ccCCCCCCHHHHHHHcCCChHHHHHHHHHhhh
Q 006816 589 ------GVEGKVIGV-EEFGASGAYLDTFKKYGFTIDNVTKVARSLLS 629 (630)
Q Consensus 589 ------~~~~~~~g~-d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l~ 629 (630)
..+++++|+ |.|+++|+.+++++++|+|+++|+++|+++++
T Consensus 581 ~~~~~l~~~v~~ig~~d~f~~~g~~~el~~~~gl~~~~I~~~i~~~l~ 628 (641)
T PRK12571 581 TGLLDGGLKLRTLGLPDRFIDHASREEMYAEAGLTAPDIAAAVTGALA 628 (641)
T ss_pred cCccccCCCeEEEecCCcCCCCCCHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 346789999 89999999999999999999999999999874
No 14
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=1.2e-98 Score=832.64 Aligned_cols=514 Identities=18% Similarity=0.222 Sum_probs=442.3
Q ss_pred HHHHHhhcCCCCCCCcccHHHHHHHHHHHhhccCCCCCCCCCCCeEEecCcChhHHHHHHHHHcCCCCCCHHHHhhhhhc
Q 006816 3 IVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQYVCLHLAGFQSVQLEDLKRLCKM 82 (630)
Q Consensus 3 ~~~~~~~~~~GH~g~~ls~~~~~~~L~~~~~~~d~~~~~~~~~Dr~v~s~gH~~~~~y~~~~l~G~~~~~~~~l~~~r~~ 82 (630)
+++.+...++||+|++||+||+++|||++ ||+ ++|++|||.|||+ |+|++||||. +.+.+ ||.
T Consensus 107 li~~v~s~~GGHl~snLGvVELTvALH~V---Fd~------p~DkiiwDvgHQ~---Y~HKiLTGR~----~~f~~-Rq~ 169 (701)
T PLN02225 107 LHSVLWKKTQKSMNPSFAAIELTLALHYV---FRA------PVDNILWDAVEQT---YAHKVLTRRW----SAIPS-RQK 169 (701)
T ss_pred HHHHhhcccCCCcCCCccHHHHHHHHHHH---hCC------CCCceeecccccc---chhhHhcCCh----hhcCc-ccc
Confidence 45556347899999999999999999999 887 8999999999999 9999999994 66776 999
Q ss_pred CCCCCCCCCCCCcCcccccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHc
Q 006816 83 GSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHW 162 (630)
Q Consensus 83 ~s~~~g~p~~~~~~~~~~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~ 162 (630)
++.+ |+|++.+++++.|.+||.++++++|+|+|.|+++++ .+++||++||||++..||+|||||.|+..
T Consensus 170 ~Gls-Gf~~r~ES~~D~f~~GHssTSiSaalG~a~ardl~g----------~~~~vvaVIGDGaltgGma~EaLN~~g~~ 238 (701)
T PLN02225 170 NGIS-GVTSQLESEYDSFGTGHGCNSISAGLGLAVARDIKG----------KRDRVVAVIDNATITAGQAYEAMSNAGYL 238 (701)
T ss_pred CCcC-CCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcC----------CCCcEEEEEcCcchhhhhHHHHHhhhhcc
Confidence 9998 999999999999999999999999999999998876 67899999999999999999999999998
Q ss_pred CCCcEEEEEECCCCccccc--------cccc--------C------------------h-------hc--------H---
Q 006816 163 KLNKLTLIYDDNHNTIDGP--------TSLV--------L------------------S-------ED--------I--- 190 (630)
Q Consensus 163 ~L~~li~i~~~N~~~i~~~--------~~~~--------~------------------~-------~~--------~--- 190 (630)
+ .|+|+|+|||+++|+.+ +.-. . + .. +
T Consensus 239 ~-~~livILNDN~mSi~~n~~~~~~~~vG~ls~~l~~l~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~ 317 (701)
T PLN02225 239 D-SNMIVILNDSRHSLHPNMEEGSKASISALSSIMSKIQSSKIFRKFRELAKAMTKRIGKGMYEWAAKVDEYARGMVGPT 317 (701)
T ss_pred C-CCEEEEEeCCCCCCCCCCCCccCCccchHHHHHHHHhccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccCCC
Confidence 8 57999999999999998 2200 0 0 00 0
Q ss_pred H-HHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCC--CcEEEEEeecccccCcccCCCCCCChHHHHHHHHhhhhchh
Q 006816 191 S-ARFKSLGWNTIMVENIHDNLSSFKEALMAAANETK--KPTFIRVKKMRERVNWVDRDQFHVIPMVYREMQIQTDHGER 267 (630)
Q Consensus 191 ~-~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~--~P~~i~~~t~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (630)
. .+|+.+|++|+.++||| |+++|.++|+++++ .+ +|++||+.|.||+ . +..
T Consensus 318 ~~~lFe~lG~~Y~GpvDGH-di~~Li~~l~~~k~-~~~~~PvlvHv~T~KGk-d--~~t--------------------- 371 (701)
T PLN02225 318 GSTLFEELGLYYIGPVDGH-NIEDLVCVLREVSS-LDSMGPVLVHVITEENR-D--AET--------------------- 371 (701)
T ss_pred ccCcHHHcCCeEECccCCC-CHHHHHHHHHHHHc-CCCCCCEEEEEEecCCC-C--CCC---------------------
Confidence 1 47899999999999999 99999999999997 55 9999999999987 1 110
Q ss_pred HHHHHHHHHHhhhhcCCchhHhHHHHhcCCCCCCccccCCCCCCCCCCchHHHHHHHHHHHHHHhCCCeEEEecCCCCCc
Q 006816 268 LEKEWCSKVYNYRSKYPHEGAELDLLLNGGLLPGWENALPKWSTSDPLDATRGYSEKCLNQLAKVLPGLIGGSADLASSN 347 (630)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~r~a~~~~L~~l~~~~~~iv~~~aD~~~s~ 347 (630)
|. +. ......+++++|+++|.+++++||+|+++++|+..++
T Consensus 372 ----------------------------g~-~~----------~~~~~~s~~~~f~~aL~~la~~D~~Iv~Itadm~~gt 412 (701)
T PLN02225 372 ----------------------------GK-NI----------MVKDRRTYSDCFVEALVMEAEKDRDIVVVHAGMEMDA 412 (701)
T ss_pred ----------------------------CC-cC----------CCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCccCcc
Confidence 00 00 0001346889999999999999999999999997655
Q ss_pred ccccccccCcCCCCCCCCCccccccchHHHHHHHHHHHhcCCCCceEeeehHHHHHhhHHHHHH-hcccCCCeEEEEecC
Q 006816 348 KAYLLGYHDFSQPDSPWGRNIRYGVREHAMAGISNGVALHGGGLIPFAATFLIFSDYMKNSIRL-SALSHAGVIYILTHD 426 (630)
Q Consensus 348 ~~~~~~~~~f~~~~~~p~R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~~~~~F~~~a~dqi~~-~a~~~~pv~~v~~~~ 426 (630)
+ +..| + ++||+||||+||||||||++|+|||+.| ++||+++|++|++|+||||++ .|++++||+|+++++
T Consensus 413 g-----l~~f-~-~~fPdRffDvGIAEQhaVt~AAGLA~~G--~kPvv~iystFlqRAyDQI~~Dval~~lpV~~vid~a 483 (701)
T PLN02225 413 S-----LITF-Q-ERFPDRFFNVGMAEQHAVTFSAGLSSGG--LKPFCIIPSAFLQRAYDQVVHDVDRQRKAVRFVITSA 483 (701)
T ss_pred c-----HHHH-H-HHccccccccCccHHHHHHHHHHHHHCC--CEEEEEeehhHHHHHHHHHHHHHHhhcCCceEEEECC
Confidence 4 2457 4 6899999999999999999999999999 999999999999999999988 599999999999777
Q ss_pred CCCCCCCCCCCCChhhhHHhhcCCCcEEEecCChHHHHHHHHHHHHcCCCcEEEEEcCCCcccccC--CCcccccccccE
Q 006816 427 SIGLGEDGPTHQPVEQLAGLRAVPRLLAFRPADGNETAGSYRVAIANRDVPSVIALSRQKIAANLE--GTSADEVERGGY 504 (630)
Q Consensus 427 g~~~g~~G~tHq~~~d~a~l~~iP~l~v~~P~d~~e~~~~l~~a~~~~~~P~~ir~~r~~~~~~~~--~~~~~~~~~G~~ 504 (630)
|+ +|+||+|||+++|+++||+||||+|++|+|+.|++.||++|+...++|+|||+||+.. +..+ ......+++|++
T Consensus 484 Gl-vg~DG~TH~g~~Dia~lr~IPnm~V~aPsD~~El~~mL~~A~~~~~gPv~IR~pRg~~-~~~~~~~~~~~~~~iGK~ 561 (701)
T PLN02225 484 GL-VGSDGPVQCGAFDIAFMSSLPNMIAMAPADEDELVNMVATAAYVTDRPVCFRFPRGSI-VNMNYLVPTGLPIEIGRG 561 (701)
T ss_pred cc-CCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhcCCCCEEEEeccccc-CCCCcCCCCCccccCcce
Confidence 65 6789999999999999999999999999999999999999985547999999999875 4332 112256788998
Q ss_pred EEecCCCCCCCcEEEEEeCchHHHHHHHHHHHHhcCCceEEEEcccccccCcccHHHHhccCCCCCeeEEEEecCCcccc
Q 006816 505 IVSDNSSENKPEIILIGTGTELSLCEGTAKTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLPSRVVKRVSVEAGSSVGW 584 (630)
Q Consensus 505 ~~~~~~~~G~~dvtiva~G~~v~~a~~aa~~L~~~gi~~~Vi~~~~i~pld~~~~~~~~~v~~~~~~~~v~vEe~~~~g~ 584 (630)
++++ + | +|++|||+|+|++.|++|++.|+++||+++|||++|++|||++++. +.+.+++ .+ ||+||+...|+
T Consensus 562 ~vlr--e-G-~dvtIia~G~mv~~Al~AA~~L~~~GI~vtVIdlr~ikPLD~e~I~--~~~~k~~-~v-VTvEE~~~GG~ 633 (701)
T PLN02225 562 RVLV--E-G-QDVALLGYGAMVQNCLHAHSLLSKLGLNVTVADARFCKPLDIKLVR--DLCQNHK-FL-ITVEEGCVGGF 633 (701)
T ss_pred EEEE--e-C-CCEEEEeccHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCHHHHH--HHHhhcC-eE-EEEcCCCCCch
Confidence 8777 4 7 9999999999999999999999999999999999999999999886 3444444 45 99999997444
Q ss_pred c----ccc--------cCcceEEEe-ccCCCCCCHHHHHHHcCCChHHHHHHHHHhhh
Q 006816 585 R----EYV--------GVEGKVIGV-EEFGASGAYLDTFKKYGFTIDNVTKVARSLLS 629 (630)
Q Consensus 585 ~----~~~--------~~~~~~~g~-d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l~ 629 (630)
+ +++ ..+++++|+ |.|+++|++++|++++|||+++|+++|++++.
T Consensus 634 Gs~Va~~l~~~~~~~~~~~v~~iGipd~F~~~G~~~~ll~~~GLdae~I~~~i~~~l~ 691 (701)
T PLN02225 634 GSHVAQFIALDGQLDGNIKWRPIVLPDGYIEEASPREQLALAGLTGHHIAATALSLLG 691 (701)
T ss_pred HHHHHHHHHhcCCCcCCCcEEEEecCCcCcCCCCHHHHHHHhCcCHHHHHHHHHHHHh
Confidence 3 221 136788999 99999999999999999999999999998873
No 15
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=100.00 E-value=1.1e-96 Score=832.55 Aligned_cols=608 Identities=20% Similarity=0.192 Sum_probs=481.9
Q ss_pred hHHHHHhhcC------CCCCCCcccHHHHHHHHHHHhhccCCCCCCCCCCCeEEecCcChhHHHHHHHHHcCCCCCCHHH
Q 006816 2 LIVDAVQNAK------AGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQYVCLHLAGFQSVQLED 75 (630)
Q Consensus 2 ~~~~~~~~~~------~GH~g~~ls~~~~~~~L~~~~~~~d~~~~~~~~~Dr~v~s~gH~~~~~y~~~~l~G~~~~~~~~ 75 (630)
++++|+.+++ +||+|+++|+++|+.+||.++||++ +.|.+|| ||+|+||++|++|+++++.|+ ++.|+
T Consensus 85 ~a~~mv~~A~~~~~~~gGH~gs~lS~a~i~~vLy~~~lr~~---~~~~~rD-~VlskGHasp~lYA~l~l~G~--l~~e~ 158 (889)
T TIGR03186 85 NALAMVVRANRAYGELGGHIASYASAADLFEVGFNHFFRAA---GDASGGD-LVYFQPHSAPGVYARAFLEGF--LSDAQ 158 (889)
T ss_pred HHHHHHHhcccCCCCCCCCCcCcHHHHHHHHHHHHHhCCCC---CCCCCCC-EEEECCchHHHHHHHHHHcCC--CCHHH
Confidence 6899999999 6999999999999999999999963 4488888 799999999999999999999 99999
Q ss_pred Hhhhhhc--CCCCCCCCCCCCcC-cccccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhH
Q 006816 76 LKRLCKM--GSRTPGHPENVVTE-GIEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGIS 152 (630)
Q Consensus 76 l~~~r~~--~s~~~g~p~~~~~~-~~~~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~ 152 (630)
|++|||. ++.+++||.+...| +++++||+||+|+++|+|+|++.|++..++... ..+++|||++||||++||.+
T Consensus 159 L~~fRq~~~~~gl~~~phP~~~p~~ve~sTGSLGqGl~~AvG~Ala~kyl~~r~~~~---~~~~rVy~llGDGEl~EG~~ 235 (889)
T TIGR03186 159 LAHYRQEIAGPGLCSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQNRGLAR---TEGRKVWGFFGDGEMDEPES 235 (889)
T ss_pred HHHhcCCCCCCCCCCCCCcccCCCCeEcCCCCchHHHHHHHHHHHHHHHHhhccccC---CCCceEEEEEcchhhccHHH
Confidence 9999999 66677766654456 699999999999999999999999887663222 26799999999999999999
Q ss_pred HHHHHHhHHcCCCcEEEEEECCCCccccccccc--ChhcHHHHHHhCCCeEEEEe-------------------------
Q 006816 153 HEAAALAAHWKLNKLTLIYDDNHNTIDGPTSLV--LSEDISARFKSLGWNTIMVE------------------------- 205 (630)
Q Consensus 153 ~eal~~a~~~~L~~li~i~~~N~~~i~~~~~~~--~~~~~~~~~~a~G~~~~~v~------------------------- 205 (630)
|||+.+|++++|+||++|+|+|.+++++++... ..+++.++|++|||++++|+
T Consensus 236 wEA~~~Aa~~kLdNLi~IvD~N~~qlDG~t~~~~~~~e~l~~kf~a~GW~vi~v~wG~~wd~l~~~d~~~~L~~~~~~~~ 315 (889)
T TIGR03186 236 IGALSLAARERLDNLVFVINCNLQRLDGPVRGNGRIIDELESQFAGAGWNVIKVLWGSDWDALFARDATGALARAFAHTV 315 (889)
T ss_pred HHHHHHHHHhCCCCEEEEEeCCCCccCCccccccccchHHHHHHHhCCCEEEEEeecCchHHhhccccchHHHHHHHhcc
Confidence 999999999999999999999999999999853 35899999999999999985
Q ss_pred -------------------------------------------CCCCCHHHHHHHHHHHHhcCCCcEEEEEeecccccCc
Q 006816 206 -------------------------------------------NIHDNLSSFKEALMAAANETKKPTFIRVKKMRERVNW 242 (630)
Q Consensus 206 -------------------------------------------dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~~~g~ 242 (630)
||| |+.+|++|+++|++..++|++|.++|+||+ |.
T Consensus 316 dg~yq~~~~~~ga~~R~~ff~~~~~~~~lv~~~sD~~i~~l~rgGH-D~~~i~~A~~~A~~~~~~PTvIla~TvkG~-G~ 393 (889)
T TIGR03186 316 DGQFQTFSANDGAYNRARFFGQDPALAALVAHLSDEDIDRLRRGGH-DARKLYAAYDRAVRHEGRPTVILAKTMKGF-GM 393 (889)
T ss_pred cHHHHHHhhcchHHHHHHhcCccHHHHHHhhcccHHhhhhhcCCCC-CHHHHHHHHHHHHhCCCCCEEEEEEeeecC-CC
Confidence 699 999999999998864569999999999998 87
Q ss_pred ccCCC-----CC---CChHHHHHHHHhhhhch-hHHHHHHHHHHhhhhcCCchhHhHHH--HhcCCCCCCccc-----cC
Q 006816 243 VDRDQ-----FH---VIPMVYREMQIQTDHGE-RLEKEWCSKVYNYRSKYPHEGAELDL--LLNGGLLPGWEN-----AL 306 (630)
Q Consensus 243 ~~~~~-----~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~p~~~~~-----~~ 306 (630)
..... |+ +..+.++.|++...--. ...-+|. .+.+..+..|+.....++ .+.+.+|..... ..
T Consensus 394 ~~~g~~~~~~H~~~~l~~e~~~~~r~~~g~~~~de~~~~~-~~~~~~~~s~~~~~l~~~r~~l~g~~p~r~~~~~~~~~~ 472 (889)
T TIGR03186 394 GAIGQGRMTTHQQKKLDVEALLAFRDRFRLPLSDADVEQL-KFYKPDEDSAEMRYLHARRAALGGYLPRRRTAATHALAV 472 (889)
T ss_pred CcccCccccccCcCcCCHHHHHHHHHHcCCCCChHHhhcc-cccCCCCCCHHHHHHHHHHHHcCCCCCCCCCCCccccCC
Confidence 43221 33 45677777876531000 0111231 111111122222111111 233344432111 12
Q ss_pred C------CCCC--CCCCchHHHHHHHHHHHHHHh---CCCeEEEecCCCCCcccc--cccccCcC---------------
Q 006816 307 P------KWST--SDPLDATRGYSEKCLNQLAKV---LPGLIGGSADLASSNKAY--LLGYHDFS--------------- 358 (630)
Q Consensus 307 ~------~~~~--~~~~~~~r~a~~~~L~~l~~~---~~~iv~~~aD~~~s~~~~--~~~~~~f~--------------- 358 (630)
| .+.. ++++++|+.+|+++|..|++. .++||.+++|++.+++.. |+..+.|+
T Consensus 473 p~~~~~~~~~~~~~~~~~sT~~Af~r~l~~L~~~~~~~~riV~i~pD~a~t~gm~~~f~~~gi~~~~gq~y~~~d~~~~~ 552 (889)
T TIGR03186 473 PALPSWGRFALDAEGKEMSTTMAIVRMLGALLKDAELGPRIVPIVADEARTFGMANLFRQVGIYSPLGQRYEPEDLGSML 552 (889)
T ss_pred CCcchhhhhhccCCCCcccHHHHHHHHHHHHHhCccccCCEEEeCCcccccCCchhhhccccccCcccccCCccchHHHH
Confidence 2 2221 347799999999998877764 678999999999888543 33333331
Q ss_pred -CCCCCCCCccccccchHHHHH--HHHHHHhc--CCCCceEeeehHHHH-HhhHHHHHHhcccCCCeEEEEecCCC-CCC
Q 006816 359 -QPDSPWGRNIRYGVREHAMAG--ISNGVALH--GGGLIPFAATFLIFS-DYMKNSIRLSALSHAGVIYILTHDSI-GLG 431 (630)
Q Consensus 359 -~~~~~p~R~~~~gIaE~~~vg--~a~GlA~~--G~~~~pv~~~~~~F~-~~a~dqi~~~a~~~~pv~~v~~~~g~-~~g 431 (630)
.++.+|+|||++||+||+|++ +|+|+|+. |.|++||+.+|++|. +|++||||++|+++++++++++++|. ++|
T Consensus 553 ~y~e~~p~R~ie~GIAEqnmv~~~iAAGlA~a~~G~g~iPf~~tya~F~~~Ra~Dqir~a~~~~a~v~lvG~~aG~tTlg 632 (889)
T TIGR03186 553 YYREDTDGQILEEGISEAGAISSWIAAATSYSVHDLPMLPFYIYYSMFGFQRIGDLIWAAADQRARGFLIGATSGKTTLG 632 (889)
T ss_pred HHhhcCCCcEEEechhhHHHHHHHHHHHHhhhhcCCCceEEEEehHHhHhhhHHHHHHHHhhcCCCcEEEEECCCccCCC
Confidence 126789999999999999999 99998776 322899999999996 79999999999999999999999999 699
Q ss_pred CCCCCCCChhhhHHhhcCCCcEEEecCChHHHHHHHHHHHH------cCCCcEEEEEcCCCcc-cccCCCcccccccc--
Q 006816 432 EDGPTHQPVEQLAGLRAVPRLLAFRPADGNETAGSYRVAIA------NRDVPSVIALSRQKIA-ANLEGTSADEVERG-- 502 (630)
Q Consensus 432 ~~G~tHq~~~d~a~l~~iP~l~v~~P~d~~e~~~~l~~a~~------~~~~P~~ir~~r~~~~-~~~~~~~~~~~~~G-- 502 (630)
.+|+|||++||++++|+||||+||.|||+.|++.+++++++ . ++|+|||+.|.++. |..+......+..|
T Consensus 633 ~eG~tHq~~eDial~r~iPn~tv~~PaDa~E~a~iv~~~~~rm~~~~~-~gp~YlRl~r~~~~~p~~~~~~~~~~~~gi~ 711 (889)
T TIGR03186 633 GEGLQHQDGTSHLAASTVPNCRAWDPAFAYEVAVIVDEGMREMLERQR-DEFYYLTVTNENYAQPSLPEDRLDAVRRGIL 711 (889)
T ss_pred CCcccccchHhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHHhcCC-CceEEEEeCCCCCCCCCcCCCcccchhcchh
Confidence 99999999999999999999999999999999999999777 4 79999999998661 22332210123333
Q ss_pred --cEEEecCCCCCCCcEEEEEeCchHHHHHHHHHHHHhc-CCceEEEEcccccccCcccHHHHhccCCCCCeeEEEEecC
Q 006816 503 --GYIVSDNSSENKPEIILIGTGTELSLCEGTAKTLRQE-GRRVRVVSLVCWRLFDRQPAEYKEKVLPSRVVKRVSVEAG 579 (630)
Q Consensus 503 --~~~~~~~~~~G~~dvtiva~G~~v~~a~~aa~~L~~~-gi~~~Vi~~~~i~pld~~~~~~~~~v~~~~~~~~v~vEe~ 579 (630)
.|++++...+| +||+|+++|.|+++|++|++.|+++ ||+++|||++|+||||++.+. +.+.+ .+ +++|++
T Consensus 712 kg~y~l~~~~~~g-~dV~LlasG~~v~eAL~AAe~L~~~~GI~a~V~sv~SikpLdrd~i~----a~r~~-~l-~t~Eeh 784 (889)
T TIGR03186 712 KGMYPLDPAALAA-ARVQLLGSGAILGEVQAAARLLRDDWGIDAAVWSVTSFTELARDGRA----AERAQ-RL-GDAERP 784 (889)
T ss_pred heeeEeeccCCCC-CCEEEEeccHHHHHHHHHHHHHhhhhCCCeEEEECCCCCHhHHHHHH----HHHhC-Cc-cccccc
Confidence 38887310126 7999999999999999999999987 999999999999999999875 22333 34 889997
Q ss_pred ---Ccccc-cc---------------------cccCcceEEEeccCCCCCCHHHHHHHcCCChHHHHHHHHHhhh
Q 006816 580 ---SSVGW-RE---------------------YVGVEGKVIGVEEFGASGAYLDTFKKYGFTIDNVTKVARSLLS 629 (630)
Q Consensus 580 ---~~~g~-~~---------------------~~~~~~~~~g~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l~ 629 (630)
+..|+ +. +...++.++|+|.|+.+|++++|+++||+|+++|+.+++++|.
T Consensus 785 ~~~~v~ggLg~~~~p~va~~D~~~avae~i~~~~p~~~~~LG~D~FG~Sgtr~~Lr~~fglda~~Iv~aal~~L~ 859 (889)
T TIGR03186 785 PSPHVAQALGATQGPVIAATDYVRAVPELIRAYVPRRYVTLGTDGFGRSDTRAALRAFFEVDRASIVIAALQALA 859 (889)
T ss_pred ccccHhhhhCCCCCCeeeecchHHHHHHHHHhhCCCCEEEeccCCCCCcCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 43332 21 2244678999999999999999999999999999999998874
No 16
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=100.00 E-value=2e-95 Score=826.47 Aligned_cols=610 Identities=20% Similarity=0.209 Sum_probs=484.6
Q ss_pred hHHHHHhhcCC------CCCCCcccHHHHHHHHHHHhhccCCCCCCCCCCCeEEecCcChhHHHHHHHHHcCCCCCCHHH
Q 006816 2 LIVDAVQNAKA------GHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQYVCLHLAGFQSVQLED 75 (630)
Q Consensus 2 ~~~~~~~~~~~------GH~g~~ls~~~~~~~L~~~~~~~d~~~~~~~~~Dr~v~s~gH~~~~~y~~~~l~G~~~~~~~~ 75 (630)
++++||.++++ ||+|+++|+++|+.+||.++||++ |.|.+|| +|+|+||++|++||.+++.|+ ++.++
T Consensus 99 ~a~~mv~~A~~~~~~~GGH~~s~~S~a~i~~vl~~~~~r~~---~~~~~~D-~V~skGHasp~lYA~~~l~G~--l~~e~ 172 (896)
T PRK13012 99 NALAMVVRANRAYGELGGHIASYASAADLFEVGFNHFFRGR---DDAGGGD-LVYFQPHSAPGIYARAFLEGR--LSEEQ 172 (896)
T ss_pred HHHHHHHhcCCCCCCCCCCCcccHHHHHHHHHHHHhhcCCC---CCCCCCC-EEEECcchHHHHHHHHHHcCC--CCHHH
Confidence 57899999998 999999999999999999999997 4788999 599999999999999999999 99999
Q ss_pred Hhhhhhc--CCCCCCCCCCCCcC-cccccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhH
Q 006816 76 LKRLCKM--GSRTPGHPENVVTE-GIEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGIS 152 (630)
Q Consensus 76 l~~~r~~--~s~~~g~p~~~~~~-~~~~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~ 152 (630)
|++|||. ++.+++||++...| +++++||+||+|+++|+|+|++.||+..+.-. +..+++|||++|||+++||.+
T Consensus 173 L~~fR~~~~~~gl~~~P~p~~~p~~~e~~TGSlG~G~~~ai~~A~~~ryl~~~g~~---~~~~~~v~~~lGDGEl~Eg~~ 249 (896)
T PRK13012 173 LDHFRQEIGGPGLSSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQHRGLK---DTSGRKVWGFFGDGEMDEPES 249 (896)
T ss_pred HHHhcCCCCCCCCCCCCCcCCCCCCEecCCCCchHHHHHHHHHHHhcccccccccc---cCCCCeEEEEEchhhhccHHH
Confidence 9999999 45567888866667 69999999999999999999999877543111 126799999999999999999
Q ss_pred HHHHHHhHHcCCCcEEEEEECCCCcccccccccC--hhcHHHHHHhCCCeEEEEe-------------------------
Q 006816 153 HEAAALAAHWKLNKLTLIYDDNHNTIDGPTSLVL--SEDISARFKSLGWNTIMVE------------------------- 205 (630)
Q Consensus 153 ~eal~~a~~~~L~~li~i~~~N~~~i~~~~~~~~--~~~~~~~~~a~G~~~~~v~------------------------- 205 (630)
|||+.+|++++|+||++|+|.|.+++++++.... .+++.++|+++||++++|+
T Consensus 250 ~eA~~~A~~~~LdNLi~ivD~N~~~lDG~v~~~~~~~~~l~~~f~a~GW~Vi~v~wg~~wd~l~~~d~~~~l~~~~~~~~ 329 (896)
T PRK13012 250 IAALSLAAREGLDNLVFVINCNLQRLDGPVRGNGRIIQELEALFRGAGWNVIKVLWGSDWDALFARDTTGALVRRFAETV 329 (896)
T ss_pred HHHHHHHHHhCCCcEEEEEECCCccccCccccccccchHHHHHHHhCCCEEEEEecccchHHHhcCCCccHHHHHHHhCC
Confidence 9999999999999999999999999999998643 4799999999999999986
Q ss_pred C-------------------------------------------CCCCHHHHHHHHHHHHhcCCCcEEEEEeecccccCc
Q 006816 206 N-------------------------------------------IHDNLSSFKEALMAAANETKKPTFIRVKKMRERVNW 242 (630)
Q Consensus 206 d-------------------------------------------G~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~~~g~ 242 (630)
| || |+.+|++|+++|++..++|++|.++|+||+ |.
T Consensus 330 Dg~yq~~~~~~g~~~r~~ff~~~~~~~~lv~~~~d~~i~~l~rgGH-D~~~i~~A~~~a~~~~~~PtvIla~TvkG~-G~ 407 (896)
T PRK13012 330 DGQFQTFKANDGAYNREHFFGQDPELAALVAHLSDEDIDRLKRGGH-DPRKVYAAYAAAVRHKGQPTVILAKTKKGY-GM 407 (896)
T ss_pred cHHHHHHhhcchHHHHHHhccccHHHHHHhhcccHHhhhhhcCCCC-CHHHHHHHHHHHHhCCCCCEEEEEEeeecC-CC
Confidence 8 99 999999999988764568999999999999 97
Q ss_pred ccC-CC----C---CCChHHHHHHHHhhhhchhHHHHHHH-HHHhhhhcCCchhHhHHH--HhcCCCCCCccc----cCC
Q 006816 243 VDR-DQ----F---HVIPMVYREMQIQTDHGERLEKEWCS-KVYNYRSKYPHEGAELDL--LLNGGLLPGWEN----ALP 307 (630)
Q Consensus 243 ~~~-~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~p~~~~~----~~~ 307 (630)
+.. ++ | ....+.++.|+....- ....++... .+....+..++.....++ .+.+..|..... ..|
T Consensus 408 ~~~~e~~~~~H~~~~l~~e~~~~~r~~~g~-p~~d~~~~~~pf~~p~~~~~~~~~l~~r~~~l~g~~P~r~~~~~~l~~p 486 (896)
T PRK13012 408 GEAGEGRMTTHQQKKLDVEALKAFRDRFRL-PLSDEQLEQLPFYKPAEDSPEMRYLHARRAALGGYLPRRRTAAPPLPVP 486 (896)
T ss_pred CcccCCCcccccCCCCCHHHHHHHHHHcCC-CCChhhhccCCCcCCccccHHHHHHHHHHHHhcCcCCcccccccccCCC
Confidence 522 21 3 2456777777765310 001110000 000011111111110000 122222221100 011
Q ss_pred ---CCC-----CCCCCchHHHHHHHHHHHHHHh---CCCeEEEecCCCCCcccc--ccc------------------ccC
Q 006816 308 ---KWS-----TSDPLDATRGYSEKCLNQLAKV---LPGLIGGSADLASSNKAY--LLG------------------YHD 356 (630)
Q Consensus 308 ---~~~-----~~~~~~~~r~a~~~~L~~l~~~---~~~iv~~~aD~~~s~~~~--~~~------------------~~~ 356 (630)
.|. ..+++++||.+|+++|.+|++. .++||.+++|++.+++.. |.. +..
T Consensus 487 ~~~~~~~~~~~~~~~~isTr~Afgr~L~~L~k~~~~~~~iV~i~aDla~t~gm~~~f~~~~i~~~~gq~y~~~d~~~~~~ 566 (896)
T PRK13012 487 PLSAFAQFALGAGGKEMSTTMAFVRMLGNLLKDKALGPRIVPIVADEARTFGMANLFRQVGIYSPLGQLYEPEDAGSLLY 566 (896)
T ss_pred chhhHHHhhcccCCCcchHHHHHHHHHHHHHhccccCCCEEEeccccccccCcccccccccccccccccccccchhHHhh
Confidence 121 1346789999999999999987 999999999999777542 111 112
Q ss_pred cCCCCCCCCCccccccchHHHHH--HHHHHH--hcCCCCceEeeehHHH-HHhhHHHHHHh-cccCCCeEEEEecCCCCC
Q 006816 357 FSQPDSPWGRNIRYGVREHAMAG--ISNGVA--LHGGGLIPFAATFLIF-SDYMKNSIRLS-ALSHAGVIYILTHDSIGL 430 (630)
Q Consensus 357 f~~~~~~p~R~~~~gIaE~~~vg--~a~GlA--~~G~~~~pv~~~~~~F-~~~a~dqi~~~-a~~~~pv~~v~~~~g~~~ 430 (630)
| ++++|+|||++||+||+|++ +|+|+| ++|.|++||+.+|++| .+|++||||++ +++..+|++++|++|.++
T Consensus 567 y--ke~~pgR~ie~GIaEqnm~~~~~AAG~a~a~~G~g~iPf~~tfs~F~~~R~~Dqir~a~~~~~~~vlig~T~gg~tl 644 (896)
T PRK13012 567 Y--REAKDGQILEEGITEAGAISSWIAAATSYSVHGLPMLPFYIYYSMFGFQRVGDLIWAAADQRARGFLLGATAGRTTL 644 (896)
T ss_pred h--hhCCCCcEEecchhhhhhhHHHHHHHhhHHhcCCCcEEEEEehHHHHHHHHHHHHHHHHhcccCCeEEEEeCccccc
Confidence 3 36889999999999999988 777775 4553389999999999 57999999997 667777999999999999
Q ss_pred CCCCCCCCChhhhHHhhcCCCcEEEecCChHHHHHHHHHHHHc-----CCCcEEEEEcCCCccc--ccCCCccccccccc
Q 006816 431 GEDGPTHQPVEQLAGLRAVPRLLAFRPADGNETAGSYRVAIAN-----RDVPSVIALSRQKIAA--NLEGTSADEVERGG 503 (630)
Q Consensus 431 g~~G~tHq~~~d~a~l~~iP~l~v~~P~d~~e~~~~l~~a~~~-----~~~P~~ir~~r~~~~~--~~~~~~~~~~~~G~ 503 (630)
|++|+|||+++|++++|+||||+||.|+|+.|++.+++.+++. .+.|+|||+.|+++ + .+++.....+..|+
T Consensus 645 g~dG~THQ~~eslal~RaIPN~~V~~PADa~E~a~iv~~al~~m~~~~~~~p~YIrL~r~~~-~~p~~~~~~~~~i~kG~ 723 (896)
T PRK13012 645 GGEGLQHQDGHSHLLASTIPNCRAYDPAFAYELAVIVDDGMRRMLEEQEDVFYYLTVMNENY-AQPALPEGAEEGILKGM 723 (896)
T ss_pred CCCCCCCcchHhHHHHHhCCCCEEEeCCCHHHHHHHHHHHHHHHHhccCCCeEEEEecCCCC-CCCCCCccchhccccCc
Confidence 9999999999999999999999999999999999999998842 26899999999887 4 34433235678899
Q ss_pred EEEecCCCCCCCcEEEEEeCchHHHHHHHHHHHHhc-CCceEEEEcccccccCcccH----------------HHHhccC
Q 006816 504 YIVSDNSSENKPEIILIGTGTELSLCEGTAKTLRQE-GRRVRVVSLVCWRLFDRQPA----------------EYKEKVL 566 (630)
Q Consensus 504 ~~~~~~~~~G~~dvtiva~G~~v~~a~~aa~~L~~~-gi~~~Vi~~~~i~pld~~~~----------------~~~~~v~ 566 (630)
|++.+. .+| +|++||++|++|++|++|++.|+++ ||+++|||++|++|||++.+ .|+.+++
T Consensus 724 y~l~~~-~~g-~dv~LiasGs~v~eAl~AAe~L~~e~GI~a~V~sv~S~kpLd~d~i~~E~hn~~gglg~~~~sy~~~~l 801 (896)
T PRK13012 724 YRLAAA-AEA-PRVQLLGSGAILREVLAAARLLADDWGVDADVWSVTSFTELRRDGLAAERANLLGPAEEARVPYVTQCL 801 (896)
T ss_pred EEEecc-CCC-CCEEEEEecHHHHHHHHHHHHHHhhhCCCeEEEECCCCCHhHHHHHHHHHHhhcCCCccccccHHHHhh
Confidence 988652 225 6999999999999999999999998 99999999999999999966 4555555
Q ss_pred CC-CCeeEEEEecCCc---ccccccccCcceEEEeccCCCCCCHHHHHHHcCCChHHHHHHHHHhhh
Q 006816 567 PS-RVVKRVSVEAGSS---VGWREYVGVEGKVIGVEEFGASGAYLDTFKKYGFTIDNVTKVARSLLS 629 (630)
Q Consensus 567 ~~-~~~~~v~vEe~~~---~g~~~~~~~~~~~~g~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l~ 629 (630)
.. ..++ |+++++.. ..|.++...++.++|+|.|+.||++++|+++||+|+++|+++++++|.
T Consensus 802 ~~~~~p~-Va~~D~~~aVae~l~~~~~~~~~~LGvD~FG~Sg~~~~L~~~fGlda~~Iv~aal~~La 867 (896)
T PRK13012 802 AGTRGPV-VAATDYVRAVPEQIRAFVPARYVTLGTDGFGRSDTRAALRRFFEVDRHSIVLAALKALA 867 (896)
T ss_pred cccCCCe-EEecchHHHHHHHHHHhCCCCeEEEeeCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 54 3455 88888633 345455555778999999999999999999999999999999998875
No 17
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=2.2e-96 Score=815.29 Aligned_cols=489 Identities=20% Similarity=0.304 Sum_probs=411.6
Q ss_pred HHHHHhhcCCCCCCCcccHHHHHHHHHHHhhccCCCCCCCCCCCeEEecCcChhHHHHHHHHHcCCCCCCHHHHhhhhhc
Q 006816 3 IVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQYVCLHLAGFQSVQLEDLKRLCKM 82 (630)
Q Consensus 3 ~~~~~~~~~~GH~g~~ls~~~~~~~L~~~~~~~d~~~~~~~~~Dr~v~s~gH~~~~~y~~~~l~G~~~~~~~~l~~~r~~ 82 (630)
+++++.+. +||+|++||++|++++||++ ||. +|||||||+||++ |+++.++|+. ++|.+|||.
T Consensus 95 ii~~~~~~-~GHlgssLs~vEl~~aL~~v---f~~------p~DriI~s~GHqa---ya~~~ltgr~----~~l~t~r~~ 157 (641)
T PLN02234 95 VIFNVSKT-GGHLGSNLGVVELTVALHYI---FNT------PHDKILWDVGHQS---YPHKILTGRR----GKMKTIRQT 157 (641)
T ss_pred HHHHHhhc-CCCccccchHHHHHHHHHHh---cCC------CCCeEEEecchhH---HHHHHHHhhh----hhhcccccC
Confidence 67888866 99999999999999999975 442 4899999999999 9999999993 579999999
Q ss_pred CCCCCCCCCCCCcCcccccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHc
Q 006816 83 GSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHW 162 (630)
Q Consensus 83 ~s~~~g~p~~~~~~~~~~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~ 162 (630)
+| +.|||++.++||+++++|++|++|++|+|+|+|.|+++ .+++|||++|||+++||++|||++.|++.
T Consensus 158 gg-l~G~p~~~es~~d~~~tGslg~glS~a~GmA~a~~l~g----------~~~~v~~viGDGel~eG~~wEAl~~a~~~ 226 (641)
T PLN02234 158 NG-LSGYTKRRESEHDSFGTGHSSTTLSAGLGMAVGRDLKG----------MNNSVVSVIGDGAMTAGQAYEAMNNAGYL 226 (641)
T ss_pred CC-cCCCCCCCCCCCcEECCCchHHHHHHHHHHHHHHHhCC----------CCCeEEEEEccchhhhHHHHHHHHHHhhh
Confidence 99 67999988899999999999999999999999998876 68899999999999999999999999966
Q ss_pred CCCcEEEEEECCCCc------ccccccccCh----------------hcHHHHHHhCCCeEE-EEeCCCCCHHHHHHHHH
Q 006816 163 KLNKLTLIYDDNHNT------IDGPTSLVLS----------------EDISARFKSLGWNTI-MVENIHDNLSSFKEALM 219 (630)
Q Consensus 163 ~L~~li~i~~~N~~~------i~~~~~~~~~----------------~~~~~~~~a~G~~~~-~v~dG~~d~~~l~~al~ 219 (630)
+ +|+++|+|||+++ +++++..... +++..+|++|||+++ .| ||| |+++|.++|+
T Consensus 227 ~-~nlivIlddN~~~~~~~~q~~g~~~~v~~l~~~l~~l~~~~~~~~~~~~~~fe~fG~~~~g~v-DGH-d~~~l~~al~ 303 (641)
T PLN02234 227 H-SNMIVILNDNKQVSLPTANLDGPTQPVGALSCALSRLQSNCGMIRETSSTLFEELGFHYVGPV-DGH-NIDDLVSILE 303 (641)
T ss_pred C-CCEEEEEECCCCCcccccccCCCCCCcccHHHHHHHhhcccccccCCHHHHHHHcCCEEEeeE-CCC-CHHHHHHHHH
Confidence 6 8999999999994 5555542211 367889999999999 66 999 9999999999
Q ss_pred HHHhcC-CCcEEEEEeecccccCcccCCCCCCChHHHHHHHHhhhhchhHHHHHHHHHHhhhhcCCchhHhHHHHhcCCC
Q 006816 220 AAANET-KKPTFIRVKKMRERVNWVDRDQFHVIPMVYREMQIQTDHGERLEKEWCSKVYNYRSKYPHEGAELDLLLNGGL 298 (630)
Q Consensus 220 ~a~~~~-~~P~~i~~~t~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (630)
+++... ++|++|+++|.||+ |+++.+... ..||.. ...+++...
T Consensus 304 ~~k~~~~~~P~vI~~~T~KGk-Gv~~~E~~~--------------------~~~H~~----~~~~~~~g~---------- 348 (641)
T PLN02234 304 TLKSTKTIGPVLIHVVTEKGR-GYPYAERAD--------------------DKYHGV----LKFDPETGK---------- 348 (641)
T ss_pred HHHhcCCCCCEEEEEEEecCC-CcchhhcCC--------------------cccCCC----CCCCccccc----------
Confidence 987622 48999999999999 997654311 123311 111111110
Q ss_pred CCCccccCCCCCCCCCCchHHHHHHHHHHHHHHhCCCeEEEecCCCCCcccccccccCcCCCCCCCCCccccccchHHHH
Q 006816 299 LPGWENALPKWSTSDPLDATRGYSEKCLNQLAKVLPGLIGGSADLASSNKAYLLGYHDFSQPDSPWGRNIRYGVREHAMA 378 (630)
Q Consensus 299 p~~~~~~~~~~~~~~~~~~~r~a~~~~L~~l~~~~~~iv~~~aD~~~s~~~~~~~~~~f~~~~~~p~R~~~~gIaE~~~v 378 (630)
+ . +......+++++|+++|.+++++||+|+++++|++++++ +..| + ++||+||||+|||||+|+
T Consensus 349 ~------~---~~~~~~~sy~~af~~aL~e~a~~D~~Iv~l~adm~ggt~-----~~~f-~-~~fPdR~fdvGIAEq~~V 412 (641)
T PLN02234 349 Q------F---KNISKTQSYTSCFVEALIAEAEADKDIVAIHAAMGGGTM-----LNLF-E-SRFPTRCFDVGIAEQHAV 412 (641)
T ss_pred c------c---cCCCCCCCHHHHHHHHHHHHHHHCcCEEEEECCCCCCcc-----hHHH-H-HHccccccCCCcCHHHHH
Confidence 0 0 000123567899999999999999999999999976553 2457 3 689999999999999999
Q ss_pred HHHHHHHhcCCCCceEeeehHHHHHhhHHHHHH-hcccCCCeEEEEecCCCCCCCCCCCCCChhhhHHhhcCCCcEEEec
Q 006816 379 GISNGVALHGGGLIPFAATFLIFSDYMKNSIRL-SALSHAGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAVPRLLAFRP 457 (630)
Q Consensus 379 g~a~GlA~~G~~~~pv~~~~~~F~~~a~dqi~~-~a~~~~pv~~v~~~~g~~~g~~G~tHq~~~d~a~l~~iP~l~v~~P 457 (630)
|+|+|||+.| ++||+++|++|++|+||||++ +|++++||+|+++++|+ +|.||+|||+++|++++|+||||+|++|
T Consensus 413 g~AaGLA~~G--~rPvv~~fs~Fl~RA~DQI~~dva~~~lpV~~v~~~aG~-~g~dG~TH~~~~Dia~lr~iPnl~V~~P 489 (641)
T PLN02234 413 TFAAGLACEG--LKPFCTIYSSFMQRAYDQVVHDVDLQKLPVRFAIDRAGL-MGADGPTHCGAFDVTFMACLPNMIVMAP 489 (641)
T ss_pred HHHHHHHHCC--CeEEEEehHHHHHHHHHHHHHHHhhcCCCEEEEEeCCcc-CCCCCccccccHHHHHHhcCCCCEEEee
Confidence 9999999999 999999999999999999987 59999999999977776 5889999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCcEEEEEcCCCcccccC--CC-cccccccccEEEecCCCCCCCcEEEEEeCchHHHHHHHHH
Q 006816 458 ADGNETAGSYRVAIANRDVPSVIALSRQKIAANLE--GT-SADEVERGGYIVSDNSSENKPEIILIGTGTELSLCEGTAK 534 (630)
Q Consensus 458 ~d~~e~~~~l~~a~~~~~~P~~ir~~r~~~~~~~~--~~-~~~~~~~G~~~~~~~~~~G~~dvtiva~G~~v~~a~~aa~ 534 (630)
+|+.|++.||++++...++|++||++|+.. +... .. ....+++|++++++ + | +|+|||+||+|++.|++|++
T Consensus 490 sd~~E~~~~l~~a~~~~~~Pv~ir~~R~~~-~~~~~~~~~~~~~~~iGk~~vlr--e-G-~dvtIva~G~~v~~Al~AA~ 564 (641)
T PLN02234 490 SDEAELFNMVATAAAIDDRPSCFRYHRGNG-IGVSLPPGNKGVPLQIGRGRILR--D-G-ERVALLGYGSAVQRCLEAAS 564 (641)
T ss_pred CCHHHHHHHHHHHHhCCCCCEEEEeecccc-cccccCCCCccccccCceEEEEE--e-C-CCEEEEEecHHHHHHHHHHH
Confidence 999999999999887646999999999875 3322 11 12357889988887 5 7 89999999999999999999
Q ss_pred HHHhcCCceEEEEcccccccCcccHHHHhccCCCCCeeEEEEecCCccccc
Q 006816 535 TLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLPSRVVKRVSVEAGSSVGWR 585 (630)
Q Consensus 535 ~L~~~gi~~~Vi~~~~i~pld~~~~~~~~~v~~~~~~~~v~vEe~~~~g~~ 585 (630)
.|+++||+++|||++|++|||.+.+. ++.+++. ++||+||+...|++
T Consensus 565 ~L~~~GI~v~VId~rsikPlD~~~i~---sl~k~~~-~vVt~Ee~~~GG~G 611 (641)
T PLN02234 565 MLSERGLKITVADARFCKPLDVALIR---SLAKSHE-VLITVEEGSIGGFG 611 (641)
T ss_pred HHHhcCCCEEEEecCCcCCCCHHHHH---HHHHhCC-EEEEECCCCCCcHH
Confidence 99999999999999999999998764 6677664 45999999985554
No 18
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=4e-95 Score=812.75 Aligned_cols=530 Identities=19% Similarity=0.256 Sum_probs=443.8
Q ss_pred HHHHHhhcCCCCCCCcccHHHHHHHHHHHhhccCCCCCCCCCCCeEEecCcChhHHHHHHHHHcCCCCCCHHHHhhhhhc
Q 006816 3 IVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQYVCLHLAGFQSVQLEDLKRLCKM 82 (630)
Q Consensus 3 ~~~~~~~~~~GH~g~~ls~~~~~~~L~~~~~~~d~~~~~~~~~Dr~v~s~gH~~~~~y~~~~l~G~~~~~~~~l~~~r~~ 82 (630)
+++.+ .+++||++++||++|++++|++. ||+ ++|+||||+||++ |+++.++|++ ..+...+++
T Consensus 31 ~~~~~-~~~~Gh~~~~lg~vel~~al~~~---f~~------~~D~ii~d~ghr~---~~~~l~~G~~----~~~~~~~~~ 93 (581)
T PRK12315 31 LLEKD-SAHGGHVGPNLGVVELTIALHYV---FNS------PKDKIVWDVSHQS---YPHKMLTGRK----EAFLDPDHY 93 (581)
T ss_pred HHHHH-HhcCCCcCcchhHHHHHHHHHhh---cCC------CCCcEEEecCCch---HHHHHHcCCc----cchhhHHHc
Confidence 45566 47799999999999999999877 776 6999999999999 9999999984 234445677
Q ss_pred CCCCCCCCCCCCcCcccccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHc
Q 006816 83 GSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHW 162 (630)
Q Consensus 83 ~s~~~g~p~~~~~~~~~~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~ 162 (630)
++.+ |++++.++++..+.+|+.|+++|+|+|+|+|.|+++ .+++|||++|||+++||++|||||+|+.+
T Consensus 94 g~~~-G~~~~~~s~~~~~~~g~~~~~ls~A~G~A~A~k~~~----------~~~~vv~~iGDG~~~eG~~~EAln~A~~~ 162 (581)
T PRK12315 94 DDVT-GYTNPEESEHDFFTVGHTSTSIALATGLAKARDLKG----------EKGNIIAVIGDGSLSGGLALEGLNNAAEL 162 (581)
T ss_pred CCCC-CCCCCCCCCCCCcCCCcHHHHHHHHHHHHHHHHhcC----------CCCeEEEEECchhhhcchHHHHHHHHHhh
Confidence 7666 999876677777899999999999999999998876 67899999999999999999999999999
Q ss_pred CCCcEEEEEECCCCccccccccc----------ChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEE
Q 006816 163 KLNKLTLIYDDNHNTIDGPTSLV----------LSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIR 232 (630)
Q Consensus 163 ~L~~li~i~~~N~~~i~~~~~~~----------~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~ 232 (630)
++| +++|+|||+|++++++... ...++..++++|||+++.|+||| |++++.++++++++ .++|++||
T Consensus 163 k~~-li~Ii~dN~~si~~~~~~~~~~l~~~~~~~~~~~~~~~~a~G~~~~~v~DG~-D~~~l~~a~~~a~~-~~gP~~i~ 239 (581)
T PRK12315 163 KSN-LIIIVNDNQMSIAENHGGLYKNLKELRDTNGQSENNLFKAMGLDYRYVEDGN-DIESLIEAFKEVKD-IDHPIVLH 239 (581)
T ss_pred CCC-EEEEEECCCCcCCCCCchhhhhhhhhhhcccccHHHHHHhcCCeEEEeeCCC-CHHHHHHHHHHHHh-CCCCEEEE
Confidence 965 9999999999999887421 23456789999999999988999 99999999999997 78999999
Q ss_pred EeecccccCcccCCCCCCChHHHHHHHHhhhhchhHHHHHHHHHHhhhhcCCchhHhHHHHhcCCCCCCccccCCCCCCC
Q 006816 233 VKKMRERVNWVDRDQFHVIPMVYREMQIQTDHGERLEKEWCSKVYNYRSKYPHEGAELDLLLNGGLLPGWENALPKWSTS 312 (630)
Q Consensus 233 ~~t~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 312 (630)
++|+||+ |+++.+.. ...||.. .....+. +. ..+ .
T Consensus 240 ~~T~kG~-G~~~~~~~--------------------~~~~h~~----~~f~~~~---------~~-------~~~----~ 274 (581)
T PRK12315 240 IHTLKGK-GYQPAEEN--------------------KEAFHWH----MPFDLET---------GQ-------SKV----P 274 (581)
T ss_pred EEeecCC-CCChhhcC--------------------HHhcCCC----CCCCccc---------Cc-------ccC----C
Confidence 9999999 98643211 1233321 0000000 00 000 0
Q ss_pred CCCchHHHHHHHHHHHHHHhCCCeEEEecCCCCCcccccccccCcCCCCCCCCCccccccchHHHHHHHHHHHhcCCCCc
Q 006816 313 DPLDATRGYSEKCLNQLAKVLPGLIGGSADLASSNKAYLLGYHDFSQPDSPWGRNIRYGVREHAMAGISNGVALHGGGLI 392 (630)
Q Consensus 313 ~~~~~~r~a~~~~L~~l~~~~~~iv~~~aD~~~s~~~~~~~~~~f~~~~~~p~R~~~~gIaE~~~vg~a~GlA~~G~~~~ 392 (630)
..+.+++++++++|.+++++||+++++++|+.++++. +.| + ++||+||||+|||||+|+|+|+|||+.| ++
T Consensus 275 ~~~~~~~~~~~~~l~~~~~~d~~i~~i~~~~~~~~~~-----~~f-~-~~fP~R~id~GIaEq~~v~~AaGlA~~G--~~ 345 (581)
T PRK12315 275 ASGESYSSVTLDYLLKKIKEGKPVVAINAAIPGVFGL-----KEF-R-KKYPDQYVDVGIAEQESVAFASGIAANG--AR 345 (581)
T ss_pred CCCcCHHHHHHHHHHHHhccCCCEEEEeCccccccCc-----HHH-H-HhccccccCCCchHHHHHHHHHHHHHCc--Ce
Confidence 0134688999999999999999999999999776543 457 4 6899999999999999999999999999 99
Q ss_pred eEeeehHHHHHhhHHHHHH-hcccCCCeEEEEecCCCCCCCCCCCCCChhhhHHhhcCCCcEEEecCChHHHHHHHHHHH
Q 006816 393 PFAATFLIFSDYMKNSIRL-SALSHAGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAVPRLLAFRPADGNETAGSYRVAI 471 (630)
Q Consensus 393 pv~~~~~~F~~~a~dqi~~-~a~~~~pv~~v~~~~g~~~g~~G~tHq~~~d~a~l~~iP~l~v~~P~d~~e~~~~l~~a~ 471 (630)
||+.+|++|++|+||||++ .|++++||+|+++++|++ + ||+|||++||+++||+||||+|++|+|+.|++.+|++|+
T Consensus 346 Pvv~~fs~Fl~ra~dQi~~d~a~~~lpv~~~~~~~g~~-~-dG~TH~~~~Dia~lr~iPnl~V~~P~d~~e~~~~l~~a~ 423 (581)
T PRK12315 346 PVIFVNSTFLQRAYDQLSHDLAINNNPAVMIVFGGSIS-G-NDVTHLGIFDIPMISNIPNLVYLAPTTKEELIAMLEWAL 423 (581)
T ss_pred EEEEeeHHHHHHHHHHHHHHHHhcCCCEEEEEECCccc-C-CCccccccHHHHHHhcCCCCEEEecCCHHHHHHHHHHHH
Confidence 9999999999999999988 499999999999877775 4 999999999999999999999999999999999999999
Q ss_pred HcCCCcEEEEEcCCCcccccCCCcccccccccEEEecCCCCCCCcEEEEEeCchHHHHHHHHHHHHhc-CCceEEEEccc
Q 006816 472 ANRDVPSVIALSRQKIAANLEGTSADEVERGGYIVSDNSSENKPEIILIGTGTELSLCEGTAKTLRQE-GRRVRVVSLVC 550 (630)
Q Consensus 472 ~~~~~P~~ir~~r~~~~~~~~~~~~~~~~~G~~~~~~~~~~G~~dvtiva~G~~v~~a~~aa~~L~~~-gi~~~Vi~~~~ 550 (630)
+..++|+|||++|+.+ +..+... ..+..+++.+++ + | +|+||||+|+|+++|++|++.|+++ ||+++|||++|
T Consensus 424 ~~~~gP~~ir~~r~~~-~~~~~~~-~~~~~~k~~v~~--~-g-~dvtiia~G~~v~~Al~Aa~~L~~~~gi~~~Vid~~~ 497 (581)
T PRK12315 424 TQHEHPVAIRVPEHGV-ESGPTVD-TDYSTLKYEVTK--A-G-EKVAILALGDFYELGEKVAKKLKEELGIDATLINPKF 497 (581)
T ss_pred hCCCCcEEEEEcCCcc-CCCCCCc-cCcccceEEEEe--c-C-CCEEEEEEchHHHHHHHHHHHHhhhcCCCEEEEecCc
Confidence 8547999999999987 5443221 234456888877 5 7 8999999999999999999999988 99999999999
Q ss_pred ccccCcccHHHHhccCCCCCeeEEEEecCCccc-cc----ccc---cCcceEEEe-ccCCCCCCHHHHHHHcCCChHHHH
Q 006816 551 WRLFDRQPAEYKEKVLPSRVVKRVSVEAGSSVG-WR----EYV---GVEGKVIGV-EEFGASGAYLDTFKKYGFTIDNVT 621 (630)
Q Consensus 551 i~pld~~~~~~~~~v~~~~~~~~v~vEe~~~~g-~~----~~~---~~~~~~~g~-d~f~~~g~~~~l~~~~gl~~~~I~ 621 (630)
++|||++++. ++.++... +|++||+...| |+ +++ ..+++++|+ |.|+++|+.++|++++|||+++|+
T Consensus 498 ikPlD~~~i~---~~~~~~~~-vvtvEe~~~~GG~gs~v~~~l~~~~~~~~~~gi~d~f~~~g~~~~l~~~~Gl~~~~I~ 573 (581)
T PRK12315 498 ITGLDEELLE---KLKEDHEL-VVTLEDGILDGGFGEKIARYYGNSDMKVLNYGAKKEFNDRVPVEELYKRNHLTPEQIV 573 (581)
T ss_pred CCCCCHHHHH---HHHhhCCE-EEEEcCCCcCCCHHHHHHHHHHcCCCeEEEecCCCCCCCCCCHHHHHHHHCcCHHHHH
Confidence 9999999865 45555544 49999998866 53 233 225678999 889999999999999999999999
Q ss_pred HHHHHhhh
Q 006816 622 KVARSLLS 629 (630)
Q Consensus 622 ~~i~~~l~ 629 (630)
++|++++.
T Consensus 574 ~~i~~~l~ 581 (581)
T PRK12315 574 EDILSVLK 581 (581)
T ss_pred HHHHHHhC
Confidence 99998863
No 19
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=100.00 E-value=2e-91 Score=790.15 Aligned_cols=612 Identities=19% Similarity=0.192 Sum_probs=472.7
Q ss_pred hHHHHHhhcCC------CCCCCcccHHHHHHHHHHHhhccCCCCCCCCCCCeEEecCcChhHHHHHHHHHcCCCCCCHHH
Q 006816 2 LIVDAVQNAKA------GHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQYVCLHLAGFQSVQLED 75 (630)
Q Consensus 2 ~~~~~~~~~~~------GH~g~~ls~~~~~~~L~~~~~~~d~~~~~~~~~Dr~v~s~gH~~~~~y~~~~l~G~~~~~~~~ 75 (630)
++++||.++++ ||+|+++|+++|+.+||.++|+. |++| .+|| ||+|+||++|++||.+++.|+ ++.++
T Consensus 91 ~a~~mv~~An~~~~~~GGH~~s~~S~a~i~~vl~~~~~r~-~~~~--~~~D-~V~skGHasp~lYA~~~l~G~--l~~e~ 164 (891)
T PRK09405 91 NAAAMVLRANKKDLGLGGHISSFASSATLYEVGFNHFFRA-PNEP--HGGD-LVFFQGHASPGIYARAFLEGR--LTEEQ 164 (891)
T ss_pred HHHHHHHhccCCCCCCCCcccChHHHHHHHHHHHHhhCCC-CCCC--CCCC-EEEECchHHHHHHHHHHHcCC--CCHHH
Confidence 67899999988 99999999999999999999984 4555 4677 899999999999999999999 99999
Q ss_pred Hhhhhhc--CCCCCCCCCCCCcC-cccccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhH
Q 006816 76 LKRLCKM--GSRTPGHPENVVTE-GIEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGIS 152 (630)
Q Consensus 76 l~~~r~~--~s~~~g~p~~~~~~-~~~~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~ 152 (630)
|++|||. ++.+++||.+...| +++++||+||+|+++|+|+|++.||+..+.- .+..+++|||++|||+++||.+
T Consensus 165 L~~fR~~~~g~gl~syPhp~~~p~~~~~~tgS~G~G~~~a~~~A~~~kyl~~~~~---~~~~~~rv~~~~GDGEldEg~~ 241 (891)
T PRK09405 165 LDNFRQEVDGKGLSSYPHPWLMPDFWQFPTVSMGLGPIMAIYQARFLKYLENRGL---KDTSDQKVWAFLGDGEMDEPES 241 (891)
T ss_pred HHHhcCCCCCCCCCCCCCcCCCCCCeecCccccchhHHHHHHHHHhCcccccccc---ccCCCceEEEEEcchhhccHHH
Confidence 9999998 77888999876666 5999999999999999999999987643210 1126899999999999999999
Q ss_pred HHHHHHhHHcCCCcEEEEEECCCCccccccccc--ChhcHHHHHHhCCCeEEEEe-------------------------
Q 006816 153 HEAAALAAHWKLNKLTLIYDDNHNTIDGPTSLV--LSEDISARFKSLGWNTIMVE------------------------- 205 (630)
Q Consensus 153 ~eal~~a~~~~L~~li~i~~~N~~~i~~~~~~~--~~~~~~~~~~a~G~~~~~v~------------------------- 205 (630)
|||+.+|++++|+||++|+|.|.+++++++... ..+++.++|++|||++++|+
T Consensus 242 ~EA~~~A~~~~LdNLi~ivD~N~q~lDG~v~~~~~~~~~l~~~f~a~GW~Vi~v~wG~~wd~l~~~d~~g~L~~~~~~~~ 321 (891)
T PRK09405 242 LGAISLAAREKLDNLIFVINCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGSRWDPLLAKDTSGKLVQLMNETV 321 (891)
T ss_pred HHHHHHHHHhCCCCEEEEEECCCcccCCccccccccchhHHHHHhhCCCEEEEEeccccchhhhccCCccHHHHHHHhCC
Confidence 999999999999999999999999999999853 36899999999999999985
Q ss_pred C-------------------------------------------CCCCHHHHHHHHHHHHhcCCCcEEEEEeecccccCc
Q 006816 206 N-------------------------------------------IHDNLSSFKEALMAAANETKKPTFIRVKKMRERVNW 242 (630)
Q Consensus 206 d-------------------------------------------G~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~~~g~ 242 (630)
| || |+.+|++|+++|++..++|++|.++|+||+ |.
T Consensus 322 Dg~yq~~~~~~ga~~R~~ffg~~~~~~~lv~~~sD~~i~~l~~gGH-D~~~i~~A~~~A~~~~~~PtvIia~TvkG~-G~ 399 (891)
T PRK09405 322 DGDYQTYKAKDGAYVREHFFGKYPETKALVADMSDDDIWALNRGGH-DPRKVYAAYKAAVEHKGQPTVILAKTIKGY-GM 399 (891)
T ss_pred cHHHHHHHhcccHHHHHHhcCCCHHHHHHHhhCCHHHHHHhccCCC-CHHHHHHHHHHHHhCCCCCEEEEEeceecC-CC
Confidence 4 99 999999999988864579999999999999 98
Q ss_pred cc-CC----CC---CCChHHHHHHHHhhhhchh-HHHHHHH-HHHhhhhcCCchhHhHHH--HhcCCCCCCccc----cC
Q 006816 243 VD-RD----QF---HVIPMVYREMQIQTDHGER-LEKEWCS-KVYNYRSKYPHEGAELDL--LLNGGLLPGWEN----AL 306 (630)
Q Consensus 243 ~~-~~----~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~p~~~~~----~~ 306 (630)
.+ -+ .| .+..+.++.++... |.. ..++... .+..+.+..|+.....++ .+.+..|..... ..
T Consensus 400 ~~~~e~~~~~H~~~~l~~e~~~~~r~~~--g~~~~d~~~~~~~~~~~~~~s~e~~~l~~~r~~l~g~~p~r~~~~~~~~~ 477 (891)
T PRK09405 400 GEAGEGKNIAHQVKKLDLDDLKHFRDRF--NIPISDEQLEKLPYYKPGEDSPEIKYLHERRKALGGYLPARRPKFEPLEV 477 (891)
T ss_pred CcccCCCccccCCCCCCHHHHHHHHHHc--CCCCChhHhccCCCcCCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCCC
Confidence 32 12 13 24566677776543 111 1111110 011112222222111111 233333332111 11
Q ss_pred C---CCC-----CCCCCchHHHHHHHHHHHHHHh---CCCeEEEecCCCCCcccc--cccccCcC---------------
Q 006816 307 P---KWS-----TSDPLDATRGYSEKCLNQLAKV---LPGLIGGSADLASSNKAY--LLGYHDFS--------------- 358 (630)
Q Consensus 307 ~---~~~-----~~~~~~~~r~a~~~~L~~l~~~---~~~iv~~~aD~~~s~~~~--~~~~~~f~--------------- 358 (630)
| .|. .++++++||.+|+++|.+|++. +++||.+++|++.+++.. |+..+.|+
T Consensus 478 P~~~~~~~~~~~~~~~~~sT~~Afgr~L~~L~~~~~~~~riV~i~pD~a~t~g~~~~f~~~gi~~~~gq~y~~~d~~~~~ 557 (891)
T PRK09405 478 PALSAFEALLKGSGEREISTTMAFVRILNILLKDKEIGKRIVPIIPDEARTFGMEGLFRQIGIYNPHGQLYTPVDRDQLM 557 (891)
T ss_pred CChhhHHHhhccCCCCcccHHHHHHHHHHHHHhccccCCcEEEeccccccccCcchhhccccccccccccccccccHHHH
Confidence 2 231 2347789999999999999996 899999999999988762 22222221
Q ss_pred -CCCCCCCCccccccchHHHHH--HHHHHHhc--CCCCceEeeehHHH-HHhhHHHHHHh-cccCCCeEEEEecCCCCCC
Q 006816 359 -QPDSPWGRNIRYGVREHAMAG--ISNGVALH--GGGLIPFAATFLIF-SDYMKNSIRLS-ALSHAGVIYILTHDSIGLG 431 (630)
Q Consensus 359 -~~~~~p~R~~~~gIaE~~~vg--~a~GlA~~--G~~~~pv~~~~~~F-~~~a~dqi~~~-a~~~~pv~~v~~~~g~~~g 431 (630)
.++.||+|||++||+||+|++ +|+|+|+. |.|++||+.+|++| ++|++||||++ |+++.+|++++|++|.+++
T Consensus 558 ~yke~~PgRf~e~GIAEqnmv~~~vAAGlA~a~~G~g~iPF~~tya~F~~~Ra~Dqir~a~~~~~~~v~iggt~gg~tl~ 637 (891)
T PRK09405 558 YYKESKDGQILQEGINEAGAMASWIAAATSYSTHGEPMIPFYIYYSMFGFQRIGDLAWAAGDQRARGFLLGGTAGRTTLN 637 (891)
T ss_pred HHHHcCCCcEEEechhhhHHHHHHHHHHHhhhhcCCCceEEEEehHHhhhhhHHHHHHHHHHhcCCCeEEEEECccccCC
Confidence 036899999999999999999 99997776 42389999999999 57999999996 9999999999999999999
Q ss_pred CCCCCCCChhhhHHhhcCCCcEEEecCChHHHHHHHHHHHH----cCCC--cEEEEEcCCCcccccCCCccccccccc--
Q 006816 432 EDGPTHQPVEQLAGLRAVPRLLAFRPADGNETAGSYRVAIA----NRDV--PSVIALSRQKIAANLEGTSADEVERGG-- 503 (630)
Q Consensus 432 ~~G~tHq~~~d~a~l~~iP~l~v~~P~d~~e~~~~l~~a~~----~~~~--P~~ir~~r~~~~~~~~~~~~~~~~~G~-- 503 (630)
.+|.|||..+|++++|++|||+||.|+|+.|++.+++.+++ . .+ |.|||+...+. ...+......+.+|+
T Consensus 638 ~eG~qHqdg~s~~l~raiPn~tv~~PADa~E~a~iv~~~l~rm~~~-~~~~~yYlrl~ne~~-~~~~~pe~~~~~igKg~ 715 (891)
T PRK09405 638 GEGLQHEDGHSHILASTIPNCVSYDPAFAYEVAVIVQDGLRRMYGE-QENVFYYITVMNENY-HQPAMPEGAEEGILKGM 715 (891)
T ss_pred CCcccCCchhhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHhhc-CCCeEEEEEeCCCCC-CCCCCCcccccccceEE
Confidence 99999999999999999999999999999999999999876 4 44 77788863333 221110112244444
Q ss_pred EEEecCCCCC-CCcEEEEEeCchHHHHHHHHHHHHh-cCCceEEEEcccccccCcccHHHHh----------------cc
Q 006816 504 YIVSDNSSEN-KPEIILIGTGTELSLCEGTAKTLRQ-EGRRVRVVSLVCWRLFDRQPAEYKE----------------KV 565 (630)
Q Consensus 504 ~~~~~~~~~G-~~dvtiva~G~~v~~a~~aa~~L~~-~gi~~~Vi~~~~i~pld~~~~~~~~----------------~v 565 (630)
|++++.+..+ +.||+|+++|.++++|++||+.|++ +||+++|||++|+||||++.+.... .+
T Consensus 716 y~Lr~g~~~~~~~dV~LlasG~~v~eAL~AAe~L~~~~GI~a~Visv~SikpLdrd~i~~~~~~~l~~~~~~~~~~V~t~ 795 (891)
T PRK09405 716 YKLETAEGKKGKPKVQLLGSGTILREVLEAAEILAEDYGVAADVWSVTSFNELARDGQDVERWNMLHPTEEPRVPYVTQV 795 (891)
T ss_pred EEeccCCCCCCCCCEEEEeccHHHHHHHHHHHHHhhhhCCCeEEEECCCCCHhhHHHHHHHHHhhcCcccccccchhhhh
Confidence 6676520000 0389999999999999999999998 7999999999999999999864211 01
Q ss_pred CC-CCCeeEEEEecCCccc---ccccccCcceEEEeccCCCCCCHHHHHHHcCCChHHHHHHHHHhhh
Q 006816 566 LP-SRVVKRVSVEAGSSVG---WREYVGVEGKVIGVEEFGASGAYLDTFKKYGFTIDNVTKVARSLLS 629 (630)
Q Consensus 566 ~~-~~~~~~v~vEe~~~~g---~~~~~~~~~~~~g~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l~ 629 (630)
++ ++.++ |++||+...- ..++...++.++|+|.|+.||++++|+++||+|+++|+++++++|.
T Consensus 796 ee~~gG~~-Vtv~D~~~aVae~la~~~p~~~~~LGvD~FG~SGt~~~L~~~fglda~~Iv~aal~~La 862 (891)
T PRK09405 796 LKGAEGPV-VAATDYMKLFAEQIRAFVPGDYVVLGTDGFGRSDTREALRRFFEVDAEYVVVAALKALA 862 (891)
T ss_pred hcccCCcE-EEecchHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 11 11222 6666664211 1123345788999999999999999999999999999999999874
No 20
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=100.00 E-value=2.2e-74 Score=642.60 Aligned_cols=615 Identities=20% Similarity=0.212 Sum_probs=480.5
Q ss_pred hHHHHHhhcC------CCCCCCcccHHHHHHHHHHHhhccCCCCCCCCCCCeEEecCcChhHHHHHHHHHcCCCCCCHHH
Q 006816 2 LIVDAVQNAK------AGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQYVCLHLAGFQSVQLED 75 (630)
Q Consensus 2 ~~~~~~~~~~------~GH~g~~ls~~~~~~~L~~~~~~~d~~~~~~~~~Dr~v~s~gH~~~~~y~~~~l~G~~~~~~~~ 75 (630)
++++|+.+++ +||+|+++|+++|+.+||.++|+.+| .+.+||+ |+|+||++|++|+++++.|+ ++.++
T Consensus 85 ~ai~MV~~A~~~~~~vgGHigsslS~adIl~vLy~~~lr~~~---~~~~rD~-VlSKGHasp~lYA~L~l~G~--ls~e~ 158 (885)
T TIGR00759 85 NAIAMVLRANKKDLGLGGHISTYASAATLYEVGFNHFFRGHS---EGGGGDL-VFFQGHAAPGIYARAFLEGR--LTEEQ 158 (885)
T ss_pred HHHHHHHHcCCCCCCCCCCcCCcHHHHHHHHHHHHHhcCCCC---CCCCCCE-EEECCcHHHHHHHHHHHcCC--CCHHH
Confidence 5889999999 99999999999999999999999654 4568995 99999999999999999999 99999
Q ss_pred Hhhhhhc--CCCCCCCCCCCCcC-cccccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhH
Q 006816 76 LKRLCKM--GSRTPGHPENVVTE-GIEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGIS 152 (630)
Q Consensus 76 l~~~r~~--~s~~~g~p~~~~~~-~~~~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~ 152 (630)
|++|||. ++.+++||++...| +++++||+||+|+++|+|+|++.|++.++++.. ..+++|||++||||++||.+
T Consensus 159 L~~FRq~~~g~gL~shPhp~~~p~~ve~sTGSLG~Gls~AvG~Ala~Kyl~~rg~~~---~~~~rVyvllGDGEldEG~s 235 (885)
T TIGR00759 159 LDNFRQEVQGDGLSSYPHPWLMPDFWQFPTVSMGLGPINAIYQARFMKYLENRGLKD---TGDQKVWAFLGDGEMDEPES 235 (885)
T ss_pred HHHhcCCCCCCCCCCCCCcCcCCCCEEeCCCCccHHHHHHHHHHHHHHHHHhhccCC---CCCceEEEEEcchhhccHHH
Confidence 9999995 77788999865556 599999999999999999999999988776532 26899999999999999999
Q ss_pred HHHHHHhHHcCCCcEEEEEECCCCccccccccc--ChhcHHHHHHhCCCeEEEEe-------------------------
Q 006816 153 HEAAALAAHWKLNKLTLIYDDNHNTIDGPTSLV--LSEDISARFKSLGWNTIMVE------------------------- 205 (630)
Q Consensus 153 ~eal~~a~~~~L~~li~i~~~N~~~i~~~~~~~--~~~~~~~~~~a~G~~~~~v~------------------------- 205 (630)
|||+.+|++++|+||++|+|+|.+++++++... ..+++.++|+++||++++|+
T Consensus 236 wEA~~~Aa~~kLdNLi~IVD~N~~qlDG~v~~~~~i~e~le~~F~a~GW~Vi~V~wg~~wd~lf~~d~~g~L~~~m~~~~ 315 (885)
T TIGR00759 236 KGAITFAAREKLDNLTFVINCNLQRLDGPVRGNGKIIQELESLFRGAGWNVIKVLWGSEWDALLARDTSGVLVKLMNETV 315 (885)
T ss_pred HHHHHHHHHhCCCCEEEEEeCCCCccCCccccccccchhHHHHHHhcCCEEEEEecCccchHhhcCCCccHHHHHHHhcc
Confidence 999999999999999999999999999999854 35789999999999999985
Q ss_pred -------------------------------------------CCCCCHHHHHHHHHHHHhcCCCcEEEEEeecccccCc
Q 006816 206 -------------------------------------------NIHDNLSSFKEALMAAANETKKPTFIRVKKMRERVNW 242 (630)
Q Consensus 206 -------------------------------------------dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~~~g~ 242 (630)
||| |+.+|++|+++|++..++|++|.++|+||+ |.
T Consensus 316 dg~yq~~~~~~Ga~~R~~ffg~~~~l~~lv~~~sD~~i~~l~rgGH-D~~~I~~A~~~A~~~~grPTvIlA~TvKG~-G~ 393 (885)
T TIGR00759 316 DGDYQTYKAKDGAYVREHFFNRTPELKALVADMSDADIWALNRGGH-DPRKVYAAYAAAQEHKGQPTVILAKTIKGY-GM 393 (885)
T ss_pred cHHHHHHhhcchHHHHHHhccccHHHHHHhhccchhhhhhccCCCC-CHHHHHHHHHHHHhCCCCCEEEEEeeeecC-CC
Confidence 699 999999999988764568999999999999 88
Q ss_pred ccC-CC----CC---CChHHHHHHHHhhhhchhHHHHHH-HHHHhhhhcCCchhHhHHH--HhcCCCCCCccc----cCC
Q 006816 243 VDR-DQ----FH---VIPMVYREMQIQTDHGERLEKEWC-SKVYNYRSKYPHEGAELDL--LLNGGLLPGWEN----ALP 307 (630)
Q Consensus 243 ~~~-~~----~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~p~~~~~----~~~ 307 (630)
.+. ++ |+ ...+.++.|+....= ....++.. ..+..+.+..|+.....++ .+.|-+|..-.. ..|
T Consensus 394 ~~~~e~~n~~H~~k~l~~e~l~~~r~~~g~-~~~d~~~~~~~~~~~~~~s~e~~y~~~rr~~Lgg~~p~R~~~~~~l~vP 472 (885)
T TIGR00759 394 GDAAESRNTAHQVKKLEVDALKNFRDRFEL-PLSDAQVEELPYYHPGEGSPEVRYLLARRQALGGYLPARRTFAEHLTVP 472 (885)
T ss_pred ChhhCCCcccccCCCCCHHHHHHHHHHcCC-CCChhHhccCCCcCCCCCCHHHHHHHHHHHHhCCCCCCcCCCCCCCCCC
Confidence 522 21 32 356777888765310 00111111 0111122222332211121 344545542111 123
Q ss_pred C---CC-----CCCCCchHHHHHHHHHHHHHHhC---CCeEEEecCCCCCcccc--cccccCcC----------------
Q 006816 308 K---WS-----TSDPLDATRGYSEKCLNQLAKVL---PGLIGGSADLASSNKAY--LLGYHDFS---------------- 358 (630)
Q Consensus 308 ~---~~-----~~~~~~~~r~a~~~~L~~l~~~~---~~iv~~~aD~~~s~~~~--~~~~~~f~---------------- 358 (630)
. |. .+++.+||..+|.+.|..|++.- ++||.+.+|.+.+++.. |+..+.|+
T Consensus 473 ~l~~~~~~~~~~~~~~~STt~afvr~l~~L~r~~~~g~riVpi~pDeartfgm~g~f~~~gIy~~~gq~y~p~d~~~~~~ 552 (885)
T TIGR00759 473 ALEFFGALLKGSGEREVSTTMAFVRILNKLLKDKEIGKRIVPIVPDEARTFGMEGLFRQIGIYSPHGQTYTPVDADSLLA 552 (885)
T ss_pred CchhhHHHhcCCCCCCccHHHHHHHHHHHHhcCcccccceeecCCCccccCChHHhhcccCccCCCCccCCccchhhhhh
Confidence 2 11 23467899999999999999853 47999999998877654 44444442
Q ss_pred CCCCCCCCccccccchHHHHH--HHHHH--HhcCCCCceEeeehHHH-HHhhHHHHHHhcccCCCeEEEEecCCC-CCCC
Q 006816 359 QPDSPWGRNIRYGVREHAMAG--ISNGV--ALHGGGLIPFAATFLIF-SDYMKNSIRLSALSHAGVIYILTHDSI-GLGE 432 (630)
Q Consensus 359 ~~~~~p~R~~~~gIaE~~~vg--~a~Gl--A~~G~~~~pv~~~~~~F-~~~a~dqi~~~a~~~~pv~~v~~~~g~-~~g~ 432 (630)
.++.-.+|.++.||+|.+.++ +|+|. +++|..++||...|++| .||..|.+.-+|+|...-.++++.+|. +...
T Consensus 553 y~e~~~Gq~le~GI~E~g~~~~~~aagtsys~~g~~miP~yi~YsmFgfqR~gD~~waa~d~~argfl~g~taGrtTL~g 632 (885)
T TIGR00759 553 YKESKDGQILQEGINEAGAMASWIAAATSYATHGEPMIPFYIYYSMFGFQRIGDLCWAAADQRARGFLLGATAGRTTLNG 632 (885)
T ss_pred cccCCCCcchhhhhhhHHHHHHHHHHHhHHhhCCCeeeeeeEeeccccccchHHHHHHHhhhcCCceEeccCCCcccCCC
Confidence 012335899999999999988 46666 45787799999999999 899999999999999999999999988 4666
Q ss_pred CCCCCCChhhhHHhhcCCCcEEEecCChHHHHHHHHHHHHc---CCCcEEEEEcC--CCc-ccccCCCcccccccccEEE
Q 006816 433 DGPTHQPVEQLAGLRAVPRLLAFRPADGNETAGSYRVAIAN---RDVPSVIALSR--QKI-AANLEGTSADEVERGGYIV 506 (630)
Q Consensus 433 ~G~tHq~~~d~a~l~~iP~l~v~~P~d~~e~~~~l~~a~~~---~~~P~~ir~~r--~~~-~~~~~~~~~~~~~~G~~~~ 506 (630)
.|..||...-..+...+||+.-|-|+.+.|++.+++..++. ....+|++++- .++ .|..++...+.+..|.|++
T Consensus 633 EGlqHqdg~s~~~~~~~P~~~~ydPafa~Ela~i~~~g~~rm~~~~~~v~yylt~~ne~~~qp~~p~~~~egIlkG~Y~l 712 (885)
T TIGR00759 633 EGLQHEDGHSLLQAATIPNCIAYDPAFAYEVAVIMEDGLRRMYGEQEDVFYYVTVMNENYVQPPMPEGAEEGILKGLYRF 712 (885)
T ss_pred ccccCccccchHHHhcCCCceeecCchHHHHHHHHHHHHHHHhhCCCCEEEEEEecCCCCCCCCCCcchHHhHHhCceec
Confidence 79999988888888999999999999999999999988765 24577887765 333 1223332345688999999
Q ss_pred ecCCCCC-CCcEEEEEeCchHHHHHHHHHHHHhc-CCceEEEEcccccccCcccH--H--------------HHhccCCC
Q 006816 507 SDNSSEN-KPEIILIGTGTELSLCEGTAKTLRQE-GRRVRVVSLVCWRLFDRQPA--E--------------YKEKVLPS 568 (630)
Q Consensus 507 ~~~~~~G-~~dvtiva~G~~v~~a~~aa~~L~~~-gi~~~Vi~~~~i~pld~~~~--~--------------~~~~v~~~ 568 (630)
.+....+ ..+|.|+++|+.+++|++|+++|+++ |+.++|++++|.+-|.++.. + |....+..
T Consensus 713 ~~~~~~~~~~~VqLlgSG~il~evl~Aa~lL~~~~gV~adVwSvTS~~eL~Rd~~~~eR~n~lhP~~~~r~~~v~~~L~~ 792 (885)
T TIGR00759 713 ETSTEEKAKGHVQLLGSGAIMRAVIEAAQLLAADWGVASDVWSVTSFTELARDGHDVERWNLLHPTETPRVSYVAQVLNE 792 (885)
T ss_pred ccCCCCCCCccEEEEeccHHHHHHHHHHHHHHHHHCCCCcEEECCCHHHHHHhHHHHHHHHhcCCCCCccccHHHHHhcc
Confidence 8731100 14799999999999999999999975 99999999999998887643 1 11122222
Q ss_pred -CCeeEEEEecCCc---ccccccccCcceEEEeccCCCCCCHHHHHHHcCCChHHHHHHHHHhhh
Q 006816 569 -RVVKRVSVEAGSS---VGWREYVGVEGKVIGVEEFGASGAYLDTFKKYGFTIDNVTKVARSLLS 629 (630)
Q Consensus 569 -~~~~~v~vEe~~~---~g~~~~~~~~~~~~g~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l~ 629 (630)
..++ |++.|... ..+..|+..++..+|.|.|+.|++.++|+++|++|++.|+.++.+.|.
T Consensus 793 ~~gP~-va~tDy~~~~~~qir~~vp~~~~~LGtDgFGrSdtr~~lr~~fevDa~~IV~AAL~aL~ 856 (885)
T TIGR00759 793 ADAPV-IASTDYVRAFAEQIRPYVPRKYVTLGTDGFGRSDTRENLRHFFEVDAKSVVLAALYALA 856 (885)
T ss_pred CCCCE-EEEccchhhhHHHHhhhcCCCceEecCCCCCCCCCHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 2365 88888743 345566767788899999999999999999999999999999988764
No 21
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.2e-68 Score=517.61 Aligned_cols=295 Identities=27% Similarity=0.357 Sum_probs=270.3
Q ss_pred CchHHHHHHHHHHHHHHhCCCeEEEecCCCCCcccccccccCcCCCCCCCCCccccccchHHHHHHHHHHHhcCCCCceE
Q 006816 315 LDATRGYSEKCLNQLAKVLPGLIGGSADLASSNKAYLLGYHDFSQPDSPWGRNIRYGVREHAMAGISNGVALHGGGLIPF 394 (630)
Q Consensus 315 ~~~~r~a~~~~L~~l~~~~~~iv~~~aD~~~s~~~~~~~~~~f~~~~~~p~R~~~~gIaE~~~vg~a~GlA~~G~~~~pv 394 (630)
..++|++++++|.++++++++||++++|+.+|+.+. .| .++||+||||+||+||+|+|+|+|||+.| ++||
T Consensus 6 ~~~~R~~~g~~L~~l~~~~~diVvl~ADl~~St~~~-----~f--~~~fPdR~~NvGIaEQ~mvg~AAGLA~~G--k~Pf 76 (312)
T COG3958 6 TESLRKVYGETLAELGRKNSDIVVLDADLSSSTKTG-----YF--AKEFPDRFFNVGIAEQDMVGTAAGLALAG--KKPF 76 (312)
T ss_pred chHHHHHHHHHHHHHHhcCCCEEEEecccccccchh-----HH--HHhCchhheecchHHHHHHHHHHHHHhcC--CCce
Confidence 468999999999999999999999999999998753 47 36899999999999999999999999999 9999
Q ss_pred eeehHHHHH-hhHHHHHHh-cccCCCeEEEEecCCCCCCCCCCCCCChhhhHHhhcCCCcEEEecCChHHHHHHHHHHHH
Q 006816 395 AATFLIFSD-YMKNSIRLS-ALSHAGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAVPRLLAFRPADGNETAGSYRVAIA 472 (630)
Q Consensus 395 ~~~~~~F~~-~a~dqi~~~-a~~~~pv~~v~~~~g~~~g~~G~tHq~~~d~a~l~~iP~l~v~~P~d~~e~~~~l~~a~~ 472 (630)
+++|+.|+. |+||||||. ||+++||+++++|+|+++|+||+|||++||+++||.+||++|+.|||+.+++.+++++.+
T Consensus 77 v~tfa~F~s~Ra~EQir~~iay~~lnVKiv~t~~G~t~g~dG~sHq~~EDiaimR~lpn~~V~~P~D~v~~~~i~~~~~~ 156 (312)
T COG3958 77 VSTFAAFLSRRAWEQIRNSIAYNNLNVKIVATHAGVTYGEDGSSHQALEDIAIMRGLPNMTVIAPADAVETRAILDQIAD 156 (312)
T ss_pred eechHHHHHHHHHHHHHHHhhhccCCeEEEEecCCcccCCCCccchhHHHHHHHhcCCCceEEccCcHHHHHHHHHHHHh
Confidence 999999998 999999996 999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEEEEcCCCcccccCCCcccccccccEEEecCCCCCCCcEEEEEeCchHHHHHHHHHHHHhcCCceEEEEccccc
Q 006816 473 NRDVPSVIALSRQKIAANLEGTSADEVERGGYIVSDNSSENKPEIILIGTGTELSLCEGTAKTLRQEGRRVRVVSLVCWR 552 (630)
Q Consensus 473 ~~~~P~~ir~~r~~~~~~~~~~~~~~~~~G~~~~~~~~~~G~~dvtiva~G~~v~~a~~aa~~L~~~gi~~~Vi~~~~i~ 552 (630)
. ++|+|+|+.|.++ |.+..+..+.|.+|++.+++ + | +|+|||++|.|++.|++||+.|+++||++.||||.+||
T Consensus 157 ~-~GP~Y~Rl~R~~~-p~~~~~~~~~F~iGka~vLr--d-G-~D~tiiA~G~mv~~al~AA~~L~~~GIsa~Vi~m~tIK 230 (312)
T COG3958 157 Y-KGPVYMRLGRGKV-PVVVDEGGYTFEIGKANVLR--D-G-SDLTIIATGVMVAEALEAAEILKKEGISAAVINMFTIK 230 (312)
T ss_pred c-CCCEEEEecCCCC-CceecCCCceEeccceeEee--c-C-CceEEEecCcchHHHHHHHHHHHhcCCCEEEEecCccC
Confidence 8 9999999999888 66655456789999988887 5 8 99999999999999999999999999999999999999
Q ss_pred ccCcccHHHHhccCCCCCeeEEEEecCCcccc-c----ccc----cCcceEEEe-ccCCCCCCHHHHHHHcCCChHHHHH
Q 006816 553 LFDRQPAEYKEKVLPSRVVKRVSVEAGSSVGW-R----EYV----GVEGKVIGV-EEFGASGAYLDTFKKYGFTIDNVTK 622 (630)
Q Consensus 553 pld~~~~~~~~~v~~~~~~~~v~vEe~~~~g~-~----~~~----~~~~~~~g~-d~f~~~g~~~~l~~~~gl~~~~I~~ 622 (630)
|+|++++.. ...+++ ++ ||+|||+..|+ | +++ ..+++++|+ +.|+.+|...+|+++||||+++|++
T Consensus 231 PiD~~~i~~--~A~~t~-~I-vT~EeHsi~GGlGsaVAEvlse~~p~~~~riGvp~~fg~sg~~~~Ll~~ygl~~~~I~~ 306 (312)
T COG3958 231 PIDEQAILK--AARETG-RI-VTAEEHSIIGGLGSAVAEVLSENGPTPMRRIGVPDTFGRSGKADELLDYYGLDPESIAA 306 (312)
T ss_pred CCCHHHHHH--HHhhcC-cE-EEEecceeecchhHHHHHHHHhcCCcceEEecCCchhccccchHHHHHHhCCCHHHHHH
Confidence 999999873 344554 45 99999999876 3 332 247789999 9999999999999999999999999
Q ss_pred HHHHhh
Q 006816 623 VARSLL 628 (630)
Q Consensus 623 ~i~~~l 628 (630)
++++++
T Consensus 307 ~v~~~~ 312 (312)
T COG3958 307 RVLELL 312 (312)
T ss_pred HHHhhC
Confidence 999874
No 22
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=100.00 E-value=5.2e-66 Score=536.07 Aligned_cols=295 Identities=45% Similarity=0.753 Sum_probs=263.1
Q ss_pred hHHHHHhhcCCCCCCCcccHHHHHHHHHHHhhccCCCCCCCCCCCeEEecCcChhHHHHHHHHHcCCCCCCHHHHhhhhh
Q 006816 2 LIVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQYVCLHLAGFQSVQLEDLKRLCK 81 (630)
Q Consensus 2 ~~~~~~~~~~~GH~g~~ls~~~~~~~L~~~~~~~d~~~~~~~~~Dr~v~s~gH~~~~~y~~~~l~G~~~~~~~~l~~~r~ 81 (630)
++++|+.++++||+|++||++||+++||..+|++||+||.|++|||||+|+||+++++|+++++.|++ ++.++|++||+
T Consensus 11 ~~~~~~~~a~sGH~G~~ls~a~i~~~Ly~~~l~~~p~~p~~~~rDrfvlSkGH~~~~lYa~l~~~G~~-~~~~~L~~fr~ 89 (332)
T PF00456_consen 11 LILDMVQKAGSGHPGSSLSAADILYALYFKVLRYDPKNPKWPNRDRFVLSKGHASPALYAILALRGYD-LSEEDLKTFRQ 89 (332)
T ss_dssp HHHHHHHHHT-S-SHHHHHHHHHHHHHHHHT-BBBTTBTTSTTS-EEEESSGGGHHHHHHHHHHTTSS-S-HHHHTTTTS
T ss_pred HHHHHHHHhCCCCCcchHHHHHHHHHHHhhccccCCccccCCCCCcEEEeccchhHHHHHHHHHhcCC-CCHHHHHHhcc
Confidence 68999999999999999999999999999999999999999999999999999999999999999995 99999999999
Q ss_pred cCCCCCCCCCCCCcCcccccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHH
Q 006816 82 MGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAH 161 (630)
Q Consensus 82 ~~s~~~g~p~~~~~~~~~~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~ 161 (630)
.+|.++|||++..+||++++||+||||+++|+|+|+|.|+++++||+++++..+++|||++|||++|||.+|||+.+|++
T Consensus 90 ~~s~~~gHP~~~~~~gie~stGsLGqGl~~avG~Ala~k~~~~~~n~~~~~~~~~~vy~l~GDGel~EG~~~EA~~~A~~ 169 (332)
T PF00456_consen 90 LGSRLPGHPEYGKTPGIEASTGSLGQGLSIAVGMALAEKMLGARFNKPGFDIIDHRVYVLMGDGELQEGSVWEAASLAGH 169 (332)
T ss_dssp TTSSSSSSTTTTTSTT-SS--SSTTHHHHHHHHHHHHHHHHHHHHHBTTBSTTT--EEEEEEHHHHHSHHHHHHHHHHHH
T ss_pred CCCCCCCCCcccCCceeEeeccchhcchhhHHHHHHHHHHHHhhhcccccccccceEEEEecCccccchhhHHHHHHHHH
Confidence 99999999998789999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred cCCCcEEEEEECCCCcccccccccChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeecccccC
Q 006816 162 WKLNKLTLIYDDNHNTIDGPTSLVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRERVN 241 (630)
Q Consensus 162 ~~L~~li~i~~~N~~~i~~~~~~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~~~g 241 (630)
++|+|||+|+|+|++++++.+.....+++.++|++|||++++|.||| |+++|.+|+++|++..++|++|+++|+||+ |
T Consensus 170 ~~L~nLi~i~D~N~~q~dg~~~~~~~~~~~~k~~a~Gw~v~~v~dGh-d~~~i~~A~~~a~~~~~kP~~Ii~~TvkG~-G 247 (332)
T PF00456_consen 170 YKLDNLIVIYDSNGIQIDGPTDIVFSEDIAKKFEAFGWNVIEVCDGH-DVEAIYAAIEEAKASKGKPTVIIARTVKGK-G 247 (332)
T ss_dssp TT-TTEEEEEEEESEETTEEGGGTHHSHHHHHHHHTT-EEEEEEETT-BHHHHHHHHHHHHHSTSS-EEEEEEE-TTT-T
T ss_pred hCCCCEEEEEecCCcccCCCcccccchHHHHHHHHhhhhhcccccCc-HHHHHHHHHHHHHhcCCCCceeecceEEec-C
Confidence 99999999999999999999988778899999999999999977999 999999999999874589999999999998 7
Q ss_pred ccc---------------------------CCCCCCChHHHHHHHHhhhhchhHHHHHHHHHHhhhhcCCchhHhHHHHh
Q 006816 242 WVD---------------------------RDQFHVIPMVYREMQIQTDHGERLEKEWCSKVYNYRSKYPHEGAELDLLL 294 (630)
Q Consensus 242 ~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (630)
.+. .++|.+|+|+++.|++...++...+++|++.+++|+..+|+.++++++.+
T Consensus 248 ~~~~e~~~~~Hg~~l~~ee~~~~k~~lg~~~~~F~V~~eV~~~f~~~~~~g~~~~~~W~~~~~~y~~~~P~~a~el~~~l 327 (332)
T PF00456_consen 248 VPFMEGTAKWHGSPLTEEEVEQAKKELGWDQEPFEVPEEVYDHFRERIAEGAKAEAEWKELFAAYKKKYPEEAQELERRL 327 (332)
T ss_dssp STTTTTSGGGTSS--HHHHHHHHHHHTTSSTSTTCGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred chhhcccchhhccCCcHHHHHHHHHHcCCCCCCcccCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
Confidence 631 23466888999999988888999999999999999999999999999999
Q ss_pred cCCCC
Q 006816 295 NGGLL 299 (630)
Q Consensus 295 ~~~~p 299 (630)
++++|
T Consensus 328 ~g~lP 332 (332)
T PF00456_consen 328 NGELP 332 (332)
T ss_dssp TT---
T ss_pred cCCCC
Confidence 98876
No 23
>PRK05261 putative phosphoketolase; Provisional
Probab=100.00 E-value=3.8e-63 Score=554.27 Aligned_cols=575 Identities=20% Similarity=0.237 Sum_probs=428.2
Q ss_pred hHHHHHhhcCCCCCCCcccHHHHHHHHHHHhhccCCCCCCCCCCCe-EEecCcChhHHHHHHHHHcC-----CCCCCHHH
Q 006816 2 LIVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDR-FVLSAGHGCLLQYVCLHLAG-----FQSVQLED 75 (630)
Q Consensus 2 ~~~~~~~~~~~GH~g~~ls~~~~~~~L~~~~~~~d~~~~~~~~~Dr-~v~s~gH~~~~~y~~~~l~G-----~~~~~~~~ 75 (630)
|..+.++....||+|++-|...+++.|.+..-++| .|+ ||+|.||++|++||.++|.| +.+++.++
T Consensus 39 l~~~~~K~r~~GHwGt~pgln~vyahln~li~~~~--------~~~~~V~g~GHg~p~~~a~~~L~Gs~~~~yp~is~d~ 110 (785)
T PRK05261 39 LKPEHVKPRLLGHWGTTPGLNFIYAHLNRLIRKYD--------LNMIYITGPGHGGPAMVANAYLEGTYSEIYPEITQDE 110 (785)
T ss_pred CCHHHCCcccCCCCCCcHHHHHHHHHHHHHHhhcC--------CceEEEeCCCccHHHHHHHHHHcCCCcccCCCCCccH
Confidence 34567888889999999999999998888765654 464 58999999999999999999 54466666
Q ss_pred --Hh-hhhhcCCC--CCCCCCCCCcCcccccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCch
Q 006816 76 --LK-RLCKMGSR--TPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEG 150 (630)
Q Consensus 76 --l~-~~r~~~s~--~~g~p~~~~~~~~~~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG 150 (630)
|+ .|||+++. ++|||+ ..+||++.++|+||+|++.|+|+|++. ++.+|+|++|||++++|
T Consensus 111 ~gl~~lfrqfs~pgg~~sH~~-~~tPGi~~~~G~LG~gls~A~G~Al~~--------------~d~iv~~~vGDGE~EeG 175 (785)
T PRK05261 111 EGMARLFKQFSFPGGIPSHAA-PETPGSIHEGGELGYSLSHAYGAAFDN--------------PDLIVACVVGDGEAETG 175 (785)
T ss_pred HHHHHHHHhccCCCCcCCCCC-CCCCCeeeCCCchhhHHHHHHHHHHcC--------------CCCEEEEEECcCchhhh
Confidence 87 69999877 899999 689999999999999999999999876 78899999999999999
Q ss_pred h---HHHHHHHhHHcCCCcEEEEEECCCCccccccccc--ChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHH--------
Q 006816 151 I---SHEAAALAAHWKLNKLTLIYDDNHNTIDGPTSLV--LSEDISARFKSLGWNTIMVENIHDNLSSFKEA-------- 217 (630)
Q Consensus 151 ~---~~eal~~a~~~~L~~li~i~~~N~~~i~~~~~~~--~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~a-------- 217 (630)
. +|++.+++...++++++.|+++|+|+|++++... ..+++.++|++|||+++.| ||| |++++.++
T Consensus 176 ~lAa~W~~~~~~~~~~~g~vLPIld~Ng~~Is~pt~~~~~~~e~l~~rf~g~Gw~~i~V-DG~-D~~av~~a~a~al~~~ 253 (785)
T PRK05261 176 PLATSWHSNKFLNPATDGAVLPILHLNGYKIANPTILARISDEELEALFRGYGYEPYFV-EGD-DPADMHQEMAAALDTA 253 (785)
T ss_pred hhHHHhhhhhhcccccCCCEEEEEEecCCcCCCCccccccCcHhHHHHHHHCCCeeEEE-CCC-CHHHHHHHHHHHHHHH
Confidence 8 5999999999999999999999999999999854 3478999999999999998 999 99988877
Q ss_pred HH-------HHHhcC---CCcE--EEEEeecccccCcccC-------CC----CCCC--hH-HHHHHHHhhhhchhHHHH
Q 006816 218 LM-------AAANET---KKPT--FIRVKKMRERVNWVDR-------DQ----FHVI--PM-VYREMQIQTDHGERLEKE 271 (630)
Q Consensus 218 l~-------~a~~~~---~~P~--~i~~~t~k~~~g~~~~-------~~----~~~~--~~-~~~~~~~~~~~~~~~~~~ 271 (630)
++ +||. + .+|+ +|+++|.||+ |- |. ++ |.+| .+ ..... ....++
T Consensus 254 i~~i~~iq~~Ar~-~~~~~~P~wp~Ii~rT~kG~-g~-p~~~dg~~~eGs~raHqvPL~~~~~~~~~-------~~~L~~ 323 (785)
T PRK05261 254 IEEIRAIQKEARE-GGDTTRPRWPMIVLRTPKGW-TG-PKEVDGKPIEGSWRAHQVPLANVRDNPEH-------LDLLED 323 (785)
T ss_pred HHHHHHHHHHHHh-CCCCCCCCceEEEEECCccC-CC-CcccCCcccCCCchhhcCCCCCcccCHHH-------HHHHHH
Confidence 34 4443 3 5899 9999999998 73 31 21 3333 11 00011 112334
Q ss_pred HHHHHH-------------hhhhcCCchhHhHHHHhcCCCCC-----Ccc-ccCCCCC--------C-CCCCchHHHHHH
Q 006816 272 WCSKVY-------------NYRSKYPHEGAELDLLLNGGLLP-----GWE-NALPKWS--------T-SDPLDATRGYSE 323 (630)
Q Consensus 272 ~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~p~-----~~~-~~~~~~~--------~-~~~~~~~r~a~~ 323 (630)
|.+.+. ++....|+-. +.+.. .|. .+. ..+|+|. + .....+||. ++
T Consensus 324 wl~sy~p~elF~~~g~l~~~~~~l~p~g~----~r~~~-~P~ang~~~~~~l~lp~~~~~~~~~~~~g~~~~~atr~-~g 397 (785)
T PRK05261 324 WLRSYRPEELFDEDGRLKPELAALAPKGD----RRMGA-NPHANGGLLLRDLRLPDFRDYAVPVGKPGAVMAEATRV-LG 397 (785)
T ss_pred HhhcCChhhhcCCCCchhHHHHHhccCch----hhhcC-CchhcCCcCccccCCCchHhhcccccCCCccccccHHH-HH
Confidence 432110 0111111100 11110 010 000 1234442 1 124568887 99
Q ss_pred HHHHHHHHhCCC-eEEEecCCCCCcccc--cccc-cCcCC--------CCCCCCCccccccchHHHHHHHHHHHhcCCCC
Q 006816 324 KCLNQLAKVLPG-LIGGSADLASSNKAY--LLGY-HDFSQ--------PDSPWGRNIRYGVREHAMAGISNGVALHGGGL 391 (630)
Q Consensus 324 ~~L~~l~~~~~~-iv~~~aD~~~s~~~~--~~~~-~~f~~--------~~~~p~R~~~~gIaE~~~vg~a~GlA~~G~~~ 391 (630)
+.|.++++.+|+ ++++++|+..|+++. |..+ +.+ . .....+|+++ +|+|++|.|++.|+++.| .
T Consensus 398 ~~l~~v~~~np~~frvf~pDe~~SNrl~~~f~~t~r~~-~~~~~~~d~~~~~~Grvie-~LsEh~~~g~~~Gy~LtG--~ 473 (785)
T PRK05261 398 KYLRDVIKLNPDNFRIFGPDETASNRLQAVFEVTDRQW-MAEILPYDEHLAPDGRVME-VLSEHLCEGWLEGYLLTG--R 473 (785)
T ss_pred HHHHHHHHhCCCceEEEcCCcchhhccHhHHhhhcccc-ccccCCcccccCCCCCeee-eecHHHHHHHHHHHHhcC--C
Confidence 999999999999 999999999888743 2211 001 0 1133489999 999999999999999988 9
Q ss_pred ceEeeehHHHH---HhhHHHH----HHhc-------ccCCCeEEEEecCCCCCCCCCCCCCC---hhhhHHhhcCCCcEE
Q 006816 392 IPFAATFLIFS---DYMKNSI----RLSA-------LSHAGVIYILTHDSIGLGEDGPTHQP---VEQLAGLRAVPRLLA 454 (630)
Q Consensus 392 ~pv~~~~~~F~---~~a~dqi----~~~a-------~~~~pv~~v~~~~g~~~g~~G~tHq~---~~d~a~l~~iP~l~v 454 (630)
++++.+|..|+ ++|+.|+ |... +..++ ++.|++.+..|+||+|||. ++.++.+|+ |+++|
T Consensus 474 ~~~~~sYeaF~~ivd~m~~q~~kw~r~~~~~~wr~~~~sLn--~l~Ts~~~~qghNG~THQ~Pg~ie~l~~~r~-~~~rV 550 (785)
T PRK05261 474 HGFFSSYEAFIHIVDSMFNQHAKWLKVAREIPWRKPIPSLN--YLLTSHVWRQDHNGFSHQDPGFIDHVANKKP-DVIRV 550 (785)
T ss_pred CcceecHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCccee--EEeecceeecCCCCCCCCCchHHHHHHhcCC-CcceE
Confidence 99999999999 8999997 6431 23334 6668999999999999999 999999999 99999
Q ss_pred EecCChHHHHHHHHHHHHcCCCcEEEEEcCCCcccccCCCc--ccccccccEEEecCC--CCCCCcEEEEEeCchHHH-H
Q 006816 455 FRPADGNETAGSYRVAIANRDVPSVIALSRQKIAANLEGTS--ADEVERGGYIVSDNS--SENKPEIILIGTGTELSL-C 529 (630)
Q Consensus 455 ~~P~d~~e~~~~l~~a~~~~~~P~~ir~~r~~~~~~~~~~~--~~~~~~G~~~~~~~~--~~G~~dvtiva~G~~v~~-a 529 (630)
|.|+|++|+..+++.|++++++|++|.++|++. |++.... ...+..|.|++...+ .++++||+|+++|+++.. |
T Consensus 551 ~rPaDaNe~laa~~~al~s~~~p~~IvlsRQ~l-p~~~~~~~a~~~~~kGayi~~~a~~~~~~~pDvvL~atGsev~leA 629 (785)
T PRK05261 551 YLPPDANTLLAVADHCLRSRNYINVIVAGKQPR-PQWLSMDEARKHCTKGLGIWDWASNDDGEEPDVVLACAGDVPTLET 629 (785)
T ss_pred EeCCCHHHHHHHHHHHHHhCCCCEEEEEeCCCC-cccCChHHHHHhccCceEEEEeccCCCCCCCCEEEEEeCcHhhHHH
Confidence 999999999999999999889999999999999 7764422 346889999998531 112379999999999988 9
Q ss_pred HHHHHHHHhc--CCceEEEEcccccccCcccHH---------HHhccCCCCCeeEEEEecCCc--ccc-ccccc-CcceE
Q 006816 530 EGTAKTLRQE--GRRVRVVSLVCWRLFDRQPAE---------YKEKVLPSRVVKRVSVEAGSS--VGW-REYVG-VEGKV 594 (630)
Q Consensus 530 ~~aa~~L~~~--gi~~~Vi~~~~i~pld~~~~~---------~~~~v~~~~~~~~v~vEe~~~--~g~-~~~~~-~~~~~ 594 (630)
++|+++|+++ ||+++||++. ++|+.|... ...+++.+.+++++...-... .+. ..... .+...
T Consensus 630 laAa~~L~~~~pgikvRVVSv~--dLf~lQ~~~~~~~~lsd~~f~~lFt~d~pvif~~hgyp~~i~~l~~~r~~~~~~~v 707 (785)
T PRK05261 630 LAAADLLREHFPDLKIRVVNVV--DLMKLQPPSEHPHGLSDREFDALFTTDKPVIFAFHGYPWLIHRLTYRRTNHHNFHV 707 (785)
T ss_pred HHHHHHHHhhCCCCCEEEEEec--hhhhhCCcccCCCCCCHHHHHHhCCCCCcEEEEeCCCHHHHHHHhccCCCCCccEE
Confidence 9999999999 9999999994 777766532 123455555555333321110 000 01111 23445
Q ss_pred EEeccCCCCCCHHHHHHHcCCChHHHHHHHHHh
Q 006816 595 IGVEEFGASGAYLDTFKKYGFTIDNVTKVARSL 627 (630)
Q Consensus 595 ~g~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~ 627 (630)
.|..+-+..-++-+++-..++|--+++..+.+-
T Consensus 708 ~gy~e~g~tttp~dm~~~N~~~r~~l~~~a~~~ 740 (785)
T PRK05261 708 RGYKEEGTTTTPFDMVVLNELDRFHLAIDAIDR 740 (785)
T ss_pred EEEecCCCCCCHHHHHHHhCCCHHHHHHHHHHh
Confidence 666444555567889999999999888877653
No 24
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.5e-59 Score=438.90 Aligned_cols=222 Identities=40% Similarity=0.634 Sum_probs=212.5
Q ss_pred HHHHHhhcCCCCCCCcccHHHHHHHHHHHhhccCCCCCCCCCCCeEEecCcChhHHHHHHHHHcCCCCCCHHHHhhhhhc
Q 006816 3 IVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQYVCLHLAGFQSVQLEDLKRLCKM 82 (630)
Q Consensus 3 ~~~~~~~~~~GH~g~~ls~~~~~~~L~~~~~~~d~~~~~~~~~Dr~v~s~gH~~~~~y~~~~l~G~~~~~~~~l~~~r~~ 82 (630)
+++|+..+++||+|++||++||+++||.+.|+++|++|.|++|||||+||||++|++||+|+..|+ ++.|+|++|++.
T Consensus 21 ~v~m~~~~~~GH~G~SLS~~eILa~LYf~~m~~~p~~p~~~~RDrfiLSKGHaa~AlYa~Lae~G~--~p~eeL~~~~~~ 98 (243)
T COG3959 21 IVRMLANAGSGHVGGSLSVVEILAVLYFKIMNIDPDDPKWPGRDRFILSKGHAAPALYATLAEKGY--FPEEELETFRRI 98 (243)
T ss_pred HHHHhcccCCCCcCccchHHHHHHHHHHHHhccCCCCCCCCCCCeEEEecccchHHHHHHHHHcCC--CCHHHHHHhccC
Confidence 578999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred CCCCCCCCCCCCcCcccccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHc
Q 006816 83 GSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHW 162 (630)
Q Consensus 83 ~s~~~g~p~~~~~~~~~~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~ 162 (630)
+|++||||++..+||++.+||+||||||.|+|||++.|+++ .+.+|||++|||+++||++|||+++|+++
T Consensus 99 ~srL~~Hp~~~~~pgve~stGSLGqGLsvavGmAlg~kl~~----------~~~~VyvilGDGEl~EG~~WEAam~Aah~ 168 (243)
T COG3959 99 GSRLPGHPERNKTPGVEVSTGSLGQGLSVAVGMALGAKLKG----------SPYRVYVILGDGELDEGQVWEAAMTAAHY 168 (243)
T ss_pred CCcCCCCCccCCCCceeecCCcccccchHHHHHHHHHhhcC----------CCceEEEEecCcccccccHHHHHHHHHHh
Confidence 99999999987899999999999999999999999999887 68899999999999999999999999999
Q ss_pred CCCcEEEEEECCCCccccccccc-ChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeeccc
Q 006816 163 KLNKLTLIYDDNHNTIDGPTSLV-LSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRE 238 (630)
Q Consensus 163 ~L~~li~i~~~N~~~i~~~~~~~-~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~ 238 (630)
+|+|||.|+|.|+.|+++.+.+. ..+++.++|++|||++++| ||| |+++|.+|+++++...++|++|+++|.|+
T Consensus 169 ~L~NLiaivD~N~~QldG~t~~i~~~~pL~~k~eAFGw~V~ev-dG~-d~~~i~~a~~~~~~~~~rP~~IIa~Tvkg 243 (243)
T COG3959 169 KLDNLIAIVDRNKLQLDGETEEIMPKEPLADKWEAFGWEVIEV-DGH-DIEEIVEALEKAKGSKGRPTVIIAKTVKG 243 (243)
T ss_pred ccCcEEEEEecCCcccCCchhhccCcchhHHHHHhcCceEEEE-cCc-CHHHHHHHHHhhhccCCCCeEEEEecccC
Confidence 99999999999999999999865 4689999999999999999 999 99999999999986344999999999985
No 25
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=100.00 E-value=5e-55 Score=464.60 Aligned_cols=605 Identities=20% Similarity=0.220 Sum_probs=458.6
Q ss_pred CCCCCCcccHHHHHHHHHHHhhccCCCCCCCCCCCeEEecCcChhHHHHHHHHHcCCCCCCHHHHhhhhhcCC--CCCCC
Q 006816 12 AGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQYVCLHLAGFQSVQLEDLKRLCKMGS--RTPGH 89 (630)
Q Consensus 12 ~GH~g~~ls~~~~~~~L~~~~~~~d~~~~~~~~~Dr~v~s~gH~~~~~y~~~~l~G~~~~~~~~l~~~r~~~s--~~~g~ 89 (630)
+||++|.-|++.++.++|.+|+|- +++++ +.|++.+ +||++|++||.-+|.|+ +++|+|++|||..+ -++++
T Consensus 104 GGH~aSfaSsatlyev~fnhffr~-~~~~~--ggDlV~~-qgHaSPg~yArafLeGR--lseeqLdnFRqev~g~gl~SY 177 (887)
T COG2609 104 GGHIASFASSATLYEVGFNHFFRA-KSEKD--GGDLVFF-QGHASPGIYARAFLEGR--LTEEQLDNFRQEVDGKGLSSY 177 (887)
T ss_pred cchhhhhhhHHHHHHHHHHHHhcC-cCCCC--CCceEEE-ecCCCchHHHHHHHhcc--ccHHHHHHHHHhccCCCCCCC
Confidence 899999999999999999998873 22222 5788666 99999999999999999 99999999999765 23477
Q ss_pred CCCCCcC-cccccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEE
Q 006816 90 PENVVTE-GIEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLT 168 (630)
Q Consensus 90 p~~~~~~-~~~~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li 168 (630)
|.+...| .+.++|++||-|...|+-.|.-.||+..+.-++ .++.+||||+|||++.|+.+.+|+..|++++|+|++
T Consensus 178 Php~lmpdfwqFpTvSmGLGp~~aiyqArf~kYL~~RGl~~---~~~~~v~afLGDgEmDEpes~gAi~~A~re~LdNli 254 (887)
T COG2609 178 PHPKLMPDFWQFPTVSMGLGPIQAIYQARFLKYLEARGLKD---TSDQKVWAFLGDGEMDEPESRGAITEAAREKLDNLI 254 (887)
T ss_pred CCCcCCccccccCcccccccHHHHHHHHHHHHHHHhcCCcC---CCCCeEEEEecCcccCCchhhHHHHHHHHhcCCceE
Confidence 7765444 899999999999999999999999998764332 278999999999999999999999999999999999
Q ss_pred EEEECCCCccccccccc--ChhcHHHHHHhCCCeEEEEe-----------------------------------------
Q 006816 169 LIYDDNHNTIDGPTSLV--LSEDISARFKSLGWNTIMVE----------------------------------------- 205 (630)
Q Consensus 169 ~i~~~N~~~i~~~~~~~--~~~~~~~~~~a~G~~~~~v~----------------------------------------- 205 (630)
||+|.|.+++++++... ....+..+|++.||+++.|+
T Consensus 255 fVincNlQrLDgpVrgngkiiqelE~~FrgAGW~VikviWg~~wd~ll~kd~~gkL~~~m~e~~dgdyqt~kakdGayvR 334 (887)
T COG2609 255 FVINCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGRRWDELLAKDTGGKLRQLMNETVDGDYQTFKAKDGAYVR 334 (887)
T ss_pred EEEecchhhcCCcccCCchhHHHHHHHhccCCceEEEEEecccHHHHhcccCcchHHHHHHhcccchhhhhcccccHHHH
Confidence 99999999999998744 45678899999999999998
Q ss_pred ---------------------------CCCCCHHHHHHHHHHHHhcCCCcEEEEEeecccccCccc-CCC----CC---C
Q 006816 206 ---------------------------NIHDNLSSFKEALMAAANETKKPTFIRVKKMRERVNWVD-RDQ----FH---V 250 (630)
Q Consensus 206 ---------------------------dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~~~g~~~-~~~----~~---~ 250 (630)
.|| |+..+++|+++|.+..++|++|.++|+||. |... .++ |+ .
T Consensus 335 ehff~~~Pe~~aLVa~~tD~diw~L~rGGH-D~~ki~aA~~~A~~~kg~PtvilA~TIKGy-glg~~~eg~n~aHq~kkm 412 (887)
T COG2609 335 EHFFGRYPETAALVADMTDDDIWALNRGGH-DPEKVYAAFKKAQEHKGRPTVILAKTIKGY-GLGEAAEGKNIAHQVKKM 412 (887)
T ss_pred HHHhccChHHHHHHHhccHHHHHHHhcCCC-CHHHHHHHHHHHhcCCCCceEEEEeeeccc-cCchhhcccchhhhhhcC
Confidence 489 999999999999984459999999999998 7732 222 33 4
Q ss_pred ChHHHHHHHHhhhhchhHHHHHHH-HHHhhhhcCCchhHhHHH--HhcCCCCCCccc-----cCCC---C----CCCCCC
Q 006816 251 IPMVYREMQIQTDHGERLEKEWCS-KVYNYRSKYPHEGAELDL--LLNGGLLPGWEN-----ALPK---W----STSDPL 315 (630)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~p~~~~~-----~~~~---~----~~~~~~ 315 (630)
+.+.++.||.+..= ....++.++ .+....+..+|......+ .+.+-+|..-.. .+|. | +...+.
T Consensus 413 ~~~~l~~~Rdr~~i-pvsd~e~e~lpy~~~g~~s~E~~yl~~rr~al~g~~p~rr~~~t~~l~vP~l~~~~a~~~~~g~~ 491 (887)
T COG2609 413 TPDQLKEFRDRFGI-PVSDAELEELPYYHFGEDSPEYKYLHARRAALGGYLPARRPKFTPALPVPSLSDFQALLKGQGEE 491 (887)
T ss_pred CHHHHHHHHhhcCC-CCchhhhhcCCcCCCCCCcHHHHHHHHHHHhcCCCCchhcccCCCCccCCcHHHHHHHHhccCcc
Confidence 56667777765200 001111111 000011112222111111 223334432111 1221 1 122346
Q ss_pred chHHHHHHHHHHHHHHhC---CCeEEEecCCCCCcccc--cccccCcC----------------CCCCCCCCccccccch
Q 006816 316 DATRGYSEKCLNQLAKVL---PGLIGGSADLASSNKAY--LLGYHDFS----------------QPDSPWGRNIRYGVRE 374 (630)
Q Consensus 316 ~~~r~a~~~~L~~l~~~~---~~iv~~~aD~~~s~~~~--~~~~~~f~----------------~~~~~p~R~~~~gIaE 374 (630)
+||..+|...|.+++++. ++||-+.+|.+.+++.. |+..+.|+ .++.-.+++++.||+|
T Consensus 492 iSTtmAfvr~l~~llkdk~ig~riVpiipDearTfgmeg~f~q~GIy~~~GQ~y~p~d~~~~~~ykea~~GQiLqeGInE 571 (887)
T COG2609 492 ISTTMAFVRILNELLKDKEIGKRIVPIIPDEARTFGMEGLFRQIGIYNPNGQQYTPQDRDQVMYYKEAESGQILQEGINE 571 (887)
T ss_pred chhHHHHHHHHHHHHhccccCCccccccCchhhhccchhhhhhcccccCCCccCCccchhhhhhhhhCCCcchHHhhhcc
Confidence 899999999999999853 47999999998777653 33333331 0122348999999999
Q ss_pred HHHHH--HHHHHH--hcCCCCceEeeehHHH-HHhhHHHHHHhcccCCC-eEEEEecCCCCCCCCCCCCCChhhhHHhhc
Q 006816 375 HAMAG--ISNGVA--LHGGGLIPFAATFLIF-SDYMKNSIRLSALSHAG-VIYILTHDSIGLGEDGPTHQPVEQLAGLRA 448 (630)
Q Consensus 375 ~~~vg--~a~GlA--~~G~~~~pv~~~~~~F-~~~a~dqi~~~a~~~~p-v~~v~~~~g~~~g~~G~tHq~~~d~a~l~~ 448 (630)
.+.++ +|+|.+ ++|.+++||..-|++| .||..|-+..+|.|... ..+.+|..|.+....|..||...-.-+-..
T Consensus 572 ~ga~~sw~AagtSys~~~~pmiPfyi~YsmFgfqRigD~~waA~dq~ARgFLlgaTagrtTLngEGlqHedghS~l~~~~ 651 (887)
T COG2609 572 AGAFASWIAAGTSYSTHGEPMIPFYIYYSMFGFQRIGDLLWAAGDQDARGFLLGATAGRTTLNGEGLQHEDGHSHLQAMT 651 (887)
T ss_pred ccHHHHHHHHhcccccCCccceeeeeeechhhhhhHHHHHHHHHhhhhcceeEeecCCCceeCccccccccccchhhhhc
Confidence 99988 577774 5777799999999999 89999999999999999 666668778776556889997776656778
Q ss_pred CCCcEEEecCChHHHHHHHHHHHHcC------CCcEEEEEcCCCcc-cccCCCcccccccccEEEecCCCCCCCcEEEEE
Q 006816 449 VPRLLAFRPADGNETAGSYRVAIANR------DVPSVIALSRQKIA-ANLEGTSADEVERGGYIVSDNSSENKPEIILIG 521 (630)
Q Consensus 449 iP~l~v~~P~d~~e~~~~l~~a~~~~------~~P~~ir~~r~~~~-~~~~~~~~~~~~~G~~~~~~~~~~G~~dvtiva 521 (630)
+||+.-|-|+.+.|++-+++..++.. +.-.||++...+++ |..|......+..|.|.+......+...|.|++
T Consensus 652 ip~~~tYdPafayEvAVI~~~g~~rmy~~~qe~v~yYlt~~ne~~~qPamp~gae~gI~kG~Y~l~~~~~~~~~~vqll~ 731 (887)
T COG2609 652 IPNCISYDPAFAYEVAVIMQDGLRRMYGEGQENVFYYITLSNENYPQPAMPEGAEEGIIKGIYKLETPGGQGKAKVQLLG 731 (887)
T ss_pred CCCccccCchHHHHHHHHHHHHHHHHhccCcCCcEEEEEeccCcCCCCCCCCcchhhhhhceeEeecCCCCCCceEEEEe
Confidence 99999999999999999999998753 33578888777661 223433346788999998863111137899999
Q ss_pred eCchHHHHHHHHHHHHh-cCCceEEEEcccccccCccc----------------HHHHhccCCCCCeeEEEEecCCccc-
Q 006816 522 TGTELSLCEGTAKTLRQ-EGRRVRVVSLVCWRLFDRQP----------------AEYKEKVLPSRVVKRVSVEAGSSVG- 583 (630)
Q Consensus 522 ~G~~v~~a~~aa~~L~~-~gi~~~Vi~~~~i~pld~~~----------------~~~~~~v~~~~~~~~v~vEe~~~~g- 583 (630)
+|..+.+|++|++.|++ .|+.+.|++++|.+.|.++- +.|...+++...++ |++-|.....
T Consensus 732 SGai~~ea~~AaelL~~d~gv~adl~svtS~~eL~rdg~a~~R~n~lhP~~~~~v~yv~~~L~~~~p~-Va~tDy~~~~a 810 (887)
T COG2609 732 SGAILREALEAAELLAKDYGVEADLWSVTSFDELARDGQAAERWNLLHPTETPRVPYVAQVLNADGPV-VAVTDYMKLFA 810 (887)
T ss_pred cchhHHHHHHHHHHHhhccccccCeeecccHHHHhcchHHHHHHHhcCCCCCCCchHHHHHhccCCCe-EEechhhHhHH
Confidence 99999999999999987 79999999999987766542 34555666644566 8887776543
Q ss_pred -c-cccccCcceEEEeccCCCCCCHHHHHHHcCCChHHHHHHHHHhhh
Q 006816 584 -W-REYVGVEGKVIGVEEFGASGAYLDTFKKYGFTIDNVTKVARSLLS 629 (630)
Q Consensus 584 -~-~~~~~~~~~~~g~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l~ 629 (630)
| ..+....++.+|.|.|+.|++.+.|+++|.+|++.|+-++...|.
T Consensus 811 ~qir~~vp~~y~vLGtdgFGrSdsr~~Lr~~fevDa~~vv~Aal~~La 858 (887)
T COG2609 811 EQIRAVVPQRYRVLGTDGFGRSDSRENLRRFFEVDAYYVVVAALSALA 858 (887)
T ss_pred HHHhcccCCeeEEeccCCCCccCcHHHHHHHhccchHHHHHHHHHHHh
Confidence 1 345555677899999999999999999999999999999887663
No 26
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=100.00 E-value=1.7e-54 Score=452.21 Aligned_cols=293 Identities=12% Similarity=0.092 Sum_probs=243.9
Q ss_pred CchHHHHHHHHHHHHHHhCCCeEEEecCCCCCcccccccccCcCCCCCCCC-CccccccchHHHHHHHHHHHhcCCCCce
Q 006816 315 LDATRGYSEKCLNQLAKVLPGLIGGSADLASSNKAYLLGYHDFSQPDSPWG-RNIRYGVREHAMAGISNGVALHGGGLIP 393 (630)
Q Consensus 315 ~~~~r~a~~~~L~~l~~~~~~iv~~~aD~~~s~~~~~~~~~~f~~~~~~p~-R~~~~gIaE~~~vg~a~GlA~~G~~~~p 393 (630)
..++|++++++|.+++++||+++++++|++.+++. +..++.| + ++||+ ||||+||+||+|+|+|+|||+.| ++|
T Consensus 3 ~~~~~~a~~~~L~~~~~~dp~iv~l~~d~~~~~g~-~~~~~~f-~-~~fp~~R~~n~gIaEq~~vg~AaGlA~~G--~~p 77 (327)
T CHL00144 3 EVFLFEALREAIDEEMARDPRVFVIGEDVGHYGGS-YKVTKGL-H-EKYGDLRVLDTPIAENSFTGMAIGAAMTG--LRP 77 (327)
T ss_pred cchHHHHHHHHHHHHHhhCCCEEEEeCcccccCCc-hhHHHHH-H-HHCCCccEeeccccHHHHHHHHHHHHHCC--CEE
Confidence 36889999999999999999999999999754431 2234668 4 78998 99999999999999999999999 999
Q ss_pred Eeee-hHHHHHhhHHHHHHh-ccc--------CCCeEEEEecCCCCCCCCCCCC-CChhhhHHhhcCCCcEEEecCChHH
Q 006816 394 FAAT-FLIFSDYMKNSIRLS-ALS--------HAGVIYILTHDSIGLGEDGPTH-QPVEQLAGLRAVPRLLAFRPADGNE 462 (630)
Q Consensus 394 v~~~-~~~F~~~a~dqi~~~-a~~--------~~pv~~v~~~~g~~~g~~G~tH-q~~~d~a~l~~iP~l~v~~P~d~~e 462 (630)
|+++ |++|++|+||||++. |++ ++||+++ +.|...+.+|+|| |++| ++||+||||+|++|+|+.|
T Consensus 78 vv~~~~~~f~~ra~dQi~~~~a~~~~~~gg~~~~~vv~~--~~g~~~~~~G~tHs~~~e--a~~~~iPgl~V~~Psd~~d 153 (327)
T CHL00144 78 IVEGMNMGFLLLAFNQISNNAGMLHYTSGGNFTIPIVIR--GPGGVGRQLGAEHSQRLE--SYFQSVPGLQIVACSTPYN 153 (327)
T ss_pred EEEeehhhHHHHHHHHHHHHHHHHhhccCCCccCCEEEE--ecCCCCCCCCccccccHH--HHHhcCCCCEEEEeCCHHH
Confidence 9984 778889999999885 776 5666665 4666566799999 6775 9999999999999999999
Q ss_pred HHHHHHHHHHcCCCcEEEEEcCCCcc--cccCCCcccccccccEEEecCCCCCCCcEEEEEeCchHHHHHHHHHHHHhcC
Q 006816 463 TAGSYRVAIANRDVPSVIALSRQKIA--ANLEGTSADEVERGGYIVSDNSSENKPEIILIGTGTELSLCEGTAKTLRQEG 540 (630)
Q Consensus 463 ~~~~l~~a~~~~~~P~~ir~~r~~~~--~~~~~~~~~~~~~G~~~~~~~~~~G~~dvtiva~G~~v~~a~~aa~~L~~~g 540 (630)
++++++++++. ++|+|||++|...+ +.++. ..+.+++|++.+++ + | +|+|||+||+|+++|++|++.|+++|
T Consensus 154 ~~~~l~~a~~~-~~Pv~ire~~~l~~~~~~v~~-~~~~~~~Gk~~v~~--~-G-~ditiia~G~~v~~al~Aa~~L~~~G 227 (327)
T CHL00144 154 AKGLLKSAIRS-NNPVIFFEHVLLYNLKEEIPD-NEYLLPLEKAEVVR--P-G-NDITILTYSRMRHHVLQAVKVLVEKG 227 (327)
T ss_pred HHHHHHHHHhC-CCcEEEEEcHHhcCCCCCCCC-CCccccCCeeEEEE--c-C-CCEEEEEccHHHHHHHHHHHHHHhcC
Confidence 99999999987 89999995443220 12332 23467899988888 5 8 99999999999999999999999999
Q ss_pred CceEEEEcccccccCcccHHHHhccCCCCCeeEEEEecCCcccc-c---------c---cccCcceEEEe-ccCCC-CCC
Q 006816 541 RRVRVVSLVCWRLFDRQPAEYKEKVLPSRVVKRVSVEAGSSVGW-R---------E---YVGVEGKVIGV-EEFGA-SGA 605 (630)
Q Consensus 541 i~~~Vi~~~~i~pld~~~~~~~~~v~~~~~~~~v~vEe~~~~g~-~---------~---~~~~~~~~~g~-d~f~~-~g~ 605 (630)
|+++|||++|++|||++++. +++.+++ ++ ||+||+...|+ + + +++.+++++|+ |.|++ +|+
T Consensus 228 i~~~VId~~~ikPlD~~~i~--~~~~~t~-~v-v~vEE~~~~gGlG~~va~~l~e~~f~~~~~pv~rl~~~d~~~~~~~~ 303 (327)
T CHL00144 228 YDPEIIDLISLKPLDLGTIS--KSVKKTH-KV-LIVEECMKTGGIGAELIAQINEHLFDELDAPIVRLSSQDVPTPYNGP 303 (327)
T ss_pred CCEEEEecCcCCCCCHHHHH--HHHHhhC-cE-EEEECCCCCCCHHHHHHHHHHHhchhhcCCCeEEEccCCCcCCCCcc
Confidence 99999999999999999886 4666665 56 99999998764 3 1 13558899999 88988 566
Q ss_pred HHHHHHHcCCChHHHHHHHHHhhh
Q 006816 606 YLDTFKKYGFTIDNVTKVARSLLS 629 (630)
Q Consensus 606 ~~~l~~~~gl~~~~I~~~i~~~l~ 629 (630)
.++ .+|||+++|+++|+++++
T Consensus 304 ~~~---~~gl~~~~I~~~i~~~l~ 324 (327)
T CHL00144 304 LEE---ATVIQPAQIIEAVEQIIT 324 (327)
T ss_pred HHH---HhCCCHHHHHHHHHHHHh
Confidence 554 459999999999999885
No 27
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=100.00 E-value=1.5e-53 Score=449.00 Aligned_cols=303 Identities=17% Similarity=0.185 Sum_probs=247.2
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHhCCCeEEEecCCCCCcccccccccCcCCCCCCCCCccccccchHHHHHHHHHHHhc
Q 006816 308 KWSTSDPLDATRGYSEKCLNQLAKVLPGLIGGSADLASSNKAYLLGYHDFSQPDSPWGRNIRYGVREHAMAGISNGVALH 387 (630)
Q Consensus 308 ~~~~~~~~~~~r~a~~~~L~~l~~~~~~iv~~~aD~~~s~~~~~~~~~~f~~~~~~p~R~~~~gIaE~~~vg~a~GlA~~ 387 (630)
.|..+.++.++|++++++|.+++++||+++++++|++.+++ .+..+++| .++.+|+||||+|||||+|+|+|+|||+.
T Consensus 19 ~~~~~~~~~~~~~a~~~aL~e~~~~d~~iv~i~~D~~~~~g-~~~~~~~l-~~~~~P~R~~d~GIAEq~~vg~AaGlA~~ 96 (356)
T PLN02683 19 GYASAAKEMTVRDALNSALDEEMSADPKVFIMGEEVGEYQG-AYKITKGL-LQKYGPDRVLDTPITEAGFTGIGVGAAYA 96 (356)
T ss_pred ccCccccccHHHHHHHHHHHHHHhhCcCEEEEccccccccC-ccchhhhH-HHHhCCCcEEECchhHHHHHHHHHHHHHC
Confidence 34344566899999999999999999999999999976554 23333445 33334999999999999999999999999
Q ss_pred CCCCceEeee-hHHHHHhhHHHHHHh-cccC--------CCeEEEEecCCCCCCCCCCCCCChhhhHHhhcCCCcEEEec
Q 006816 388 GGGLIPFAAT-FLIFSDYMKNSIRLS-ALSH--------AGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAVPRLLAFRP 457 (630)
Q Consensus 388 G~~~~pv~~~-~~~F~~~a~dqi~~~-a~~~--------~pv~~v~~~~g~~~g~~G~tHq~~~d~a~l~~iP~l~v~~P 457 (630)
| ++||+++ |++|++|+||||++. |+++ +||+|++.+ |..+| +|+|||..+ +++||+||||+|++|
T Consensus 97 G--~~P~v~~~~~~f~~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~-G~~~g-~G~tH~~~~-~a~lr~iPnl~V~~P 171 (356)
T PLN02683 97 G--LKPVVEFMTFNFSMQAIDHIINSAAKTNYMSAGQISVPIVFRGPN-GAAAG-VGAQHSQCF-AAWYSSVPGLKVLAP 171 (356)
T ss_pred C--CEEEEEEehhhHHHHHHHHHHHHHHHhccccCCCccCCEEEEEeC-CCCCC-CCCccccCH-HHHHhcCCCCEEEEe
Confidence 9 9999987 588899999999885 8877 999999854 66677 599998777 699999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCcEEEEEcCCCc---ccccCC--CcccccccccEEEecCCCCCCCcEEEEEeCchHHHHHHH
Q 006816 458 ADGNETAGSYRVAIANRDVPSVIALSRQKI---AANLEG--TSADEVERGGYIVSDNSSENKPEIILIGTGTELSLCEGT 532 (630)
Q Consensus 458 ~d~~e~~~~l~~a~~~~~~P~~ir~~r~~~---~~~~~~--~~~~~~~~G~~~~~~~~~~G~~dvtiva~G~~v~~a~~a 532 (630)
+|+.|++.++++++++ ++|+|||+++... ++.... ...+.+++|++++++ + | +|+||||+|+|+++|++|
T Consensus 172 ad~~e~~~~l~~a~~~-~gPv~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~v~r--~-G-~dvtIia~G~~v~~Al~A 246 (356)
T PLN02683 172 YSSEDARGLLKAAIRD-PDPVVFLENELLYGESFPVSAEVLDSSFVLPIGKAKIER--E-G-KDVTIVAFSKMVGYALKA 246 (356)
T ss_pred CCHHHHHHHHHHHHhC-CCcEEEEEehhhccCCCCCCCCCCCccccccCCeeEEEE--c-C-CCEEEEEccHHHHHHHHH
Confidence 9999999999999987 8999999643221 021111 113457789999888 5 7 999999999999999999
Q ss_pred HHHHHhcCCceEEEEcccccccCcccHHHHhccCCCCCeeEEEEecCCcccc-c---------c---cccCcceEEEe-c
Q 006816 533 AKTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLPSRVVKRVSVEAGSSVGW-R---------E---YVGVEGKVIGV-E 598 (630)
Q Consensus 533 a~~L~~~gi~~~Vi~~~~i~pld~~~~~~~~~v~~~~~~~~v~vEe~~~~g~-~---------~---~~~~~~~~~g~-d 598 (630)
++.|+++||+++|||++|++|||.+++. +++.+++ ++ ||+||+...|+ + . +++.+++++|+ |
T Consensus 247 a~~L~~~GI~v~VId~~~ikPlD~~~l~--~~~~~t~-~v-vtvEE~~~~GGlGs~Va~~l~e~~f~~~~~~v~rlg~~d 322 (356)
T PLN02683 247 AEILAKEGISAEVINLRSIRPLDRDTIN--ASVRKTN-RL-VTVEEGWPQHGVGAEICASVVEESFDYLDAPVERIAGAD 322 (356)
T ss_pred HHHHHhcCCCEEEEECCCCCccCHHHHH--HHHhhcC-eE-EEEeCCCcCCCHHHHHHHHHHHhchhccCCCeEEeccCC
Confidence 9999999999999999999999999886 4566665 56 99999998764 3 1 13457899999 6
Q ss_pred cCCCCCCHHHHHHHcCC-ChHHHHHHHHHhhh
Q 006816 599 EFGASGAYLDTFKKYGF-TIDNVTKVARSLLS 629 (630)
Q Consensus 599 ~f~~~g~~~~l~~~~gl-~~~~I~~~i~~~l~ 629 (630)
.+++ ...+++++++ ++++|+++|+++++
T Consensus 323 ~~~p---~~~~le~~~~p~~~~i~~a~~~~~~ 351 (356)
T PLN02683 323 VPMP---YAANLERLALPQVEDIVRAAKRACY 351 (356)
T ss_pred cCCC---ccHHHHHhhCCCHHHHHHHHHHHHH
Confidence 6544 4556666666 99999999999985
No 28
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=100.00 E-value=2.1e-53 Score=459.77 Aligned_cols=291 Identities=16% Similarity=0.183 Sum_probs=249.7
Q ss_pred CchHHHHHHHHHHHHHHhCCCeEEEecCCCCCcccccccccCcCCCCCC-CCCccccccchHHHHHHHHHHHhcCCCCce
Q 006816 315 LDATRGYSEKCLNQLAKVLPGLIGGSADLASSNKAYLLGYHDFSQPDSP-WGRNIRYGVREHAMAGISNGVALHGGGLIP 393 (630)
Q Consensus 315 ~~~~r~a~~~~L~~l~~~~~~iv~~~aD~~~s~~~~~~~~~~f~~~~~~-p~R~~~~gIaE~~~vg~a~GlA~~G~~~~p 393 (630)
.+++|++++++|.+++++||+++++++|++.+.+ .++.+++| . ++| |+||||+||+||+|+|+|+|||+.| ++|
T Consensus 141 ~~~~r~a~~~al~~~~~~d~~vv~i~~Dv~~~~g-a~~~t~~l-~-~~fgp~R~id~gIaEq~~vg~AaGlA~~G--~rP 215 (464)
T PRK11892 141 TMTVREALRDAMAEEMRRDEDVFVMGEEVAEYQG-AYKVTQGL-L-QEFGARRVIDTPITEHGFAGIGVGAAFAG--LKP 215 (464)
T ss_pred chHHHHHHHHHHHHHHhhCcCEEEEeCCccccCC-ccccchHH-H-HHhCccceeecCccHHHHHHHHHHHHhCC--CEE
Confidence 4689999999999999999999999999976554 24445567 4 688 9999999999999999999999999 999
Q ss_pred Eeee-hHHHHHhhHHHHHHh-c--------ccCCCeEEEEecCCCCCCCCCCCCCChhhhHHhhcCCCcEEEecCChHHH
Q 006816 394 FAAT-FLIFSDYMKNSIRLS-A--------LSHAGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAVPRLLAFRPADGNET 463 (630)
Q Consensus 394 v~~~-~~~F~~~a~dqi~~~-a--------~~~~pv~~v~~~~g~~~g~~G~tHq~~~d~a~l~~iP~l~v~~P~d~~e~ 463 (630)
|+++ +++|++|+||||++. | ++++||+|++.+.+. .+ .|+ ||+++|+++||+||||+|++|+|+.|+
T Consensus 216 iv~~~~~~f~~ra~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~-~~-~G~-hhs~~d~a~~~~iPgl~V~~P~d~~d~ 292 (464)
T PRK11892 216 IVEFMTFNFAMQAIDQIINSAAKTLYMSGGQMGCPIVFRGPNGAA-AR-VAA-QHSQDYAAWYSHIPGLKVVAPYSAADA 292 (464)
T ss_pred EEEEehHHHHHHHHHHHHHHHhHHhhhcCCccCCCEEEEecCCCC-CC-CCC-ccccCHHHHHhhCCCCEEEEeCCHHHH
Confidence 9987 578889999999884 7 899999999854433 33 677 999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCcEEE-----EEcCC-CcccccCCCcccccccccEEEecCCCCCCCcEEEEEeCchHHHHHHHHHHHH
Q 006816 464 AGSYRVAIANRDVPSVI-----ALSRQ-KIAANLEGTSADEVERGGYIVSDNSSENKPEIILIGTGTELSLCEGTAKTLR 537 (630)
Q Consensus 464 ~~~l~~a~~~~~~P~~i-----r~~r~-~~~~~~~~~~~~~~~~G~~~~~~~~~~G~~dvtiva~G~~v~~a~~aa~~L~ 537 (630)
+++|++++++ ++|+|| |++|. .+ |.+ ..+.+++|++++++ + | +|+|||+||.+++.|++|++.|+
T Consensus 293 ~~ll~~ai~~-~~Pv~ile~~~ry~~~~~v-p~~---~~~~~~~Gka~v~r--~-G-~DvtIva~G~~v~~Al~Aa~~L~ 363 (464)
T PRK11892 293 KGLLKAAIRD-PNPVIFLENEILYGQSFDV-PKL---DDFVLPIGKARIHR--E-G-KDVTIVSFSIGMTYALKAAEELA 363 (464)
T ss_pred HHHHHHHhhC-CCcEEEEechhhcCCCCCC-CCc---CCccccCceEEEEE--c-C-CCEEEEEccHHHHHHHHHHHHHH
Confidence 9999999987 899999 56665 23 322 23567899999888 5 8 99999999999999999999999
Q ss_pred hcCCceEEEEcccccccCcccHHHHhccCCCCCeeEEEEecCCcccc-c------------ccccCcceEEEe-ccCCCC
Q 006816 538 QEGRRVRVVSLVCWRLFDRQPAEYKEKVLPSRVVKRVSVEAGSSVGW-R------------EYVGVEGKVIGV-EEFGAS 603 (630)
Q Consensus 538 ~~gi~~~Vi~~~~i~pld~~~~~~~~~v~~~~~~~~v~vEe~~~~g~-~------------~~~~~~~~~~g~-d~f~~~ 603 (630)
++||+++|||++||+|||.+++. +++.+++ ++ ||+||++..|+ + .+++.+++++|+ |.|++
T Consensus 364 ~~GI~~~VIdl~tlkPlD~~~i~--~sv~kt~-~v-vtvEE~~~~gGlG~~va~~l~e~~f~~l~~pv~ri~~~d~~~~- 438 (464)
T PRK11892 364 KEGIDAEVIDLRTIRPMDTETIV--ESVKKTN-RL-VTVEEGWPQSGVGAEIAARVMEQAFDYLDAPVLRVTGKDVPMP- 438 (464)
T ss_pred hcCCCEEEEECCCCCcCCHHHHH--HHHHhcC-eE-EEEeCCCcCCcHHHHHHHHHHHhCccccCCCeEEeccCCccCC-
Confidence 99999999999999999999887 5677776 56 99999998764 3 124568899999 88875
Q ss_pred CCHHHHHHHcCC-ChHHHHHHHHHhhh
Q 006816 604 GAYLDTFKKYGF-TIDNVTKVARSLLS 629 (630)
Q Consensus 604 g~~~~l~~~~gl-~~~~I~~~i~~~l~ 629 (630)
+..++++++| ++++|+++|++++-
T Consensus 439 --~~~~le~~~l~~~~~Iv~av~~~~~ 463 (464)
T PRK11892 439 --YAANLEKLALPSVAEVVEAVKAVCY 463 (464)
T ss_pred --cHHHHHHhcCCCHHHHHHHHHHHhh
Confidence 6789999998 99999999999864
No 29
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=100.00 E-value=2e-53 Score=444.96 Aligned_cols=295 Identities=16% Similarity=0.158 Sum_probs=246.8
Q ss_pred CchHHHHHHHHHHHHHHhCCCeEEEecCCCCCcccccccccCcCCCCCC-CCCccccccchHHHHHHHHHHHhcCCCCce
Q 006816 315 LDATRGYSEKCLNQLAKVLPGLIGGSADLASSNKAYLLGYHDFSQPDSP-WGRNIRYGVREHAMAGISNGVALHGGGLIP 393 (630)
Q Consensus 315 ~~~~r~a~~~~L~~l~~~~~~iv~~~aD~~~s~~~~~~~~~~f~~~~~~-p~R~~~~gIaE~~~vg~a~GlA~~G~~~~p 393 (630)
+.++|++++++|.+++++||+++++++|++.+++ .|+.++.| + ++| |+||||+|||||+|+|+|+|||+.| ++|
T Consensus 3 ~~~~~~a~~~~L~~~~~~d~~iv~l~~d~~~~~g-~~~~~~~~-~-~~fgp~R~~d~gIaE~~~vg~AaGlA~~G--~~P 77 (327)
T PRK09212 3 QLTVREALRDAMQEEMERDPKVFLMGEEVGEYQG-AYKVTQGL-L-EQFGPKRVIDTPITEHGFAGLAVGAAFAG--LRP 77 (327)
T ss_pred cchHHHHHHHHHHHHHHhCCCEEEEcCcccccCC-cchhhHHH-H-HHhCCCceeecchhHHHHHHHHHHHHHcC--Cee
Confidence 4589999999999999999999999999976554 23334568 4 689 9999999999999999999999999 999
Q ss_pred EeeehH-HHHHhhHHHHHHh-cccC------CCeEEEEecCCCCCCCCCCCC-CChhhhHHhhcCCCcEEEecCChHHHH
Q 006816 394 FAATFL-IFSDYMKNSIRLS-ALSH------AGVIYILTHDSIGLGEDGPTH-QPVEQLAGLRAVPRLLAFRPADGNETA 464 (630)
Q Consensus 394 v~~~~~-~F~~~a~dqi~~~-a~~~------~pv~~v~~~~g~~~g~~G~tH-q~~~d~a~l~~iP~l~v~~P~d~~e~~ 464 (630)
|+++|+ +|++|+||||++. |+++ +|+.+++++++..++.+|+|| |+. + ++||+||||+|++|+|+.|++
T Consensus 78 iv~~~~~~f~~ra~dQi~~d~a~~~~~~~~~~~v~vv~~~~~g~~~~~G~tH~~~~-e-a~~r~iP~l~V~~P~d~~e~~ 155 (327)
T PRK09212 78 IVEFMTFNFSMQAIDQIVNSAAKTNYMSGGQLKCPIVFRGPNGAAARVAAQHSQCY-A-AWYSHIPGLKVVAPYFAADCK 155 (327)
T ss_pred EEEeehhhHHHHHHHHHHHHHHHHhhccCCCcCccEEEEeCCCCCCCCCcccccCH-H-HHHhcCCCCEEEeeCCHHHHH
Confidence 999876 7889999999884 7774 455444456776788899999 555 4 999999999999999999999
Q ss_pred HHHHHHHHcCCCcEEEEEcCCCcccc---cCCCcccccccccEEEecCCCCCCCcEEEEEeCchHHHHHHHHHHHHhcCC
Q 006816 465 GSYRVAIANRDVPSVIALSRQKIAAN---LEGTSADEVERGGYIVSDNSSENKPEIILIGTGTELSLCEGTAKTLRQEGR 541 (630)
Q Consensus 465 ~~l~~a~~~~~~P~~ir~~r~~~~~~---~~~~~~~~~~~G~~~~~~~~~~G~~dvtiva~G~~v~~a~~aa~~L~~~gi 541 (630)
.+++++++. ++|+|||++|..+ +. ++. ..+.+++|++++++ + | .|++||+||+++..|++|++.|+++||
T Consensus 156 ~~l~~a~~~-~~Pv~i~~~~~~~-~~~~~~~~-~~~~~~~Gk~~vl~--~-G-~di~iva~G~~~~~a~eAa~~L~~~Gi 228 (327)
T PRK09212 156 GLLKTAIRD-PNPVIFLENEILY-GHSHEVPE-EEESIPIGKAAILR--E-G-SDVTIVTFSIQVKLALEAAELLEKEGI 228 (327)
T ss_pred HHHHHHHhC-CCcEEEEEchhhc-CCCCCCCC-CCccccCCeeEEEE--e-C-CCEEEEEccHHHHHHHHHHHHHHhcCC
Confidence 999999987 9999998876544 32 222 23468899998887 5 7 999999999999999999999999999
Q ss_pred ceEEEEcccccccCcccHHHHhccCCCCCeeEEEEecCCcccc-c----cc--------ccCcceEEEe-ccCCCCCCHH
Q 006816 542 RVRVVSLVCWRLFDRQPAEYKEKVLPSRVVKRVSVEAGSSVGW-R----EY--------VGVEGKVIGV-EEFGASGAYL 607 (630)
Q Consensus 542 ~~~Vi~~~~i~pld~~~~~~~~~v~~~~~~~~v~vEe~~~~g~-~----~~--------~~~~~~~~g~-d~f~~~g~~~ 607 (630)
+++|||+++++|||.+++. +.+.+++ ++ |++||+...|+ + ++ ...++++++. |.|+++|
T Consensus 229 ~v~vi~~~~l~Pld~~~i~--~~~~~~~-~v-v~vEe~~~~gGlg~~la~~l~~~~~~~~~~~i~r~~~~~~~~~~~--- 301 (327)
T PRK09212 229 SVEVIDLRTLRPLDTETII--ESVKKTN-RL-VVVEEGWPFAGVGAEIAALIMKEAFDYLDAPVERVTGKDVPLPYA--- 301 (327)
T ss_pred cEEEEEEecCCCCCHHHHH--HHHHhCC-eE-EEEcCCCCCCCHHHHHHHHHHHhCccccCCCeEEEcCCCccCCch---
Confidence 9999999999999999776 3454554 55 99999998764 2 11 2347789999 8888765
Q ss_pred HHHHHcCC-ChHHHHHHHHHhhhC
Q 006816 608 DTFKKYGF-TIDNVTKVARSLLSE 630 (630)
Q Consensus 608 ~l~~~~gl-~~~~I~~~i~~~l~~ 630 (630)
++++++++ ++++|+++|++++++
T Consensus 302 ~~le~~~l~~~~~I~~~i~~~~~~ 325 (327)
T PRK09212 302 ANLEKLALPSEEDIIEAVKKVCYR 325 (327)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhh
Confidence 79999998 999999999998864
No 30
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=100.00 E-value=2.1e-51 Score=432.63 Aligned_cols=295 Identities=20% Similarity=0.199 Sum_probs=245.4
Q ss_pred CCchHHHHHHHHHHHHHHhCCCeEEEecCCCCCcccccccccCcCCCCCC-CCCccccccchHHHHHHHHHHHhcCCCCc
Q 006816 314 PLDATRGYSEKCLNQLAKVLPGLIGGSADLASSNKAYLLGYHDFSQPDSP-WGRNIRYGVREHAMAGISNGVALHGGGLI 392 (630)
Q Consensus 314 ~~~~~r~a~~~~L~~l~~~~~~iv~~~aD~~~s~~~~~~~~~~f~~~~~~-p~R~~~~gIaE~~~vg~a~GlA~~G~~~~ 392 (630)
+++++|++++++|.+++++||+++++++|++..++ .+..++.| + ++| |+||||+||+||+|+|+|+|||+.| ++
T Consensus 33 ~~~~~~~~~~~~L~~~~~~d~~iv~l~~D~~~~G~-~~~~~~~f-~-~~fgP~R~id~GIaEq~~vg~AaGlA~~G--~~ 107 (355)
T PTZ00182 33 VKMNVREAINSALDEELARDPKVFVLGEDVAQYGG-VYKCTKGL-L-DKYGPDRVFDTPITEQGFAGFAIGAAMNG--LR 107 (355)
T ss_pred cchHHHHHHHHHHHHHHhhCCCEEEEeCCccccCC-chhhhHHH-H-HHhCCCceeecCccHHHHHHHHHHHHhCC--CE
Confidence 45789999999999999999999999999963221 12234568 4 789 9999999999999999999999999 99
Q ss_pred eEeee-hHHHHHhhHHHHHHh-cccC------CCeEEEEecCCCCCCCCCCCC-CChhhhHHhhcCCCcEEEecCChHHH
Q 006816 393 PFAAT-FLIFSDYMKNSIRLS-ALSH------AGVIYILTHDSIGLGEDGPTH-QPVEQLAGLRAVPRLLAFRPADGNET 463 (630)
Q Consensus 393 pv~~~-~~~F~~~a~dqi~~~-a~~~------~pv~~v~~~~g~~~g~~G~tH-q~~~d~a~l~~iP~l~v~~P~d~~e~ 463 (630)
||+++ |++|++|++|||++. |+++ +|+.+++++.+.++|.+|+|| |+.+ ++||+||||+|++|+|+.|+
T Consensus 108 Pvv~~~fa~Fl~ra~dQi~~d~a~~~~~~~g~~~v~vv~~~~~g~~g~~G~tHs~~~e--a~lr~iPn~~V~~Psd~~e~ 185 (355)
T PTZ00182 108 PIAEFMFADFIFPAFDQIVNEAAKYRYMSGGQFDCPIVIRGPNGAVGHGGAYHSQSFE--AYFAHVPGLKVVAPSDPEDA 185 (355)
T ss_pred EEEEechhhHHHHHHHHHHHHHHHhhcccCCCccCCEEEEeCCCCCCCCCCcccchHH--HHHhcCCCCEEEeeCCHHHH
Confidence 99997 899999999999984 7753 455555556777789999999 6554 99999999999999999999
Q ss_pred HHHHHHHHHcCCCcEEEEEcCC----CcccccCCCcccccccccEEEecCCCCCCCcEEEEEeCchHHHHHHHHHHHHhc
Q 006816 464 AGSYRVAIANRDVPSVIALSRQ----KIAANLEGTSADEVERGGYIVSDNSSENKPEIILIGTGTELSLCEGTAKTLRQE 539 (630)
Q Consensus 464 ~~~l~~a~~~~~~P~~ir~~r~----~~~~~~~~~~~~~~~~G~~~~~~~~~~G~~dvtiva~G~~v~~a~~aa~~L~~~ 539 (630)
+.++++++++ ++|+||++||. .. +..+. ..+.+++|++++++ + | .|++||+||+++..|++|++.|+++
T Consensus 186 ~~~l~~a~~~-~~P~~i~~p~~l~r~~~-~~~~~-~~~~~~~Gk~~vl~--~-G-~di~Iia~Gs~~~~aleAa~~L~~~ 258 (355)
T PTZ00182 186 KGLLKAAIRD-PNPVVFFEPKLLYRESV-EVVPE-ADYTLPLGKAKVVR--E-G-KDVTIVGYGSQVHVALKAAEELAKE 258 (355)
T ss_pred HHHHHHHHhC-CCcEEEEeehHHhCCCC-CCCCc-ccccccCCcceEec--C-C-CCEEEEEeCHHHHHHHHHHHHHHhC
Confidence 9999999997 89999987764 22 22222 23457889988887 5 7 9999999999999999999999999
Q ss_pred CCceEEEEcccccccCcccHHHHhccCCCCCeeEEEEecCCcccc-c----c--------cccCcceEEEe-ccCCCCCC
Q 006816 540 GRRVRVVSLVCWRLFDRQPAEYKEKVLPSRVVKRVSVEAGSSVGW-R----E--------YVGVEGKVIGV-EEFGASGA 605 (630)
Q Consensus 540 gi~~~Vi~~~~i~pld~~~~~~~~~v~~~~~~~~v~vEe~~~~g~-~----~--------~~~~~~~~~g~-d~f~~~g~ 605 (630)
||+++|||+++++|||.+.+. +.+.+++ ++ |++||+...|+ + + ++..+++++|+ |.|+++..
T Consensus 259 Gi~v~vI~~~~l~Pld~e~i~--~~~~~~~-~I-vvvEE~~~~GGlG~~Va~~l~e~~~~~l~~pv~ri~~~d~~~p~~~ 334 (355)
T PTZ00182 259 GISCEVIDLRSLRPWDRETIV--KSVKKTG-RC-VIVHEAPPTCGIGAEIAAQIMEDCFLYLEAPIKRVCGADTPFPYAK 334 (355)
T ss_pred CCcEEEEEEeeCCCCCHHHHH--HHHhcCC-EE-EEEEeCCCCCCHHHHHHHHHHHhhhhhcCCCeEEeCCCCccCCCCh
Confidence 999999999999999999775 3444444 55 99999998664 3 1 12458899999 88987654
Q ss_pred HHHHHHHcCCChHHHHHHHHHhh
Q 006816 606 YLDTFKKYGFTIDNVTKVARSLL 628 (630)
Q Consensus 606 ~~~l~~~~gl~~~~I~~~i~~~l 628 (630)
.+++.+.+++++|+++|++++
T Consensus 335 --~le~~~~~~~~~i~~~~~~~~ 355 (355)
T PTZ00182 335 --NLEPAYLPDKEKVVEAAKRVL 355 (355)
T ss_pred --HHHHHhCCCHHHHHHHHHHhC
Confidence 388899999999999999874
No 31
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=100.00 E-value=3.2e-51 Score=424.73 Aligned_cols=230 Identities=24% Similarity=0.243 Sum_probs=213.9
Q ss_pred hHHHHHhhcCC------CCCCCcccHHHHHHHHHHHhhccCCCCCCCCCCCeEEecCcChhHHHHHHHHHcCCCCCCHHH
Q 006816 2 LIVDAVQNAKA------GHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQYVCLHLAGFQSVQLED 75 (630)
Q Consensus 2 ~~~~~~~~~~~------GH~g~~ls~~~~~~~L~~~~~~~d~~~~~~~~~Dr~v~s~gH~~~~~y~~~~l~G~~~~~~~~ 75 (630)
++++|+.++++ ||+|++||++||+++||..+|++|| .|++||| |+|+||++|++|++++++|+ ++.++
T Consensus 14 ~i~~mv~~a~s~~~~~gGH~G~slS~adI~~aLy~~~l~~~p---~~~~RDR-vlSkGHas~~lYA~L~l~G~--~~~ed 87 (386)
T cd02017 14 NAMAMVHRANKKDLGIGGHIATFASAATLYEVGFNHFFRARG---EGGGGDL-VYFQGHASPGIYARAFLEGR--LTEEQ 87 (386)
T ss_pred HHHHHHHHcCCCCcccCCCCCcchhHHHHHHHHHHHhcCCCC---CCCCCCE-EEeCCcccHHHHHHHHHcCC--CCHHH
Confidence 68999999998 9999999999999999998999987 5999999 88999999999999999999 99999
Q ss_pred HhhhhhcCC--CCCCCCCCCCcC-cccccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhH
Q 006816 76 LKRLCKMGS--RTPGHPENVVTE-GIEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGIS 152 (630)
Q Consensus 76 l~~~r~~~s--~~~g~p~~~~~~-~~~~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~ 152 (630)
|++|||.+| .+++||++...| +++++||+||+|+++|+|+|+|.|++.+++++.+ .+++|||++|||+++||++
T Consensus 88 L~~fr~~gs~p~l~g~p~~~~~~~gve~sTGSLGqGLs~AvGmAla~r~l~a~~~~~~---~~~rvyvllGDGEl~EG~v 164 (386)
T cd02017 88 LDNFRQEVGGGGLSSYPHPWLMPDFWEFPTVSMGLGPIQAIYQARFNRYLEDRGLKDT---SDQKVWAFLGDGEMDEPES 164 (386)
T ss_pred HHhhccCCCCCCCCCCCCCCCCCCCeeeCCchHHHHHHHHHHHHHHHHHHHhhhccCC---CCCeEEEEEcccccccHHH
Confidence 999999999 578999865556 5999999999999999999999999887776643 5789999999999999999
Q ss_pred HHHHHHhHHcCCCcEEEEEECCCCcccccccc--cChhcHHHHHHhCCCeEEEEeC------------------------
Q 006816 153 HEAAALAAHWKLNKLTLIYDDNHNTIDGPTSL--VLSEDISARFKSLGWNTIMVEN------------------------ 206 (630)
Q Consensus 153 ~eal~~a~~~~L~~li~i~~~N~~~i~~~~~~--~~~~~~~~~~~a~G~~~~~v~d------------------------ 206 (630)
|||+++|++++|+|||+|+|+|++++++++.. ...+++.++|++|||++++| |
T Consensus 165 wEA~~~Ag~~kL~NLivIvD~N~~qidG~t~~v~~~~e~l~~kf~AfGW~vi~V-~~g~~~~~~f~~~gg~~l~~~~~~~ 243 (386)
T cd02017 165 LGAIGLAAREKLDNLIFVVNCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKV-IWGSKWDELLAKDGGGALRQRMEET 243 (386)
T ss_pred HHHHHHHHHhCCCCEEEEEECCCCccCCcccccccCchhHHHHHHhcCCEEEEE-ecCCcchhhhccCcchHHHHHHHhc
Confidence 99999999999999999999999999999987 46899999999999999998 7
Q ss_pred ---------------------------------------------CCCCHHHHHHHHHHHHhcCCCcEEEEEeecccccC
Q 006816 207 ---------------------------------------------IHDNLSSFKEALMAAANETKKPTFIRVKKMRERVN 241 (630)
Q Consensus 207 ---------------------------------------------G~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~~~g 241 (630)
|| |+++|.+||++++...++|++|+++|+||+ |
T Consensus 244 ~~~~~~~l~~~~~~~~r~~l~~~~~~~~~~~~~~~d~~~~~~~~gGh-D~~~i~~A~~~a~~~~~kPt~Iia~TikG~-G 321 (386)
T cd02017 244 VDGDYQTLKAKDGAYVREHFFGKYPELKALVTDLSDEDLWALNRGGH-DPRKVYAAYKKAVEHKGKPTVILAKTIKGY-G 321 (386)
T ss_pred ccHHHHHHhhcchHHHHHHhccccHHHHHHhhcccHHhhhhhccCCC-CHHHHHHHHHHHHhCCCCCeEEEEeCeecC-C
Confidence 99 999999999999854578999999999999 9
Q ss_pred cc
Q 006816 242 WV 243 (630)
Q Consensus 242 ~~ 243 (630)
.+
T Consensus 322 ~~ 323 (386)
T cd02017 322 LG 323 (386)
T ss_pred CC
Confidence 85
No 32
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
Probab=100.00 E-value=1e-50 Score=399.99 Aligned_cols=295 Identities=16% Similarity=0.156 Sum_probs=248.5
Q ss_pred chHHHHHHHHHHHHHHhCCCeEEEecCCCCCcccccccccCcCCCCCC-CCCccccccchHHHHHHHHHHHhcCCCCceE
Q 006816 316 DATRGYSEKCLNQLAKVLPGLIGGSADLASSNKAYLLGYHDFSQPDSP-WGRNIRYGVREHAMAGISNGVALHGGGLIPF 394 (630)
Q Consensus 316 ~~~r~a~~~~L~~l~~~~~~iv~~~aD~~~s~~~~~~~~~~f~~~~~~-p~R~~~~gIaE~~~vg~a~GlA~~G~~~~pv 394 (630)
+++++|++++|.+.|++|++++++++|++..++ .|+.++++ + ++| ++|+|||||+|.+++|+|.|+|+.| +|||
T Consensus 2 ~~~~eAi~~Am~~eM~rD~~V~v~GEDVg~~GG-vf~~T~GL-~-~kfG~~RV~DTPiaE~gi~G~avGaA~~G--lrPi 76 (324)
T COG0022 2 MTMIEAINEAMDEEMERDERVVVLGEDVGVYGG-VFRVTKGL-Q-EKFGEERVIDTPIAESGIAGIAVGAALTG--LRPI 76 (324)
T ss_pred ccHHHHHHHHHHHHHhcCCCEEEEcccccccCC-hhhhchhH-H-HHhCccceecCccchhhhHHHHHHHHHcC--Ccce
Confidence 578999999999999999999999999965443 56677778 5 688 5699999999999999999999999 9999
Q ss_pred eee-hHHHHHhhHHHHHHh-c--------ccCCCeEEEEecCCCCCCCCCCCCCChhhhHHhhcCCCcEEEecCChHHHH
Q 006816 395 AAT-FLIFSDYMKNSIRLS-A--------LSHAGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAVPRLLAFRPADGNETA 464 (630)
Q Consensus 395 ~~~-~~~F~~~a~dqi~~~-a--------~~~~pv~~v~~~~g~~~g~~G~tHq~~~d~a~l~~iP~l~v~~P~d~~e~~ 464 (630)
+++ |.+|+.-++|||.+. + ...+|+++++ +.|.+.+ ++.|||..-.++|.++||++|++|++++|++
T Consensus 77 vEiqf~dF~~~a~dqi~n~aAk~ryrsgG~~~~PiviR~-p~G~g~~--~~~~HSqs~ea~f~h~PGlKVV~PStpyDAK 153 (324)
T COG0022 77 VEIQFADFIYPAFDQIVNQAAKIRYRSGGQFTVPIVIRT-PNGGGIG--GGAQHSQSLEALFAHIPGLKVVMPSTPYDAK 153 (324)
T ss_pred EEEEecchhHHHHHHHHHHHHHHhhhcCCceeCCEEEEc-CCCCCCC--chhhccCCHHHHHhcCCCceEEecCChHHHH
Confidence 985 999999999999763 2 2479999995 5665554 5556666666999999999999999999999
Q ss_pred HHHHHHHHcCCCcEEEEEcCCCcc---cccCCCcccccccccEEEecCCCCCCCcEEEEEeCchHHHHHHHHHHHHhcCC
Q 006816 465 GSYRVAIANRDVPSVIALSRQKIA---ANLEGTSADEVERGGYIVSDNSSENKPEIILIGTGTELSLCEGTAKTLRQEGR 541 (630)
Q Consensus 465 ~~l~~a~~~~~~P~~ir~~r~~~~---~~~~~~~~~~~~~G~~~~~~~~~~G~~dvtiva~G~~v~~a~~aa~~L~~~gi 541 (630)
++|+.|+++ ++||++..++..+. ..+| +..+.+|+|++.+++ + | +|+||||||.||+.+++||+.|.++||
T Consensus 154 GLL~aAIrd-~dPViflE~k~lY~~~~~eVP-~~~Y~iPlGkA~i~r--e-G-~DvTivtyg~mv~~al~AAe~l~~~Gi 227 (324)
T COG0022 154 GLLKAAIRD-PDPVIFLEHKRLYRSFKGEVP-EEDYTIPLGKAKIVR--E-G-SDVTIVTYGAMVHTALEAAEELEKEGI 227 (324)
T ss_pred HHHHHHhcC-CCCEEEEecHHHhcccccCCC-CCCccccccceeeEe--c-C-CceEEEEechHHHHHHHHHHHHhhcCC
Confidence 999999998 99999987754330 1233 356789999999998 5 8 999999999999999999999999999
Q ss_pred ceEEEEcccccccCcccHHHHhccCCCCCeeEEEEecCCccccc------------ccccCcceEEEe-ccCCCCCCHHH
Q 006816 542 RVRVVSLVCWRLFDRQPAEYKEKVLPSRVVKRVSVEAGSSVGWR------------EYVGVEGKVIGV-EEFGASGAYLD 608 (630)
Q Consensus 542 ~~~Vi~~~~i~pld~~~~~~~~~v~~~~~~~~v~vEe~~~~g~~------------~~~~~~~~~~g~-d~f~~~g~~~~ 608 (630)
+++|||+|||+|||.+++. +||.||+ +++||.|.....|.+ .++++|+.|++- |.+.++ ...
T Consensus 228 s~EVIDLRTl~PlD~etIi--~SvkKTg-R~viV~Ea~~~~g~gaei~A~i~e~~f~~LdAPi~Rv~g~d~P~p~--~~~ 302 (324)
T COG0022 228 SAEVIDLRTLSPLDKETII--ASVKKTG-RLVIVHEAPKTGGIGAEIAALIAEEAFDYLDAPILRVAGPDTPVPY--SAA 302 (324)
T ss_pred CeEEEeccccCccCHHHHH--HHHHhhC-cEEEEEeccccCChHHHHHHHHHHHHHHhhcCchhhhcCCCCCCCc--chh
Confidence 9999999999999999987 7999999 563444444455543 257889999877 877753 456
Q ss_pred HHHHcCCChHHHHHHHHHhhh
Q 006816 609 TFKKYGFTIDNVTKVARSLLS 629 (630)
Q Consensus 609 l~~~~gl~~~~I~~~i~~~l~ 629 (630)
|.+.+-+++++|+++++++++
T Consensus 303 lE~~~lp~~~~I~~av~~v~~ 323 (324)
T COG0022 303 LEKAYLPNPERIVAAVKKVLE 323 (324)
T ss_pred HHhhhCCCHHHHHHHHHHHhh
Confidence 888899999999999999885
No 33
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=100.00 E-value=4e-49 Score=400.81 Aligned_cols=230 Identities=46% Similarity=0.735 Sum_probs=215.9
Q ss_pred hHHHHHhhcCCCCCCCcccHHHHHHHHHHHhhccCCCCCCCCCCCeEEecCcChhHHHHHHHHHcCCCCCCHHHHhhhhh
Q 006816 2 LIVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQYVCLHLAGFQSVQLEDLKRLCK 81 (630)
Q Consensus 2 ~~~~~~~~~~~GH~g~~ls~~~~~~~L~~~~~~~d~~~~~~~~~Dr~v~s~gH~~~~~y~~~~l~G~~~~~~~~l~~~r~ 81 (630)
++++|+.++++||+|+++|++|++.+||..+|++||+||.|++|||||+|+||++|++|+++++.|+ ++.++|.+||+
T Consensus 6 ~~~~~~~~~~~gh~g~~~s~~~i~~~L~~~~~~~~~~~~~~~~rd~~v~s~gH~~~~~ya~l~~~g~--~~~~~l~~~~~ 83 (255)
T cd02012 6 LSIDMVQKAGSGHPGGSLSAADILAVLYFKVLKYDPADPKWPNRDRFVLSKGHASPALYAVLALAGY--LPEEDLKTFRQ 83 (255)
T ss_pred HHHHHHHhcCCCCcCccHHHHHHHHHHHHHHhCcCCcCCCCCCCCeEEEcCCcHHHHHHHHHHHcCC--CCHHHHHHhcc
Confidence 6899999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred cCCCCCCCCCCCCcCcccccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHH
Q 006816 82 MGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAH 161 (630)
Q Consensus 82 ~~s~~~g~p~~~~~~~~~~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~ 161 (630)
.+|.++|||++..+||+++++|+||+++|+|+|+|+|.++.+ ++++|||++|||+++||++||++++|++
T Consensus 84 ~gs~l~gh~~~~~~~g~~~~~GslG~gl~~avG~Ala~~~~~----------~~~~v~~i~GDG~~~~G~~~eal~~a~~ 153 (255)
T cd02012 84 LGSRLPGHPEYGLTPGVEVTTGSLGQGLSVAVGMALAEKLLG----------FDYRVYVLLGDGELQEGSVWEAASFAGH 153 (255)
T ss_pred cCCCCCCCCCCCCCCCeeeCCcchhhHHHHHHHHHHHHHHhC----------CCCEEEEEECcccccccHHHHHHHHHHH
Confidence 999999999977778999999999999999999999998765 7899999999999999999999999999
Q ss_pred cCCCcEEEEEECCCCcccccccc-cChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeeccccc
Q 006816 162 WKLNKLTLIYDDNHNTIDGPTSL-VLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRERV 240 (630)
Q Consensus 162 ~~L~~li~i~~~N~~~i~~~~~~-~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~~~ 240 (630)
++|+|+++|+|||+|++++++.. ...+++.+++++|||+++.| ||| |++++.++++++++..++|++|+++|.|++
T Consensus 154 ~~l~~li~vvdnN~~~~~~~~~~~~~~~~~~~~~~a~G~~~~~v-~G~-d~~~l~~al~~a~~~~~~P~~I~~~t~kg~- 230 (255)
T cd02012 154 YKLDNLIAIVDSNRIQIDGPTDDILFTEDLAKKFEAFGWNVIEV-DGH-DVEEILAALEEAKKSKGKPTLIIAKTIKGK- 230 (255)
T ss_pred cCCCcEEEEEECCCccccCcHhhccCchhHHHHHHHcCCeEEEE-CCC-CHHHHHHHHHHHHHcCCCCEEEEEEeeccc-
Confidence 99999999999999999988743 34689999999999999998 999 999999999999862279999999999999
Q ss_pred CcccCC
Q 006816 241 NWVDRD 246 (630)
Q Consensus 241 g~~~~~ 246 (630)
|++..+
T Consensus 231 g~~~~e 236 (255)
T cd02012 231 GVPFME 236 (255)
T ss_pred ccCccC
Confidence 986433
No 34
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=100.00 E-value=4.1e-43 Score=402.09 Aligned_cols=461 Identities=13% Similarity=0.050 Sum_probs=320.8
Q ss_pred ccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEccccc-CchhHHHHHHHhHHcCCC--cEEEEEECCCCcc
Q 006816 102 TGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCA-MEGISHEAAALAAHWKLN--KLTLIYDDNHNTI 178 (630)
Q Consensus 102 ~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~-~eG~~~eal~~a~~~~L~--~li~i~~~N~~~i 178 (630)
.+++|...|.|+|+|+|.++.+....+ .....++|+.|||++ .+|.++|+||+|+.+++| .+|+||+||+|++
T Consensus 313 pShleav~Pva~G~A~A~q~~~~~~~~----~~~~v~v~~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvveNNq~g~ 388 (924)
T PRK09404 313 PSHLEIVNPVVEGSVRARQDRRGDGQD----RKKVLPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINNQIGF 388 (924)
T ss_pred ccccccccCeehhHHHHHHHhcCCccc----ccceEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEE
Confidence 478999999999999999887511000 122689999999998 799999999999999997 5899999999999
Q ss_pred cccccccC-hhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHH----HhcCCCcEEEEEeecccccCcccCC-CCCCCh
Q 006816 179 DGPTSLVL-SEDISARFKSLGWNTIMVENIHDNLSSFKEALMAA----ANETKKPTFIRVKKMRERVNWVDRD-QFHVIP 252 (630)
Q Consensus 179 ~~~~~~~~-~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a----~~~~~~P~~i~~~t~k~~~g~~~~~-~~~~~~ 252 (630)
+++..... ...+.+++++||++++.| ||+ |++++.++++.| ++ .++|++|++.|+|.+ ||+..| +.++++
T Consensus 389 tT~~~~~~s~~~~sd~Ak~~giP~~~V-DG~-D~~AV~~a~~~A~e~~r~-g~gPvlIE~~tYR~~-GHne~D~p~yr~p 464 (924)
T PRK09404 389 TTSPPDDRSTPYCTDVAKMVQAPIFHV-NGD-DPEAVVFATRLALEYRQK-FKKDVVIDLVCYRRH-GHNEGDEPSFTQP 464 (924)
T ss_pred eeCHHHhccchhHHHHHeecCCcEEEE-cCC-CHHHHHHHHHHHHHHHHh-cCcCEEEEEEEecCC-CCCCCCCCcCCCH
Confidence 99876543 456788999999999999 999 999999887765 44 789999999999998 997654 345666
Q ss_pred HHHHHHHHh----------h-hhchhHHHHHHHHHHhhh----------hcCCchhHhHHHHhcCCCCCC----ccc---
Q 006816 253 MVYREMQIQ----------T-DHGERLEKEWCSKVYNYR----------SKYPHEGAELDLLLNGGLLPG----WEN--- 304 (630)
Q Consensus 253 ~~~~~~~~~----------~-~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~p~~----~~~--- 304 (630)
++++.|++. + ++|..+++++++.-+++. .... ....+...+.+..++. ++.
T Consensus 465 ~ey~~~~~~~dpi~~~~~~Li~~G~lt~~e~~~i~~~~~~~v~~a~~~A~~~~-~~~~~~~~~~~~~~~~~~~~~~t~v~ 543 (924)
T PRK09404 465 LMYKKIKKHPTTRELYADKLVAEGVITEEEADEMVNEYRDALDAGFEVVKEWR-PADWLAGDWSPYLGHEWDDPVDTGVP 543 (924)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC-cccccccccccccccccccccCCCCC
Confidence 666666542 1 344333333332211110 0000 0000000000000000 000
Q ss_pred ------------cCCC-CC----------------CCCCCchHHHHHHHHHHHHHHhCCCeEEEecCCCCC---------
Q 006816 305 ------------ALPK-WS----------------TSDPLDATRGYSEKCLNQLAKVLPGLIGGSADLASS--------- 346 (630)
Q Consensus 305 ------------~~~~-~~----------------~~~~~~~~r~a~~~~L~~l~~~~~~iv~~~aD~~~s--------- 346 (630)
..|. |. .+.+..++..+...++..+++++++|++.++|++.+
T Consensus 544 ~~~l~~~~~~~~~~P~~f~~h~~~~k~~~~R~~~~~~~~~idw~~Ae~lA~~s~l~~~~~v~l~GeDv~rgtFshRHavl 623 (924)
T PRK09404 544 LERLKELAEKLTTVPEGFKVHPKVKKILEDRREMAEGEKPIDWGMAEALAFASLLDEGYPVRLSGQDSGRGTFSHRHAVL 623 (924)
T ss_pred HHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHHHhCCCCEEEEeeeCCCCcccccchhc
Confidence 0111 11 122345677888999999999999999999999753
Q ss_pred ----cccccccccCcCCCCCC-CCCccccccchHHHHHHHHHHHhcCCCCc--eEee-ehHHHHH---hhHHHHHHhc--
Q 006816 347 ----NKAYLLGYHDFSQPDSP-WGRNIRYGVREHAMAGISNGVALHGGGLI--PFAA-TFLIFSD---YMKNSIRLSA-- 413 (630)
Q Consensus 347 ----~~~~~~~~~~f~~~~~~-p~R~~~~gIaE~~~vg~a~GlA~~G~~~~--pv~~-~~~~F~~---~a~dqi~~~a-- 413 (630)
++..|.-++.+ . ++| +.|++|++|+|.+++|++.|+|+.| .+ ||++ .|.+|+. .++||+-+.+
T Consensus 624 ~dq~~gg~~~~~~~l-~-~~~g~~rV~nsplsE~~~~G~~~G~a~~g--~~~l~i~E~qfgDF~~~AQ~~~Dq~i~~~~~ 699 (924)
T PRK09404 624 HDQKTGETYIPLNHL-S-EGQASFEVYDSPLSEEAVLGFEYGYSTAE--PNTLVIWEAQFGDFANGAQVVIDQFISSGEQ 699 (924)
T ss_pred cccCCCCEeccccch-h-hhcCCceEecCcchHHHHHHHHHHHHhcC--CCCceEEEEeccccccchHHHHHHHHHHHHH
Confidence 33345556667 4 466 8999999999999999999999999 86 5887 5999985 7799986642
Q ss_pred --ccCCCeEEEEecCCCCCCCCCCCCCChhhhHHhhcC--CCcEEEecCChHHHHHHHHHHH-HcCCCcEEEEEcCCCcc
Q 006816 414 --LSHAGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAV--PRLLAFRPADGNETAGSYRVAI-ANRDVPSVIALSRQKIA 488 (630)
Q Consensus 414 --~~~~pv~~v~~~~g~~~g~~G~tHq~~~d~a~l~~i--P~l~v~~P~d~~e~~~~l~~a~-~~~~~P~~ir~~r~~~~ 488 (630)
....+++++. +.|+ +..|+-||+..-.++|.+. |||+|+.|+++.|+.++|+.++ +...+|++|..+|..+
T Consensus 700 k~~~~sglv~~~-p~G~--~g~g~~hsS~~~E~~l~~~~~~gl~Vv~pstpad~~~lLr~q~~r~~r~Pvv~~~pK~L~- 775 (924)
T PRK09404 700 KWGRLSGLVMLL-PHGY--EGQGPEHSSARLERFLQLCAEDNMQVCNPTTPAQYFHLLRRQALRPFRKPLVVMTPKSLL- 775 (924)
T ss_pred HhcCccCeEEEe-cCcC--CCCChhhhccCHHHHHHhCCCCCCEEEecCCHHHHHHHHHHHHhhCCCCCEEEeccHHHh-
Confidence 1236677775 4443 2347788776666888666 6999999999999999999864 6634999999887544
Q ss_pred cccC-CCcccccccccEEE-ecC-C-CCCCCcE--EEEEeCchHHHHHHHHHHHHhcCCceEEEEcccccccCcccHHHH
Q 006816 489 ANLE-GTSADEVERGGYIV-SDN-S-SENKPEI--ILIGTGTELSLCEGTAKTLRQEGRRVRVVSLVCWRLFDRQPAEYK 562 (630)
Q Consensus 489 ~~~~-~~~~~~~~~G~~~~-~~~-~-~~G~~dv--tiva~G~~v~~a~~aa~~L~~~gi~~~Vi~~~~i~pld~~~~~~~ 562 (630)
.... ......++.|.+.. +.. . .++ +|| |||+||.+++.++++++.+. ..+++||++++|.|||.+++.
T Consensus 776 r~~~~~s~~~e~~~~~f~~vi~~~~~~~~-~~v~r~iv~~Gk~~~~~~~a~~~~~--~~~v~ii~le~L~P~~~~~i~-- 850 (924)
T PRK09404 776 RHPLAVSSLEELAEGSFQPVIGDIDELDP-KKVKRVVLCSGKVYYDLLEARRKRG--IDDVAIVRIEQLYPFPHEELA-- 850 (924)
T ss_pred CCCCCCCCHHHcCCCCceeecccccccCc-cceeEEEEEcCHHHHHHHHHHHhCC--CCCEEEEEeeeeCCCCHHHHH--
Confidence 2100 00111222232221 110 0 114 689 79999999999999988553 349999999999999999876
Q ss_pred hccCCCC--CeeEEEEecCCcccc
Q 006816 563 EKVLPSR--VVKRVSVEAGSSVGW 584 (630)
Q Consensus 563 ~~v~~~~--~~~~v~vEe~~~~g~ 584 (630)
+++.|++ .+++++-||....|.
T Consensus 851 ~~v~k~~~~~~~v~vqEe~~n~G~ 874 (924)
T PRK09404 851 AELAKYPNAKEVVWCQEEPKNQGA 874 (924)
T ss_pred HHHHhcCCCCeEEEEeeCCCCCCc
Confidence 5677753 366566666666663
No 35
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=100.00 E-value=2.1e-42 Score=394.18 Aligned_cols=464 Identities=13% Similarity=0.077 Sum_probs=319.7
Q ss_pred ccccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEccccc-CchhHHHHHHHhHHcCCCc--EEEEEECC
Q 006816 98 IEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCA-MEGISHEAAALAAHWKLNK--LTLIYDDN 174 (630)
Q Consensus 98 ~~~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~-~eG~~~eal~~a~~~~L~~--li~i~~~N 174 (630)
+....++|+...|.|+|.|.|.++.+..... ..+..++|+.|||++ .+|.++|+||+|+.+++|. +|+||.||
T Consensus 310 l~~npSHLeav~Pva~G~ArA~q~~~~~~~~----~~~~v~v~~~GDgA~agQG~v~EaLNlA~l~~lPvGGtIfvveNN 385 (929)
T TIGR00239 310 LAFNPSHLEIVSPVVIGSTRARLDRLNDSPE----STKVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINN 385 (929)
T ss_pred ecCCCcccccccchhhhHHHHHHHhcCCccc----ccceEEEEEeccccccCCChHHHHHHHHHhcCCCCCCEEEEEEeC
Confidence 3445678999999999999999877521111 136789999999997 7999999999999999995 59999999
Q ss_pred CCcccccccccC-hhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHH----HhcCCCcEEEEEeecccccCcccCCC--
Q 006816 175 HNTIDGPTSLVL-SEDISARFKSLGWNTIMVENIHDNLSSFKEALMAA----ANETKKPTFIRVKKMRERVNWVDRDQ-- 247 (630)
Q Consensus 175 ~~~i~~~~~~~~-~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a----~~~~~~P~~i~~~t~k~~~g~~~~~~-- 247 (630)
+|+++++..... ...+.+++++||++++.| ||+ |++++.++++.| ++ .++|++|++.|+|.+ ||+..|+
T Consensus 386 qyg~tT~~~~~~s~~~~sd~Ak~ygiP~~~V-DG~-D~~AV~~a~~~Ave~~r~-g~gPvlIE~~tYR~~-GHne~D~p~ 461 (929)
T TIGR00239 386 QIGFTTNPLDARSTPYCSDLAKMIQAPIFHV-NAD-DPEAVAFATRLAVEYRNT-FKRDVFIDLVGYRRH-GHNEADEPS 461 (929)
T ss_pred CEEEEEcHHHhcCccCHHHHheecCCCEEEE-CCC-CHHHHHHHHHHHHHHHHh-cCCCEEEEEEeccCC-CCCCCCCCc
Confidence 999999765543 346788999999999999 999 999999887765 43 689999999999998 9976553
Q ss_pred CCCChHHHHHHH----------Hhh-hhchhHHHHHHHH-------HHh-hh--hcCCchhHhHHHHhcCCCCC----Cc
Q 006816 248 FHVIPMVYREMQ----------IQT-DHGERLEKEWCSK-------VYN-YR--SKYPHEGAELDLLLNGGLLP----GW 302 (630)
Q Consensus 248 ~~~~~~~~~~~~----------~~~-~~~~~~~~~~~~~-------~~~-~~--~~~~~~~~~~~~~~~~~~p~----~~ 302 (630)
++.| ++++.++ +.+ ++|..+++++++. +++ +. ...++....... ..+..+. .+
T Consensus 462 ~yrp-~~~~~i~~~~dPi~~~~~~Li~~Gv~te~e~~~i~~~~~~~v~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 539 (929)
T TIGR00239 462 ATQP-LMYQKIKKHPTPRKVYADKLVSEGVATEEDVTEMVNLYRDALEAADCVVPSWREMNTASFT-WSPELNHEWDEEY 539 (929)
T ss_pred cCCH-HHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhccCCccccccc-cccccccccccCC
Confidence 3444 4444443 222 3444333333322 111 00 000100000000 0000000 00
Q ss_pred cc---------------cCCC-C---------------C--CCCCCchHHHHHHHHHHHHHHhCCCeEEEecCCCCCcc-
Q 006816 303 EN---------------ALPK-W---------------S--TSDPLDATRGYSEKCLNQLAKVLPGLIGGSADLASSNK- 348 (630)
Q Consensus 303 ~~---------------~~~~-~---------------~--~~~~~~~~r~a~~~~L~~l~~~~~~iv~~~aD~~~s~~- 348 (630)
+. ..|. + + .+.+..++..|...+|..+++++++|+++++|++.+++
T Consensus 540 ~t~v~~~~l~~l~~~~~~~P~~f~~h~~~~k~~~~R~~~~~~g~~~~~~~~A~~~A~~~~l~~~~~V~l~GeDv~rGtFs 619 (929)
T TIGR00239 540 PNKVEMKRLQELAKRISEVPEGVEMHSRVAKIYFDRTKAMAAGEKLFDWGGAENLAFATLVDDGIPVRLSGEDSERGTFF 619 (929)
T ss_pred CCCCCHHHHHHHHHHhccCCCCccccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhcCCCEEEEeeeCCCcccc
Confidence 00 0011 1 0 12233678899999999999999999999999986433
Q ss_pred ------------cccccccCcCCCCCC-CCCccccccchHHHHHHHHHHHhcCCCCceE--ee-ehHHHHH---hhHHHH
Q 006816 349 ------------AYLLGYHDFSQPDSP-WGRNIRYGVREHAMAGISNGVALHGGGLIPF--AA-TFLIFSD---YMKNSI 409 (630)
Q Consensus 349 ------------~~~~~~~~f~~~~~~-p~R~~~~gIaE~~~vg~a~GlA~~G~~~~pv--~~-~~~~F~~---~a~dqi 409 (630)
..+..+..+ . ++| +.|++|++|+|.+++|++.|+|+.| .+|+ ++ +|.+|+. .++|||
T Consensus 620 hRHavl~dq~~g~~~~~~~~l-~-~~~g~~rV~nsplSE~a~~G~~~G~a~~g--~~~l~i~E~qfgDF~~~AQv~~Dq~ 695 (929)
T TIGR00239 620 QRHAVLHDQSNGSTYTPLQHL-H-NGQGAFRVWNSVLSEESVLGFEYGYATTS--PRTLVIWEAQFGDFANGAQVVIDQF 695 (929)
T ss_pred cccccccccccCceeecccch-h-hhcCCeeEEcCCccHHHHHHHHHhHHhcC--CCCceEEEEeccchhcchHHHHHHH
Confidence 223445566 3 466 8999999999999999999999999 7775 66 5999995 789998
Q ss_pred HHh--c--ccCCCeEEEEecCCCCCCCCCCCCCChhhhHHh--hcCCCcEEEecCChHHHHHHHH-HHHHcCCCcEEEEE
Q 006816 410 RLS--A--LSHAGVIYILTHDSIGLGEDGPTHQPVEQLAGL--RAVPRLLAFRPADGNETAGSYR-VAIANRDVPSVIAL 482 (630)
Q Consensus 410 ~~~--a--~~~~pv~~v~~~~g~~~g~~G~tHq~~~d~a~l--~~iP~l~v~~P~d~~e~~~~l~-~a~~~~~~P~~ir~ 482 (630)
-+. + ....+++++. +.|+ +..|+-||+..-.++| .++|||+|+.|+++.|++++|+ +++++.++|+++..
T Consensus 696 i~~~~~K~~~~sglv~~~-p~G~--~g~g~~hsS~~~E~~lql~~~~gl~Vv~pstpad~~~lLrrqa~r~~~~Pvi~~~ 772 (929)
T TIGR00239 696 ISSGEQKWGQMSGLVMLL-PHGY--EGQGPEHSSGRLERFLQLAAEQNMQVCVPTTPAQVFHILRRQALRGMRRPLVVMS 772 (929)
T ss_pred HHHHHHHhcCccCeEEEe-cCcC--CCCCchhhccCHHHHHHHhCCCCCEEEecCCHHHHHHHHHHHHHhCCCCCEEEec
Confidence 664 2 1236677775 4443 3347778776666888 8999999999999999999999 69985589999998
Q ss_pred cCCCcccccC-CCcccccccccEEE-----ecC-C-CCCCCcEE-EEEeCchHHHHHHHHHHHHhcCCceEEEEcccccc
Q 006816 483 SRQKIAANLE-GTSADEVERGGYIV-----SDN-S-SENKPEII-LIGTGTELSLCEGTAKTLRQEGRRVRVVSLVCWRL 553 (630)
Q Consensus 483 ~r~~~~~~~~-~~~~~~~~~G~~~~-----~~~-~-~~G~~dvt-iva~G~~v~~a~~aa~~L~~~gi~~~Vi~~~~i~p 553 (630)
+|..+ .... ......++.|.|.. .+. . ... .+++ +|.++.++..++++ ++++.+|++++||++++|.|
T Consensus 773 ~K~L~-r~~~a~S~~~e~~~~~f~~~i~~~~~~~~~~~~-~~v~~vv~~sg~v~~~l~~-~~~~~~~~~v~iirle~L~P 849 (929)
T TIGR00239 773 PKSLL-RHPLAVSSLEELAEGTFQPVIGEIEESGLSLDP-EGVKRLVLCSGKVYYDLHE-QRRKNGQKDVAIVRIEQLYP 849 (929)
T ss_pred cHhhh-cCccccCccccCCCCCcccccccccccccccCc-cCCcEEEEECchHHHHHHH-HHHhcCCCCEEEEEeeeeCC
Confidence 87644 2100 00111233333321 110 0 001 3566 66666689888888 66777899999999999999
Q ss_pred cCcccHHHHhccCCCC--CeeEEEEecCCccc
Q 006816 554 FDRQPAEYKEKVLPSR--VVKRVSVEAGSSVG 583 (630)
Q Consensus 554 ld~~~~~~~~~v~~~~--~~~~v~vEe~~~~g 583 (630)
||.+++. +++.|+. .+++++-||....|
T Consensus 850 f~~~~i~--~sl~k~~~~~~~vw~qEep~n~G 879 (929)
T TIGR00239 850 FPHKAVK--EVLQQYPNLKEIVWCQEEPLNMG 879 (929)
T ss_pred CCHHHHH--HHHHhcCCCCeEEEEeccCCCCC
Confidence 9999886 5777764 35645666665555
No 36
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=100.00 E-value=1.4e-43 Score=344.55 Aligned_cols=195 Identities=23% Similarity=0.380 Sum_probs=176.4
Q ss_pred CCCCCCcccHHHHHHHHHHHhhccCCCCCCCCCCCeEEecCcChhHHHHHHHHHcCCCCCCHHHHhhhhhcCCCCCCCCC
Q 006816 12 AGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQYVCLHLAGFQSVQLEDLKRLCKMGSRTPGHPE 91 (630)
Q Consensus 12 ~GH~g~~ls~~~~~~~L~~~~~~~d~~~~~~~~~Dr~v~s~gH~~~~~y~~~~l~G~~~~~~~~l~~~r~~~s~~~g~p~ 91 (630)
+||+|++||++||+++||.. +|+ +|||||+|+||++ |++++++|+ .++|++||+.++ ++|||+
T Consensus 1 ~gh~g~~ls~~~i~~~L~~~---~~~------~rDr~ils~gH~~---~~~~~~~g~----~~~l~~~~~~~~-~~g~p~ 63 (195)
T cd02007 1 GGHLGSNLGVVELTLALHYV---FDS------PKDKIIWDVGHQA---YPHKILTGR----RDQFHTLRQYGG-LSGFTK 63 (195)
T ss_pred CCCCCcchhHHHHHHHHHHh---cCC------CCCeEEEecccHH---HHHHHHHCC----HHHHhhhhcCCC-CCCCCc
Confidence 69999999999999999964 553 7999999999999 666677887 478999999999 789999
Q ss_pred CCCcCcccccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEE
Q 006816 92 NVVTEGIEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIY 171 (630)
Q Consensus 92 ~~~~~~~~~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~ 171 (630)
+.++|++++++|++|+++|+|+|+|+|.|+++ .+++|||++|||+++||++||++++|++++ .|+++|+
T Consensus 64 ~~~~~~~~~~~G~lG~gl~~A~G~Ala~k~~~----------~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~-~~li~vv 132 (195)
T cd02007 64 RSESEYDAFGTGHSSTSISAALGMAVARDLKG----------KKRKVIAVIGDGALTGGMAFEALNNAGYLK-SNMIVIL 132 (195)
T ss_pred CCCCCCceECCCchhhhHHHHHHHHHHHHHhC----------CCCeEEEEEcccccccChHHHHHHHHHHhC-CCEEEEE
Confidence 77789999999999999999999999998775 678999999999999999999999999995 5699999
Q ss_pred ECCCCcccccccccChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeecccccCc
Q 006816 172 DDNHNTIDGPTSLVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRERVNW 242 (630)
Q Consensus 172 ~~N~~~i~~~~~~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~~~g~ 242 (630)
|||+++++++++ +...+++++||++..++||| |++++.++++++++ .++|++|+++|.||+ |+
T Consensus 133 dnN~~~~~~~~~-----~~~~~~~a~G~~~~~~vdG~-d~~~l~~a~~~a~~-~~~P~~I~~~T~kg~-g~ 195 (195)
T cd02007 133 NDNEMSISPNVG-----TPGNLFEELGFRYIGPVDGH-NIEALIKVLKEVKD-LKGPVLLHVVTKKGK-GY 195 (195)
T ss_pred ECCCcccCCCCC-----CHHHHHHhcCCCccceECCC-CHHHHHHHHHHHHh-CCCCEEEEEEEeccc-Cc
Confidence 999999998876 57788999999999733999 99999999999987 789999999999998 75
No 37
>KOG0524 consensus Pyruvate dehydrogenase E1, beta subunit [Energy production and conversion]
Probab=100.00 E-value=1e-41 Score=327.02 Aligned_cols=294 Identities=16% Similarity=0.150 Sum_probs=246.5
Q ss_pred CCchHHHHHHHHHHHHHHhCCCeEEEecCCCCCcccccccccCcCCCCCC-CCCccccccchHHHHHHHHHHHhcCCCCc
Q 006816 314 PLDATRGYSEKCLNQLAKVLPGLIGGSADLASSNKAYLLGYHDFSQPDSP-WGRNIRYGVREHAMAGISNGVALHGGGLI 392 (630)
Q Consensus 314 ~~~~~r~a~~~~L~~l~~~~~~iv~~~aD~~~s~~~~~~~~~~f~~~~~~-p~R~~~~gIaE~~~vg~a~GlA~~G~~~~ 392 (630)
+.++.|+++++++.+.+++||++++++++++-+++. .|.++++ . ++| +.|++||||+|.+..|+|.|.|+.| +|
T Consensus 33 ~~mtvreALn~amdEEm~rD~~VfvmGEeV~qy~Ga-ykvtkGL-~-~K~G~~RV~DTPItE~gFtG~avGAA~~G--Lr 107 (359)
T KOG0524|consen 33 KEMTVREALNQAMDEEMDRDPRVFVMGEEVGQYGGA-YKVTKGL-L-DKFGDKRVLDTPITEMGFTGIAVGAAMAG--LR 107 (359)
T ss_pred eeeeHHHHHHHHHHHHhccCCcEEEechhhhhcCCe-eehhhhH-H-HhcCCceeecCcchhcccchhhHhHHHhC--cc
Confidence 567889999999999999999999999999866543 4445556 3 577 7899999999999999999999999 99
Q ss_pred eEee-ehHHHHHhhHHHHHHhc---------ccCCCeEEEEecCCCCCCCCCCCCCChhhhHHhhcCCCcEEEecCChHH
Q 006816 393 PFAA-TFLIFSDYMKNSIRLSA---------LSHAGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAVPRLLAFRPADGNE 462 (630)
Q Consensus 393 pv~~-~~~~F~~~a~dqi~~~a---------~~~~pv~~v~~~~g~~~g~~G~tHq~~~d~a~l~~iP~l~v~~P~d~~e 462 (630)
||++ +-..|+..+.|||.|+| .+++|++|++ +.|.+.| -|+.| ++.-.+|+.++||++|++|++++|
T Consensus 108 Pi~efMtfnFsmqAid~IiNsaakt~YmSgG~~~~piVfRG-PnG~~~g-v~AqH-SQ~f~~wy~siPGlkvvapysaed 184 (359)
T KOG0524|consen 108 PICEFMTFNFSMQAIDQIINSAAKTHYMSGGQQPVPIVFRG-PNGAAAG-VAAQH-SQDFASWYGSIPGLKVVAPYSAED 184 (359)
T ss_pred hhhhhhcchhHHHHHHHHHHHHHHHhcccCCceeccEEEeC-CCCcccc-hhhhh-hhhhHHHhccCCCceEeccCChhh
Confidence 9998 45788999999998853 3589999997 6666655 36667 344458999999999999999999
Q ss_pred HHHHHHHHHHcCCCcEEEEEcC----CCcccccCC---CcccccccccEEEecCCCCCCCcEEEEEeCchHHHHHHHHHH
Q 006816 463 TAGSYRVAIANRDVPSVIALSR----QKIAANLEG---TSADEVERGGYIVSDNSSENKPEIILIGTGTELSLCEGTAKT 535 (630)
Q Consensus 463 ~~~~l~~a~~~~~~P~~ir~~r----~~~~~~~~~---~~~~~~~~G~~~~~~~~~~G~~dvtiva~G~~v~~a~~aa~~ 535 (630)
++++|+.|+++ ++|+++...- ... + +++ +.++.+++|++++.+ + | +|||||++.-++..++|||+.
T Consensus 185 akGLlKaAIRd-~NPVV~lEnelLYg~~f-~-i~~E~ls~~fv~p~gkAkier--~-G-~~iTivt~Sr~v~~~leAA~~ 257 (359)
T KOG0524|consen 185 AKGLLKAAIRD-ENPVVFLENELLYGLSF-E-IPEEALSKDFVLPLGKAKIER--E-G-THITIVTYSRMVGHCLEAAET 257 (359)
T ss_pred hhhHHHHhccC-CCCeEEEechhhcCCCc-c-CChhhcCcceeeeccceeeee--c-C-CceEEEEechhHHHHHHHHHH
Confidence 99999999998 9999997542 122 2 222 245678999999988 5 8 999999999999999999999
Q ss_pred HHhcCCceEEEEcccccccCcccHHHHhccCCCCCeeEEEEecCCcccc-c------------ccccCcceEEEe-ccCC
Q 006816 536 LRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLPSRVVKRVSVEAGSSVGW-R------------EYVGVEGKVIGV-EEFG 601 (630)
Q Consensus 536 L~~~gi~~~Vi~~~~i~pld~~~~~~~~~v~~~~~~~~v~vEe~~~~g~-~------------~~~~~~~~~~g~-d~f~ 601 (630)
|.++|++++|||+|+|+|||.+++. +||.|++ ++ +++|+.+..++ + .|+++|+.|+.- |.+.
T Consensus 258 L~~~Gvs~EVInlrSirP~D~~tI~--~Sv~KT~-~l-vtVe~~~p~~gigaei~A~i~E~~fdyLdAPv~rvtg~DvP~ 333 (359)
T KOG0524|consen 258 LVAKGVSAEVINLRSIRPFDIETIG--ASVKKTN-RL-VTVEEGWPQFGIGAEICAQIMENAFDYLDAPVQRVTGADVPT 333 (359)
T ss_pred HHhcCCCceeEeeeccCcccHHHHH--HHHhhhc-eE-EEEeccccccchhHHHHHHHHHHHHhhhcchhhhhcCCCCCC
Confidence 9999999999999999999999997 7899988 46 99999987543 2 367889888866 8887
Q ss_pred CCCCHHHHHHHcCCChHHHHHHHHHhh
Q 006816 602 ASGAYLDTFKKYGFTIDNVTKVARSLL 628 (630)
Q Consensus 602 ~~g~~~~l~~~~gl~~~~I~~~i~~~l 628 (630)
++ ..+|.+..-+++++|+.++++++
T Consensus 334 PY--a~~lE~~a~p~~~~iV~Avk~~~ 358 (359)
T KOG0524|consen 334 PY--AKTLEDWAVPQPADIVTAVKKLC 358 (359)
T ss_pred cc--chhhHhhcCCCHHHHHHHHHHhh
Confidence 76 34688888999999999999875
No 38
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=100.00 E-value=1.6e-40 Score=325.16 Aligned_cols=202 Identities=26% Similarity=0.427 Sum_probs=161.4
Q ss_pred HHHHHhhcCCCCCCCcccHHHHHHHHHHHhhccCCCCCCCCCCCeEEecCcChhHHHHHHHHHcCCCCCCHHHHhhhhhc
Q 006816 3 IVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQYVCLHLAGFQSVQLEDLKRLCKM 82 (630)
Q Consensus 3 ~~~~~~~~~~GH~g~~ls~~~~~~~L~~~~~~~d~~~~~~~~~Dr~v~s~gH~~~~~y~~~~l~G~~~~~~~~l~~~r~~ 82 (630)
+++.+ ..++||++++||+||++.|||++ ||+ ++|+|||+.|||+ |+|++||||. +.+.+.||.
T Consensus 29 ii~~v-s~~GGHl~snLGvVELTiALH~v---Fd~------p~DkivwDvGHQ~---Y~HKiLTGR~----~~f~TlRq~ 91 (270)
T PF13292_consen 29 IIETV-SKTGGHLASNLGVVELTIALHYV---FDS------PKDKIVWDVGHQA---YVHKILTGRR----DRFHTLRQY 91 (270)
T ss_dssp HHHHC-TCCCSTHHHHHCCHHHHHHHHHH---S-T------TTSEEEESSSTT----HHHHHCTTTC----CCGGGTTST
T ss_pred HHHHH-hhcCCCCCCCccHHHHHHHHHHH---hCC------CCCeEEEeccccc---chhhhccCcH----HHhchhhhc
Confidence 45666 48899999999999999999999 887 8999999999999 9999999995 778999999
Q ss_pred CCCCCCCCCCCCcCcccccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHc
Q 006816 83 GSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHW 162 (630)
Q Consensus 83 ~s~~~g~p~~~~~~~~~~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~ 162 (630)
++.+ |||++.+++++.+.+|+.|.++++|+|+|.|+++++ .+++|||++|||++..||++||||.|+..
T Consensus 92 gGlS-GF~~r~ES~~D~f~~GHsstsiSaa~Gma~ar~l~~----------~~~~vVaVIGDGalt~Gma~EALN~~g~~ 160 (270)
T PF13292_consen 92 GGLS-GFPKRSESEYDAFGAGHSSTSISAALGMAVARDLKG----------EDRKVVAVIGDGALTGGMAFEALNNAGHL 160 (270)
T ss_dssp TS---SS--TTT-TT--S--SSSS-HHHHHHHHHHHHHHHT----------S---EEEEEETTGGGSHHHHHHHHHHHHH
T ss_pred CCcC-CCCCcccCCCCcccCCccHhHHHHHHHHHHHHHhcC----------CCCcEEEEECCcchhHHHHHHHHHHHHhc
Confidence 9998 999999999999999999999999999999998887 78999999999999999999999999999
Q ss_pred CCCcEEEEEECCCCcccccccccC---------------hh---------------------cH----HHHHHhCCCeEE
Q 006816 163 KLNKLTLIYDDNHNTIDGPTSLVL---------------SE---------------------DI----SARFKSLGWNTI 202 (630)
Q Consensus 163 ~L~~li~i~~~N~~~i~~~~~~~~---------------~~---------------------~~----~~~~~a~G~~~~ 202 (630)
+ +++++|+|||+++|+.++.... .. .+ ..+|+.+|++|+
T Consensus 161 ~-~~liVILNDN~mSIs~nvGals~~L~~l~~~~~y~~~k~~~~~~l~~~~~~~~~~~r~~~s~K~~~~~lFe~LG~~Y~ 239 (270)
T PF13292_consen 161 K-SNLIVILNDNEMSISPNVGALSKYLSKLRSSPTYNKLKEDVKSLLKKIPPIEEFAKRIKESLKGFSPNLFEELGFDYI 239 (270)
T ss_dssp T--SEEEEEEE-SBSSSB--SSHCCC-------------------------------------------CCCHHCT-EEE
T ss_pred C-CCEEEEEeCCCcccCCCcchHHHHHHhccchhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhhhHHHHHHcCCeEE
Confidence 8 5699999999999998764110 00 01 134788899999
Q ss_pred EEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEee
Q 006816 203 MVENIHDNLSSFKEALMAAANETKKPTFIRVKK 235 (630)
Q Consensus 203 ~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t 235 (630)
.++||| |+++|.++|+++++ .++|++||+.|
T Consensus 240 GPiDGH-dl~~Li~~l~~~K~-~~gPvllHV~T 270 (270)
T PF13292_consen 240 GPIDGH-DLEELIEVLENAKD-IDGPVLLHVIT 270 (270)
T ss_dssp EEEETT--HHHHHHHHHHHCC-SSSEEEEEEE-
T ss_pred eccCCC-CHHHHHHHHHHHhc-CCCCEEEEEeC
Confidence 999999 99999999999998 79999999987
No 39
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=100.00 E-value=2.3e-37 Score=290.96 Aligned_cols=154 Identities=42% Similarity=0.603 Sum_probs=144.2
Q ss_pred HHHHHHHHHHHhCCCeEEEecCCCCCcccccccccCcCCCCCCCCCccccccchHHHHHHHHHHHhcCCCCceEeeehHH
Q 006816 321 YSEKCLNQLAKVLPGLIGGSADLASSNKAYLLGYHDFSQPDSPWGRNIRYGVREHAMAGISNGVALHGGGLIPFAATFLI 400 (630)
Q Consensus 321 a~~~~L~~l~~~~~~iv~~~aD~~~s~~~~~~~~~~f~~~~~~p~R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~~~~~ 400 (630)
+++++|.+++++||+++++++|++.++. ++.| + ++||+||||+||+|++|+|+|+|||+.| ++||+++|+.
T Consensus 2 ~~~~~l~~~~~~~~~~v~~~~Dl~~~~~-----~~~~-~-~~~p~r~i~~gIaE~~~vg~A~GlA~~G--~~pi~~~~~~ 72 (156)
T cd07033 2 AFGEALLELAKKDPRIVALSADLGGSTG-----LDKF-A-KKFPDRFIDVGIAEQNMVGIAAGLALHG--LKPFVSTFSF 72 (156)
T ss_pred hHHHHHHHHHhhCCCEEEEECCCCCCCC-----cHHH-H-HhCCCCeEEeChhHHHHHHHHHHHHHCC--CeEEEEECHH
Confidence 6899999999999999999999986543 3456 3 6899999999999999999999999999 9999999988
Q ss_pred HHHhhHHHHHH-hcccCCCeEEEEecCCCCCCCCCCCCCChhhhHHhhcCCCcEEEecCChHHHHHHHHHHHHcCCCcEE
Q 006816 401 FSDYMKNSIRL-SALSHAGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAVPRLLAFRPADGNETAGSYRVAIANRDVPSV 479 (630)
Q Consensus 401 F~~~a~dqi~~-~a~~~~pv~~v~~~~g~~~g~~G~tHq~~~d~a~l~~iP~l~v~~P~d~~e~~~~l~~a~~~~~~P~~ 479 (630)
|++|++||||+ +|++++||+++++++|++.|++|+|||+++|++++|++||++|++|+|++|++++|+++++. ++|+|
T Consensus 73 f~~ra~dqi~~~~a~~~~pv~~~~~~~g~~~~~~G~tH~~~~~~a~~~~iPg~~v~~Ps~~~~~~~ll~~a~~~-~~P~~ 151 (156)
T cd07033 73 FLQRAYDQIRHDVALQNLPVKFVGTHAGISVGEDGPTHQGIEDIALLRAIPNMTVLRPADANETAAALEAALEY-DGPVY 151 (156)
T ss_pred HHHHHHHHHHHHHhccCCCeEEEEECCcEecCCCCcccchHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHhC-CCCEE
Confidence 99999999995 69999999999999999899999999999999999999999999999999999999999998 88999
Q ss_pred EEEcC
Q 006816 480 IALSR 484 (630)
Q Consensus 480 ir~~r 484 (630)
||++|
T Consensus 152 irl~~ 156 (156)
T cd07033 152 IRLPR 156 (156)
T ss_pred EEeeC
Confidence 99987
No 40
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.6e-34 Score=304.15 Aligned_cols=506 Identities=22% Similarity=0.246 Sum_probs=341.3
Q ss_pred HHHhhcCCCCCCCcccHHHHHHHHHHHhhccCCCCCCCCCCCeE-EecCcChhHHHHHHHHHcCCC-----C--CCHHHH
Q 006816 5 DAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRF-VLSAGHGCLLQYVCLHLAGFQ-----S--VQLEDL 76 (630)
Q Consensus 5 ~~~~~~~~GH~g~~ls~~~~~~~L~~~~~~~d~~~~~~~~~Dr~-v~s~gH~~~~~y~~~~l~G~~-----~--~~~~~l 76 (630)
+.++...-||+|++.++..++..+-+..-++| .+++ |+..||+.+++-+..+|.|.- + .+.+-|
T Consensus 53 e~lK~r~lGHwGt~pg~s~~Y~H~nr~i~~~d--------~~~~yv~GpGHg~~~~~~~~yLeGtys~~yp~~s~d~~Gm 124 (793)
T COG3957 53 EHLKARLLGHWGTQPGLSFIYAHLNRLISKYD--------ANMAYVMGPGHGGPAIVANTYLEGTYSEMYPDISQDEEGL 124 (793)
T ss_pred hhccchhcccccCCCCchhhhhhhhHHHHhhC--------cceEEEecCCCCcceeeeccccCCccccccccccccHHHH
Confidence 34555667999999999999888887766664 4555 677799999999999999981 1 223333
Q ss_pred ----hhhhhcCCCCCCCCCCCCcCcccccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCch--
Q 006816 77 ----KRLCKMGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEG-- 150 (630)
Q Consensus 77 ----~~~r~~~s~~~g~p~~~~~~~~~~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG-- 150 (630)
++|+-.|+. ++|.. .++||.....|.||++++.|.|+++-+ |+..+.|++|||+-.+|
T Consensus 125 ~rL~~qFs~PgGi-~SH~~-petPGsIhEGGeLGy~l~ha~gAa~d~--------------Pdli~~~vvGDGeaetgpl 188 (793)
T COG3957 125 NRLFKQFSFPGGI-GSHVA-PETPGSIHEGGELGYALSHAYGAAFDN--------------PDLIVACVVGDGEAETGPL 188 (793)
T ss_pred HHHHHhccCCCCc-ccccC-CCCCCccCcCcchhHHHHHHHHhhcCC--------------CCcEEEEEecccccccCcc
Confidence 455556654 47877 689999999999999999999999976 89999999999977665
Q ss_pred -hHHHHHHHhHHcCCCcEEEEEECCCCcccccccc--cChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHH--------H
Q 006816 151 -ISHEAAALAAHWKLNKLTLIYDDNHNTIDGPTSL--VLSEDISARFKSLGWNTIMVENIHDNLSSFKEAL--------M 219 (630)
Q Consensus 151 -~~~eal~~a~~~~L~~li~i~~~N~~~i~~~~~~--~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al--------~ 219 (630)
++|-+-.+..--+-.+++.|+.-|+|.|+.++.. ....++.+.|+++|++.+.| +|+ |+++..+.. +
T Consensus 189 atsWhs~kf~np~~dGavLPIL~lNGykI~npT~lar~s~~el~~~f~G~Gy~p~~v-eg~-d~~d~hq~mAa~ldt~~~ 266 (793)
T COG3957 189 ATSWHSNKFLNPARDGAVLPILHLNGYKIENPTVLARISDEELKALFEGYGYEPVFV-EGA-DPADMHQLMAAVLDTAFE 266 (793)
T ss_pred ccccccccccCccccCceeeEEEecceeccCceeeeecChHHHHHHHhhCCCceeEe-cCC-ChHHhhhhHHHHHHHHHH
Confidence 4566655555555668999999999999998863 34567999999999999998 998 888733321 1
Q ss_pred -------HHHhc-----CCCcEEEEEeecccccCccc-CCCCCCChHHHHHHHHh--h-------hhchhHHHHHHHHHH
Q 006816 220 -------AAANE-----TKKPTFIRVKKMRERVNWVD-RDQFHVIPMVYREMQIQ--T-------DHGERLEKEWCSKVY 277 (630)
Q Consensus 220 -------~a~~~-----~~~P~~i~~~t~k~~~g~~~-~~~~~~~~~~~~~~~~~--~-------~~~~~~~~~~~~~~~ 277 (630)
+++.. ...|. |.++|.||+ +-.. .++++. ...|+.. . .+.....++|.+.++
T Consensus 267 ~i~~iq~~ar~~~~~~~p~wPm-iilrtPkGw-t~p~~idG~~~----eg~~raHqvPl~~~~~~p~h~~~l~~wl~sy~ 340 (793)
T COG3957 267 EIQRIQRRARENNEAIRPRWPM-IILRTPKGW-TGPVEIDGKKL----EGSWRAHQVPLKGHNLNPAHLLELEEWLKSYK 340 (793)
T ss_pred HHHHHHHHHHhcccccCccccc-eeeecCCCC-cCceeecceec----cccchhccCCCCCCCCCchhhHHHHHHHHhcC
Confidence 13321 13454 668999988 4311 111110 1122211 1 011223445544321
Q ss_pred h------hhhcCCchhHhH----HHHhc-C------CCCCCccccCCCC--------CCC-CCCchHHHHHHHHHHHHHH
Q 006816 278 N------YRSKYPHEGAEL----DLLLN-G------GLLPGWENALPKW--------STS-DPLDATRGYSEKCLNQLAK 331 (630)
Q Consensus 278 ~------~~~~~~~~~~~~----~~~~~-~------~~p~~~~~~~~~~--------~~~-~~~~~~r~a~~~~L~~l~~ 331 (630)
. .....++.. ++ .+++. + .++. +-.+|++ .++ .++.+| .++++.|.++++
T Consensus 341 p~elfde~gaL~~e~~-~~ap~~~~Rm~~~p~angg~l~~--eL~lPD~r~~~v~~~~~g~~~~~~t-~~lg~~l~dv~k 416 (793)
T COG3957 341 PEELFDEHGALKPELR-ELAPKGEERMGANPHANGGLLPR--ELPLPDLRDYAVEVSEPGAVTAEST-TALGRFLRDVMK 416 (793)
T ss_pred hHhhhcccCCCCHHHH-HhccccccccCCCCcccCccccc--cCCCCChhhcCcccCCCCccchhhH-HHHHHHHHHHHh
Confidence 1 011111111 11 00111 1 1111 1123333 122 233444 489999999999
Q ss_pred hCCC-eEEEecCCCCCcccc--cccccCc----CCC----CCCCCCccccccchHHHHHHHHHHHhcCCCCceEeeehHH
Q 006816 332 VLPG-LIGGSADLASSNKAY--LLGYHDF----SQP----DSPWGRNIRYGVREHAMAGISNGVALHGGGLIPFAATFLI 400 (630)
Q Consensus 332 ~~~~-iv~~~aD~~~s~~~~--~~~~~~f----~~~----~~~p~R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~~~~~ 400 (630)
.|++ +.++++|...|+... ++.++.. ..+ ....+|+++ .++|+.+.|++.|+++.| -+-++++|.+
T Consensus 417 ~N~~~fRvf~PDE~aSNrl~~v~~~tkr~~~~~~~~ed~~lsp~GRV~e-~LSEh~c~Gwlegy~LtG--r~glf~sYEa 493 (793)
T COG3957 417 LNPDNFRVFGPDETASNRLGGVLKVTKRVWMAVTLPEDDFLSPDGRVME-VLSEHACQGWLEGYLLTG--RHGLFASYEA 493 (793)
T ss_pred cCccceEeeCCCcchhhhhHHHHHHhhhhhcccccCcccccCCCceeeh-hhcHHHHHHHHHHHHhcC--CccceeeHHH
Confidence 9987 999999987776542 3332211 000 123589999 799999999999999999 9999999999
Q ss_pred HH---HhhHHHH--HH-hc--------ccCCCeEEEEecCCCCCCCCCCCCCChhhhHHhh-cCCC-cEEEecCChHHHH
Q 006816 401 FS---DYMKNSI--RL-SA--------LSHAGVIYILTHDSIGLGEDGPTHQPVEQLAGLR-AVPR-LLAFRPADGNETA 464 (630)
Q Consensus 401 F~---~~a~dqi--~~-~a--------~~~~pv~~v~~~~g~~~g~~G~tHq~~~d~a~l~-~iP~-l~v~~P~d~~e~~ 464 (630)
|+ +.|+.|. .. .+ +..++.++. ..-.-.+.+|.|||...-+..+. -.|+ ++||.|+|+|.+.
T Consensus 494 F~~iv~sm~nQh~kwl~v~~e~~wr~~~~Sln~l~T--S~vw~QdhNGfsHQdPgf~~~~~~k~~d~vRvyfPpDaNtlL 571 (793)
T COG3957 494 FAHIVDSMFNQHAKWLKVTREVEWRRPIPSLNYLLT--SHVWRQDHNGFSHQDPGFIDHVANKKSDIVRVYFPPDANTLL 571 (793)
T ss_pred HHHHHHHHHhhhHHHHHHHHhcccCCCCCcccceee--hhhhhcccCCCccCCchHHHHHHhhccCceeEecCCCCcchh
Confidence 98 4688872 22 12 234555553 34445799999999554444433 3444 7999999999999
Q ss_pred HHHHHHHHcCCCcEEEEEcCCCcccccCC--CcccccccccEEEecCC-CCCCCcEEEEEeCchH-HHHHHHHHHHHhcC
Q 006816 465 GSYRVAIANRDVPSVIALSRQKIAANLEG--TSADEVERGGYIVSDNS-SENKPEIILIGTGTEL-SLCEGTAKTLRQEG 540 (630)
Q Consensus 465 ~~l~~a~~~~~~P~~ir~~r~~~~~~~~~--~~~~~~~~G~~~~~~~~-~~G~~dvtiva~G~~v-~~a~~aa~~L~~~g 540 (630)
.++.+|++.++.-.+|..+|++. |+..+ +.......|..++...+ +.|++||++.+.|.+. .++++|++.|++++
T Consensus 572 av~d~~l~s~n~in~iVa~K~p~-pq~~t~~qA~~~~~~G~~iwewas~d~gepdvV~A~~Gd~~t~e~laAa~~L~e~~ 650 (793)
T COG3957 572 AVYDHCLRSRNKINVIVASKQPR-PQWLTMEQAEKHCTDGAGIWEWASGDDGEPDVVMACAGDVPTIEVLAAAQILREEG 650 (793)
T ss_pred hhhhHHhhccCceEEEEecCCCc-ceeecHHHHHHHhhcCcEEEEeccCCCCCCCEEEEecCCcchHHHHHHHHHHHHhC
Confidence 99999999988888999999987 66433 12334556665554322 2245799999999986 88999999999998
Q ss_pred --CceEEEEccccc
Q 006816 541 --RRVRVVSLVCWR 552 (630)
Q Consensus 541 --i~~~Vi~~~~i~ 552 (630)
+.++||++..+.
T Consensus 651 p~l~vRvVnVvdl~ 664 (793)
T COG3957 651 PELRVRVVNVVDLM 664 (793)
T ss_pred ccceEEEEEEecch
Confidence 888877765543
No 41
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=100.00 E-value=1.3e-34 Score=278.54 Aligned_cols=168 Identities=31% Similarity=0.377 Sum_probs=142.2
Q ss_pred CCchHHHHHHHHHHHHHHhCCCeEEEecCCCCCcccccccccCcCCCCCCCCCccccccchHHHHHHHHHHHhcCCC-Cc
Q 006816 314 PLDATRGYSEKCLNQLAKVLPGLIGGSADLASSNKAYLLGYHDFSQPDSPWGRNIRYGVREHAMAGISNGVALHGGG-LI 392 (630)
Q Consensus 314 ~~~~~r~a~~~~L~~l~~~~~~iv~~~aD~~~s~~~~~~~~~~f~~~~~~p~R~~~~gIaE~~~vg~a~GlA~~G~~-~~ 392 (630)
+++++|++++++|.+++++||+++++++|++++++....+ . .....|+||||+||+|++|+|+|+|||+.| + ++
T Consensus 1 ~k~~~~~a~~~~l~~~~~~d~~vv~~~~D~~~~~~~~~~~---~-~~~~~~~r~i~~gIaE~~~vg~a~GlA~~G-~~~~ 75 (178)
T PF02779_consen 1 KKISMRDAFGEALAELAEEDPRVVVIGADLGGGTFGVTFG---L-AFPFGPGRFINTGIAEQNMVGMAAGLALAG-GLRP 75 (178)
T ss_dssp -EEEHHHHHHHHHHHHHHHTTTEEEEESSTHHHHTSTTTT---H-HBHHTTTTEEE--S-HHHHHHHHHHHHHHS-SSEE
T ss_pred CCccHHHHHHHHHHHHHhhCCCEEEEECCcCcchhhhhhh---c-cccCCCceEEecCcchhhccceeeeeeecc-cccc
Confidence 3678999999999999999999999999999766543211 1 001126699999999999999999999998 5 66
Q ss_pred eEeeehHHHHH----hhHHHHHH-hcccCCCeEEEEecCCCCCCCCCCCCCChhhhHHhhcCCCcEEEecCChHHHHHHH
Q 006816 393 PFAATFLIFSD----YMKNSIRL-SALSHAGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAVPRLLAFRPADGNETAGSY 467 (630)
Q Consensus 393 pv~~~~~~F~~----~a~dqi~~-~a~~~~pv~~v~~~~g~~~g~~G~tHq~~~d~a~l~~iP~l~v~~P~d~~e~~~~l 467 (630)
||+.+|++|+. |+++|+++ .+++++||+ +++++|.++|.+|+|||+++|+++||++|||+|++|+|+.|++++|
T Consensus 76 ~~~~~f~~F~~~~q~r~~~~~~~~~~~~~~~v~-v~~~~g~~~~~~G~tH~s~~d~~~~~~iPg~~v~~Psd~~e~~~~l 154 (178)
T PF02779_consen 76 PVESTFADFLTPAQIRAFDQIRNDMAYGQLPVP-VGTRAGLGYGGDGGTHHSIEDEAILRSIPGMKVVVPSDPAEAKGLL 154 (178)
T ss_dssp EEEEEEGGGGGGGHHHHHHHHHHHHHHHTS-EE-EEEEESGGGSTTGTTTSSSSHHHHHHTSTTEEEEE-SSHHHHHHHH
T ss_pred eeEeeccccccccchhhhhhhhhhhhcccceec-ceeecCcccccccccccccccccccccccccccccCCCHHHHHHHH
Confidence 67778999999 99999985 699999999 7789999999999999999999999999999999999999999999
Q ss_pred HHHHHc-CCCcEEEEEcCCCc
Q 006816 468 RVAIAN-RDVPSVIALSRQKI 487 (630)
Q Consensus 468 ~~a~~~-~~~P~~ir~~r~~~ 487 (630)
+++++. .++|+|||++|+.+
T Consensus 155 ~~a~~~~~~~P~~ir~~r~~~ 175 (178)
T PF02779_consen 155 RAAIRRESDGPVYIREPRGLY 175 (178)
T ss_dssp HHHHHSSSSSEEEEEEESSEE
T ss_pred HHHHHhCCCCeEEEEeeHHhC
Confidence 999993 28999999999876
No 42
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=100.00 E-value=4.9e-34 Score=269.61 Aligned_cols=155 Identities=18% Similarity=0.193 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHhCCCeEEEecCCCCCcccccccccCcCCCCCCCC-CccccccchHHHHHHHHHHHhcCCCCceEee-eh
Q 006816 321 YSEKCLNQLAKVLPGLIGGSADLASSNKAYLLGYHDFSQPDSPWG-RNIRYGVREHAMAGISNGVALHGGGLIPFAA-TF 398 (630)
Q Consensus 321 a~~~~L~~l~~~~~~iv~~~aD~~~s~~~~~~~~~~f~~~~~~p~-R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~-~~ 398 (630)
+++++|.+++++||+++++++|++.+++. +..++.| + ++||+ ||||+||+||+|+|+|+|||+.| ++||++ +|
T Consensus 2 ~~~~~l~~~~~~~~~vv~l~~D~~~~~g~-~~~~~~~-~-~~~p~~R~~~~gIaEq~~vg~AaGlA~~G--~~pi~~~~~ 76 (167)
T cd07036 2 AINEALDEEMERDPRVVVLGEDVGDYGGV-FKVTKGL-L-DKFGPDRVIDTPIAEAGIVGLAVGAAMNG--LRPIVEIMF 76 (167)
T ss_pred HHHHHHHHHHhcCCCEEEECcccccCCCc-chHhHHH-H-HhCCCceEEeCCCcHHHHHHHHHHHHHcC--CEEEEEeeh
Confidence 68999999999999999999999654321 2224568 4 68999 99999999999999999999999 999998 69
Q ss_pred HHHHHhhHHHHHHh-ccc--------CCCeEEEEecCCCCCCCCCCCCCChhhhHHhhcCCCcEEEecCChHHHHHHHHH
Q 006816 399 LIFSDYMKNSIRLS-ALS--------HAGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAVPRLLAFRPADGNETAGSYRV 469 (630)
Q Consensus 399 ~~F~~~a~dqi~~~-a~~--------~~pv~~v~~~~g~~~g~~G~tHq~~~d~a~l~~iP~l~v~~P~d~~e~~~~l~~ 469 (630)
++|++|++||||+. |++ ++||++++.+.| ++.+|+|| +.+|+++||+||||+|++|+|+.|+++++++
T Consensus 77 a~Fl~ra~dQi~~~~a~~~~~~~~~~~~pv~i~~~~gg--~~~~G~th-s~~~~a~lr~iPg~~V~~Psd~~e~~~~l~~ 153 (167)
T cd07036 77 ADFALPAFDQIVNEAAKLRYMSGGQFKVPIVIRGPNGG--GIGGGAQH-SQSLEAWFAHIPGLKVVAPSTPYDAKGLLKA 153 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCccCCEEEEEeCCC--CCCcChhh-hhhHHHHHhcCCCCEEEeeCCHHHHHHHHHH
Confidence 99999999999984 766 599999984443 56789985 6899999999999999999999999999999
Q ss_pred HHHcCCCcEEEEEcC
Q 006816 470 AIANRDVPSVIALSR 484 (630)
Q Consensus 470 a~~~~~~P~~ir~~r 484 (630)
++++ ++|++|+.+|
T Consensus 154 ~~~~-~~P~~~~e~k 167 (167)
T cd07036 154 AIRD-DDPVIFLEHK 167 (167)
T ss_pred HHhC-CCcEEEEecC
Confidence 9997 8999999886
No 43
>KOG0525 consensus Branched chain alpha-keto acid dehydrogenase E1, beta subunit [Energy production and conversion]
Probab=100.00 E-value=9.6e-34 Score=268.05 Aligned_cols=292 Identities=16% Similarity=0.137 Sum_probs=230.2
Q ss_pred CCchHHHHHHHHHHHHHHhCCCeEEEecCCCCCcccccccccCcCCCCCC-CCCccccccchHHHHHHHHHHHhcCCCCc
Q 006816 314 PLDATRGYSEKCLNQLAKVLPGLIGGSADLASSNKAYLLGYHDFSQPDSP-WGRNIRYGVREHAMAGISNGVALHGGGLI 392 (630)
Q Consensus 314 ~~~~~r~a~~~~L~~l~~~~~~iv~~~aD~~~s~~~~~~~~~~f~~~~~~-p~R~~~~gIaE~~~vg~a~GlA~~G~~~~ 392 (630)
+++..-++++++|.-.++.||+-+++++|++-++ .|+-+-++ + ++| .+|+||++++||.++|+..|+|..| -+
T Consensus 39 ~~mnl~qsvn~al~ial~tdp~a~vfgedv~fgg--vfrct~gl-~-~kfgk~rvfntplceqgivgfgig~aa~g--~~ 112 (362)
T KOG0525|consen 39 KKMNLYQSVNQALHIALETDPRAVVFGEDVAFGG--VFRCTTGL-A-EKFGKDRVFNTPLCEQGIVGFGIGLAAMG--AT 112 (362)
T ss_pred ccchHHHHHHHHHHHHhhcCCceEEeccccccce--EEEeecch-H-HHhCccccccCchhhcccceechhhhhcc--cc
Confidence 5567778999999999999999999999997543 34444456 3 567 6999999999999999999999999 99
Q ss_pred eEeee-hHHHHHhhHHHHHHh-c---c-----cCC-CeEEEEecCCCC-CCCCCCCCCChhhhHHhhcCCCcEEEecCCh
Q 006816 393 PFAAT-FLIFSDYMKNSIRLS-A---L-----SHA-GVIYILTHDSIG-LGEDGPTHQPVEQLAGLRAVPRLLAFRPADG 460 (630)
Q Consensus 393 pv~~~-~~~F~~~a~dqi~~~-a---~-----~~~-pv~~v~~~~g~~-~g~~G~tHq~~~d~a~l~~iP~l~v~~P~d~ 460 (630)
.+.++ |++++--+||||.|- + | -++ ..+++ +.+| +|.+|-.| ++.-.++|.+.||++|+.|..+
T Consensus 113 aiaeiqfadyifpafdqivneaakfryrsgnqfncg~ltir---~p~gavghg~~yh-sqspeaff~h~pgikvviprsp 188 (362)
T KOG0525|consen 113 AIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTIR---APWGAVGHGALYH-SQSPEAFFCHVPGIKVVIPRSP 188 (362)
T ss_pred eEEEEeeccccchhHHHHHHHHHhheeccCCccccCceEEe---ccccccccccccc-cCCchhheecCCCceEEecCCc
Confidence 99996 888888899999883 2 2 133 35554 3344 78755555 4555599999999999999999
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEcC----CCcccccCCCcccccccccEEEecCCCCCCCcEEEEEeCchHHHHHHHHHHH
Q 006816 461 NETAGSYRVAIANRDVPSVIALSR----QKIAANLEGTSADEVERGGYIVSDNSSENKPEIILIGTGTELSLCEGTAKTL 536 (630)
Q Consensus 461 ~e~~~~l~~a~~~~~~P~~ir~~r----~~~~~~~~~~~~~~~~~G~~~~~~~~~~G~~dvtiva~G~~v~~a~~aa~~L 536 (630)
.+++++|..++++ ++|+++..|| +.. +++|. .++.++.+.+++.+ + | +|+|||+||+.+|.++|+|.+-
T Consensus 189 ~qakglllscird-pnp~iffepk~lyr~a~-edvp~-~dy~iplsqaevir--e-g-~ditlv~wgtqvh~i~e~a~l~ 261 (362)
T KOG0525|consen 189 RQAKGLLLSCIRD-PNPCIFFEPKILYRQAV-EDVPE-GDYMIPLSQAEVIR--E-G-SDITLVAWGTQVHVIMEQACLA 261 (362)
T ss_pred chhhceeeeeccC-CCceEEechHHHHHHhh-hhCCC-CCccccccHHHHhh--c-C-CceEEEEcchhhHHHHHHHHhh
Confidence 9999999999998 9999999875 444 44554 45788999988887 5 8 9999999999999999998755
Q ss_pred H-hcCCceEEEEcccccccCcccHHHHhccCCCCCeeEEEEecCCccccc-c---------c--ccCcce-EEEeccCCC
Q 006816 537 R-QEGRRVRVVSLVCWRLFDRQPAEYKEKVLPSRVVKRVSVEAGSSVGWR-E---------Y--VGVEGK-VIGVEEFGA 602 (630)
Q Consensus 537 ~-~~gi~~~Vi~~~~i~pld~~~~~~~~~v~~~~~~~~v~vEe~~~~g~~-~---------~--~~~~~~-~~g~d~f~~ 602 (630)
+ +.|++++|||+.+|-|||++++. +||.|++ +++|++|.-...|++ + + +.+|+- ..|.|++-+
T Consensus 262 ~ek~giscevidlkti~pwd~d~v~--~sv~ktg-rllisheapvtggfgaeiastv~ercfl~leapisrvcg~dtpfp 338 (362)
T KOG0525|consen 262 KEKLGISCEVIDLKTIIPWDKDTVE--ESVQKTG-RLLISHEAPVTGGFGAEIASTVQERCFLNLEAPISRVCGLDTPFP 338 (362)
T ss_pred HHhcCCceEEEeeecccCccHHHHH--HHHHhhc-eEEEeccCCccCcchHHHHHHHHHHHHhhccCchhhhccCCCCCc
Confidence 4 46999999999999999999988 6899999 565888887777774 1 1 234443 456776544
Q ss_pred CCCHHHHHHHcCCChHHHHHHHHHhhh
Q 006816 603 SGAYLDTFKKYGFTIDNVTKVARSLLS 629 (630)
Q Consensus 603 ~g~~~~l~~~~gl~~~~I~~~i~~~l~ 629 (630)
+- ..-.|-++..+|.++|++.++
T Consensus 339 ~v----fepfy~ptk~ki~daik~~vn 361 (362)
T KOG0525|consen 339 HV----FEPFYMPTKNKILDAIKKTVN 361 (362)
T ss_pred cc----ccccccCcHhHHHHHHHHhcc
Confidence 31 122467789999999998653
No 44
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=99.98 E-value=7.5e-32 Score=257.25 Aligned_cols=162 Identities=40% Similarity=0.541 Sum_probs=138.6
Q ss_pred hHHHHHHHHHHHHHHhCC-CeEEEecCCCCCcccccccccCcCCCCC---CCCCccccccchHHHHHHHHHHHhcCCCCc
Q 006816 317 ATRGYSEKCLNQLAKVLP-GLIGGSADLASSNKAYLLGYHDFSQPDS---PWGRNIRYGVREHAMAGISNGVALHGGGLI 392 (630)
Q Consensus 317 ~~r~a~~~~L~~l~~~~~-~iv~~~aD~~~s~~~~~~~~~~f~~~~~---~p~R~~~~gIaE~~~vg~a~GlA~~G~~~~ 392 (630)
++|++++++|.+++++++ +++++++|++.+++... .+.| +.. +|+||+|+||+|++|+++|+|||+.| ++
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~v~~~~~D~~~~~~~~~--~~~~--~~~~~~~~~R~~~~gIaE~~~vg~a~GlA~~G--~~ 74 (168)
T smart00861 1 ATRKAFGEALAELAERDPERVVVSGADVGGSTGLDR--GGVF--PDTKGLGPGRVIDTGIAEQAMVGFAAGLALAG--LR 74 (168)
T ss_pred CHHHHHHHHHHHHHhhCCCcEEEEehhhCcCcCCCc--CCcc--CCCCCCCCccEEEcCcCHHHHHHHHHHHHHcC--CC
Confidence 368899999999999965 89999999987765442 1223 122 45679999999999999999999999 89
Q ss_pred eEeeehHHHHHhhHHHHHHhcccCCCeEEEEecC-CCCCCCCCCCCCChhhhHHhhcCCCcEEEecCChHHHHHHHHHHH
Q 006816 393 PFAATFLIFSDYMKNSIRLSALSHAGVIYILTHD-SIGLGEDGPTHQPVEQLAGLRAVPRLLAFRPADGNETAGSYRVAI 471 (630)
Q Consensus 393 pv~~~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~-g~~~g~~G~tHq~~~d~a~l~~iP~l~v~~P~d~~e~~~~l~~a~ 471 (630)
||+++|+.|+.|+++|||+.+.++ +++++++++ |...|.+|+|||+++|++++++|||++|++|+|+.|++++|++++
T Consensus 75 pi~~~~~~f~~~a~~~~~~~~~~~-~~~~v~~~~~g~~~g~~G~tH~~~~~~~~~~~iP~~~v~~P~~~~e~~~~l~~a~ 153 (168)
T smart00861 75 PVVAIFFTFFDRAKDQIRSDGAMG-RVPVVVRHDSGGGVGEDGPTHHSQEDEALLRAIPGLKVVAPSDPAEAKGLLRAAI 153 (168)
T ss_pred cEEEeeHHHHHHHHHHHHHhCccc-CCCEEEEecCccccCCCCccccchhHHHHHhcCCCcEEEecCCHHHHHHHHHHHH
Confidence 999999999999999999975555 445555564 677899999999999999999999999999999999999999999
Q ss_pred HcCCCcEEEEEcCC
Q 006816 472 ANRDVPSVIALSRQ 485 (630)
Q Consensus 472 ~~~~~P~~ir~~r~ 485 (630)
+..++|+|||++|+
T Consensus 154 ~~~~~p~~i~~~~~ 167 (168)
T smart00861 154 RRDDGPPVIRLERK 167 (168)
T ss_pred hCCCCCEEEEecCC
Confidence 76568999999875
No 45
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=99.94 E-value=4.8e-26 Score=222.17 Aligned_cols=172 Identities=22% Similarity=0.319 Sum_probs=140.9
Q ss_pred CcChhHHHHHHHHHcCCC-----CCC--HHHHh-hhhh---cCCCCCCCCCCCCcCcccccccccchhHHHHHHHHHHHH
Q 006816 52 AGHGCLLQYVCLHLAGFQ-----SVQ--LEDLK-RLCK---MGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEA 120 (630)
Q Consensus 52 ~gH~~~~~y~~~~l~G~~-----~~~--~~~l~-~~r~---~~s~~~g~p~~~~~~~~~~~~G~lG~~l~~AvG~A~a~k 120 (630)
.||.++++|+.++|.|.. ..+ .+.|+ .||| .++ +++||+ ..+||++.++|+||++++.|+|+|+..
T Consensus 2 ~GHg~~~l~a~l~l~G~~~~~~p~~~~~~~gl~~lf~qfs~~gg-~psH~~-~~tpGi~~~~G~LG~gLs~A~G~a~d~- 78 (227)
T cd02011 2 PGHGGPAVLANLYLEGSYSEFYPEISQDEEGMRKLFKQFSFPGG-IPSHAA-PETPGSIHEGGELGYSLSHAYGAVFDN- 78 (227)
T ss_pred CChHHHHHHHHHHhcCCCccccccccccHHHHHHHHHhcCCCCC-CCCCCc-ccCCCeeecccchhhHHHHHHHhhhcC-
Confidence 699999999999999930 122 22353 3555 555 789998 489999999999999999999998643
Q ss_pred HHhhhhCCCCCccCCceEEEEEcccccCchhH---HHHHHHhHHcCCCcEEEEEECCCCccccccccc--ChhcHHHHHH
Q 006816 121 HLAARFNKPDAVVVDHRTYCIMSDGCAMEGIS---HEAAALAAHWKLNKLTLIYDDNHNTIDGPTSLV--LSEDISARFK 195 (630)
Q Consensus 121 ~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~---~eal~~a~~~~L~~li~i~~~N~~~i~~~~~~~--~~~~~~~~~~ 195 (630)
++.+|+|++|||+++||.. |++.+++..+++++|+.|+++|+|+|++++... ..+++.++|+
T Consensus 79 -------------~d~iv~~vvGDGE~eeG~lA~~W~a~~~~~~~~~~~vLpIld~Ng~~i~~pt~~~~~~~e~l~~~~~ 145 (227)
T cd02011 79 -------------PDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKISNPTILARISHEELEALFR 145 (227)
T ss_pred -------------CCcEEEEEECcCHHHHHhHHHHHHhhhhhcccccCCeEEEEEcCCCcccCCccccccCchhHHHHHH
Confidence 7889999999999999995 999999999999999999999999999999843 3688999999
Q ss_pred hCCCeEEEEeCCCCCHHHHHHHHHHH---------------Hhc--CCCcE--EEEEeecccccC
Q 006816 196 SLGWNTIMVENIHDNLSSFKEALMAA---------------ANE--TKKPT--FIRVKKMRERVN 241 (630)
Q Consensus 196 a~G~~~~~v~dG~~d~~~l~~al~~a---------------~~~--~~~P~--~i~~~t~k~~~g 241 (630)
+|||+++.| ||| |++++.++++++ |+. ..+|. +|.++|.||+-|
T Consensus 146 ~yG~~~~~V-DG~-D~~av~~~~a~a~~~~~~~i~~~~~~~~~~~~~~~~~wp~~~~~~~kg~~~ 208 (227)
T cd02011 146 GYGYEPYFV-EGD-DPETMHQAMAATLDWAIEEIKAIQKRAREGGDASRPRWPMIVLRTPKGWTG 208 (227)
T ss_pred hCCCceEEE-CCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCEEEEeCCCCCCC
Confidence 999999998 999 999887776532 211 12332 566899999833
No 46
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=99.93 E-value=1.9e-24 Score=227.27 Aligned_cols=157 Identities=19% Similarity=0.206 Sum_probs=131.8
Q ss_pred cccccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCC
Q 006816 97 GIEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHN 176 (630)
Q Consensus 97 ~~~~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~ 176 (630)
++....|+||+++|+|+|+|+|.|+++..++.. .++++|+|++|||++++|.+||+|++|+.++|| +++||.||+|
T Consensus 122 ~~~~~~g~lG~~lp~AvGaa~A~k~~~~~~~~~---~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LP-vifvv~NN~~ 197 (341)
T CHL00149 122 NFLGGFAFIGEGIPIALGAAFQSIYRQQVLKEV---QPLRVTACFFGDGTTNNGQFFECLNMAVLWKLP-IIFVVENNQW 197 (341)
T ss_pred CccCCChhhhccHHHHHHHHHHHHHhccccccC---CCCCEEEEEeCCchhhhcHHHHHHHHHhhcCCC-EEEEEEeCCe
Confidence 445677999999999999999998876433321 157899999999999999999999999999998 9999999999
Q ss_pred ccccccccc-ChhcHHHHHHhCCCeEEEEeCCCCCHHHHHH----HHHHHHhcCCCcEEEEEeecccccCcccCCC-CCC
Q 006816 177 TIDGPTSLV-LSEDISARFKSLGWNTIMVENIHDNLSSFKE----ALMAAANETKKPTFIRVKKMRERVNWVDRDQ-FHV 250 (630)
Q Consensus 177 ~i~~~~~~~-~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~----al~~a~~~~~~P~~i~~~t~k~~~g~~~~~~-~~~ 250 (630)
+++.+.... ..+++.+++++||+..+.| ||+ |+.++++ |++++++ .++|++|++.|+|.. ||+..|+ .|+
T Consensus 198 ~i~~~~~~~~~~~d~a~~a~a~G~~~~~V-dg~-d~~av~~a~~~A~~~ar~-~~gP~lIev~tyR~~-gHs~~D~~~YR 273 (341)
T CHL00149 198 AIGMAHHRSTSIPEIHKKAEAFGLPGIEV-DGM-DVLAVREVAKEAVERARQ-GDGPTLIEALTYRFR-GHSLADPDELR 273 (341)
T ss_pred eeecchhheeCCccHHHHHHhCCCCEEEE-eCC-CHHHHHHHHHHHHHHHHh-CCCCEEEEEEEecCC-CcCCCCCccCC
Confidence 998876543 3578999999999999999 999 9987664 4555666 689999999999998 9986554 578
Q ss_pred ChHHHHHHHHh
Q 006816 251 IPMVYREMQIQ 261 (630)
Q Consensus 251 ~~~~~~~~~~~ 261 (630)
++++++.|+++
T Consensus 274 ~~~e~~~~~~~ 284 (341)
T CHL00149 274 SKQEKEAWVAR 284 (341)
T ss_pred CHHHHHHHhcC
Confidence 88888888754
No 47
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=99.93 E-value=2.3e-24 Score=223.42 Aligned_cols=191 Identities=26% Similarity=0.270 Sum_probs=150.7
Q ss_pred CCeEEecCcChhHHHHHHHHHcCCCCCCHHHHhhhhhcCCCCCC---------CCCCCCcCcccccccccchhHHHHHHH
Q 006816 45 RDRFVLSAGHGCLLQYVCLHLAGFQSVQLEDLKRLCKMGSRTPG---------HPENVVTEGIEVTTGPLGQGVANAVGL 115 (630)
Q Consensus 45 ~Dr~v~s~gH~~~~~y~~~~l~G~~~~~~~~l~~~r~~~s~~~g---------~p~~~~~~~~~~~~G~lG~~l~~AvG~ 115 (630)
.|. |+ ..|.+ +++....| ++.+++ +.++.+...| |.. ...+++...+|+||+++|+|+|+
T Consensus 48 ~D~-~~-~~yR~---~~~~la~G---~~~~~~--~~e~~g~~~g~~~G~~g~~h~~-~~~~~~~~~~g~lG~~~p~a~G~ 116 (293)
T cd02000 48 GDW-VF-PTYRD---HGHALARG---VDLKEM--LAELFGKETGPCKGRGGSMHIG-DKEKNFFGGNGIVGGQVPLAAGA 116 (293)
T ss_pred CCE-EE-ecchh---HHHHHHcC---CCHHHH--HHHHcCCCCCCCCCCCCCCCCC-chhcCccccccccccchhHHHHH
Confidence 354 44 37888 44444566 456665 3443333322 322 23468899999999999999999
Q ss_pred HHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCccccccccc-ChhcHHHHH
Q 006816 116 ALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGPTSLV-LSEDISARF 194 (630)
Q Consensus 116 A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~~~~~-~~~~~~~~~ 194 (630)
|+|.|+.+ ++++|+|++|||++++|.++|+|++|++++|| +++|++||+|+++++.+.. ..+++.+++
T Consensus 117 a~a~k~~~----------~~~~vv~~~GDGa~~~g~~~E~l~~A~~~~lP-vi~vv~NN~~~i~~~~~~~~~~~~~~~~a 185 (293)
T cd02000 117 ALALKYRG----------EDRVAVCFFGDGATNEGDFHEALNFAALWKLP-VIFVCENNGYAISTPTSRQTAGTSIADRA 185 (293)
T ss_pred HHHHHHhC----------CCCEEEEEeCCCccccchHHHHHHHHHhhCCC-EEEEEeeCCeeccCCHHHHhCCccHHHHH
Confidence 99998875 78999999999999999999999999999999 8888888999999877643 357899999
Q ss_pred HhCCCeEEEEeCCCCCHHHHHHHHHHHH----hcCCCcEEEEEeecccccCcc-cCCC-CCCChHHHHHHHHh
Q 006816 195 KSLGWNTIMVENIHDNLSSFKEALMAAA----NETKKPTFIRVKKMRERVNWV-DRDQ-FHVIPMVYREMQIQ 261 (630)
Q Consensus 195 ~a~G~~~~~v~dG~~d~~~l~~al~~a~----~~~~~P~~i~~~t~k~~~g~~-~~~~-~~~~~~~~~~~~~~ 261 (630)
++||++++.| ||+ |++++.+++++|. + .++|++|++.|+|.. ||+ ..++ .|+++++++.|.+.
T Consensus 186 ~a~G~~~~~V-dg~-d~~~v~~a~~~A~~~ar~-~~~P~lIev~~~r~~-gHs~~dd~~~Yr~~~e~~~~~~~ 254 (293)
T cd02000 186 AAYGIPGIRV-DGN-DVLAVYEAAKEAVERARA-GGGPTLIEAVTYRLG-GHSTSDDPSRYRTKEEVEEWKKR 254 (293)
T ss_pred HhCCCCEEEE-CCC-CHHHHHHHHHHHHHHHHc-cCCCEEEEEEEeccC-CCCCCCCcccCCCHHHHHHHhcC
Confidence 9999999998 999 9999888777654 4 679999999999998 997 3443 67888877777654
No 48
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=99.92 E-value=1.3e-24 Score=224.24 Aligned_cols=151 Identities=26% Similarity=0.282 Sum_probs=130.6
Q ss_pred cccccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCC
Q 006816 97 GIEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHN 176 (630)
Q Consensus 97 ~~~~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~ 176 (630)
++...+|++|.++|.|+|+|+|.|+++. .+++++|++|||+.++|.+||+||+|+.|+|| +||+|+||+|
T Consensus 130 ~~~~~~~iVg~Q~~~AaG~A~a~k~~~~---------~~~Va~~~~GDGat~qG~FhEalN~A~v~klP-vvf~ieNN~y 199 (358)
T COG1071 130 GFLGGSGIVGTQIPLAAGAALALKYRGT---------KDGVAVAFFGDGATNQGDFHEALNFAAVWKLP-VVFVIENNQY 199 (358)
T ss_pred ccCCCCceecccccHHHHHHHHHHHhCC---------CCcEEEEEecCCccccchHHHHHHHHHHhcCC-EEEEEecCCc
Confidence 6778899999999999999999998861 23499999999999999999999999999999 9999999999
Q ss_pred cccccccccC-hhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHH----HhcCCCcEEEEEeecccccCcccCCC--CC
Q 006816 177 TIDGPTSLVL-SEDISARFKSLGWNTIMVENIHDNLSSFKEALMAA----ANETKKPTFIRVKKMRERVNWVDRDQ--FH 249 (630)
Q Consensus 177 ~i~~~~~~~~-~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a----~~~~~~P~~i~~~t~k~~~g~~~~~~--~~ 249 (630)
+|+.+...+. .+.+..++.+||++.++| ||+ |+.+++++.++| |+ +++|+|||+.|+|.. ||+..|+ -|
T Consensus 200 AiSvp~~~q~~~~~~~~ra~aygipgv~V-DG~-D~~avy~~~~~A~e~AR~-g~GPtLIE~~tYR~~-~HS~sDd~~~Y 275 (358)
T COG1071 200 AISVPRSRQTAAEIIAARAAAYGIPGVRV-DGN-DVLAVYEAAKEAVERARA-GEGPTLIEAVTYRYG-GHSTSDDPSKY 275 (358)
T ss_pred eeecchhhcccchhHHhhhhccCCCeEEE-CCc-CHHHHHHHHHHHHHHHHc-CCCCEEEEEEEeecC-CCCCCCCcccc
Confidence 9997766343 345666999999999999 999 999998887655 54 789999999999998 9987654 46
Q ss_pred CChHHHHHHHHh
Q 006816 250 VIPMVYREMQIQ 261 (630)
Q Consensus 250 ~~~~~~~~~~~~ 261 (630)
+++++.+.|+++
T Consensus 276 RskeE~~~~~~~ 287 (358)
T COG1071 276 RSKEEVEEWKKR 287 (358)
T ss_pred CCHHHHHHHhcc
Confidence 788888888764
No 49
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=99.92 E-value=1.1e-23 Score=226.20 Aligned_cols=157 Identities=19% Similarity=0.225 Sum_probs=132.3
Q ss_pred cccccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCC
Q 006816 97 GIEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHN 176 (630)
Q Consensus 97 ~~~~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~ 176 (630)
++....|+||+++|.|+|+|+|.|+++..++.. .++++|+|++|||++++|.+||+|++|+.++|| +++||+||+|
T Consensus 188 ~~~g~~g~lG~~lP~AvGaA~A~k~~~~~~~~~---~~~~vvv~~~GDGa~~eG~f~EaLn~A~~~~LP-vIfVV~NN~y 263 (433)
T PLN02374 188 NLLGGFAFIGEGIPVATGAAFSSKYRREVLKEE---SCDDVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLW 263 (433)
T ss_pred CCCCCceeccCchhHHHHHHHHHHHhhcccccc---CCCCEEEEEECCCccccChHHHHHHHHHHhCCC-EEEEEeCCCE
Confidence 566777999999999999999999886444322 157899999999999999999999999999999 9999999999
Q ss_pred ccccccccc-ChhcHHHHHHhCCCeEEEEeCCCCCHHHHHH----HHHHHHhcCCCcEEEEEeecccccCcccCCC-CCC
Q 006816 177 TIDGPTSLV-LSEDISARFKSLGWNTIMVENIHDNLSSFKE----ALMAAANETKKPTFIRVKKMRERVNWVDRDQ-FHV 250 (630)
Q Consensus 177 ~i~~~~~~~-~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~----al~~a~~~~~~P~~i~~~t~k~~~g~~~~~~-~~~ 250 (630)
+++.+.... ..+++.+++++|||+++.| ||+ |+.++++ |++++++ .++|++|++.|+|.+ ||+..|+ .|+
T Consensus 264 aig~~~~~~t~~~dia~~A~a~G~~~~~V-DG~-D~~av~~a~~~A~~~Ar~-g~gP~LIe~~tyR~~-GHs~~D~~~YR 339 (433)
T PLN02374 264 AIGMSHLRATSDPEIWKKGPAFGMPGVHV-DGM-DVLKVREVAKEAIERARR-GEGPTLVECETYRFR-GHSLADPDELR 339 (433)
T ss_pred eecceeeeccCCCCHHHHHHhcCCcEEEE-CCC-CHHHHHHHHHHHHHHHHH-cCCCEEEEEEEEecC-CcCCCCccccC
Confidence 988776543 3568999999999999999 999 9998875 4556666 689999999999999 9976554 567
Q ss_pred ChHHHHHHHHh
Q 006816 251 IPMVYREMQIQ 261 (630)
Q Consensus 251 ~~~~~~~~~~~ 261 (630)
++++++.|+++
T Consensus 340 ~~~e~~~~~~~ 350 (433)
T PLN02374 340 DPAEKAHYAAR 350 (433)
T ss_pred CHHHHHHHHcC
Confidence 88888888754
No 50
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=99.92 E-value=1.7e-23 Score=218.44 Aligned_cols=189 Identities=23% Similarity=0.251 Sum_probs=148.0
Q ss_pred EEecCcChhHHHHHHHHHcCCCCCCHHHHhhhhhcCCCCCC---------CCCCCCcCcccccccccchhHHHHHHHHHH
Q 006816 48 FVLSAGHGCLLQYVCLHLAGFQSVQLEDLKRLCKMGSRTPG---------HPENVVTEGIEVTTGPLGQGVANAVGLALA 118 (630)
Q Consensus 48 ~v~s~gH~~~~~y~~~~l~G~~~~~~~~l~~~r~~~s~~~g---------~p~~~~~~~~~~~~G~lG~~l~~AvG~A~a 118 (630)
+|+ ..|...+ +....| ++.+++ +.++.+...| |.. ....++....|+||+++|.|+|+|+|
T Consensus 56 ~~~-~~yR~~~---~~la~G---~~~~~~--~~~~~g~~~g~~~Gr~g~~h~~-~~~~~~~~~~g~~G~~lp~AiGaa~A 125 (315)
T TIGR03182 56 YVI-TSYRDHG---HALARG---VPPKEV--MAELTGRATGCSKGKGGSMHMF-DREKNFYGGHGIVGAQVPLATGLAFA 125 (315)
T ss_pred EEE-echhhHH---HHHHcC---CCHHHH--HHHHcCCCCCCCCCCCCCCCcC-chhhCcccCcCcccccccHHHHHHHH
Confidence 455 4577733 333455 566666 3344333323 221 11246777889999999999999999
Q ss_pred HHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCccccccccc-ChhcHHHHHHhC
Q 006816 119 EAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGPTSLV-LSEDISARFKSL 197 (630)
Q Consensus 119 ~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~~~~~-~~~~~~~~~~a~ 197 (630)
.|+.+ ++++|+|++|||++++|.++|+|++|+.++|| +++||.||+|+++++.+.. ...++.+++++|
T Consensus 126 ~~~~~----------~~~~vv~~~GDGa~~~g~~~ealn~A~~~~lP-vi~vv~NN~yg~s~~~~~~~~~~~~a~~A~a~ 194 (315)
T TIGR03182 126 NKYRG----------NDNVTACFFGDGAANQGQFYESFNMAALWKLP-VIFVIENNLYAMGTSVERSSSVTDLYKRGESF 194 (315)
T ss_pred HHHhC----------CCCEEEEEeCCCcccccHHHHHHHHhhccCcC-EEEEEEcCCccccCCHHHHhCCcCHHHHHHhC
Confidence 98775 78999999999999999999999999999999 8888888899999887643 357899999999
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHH----HhcCCCcEEEEEeecccccCcccCCC-CCCChHHHHHHHHh
Q 006816 198 GWNTIMVENIHDNLSSFKEALMAA----ANETKKPTFIRVKKMRERVNWVDRDQ-FHVIPMVYREMQIQ 261 (630)
Q Consensus 198 G~~~~~v~dG~~d~~~l~~al~~a----~~~~~~P~~i~~~t~k~~~g~~~~~~-~~~~~~~~~~~~~~ 261 (630)
|+++++| ||+ |+.++++++++| ++ .++|++|++.|+|.. ||+..|+ .++++++++.|+++
T Consensus 195 G~~~~~V-dg~-d~~av~~a~~~A~~~ar~-~~gP~lIe~~t~R~~-gHs~~D~~~Yr~~~e~~~~~~~ 259 (315)
T TIGR03182 195 GIPGERV-DGM-DVLAVREAAKEAVERARS-GKGPILLEMKTYRFR-GHSMSDPAKYRSKEEVEEWRKR 259 (315)
T ss_pred CCCEEEE-CCC-CHHHHHHHHHHHHHHHHc-cCCCEEEEEeCCcCC-CCCCCCccccCCHHHHHHHHhc
Confidence 9999998 999 999887776655 44 679999999999998 9976553 57788888888754
No 51
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=99.91 E-value=4.3e-23 Score=213.77 Aligned_cols=149 Identities=32% Similarity=0.416 Sum_probs=124.4
Q ss_pred cccccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCC
Q 006816 97 GIEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHN 176 (630)
Q Consensus 97 ~~~~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~ 176 (630)
++...++++|.++|.|+|+|+|.|+++ .+..++|++|||+..+|.++|+||+|+.++|| +||||+||+|
T Consensus 95 ~~~~~~~~vg~~~p~a~G~A~a~k~~~----------~~~v~v~~~GDga~~qG~~~EalN~A~~~~lP-vifvveNN~~ 163 (300)
T PF00676_consen 95 NILGASSPVGAQVPIAAGVALAIKYRG----------KDGVVVCFFGDGATSQGDFHEALNLAALWKLP-VIFVVENNQY 163 (300)
T ss_dssp TBEEEESSTTTHHHHHHHHHHHHHHTT----------SSEEEEEEEETGGGGSHHHHHHHHHHHHTTTS-EEEEEEEESE
T ss_pred eeeeccccccccCccccchhHhhhhcC----------CceeEEEEecCcccccCccHHHHHHHhhccCC-eEEEEecCCc
Confidence 477889999999999999999998776 78999999999999999999999999999999 8999999999
Q ss_pred ccccccccc-ChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHH----HhcCCCcEEEEEeecccccCcccCCC--CC
Q 006816 177 TIDGPTSLV-LSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAA----ANETKKPTFIRVKKMRERVNWVDRDQ--FH 249 (630)
Q Consensus 177 ~i~~~~~~~-~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a----~~~~~~P~~i~~~t~k~~~g~~~~~~--~~ 249 (630)
+|+++...+ ...++..++++||++.+.| ||+ |+.++++++++| ++ .++|+||++.|+|.. ||+..|. .+
T Consensus 164 aist~~~~~~~~~~~~~~a~~~gip~~~V-DG~-D~~av~~a~~~A~~~~R~-g~gP~lie~~tyR~~-gHs~~Dd~~~y 239 (300)
T PF00676_consen 164 AISTPTEEQTASPDIADRAKGYGIPGIRV-DGN-DVEAVYEAAKEAVEYARA-GKGPVLIEAVTYRLR-GHSESDDPTFY 239 (300)
T ss_dssp ETTEEHHHHCSSSTSGGGGGGTTSEEEEE-ETT-SHHHHHHHHHHHHHHHHT-TT--EEEEEEE--SS--SSTTSCGGGT
T ss_pred ccccCccccccccchhhhhhccCCcEEEE-CCE-eHHHHHHHHHHHHHHHhc-CCCCEEEEEeeccCC-CCCCCCCcccc
Confidence 999998754 3557888999999999999 999 999998887755 54 789999999999998 9987663 45
Q ss_pred CChHHHHHHHH
Q 006816 250 VIPMVYREMQI 260 (630)
Q Consensus 250 ~~~~~~~~~~~ 260 (630)
.++++++.|++
T Consensus 240 r~~~e~~~~~~ 250 (300)
T PF00676_consen 240 RSPEEYEEWWK 250 (300)
T ss_dssp SHHHHHHHHHH
T ss_pred CCHHHHHHHHh
Confidence 64555555443
No 52
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=99.91 E-value=1.3e-22 Score=214.03 Aligned_cols=191 Identities=18% Similarity=0.142 Sum_probs=148.4
Q ss_pred CCeEEecCcChhHHHHHHHHHcCCCCCCHHHHhhhhhcCCCCCCCCCCCCcCcccccccccchhHHHHHHHHHHHHHHhh
Q 006816 45 RDRFVLSAGHGCLLQYVCLHLAGFQSVQLEDLKRLCKMGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEAHLAA 124 (630)
Q Consensus 45 ~Dr~v~s~gH~~~~~y~~~~l~G~~~~~~~~l~~~r~~~s~~~g~p~~~~~~~~~~~~G~lG~~l~~AvG~A~a~k~~~~ 124 (630)
.|. |+ ..|.+ ..+....| ++..++. .+..+...|... ....++...++++|+++|.|+|+|++.|+.+
T Consensus 75 ~D~-~~-~~yR~---h~~~l~~G---~~~~~~~--ae~~g~~~g~~~-~~~~~~~g~~~~vG~~lp~AiGaAla~k~~~- 142 (341)
T TIGR03181 75 DDW-VF-PSYRD---HAAMLARG---VPLVEIL--LYWRGDERGSWD-PEGVNILPPNIPIGTQYLHAAGVAYALKLRG- 142 (341)
T ss_pred CCE-EE-cchhh---HHHHHHcC---CCHHHHH--HHhcCcCcCCCC-chhcCccCCCchHhcchhHHHhHHHHHHhhC-
Confidence 354 44 44777 33434455 5666653 444444434322 2345777888999999999999999998876
Q ss_pred hhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCccccccccc-ChhcHHHHHHhCCCeEEE
Q 006816 125 RFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGPTSLV-LSEDISARFKSLGWNTIM 203 (630)
Q Consensus 125 ~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~~~~~-~~~~~~~~~~a~G~~~~~ 203 (630)
++++|+|++|||++++|.++|+|++|++++|| +++||.||+|+++.+.... ..+++.+++++||++++.
T Consensus 143 ---------~~~~vv~~~GDGa~~~g~~~EaL~tA~~~~LP-vi~Vv~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~ 212 (341)
T TIGR03181 143 ---------EDNVAVTYFGDGGTSEGDFYEALNFAGVFKAP-VVFFVQNNQWAISVPRSKQTAAPTLAQKAIAYGIPGVQ 212 (341)
T ss_pred ---------CCCEEEEEecCCccccChHHHHHHHHhccCCC-EEEEEECCCCccccchhhhhCCcCHHHHHhhCCCCEEE
Confidence 78999999999999999999999999999999 8888889999988765433 357899999999999999
Q ss_pred EeCCCCCHHHHHHHH----HHHHhcCCCcEEEEEeecccccCcccCCC--CCCChHHHHHHHHh
Q 006816 204 VENIHDNLSSFKEAL----MAAANETKKPTFIRVKKMRERVNWVDRDQ--FHVIPMVYREMQIQ 261 (630)
Q Consensus 204 v~dG~~d~~~l~~al----~~a~~~~~~P~~i~~~t~k~~~g~~~~~~--~~~~~~~~~~~~~~ 261 (630)
| ||+ |..++++++ +++++ .++|++|++.|+|.. ||+..|. .++|+++++.|++.
T Consensus 213 V-dg~-d~~av~~a~~~A~~~a~~-~~gP~lIev~t~R~~-gH~~~D~~~~YR~~~e~~~~~~~ 272 (341)
T TIGR03181 213 V-DGN-DVLAVYAVTKEAVERARS-GGGPTLIEAVTYRLG-PHTTADDPTRYRTKEEEEEWRKK 272 (341)
T ss_pred E-CCC-CHHHHHHHHHHHHHHHHc-CCCCEEEEEEeecCC-CCCCCCCCccCCCHHHHHHHhcC
Confidence 8 999 987766554 45565 689999999999998 9986552 67888888777754
No 53
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=99.90 E-value=2.8e-22 Score=211.31 Aligned_cols=187 Identities=16% Similarity=0.164 Sum_probs=143.7
Q ss_pred EecCcChhHHHHHHHHHcCCCCCCHHHHhhhhhcCCCCCCCCCC--------CCcCcccccccccchhHHHHHHHHHHHH
Q 006816 49 VLSAGHGCLLQYVCLHLAGFQSVQLEDLKRLCKMGSRTPGHPEN--------VVTEGIEVTTGPLGQGVANAVGLALAEA 120 (630)
Q Consensus 49 v~s~gH~~~~~y~~~~l~G~~~~~~~~l~~~r~~~s~~~g~p~~--------~~~~~~~~~~G~lG~~l~~AvG~A~a~k 120 (630)
|+ ..|.. ..+....| ++.+++ +.++.+...|.... ....++...++++|+++|.|+|+|+|.|
T Consensus 85 ~~-~~yR~---hg~~la~G---~~~~~~--~ae~~g~~~g~~~GrggsmH~~~~~~~~~~~~~~vG~~~p~A~G~A~A~k 155 (362)
T PLN02269 85 II-TAYRD---HCTHLGRG---GTVLEV--FAELMGRKDGCSRGKGGSMHFYKKDANFYGGHGIVGAQVPLGAGLAFAQK 155 (362)
T ss_pred EE-echhh---HHHHHHcC---CCHHHH--HHHHcCCCCCCCCCCCCcccccchhcCccccCchhhccccHHHHHHHHHH
Confidence 44 34777 44444455 566665 34444443332210 1223677889999999999999999998
Q ss_pred HHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCcccccccccC-hhcHHHHHHhCCC
Q 006816 121 HLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGPTSLVL-SEDISARFKSLGW 199 (630)
Q Consensus 121 ~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~~~~~~-~~~~~~~~~a~G~ 199 (630)
+++ .+.+++|++|||+++||.+||+||+|+.++|| +++||+||+|+++++..... ..++.+ +++++
T Consensus 156 ~~~----------~~~v~v~~~GDGa~~eG~~~Ealn~A~~~~lP-vvfvveNN~~aist~~~~~~~~~~~~~--~~~~~ 222 (362)
T PLN02269 156 YNK----------EENVAFALYGDGAANQGQLFEALNIAALWDLP-VIFVCENNHYGMGTAEWRAAKSPAYYK--RGDYV 222 (362)
T ss_pred HhC----------CCCeEEEEECCCCcccCHHHHHHHHhhccCcC-EEEEEeCCCEeccCchhhhccchHHHH--hhcCC
Confidence 876 67899999999999999999999999999998 99999999999998876443 344543 44678
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHHh--cCCCcEEEEEeecccccCcccCCC--CCCChHHHHHHHH
Q 006816 200 NTIMVENIHDNLSSFKEALMAAAN--ETKKPTFIRVKKMRERVNWVDRDQ--FHVIPMVYREMQI 260 (630)
Q Consensus 200 ~~~~v~dG~~d~~~l~~al~~a~~--~~~~P~~i~~~t~k~~~g~~~~~~--~~~~~~~~~~~~~ 260 (630)
+.++| ||+ |+.++.+++++|.+ +.++|++|++.|+|.+ ||+..|+ .|+++++++.|++
T Consensus 223 p~~~V-DG~-D~~av~~a~~~A~~~aR~~gP~lIe~~tyR~~-gHs~~D~~~~YR~~~E~~~~~~ 284 (362)
T PLN02269 223 PGLKV-DGM-DVLAVKQACKFAKEHALSNGPIVLEMDTYRYH-GHSMSDPGSTYRTRDEISGVRQ 284 (362)
T ss_pred CeEEE-CCC-CHHHHHHHHHHHHHHHHhCCCEEEEEecCcCC-CcCCCCCCcccCCHHHHHHHHh
Confidence 88998 999 99999999887643 1278999999999998 9987664 4678888888864
No 54
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=99.81 E-value=8.3e-19 Score=175.83 Aligned_cols=140 Identities=16% Similarity=0.023 Sum_probs=118.7
Q ss_pred ccccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEccccc-CchhHHHHHHHhHHcCCC--cEEEEEECC
Q 006816 98 IEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCA-MEGISHEAAALAAHWKLN--KLTLIYDDN 174 (630)
Q Consensus 98 ~~~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~-~eG~~~eal~~a~~~~L~--~li~i~~~N 174 (630)
+....+++|.+.|.|+|+|+|.|+++..-+ ..+..++|++|||++ .+|.++|+||+|..+++| -+|+||+||
T Consensus 108 l~~npS~l~~~~pva~G~A~A~k~~~~~~~-----~~~~v~v~~~GDgA~~~qG~~~EalNlA~l~~lp~gg~ifvveNN 182 (265)
T cd02016 108 LAPNPSHLEAVNPVVMGKTRAKQDYRGDGE-----RDKVLPILIHGDAAFAGQGVVYETLNLSNLPGYTTGGTIHIVVNN 182 (265)
T ss_pred ecCCCcccccccCeehhHHHHHHHhcCCcc-----CCCeEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeC
Confidence 445667899999999999999988752100 136789999999997 699999999999999998 389999999
Q ss_pred CCcccccccccC-hhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHH----HhcCCCcEEEEEeecccccCcccCC
Q 006816 175 HNTIDGPTSLVL-SEDISARFKSLGWNTIMVENIHDNLSSFKEALMAA----ANETKKPTFIRVKKMRERVNWVDRD 246 (630)
Q Consensus 175 ~~~i~~~~~~~~-~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a----~~~~~~P~~i~~~t~k~~~g~~~~~ 246 (630)
+|+++++..... ...+.+++++||++++.| ||+ |++++.++.++| ++ .++|++|++.|+|.+ ||+..|
T Consensus 183 q~g~sT~~~~~~~~~~~~~~a~~~gip~~~V-dG~-D~~aV~~a~~~A~~~~r~-g~gp~lIe~~tYR~~-GHse~D 255 (265)
T cd02016 183 QIGFTTDPRDSRSSPYCTDVAKMIGAPIFHV-NGD-DPEAVVRATRLALEYRQK-FKKDVVIDLVCYRRH-GHNELD 255 (265)
T ss_pred CEEEEecHHHhcccccHHHHHeecCCCEEEE-cCC-CHHHHHHHHHHHHHHHHh-cCCCEEEEEEEecCC-CCCCcC
Confidence 999999887553 567889999999999999 999 999999887765 44 689999999999998 997654
No 55
>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=99.80 E-value=3.2e-19 Score=181.42 Aligned_cols=214 Identities=25% Similarity=0.307 Sum_probs=138.7
Q ss_pred HHHHHhhcCCCCCCCcccHHHHHHHHHHHhhccCCCCCCCCCCCeE-EecCcChhHHHHHHHHHcCC-----C--CCCHH
Q 006816 3 IVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRF-VLSAGHGCLLQYVCLHLAGF-----Q--SVQLE 74 (630)
Q Consensus 3 ~~~~~~~~~~GH~g~~ls~~~~~~~L~~~~~~~d~~~~~~~~~Dr~-v~s~gH~~~~~y~~~~l~G~-----~--~~~~~ 74 (630)
..+.++...-||+|++.+..-+++.|-+.+-++| .|++ |...||++|++.|..+|.|. . +.+.+
T Consensus 38 ~~ediKprllGHWGt~PGlnfiyahlNrlI~~~~--------~~~~~v~GpGHg~pai~A~~~LeGs~se~yp~~~~d~~ 109 (379)
T PF09364_consen 38 KPEDIKPRLLGHWGTSPGLNFIYAHLNRLIRKYD--------LDMIYVMGPGHGGPAILANLYLEGSYSEFYPDISQDEE 109 (379)
T ss_dssp -GGGB-SS--S-TTTHHHHHHHHHHHHHHHHHHT--------B-B--EESSGGGHHHHHHHHHHHSHHHHHSTTS-SSHH
T ss_pred CHHHCCcccccccCCCccHHHHHHHHHHHHHhcC--------CceEEEecCCCCchhhhhhhhhcCccccccCCCCCCHH
Confidence 3456677788999999999999998888766664 4544 79999999999999999986 1 13445
Q ss_pred HHhhhhhcCCCC---CCCCCCCCcCcccccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchh
Q 006816 75 DLKRLCKMGSRT---PGHPENVVTEGIEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGI 151 (630)
Q Consensus 75 ~l~~~r~~~s~~---~g~p~~~~~~~~~~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~ 151 (630)
.|.+|.+..|.. ++|.. .++||.....|-||++++.|.|+++-+ ||.+|+|++|||+..+|.
T Consensus 110 Gl~~L~~~FS~PgGipSH~~-p~tPGsIhEGGELGYaLshA~GA~~Dn--------------Pdliv~~vvGDGEaETGp 174 (379)
T PF09364_consen 110 GLRRLFRQFSFPGGIPSHVS-PETPGSIHEGGELGYALSHAFGAVFDN--------------PDLIVACVVGDGEAETGP 174 (379)
T ss_dssp HHHHHHHHBTSTTSB-SSS--TTSTT-S---SSTS-HHHHHHHHHTT---------------TT-EEEEEEETTGGGSHH
T ss_pred HHHHHHHhCCCCCCCccccC-cCCCCccCcCcchhhHHHHHhhcccCC--------------CCeEEEEEecCCcccCCc
Confidence 565543333443 45555 579999999999999999999999987 999999999999999985
Q ss_pred H---HHHHHHhHHcCCCcEEEEEECCCCccccccc--ccChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHH------
Q 006816 152 S---HEAAALAAHWKLNKLTLIYDDNHNTIDGPTS--LVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMA------ 220 (630)
Q Consensus 152 ~---~eal~~a~~~~L~~li~i~~~N~~~i~~~~~--~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~------ 220 (630)
. |.+-.+.--..-..|+.|+.-|+|.|+.++- ....+++.+.|+++||+.+.| ||+ |+.++.+.+..
T Consensus 175 lA~sWh~~kflnP~~dGaVLPILhLNG~KI~~pTil~r~~~~eL~~lf~G~Gy~p~~V-eg~-dp~~~h~~ma~ald~a~ 252 (379)
T PF09364_consen 175 LAASWHSNKFLNPATDGAVLPILHLNGYKISNPTILARMSDEELEALFRGYGYEPIFV-EGD-DPADMHQAMAAALDWAL 252 (379)
T ss_dssp HHHHGGGGGSS-TTTS-EEEEEEEE-SBSSSSB-HHHHS-HHHHHHHHHHTTEEEEEE-E----HHHHHHHHHHHHHHHH
T ss_pred ccccccccceeCcccCceeeceEEecCccccCCeEeeecCHHHHHHHHHhCCCeEEEE-ecC-CHHHHHHHHHHHHHHHH
Confidence 3 3222222222224699999999999999984 345678999999999999998 998 98876554321
Q ss_pred ---------HHhc--CCCcE--EEEEeecccccCc
Q 006816 221 ---------AANE--TKKPT--FIRVKKMRERVNW 242 (630)
Q Consensus 221 ---------a~~~--~~~P~--~i~~~t~k~~~g~ 242 (630)
||.. ..+|. +|.++|.||+ +.
T Consensus 253 ~~I~~iq~~Ar~~~~~~~prwPmivlRtPKGW-tg 286 (379)
T PF09364_consen 253 EEIRAIQKAARSGNPAYRPRWPMIVLRTPKGW-TG 286 (379)
T ss_dssp HHHHHHHHHHTT--SS----EEEEEEE--TTT-TS
T ss_pred HHHHHHHHHHHcCCCCCCCCCcEEEEECCccc-CC
Confidence 1210 11232 5778999999 55
No 56
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=99.80 E-value=3.3e-19 Score=177.25 Aligned_cols=149 Identities=20% Similarity=0.251 Sum_probs=125.8
Q ss_pred cCcccccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECC
Q 006816 95 TEGIEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDN 174 (630)
Q Consensus 95 ~~~~~~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N 174 (630)
++.....+|.+|.++|.+.|+|+|.||++ .+...+++-|||+.++|++||++|+|+.|+|| +|||++||
T Consensus 157 ~k~FyGGnGIVGAQiPLGaGia~A~kY~~----------~~~v~~alYGDGAaNQGQ~fEa~NMA~LW~LP-~IFvCENN 225 (394)
T KOG0225|consen 157 AKNFYGGNGIVGAQIPLGAGIAFAQKYNR----------EDAVCFALYGDGAANQGQVFEAFNMAALWKLP-VIFVCENN 225 (394)
T ss_pred cccccCccceeccCCCccccHHHHHHhcc----------CCceEEEEeccccccchhHHHHhhHHHHhCCC-EEEEEccC
Confidence 45677889999999999999999998876 67899999999999999999999999999999 99999999
Q ss_pred CCccccccccc-ChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhc---CCCcEEEEEeecccccCcccCCC--C
Q 006816 175 HNTIDGPTSLV-LSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANE---TKKPTFIRVKKMRERVNWVDRDQ--F 248 (630)
Q Consensus 175 ~~~i~~~~~~~-~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~---~~~P~~i~~~t~k~~~g~~~~~~--~ 248 (630)
.|++.+..... ..+++.++- .| ++.+.| ||. |+.++.+|.+.|++. +++|.++|+.|+|.+ ||+.+|+ -
T Consensus 226 ~yGMGTs~~Rasa~teyykRG-~y-iPGl~V-dGm-dvlaVr~a~KfA~~~~~~g~GPilmE~~TYRy~-GHSmSDPg~s 300 (394)
T KOG0225|consen 226 HYGMGTSAERASASTEYYKRG-DY-IPGLKV-DGM-DVLAVREATKFAKKYALEGKGPILMEMDTYRYH-GHSMSDPGTS 300 (394)
T ss_pred CCccCcchhhhhcChHHHhcc-CC-CCceEE-CCc-chhhHHHHHHHHHHHHhcCCCCEEEEEeeeeec-ccccCCCCcc
Confidence 99999887643 345665555 34 889998 999 999999998877542 589999999999999 9987775 3
Q ss_pred CCChHHHHHHH
Q 006816 249 HVIPMVYREMQ 259 (630)
Q Consensus 249 ~~~~~~~~~~~ 259 (630)
|+..|+++.-+
T Consensus 301 YRtReEiq~vR 311 (394)
T KOG0225|consen 301 YRTREEIQEVR 311 (394)
T ss_pred cchHHHHHHHH
Confidence 45555555444
No 57
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=99.78 E-value=2.2e-18 Score=164.15 Aligned_cols=146 Identities=23% Similarity=0.304 Sum_probs=116.6
Q ss_pred CCCeEEecCcChhHHHHHHHHHcCCCCCCHHHHhhhhhcCCCCCCCCCCCCcCcccccccccchhHHHHHHHHHHHHHHh
Q 006816 44 NRDRFVLSAGHGCLLQYVCLHLAGFQSVQLEDLKRLCKMGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEAHLA 123 (630)
Q Consensus 44 ~~Dr~v~s~gH~~~~~y~~~~l~G~~~~~~~~l~~~r~~~s~~~g~p~~~~~~~~~~~~G~lG~~l~~AvG~A~a~k~~~ 123 (630)
++|.++.+.|+.....+..+.. .. ..........|+||+++|.|+|++++.
T Consensus 12 ~~~~i~~d~g~~~~~~~~~~~~----------------------~~---~~~~~~~~~~g~~G~~~~~a~Gaa~a~---- 62 (168)
T cd00568 12 EDAIVVNDAGNSAYWAYRYLPL----------------------RR---GRRFLTSTGFGAMGYGLPAAIGAALAA---- 62 (168)
T ss_pred CCCEEEeCCcHHHHHHHHheee----------------------CC---CCcEEeCCCchhhhhhHHHHHHHHHhC----
Confidence 6789999999887444422100 00 112233456799999999999999998
Q ss_pred hhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCccccccc-----------ccChhcHHH
Q 006816 124 ARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGPTS-----------LVLSEDISA 192 (630)
Q Consensus 124 ~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~~~-----------~~~~~~~~~ 192 (630)
++++|+|++|||+++ +.++++++|+++++|.+++|+||+.+++....+ .....|+.+
T Consensus 63 ----------~~~~vv~~~GDG~~~--~~~~~l~ta~~~~~~~~~iv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 130 (168)
T cd00568 63 ----------PDRPVVCIAGDGGFM--MTGQELATAVRYGLPVIVVVFNNGGYGTIRMHQEAFYGGRVSGTDLSNPDFAA 130 (168)
T ss_pred ----------CCCcEEEEEcCcHHh--ccHHHHHHHHHcCCCcEEEEEECCccHHHHHHHHHHcCCCcccccCCCCCHHH
Confidence 788999999999999 588999999999999888888888887755431 123468999
Q ss_pred HHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEee
Q 006816 193 RFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKK 235 (630)
Q Consensus 193 ~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t 235 (630)
++++|||++++| + +++++.++++++++ .++|++|+++|
T Consensus 131 ~a~~~G~~~~~v---~-~~~~l~~a~~~a~~-~~~p~~i~v~~ 168 (168)
T cd00568 131 LAEAYGAKGVRV---E-DPEDLEAALAEALA-AGGPALIEVKT 168 (168)
T ss_pred HHHHCCCeEEEE---C-CHHHHHHHHHHHHh-CCCCEEEEEEC
Confidence 999999999999 4 78999999999987 78999999975
No 58
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=99.77 E-value=3e-18 Score=164.11 Aligned_cols=113 Identities=22% Similarity=0.224 Sum_probs=101.3
Q ss_pred ccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCccccc
Q 006816 102 TGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGP 181 (630)
Q Consensus 102 ~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~ 181 (630)
.|+||+++|+|+|++++. ++++|+|++|||+|+ +.+++|.+|++++||.+++|+|||+|++...
T Consensus 47 ~g~mG~~lp~AiGa~la~--------------~~~~vv~i~GDG~f~--~~~~el~ta~~~~lpv~ivv~NN~~~~~~~~ 110 (172)
T cd02004 47 FGTLGVGLGYAIAAALAR--------------PDKRVVLVEGDGAFG--FSGMELETAVRYNLPIVVVVGNNGGWYQGLD 110 (172)
T ss_pred CCcccchHHHHHHHHHhC--------------CCCeEEEEEcchhhc--CCHHHHHHHHHcCCCEEEEEEECcccccchh
Confidence 488999999999999998 789999999999999 7889999999999999999999999988765
Q ss_pred cccc------------ChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEee
Q 006816 182 TSLV------------LSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKK 235 (630)
Q Consensus 182 ~~~~------------~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t 235 (630)
.+.. ...|+.+++++||+++.+| + +++++.++++++++ .++|++|++.+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v---~-~~~el~~al~~a~~-~~~p~liev~i 171 (172)
T cd02004 111 GQQLSYGLGLPVTTLLPDTRYDLVAEAFGGKGELV---T-TPEELKPALKRALA-SGKPALINVII 171 (172)
T ss_pred hhhhhccCCCceeccCCCCCHHHHHHHCCCeEEEE---C-CHHHHHHHHHHHHH-cCCCEEEEEEc
Confidence 4321 2468999999999999999 4 89999999999987 68999999975
No 59
>KOG1182 consensus Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion]
Probab=99.76 E-value=7e-19 Score=173.06 Aligned_cols=151 Identities=21% Similarity=0.203 Sum_probs=125.8
Q ss_pred ccccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCc
Q 006816 98 IEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNT 177 (630)
Q Consensus 98 ~~~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~ 177 (630)
....+.++..++|.|+|+|+|.|+.. ..++.+||++|||+.+||.++.++|+|+..+.| +||+|-||+|.
T Consensus 188 f~tissplatqlpqAvGaaYa~k~~~---------~nnac~V~yfGdG~aSEGD~HA~~NfAAtle~P-vif~CRNNG~A 257 (432)
T KOG1182|consen 188 FVTISSPLATQLPQAVGAAYALKMRK---------KNNACAVTYFGDGAASEGDAHAAFNFAATLECP-VIFFCRNNGWA 257 (432)
T ss_pred eEEecchhhhccchhhhhhhhhhhcc---------cCCeEEEEEecCCcccccchhhhhhHHHHhCCC-EEEEEcCCCee
Confidence 33456789999999999999998654 146899999999999999999999999999999 99999999999
Q ss_pred ccccccccC-hhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhc---CCCcEEEEEeecccccCcccCC--CCCCC
Q 006816 178 IDGPTSLVL-SEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANE---TKKPTFIRVKKMRERVNWVDRD--QFHVI 251 (630)
Q Consensus 178 i~~~~~~~~-~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~---~~~P~~i~~~t~k~~~g~~~~~--~~~~~ 251 (630)
|++++.++. ...++.+-.+||+..++| ||+ |..+++.|.++||+. ..+|++||+.|+|-. .|+-.+ .-+++
T Consensus 258 ISTptseQyr~DGIa~kG~aYGi~sIRV-DGn-D~lAvYnA~k~ARe~av~e~rPvliEamtYRvG-HHSTSDDSt~YRs 334 (432)
T KOG1182|consen 258 ISTPTSEQYRGDGIAVKGPAYGIRSIRV-DGN-DALAVYNAVKEAREMAVTEQRPVLIEAMTYRVG-HHSTSDDSTAYRS 334 (432)
T ss_pred eccccHHHhcCCceEEeccccceEEEEe-cCc-chHHHHHHHHHHHHHHHhccCchhhhhhhhhhc-cccCCCccccccc
Confidence 999998765 344667778999999999 999 999999999888642 569999999999953 333222 35677
Q ss_pred hHHHHHHHHh
Q 006816 252 PMVYREMQIQ 261 (630)
Q Consensus 252 ~~~~~~~~~~ 261 (630)
.++++.|...
T Consensus 335 adEiq~W~~~ 344 (432)
T KOG1182|consen 335 ADEIQYWNKS 344 (432)
T ss_pred hhhhhhhhcc
Confidence 8888877664
No 60
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=99.75 E-value=7.4e-18 Score=162.21 Aligned_cols=117 Identities=22% Similarity=0.265 Sum_probs=102.7
Q ss_pred cccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhH-HHHHHHhHHcCCCcEEEEEECCCCccc
Q 006816 101 TTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGIS-HEAAALAAHWKLNKLTLIYDDNHNTID 179 (630)
Q Consensus 101 ~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~-~eal~~a~~~~L~~li~i~~~N~~~i~ 179 (630)
..|+||+++|+|+|+++|. ++++|+|++|||+|+ +. +++|.+|+++++|.+++|+|||+|++.
T Consensus 49 ~~g~mG~gl~~AiGa~la~--------------p~~~Vv~i~GDG~f~--~~g~~eL~ta~~~~l~i~vvV~nN~~~g~~ 112 (178)
T cd02008 49 TCTCMGASIGVAIGMAKAS--------------EDKKVVAVIGDSTFF--HSGILGLINAVYNKANITVVILDNRTTAMT 112 (178)
T ss_pred ccccCccHHHHHhhHHhhC--------------CCCCEEEEecChHHh--hccHHHHHHHHHcCCCEEEEEECCcceecc
Confidence 4699999999999999998 789999999999998 66 899999999999999999999999876
Q ss_pred cccccc----------ChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEee
Q 006816 180 GPTSLV----------LSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKK 235 (630)
Q Consensus 180 ~~~~~~----------~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t 235 (630)
+..+.. ...|+.+++++|||+++.|.|++ +++++.++++++.+ .++|++|++++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~-~l~~~~~al~~a~~-~~gp~lI~v~~ 176 (178)
T cd02008 113 GGQPHPGTGKTLTEPTTVIDIEALVRAIGVKRVVVVDPY-DLKAIREELKEALA-VPGVSVIIAKR 176 (178)
T ss_pred CCCCCCCCcccccCCCCccCHHHHHHHCCCCEEEecCcc-CHHHHHHHHHHHHh-CCCCEEEEEeC
Confidence 543211 13689999999999999997888 88888899999987 78999999875
No 61
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=99.74 E-value=3.8e-17 Score=158.25 Aligned_cols=119 Identities=24% Similarity=0.365 Sum_probs=101.8
Q ss_pred ccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCC-cEEEEEECCCCcc
Q 006816 100 VTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLN-KLTLIYDDNHNTI 178 (630)
Q Consensus 100 ~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~-~li~i~~~N~~~i 178 (630)
+++|+||+++|+|+|+++|. ++++|+|++|||+|+ |.+++|.++++++++ .+++|+||++|++
T Consensus 45 ~~~g~mG~~lpaAiGaala~--------------p~~~Vv~i~GDG~f~--m~~~eL~ta~~~~l~~i~ivV~NN~~yg~ 108 (188)
T cd03371 45 LTVGSMGHASQIALGIALAR--------------PDRKVVCIDGDGAAL--MHMGGLATIGGLAPANLIHIVLNNGAHDS 108 (188)
T ss_pred eecCccccHHHHHHHHHHhC--------------CCCcEEEEeCCcHHH--hhccHHHHHHHcCCCCcEEEEEeCchhhc
Confidence 34599999999999999998 789999999999999 889999999999974 6788888888887
Q ss_pred cccccc-cChhcHHHHHHhCCCeE-EEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeecccc
Q 006816 179 DGPTSL-VLSEDISARFKSLGWNT-IMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRER 239 (630)
Q Consensus 179 ~~~~~~-~~~~~~~~~~~a~G~~~-~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~~ 239 (630)
...... ....|+.+++++||+.+ ..| + +++++.++++++.+ .++|++|++.+.++.
T Consensus 109 ~~~~~~~~~~~d~~~~A~a~G~~~~~~v---~-~~~el~~al~~a~~-~~~p~lIev~~~~~~ 166 (188)
T cd03371 109 VGGQPTVSFDVSLPAIAKACGYRAVYEV---P-SLEELVAALAKALA-ADGPAFIEVKVRPGS 166 (188)
T ss_pred cCCcCCCCCCCCHHHHHHHcCCceEEec---C-CHHHHHHHHHHHHh-CCCCEEEEEEecCCC
Confidence 543221 23479999999999997 578 5 89999999999987 789999999998776
No 62
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=99.73 E-value=2.7e-17 Score=160.69 Aligned_cols=119 Identities=20% Similarity=0.199 Sum_probs=102.4
Q ss_pred cccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCcccc
Q 006816 101 TTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDG 180 (630)
Q Consensus 101 ~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~ 180 (630)
..|+||+++|+|+|+++|. ++++|+|++|||+|+ |...+|.+|+++++|.+++|+||++|++..
T Consensus 51 ~~g~mG~~lpaaiGa~la~--------------p~r~vv~i~GDG~f~--m~~~eL~Ta~~~~lpvi~vV~NN~~yg~~~ 114 (196)
T cd02013 51 SFGNCGYALPAIIGAKAAA--------------PDRPVVAIAGDGAWG--MSMMEIMTAVRHKLPVTAVVFRNRQWGAEK 114 (196)
T ss_pred CCcccccHHHHHHHHHHhC--------------CCCcEEEEEcchHHh--ccHHHHHHHHHhCCCeEEEEEECchhHHHH
Confidence 3489999999999999998 889999999999999 889999999999999999999999998765
Q ss_pred cccc-----------cChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHh--cCCCcEEEEEeecccc
Q 006816 181 PTSL-----------VLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAAN--ETKKPTFIRVKKMRER 239 (630)
Q Consensus 181 ~~~~-----------~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~--~~~~P~~i~~~t~k~~ 239 (630)
..+. ....|+.+++++||+++.+| + ++++|.++++++.+ +.++|++|++.+.+..
T Consensus 115 ~~q~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v---~-~~~el~~al~~a~~~~~~~~p~liev~v~~~~ 182 (196)
T cd02013 115 KNQVDFYNNRFVGTELESESFAKIAEACGAKGITV---D-KPEDVGPALQKAIAMMAEGKTTVIEIVCDQEL 182 (196)
T ss_pred HHHHHHcCCCcccccCCCCCHHHHHHHCCCEEEEE---C-CHHHHHHHHHHHHhcCCCCCeEEEEEEeCccc
Confidence 3221 12478999999999999999 5 89999999998864 1478999999986543
No 63
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=99.73 E-value=1.1e-17 Score=164.65 Aligned_cols=118 Identities=23% Similarity=0.320 Sum_probs=103.2
Q ss_pred cccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCcccc
Q 006816 101 TTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDG 180 (630)
Q Consensus 101 ~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~ 180 (630)
..|+||+++|+|+|+++|. ++++|||++|||+|+ |...+|.+|+++++|.+++|+||++|++..
T Consensus 46 ~~gsmG~~lpaAiGa~la~--------------p~~~vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~ 109 (205)
T cd02003 46 GYSCMGYEIAAGLGAKLAK--------------PDREVYVLVGDGSYL--MLHSEIVTAVQEGLKIIIVLFDNHGFGCIN 109 (205)
T ss_pred CcchhhhHHHHHHHHHHhC--------------CCCeEEEEEccchhh--ccHHHHHHHHHcCCCCEEEEEECCccHHHH
Confidence 4589999999999999998 889999999999999 677899999999999999999999998754
Q ss_pred cccc------------------------cChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeec
Q 006816 181 PTSL------------------------VLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKM 236 (630)
Q Consensus 181 ~~~~------------------------~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~ 236 (630)
..+. ....|+.+++++||+++.+| + ++++|.++++++.+ .++|++|++.+.
T Consensus 110 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v---~-~~~el~~al~~a~~-~~gp~lIeV~v~ 184 (205)
T cd02003 110 NLQESTGSGSFGTEFRDRDQESGQLDGALLPVDFAANARSLGARVEKV---K-TIEELKAALAKAKA-SDRTTVIVIKTD 184 (205)
T ss_pred HHHHHhcCccccchhcccccccccccCCCCCCCHHHHHHhCCCEEEEE---C-CHHHHHHHHHHHHh-CCCCEEEEEEee
Confidence 2210 11468999999999999999 6 99999999999987 789999999986
Q ss_pred ccc
Q 006816 237 RER 239 (630)
Q Consensus 237 k~~ 239 (630)
+..
T Consensus 185 ~~~ 187 (205)
T cd02003 185 PKS 187 (205)
T ss_pred ccc
Confidence 654
No 64
>PRK06163 hypothetical protein; Provisional
Probab=99.73 E-value=4.7e-17 Score=158.81 Aligned_cols=136 Identities=18% Similarity=0.221 Sum_probs=109.9
Q ss_pred ccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHc-CCCcEEEEEECCCCcccc
Q 006816 102 TGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHW-KLNKLTLIYDDNHNTIDG 180 (630)
Q Consensus 102 ~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~-~L~~li~i~~~N~~~i~~ 180 (630)
.|+||+++|+|+|+++|. ++++|||++|||+|+ |..++|.+++++ ++|.++||+||++|++..
T Consensus 56 ~GsMG~glpaAiGaalA~--------------p~r~Vv~i~GDG~f~--m~~~eL~Ta~~~~~lpi~ivV~NN~~yg~~~ 119 (202)
T PRK06163 56 LGSMGLAFPIALGVALAQ--------------PKRRVIALEGDGSLL--MQLGALGTIAALAPKNLTIIVMDNGVYQITG 119 (202)
T ss_pred ecccccHHHHHHHHHHhC--------------CCCeEEEEEcchHHH--HHHHHHHHHHHhcCCCeEEEEEcCCchhhcC
Confidence 699999999999999998 889999999999999 999999999987 689899999999999754
Q ss_pred cccc--cChhcHHHHHHhCCCe-EEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeecccccCcccCCCCCCChHHHHH
Q 006816 181 PTSL--VLSEDISARFKSLGWN-TIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRERVNWVDRDQFHVIPMVYRE 257 (630)
Q Consensus 181 ~~~~--~~~~~~~~~~~a~G~~-~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~~~g~~~~~~~~~~~~~~~~ 257 (630)
.... ....|+.+++++||++ .++| . +.++|..+++++.+ .++|++|++.+.... .. +. +...|++..+.
T Consensus 120 ~~~~~~~~~~Df~~lA~a~G~~~~~~v---~-~~~el~~al~~a~~-~~~p~lIeV~i~~~~-~~-~~-~~~~~~~~~~~ 191 (202)
T PRK06163 120 GQPTLTSQTVDVVAIARGAGLENSHWA---A-DEAHFEALVDQALS-GPGPSFIAVRIDDKP-GV-GT-TERDPAQIRER 191 (202)
T ss_pred CccCCCCCCCCHHHHHHHCCCceEEEe---C-CHHHHHHHHHHHHh-CCCCEEEEEEecCCC-CC-CC-CCCCHHHHHHH
Confidence 3221 1347899999999998 6788 5 89999999999987 789999999986543 22 11 12235566666
Q ss_pred HHHh
Q 006816 258 MQIQ 261 (630)
Q Consensus 258 ~~~~ 261 (630)
|++.
T Consensus 192 ~~~~ 195 (202)
T PRK06163 192 FMQG 195 (202)
T ss_pred HHHH
Confidence 6653
No 65
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=99.72 E-value=4.2e-17 Score=153.39 Aligned_cols=114 Identities=17% Similarity=0.249 Sum_probs=100.3
Q ss_pred ccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHc-CCCcEEEEEECCCCcccc
Q 006816 102 TGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHW-KLNKLTLIYDDNHNTIDG 180 (630)
Q Consensus 102 ~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~-~L~~li~i~~~N~~~i~~ 180 (630)
.|+||+++|.|+|+++|. + ++|+|++|||+|+ |..+++.+++++ ++|.+++|+||++|++.+
T Consensus 41 ~gsmG~~lp~AiGa~~a~--------------~-~~Vv~i~GDG~f~--m~~~el~t~~~~~~~~i~~vV~nN~~~g~~~ 103 (157)
T cd02001 41 LGSMGLAGSIGLGLALGL--------------S-RKVIVVDGDGSLL--MNPGVLLTAGEFTPLNLILVVLDNRAYGSTG 103 (157)
T ss_pred ecchhhHHHHHHHHHhcC--------------C-CcEEEEECchHHH--hcccHHHHHHHhcCCCEEEEEEeCccccccC
Confidence 799999999999999986 4 7899999999999 888999999999 599888999999998765
Q ss_pred ccccc-ChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeecc
Q 006816 181 PTSLV-LSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMR 237 (630)
Q Consensus 181 ~~~~~-~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k 237 (630)
..... ...|+.+++++||++++++ + +++++.++++++.+ .++|++|++++.+
T Consensus 104 ~~~~~~~~~d~~~lA~a~G~~~~~v---~-~~~el~~al~~a~~-~~gp~vi~v~i~~ 156 (157)
T cd02001 104 GQPTPSSNVNLEAWAAACGYLVLSA---P-LLGGLGSEFAGLLA-TTGPTLLHAPIAP 156 (157)
T ss_pred CcCCCCCCCCHHHHHHHCCCceEEc---C-CHHHHHHHHHHHHh-CCCCEEEEEEecC
Confidence 33222 2579999999999999999 6 99999999999987 7899999998854
No 66
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=99.71 E-value=4.5e-17 Score=157.94 Aligned_cols=116 Identities=22% Similarity=0.286 Sum_probs=101.4
Q ss_pred ccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCccccc
Q 006816 102 TGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGP 181 (630)
Q Consensus 102 ~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~ 181 (630)
.|+||+++|+|+|+++|. ++++|+|++|||+|+ |.+++|.+|+++++|.+++|+||++|++...
T Consensus 49 ~g~mG~~lp~aiGa~la~--------------~~~~vv~i~GDG~f~--~~~~eL~ta~~~~lpi~ivV~nN~~~~~~~~ 112 (186)
T cd02015 49 LGTMGFGLPAAIGAKVAR--------------PDKTVICIDGDGSFQ--MNIQELATAAQYNLPVKIVILNNGSLGMVRQ 112 (186)
T ss_pred ccchhchHHHHHHHHHhC--------------CCCeEEEEEcccHHh--ccHHHHHHHHHhCCCeEEEEEECCccHHHHH
Confidence 489999999999999998 789999999999999 8899999999999999999999999886542
Q ss_pred cc----------c--cChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeeccc
Q 006816 182 TS----------L--VLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRE 238 (630)
Q Consensus 182 ~~----------~--~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~ 238 (630)
.+ . ....|+.+++++||+++.+| + +.+++.++++++.+ .++|++|+|.+.+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v---~-~~~el~~al~~a~~-~~~p~liev~~~~~ 176 (186)
T cd02015 113 WQELFYEGRYSHTTLDSNPDFVKLAEAYGIKGLRV---E-KPEELEAALKEALA-SDGPVLLDVLVDPE 176 (186)
T ss_pred HHHHHcCCceeeccCCCCCCHHHHHHHCCCceEEe---C-CHHHHHHHHHHHHh-CCCCEEEEEEeCCC
Confidence 11 0 12468999999999999999 4 88999999999987 78999999998643
No 67
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=99.71 E-value=3e-17 Score=161.31 Aligned_cols=119 Identities=20% Similarity=0.234 Sum_probs=102.3
Q ss_pred cccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCcccc
Q 006816 101 TTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDG 180 (630)
Q Consensus 101 ~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~ 180 (630)
..|+||+++|+|+|+++|. ++++|||++|||+|+ |+.++|.+|++++||.+++|+||++|++..
T Consensus 55 ~~GsmG~~lpaaiGa~la~--------------p~~~vv~i~GDG~f~--m~~~eL~Ta~~~~lpviivV~NN~~yg~~~ 118 (202)
T cd02006 55 QAGPLGWTVPAALGVAAAD--------------PDRQVVALSGDYDFQ--FMIEELAVGAQHRIPYIHVLVNNAYLGLIR 118 (202)
T ss_pred CccchhhhhHHHHhHHhhC--------------CCCeEEEEEeChHhh--ccHHHHHHHHHhCCCeEEEEEeCchHHHHH
Confidence 3599999999999999998 899999999999999 999999999999999999999999998754
Q ss_pred cccc-------------c--------ChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHh---cCCCcEEEEEeec
Q 006816 181 PTSL-------------V--------LSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAAN---ETKKPTFIRVKKM 236 (630)
Q Consensus 181 ~~~~-------------~--------~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~---~~~~P~~i~~~t~ 236 (630)
..+. . ...|+.+++++||+++.+| . ++++|.++++++.+ ..++|++|++.+-
T Consensus 119 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v---~-~~~el~~al~~a~~~~~~~~~p~liev~i~ 194 (202)
T cd02006 119 QAQRAFDMDYQVNLAFENINSSELGGYGVDHVKVAEGLGCKAIRV---T-KPEELAAAFEQAKKLMAEHRVPVVVEAILE 194 (202)
T ss_pred HHHHHhcCccccccccccccccccCCCCCCHHHHHHHCCCEEEEE---C-CHHHHHHHHHHHHHhcccCCCcEEEEEEec
Confidence 3211 0 1368999999999999999 5 89999999999873 1579999999885
Q ss_pred ccc
Q 006816 237 RER 239 (630)
Q Consensus 237 k~~ 239 (630)
+..
T Consensus 195 ~~~ 197 (202)
T cd02006 195 RVT 197 (202)
T ss_pred ccc
Confidence 543
No 68
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=99.70 E-value=1.3e-16 Score=153.32 Aligned_cols=116 Identities=17% Similarity=0.175 Sum_probs=102.2
Q ss_pred cccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCcccc
Q 006816 101 TTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDG 180 (630)
Q Consensus 101 ~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~ 180 (630)
..|+||+++|.|+|+++|. ++++|+|++|||+|+ |+.++|.+|+++++|.+++|+||++|++..
T Consensus 46 ~~g~mG~~lp~aiGa~la~--------------~~~~vv~i~GDG~f~--m~~~eL~ta~~~~l~vi~vV~NN~~~g~~~ 109 (177)
T cd02010 46 GLATMGVALPGAIGAKLVY--------------PDRKVVAVSGDGGFM--MNSQELETAVRLKIPLVVLIWNDNGYGLIK 109 (177)
T ss_pred CChhhhhHHHHHHHHHHhC--------------CCCcEEEEEcchHHH--hHHHHHHHHHHHCCCeEEEEEECCcchHHH
Confidence 4589999999999999998 889999999999999 889999999999999999999999998764
Q ss_pred ccc----------ccChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeecc
Q 006816 181 PTS----------LVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMR 237 (630)
Q Consensus 181 ~~~----------~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k 237 (630)
..+ .....|+.+.+++||.++.+| . +++++.++++++.+ .++|++|++.+.+
T Consensus 110 ~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v---~-~~~el~~al~~a~~-~~~p~liev~~~~ 171 (177)
T cd02010 110 WKQEKEYGRDSGVDFGNPDFVKYAESFGAKGYRI---E-SADDLLPVLERALA-ADGVHVIDCPVDY 171 (177)
T ss_pred HHHHHhcCCcccCcCCCCCHHHHHHHCCCEEEEE---C-CHHHHHHHHHHHHh-CCCCEEEEEEecc
Confidence 221 012468999999999999999 5 89999999999997 7899999998843
No 69
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=99.69 E-value=2.9e-16 Score=151.08 Aligned_cols=115 Identities=26% Similarity=0.318 Sum_probs=98.2
Q ss_pred ccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCC-CcEEEEEECCCCcccc
Q 006816 102 TGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKL-NKLTLIYDDNHNTIDG 180 (630)
Q Consensus 102 ~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L-~~li~i~~~N~~~i~~ 180 (630)
.|+||+++|+|+|+++|. +++|+|++|||+|+ |..++|.+++++++ |.+++|+||++|++.+
T Consensus 41 ~gsmG~~lpaAiGa~la~---------------~~~Vv~i~GDG~f~--m~~~el~ta~~~~~~pv~~vV~NN~~yg~~~ 103 (181)
T TIGR03846 41 LGSMGLASSIGLGLALAT---------------DRTVIVIDGDGSLL--MNLGVLPTIAAESPKNLILVILDNGAYGSTG 103 (181)
T ss_pred ccccccHHHHHHHHHHcC---------------CCcEEEEEcchHHH--hhhhHHHHHHHhCCCCeEEEEEeCCcccccc
Confidence 699999999999999986 46799999999999 77899999999994 8888888999998876
Q ss_pred ccccc--ChhcHHHHHHhCCCeEEE-EeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeecccc
Q 006816 181 PTSLV--LSEDISARFKSLGWNTIM-VENIHDNLSSFKEALMAAANETKKPTFIRVKKMRER 239 (630)
Q Consensus 181 ~~~~~--~~~~~~~~~~a~G~~~~~-v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~~ 239 (630)
..... ...|+.+.+++||+++.. | + +++++.++++ +.+ .++|++|+|.+.+..
T Consensus 104 ~q~~~~~~~~d~~~lA~a~G~~~~~~v---~-~~~~l~~al~-a~~-~~~p~li~v~~~~~~ 159 (181)
T TIGR03846 104 NQPTPASRRTDLELVAKAAGIRNVEKV---A-DEEELRDALK-ALA-MKGPTFIHVKVKPGN 159 (181)
T ss_pred CcCCCCCCCCCHHHHHHHCCCCeEEEe---C-CHHHHHHHHH-HHc-CCCCEEEEEEeCCCC
Confidence 32211 256899999999999998 7 5 8999999997 776 689999999986554
No 70
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=99.69 E-value=7.8e-17 Score=155.18 Aligned_cols=112 Identities=29% Similarity=0.296 Sum_probs=97.3
Q ss_pred cccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCcccccc
Q 006816 103 GPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGPT 182 (630)
Q Consensus 103 G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~~ 182 (630)
|+||+++|+|+|+++|. ++++|+|++|||+|+ +..++|.+|+++++|.+++|+||++|++....
T Consensus 49 g~mG~~lp~aiGaala~--------------~~~~vv~i~GDG~f~--~~~~el~ta~~~~~p~~~iV~nN~~~~~~~~~ 112 (178)
T cd02002 49 GGLGWGLPAAVGAALAN--------------PDRKVVAIIGDGSFM--YTIQALWTAARYGLPVTVVILNNRGYGALRSF 112 (178)
T ss_pred ccccchHHHHHHHHhcC--------------CCCeEEEEEcCchhh--ccHHHHHHHHHhCCCeEEEEEcCccHHHHHHH
Confidence 99999999999999998 789999999999999 55689999999999988888888889876432
Q ss_pred cc------------------cChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEee
Q 006816 183 SL------------------VLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKK 235 (630)
Q Consensus 183 ~~------------------~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t 235 (630)
+. ....|+.+++++||+++.+| . +++++.++++++.+ .++|++|++++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v---~-~~~el~~al~~a~~-~~~p~vi~v~v 178 (178)
T cd02002 113 LKRVGPEGPGENAPDGLDLLDPGIDFAAIAKAFGVEAERV---E-TPEELDEALREALA-EGGPALIEVVV 178 (178)
T ss_pred HHHHcCCCcccccccccccCCCCCCHHHHHHHcCCceEEe---C-CHHHHHHHHHHHHh-CCCCEEEEEEC
Confidence 21 12368999999999999999 4 79999999999987 78999999863
No 71
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=99.68 E-value=2.3e-16 Score=152.43 Aligned_cols=118 Identities=21% Similarity=0.276 Sum_probs=101.6
Q ss_pred cccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCcccc
Q 006816 101 TTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDG 180 (630)
Q Consensus 101 ~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~ 180 (630)
..|+||+++|.|+|+++|. ++++|+|++|||+|+ +...+|.+++++++|.+++|+|||+|++..
T Consensus 48 ~~g~mG~~l~~aiGaala~--------------~~~~vv~i~GDG~f~--~~~~el~ta~~~~~p~~ivV~nN~~~~~~~ 111 (183)
T cd02005 48 LWGSIGYSVPAALGAALAA--------------PDRRVILLVGDGSFQ--MTVQELSTMIRYGLNPIIFLINNDGYTIER 111 (183)
T ss_pred chhhHhhhHHHHHHHHHhC--------------CCCeEEEEECCchhh--ccHHHHHHHHHhCCCCEEEEEECCCcEEEE
Confidence 4599999999999999998 789999999999998 777889999999999999999999998754
Q ss_pred cccc-------cChhcHHHHHHhCC----CeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeeccc
Q 006816 181 PTSL-------VLSEDISARFKSLG----WNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRE 238 (630)
Q Consensus 181 ~~~~-------~~~~~~~~~~~a~G----~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~ 238 (630)
..+. ....|+.+.+++|| +++.+| + +.+++.++++++.+..++|++|++.+.+.
T Consensus 112 ~~~~~~~~~~~~~~~d~~~ia~a~G~~~~~~~~~v---~-~~~el~~al~~a~~~~~~p~liev~~~~~ 176 (183)
T cd02005 112 AIHGPEASYNDIANWNYTKLPEVFGGGGGGLSFRV---K-TEGELDEALKDALFNRDKLSLIEVILPKD 176 (183)
T ss_pred EeccCCcCcccCCCCCHHHHHHHhCCCccccEEEe---c-CHHHHHHHHHHHHhcCCCcEEEEEEcCcc
Confidence 3221 12468999999999 689998 6 99999999999875247999999998554
No 72
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=99.68 E-value=1e-15 Score=161.90 Aligned_cols=129 Identities=26% Similarity=0.387 Sum_probs=104.2
Q ss_pred CCCCCCCCCCCcCcccccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcC
Q 006816 84 SRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWK 163 (630)
Q Consensus 84 s~~~g~p~~~~~~~~~~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~ 163 (630)
...+|||.. .++.|+||+++|+|+|+|++. ++++|||+.|||+|+ |..++|.++++++
T Consensus 208 ~~~~~~~~~------f~~~GsMG~a~p~AlG~ala~--------------p~r~Vv~i~GDGsfl--m~~~eL~t~~~~~ 265 (361)
T TIGR03297 208 RIGQGHARD------FLTVGSMGHASQIALGLALAR--------------PDQRVVCLDGDGAAL--MHMGGLATIGTQG 265 (361)
T ss_pred ccccCCCCc------eEeechhhhHHHHHHHHHHHC--------------CCCCEEEEEChHHHH--HHHHHHHHHHHhC
Confidence 445577752 234699999999999999998 789999999999999 8999999999999
Q ss_pred C-CcEEEEEECCCCccccccc-ccChhcHHHHHHhCCC-eEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeecccc
Q 006816 164 L-NKLTLIYDDNHNTIDGPTS-LVLSEDISARFKSLGW-NTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRER 239 (630)
Q Consensus 164 L-~~li~i~~~N~~~i~~~~~-~~~~~~~~~~~~a~G~-~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~~ 239 (630)
+ +.+++|+||+.|+..+... .....|+.+++++||+ .++.| + +.++|.++++++++ .++|++|++++.++.
T Consensus 266 ~~nli~VVlNNg~~~~~g~q~~~~~~~d~~~iA~a~G~~~~~~v---~-~~~eL~~al~~a~~-~~gp~lIeV~v~~g~ 339 (361)
T TIGR03297 266 PANLIHVLFNNGAHDSVGGQPTVSQHLDFAQIAKACGYAKVYEV---S-TLEELETALTAASS-ANGPRLIEVKVRPGS 339 (361)
T ss_pred CCCeEEEEEcCccccccCCcCCCCCCCCHHHHHHHCCCceEEEe---C-CHHHHHHHHHHHHh-CCCcEEEEEEecCCC
Confidence 7 4455666666666544322 2235789999999998 56777 6 99999999999987 789999999997766
No 73
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=99.68 E-value=5.9e-16 Score=148.88 Aligned_cols=115 Identities=25% Similarity=0.327 Sum_probs=99.2
Q ss_pred ccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCC-CcEEEEEECCCCcccc
Q 006816 102 TGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKL-NKLTLIYDDNHNTIDG 180 (630)
Q Consensus 102 ~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L-~~li~i~~~N~~~i~~ 180 (630)
.|+||+++|+|+|+|+|. + ++|+|++|||+|+ |..+++.+++++++ +.+++|+|||+|++.+
T Consensus 41 ~g~mG~~lp~AiGaala~--------------~-~~vv~i~GDG~f~--m~~~el~ta~~~~~~~l~vvV~NN~~~~~~~ 103 (179)
T cd03372 41 LGSMGLASSIGLGLALAQ--------------P-RKVIVIDGDGSLL--MNLGALATIAAEKPKNLIIVVLDNGAYGSTG 103 (179)
T ss_pred ccchhhHHHHHHHHHhcC--------------C-CcEEEEECCcHHH--hCHHHHHHHHHcCCCCEEEEEEcCccccccC
Confidence 699999999999999997 5 7899999999998 77889999999996 5677889999999875
Q ss_pred ccccc--ChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeecccc
Q 006816 181 PTSLV--LSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRER 239 (630)
Q Consensus 181 ~~~~~--~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~~ 239 (630)
..... ...|+.+++++||+++..+ +| +++++.+++++++ ++|++|+++|.+..
T Consensus 104 ~~~~~~~~~~d~~~lA~a~G~~~~~v-~~--~~~el~~al~~a~---~gp~lIev~~~~~~ 158 (179)
T cd03372 104 NQPTHAGKKTDLEAVAKACGLDNVAT-VA--SEEAFEKAVEQAL---DGPSFIHVKIKPGN 158 (179)
T ss_pred CCCCCCCCCCCHHHHHHHcCCCeEEe-cC--CHHHHHHHHHHhc---CCCEEEEEEEcCCC
Confidence 43321 2568999999999999998 64 6999999999887 58999999997766
No 74
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=99.68 E-value=1.1e-16 Score=150.28 Aligned_cols=115 Identities=23% Similarity=0.332 Sum_probs=99.9
Q ss_pred ccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCccc
Q 006816 100 VTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTID 179 (630)
Q Consensus 100 ~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~ 179 (630)
...|+||+++|+|+|+++|. |+++|||++|||+|+ +...+|.+++++++|.+++|+||++|++.
T Consensus 25 ~~~g~mG~~~~~aiGa~~a~--------------p~~~vv~i~GDG~f~--~~~~el~ta~~~~~~v~~vv~nN~~~~~~ 88 (153)
T PF02775_consen 25 GGFGSMGYALPAAIGAALAR--------------PDRPVVAITGDGSFL--MSLQELATAVRYGLPVVIVVLNNGGYGMT 88 (153)
T ss_dssp TTTT-TTTHHHHHHHHHHHS--------------TTSEEEEEEEHHHHH--HHGGGHHHHHHTTSSEEEEEEESSBSHHH
T ss_pred CCccccCCHHHhhhHHHhhc--------------CcceeEEecCCccee--eccchhHHHhhccceEEEEEEeCCcceEe
Confidence 35799999999999999987 899999999999999 88999999999999999999999999875
Q ss_pred ccccc--------------cChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEE
Q 006816 180 GPTSL--------------VLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRV 233 (630)
Q Consensus 180 ~~~~~--------------~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~ 233 (630)
+..+. ....|+.++++++|+++.+| +-. |++++.++++++.+ .++|++|+|
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v-~~~-~~~el~~al~~a~~-~~gp~vIeV 153 (153)
T PF02775_consen 89 GGQQTPFGGGRFSGVDGKTFPNPDFAALAEAFGIKGARV-TTP-DPEELEEALREALE-SGGPAVIEV 153 (153)
T ss_dssp HHHHHHTTSTCHHSTBTTTSTTCGHHHHHHHTTSEEEEE-SCH-SHHHHHHHHHHHHH-SSSEEEEEE
T ss_pred ccccccCcCcccccccccccccCCHHHHHHHcCCcEEEE-ccC-CHHHHHHHHHHHHh-CCCcEEEEc
Confidence 54321 22468999999999999998 544 56999999999997 799999986
No 75
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=99.66 E-value=2.3e-17 Score=149.19 Aligned_cols=110 Identities=23% Similarity=0.326 Sum_probs=92.1
Q ss_pred ccEEEecCCCCCCCcEEEEEeCchHHHHHHHHHHHHhcCCceEEEEcccccccCcccHHHHhccCCCCCeeEEEEecCCc
Q 006816 502 GGYIVSDNSSENKPEIILIGTGTELSLCEGTAKTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLPSRVVKRVSVEAGSS 581 (630)
Q Consensus 502 G~~~~~~~~~~G~~dvtiva~G~~v~~a~~aa~~L~~~gi~~~Vi~~~~i~pld~~~~~~~~~v~~~~~~~~v~vEe~~~ 581 (630)
|++.+.+ + | .|++|||||+|++.|++|++.|+++||+++|||++|++|||++++. +.+.+++ ++ +|+||+..
T Consensus 1 Gk~~~~~--~-g-~di~iia~G~~~~~al~A~~~L~~~Gi~~~vi~~~~i~P~d~~~l~--~~~~~~~-~v-vvvee~~~ 72 (124)
T PF02780_consen 1 GKAEVLR--E-G-ADITIIAYGSMVEEALEAAEELEEEGIKAGVIDLRTIKPFDEEALL--ESLKKTG-RV-VVVEEHYK 72 (124)
T ss_dssp TEEEEEE--S-S-SSEEEEEETTHHHHHHHHHHHHHHTTCEEEEEEEEEEESSBHHHHH--HHSHHHH-HH-HHSETCES
T ss_pred CEEEEEe--C-C-CCEEEEeehHHHHHHHHHHHHHHHcCCceeEEeeEEEecccccchH--HHHHHhc-cc-cccccccc
Confidence 5677777 4 7 9999999999999999999999999999999999999999999886 2333333 55 99999986
Q ss_pred ccc-cc---------ccc---CcceEEEe-ccCCCCCCHHHHHHHcCCChHHH
Q 006816 582 VGW-RE---------YVG---VEGKVIGV-EEFGASGAYLDTFKKYGFTIDNV 620 (630)
Q Consensus 582 ~g~-~~---------~~~---~~~~~~g~-d~f~~~g~~~~l~~~~gl~~~~I 620 (630)
.|+ ++ ... .++.++|. |.|+++| .+++++.+|+|+++|
T Consensus 73 ~gg~g~~i~~~l~~~~~~~~~~~~~~~g~~d~~~~~~-~~~~~~~~gl~~e~I 124 (124)
T PF02780_consen 73 IGGLGSAIAEYLAENGFNDLDAPVKRLGVPDEFIPHG-RAELLEAFGLDAESI 124 (124)
T ss_dssp EEEEHSSHHHHHHHHTTTGEEEEEEEEEE-SSSHHSS-HHHHHHHTTHSHHHH
T ss_pred cccHHHHHHHHHHHhCCccCCCCeEEEEECCCcccCc-HHHHHHHCcCCCCcC
Confidence 654 31 122 46789999 9999999 999999999999987
No 76
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=99.66 E-value=3.5e-16 Score=150.13 Aligned_cols=112 Identities=22% Similarity=0.240 Sum_probs=97.6
Q ss_pred ccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCccccc
Q 006816 102 TGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGP 181 (630)
Q Consensus 102 ~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~ 181 (630)
.|.||+++|+|+|+++|. +++|||++|||+|+ |+.++|.+|+++++|.+++|+||++|++...
T Consensus 50 ~g~mG~~l~~aiGa~la~---------------~~~Vv~i~GDGsf~--m~~~eL~ta~~~~l~v~ivVlNN~~~g~~~~ 112 (175)
T cd02009 50 ASGIDGTLSTALGIALAT---------------DKPTVLLTGDLSFL--HDLNGLLLGKQEPLNLTIVVINNNGGGIFSL 112 (175)
T ss_pred ccchhhHHHHHHHHHhcC---------------CCCEEEEEehHHHH--HhHHHHHhccccCCCeEEEEEECCCCchhee
Confidence 378999999999999985 46799999999999 8899999999999999999999999986443
Q ss_pred ccc---------c----ChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEee
Q 006816 182 TSL---------V----LSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKK 235 (630)
Q Consensus 182 ~~~---------~----~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t 235 (630)
.+. . ...|+.+++++||+++.+| + +++++.++++++++ .++|++|++.+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v---~-~~~el~~al~~a~~-~~~p~lIev~v 174 (175)
T cd02009 113 LPQASFEDEFERLFGTPQGLDFEHLAKAYGLEYRRV---S-SLDELEQALESALA-QDGPHVIEVKT 174 (175)
T ss_pred ccCCcccchhhhhhcCCCCCCHHHHHHHcCCCeeeC---C-CHHHHHHHHHHHHh-CCCCEEEEEeC
Confidence 221 0 1468999999999999999 5 99999999999997 78999999975
No 77
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=99.66 E-value=4.2e-16 Score=150.02 Aligned_cols=116 Identities=17% Similarity=0.228 Sum_probs=99.6
Q ss_pred cccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCcccc
Q 006816 101 TTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDG 180 (630)
Q Consensus 101 ~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~ 180 (630)
..|+||+++|+|+|+++|. ++++|+|++|||+++ +...+|.+++++++|.+++|+||++|++..
T Consensus 49 ~~g~mG~~~~~aiGa~~a~--------------~~~~vv~i~GDG~f~--~~~~el~t~~~~~lp~~~iv~NN~~~~~~~ 112 (178)
T cd02014 49 LLATMGNGLPGAIAAKLAY--------------PDRQVIALSGDGGFA--MLMGDLITAVKYNLPVIVVVFNNSDLGFIK 112 (178)
T ss_pred CCchhhhHHHHHHHHHHhC--------------CCCcEEEEEcchHHH--hhHHHHHHHHHhCCCcEEEEEECCchhHHH
Confidence 3499999999999999987 789999999999999 667889999999999889999999998743
Q ss_pred ccc----------ccChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeecc
Q 006816 181 PTS----------LVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMR 237 (630)
Q Consensus 181 ~~~----------~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k 237 (630)
..+ .....|+.+++++||+++..+ . +++++.++++++++ .++|++|++.+.+
T Consensus 113 ~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v---~-~~~el~~~l~~a~~-~~~p~liev~~~~ 174 (178)
T cd02014 113 WEQEVMGQPEFGVDLPNPDFAKIAEAMGIKGIRV---E-DPDELEAALDEALA-ADGPVVIDVVTDP 174 (178)
T ss_pred HHHHHhcCCceeccCCCCCHHHHHHHCCCeEEEe---C-CHHHHHHHHHHHHh-CCCCEEEEEEeCC
Confidence 211 112468999999999999998 4 88999999999987 7899999998853
No 78
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=99.62 E-value=3e-15 Score=145.82 Aligned_cols=114 Identities=18% Similarity=0.167 Sum_probs=98.5
Q ss_pred cccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccc-cCchhHHHHHHHhHHcCCCcEEEEEECCCCccccc
Q 006816 103 GPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGC-AMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGP 181 (630)
Q Consensus 103 G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~-~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~ 181 (630)
|+||+++|+|+|+++|. |+++|||++|||+ ++ |..++|.+|+++++|.+++|+||+.|++.+.
T Consensus 51 g~mG~glpaAiGa~la~--------------p~r~Vv~i~GDGs~f~--m~~~eL~ta~~~~lpv~iiVlnN~~yg~~~~ 114 (193)
T cd03375 51 TLHGRALAVATGVKLAN--------------PDLTVIVVSGDGDLAA--IGGNHFIHAARRNIDITVIVHNNQIYGLTKG 114 (193)
T ss_pred hhhccHHHHHHHHHHhC--------------CCCeEEEEeccchHhh--ccHHHHHHHHHhCCCeEEEEEcCcccccCCC
Confidence 89999999999999998 8999999999999 56 7789999999999999999999999987653
Q ss_pred ccc-c----------------ChhcHHHHHHhCCCeEE---EEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeecc
Q 006816 182 TSL-V----------------LSEDISARFKSLGWNTI---MVENIHDNLSSFKEALMAAANETKKPTFIRVKKMR 237 (630)
Q Consensus 182 ~~~-~----------------~~~~~~~~~~a~G~~~~---~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k 237 (630)
.+. . ...|+.+.++++|.+++ .+ . +++++.++++++.+ .++|++|++.+.-
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v---~-~~~el~~al~~al~-~~gp~vIev~~~C 185 (193)
T cd03375 115 QASPTTPEGFKTKTTPYGNIEEPFNPLALALAAGATFVARGFS---G-DIKQLKEIIKKAIQ-HKGFSFVEVLSPC 185 (193)
T ss_pred ccCCCCCCCCcccCCCCCCCCCCCCHHHHHHHCCCCEEEEEec---C-CHHHHHHHHHHHHh-cCCCEEEEEECCC
Confidence 321 0 12589999999999985 55 5 89999999999998 7999999998643
No 79
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.60 E-value=2.8e-15 Score=167.36 Aligned_cols=118 Identities=21% Similarity=0.264 Sum_probs=105.4
Q ss_pred ccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCccc
Q 006816 100 VTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTID 179 (630)
Q Consensus 100 ~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~ 179 (630)
...|+||+|+|+|+|++++. |+++|+|++|||+|+ |+.++|.||+++++|.+++|+||+.|++.
T Consensus 405 ~~~GtMG~glPaAIGAkla~--------------P~r~Vv~i~GDG~F~--m~~qEL~Ta~r~~lpv~ivv~nN~~~g~v 468 (550)
T COG0028 405 GGLGTMGFGLPAAIGAKLAA--------------PDRKVVAIAGDGGFM--MNGQELETAVRYGLPVKIVVLNNGGYGMV 468 (550)
T ss_pred CCCccccchHHHHHHHHhhC--------------CCCcEEEEEcccHHh--ccHHHHHHHHHhCCCEEEEEEECCccccc
Confidence 35699999999999999999 899999999999999 99999999999999999999999999987
Q ss_pred ccccccC----------hhc-HHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeeccc
Q 006816 180 GPTSLVL----------SED-ISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRE 238 (630)
Q Consensus 180 ~~~~~~~----------~~~-~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~ 238 (630)
...+... ... +.+++++||++.++| . +.++|.+++++|.+ .++|++|++.+-+.
T Consensus 469 ~~~q~~~~~~~~~~~~~~~~~f~klAea~G~~g~~v---~-~~~el~~al~~al~-~~~p~lidv~id~~ 533 (550)
T COG0028 469 RQWQELFYGGRYSGTDLGNPDFVKLAEAYGAKGIRV---E-TPEELEEALEEALA-SDGPVLIDVVVDPE 533 (550)
T ss_pred hHHHHHhcCCCcceeecCCccHHHHHHHcCCeeEEe---C-CHHHHHHHHHHHHh-CCCCEEEEEEecCc
Confidence 7655322 122 999999999999999 5 89999999999998 89999999998654
No 80
>PRK12474 hypothetical protein; Provisional
Probab=99.59 E-value=4e-15 Score=166.84 Aligned_cols=113 Identities=23% Similarity=0.282 Sum_probs=99.9
Q ss_pred ccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCccccc
Q 006816 102 TGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGP 181 (630)
Q Consensus 102 ~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~ 181 (630)
.|+||+++|+|+|+++|. |+++|+|++|||+|+ |+.++|.||++++||.++||+||++|++...
T Consensus 388 ~gsmG~glpaAiGa~lA~--------------p~r~vv~i~GDG~f~--m~~qEL~Ta~r~~lpv~iiV~NN~~y~~i~~ 451 (518)
T PRK12474 388 GGSIGQGLPLAAGAAVAA--------------PDRKVVCPQGDGGAA--YTMQALWTMARENLDVTVVIFANRSYAILNG 451 (518)
T ss_pred CCccCccHHHHHHHHHHC--------------CCCcEEEEEcCchhc--chHHHHHHHHHHCCCcEEEEEcCCcchHHHH
Confidence 499999999999999998 899999999999999 9999999999999999999999999987542
Q ss_pred cc---------------c-cC--hhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEee
Q 006816 182 TS---------------L-VL--SEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKK 235 (630)
Q Consensus 182 ~~---------------~-~~--~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t 235 (630)
.+ . .. ..|+.+++++||++..+| . +.++|.++++++.+ .++|++|++.+
T Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~rv---~-~~~eL~~al~~a~~-~~~p~liev~~ 518 (518)
T PRK12474 452 ELQRVGAQGAGRNALSMLDLHNPELNWMKIAEGLGVEASRA---T-TAEEFSAQYAAAMA-QRGPRLIEAMI 518 (518)
T ss_pred HHHhhcCCCCCccccccccCCCCCCCHHHHHHHCCCeEEEe---C-CHHHHHHHHHHHHc-CCCCEEEEEEC
Confidence 10 0 01 258999999999999999 5 89999999999987 78999999863
No 81
>PRK07586 hypothetical protein; Validated
Probab=99.57 E-value=6.4e-15 Score=165.24 Aligned_cols=112 Identities=27% Similarity=0.295 Sum_probs=99.4
Q ss_pred ccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCccccc
Q 006816 102 TGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGP 181 (630)
Q Consensus 102 ~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~ 181 (630)
.|+||+++|+|+|+++|. ++++|+|++|||+|+ |+.++|.+|++++||.+++|+||++|++...
T Consensus 384 ~g~mG~~lpaaiGa~lA~--------------p~r~Vv~i~GDGsf~--m~~~EL~Ta~~~~lpv~ivV~NN~~y~~~~~ 447 (514)
T PRK07586 384 GGAIGQGLPLATGAAVAC--------------PDRKVLALQGDGSAM--YTIQALWTQARENLDVTTVIFANRAYAILRG 447 (514)
T ss_pred CcccccHHHHHHHHHHhC--------------CCCeEEEEEechHHH--hHHHHHHHHHHcCCCCEEEEEeCchhHHHHH
Confidence 489999999999999998 899999999999999 9999999999999999999999999987542
Q ss_pred cc----------------cc--ChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEe
Q 006816 182 TS----------------LV--LSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVK 234 (630)
Q Consensus 182 ~~----------------~~--~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~ 234 (630)
.+ .. ...|+.+++++||+++.+| + +.++|.++++++.+ .++|++|++.
T Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V---~-~~~el~~al~~a~~-~~~p~liev~ 513 (514)
T PRK07586 448 ELARVGAGNPGPRALDMLDLDDPDLDWVALAEGMGVPARRV---T-TAEEFADALAAALA-EPGPHLIEAV 513 (514)
T ss_pred HHHHhcCCCCCccccccccCCCCCCCHHHHHHHCCCcEEEe---C-CHHHHHHHHHHHHc-CCCCEEEEEE
Confidence 10 01 1368999999999999999 5 89999999999987 7899999986
No 82
>PRK06154 hypothetical protein; Provisional
Probab=99.57 E-value=1.1e-14 Score=164.75 Aligned_cols=118 Identities=21% Similarity=0.186 Sum_probs=102.6
Q ss_pred ccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCccccc
Q 006816 102 TGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGP 181 (630)
Q Consensus 102 ~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~ 181 (630)
.|+||+++|.|+|+++|. ++++|+|++|||+|+ |+.++|.+|+++|||.++||+||++|++...
T Consensus 430 ~gsmG~glpaaiGa~la~--------------p~r~Vv~i~GDG~f~--m~~~EL~Ta~r~~lpi~~vV~NN~~yg~~~~ 493 (565)
T PRK06154 430 TTQLGYGLGLAMGAKLAR--------------PDALVINLWGDAAFG--MTGMDFETAVRERIPILTILLNNFSMGGYDK 493 (565)
T ss_pred CcccccHHHHHHHHHHhC--------------CCCcEEEEEcchHHh--ccHHHHHHHHHhCCCeEEEEEECCccceeeh
Confidence 489999999999999998 899999999999999 9999999999999999999999999986543
Q ss_pred ccc---------cChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHh--cCCCcEEEEEeecccc
Q 006816 182 TSL---------VLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAAN--ETKKPTFIRVKKMRER 239 (630)
Q Consensus 182 ~~~---------~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~--~~~~P~~i~~~t~k~~ 239 (630)
.+. ....|+.+++++||.++.+| + +.++|.+++++|.+ ..++|++|++.+.+..
T Consensus 494 ~~~~~~~~~~~~~~~~df~~lA~a~G~~g~~V---~-~~~el~~al~~a~~~~~~~~p~lIev~v~~~~ 558 (565)
T PRK06154 494 VMPVSTTKYRATDISGDYAAIARALGGYGERV---E-DPEMLVPALLRALRKVKEGTPALLEVITSEET 558 (565)
T ss_pred hhhhhcCcccccCCCCCHHHHHHHCCCeEEEE---C-CHHHHHHHHHHHHhhccCCCeEEEEEEeChHH
Confidence 211 12468999999999999999 5 89999999999874 1478999999986544
No 83
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=99.57 E-value=6.5e-15 Score=167.33 Aligned_cols=117 Identities=19% Similarity=0.221 Sum_probs=101.3
Q ss_pred ccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCccccc
Q 006816 102 TGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGP 181 (630)
Q Consensus 102 ~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~ 181 (630)
.|+||+++|+|+|+++|. ++++|||++|||+|+ |+.++|.||++++||.++||+||++|++...
T Consensus 417 ~gsmG~glpaaiGa~lA~--------------pdr~Vv~i~GDG~f~--m~~~EL~Ta~r~~lpvv~iV~NN~~yg~i~~ 480 (588)
T TIGR01504 417 AGPLGWTIPAALGVCAAD--------------PKRNVVALSGDYDFQ--FMIEELAVGAQHNIPYIHVLVNNAYLGLIRQ 480 (588)
T ss_pred cccccchHhHHHhhhhhC--------------CCCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCCchHHHHH
Confidence 489999999999999998 899999999999999 8899999999999999999999999986542
Q ss_pred cccc---------------------ChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHh---cCCCcEEEEEeecc
Q 006816 182 TSLV---------------------LSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAAN---ETKKPTFIRVKKMR 237 (630)
Q Consensus 182 ~~~~---------------------~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~---~~~~P~~i~~~t~k 237 (630)
.+.. ...|+.+++++||.++.+| + +.++|.++++++.+ ..++|++|+|.+.+
T Consensus 481 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V---~-~~~eL~~al~~a~~~~~~~~~p~lIeV~i~~ 556 (588)
T TIGR01504 481 AQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRV---F-KPEEIAPAFEQAKALMAEHRVPVVVEVILER 556 (588)
T ss_pred HHHHhcccccceeeccccccccccCCCCCHHHHHHHCCCEEEEE---C-CHHHHHHHHHHHHhhcccCCCcEEEEEEecc
Confidence 2110 1368999999999999999 5 99999999999873 15899999999854
Q ss_pred c
Q 006816 238 E 238 (630)
Q Consensus 238 ~ 238 (630)
.
T Consensus 557 ~ 557 (588)
T TIGR01504 557 V 557 (588)
T ss_pred c
Confidence 3
No 84
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=99.56 E-value=1e-14 Score=164.45 Aligned_cols=117 Identities=20% Similarity=0.232 Sum_probs=103.0
Q ss_pred cccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCcccc
Q 006816 101 TTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDG 180 (630)
Q Consensus 101 ~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~ 180 (630)
..|+||+++|+|+|+++|. ++++|+|++|||+|+ |+.++|.+|++++||.++||+||++|++..
T Consensus 406 ~~g~mG~~lpaaiGa~la~--------------~~~~vv~i~GDGsf~--m~~~eL~Ta~~~~lpi~ivV~NN~~y~~~~ 469 (539)
T TIGR02418 406 GMQTLGVALPWAIGAALVR--------------PNTKVVSVSGDGGFL--FSSMELETAVRLKLNIVHIIWNDNGYNMVE 469 (539)
T ss_pred CccccccHHHHHHHHHHhC--------------CCCcEEEEEcchhhh--chHHHHHHHHHhCCCeEEEEEECCcchHHH
Confidence 3579999999999999998 789999999999999 999999999999999999999999998754
Q ss_pred cccc----------cChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeeccc
Q 006816 181 PTSL----------VLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRE 238 (630)
Q Consensus 181 ~~~~----------~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~ 238 (630)
..+. ....|+.+++++||+++.+| + ++++|.++++++.+ .++|++|++.+.+.
T Consensus 470 ~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V---~-~~~eL~~al~~a~~-~~~p~lIev~v~~~ 532 (539)
T TIGR02418 470 FQEEMKYQRSSGVDFGPIDFVKYAESFGAKGLRV---E-SPDQLEPTLRQAME-VEGPVVVDIPVDYS 532 (539)
T ss_pred HHHHHhcCCcccccCCCCCHHHHHHHCCCeEEEE---C-CHHHHHHHHHHHHh-CCCCEEEEEEecCc
Confidence 2211 12478999999999999999 5 99999999999987 78999999998543
No 85
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=99.56 E-value=1.3e-14 Score=163.66 Aligned_cols=115 Identities=16% Similarity=0.184 Sum_probs=101.6
Q ss_pred cccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCcccc
Q 006816 101 TTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDG 180 (630)
Q Consensus 101 ~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~ 180 (630)
..|+||+++|+|+|+++|. ++++|+|++|||+|+ |+.++|.+|+++++|.++||+||++|++..
T Consensus 402 ~~g~mG~glpaaiGa~la~--------------p~~~vv~i~GDG~f~--m~~~EL~Ta~~~~lpi~~vV~NN~~y~~i~ 465 (539)
T TIGR03393 402 LWGSIGYTLPAAFGAQTAC--------------PNRRVILLIGDGSAQ--LTIQELGSMLRDKQHPIILVLNNEGYTVER 465 (539)
T ss_pred hhhhhhhHHHHHHHHHhcC--------------CCCCeEEEEcCcHHH--hHHHHHHHHHHcCCCCEEEEEeCCceEEEE
Confidence 3499999999999999998 889999999999999 999999999999999999999999998754
Q ss_pred ccc-------ccChhcHHHHHHhCCCe----EEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeec
Q 006816 181 PTS-------LVLSEDISARFKSLGWN----TIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKM 236 (630)
Q Consensus 181 ~~~-------~~~~~~~~~~~~a~G~~----~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~ 236 (630)
..+ .....|+.+++++||.+ +.+| + +.++|.++++++.+ .++|++|++.+.
T Consensus 466 ~~~~~~~~~~~~~~~df~~la~a~G~~~~~~~~~v---~-~~~el~~al~~a~~-~~~p~liev~i~ 527 (539)
T TIGR03393 466 AIHGAEQRYNDIALWNWTHLPQALSLDPQSECWRV---S-EAEQLADVLEKVAA-HERLSLIEVVLP 527 (539)
T ss_pred eecCCCCCcCcCCCCCHHHHHHHcCCCCccceEEe---c-cHHHHHHHHHHHhc-cCCeEEEEEEcC
Confidence 222 11246899999999985 8898 5 99999999999997 789999999874
No 86
>PRK08266 hypothetical protein; Provisional
Probab=99.56 E-value=1.1e-14 Score=164.32 Aligned_cols=117 Identities=24% Similarity=0.315 Sum_probs=102.5
Q ss_pred ccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCccccc
Q 006816 102 TGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGP 181 (630)
Q Consensus 102 ~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~ 181 (630)
.|+||+++|+|+|++++. ++++|+|++|||+|+ |.+++|.+|++++||.+++|+||++|++...
T Consensus 401 ~GsmG~~lp~aiGa~la~--------------p~~~vv~v~GDG~f~--~~~~eL~ta~~~~lpv~ivv~NN~~y~~~~~ 464 (542)
T PRK08266 401 QGTLGYGFPTALGAKVAN--------------PDRPVVSITGDGGFM--FGVQELATAVQHNIGVVTVVFNNNAYGNVRR 464 (542)
T ss_pred CcccccHHHHHHHHHHhC--------------CCCcEEEEEcchhhh--ccHHHHHHHHHhCCCeEEEEEeCCcchHHHH
Confidence 489999999999999987 889999999999999 7789999999999999999999999986432
Q ss_pred cc-----------ccChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeecccc
Q 006816 182 TS-----------LVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRER 239 (630)
Q Consensus 182 ~~-----------~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~~ 239 (630)
.+ .....|+.+++++||.++.+| + +.+++.++++++.+ .++|++|++.|.++.
T Consensus 465 ~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v---~-~~~el~~al~~a~~-~~~p~liev~i~~~~ 528 (542)
T PRK08266 465 DQKRRFGGRVVASDLVNPDFVKLAESFGVAAFRV---D-SPEELRAALEAALA-HGGPVLIEVPVPRGS 528 (542)
T ss_pred HHHHhcCCCcccCCCCCCCHHHHHHHcCCeEEEe---C-CHHHHHHHHHHHHh-CCCcEEEEEEecCCC
Confidence 21 012368999999999999999 5 89999999999987 689999999998775
No 87
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=99.56 E-value=2e-14 Score=163.31 Aligned_cols=118 Identities=16% Similarity=0.195 Sum_probs=103.1
Q ss_pred cccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCcccc
Q 006816 101 TTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDG 180 (630)
Q Consensus 101 ~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~ 180 (630)
..|+||+++|.|+|+++|. ++++|+|++|||+|+ |..++|.+|++++||.++||+||++|++..
T Consensus 406 ~~G~mG~~lpaAiGa~la~--------------p~r~vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~ivV~NN~~~g~i~ 469 (574)
T PRK09124 406 NHGSMANAMPQALGAQAAH--------------PGRQVVALSGDGGFS--MLMGDFLSLVQLKLPVKIVVFNNSVLGFVA 469 (574)
T ss_pred CcccccchHHHHHHHHHhC--------------CCCeEEEEecCcHHh--ccHHHHHHHHHhCCCeEEEEEeCCccccHH
Confidence 4489999999999999998 889999999999999 899999999999999999999999998752
Q ss_pred ccc----------ccChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeecccc
Q 006816 181 PTS----------LVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRER 239 (630)
Q Consensus 181 ~~~----------~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~~ 239 (630)
..+ .....|+.+++++||+++.+| + ++++|.++++++.+ .++|++|+|.+-+..
T Consensus 470 ~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v---~-~~~eL~~al~~a~~-~~~p~lIev~i~~~~ 533 (574)
T PRK09124 470 MEMKAGGYLTDGTDLHNPDFAAIAEACGITGIRV---E-KASELDGALQRAFA-HDGPALVDVVTAKQE 533 (574)
T ss_pred HHHHhcCCccccCcCCCCCHHHHHHHCCCeEEEe---C-CHHHHHHHHHHHHh-CCCCEEEEEEecCcc
Confidence 111 112468999999999999999 5 99999999999987 789999999986543
No 88
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.56 E-value=1.1e-14 Score=165.73 Aligned_cols=116 Identities=16% Similarity=0.205 Sum_probs=102.2
Q ss_pred ccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCccccc
Q 006816 102 TGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGP 181 (630)
Q Consensus 102 ~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~ 181 (630)
.|+||+++|+|+|+++|. |+++|||++|||+|+ |+.++|.+|++++||.++||+||++|++...
T Consensus 429 ~gsmG~glpaaiGa~lA~--------------p~r~Vv~i~GDG~f~--m~~~EL~Ta~r~~lpvi~vV~NN~~y~~i~~ 492 (595)
T PRK09107 429 LGTMGYGLPAALGVQIAH--------------PDALVIDIAGDASIQ--MCIQEMSTAVQYNLPVKIFILNNQYMGMVRQ 492 (595)
T ss_pred chhhhhhHHHHHHHHHhC--------------CCCeEEEEEcCchhh--ccHHHHHHHHHhCCCeEEEEEeCCccHHHHH
Confidence 389999999999999998 899999999999999 9999999999999999999999999987542
Q ss_pred cc---------cc---ChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeeccc
Q 006816 182 TS---------LV---LSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRE 238 (630)
Q Consensus 182 ~~---------~~---~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~ 238 (630)
.+ .. ...|+.+++++||+++.+| . +.++|.++++++.+ .++|++|+|.+.+.
T Consensus 493 ~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v---~-~~~el~~al~~a~~-~~~p~lIeV~i~~~ 556 (595)
T PRK09107 493 WQQLLHGNRLSHSYTEAMPDFVKLAEAYGAVGIRC---E-KPGDLDDAIQEMID-VDKPVIFDCRVANL 556 (595)
T ss_pred HHHHHhCCccccccCCCCCCHHHHHHHCCCeEEEE---C-CHHHHHHHHHHHHh-CCCCEEEEEEecCc
Confidence 11 11 1368999999999999999 5 99999999999987 78999999998643
No 89
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=99.55 E-value=2.2e-14 Score=143.67 Aligned_cols=119 Identities=14% Similarity=0.152 Sum_probs=97.6
Q ss_pred cccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEccccc-CchhHHHHHHHhHHcCCCcEEEEEECCCCccc
Q 006816 101 TTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCA-MEGISHEAAALAAHWKLNKLTLIYDDNHNTID 179 (630)
Q Consensus 101 ~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~-~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~ 179 (630)
..|+||+++|.|+|++++. |+++|||++|||++ + |..++|.+|+++++|.+++|+||..|++.
T Consensus 60 ~~gsmG~GlpaAiGa~~a~--------------p~r~VV~i~GDG~~~~--m~~~eL~ta~~~~~pv~~vVlNN~~yg~t 123 (235)
T cd03376 60 NAAAVASGIEAALKALGRG--------------KDITVVAFAGDGGTAD--IGFQALSGAAERGHDILYICYDNEAYMNT 123 (235)
T ss_pred CHHHHHHHHHHHHHHhccC--------------CCCeEEEEEcCchHHh--hHHHHHHHHHHcCCCeEEEEECCcccccC
Confidence 3479999999999998876 78999999999995 7 88899999999999988888888888842
Q ss_pred cccc----------------------ccChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeecc
Q 006816 180 GPTS----------------------LVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMR 237 (630)
Q Consensus 180 ~~~~----------------------~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k 237 (630)
+.+. .....|+.++++++|++++....-+ +++++.++++++.+ .++|++|++.+.-
T Consensus 124 g~q~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~-~~~el~~al~~a~~-~~gP~lIev~~~C 201 (235)
T cd03376 124 GIQRSGSTPYGAWTTTTPVGKVSFGKKQPKKDLPLIMAAHNIPYVATASVA-YPEDLYKKVKKALS-IEGPAYIHILSPC 201 (235)
T ss_pred CCCCCCCCCCCCEeecCCCCccccccccccCCHHHHHHHcCCcEEEEEcCC-CHHHHHHHHHHHHh-CCCCEEEEEECCC
Confidence 2111 0023589999999999986422447 99999999999987 7899999998644
No 90
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.55 E-value=1.2e-14 Score=165.16 Aligned_cols=118 Identities=14% Similarity=0.220 Sum_probs=102.2
Q ss_pred ccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCccccc
Q 006816 102 TGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGP 181 (630)
Q Consensus 102 ~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~ 181 (630)
.|+||+++|+|+|+++|. ++++|||++|||+|+ |+.++|.+|++++||.++||+||++|++...
T Consensus 436 ~gsmG~glpaaiGa~lA~--------------p~r~Vv~i~GDGsf~--m~~~eL~Ta~r~~lpviivV~NN~~~~~i~~ 499 (587)
T PRK06965 436 LGTMGVGLPYAMGIKMAH--------------PDDDVVCITGEGSIQ--MCIQELSTCLQYDTPVKIISLNNRYLGMVRQ 499 (587)
T ss_pred cccccchHHHHHHHHHhC--------------CCCcEEEEEcchhhh--cCHHHHHHHHHcCCCeEEEEEECCcchHHHH
Confidence 389999999999999998 889999999999999 9999999999999999999999999986542
Q ss_pred cc---------c-c--ChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeecccc
Q 006816 182 TS---------L-V--LSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRER 239 (630)
Q Consensus 182 ~~---------~-~--~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~~ 239 (630)
.+ . . ...|+.+++++||+++.+| + +.++|.+++++|.+..++|++|+|.+.+..
T Consensus 500 ~q~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~v---~-~~~eL~~al~~a~~~~~~p~lieV~i~~~~ 565 (587)
T PRK06965 500 WQEIEYSKRYSHSYMDALPDFVKLAEAYGHVGMRI---E-KTSDVEPALREALRLKDRTVFLDFQTDPTE 565 (587)
T ss_pred HHHHhcCCCccccCCCCCCCHHHHHHHCCCEEEEE---C-CHHHHHHHHHHHHhcCCCcEEEEEEecccc
Confidence 21 1 1 1368999999999999999 5 999999999999762378999999986543
No 91
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.55 E-value=1.2e-14 Score=164.80 Aligned_cols=116 Identities=15% Similarity=0.240 Sum_probs=101.4
Q ss_pred ccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCccccc
Q 006816 102 TGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGP 181 (630)
Q Consensus 102 ~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~ 181 (630)
.|+||+++|+|+|+++|. ++++|+|++|||+|+ |+.++|.+|++++||.++||+||++|++...
T Consensus 420 ~g~mG~glpaaiGa~la~--------------p~~~vv~i~GDG~f~--m~~~EL~Ta~r~~lpv~~vV~NN~~y~~i~~ 483 (572)
T PRK08979 420 LGTMGFGLPAAMGVKFAM--------------PDETVVCVTGDGSIQ--MNIQELSTALQYDIPVKIINLNNRFLGMVKQ 483 (572)
T ss_pred cccccchhhHHHhhhhhC--------------CCCeEEEEEcchHhh--ccHHHHHHHHHcCCCeEEEEEeCCccHHHHH
Confidence 489999999999999998 889999999999999 9999999999999999999999999987542
Q ss_pred cc----------cc--ChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeecc
Q 006816 182 TS----------LV--LSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMR 237 (630)
Q Consensus 182 ~~----------~~--~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k 237 (630)
.+ .. ...|+.+++++||.+..+| + +.++|.++++++.+..++|++|++.+.+
T Consensus 484 ~q~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v---~-~~~eL~~al~~a~~~~~~p~lIev~i~~ 547 (572)
T PRK08979 484 WQDMIYQGRHSHSYMDSVPDFAKIAEAYGHVGIRI---S-DPDELESGLEKALAMKDRLVFVDINVDE 547 (572)
T ss_pred HHHHHhCCcccccCCCCCCCHHHHHHHCCCeEEEE---C-CHHHHHHHHHHHHhcCCCcEEEEEEeCC
Confidence 21 11 2368999999999999999 5 9999999999997623899999998854
No 92
>PRK07524 hypothetical protein; Provisional
Probab=99.55 E-value=2.1e-14 Score=161.82 Aligned_cols=117 Identities=24% Similarity=0.289 Sum_probs=102.8
Q ss_pred ccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCccccc
Q 006816 102 TGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGP 181 (630)
Q Consensus 102 ~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~ 181 (630)
.|+||+++|+|+|+++|. ++++|+|++|||+|+ |..++|.+|++++||.+++|+||++|++...
T Consensus 406 ~g~mG~~lp~aiGa~lA~--------------p~~~vv~i~GDG~f~--~~~~el~ta~~~~lpi~~vV~NN~~~g~i~~ 469 (535)
T PRK07524 406 YGTLGYGLPAAIGAALGA--------------PERPVVCLVGDGGLQ--FTLPELASAVEADLPLIVLLWNNDGYGEIRR 469 (535)
T ss_pred cccccchHHHHHHHHHhC--------------CCCcEEEEEcchHHh--hhHHHHHHHHHhCCCeEEEEEECCchHHHHH
Confidence 499999999999999998 899999999999999 8889999999999999999999999985432
Q ss_pred cc----------ccChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeecccc
Q 006816 182 TS----------LVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRER 239 (630)
Q Consensus 182 ~~----------~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~~ 239 (630)
.+ .....|+.+++++||+++.+| . +.++|.++++++.+ .++|++|+|.+.+..
T Consensus 470 ~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v---~-~~~el~~al~~a~~-~~~p~liev~~~~~~ 532 (535)
T PRK07524 470 YMVARDIEPVGVDPYTPDFIALARAFGCAAERV---A-DLEQLQAALRAAFA-RPGPTLIEVDQACWF 532 (535)
T ss_pred HHHHhcCCccccCCCCCCHHHHHHHCCCcEEEe---C-CHHHHHHHHHHHHh-CCCCEEEEEECCccc
Confidence 11 112468999999999999999 5 89999999999998 799999999987754
No 93
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=99.54 E-value=1.6e-14 Score=163.13 Aligned_cols=116 Identities=18% Similarity=0.244 Sum_probs=102.5
Q ss_pred cccccchhHHHHHHHHHHHHHHhhhhCCCCCccC-CceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCccc
Q 006816 101 TTGPLGQGVANAVGLALAEAHLAARFNKPDAVVV-DHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTID 179 (630)
Q Consensus 101 ~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~-~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~ 179 (630)
..|+||+++|.|+|+++|. + +++|+|++|||+|+ |..++|.+|++++||.+++|+||++|++.
T Consensus 394 ~~g~mG~glpaaiGa~la~--------------p~~~~Vv~i~GDGsf~--~~~~eL~Ta~~~~lpi~ivV~NN~~~g~i 457 (549)
T PRK06457 394 WLGSMGIGVPGSVGASFAV--------------ENKRQVISFVGDGGFT--MTMMELITAKKYDLPVKIIIYNNSKLGMI 457 (549)
T ss_pred CcchhhhhHHHHHHHHhcC--------------CCCCeEEEEEcccHHh--hhHHHHHHHHHHCCCeEEEEEECCccchH
Confidence 3599999999999999998 7 89999999999999 99999999999999999999999999875
Q ss_pred cccc----------ccChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeecc
Q 006816 180 GPTS----------LVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMR 237 (630)
Q Consensus 180 ~~~~----------~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k 237 (630)
...+ .....|+.+++++||.++.+| + ++++|.++++++.+ .++|++|+|.+-+
T Consensus 458 ~~~q~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v---~-~~~el~~al~~a~~-~~~p~lIeV~i~~ 520 (549)
T PRK06457 458 KFEQEVMGYPEWGVDLYNPDFTKIAESIGFKGFRL---E-EPKEAEEIIEEFLN-TKGPAVLDAIVDP 520 (549)
T ss_pred HHHHHHhcCCcccccCCCCCHHHHHHHCCCeEEEe---C-CHHHHHHHHHHHHh-CCCCEEEEEEeCc
Confidence 3211 112468999999999999999 5 99999999999987 7899999999854
No 94
>PRK05858 hypothetical protein; Provisional
Probab=99.54 E-value=1.9e-14 Score=162.40 Aligned_cols=116 Identities=17% Similarity=0.151 Sum_probs=102.7
Q ss_pred ccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCccccc
Q 006816 102 TGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGP 181 (630)
Q Consensus 102 ~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~ 181 (630)
.|+||+++|+|+|+++|. ++++|+|++|||+|+ |+.++|.+|++++||.++||+||+.|++...
T Consensus 406 ~gsmG~~lp~aiGa~la~--------------p~r~vv~i~GDG~f~--~~~~eL~Ta~~~~lpi~ivV~NN~~y~~~~~ 469 (542)
T PRK05858 406 FGCLGTGPGYALAARLAR--------------PSRQVVLLQGDGAFG--FSLMDVDTLVRHNLPVVSVIGNNGIWGLEKH 469 (542)
T ss_pred ccccccchhHHHHHHHhC--------------CCCcEEEEEcCchhc--CcHHHHHHHHHcCCCEEEEEEeCCchhhHHH
Confidence 489999999999999998 899999999999999 8999999999999999999999999987542
Q ss_pred ccc----------c-ChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeeccc
Q 006816 182 TSL----------V-LSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRE 238 (630)
Q Consensus 182 ~~~----------~-~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~ 238 (630)
.+. . ...|+.+++++||.++.+| . ++++|.++++++.+ .++|++|++.+.+.
T Consensus 470 ~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v---~-~~~eL~~al~~a~~-~~~p~lIev~~~~~ 532 (542)
T PRK05858 470 PMEALYGYDVAADLRPGTRYDEVVRALGGHGELV---T-VPAELGPALERAFA-SGVPYLVNVLTDPS 532 (542)
T ss_pred HHHHhcCCccccccCCCCCHHHHHHHCCCeEEEe---C-CHHHHHHHHHHHHh-CCCcEEEEEEECCC
Confidence 211 1 2478999999999999999 5 99999999999987 78999999998543
No 95
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=99.54 E-value=1.2e-11 Score=139.09 Aligned_cols=460 Identities=15% Similarity=0.105 Sum_probs=271.4
Q ss_pred hhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEccccc-CchhHHHHHHHhHHcCCC--cEEEEEECCCCccccccc
Q 006816 107 QGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCA-MEGISHEAAALAAHWKLN--KLTLIYDDNHNTIDGPTS 183 (630)
Q Consensus 107 ~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~-~eG~~~eal~~a~~~~L~--~li~i~~~N~~~i~~~~~ 183 (630)
.-=|..-|+.-|..-. +++ |-....-..+++-||++| .+|.++|.||++..++++ -.|+||.||.++..+...
T Consensus 623 avdpVleGivRakQd~---l~~-g~~~~~vlpi~~hGdaafagQGvV~Etlnla~l~~y~tGGtIhvivNNqiGftT~p~ 698 (1228)
T PRK12270 623 AVDPVLEGIVRAKQDR---LDK-GEEGFTVLPILLHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVVNNQVGFTTAPE 698 (1228)
T ss_pred hcchHhhhhhhhhhhh---hcc-cccCCceeEEEEeccccccCCchHHHHHHHHhccCCCCCCeEEEEEecCcccccCcc
Confidence 3347777888775322 221 101123467788999996 679999999999999987 378888999999987765
Q ss_pred ccC-hhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHh---cCCCcEEEEEeecccccCcccCCC-CCCC-------
Q 006816 184 LVL-SEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAAN---ETKKPTFIRVKKMRERVNWVDRDQ-FHVI------- 251 (630)
Q Consensus 184 ~~~-~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~---~~~~P~~i~~~t~k~~~g~~~~~~-~~~~------- 251 (630)
... ..-...++++++++++.| ||+ |++++.++.+.|.+ ..++|++|++.|+|.+ ||...|. -...
T Consensus 699 ~~Rss~y~td~ak~~~~PifhV-NGd-DpeAv~~va~lA~~yr~~f~~dVvIdlvcYRrr-GHNEgDdPSmtqP~mY~~i 775 (1228)
T PRK12270 699 SSRSSEYATDVAKMIQAPIFHV-NGD-DPEAVVRVARLAFEYRQRFHKDVVIDLVCYRRR-GHNEGDDPSMTQPLMYDLI 775 (1228)
T ss_pred ccccchhhHHHHhhcCCCEEeE-CCC-CHHHHHHHHHHHHHHHHHcCCCeEEEEEEEeec-CCCCCCCcccCCchhhhhh
Confidence 332 233456777899999999 999 99999998876643 2689999999999998 9953321 1111
Q ss_pred ---hHHHHHHHHhh-hhchhHHHHHHHHHHhhhhcCCchhHhHHHHhc------------CCCCCCccc-----------
Q 006816 252 ---PMVYREMQIQT-DHGERLEKEWCSKVYNYRSKYPHEGAELDLLLN------------GGLLPGWEN----------- 304 (630)
Q Consensus 252 ---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~p~~~~~----------- 304 (630)
..+.+.|.+.+ .+|..+.++-+..+..|.......-.+...... ...|..+..
T Consensus 776 ~~~~svrk~yte~Ligrgdit~ee~e~~l~dy~~~Le~~f~e~re~~~~~~~~~~~~~~~~~~~~~~~Tav~~~~l~~i~ 855 (1228)
T PRK12270 776 DAKRSVRKLYTEALIGRGDITVEEAEQALRDYQGQLERVFNEVREAEKKPPEPPESVESDQGPPAGVDTAVSAEVLERIG 855 (1228)
T ss_pred hhcchHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCccccccCCCCCCCCCCHHHHHHHH
Confidence 12334444432 445444443332222211000000000000000 000000100
Q ss_pred ----cCCC-CCCC---------------CCCchHHHHHHHHHH--HHHHhCCCeEEEecCCCCCccccc-------cccc
Q 006816 305 ----ALPK-WSTS---------------DPLDATRGYSEKCLN--QLAKVLPGLIGGSADLASSNKAYL-------LGYH 355 (630)
Q Consensus 305 ----~~~~-~~~~---------------~~~~~~r~a~~~~L~--~l~~~~~~iv~~~aD~~~s~~~~~-------~~~~ 355 (630)
.+|+ |..- ...+.. +|++.|. .|+.+...|.+-+.|...++++-- +...
T Consensus 856 da~~~~PegFt~Hpkl~~~l~~R~~m~~~g~iDW--a~gEllAfGsLl~eG~~VRL~GQDsrRGTF~QRHavl~D~~tg~ 933 (1228)
T PRK12270 856 DAHVNLPEGFTVHPKLKPLLEKRREMAREGGIDW--AFGELLAFGSLLLEGTPVRLSGQDSRRGTFSQRHAVLIDRETGE 933 (1228)
T ss_pred HHhccCCCCCccChhhHHHHHHHHHHHhcCCccH--HHHHHHHHHHHHhcCceeeeeccccCCcceeeeeEEEecCCCCc
Confidence 0111 1000 011111 4555444 556666778888899766554310 0001
Q ss_pred CcCCC----CCCCCC--ccccccchHHHHHHHHHHHhcCCCCceEee-ehHHHH---HhhHHHHHHhc----ccCCCeEE
Q 006816 356 DFSQP----DSPWGR--NIRYGVREHAMAGISNGVALHGGGLIPFAA-TFLIFS---DYMKNSIRLSA----LSHAGVIY 421 (630)
Q Consensus 356 ~f~~~----~~~p~R--~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~-~~~~F~---~~a~dqi~~~a----~~~~pv~~ 421 (630)
+| .+ ..-.+| +.|+.++|-+.+|+=-|++...+--..+.+ .|.+|. |-..|+..-++ -|...|++
T Consensus 934 e~-~Pl~~l~~~q~~f~vydS~LSEyAa~GFEYGYSv~~pdaLVlWEAQFGDF~NGAQtiIDefIss~e~KWgQ~S~vvl 1012 (1228)
T PRK12270 934 EY-TPLQNLSDDQGKFLVYDSLLSEYAAMGFEYGYSVERPDALVLWEAQFGDFANGAQTIIDEFISSGEAKWGQRSGVVL 1012 (1228)
T ss_pred cc-CcHhhcCCCcceEEEecchhhHHHhhccceeeecCCCcceeeehhhhcccccchHHHHHHHHhhhHhhhccccceEE
Confidence 11 11 011244 469999999999999999998733455554 699998 56778855443 35677888
Q ss_pred EEecCCCCCCCCCCCCCChhhhHH--hhcCCCcEEEecCChHHHHHHHH-HHHHcCCCcEEEEEcCCCcccccC-CCccc
Q 006816 422 ILTHDSIGLGEDGPTHQPVEQLAG--LRAVPRLLAFRPADGNETAGSYR-VAIANRDVPSVIALSRQKIAANLE-GTSAD 497 (630)
Q Consensus 422 v~~~~g~~~g~~G~tHq~~~d~a~--l~~iP~l~v~~P~d~~e~~~~l~-~a~~~~~~P~~ir~~r~~~~~~~~-~~~~~ 497 (630)
.. +.|+. | .||-|.|---.-+ |.+=.||+|..|+++.....+|+ +++.....|.++..||.-+ ..-. .+..+
T Consensus 1013 LL-PHGyE-G-QGPdHSSaRiERfLqlcAe~nm~Va~psTPA~yFHLLRrqa~~~~~rPLvVfTPKSmL-R~KaA~S~ve 1088 (1228)
T PRK12270 1013 LL-PHGYE-G-QGPDHSSARIERFLQLCAEGNMTVAQPSTPANYFHLLRRQALSGPRRPLVVFTPKSML-RLKAAVSDVE 1088 (1228)
T ss_pred Ec-cCCcC-C-CCCCcchHHHHHHHHhhccCCeEEEccCChHHHHHHHHHHhhcCCCCCeEEEChHHhh-cchhhcCCHH
Confidence 76 44442 3 5888976543344 55778999999999999999997 4666667899999998654 2100 11233
Q ss_pred ccccccEEEe-c-CC-CCC-CCcEEEEEeCchHHHHHHHHHHHHhcCCceEEEEcccccccCcccHHHHhccC--CCCCe
Q 006816 498 EVERGGYIVS-D-NS-SEN-KPEIILIGTGTELSLCEGTAKTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVL--PSRVV 571 (630)
Q Consensus 498 ~~~~G~~~~~-~-~~-~~G-~~dvtiva~G~~v~~a~~aa~~L~~~gi~~~Vi~~~~i~pld~~~~~~~~~v~--~~~~~ 571 (630)
.+.-|+++-+ . .. .++ +-+=+|+++|-.....++..+ +...-++-||-+-.+.||+.+.+. +.+- .....
T Consensus 1089 dFT~g~F~pVi~D~~~~~~~~V~RVlLcSGKvYYdL~a~R~--k~~~~d~AIvRvEQLyP~p~~~l~--~~l~~ypna~e 1164 (1228)
T PRK12270 1089 DFTEGKFRPVIDDPTVDDGAKVRRVLLCSGKLYYDLAARRE--KDGRDDTAIVRVEQLYPLPRAELR--EALARYPNATE 1164 (1228)
T ss_pred HhccCCceecCCCCCCCCccceeEEEEEcchhHHHHHHHHH--hcCCCceEEEEhhhhCCCCHHHHH--HHHHhCCCcce
Confidence 4555665432 1 00 001 023457888987765543322 233456999999999999987654 1121 11224
Q ss_pred eEEEEecCCccc-c
Q 006816 572 KRVSVEAGSSVG-W 584 (630)
Q Consensus 572 ~~v~vEe~~~~g-~ 584 (630)
++.+-||-...| |
T Consensus 1165 ~~wvQeEP~NqGaw 1178 (1228)
T PRK12270 1165 VVWVQEEPANQGAW 1178 (1228)
T ss_pred eEEeccCcccCCCc
Confidence 557777766655 5
No 96
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=99.54 E-value=4.2e-14 Score=160.49 Aligned_cols=117 Identities=15% Similarity=0.200 Sum_probs=102.6
Q ss_pred cccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCcccc
Q 006816 101 TTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDG 180 (630)
Q Consensus 101 ~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~ 180 (630)
..|+||+++|+|+|+++|. ++++|+|++|||+|+ |...+|.+|+++++|.++||+||++|++..
T Consensus 406 ~~gsmG~~~paAiGa~la~--------------p~~~vv~i~GDGsf~--~~~~el~Ta~~~~lpv~~vV~NN~~~g~i~ 469 (578)
T PRK06546 406 RHGSMANALPHAIGAQLAD--------------PGRQVISMSGDGGLS--MLLGELLTVKLYDLPVKVVVFNNSTLGMVK 469 (578)
T ss_pred CcccccchhHHHHHHHHhC--------------CCCcEEEEEcCchHh--hhHHHHHHHHHhCCCeEEEEEECCccccHH
Confidence 3589999999999999998 889999999999999 888999999999999999999999998753
Q ss_pred ccc----------ccChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeeccc
Q 006816 181 PTS----------LVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRE 238 (630)
Q Consensus 181 ~~~----------~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~ 238 (630)
..+ .....|+.+++++||+++.+| + ++++|.++++++.+ .++|++|++.+-+.
T Consensus 470 ~~q~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v---~-~~~el~~al~~a~~-~~gp~lIev~~~~~ 532 (578)
T PRK06546 470 LEMLVDGLPDFGTDHPPVDYAAIAAALGIHAVRV---E-DPKDVRGALREAFA-HPGPALVDVVTDPN 532 (578)
T ss_pred HHHHhcCCCcccccCCCCCHHHHHHHCCCeeEEe---C-CHHHHHHHHHHHHh-CCCCEEEEEEeCCC
Confidence 111 112468999999999999999 5 99999999999987 78999999998654
No 97
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=99.54 E-value=1.9e-14 Score=163.48 Aligned_cols=116 Identities=22% Similarity=0.271 Sum_probs=102.9
Q ss_pred ccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCccccc
Q 006816 102 TGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGP 181 (630)
Q Consensus 102 ~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~ 181 (630)
.|+||+++|+|+|+++|. ++++|+|++|||+|+ |+.++|.+|++++||.++||+||++|++...
T Consensus 420 ~g~mG~glpaAiGa~la~--------------p~~~vv~i~GDG~f~--m~~~eL~Ta~~~~l~i~ivV~NN~~yg~i~~ 483 (572)
T PRK06456 420 MGTMGFGLPAAMGAKLAR--------------PDKVVVDLDGDGSFL--MTGTNLATAVDEHIPVISVIFDNRTLGLVRQ 483 (572)
T ss_pred cccccchhHHHHHHHHhC--------------CCCeEEEEEccchHh--cchHHHHHHHHhCCCeEEEEEECCchHHHHH
Confidence 499999999999999998 789999999999999 8899999999999999999999999987643
Q ss_pred ccc----------c--ChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeeccc
Q 006816 182 TSL----------V--LSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRE 238 (630)
Q Consensus 182 ~~~----------~--~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~ 238 (630)
.+. . ...|+.+++++||.++.+| + +.++|.++++++.+ .++|++|+|.+-+.
T Consensus 484 ~q~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v---~-~~~eL~~al~~a~~-~~~p~lIev~v~~~ 547 (572)
T PRK06456 484 VQDLFFGKRIVGVDYGPSPDFVKLAEAFGALGFNV---T-TYEDIEKSLKSAIK-EDIPAVIRVPVDKE 547 (572)
T ss_pred HHHHhhCCCcccccCCCCCCHHHHHHHCCCeeEEe---C-CHHHHHHHHHHHHh-CCCCEEEEEEeCcc
Confidence 211 1 1368999999999999999 6 99999999999987 78999999998653
No 98
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.54 E-value=2.2e-14 Score=164.08 Aligned_cols=116 Identities=20% Similarity=0.328 Sum_probs=102.3
Q ss_pred ccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCccccc
Q 006816 102 TGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGP 181 (630)
Q Consensus 102 ~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~ 181 (630)
.|+||+++|+|+|+++|. |+++|||++|||+|+ |+.++|.+|++++||.++||+||++|++...
T Consensus 433 ~g~mG~glpaAiGA~lA~--------------p~r~Vv~i~GDG~f~--m~~~eL~Ta~r~~lpvi~vV~NN~~~g~i~~ 496 (616)
T PRK07418 433 LGTMGFGMPAAMGVKVAL--------------PDEEVICIAGDASFL--MNIQELGTLAQYGINVKTVIINNGWQGMVRQ 496 (616)
T ss_pred ccccccHHHHHHHHHHhC--------------CCCcEEEEEcchHhh--hhHHHHHHHHHhCCCeEEEEEECCcchHHHH
Confidence 489999999999999998 899999999999999 9999999999999999999999999986442
Q ss_pred ccc-----------c--ChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeeccc
Q 006816 182 TSL-----------V--LSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRE 238 (630)
Q Consensus 182 ~~~-----------~--~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~ 238 (630)
.+. . ...|+.+++++||.++++| + ++++|.++++++.+ .++|++|++.+.+.
T Consensus 497 ~q~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~g~~V---~-~~~el~~al~~a~~-~~~p~lIeV~i~~~ 561 (616)
T PRK07418 497 WQESFYGERYSASNMEPGMPDFVKLAEAFGVKGMVI---S-ERDQLKDAIAEALA-HDGPVLIDVHVRRD 561 (616)
T ss_pred HHHHhcCCCceeecCCCCCCCHHHHHHHCCCeEEEe---C-CHHHHHHHHHHHHh-CCCCEEEEEEecCc
Confidence 211 0 1368999999999999999 5 99999999999987 78999999998543
No 99
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.54 E-value=2e-14 Score=163.16 Aligned_cols=116 Identities=17% Similarity=0.258 Sum_probs=101.2
Q ss_pred ccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCccccc
Q 006816 102 TGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGP 181 (630)
Q Consensus 102 ~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~ 181 (630)
.|+||+++|+|+|+++|. ++++|+|++|||+|+ |+.++|.+|++++||.++||+||++|++...
T Consensus 420 ~g~mG~glpaaiGa~la~--------------p~~~vv~i~GDG~f~--m~~~eL~Ta~r~~l~v~ivV~NN~~yg~i~~ 483 (574)
T PRK07979 420 LGTMGFGLPAALGVKMAL--------------PEETVVCVTGDGSIQ--MNIQELSTALQYELPVLVLNLNNRYLGMVKQ 483 (574)
T ss_pred ccchhhHHHHHHHHHHhC--------------CCCeEEEEEcchhhh--ccHHHHHHHHHhCCCeEEEEEeCchhhHHHH
Confidence 389999999999999998 889999999999999 9999999999999999999999999987442
Q ss_pred cc----------cc--ChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhc--CCCcEEEEEeecc
Q 006816 182 TS----------LV--LSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANE--TKKPTFIRVKKMR 237 (630)
Q Consensus 182 ~~----------~~--~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~--~~~P~~i~~~t~k 237 (630)
.+ .. ...|+.+++++||.+..+| + +.++|.++++++.+. .++|++|++.+-+
T Consensus 484 ~q~~~~~~~~~~~~~~~~~d~~~iA~a~G~~g~~v---~-~~~eL~~al~~a~~~~~~~~p~lIeV~i~~ 549 (574)
T PRK07979 484 WQDMIYSGRHSQSYMQSLPDFVRLAEAYGHVGIQI---S-HPDELESKLSEALEQVRNNRLVFVDVTVDG 549 (574)
T ss_pred HHHHhcCCccccccCCCCCCHHHHHHHCCCEEEEE---C-CHHHHHHHHHHHHhccCCCCcEEEEEEECC
Confidence 21 11 1368999999999999999 5 999999999999762 2899999999854
No 100
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.53 E-value=2.2e-14 Score=162.83 Aligned_cols=118 Identities=18% Similarity=0.237 Sum_probs=102.3
Q ss_pred ccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCccccc
Q 006816 102 TGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGP 181 (630)
Q Consensus 102 ~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~ 181 (630)
.|+||+++|+|+|+++|. ++++|+|++|||+|+ |+.++|.+|++++||.++||+||++|++...
T Consensus 422 ~gsmG~glpaAiGa~la~--------------p~r~Vv~i~GDG~f~--m~~~eL~Ta~r~~lpv~ivV~NN~~y~~i~~ 485 (574)
T PRK06466 422 LGTMGFGLPAAMGVKLAF--------------PDQDVACVTGEGSIQ--MNIQELSTCLQYGLPVKIINLNNGALGMVRQ 485 (574)
T ss_pred cchhhchHHHHHHHHHhC--------------CCCeEEEEEcchhhh--ccHHHHHHHHHhCCCeEEEEEeCCccHHHHH
Confidence 389999999999999998 889999999999999 9999999999999999999999999987542
Q ss_pred cc----------cc--ChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeecccc
Q 006816 182 TS----------LV--LSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRER 239 (630)
Q Consensus 182 ~~----------~~--~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~~ 239 (630)
.+ .. ...|+.+++++||.++.+| . +.++|.++|+++.+..++|++|++.+.+..
T Consensus 486 ~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v---~-~~~el~~al~~a~~~~~~p~lIev~i~~~~ 551 (574)
T PRK06466 486 WQDMQYEGRHSHSYMESLPDFVKLAEAYGHVGIRI---T-DLKDLKPKLEEAFAMKDRLVFIDIYVDRSE 551 (574)
T ss_pred HHHHhcCCceeecCCCCCCCHHHHHHHCCCeEEEE---C-CHHHHHHHHHHHHhcCCCcEEEEEEeCCcc
Confidence 21 11 2368999999999999999 5 999999999999862289999999986543
No 101
>PLN02470 acetolactate synthase
Probab=99.53 E-value=2e-14 Score=163.44 Aligned_cols=115 Identities=20% Similarity=0.177 Sum_probs=101.2
Q ss_pred ccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCccccc
Q 006816 102 TGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGP 181 (630)
Q Consensus 102 ~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~ 181 (630)
.|+||+++|+|+|+++|. ++++|+|++|||+|+ |+.++|.+|++++||.++||+||++|++...
T Consensus 425 ~g~mG~glpaaiGa~la~--------------p~~~Vv~i~GDG~f~--m~~~eL~Ta~~~~l~v~ivV~NN~~yg~i~~ 488 (585)
T PLN02470 425 LGAMGFGLPAAIGAAAAN--------------PDAIVVDIDGDGSFI--MNIQELATIHVENLPVKIMVLNNQHLGMVVQ 488 (585)
T ss_pred cccccchHHHHHHHHHhC--------------CCCcEEEEEccchhh--ccHHHHHHHHHhCCCeEEEEEeCCcchHHHH
Confidence 499999999999999998 889999999999999 8899999999999999999999999976532
Q ss_pred cc----------ccC---------hhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeecc
Q 006816 182 TS----------LVL---------SEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMR 237 (630)
Q Consensus 182 ~~----------~~~---------~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k 237 (630)
.+ ... ..|+.+++++||.++.+| + +.++|.++++++.+ .++|++|+|.+-+
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~v---~-~~~el~~al~~a~~-~~~p~lieV~i~~ 558 (585)
T PLN02470 489 WEDRFYKANRAHTYLGDPDAEAEIFPDFLKFAEGCKIPAARV---T-RKSDLREAIQKMLD-TPGPYLLDVIVPH 558 (585)
T ss_pred HHHHHhCCceeeeecCccccccCCCCCHHHHHHHCCCeEEEE---C-CHHHHHHHHHHHHh-CCCCEEEEEEeCC
Confidence 11 000 168999999999999999 5 99999999999987 7899999999854
No 102
>PLN02573 pyruvate decarboxylase
Probab=99.53 E-value=2.9e-14 Score=161.64 Aligned_cols=116 Identities=17% Similarity=0.231 Sum_probs=101.2
Q ss_pred cccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCcccc
Q 006816 101 TTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDG 180 (630)
Q Consensus 101 ~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~ 180 (630)
..|+||+++|+|+|+++|. ++++|+|++|||+|+ |+.++|.+|++++||.++||+||++|++..
T Consensus 426 ~~gsmG~glpaaiGa~lA~--------------p~r~vv~i~GDG~f~--m~~~EL~Ta~r~~lpvv~vV~NN~~yg~~~ 489 (578)
T PLN02573 426 QYGSIGWSVGATLGYAQAA--------------PDKRVIACIGDGSFQ--VTAQDVSTMIRCGQKSIIFLINNGGYTIEV 489 (578)
T ss_pred chhhhhhhhhHHHHHHHhC--------------CCCceEEEEeccHHH--hHHHHHHHHHHcCCCCEEEEEeCCceeEEE
Confidence 3589999999999999998 889999999999999 999999999999999999999999999765
Q ss_pred ccc-----ccChhcHHHHHHhCC-----CeEEEEeCCCCCHHHHHHHHHHHHh-cCCCcEEEEEeec
Q 006816 181 PTS-----LVLSEDISARFKSLG-----WNTIMVENIHDNLSSFKEALMAAAN-ETKKPTFIRVKKM 236 (630)
Q Consensus 181 ~~~-----~~~~~~~~~~~~a~G-----~~~~~v~dG~~d~~~l~~al~~a~~-~~~~P~~i~~~t~ 236 (630)
... .....|+.+++++|| +++.+| . +.++|.++++++.+ ..++|++|++.+-
T Consensus 490 ~~~~~~~~~~~~~d~~~lA~a~G~~~g~~~~~~V---~-~~~eL~~al~~a~~~~~~~p~lieV~v~ 552 (578)
T PLN02573 490 EIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTAKV---R-TEEELIEAIATATGEKKDCLCFIEVIVH 552 (578)
T ss_pred eecccCccccCCCCHHHHHHHhcCcCCceeEEEe---c-CHHHHHHHHHHHHhhCCCCcEEEEEEcC
Confidence 322 112468999999985 889999 5 89999999999973 1589999999874
No 103
>PRK08611 pyruvate oxidase; Provisional
Probab=99.53 E-value=2.4e-14 Score=162.48 Aligned_cols=117 Identities=18% Similarity=0.202 Sum_probs=103.3
Q ss_pred ccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCccccc
Q 006816 102 TGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGP 181 (630)
Q Consensus 102 ~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~ 181 (630)
.|+||+++|.|+|++++. ++++|+|++|||+|+ |..++|.+|+++++|.++||+||++|++...
T Consensus 407 ~g~mG~glpaaiGa~la~--------------p~~~Vv~i~GDGsf~--m~~~eL~Ta~r~~l~~iivV~NN~~~g~i~~ 470 (576)
T PRK08611 407 LGTMGCGLPGAIAAKIAF--------------PDRQAIAICGDGGFS--MVMQDFVTAVKYKLPIVVVVLNNQQLAFIKY 470 (576)
T ss_pred chhhhhhHHHHHHHHHhC--------------CCCcEEEEEcccHHh--hhHHHHHHHHHhCCCeEEEEEeCCcchHHHH
Confidence 499999999999999988 889999999999999 8999999999999999999999999987432
Q ss_pred cc----------ccChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeecccc
Q 006816 182 TS----------LVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRER 239 (630)
Q Consensus 182 ~~----------~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~~ 239 (630)
.+ .....|+.+++++||.++.+| + ++++|.++++++.+ .++|++|++.+.+..
T Consensus 471 ~q~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v---~-~~~eL~~al~~a~~-~~~p~lIeV~vd~~~ 533 (576)
T PRK08611 471 EQQAAGELEYAIDLSDMDYAKFAEACGGKGYRV---E-KAEELDPAFEEALA-QDKPVIIDVYVDPNA 533 (576)
T ss_pred HHHHhcCCcccccCCCCCHHHHHHHCCCeEEEe---C-CHHHHHHHHHHHHh-CCCCEEEEEEeCCcc
Confidence 11 012478999999999999999 6 99999999999987 789999999986543
No 104
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=99.53 E-value=2.9e-14 Score=160.49 Aligned_cols=114 Identities=27% Similarity=0.331 Sum_probs=99.4
Q ss_pred cccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCcccc
Q 006816 101 TTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDG 180 (630)
Q Consensus 101 ~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~ 180 (630)
..|+||+++|.|+|++++. ++++|+|++|||+|+ |..++|++|++++||.+++|+|||+|++..
T Consensus 405 ~~g~mG~~lp~aiGa~la~--------------p~~~vv~i~GDG~f~--~~~~eL~ta~~~~lp~~~vv~NN~~~~~~~ 468 (530)
T PRK07092 405 ASGGLGYGLPAAVGVALAQ--------------PGRRVIGLIGDGSAM--YSIQALWSAAQLKLPVTFVILNNGRYGALR 468 (530)
T ss_pred CCCcccchHHHHHHHHHhC--------------CCCeEEEEEeCchHh--hhHHHHHHHHHhCCCcEEEEEeChHHHHHH
Confidence 3689999999999999997 789999999999999 677999999999999889999999898743
Q ss_pred ccc-----------ccChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEee
Q 006816 181 PTS-----------LVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKK 235 (630)
Q Consensus 181 ~~~-----------~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t 235 (630)
..+ .....|+.+++++||+++..| + +.+++.++++++++ .++|++|++.+
T Consensus 469 ~~~~~~~~~~~~~~~~~~~d~~~~a~~~G~~~~~v---~-~~~~l~~al~~a~~-~~~p~liev~~ 529 (530)
T PRK07092 469 WFAPVFGVRDVPGLDLPGLDFVALARGYGCEAVRV---S-DAAELADALARALA-ADGPVLVEVEV 529 (530)
T ss_pred HHHHhhCCCCCCCCCCCCCCHHHHHHHCCCeEEEe---C-CHHHHHHHHHHHHh-CCCCEEEEEEc
Confidence 211 112478999999999999999 5 89999999999987 78999999976
No 105
>PRK07064 hypothetical protein; Provisional
Probab=99.53 E-value=1.9e-14 Score=162.59 Aligned_cols=114 Identities=25% Similarity=0.323 Sum_probs=101.4
Q ss_pred ccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCccccc
Q 006816 102 TGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGP 181 (630)
Q Consensus 102 ~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~ 181 (630)
.|+||+++|+|+|+++|. ++++|+|++|||+|+ |..++|.+|++++||.+++|+||++|++...
T Consensus 404 ~g~mG~~lpaAiGa~lA~--------------p~~~vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~ivV~NN~~yg~~~~ 467 (544)
T PRK07064 404 GGGIGQGLAMAIGAALAG--------------PGRKTVGLVGDGGLM--LNLGELATAVQENANMVIVLMNDGGYGVIRN 467 (544)
T ss_pred CCccccccchhhhhhhhC--------------cCCcEEEEEcchHhh--hhHHHHHHHHHhCCCeEEEEEeCChhHHHHH
Confidence 489999999999999998 789999999999999 8999999999999999999999999987542
Q ss_pred cc-----------ccChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeec
Q 006816 182 TS-----------LVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKM 236 (630)
Q Consensus 182 ~~-----------~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~ 236 (630)
.+ .....|+.+++++||+++.+| + +.++|.++++++.+ .++|++|++.+.
T Consensus 468 ~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v---~-~~~eL~~al~~a~~-~~~p~lIeV~~~ 528 (544)
T PRK07064 468 IQDAQYGGRRYYVELHTPDFALLAASLGLPHWRV---T-SADDFEAVLREALA-KEGPVLVEVDML 528 (544)
T ss_pred HHHHhcCCccccccCCCCCHHHHHHHCCCeEEEe---C-CHHHHHHHHHHHHc-CCCCEEEEEEcc
Confidence 21 112468999999999999999 5 89999999999987 789999999985
No 106
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.53 E-value=2.7e-14 Score=161.68 Aligned_cols=115 Identities=19% Similarity=0.211 Sum_probs=101.7
Q ss_pred cccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCcccccc
Q 006816 103 GPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGPT 182 (630)
Q Consensus 103 G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~~ 182 (630)
|+||+++|+|+|+++|. ++++|+|++|||+|+ |+..+|.+|+++++|.+++|+||++|++....
T Consensus 414 g~mG~glpaaiGa~la~--------------p~~~Vv~i~GDG~f~--m~~~eL~Ta~~~~l~i~~vV~NN~~y~~i~~~ 477 (561)
T PRK06048 414 GTMGYGFPAAIGAKVGK--------------PDKTVIDIAGDGSFQ--MNSQELATAVQNDIPVIVAILNNGYLGMVRQW 477 (561)
T ss_pred cccccHHHHHHHHHHhC--------------CCCcEEEEEeCchhh--ccHHHHHHHHHcCCCeEEEEEECCccHHHHHH
Confidence 89999999999999998 789999999999999 88999999999999999999999999865321
Q ss_pred c----------cc--ChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeeccc
Q 006816 183 S----------LV--LSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRE 238 (630)
Q Consensus 183 ~----------~~--~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~ 238 (630)
+ .. ...|+.+++++||.++.+| + +.++|.++|+++.+ .++|++|++.+.+.
T Consensus 478 ~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v---~-t~~el~~al~~a~~-~~~p~liev~~~~~ 540 (561)
T PRK06048 478 QELFYDKRYSHTCIKGSVDFVKLAEAYGALGLRV---E-KPSEVRPAIEEAVA-SDRPVVIDFIVECE 540 (561)
T ss_pred HHHHcCCcccccCCCCCCCHHHHHHHCCCeEEEE---C-CHHHHHHHHHHHHh-CCCCEEEEEEecCc
Confidence 1 11 2468999999999999999 5 89999999999987 78999999998643
No 107
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.53 E-value=3.5e-14 Score=160.73 Aligned_cols=115 Identities=17% Similarity=0.212 Sum_probs=101.5
Q ss_pred ccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCccccc
Q 006816 102 TGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGP 181 (630)
Q Consensus 102 ~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~ 181 (630)
.|+||+++|+|+|+++|. ++++|+|++|||+|+ |..++|.+|++++||.++||+||++|++...
T Consensus 421 ~gsmG~~lp~aiGa~lA~--------------p~~~vv~i~GDG~f~--~~~~el~Ta~~~~lpi~~vV~NN~~~~~~~~ 484 (570)
T PRK06725 421 LGTMGFGFPAAIGAQLAK--------------EEELVICIAGDASFQ--MNIQELQTIAENNIPVKVFIINNKFLGMVRQ 484 (570)
T ss_pred cccccchhhHHHhhHhhc--------------CCCeEEEEEecchhh--ccHHHHHHHHHhCCCeEEEEEECCccHHHHH
Confidence 399999999999999997 889999999999998 8889999999999999999999999987542
Q ss_pred cc-----------ccChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeecc
Q 006816 182 TS-----------LVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMR 237 (630)
Q Consensus 182 ~~-----------~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k 237 (630)
.+ .....|+.+++++||.+..+| + +.+++.++++++++ .++|++|++.+-+
T Consensus 485 ~q~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v---~-~~~~l~~al~~a~~-~~~p~liev~id~ 546 (570)
T PRK06725 485 WQEMFYENRLSESKIGSPDFVKVAEAYGVKGLRA---T-NSTEAKQVMLEAFA-HEGPVVVDFCVEE 546 (570)
T ss_pred HHHHhcCCccccCcCCCCCHHHHHHHCCCeEEEe---C-CHHHHHHHHHHHHh-CCCCEEEEEEeCC
Confidence 21 112468999999999999999 5 99999999999988 7899999999854
No 108
>PRK11269 glyoxylate carboligase; Provisional
Probab=99.53 E-value=2.3e-14 Score=163.25 Aligned_cols=117 Identities=21% Similarity=0.249 Sum_probs=100.9
Q ss_pred ccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCccccc
Q 006816 102 TGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGP 181 (630)
Q Consensus 102 ~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~ 181 (630)
.|+||+++|+|+|+++|. ++++|+|++|||+|+ |..++|.+|++++||.++||+||++|++...
T Consensus 418 ~G~mG~glpaAiGa~la~--------------p~r~Vv~i~GDG~f~--m~~~eL~Ta~~~~lpv~~vV~NN~~~g~i~~ 481 (591)
T PRK11269 418 AGPLGWTIPAALGVRAAD--------------PDRNVVALSGDYDFQ--FLIEELAVGAQFNLPYIHVLVNNAYLGLIRQ 481 (591)
T ss_pred cccccchhhhHHhhhhhC--------------CCCcEEEEEccchhh--cCHHHHHHHHHhCCCeEEEEEeCCchhHHHH
Confidence 489999999999999998 789999999999999 8899999999999999999999999986432
Q ss_pred ccc---------c------------ChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHh---cCCCcEEEEEeecc
Q 006816 182 TSL---------V------------LSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAAN---ETKKPTFIRVKKMR 237 (630)
Q Consensus 182 ~~~---------~------------~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~---~~~~P~~i~~~t~k 237 (630)
.+. . ...|+.+++++||.++.+| + ++++|.++++++.+ ..++|++|+|.+.+
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v---~-~~~eL~~al~~a~~~~~~~~gp~lieV~v~~ 557 (591)
T PRK11269 482 AQRAFDMDYCVQLAFENINSPELNGYGVDHVKVAEGLGCKAIRV---F-KPEDIAPALEQAKALMAEFRVPVVVEVILER 557 (591)
T ss_pred HHHHhccCccceeeccccccccccCCCCCHHHHHHHCCCeEEEE---C-CHHHHHHHHHHHHhhcccCCCcEEEEEEecc
Confidence 210 0 1268999999999999999 6 99999999999873 15799999999854
Q ss_pred c
Q 006816 238 E 238 (630)
Q Consensus 238 ~ 238 (630)
.
T Consensus 558 ~ 558 (591)
T PRK11269 558 V 558 (591)
T ss_pred c
Confidence 3
No 109
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=99.52 E-value=5.4e-14 Score=159.89 Aligned_cols=115 Identities=20% Similarity=0.238 Sum_probs=99.6
Q ss_pred ccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCccccc
Q 006816 102 TGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGP 181 (630)
Q Consensus 102 ~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~ 181 (630)
.|+||+++|.|+|+++|. ++++|+|++|||+|+ |++++|++|+++++|.++||+||+.|++...
T Consensus 436 ~gsmG~~l~~aiGa~la~--------------~~~~vv~i~GDGsf~--~~~~el~ta~~~~l~~~~vv~NN~~~g~~~~ 499 (578)
T PRK06112 436 LAGLGWGVPMAIGAKVAR--------------PGAPVICLVGDGGFA--HVWAELETARRMGVPVTIVVLNNGILGFQKH 499 (578)
T ss_pred ccccccHHHHHHHHHhhC--------------CCCcEEEEEcchHHH--hHHHHHHHHHHhCCCeEEEEEeCCccCCEEe
Confidence 378999999999999987 789999999999998 9999999999999998888888887765432
Q ss_pred ccc-----------cChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeecc
Q 006816 182 TSL-----------VLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMR 237 (630)
Q Consensus 182 ~~~-----------~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k 237 (630)
.+. ....|+.+++++||+++.+| + +.+++.++++++.+ .++|++|+|++-+
T Consensus 500 ~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v---~-~~~el~~al~~a~~-~~gp~lIev~~~~ 561 (578)
T PRK06112 500 AETVKFGTHTDACHFAAVDHAAIARACGCDGVRV---E-DPAELAQALAAAMA-APGPTLIEVITDP 561 (578)
T ss_pred ccccccCCccccCcCCCCCHHHHHHHCCCeEEEe---C-CHHHHHHHHHHHHh-CCCCEEEEEEcCc
Confidence 111 12468999999999999999 5 89999999999987 7899999999854
No 110
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=99.52 E-value=4.7e-14 Score=160.07 Aligned_cols=116 Identities=15% Similarity=0.246 Sum_probs=101.8
Q ss_pred ccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCccccc
Q 006816 102 TGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGP 181 (630)
Q Consensus 102 ~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~ 181 (630)
.|+||+++|+|+|+++|. ++++|+|++|||+|+ |+.++|.++++++||.++||+|||+|++...
T Consensus 407 ~gsmG~glpaAiGa~la~--------------p~r~Vv~i~GDGsf~--m~~~eL~Tavr~~lpi~~VV~NN~~yg~i~~ 470 (575)
T TIGR02720 407 FATMGVGVPGAIAAKLNY--------------PDRQVFNLAGDGAFS--MTMQDLLTQVQYHLPVINIVFSNCTYGFIKD 470 (575)
T ss_pred cchhhchHHHHHHHHHhC--------------CCCcEEEEEcccHHH--hhHHHHHHHHHhCCCeEEEEEeCCccHHHHH
Confidence 499999999999999998 889999999999999 8999999999999999999999999986432
Q ss_pred cc----------ccChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHH--hcCCCcEEEEEeeccc
Q 006816 182 TS----------LVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAA--NETKKPTFIRVKKMRE 238 (630)
Q Consensus 182 ~~----------~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~--~~~~~P~~i~~~t~k~ 238 (630)
.+ .....|+.+++++||.++.+| . +.++|.++++++. + .++|++|++.+.+.
T Consensus 471 ~~~~~~~~~~~~~~~~~df~~iA~a~G~~~~~v---~-~~~el~~al~~a~~~~-~~~p~liev~i~~~ 534 (575)
T TIGR02720 471 EQEDTNQPLIGVDFNDADFAKIAEGVGAVGFRV---N-KIEQLPAVFEQAKAIK-QGKPVLIDAKITGD 534 (575)
T ss_pred HHHHhCCCcccccCCCCCHHHHHHHCCCEEEEe---C-CHHHHHHHHHHHHhhC-CCCcEEEEEEeCCC
Confidence 11 112468999999999999999 5 8999999999998 6 68999999998653
No 111
>PRK08617 acetolactate synthase; Reviewed
Probab=99.52 E-value=2.9e-14 Score=161.28 Aligned_cols=118 Identities=20% Similarity=0.220 Sum_probs=103.3
Q ss_pred cccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCcccc
Q 006816 101 TTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDG 180 (630)
Q Consensus 101 ~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~ 180 (630)
..|+||+++|+|+|+++|. ++++|+|++|||+|+ |+.++|.+|++++||.++||+||++|++..
T Consensus 412 ~~g~mG~~lpaaiGa~la~--------------p~~~vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~~vV~NN~~~~~~~ 475 (552)
T PRK08617 412 GMQTLGVALPWAIAAALVR--------------PGKKVVSVSGDGGFL--FSAMELETAVRLKLNIVHIIWNDGHYNMVE 475 (552)
T ss_pred ccccccccccHHHhhHhhc--------------CCCcEEEEEechHHh--hhHHHHHHHHHhCCCeEEEEEECCccchHH
Confidence 3589999999999999998 889999999999999 999999999999999999999999998754
Q ss_pred cccc----------cChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeecccc
Q 006816 181 PTSL----------VLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRER 239 (630)
Q Consensus 181 ~~~~----------~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~~ 239 (630)
..+. ....|+.+++++||.++.+| + ++++|.++++++.+ .++|++|++.+.+..
T Consensus 476 ~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v---~-~~~eL~~al~~a~~-~~~p~liev~~~~~~ 539 (552)
T PRK08617 476 FQEEMKYGRSSGVDFGPVDFVKYAESFGAKGLRV---T-SPDELEPVLREALA-TDGPVVIDIPVDYSD 539 (552)
T ss_pred HHHHhhcCCcccCCCCCCCHHHHHHHCCCeEEEE---C-CHHHHHHHHHHHHh-CCCcEEEEEEecccc
Confidence 3211 12468999999999999999 6 99999999999987 789999999986443
No 112
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.52 E-value=5.4e-14 Score=159.37 Aligned_cols=117 Identities=23% Similarity=0.286 Sum_probs=102.4
Q ss_pred ccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCccccc
Q 006816 102 TGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGP 181 (630)
Q Consensus 102 ~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~ 181 (630)
.|+||+++|.|+|+++|. ++++|+|++|||+|+ |+..+|.+|++++||.+++|+||++|++...
T Consensus 413 ~g~mG~~l~~aiGa~la~--------------p~~~vv~i~GDG~f~--m~~~eL~Ta~~~~lpvi~vV~NN~~~~~i~~ 476 (563)
T PRK08527 413 LGTMGYGLPAALGAKLAV--------------PDKVVINFTGDGSIL--MNIQELMTAVEYKIPVINIILNNNFLGMVRQ 476 (563)
T ss_pred cccccchHHHHHHHHHhC--------------CCCcEEEEecCchhc--ccHHHHHHHHHhCCCeEEEEEECCcchhHHH
Confidence 389999999999999998 789999999999999 8889999999999999999999999987543
Q ss_pred ccc-----------c-ChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeecccc
Q 006816 182 TSL-----------V-LSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRER 239 (630)
Q Consensus 182 ~~~-----------~-~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~~ 239 (630)
.+. . ...|+.+++++||.++.+| + +.++|.++++++.+ .++|++|+|.+.+..
T Consensus 477 ~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v---~-~~~el~~al~~a~~-~~~p~lieV~v~~~~ 541 (563)
T PRK08527 477 WQTFFYEERYSETDLSTQPDFVKLAESFGGIGFRV---T-TKEEFDKALKEALE-SDKVALIDVKIDRFE 541 (563)
T ss_pred HHHhhcCCceeeccCCCCCCHHHHHHHCCCeEEEE---C-CHHHHHHHHHHHHh-CCCCEEEEEEECCcc
Confidence 210 1 1368999999999999999 5 99999999999987 789999999986543
No 113
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=99.52 E-value=3.1e-14 Score=161.63 Aligned_cols=116 Identities=18% Similarity=0.257 Sum_probs=102.1
Q ss_pred ccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCccccc
Q 006816 102 TGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGP 181 (630)
Q Consensus 102 ~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~ 181 (630)
.|+||+++|.|+|+++|. ++++|+|++|||+|+ |...+|++|+++++|.++||+||++|++...
T Consensus 423 ~g~mG~glpaAiGaala~--------------p~~~vv~i~GDGsf~--m~~~eL~ta~r~~lpi~ivV~NN~~~~~i~~ 486 (571)
T PRK07710 423 LGTMGFGLPAAIGAQLAK--------------PDETVVAIVGDGGFQ--MTLQELSVIKELSLPVKVVILNNEALGMVRQ 486 (571)
T ss_pred cccccchHHHHHHHHHhC--------------CCCcEEEEEcchHHh--hhHHHHHHHHHhCCCeEEEEEECchHHHHHH
Confidence 389999999999999998 889999999999999 8888999999999999999999999987543
Q ss_pred ccc------------cChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeeccc
Q 006816 182 TSL------------VLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRE 238 (630)
Q Consensus 182 ~~~------------~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~ 238 (630)
.+. ....|+.+++++||.++.+| + +.++|.++++++.+ .++|++|++.+.+.
T Consensus 487 ~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v---~-~~~el~~al~~a~~-~~~p~lieV~vd~~ 550 (571)
T PRK07710 487 WQEEFYNQRYSHSLLSCQPDFVKLAEAYGIKGVRI---D-DELEAKEQLQHAIE-LQEPVVIDCRVLQS 550 (571)
T ss_pred HHHHHhCCcceeccCCCCCCHHHHHHHCCCeEEEE---C-CHHHHHHHHHHHHh-CCCCEEEEEEecCc
Confidence 210 12468999999999999999 5 89999999999987 78999999998643
No 114
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=99.52 E-value=3.8e-14 Score=161.19 Aligned_cols=116 Identities=16% Similarity=0.269 Sum_probs=101.8
Q ss_pred cccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCcccc
Q 006816 101 TTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDG 180 (630)
Q Consensus 101 ~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~ 180 (630)
..|+||+++|+|+|+++|. ++++|+|++|||+|+ |+.++|.+|++++||.++||+||++|++..
T Consensus 428 ~~g~mG~glpaaiGaala~--------------p~~~vv~i~GDG~f~--m~~~eL~Ta~~~~l~~~~vV~NN~~y~~i~ 491 (585)
T CHL00099 428 GLGTMGYGLPAAIGAQIAH--------------PNELVICISGDASFQ--MNLQELGTIAQYNLPIKIIIINNKWQGMVR 491 (585)
T ss_pred cccchhhhHHHHHHHHHhC--------------CCCeEEEEEcchhhh--hhHHHHHHHHHhCCCeEEEEEECCcchHHH
Confidence 3599999999999999998 789999999999999 999999999999999999999999888643
Q ss_pred cccc------------c-ChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeecc
Q 006816 181 PTSL------------V-LSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMR 237 (630)
Q Consensus 181 ~~~~------------~-~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k 237 (630)
..+. . ...|+.+++++||.++.+| + +.++|.++++++++ .++|++|++.+..
T Consensus 492 ~~q~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v---~-~~~el~~al~~a~~-~~~p~liev~v~~ 556 (585)
T CHL00099 492 QWQQAFYGERYSHSNMEEGAPDFVKLAEAYGIKGLRI---K-SRKDLKSSLKEALD-YDGPVLIDCQVIE 556 (585)
T ss_pred HHHHHhcCCCcccccCCCCCCCHHHHHHHCCCeEEEe---C-CHHHHHHHHHHHHh-CCCCEEEEEEECC
Confidence 2210 0 1368999999999999999 5 89999999999987 7899999999854
No 115
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=99.52 E-value=4.5e-14 Score=159.61 Aligned_cols=117 Identities=17% Similarity=0.231 Sum_probs=102.8
Q ss_pred ccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCccccc
Q 006816 102 TGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGP 181 (630)
Q Consensus 102 ~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~ 181 (630)
.|+||+++|.|+|+++|. ++++|+|++|||+|+ |...+|.+|+++++|.+++|+||++|++...
T Consensus 400 ~g~mG~glpaAiGa~la~--------------p~~~vv~i~GDG~f~--~~~~eL~ta~~~~l~v~ivV~NN~~~~~~~~ 463 (548)
T PRK08978 400 LGTMGFGLPAAIGAQVAR--------------PDDTVICVSGDGSFM--MNVQELGTIKRKQLPVKIVLLDNQRLGMVRQ 463 (548)
T ss_pred hhhhhchHHHHHHHHHhC--------------CCCcEEEEEccchhh--ccHHHHHHHHHhCCCeEEEEEeCCccHHHHH
Confidence 389999999999999998 889999999999999 8899999999999999999999999987542
Q ss_pred cc---------cc---ChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeecccc
Q 006816 182 TS---------LV---LSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRER 239 (630)
Q Consensus 182 ~~---------~~---~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~~ 239 (630)
.+ .. ...|+.+++++||+++.+| . +.++|.++++++.+ .++|++|++.+-+..
T Consensus 464 ~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v---~-~~~el~~al~~a~~-~~~p~lIeV~id~~~ 528 (548)
T PRK08978 464 WQQLFFDERYSETDLSDNPDFVMLASAFGIPGQTI---T-RKDQVEAALDTLLN-SEGPYLLHVSIDELE 528 (548)
T ss_pred HHHHHhCCcceecCCCCCCCHHHHHHHCCCeEEEE---C-CHHHHHHHHHHHHh-CCCCEEEEEEecCcc
Confidence 21 01 2368999999999999999 5 99999999999987 789999999986543
No 116
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=99.52 E-value=3.6e-14 Score=160.67 Aligned_cols=117 Identities=20% Similarity=0.303 Sum_probs=101.5
Q ss_pred cccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCcccc
Q 006816 101 TTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDG 180 (630)
Q Consensus 101 ~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~ 180 (630)
..|+||+++|+|+|++++. ++++|+|++|||+|+ |.+++|.+|+++++|.+++|+||++|++..
T Consensus 413 ~~g~mG~glpaaiGa~la~--------------p~~~vv~i~GDGsf~--~~~~el~ta~~~~l~i~~vv~nN~~~~~~~ 476 (557)
T PRK08199 413 TSGSMGYGLPAAIAAKLLF--------------PERTVVAFAGDGCFL--MNGQELATAVQYGLPIIVIVVNNGMYGTIR 476 (557)
T ss_pred CCccccchHHHHHHHHHhC--------------CCCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCCcchHHH
Confidence 4599999999999999998 889999999999999 899999999999999888888888888643
Q ss_pred ccc-----------ccChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeeccc
Q 006816 181 PTS-----------LVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRE 238 (630)
Q Consensus 181 ~~~-----------~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~ 238 (630)
..+ .....|+.+++++||+++.+| + +.+++.++++++++ .++|++|+|.+-+.
T Consensus 477 ~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v---~-~~~el~~al~~a~~-~~gp~li~v~~~~~ 540 (557)
T PRK08199 477 MHQEREYPGRVSGTDLTNPDFAALARAYGGHGETV---E-RTEDFAPAFERALA-SGKPALIEIRIDPE 540 (557)
T ss_pred HHHHHhcCCccccccCCCCCHHHHHHHCCCeEEEe---C-CHHHHHHHHHHHHh-CCCCEEEEEEeCHH
Confidence 211 112368999999999999999 5 89999999999987 78999999998543
No 117
>PRK08322 acetolactate synthase; Reviewed
Probab=99.52 E-value=6.2e-14 Score=158.56 Aligned_cols=116 Identities=18% Similarity=0.176 Sum_probs=102.4
Q ss_pred cccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCcccc
Q 006816 101 TTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDG 180 (630)
Q Consensus 101 ~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~ 180 (630)
..|+||+++|.|+|+++|. ++++|+|++|||+|+ |+.++|.+|+++++|.+++|+||++|++..
T Consensus 404 ~~g~mG~~lpaaiGa~la~--------------p~~~vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~iiV~NN~~~g~~~ 467 (547)
T PRK08322 404 ALATMGAGLPSAIAAKLVH--------------PDRKVLAVCGDGGFM--MNSQELETAVRLGLPLVVLILNDNAYGMIR 467 (547)
T ss_pred CcccccchhHHHHHHHHhC--------------CCCcEEEEEcchhHh--ccHHHHHHHHHhCCCeEEEEEeCCCcchHH
Confidence 3489999999999999998 889999999999999 889999999999999999999999998754
Q ss_pred cccc----------cChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeecc
Q 006816 181 PTSL----------VLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMR 237 (630)
Q Consensus 181 ~~~~----------~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k 237 (630)
..+. ...+|+.+++++||+++.+| . +.++|.++++++.+ .++|++|+|.+.+
T Consensus 468 ~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v---~-~~~eL~~al~~a~~-~~~p~lIev~v~~ 529 (547)
T PRK08322 468 WKQENMGFEDFGLDFGNPDFVKYAESYGAKGYRV---E-SADDLLPTLEEALA-QPGVHVIDCPVDY 529 (547)
T ss_pred HHHHhhcCCcccccCCCCCHHHHHHHCCCeEEEe---C-CHHHHHHHHHHHHh-CCCCEEEEEEecC
Confidence 2111 12468999999999999999 5 99999999999987 6899999999854
No 118
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=99.52 E-value=3.7e-14 Score=161.64 Aligned_cols=116 Identities=16% Similarity=0.185 Sum_probs=101.0
Q ss_pred ccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhH-HHHHHHhHHc-----CCCcEEEEEECCC
Q 006816 102 TGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGIS-HEAAALAAHW-----KLNKLTLIYDDNH 175 (630)
Q Consensus 102 ~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~-~eal~~a~~~-----~L~~li~i~~~N~ 175 (630)
-|+||+++|+|+|+++|. ++++|+|++|||+|+ |+ .++|.+|+++ +||.++||+||++
T Consensus 414 ~g~mG~glpaaiGa~la~--------------p~~~Vv~i~GDG~f~--m~~~~EL~Ta~r~~~~~~~lpviivV~NN~~ 477 (597)
T PRK08273 414 LATMGPAVPYAIAAKFAH--------------PDRPVIALVGDGAMQ--MNGMAELITVAKYWRQWSDPRLIVLVLNNRD 477 (597)
T ss_pred cccccchHHHHHHHHHhC--------------CCCcEEEEEcchhHh--ccchHHHHHHHHHhhcccCCCEEEEEEeCCc
Confidence 389999999999999998 899999999999999 88 6999999999 8999999999999
Q ss_pred Cccccccc-------------ccChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeeccc
Q 006816 176 NTIDGPTS-------------LVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRE 238 (630)
Q Consensus 176 ~~i~~~~~-------------~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~ 238 (630)
|++....+ .....|+.+++++||+.+.+| . +.++|.++++++.+ .++|++|+|.+.+.
T Consensus 478 ~~~i~~~q~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v---~-~~~eL~~al~~a~~-~~~p~lIeV~~~~~ 548 (597)
T PRK08273 478 LNQVTWEQRVMEGDPKFEASQDLPDVPYARFAELLGLKGIRV---D-DPEQLGAAWDEALA-ADRPVVLEVKTDPN 548 (597)
T ss_pred chHHHHHHHHhcCCCcccccccCCCCCHHHHHHHCCCEEEEE---C-CHHHHHHHHHHHHh-CCCCEEEEEEeCCC
Confidence 97643211 012367999999999999999 5 99999999999987 79999999998543
No 119
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=99.51 E-value=3.3e-14 Score=161.61 Aligned_cols=118 Identities=17% Similarity=0.202 Sum_probs=101.6
Q ss_pred ccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCccccc
Q 006816 102 TGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGP 181 (630)
Q Consensus 102 ~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~ 181 (630)
.|+||+++|+|+|+++|. ++++|+|++|||+|+ |+.++|.+|++++||.++||+||++|++...
T Consensus 429 ~g~mG~~lpaaiGa~la~--------------p~~~Vv~i~GDG~f~--m~~~eL~Tavr~~lpvi~vV~NN~~yg~i~~ 492 (579)
T TIGR03457 429 FGNCGYAFPTIIGAKIAA--------------PDRPVVAYAGDGAWG--MSMNEIMTAVRHDIPVTAVVFRNRQWGAEKK 492 (579)
T ss_pred cccccchHHHHHhhhhhC--------------CCCcEEEEEcchHHh--ccHHHHHHHHHhCCCeEEEEEECcchHHHHH
Confidence 389999999999999998 889999999999999 8899999999999999999999999987542
Q ss_pred ccc-----------cCh-hcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhc--CCCcEEEEEeecccc
Q 006816 182 TSL-----------VLS-EDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANE--TKKPTFIRVKKMRER 239 (630)
Q Consensus 182 ~~~-----------~~~-~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~--~~~P~~i~~~t~k~~ 239 (630)
.+. ... .|+.+++++||.++.+| + +.++|.++++++.+. .++|++|++.+.+..
T Consensus 493 ~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~g~~v---~-~~~el~~al~~a~~~~~~~~p~lieV~v~~~~ 560 (579)
T TIGR03457 493 NQVDFYNNRFVGTELESELSFAGIADAMGAKGVVV---D-KPEDVGPALKKAIAAQAEGKTTVIEIVCTREL 560 (579)
T ss_pred HHHHhhCCcceeccCCCCCCHHHHHHHCCCeEEEE---C-CHHHHHHHHHHHHhhCCCCCcEEEEEEeCCCc
Confidence 211 112 48999999999999999 5 999999999998641 478999999986543
No 120
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=99.50 E-value=6.8e-14 Score=158.62 Aligned_cols=116 Identities=23% Similarity=0.317 Sum_probs=101.4
Q ss_pred ccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCccccc
Q 006816 102 TGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGP 181 (630)
Q Consensus 102 ~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~ 181 (630)
.|+||+++|+|+|+++|. ++++|+|++|||+|+ |...+|.+|+++++|.++||+||++|++...
T Consensus 418 ~g~mG~~lpaaiGa~la~--------------~~~~vv~i~GDGsf~--~~~~eL~ta~~~~lpvi~vV~NN~~~g~~~~ 481 (564)
T PRK08155 418 LGTMGFGLPAAIGAALAN--------------PERKVLCFSGDGSLM--MNIQEMATAAENQLDVKIILMNNEALGLVHQ 481 (564)
T ss_pred cccccchhHHHHHHHHhC--------------CCCcEEEEEccchhh--ccHHHHHHHHHhCCCeEEEEEeCCcccccHH
Confidence 389999999999999998 789999999999999 7888999999999999999999999987543
Q ss_pred ccc----------c--ChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeeccc
Q 006816 182 TSL----------V--LSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRE 238 (630)
Q Consensus 182 ~~~----------~--~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~ 238 (630)
.+. . ...|+.+++++||.++++| . +.+++.++++++.+ .++|++|++.+.+.
T Consensus 482 ~q~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v---~-~~~el~~al~~a~~-~~~p~lIeV~~~~~ 545 (564)
T PRK08155 482 QQSLFYGQRVFAATYPGKINFMQIAAGFGLETCDL---N-NEADPQAALQEAIN-RPGPALIHVRIDAE 545 (564)
T ss_pred HHHHhcCCCeeeccCCCCCCHHHHHHHCCCeEEEe---C-CHHHHHHHHHHHHh-CCCCEEEEEEeCCC
Confidence 211 1 2368999999999999999 5 89999999999987 78999999998543
No 121
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=99.50 E-value=1.7e-13 Score=139.63 Aligned_cols=116 Identities=16% Similarity=0.171 Sum_probs=96.7
Q ss_pred cccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCcccccc
Q 006816 103 GPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGPT 182 (630)
Q Consensus 103 G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~~ 182 (630)
+++|+++|+|+|+++|. |+++|||++|||+++. +...++.+|+++++|.+++|+||+.|++.+..
T Consensus 68 ~~~G~alPaAiGaklA~--------------Pdr~VV~i~GDG~f~~-~g~~el~ta~r~nlpi~iIV~NN~~yGmt~~Q 132 (277)
T PRK09628 68 TTHGRAVAYATGIKLAN--------------PDKHVIVVSGDGDGLA-IGGNHTIHGCRRNIDLNFILINNFIYGLTNSQ 132 (277)
T ss_pred eccccHHHHHHHHHHHC--------------CCCeEEEEECchHHHH-hhHHHHHHHHHhCcCeEEEEEEChHHhcceec
Confidence 47899999999999998 8999999999999862 35567888999999999999999999875422
Q ss_pred cc-------------c----ChhcHHHHHHhCCCeEE---EEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeeccc
Q 006816 183 SL-------------V----LSEDISARFKSLGWNTI---MVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRE 238 (630)
Q Consensus 183 ~~-------------~----~~~~~~~~~~a~G~~~~---~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~ 238 (630)
+. . ...|+.++++++|+.++ .| . +++++.+++++|.+ .++|++|++.+..-
T Consensus 133 ~~~~t~~g~~~~~~~~g~~~~~~D~~~lA~a~G~~~va~~~v---~-~~~el~~al~~Al~-~~Gp~lIeV~~~c~ 203 (277)
T PRK09628 133 TSPTTPKGMWTVTAQYGNIDPTFDACKLATAAGASFVARESV---I-DPQKLEKLLVKGFS-HKGFSFFDVFSNCH 203 (277)
T ss_pred ccCCCCCCceeeeccCCCcCCCCCHHHHHHHCCCceEEEEcc---C-CHHHHHHHHHHHHh-CCCCEEEEEcCCCC
Confidence 11 0 12377999999999974 66 5 89999999999998 79999999987654
No 122
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=99.49 E-value=6.8e-14 Score=159.92 Aligned_cols=117 Identities=15% Similarity=0.187 Sum_probs=101.4
Q ss_pred ccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCccccc
Q 006816 102 TGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGP 181 (630)
Q Consensus 102 ~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~ 181 (630)
.|+||+++|.|+|++++. ++++|+|++|||+|+ |+.++|.+|++++||.++||+||++|++...
T Consensus 446 ~G~mG~glpaaiGa~la~--------------p~~~Vv~i~GDG~f~--m~~~eL~Ta~~~~lpv~ivV~NN~~~g~i~~ 509 (612)
T PRK07789 446 LGTMGYAVPAAMGAKVGR--------------PDKEVWAIDGDGCFQ--MTNQELATCAIEGIPIKVALINNGNLGMVRQ 509 (612)
T ss_pred cccccchhhhHHhhhccC--------------CCCcEEEEEcchhhh--ccHHHHHHHHHcCCCeEEEEEECCchHHHHH
Confidence 389999999999999998 889999999999999 9999999999999999999999999987542
Q ss_pred ccc----------c-C-----hhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeeccc
Q 006816 182 TSL----------V-L-----SEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRE 238 (630)
Q Consensus 182 ~~~----------~-~-----~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~ 238 (630)
.+. . . ..|+.+++++||..+.+| + +.++|.++|+++.+..++|++|++.+-+.
T Consensus 510 ~q~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V---~-~~~eL~~al~~a~~~~~~p~lIev~i~~~ 578 (612)
T PRK07789 510 WQTLFYEERYSNTDLHTHSHRIPDFVKLAEAYGCVGLRC---E-REEDVDAVIEKARAINDRPVVIDFVVGKD 578 (612)
T ss_pred HHHHhhCCCcceeecCcCCCCCCCHHHHHHHCCCeEEEE---C-CHHHHHHHHHHHHhcCCCcEEEEEEECCc
Confidence 110 0 0 258999999999999999 6 99999999999986227999999998643
No 123
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=99.48 E-value=6.1e-14 Score=158.86 Aligned_cols=115 Identities=17% Similarity=0.268 Sum_probs=100.3
Q ss_pred ccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCccccc
Q 006816 102 TGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGP 181 (630)
Q Consensus 102 ~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~ 181 (630)
.|+||+++|+|+|+++|. ++++|+|++|||+|+ |+.++|.+|+++++|.++||+||++|++...
T Consensus 417 ~g~mG~glpaaiGa~lA~--------------p~~~Vv~i~GDG~f~--m~~~eL~Ta~~~~l~i~~vV~NN~~y~~i~~ 480 (566)
T PRK07282 417 LGTMGFGIPAAIGAKIAN--------------PDKEVILFVGDGGFQ--MTNQELAILNIYKVPIKVVMLNNHSLGMVRQ 480 (566)
T ss_pred cccccchhhHhheeheec--------------CCCcEEEEEcchhhh--ccHHHHHHHHHhCCCeEEEEEeCCCchHHHH
Confidence 499999999999999998 889999999999999 9999999999999999999999999997542
Q ss_pred cc----------cc--ChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeeccc
Q 006816 182 TS----------LV--LSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRE 238 (630)
Q Consensus 182 ~~----------~~--~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~ 238 (630)
.+ .. ...|+.+++++||.++.+| + +.++|.++++. .. .++|++|++.+.+.
T Consensus 481 ~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v---~-~~~el~~al~~-~~-~~~p~lIeV~v~~~ 543 (566)
T PRK07282 481 WQESFYEGRTSESVFDTLPDFQLMAQAYGIKHYKF---D-NPETLAQDLEV-IT-EDVPMLIEVDISRK 543 (566)
T ss_pred HHHHHhCCCcccccCCCCCCHHHHHHHCCCEEEEE---C-CHHHHHHHHHH-hc-CCCCEEEEEEeCCc
Confidence 21 11 2468999999999999999 5 89999999975 44 58999999998643
No 124
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.48 E-value=1e-13 Score=157.67 Aligned_cols=118 Identities=16% Similarity=0.272 Sum_probs=100.6
Q ss_pred cccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCcccc
Q 006816 101 TTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDG 180 (630)
Q Consensus 101 ~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~ 180 (630)
..|+||+++|.|+|+++|. ++++|+|++|||+|+ |..++|.+|+++++|.++||+||++|++..
T Consensus 419 ~~g~mG~~lp~aiGa~la~--------------p~~~vv~i~GDG~f~--~~~~eL~ta~~~~lpv~~vV~NN~~~~~i~ 482 (574)
T PRK06882 419 GAGTMGFGLPAAIGVKFAH--------------PEATVVCVTGDGSIQ--MNIQELSTAKQYDIPVVIVSLNNRFLGMVK 482 (574)
T ss_pred CcccccchhHHHHHHHhhc--------------CCCcEEEEEcchhhh--ccHHHHHHHHHhCCCeEEEEEECchhHHHH
Confidence 3488999999999999998 789999999999999 888999999999999999999999887543
Q ss_pred ccc----------cc--ChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeeccc
Q 006816 181 PTS----------LV--LSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRE 238 (630)
Q Consensus 181 ~~~----------~~--~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~ 238 (630)
..+ .. ...|+.+++++||+++++| + +.++|.++++++.+..++|++|+|.+.+.
T Consensus 483 ~~q~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v---~-~~~eL~~al~~a~~~~~~p~liev~i~~~ 548 (574)
T PRK06882 483 QWQDLIYSGRHSQVYMNSLPDFAKLAEAYGHVGIQI---D-TPDELEEKLTQAFSIKDKLVFVDVNVDET 548 (574)
T ss_pred HHHHHhcCCcccccCCCCCCCHHHHHHHCCCeEEEe---C-CHHHHHHHHHHHHhcCCCcEEEEEEecCc
Confidence 211 11 2368999999999999999 5 89999999999986237899999998654
No 125
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=99.48 E-value=1.3e-13 Score=156.87 Aligned_cols=115 Identities=21% Similarity=0.268 Sum_probs=100.7
Q ss_pred ccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCccccc
Q 006816 102 TGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGP 181 (630)
Q Consensus 102 ~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~ 181 (630)
.|+||+++|+|+|+++|. ++++|+|++|||+|+ |...+|.+|++++||.++||+||++|++...
T Consensus 418 ~gsmG~~lpaaiGa~la~--------------p~~~Vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~~vV~NN~~~g~~~~ 481 (586)
T PRK06276 418 LGTMGFGFPAAIGAKVAK--------------PDANVIAITGDGGFL--MNSQELATIAEYDIPVVICIFDNRTLGMVYQ 481 (586)
T ss_pred ccccccchhHHHhhhhhc--------------CCCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCCchHHHHH
Confidence 379999999999999998 788999999999999 8889999999999999999999999886432
Q ss_pred cc----------cc--ChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeecc
Q 006816 182 TS----------LV--LSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMR 237 (630)
Q Consensus 182 ~~----------~~--~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k 237 (630)
.+ .. ...|+.+++++||.++.+| + ++++|.++++++.+ .++|++|+|.+.+
T Consensus 482 ~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v---~-~~~el~~al~~a~~-~~~p~lIeV~i~~ 544 (586)
T PRK06276 482 WQNLYYGKRQSEVHLGETPDFVKLAESYGVKADRV---E-KPDEIKEALKEAIK-SGEPYLLDIIIDP 544 (586)
T ss_pred HHHHHhCCCcccccCCCCCCHHHHHHHCCCeEEEE---C-CHHHHHHHHHHHHh-CCCCEEEEEEecc
Confidence 11 11 2468999999999999999 6 99999999999987 7899999999853
No 126
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=99.47 E-value=4.3e-13 Score=138.24 Aligned_cols=115 Identities=17% Similarity=0.128 Sum_probs=97.3
Q ss_pred cccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCcccccc
Q 006816 103 GPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGPT 182 (630)
Q Consensus 103 G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~~ 182 (630)
|.+|.++|+|+|+++|+ ++++|||++|||++. ++..++|.+|+++++|.+++|+||+.|++.+.+
T Consensus 70 g~mG~alpaAiGaklA~--------------pd~~VV~i~GDG~~~-~mg~~eL~tA~r~nl~i~vIV~NN~~YG~t~gQ 134 (301)
T PRK05778 70 TLHGRAIAFATGAKLAN--------------PDLEVIVVGGDGDLA-SIGGGHFIHAGRRNIDITVIVENNGIYGLTKGQ 134 (301)
T ss_pred hhhccHHHHHHHHHHHC--------------CCCcEEEEeCccHHH-hccHHHHHHHHHHCCCcEEEEEeCchhhcccCc
Confidence 78899999999999998 899999999999972 266779999999999999999999999875532
Q ss_pred cc-----------------cChhcHHHHHHhCCCeEE---EEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeecc
Q 006816 183 SL-----------------VLSEDISARFKSLGWNTI---MVENIHDNLSSFKEALMAAANETKKPTFIRVKKMR 237 (630)
Q Consensus 183 ~~-----------------~~~~~~~~~~~a~G~~~~---~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k 237 (630)
.. ....|+.++++++|+.++ .+ . ++++|.+++++|.+ .++|++|++.+.-
T Consensus 135 ~s~t~~~g~~~~~~~~g~~~~~~d~~~lA~a~G~~~va~~~v---~-~~~eL~~ai~~A~~-~~GpalIeV~~~C 204 (301)
T PRK05778 135 ASPTTPEGSKTKTAPYGNIEPPIDPCALALAAGATFVARSFA---G-DVKQLVELIKKAIS-HKGFAFIDVLSPC 204 (301)
T ss_pred ccCCcCCCcccccccCCCcCCCCCHHHHHHHCCCCEEEEecc---C-CHHHHHHHHHHHHh-CCCCEEEEEcCCC
Confidence 10 013589999999999886 45 5 89999999999997 7999999988543
No 127
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=99.47 E-value=1.5e-13 Score=155.63 Aligned_cols=116 Identities=18% Similarity=0.281 Sum_probs=100.3
Q ss_pred ccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCccccc
Q 006816 102 TGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGP 181 (630)
Q Consensus 102 ~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~ 181 (630)
.|+||+++|+|+|+++|. ++++|+|++|||+|+ |...+|.+|++++||.+++|+||++|++...
T Consensus 411 ~g~mG~~l~aaiGa~la~--------------~~~~vv~~~GDG~f~--~~~~eL~ta~~~~l~~~~vv~NN~~~~~~~~ 474 (558)
T TIGR00118 411 LGTMGFGLPAAIGAKVAK--------------PESTVICITGDGSFQ--MNLQELSTAVQYDIPVKILILNNRYLGMVRQ 474 (558)
T ss_pred cccccchhhHHHhhhhhC--------------CCCcEEEEEcchHHh--ccHHHHHHHHHhCCCeEEEEEeCCchHHHHH
Confidence 388999999999999997 789999999999999 7888999999999998899999998876431
Q ss_pred cc----------cc--ChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeeccc
Q 006816 182 TS----------LV--LSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRE 238 (630)
Q Consensus 182 ~~----------~~--~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~ 238 (630)
.+ .. ...|+.+++++||+++++| + +.+++.++++++.+ .++|++|++.+.+.
T Consensus 475 ~q~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v---~-~~~~l~~al~~a~~-~~~p~liev~~~~~ 538 (558)
T TIGR00118 475 WQELFYEERYSHTHMGSLPDFVKLAEAYGIKGIRI---E-KPEELDEKLKEALS-SNEPVLLDVVVDKP 538 (558)
T ss_pred HHHHhcCCceeeccCCCCCCHHHHHHHCCCeEEEE---C-CHHHHHHHHHHHHh-CCCCEEEEEEeCCc
Confidence 11 11 1368999999999999999 5 89999999999987 68999999998653
No 128
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=99.47 E-value=1.7e-13 Score=153.99 Aligned_cols=115 Identities=12% Similarity=0.144 Sum_probs=98.5
Q ss_pred ccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCccccc
Q 006816 102 TGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGP 181 (630)
Q Consensus 102 ~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~ 181 (630)
-|+||+++|+|+|+++|. + ++++|++|||+|+ |+.++|.||++++||.++||+||++|++...
T Consensus 402 ~g~mG~glpaaiGa~lA~--------------~-~r~v~i~GDG~f~--m~~~EL~Ta~r~~lpv~~vV~NN~~y~~~~~ 464 (535)
T TIGR03394 402 YAGMGFGVPAGIGAQCTS--------------G-KRILTLVGDGAFQ--MTGWELGNCRRLGIDPIVILFNNASWEMLRV 464 (535)
T ss_pred cchhhhHHHHHHHHHhCC--------------C-CCeEEEEeChHHH--hHHHHHHHHHHcCCCcEEEEEECCccceeeh
Confidence 489999999999999986 3 4568899999999 9999999999999999999999999998654
Q ss_pred ccc------cChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeecc
Q 006816 182 TSL------VLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMR 237 (630)
Q Consensus 182 ~~~------~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k 237 (630)
.+. ....|+.+++++||.+..+| + +.++|.++++++.+..++|++|++.+-+
T Consensus 465 ~~~~~~~~~~~~~d~~~lA~a~G~~~~~v---~-~~~eL~~al~~a~~~~~~p~lIev~i~~ 522 (535)
T TIGR03394 465 FQPESAFNDLDDWRFADMAAGMGGDGVRV---R-TRAELAAALDKAFATRGRFQLIEAMLPR 522 (535)
T ss_pred hccCCCcccCCCCCHHHHHHHcCCCceEe---C-CHHHHHHHHHHHHhcCCCeEEEEEECCc
Confidence 321 12478999999999999999 5 8999999999987633568999998743
No 129
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=99.46 E-value=2.5e-13 Score=136.28 Aligned_cols=121 Identities=14% Similarity=0.143 Sum_probs=95.4
Q ss_pred ccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCccccc
Q 006816 102 TGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGP 181 (630)
Q Consensus 102 ~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~ 181 (630)
.|+||+++|.|+|++++..... .++++|+|++|||++.. +.+.++.++.++++|.+++|+||+.|++.+.
T Consensus 63 ~g~mG~GlpaAiGA~~a~~~~~---------~p~~~Vv~i~GDG~~~~-~g~~~l~ta~~~~l~i~ivVlNN~~yg~~~~ 132 (237)
T cd02018 63 ANAVASGLKRGLKARFPKDREL---------DKKKDVVVIGGDGATYD-IGFGALSHSLFRGEDITVIVLDNEVYSNTGG 132 (237)
T ss_pred HHHHHHHHHHHHHhhccccccc---------CCCCcEEEEeCchHHHh-ccHHHHHHHHHcCCCeEEEEECCccccCCCC
Confidence 4999999999999999821000 07899999999999841 3466889999999999999999998886542
Q ss_pred ccc-----------------cChhcHHHHHHhCCCeEEE---EeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeec
Q 006816 182 TSL-----------------VLSEDISARFKSLGWNTIM---VENIHDNLSSFKEALMAAANETKKPTFIRVKKM 236 (630)
Q Consensus 182 ~~~-----------------~~~~~~~~~~~a~G~~~~~---v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~ 236 (630)
.+. ....|+.+++++||+.+.. | . +++++.++++++.+..++|++|++.+.
T Consensus 133 q~~~~~~~g~~~~~~~~~~~~~~~D~~~iA~a~G~~~~~~~~v---~-~~~~l~~al~~al~~~~GP~lI~v~i~ 203 (237)
T cd02018 133 QRSGATPLGADSKMAPAGKKEDKKDLVLIAATHGCVYVARLSP---A-LKKHFLKVVKEAISRTDGPTFIHAYTP 203 (237)
T ss_pred CCCCCCcCCCcccccCCCCcCCCCCHHHHHHHCCCCEEEEEcc---C-CHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 211 1236899999999999986 6 4 899999999999741588999999864
No 130
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=99.46 E-value=1.7e-13 Score=156.03 Aligned_cols=118 Identities=16% Similarity=0.177 Sum_probs=100.5
Q ss_pred cccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCcccc
Q 006816 101 TTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDG 180 (630)
Q Consensus 101 ~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~ 180 (630)
..|+||+++|+|+|+++|. ++++|+|++|||+|+ |+..+|.+|+++++|.++||+||++|++..
T Consensus 433 ~~g~mG~glp~aiGa~la~--------------p~r~vv~i~GDG~f~--~~~~el~Ta~~~~lpv~ivV~NN~~y~~~~ 496 (588)
T PRK07525 433 SFGNCGYAFPAIIGAKIAC--------------PDRPVVGFAGDGAWG--ISMNEVMTAVRHNWPVTAVVFRNYQWGAEK 496 (588)
T ss_pred cccccccHHHHHHHHHHhC--------------CCCcEEEEEcCchHh--ccHHHHHHHHHhCCCeEEEEEeCchhHHHH
Confidence 3489999999999999998 789999999999999 888999999999999999999999998643
Q ss_pred cccc----------c--ChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhc--CCCcEEEEEeeccc
Q 006816 181 PTSL----------V--LSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANE--TKKPTFIRVKKMRE 238 (630)
Q Consensus 181 ~~~~----------~--~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~--~~~P~~i~~~t~k~ 238 (630)
..+. . ...|+.+++++||.++.+| + +.++|.++++++.+. .++|++|+|.+.+.
T Consensus 497 ~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v---~-~~~el~~al~~a~~~~~~~~p~lIev~~~~~ 564 (588)
T PRK07525 497 KNQVDFYNNRFVGTELDNNVSYAGIAEAMGAEGVVV---D-TQEELGPALKRAIDAQNEGKTTVIEIMCNQE 564 (588)
T ss_pred HHHHHHhCCCcccccCCCCCCHHHHHHHCCCeEEEE---C-CHHHHHHHHHHHHhcCCCCCcEEEEEEeccc
Confidence 2111 1 1358999999999999999 5 899999999988752 25899999998643
No 131
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=99.46 E-value=3.3e-13 Score=152.68 Aligned_cols=115 Identities=18% Similarity=0.187 Sum_probs=97.3
Q ss_pred ccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCccccc
Q 006816 102 TGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGP 181 (630)
Q Consensus 102 ~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~ 181 (630)
.|+||+++|+|+|+++|. +++|+|++|||+|+ |+.++|.||++++||.++||+||++|.....
T Consensus 416 ~gsmG~~lpaaiGaala~---------------~~~vv~i~GDGsf~--m~~~EL~Ta~r~~l~v~~vV~NN~~~~~~~~ 478 (554)
T TIGR03254 416 WGVMGIGMGYAIAAAVET---------------GKPVVALEGDSAFG--FSGMEVETICRYNLPVCVVIFNNGGIYRGDD 478 (554)
T ss_pred CCcCCchHHHHHHHHhcC---------------CCcEEEEEcCchhc--ccHHHHHHHHHcCCCEEEEEEeChhhhhhhh
Confidence 489999999999999973 57899999999999 9999999999999999999999988632100
Q ss_pred --------cccc--ChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeeccc
Q 006816 182 --------TSLV--LSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRE 238 (630)
Q Consensus 182 --------~~~~--~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~ 238 (630)
.... ...|+.+++++||++..+| . +.++|.++++++.+ .++|++|+|.+-+.
T Consensus 479 ~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v---~-~~~el~~al~~a~~-~~~p~lIev~id~~ 540 (554)
T TIGR03254 479 VNVVGADPAPTVLVHGARYDKMMKAFGGVGYNV---T-TPDELKAALNEALA-SGKPTLINAVIDPS 540 (554)
T ss_pred hhhcCCCCCccccCCCCCHHHHHHHCCCeEEEe---C-CHHHHHHHHHHHHh-CCCCEEEEEEECCC
Confidence 0011 2468999999999999999 5 99999999999987 68999999998544
No 132
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=99.45 E-value=3.8e-13 Score=152.62 Aligned_cols=115 Identities=20% Similarity=0.203 Sum_probs=97.2
Q ss_pred ccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCC--ccc
Q 006816 102 TGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHN--TID 179 (630)
Q Consensus 102 ~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~--~i~ 179 (630)
.|+||+++|+|+|+++|. +++|+|++|||+|+ |+.++|.||+++++|.++||+||++| ...
T Consensus 423 ~gsmG~glpaaiGa~la~---------------~~~vv~i~GDG~f~--m~~~EL~Ta~r~~lpi~~vV~NN~~~~~~~~ 485 (569)
T PRK09259 423 WGVMGIGMGYAIAAAVET---------------GKPVVAIEGDSAFG--FSGMEVETICRYNLPVTVVIFNNGGIYRGDD 485 (569)
T ss_pred CccccccHHHHHHHHhcC---------------CCcEEEEecCcccc--ccHHHHHHHHHcCCCEEEEEEeChhHHHHHH
Confidence 499999999999999974 56899999999999 99999999999999999999999875 111
Q ss_pred c------ccc-c--cChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeeccc
Q 006816 180 G------PTS-L--VLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRE 238 (630)
Q Consensus 180 ~------~~~-~--~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~ 238 (630)
. ... . ....|+.+++++||+++++| + +.++|.++++++.+ .++|++|+|.+.+.
T Consensus 486 ~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v---~-~~~el~~al~~a~~-~~~p~lIev~id~~ 548 (569)
T PRK09259 486 VNLSGAGDPSPTVLVHHARYDKMMEAFGGVGYNV---T-TPDELRHALTEAIA-SGKPTLINVVIDPA 548 (569)
T ss_pred HHhhcCCCccccccCCCCCHHHHHHHCCCeEEEE---C-CHHHHHHHHHHHHh-CCCCEEEEEEECCC
Confidence 0 100 1 12568999999999999999 5 99999999999987 78999999998654
No 133
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=99.44 E-value=3.6e-13 Score=152.75 Aligned_cols=116 Identities=20% Similarity=0.241 Sum_probs=96.6
Q ss_pred ccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCccccc
Q 006816 102 TGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGP 181 (630)
Q Consensus 102 ~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~ 181 (630)
.|+||+++|+|+|+++|. |+++|+|++|||+|+.+..-+++++|+++++|.++||+||++|++...
T Consensus 429 ~gsmG~~lp~aiGa~la~--------------p~~~vv~i~GDG~f~~~~~e~~l~ta~~~~l~~~ivv~NN~~yg~~~~ 494 (569)
T PRK08327 429 AGGLGWALGAALGAKLAT--------------PDRLVIATVGDGSFIFGVPEAAHWVAERYGLPVLVVVFNNGGWLAVKE 494 (569)
T ss_pred CCCCCcchHHHHHHhhcC--------------CCCeEEEEecCcceeecCcHHHHHHHHHhCCCEEEEEEeCcccccchh
Confidence 489999999999999987 899999999999999654445799999999998899999989987531
Q ss_pred c-----------------ccc--ChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhc---CCCcEEEEEee
Q 006816 182 T-----------------SLV--LSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANE---TKKPTFIRVKK 235 (630)
Q Consensus 182 ~-----------------~~~--~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~---~~~P~~i~~~t 235 (630)
. ... ...|+.+++++||+.+.+| + +.+++.++++++.+. .++|++|++.+
T Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v---~-~~~el~~al~~a~~~~~~~~gp~liev~v 566 (569)
T PRK08327 495 AVLEVYPEGYAARKGTFPGTDFDPRPDFAKIAEAFGGYGERV---E-DPEELKGALRRALAAVRKGRRSAVLDVIV 566 (569)
T ss_pred HHhhhCcccccccccccccccCCCCCCHHHHHHhCCCCceEe---C-CHHHHHHHHHHHHHHHhcCCCcEEEEEEc
Confidence 1 011 2468999999999999999 5 899999999988651 26899999975
No 134
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.43 E-value=8.3e-13 Score=134.52 Aligned_cols=118 Identities=16% Similarity=0.064 Sum_probs=99.3
Q ss_pred ccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEccc-ccCchhHHHHHHHhHHcCCCcEEEEEECCCCcccc
Q 006816 102 TGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDG-CAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDG 180 (630)
Q Consensus 102 ~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG-~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~ 180 (630)
.|.+|.++|+|+|+++|+ |+.+||+++||| +++ +..++|.+|++++++.+++|+||+.|++.+
T Consensus 58 ~~~~G~alp~A~GaklA~--------------Pd~~VV~i~GDG~~f~--ig~~eL~tA~rrn~~i~vIV~nN~~ygmtg 121 (279)
T PRK11866 58 HGIHGRVLPIATGVKWAN--------------PKLTVIGYGGDGDGYG--IGLGHLPHAARRNVDITYIVSNNQVYGLTT 121 (279)
T ss_pred ccccccHHHHHHHHHHHC--------------CCCcEEEEECChHHHH--ccHHHHHHHHHHCcCcEEEEEEChhhhhhc
Confidence 477899999999999998 899999999999 688 678899999999999999999999888765
Q ss_pred ccccc----------C-------hhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeecc
Q 006816 181 PTSLV----------L-------SEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMR 237 (630)
Q Consensus 181 ~~~~~----------~-------~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k 237 (630)
.++.. . ..|+.++++++|..++...+.. +++++.+++++|.+ .++|++|++.+.-
T Consensus 122 gQ~s~~t~~g~~t~~t~~g~~~~~~d~~~iA~a~G~~~Va~~~~~-~~~~l~~~l~~Al~-~~Gps~I~v~~pC 193 (279)
T PRK11866 122 GQASPTTPRGVKTKTTPDGNIEEPFNPIALALAAGATFVARGFSG-DVKHLKEIIKEAIK-HKGFSFIDVLSPC 193 (279)
T ss_pred ccccCCCCCCceeeccCCCCCCCCCCHHHHHHHCCCCEEEEEcCC-CHHHHHHHHHHHHh-CCCCEEEEEeCCC
Confidence 32210 0 1389999999999876544556 89999999999998 7999999998543
No 135
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.43 E-value=6.2e-13 Score=135.38 Aligned_cols=117 Identities=11% Similarity=0.009 Sum_probs=97.3
Q ss_pred cccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhH-HHHHHHhHHcCCCcEEEEEECCCCccccc
Q 006816 103 GPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGIS-HEAAALAAHWKLNKLTLIYDDNHNTIDGP 181 (630)
Q Consensus 103 G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~-~eal~~a~~~~L~~li~i~~~N~~~i~~~ 181 (630)
+.+|.++|+|+|+++|. ++++|||++|||+++ +. .++|.+|+++++|.+++|+||+.|++.+.
T Consensus 60 ~~mG~alp~AiGaklA~--------------pd~~VVai~GDG~~~--~iG~~eL~tA~r~nl~i~~IV~NN~~Yg~t~~ 123 (280)
T PRK11869 60 TLHGRAIPAATAVKATN--------------PELTVIAEGGDGDMY--AEGGNHLIHAIRRNPDITVLVHNNQVYGLTKG 123 (280)
T ss_pred cccccHHHHHHHHHHHC--------------CCCcEEEEECchHHh--hCcHHHHHHHHHhCcCcEEEEEECHHHhhhcc
Confidence 55899999999999997 889999999999987 44 78999999999999999999998876432
Q ss_pred ccc-----------------cChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeecc
Q 006816 182 TSL-----------------VLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMR 237 (630)
Q Consensus 182 ~~~-----------------~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k 237 (630)
+.. ....|+.++++++|..++...+-. +++++.+++++|.+ .++|++|++.+.-
T Consensus 124 Q~s~~t~~g~~~~~~p~g~~~~~~D~~~lA~a~G~~~va~~~~~-~~~~l~~~i~~Al~-~~Gp~lIeV~~pC 194 (280)
T PRK11869 124 QASPTTLKGFKTPTQPWGVFEEPFNPIALAIALDASFVARTFSG-DIEETKEILKEAIK-HKGLAIVDIFQPC 194 (280)
T ss_pred eecCCCCCCcccccCCCCccCCCCCHHHHHHHCCCCEEEEeCCC-CHHHHHHHHHHHHh-CCCCEEEEEECCC
Confidence 110 013589999999999988832235 89999999999998 7999999998644
No 136
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=99.41 E-value=4.6e-13 Score=152.10 Aligned_cols=113 Identities=18% Similarity=0.109 Sum_probs=97.3
Q ss_pred ccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCccccc
Q 006816 102 TGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGP 181 (630)
Q Consensus 102 ~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~ 181 (630)
.|+||+++|+|+|+++|. +++|+|++|||+|+ |...+|.+|+++++|.++||+||++|++...
T Consensus 424 ~~~~G~~lpaaiGaala~---------------~~~vv~i~GDGsf~--~~~~eL~Ta~r~~l~i~ivVlNN~g~~~~~~ 486 (568)
T PRK07449 424 ASGIDGLLSTAAGVARAS---------------AKPTVALIGDLSFL--HDLNGLLLLKQVPAPLTIVVVNNNGGGIFSL 486 (568)
T ss_pred ccchhhHHHHHHHHHhcC---------------CCCEEEEechHHhh--cCcHHHHhhcccCCCeEEEEEECCCCccccC
Confidence 478999999999999972 57899999999999 7788999999999999999999999885432
Q ss_pred cc-------------ccChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeec
Q 006816 182 TS-------------LVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKM 236 (630)
Q Consensus 182 ~~-------------~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~ 236 (630)
.. .....|+.+++++||+++.+| + +.++|.++++++.+ .++|++|+|.+-
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~~V---~-~~~eL~~al~~a~~-~~~p~lIev~id 549 (568)
T PRK07449 487 LPQPEEEPVFERFFGTPHGVDFAHAAAMYGLEYHRP---E-TWAELEEALADALP-TPGLTVIEVKTN 549 (568)
T ss_pred CCCCCCcchhhHhhcCCCCCCHHHHHHHcCCCccCC---C-CHHHHHHHHHHHhc-CCCCEEEEEeCC
Confidence 21 112468999999999999999 5 99999999999987 789999999874
No 137
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=99.40 E-value=1.3e-11 Score=130.85 Aligned_cols=204 Identities=17% Similarity=0.142 Sum_probs=147.2
Q ss_pred CCccccccchHHHHHHHHHHHhcCCCCceEeeehHHHHHhhHHHHHHhcccCCCeEEEEecCCCCCCCCCCCCCChhhhH
Q 006816 365 GRNIRYGVREHAMAGISNGVALHGGGLIPFAATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQLA 444 (630)
Q Consensus 365 ~R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~~g~~G~tHq~~~d~a 444 (630)
..|++ .-.|...+++|.|.|..| .|.++.|=+..+.+++++|-.++.+.+|++++. ..+.+.+. |.|+....|+-
T Consensus 49 ~~~vq-~E~E~aA~~~a~GAs~aG--~Ra~taTSg~Gl~lm~E~l~~a~~~e~P~v~v~-v~R~~p~~-g~t~~eq~D~~ 123 (352)
T PRK07119 49 GVFVQ-AESEVAAINMVYGAAATG--KRVMTSSSSPGISLKQEGISYLAGAELPCVIVN-IMRGGPGL-GNIQPSQGDYF 123 (352)
T ss_pred CEEEe-eCcHHHHHHHHHHHHhhC--CCEEeecCcchHHHHHHHHHHHHHccCCEEEEE-eccCCCCC-CCCcchhHHHH
Confidence 44566 678999999999999999 999999988899999999999999999988875 34444443 45777777875
Q ss_pred Hhhc-----CCCcEEEecCChHHHHHHHHHHHHc---CCCcEEEEEc------CCCcc-cc---cCCCccccccccc---
Q 006816 445 GLRA-----VPRLLAFRPADGNETAGSYRVAIAN---RDVPSVIALS------RQKIA-AN---LEGTSADEVERGG--- 503 (630)
Q Consensus 445 ~l~~-----iP~l~v~~P~d~~e~~~~l~~a~~~---~~~P~~ir~~------r~~~~-~~---~~~~~~~~~~~G~--- 503 (630)
+.+. --++.|+.|+|++|+..+...|++- ..-|++++.. ++.+. +. ...........|.
T Consensus 124 ~~~~~~ghgd~~~~vl~p~~~qEa~d~~~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 203 (352)
T PRK07119 124 QAVKGGGHGDYRLIVLAPSSVQEMVDLTMLAFDLADKYRNPVMVLGDGVLGQMMEPVEFPPRKKRPLPPKDWAVTGTKGR 203 (352)
T ss_pred HHHhcCCCCCcceEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcchhhhCceeeecCCchhhcccCCCCCccCCCCCC
Confidence 5532 2248999999999999988887643 3569999753 22110 10 0000000000110
Q ss_pred -----------------------------------EEEecCCCCCCCcEEEEEeCchHHHHHHHHHHHHhcCCceEEEEc
Q 006816 504 -----------------------------------YIVSDNSSENKPEIILIGTGTELSLCEGTAKTLRQEGRRVRVVSL 548 (630)
Q Consensus 504 -----------------------------------~~~~~~~~~G~~dvtiva~G~~v~~a~~aa~~L~~~gi~~~Vi~~ 548 (630)
+.... .++ .|++||++|+++..|++|++.|+++|++++||++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~e~~~--~~d-ad~~iva~Gs~~~~a~eA~~~L~~~Gi~v~vi~~ 280 (352)
T PRK07119 204 RKNIITSLFLDPEELEKHNLRLQEKYAKIEENEVRYEEYN--TED-AELVLVAYGTSARIAKSAVDMAREEGIKVGLFRP 280 (352)
T ss_pred ceeccCCcccCHHHHHHHHHHHHHHHHHHHhhCCcceeec--CCC-CCEEEEEcCccHHHHHHHHHHHHHcCCeEEEEee
Confidence 01111 123 7999999999999999999999999999999999
Q ss_pred ccccccCcccHHHHhccCCCCCeeEEEEecCC
Q 006816 549 VCWRLFDRQPAEYKEKVLPSRVVKRVSVEAGS 580 (630)
Q Consensus 549 ~~i~pld~~~~~~~~~v~~~~~~~~v~vEe~~ 580 (630)
++++|||.+.+. ..++...++ +|+|++.
T Consensus 281 ~~l~Pfp~~~i~---~~l~~~k~V-ivvE~n~ 308 (352)
T PRK07119 281 ITLWPFPEKALE---ELADKGKGF-LSVEMSM 308 (352)
T ss_pred ceecCCCHHHHH---HHHhCCCEE-EEEeCCc
Confidence 999999999775 234434355 9999983
No 138
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=99.40 E-value=1.7e-12 Score=133.35 Aligned_cols=117 Identities=16% Similarity=0.129 Sum_probs=96.6
Q ss_pred cccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccc-cCchhHHHHHHHhHHcCCCcEEEEEECCCCccccc
Q 006816 103 GPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGC-AMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGP 181 (630)
Q Consensus 103 G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~-~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~ 181 (630)
|.+|+++|+|+|+++|+ |+++|||++|||+ ++ +...+|.+|+++++|.+++|+||+.|++.+.
T Consensus 69 g~mG~alpaAiGaklA~--------------Pd~~VV~i~GDG~~f~--mg~~eL~tA~r~nl~i~vIV~NN~~yGmt~~ 132 (286)
T PRK11867 69 TIHGRALAIATGLKLAN--------------PDLTVIVVTGDGDALA--IGGNHFIHALRRNIDITYILFNNQIYGLTKG 132 (286)
T ss_pred hhhhcHHHHHHHHHHhC--------------CCCcEEEEeCccHHHh--CCHHHHHHHHHhCCCcEEEEEeCHHHhhhcC
Confidence 78999999999999998 8999999999995 87 6678999999999999999999999987543
Q ss_pred ccc-----------c------ChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeecc
Q 006816 182 TSL-----------V------LSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMR 237 (630)
Q Consensus 182 ~~~-----------~------~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k 237 (630)
... . ...++.+++.++|...+....-. +++++.+++++|.+ .++|++|++.+.-
T Consensus 133 q~s~tt~~g~~~~~~~~g~~~~~~d~~~lA~a~Ga~~va~~~~~-~~~el~~al~~Al~-~~Gp~lIev~~~C 203 (286)
T PRK11867 133 QYSPTSPVGFVTKTTPYGSIEPPFNPVELALGAGATFVARGFDS-DVKQLTELIKAAIN-HKGFSFVEILQPC 203 (286)
T ss_pred ccCCCCCCCcccccccCCCCCCCCCHHHHHHHCCCcEEEEecCC-CHHHHHHHHHHHHh-CCCCEEEEEeCCC
Confidence 210 0 02578899999999876421224 89999999999987 7899999998643
No 139
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=99.39 E-value=1.1e-11 Score=140.99 Aligned_cols=231 Identities=15% Similarity=0.159 Sum_probs=161.3
Q ss_pred ccchHHHHHHHHHHHhcCCCCceEeeehHHHHHhhHHHHHHhc--ccCCCeEEEEecCCCCCCCCCCCCCChhhhHHhhc
Q 006816 371 GVREHAMAGISNGVALHGGGLIPFAATFLIFSDYMKNSIRLSA--LSHAGVIYILTHDSIGLGEDGPTHQPVEQLAGLRA 448 (630)
Q Consensus 371 gIaE~~~vg~a~GlA~~G~~~~pv~~~~~~F~~~a~dqi~~~a--~~~~pv~~v~~~~g~~~g~~G~tHq~~~d~a~l~~ 448 (630)
...|...+.++.|-|..| .|.++.|=..=+.++.|+|...+ -+.+|++++. .++ .|+ ++|+..+.|.-+.+.
T Consensus 52 ~~~E~~a~~~~~GAs~aG--~ra~t~ts~~Gl~~~~e~l~~~~~~g~~~~iV~~~-~~~--~gp-~~~~~~q~d~~~~~~ 125 (595)
T TIGR03336 52 SVNEKVAVEVAAGAAWSG--LRAFCTMKHVGLNVAADPLMTLAYTGVKGGLVVVV-ADD--PSM-HSSQNEQDTRHYAKF 125 (595)
T ss_pred CcCHHHHHHHHHHHHhcC--cceEEEccCCchhhhHHHhhhhhhhcCcCceEEEE-ccC--CCC-ccchhhHhHHHHHHh
Confidence 348999999999999999 99999875555568889987765 3477788775 344 233 477777777766665
Q ss_pred CCCcEEEecCChHHHHHHHHHHHHc---CCCcEEEEEcC------CCcc-cccCCC-cc--cccccc-------------
Q 006816 449 VPRLLAFRPADGNETAGSYRVAIAN---RDVPSVIALSR------QKIA-ANLEGT-SA--DEVERG------------- 502 (630)
Q Consensus 449 iP~l~v~~P~d~~e~~~~l~~a~~~---~~~P~~ir~~r------~~~~-~~~~~~-~~--~~~~~G------------- 502 (630)
-++.|+.|+|.+|+..+...|++- ..-|+++++.. +.+. +..+.. .. ...+..
T Consensus 126 -~~~~vl~p~~~qE~~d~~~~Af~lae~~~~PV~v~~d~~l~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (595)
T TIGR03336 126 -AKIPCLEPSTPQEAKDMVKYAFELSEKFGLPVILRPTTRISHMRGDVELGEIPKEEVVKGFEKDPERYVMVPAIARVRH 204 (595)
T ss_pred -cCCeEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEeeeeccceeeEecCCCcccccccCCCCChhhcCCCchhHHHHH
Confidence 478899999999999998888643 36799997631 1110 000000 00 000000
Q ss_pred -----------------cEEEecCCCCCCCcEEEEEeCchHHHHHHHHHHHHhcCCceEEEEcccccccCcccHHHHhcc
Q 006816 503 -----------------GYIVSDNSSENKPEIILIGTGTELSLCEGTAKTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKV 565 (630)
Q Consensus 503 -----------------~~~~~~~~~~G~~dvtiva~G~~v~~a~~aa~~L~~~gi~~~Vi~~~~i~pld~~~~~~~~~v 565 (630)
.|.... .++ .|++||++|++++.|+++++.| |++++|+++++++|||.+.+. .+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~--~~~-~di~iv~~G~~~~~a~ea~~~~---Gi~~~v~~~~~i~Pld~~~i~---~~ 275 (595)
T TIGR03336 205 KKLLSKQHKLREELNESPLNRLE--ING-AKIGVIASGIAYNYVKEALERL---GVDVSVLKIGFTYPVPEGLVE---EF 275 (595)
T ss_pred HHHHHHHHHHHHHHHhCCCceec--cCC-CCEEEEEcCHHHHHHHHHHHHc---CCCeEEEEeCCCCCCCHHHHH---HH
Confidence 011111 124 7999999999999999987665 999999999999999999775 33
Q ss_pred CCCCCeeEEEEecCCcccccc----cc---cCcceEEEe-ccCCCCCCHHHHHHHcCCChHHHHHHHHHh
Q 006816 566 LPSRVVKRVSVEAGSSVGWRE----YV---GVEGKVIGV-EEFGASGAYLDTFKKYGFTIDNVTKVARSL 627 (630)
Q Consensus 566 ~~~~~~~~v~vEe~~~~g~~~----~~---~~~~~~~g~-d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~ 627 (630)
++...++ ||+||+.. ++++ ++ +.+++++|+ |.|++ +..+||++.|.++++++
T Consensus 276 ~~~~~~v-ivvEe~~~-~~~~~~~~~~~~~~~~v~~~G~~d~fi~--------~~~~Ld~~~i~~~i~~~ 335 (595)
T TIGR03336 276 LSGVEEV-LVVEELEP-VVEEQVKALAGTAGLNIKVHGKEDGFLP--------REGELNPDIVVNALAKF 335 (595)
T ss_pred HhcCCeE-EEEeCCcc-HHHHHHHHHHHhcCCCeEEecccCCccC--------cccCcCHHHHHHHHHHh
Confidence 4434355 99999983 3321 11 125688999 88887 46799999999999774
No 140
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=99.37 E-value=2e-12 Score=132.15 Aligned_cols=115 Identities=16% Similarity=0.187 Sum_probs=93.7
Q ss_pred cccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCcccccc
Q 006816 103 GPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGPT 182 (630)
Q Consensus 103 G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~~ 182 (630)
+.+|+++|+|+|+++|+ |+++|||++|||++. ++..++|.+|+++++|.+++|+||+.|++.+..
T Consensus 53 t~mG~alPaAiGaklA~--------------Pd~~VVai~GDG~f~-~mg~~eL~tA~r~nl~I~vIVlNN~~yGmt~gQ 117 (287)
T TIGR02177 53 GLHGRALPVATGIKLAN--------------PHLKVIVVGGDGDLY-GIGGNHFVAAGRRNVDITVIVHDNQVYGLTKGQ 117 (287)
T ss_pred cccccHHHHHHHHHHHC--------------CCCcEEEEeCchHHH-hccHHHHHHHHHhCcCeEEEEEECHHHHhhhcc
Confidence 55799999999999998 899999999999973 467889999999999999999999998876533
Q ss_pred cc-c------------------ChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeec
Q 006816 183 SL-V------------------LSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKM 236 (630)
Q Consensus 183 ~~-~------------------~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~ 236 (630)
+. . ...++.++++++|+..... - . +++++.+++++|.+ .++|++|++.+.
T Consensus 118 ~sp~t~~G~~~~~~~~g~~~~~~np~~~a~A~g~g~va~~~-~-~-~~~eL~~ai~~Al~-~~GpslIeV~~p 186 (287)
T TIGR02177 118 ASPTLLKGVKTKSLPYPNIQDPVNPLLLAIALGYTFVARGF-S-G-DVAHLKEIIKEAIN-HKGYALVDILQP 186 (287)
T ss_pred cccCccCCcceeecccCccCCCCCHHHHHHhCCCCeEEEEe-c-C-CHHHHHHHHHHHHh-CCCCEEEEEeCC
Confidence 21 0 1234567777888777763 1 5 89999999999998 799999999864
No 141
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=99.35 E-value=2.5e-12 Score=136.37 Aligned_cols=119 Identities=20% Similarity=0.263 Sum_probs=100.7
Q ss_pred cccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCcc
Q 006816 99 EVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTI 178 (630)
Q Consensus 99 ~~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i 178 (630)
..-.|++|+.+|+|+|+++|. ++++++.++|||++| ++.+++.+..+++|+.++||+||+||.|
T Consensus 407 Q~lWGSIG~t~pAalGa~~A~--------------~drR~IL~iGDGs~Q--lTvQEiStmiR~gl~p~ifvlNN~GYTI 470 (557)
T COG3961 407 QPLWGSIGYTLPAALGAALAA--------------PDRRVILFIGDGSLQ--LTVQEISTMIRWGLKPIIFVLNNDGYTI 470 (557)
T ss_pred ccchhhcccccHhhhhhhhcC--------------CCccEEEEEcCchhh--hhHHHHHHHHHcCCCcEEEEEcCCCcEE
Confidence 345699999999999999999 899999999999999 9999999999999999999999999999
Q ss_pred cccccc-------cChhcHHHHHHhCCC---eE-EEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeecc
Q 006816 179 DGPTSL-------VLSEDISARFKSLGW---NT-IMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMR 237 (630)
Q Consensus 179 ~~~~~~-------~~~~~~~~~~~a~G~---~~-~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k 237 (630)
++.... ...+|+.++.++||. +. ..+ . ..+.+..+++.+.+..+++++|||+..+
T Consensus 471 Er~IHg~~~~YNdI~~Wd~~~l~~afg~~~~~~~~~~---~-~~~~l~~~~~~~~~~~~~i~lIEv~lp~ 536 (557)
T COG3961 471 ERAIHGPTAPYNDIQSWDYTALPEAFGAKNGEAKFRA---T-TGEELALALDVAFANNDRIRLIEVMLPV 536 (557)
T ss_pred EehhcCCCcCcccccccchhhhhhhcCCCCceEEEee---c-ChHHHHHHHHHHhcCCCceEEEEEecCc
Confidence 876643 235788888999974 44 334 3 6778888998887656799999997644
No 142
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=99.33 E-value=4.7e-12 Score=143.92 Aligned_cols=116 Identities=20% Similarity=0.158 Sum_probs=100.0
Q ss_pred ccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhH-HHHHHHhHHcCCCcEEEEEECCCCcccc
Q 006816 102 TGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGIS-HEAAALAAHWKLNKLTLIYDDNHNTIDG 180 (630)
Q Consensus 102 ~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~-~eal~~a~~~~L~~li~i~~~N~~~i~~ 180 (630)
.|+||+++|.|+|+++|. ++++|+|++|||+|+ +. +++|.+|+++++|.+++|+||+.|++.+
T Consensus 402 ~~~mG~~~~~AiGa~~a~--------------p~~~Vv~i~GDG~f~--~~g~~eL~tav~~~~~i~~vVlnN~~~g~~~ 465 (595)
T TIGR03336 402 TLCMGASIGVASGLSKAG--------------EKQRIVAFIGDSTFF--HTGIPGLINAVYNKANITVVILDNRITAMTG 465 (595)
T ss_pred eeccCchHHHHhhhhhcC--------------CCCCEEEEeccchhh--hcCHHHHHHHHHcCCCeEEEEEcCcceeccC
Confidence 589999999999999997 889999999999998 76 7899999999999999999999998766
Q ss_pred ccccc-----------ChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEee
Q 006816 181 PTSLV-----------LSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKK 235 (630)
Q Consensus 181 ~~~~~-----------~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t 235 (630)
..+.. ...|+.++++++|+++.++.+-. +++++.++++++.+ .++|++|+++.
T Consensus 466 ~q~~~~~~~~~~~~~~~~~d~~~ia~a~G~~~~~v~~~~-~l~~l~~al~~a~~-~~gp~li~v~~ 529 (595)
T TIGR03336 466 HQPNPGTGVTGMGEATKEISIEELCRASGVEFVEVVDPL-NVKETIEVFKAALA-AEGVSVIIAKQ 529 (595)
T ss_pred CCCCCCCCCCCCCCcCCCcCHHHHHHHcCCCEEEEeCcC-CHHHHHHHHHHHHh-cCCCEEEEEcc
Confidence 43210 13689999999999999995655 77888999999987 78999999864
No 143
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=99.23 E-value=7.2e-11 Score=110.58 Aligned_cols=119 Identities=24% Similarity=0.201 Sum_probs=99.1
Q ss_pred CCCCCccccccchHHHHHHHHHHHhcCCCCceEeee-hHHHHHhhHHHHHHhcccCCCeEEEEecCCCCCCCCCCCCCCh
Q 006816 362 SPWGRNIRYGVREHAMAGISNGVALHGGGLIPFAAT-FLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPV 440 (630)
Q Consensus 362 ~~p~R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~~-~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~~g~~G~tHq~~ 440 (630)
+.+++.+..++.|++++++|.|+|+.| .+|++.+ +.+|+.++++||+.++..++||+++.+..+. .+.++.+||.+
T Consensus 32 ~~~~~~~~~~~~E~~a~~~A~G~a~~~--~~~v~~~~~gpg~~~~~~~l~~a~~~~~Pvl~i~~~~~~-~~~~~~~~q~~ 108 (154)
T cd06586 32 EGDKRIIDTVIHELGAAGAAAGYARAG--GPPVVIVTSGTGLLNAINGLADAAAEHLPVVFLIGARGI-SAQAKQTFQSM 108 (154)
T ss_pred ccCCceEEeeCCHHHHHHHHHHHHHhh--CCEEEEEcCCCcHHHHHHHHHHHHhcCCCEEEEeCCCCh-hhhccCccccc
Confidence 467999999999999999999999999 5888775 6999999999999888889999999754443 34457789999
Q ss_pred hhhHHhhcCCCcEEEecCChHHHHHHHHH---HHHcCCCcEEEEEcC
Q 006816 441 EQLAGLRAVPRLLAFRPADGNETAGSYRV---AIANRDVPSVIALSR 484 (630)
Q Consensus 441 ~d~a~l~~iP~l~v~~P~d~~e~~~~l~~---a~~~~~~P~~ir~~r 484 (630)
+++++++.+|++.+..|++.++...+.+. +... .+|++|++++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~-~gPv~l~ip~ 154 (154)
T cd06586 109 FDLGMYRSIPEANISSPSPAELPAGIDHAIRTAYAS-QGPVVVRLPR 154 (154)
T ss_pred CHHHHHHHhhheEEEeCCHHHHHHHHHHHHHHHhcC-CCCEEEEccC
Confidence 99999999999999999887766555433 3344 7899999874
No 144
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=99.23 E-value=5.3e-10 Score=119.60 Aligned_cols=203 Identities=18% Similarity=0.183 Sum_probs=145.0
Q ss_pred CCccccccchHHHHHHHHHHHhcCCCCceEeeehHHHHHhhHHHHHHhcccCCCeEEEEecCCCCCCCCCCCCCChhhhH
Q 006816 365 GRNIRYGVREHAMAGISNGVALHGGGLIPFAATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQLA 444 (630)
Q Consensus 365 ~R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~~g~~G~tHq~~~d~a 444 (630)
..|++.- +|..++++|.|-|..| .|.+..|=+.=+.++.+++-.++..++|++++. .++.+.+..-+|+....|+-
T Consensus 49 ~~~vq~E-~E~aA~~~a~GAs~aG--~Ra~TaTSg~Gl~lm~E~~~~a~~~e~P~Viv~-~~R~gp~tg~p~~~~q~D~~ 124 (376)
T PRK08659 49 GVFIQME-DEIASMAAVIGASWAG--AKAMTATSGPGFSLMQENIGYAAMTETPCVIVN-VQRGGPSTGQPTKPAQGDMM 124 (376)
T ss_pred CEEEEeC-chHHHHHHHHhHHhhC--CCeEeecCCCcHHHHHHHHHHHHHcCCCEEEEE-eecCCCCCCCCCCcCcHHHH
Confidence 4566766 9999999999999999 999988766666789999988888899988875 45554433347787777766
Q ss_pred Hhh-----cCCCcEEEecCChHHHHHHHHHHHHc---CCCcEEEEEc------CCCcc-c---ccC-------C---C--
Q 006816 445 GLR-----AVPRLLAFRPADGNETAGSYRVAIAN---RDVPSVIALS------RQKIA-A---NLE-------G---T-- 494 (630)
Q Consensus 445 ~l~-----~iP~l~v~~P~d~~e~~~~l~~a~~~---~~~P~~ir~~------r~~~~-~---~~~-------~---~-- 494 (630)
..+ .+ ++.|+.|+|.+|+..+...|++- ...|++++.. +..+. + .+. . .
T Consensus 125 ~~~~~~hgd~-~~ivl~p~~~QEa~d~~~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 203 (376)
T PRK08659 125 QARWGTHGDH-PIIALSPSSVQECFDLTIRAFNLAEKYRTPVIVLADEVVGHMREKVVLPEPDEIEIIERKLPKVPPEAY 203 (376)
T ss_pred HHhcccCCCc-CcEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechHhhCCcccccCCChhhccccccccCCCCcccc
Confidence 555 22 36899999999999988887643 3579999753 11110 0 000 0 0
Q ss_pred cccc-----cc----cc--cE------------------------------------------EEecCCCCCCCcEEEEE
Q 006816 495 SADE-----VE----RG--GY------------------------------------------IVSDNSSENKPEIILIG 521 (630)
Q Consensus 495 ~~~~-----~~----~G--~~------------------------------------------~~~~~~~~G~~dvtiva 521 (630)
.++. ++ .| .+ .... .++ .|++||+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~--~~~-ad~~iv~ 280 (376)
T PRK08659 204 KPFDDPEGGVPPMPAFGDGYRFHVTGLTHDERGFPTTDPETHEKLVRRLVRKIEKNRDDIVLYEEYM--LED-AEVVVVA 280 (376)
T ss_pred CCCCCCCCCCCCCccCCCCCeEEeCCccccCCCCcCcCHHHHHHHHHHHHHHHHHHHhhcCCceeec--CCC-CCEEEEE
Confidence 0000 00 01 11 0111 124 7899999
Q ss_pred eCchHHHHHHHHHHHHhcCCceEEEEcccccccCcccHHHHhccCCCCCeeEEEEecC
Q 006816 522 TGTELSLCEGTAKTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLPSRVVKRVSVEAG 579 (630)
Q Consensus 522 ~G~~v~~a~~aa~~L~~~gi~~~Vi~~~~i~pld~~~~~~~~~v~~~~~~~~v~vEe~ 579 (630)
+|++...+++|++.|+++|+++.++++++++|||.+.+. ..++...++ +|+|++
T Consensus 281 ~Gs~~~~a~eAv~~Lr~~G~~v~~l~~~~l~Pfp~~~i~---~~~~~~k~V-ivvEe~ 334 (376)
T PRK08659 281 YGSVARSARRAVKEAREEGIKVGLFRLITVWPFPEEAIR---ELAKKVKAI-VVPEMN 334 (376)
T ss_pred eCccHHHHHHHHHHHHhcCCceEEEEeCeecCCCHHHHH---HHHhcCCEE-EEEeCC
Confidence 999999999999999999999999999999999998765 344444455 999999
No 145
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=99.19 E-value=5.2e-11 Score=148.90 Aligned_cols=116 Identities=15% Similarity=0.217 Sum_probs=98.8
Q ss_pred cccccch--hHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHc--CCCcEEEEEECCCC
Q 006816 101 TTGPLGQ--GVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHW--KLNKLTLIYDDNHN 176 (630)
Q Consensus 101 ~~G~lG~--~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~--~L~~li~i~~~N~~ 176 (630)
.-|.||+ ++|.|+|++++. +++|+|++|||+|+ |..++|.+|+++ ++|.+++|+||+++
T Consensus 757 ~~G~mG~~G~lpaAIGaala~---------------~r~Vv~i~GDGsF~--m~~~EL~Ta~r~~~~lpi~iVV~NN~gg 819 (1655)
T PLN02980 757 NRGASGIDGLLSTAIGFAVGC---------------NKRVLCVVGDISFL--HDTNGLSILSQRIARKPMTILVINNHGG 819 (1655)
T ss_pred cCCccchhhhHHHHHHHhhcC---------------CCCEEEEEehHHHH--hhhhHHHHhhcccCCCCEEEEEEeCCCc
Confidence 4489999 599999999875 46899999999999 999999999985 99999999999998
Q ss_pred cccccc------c-----c----cChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeeccc
Q 006816 177 TIDGPT------S-----L----VLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRE 238 (630)
Q Consensus 177 ~i~~~~------~-----~----~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~ 238 (630)
++.... + . ....|+.+++++||+++.+| . ++++|.++++++.+ .++|++|+|.|-+.
T Consensus 820 gi~~~l~~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~rV---~-~~~eL~~aL~~a~~-~~~p~lIEV~t~~~ 891 (1655)
T PLN02980 820 AIFSLLPIAKRTEPRVLNQYFYTSHDISIENLCLAHGVRHLHV---G-TKSELEDALFTSQV-EQMDCVVEVESSID 891 (1655)
T ss_pred HhhhcCccCCCCcchhHHHHhcCCCCCCHHHHHHHcCCceeec---C-CHHHHHHHHHHhhc-cCCCEEEEEecChh
Confidence 775431 1 0 12468999999999999999 5 99999999999987 78999999997543
No 146
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=99.16 E-value=8.9e-11 Score=122.32 Aligned_cols=122 Identities=20% Similarity=0.262 Sum_probs=106.7
Q ss_pred CcccccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCC
Q 006816 96 EGIEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNH 175 (630)
Q Consensus 96 ~~~~~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~ 175 (630)
=+.++.-.+||+-++.++|+.+|. +++-|++++|||+++ |..-+|.++..++....++++||.+
T Consensus 437 YH~EYgfSCMGYEiaG~lG~K~a~--------------pdreV~vmVGDGSym--MlnSEL~Tsv~~g~Ki~Vvl~DN~G 500 (617)
T COG3962 437 YHLEYGFSCMGYEIAGGLGAKAAE--------------PDREVYVMVGDGSYM--MLNSELATSVMLGKKIIVVLLDNRG 500 (617)
T ss_pred eeeeecccccccccccccccccCC--------------CCCeEEEEEcccchh--hhhHHHHHHHHcCCeEEEEEECCCC
Confidence 356778899999999999999777 889999999999999 9999999999999998888889889
Q ss_pred Cccccccccc-------------------ChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeec
Q 006816 176 NTIDGPTSLV-------------------LSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKM 236 (630)
Q Consensus 176 ~~i~~~~~~~-------------------~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~ 236 (630)
|+...+.+.. ...|+++.+++||.+..+| + ++++|..||+.||+ ..++++|+++|.
T Consensus 501 yGCIn~LQm~~Gg~sf~~~~r~~~~e~~~~~vDfA~~A~s~Ga~~~kv---~-~i~eL~aAL~~Ak~-~~~ttvi~I~t~ 575 (617)
T COG3962 501 YGCINRLQMATGGASFNNLLRDTDHEEEILQVDFAAHAESYGAKAYKV---G-TIEELEAALADAKA-SDRTTVIVIDTD 575 (617)
T ss_pred cchhhhhhhhcCcchhhhhhhhhcccCCCCcccHHHHHhhcCceeEec---C-CHHHHHHHHHHHHh-CCCCEEEEEecC
Confidence 9876554311 2358999999999999999 6 99999999999998 799999999975
Q ss_pred cc
Q 006816 237 RE 238 (630)
Q Consensus 237 k~ 238 (630)
..
T Consensus 576 P~ 577 (617)
T COG3962 576 PK 577 (617)
T ss_pred Cc
Confidence 43
No 147
>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=99.13 E-value=2.2e-08 Score=106.12 Aligned_cols=537 Identities=15% Similarity=0.158 Sum_probs=292.0
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCeEEecCcChhH--HHHHHHHHcCCCCCCHHHHhhhhhcCCCCCCCCCCCCcCccc
Q 006816 22 AEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCL--LQYVCLHLAGFQSVQLEDLKRLCKMGSRTPGHPENVVTEGIE 99 (630)
Q Consensus 22 ~~~~~~L~~~~~~~d~~~~~~~~~Dr~v~s~gH~~~--~~y~~~~l~G~~~~~~~~l~~~r~~~s~~~g~p~~~~~~~~~ 99 (630)
+|-+.+.|+..++-.. ..+-..+|+.-.|..- ++-+. .. ++...+ ||+..+.+ -+|+..+..|+.
T Consensus 191 AESM~aFF~eLl~~sa----~~~ie~viigmpHRGRlnLlt~L---l~---fpP~~m--FRK~~G~s-EFpE~~~A~gDV 257 (913)
T KOG0451|consen 191 AESMLAFFWELLRDSA----QANIEHVIIGMPHRGRLNLLTAL---LN---FPPAKM--FRKLSGAS-EFPEDIEAMGDV 257 (913)
T ss_pred HHHHHHHHHHHHHHHH----hcCcceEEEeccccCcchHHHHH---hc---CCHHHH--HHHhcCcc-cCchhhhHHHHH
Confidence 4445666665554221 1245667888888742 22211 11 444444 77776655 445421111110
Q ss_pred ----------------------ccccccchhHHHHHHHHHHHHHHhhh--hCCCCCccCCceEEE--EEcccccC-chhH
Q 006816 100 ----------------------VTTGPLGQGVANAVGLALAEAHLAAR--FNKPDAVVVDHRTYC--IMSDGCAM-EGIS 152 (630)
Q Consensus 100 ----------------------~~~G~lG~~l~~AvG~A~a~k~~~~~--~~~~~~~~~~~~v~~--~~GDG~~~-eG~~ 152 (630)
....+|-..=|.|+|-+-++...... |.......+..+|+| +-||++|. +|.+
T Consensus 258 lSHl~sS~dykg~~~~lhvtMlpNPSHLEAvNPVAmGKtR~rqqsr~~Gdyspd~sa~~Gd~Vlnv~vHGDaaF~GQGiv 337 (913)
T KOG0451|consen 258 LSHLHSSEDYKGLGKKLHVTMLPNPSHLEAVNPVAMGKTRSRQQSRGEGDYSPDSSAPFGDHVLNVIVHGDAAFAGQGIV 337 (913)
T ss_pred HHHhhhhhhhcccCCceEEEecCChhhhhccCchhhcchhHHHHhhcCCCCCCCCcCCCCCceEEEEEecchhhccCccc
Confidence 01233444458888887776444321 211111123445655 45999995 4999
Q ss_pred HHHHHHhH--HcCCCcEEEEEECCCCcccccccccC-hhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHh---cCC
Q 006816 153 HEAAALAA--HWKLNKLTLIYDDNHNTIDGPTSLVL-SEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAAN---ETK 226 (630)
Q Consensus 153 ~eal~~a~--~~~L~~li~i~~~N~~~i~~~~~~~~-~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~---~~~ 226 (630)
||.++++- +..+.--+-++-||..+..++.+... ..-..+++++++..++.| +|. |++++.+|-+-|.+ .-+
T Consensus 338 ~E~~~ls~~PHFrvGGsvHLivNNQvgfTtp~~rGRSs~ycsDiaK~~~~pviHV-NGD-~PEevvraTrLAf~Yqr~FR 415 (913)
T KOG0451|consen 338 QECLNLSYVPHFRVGGSVHLIVNNQVGFTTPGDRGRSSAYCSDIAKSIQAPVIHV-NGD-DPEEVVRATRLAFRYQREFR 415 (913)
T ss_pred HHHHhhccCCceeecceEEEEecccccccCcccccccchhhhHHHHHhCCCEEEe-CCC-CHHHHHHHHHHHHHHHHHhh
Confidence 99998764 55666567777888888777765432 223456788999999999 999 99999988665422 145
Q ss_pred CcEEEEEeecccccCcccC-CCCCCChHHHH----------HHHHhh-hhchhHHHHHHHHHHhhhh----------cCC
Q 006816 227 KPTFIRVKKMRERVNWVDR-DQFHVIPMVYR----------EMQIQT-DHGERLEKEWCSKVYNYRS----------KYP 284 (630)
Q Consensus 227 ~P~~i~~~t~k~~~g~~~~-~~~~~~~~~~~----------~~~~~~-~~~~~~~~~~~~~~~~~~~----------~~~ 284 (630)
+-++|...++|.+ |+..- ++++..+-.++ .|.+++ ++|..++++-++..+++.+ .+.
T Consensus 416 KDvfIdL~CfRrw-gHnelddp~ftspvmyk~v~aReSvPdlya~~L~~eg~~tee~vkE~~~~y~~~Ln~eL~~~~~y~ 494 (913)
T KOG0451|consen 416 KDVFIDLNCFRRW-GHNELDDPTFTSPVMYKEVEARESVPDLYAQQLAKEGVLTEEKVKEMRDEYMKYLNEELALAPAYQ 494 (913)
T ss_pred hhheeehHHHHHh-ccccccCccccChhHHHHHHhhhcccHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCccC
Confidence 7799999999999 98643 34443332222 333322 4555555544433222210 000
Q ss_pred chhHhHHHHhcCC-C-CC---CccccC---------------C-CCC-----------------CCCCCchHHHHHHHHH
Q 006816 285 HEGAELDLLLNGG-L-LP---GWENAL---------------P-KWS-----------------TSDPLDATRGYSEKCL 326 (630)
Q Consensus 285 ~~~~~~~~~~~~~-~-p~---~~~~~~---------------~-~~~-----------------~~~~~~~~r~a~~~~L 326 (630)
-....+...+.|- . |. .|...+ | ++. ..+.++....+=.-++
T Consensus 495 Pp~~~~~~~W~gf~qapk~it~WdTGv~~dLLrfiG~~SV~vPedf~~H~HLlKtHv~sRm~Km~~G~kiDWaTAEAlA~ 574 (913)
T KOG0451|consen 495 PPPSYFEKQWTGFQQAPKEITYWDTGVDYDLLRFIGQQSVTVPEDFNIHPHLLKTHVNSRMKKMENGVKIDWATAEALAI 574 (913)
T ss_pred CCchhhHHhhhhhccChhhhcccccCcchHHHHHhccCceecchhccccHHHHHHHHHHHHHHHhcCCccchHHHHHHHH
Confidence 0000111111110 0 10 121111 1 010 0011222222333455
Q ss_pred HHHHHhCCCeEEEecCCCCCccccc------ccccCcCCCCC--CCC-----CccccccchHHHHHHHHHHHhcCCCCce
Q 006816 327 NQLAKVLPGLIGGSADLASSNKAYL------LGYHDFSQPDS--PWG-----RNIRYGVREHAMAGISNGVALHGGGLIP 393 (630)
Q Consensus 327 ~~l~~~~~~iv~~~aD~~~s~~~~~------~~~~~f~~~~~--~p~-----R~~~~gIaE~~~vg~a~GlA~~G~~~~p 393 (630)
-.++-..-++.+-+.|++.+++..- +.++...-+-+ -++ -+-|..++|.+..|+--||+.+.+...+
T Consensus 575 GSll~qG~nVRiSGqDVGRGTFshRHAM~VdQ~Td~~~IPLN~m~~~qkg~LEvans~LSEEAvLGFEyGmsienP~~L~ 654 (913)
T KOG0451|consen 575 GSLLYQGHNVRISGQDVGRGTFSHRHAMLVDQQTDEMFIPLNSMEGGQKGKLEVANSILSEEAVLGFEYGMSIENPNNLI 654 (913)
T ss_pred HHHHhccCceeeeccccCcccccccceeeeeccccceeeeccccCCCcCCeeEeccccccHhhhhhhhcccccCCcccce
Confidence 5777778889999999988765421 11111100000 011 2558899999999999999999866778
Q ss_pred Eee-ehHHHHH---hhHHHHHHh---ccc-CCCeEEEEecCCCCCCCCCCCCCChhhhHHhhc-----------CCCcEE
Q 006816 394 FAA-TFLIFSD---YMKNSIRLS---ALS-HAGVIYILTHDSIGLGEDGPTHQPVEQLAGLRA-----------VPRLLA 454 (630)
Q Consensus 394 v~~-~~~~F~~---~a~dqi~~~---a~~-~~pv~~v~~~~g~~~g~~G~tHq~~~d~a~l~~-----------iP~l~v 454 (630)
+.+ .|.+|.. -.+|..... -++ ..-+++.. +.|+. | -||-|.+---.-+|.- --||.|
T Consensus 655 iWEAQFGDFfNGAQIIiDTFi~sgE~KWl~ssglvmLL-PHGyD-G-AgpeHSSCRiERFLQlCDS~E~~vDGd~VNm~v 731 (913)
T KOG0451|consen 655 IWEAQFGDFFNGAQIIIDTFIVSGETKWLESSGLVMLL-PHGYD-G-AGPEHSSCRIERFLQLCDSKETSVDGDSVNMHV 731 (913)
T ss_pred eehhhhcccccCceEEEeeeecccchhhhhhCCeEEEc-cCCcC-C-CCCccchhhHHHHHHHhccccccCCCcceeEEE
Confidence 886 5888874 233332221 122 33344443 45442 2 3677865443344432 246999
Q ss_pred EecCChHHHHHHHHH-HHHcCCCcEEEEEcCCCcc-cccCCCccccccccc-EE------EecCCCCCCCcEEEEEeCch
Q 006816 455 FRPADGNETAGSYRV-AIANRDVPSVIALSRQKIA-ANLEGTSADEVERGG-YI------VSDNSSENKPEIILIGTGTE 525 (630)
Q Consensus 455 ~~P~d~~e~~~~l~~-a~~~~~~P~~ir~~r~~~~-~~~~~~~~~~~~~G~-~~------~~~~~~~G~~dvtiva~G~~ 525 (630)
+-|.++.+...+|+. .+++-..|.++.-||-.+. |....+ -..+..|. |. +.+ . .+-+-+|++.|--
T Consensus 732 vnPTTpAQYfHlLRRQ~vrNfRKPLiVv~PK~LLRlPaA~ST-~~ef~PGTtf~nVigd~~~~--p-~kvkkvifcSGKH 807 (913)
T KOG0451|consen 732 VNPTTPAQYFHLLRRQLVRNFRKPLIVVAPKTLLRLPAATST-HEEFQPGTTFHNVIGDTIAK--P-EKVKKVIFCSGKH 807 (913)
T ss_pred eCCCCHHHHHHHHHHHHHHhccCceEEechHHHhhCcchhhh-HhhcCCCccccccccccccC--h-hHheEEEEecCcc
Confidence 999999999999975 5565578988876654320 111000 11122221 11 111 1 1134567788987
Q ss_pred HHHHHHHHHHHHhcCCceEEEEcccccccCcccHHHHhccCCC-C-CeeEEEEecCCccc-c
Q 006816 526 LSLCEGTAKTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLPS-R-VVKRVSVEAGSSVG-W 584 (630)
Q Consensus 526 v~~a~~aa~~L~~~gi~~~Vi~~~~i~pld~~~~~~~~~v~~~-~-~~~~v~vEe~~~~g-~ 584 (630)
.....+..+.+..+. .+.|+-+-++-||..+.+.. .+.+- + ...+..-||....| |
T Consensus 808 ~y~l~k~Re~rgakd-~~AI~RvE~LCPFPi~~LQa--~l~kY~~vqdfvWSQEEprNmGaW 866 (913)
T KOG0451|consen 808 YYTLAKEREKRGAKD-TVAILRVESLCPFPIQELQA--QLAKYGNVQDFVWSQEEPRNMGAW 866 (913)
T ss_pred hhhHHHHHHhccccc-ceeeEehhhcCCCchHHHHH--HHHhcCChhhhcccccccccCCcc
Confidence 766666666553332 37889999999999876652 22221 1 12347788887776 5
No 148
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=99.12 E-value=3.9e-10 Score=118.41 Aligned_cols=119 Identities=24% Similarity=0.286 Sum_probs=98.2
Q ss_pred cccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCC-c
Q 006816 99 EVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHN-T 177 (630)
Q Consensus 99 ~~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~-~ 177 (630)
..+.|.||-|++.|+++|++. |++.|||+-||++|. .+..++.|++++|||.+++|+|||++ +
T Consensus 426 aGtfgTMGVG~Gfalaaa~~~--------------P~~~V~~veGDsaFG--fSaME~ET~vR~~Lpvv~vV~NN~Giyg 489 (571)
T KOG1185|consen 426 AGTFGTMGVGLGFALAAALAA--------------PDRKVVCVEGDSAFG--FSAMELETFVRYKLPVVIVVGNNNGIYG 489 (571)
T ss_pred CccccccccchhHHHHHHhhC--------------CCCeEEEEecCcccC--cchhhHHHHHHhcCCeEEEEecCCcccc
Confidence 346799999999999999998 999999999999996 99999999999999999999988875 2
Q ss_pred cccccc----------------ccChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeecc
Q 006816 178 IDGPTS----------------LVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMR 237 (630)
Q Consensus 178 i~~~~~----------------~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k 237 (630)
.+.... ...+.++.+..++||-+.+.| + ++++|..+++++.+.+++|++|.+..-+
T Consensus 490 ~d~~~~~~I~e~~~~~~~p~~~l~~~~rY~~v~ka~G~kG~~v---~-t~~el~~~l~~a~q~~~~psvINVlI~p 561 (571)
T KOG1185|consen 490 LDDDGWKQISEQDPTLDLPPTALLANTRYDKVAKAFGGKGYFV---S-TVEELLAALQQACQDTDKPSVINVLIGP 561 (571)
T ss_pred cCcccHHHHhhcCcccCCCcccccccccHHHHHHHcCCCceee---C-CHHHHHHHHHHHHhcCCCCeEEEEEecc
Confidence 221110 012457899999999999999 5 8999999999987646799999886543
No 149
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.11 E-value=9.7e-10 Score=112.66 Aligned_cols=130 Identities=15% Similarity=0.053 Sum_probs=102.5
Q ss_pred cccccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCC
Q 006816 97 GIEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHN 176 (630)
Q Consensus 97 ~~~~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~ 176 (630)
.+.+....+|.+++.|.|+++|.+.++ + ++..|++++|||++.++-. |+|+.|+.+++| +++|+.||.+
T Consensus 63 ~~~~i~~~~G~~~~~A~G~a~A~~~~~----~-----~~~~Vva~~GDG~~~~~g~-~~l~~A~~~~~~-v~~vv~dN~~ 131 (300)
T PRK11864 63 TVPVLHTAFAATAAVASGIEEALKARG----E-----KGVIVVGWAGDGGTADIGF-QALSGAAERNHD-ILYIMYDNEA 131 (300)
T ss_pred cccceeehhhChHHHHHHHHHHHHhhC----C-----CCcEEEEEEccCccccccH-HHHHHHHHhCcC-EEEEEECCee
Confidence 455567899999999999999987654 1 2456777999999988764 999999999998 7777778876
Q ss_pred ccccccccc------------------ChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeeccc
Q 006816 177 TIDGPTSLV------------------LSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRE 238 (630)
Q Consensus 177 ~i~~~~~~~------------------~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~ 238 (630)
.+.+-.|.. ..-|+..++.++|..++..++-- |+.++.+++++|.+ .++|.+|++.+.--
T Consensus 132 ~~~TGgQ~S~~Tp~ga~t~tsp~G~~~~kkdi~~i~~a~g~~yVA~~~~~-~~~~~~~~i~~A~~-~~Gps~I~~~spC~ 209 (300)
T PRK11864 132 YMNTGIQRSSSTPYGAWTTTTPGGKREHKKPVPDIMAAHKVPYVATASIA-YPEDFIRKLKKAKE-IRGFKFIHLLAPCP 209 (300)
T ss_pred eecCCCCCCCCCcCCCccccCCCCCcCCCCCHHHHHHHcCCCEEEEEeCC-CHHHHHHHHHHHHh-CCCCEEEEEeCCCC
Confidence 544332211 12578999999999887655877 99999999999998 79999999986554
Q ss_pred c
Q 006816 239 R 239 (630)
Q Consensus 239 ~ 239 (630)
.
T Consensus 210 ~ 210 (300)
T PRK11864 210 P 210 (300)
T ss_pred C
Confidence 3
No 150
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=99.08 E-value=4e-10 Score=119.39 Aligned_cols=119 Identities=20% Similarity=0.298 Sum_probs=98.1
Q ss_pred cccccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCC
Q 006816 97 GIEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHN 176 (630)
Q Consensus 97 ~~~~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~ 176 (630)
......|++|+++++++|+++|. ++++|+.++|||++| +..+++.++.+++|+.++|++||++|
T Consensus 409 ~~q~~wgsIG~svga~lG~a~a~--------------~e~rvilfiGDGs~q--lTvQeiStmir~gl~~~if~~NN~GY 472 (561)
T KOG1184|consen 409 ESQMQWGSIGWSVGATLGYAQAA--------------PEKRVILFIGDGSFQ--LTVQEISTMIRWGLKPIIFLINNGGY 472 (561)
T ss_pred EEEEEEeeccccchhhhhhhhcc--------------CCceEEEEecCccce--eeHHHHHHHHhcCCCcEEEEEeCCce
Confidence 45667799999999999999998 889999999999999 89999999999999999999999999
Q ss_pred cccccccc-----cChhcHHHHHHhCCC-----eEEEEeCCCCCHHHHHHHHHHHH-hcCCCcEEEEEee
Q 006816 177 TIDGPTSL-----VLSEDISARFKSLGW-----NTIMVENIHDNLSSFKEALMAAA-NETKKPTFIRVKK 235 (630)
Q Consensus 177 ~i~~~~~~-----~~~~~~~~~~~a~G~-----~~~~v~dG~~d~~~l~~al~~a~-~~~~~P~~i~~~t 235 (630)
.|+..... ..+.|+.+++++||- +...+ . ...++.++++.+. +..++|++|||+.
T Consensus 473 TIE~~IH~~~Yn~I~~Wd~~~l~~afg~~~gk~~~~~v---~-~~~e~~~~~~~~~~~~~~~i~liEv~l 538 (561)
T KOG1184|consen 473 TIEVEIHDGPYNDIQNWDYTALLEAFGAGEGKYETHKV---R-TEEELVEAIKDATFEKNDKIRLIEVIL 538 (561)
T ss_pred EEEEeecCCCccccccchHHHHHHhhcCccceeEEeee---c-cchHHHHHHhhhhhcccCceEEEEEec
Confidence 99876542 235788899999974 33444 3 5567777777664 3357899999965
No 151
>PF03894 XFP: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; InterPro: IPR005593 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=99.07 E-value=1.6e-09 Score=100.52 Aligned_cols=152 Identities=20% Similarity=0.230 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHhCC-CeEEEecCCCCCcccc--cccccC-cC---CC-----CCCCCCccccccchHHHHHHHHHHHhc
Q 006816 320 GYSEKCLNQLAKVLP-GLIGGSADLASSNKAY--LLGYHD-FS---QP-----DSPWGRNIRYGVREHAMAGISNGVALH 387 (630)
Q Consensus 320 ~a~~~~L~~l~~~~~-~iv~~~aD~~~s~~~~--~~~~~~-f~---~~-----~~~p~R~~~~gIaE~~~vg~a~GlA~~ 387 (630)
.++++.|.++++.|| ++.++++|...|+... +..++. |. .. ..-+++-+..-++|+.+.|+..|+.+.
T Consensus 2 ~~lg~~l~dv~~~N~~nfRvf~PDEt~SNrL~~v~e~t~r~w~~~~~~~~~~~~~~~~G~V~e~LSEh~c~G~leGY~Lt 81 (179)
T PF03894_consen 2 RVLGKYLRDVIKLNPRNFRVFGPDETASNRLNAVFEVTNRQWMARILPPDDDEHLAPGGRVMEVLSEHQCQGWLEGYLLT 81 (179)
T ss_dssp HHHHHHHHHHHHHSTTTEEEEESS-TTTTT-GGGGGT--EE--S----TTT-TTEESS-SEEE-S-HHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHhCCCcceeECCCcchhhchHHHHHhcccccccccCCCcchhhcccCCeeeeecCHHHHHHHHHHHHhc
Confidence 368999999999887 6999999998887653 322211 10 00 011355666779999999999999999
Q ss_pred CCCCceEeeehHHHHH---hhHHH----HHHh---cc-cCCC-eEEEEecCCCCCCCCCCCCCChhhhHHh-hcCCC-cE
Q 006816 388 GGGLIPFAATFLIFSD---YMKNS----IRLS---AL-SHAG-VIYILTHDSIGLGEDGPTHQPVEQLAGL-RAVPR-LL 453 (630)
Q Consensus 388 G~~~~pv~~~~~~F~~---~a~dq----i~~~---a~-~~~p-v~~v~~~~g~~~g~~G~tHq~~~d~a~l-~~iP~-l~ 453 (630)
| -+-++.+|..|+. .++.| ++.+ .. ...| +.++.|......+.+|.|||...-+..+ .-.|+ ++
T Consensus 82 G--rhglf~sYEAF~~ivdsM~~Qh~Kwl~~~~~~~wR~~~~SlN~l~TS~~wrQdhNG~SHQdPgfi~~~~~k~~~~~R 159 (179)
T PF03894_consen 82 G--RHGLFASYEAFAHIVDSMLNQHAKWLRHARELPWRAPIPSLNYLLTSHVWRQDHNGFSHQDPGFIDHVLNKKPDVVR 159 (179)
T ss_dssp T---EEEEEEEGGGGGGGHHHHHHHHHHHHHHHH-TTS---B-EEEEEES-CCG-TTT-GGG---THHHHHHCC--T-EE
T ss_pred C--CcccccccchhHHHHHHHHHHHHHHHHHHHhCcCCCCCcceeEEeeccceecCCCCcccCCChHHHHHHhcCcccce
Confidence 9 9999999999984 57787 2322 11 1222 4444455666678999999943322222 22333 89
Q ss_pred EEecCChHHHHHHHHHHHHc
Q 006816 454 AFRPADGNETAGSYRVAIAN 473 (630)
Q Consensus 454 v~~P~d~~e~~~~l~~a~~~ 473 (630)
||.|+|++-+.+++..|+++
T Consensus 160 vylPpDANtlLav~~~clrs 179 (179)
T PF03894_consen 160 VYLPPDANTLLAVMDHCLRS 179 (179)
T ss_dssp EEE-SSHHHHHHHHHHHHH-
T ss_pred eecCCcHhHHHHHHHHHhcC
Confidence 99999999999999999873
No 152
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=99.07 E-value=1.2e-10 Score=119.85 Aligned_cols=117 Identities=17% Similarity=0.217 Sum_probs=104.6
Q ss_pred ccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCccccc
Q 006816 102 TGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGP 181 (630)
Q Consensus 102 ~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~ 181 (630)
-|.||+|+|+|+|+..|+ |+..|+-+-||++|. |..++|.++.+.++|..|+|+||..+++.++
T Consensus 523 LGtMGfGLPAAIGAsVA~--------------P~~iViDIDGDaSF~--Mt~~ELat~rq~~~PVKiLiLNNeeqGMVtQ 586 (675)
T KOG4166|consen 523 LGTMGFGLPAAIGASVAN--------------PDAIVIDIDGDASFI--MTVQELATIRQENLPVKILILNNEEQGMVTQ 586 (675)
T ss_pred ccccccCcchhhcccccC--------------cccEEEeccCCceee--eehHhhhhhhhcCCceEEEEecchhhhhHHH
Confidence 478999999999999998 999999999999999 9999999999999999999999999888777
Q ss_pred cccc-----------ChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeecccc
Q 006816 182 TSLV-----------LSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRER 239 (630)
Q Consensus 182 ~~~~-----------~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~~ 239 (630)
.+.. .++++.++++++|++..+| . .-++|.+.+++... .++|+++++.+.+.-
T Consensus 587 Wq~lFYe~rysHThQ~nPnf~klA~AmGikalRV---~-K~edL~~k~kefls-TkGPvLleV~v~~ke 650 (675)
T KOG4166|consen 587 WQDLFYEARYSHTHQENPNFLKLAAAMGIKALRV---T-KKEDLREKIKEFLS-TKGPVLLEVIVPHKE 650 (675)
T ss_pred HHHHHHHhhhccccccCccHHHHHHhcCCchhee---e-hHHHHHHHHHHHhC-CCCCeEEEEEccCcc
Confidence 6533 2578999999999999999 4 78899999999997 899999999875543
No 153
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=99.07 E-value=5.3e-09 Score=113.25 Aligned_cols=201 Identities=17% Similarity=0.148 Sum_probs=144.3
Q ss_pred chHHHHHHHHHHHhcCCCCceEeeehHHHHHhhHHHHHHhcccCCCeEEEEecCCCCCCCCCCCCCChhhhHHhhcCCCc
Q 006816 373 REHAMAGISNGVALHGGGLIPFAATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAVPRL 452 (630)
Q Consensus 373 aE~~~vg~a~GlA~~G~~~~pv~~~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~~g~~G~tHq~~~d~a~l~~iP~l 452 (630)
+|...++++.|-|..| .|.+..|=+.=+.++.|.|..++...+|++++. ..|.+.+ .-++|....|+-..| --++
T Consensus 64 ~E~~A~~~~~GAs~aG--aRa~TaTS~~Gl~lm~E~l~~aa~~~~P~V~~~-~~R~~~~-~~~i~~d~~D~~~~r-~~g~ 138 (407)
T PRK09622 64 SEHAAMSACVGAAAAG--GRVATATSSQGLALMVEVLYQASGMRLPIVLNL-VNRALAA-PLNVNGDHSDMYLSR-DSGW 138 (407)
T ss_pred cHHHHHHHHHHHHhhC--cCEEeecCcchHHHHhhHHHHHHHhhCCEEEEE-eccccCC-CcCCCchHHHHHHHh-cCCe
Confidence 9999999999999999 999888766656789999999999999988775 3443322 257787777876665 5679
Q ss_pred EEEecCChHHHHHHHHHHHHc--C---CCcEEEEEc-------CCCcccccCC----------Cccc-------ccccc-
Q 006816 453 LAFRPADGNETAGSYRVAIAN--R---DVPSVIALS-------RQKIAANLEG----------TSAD-------EVERG- 502 (630)
Q Consensus 453 ~v~~P~d~~e~~~~l~~a~~~--~---~~P~~ir~~-------r~~~~~~~~~----------~~~~-------~~~~G- 502 (630)
.+++|+|.+|+..+...|.+- + .-|++++.. ++.+ ..... .... +...|
T Consensus 139 ivl~p~s~QEa~d~~~~Af~lAE~~~~~~Pviv~~Dg~~~sh~~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 217 (407)
T PRK09622 139 ISLCTCNPQEAYDFTLMAFKIAEDQKVRLPVIVNQDGFLCSHTAQNV-RPLSDEVAYQFVGEYQTKNSMLDFDKPVTYGA 217 (407)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHHhccCCCEEEEechhhhhCceeee-cCCCHHHHhhccCcccccccccCCCCCccCCC
Confidence 999999999999999888654 1 579998753 1111 00000 0000 00000
Q ss_pred --------------------------------------cEEEec-CCCCCCCcEEEEEeCchHHHHHHHHHHHHhcCCce
Q 006816 503 --------------------------------------GYIVSD-NSSENKPEIILIGTGTELSLCEGTAKTLRQEGRRV 543 (630)
Q Consensus 503 --------------------------------------~~~~~~-~~~~G~~dvtiva~G~~v~~a~~aa~~L~~~gi~~ 543 (630)
.|...+ ...++ .|++||++|+++..+.+|++.|+++|+++
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~k~~g~~y~~~e~~~~ed-ad~~iV~~Gs~~~~a~ea~~~L~~~G~kv 296 (407)
T PRK09622 218 QTEEDWHFEHKAQLHHALMSSSSVIEEVFNDFAKLTGRKYNLVETYQLED-AEVAIVALGTTYESAIVAAKEMRKEGIKA 296 (407)
T ss_pred CCCCCeeEEechhcchhhhhhHHHHHHHHHHHHHHhCCCCCceeecCCCC-CCEEEEEEChhHHHHHHHHHHHHhCCCCe
Confidence 000000 00123 78999999999999999999999999999
Q ss_pred EEEEcccccccCcccHHHHhccCCCCCeeEEEEecCCcccc
Q 006816 544 RVVSLVCWRLFDRQPAEYKEKVLPSRVVKRVSVEAGSSVGW 584 (630)
Q Consensus 544 ~Vi~~~~i~pld~~~~~~~~~v~~~~~~~~v~vEe~~~~g~ 584 (630)
.||++++++|||.+.+. .+++...++ +|+|++...|+
T Consensus 297 gvi~~r~~~Pfp~~~l~---~~l~~~k~V-vVvE~~~~~Gg 333 (407)
T PRK09622 297 GVATIRVLRPFPYERLG---QALKNLKAL-AILDRSSPAGA 333 (407)
T ss_pred EEEEeeEhhhCCHHHHH---HHHhcCCEE-EEEeCCCCCCC
Confidence 99999999999998765 344444455 99999987664
No 154
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=98.95 E-value=3.1e-08 Score=105.80 Aligned_cols=197 Identities=14% Similarity=0.098 Sum_probs=141.4
Q ss_pred chHHHHHHHHHHHhcCCCCceEeeehHHHHHhhHHHHHHhcccCCCeEEEEecCCCCCCCCCCCCCChhhhHHhh-----
Q 006816 373 REHAMAGISNGVALHGGGLIPFAATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQLAGLR----- 447 (630)
Q Consensus 373 aE~~~vg~a~GlA~~G~~~~pv~~~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~~g~~G~tHq~~~d~a~l~----- 447 (630)
.|.+.+++|.|.|..| .|.+..|=+.=+.++.++|-.++...+|++++. ..+.|.+..-||.....|+...+
T Consensus 55 ~E~aA~~~a~GAs~aG--~Ra~taTSg~G~~lm~E~~~~a~~~e~P~V~~~-~~R~GpstG~p~~~~q~D~~~~~~~~hg 131 (375)
T PRK09627 55 DEISGISVALGASMSG--VKSMTASSGPGISLKAEQIGLGFIAEIPLVIVN-VMRGGPSTGLPTRVAQGDVNQAKNPTHG 131 (375)
T ss_pred CHHHHHHHHHHHHhhC--CCEEeecCCchHHHHhhHHHHHHhccCCEEEEE-eccCCCcCCCCCccchHHHHHHhcCCCC
Confidence 8999999999999999 999988766656688899998899999988864 45544443347877778887766
Q ss_pred cCCCcEEEecCChHHHHHHHHHHHHc---CCCcEEEEEc------CCCcc-cc---cC---------C-C-c-cccccc-
Q 006816 448 AVPRLLAFRPADGNETAGSYRVAIAN---RDVPSVIALS------RQKIA-AN---LE---------G-T-S-ADEVER- 501 (630)
Q Consensus 448 ~iP~l~v~~P~d~~e~~~~l~~a~~~---~~~P~~ir~~------r~~~~-~~---~~---------~-~-~-~~~~~~- 501 (630)
..|.+ |++|+|.+|+..+...|++- ..-|++++.. ++.+. +. ++ . . . ......
T Consensus 132 d~~~i-vl~p~~~qEa~d~t~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (375)
T PRK09627 132 DFKSI-ALAPGSLEEAYTETVRAFNLAERFMTPVFLLLDETVGHMYGKAVIPDLEEVQKMIINRKEFDGDKKDYKPYGVA 210 (375)
T ss_pred CcCcE-EEeCCCHHHHHHHHHHHHHHHHHHcCceEEecchHHhCCeeeccCCChHhccccccccccccCCcccccCCccC
Confidence 55666 99999999999988887643 2569998753 11110 00 00 0 0 0 000000
Q ss_pred -------------cc-----------------------------------------EEEecCCCCCCCcEEEEEeCchHH
Q 006816 502 -------------GG-----------------------------------------YIVSDNSSENKPEIILIGTGTELS 527 (630)
Q Consensus 502 -------------G~-----------------------------------------~~~~~~~~~G~~dvtiva~G~~v~ 527 (630)
+. +.... . ++.|++||+||+...
T Consensus 211 ~~~P~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~y~--~-~dAd~~IV~~GSt~~ 287 (375)
T PRK09627 211 QDEPAVLNPFFKGYRYHVTGLHHGPIGFPTEDAKICGKLIDRLFNKIESHQDEIEEYEEYM--L-DDAEILIIAYGSVSL 287 (375)
T ss_pred CCCCcccCCCCCCceEEecCccccccCCcCCCHHHHHHHHHHHHHHHHHHhhhcCCceeeC--C-CCCCEEEEEeCCCHH
Confidence 00 00111 1 126899999999999
Q ss_pred HHHHHHHHHHhcCCceEEEEcccccccCcccHHHHhccCCCCCeeEEEEecCC
Q 006816 528 LCEGTAKTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLPSRVVKRVSVEAGS 580 (630)
Q Consensus 528 ~a~~aa~~L~~~gi~~~Vi~~~~i~pld~~~~~~~~~v~~~~~~~~v~vEe~~ 580 (630)
.+.+|.+.|+++|+++.++.++++.||+.+.+. .+++...++ +|+|.+.
T Consensus 288 ~~keAv~~lr~~G~kvg~l~~~~~~PfP~~~i~---~~l~~~k~v-iVvE~n~ 336 (375)
T PRK09627 288 SAKEAIKRLREEGIKVGLFRPITLWPSPAKKLK---EIGDKFEKI-LVIELNM 336 (375)
T ss_pred HHHHHHHHHHhcCCeEEEEEeCeEECCCHHHHH---HHHhcCCEE-EEEcCCh
Confidence 999999999999999999999999999988654 344444345 9999986
No 155
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=98.85 E-value=1.8e-07 Score=100.34 Aligned_cols=202 Identities=15% Similarity=0.194 Sum_probs=144.8
Q ss_pred cchHHHHHHHHHHHhcCCCCceEeeehHHHHHhhHHHHHHhcccCCCeEEEEecCCCCCCCCCCCCCChhhhHHhhcCCC
Q 006816 372 VREHAMAGISNGVALHGGGLIPFAATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAVPR 451 (630)
Q Consensus 372 IaE~~~vg~a~GlA~~G~~~~pv~~~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~~g~~G~tHq~~~d~a~l~~iP~ 451 (630)
=+|.+++++|.|-|+.| .|.++.|=+.=+.++.|+|..++...+|++++. ..+.+.+ .++||....|+-..+.- +
T Consensus 56 E~E~aA~~~aiGAs~aG--aRa~TaTSg~Gl~lm~E~l~~aa~~~lPiVi~~-~~R~~p~-~~~~~~~q~D~~~~~d~-g 130 (390)
T PRK08366 56 ESEHSAMAACIGASAAG--ARAFTATSAQGLALMHEMLHWAAGARLPIVMVD-VNRAMAP-PWSVWDDQTDSLAQRDT-G 130 (390)
T ss_pred CCHHHHHHHHHHHHhhC--CCeEeeeCcccHHHHhhHHHHHHhcCCCEEEEE-eccCCCC-CCCCcchhhHHHHHhhc-C
Confidence 37999999999999999 999998866666789999999999999988874 3555443 47888778887666544 8
Q ss_pred cEEEecCChHHHHHHHHHHHHc---CCCcEEEEEcC-------CCcc-cc-------cCC--------Ccccccc-----
Q 006816 452 LLAFRPADGNETAGSYRVAIAN---RDVPSVIALSR-------QKIA-AN-------LEG--------TSADEVE----- 500 (630)
Q Consensus 452 l~v~~P~d~~e~~~~l~~a~~~---~~~P~~ir~~r-------~~~~-~~-------~~~--------~~~~~~~----- 500 (630)
+.+++|+|.+|+..+...|++- ..-|++++... ..+. +. +++ .....+.
T Consensus 131 ~i~~~~~~~QEa~d~t~~Af~lAE~~~~PViv~~Dg~~~sh~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~p~s~~~~~ 210 (390)
T PRK08366 131 WMQFYAENNQEVYDGVLMAFKVAETVNLPAMVVESAFILSHTYDVVEMIPQELVDEFLPPRKPLYSLADFDNPISVGALA 210 (390)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEecCcccccccccccCCCHHHHhhhcCccccccccCCCCCCcccccCC
Confidence 8999999999999988877643 35799887621 1100 00 000 0000000
Q ss_pred ---------------------------------cc-cEE-Eec-CCCCCCCcEEEEEeCchHHHHHHHHHHHHhcCCceE
Q 006816 501 ---------------------------------RG-GYI-VSD-NSSENKPEIILIGTGTELSLCEGTAKTLRQEGRRVR 544 (630)
Q Consensus 501 ---------------------------------~G-~~~-~~~-~~~~G~~dvtiva~G~~v~~a~~aa~~L~~~gi~~~ 544 (630)
.| .|. ..+ ... ++.|++||++|+....+.+|.+.|+++|+++.
T Consensus 211 ~~~~~~e~~~~~~~~~e~~~~~i~~~~~~~~k~~gr~~~~~~e~y~~-edAe~~iV~~Gs~~~~~~eav~~lr~~G~kvg 289 (390)
T PRK08366 211 TPADYYEFRYKIAKAMEEAKKVIKEVGKEFGERFGRDYSQMIETYYT-DDADFVFMGMGSLMGTVKEAVDLLRKEGYKVG 289 (390)
T ss_pred CCcceeeeeHhhhHHHHhHHHHHHHHHHHHHHHhCccccccceecCC-CCCCEEEEEeCccHHHHHHHHHHHHhcCCcee
Confidence 00 010 000 001 12689999999999999999999999999999
Q ss_pred EEEcccccccCcccHHHHhccCCCCCeeEEEEecCCccc
Q 006816 545 VVSLVCWRLFDRQPAEYKEKVLPSRVVKRVSVEAGSSVG 583 (630)
Q Consensus 545 Vi~~~~i~pld~~~~~~~~~v~~~~~~~~v~vEe~~~~g 583 (630)
++-++++.||+.+.+. .+++..+++ +++|.+...|
T Consensus 290 ~l~i~~~~PfP~~~i~---~~l~~~k~V-iVvE~n~~~G 324 (390)
T PRK08366 290 YAKVRWFRPFPKEELY---EIAESVKGI-AVLDRNFSFG 324 (390)
T ss_pred eEEEeeecCCCHHHHH---HHHhcCCEE-EEEeCCCCCC
Confidence 9999999999998664 355544445 9999987644
No 156
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=98.83 E-value=5.2e-07 Score=97.06 Aligned_cols=203 Identities=17% Similarity=0.228 Sum_probs=142.6
Q ss_pred cchHHHHHHHHHHHhcCCCCceEeeehHHHHHhhHHHHHHhcccCCCeEEEEecCCCCCCCCCCCCCChhhhHHhhcCCC
Q 006816 372 VREHAMAGISNGVALHGGGLIPFAATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAVPR 451 (630)
Q Consensus 372 IaE~~~vg~a~GlA~~G~~~~pv~~~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~~g~~G~tHq~~~d~a~l~~iP~ 451 (630)
=+|.++++++.|-|..| .|.+..|=+.=+.++.|+|..++.+.+|++++. ..+ +++.-..+|....|....|.. +
T Consensus 57 EsE~aA~~~~~GAs~aG--aRa~TaTS~~Gl~lm~E~l~~aag~~lP~V~vv-~~R-~~~~p~~i~~d~~D~~~~rd~-g 131 (394)
T PRK08367 57 ESEHSAISACVGASAAG--VRTFTATASQGLALMHEVLFIAAGMRLPIVMAI-GNR-ALSAPINIWNDWQDTISQRDT-G 131 (394)
T ss_pred CCHHHHHHHHHHHHhhC--CCeEeeeccchHHHHhhHHHHHHHccCCEEEEE-CCC-CCCCCCCcCcchHHHHhcccc-C
Confidence 47999999999999999 999988866666789999999999999999985 233 333333567666776555554 4
Q ss_pred cEEEecCChHHHHHHHHHHHHcCC-----CcEEEEEcC-------CCc--c---------ccc-C---C-Ccccccc---
Q 006816 452 LLAFRPADGNETAGSYRVAIANRD-----VPSVIALSR-------QKI--A---------ANL-E---G-TSADEVE--- 500 (630)
Q Consensus 452 l~v~~P~d~~e~~~~l~~a~~~~~-----~P~~ir~~r-------~~~--~---------~~~-~---~-~~~~~~~--- 500 (630)
+.+++|+|.+|+..+...|.+-.. -|++++... +++ + +.. + . +....+.
T Consensus 132 ~~~~~a~~~QEa~D~~~~Af~lAE~~~~~~Pviv~~Dgf~~sH~~e~v~~~~~~~~~~~~~~~~~~~~~~d~~~p~~~g~ 211 (394)
T PRK08367 132 WMQFYAENNQEALDLILIAFKVAEDERVLLPAMVGFDAFILTHTVEPVEIPDQEVVDEFLGEYEPKHAYLDPARPITQGA 211 (394)
T ss_pred eEEEeCCCHHHHHHHHHHHHHHHHHhCcCCCEEEEechhhhcCcccccccCCHHHHhhhcCcccccccccCCCCCcccCC
Confidence 778899999999998887764322 599886532 111 0 000 0 0 0000000
Q ss_pred -----------------------------------cc-cEEEec-CCCCCCCcEEEEEeCchHHHHHHHHHHHHhcCCce
Q 006816 501 -----------------------------------RG-GYIVSD-NSSENKPEIILIGTGTELSLCEGTAKTLRQEGRRV 543 (630)
Q Consensus 501 -----------------------------------~G-~~~~~~-~~~~G~~dvtiva~G~~v~~a~~aa~~L~~~gi~~ 543 (630)
.| +|...+ ...+ +.|+.||++|+....+.+|.+.|+++|+++
T Consensus 212 ~~~p~~~~~~~~~~~~~~~~~~~~i~e~~~e~~~~~grky~~~e~yg~e-DAe~viV~~GS~~~~~keav~~LR~~G~kV 290 (394)
T PRK08367 212 LAFPAHYMEARYTVWEAMENAKKVIDEAFAEFEKKFGRKYQKIEEYRTE-DAEIIFVTMGSLAGTLKEFVDKLREEGYKV 290 (394)
T ss_pred CCCCCceEEEEeecHHHHHHhHHHHHHHHHHHHHHhCCccceeEEeCCC-CCCEEEEEeCccHHHHHHHHHHHHhcCCcc
Confidence 11 122211 0011 279999999999999999999999999999
Q ss_pred EEEEcccccccCcccHHHHhccCCCCCeeEEEEecCCcccc
Q 006816 544 RVVSLVCWRLFDRQPAEYKEKVLPSRVVKRVSVEAGSSVGW 584 (630)
Q Consensus 544 ~Vi~~~~i~pld~~~~~~~~~v~~~~~~~~v~vEe~~~~g~ 584 (630)
.++-++++.||+.+.+. .+++..+++ +|+|-+...|.
T Consensus 291 Gllri~~~rPFP~~~i~---~~l~~~k~V-iVvE~n~s~g~ 327 (394)
T PRK08367 291 GAAKLTVYRPFPVEEIR---ALAKKAKVL-AFLEKNISFGL 327 (394)
T ss_pred eeEEEeEecCCCHHHHH---HHHccCCEE-EEEeCCCCCCC
Confidence 99999999999998664 455554455 99999877654
No 157
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=98.79 E-value=1.9e-07 Score=105.33 Aligned_cols=205 Identities=16% Similarity=0.159 Sum_probs=144.5
Q ss_pred ccccccchHHHHHHHHHHHhcCCCCceEeeehHHHHHhhHHHHHHhcccCCCeEEEEecCCCCCCCCCCCCCChhhhHHh
Q 006816 367 NIRYGVREHAMAGISNGVALHGGGLIPFAATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQLAGL 446 (630)
Q Consensus 367 ~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~~g~~G~tHq~~~d~a~l 446 (630)
.+--.=+|.+++++|.|.|..| .|.+..|=+.=+.++.|.|..++...+|++++. .++.|.+..-+|+....|+-+.
T Consensus 239 ~~~q~E~E~aA~~~a~GAs~aG--~Ra~taTSg~Gl~lm~E~l~~a~~~~~P~Vi~~-~~R~gpstg~~t~~eq~D~~~~ 315 (562)
T TIGR03710 239 VVVQAEDEIAAINMAIGASYAG--ARAMTATSGPGFALMTEALGLAGMTETPLVIVD-VQRGGPSTGLPTKTEQSDLLFA 315 (562)
T ss_pred EEEeeccHHHHHHHHHhHHhcC--CceeecCCCCChhHhHHHHhHHHhccCCEEEEE-cccCCCCCCCCCCccHHHHHHH
Confidence 3334469999999999999999 999988755545688999988888999988885 5666555445788888887666
Q ss_pred hcCC----CcEEEecCChHHHHHHHHHHHHc---CCCcEEEEEc------CCCcc-c---ccC-----------CC----
Q 006816 447 RAVP----RLLAFRPADGNETAGSYRVAIAN---RDVPSVIALS------RQKIA-A---NLE-----------GT---- 494 (630)
Q Consensus 447 ~~iP----~l~v~~P~d~~e~~~~l~~a~~~---~~~P~~ir~~------r~~~~-~---~~~-----------~~---- 494 (630)
+.-- ++.|++|+|.+|+..+...|++- ..-|++++.. ++.+. + .+. +.
T Consensus 316 ~~~~hgd~~~ivl~p~~~qEa~d~~~~Af~lAe~~~~PViv~~D~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (562)
T TIGR03710 316 LYGGHGEFPRIVLAPGSPEECFYLAIEAFNLAEKYQTPVIVLSDQYLANSYETVPPPDLDDLPIIDRGKVLEPEEEYKRY 395 (562)
T ss_pred hcCCCCCcCceEEcCCCHHHHHHHHHHHHHHHHHhcCCEEEEechHHhCCceeccCCChhhcccccccccccCCCCCCCC
Confidence 5432 38999999999999988877643 3579998752 11110 0 000 00
Q ss_pred --cc---cc-ccccc---------------------------------------------EEEecCCCCCCCcEEEEEeC
Q 006816 495 --SA---DE-VERGG---------------------------------------------YIVSDNSSENKPEIILIGTG 523 (630)
Q Consensus 495 --~~---~~-~~~G~---------------------------------------------~~~~~~~~~G~~dvtiva~G 523 (630)
.. .. ...|. +.... .+ +.|+.||++|
T Consensus 396 ~~~~~~~~~~~~pg~~~~~~~~~~~~~~e~g~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~--~~-da~~~iv~~G 472 (562)
T TIGR03710 396 ELTEDGISPRAIPGTPGGIHRATGDEHDETGHISEDPENRVKMMEKRARKLETIAKEIPEPEVYG--DE-DADVLVIGWG 472 (562)
T ss_pred CcCCCCCCCCCcCCCCCceEEecCCccCCCCCcCCCHHHHHHHHHHHHHHHHHHHhhCCCceeec--CC-CCCEEEEEeC
Confidence 00 00 00010 00011 11 2679999999
Q ss_pred chHHHHHHHHHHHHhcCCceEEEEcccccccCcccHHHHhccCCCCCeeEEEEecCCc
Q 006816 524 TELSLCEGTAKTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLPSRVVKRVSVEAGSS 581 (630)
Q Consensus 524 ~~v~~a~~aa~~L~~~gi~~~Vi~~~~i~pld~~~~~~~~~v~~~~~~~~v~vEe~~~ 581 (630)
++...+.+|.+.|+++|+++.++.++++.||+.+.+. .+++...++ +|+|.+..
T Consensus 473 s~~~~~~eav~~lr~~G~kvg~l~~~~~~PfP~~~i~---~~l~~~k~v-~VvE~n~~ 526 (562)
T TIGR03710 473 STYGAIREAVERLRAEGIKVALLHLRLLYPFPKDELA---ELLEGAKKV-IVVEQNAT 526 (562)
T ss_pred CCHHHHHHHHHHHHhcCCeEEEEEeCeecCCCHHHHH---HHHhcCCEE-EEEccChh
Confidence 9999999999999999999999999999999998664 344444345 89999854
No 158
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=98.78 E-value=1e-07 Score=98.03 Aligned_cols=129 Identities=19% Similarity=0.196 Sum_probs=99.5
Q ss_pred cccccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCC
Q 006816 97 GIEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHN 176 (630)
Q Consensus 97 ~~~~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~ 176 (630)
...+..+.+|.+.+.|.|++.|.+.++ ++..|||+.|||.+-. .-.++|..|...+.+.+++|+||.-|
T Consensus 63 ~~~~~~~~fg~~~a~a~Gi~~a~~~~~----------~~~~Vv~~~GDG~~~d-IG~~~L~~a~~r~~ni~~ivlDNe~Y 131 (299)
T PRK11865 63 NVPWIHVAFENAAAVASGIERAVKALG----------KKVNVVAIGGDGGTAD-IGFQSLSGAMERGHNILYLMYDNEAY 131 (299)
T ss_pred ccccchhhhcchHHHHHHHHHHHHHhc----------CCCeEEEEeCCchHhh-ccHHHHHHHHHcCCCeEEEEECCccc
Confidence 355677889999999999999987654 4678999999998843 33589999999998866666666666
Q ss_pred cccccccc----------------------cChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEe
Q 006816 177 TIDGPTSL----------------------VLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVK 234 (630)
Q Consensus 177 ~i~~~~~~----------------------~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~ 234 (630)
+..+.+.. ....|+..++.++|..++..++-. |+.++.+++++|.+ .++|++|++.
T Consensus 132 ~nTGgQ~S~~Tp~Ga~t~tsp~Gk~~~G~~~~kkd~~~Ia~a~g~~YVA~~~~~-~~~~l~~~i~~A~~-~~Gps~I~v~ 209 (299)
T PRK11865 132 MNTGIQRSGSTPFGASTTTSPAGKYSRGEDRPKKNMPLIMAAHGIPYVATASIG-YPEDFMEKVKKAKE-VEGPAYIQVL 209 (299)
T ss_pred cCCCCCCCCCCCCCcccccCCCCcccCCCCCCCCCHHHHHHHcCCCEEEEEeCC-CHHHHHHHHHHHHh-CCCCEEEEEE
Confidence 54332211 013578899999999888655767 99999999999998 7999999998
Q ss_pred eccc
Q 006816 235 KMRE 238 (630)
Q Consensus 235 t~k~ 238 (630)
+.--
T Consensus 210 sPC~ 213 (299)
T PRK11865 210 QPCP 213 (299)
T ss_pred CCCC
Confidence 6443
No 159
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=98.59 E-value=3.4e-08 Score=99.26 Aligned_cols=119 Identities=19% Similarity=0.238 Sum_probs=95.9
Q ss_pred cccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCcccc
Q 006816 101 TTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDG 180 (630)
Q Consensus 101 ~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~ 180 (630)
..|+||+.+|+|+|...|. |++.|+++.||-.|| ...|+|...+++|||-+.+++||..+++.+
T Consensus 417 qagplgwtipaalgv~~ad--------------p~r~vvalsgdydfq--fmieelavgaq~k~pyihv~vnnaylglir 480 (592)
T COG3960 417 QAGPLGWTIPAALGVCAAD--------------PKRNVVAISGDYDFQ--FLIEELAVGAQFKIPYIHVLVNNAYLGLIR 480 (592)
T ss_pred ccCCcccccchhhceeecC--------------CCCceEEeecCchHH--HHHHHHhhhhcccCceEEEEecchHHHHHH
Confidence 4689999999999999887 899999999999999 999999999999999777777766656555
Q ss_pred cccccC---------------------hhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHh---cCCCcEEEEEeec
Q 006816 181 PTSLVL---------------------SEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAAN---ETKKPTFIRVKKM 236 (630)
Q Consensus 181 ~~~~~~---------------------~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~---~~~~P~~i~~~t~ 236 (630)
+.+..+ ..|-.+.++++|++.++| . +++++..++++|+. ...-|+++++...
T Consensus 481 qaqr~f~mdy~v~laf~nin~~~~~gygvdhv~v~eglgckairv---~-~p~e~a~af~~a~~lm~eh~vpvvve~ile 556 (592)
T COG3960 481 QAQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRV---F-KPEDIAPAFEQAKALMAQHRVPVVVEVILE 556 (592)
T ss_pred HHHhcCCccceeeehhhccCCccccccCccceeehhccCceeEEe---c-ChHHhhHHHHHHHHHHHhcCCCeeeehHHH
Confidence 443221 124456788999999999 6 89999999988753 2578999998755
Q ss_pred ccc
Q 006816 237 RER 239 (630)
Q Consensus 237 k~~ 239 (630)
|-.
T Consensus 557 rvt 559 (592)
T COG3960 557 RVT 559 (592)
T ss_pred Hhh
Confidence 543
No 160
>KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=98.54 E-value=4.7e-05 Score=83.53 Aligned_cols=461 Identities=13% Similarity=0.071 Sum_probs=257.1
Q ss_pred cccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccC-chhHHHHHHHhHHcC--CCcEEEEEECCCCccc
Q 006816 103 GPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAM-EGISHEAAALAAHWK--LNKLTLIYDDNHNTID 179 (630)
Q Consensus 103 G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~-eG~~~eal~~a~~~~--L~~li~i~~~N~~~i~ 179 (630)
.+|-..=|..+|---|..+..... ......-+.+-||++|. +|.++|.+.+...-+ -.-.|-|+-||.++..
T Consensus 374 SHLEA~DPVV~GKtrA~q~y~~D~-----~~~k~m~ILiHGDaaFAgQGVVyET~hls~LP~YtT~GTvHvVvNNQIgFT 448 (1017)
T KOG0450|consen 374 SHLEAVDPVVMGKTRAEQFYTGDE-----EGKKVMGILIHGDAAFAGQGVVYETFHLSDLPSYTTGGTVHVVVNNQIGFT 448 (1017)
T ss_pred hhhcccCceeechHHHHHHhcccc-----ccceeEEEEEecchhhccCceEEEeeccccCCCcccCCeEEEEEccccccc
Confidence 455555577778777765443221 12456778889999996 488999887654321 1226777778877665
Q ss_pred cccccc-ChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHH---HhcCCCcEEEEEeecccccCcccCCC--CCC---
Q 006816 180 GPTSLV-LSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAA---ANETKKPTFIRVKKMRERVNWVDRDQ--FHV--- 250 (630)
Q Consensus 180 ~~~~~~-~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a---~~~~~~P~~i~~~t~k~~~g~~~~~~--~~~--- 250 (630)
+...-. ..+--...+++.+.+.+.| +++ |++++--+++-| |+.-.+-++|.+-++|.+ ||..-|. |--
T Consensus 449 TDPR~aRSspYcTDvar~v~aPIFHV-NaD-D~EAV~~vc~vAAeWR~tFh~DvVVDlVcyRR~-GHNE~DeP~FTQPlM 525 (1017)
T KOG0450|consen 449 TDPRFARSSPYCTDVARVVNAPIFHV-NAD-DPEAVMHVCKVAAEWRKTFHKDVVVDLVCYRRH-GHNEIDEPMFTQPLM 525 (1017)
T ss_pred cCcccccCCCCchhHHHHhCCCeEee-cCC-ChHHHHHHHHHHHHHHHHhccCeEEEEEEEeec-CCCcccCccccchHH
Confidence 443321 1222345678889999999 999 999987776644 322356799999999998 9965432 211
Q ss_pred ------ChHHHHHHHHhh-hhchhHHHHHHHHHHh--------hhhcCCchhHhHHHHhcCC-----CCCCcccc-----
Q 006816 251 ------IPMVYREMQIQT-DHGERLEKEWCSKVYN--------YRSKYPHEGAELDLLLNGG-----LLPGWENA----- 305 (630)
Q Consensus 251 ------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~-----~p~~~~~~----- 305 (630)
-+.+++.|.+++ .+|..+.++.++...+ +..............+..+ .|..-+..
T Consensus 526 Yk~I~k~~~~l~~Y~ekLl~egtvs~~evd~~~~k~~~I~eeafe~sKd~~~~~~rdWL~spW~gF~spd~~~~i~~~~~ 605 (1017)
T KOG0450|consen 526 YKQIRKHKPVLQKYAEKLLSEGTVSQQEVDEEIKKYDNILEEAFERSKDYKPLHIRDWLDSPWPGFFSPDGQPKILPCPS 605 (1017)
T ss_pred HHHHHcCCcHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhcCCCccccCccCCCccccCCC
Confidence 123455565543 4454443333322211 1111000000001111100 01000000
Q ss_pred -----------------CCC-CCC--C-------------CCCchHHHHHHHHHH--HHHHhCCCeEEEecCCCCCcccc
Q 006816 306 -----------------LPK-WST--S-------------DPLDATRGYSEKCLN--QLAKVLPGLIGGSADLASSNKAY 350 (630)
Q Consensus 306 -----------------~~~-~~~--~-------------~~~~~~r~a~~~~L~--~l~~~~~~iv~~~aD~~~s~~~~ 350 (630)
+|+ |+. + ++.+.+ +.+++|. .|.++.-.|.+-+.|+..+++..
T Consensus 606 Tgv~~e~L~~ig~~~ss~PE~F~~Hrgl~Ril~~R~~mi~~~~iDw--al~EalAFgsLl~EG~hVRlSGQDVERGTFSh 683 (1017)
T KOG0450|consen 606 TGVKEEILKHIGKVASSVPEGFKIHRGLKRILKNRAQMIKSEGVDW--ALAEALAFGSLLKEGIHVRLSGQDVERGTFSH 683 (1017)
T ss_pred CCCCHHHHHHHHHhhccCCcccchhhhHHHHHHHHHHhhhhcccch--HHHHHHHHHHHHhcCceEEeeccccccccccc
Confidence 110 100 0 011111 3344433 56667777889999998766542
Q ss_pred c-ccccCc------CCC--CCCCCC----ccccccchHHHHHHHHHHHhcCCCCceEee-ehHHHH---HhhHHHHHHhc
Q 006816 351 L-LGYHDF------SQP--DSPWGR----NIRYGVREHAMAGISNGVALHGGGLIPFAA-TFLIFS---DYMKNSIRLSA 413 (630)
Q Consensus 351 ~-~~~~~f------~~~--~~~p~R----~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~-~~~~F~---~~a~dqi~~~a 413 (630)
- ..+.+- +-+ .-.|++ +-|+-++|-+.+|+--|+++..+...++.+ .|.+|. |...||..-.+
T Consensus 684 RH~VLHDQ~~d~~~y~PlnhL~~~Qa~ytV~NSSLSEygVLGFElGYsm~sPNaLVlWEAQFGDFaNtAQ~IiDQFIssG 763 (1017)
T KOG0450|consen 684 RHHVLHDQEVDKRTYIPLNHLWPNQAPYTVCNSSLSEYGVLGFELGYSMASPNALVLWEAQFGDFANTAQCIIDQFISSG 763 (1017)
T ss_pred chhhhcccccCcceecchhhcCCCCCceeeeccchhhhheecceecccccCCCceEEeehhhccccccchhhHHhHhccc
Confidence 1 011000 000 112333 558999999999999999998855666776 599997 57889965432
Q ss_pred ----ccCCCeEEEEecCCCCCCCCCCCCCChhhhHHhh-------cCC-------------CcEEEecCChHHHHHHHHH
Q 006816 414 ----LSHAGVIYILTHDSIGLGEDGPTHQPVEQLAGLR-------AVP-------------RLLAFRPADGNETAGSYRV 469 (630)
Q Consensus 414 ----~~~~pv~~v~~~~g~~~g~~G~tHq~~~d~a~l~-------~iP-------------~l~v~~P~d~~e~~~~l~~ 469 (630)
+....+++.. +.|+. | .||-|.+---.-+|. .+| |+.|+.++++.....+|+.
T Consensus 764 qaKW~rqsGlVllL-PHGye-G-~GPEHSSaR~ERfLQm~nddp~~~p~~~~~~~~Ql~dcNw~vvn~tTPaNyfHvLRR 840 (1017)
T KOG0450|consen 764 QAKWVRQSGLVLLL-PHGYE-G-MGPEHSSARPERFLQMSNDDPDVFPDEEEFLQRQLQDCNWQVVNCTTPANYFHVLRR 840 (1017)
T ss_pred hhhhhhhcCeEEEc-cCCcC-C-CCcccccccHHHHHHhccCCCccCCcccHHHHHHHhcCCeEEEecCChHHHHHHHHH
Confidence 3345566654 44442 3 588886543333322 122 5889999999999999986
Q ss_pred HHH-cCCCcEEEEEcCCCcc-cccCCCccccccc-----------ccEEEecCCCCCCCcEEEEEeCchHHHHHHHHHHH
Q 006816 470 AIA-NRDVPSVIALSRQKIA-ANLEGTSADEVER-----------GGYIVSDNSSENKPEIILIGTGTELSLCEGTAKTL 536 (630)
Q Consensus 470 a~~-~~~~P~~ir~~r~~~~-~~~~~~~~~~~~~-----------G~~~~~~~~~~G~~dvtiva~G~~v~~a~~aa~~L 536 (630)
-+. .-..|.+|..||..+. |... .+...+.. |+..... + + -+=.|+++|-....-.++.+..
T Consensus 841 Qi~~~FRKPliif~pKsLLRHp~ar-S~~~ef~~g~~fq~vi~e~g~~~~~p--e-~-vkrlv~csGkVyydL~k~Rk~~ 915 (1017)
T KOG0450|consen 841 QIHRPFRKPLIIFTPKSLLRHPEAR-SSFSEFDEGTGFQRVIPEDGKAAQNP--E-N-VKRLVFCSGKVYYDLTKERKEV 915 (1017)
T ss_pred HhhhcccCceEEeccHHhhcCcccc-CCHHHhccCCCCceeccccccccCCh--h-h-ceEEEEecceEehhhhHHHHhc
Confidence 554 3468999998876541 1100 01111211 2221111 2 2 3556778898665444444433
Q ss_pred HhcCCceEEEEcccccccCcccHHHHhccCC-CCCeeEEEEecCCcccc
Q 006816 537 RQEGRRVRVVSLVCWRLFDRQPAEYKEKVLP-SRVVKRVSVEAGSSVGW 584 (630)
Q Consensus 537 ~~~gi~~~Vi~~~~i~pld~~~~~~~~~v~~-~~~~~~v~vEe~~~~g~ 584 (630)
. ..-++.+.-+-.|.||..+.+. .++.+ .+..++..-||+...|.
T Consensus 916 ~-~~~~vAi~RvEQl~PFp~dli~--~e~~~YpnaEivWcQEE~~NmG~ 961 (1017)
T KOG0450|consen 916 G-LEGDVAITRVEQLSPFPFDLIQ--QELNKYPNAEIVWCQEEHKNMGA 961 (1017)
T ss_pred C-cccceeEEEeeccCCCcHHHHH--HHHHhCCCceeeehhhhhcccCc
Confidence 2 1236778888899999887665 23322 23345567788887774
No 161
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=98.42 E-value=3.2e-05 Score=88.38 Aligned_cols=459 Identities=15% Similarity=0.084 Sum_probs=240.3
Q ss_pred cccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEE--EEEcccccC-chhHHHHHHHhHHcC--CCcEEEEEECCCCc
Q 006816 103 GPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTY--CIMSDGCAM-EGISHEAAALAAHWK--LNKLTLIYDDNHNT 177 (630)
Q Consensus 103 G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~--~~~GDG~~~-eG~~~eal~~a~~~~--L~~li~i~~~N~~~ 177 (630)
.+|=.--|+..|.+-|..... .+. ...+|+ .+.||.+++ +|.+.|.+++....+ ..-.+-|+-||.++
T Consensus 298 SHLE~v~PVV~G~vRa~Qd~~---~d~----~~~k~lpiliHGDAAfaGQGVV~Etlnls~~~gysvgGtiHiviNNQiG 370 (906)
T COG0567 298 SHLEIVNPVVEGSVRAKQDRL---GDT----ERDKVLPILIHGDAAFAGQGVVAETLNLSRLDGYSVGGTWHIVINNQIG 370 (906)
T ss_pred chhhhhchhhhcchHhhhhhh---ccC----ccceeEEEEEecChhcCCccHHHHHHHhhCCCCcccCCeEEEEEecCCC
Confidence 455566688888888764332 111 222444 899999996 499999999987654 44466677777776
Q ss_pred ccccccccC-hhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHH---HhcCCCcEEEEEeecccccCcccCCC-CCCCh
Q 006816 178 IDGPTSLVL-SEDISARFKSLGWNTIMVENIHDNLSSFKEALMAA---ANETKKPTFIRVKKMRERVNWVDRDQ-FHVIP 252 (630)
Q Consensus 178 i~~~~~~~~-~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a---~~~~~~P~~i~~~t~k~~~g~~~~~~-~~~~~ 252 (630)
-.+...... .+--.+.++.++.+++.| +|. |++++..+.+.| ++.-.++++|.+-++|.+ ||...+. -...+
T Consensus 371 FTTsp~~sRSt~Y~TDvAKm~~aPifHV-N~D-DPEAv~~a~~~A~e~R~~F~kDvvIDlvcYRr~-GHNE~DePs~TqP 447 (906)
T COG0567 371 FTTSPADARSTPYCTDVAKMIEAPIFHV-NAD-DPEAVLFAPALALEYRNGFKKDVVIDLVCYRRH-GHNEGDEPSVTQP 447 (906)
T ss_pred CCCCcccccCCCCCCChhhccCCceeec-ccC-CchhhhhhHHHHHHHHhhcCCCeeeecccCCCC-CCCccccccccCH
Confidence 655533222 222234567789999999 999 999987776654 222678999999999998 9865442 11112
Q ss_pred HH----------HHHHHHhh-hhchhHHHHHHHHHHhhhhc---CCchhHhHH------HHhcCC---CCCCcccc----
Q 006816 253 MV----------YREMQIQT-DHGERLEKEWCSKVYNYRSK---YPHEGAELD------LLLNGG---LLPGWENA---- 305 (630)
Q Consensus 253 ~~----------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~------~~~~~~---~p~~~~~~---- 305 (630)
.. .+.|.+++ .+|..+.++.....+.+... ..+..+... ....+. .+......
T Consensus 448 ~mY~~I~~h~t~r~~ya~~Lv~~gvis~~~~~~~~~~~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~v~~~ 527 (906)
T COG0567 448 LMYQKIKKHPTVRKLYADKLIAEGVISEEEADELVNDYRDALDQGFEVVKEYKEMDWLEGDWSGYLNAGLRHVDTGVPKK 527 (906)
T ss_pred HHHHHHhcCCChhhhHHHHHHhhccccHHHHHHHHHHHHHHhhhhhhHHhHHHhhhccccccccccCCcccccccccCHH
Confidence 22 22333322 22322222221111111100 000000000 000000 00000000
Q ss_pred -----------CCC-CC----------------CCCCCchHHHHHHHHH--HHHHHhCCCeEEEecCCCCCcccccc-c-
Q 006816 306 -----------LPK-WS----------------TSDPLDATRGYSEKCL--NQLAKVLPGLIGGSADLASSNKAYLL-G- 353 (630)
Q Consensus 306 -----------~~~-~~----------------~~~~~~~~r~a~~~~L--~~l~~~~~~iv~~~aD~~~s~~~~~~-~- 353 (630)
.|. +. .+...... +..++| .-++.....+.+-+.|.+.+++..-. .
T Consensus 528 ~L~~L~~kl~~~Pe~f~~h~~v~~~~~~r~~~~~~~~~iDW--~~aE~LAfatll~eG~~iRlsGqDs~RGTF~hRHaVl 605 (906)
T COG0567 528 TLKELGKKLCTIPEGFEVHPRVKKILEDRKAMAEGGQGIDW--GMAETLAFATLLDEGHPIRLSGQDSGRGTFSHRHAVL 605 (906)
T ss_pred HHHHHHHHhhcCCcceehhHHHHHHHHHHHHHhccccccch--hHHHHhcccceeccCCccccccccCCCcCccccceee
Confidence 000 00 00000111 111111 12333445566677777665543210 0
Q ss_pred ----c-cCcC-----CCCCCCCCccccccchHHHHHHHHHHHhcCCCCceEe-eehHHHH---HhhHHHHHHhc----cc
Q 006816 354 ----Y-HDFS-----QPDSPWGRNIRYGVREHAMAGISNGVALHGGGLIPFA-ATFLIFS---DYMKNSIRLSA----LS 415 (630)
Q Consensus 354 ----~-~~f~-----~~~~~p~R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~-~~~~~F~---~~a~dqi~~~a----~~ 415 (630)
+ ..|. ....-.=.+.|++++|.+++|+=-|.++.-+-...+. ..|.+|. |..+||...+. ..
T Consensus 606 hdq~~~~~y~PL~~l~~~q~~f~v~nS~LSEeAvlgFEYGYs~~~p~~lvlWEAQFGDFaNgAQvviDQfisSge~KW~r 685 (906)
T COG0567 606 HDQKTGETYIPLNHLSKGQGKFEVINSPLSEEAVLGFEYGYSLANPKTLVLWEAQFGDFANGAQVVIDQFISSGEQKWGR 685 (906)
T ss_pred ecccCccccChhhhcccccceEEEEechhhHHHHHhhhhhhhhcCCchhhhhhhhhcccccCCeeeeccccccHHHHHHH
Confidence 0 0110 0001112367999999999999999999862233333 3688887 46778854432 23
Q ss_pred CCCeEEEEecCCCCCCCCCCCCCChhhhHHhh--cCCCcEEEecCChHHHHHHHH-HHHHcCCCcEEEEEcCCCcc-ccc
Q 006816 416 HAGVIYILTHDSIGLGEDGPTHQPVEQLAGLR--AVPRLLAFRPADGNETAGSYR-VAIANRDVPSVIALSRQKIA-ANL 491 (630)
Q Consensus 416 ~~pv~~v~~~~g~~~g~~G~tHq~~~d~a~l~--~iP~l~v~~P~d~~e~~~~l~-~a~~~~~~P~~ir~~r~~~~-~~~ 491 (630)
...+++... .|+ -| .||.|.+--...+|. +=-||+|..|+++.....+++ ++++....|.++..||.... +..
T Consensus 686 ~sgLv~lLP-Hgy-EG-QGPEHSSaRlER~LQLcaE~NmqV~~pstpaq~fHlLRrq~~r~~rkPLiimtPKslLR~~~a 762 (906)
T COG0567 686 MSGLVMLLP-HGY-EG-QGPEHSSARLERFLQLCAENNMQVVVPSTPAQYFHLLRRQALRDFRKPLIVMTPKSLLRHKLA 762 (906)
T ss_pred hcCceEEcc-CCC-CC-CCCcCccchhHHHHHhhHHhCCEEEecCcHHHHHHHHHHHHhhcccCceEecChhhhhhcccc
Confidence 455565553 333 23 589998765555654 335899999999999999997 45665568999987776441 100
Q ss_pred CCCcccccccccEE-EecC-CCCC-CCcEEEEEeCchHHHHHHHHHHHHhcC-CceEEEEcccccccCcccHHHHhccCC
Q 006816 492 EGTSADEVERGGYI-VSDN-SSEN-KPEIILIGTGTELSLCEGTAKTLRQEG-RRVRVVSLVCWRLFDRQPAEYKEKVLP 567 (630)
Q Consensus 492 ~~~~~~~~~~G~~~-~~~~-~~~G-~~dvtiva~G~~v~~a~~aa~~L~~~g-i~~~Vi~~~~i~pld~~~~~~~~~v~~ 567 (630)
. .....+..|++. +... .... +-.-++++.|-+.....+.. ++.| .++-++=+..+.||..+.+. +.+.
T Consensus 763 ~-S~~~el~~~~F~~vl~d~~~~~~~v~rvvlcSGKvyydl~~~r---~~~g~~dvaiiRiEqLyPfP~~~l~---~~l~ 835 (906)
T COG0567 763 V-SSLEELTEGTFQPVLEDIDELDPKVKRVVLCSGKVYYDLLEQR---EKDGRDDVAIVRIEQLYPFPAKALA---ALLA 835 (906)
T ss_pred C-CchhhhchhhhhhhhccccccccceeeEEeeccchHHHHHHHH---hhcCCcceeEEeeecccCchHHHHH---HHHH
Confidence 0 111122223322 1110 0001 01334556666544333322 3344 36788888999999987764 2222
Q ss_pred C---CCeeEEEEecCCccc
Q 006816 568 S---RVVKRVSVEAGSSVG 583 (630)
Q Consensus 568 ~---~~~~~v~vEe~~~~g 583 (630)
. ...++..-||....|
T Consensus 836 ~y~~~~e~vW~QEEp~N~G 854 (906)
T COG0567 836 KYPNVKEFVWCQEEPKNQG 854 (906)
T ss_pred hccccccccccccCCCccc
Confidence 1 122335566655555
No 162
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=98.29 E-value=3.3e-05 Score=93.80 Aligned_cols=202 Identities=16% Similarity=0.133 Sum_probs=133.0
Q ss_pred cchHHHHHHHHHHHhcCCCCceEeeehHHHHHhhHHHHHHhcccCCCeEEEEecCCCCCCCCCCCCCChhhhHHhhcCCC
Q 006816 372 VREHAMAGISNGVALHGGGLIPFAATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAVPR 451 (630)
Q Consensus 372 IaE~~~vg~a~GlA~~G~~~~pv~~~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~~g~~G~tHq~~~d~a~l~~iP~ 451 (630)
=+|.+.++++.|-+..| .+.+..|=+.=+.++.+.|...+-+.+|+++.. ..+.+.+..+..|....|+...|.. |
T Consensus 58 EsE~~A~~av~GA~~aG--ara~T~TSs~GL~LM~e~l~~~ag~~~P~Vi~v-a~R~~~~~~~~i~~dh~Dv~~~R~~-G 133 (1165)
T TIGR02176 58 QSEAGAAGAVHGALQTG--ALTTTFTASQGLLLMIPNMYKIAGELLPCVFHV-SARAIAAHALSIFGDHQDVMAARQT-G 133 (1165)
T ss_pred cchHHHHHHHHhHhhcC--CCEEEecChhHHHHHHHHHHHHHhccCCEEEEE-ecCCCCCCCCccCCCchHHHHhhcC-C
Confidence 37999999999988888 887777655555678888866666689988875 3443332223445555576555544 6
Q ss_pred cEEEecCChHHHHHHHHHHHH---cCCCcEEEEEcC-----C--Ccccc---------cCCCcc-----------ccc--
Q 006816 452 LLAFRPADGNETAGSYRVAIA---NRDVPSVIALSR-----Q--KIAAN---------LEGTSA-----------DEV-- 499 (630)
Q Consensus 452 l~v~~P~d~~e~~~~l~~a~~---~~~~P~~ir~~r-----~--~~~~~---------~~~~~~-----------~~~-- 499 (630)
+.+++|++.+|+..+-..|.+ ....|+++.+.- . .+ .. ++.... ...
T Consensus 134 ~ivl~s~svQEa~D~al~A~~lAe~~~~Pvi~~~Dgf~tsh~~~~v-~~~~~~~v~~~~~~~~~~~~~~~~l~~~~p~~~ 212 (1165)
T TIGR02176 134 FAMLASSSVQEVMDLALVAHLATIEARVPFMHFFDGFRTSHEIQKI-EVLDYEDMASLVNQELVAAFRKRSMNPEHPHVR 212 (1165)
T ss_pred eEEEeCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCceeccccccc-cCCCHHHHHhhcChhhcccccccccCCCCCcee
Confidence 899999999999887665543 126788875431 1 11 00 000000 000
Q ss_pred ------------------------------------ccc-cEEEecC-CCCCCCcEEEEEeCchHHHHHHHHHHHHhcCC
Q 006816 500 ------------------------------------ERG-GYIVSDN-SSENKPEIILIGTGTELSLCEGTAKTLRQEGR 541 (630)
Q Consensus 500 ------------------------------------~~G-~~~~~~~-~~~G~~dvtiva~G~~v~~a~~aa~~L~~~gi 541 (630)
..| .|...+. ..+. .+.+||++|+....+.+|.+.|+++|+
T Consensus 213 G~~~~~~~~~~~~e~~~~~~~~~~~~v~~~~~k~~~~~gr~y~~~e~yg~~d-Ae~ViV~~GS~~~~~~eav~~Lr~~G~ 291 (1165)
T TIGR02176 213 GTAQNPDIYFQGREAVNPYYLAVPGIVQKYMDKIAKLTGRSYHLFDYYGAPD-AERVIIAMGSVAETIEETVDYLNAKGE 291 (1165)
T ss_pred CCCCCcchhhhhHHHHHHHHhhhHHHHHHHHHHHHHHhCCccCcceecCCCC-CCEEEEEeCCCHHHHHHHHHHHHhcCC
Confidence 011 1111110 0112 689999999999999999999999999
Q ss_pred ceEEEEcccccccCcccHHHHhccCC-CCCeeEEEEecCCccc
Q 006816 542 RVRVVSLVCWRLFDRQPAEYKEKVLP-SRVVKRVSVEAGSSVG 583 (630)
Q Consensus 542 ~~~Vi~~~~i~pld~~~~~~~~~v~~-~~~~~~v~vEe~~~~g 583 (630)
++.+|.++.+.||+.+.+. .+++ +-+++ +|+|.....|
T Consensus 292 kVGli~vr~~rPFp~e~l~---~aLp~svK~I-~Vler~~~~g 330 (1165)
T TIGR02176 292 KVGLLKVRLYRPFSAETFF---AALPKSVKRI-AVLDRTKEPG 330 (1165)
T ss_pred ceeEEEEeEeCCCCHHHHH---HHHHhcCCEE-EEEECCCCCC
Confidence 9999999999999998664 3343 33344 8999886544
No 163
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=97.91 E-value=0.00011 Score=75.76 Aligned_cols=117 Identities=20% Similarity=0.155 Sum_probs=86.9
Q ss_pred cccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEccc-ccCchhHHHHHHHhHHcCCCcEEEEEECCCCccccc
Q 006816 103 GPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDG-CAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGP 181 (630)
Q Consensus 103 G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG-~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~ 181 (630)
+.-|-+++.|.|+.+|+ ++..||++.||| ++. .-...+..+.+.+.+..++++||.-|+..+-
T Consensus 70 s~~gra~a~atGik~A~--------------~~l~Viv~gGDG~~~d--IG~~~l~h~~~Rn~dit~iv~DNevYgnTgg 133 (294)
T COG1013 70 SLHGRAAAVATGIKLAN--------------PALSVIVIGGDGDAYD--IGGNHLIHALRRNHDITYIVVDNEVYGNTGG 133 (294)
T ss_pred eccCcchhhHHHHHHhc--------------cCCeEEEEecchhHhh--hhhHHHHHHHHcCCCeEEEEECCeecccCCC
Confidence 45578899999999999 678999999999 555 4456899999999886666666666655332
Q ss_pred cccc------------------ChhcHHHHHHhCCCeEE-EEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeeccc
Q 006816 182 TSLV------------------LSEDISARFKSLGWNTI-MVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRE 238 (630)
Q Consensus 182 ~~~~------------------~~~~~~~~~~a~G~~~~-~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~ 238 (630)
+... ..-|+..++-++|..++ ++-- - ++..+.+.+++|.+ .+||++|++.+.--
T Consensus 134 Q~S~tTp~G~~t~t~p~Gk~~~~k~d~~~la~a~G~~yVAr~~~-~-~~~~l~~~i~kA~~-~~Gps~I~v~sPC~ 206 (294)
T COG1013 134 QASPTTPKGAKTKTTPYGKRSEKKKDPGLLAMAAGATYVARASV-G-DPKDLTEKIKKAAE-HKGPSFIDVLSPCP 206 (294)
T ss_pred ccCCCCCCCceeeecCCCCCcCCCCCHHHHHHHCCCCeEEEecc-c-CHHHHHHHHHHHHh-ccCCeEEEEecCCC
Confidence 2110 12378888999998765 3322 2 78899999999987 68999999986443
No 164
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=97.86 E-value=4.3e-05 Score=84.15 Aligned_cols=116 Identities=20% Similarity=0.250 Sum_probs=91.0
Q ss_pred cccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCcccc
Q 006816 101 TTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDG 180 (630)
Q Consensus 101 ~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~ 180 (630)
++-.||.+++.|-|++++. ++++++++|||.|-. .-..++..|+..+.+.+++|+||.--++.+
T Consensus 426 ~t~~mGssig~a~g~~~~~---------------~k~~va~iGDsTF~H-sGi~~l~nAV~n~~~~~~vvLdN~~tAMTG 489 (640)
T COG4231 426 TTTMMGSSIGIAGGLSFAS---------------TKKIVAVIGDSTFFH-SGILALINAVYNKANILVVVLDNRTTAMTG 489 (640)
T ss_pred hhhhccchhhhcccccccc---------------CCceEEEeccccccc-cCcHHHHHHHhcCCCeEEEEEeccchhccC
Confidence 3456788888888888766 488999999999974 224579999999988777777766555555
Q ss_pred cccc-----------cChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEe
Q 006816 181 PTSL-----------VLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVK 234 (630)
Q Consensus 181 ~~~~-----------~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~ 234 (630)
.+.. ....++.+..+++|...+..+|=+ |.+++.+++++|++ ..+|.+|..+
T Consensus 490 gQp~pg~~~~~~g~~~~~i~iee~~r~~Gv~~v~~vdp~-~~~~~~~~~keale-~~gpsViiak 552 (640)
T COG4231 490 GQPHPGTGVAAEGTKSTAIVIEEVVRAMGVEDVETVDPY-DVKELSEAIKEALE-VPGPSVIIAK 552 (640)
T ss_pred CCCCCCcccccCCCccceeEhhHhhhhcCceeeeccCCc-chHHHHHHHHHHhc-CCCceEEEEc
Confidence 4431 113468889999999999887877 99999999999998 7899999987
No 165
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=97.86 E-value=0.00029 Score=77.81 Aligned_cols=243 Identities=13% Similarity=0.162 Sum_probs=152.1
Q ss_pred CCccccccchHHHHHHHHHHHhcCCCCceEeeehHHHHHhhHHHHHHhcccCC--CeEEEEecCCCCCCCCCCCCCChhh
Q 006816 365 GRNIRYGVREHAMAGISNGVALHGGGLIPFAATFLIFSDYMKNSIRLSALSHA--GVIYILTHDSIGLGEDGPTHQPVEQ 442 (630)
Q Consensus 365 ~R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~~~~~F~~~a~dqi~~~a~~~~--pv~~v~~~~g~~~g~~G~tHq~~~d 442 (630)
+-+|+.+..|--+..+|.|-+..| .+.++++=-.=+.++-|.+..+++... -++++. .|-- |. . +-|-..|
T Consensus 58 ~vy~e~s~NEkvA~e~a~GA~~~G--~ral~~mKhVGlNvAsDpl~s~ay~Gv~GGlviv~-aDDp--g~-~-SSqneqd 130 (640)
T COG4231 58 DVYFEWSLNEKVALETAAGASYAG--VRALVTMKHVGLNVASDPLMSLAYAGVTGGLVIVV-ADDP--GM-H-SSQNEQD 130 (640)
T ss_pred cEEEEecccHHHHHHHHHHhhhcC--ceeeEEecccccccchhhhhhhhhcCccccEEEEE-ccCC--Cc-c-cccchhH
Confidence 457788999999999999999998 888877543335689999988776643 344443 1211 11 1 1133345
Q ss_pred hHHhhcCCCcEEEecCChHHHHHHHHHHHHc---CCCcEEEEEcC------CCc--c----cccCCCc-ccccccccEEE
Q 006816 443 LAGLRAVPRLLAFRPADGNETAGSYRVAIAN---RDVPSVIALSR------QKI--A----ANLEGTS-ADEVERGGYIV 506 (630)
Q Consensus 443 ~a~l~~iP~l~v~~P~d~~e~~~~l~~a~~~---~~~P~~ir~~r------~~~--~----~~~~~~~-~~~~~~G~~~~ 506 (630)
--++...-.+-|+.|+|++|+..+.+.+++- .+.|+++|... ..+ . +...... ...-..|.|+.
T Consensus 131 sr~y~~~a~iPvLeP~d~Qea~d~~~~afelSe~~~~pVilr~ttr~~h~~~~V~~~~~~~~~~~~~~~~~~k~~~r~V~ 210 (640)
T COG4231 131 SRAYGKFALIPVLEPSDPQEAYDYVKYAFELSEKSGLPVILRTTTRVSHSRGDVEVGLNRRPIVEPEDEFFIKDPGRYVR 210 (640)
T ss_pred hHHHHHhcCceeecCCChHHHHHHHHHHHHHHHHhCCCEEEEEEeeeeccceeEEeccccCCCCccccccccCCccceee
Confidence 5677777788899999999999999988753 46799998642 111 0 0000000 11112333332
Q ss_pred ecC-----------------------C----CCC--CCcEEEEEeCchHHHHHHHHHHHHhcCCceEEEEcccccccCcc
Q 006816 507 SDN-----------------------S----SEN--KPEIILIGTGTELSLCEGTAKTLRQEGRRVRVVSLVCWRLFDRQ 557 (630)
Q Consensus 507 ~~~-----------------------~----~~G--~~dvtiva~G~~v~~a~~aa~~L~~~gi~~~Vi~~~~i~pld~~ 557 (630)
... . -.| +.++=||+.|-....+.||.+. .|+...++-+-+..||+.+
T Consensus 211 ~p~~~~~~~~~~l~~k~~a~~~~~~~~~~n~v~~~~~~~lGII~~G~ay~yVkeAl~~---lgl~~~~lklg~~~Plp~~ 287 (640)
T COG4231 211 VPANALRHRHRKLLEKWEAAEEFINANPLNRVEGSDDAKLGIIASGIAYNYVKEALED---LGLDDELLKLGTPYPLPEQ 287 (640)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhhCcccccccCCCCceEEEecCccHHHHHHHHHH---cCCCceeEEecCCcCCCHH
Confidence 110 0 002 2578899999999888887554 4899999999999999998
Q ss_pred cHHHHhccCCCCCeeEEEEecCCcccc---cccc---cCcceEEEec-cCCCCCCHHHHHHHcCCChHHHHHHHHHhhh
Q 006816 558 PAEYKEKVLPSRVVKRVSVEAGSSVGW---REYV---GVEGKVIGVE-EFGASGAYLDTFKKYGFTIDNVTKVARSLLS 629 (630)
Q Consensus 558 ~~~~~~~v~~~~~~~~v~vEe~~~~g~---~~~~---~~~~~~~g~d-~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l~ 629 (630)
.++ +.++.-.++ +|+||....== ...+ +.++...|=| .+. -...-+|++.|..+|.+++.
T Consensus 288 ~i~---~F~~g~~~v-lVVEE~~P~iE~qv~~~l~~~g~~v~v~GKd~gll--------P~~GElt~~~i~~ai~~~l~ 354 (640)
T COG4231 288 LIE---NFLKGLERV-LVVEEGEPFIEEQVKALLYDAGLPVEVHGKDEGLL--------PMEGELTPEKIANAIAKFLG 354 (640)
T ss_pred HHH---HHHhcCcEE-EEEecCCchHHHHHHHHHHhcCCceEeeccccccc--------CcccccCHHHHHHHHHHHhC
Confidence 876 334333355 99999875210 0111 1122233332 222 22345788888888887764
No 166
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=97.80 E-value=0.00011 Score=79.89 Aligned_cols=110 Identities=19% Similarity=0.134 Sum_probs=88.4
Q ss_pred hHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCccccccccc--
Q 006816 108 GVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGPTSLV-- 185 (630)
Q Consensus 108 ~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~~~~~-- 185 (630)
-++-|+|++.+. .++++.++||=++- .-...|........|.+|||+||||-+|-......
T Consensus 427 ~vSTA~Gi~~a~---------------~~ptv~liGDLS~l--hD~NgLl~~k~~~~~ltIvv~NNnGGgIF~~Lp~~~~ 489 (566)
T COG1165 427 TVSTALGIARAT---------------QKPTVALIGDLSFL--HDLNGLLLLKKVPQPLTIVVVNNNGGGIFSLLPQAQS 489 (566)
T ss_pred hHHHHhhhhhhc---------------CCceEEEEechhhh--hccchHhhcCCCCCCeEEEEEeCCCceeeeeccCCCC
Confidence 467789999876 45699999999998 44557777888888989999999998875433211
Q ss_pred -----------ChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeecccc
Q 006816 186 -----------LSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRER 239 (630)
Q Consensus 186 -----------~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~~ 239 (630)
..-|++..++.||.++..+ + ++.++.++++.+-. ..+-++||++|-|..
T Consensus 490 ~~~fe~~F~tPh~ldF~~la~~y~l~y~~~---~-s~~~l~~~~~~~~~-~~g~~viEvkt~r~~ 549 (566)
T COG1165 490 EPVFERLFGTPHGLDFAHLAATYGLEYHRP---Q-SWDELGEALDQAWR-RSGTTVIEVKTDRSD 549 (566)
T ss_pred cchHHHhcCCCCCCCHHHHHHHhCcccccc---C-cHHHHHHHHhhhcc-CCCcEEEEEecChhH
Confidence 1357899999999999998 5 89999999998875 577999999997654
No 167
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=97.57 E-value=0.0053 Score=65.74 Aligned_cols=182 Identities=17% Similarity=0.177 Sum_probs=124.5
Q ss_pred cchHHHHHHHHHHHhcCCCCceEeeehHHHHHhhHHHHHHhcccCCCeEEEEecCCCCCCCCCCCCCChhhhHHhhcCCC
Q 006816 372 VREHAMAGISNGVALHGGGLIPFAATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAVPR 451 (630)
Q Consensus 372 IaE~~~vg~a~GlA~~G~~~~pv~~~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~~g~~G~tHq~~~d~a~l~~iP~ 451 (630)
=+|.+.++++.|.+..| -|.+..|-+.=+..+.+.|-.++.+.+|++++. ..+.+....=||+....|+...|.. +
T Consensus 54 EsE~~a~s~v~GA~~aG--ar~~TaTSg~Gl~Lm~E~l~~a~~~~~P~Vi~~-~~R~~ps~g~p~~~dq~D~~~~r~~-g 129 (365)
T COG0674 54 ESEIGAISAVIGASYAG--ARAFTATSGQGLLLMAEALGLAAGTETPLVIVV-AQRPLPSTGLPIKGDQSDLMAARDT-G 129 (365)
T ss_pred ccHHHHHHHHHHHHhhC--cceEeecCCccHHHHHHHHHHHHhccCCeEEEE-eccCcCCCcccccccHHHHHHHHcc-C
Confidence 36899999999999999 999998877767788899999999999998875 4555445434599889999888877 8
Q ss_pred cEEEecCChHHHHHHHHHHHHc---CCCcEEEEEc--------------CCCcc----ccc--C--CCcccccccc----
Q 006816 452 LLAFRPADGNETAGSYRVAIAN---RDVPSVIALS--------------RQKIA----ANL--E--GTSADEVERG---- 502 (630)
Q Consensus 452 l~v~~P~d~~e~~~~l~~a~~~---~~~P~~ir~~--------------r~~~~----~~~--~--~~~~~~~~~G---- 502 (630)
+.+++=+|.+|+..+-..|++- ..-|+++.+. +++.. +.. + ......+..|
T Consensus 130 ~~~~~~~s~qEa~d~t~~Af~iAe~~~~Pvi~~~D~~~~~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 209 (365)
T COG0674 130 FPILVSASVQEAFDLTLLAFNIAEKVLTPVIVLLDGFLASHEYEKIELLEQDLPDEEIPDYEPYTALDPSPPVLPGTEAV 209 (365)
T ss_pred ceEEeeccHHHHHHHHHHHHHHHHHhcCCEEEeeccchhcCceeeeecCccccccccccccCcccccCCCCCCcCCCCCC
Confidence 7777777888887765555432 1457776421 11000 000 0 0000000111
Q ss_pred -----------------------------------cE---EEecCCCCCCCcEEEEEeCchHHHHHHHHHH-HHhcCCce
Q 006816 503 -----------------------------------GY---IVSDNSSENKPEIILIGTGTELSLCEGTAKT-LRQEGRRV 543 (630)
Q Consensus 503 -----------------------------------~~---~~~~~~~~G~~dvtiva~G~~v~~a~~aa~~-L~~~gi~~ 543 (630)
.| .+.. .+. .+++||+||+....+.+++.. ++++|+++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~v~~r~~~k~~~~~~~~~~~~~~~g--~~D-Ae~viV~~Gss~~~~~~a~~~~~~~~g~kv 286 (365)
T COG0674 210 PDAYVTGFEHDNAGYPAEDDVIKRALRKINELTGREYEPFLYYG--YED-AEIVIVAMGSSKGSTAEAVVDLLRDKGEKV 286 (365)
T ss_pred CceEEeeeeccccccccchHHHHHHHHHHHHHhcCCCccceeec--CCC-cCEEEEEeccchHhHHHHHHHHHHhcCceE
Confidence 00 1111 112 688999999888777777665 45889999
Q ss_pred EEEEcccccccCcccHH
Q 006816 544 RVVSLVCWRLFDRQPAE 560 (630)
Q Consensus 544 ~Vi~~~~i~pld~~~~~ 560 (630)
.++.++.+.||+.+.+.
T Consensus 287 g~l~vr~~rPFp~~~i~ 303 (365)
T COG0674 287 GLLKVRTLRPFPAEEIR 303 (365)
T ss_pred EEEEEEEeCCCCHHHHH
Confidence 99999999999998664
No 168
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=97.14 E-value=0.27 Score=52.65 Aligned_cols=284 Identities=15% Similarity=0.079 Sum_probs=144.0
Q ss_pred cchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHH---HHhHHcCCCcEEEEEECCC-Cccc-
Q 006816 105 LGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAA---ALAAHWKLNKLTLIYDDNH-NTID- 179 (630)
Q Consensus 105 lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal---~~a~~~~L~~li~i~~~N~-~~i~- 179 (630)
=|.++++|.|+.++. .++-++++---++. -....| .....+++| +++|+-..+ .+..
T Consensus 35 E~~av~iaaG~~lat---------------G~~~~v~mQnSGlG--n~vN~l~SL~~~~~y~iP-~l~~i~~RG~~g~~d 96 (361)
T TIGR03297 35 EGAAVGLAAGAYLAT---------------GKRAAVYMQNSGLG--NAVNPLTSLADTEVYDIP-LLLIVGWRGEPGVHD 96 (361)
T ss_pred chHHHHHHHHHHHhc---------------CCccEEEEecCchh--hhhhHHHhhccccccCcC-eeEEEecCCCCCCCC
Confidence 478999999999984 23444444333332 233344 335678999 445554444 3322
Q ss_pred ccccccChhcHHHHHHhCCCeEEEEeCCCC--CHHHHHHHHHHHHhcCCCcEEEEEeecccccCcccCCCCCCChHHHHH
Q 006816 180 GPTSLVLSEDISARFKSLGWNTIMVENIHD--NLSSFKEALMAAANETKKPTFIRVKKMRERVNWVDRDQFHVIPMVYRE 257 (630)
Q Consensus 180 ~~~~~~~~~~~~~~~~a~G~~~~~v~dG~~--d~~~l~~al~~a~~~~~~P~~i~~~t~k~~~g~~~~~~~~~~~~~~~~ 257 (630)
-+.+.....-....++++|+++..+ +-+. +.+.+.++++.+.+ .++|+.+.++- + -|++...
T Consensus 97 epqh~~~G~~t~~lL~~~~i~~~~~-~~~~~~~~~~~~~a~~~~~~-~~~p~a~l~~~--~--~~~~~~~---------- 160 (361)
T TIGR03297 97 EPQHVKQGRITLSLLDALEIPWEVL-STDNDEALAQIERALAHALA-TSRPYALVVRK--G--TFASYKL---------- 160 (361)
T ss_pred CchhhHHhHHHHHHHHHcCCCEEEC-CCChHHHHHHHHHHHHHHHH-HCCCEEEEEcc--c--ccccccc----------
Confidence 2222233455678899999999987 4210 23456667777776 68999887631 1 1111000
Q ss_pred HHHhhhhchhHHHHHHHHHHhhhhcCCchhHhHHHHhcCCCCCCccccCCCCCCCCCCchHHHHHHHHHHHHHHhCCCeE
Q 006816 258 MQIQTDHGERLEKEWCSKVYNYRSKYPHEGAELDLLLNGGLLPGWENALPKWSTSDPLDATRGYSEKCLNQLAKVLPGLI 337 (630)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~r~a~~~~L~~l~~~~~~iv 337 (630)
.. . +. +.+. ... +|...-+.+.+.+.. ..++
T Consensus 161 ----------------------~~--~--------------~~------~~~~---~~~-~r~~ai~~i~~~l~~-~~iV 191 (361)
T TIGR03297 161 ----------------------KG--E--------------PA------NPLP---TLM-TREEAIAAILDHLPD-NTVI 191 (361)
T ss_pred ----------------------cc--C--------------CC------CCCc---CCC-CHHHHHHHHHHhCCC-CCEE
Confidence 00 0 00 0000 001 121222333333321 2344
Q ss_pred EEecCCCCCcccccccc-cCcCCCCCCCCCccccccchHHHHHHHHHHHhcCCCCceEeee--hHHHHHhhHHHHHHhcc
Q 006816 338 GGSADLASSNKAYLLGY-HDFSQPDSPWGRNIRYGVREHAMAGISNGVALHGGGLIPFAAT--FLIFSDYMKNSIRLSAL 414 (630)
Q Consensus 338 ~~~aD~~~s~~~~~~~~-~~f~~~~~~p~R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~~--~~~F~~~a~dqi~~~a~ 414 (630)
+ .|.+......+... ... ..+|.+|+.+|= =.+..++|.|+|+.- .-++++.+ -..|+..+- .+-..+.
T Consensus 192 V--~~~G~~s~el~~~~~~~~---~~~~~~f~~~Gs-MG~a~p~AlG~ala~-p~r~Vv~i~GDGsflm~~~-eL~t~~~ 263 (361)
T TIGR03297 192 V--STTGKTSRELYELRDRIG---QGHARDFLTVGS-MGHASQIALGLALAR-PDQRVVCLDGDGAALMHMG-GLATIGT 263 (361)
T ss_pred E--ECCCCCcHHHHHhhcccc---cCCCCceEeech-hhhHHHHHHHHHHHC-CCCCEEEEEChHHHHHHHH-HHHHHHH
Confidence 4 34433221111100 001 123677776422 123345778887764 24556654 566664432 2333344
Q ss_pred cC-CCeEEEEecCCCCCCCCC--CCCCChhhh-HHhhcCCCc-EEEecCChHHHHHHHHHHHHcCCCcEEEEE
Q 006816 415 SH-AGVIYILTHDSIGLGEDG--PTHQPVEQL-AGLRAVPRL-LAFRPADGNETAGSYRVAIANRDVPSVIAL 482 (630)
Q Consensus 415 ~~-~pv~~v~~~~g~~~g~~G--~tHq~~~d~-a~l~~iP~l-~v~~P~d~~e~~~~l~~a~~~~~~P~~ir~ 482 (630)
.+ .|++++.-..+. ++..| +++....|. .+.++. |. ..+...+..|+..+++.+.+. ++|++|.+
T Consensus 264 ~~~~nli~VVlNNg~-~~~~g~q~~~~~~~d~~~iA~a~-G~~~~~~v~~~~eL~~al~~a~~~-~gp~lIeV 333 (361)
T TIGR03297 264 QGPANLIHVLFNNGA-HDSVGGQPTVSQHLDFAQIAKAC-GYAKVYEVSTLEELETALTAASSA-NGPRLIEV 333 (361)
T ss_pred hCCCCeEEEEEcCcc-ccccCCcCCCCCCCCHHHHHHHC-CCceEEEeCCHHHHHHHHHHHHhC-CCcEEEEE
Confidence 45 477666544443 22222 233222333 344444 54 567889999999999999986 89999865
No 169
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=97.06 E-value=0.0014 Score=65.60 Aligned_cols=109 Identities=16% Similarity=0.164 Sum_probs=76.0
Q ss_pred ccchHHHHHHHHHHHhcCCCCceEeeehHHHHHhhHHHHHHhcccCCCeEEEEecCCCCCCCCCCCCCChhhhHHhhcCC
Q 006816 371 GVREHAMAGISNGVALHGGGLIPFAATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAVP 450 (630)
Q Consensus 371 gIaE~~~vg~a~GlA~~G~~~~pv~~~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~~g~~G~tHq~~~d~a~l~~iP 450 (630)
.-.|..+++++.|.|+.| .|.++.+=+.=+..+.|.|..++..++|++++. ..+.+.+..+++|+...|+-..+ --
T Consensus 42 ~E~E~~A~~~~~GAs~aG--~ra~t~ts~~Gl~lm~e~l~~a~~~~~P~V~~~-~~R~g~~~g~~~~~~q~D~~~~~-d~ 117 (230)
T PF01855_consen 42 AESEHAAMEAAIGASAAG--ARAMTATSGPGLNLMAEPLYWAAGTELPIVIVV-VQRAGPSPGLSTQPEQDDLMAAR-DS 117 (230)
T ss_dssp -SSHHHHHHHHHHHHHTT----EEEEEECCHHHHHCCCHHHHHHTT--EEEEE-EEB---SSSB--SB-SHHHHHTT-TS
T ss_pred ecchHHHHHHHHHHHhcC--CceEEeecCCcccccHhHHHHHHHcCCCEEEEE-EECCCCCCCCcCcCChhHHHHHH-hc
Confidence 367999999999999999 999988755555677788888889999988875 45555555578998899987777 45
Q ss_pred CcEEEecCChHHHHHHHHHHHHc---CCCcEEEEEc
Q 006816 451 RLLAFRPADGNETAGSYRVAIAN---RDVPSVIALS 483 (630)
Q Consensus 451 ~l~v~~P~d~~e~~~~l~~a~~~---~~~P~~ir~~ 483 (630)
++.|+.|+|.+|+..+...|++- ...|++++..
T Consensus 118 ~~~vl~p~~~QEa~d~~~~A~~lAe~~~~PViv~~D 153 (230)
T PF01855_consen 118 GWIVLAPSSPQEAYDMTLIAFNLAEKYQTPVIVLFD 153 (230)
T ss_dssp S-EEEE--SHHHHHHHHHHHHHHHHHHTSEEEEEEE
T ss_pred CeEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEec
Confidence 68899999999999988877542 3579998764
No 170
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=96.85 E-value=0.01 Score=55.39 Aligned_cols=116 Identities=21% Similarity=0.193 Sum_probs=83.0
Q ss_pred CCccccccchHHHHHHHHHHHhcCCCCceEee-ehHHHHHhhHHHHHHhcccCCCeEEEEecCCCCCCCCCCCCCChhhh
Q 006816 365 GRNIRYGVREHAMAGISNGVALHGGGLIPFAA-TFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQL 443 (630)
Q Consensus 365 ~R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~-~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~~g~~G~tHq~~~d~ 443 (630)
-|++.+ ..|..++.+|.|+++.+ +..+++. +..+=+..+.+.|.++...+.|++++. .........-.+||...+.
T Consensus 35 ~~~i~~-~~E~~A~~~A~g~~~~~-~~~~v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~-~~~~~~~~~~~~~q~~d~~ 111 (155)
T cd07035 35 IRYILV-RHEQGAVGMADGYARAT-GKPGVVLVTSGPGLTNAVTGLANAYLDSIPLLVIT-GQRPTAGEGRGAFQEIDQV 111 (155)
T ss_pred CEEEEe-CCHHHHHHHHHHHHHHH-CCCEEEEEcCCCcHHHHHHHHHHHHhhCCCEEEEe-CCCccccccCCcccccCHH
Confidence 455555 69999999999999987 3444444 344445567788888877899999986 3333233333447777777
Q ss_pred HHhhcCCCcEEEecCChHHHHHHHHHHHHc----CCCcEEEEEcC
Q 006816 444 AGLRAVPRLLAFRPADGNETAGSYRVAIAN----RDVPSVIALSR 484 (630)
Q Consensus 444 a~l~~iP~l~v~~P~d~~e~~~~l~~a~~~----~~~P~~ir~~r 484 (630)
.+++.+-.. .+...+++++...+..|++. .++|++|.+|+
T Consensus 112 ~~~~~~~~~-~~~i~~~~~~~~~i~~A~~~a~~~~~gPv~l~ip~ 155 (155)
T cd07035 112 ALFRPITKW-AYRVTSPEEIPEALRRAFRIALSGRPGPVALDLPK 155 (155)
T ss_pred HHHHHHhce-EEEcCCHHHHHHHHHHHHHHhcCCCCCcEEEEecC
Confidence 888888654 67777888998888888765 25799998764
No 171
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=96.82 E-value=0.0041 Score=74.80 Aligned_cols=117 Identities=15% Similarity=0.116 Sum_probs=84.3
Q ss_pred cccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCcccc
Q 006816 101 TTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDG 180 (630)
Q Consensus 101 ~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~ 180 (630)
+.-+||.+.+.++|++.+. .+++||+++|||.|.. .-.-++..|+..+.+.++.|++|.--++.+
T Consensus 479 ~~~~MG~eg~~~~G~a~f~--------------~~~hv~a~iGDgTffH-SG~~al~~AV~~~~nit~~IL~N~~vAMTG 543 (1165)
T PRK09193 479 TFTQMGGEGVPWIGQAPFT--------------DEKHVFQNLGDGTYFH-SGLLAIRAAVAAGVNITYKILYNDAVAMTG 543 (1165)
T ss_pred eeeccCCcchhhceecccc--------------CCCcEEEEeccccchh-cCHHHHHHHHhcCCCeEEEEEeCCcccccC
Confidence 4457888888888887764 4578999999999974 224578999999988777777777667766
Q ss_pred cccc---cChhcHHHHHHhCCCeEEEEe--CCCCCHHHH--------------HHHHHHHH-hcCCCcEEEEEe
Q 006816 181 PTSL---VLSEDISARFKSLGWNTIMVE--NIHDNLSSF--------------KEALMAAA-NETKKPTFIRVK 234 (630)
Q Consensus 181 ~~~~---~~~~~~~~~~~a~G~~~~~v~--dG~~d~~~l--------------~~al~~a~-~~~~~P~~i~~~ 234 (630)
.+.. ....++.+.+++.|.+.+.++ |-. ++... .++++++. + .+++++|+.+
T Consensus 544 gQ~~~g~~~~~~i~~~~~a~GV~~v~vv~ddp~-~~~~~~~~~~~v~~~~R~~l~~vq~~lr~-~~GvsViI~~ 615 (1165)
T PRK09193 544 GQPVDGGLSVPQITRQLAAEGVKRIVVVTDEPE-KYDGVARLAPGVTVHHRDELDAVQRELRE-IPGVTVLIYD 615 (1165)
T ss_pred CCCCCCCcchhhHHHHHHhCCCCEEEEeCCChh-hhhhccccCcCcccccHHHHHHHHHHHhc-CCCcEEEEEc
Confidence 5542 234678899999999888886 433 43333 34455554 4 6789988877
No 172
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=96.72 E-value=0.0049 Score=74.36 Aligned_cols=114 Identities=18% Similarity=0.131 Sum_probs=78.7
Q ss_pred cccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCc-hhHHHHHHHhHHcCCCcEEEEEECCCCccccc
Q 006816 103 GPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAME-GISHEAAALAAHWKLNKLTLIYDDNHNTIDGP 181 (630)
Q Consensus 103 G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~e-G~~~eal~~a~~~~L~~li~i~~~N~~~i~~~ 181 (630)
-+||.+.+.++|++.+. .+++||+++|||.|.. |+ -++..|+..+.+.+++|++|.--++.+.
T Consensus 468 ~~MG~~g~~~~G~a~~~--------------~~~~v~a~iGDgTf~HSG~--~al~~AV~~~~nit~~IL~N~~tAMTGg 531 (1159)
T PRK13030 468 TQMGGEGVDWIGHAPFT--------------ETKHVFQNLGDGTYFHSGS--LAIRQAVAAGANITYKILYNDAVAMTGG 531 (1159)
T ss_pred eccCccchhhceecccc--------------CCCCEEEEeccchhhhcCH--HHHHHHHhcCCCeEEEEEeCCcccccCC
Confidence 46777888888888765 4578999999999975 43 3899999999886777777766677666
Q ss_pred ccccCh---hcHHHHHHhCCCeEEEEe--CCCCC-----HH--------HHHHHHHHHH-hcCCCcEEEEEe
Q 006816 182 TSLVLS---EDISARFKSLGWNTIMVE--NIHDN-----LS--------SFKEALMAAA-NETKKPTFIRVK 234 (630)
Q Consensus 182 ~~~~~~---~~~~~~~~a~G~~~~~v~--dG~~d-----~~--------~l~~al~~a~-~~~~~P~~i~~~ 234 (630)
+..-.. +.+....++.|.+.+.++ |=. + +. +..++++++. + .++|++|+.+
T Consensus 532 Qp~~g~i~v~~i~~~~~a~Gv~~v~vvsddp~-~~~~~~~~~~~~v~~r~~l~~vq~~l~~-~~GvsViI~~ 601 (1159)
T PRK13030 532 QPVDGSISVPQIARQVEAEGVSRIVVVSDEPE-KYRGHHLPAGVTVHHRDELDAVQRELRE-TPGVTVLIYD 601 (1159)
T ss_pred CCCCCCCCHHHHHHHHHhCCCcEEEEecCChh-hccccccCCCcccccHHHHHHHHHHHhc-CCCcEEEEEc
Confidence 543222 344447889999888876 311 1 22 3334455554 4 6789998877
No 173
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=96.66 E-value=0.018 Score=54.03 Aligned_cols=114 Identities=15% Similarity=0.083 Sum_probs=79.3
Q ss_pred CCCccccccchHHHHHHHHHHHhcCCCCceEeeehHHHHHhhHHHHHHhcccCCCeEEEEecCCCCCCCC--CCCCCChh
Q 006816 364 WGRNIRYGVREHAMAGISNGVALHGGGLIPFAATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGED--GPTHQPVE 441 (630)
Q Consensus 364 p~R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~~g~~--G~tHq~~~ 441 (630)
.-|++.+- .|+..+.+|.|.++.| .+.++.+-.+=+..+.+.|..+...+.|++++....+. .+.+ ...||.+.
T Consensus 41 ~i~~i~~~-~E~~A~~~A~g~~r~~--~~v~~~~~gpG~~n~~~~l~~a~~~~~P~v~i~g~~~~-~~~~~~~~~~~~~~ 116 (160)
T cd07034 41 GGVVVQAE-SEHAAAEAAIGASAAG--ARAMTATSGPGLNLMAEALYLAAGAELPLVIVVAQRPG-PSTGLPKPDQSDLM 116 (160)
T ss_pred CcEEEEeC-CHHHHHHHHHHHHhhC--CcEEEeeCcchHHHHHHHHHHHHhCCCCEEEEEeeCCC-CCCCCCCcCcHHHH
Confidence 35777776 9999999999999988 56555566777778888888876678999998633222 2221 12344344
Q ss_pred hhHHhhcCCCcEEEecCChHHHHHHHHHHHHc---CCCcEEEEEc
Q 006816 442 QLAGLRAVPRLLAFRPADGNETAGSYRVAIAN---RDVPSVIALS 483 (630)
Q Consensus 442 d~a~l~~iP~l~v~~P~d~~e~~~~l~~a~~~---~~~P~~ir~~ 483 (630)
...+++. -.-++.|.+++|+..+++.|++. .++|++|++.
T Consensus 117 ~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~a~~~~~Pv~l~~~ 159 (160)
T cd07034 117 AARYGGH--PWPVLAPSSVQEAFDLALEAFELAEKYRLPVIVLSD 159 (160)
T ss_pred HHHhCCC--CEEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 4444433 56778899999998888877643 2479999863
No 174
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=96.55 E-value=0.02 Score=60.48 Aligned_cols=104 Identities=16% Similarity=0.035 Sum_probs=74.2
Q ss_pred CceEEEEEccccc-CchhHHHHHHHhHHcCCCcEEEEEECCCCcccccccc-----------------cChhcHHHHHHh
Q 006816 135 DHRTYCIMSDGCA-MEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGPTSL-----------------VLSEDISARFKS 196 (630)
Q Consensus 135 ~~~v~~~~GDG~~-~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~~~~-----------------~~~~~~~~~~~a 196 (630)
+..||++.|||.. . .-...+..+...+.+..++++||..|+..+-+.. ...-|+..++.+
T Consensus 151 ~~~v~v~gGDG~~yd--IG~~~l~ha~~r~~ni~~iv~DNe~Y~nTGgQ~S~tTp~Ga~t~tsp~Gk~~~kkd~~~ia~a 228 (365)
T cd03377 151 KKSVWIIGGDGWAYD--IGYGGLDHVLASGENVNILVLDTEVYSNTGGQASKATPLGAVAKFAAAGKRTGKKDLGMIAMS 228 (365)
T ss_pred ccceEEEecchhhhc--cchhhHHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCcCccCCCCCCCCCcCHHHHHHH
Confidence 4689999999955 5 4455888888888776677777777765432110 013578889999
Q ss_pred CCCeEEE-EeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeecccccCc
Q 006816 197 LGWNTIM-VENIHDNLSSFKEALMAAANETKKPTFIRVKKMRERVNW 242 (630)
Q Consensus 197 ~G~~~~~-v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~~~g~ 242 (630)
+|..++- +-=|. ++.++.+++++|.+ .+||.+|++.+.--.+|+
T Consensus 229 ~g~~YVA~~s~~~-~~~~~~~~i~eA~~-~~Gps~I~v~sPC~~~G~ 273 (365)
T cd03377 229 YGNVYVAQIALGA-NDNQTLKAFREAEA-YDGPSLIIAYSPCIAHGI 273 (365)
T ss_pred cCCCEEEEEeccc-CHHHHHHHHHHHhc-CCCCEEEEEEccCcccCc
Confidence 9987653 31234 89999999999998 799999999865433355
No 175
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=96.43 E-value=0.027 Score=53.73 Aligned_cols=118 Identities=15% Similarity=0.097 Sum_probs=80.6
Q ss_pred CCccccccchHHHHHHHHHHHhcCCCCceEe-ee-hHHHHHhhHHHHHHhcccCCCeEEEEecCCCCCCCCCCCCCChhh
Q 006816 365 GRNIRYGVREHAMAGISNGVALHGGGLIPFA-AT-FLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQ 442 (630)
Q Consensus 365 ~R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~-~~-~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~~g~~G~tHq~~~d 442 (630)
-|++.+ -.|++++.+|.|+++.+ -+|-+ .+ ...=+.-+...|.++...+.|++++....+...-..|..|+..+.
T Consensus 40 i~~i~~-~~E~~A~~~A~g~ar~~--g~~~v~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~~d~ 116 (172)
T PF02776_consen 40 IRFIPV-RHEQGAAFMADGYARAT--GRPGVVIVTSGPGATNALTGLANAYADRIPVLVITGQRPSAGEGRGAFQQEIDQ 116 (172)
T ss_dssp SEEEE--SSHHHHHHHHHHHHHHH--SSEEEEEEETTHHHHTTHHHHHHHHHTT-EEEEEEEESSGGGTTTTSTTSSTHH
T ss_pred eeeecc-cCcchhHHHHHHHHHhh--ccceEEEeecccchHHHHHHHhhcccceeeEEEEecccchhhhcccccccchhh
Confidence 466664 88999999999999876 44444 43 323234566667666677999999864444332225777777888
Q ss_pred hHHhhcCCCcEEEecCChHHHHHHHHHHHH----cCCCcEEEEEcCCC
Q 006816 443 LAGLRAVPRLLAFRPADGNETAGSYRVAIA----NRDVPSVIALSRQK 486 (630)
Q Consensus 443 ~a~l~~iP~l~v~~P~d~~e~~~~l~~a~~----~~~~P~~ir~~r~~ 486 (630)
..+++.+-.. .+.+.++.++...++.|++ ...+|++|-+|+.-
T Consensus 117 ~~~~~~~~k~-~~~v~~~~~~~~~~~~A~~~a~~~~~gPv~l~ip~dv 163 (172)
T PF02776_consen 117 QSLFRPVTKW-SYRVTSPDDLPEALDRAFRAATSGRPGPVYLEIPQDV 163 (172)
T ss_dssp HHHHGGGSSE-EEEECSGGGHHHHHHHHHHHHHHCSTSEEEEEEEHHH
T ss_pred cchhccccch-hcccCCHHHHHHHHHHHHHHhccCCCccEEEEcChhH
Confidence 8899988743 6666777777776666654 35899999998753
No 176
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=96.34 E-value=0.014 Score=70.33 Aligned_cols=115 Identities=12% Similarity=0.068 Sum_probs=78.1
Q ss_pred cccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCcccccc
Q 006816 103 GPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGPT 182 (630)
Q Consensus 103 G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~~ 182 (630)
-.||.+...++|++.+. .+++||+++|||.|.. .-.-++..|+..+.+.++.|++|.--++.+.+
T Consensus 495 ~~MGgeg~~~~G~a~f~--------------~~~hv~aniGDgTffH-SG~~alr~AV~~~~nit~kIL~N~avAMTGgQ 559 (1186)
T PRK13029 495 SQMGGEGVAWIGQMPFS--------------RRRHVFQNLGDGTYFH-SGLLAIRQAIAAGVNITYKILYNDAVAMTGGQ 559 (1186)
T ss_pred eccCcchhhheeecccC--------------CCCCEEEEeccccchh-cCHHHHHHHHhcCCCEEEEEEeCcchhccCCC
Confidence 45677777777777654 4577999999999974 22447899999998877777777766776655
Q ss_pred ccc---ChhcHHHHHHhCCCeEEEEeC--CCCCHH--------------HHHHHHHHHH-hcCCCcEEEEEe
Q 006816 183 SLV---LSEDISARFKSLGWNTIMVEN--IHDNLS--------------SFKEALMAAA-NETKKPTFIRVK 234 (630)
Q Consensus 183 ~~~---~~~~~~~~~~a~G~~~~~v~d--G~~d~~--------------~l~~al~~a~-~~~~~P~~i~~~ 234 (630)
..- ..+.+....++.|.+-+.++| =. ++. +..+++++.. + .+++++|+.+
T Consensus 560 p~~G~~~v~~i~~~~~a~GV~~v~vv~d~p~-~~~~~~~~~~gv~~~~R~~l~~vq~~lr~-~~GvsViI~~ 629 (1186)
T PRK13029 560 PVDGVLTVPQIARQVHAEGVRRIVVVTDEPG-KYRGVARLPAGVTVHHRDELDAVQRELRE-VPGVSVLIYD 629 (1186)
T ss_pred CCCCcCCHHHHHHHHHhCCccEEEEeCCCcc-ccccccccCCccccccHHHHHHHHHHHhc-CCCcEEEEEc
Confidence 432 234455588999998888766 11 222 2234444444 4 6789988877
No 177
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=95.90 E-value=0.15 Score=62.05 Aligned_cols=201 Identities=10% Similarity=-0.029 Sum_probs=121.5
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCce---------EeeehHHHHHhhHHHHHHhccc----CCCeEEEEecCCCCCCC
Q 006816 366 RNIRYGVREHAMAGISNGVALHGGGLIP---------FAATFLIFSDYMKNSIRLSALS----HAGVIYILTHDSIGLGE 432 (630)
Q Consensus 366 R~~~~gIaE~~~vg~a~GlA~~G~~~~p---------v~~~~~~F~~~a~dqi~~~a~~----~~pv~~v~~~~g~~~g~ 432 (630)
-+|.-++.|.-++.++.|-+..| ++| +++.=..=++++-|.++.+.+. +--|+++...|-...
T Consensus 75 i~~e~~~NEkvA~e~a~Gaq~~~--~~~~~~~~Gv~~l~~~K~~GvnvaaD~l~~~n~~G~~~~GG~v~v~gDDpg~~-- 150 (1159)
T PRK13030 75 IRFLPGINEELAATAVLGTQQVE--ADPERTVDGVFAMWYGKGPGVDRAGDALKHGNAYGSSPHGGVLVVAGDDHGCV-- 150 (1159)
T ss_pred eEEeecCCHHHHHHHHHHhcccc--ccCCccccceEEEEecCcCCcccchhHHHHHHhhcCCCCCcEEEEEecCCCCc--
Confidence 68899999999999999999555 444 3333223347899999876544 334555542332111
Q ss_pred CCCCCCChhhhHHhhcCCCcEEEecCChHHHHHHHHHHHHc---CCCcEEEEEc------CCCcc--c-----ccCCCcc
Q 006816 433 DGPTHQPVEQLAGLRAVPRLLAFRPADGNETAGSYRVAIAN---RDVPSVIALS------RQKIA--A-----NLEGTSA 496 (630)
Q Consensus 433 ~G~tHq~~~d~a~l~~iP~l~v~~P~d~~e~~~~l~~a~~~---~~~P~~ir~~------r~~~~--~-----~~~~~~~ 496 (630)
. | |--.|--++...-+|-|+.|+|++|+..+.+.+++- .+-||.+|.. ++.+. + ..+. .
T Consensus 151 -S-S-q~eqdSr~~~~~a~iPvl~Ps~~qE~~d~~~~a~~lSr~~~~pV~lr~~t~v~h~~~~V~~~~~~~~~~~~~--~ 225 (1159)
T PRK13030 151 -S-S-SMPHQSDFALIAWHMPVLNPANVQEYLDFGLYGWALSRYSGAWVGFKAISETVESGSTVDLDPDRTRWPAPE--D 225 (1159)
T ss_pred -c-C-cCHHHHHHHHHHcCCceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeeeeeEEcCCCcccCCCcc--c
Confidence 1 1 111233334444456699999999999999987643 4679999753 11110 0 0010 0
Q ss_pred cccccc----cEE-----------------------------EecCCCCCCCcEEEEEeCchHHHHHHHHHHHHhcC---
Q 006816 497 DEVERG----GYI-----------------------------VSDNSSENKPEIILIGTGTELSLCEGTAKTLRQEG--- 540 (630)
Q Consensus 497 ~~~~~G----~~~-----------------------------~~~~~~~G~~dvtiva~G~~v~~a~~aa~~L~~~g--- 540 (630)
+..+.| .|. +.. .....++-||++|.....+.||.+.|...+
T Consensus 226 f~~~~~~~~~r~~~~p~~~~~~~~~~rl~~~~~~~~~~~ln~~~~--~~~~~~iGIItsG~ay~~v~EAL~~Lgl~~~~~ 303 (1159)
T PRK13030 226 FTPPAGGLHNRWPDLPSLAIEARLAAKLPAVRAFARANSIDRWVA--PSPDARVGIVTCGKAHLDLMEALRRLGLDDADL 303 (1159)
T ss_pred cCCCcccccccCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCceec--cCCCCCEEEEEeCccHHHHHHHHHHcCCCcccc
Confidence 000010 010 000 001157999999999999999988874333
Q ss_pred --CceEEEEcccccccCcccHHHHhccCCCCCeeEEEEecCCc
Q 006816 541 --RRVRVVSLVCWRLFDRQPAEYKEKVLPSRVVKRVSVEAGSS 581 (630)
Q Consensus 541 --i~~~Vi~~~~i~pld~~~~~~~~~v~~~~~~~~v~vEe~~~ 581 (630)
+.++|+-+-...||+.+.+. ...+....+ +||||...
T Consensus 304 ~~lgirilKvgm~~PL~~~~i~---~F~~g~d~V-lVVEE~~p 342 (1159)
T PRK13030 304 RAAGIRIYKVGLSWPLEPTRLR---EFADGLEEI-LVIEEKRP 342 (1159)
T ss_pred cccCccEEEeCCccCCCHHHHH---HHHhcCCEE-EEEeCCch
Confidence 24677777777799998665 233333355 99999865
No 178
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=95.63 E-value=0.063 Score=50.45 Aligned_cols=109 Identities=17% Similarity=0.084 Sum_probs=65.8
Q ss_pred ccchHHHHHHHHHHHhcCCCCceEeeehHHHHHhhHHHHHHhc-ccCCCeEEEEecCCCCCCCCCCCC--CChhhhHHhh
Q 006816 371 GVREHAMAGISNGVALHGGGLIPFAATFLIFSDYMKNSIRLSA-LSHAGVIYILTHDSIGLGEDGPTH--QPVEQLAGLR 447 (630)
Q Consensus 371 gIaE~~~vg~a~GlA~~G~~~~pv~~~~~~F~~~a~dqi~~~a-~~~~pv~~v~~~~g~~~g~~G~tH--q~~~d~a~l~ 447 (630)
.-+|...+++|+|..+.| .+|.+++-.+=+..+.+.|..+. ..+.||+++.+.-|- .|++-+.| ++......|.
T Consensus 40 ~~~ee~aa~~aAg~~~~~--~~~~v~~~~sG~gn~~~~l~~a~~~~~~Pvl~i~g~rg~-~~~~~~~q~~~g~~~~~~l~ 116 (157)
T TIGR03845 40 LTREEEGVGICAGAYLAG--KKPAILMQSSGLGNSINALASLNKTYGIPLPILASWRGV-YKEKIPAQIPMGRATPKLLD 116 (157)
T ss_pred cCChHHHHHHHHHHHHhc--CCcEEEEeCCcHHHHHHHHHHHHHcCCCCEEEEEeccCC-CCCCCccccchhhhhHHHHH
Confidence 468999999999999888 77777643222445666776666 779999998633322 33332222 2222222222
Q ss_pred cCCCcEEEecCChHHHHHHHHHHH----HcCCCcEEEEEcCC
Q 006816 448 AVPRLLAFRPADGNETAGSYRVAI----ANRDVPSVIALSRQ 485 (630)
Q Consensus 448 ~iP~l~v~~P~d~~e~~~~l~~a~----~~~~~P~~ir~~r~ 485 (630)
.+ ++......+++++ ..++.|+ .. ++|++|.+.+.
T Consensus 117 ~~-~i~~~~i~~~e~~-~~i~~A~~~a~~~-~gPv~il~~~~ 155 (157)
T TIGR03845 117 TL-GIPYTIPREPEEA-KLIEKAISDAYEN-SRPVAALLDPK 155 (157)
T ss_pred Hc-CCCeEEeCCHHHH-HHHHHHHHHHHhC-CCCEEEEEeCC
Confidence 22 2234555556666 6555554 54 59999998764
No 179
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=95.44 E-value=0.27 Score=59.64 Aligned_cols=197 Identities=15% Similarity=0.079 Sum_probs=121.2
Q ss_pred CccccccchHHHHHHH---------HHHHhcCCCCceEeeehHHHHHhhHHHHHHhccc----CCCeEEEEecCCCCCCC
Q 006816 366 RNIRYGVREHAMAGIS---------NGVALHGGGLIPFAATFLIFSDYMKNSIRLSALS----HAGVIYILTHDSIGLGE 432 (630)
Q Consensus 366 R~~~~gIaE~~~vg~a---------~GlA~~G~~~~pv~~~~~~F~~~a~dqi~~~a~~----~~pv~~v~~~~g~~~g~ 432 (630)
=+|.-++.|.-.+.++ .|-+..| .+.+++.=..=++++-|.++.+.+. +--|+++...|-...
T Consensus 83 i~fe~~~NEkvAae~~~GsQ~~~~~~~a~~~G--v~~l~y~K~pGvn~aaD~l~~~n~~G~~~~GGvv~v~gDDpg~~-- 158 (1165)
T PRK09193 83 IVFQPGLNEDLAATAVWGSQQVNLFPGAKYDG--VFGMWYGKGPGVDRSGDVFRHANAAGTSPHGGVLALAGDDHAAK-- 158 (1165)
T ss_pred eEEeeccCHHHHHHHHhhhcccccccceeecc--ceEEEecCcCCccccHhHHHHHHhhcCCCCCcEEEEEecCCCCc--
Confidence 6789999999999999 4446666 6666655444467999999876443 334555542332111
Q ss_pred CCCC-CCChhhhHHhhcCCCcEEEecCChHHHHHHHHHHHHc---CCCcEEEEEcC------CCcc--c-----ccCCCc
Q 006816 433 DGPT-HQPVEQLAGLRAVPRLLAFRPADGNETAGSYRVAIAN---RDVPSVIALSR------QKIA--A-----NLEGTS 495 (630)
Q Consensus 433 ~G~t-Hq~~~d~a~l~~iP~l~v~~P~d~~e~~~~l~~a~~~---~~~P~~ir~~r------~~~~--~-----~~~~~~ 495 (630)
..| -|..+ ++...-+|-|+.|+|.+|+..+...+++- .+-||.+|... ..+. + ..++
T Consensus 159 -SSq~eqdSr---~~~~~a~iPvl~Ps~~qE~~d~~~~g~~lSr~~g~pV~lr~~t~v~h~~~~V~~~~~~~~~~~~~-- 232 (1165)
T PRK09193 159 -SSTLPHQSE---HAFKAAGMPVLFPANVQEILDYGLHGWAMSRYSGLWVGMKTVTDVVESSASVDVDPDRVQIVLPE-- 232 (1165)
T ss_pred -cccchhhhH---HHHHHcCCceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeeeeeEEcCCCcccCCCcc--
Confidence 111 12233 33334455699999999999999887642 46799997531 1110 0 0110
Q ss_pred ccccccc----cEE-----------------------------EecCCCCCCCcEEEEEeCchHHHHHHHHHHHHhcCCc
Q 006816 496 ADEVERG----GYI-----------------------------VSDNSSENKPEIILIGTGTELSLCEGTAKTLRQEGRR 542 (630)
Q Consensus 496 ~~~~~~G----~~~-----------------------------~~~~~~~G~~dvtiva~G~~v~~a~~aa~~L~~~gi~ 542 (630)
....+.+ .|. +... .+. .++-|||+|-....+.||.+.| |++
T Consensus 233 ~f~~~~~g~~~r~~~~p~~~~~~~~~~rl~a~~a~a~~n~ln~~~~~-~~~-~~iGIItsG~~y~~v~eal~~l---g~~ 307 (1165)
T PRK09193 233 DFEMPPGGLNIRWPDPPLEQEARLLDYKLYAALAYARANKLDRVVID-SPN-ARLGIVAAGKAYLDVRQALRDL---GLD 307 (1165)
T ss_pred cccCCcccccccCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCeeecC-CCC-CCEEEEecCccHHHHHHHHHHc---CCC
Confidence 0111222 110 0100 112 5799999999998888887765 554
Q ss_pred --------eEEEEcccccccCcccHHHHhccCCCCCeeEEEEecCCc
Q 006816 543 --------VRVVSLVCWRLFDRQPAEYKEKVLPSRVVKRVSVEAGSS 581 (630)
Q Consensus 543 --------~~Vi~~~~i~pld~~~~~~~~~v~~~~~~~~v~vEe~~~ 581 (630)
++|+-+-...||+.+.+.. ..+....+ +||||...
T Consensus 308 ~~~~~~~gi~ilKvgm~~PL~~~~i~~---Fa~g~~~v-lVVEE~~p 350 (1165)
T PRK09193 308 EETAARLGIRLYKVGMVWPLEPQGVRA---FAEGLDEI-LVVEEKRQ 350 (1165)
T ss_pred hhhhcccCCCEEEeCCCCCCCHHHHHH---HHhcCCEE-EEEecCch
Confidence 8899999999999987752 33333345 99999764
No 180
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=95.27 E-value=0.11 Score=49.06 Aligned_cols=114 Identities=16% Similarity=0.035 Sum_probs=72.7
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCceEe--eehHHHHHhhHHHHHHhcccCCCeEEEEecCCCCCCCCCCCCCChhhh
Q 006816 366 RNIRYGVREHAMAGISNGVALHGGGLIPFA--ATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQL 443 (630)
Q Consensus 366 R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~--~~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~~g~~G~tHq~~~d~ 443 (630)
|++.+ -.|++++.+|-|.|..- -+|-+ .+..+=+..+..-|.++...+.||+++...... ...+-.+||.+++.
T Consensus 37 ~~v~~-rhE~~A~~mAdgyar~s--g~~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g~~~~-~~~~~~~~q~~d~~ 112 (162)
T cd07037 37 RLHVR-VDERSAAFFALGLAKAS--GRPVAVVCTSGTAVANLLPAVVEAYYSGVPLLVLTADRPP-ELRGTGANQTIDQV 112 (162)
T ss_pred eEEec-cChHHHHHHHHHHHHhh--CCCEEEEECCchHHHHHhHHHHHHHhcCCCEEEEECCCCH-HhcCCCCCcccchh
Confidence 44444 68999999999999875 34444 346676667777777778889999998522222 22223357888877
Q ss_pred HHhhcCCCcE--EEecCC-------hHHHHHHHHHHHHcCCCcEEEEEc
Q 006816 444 AGLRAVPRLL--AFRPAD-------GNETAGSYRVAIANRDVPSVIALS 483 (630)
Q Consensus 444 a~l~~iP~l~--v~~P~d-------~~e~~~~l~~a~~~~~~P~~ir~~ 483 (630)
++++.+=... |-.|.+ +..+..+++.|...+.+|++|-+|
T Consensus 113 ~l~~~vtk~~~~v~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP 161 (162)
T cd07037 113 GLFGDYVRWSVDLPPPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNLP 161 (162)
T ss_pred hhccceeeEEEecCCcccchhHHHHHHHHHHHHHHHhCCCCCCEEEecc
Confidence 8887765432 223333 333444444444445689998765
No 181
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=94.58 E-value=0.36 Score=45.26 Aligned_cols=87 Identities=16% Similarity=0.199 Sum_probs=59.3
Q ss_pred eEEEEEcccccCchhHHHHHH-HhHHcCCCcEEEEEECCCCcc--cccccccChhcHHHHHHhC-CCeEEEEeCCCCCHH
Q 006816 137 RTYCIMSDGCAMEGISHEAAA-LAAHWKLNKLTLIYDDNHNTI--DGPTSLVLSEDISARFKSL-GWNTIMVENIHDNLS 212 (630)
Q Consensus 137 ~v~~~~GDG~~~eG~~~eal~-~a~~~~L~~li~i~~~N~~~i--~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~d~~ 212 (630)
++|+.+= ..|. ...++.+. .++.+++| ++++....+++. ++++.. ..+....++.+ |+.++.. . |..
T Consensus 64 ~pi~~~~-~~f~-~ra~dqi~~~~a~~~~p-v~~~~~~~g~~~~~~G~tH~--~~~~~a~~~~iPg~~v~~P---s-~~~ 134 (156)
T cd07033 64 KPFVSTF-SFFL-QRAYDQIRHDVALQNLP-VKFVGTHAGISVGEDGPTHQ--GIEDIALLRAIPNMTVLRP---A-DAN 134 (156)
T ss_pred eEEEEEC-HHHH-HHHHHHHHHHHhccCCC-eEEEEECCcEecCCCCcccc--hHHHHHHhcCCCCCEEEec---C-CHH
Confidence 3444333 3443 36778877 88899988 667777766554 444432 22334556666 8999888 5 999
Q ss_pred HHHHHHHHHHhcCCCcEEEEE
Q 006816 213 SFKEALMAAANETKKPTFIRV 233 (630)
Q Consensus 213 ~l~~al~~a~~~~~~P~~i~~ 233 (630)
++...++.+.+ .++|++|..
T Consensus 135 ~~~~ll~~a~~-~~~P~~irl 154 (156)
T cd07033 135 ETAAALEAALE-YDGPVYIRL 154 (156)
T ss_pred HHHHHHHHHHh-CCCCEEEEe
Confidence 99999999987 678998865
No 182
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=94.41 E-value=0.43 Score=45.14 Aligned_cols=114 Identities=18% Similarity=-0.003 Sum_probs=76.8
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCceEee--ehHHHHHhhHHHHHHhcccCCCeEEEEecCCCC-CCCCCCCCCChhh
Q 006816 366 RNIRYGVREHAMAGISNGVALHGGGLIPFAA--TFLIFSDYMKNSIRLSALSHAGVIYILTHDSIG-LGEDGPTHQPVEQ 442 (630)
Q Consensus 366 R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~--~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~-~g~~G~tHq~~~d 442 (630)
|++. .-.|++++-+|.|+|..- -+|-+. +..+=+..+..-|.++...+.||+++....... .+ -..+|.+++
T Consensus 40 ~~v~-~rhE~~A~~mA~gyar~t--g~~~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~g~~~~~~~~--~~~~q~~d~ 114 (164)
T cd07039 40 EFIQ-VRHEEAAAFAASAEAKLT--GKLGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIAGQVPTDELG--TDYFQEVDL 114 (164)
T ss_pred eEEE-eCCHHHHHHHHHHHHHHh--CCCEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEecCCcccccC--CCCCcccCH
Confidence 4444 378999999999999875 344332 344444556666777777899999985222211 12 224787888
Q ss_pred hHHhhcCCCcEEEecCChHHHHHHHHHHHHc---CCCcEEEEEcCC
Q 006816 443 LAGLRAVPRLLAFRPADGNETAGSYRVAIAN---RDVPSVIALSRQ 485 (630)
Q Consensus 443 ~a~l~~iP~l~v~~P~d~~e~~~~l~~a~~~---~~~P~~ir~~r~ 485 (630)
..+++.+=.+ ...+.++.++...++.|++. ..+|++|-+|+.
T Consensus 115 ~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~d 159 (164)
T cd07039 115 LALFKDVAVY-NETVTSPEQLPELLDRAIRTAIAKRGVAVLILPGD 159 (164)
T ss_pred HHHHHHhhcE-EEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeChH
Confidence 8889888764 44556777777777766643 469999998875
No 183
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=94.19 E-value=1.8 Score=43.56 Aligned_cols=92 Identities=14% Similarity=0.026 Sum_probs=59.1
Q ss_pred CceEeee--hHHHHHhhHHHHHHhcccCCCeEEEEecCCCCCCCCCCCCCC------------------------hhhhH
Q 006816 391 LIPFAAT--FLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQP------------------------VEQLA 444 (630)
Q Consensus 391 ~~pv~~~--~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~~g~~G~tHq~------------------------~~d~a 444 (630)
-+||+.+ -..|.+..+..|..+...++|++++.-..+. +|.-|..++. .+-..
T Consensus 80 ~r~VV~i~GDG~~~~m~~~eL~ta~~~~~pv~~vVlNN~~-yg~tg~q~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~ 158 (235)
T cd03376 80 DITVVAFAGDGGTADIGFQALSGAAERGHDILYICYDNEA-YMNTGIQRSGSTPYGAWTTTTPVGKVSFGKKQPKKDLPL 158 (235)
T ss_pred CCeEEEEEcCchHHhhHHHHHHHHHHcCCCeEEEEECCcc-cccCCCCCCCCCCCCCEeecCCCCccccccccccCCHHH
Confidence 5788765 5677667777787778889998888744442 3311111111 11112
Q ss_pred HhhcC--CCcEEEecCChHHHHHHHHHHHHcCCCcEEEEEcC
Q 006816 445 GLRAV--PRLLAFRPADGNETAGSYRVAIANRDVPSVIALSR 484 (630)
Q Consensus 445 ~l~~i--P~l~v~~P~d~~e~~~~l~~a~~~~~~P~~ir~~r 484 (630)
+.+++ +++..+...++.|+..+++.+++. ++|++|-+.-
T Consensus 159 iA~a~G~~~~~~~~v~~~~el~~al~~a~~~-~gP~lIev~~ 199 (235)
T cd03376 159 IMAAHNIPYVATASVAYPEDLYKKVKKALSI-EGPAYIHILS 199 (235)
T ss_pred HHHHcCCcEEEEEcCCCHHHHHHHHHHHHhC-CCCEEEEEEC
Confidence 23333 334446789999999999999997 8999986543
No 184
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=93.62 E-value=0.88 Score=55.34 Aligned_cols=198 Identities=14% Similarity=0.070 Sum_probs=116.4
Q ss_pred CccccccchHHHHHHHHHH---------HhcCCCCceEeeehHHHHHhhHHHHHHh--ccc--CCCeEEEEecCCCCCCC
Q 006816 366 RNIRYGVREHAMAGISNGV---------ALHGGGLIPFAATFLIFSDYMKNSIRLS--ALS--HAGVIYILTHDSIGLGE 432 (630)
Q Consensus 366 R~~~~gIaE~~~vg~a~Gl---------A~~G~~~~pv~~~~~~F~~~a~dqi~~~--a~~--~~pv~~v~~~~g~~~g~ 432 (630)
=+|.-|+.|.-++++.-|- +..| .+.+++.=..=++++-|.++.+ ++. +--|+++...|-.....
T Consensus 86 i~fe~~~NEklAatav~Gsq~~e~~~~a~~dG--v~~lwygK~pGvn~aaD~l~h~n~~gt~~~GGvv~v~gDDpg~~SS 163 (1186)
T PRK13029 86 VVFQPGVNEELAATAVWGSQQLELDPGAKRDG--VFGMWYGKGPGVDRSGDALRHANLAGTSPLGGVLVLAGDDHGAKSS 163 (1186)
T ss_pred eEEeecCCHHHHHHHhhhhhhcccccceeecc--ceEEEecCcCCcccchhHHHHhhccccCCCCcEEEEEecCCCCccc
Confidence 5778999999996555554 3455 5555554334457899999864 354 33455554333211110
Q ss_pred CCCCCCChhhhHHhhcCCCcEEEecCChHHHHHHHHHHHHc---CCCcEEEEEcCC------Cc--cc-----ccCCCcc
Q 006816 433 DGPTHQPVEQLAGLRAVPRLLAFRPADGNETAGSYRVAIAN---RDVPSVIALSRQ------KI--AA-----NLEGTSA 496 (630)
Q Consensus 433 ~G~tHq~~~d~a~l~~iP~l~v~~P~d~~e~~~~l~~a~~~---~~~P~~ir~~r~------~~--~~-----~~~~~~~ 496 (630)
.+-|..+ ++...-+|-|+.|+|.+|+..+...+++- .+-|+.+|.... .+ .+ ..+. .
T Consensus 164 --q~eqdSr---~~~~~a~iPvl~Ps~~qE~~d~~~~a~~lSr~~g~~V~lr~~t~v~~s~~~V~~~~~r~~~~~p~--~ 236 (1186)
T PRK13029 164 --SVAHQSD---HTFIAWGIPVLYPASVQDYLDYGLHGWAMSRYSGLWVGMKCVTEVVESTASVDLDPDRVDIVLPD--D 236 (1186)
T ss_pred --cCHHHHH---HHHHHcCCceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEeeeeeecceeeecCCcccccCCcc--c
Confidence 1112233 33334455699999999999999887643 467999985321 11 00 0110 0
Q ss_pred cccccc----cE-----------------------------EEecCCCCCCCcEEEEEeCchHHHHHHHHHHHHhcCC--
Q 006816 497 DEVERG----GY-----------------------------IVSDNSSENKPEIILIGTGTELSLCEGTAKTLRQEGR-- 541 (630)
Q Consensus 497 ~~~~~G----~~-----------------------------~~~~~~~~G~~dvtiva~G~~v~~a~~aa~~L~~~gi-- 541 (630)
...+.| .| ++.. ..+..++-|||+|-....+.||.+.| |+
T Consensus 237 f~~~~~g~~~r~~~~p~~~e~~~~~~kl~a~~a~a~~n~ln~~~~--~~~~~~~GIItsG~~y~~v~eAl~~l---gl~~ 311 (1186)
T PRK13029 237 FVLPPGGLHIRWPDDPLAQEERMLEFKWYAALAYVRANRLNRLVI--DGPNPRLGIIAAGKAYLDVRQALRDL---GLDD 311 (1186)
T ss_pred ccCCccccccccCCCcHHHHHHHHHHHHHHHHHHHHhCCCCEEec--cCCCCCEEEEecCccHHHHHHHHHHc---CCCh
Confidence 000110 00 0110 11125799999999998888887665 44
Q ss_pred ------ceEEEEcccccccCcccHHHHhccCCCCCeeEEEEecCCc
Q 006816 542 ------RVRVVSLVCWRLFDRQPAEYKEKVLPSRVVKRVSVEAGSS 581 (630)
Q Consensus 542 ------~~~Vi~~~~i~pld~~~~~~~~~v~~~~~~~~v~vEe~~~ 581 (630)
.++|+-+-...||+.+.+.. ..+....+ +||||...
T Consensus 312 ~~~~~~gi~ilKvgm~~PL~~~~i~~---Fa~g~d~v-lVVEE~~p 353 (1186)
T PRK13029 312 ATCAALGIRLLKVGCVWPLDPQSVRE---FAQGLEEV-LVVEEKRA 353 (1186)
T ss_pred hhccccCCCEEEeCCCCCCCHHHHHH---HHhcCCEE-EEEecCch
Confidence 38899999999999987752 23333345 99999764
No 185
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=93.56 E-value=0.34 Score=59.65 Aligned_cols=103 Identities=15% Similarity=0.074 Sum_probs=74.8
Q ss_pred ceEEEEEccccc-CchhHHHHHHHhHHcCCCcEEEEEECCCCccccccc-----------------ccChhcHHHHHHhC
Q 006816 136 HRTYCIMSDGCA-MEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGPTS-----------------LVLSEDISARFKSL 197 (630)
Q Consensus 136 ~~v~~~~GDG~~-~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~~~-----------------~~~~~~~~~~~~a~ 197 (630)
..||++.|||.. ..| +..+..+...+.+..++++||..|+..+-+. ....-|+..++.++
T Consensus 952 ~sv~~~~GDG~~~diG--~~~l~~~~~r~~~v~~i~~dne~Y~nTggQ~S~~tp~g~~t~~~~~g~~~~kkd~~~~a~~~ 1029 (1165)
T TIGR02176 952 KSVWIIGGDGWAYDIG--YGGLDHVLASGKDVNVLVMDTEVYSNTGGQSSKATPTGAIAKFAAAGKRTSKKDLGMMAMTY 1029 (1165)
T ss_pred ceeEEEecchhhhccC--ccchHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCccccCCCCCCCCCcCHHHHHHHC
Confidence 589999999954 434 5578888888988777777777776543211 00135788899999
Q ss_pred CCeEEEEeC-CCCCHHHHHHHHHHHHhcCCCcEEEEEeecccccCc
Q 006816 198 GWNTIMVEN-IHDNLSSFKEALMAAANETKKPTFIRVKKMRERVNW 242 (630)
Q Consensus 198 G~~~~~v~d-G~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~~~g~ 242 (630)
|..|+--.- |- ++.++.+++++|.+ .+||.+|++.+.--..|+
T Consensus 1030 g~~yvA~~~~~~-~~~~~~~~~~~A~~-~~G~s~i~~~~pC~~~g~ 1073 (1165)
T TIGR02176 1030 GYVYVAQVSMGA-NMQQTLKAFREAEA-YDGPSIVIAYSPCINHGI 1073 (1165)
T ss_pred CCCEEEEEeccc-CHHHHHHHHHHHHc-CCCCEEEEEECCCcccCc
Confidence 987763323 55 89999999999987 799999999875443355
No 186
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=93.52 E-value=1.4 Score=45.48 Aligned_cols=150 Identities=13% Similarity=0.012 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHhCCCeEEEecCCCCCcccccccccCcCCCCCCCCCccccccchHHHHHHHHHHHhcCCCCceEeee--
Q 006816 320 GYSEKCLNQLAKVLPGLIGGSADLASSNKAYLLGYHDFSQPDSPWGRNIRYGVREHAMAGISNGVALHGGGLIPFAAT-- 397 (630)
Q Consensus 320 ~a~~~~L~~l~~~~~~iv~~~aD~~~s~~~~~~~~~~f~~~~~~p~R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~~-- 397 (630)
.++.++|.++....++.++ ..|++-+.... .| +.-..+++.. ...+.+|.|+++.. +-++|+.+
T Consensus 20 ~al~~al~~l~~~~~~~iv-vsdiGc~~~~~-----~~-----~~~~~~~~~~--G~alp~A~GaklA~-Pd~~VV~i~G 85 (279)
T PRK11866 20 EALRKALAELGIPPENVVV-VSGIGCSSNLP-----EF-----LNTYGIHGIH--GRVLPIATGVKWAN-PKLTVIGYGG 85 (279)
T ss_pred HHHHHHHHHhcCCCCCEEE-EECCchhhhhh-----hh-----ccCCCccccc--ccHHHHHHHHHHHC-CCCcEEEEEC
Confidence 4566666555433345444 45766544211 11 1112223332 45566788887765 24556654
Q ss_pred hHHHHHhhHHHHHHhcccCCCeEEEEecCCCCCCCCC-CCC-------------C-------ChhhhHHhhcCCCcEEEe
Q 006816 398 FLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDG-PTH-------------Q-------PVEQLAGLRAVPRLLAFR 456 (630)
Q Consensus 398 ~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~~g~~G-~tH-------------q-------~~~d~a~l~~iP~l~v~~ 456 (630)
-.++++.....+-.++..++|+++++-..+. +|.-| ..+ . ....++.-..++.+....
T Consensus 86 DG~~f~ig~~eL~tA~rrn~~i~vIV~nN~~-ygmtggQ~s~~t~~g~~t~~t~~g~~~~~~d~~~iA~a~G~~~Va~~~ 164 (279)
T PRK11866 86 DGDGYGIGLGHLPHAARRNVDITYIVSNNQV-YGLTTGQASPTTPRGVKTKTTPDGNIEEPFNPIALALAAGATFVARGF 164 (279)
T ss_pred ChHHHHccHHHHHHHHHHCcCcEEEEEEChh-hhhhcccccCCCCCCceeeccCCCCCCCCCCHHHHHHHCCCCEEEEEc
Confidence 5555667777777788889998887744432 22211 100 0 122333333455566777
Q ss_pred cCChHHHHHHHHHHHHcCCCcEEEEEcCC
Q 006816 457 PADGNETAGSYRVAIANRDVPSVIALSRQ 485 (630)
Q Consensus 457 P~d~~e~~~~l~~a~~~~~~P~~ir~~r~ 485 (630)
+.++.|++.+++.|+++ ++|++|-.-..
T Consensus 165 ~~~~~~l~~~l~~Al~~-~Gps~I~v~~p 192 (279)
T PRK11866 165 SGDVKHLKEIIKEAIKH-KGFSFIDVLSP 192 (279)
T ss_pred CCCHHHHHHHHHHHHhC-CCCEEEEEeCC
Confidence 79999999999999997 99999975443
No 187
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=93.26 E-value=3.8 Score=41.21 Aligned_cols=118 Identities=11% Similarity=0.001 Sum_probs=67.8
Q ss_pred CCCCccccccchHHHHHHHHHHHh----c-----CCCCceEeee--hHHHHHhhHHHHHHhcccCCCeEEEEecCCCCCC
Q 006816 363 PWGRNIRYGVREHAMAGISNGVAL----H-----GGGLIPFAAT--FLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLG 431 (630)
Q Consensus 363 ~p~R~~~~gIaE~~~vg~a~GlA~----~-----G~~~~pv~~~--~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~~g 431 (630)
+|.++++..+.-...+|.+...|+ . - .-+||+.+ -..|++..+..+.+....++|++++.-..+. +|
T Consensus 51 ~~~~~~~~~~~~~g~mG~GlpaAiGA~~a~~~~~~-p~~~Vv~i~GDG~~~~~g~~~l~ta~~~~l~i~ivVlNN~~-yg 128 (237)
T cd02018 51 WAVPWVNSLFEDANAVASGLKRGLKARFPKDRELD-KKKDVVVIGGDGATYDIGFGALSHSLFRGEDITVIVLDNEV-YS 128 (237)
T ss_pred cCCCeeeccccCHHHHHHHHHHHHHhhcccccccC-CCCcEEEEeCchHHHhccHHHHHHHHHcCCCeEEEEECCcc-cc
Confidence 455666665544455554433332 2 1 24567665 4556655555555555688998888744432 22
Q ss_pred CCCCCC-------------------CC--hhhhHHhhcCCCcEEEecCChHHHHHHHHHHHH-cCCCcEEEEEc
Q 006816 432 EDGPTH-------------------QP--VEQLAGLRAVPRLLAFRPADGNETAGSYRVAIA-NRDVPSVIALS 483 (630)
Q Consensus 432 ~~G~tH-------------------q~--~~d~a~l~~iP~l~v~~P~d~~e~~~~l~~a~~-~~~~P~~ir~~ 483 (630)
.-+..+ +. ...++--..++..+...+.++.|++.+|+.+++ . ++|++|-..
T Consensus 129 ~~~~q~~~~~~~g~~~~~~~~~~~~~~~D~~~iA~a~G~~~~~~~~v~~~~~l~~al~~al~~~-~GP~lI~v~ 201 (237)
T cd02018 129 NTGGQRSGATPLGADSKMAPAGKKEDKKDLVLIAATHGCVYVARLSPALKKHFLKVVKEAISRT-DGPTFIHAY 201 (237)
T ss_pred CCCCCCCCCCcCCCcccccCCCCcCCCCCHHHHHHHCCCCEEEEEccCCHHHHHHHHHHHHhcC-CCCEEEEEe
Confidence 211111 11 122222223444444469999999999999997 7 899999654
No 188
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=93.25 E-value=0.77 Score=42.39 Aligned_cols=105 Identities=15% Similarity=0.092 Sum_probs=62.4
Q ss_pred hhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEE-cccccCchhHHHHHHHhHHcCCCcEEEEEECCCCccccccccc
Q 006816 107 QGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIM-SDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGPTSLV 185 (630)
Q Consensus 107 ~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~-GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~~~~~ 185 (630)
.+..+|.|++.+. . ..++++. |-|.. ...+++..|...++| +++|..+.+..... ....
T Consensus 46 ~a~~~A~G~a~~~--------------~-~~v~~~~~gpg~~---~~~~~l~~a~~~~~P-vl~i~~~~~~~~~~-~~~~ 105 (154)
T cd06586 46 GAAGAAAGYARAG--------------G-PPVVIVTSGTGLL---NAINGLADAAAEHLP-VVFLIGARGISAQA-KQTF 105 (154)
T ss_pred HHHHHHHHHHHhh--------------C-CEEEEEcCCCcHH---HHHHHHHHHHhcCCC-EEEEeCCCChhhhc-cCcc
Confidence 4556677777765 2 3344444 77765 467888899999999 77777655543211 1111
Q ss_pred ChhcHHHHHHhCCCeEEEEeC-CCCCHHHHHHHHHHHHhcCCCcEEEEE
Q 006816 186 LSEDISARFKSLGWNTIMVEN-IHDNLSSFKEALMAAANETKKPTFIRV 233 (630)
Q Consensus 186 ~~~~~~~~~~a~G~~~~~v~d-G~~d~~~l~~al~~a~~~~~~P~~i~~ 233 (630)
...+....++.+.+-...+.+ .+ ..+.+.++++.+.. ..+|++|.+
T Consensus 106 q~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~a~~-~~gPv~l~i 152 (154)
T cd06586 106 QSMFDLGMYRSIPEANISSPSPAE-LPAGIDHAIRTAYA-SQGPVVVRL 152 (154)
T ss_pred cccCHHHHHHHhhheEEEeCCHHH-HHHHHHHHHHHHhc-CCCCEEEEc
Confidence 223456677777655555511 12 33445666666665 578999875
No 189
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=93.07 E-value=1.5 Score=41.11 Aligned_cols=108 Identities=17% Similarity=0.189 Sum_probs=63.2
Q ss_pred chhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhH-HcCCCcEEEEE-ECCCCccccccc
Q 006816 106 GQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAA-HWKLNKLTLIY-DDNHNTIDGPTS 183 (630)
Q Consensus 106 G~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~-~~~L~~li~i~-~~N~~~i~~~~~ 183 (630)
+++..+|.|.+++. .+.++|+.+=| + |...-++..|. ..+.| +++|. ..+..+-..+.+
T Consensus 44 e~aa~~aAg~~~~~---------------~~~~v~~~~sG-~--gn~~~~l~~a~~~~~~P-vl~i~g~rg~~~~~~~~q 104 (157)
T TIGR03845 44 EEGVGICAGAYLAG---------------KKPAILMQSSG-L--GNSINALASLNKTYGIP-LPILASWRGVYKEKIPAQ 104 (157)
T ss_pred HHHHHHHHHHHHhc---------------CCcEEEEeCCc-H--HHHHHHHHHHHHcCCCC-EEEEEeccCCCCCCCccc
Confidence 46777777777543 45678888877 3 36777888999 99999 55554 333222221112
Q ss_pred ccChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEe
Q 006816 184 LVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVK 234 (630)
Q Consensus 184 ~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~ 234 (630)
.....-....+...++.+..+.+.. |...+.+|++.+.+ .++|+.|.++
T Consensus 105 ~~~g~~~~~~l~~~~i~~~~i~~~e-~~~~i~~A~~~a~~-~~gPv~il~~ 153 (157)
T TIGR03845 105 IPMGRATPKLLDTLGIPYTIPREPE-EAKLIEKAISDAYE-NSRPVAALLD 153 (157)
T ss_pred cchhhhhHHHHHHcCCCeEEeCCHH-HHHHHHHHHHHHHh-CCCCEEEEEe
Confidence 1111112334567787788882222 33334555555665 5699998764
No 190
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=93.06 E-value=0.78 Score=46.87 Aligned_cols=82 Identities=17% Similarity=0.200 Sum_probs=61.8
Q ss_pred eEEEEEcccc--cCchhHHHHHHHhHHcCCCcEEEEEECC--CCcccccccccC---hh-cHHHHHHhCCCeEEEEeCCC
Q 006816 137 RTYCIMSDGC--AMEGISHEAAALAAHWKLNKLTLIYDDN--HNTIDGPTSLVL---SE-DISARFKSLGWNTIMVENIH 208 (630)
Q Consensus 137 ~v~~~~GDG~--~~eG~~~eal~~a~~~~L~~li~i~~~N--~~~i~~~~~~~~---~~-~~~~~~~a~G~~~~~v~dG~ 208 (630)
+++.++.||. +.+|..-.++..|.+.++-.+++++|+. +-+|-...+... .. .+..++..|+++|..|+ +
T Consensus 166 qlilLISDG~~~~~e~~~~~~~r~a~e~~i~l~~I~ld~~~~~~SI~d~~~~~~~~~~~~~l~~Yl~~fpfpYy~~~--~ 243 (266)
T cd01460 166 QLLLIISDGRGEFSEGAQKVRLREAREQNVFVVFIIIDNPDNKQSILDIKVVSFKNDKSGVITPYLDEFPFPYYVIV--R 243 (266)
T ss_pred cEEEEEECCCcccCccHHHHHHHHHHHcCCeEEEEEEcCCCCCCCcccccccccCCCCccHHHHHHhcCCCCeEEEe--c
Confidence 8999999999 8889888888999999998777777775 445543322111 12 67889999999998875 5
Q ss_pred CCHHHHHHHHHHH
Q 006816 209 DNLSSFKEALMAA 221 (630)
Q Consensus 209 ~d~~~l~~al~~a 221 (630)
|+++|-+.+..+
T Consensus 244 -~~~~lp~~l~~~ 255 (266)
T cd01460 244 -DLNQLPSVLSDA 255 (266)
T ss_pred -ChhHhHHHHHHH
Confidence 898888877654
No 191
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=93.00 E-value=1.6 Score=45.21 Aligned_cols=147 Identities=11% Similarity=0.010 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHhCCCeEEEecCCCCCcccccccccCcCCCCCCCCCccccccch---HHHHHHHHHHHhcCCCCceEee
Q 006816 320 GYSEKCLNQLAKVLPGLIGGSADLASSNKAYLLGYHDFSQPDSPWGRNIRYGVRE---HAMAGISNGVALHGGGLIPFAA 396 (630)
Q Consensus 320 ~a~~~~L~~l~~~~~~iv~~~aD~~~s~~~~~~~~~~f~~~~~~p~R~~~~gIaE---~~~vg~a~GlA~~G~~~~pv~~ 396 (630)
.++.++|.++.-..++.+++ .|++-+.. .| +++++.--- ...+.+|.|.++.. +-+||+.
T Consensus 14 ~~~~~a~~~l~~~p~d~iiv-sdiGc~~~--------------~~-~~l~~~~~~t~mG~alPaAiGaklA~-Pd~~VVa 76 (287)
T TIGR02177 14 SALQRALAELNLDPEQVVVV-SGIGCSAK--------------TP-HYVNVNGFHGLHGRALPVATGIKLAN-PHLKVIV 76 (287)
T ss_pred HHHHHHHHHhcCCCCCEEEE-ECCCcccc--------------cC-CeEecCCcccccccHHHHHHHHHHHC-CCCcEEE
Confidence 46677777665433454444 47654431 12 233322110 33456778877765 3456665
Q ss_pred e--hHHHHHhhHHHHHHhcccCCCeEEEEecCCCCCCCCC----CCC----------C-------ChhhhHHhhcCCCcE
Q 006816 397 T--FLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDG----PTH----------Q-------PVEQLAGLRAVPRLL 453 (630)
Q Consensus 397 ~--~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~~g~~G----~tH----------q-------~~~d~a~l~~iP~l~ 453 (630)
+ -.+|.......+-.++..++|+++++-..+. +|.-| ++- + ...-+++.....-.-
T Consensus 77 i~GDG~f~~mg~~eL~tA~r~nl~I~vIVlNN~~-yGmt~gQ~sp~t~~G~~~~~~~~g~~~~~~np~~~a~A~g~g~va 155 (287)
T TIGR02177 77 VGGDGDLYGIGGNHFVAAGRRNVDITVIVHDNQV-YGLTKGQASPTLLKGVKTKSLPYPNIQDPVNPLLLAIALGYTFVA 155 (287)
T ss_pred EeCchHHHhccHHHHHHHHHhCcCeEEEEEECHH-HHhhhcccccCccCCcceeecccCccCCCCCHHHHHHhCCCCeEE
Confidence 4 5667655566666677789998887744422 22111 010 0 111222333332223
Q ss_pred EEecCChHHHHHHHHHHHHcCCCcEEEEEcCC
Q 006816 454 AFRPADGNETAGSYRVAIANRDVPSVIALSRQ 485 (630)
Q Consensus 454 v~~P~d~~e~~~~l~~a~~~~~~P~~ir~~r~ 485 (630)
.....++.|+..+++.|+++ ++|++|-.-..
T Consensus 156 ~~~~~~~~eL~~ai~~Al~~-~GpslIeV~~p 186 (287)
T TIGR02177 156 RGFSGDVAHLKEIIKEAINH-KGYALVDILQP 186 (287)
T ss_pred EEecCCHHHHHHHHHHHHhC-CCCEEEEEeCC
Confidence 33368999999999999997 99999876543
No 192
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=92.49 E-value=4.7 Score=38.50 Aligned_cols=117 Identities=21% Similarity=0.128 Sum_probs=70.3
Q ss_pred CCCCCcccccc-ch-HHHHHHHHHHHhcCCCCceEeee--hHHHHHhhHHHHHHhcccCCCeEEEEecCC-CCC------
Q 006816 362 SPWGRNIRYGV-RE-HAMAGISNGVALHGGGLIPFAAT--FLIFSDYMKNSIRLSALSHAGVIYILTHDS-IGL------ 430 (630)
Q Consensus 362 ~~p~R~~~~gI-aE-~~~vg~a~GlA~~G~~~~pv~~~--~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g-~~~------ 430 (630)
..|.+++..+. .= ...++.|.|.++.. .-++++.+ -..|+... ..+..+...++|++++.-..+ ++.
T Consensus 39 ~~~~~~~~~~~~g~mG~~~~~aiGa~~a~-~~~~vv~i~GDG~f~~~~-~el~t~~~~~lp~~~iv~NN~~~~~~~~~~~ 116 (178)
T cd02014 39 NGKQRFILSGLLATMGNGLPGAIAAKLAY-PDRQVIALSGDGGFAMLM-GDLITAVKYNLPVIVVVFNNSDLGFIKWEQE 116 (178)
T ss_pred CCCCcEEcCCCCchhhhHHHHHHHHHHhC-CCCcEEEEEcchHHHhhH-HHHHHHHHhCCCcEEEEEECCchhHHHHHHH
Confidence 45778886543 21 12344566666654 23455543 56776553 235556677999877775554 321
Q ss_pred --C--CCCCCCCChhhhH-HhhcCCCcEEEecCChHHHHHHHHHHHHcCCCcEEEEEc
Q 006816 431 --G--EDGPTHQPVEQLA-GLRAVPRLLAFRPADGNETAGSYRVAIANRDVPSVIALS 483 (630)
Q Consensus 431 --g--~~G~tHq~~~d~a-~l~~iP~l~v~~P~d~~e~~~~l~~a~~~~~~P~~ir~~ 483 (630)
+ ..+-..+. -|.. +..+. |++.+...+..|++..++.+++. ++|++|-+.
T Consensus 117 ~~~~~~~~~~~~~-~d~~~la~a~-G~~~~~v~~~~el~~~l~~a~~~-~~p~liev~ 171 (178)
T cd02014 117 VMGQPEFGVDLPN-PDFAKIAEAM-GIKGIRVEDPDELEAALDEALAA-DGPVVIDVV 171 (178)
T ss_pred HhcCCceeccCCC-CCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhC-CCCEEEEEE
Confidence 1 01111112 2333 44444 78888899999999999999987 899998653
No 193
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=92.44 E-value=1.8 Score=41.10 Aligned_cols=100 Identities=18% Similarity=0.100 Sum_probs=65.3
Q ss_pred hhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHH-HHhHHc--------CCCcEEEEEECCCCc
Q 006816 107 QGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAA-ALAAHW--------KLNKLTLIYDDNHNT 177 (630)
Q Consensus 107 ~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal-~~a~~~--------~L~~li~i~~~N~~~ 177 (630)
..++.|.|+|+. ..++|+.+.=+.|.. -.+|-+ +.++.. ++| ++++....+++
T Consensus 55 ~~vg~AaGlA~~----------------G~~pi~~~~~a~Fl~-ra~dQi~~~~a~~~~~~~~~~~~p-v~i~~~~gg~~ 116 (167)
T cd07036 55 GIVGLAVGAAMN----------------GLRPIVEIMFADFAL-PAFDQIVNEAAKLRYMSGGQFKVP-IVIRGPNGGGI 116 (167)
T ss_pred HHHHHHHHHHHc----------------CCEEEEEeehHHHHH-HHHHHHHHHHHHHHHhcCCCccCC-EEEEEeCCCCC
Confidence 345667777763 345665544455543 456655 334433 466 77777766655
Q ss_pred ccccccccChhcHHHHHHhC-CCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEE
Q 006816 178 IDGPTSLVLSEDISARFKSL-GWNTIMVENIHDNLSSFKEALMAAANETKKPTFIR 232 (630)
Q Consensus 178 i~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~ 232 (630)
..++++ ..++ ..+++++ |+.++.. . |..+....++.+.+ .++|+++.
T Consensus 117 ~~G~th--s~~~-~a~lr~iPg~~V~~P---s-d~~e~~~~l~~~~~-~~~P~~~~ 164 (167)
T cd07036 117 GGGAQH--SQSL-EAWFAHIPGLKVVAP---S-TPYDAKGLLKAAIR-DDDPVIFL 164 (167)
T ss_pred CcChhh--hhhH-HHHHhcCCCCEEEee---C-CHHHHHHHHHHHHh-CCCcEEEE
Confidence 455542 2334 4778888 9999998 4 99999999999887 68999875
No 194
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=92.11 E-value=0.78 Score=52.08 Aligned_cols=115 Identities=16% Similarity=0.081 Sum_probs=79.4
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCceEe-eehHHHHHhhHHHHHHhcccCCCeEEEEecCCCC-CCCCCCCCCChhhh
Q 006816 366 RNIRYGVREHAMAGISNGVALHGGGLIPFA-ATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIG-LGEDGPTHQPVEQL 443 (630)
Q Consensus 366 R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~-~~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~-~g~~G~tHq~~~d~ 443 (630)
|++.+ -.|++++.+|-|+|..- |...++ .++.+=+.-++.-|.++...+.||+++....... .+. ..||.+.+.
T Consensus 38 ~~i~~-~hE~~A~~~Adgyar~t-g~~gv~~~t~GpG~~n~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~--~~~q~~d~~ 113 (539)
T TIGR02418 38 ELIVV-RHEQNAAFMAQAVGRIT-GKPGVALVTSGPGCSNLVTGLATANSEGDPVVAIGGQVKRADLLK--LTHQSMDNV 113 (539)
T ss_pred CEEEe-CcHHHHHHHHHHHHHHh-CCceEEEECCCCCHhHHHHHHHHHhhcCCCEEEEeCCCccccccc--Ccccccchh
Confidence 56665 58999999999999764 244444 3566666667777777777899999985222221 232 348988889
Q ss_pred HHhhcCCCcEEEecCChHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 006816 444 AGLRAVPRLLAFRPADGNETAGSYRVAIA----NRDVPSVIALSRQ 485 (630)
Q Consensus 444 a~l~~iP~l~v~~P~d~~e~~~~l~~a~~----~~~~P~~ir~~r~ 485 (630)
++++.+--. .+...++.++...++.|++ .+.+|++|-+|+.
T Consensus 114 ~~~~~~tk~-~~~i~~~~~~~~~~~~A~~~a~~~~~GPV~l~iP~d 158 (539)
T TIGR02418 114 ALFRPITKY-SAEVQDPDALSEVVANAFRAAESGKPGAAFVSLPQD 158 (539)
T ss_pred hhhhcceee-eeecCCHHHHHHHHHHHHHHHhcCCCCCEEEEcChh
Confidence 999988653 3334566777666665553 3468999999876
No 195
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=91.96 E-value=3.4 Score=39.48 Aligned_cols=118 Identities=11% Similarity=-0.030 Sum_probs=69.2
Q ss_pred CCCCCccccccc--hHHHHHHHHHHHhcCCCCceEeee--hHHHHHhhHHHHHHhcccCCCeEEEE-ecCCCCCCC----
Q 006816 362 SPWGRNIRYGVR--EHAMAGISNGVALHGGGLIPFAAT--FLIFSDYMKNSIRLSALSHAGVIYIL-THDSIGLGE---- 432 (630)
Q Consensus 362 ~~p~R~~~~gIa--E~~~vg~a~GlA~~G~~~~pv~~~--~~~F~~~a~dqi~~~a~~~~pv~~v~-~~~g~~~g~---- 432 (630)
..|.||+..+-. =...++.|.|.++.- +-+|++.+ -..|... ..-|..+...++|++++. ...+++.-.
T Consensus 36 ~~~~~~~~~~~~g~mG~~lp~aiGa~la~-~~~~vv~i~GDG~f~m~-~~eL~ta~~~~l~vi~vV~NN~~~g~~~~~~~ 113 (177)
T cd02010 36 YAPNTCLISNGLATMGVALPGAIGAKLVY-PDRKVVAVSGDGGFMMN-SQELETAVRLKIPLVVLIWNDNGYGLIKWKQE 113 (177)
T ss_pred CCCCCEEeCCCChhhhhHHHHHHHHHHhC-CCCcEEEEEcchHHHhH-HHHHHHHHHHCCCeEEEEEECCcchHHHHHHH
Confidence 457888865431 122334566666543 24566654 4566532 233555566789988875 444443100
Q ss_pred --CCC-CC---CChhhhHHhhcCCCcEEEecCChHHHHHHHHHHHHcCCCcEEEEEc
Q 006816 433 --DGP-TH---QPVEQLAGLRAVPRLLAFRPADGNETAGSYRVAIANRDVPSVIALS 483 (630)
Q Consensus 433 --~G~-tH---q~~~d~a~l~~iP~l~v~~P~d~~e~~~~l~~a~~~~~~P~~ir~~ 483 (630)
.+. .+ +..+-.++.+++ |++-+.-.+..|++..++++++. ++|++|-+.
T Consensus 114 ~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~-~~p~liev~ 168 (177)
T cd02010 114 KEYGRDSGVDFGNPDFVKYAESF-GAKGYRIESADDLLPVLERALAA-DGVHVIDCP 168 (177)
T ss_pred HhcCCcccCcCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHhC-CCCEEEEEE
Confidence 010 11 112222334444 67778889999999999999986 899999654
No 196
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=91.95 E-value=0.92 Score=51.36 Aligned_cols=117 Identities=10% Similarity=0.028 Sum_probs=76.2
Q ss_pred CCccccccchHHHHHHHHHHHhcCCCCceEee-e-hHHHHHhhHHHHHHhcccCCCeEEEEecCCCCCCCCCCCCCChhh
Q 006816 365 GRNIRYGVREHAMAGISNGVALHGGGLIPFAA-T-FLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQ 442 (630)
Q Consensus 365 ~R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~-~-~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~~g~~G~tHq~~~d 442 (630)
=|++. --.|++++.+|.|+|... -+|-+. + -.+=+..++.-|.++...+.||+++........-..+..+|.+..
T Consensus 49 i~~i~-~~hE~~A~~~Adgyar~t--g~~~v~~vt~gpG~~N~~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~d~ 125 (530)
T PRK07092 49 FRYVL-GLQEAVVVGMADGYAQAT--GNAAFVNLHSAAGVGNAMGNLFTAFKNHTPLVITAGQQARSILPFEPFLAAVQA 125 (530)
T ss_pred CCEEE-EccHHHHHHHHHHHHHHh--CCceEEEeccCchHHHHHHHHHHHhhcCCCEEEEecCCcccccCccchhcccCH
Confidence 36664 489999999999999976 344443 3 223334666777777778999998853222221112444455566
Q ss_pred hHHhhcCCCcEEEecCChHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 006816 443 LAGLRAVPRLLAFRPADGNETAGSYRVAIA----NRDVPSVIALSRQ 485 (630)
Q Consensus 443 ~a~l~~iP~l~v~~P~d~~e~~~~l~~a~~----~~~~P~~ir~~r~ 485 (630)
..+++.+-...... .++.++..+++.|++ .+.+|++|-+|+.
T Consensus 126 ~~l~~~~tk~~~~v-~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~d 171 (530)
T PRK07092 126 AELPKPYVKWSIEP-ARAEDVPAAIARAYHIAMQPPRGPVFVSIPYD 171 (530)
T ss_pred HHhhcccccceeec-CCHHHHHHHHHHHHHHHhcCCCCcEEEEccHH
Confidence 78888887654444 567776666666654 3468999999865
No 197
>PRK07064 hypothetical protein; Provisional
Probab=91.75 E-value=1.2 Score=50.50 Aligned_cols=117 Identities=19% Similarity=0.183 Sum_probs=78.1
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCceEee-ehHHHHHhhHHHHHHhcccCCCeEEEEecCCCC-CCCC-CCCCCChhh
Q 006816 366 RNIRYGVREHAMAGISNGVALHGGGLIPFAA-TFLIFSDYMKNSIRLSALSHAGVIYILTHDSIG-LGED-GPTHQPVEQ 442 (630)
Q Consensus 366 R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~-~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~-~g~~-G~tHq~~~d 442 (630)
|++.+ ..|++++.+|.|+|..- |...++. +..+=+..++..|.++...+.||+++....... .+.+ +..||.+++
T Consensus 43 ~~i~~-~hE~~A~~~A~gyar~t-g~~~v~~~t~GpG~~N~~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~ 120 (544)
T PRK07064 43 RFVPA-RGEAGAVNMADAHARVS-GGLGVALTSTGTGAGNAAGALVEALTAGTPLLHITGQIETPYLDQDLGYIHEAPDQ 120 (544)
T ss_pred cEEee-ccHHHHHHHHHHHHHhc-CCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEeCCCCcccccCCCcccccccCH
Confidence 55554 78999999999999865 2444443 455544556677777778899999985221211 2332 245776788
Q ss_pred hHHhhcCCCcEEEecCChHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 006816 443 LAGLRAVPRLLAFRPADGNETAGSYRVAIA----NRDVPSVIALSRQ 485 (630)
Q Consensus 443 ~a~l~~iP~l~v~~P~d~~e~~~~l~~a~~----~~~~P~~ir~~r~ 485 (630)
..+++.+-.. .+...++.++..+++.|++ .+++|++|-+|..
T Consensus 121 ~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d 166 (544)
T PRK07064 121 LTMLRAVSKA-AFRVRSAETALATIREAVRVALTAPTGPVSVEIPID 166 (544)
T ss_pred HHHhhhhcce-EEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEeCHh
Confidence 8889877653 3444567777766666654 3479999999975
No 198
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=91.74 E-value=2.1 Score=40.59 Aligned_cols=117 Identities=11% Similarity=-0.020 Sum_probs=69.2
Q ss_pred CCCCCcccccc--chHHHHHHHHHHHhcCCCCceEeee--hHHHHHhhHHHHHHhcccCCCeEEEEecC-CCCCCC---C
Q 006816 362 SPWGRNIRYGV--REHAMAGISNGVALHGGGLIPFAAT--FLIFSDYMKNSIRLSALSHAGVIYILTHD-SIGLGE---D 433 (630)
Q Consensus 362 ~~p~R~~~~gI--aE~~~vg~a~GlA~~G~~~~pv~~~--~~~F~~~a~dqi~~~a~~~~pv~~v~~~~-g~~~g~---~ 433 (630)
..|.+++..+. +=...+++|.|.++.. +-+|++++ -..|.. ....+..++..++|++++.... +++.-. .
T Consensus 36 ~~p~~~~~~~~~g~mG~~lp~AiGa~la~-~~~~vv~i~GDG~f~~-~~~el~ta~~~~lpv~ivv~NN~~~~~~~~~~~ 113 (172)
T cd02004 36 RKPRHRLDAGTFGTLGVGLGYAIAAALAR-PDKRVVLVEGDGAFGF-SGMELETAVRYNLPIVVVVGNNGGWYQGLDGQQ 113 (172)
T ss_pred cCCCcEecCCCCCcccchHHHHHHHHHhC-CCCeEEEEEcchhhcC-CHHHHHHHHHcCCCEEEEEEECcccccchhhhh
Confidence 44788887653 1233455677777765 34666664 455553 2344555677899987777454 333211 0
Q ss_pred ----CCCC----CChhhhH-HhhcCCCcEEEecCChHHHHHHHHHHHHcCCCcEEEEE
Q 006816 434 ----GPTH----QPVEQLA-GLRAVPRLLAFRPADGNETAGSYRVAIANRDVPSVIAL 482 (630)
Q Consensus 434 ----G~tH----q~~~d~a-~l~~iP~l~v~~P~d~~e~~~~l~~a~~~~~~P~~ir~ 482 (630)
+..+ ....|.+ +.+++ |+..+.-.+..|++.+++.++.. ++|++|-+
T Consensus 114 ~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~al~~a~~~-~~p~liev 169 (172)
T cd02004 114 LSYGLGLPVTTLLPDTRYDLVAEAF-GGKGELVTTPEELKPALKRALAS-GKPALINV 169 (172)
T ss_pred hhccCCCceeccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHHc-CCCEEEEE
Confidence 0000 0112222 33333 56677777999999999999986 89998854
No 199
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=91.39 E-value=2.5 Score=39.21 Aligned_cols=116 Identities=20% Similarity=0.106 Sum_probs=70.1
Q ss_pred CCCCCcccc--ccchHHHHHHHHHHHhcCCCCceEeee--hHHHHHhhHHHHHHhcccCCCeEEEEecCC-CCC------
Q 006816 362 SPWGRNIRY--GVREHAMAGISNGVALHGGGLIPFAAT--FLIFSDYMKNSIRLSALSHAGVIYILTHDS-IGL------ 430 (630)
Q Consensus 362 ~~p~R~~~~--gIaE~~~vg~a~GlA~~G~~~~pv~~~--~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g-~~~------ 430 (630)
..|.||+.. .=+=...++.|.|.++..+ -++++.+ -.+|+.. ...|..+...++|++++.-..+ ++.
T Consensus 16 ~~p~~~~~~~~~g~mG~~~~~aiGa~~a~p-~~~vv~i~GDG~f~~~-~~el~ta~~~~~~v~~vv~nN~~~~~~~~~~~ 93 (153)
T PF02775_consen 16 RRPRRFLTSGGFGSMGYALPAAIGAALARP-DRPVVAITGDGSFLMS-LQELATAVRYGLPVVIVVLNNGGYGMTGGQQT 93 (153)
T ss_dssp SSTTEEEESTTTT-TTTHHHHHHHHHHHST-TSEEEEEEEHHHHHHH-GGGHHHHHHTTSSEEEEEEESSBSHHHHHHHH
T ss_pred CCCCeEEcCCCccccCCHHHhhhHHHhhcC-cceeEEecCCcceeec-cchhHHHhhccceEEEEEEeCCcceEeccccc
Confidence 347888763 2234556677888877642 4555543 6777655 4445566667889877764443 321
Q ss_pred --CC------CCCCCCChhhhHHhhcCCCcEEEecC--ChHHHHHHHHHHHHcCCCcEEEE
Q 006816 431 --GE------DGPTHQPVEQLAGLRAVPRLLAFRPA--DGNETAGSYRVAIANRDVPSVIA 481 (630)
Q Consensus 431 --g~------~G~tHq~~~d~a~l~~iP~l~v~~P~--d~~e~~~~l~~a~~~~~~P~~ir 481 (630)
+. ++.+.+.+.-..+.+++ |+..+.=. |..|++..++++++. ++|++|-
T Consensus 94 ~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~~~el~~al~~a~~~-~gp~vIe 152 (153)
T PF02775_consen 94 PFGGGRFSGVDGKTFPNPDFAALAEAF-GIKGARVTTPDPEELEEALREALES-GGPAVIE 152 (153)
T ss_dssp HTTSTCHHSTBTTTSTTCGHHHHHHHT-TSEEEEESCHSHHHHHHHHHHHHHS-SSEEEEE
T ss_pred cCcCcccccccccccccCCHHHHHHHc-CCcEEEEccCCHHHHHHHHHHHHhC-CCcEEEE
Confidence 10 11112223333444444 67766644 459999999999987 9999984
No 200
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=91.37 E-value=1.3 Score=50.78 Aligned_cols=116 Identities=15% Similarity=0.135 Sum_probs=80.0
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCceEee-ehHHHHHhhHHHHHHhcccCCCeEEEEecCCCC-CCCCCCCCCChhhh
Q 006816 366 RNIRYGVREHAMAGISNGVALHGGGLIPFAA-TFLIFSDYMKNSIRLSALSHAGVIYILTHDSIG-LGEDGPTHQPVEQL 443 (630)
Q Consensus 366 R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~-~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~-~g~~G~tHq~~~d~ 443 (630)
|++.+ -.|++++.+|.|+|..- |...++. ++.+=+..+..-|.++-..+.||+++....... .+. ..+|.++..
T Consensus 44 ~~i~~-rhE~~A~~mAdgYar~t-g~~gv~~~t~GPG~~n~l~gi~~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~~ 119 (574)
T PRK07979 44 DHVLV-RHEQAAVHMADGLARAT-GEVGVVLVTSGPGATNAITGIATAYMDSIPLVVLSGQVATSLIGY--DAFQECDMV 119 (574)
T ss_pred eEEEe-CcHHHHHHHHHHHHHHh-CCceEEEECCCccHhhhHHHHHHHhhcCCCEEEEECCCChhccCC--CCCceecHH
Confidence 55554 77999999999999763 2556654 466666667777777777899999986322222 232 246767777
Q ss_pred HHhhcCCCcEEEecCChHHHHHHHHHHHHc----CCCcEEEEEcCCC
Q 006816 444 AGLRAVPRLLAFRPADGNETAGSYRVAIAN----RDVPSVIALSRQK 486 (630)
Q Consensus 444 a~l~~iP~l~v~~P~d~~e~~~~l~~a~~~----~~~P~~ir~~r~~ 486 (630)
++++.+=.. .+...++.++..+++.|++. +.+|+||.+|+.-
T Consensus 120 ~l~~~~tk~-~~~v~~~~~~~~~l~~A~~~A~~~~~GPv~l~iP~Dv 165 (574)
T PRK07979 120 GISRPVVKH-SFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDLPKDI 165 (574)
T ss_pred HHhhcccce-EEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChhh
Confidence 888876552 33445788888877777652 4699999998753
No 201
>PRK05858 hypothetical protein; Provisional
Probab=91.37 E-value=1.3 Score=50.36 Aligned_cols=116 Identities=11% Similarity=0.005 Sum_probs=78.3
Q ss_pred CCccccccchHHHHHHHHHHHhcCCCCceEee--ehHHHHHhhHHHHHHhcccCCCeEEEEecCCCCCCCCCCCCCChhh
Q 006816 365 GRNIRYGVREHAMAGISNGVALHGGGLIPFAA--TFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQ 442 (630)
Q Consensus 365 ~R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~--~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~~g~~G~tHq~~~d 442 (630)
=|++.+ .-|++++.+|-|+|... -+|-+. +..+=+..+..-|.++...+.||+++........ .+-.++|.++.
T Consensus 43 i~~i~~-rhE~~A~~~AdGyar~t--g~~gv~~~t~GpG~~n~~~~i~~A~~~~~Pvl~i~g~~~~~~-~~~~~~q~~d~ 118 (542)
T PRK05858 43 IRLIDV-RHEQTAAFAAEAWAKLT--RVPGVAVLTAGPGVTNGMSAMAAAQFNQSPLVVLGGRAPALR-WGMGSLQEIDH 118 (542)
T ss_pred CCEEee-ccHHHHHHHHHHHHHhc--CCCeEEEEcCCchHHHHHHHHHHHHhcCCCEEEEeCCCCccc-CCCCCCcccch
Confidence 466665 78999999999999985 344443 3444344566677777788999998852222221 12234777888
Q ss_pred hHHhhcCCCcEEEecCChHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 006816 443 LAGLRAVPRLLAFRPADGNETAGSYRVAIA----NRDVPSVIALSRQ 485 (630)
Q Consensus 443 ~a~l~~iP~l~v~~P~d~~e~~~~l~~a~~----~~~~P~~ir~~r~ 485 (630)
.++++.+-- -.....++.++...++.|++ ...+|++|-+|+.
T Consensus 119 ~~l~~~~tk-~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 164 (542)
T PRK05858 119 VPFVAPVTK-FAATAQSAENAGRLVDQALQAAVTPHRGPVFVDFPMD 164 (542)
T ss_pred hhhhhhhhc-eEEEeCCHHHHHHHHHHHHHHHcCCCCCeEEEEcChh
Confidence 888888765 34455667777777666653 3468999999875
No 202
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=91.27 E-value=2.3 Score=44.23 Aligned_cols=108 Identities=11% Similarity=0.113 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHhc----CCCCceEeee--hHHHHHhhHHHHHHhcccCCCeEEEEecCCCCCCCCCCC------------
Q 006816 375 HAMAGISNGVALH----GGGLIPFAAT--FLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPT------------ 436 (630)
Q Consensus 375 ~~~vg~a~GlA~~----G~~~~pv~~~--~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~~g~~G~t------------ 436 (630)
.+.+++|.|++.. ++ -++|+.+ -.+|.+-.+..+-+++..+.++++++-..+. ++.-|.+
T Consensus 72 g~~~a~a~Gi~~a~~~~~~-~~~Vv~~~GDG~~~dIG~~~L~~a~~r~~ni~~ivlDNe~-Y~nTGgQ~S~~Tp~Ga~t~ 149 (299)
T PRK11865 72 ENAAAVASGIERAVKALGK-KVNVVAIGGDGGTADIGFQSLSGAMERGHNILYLMYDNEA-YMNTGIQRSGSTPFGASTT 149 (299)
T ss_pred cchHHHHHHHHHHHHHhcC-CCeEEEEeCCchHhhccHHHHHHHHHcCCCeEEEEECCcc-ccCCCCCCCCCCCCCcccc
Confidence 4566777777654 41 2344443 5788888888888888888898887633333 2211111
Q ss_pred --------------CCChhhhHHhhcCCCcEEEecCChHHHHHHHHHHHHcCCCcEEEEEcCC
Q 006816 437 --------------HQPVEQLAGLRAVPRLLAFRPADGNETAGSYRVAIANRDVPSVIALSRQ 485 (630)
Q Consensus 437 --------------Hq~~~d~a~l~~iP~l~v~~P~d~~e~~~~l~~a~~~~~~P~~ir~~r~ 485 (630)
.-.+..++.-...|-+....|+++.|+...++.|++. ++|.+|..-..
T Consensus 150 tsp~Gk~~~G~~~~kkd~~~Ia~a~g~~YVA~~~~~~~~~l~~~i~~A~~~-~Gps~I~v~sP 211 (299)
T PRK11865 150 TSPAGKYSRGEDRPKKNMPLIMAAHGIPYVATASIGYPEDFMEKVKKAKEV-EGPAYIQVLQP 211 (299)
T ss_pred cCCCCcccCCCCCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHhC-CCCEEEEEECC
Confidence 1123444444677778889999999999999999997 99999975443
No 203
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=91.22 E-value=0.8 Score=52.48 Aligned_cols=116 Identities=14% Similarity=0.113 Sum_probs=77.5
Q ss_pred CCccccccchHHHHHHHHHHHhcCCCCceEee--ehHHHHHhhHHHHHHhcccCCCeEEEEecCCCCCCCCCCCCCChhh
Q 006816 365 GRNIRYGVREHAMAGISNGVALHGGGLIPFAA--TFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQ 442 (630)
Q Consensus 365 ~R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~--~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~~g~~G~tHq~~~d 442 (630)
=|++.+ .-|++++.+|.|+|..- -+|-+. +-.+-+..++.-|.++...+.||+++....... ..+-..+|.++.
T Consensus 50 i~~v~~-rhE~~A~~~Adgyar~t--g~~gv~~~t~GpG~~N~~~gl~~A~~~~~Pvl~I~G~~~~~-~~~~~~~Q~~d~ 125 (578)
T PRK06112 50 IRQIAY-RTENAGGAMADGYARVS--GKVAVVTAQNGPAATLLVAPLAEALKASVPIVALVQDVNRD-QTDRNAFQELDH 125 (578)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHHh--CCCEEEEeCCCCcHHHHHHHHHHHhhcCCCEEEEecCCccc-cCCCCCccccCh
Confidence 456665 68999999999999865 344443 455666677777877778899999985222222 112234777888
Q ss_pred hHHhhcCCCcEEEecCChHHHHHHHHHHH----HcCCCcEEEEEcCC
Q 006816 443 LAGLRAVPRLLAFRPADGNETAGSYRVAI----ANRDVPSVIALSRQ 485 (630)
Q Consensus 443 ~a~l~~iP~l~v~~P~d~~e~~~~l~~a~----~~~~~P~~ir~~r~ 485 (630)
..+++.+--. .+...++.++...++.|+ ....+|++|-+|..
T Consensus 126 ~~l~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~D 171 (578)
T PRK06112 126 IALFQSCTKW-VRRVTVAERIDDYVDQAFTAATSGRPGPVVLLLPAD 171 (578)
T ss_pred hhhhccccce-EEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEcCHh
Confidence 8888887653 234455566655555554 43468999999865
No 204
>PRK07524 hypothetical protein; Provisional
Probab=91.19 E-value=1.4 Score=49.92 Aligned_cols=117 Identities=15% Similarity=0.125 Sum_probs=79.1
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCceEee-ehHHHHHhhHHHHHHhcccCCCeEEEEecCCCC-CCCC-CCCCCChhh
Q 006816 366 RNIRYGVREHAMAGISNGVALHGGGLIPFAA-TFLIFSDYMKNSIRLSALSHAGVIYILTHDSIG-LGED-GPTHQPVEQ 442 (630)
Q Consensus 366 R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~-~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~-~g~~-G~tHq~~~d 442 (630)
|++.+ -.|++++.+|-|+|..- |...++. +..+=+..+..-|.++...+.||+++....... .+.+ +..|+.+..
T Consensus 41 ~~i~~-~hE~~A~~mAdgyar~t-g~~gv~~~t~GpG~~n~~~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~~~~~~~d~ 118 (535)
T PRK07524 41 RHVTP-RHEQGAGFMADGYARVS-GKPGVCFIITGPGMTNIATAMGQAYADSIPMLVISSVNRRASLGKGRGKLHELPDQ 118 (535)
T ss_pred cEEEe-ccHHHHHHHHHHHHHHh-CCCeEEEECCCccHHHHHHHHHHHHhcCCCEEEEeCCCChhhcCCCCccccccccH
Confidence 55655 78999999999999865 2333443 444444456666777777899999885222221 3332 355665677
Q ss_pred hHHhhcCCCcEEEecCChHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 006816 443 LAGLRAVPRLLAFRPADGNETAGSYRVAIA----NRDVPSVIALSRQ 485 (630)
Q Consensus 443 ~a~l~~iP~l~v~~P~d~~e~~~~l~~a~~----~~~~P~~ir~~r~ 485 (630)
.++++.+=- -.+...++.++...++.|++ ...+|++|-+|+.
T Consensus 119 ~~l~~~~tk-~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 164 (535)
T PRK07524 119 RAMVAGVAA-FSHTLMSAEDLPEVLARAFAVFDSARPRPVHIEIPLD 164 (535)
T ss_pred HHHhhhhce-eEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEEeCHh
Confidence 788887754 44566677777777777664 3469999999975
No 205
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=91.19 E-value=5.4 Score=41.50 Aligned_cols=111 Identities=15% Similarity=0.102 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHhc----CCCCceEeee--hHHHHHhhHHHHHHhcccCCCeEEEEecCCCCCCC----------------
Q 006816 375 HAMAGISNGVALH----GGGLIPFAAT--FLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGE---------------- 432 (630)
Q Consensus 375 ~~~vg~a~GlA~~----G~~~~pv~~~--~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~~g~---------------- 432 (630)
.+..++|.|++.. |.+-..|+.. -.+|.+-.++.+-+++..++||++++-........
T Consensus 72 G~~~~~A~G~a~A~~~~~~~~~~Vva~~GDG~~~~~g~~~l~~A~~~~~~v~~vv~dN~~~~~TGgQ~S~~Tp~ga~t~t 151 (300)
T PRK11864 72 AATAAVASGIEEALKARGEKGVIVVGWAGDGGTADIGFQALSGAAERNHDILYIMYDNEAYMNTGIQRSSSTPYGAWTTT 151 (300)
T ss_pred hChHHHHHHHHHHHHhhCCCCcEEEEEEccCccccccHHHHHHHHHhCcCEEEEEECCeeeecCCCCCCCCCcCCCcccc
Confidence 3344455555443 1113445532 56777767777877889999999987443332111
Q ss_pred --CCCC--CCChhhhHHhhcCCCcEEEecCChHHHHHHHHHHHHcCCCcEEEEEcCCC
Q 006816 433 --DGPT--HQPVEQLAGLRAVPRLLAFRPADGNETAGSYRVAIANRDVPSVIALSRQK 486 (630)
Q Consensus 433 --~G~t--Hq~~~d~a~l~~iP~l~v~~P~d~~e~~~~l~~a~~~~~~P~~ir~~r~~ 486 (630)
.|.. .-.+..++.-..+|-+....|+++.++...++.|++. ++|.+|..-...
T Consensus 152 sp~G~~~~kkdi~~i~~a~g~~yVA~~~~~~~~~~~~~i~~A~~~-~Gps~I~~~spC 208 (300)
T PRK11864 152 TPGGKREHKKPVPDIMAAHKVPYVATASIAYPEDFIRKLKKAKEI-RGFKFIHLLAPC 208 (300)
T ss_pred CCCCCcCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHhC-CCCEEEEEeCCC
Confidence 1111 1123445555567778899999999999999999997 999999765443
No 206
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=91.02 E-value=1.4 Score=50.27 Aligned_cols=116 Identities=12% Similarity=0.048 Sum_probs=78.6
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCceEee-ehHHHHHhhHHHHHHhcccCCCeEEEEecCCCCCCCCCCCCCChhhhH
Q 006816 366 RNIRYGVREHAMAGISNGVALHGGGLIPFAA-TFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQLA 444 (630)
Q Consensus 366 R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~-~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~~g~~G~tHq~~~d~a 444 (630)
|++.+ -.|++++.+|.|+|..- |...++. ++.+=+..+..-|.++...+.||+++. .+.-........+|.++..+
T Consensus 41 ~~i~~-~hE~~A~~~Adgyar~t-g~~gv~~~t~GpG~~n~l~~i~~A~~~~~Pvl~i~-g~~~~~~~~~~~~q~~d~~~ 117 (558)
T TIGR00118 41 EHILV-RHEQGAAHAADGYARAS-GKVGVVLVTSGPGATNLVTGIATAYMDSIPMVVFT-GQVPTSLIGSDAFQEADILG 117 (558)
T ss_pred eEEEe-CcHHHHHHHHHHHHHHh-CCCEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe-cCCCccccCCCCCcccChhh
Confidence 66665 78999999999999765 2344433 455544556677777778899999985 22222211223477777778
Q ss_pred HhhcCCCcEEEecCChHHHHHHHHHHHHc----CCCcEEEEEcCC
Q 006816 445 GLRAVPRLLAFRPADGNETAGSYRVAIAN----RDVPSVIALSRQ 485 (630)
Q Consensus 445 ~l~~iP~l~v~~P~d~~e~~~~l~~a~~~----~~~P~~ir~~r~ 485 (630)
+++.+=-.... ..++.++..+++.|++. ..+|+||-+|+.
T Consensus 118 ~~~~~tk~~~~-v~~~~~~~~~v~~A~~~A~~~~~GPV~i~iP~d 161 (558)
T TIGR00118 118 ITMPITKHSFQ-VKSAEDIPRIIKEAFHIATTGRPGPVLVDLPKD 161 (558)
T ss_pred hhcCccceeEE-eCCHHHHHHHHHHHHHHHhcCCCCeEEEEcChh
Confidence 88876554333 45678888777777653 368999999975
No 207
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=91.02 E-value=1.3 Score=50.80 Aligned_cols=116 Identities=16% Similarity=0.142 Sum_probs=78.1
Q ss_pred CCccccccchHHHHHHHHHHHhcCCCCceEee-ehHHHHHhhHHHHHHhcccCCCeEEEEecCCCC-CCCCCCCCCChhh
Q 006816 365 GRNIRYGVREHAMAGISNGVALHGGGLIPFAA-TFLIFSDYMKNSIRLSALSHAGVIYILTHDSIG-LGEDGPTHQPVEQ 442 (630)
Q Consensus 365 ~R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~-~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~-~g~~G~tHq~~~d 442 (630)
=|++.+ -.|++++.+|-|+|... |...++. ++.+=+..+..-|.++...+.||+++....... .+. ..||.++.
T Consensus 43 i~~i~~-rhE~~A~~mAdgyar~t-g~~gv~~vt~GPG~~N~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~ 118 (574)
T PRK06466 43 VEHILV-RHEQAATHMADGYARAT-GKTGVVLVTSGPGATNAITGIATAYMDSIPMVVLSGQVPSTLIGE--DAFQETDM 118 (574)
T ss_pred ceEEEe-CcHHHHHHHHHHHHHHh-CCCEEEEECCCccHHHHHHHHHHHHhcCCCEEEEecCCCccccCC--Ccccccch
Confidence 356655 88999999999999865 2334443 455544556677777778899999986322222 222 24787888
Q ss_pred hHHhhcCCCcEEEecCChHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 006816 443 LAGLRAVPRLLAFRPADGNETAGSYRVAIA----NRDVPSVIALSRQ 485 (630)
Q Consensus 443 ~a~l~~iP~l~v~~P~d~~e~~~~l~~a~~----~~~~P~~ir~~r~ 485 (630)
..+++.+--. .+...++.++..+++.|++ .+.+|++|-+|+.
T Consensus 119 ~~l~~~itk~-s~~v~~~~~~~~~~~rA~~~A~~~~~GPV~l~iP~D 164 (574)
T PRK06466 119 VGISRPIVKH-SFMVKHASEIPEIIKKAFYIAQSGRPGPVVVDIPKD 164 (574)
T ss_pred hhhhhcccee-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 8888887664 3344566666666666553 3469999999976
No 208
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=90.92 E-value=1.4 Score=50.31 Aligned_cols=116 Identities=14% Similarity=0.035 Sum_probs=78.6
Q ss_pred CCccccccchHHHHHHHHHHHhcCCCCceEe-eehHHHHHhhHHHHHHhcccCCCeEEEEecCCCC-CCCCCCCCCChhh
Q 006816 365 GRNIRYGVREHAMAGISNGVALHGGGLIPFA-ATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIG-LGEDGPTHQPVEQ 442 (630)
Q Consensus 365 ~R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~-~~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~-~g~~G~tHq~~~d 442 (630)
=|++.+ ..|++++.+|.|+|... |...++ .+..+=+..+..-|.++-..+.||+++....... .+. + .+|.+..
T Consensus 47 i~~v~~-rhE~~A~~~Adgyar~t-g~~gv~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~g~~~~~~~~~-~-~~q~~d~ 122 (557)
T PRK08199 47 IRVIVC-RQEGGAAMMAEAYGKLT-GRPGICFVTRGPGATNASIGVHTAFQDSTPMILFVGQVARDFRER-E-AFQEIDY 122 (557)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHhc-CCCEEEEeCCCccHHHHHHHHHHHhhcCCCEEEEecCCccccCCC-C-cccccCH
Confidence 356555 78999999999999876 233333 3466666667777777778899999985222221 232 2 3677888
Q ss_pred hHHhhcCCCcEEEecCChHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 006816 443 LAGLRAVPRLLAFRPADGNETAGSYRVAIA----NRDVPSVIALSRQ 485 (630)
Q Consensus 443 ~a~l~~iP~l~v~~P~d~~e~~~~l~~a~~----~~~~P~~ir~~r~ 485 (630)
.++++.+=..... ..++.++..+++.|++ ...+|++|-+|+.
T Consensus 123 ~~l~~~~tk~~~~-v~~~~~~~~~~~~A~~~A~~~~~GPV~l~iP~d 168 (557)
T PRK08199 123 RRMFGPMAKWVAE-IDDAARIPELVSRAFHVATSGRPGPVVLALPED 168 (557)
T ss_pred HHhhhhhhceeee-cCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 8888877654333 3567777776666654 3468999999865
No 209
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=90.83 E-value=7.9 Score=36.93 Aligned_cols=101 Identities=16% Similarity=0.073 Sum_probs=55.6
Q ss_pred HHHHHHHhcCCCCceEeee--hHHHHHhhHHHHHHhcccCCCeEEEEecCCCCCCCCCCC-----------C-CChhhhH
Q 006816 379 GISNGVALHGGGLIPFAAT--FLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPT-----------H-QPVEQLA 444 (630)
Q Consensus 379 g~a~GlA~~G~~~~pv~~~--~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~~g~~G~t-----------H-q~~~d~a 444 (630)
+.|.|+++.. +-++++.+ -..|+...+..|..+...++|++++.-..+. +|.-+.. . ...+-..
T Consensus 58 ~~AiGa~la~-p~~~Vv~i~GDG~f~~~g~~eL~ta~~~~l~i~vvV~nN~~-~g~~~~~~~~~~~~~~~~~~~~~d~~~ 135 (178)
T cd02008 58 GVAIGMAKAS-EDKKVVAVIGDSTFFHSGILGLINAVYNKANITVVILDNRT-TAMTGGQPHPGTGKTLTEPTTVIDIEA 135 (178)
T ss_pred HHHhhHHhhC-CCCCEEEEecChHHhhccHHHHHHHHHcCCCEEEEEECCcc-eeccCCCCCCCCcccccCCCCccCHHH
Confidence 3566666654 24566654 5667544455566667779998777644442 2221111 1 1111222
Q ss_pred HhhcCCCcEEEecC---ChHHHHHHHHHHHHcCCCcEEEEEc
Q 006816 445 GLRAVPRLLAFRPA---DGNETAGSYRVAIANRDVPSVIALS 483 (630)
Q Consensus 445 ~l~~iP~l~v~~P~---d~~e~~~~l~~a~~~~~~P~~ir~~ 483 (630)
+.+++ |+..+... +-.++...++.+++. ++|++|...
T Consensus 136 ~a~a~-G~~~~~v~~~~~l~~~~~al~~a~~~-~gp~lI~v~ 175 (178)
T cd02008 136 LVRAI-GVKRVVVVDPYDLKAIREELKEALAV-PGVSVIIAK 175 (178)
T ss_pred HHHHC-CCCEEEecCccCHHHHHHHHHHHHhC-CCCEEEEEe
Confidence 33333 44444444 444445888999886 899988653
No 210
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=90.68 E-value=1.5 Score=50.16 Aligned_cols=115 Identities=18% Similarity=0.149 Sum_probs=78.2
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCceEee-ehHHHHHhhHHHHHHhcccCCCeEEEEecCCCC-CCCCCCCCCChhhh
Q 006816 366 RNIRYGVREHAMAGISNGVALHGGGLIPFAA-TFLIFSDYMKNSIRLSALSHAGVIYILTHDSIG-LGEDGPTHQPVEQL 443 (630)
Q Consensus 366 R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~-~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~-~g~~G~tHq~~~d~ 443 (630)
|++.+ .-|++++.+|.|+|..- |...++. ++.+=+..++.-|.++-..+.||+++....... .+. + .+|.+...
T Consensus 45 ~~i~~-rhE~~A~~~Adgyar~t-g~~gv~~~t~GpG~~N~l~gi~~A~~~~~Pvl~i~G~~~~~~~~~-~-~~q~~d~~ 120 (572)
T PRK06456 45 RHVLM-RHEQAAAHAADGYARAS-GVPGVCTATSGPGTTNLVTGLITAYWDSSPVIAITGQVPRSVMGK-M-AFQEADAM 120 (572)
T ss_pred eEEEe-CcHHHHHHHHHHHHHhh-CCCEEEEeCCCCCHHHHHHHHHHHHhhCCCEEEEecCCCccccCC-C-Cccccchh
Confidence 45554 77999999999999864 2444443 567766677777887778899999985222222 232 2 35667777
Q ss_pred HHhhcCCCcEEEecCChHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 006816 444 AGLRAVPRLLAFRPADGNETAGSYRVAIA----NRDVPSVIALSRQ 485 (630)
Q Consensus 444 a~l~~iP~l~v~~P~d~~e~~~~l~~a~~----~~~~P~~ir~~r~ 485 (630)
++++.+--...-. .++.++..+++.|++ .+.+|++|-+|+.
T Consensus 121 ~i~~~~tk~~~~v-~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 165 (572)
T PRK06456 121 GVFENVTKYVIGI-KRIDEIPQWIKNAFYIATTGRPGPVVIDIPRD 165 (572)
T ss_pred hhhhccceeEEEe-CCHHHHHHHHHHHHHHHhcCCCCcEEEecChh
Confidence 8888776654443 566777776666654 3469999999865
No 211
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=90.65 E-value=5.1 Score=41.49 Aligned_cols=110 Identities=14% Similarity=0.041 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHhcCCCCceEeee--hHHHHHhhHHHHHHhcccCCCeEEEEecC-CCC-C-CCCCC----------CCCC
Q 006816 375 HAMAGISNGVALHGGGLIPFAAT--FLIFSDYMKNSIRLSALSHAGVIYILTHD-SIG-L-GEDGP----------THQP 439 (630)
Q Consensus 375 ~~~vg~a~GlA~~G~~~~pv~~~--~~~F~~~a~dqi~~~a~~~~pv~~v~~~~-g~~-~-g~~G~----------tHq~ 439 (630)
...+++|.|+++.. +-++|+.+ -.++++.....+..++..++|++++.-.. +++ . +...+ +.++
T Consensus 72 G~alpaAiGaklA~-Pd~~VV~i~GDG~~f~mg~~eL~tA~r~nl~i~vIV~NN~~yGmt~~q~s~tt~~g~~~~~~~~g 150 (286)
T PRK11867 72 GRALAIATGLKLAN-PDLTVIVVTGDGDALAIGGNHFIHALRRNIDITYILFNNQIYGLTKGQYSPTSPVGFVTKTTPYG 150 (286)
T ss_pred hcHHHHHHHHHHhC-CCCcEEEEeCccHHHhCCHHHHHHHHHhCCCcEEEEEeCHHHhhhcCccCCCCCCCcccccccCC
Confidence 33455777777764 24555554 45445555566666777899988776443 232 1 11111 0011
Q ss_pred -----hhhhHHhhcCCC--cEEEecCChHHHHHHHHHHHHcCCCcEEEEEcCCC
Q 006816 440 -----VEQLAGLRAVPR--LLAFRPADGNETAGSYRVAIANRDVPSVIALSRQK 486 (630)
Q Consensus 440 -----~~d~a~l~~iP~--l~v~~P~d~~e~~~~l~~a~~~~~~P~~ir~~r~~ 486 (630)
..-.++..+... +......++.|+..+++.|+++ ++|++|-+-...
T Consensus 151 ~~~~~~d~~~lA~a~Ga~~va~~~~~~~~el~~al~~Al~~-~Gp~lIev~~~C 203 (286)
T PRK11867 151 SIEPPFNPVELALGAGATFVARGFDSDVKQLTELIKAAINH-KGFSFVEILQPC 203 (286)
T ss_pred CCCCCCCHHHHHHHCCCcEEEEecCCCHHHHHHHHHHHHhC-CCCEEEEEeCCC
Confidence 122333444433 3333688999999999999997 999999765443
No 212
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=90.39 E-value=1.4 Score=50.49 Aligned_cols=117 Identities=11% Similarity=0.040 Sum_probs=77.1
Q ss_pred CCCccccccchHHHHHHHHHHHhcCCCCceEee-ehHHHHHhhHHHHHHhcccCCCeEEEEecCCCC-CCCCCCCCCChh
Q 006816 364 WGRNIRYGVREHAMAGISNGVALHGGGLIPFAA-TFLIFSDYMKNSIRLSALSHAGVIYILTHDSIG-LGEDGPTHQPVE 441 (630)
Q Consensus 364 p~R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~-~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~-~g~~G~tHq~~~ 441 (630)
+-+++.+ .-|++++.+|.|+|... |...++. ++.+=+..++.-|.++-..+.||+++....... .+. ..+|.++
T Consensus 53 ~i~~i~~-~hE~~A~~~A~gyar~t-g~~gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~ItG~~~~~~~~~--~~~q~~d 128 (571)
T PRK07710 53 GIPHILT-RHEQGAIHAAEGYARIS-GKPGVVIATSGPGATNVVTGLADAMIDSLPLVVFTGQVATSVIGS--DAFQEAD 128 (571)
T ss_pred CCcEEEe-CCHHHHHHHHHHHHHHh-CCCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEeccCCccccCC--CCccccc
Confidence 4578866 89999999999999875 2333433 455444456666777777899999985211111 232 2366678
Q ss_pred hhHHhhcCCCcEEEecCChHHHHHHHHHHHHc----CCCcEEEEEcCC
Q 006816 442 QLAGLRAVPRLLAFRPADGNETAGSYRVAIAN----RDVPSVIALSRQ 485 (630)
Q Consensus 442 d~a~l~~iP~l~v~~P~d~~e~~~~l~~a~~~----~~~P~~ir~~r~ 485 (630)
..++++.+--... ...++.++..+++.|++. +.+|++|-+|..
T Consensus 129 ~~~l~~~~tk~~~-~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 175 (571)
T PRK07710 129 IMGITMPVTKHNY-QVRKASDLPRIIKEAFHIATTGRPGPVLIDIPKD 175 (571)
T ss_pred hhhhhhcccceEE-ecCCHHHHHHHHHHHHHHHhcCCCCcEEEEcChh
Confidence 8888887765433 345566666666666543 369999999974
No 213
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=90.28 E-value=1.4 Score=50.22 Aligned_cols=115 Identities=17% Similarity=0.081 Sum_probs=78.7
Q ss_pred CCccccccchHHHHHHHHHHHhcCCCCceE-ee-ehHHHHHhhHHHHHHhcccCCCeEEEEecCCCC-CCCCCCCCCChh
Q 006816 365 GRNIRYGVREHAMAGISNGVALHGGGLIPF-AA-TFLIFSDYMKNSIRLSALSHAGVIYILTHDSIG-LGEDGPTHQPVE 441 (630)
Q Consensus 365 ~R~~~~gIaE~~~vg~a~GlA~~G~~~~pv-~~-~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~-~g~~G~tHq~~~ 441 (630)
=|++. ..-|++++.+|.|+|..- -+|- +. ++.+=+..++.-|.++...+.||+++....... .+. ..+|.+.
T Consensus 52 i~~i~-~~hE~~A~~~Adgyar~t--g~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d 126 (564)
T PRK08155 52 IRHIL-ARHEQGAGFIAQGMARTT--GKPAVCMACSGPGATNLVTAIADARLDSIPLVCITGQVPASMIGT--DAFQEVD 126 (564)
T ss_pred ceEEE-eccHHHHHHHHHHHHHHc--CCCeEEEECCCCcHHHHHHHHHHHHhcCCCEEEEeccCCcccccC--CCccccc
Confidence 46777 489999999999999976 4553 33 455545566777777778899999985222222 232 3467777
Q ss_pred hhHHhhcCCCcEEEecCChHHHHHHHHHHHHc----CCCcEEEEEcCC
Q 006816 442 QLAGLRAVPRLLAFRPADGNETAGSYRVAIAN----RDVPSVIALSRQ 485 (630)
Q Consensus 442 d~a~l~~iP~l~v~~P~d~~e~~~~l~~a~~~----~~~P~~ir~~r~ 485 (630)
..++++.+--...-. .++.++..+++.|++. +.+|++|-+|+.
T Consensus 127 ~~~~~~~~tk~~~~v-~~~~~~~~~i~~A~~~a~~~~~GPV~i~iP~D 173 (564)
T PRK08155 127 TYGISIPITKHNYLV-RDIEELPQVISDAFRIAQSGRPGPVWIDIPKD 173 (564)
T ss_pred hhhhhhccceEEEEc-CCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 778888776543333 4677777777766653 369999999864
No 214
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=90.25 E-value=4.6 Score=38.45 Aligned_cols=116 Identities=20% Similarity=0.122 Sum_probs=67.1
Q ss_pred CCCCCcc-ccccch-HHHHHHHHHHHhcCCCCceEeee--hHHHHHhhHHHHHHhcccCCCeEEEEecCC-CCCCCCCCC
Q 006816 362 SPWGRNI-RYGVRE-HAMAGISNGVALHGGGLIPFAAT--FLIFSDYMKNSIRLSALSHAGVIYILTHDS-IGLGEDGPT 436 (630)
Q Consensus 362 ~~p~R~~-~~gIaE-~~~vg~a~GlA~~G~~~~pv~~~--~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g-~~~g~~G~t 436 (630)
..|.|++ +.|..- ...++.|.|.++.- -+|++.+ -..|..- ...+..+...++|++++.-..+ ++.=.....
T Consensus 39 ~~~~~~~~~~g~g~mG~~l~~aiGa~la~--~~~Vv~i~GDGsf~m~-~~eL~ta~~~~l~v~ivVlNN~~~g~~~~~~~ 115 (175)
T cd02009 39 DKTVRVFANRGASGIDGTLSTALGIALAT--DKPTVLLTGDLSFLHD-LNGLLLGKQEPLNLTIVVINNNGGGIFSLLPQ 115 (175)
T ss_pred CCCceEEecCCccchhhHHHHHHHHHhcC--CCCEEEEEehHHHHHh-HHHHHhccccCCCeEEEEEECCCCchheeccC
Confidence 4477887 544322 22445667766653 4666654 4566543 2335555666899877764443 331000000
Q ss_pred ---------C----CChhhhHHhhcCCCcEEEecCChHHHHHHHHHHHHcCCCcEEEEE
Q 006816 437 ---------H----QPVEQLAGLRAVPRLLAFRPADGNETAGSYRVAIANRDVPSVIAL 482 (630)
Q Consensus 437 ---------H----q~~~d~a~l~~iP~l~v~~P~d~~e~~~~l~~a~~~~~~P~~ir~ 482 (630)
. +...-.++.+++ |+..+.-.++.|++..|+.+++. ++|++|-+
T Consensus 116 ~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~-~~p~lIev 172 (175)
T cd02009 116 ASFEDEFERLFGTPQGLDFEHLAKAY-GLEYRRVSSLDELEQALESALAQ-DGPHVIEV 172 (175)
T ss_pred CcccchhhhhhcCCCCCCHHHHHHHc-CCCeeeCCCHHHHHHHHHHHHhC-CCCEEEEE
Confidence 0 011222333333 56677778999999999999986 89998854
No 215
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=90.14 E-value=3 Score=39.31 Aligned_cols=115 Identities=17% Similarity=0.100 Sum_probs=69.4
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCceEee-ehHHHHHhhHHHHHHhcccCCCeEEEEecCCCC-CCCCCCCCC-----
Q 006816 366 RNIRYGVREHAMAGISNGVALHGGGLIPFAA-TFLIFSDYMKNSIRLSALSHAGVIYILTHDSIG-LGEDGPTHQ----- 438 (630)
Q Consensus 366 R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~-~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~-~g~~G~tHq----- 438 (630)
|++. --.|++.+.+|.|++..- ...++. +-.+=+..+...|.++...+.||+++....... .+.....|+
T Consensus 37 ~~i~-~rhE~~A~~mA~gyar~t--~~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~ 113 (162)
T cd07038 37 RWVG-NCNELNAGYAADGYARVK--GLGALVTTYGVGELSALNGIAGAYAEHVPVVHIVGAPSTKAQASGLLLHHTLGDG 113 (162)
T ss_pred eEEe-eCCHHHHHHHHHHHHHhh--CCEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEecCCCccccccccceeeccccc
Confidence 4444 378999999999999875 333333 334434556667777777899999985222111 232222232
Q ss_pred Chh-hhHHhhcCCCcEEEecCChHHHHHHHHHHHHc---CCCcEEEEEcC
Q 006816 439 PVE-QLAGLRAVPRLLAFRPADGNETAGSYRVAIAN---RDVPSVIALSR 484 (630)
Q Consensus 439 ~~~-d~a~l~~iP~l~v~~P~d~~e~~~~l~~a~~~---~~~P~~ir~~r 484 (630)
.++ +.++++.+=.... ...++.++..+++.|++. .++|++|-+||
T Consensus 114 ~~~d~~~~~~~~tk~~~-~v~~~~~i~~~v~~A~~~a~s~~gPV~l~iP~ 162 (162)
T cd07038 114 DFDVFLKMFEEITCAAA-RLTDPENAAEEIDRVLRTALRESRPVYIEIPR 162 (162)
T ss_pred chHHHHHHHHhheeEEE-EeCCHHHHHHHHHHHHHHHHHCCCCEEEEccC
Confidence 233 4677777654333 334666666666655532 25899998876
No 216
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=90.08 E-value=3.7 Score=39.90 Aligned_cols=105 Identities=14% Similarity=0.025 Sum_probs=62.2
Q ss_pred HHHHHHHHHhcCCCCceEeee--hHHHHHhhHHHHHHhcccCCCeEEEEecCCCCCCCCCCCC--------------CC-
Q 006816 377 MAGISNGVALHGGGLIPFAAT--FLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTH--------------QP- 439 (630)
Q Consensus 377 ~vg~a~GlA~~G~~~~pv~~~--~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~~g~~G~tH--------------q~- 439 (630)
.++.|.|.++.. +-+|++.+ -..|.+.....+..+...++|++++.-..+. +|.-+..+ ++
T Consensus 56 glpaAiGa~la~-p~r~Vv~i~GDGs~f~m~~~eL~ta~~~~lpv~iiVlnN~~-yg~~~~~~~~~~~~~~~~~~~~~~~ 133 (193)
T cd03375 56 ALAVATGVKLAN-PDLTVIVVSGDGDLAAIGGNHFIHAARRNIDITVIVHNNQI-YGLTKGQASPTTPEGFKTKTTPYGN 133 (193)
T ss_pred HHHHHHHHHHhC-CCCeEEEEeccchHhhccHHHHHHHHHhCCCeEEEEEcCcc-cccCCCccCCCCCCCCcccCCCCCC
Confidence 344677776654 35667665 4555555556677777789998877644432 22111100 00
Q ss_pred ----hhhhHHhhcC--CCcEEEecCChHHHHHHHHHHHHcCCCcEEEEEcC
Q 006816 440 ----VEQLAGLRAV--PRLLAFRPADGNETAGSYRVAIANRDVPSVIALSR 484 (630)
Q Consensus 440 ----~~d~a~l~~i--P~l~v~~P~d~~e~~~~l~~a~~~~~~P~~ir~~r 484 (630)
.+-..+.+++ ++...+...++.|+...|+.+++. ++|++|-+..
T Consensus 134 ~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~al~~-~gp~vIev~~ 183 (193)
T cd03375 134 IEEPFNPLALALAAGATFVARGFSGDIKQLKEIIKKAIQH-KGFSFVEVLS 183 (193)
T ss_pred CCCCCCHHHHHHHCCCCEEEEEecCCHHHHHHHHHHHHhc-CCCEEEEEEC
Confidence 1111233333 222224689999999999999986 9999996543
No 217
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=90.06 E-value=1.6 Score=49.71 Aligned_cols=116 Identities=17% Similarity=-0.028 Sum_probs=74.6
Q ss_pred CCccccccchHHHHHHHHHHHhcCCCCceEee--ehHHHHHhhHHHHHHhcccCCCeEEEEecCCCCCCCCCCCCCChhh
Q 006816 365 GRNIRYGVREHAMAGISNGVALHGGGLIPFAA--TFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQ 442 (630)
Q Consensus 365 ~R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~--~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~~g~~G~tHq~~~d 442 (630)
=|++.+ --|++++.+|.|+|..- -+|-++ +..+=+.-++..|.++-..+.||+++....... ...-.++|.++.
T Consensus 40 i~~v~~-~hE~~A~~mAdgyar~t--gkpgv~~~t~GPG~~N~l~~l~~A~~~~~Pvl~i~G~~~~~-~~~~~~~q~~d~ 115 (549)
T PRK06457 40 VKYVQV-RHEEGAALAASVEAKIT--GKPSACMGTSGPGSIHLLNGLYDAKMDHAPVIALTGQVESD-MIGHDYFQEVNL 115 (549)
T ss_pred CeEEEe-CcHHHHHHHHHHHHHHh--CCCeEEEeCCCCchhhhHHHHHHHHhcCCCEEEEecCCCcc-ccCCCcccccch
Confidence 344443 78999999999999876 445543 344444556666777777899999985221111 111234677788
Q ss_pred hHHhhcCCCcEEEecCChHHHHHHHHHHHHc---CCCcEEEEEcCC
Q 006816 443 LAGLRAVPRLLAFRPADGNETAGSYRVAIAN---RDVPSVIALSRQ 485 (630)
Q Consensus 443 ~a~l~~iP~l~v~~P~d~~e~~~~l~~a~~~---~~~P~~ir~~r~ 485 (630)
..+++.+--. .+...++.++..+++.|++. ..+|++|-+|..
T Consensus 116 ~~l~~~vtk~-~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~D 160 (549)
T PRK06457 116 TKLFDDVAVF-NQILINPENAEYIIRRAIREAISKRGVAHINLPVD 160 (549)
T ss_pred hhhhccceeE-EEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeCHh
Confidence 8888877553 34455556666666555432 269999999965
No 218
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=90.01 E-value=1.5 Score=49.76 Aligned_cols=115 Identities=16% Similarity=0.081 Sum_probs=79.1
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCceEee-ehHHHHHhhHHHHHHhcccCCCeEEEEecCCCC-CCCCCCCCCChhhh
Q 006816 366 RNIRYGVREHAMAGISNGVALHGGGLIPFAA-TFLIFSDYMKNSIRLSALSHAGVIYILTHDSIG-LGEDGPTHQPVEQL 443 (630)
Q Consensus 366 R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~-~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~-~g~~G~tHq~~~d~ 443 (630)
|++.+ ..|++++.+|-|+|..- |...++. ++.+=+..++.-|.++-..+.||+++....... .+. ..+|.++..
T Consensus 40 ~~v~~-~hE~~A~~~Adgyar~s-g~~gv~~~t~GpG~~n~~~~l~~A~~~~~Pvl~i~g~~~~~~~~~--~~~q~~d~~ 115 (548)
T PRK08978 40 EHLLC-RHEQGAAMAAIGYARAT-GKVGVCIATSGPGATNLITGLADALLDSVPVVAITGQVSSPLIGT--DAFQEIDVL 115 (548)
T ss_pred eEEEe-ccHHHHHHHHHHHHHHh-CCCEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEecCCCccccCC--CCCcccchh
Confidence 55555 78999999999999875 2333333 455545566777777778899999985322222 232 237777888
Q ss_pred HHhhcCCCcEEEecCChHHHHHHHHHHHHc----CCCcEEEEEcCC
Q 006816 444 AGLRAVPRLLAFRPADGNETAGSYRVAIAN----RDVPSVIALSRQ 485 (630)
Q Consensus 444 a~l~~iP~l~v~~P~d~~e~~~~l~~a~~~----~~~P~~ir~~r~ 485 (630)
++++.+--..... .++.++..+++.|++. .++|++|-+|+.
T Consensus 116 ~~~~~~tk~~~~v-~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 160 (548)
T PRK08978 116 GLSLACTKHSFLV-QSLEELPEIMAEAFEIASSGRPGPVLVDIPKD 160 (548)
T ss_pred ccccCceeeEEEE-CCHHHHHHHHHHHHHHHhcCCCCcEEEecChh
Confidence 8888876655444 3677777777777653 469999999875
No 219
>PRK08322 acetolactate synthase; Reviewed
Probab=89.87 E-value=1.8 Score=49.23 Aligned_cols=115 Identities=14% Similarity=0.083 Sum_probs=77.4
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCceEee-ehHHHHHhhHHHHHHhcccCCCeEEEEecCCCC-CCCCCCCCCChhhh
Q 006816 366 RNIRYGVREHAMAGISNGVALHGGGLIPFAA-TFLIFSDYMKNSIRLSALSHAGVIYILTHDSIG-LGEDGPTHQPVEQL 443 (630)
Q Consensus 366 R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~-~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~-~g~~G~tHq~~~d~ 443 (630)
|++.+ ..|++++.+|.|+|..- |...++. +..+=+..++.-|.++...+.||+++....... .+. + .||.+...
T Consensus 40 ~~i~~-~hE~~A~~~A~gyar~t-g~~gv~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~g~~~~~~~~~-~-~~q~~d~~ 115 (547)
T PRK08322 40 KLILT-RHEQGAAFMAATYGRLT-GKAGVCLSTLGPGATNLVTGVAYAQLGGMPMVAITGQKPIKRSKQ-G-SFQIVDVV 115 (547)
T ss_pred cEEEe-ccHHHHHHHHHHHHHhh-CCCEEEEECCCccHhHHHHHHHHHhhcCCCEEEEeccccccccCC-C-ccccccHH
Confidence 55554 78999999999999875 2433433 344544556677777778899999985222211 232 2 37777777
Q ss_pred HHhhcCCCcEEEecCChHHHHHHHHHHHHc----CCCcEEEEEcCC
Q 006816 444 AGLRAVPRLLAFRPADGNETAGSYRVAIAN----RDVPSVIALSRQ 485 (630)
Q Consensus 444 a~l~~iP~l~v~~P~d~~e~~~~l~~a~~~----~~~P~~ir~~r~ 485 (630)
++++.+-. ..+...++.++..+++.|++. +.+|++|-+|+.
T Consensus 116 ~~~~~~tk-~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 160 (547)
T PRK08322 116 AMMAPLTK-WTRQIVSPDNIPEVVREAFRLAEEERPGAVHLELPED 160 (547)
T ss_pred HHhhhhee-EEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChh
Confidence 88887764 355566777777777666543 468999999875
No 220
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=89.72 E-value=1.4 Score=50.57 Aligned_cols=116 Identities=16% Similarity=0.146 Sum_probs=75.2
Q ss_pred CCccccccchHHHHHHHHHHHhcCCCCceEee-ehHHHHHhhHHHHHHhcccCCCeEEEEecCCCC-CCCCCCCCCChhh
Q 006816 365 GRNIRYGVREHAMAGISNGVALHGGGLIPFAA-TFLIFSDYMKNSIRLSALSHAGVIYILTHDSIG-LGEDGPTHQPVEQ 442 (630)
Q Consensus 365 ~R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~-~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~-~g~~G~tHq~~~d 442 (630)
=|++.+ --|++++.+|-|+|... |...++. ++.+=+..+..-|.++...+.||+++....... .+. .++|.+..
T Consensus 60 i~~i~~-rhE~~A~~~AdgYar~t-g~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~ 135 (587)
T PRK06965 60 IQHVLV-RHEQAAVHAADGYARAT-GKVGVALVTSGPGVTNAVTGIATAYMDSIPMVVISGQVPTAAIGQ--DAFQECDT 135 (587)
T ss_pred CeEEEe-CCHHHHHHHHHHHHHHh-CCCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEecCCCccccCC--CCcccccH
Confidence 467666 78999999999999875 2444443 455544556667777778899999986322222 232 23676777
Q ss_pred hHHhhcCCCcEEEecCChHHHHHHHHHH----HHcCCCcEEEEEcCC
Q 006816 443 LAGLRAVPRLLAFRPADGNETAGSYRVA----IANRDVPSVIALSRQ 485 (630)
Q Consensus 443 ~a~l~~iP~l~v~~P~d~~e~~~~l~~a----~~~~~~P~~ir~~r~ 485 (630)
.++++.+=-.. +...++.++..+++.| ...+.+|+||-+|+.
T Consensus 136 ~~l~~~itk~~-~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 181 (587)
T PRK06965 136 VGITRPIVKHN-FLVKDVRDLAETVKKAFYIARTGRPGPVVVDIPKD 181 (587)
T ss_pred HHHhcCCccee-EEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEeChh
Confidence 77887775433 3334555555555444 444469999999976
No 221
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=89.70 E-value=4.5 Score=38.63 Aligned_cols=105 Identities=22% Similarity=0.107 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHHHHHhhhhCCCCCccC-CceEEEEEcccccCc---hhHHHHHH-HhHHcCCCcEEEEEECCCCcccccc
Q 006816 108 GVANAVGLALAEAHLAARFNKPDAVVV-DHRTYCIMSDGCAME---GISHEAAA-LAAHWKLNKLTLIYDDNHNTIDGPT 182 (630)
Q Consensus 108 ~l~~AvG~A~a~k~~~~~~~~~~~~~~-~~~v~~~~GDG~~~e---G~~~eal~-~a~~~~L~~li~i~~~N~~~i~~~~ 182 (630)
.++.|.|+|++. + ...++... +.|.. -...+.+. .++..+++..+++-...+++.++.+
T Consensus 60 ~vg~a~GlA~~G--------------~~~~~~~~~f--~~F~~~~q~r~~~~~~~~~~~~~~~v~v~~~~g~~~~~~G~t 123 (178)
T PF02779_consen 60 MVGMAAGLALAG--------------GLRPPVESTF--ADFLTPAQIRAFDQIRNDMAYGQLPVPVGTRAGLGYGGDGGT 123 (178)
T ss_dssp HHHHHHHHHHHS--------------SSEEEEEEEE--GGGGGGGHHHHHHHHHHHHHHHTS-EEEEEEESGGGSTTGTT
T ss_pred ccceeeeeeecc--------------cccceeEeec--cccccccchhhhhhhhhhhhcccceecceeecCccccccccc
Confidence 467788888754 2 12333444 44443 24666666 6778888854333332334555544
Q ss_pred cccChhcHHHHHHhC-CCeEEEEeCCCCCHHHHHHHHHHHHhc-CCCcEEEEEe
Q 006816 183 SLVLSEDISARFKSL-GWNTIMVENIHDNLSSFKEALMAAANE-TKKPTFIRVK 234 (630)
Q Consensus 183 ~~~~~~~~~~~~~a~-G~~~~~v~dG~~d~~~l~~al~~a~~~-~~~P~~i~~~ 234 (630)
. ...+....++++ ||+++.. . |..++..+++.+.+. .++|++|...
T Consensus 124 H--~s~~d~~~~~~iPg~~v~~P---s-d~~e~~~~l~~a~~~~~~~P~~ir~~ 171 (178)
T PF02779_consen 124 H--HSIEDEAILRSIPGMKVVVP---S-DPAEAKGLLRAAIRRESDGPVYIREP 171 (178)
T ss_dssp T--SSSSHHHHHHTSTTEEEEE----S-SHHHHHHHHHHHHHSSSSSEEEEEEE
T ss_pred c--cccccccccccccccccccC---C-CHHHHHHHHHHHHHhCCCCeEEEEee
Confidence 3 233456677777 9999999 5 999999999988762 4799988653
No 222
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=89.55 E-value=5.5 Score=37.72 Aligned_cols=108 Identities=16% Similarity=0.156 Sum_probs=62.4
Q ss_pred hhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEE--cccccCchhHHHHHHHhHHcCCCcEEEEEECCCCcccccccc
Q 006816 107 QGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIM--SDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGPTSL 184 (630)
Q Consensus 107 ~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~--GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~~~~ 184 (630)
.+..+|.|.+.+. ++..+|+. |=|.+ ...-++..|...+.| +++|.-+-.....+....
T Consensus 50 ~A~~~A~g~ar~~---------------g~~~v~~~~~GpG~~---n~~~~l~~A~~~~~P-vl~i~g~~~~~~~~~~~~ 110 (172)
T PF02776_consen 50 GAAFMADGYARAT---------------GRPGVVIVTSGPGAT---NALTGLANAYADRIP-VLVITGQRPSAGEGRGAF 110 (172)
T ss_dssp HHHHHHHHHHHHH---------------SSEEEEEEETTHHHH---TTHHHHHHHHHTT-E-EEEEEEESSGGGTTTTST
T ss_pred hhHHHHHHHHHhh---------------ccceEEEeecccchH---HHHHHHhhcccceee-EEEEecccchhhhccccc
Confidence 4455666666655 34444444 33444 355678888899999 555544433222221111
Q ss_pred cChhcHHHHHHhCCCeEEEEeCCCCC-HHHHHHHHHHHHhcCCCcEEEEEe
Q 006816 185 VLSEDISARFKSLGWNTIMVENIHDN-LSSFKEALMAAANETKKPTFIRVK 234 (630)
Q Consensus 185 ~~~~~~~~~~~a~G~~~~~v~dG~~d-~~~l~~al~~a~~~~~~P~~i~~~ 234 (630)
+...|....++.+.-...++.+-. + ...+.+|++.+....++|+.|++.
T Consensus 111 q~~~d~~~~~~~~~k~~~~v~~~~-~~~~~~~~A~~~a~~~~~gPv~l~ip 160 (172)
T PF02776_consen 111 QQEIDQQSLFRPVTKWSYRVTSPD-DLPEALDRAFRAATSGRPGPVYLEIP 160 (172)
T ss_dssp TSSTHHHHHHGGGSSEEEEECSGG-GHHHHHHHHHHHHHHCSTSEEEEEEE
T ss_pred ccchhhcchhccccchhcccCCHH-HHHHHHHHHHHHhccCCCccEEEEcC
Confidence 113477788998875566773333 4 445677777773336899999985
No 223
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=89.51 E-value=2.3 Score=48.77 Aligned_cols=116 Identities=14% Similarity=0.141 Sum_probs=75.9
Q ss_pred CCccccccchHHHHHHHHHHHhcCCCCceEee-ehHHHHHhhHHHHHHhcccCCCeEEEEecCCCC-CCCCCCCCCChhh
Q 006816 365 GRNIRYGVREHAMAGISNGVALHGGGLIPFAA-TFLIFSDYMKNSIRLSALSHAGVIYILTHDSIG-LGEDGPTHQPVEQ 442 (630)
Q Consensus 365 ~R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~-~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~-~g~~G~tHq~~~d 442 (630)
=|++.+ -.|++++.+|.|.|... |...++. ++.+=+.-+..-|.++-..+.||+++....... .+. .++|.+++
T Consensus 44 i~~i~~-rhE~~A~~~Adgyar~t-g~~gv~~~t~GPG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~--~~~q~~d~ 119 (588)
T PRK07525 44 IRFIDV-AHEQNAGHMADGYTRVT-GRMGMVIGQNGPGITNFVTAVATAYWAHTPVVLVTPQAGTKTIGQ--GGFQEAEQ 119 (588)
T ss_pred CCEEEe-cCHHHHHHHHHHHHHHh-CCCEEEEEcCCccHHHHHHHHHHHhhcCCCEEEEeCCCCcccCCC--CCCcccch
Confidence 355555 78999999999999864 2455543 344433445566666667799999986222211 232 24777788
Q ss_pred hHHhhcCCCcEEEecCChHHHHHHHHHHH----HcCCCcEEEEEcCCC
Q 006816 443 LAGLRAVPRLLAFRPADGNETAGSYRVAI----ANRDVPSVIALSRQK 486 (630)
Q Consensus 443 ~a~l~~iP~l~v~~P~d~~e~~~~l~~a~----~~~~~P~~ir~~r~~ 486 (630)
..+++.+=. -.+...++.++...++.|+ .. .+|++|-+|+.-
T Consensus 120 ~~l~~~~tk-~~~~i~~~~~~~~~i~rA~~~A~~~-~GPV~i~iP~Dv 165 (588)
T PRK07525 120 MPMFEDMTK-YQEEVRDPSRMAEVLNRVFDKAKRE-SGPAQINIPRDY 165 (588)
T ss_pred hhhhhhhee-EEEECCCHHHHHHHHHHHHHHHhcC-CCCEEEEcChhH
Confidence 888887654 2444566766666666555 44 699999999753
No 224
>PRK08266 hypothetical protein; Provisional
Probab=89.35 E-value=1.4 Score=49.93 Aligned_cols=118 Identities=19% Similarity=0.122 Sum_probs=76.4
Q ss_pred CCccccccchHHHHHHHHHHHhcCCCCceEee-ehHHHHHhhHHHHHHhcccCCCeEEEEecCCCC-CCCC-CCCCCChh
Q 006816 365 GRNIRYGVREHAMAGISNGVALHGGGLIPFAA-TFLIFSDYMKNSIRLSALSHAGVIYILTHDSIG-LGED-GPTHQPVE 441 (630)
Q Consensus 365 ~R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~-~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~-~g~~-G~tHq~~~ 441 (630)
=|++.+ ..|++++.+|-|+|... |...++. +..+=+..++.-|.++...+.||+++....... .+.+ +.+|+...
T Consensus 44 i~~v~~-~hE~~A~~~A~gyar~t-g~~~v~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d 121 (542)
T PRK08266 44 IRVIHT-RHEQAAGYMAFGYARST-GRPGVCSVVPGPGVLNAGAALLTAYGCNSPVLCLTGQIPSALIGKGRGHLHEMPD 121 (542)
T ss_pred CeEEee-ccHHHHHHHHHHHHHHh-CCCeEEEECCCCcHHHHHHHHHHHHhhCCCEEEEecCCChhhccCCCCcceeccc
Confidence 456665 88999999999999875 2333333 455544566677777778899999985222211 2332 23455557
Q ss_pred hhHHhhcCCCcEEEecCChHHHHHHHHHHH----HcCCCcEEEEEcCC
Q 006816 442 QLAGLRAVPRLLAFRPADGNETAGSYRVAI----ANRDVPSVIALSRQ 485 (630)
Q Consensus 442 d~a~l~~iP~l~v~~P~d~~e~~~~l~~a~----~~~~~P~~ir~~r~ 485 (630)
...+++.+--. .+...++.++..+++.|+ ..+.+|++|-+|..
T Consensus 122 ~~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~d 168 (542)
T PRK08266 122 QLATLRSFTKW-AERIEHPSEAPALVAEAFQQMLSGRPRPVALEMPWD 168 (542)
T ss_pred HhhHHhhhcce-EEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEeCHh
Confidence 78889877653 334445566555555554 33579999999875
No 225
>PRK11269 glyoxylate carboligase; Provisional
Probab=89.25 E-value=2.6 Score=48.45 Aligned_cols=115 Identities=16% Similarity=0.103 Sum_probs=78.9
Q ss_pred CCccccccchHHHHHHHHHHHhc--CCCCceEe-eehHHHHHhhHHHHHHhcccCCCeEEEEecCCCC-CCCCCCCCCCh
Q 006816 365 GRNIRYGVREHAMAGISNGVALH--GGGLIPFA-ATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIG-LGEDGPTHQPV 440 (630)
Q Consensus 365 ~R~~~~gIaE~~~vg~a~GlA~~--G~~~~pv~-~~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~-~g~~G~tHq~~ 440 (630)
=|++.+ .-|++++.+|-|+|.. | ...++ .+..+=+..+..-+.++...+.||+++....... .+. ..+|.+
T Consensus 43 i~~v~~-rhE~~A~~mAdGYar~t~g--~~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~--~~~q~~ 117 (591)
T PRK11269 43 IRHILA-RHVEGASHMAEGYTRATAG--NIGVCIGTSGPAGTDMITGLYSASADSIPILCITGQAPRARLHK--EDFQAV 117 (591)
T ss_pred CcEEee-CCHHHHHHHHHHHHHHcCC--CcEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEecCCCccccCC--Cccccc
Confidence 367776 7999999999999975 4 44433 4566666666777777778899999985222222 232 237777
Q ss_pred hhhHHhhcCCCcEEEecCChHHHHHHHHHHHHc----CCCcEEEEEcCC
Q 006816 441 EQLAGLRAVPRLLAFRPADGNETAGSYRVAIAN----RDVPSVIALSRQ 485 (630)
Q Consensus 441 ~d~a~l~~iP~l~v~~P~d~~e~~~~l~~a~~~----~~~P~~ir~~r~ 485 (630)
+..++++.+=-. .+...++.++..+++.|++. +.+|++|-+|+.
T Consensus 118 d~~~l~~~itk~-s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 165 (591)
T PRK11269 118 DIESIAKPVTKW-AVTVREPALVPRVFQQAFHLMRSGRPGPVLIDLPFD 165 (591)
T ss_pred ChhhHhhcceeE-EEEcCCHHHHHHHHHHHHHHHhhCCCCeEEEEeChh
Confidence 788888876543 33446677777777766543 458999999975
No 226
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=89.13 E-value=3.1 Score=47.79 Aligned_cols=117 Identities=15% Similarity=0.114 Sum_probs=76.9
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCceEee-ehHHHHHhhHHHHHHhcccCCCeEEEEecCCCC-CCCCCCCCCChhhh
Q 006816 366 RNIRYGVREHAMAGISNGVALHGGGLIPFAA-TFLIFSDYMKNSIRLSALSHAGVIYILTHDSIG-LGEDGPTHQPVEQL 443 (630)
Q Consensus 366 R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~-~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~-~g~~G~tHq~~~d~ 443 (630)
|++.+ --|++++.+|-|.|....|...++. ++.+=+..+..-|.++...+.||+++....... .+. ..+|.++..
T Consensus 43 ~~V~~-rhE~~A~~mAdgyaR~t~g~~gv~~~t~GpG~~N~~~gla~A~~~~~Pvl~I~G~~~~~~~~~--~~~q~~D~~ 119 (588)
T TIGR01504 43 RHILA-RHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTDMITGLYSASADSIPILCITGQAPRARLHK--EDFQAVDIA 119 (588)
T ss_pred cEEee-CCHHHHHHHHHHHHHhcCCCeEEEEECCCccHHHHHHHHHHHhhcCCCEEEEecCCCccccCC--CcccccCHH
Confidence 55553 6699999999999975201333433 344433455666777777899999986333222 232 337777777
Q ss_pred HHhhcCCCcEEEecCChHHHHHHHHHHHH----cCCCcEEEEEcCCC
Q 006816 444 AGLRAVPRLLAFRPADGNETAGSYRVAIA----NRDVPSVIALSRQK 486 (630)
Q Consensus 444 a~l~~iP~l~v~~P~d~~e~~~~l~~a~~----~~~~P~~ir~~r~~ 486 (630)
++++.+=-.. +...++.++..+++.|++ .+.+|++|-+|+.-
T Consensus 120 ~~~~~vtk~~-~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~Dv 165 (588)
T TIGR01504 120 AIAKPVSKMA-VTVREAALVPRVLQQAFHLMRSGRPGPVLIDLPFDV 165 (588)
T ss_pred HHhhhhceEE-EEcCCHHHHHHHHHHHHHHHccCCCCeEEEEeCcch
Confidence 8888776433 334577788888877765 34689999999863
No 227
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=88.85 E-value=13 Score=36.45 Aligned_cols=115 Identities=17% Similarity=0.079 Sum_probs=67.2
Q ss_pred CCCCCccccccchHHHHH----HHHHHHhcCCCCceEeee--hHHHHHhhHHHHHHhcccCCCeEEEEecCC-CCC----
Q 006816 362 SPWGRNIRYGVREHAMAG----ISNGVALHGGGLIPFAAT--FLIFSDYMKNSIRLSALSHAGVIYILTHDS-IGL---- 430 (630)
Q Consensus 362 ~~p~R~~~~gIaE~~~vg----~a~GlA~~G~~~~pv~~~--~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g-~~~---- 430 (630)
..|.+|+..+- ...+| .|.|.++.. +-+|++.+ -..|+.. ...+..++..++|++++....+ ++.
T Consensus 36 ~~~~~~~~~~~--~gsmG~~lpaAiGa~la~-p~~~vv~i~GDGsf~m~-~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~ 111 (205)
T cd02003 36 RTPGGYHLEYG--YSCMGYEIAAGLGAKLAK-PDREVYVLVGDGSYLML-HSEIVTAVQEGLKIIIVLFDNHGFGCINNL 111 (205)
T ss_pred CCCCcEEcCCC--cchhhhHHHHHHHHHHhC-CCCeEEEEEccchhhcc-HHHHHHHHHcCCCCEEEEEECCccHHHHHH
Confidence 45788886532 33334 566666554 24566654 5666642 2234445667899877664443 321
Q ss_pred ----CCC--CCC--------------CCChhhhHHhhcCCCcEEEecCChHHHHHHHHHHHHcCCCcEEEEE
Q 006816 431 ----GED--GPT--------------HQPVEQLAGLRAVPRLLAFRPADGNETAGSYRVAIANRDVPSVIAL 482 (630)
Q Consensus 431 ----g~~--G~t--------------Hq~~~d~a~l~~iP~l~v~~P~d~~e~~~~l~~a~~~~~~P~~ir~ 482 (630)
+.. +.. .+...-.++.+++ |+..+.-.++.|++.+++.+++. ++|++|-+
T Consensus 112 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~-G~~~~~v~~~~el~~al~~a~~~-~gp~lIeV 181 (205)
T cd02003 112 QESTGSGSFGTEFRDRDQESGQLDGALLPVDFAANARSL-GARVEKVKTIEELKAALAKAKAS-DRTTVIVI 181 (205)
T ss_pred HHHhcCccccchhcccccccccccCCCCCCCHHHHHHhC-CCEEEEECCHHHHHHHHHHHHhC-CCCEEEEE
Confidence 100 000 1122222334444 67777779999999999999986 89998854
No 228
>PF09363 XFP_C: XFP C-terminal domain; InterPro: IPR018969 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=88.84 E-value=5.7 Score=38.56 Aligned_cols=129 Identities=17% Similarity=0.099 Sum_probs=65.4
Q ss_pred ccccccEEEecCC--CCCCCcEEEEEeCchH-HHHHHHHHHHHhc--CCceEEEEcccccccCccc-------HHHHhcc
Q 006816 498 EVERGGYIVSDNS--SENKPEIILIGTGTEL-SLCEGTAKTLRQE--GRRVRVVSLVCWRLFDRQP-------AEYKEKV 565 (630)
Q Consensus 498 ~~~~G~~~~~~~~--~~G~~dvtiva~G~~v-~~a~~aa~~L~~~--gi~~~Vi~~~~i~pld~~~-------~~~~~~v 565 (630)
.+..|..++..+| .++++||+|.+.|... .+++.|+++|++. +++++|||+.-|--|-... .....++
T Consensus 16 hc~~G~~iW~wAS~d~g~ePDVVlA~aGd~pT~E~lAA~~lLr~~~P~lkiRvVNVvDLm~L~~~~~hPhglsd~~Fd~l 95 (203)
T PF09363_consen 16 HCAAGAGIWDWASTDQGEEPDVVLACAGDVPTLEVLAAASLLREHFPELKIRVVNVVDLMKLQPPSEHPHGLSDEEFDAL 95 (203)
T ss_dssp HHHHSEEE-CCC-SSSTTT-SEEEEEESHHHHHHHHHHHHHHHHT--T--EEEEEESBGGGGS-TTT-TTS--HHHHHHH
T ss_pred HHHcCCeEEEeccCCCCCCCCEEEEecCchhhHHHHHHHHHHHHhccCceEEEEEEeEccccCCCCCCCCcCCHHHHHHh
Confidence 3445555553332 1235899999999986 8999999999988 9999999988775543221 1112345
Q ss_pred CCCCCeeEEEEecCCcccccccc----c-CcceEEEeccCCCCCCHHHHHHHcCCChHHHHHHHHHh
Q 006816 566 LPSRVVKRVSVEAGSSVGWREYV----G-VEGKVIGVEEFGASGAYLDTFKKYGFTIDNVTKVARSL 627 (630)
Q Consensus 566 ~~~~~~~~v~vEe~~~~g~~~~~----~-~~~~~~g~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~ 627 (630)
+.+.+++++...-... -...++ . .++...|..+=|..-++=++.-..++|-=+++..+.+.
T Consensus 96 FT~DkPViFafHGYp~-~i~~L~~~R~n~~~~hV~GY~EeGttTTPFDM~vlN~~dRfhLa~dai~~ 161 (203)
T PF09363_consen 96 FTKDKPVIFAFHGYPW-LIHRLLFGRPNHDRFHVHGYREEGTTTTPFDMRVLNGMDRFHLAKDAIRR 161 (203)
T ss_dssp H-SSS-EEEEESSEHH-HHHHHTTTSTTGGGEEEEEE-S---SS-HHHHHHCTT-SHHHHHHHHHHH
T ss_pred cCCCCCEEEEcCCCHH-HHHHHhcCCCCCCCeEEEeeccCCCcCchHHHHHHhCCCHHHHHHHHHHH
Confidence 5555576333221110 000111 1 23333444333333345677777788766666555443
No 229
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=88.83 E-value=6.5 Score=36.34 Aligned_cols=104 Identities=18% Similarity=0.042 Sum_probs=56.4
Q ss_pred hhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCC-Cccccccccc
Q 006816 107 QGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNH-NTIDGPTSLV 185 (630)
Q Consensus 107 ~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~-~~i~~~~~~~ 185 (630)
.+..+|.|.+++. ...-++++...-++. ....++..|...++| +++|.-+.. ....... .
T Consensus 45 ~A~~~A~g~~~~~--------------~~~~v~~~~~gpG~~--n~~~~l~~A~~~~~P-ll~i~~~~~~~~~~~~~--~ 105 (155)
T cd07035 45 GAVGMADGYARAT--------------GKPGVVLVTSGPGLT--NAVTGLANAYLDSIP-LLVITGQRPTAGEGRGA--F 105 (155)
T ss_pred HHHHHHHHHHHHH--------------CCCEEEEEcCCCcHH--HHHHHHHHHHhhCCC-EEEEeCCCccccccCCc--c
Confidence 4555666666654 222344444244444 567899999999999 555443332 2221111 1
Q ss_pred ChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHH----HHHhcCCCcEEEEE
Q 006816 186 LSEDISARFKSLGWNTIMVENIHDNLSSFKEALM----AAANETKKPTFIRV 233 (630)
Q Consensus 186 ~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~----~a~~~~~~P~~i~~ 233 (630)
...|....++.+--...++ + +.+++.+.+. .+....++|+.|.+
T Consensus 106 q~~d~~~~~~~~~~~~~~i---~-~~~~~~~~i~~A~~~a~~~~~gPv~l~i 153 (155)
T cd07035 106 QEIDQVALFRPITKWAYRV---T-SPEEIPEALRRAFRIALSGRPGPVALDL 153 (155)
T ss_pred cccCHHHHHHHHhceEEEc---C-CHHHHHHHHHHHHHHhcCCCCCcEEEEe
Confidence 1235555666553336666 3 5655555544 44431268999876
No 230
>PRK07586 hypothetical protein; Validated
Probab=88.81 E-value=3.1 Score=46.90 Aligned_cols=117 Identities=12% Similarity=0.026 Sum_probs=73.5
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCceEee-ehHHHHHhhHHHHHHhcccCCCeEEEEecCCCCCCCCCCCCCChhhhH
Q 006816 366 RNIRYGVREHAMAGISNGVALHGGGLIPFAA-TFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQLA 444 (630)
Q Consensus 366 R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~-~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~~g~~G~tHq~~~d~a 444 (630)
|++.+ --|++++.+|.|+|..- |..-++. ++.+=+..+..-|.++...+.||+++....... ...-..||......
T Consensus 41 ~~i~~-rhE~~A~~mAdgyar~t-g~~gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~i~G~~~~~-~~~~~~~q~~d~~~ 117 (514)
T PRK07586 41 RCVLG-LFEGVATGAADGYARMA-GKPAATLLHLGPGLANGLANLHNARRARTPIVNIVGDHATY-HRKYDAPLTSDIEA 117 (514)
T ss_pred eEEEe-ccHHHHHHHHHHHHHHH-CCCEEEEecccHHHHHHHHHHHHHHhcCCCEEEEecCCchh-ccCCCcccccchhh
Confidence 66665 78999999999999865 2333333 454434455666666677899999985221111 11112366666667
Q ss_pred HhhcCCCcEEEecCChHHHHHHHHHHH----HcCCCcEEEEEcCCC
Q 006816 445 GLRAVPRLLAFRPADGNETAGSYRVAI----ANRDVPSVIALSRQK 486 (630)
Q Consensus 445 ~l~~iP~l~v~~P~d~~e~~~~l~~a~----~~~~~P~~ir~~r~~ 486 (630)
+++.+=- -.+...++.++..+++.|+ ..+.+|++|-+|+.-
T Consensus 118 ~~~~vtk-~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~Dv 162 (514)
T PRK07586 118 LARPVSG-WVRRSESAADVAADAAAAVAAARGAPGQVATLILPADV 162 (514)
T ss_pred hhccccc-eeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEeccch
Confidence 7776632 2344566666666665555 334799999999763
No 231
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=88.48 E-value=3.1 Score=47.98 Aligned_cols=116 Identities=15% Similarity=0.156 Sum_probs=78.2
Q ss_pred CCccccccchHHHHHHHHHHHhcCCCCceEee-ehHHHHHhhHHHHHHhcccCCCeEEEEecCCCC-CCCCCCCCCChhh
Q 006816 365 GRNIRYGVREHAMAGISNGVALHGGGLIPFAA-TFLIFSDYMKNSIRLSALSHAGVIYILTHDSIG-LGEDGPTHQPVEQ 442 (630)
Q Consensus 365 ~R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~-~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~-~g~~G~tHq~~~d 442 (630)
=+++.+ -.|++++.+|.|+|..- |...++. +..+=+..++.-|.++...+.||+++....... .+. ..+|.++.
T Consensus 70 i~~v~~-rhE~~A~~~Adgyar~t-g~~gv~~~t~GPG~~N~l~gl~~A~~~~~PllvI~G~~~~~~~~~--~~~q~~d~ 145 (612)
T PRK07789 70 VRHVLV-RHEQGAGHAAEGYAQAT-GRVGVCMATSGPGATNLVTPIADANMDSVPVVAITGQVGRGLIGT--DAFQEADI 145 (612)
T ss_pred ceEEEe-ccHHHHHHHHHHHHHHh-CCCEEEEECCCccHHHHHHHHHHHhhcCCCEEEEecCCCccccCC--CcCcccch
Confidence 356665 88999999999999864 2444443 444444456667777778899999986322222 232 24677777
Q ss_pred hHHhhcCCCcEEEecCChHHHHHHHHHHHHc----CCCcEEEEEcCC
Q 006816 443 LAGLRAVPRLLAFRPADGNETAGSYRVAIAN----RDVPSVIALSRQ 485 (630)
Q Consensus 443 ~a~l~~iP~l~v~~P~d~~e~~~~l~~a~~~----~~~P~~ir~~r~ 485 (630)
.++++.+--. .+...++.++..+++.|++. +.+|++|-+|+.
T Consensus 146 ~~l~~~~tk~-s~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~D 191 (612)
T PRK07789 146 VGITMPITKH-NFLVTDADDIPRVIAEAFHIASTGRPGPVLVDIPKD 191 (612)
T ss_pred hhhhhcceeE-EEEcCCHHHHHHHHHHHHHHHhcCCCceEEEEEccc
Confidence 7888877653 23456777877777776653 468999999975
No 232
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=88.37 E-value=2.9 Score=48.06 Aligned_cols=117 Identities=15% Similarity=0.102 Sum_probs=77.1
Q ss_pred CCccccccchHHHHHHHHHHHhcCCCCceEee-ehHHHHHhhHHHHHHhcccCCCeEEEEecCCCC-CCCCCCCCCChhh
Q 006816 365 GRNIRYGVREHAMAGISNGVALHGGGLIPFAA-TFLIFSDYMKNSIRLSALSHAGVIYILTHDSIG-LGEDGPTHQPVEQ 442 (630)
Q Consensus 365 ~R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~-~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~-~g~~G~tHq~~~d 442 (630)
=|++.+ --|++++.+|-|+|..- |...++. ++.+=+..+..-|.++-..+.||+++....... .+. .++|.++.
T Consensus 50 i~~I~~-rhE~~A~~mAdgyar~t-g~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~ 125 (595)
T PRK09107 50 IQHILV-RHEQGAGHAAEGYARST-GKPGVVLVTSGPGATNAVTPLQDALMDSIPLVCITGQVPTHLIGS--DAFQECDT 125 (595)
T ss_pred CeEEEE-CChHHHHHHHHHHHHHh-CCCEEEEECCCccHhHHHHHHHHHhhcCCCEEEEEcCCChhhcCC--CCCcccch
Confidence 467776 88999999999999653 2445544 355444456666666677799999985222211 232 34777777
Q ss_pred hHHhhcCCCcEEEecCChHHHHHHHHHHHHc----CCCcEEEEEcCCC
Q 006816 443 LAGLRAVPRLLAFRPADGNETAGSYRVAIAN----RDVPSVIALSRQK 486 (630)
Q Consensus 443 ~a~l~~iP~l~v~~P~d~~e~~~~l~~a~~~----~~~P~~ir~~r~~ 486 (630)
.++++.+=-. .+...++.++..+++.|++. ..+|++|-+|+.-
T Consensus 126 ~~l~~~vtk~-~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv 172 (595)
T PRK09107 126 VGITRPCTKH-NWLVKDVNDLARVIHEAFHVATSGRPGPVVVDIPKDV 172 (595)
T ss_pred hhhhhhheEE-EEEeCCHHHHHHHHHHHHHHhcCCCCceEEEecCCCh
Confidence 7777765432 23356677777777766653 4699999999753
No 233
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=88.36 E-value=3 Score=47.80 Aligned_cols=113 Identities=15% Similarity=0.001 Sum_probs=72.0
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCceEeee--hHHHHHhhHHHHHHhcccCCCeEEEEecCCCC-CCCCCCCCCChhh
Q 006816 366 RNIRYGVREHAMAGISNGVALHGGGLIPFAAT--FLIFSDYMKNSIRLSALSHAGVIYILTHDSIG-LGEDGPTHQPVEQ 442 (630)
Q Consensus 366 R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~~--~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~-~g~~G~tHq~~~d 442 (630)
|++.+ --|++++-+|-|+|... -+|-+++ ...=...+..-|.++...+.||+++....... .+. ..||.+.+
T Consensus 43 ~~i~~-rhE~~A~~~Adgyar~t--g~~gv~~~t~GpG~~n~~~gi~~A~~~~~Pvl~i~G~~~~~~~~~--~~~Q~~d~ 117 (574)
T PRK09124 43 EWMHT-RHEEVAAFAAGAEAQLT--GELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIGS--GYFQETHP 117 (574)
T ss_pred cEEEe-CcHHHHHHHHHHHHHhh--CCcEEEEECCCCCHHHHHHHHHHHhhcCCCEEEEecCCccccCCC--CCccccCh
Confidence 45444 58999999999999976 4454432 33323455666777777899999985221221 232 24788888
Q ss_pred hHHhhcCCCcEEEecCChHHHHH----HHHHHHHcCCCcEEEEEcCC
Q 006816 443 LAGLRAVPRLLAFRPADGNETAG----SYRVAIANRDVPSVIALSRQ 485 (630)
Q Consensus 443 ~a~l~~iP~l~v~~P~d~~e~~~----~l~~a~~~~~~P~~ir~~r~ 485 (630)
..+++.+--.. +...++.++.. +++.|+.. .+|++|-+|+.
T Consensus 118 ~~l~~~itk~~-~~v~~~~~~~~~i~~A~~~A~~~-~gPV~l~iP~D 162 (574)
T PRK09124 118 QELFRECSHYC-ELVSNPEQLPRVLAIAMRKAILN-RGVAVVVLPGD 162 (574)
T ss_pred hhhcccceeee-EEeCCHHHHHHHHHHHHHHHhcC-CCCEEEEeChh
Confidence 88888664332 22445555444 55555553 69999999865
No 234
>PRK08617 acetolactate synthase; Reviewed
Probab=88.36 E-value=2.5 Score=48.08 Aligned_cols=116 Identities=14% Similarity=0.058 Sum_probs=77.6
Q ss_pred CCccccccchHHHHHHHHHHHhcCCCCceEee-ehHHHHHhhHHHHHHhcccCCCeEEEEecCCCC-CCCCCCCCCChhh
Q 006816 365 GRNIRYGVREHAMAGISNGVALHGGGLIPFAA-TFLIFSDYMKNSIRLSALSHAGVIYILTHDSIG-LGEDGPTHQPVEQ 442 (630)
Q Consensus 365 ~R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~-~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~-~g~~G~tHq~~~d 442 (630)
=|++.+ ..|++++.+|.|.|... |...++. +..+=+.-++.-|.++...+.||+++....... .+. ..||.+..
T Consensus 43 i~~i~~-~hE~~A~~~A~gyar~t-g~~gv~~vt~GpG~~N~l~gl~~A~~~~~PvlvisG~~~~~~~~~--~~~q~~d~ 118 (552)
T PRK08617 43 PELIVT-RHEQNAAFMAAAIGRLT-GKPGVVLVTSGPGVSNLATGLVTATAEGDPVVAIGGQVKRADRLK--RTHQSMDN 118 (552)
T ss_pred CCEEEe-ccHHHHHHHHHhHhhhc-CCCEEEEECCCCcHhHhHHHHHHHhhcCCCEEEEecCCcccccCC--CCccccch
Confidence 456655 78999999999999875 2333433 455444456666766777899999985222221 232 24888888
Q ss_pred hHHhhcCCCcEEEecCChHHHHHHHHHHHHc----CCCcEEEEEcCC
Q 006816 443 LAGLRAVPRLLAFRPADGNETAGSYRVAIAN----RDVPSVIALSRQ 485 (630)
Q Consensus 443 ~a~l~~iP~l~v~~P~d~~e~~~~l~~a~~~----~~~P~~ir~~r~ 485 (630)
..+++.+-- ..+.-.++.++..+++.|++. +.+|++|-+|+.
T Consensus 119 ~~l~~~~tk-~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d 164 (552)
T PRK08617 119 VALFRPITK-YSAEVQDPDNLSEVLANAFRAAESGRPGAAFVSLPQD 164 (552)
T ss_pred hhhhhhhcc-eEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEeChhh
Confidence 888988864 344445667777777666653 468999999865
No 235
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=88.32 E-value=3.7 Score=47.08 Aligned_cols=115 Identities=15% Similarity=0.125 Sum_probs=75.1
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCceEee-ehHHHHHhhHHHHHHhcccCCCeEEEEecCCCC-CCCCCCCCCChhhh
Q 006816 366 RNIRYGVREHAMAGISNGVALHGGGLIPFAA-TFLIFSDYMKNSIRLSALSHAGVIYILTHDSIG-LGEDGPTHQPVEQL 443 (630)
Q Consensus 366 R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~-~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~-~g~~G~tHq~~~d~ 443 (630)
|++.+ --|++++.+|.|+|... |...++. +..+=+..+..-|.++...+.||+++....+.. .+. ..||.+...
T Consensus 41 ~~i~~-rhE~~A~~~Adgyar~t-g~~gv~~~t~GPG~~N~~~gla~A~~~~~Pvl~I~g~~~~~~~~~--~~~Q~~d~~ 116 (579)
T TIGR03457 41 RFIPV-VHEQGAGHMADGFARVT-GRMSMVIGQNGPGVTNCVTAIAAAYWAHTPVVIVTPEAGTKTIGL--GGFQEADQL 116 (579)
T ss_pred eEEEe-ccHHHHHHHHHHHHHHh-CCCEEEEECCCchHHHHHHHHHHHhhcCCCEEEEeCCCccccCCC--CCCcccchh
Confidence 56655 78999999999999764 2444443 454444456666777777899999985222221 232 347877777
Q ss_pred HHhhcCCCcEEEecCChHHHHHHHHHH----HHcCCCcEEEEEcCCC
Q 006816 444 AGLRAVPRLLAFRPADGNETAGSYRVA----IANRDVPSVIALSRQK 486 (630)
Q Consensus 444 a~l~~iP~l~v~~P~d~~e~~~~l~~a----~~~~~~P~~ir~~r~~ 486 (630)
.+++.+=-. .+...++.++..+++.| ... .+|++|-+|+.-
T Consensus 117 ~l~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~~~-~GPV~l~iP~Dv 161 (579)
T TIGR03457 117 PMFQEFTKY-QGHVRHPSRMAEVLNRCFERAWRE-MGPAQLNIPRDY 161 (579)
T ss_pred hhhhcceeE-EEecCCHHHHHHHHHHHHHHHhcC-CCCEEEEeCcch
Confidence 888876542 33345666666666555 444 589999999764
No 236
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=88.07 E-value=3.7 Score=46.90 Aligned_cols=115 Identities=15% Similarity=0.107 Sum_probs=79.3
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCceEee-ehHHHHHhhHHHHHHhcccCCCeEEEEecCCCC-CCCCCCCCCChhhh
Q 006816 366 RNIRYGVREHAMAGISNGVALHGGGLIPFAA-TFLIFSDYMKNSIRLSALSHAGVIYILTHDSIG-LGEDGPTHQPVEQL 443 (630)
Q Consensus 366 R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~-~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~-~g~~G~tHq~~~d~ 443 (630)
|++.+ -.|++++.+|.|+|... |...++. ++.+=+..+..-|.++...+.||+++....... .+. ..+|.+++.
T Consensus 43 ~~v~~-rhE~~A~~~Adgyar~t-g~~gv~~~t~GpG~~n~~~gla~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~~ 118 (563)
T PRK08527 43 KHILT-RHEQAAVHAADGYARAS-GKVGVAIVTSGPGFTNAVTGLATAYMDSIPLVLISGQVPNSLIGT--DAFQEIDAV 118 (563)
T ss_pred eEEEe-ccHHHHHHHHHHHHhhh-CCCEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEecCCCccccCC--CCCcccchh
Confidence 56655 78999999999999765 2444443 455444456667777777899999985222211 232 247778877
Q ss_pred HHhhcCCCcEEEecCChHHHHHHHHHHHHc----CCCcEEEEEcCC
Q 006816 444 AGLRAVPRLLAFRPADGNETAGSYRVAIAN----RDVPSVIALSRQ 485 (630)
Q Consensus 444 a~l~~iP~l~v~~P~d~~e~~~~l~~a~~~----~~~P~~ir~~r~ 485 (630)
++++.+=- -.+...++.++..+++.|++. ..+|+||-+|..
T Consensus 119 ~~~~~~tk-~s~~v~~~~~i~~~l~~A~~~a~s~~~GPV~l~iP~D 163 (563)
T PRK08527 119 GISRPCVK-HNYLVKSIEELPRILKEAFYIARSGRPGPVHIDIPKD 163 (563)
T ss_pred hhhhcccc-eEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 88887754 334567888888888887753 458999999864
No 237
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=87.94 E-value=3.3 Score=47.31 Aligned_cols=116 Identities=15% Similarity=0.074 Sum_probs=77.0
Q ss_pred CCccccccchHHHHHHHHHHHhcCCCCceEee-ehHHHHHhhHHHHHHhcccCCCeEEEEecCCCC-CCCCCCCCCChhh
Q 006816 365 GRNIRYGVREHAMAGISNGVALHGGGLIPFAA-TFLIFSDYMKNSIRLSALSHAGVIYILTHDSIG-LGEDGPTHQPVEQ 442 (630)
Q Consensus 365 ~R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~-~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~-~g~~G~tHq~~~d 442 (630)
=|++.+ --|++++.+|.|+|... |...++. ++.+=+..+..-|.++-..+.||+++....... .+. ..+|.++.
T Consensus 49 i~~i~~-rhE~~A~~~Adgyar~t-g~~gv~~~t~GPG~~n~~~gla~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~ 124 (566)
T PRK07282 49 IRHILA-RHEQGALHEAEGYAKST-GKLGVAVVTSGPGATNAITGIADAMSDSVPLLVFTGQVARAGIGK--DAFQEADI 124 (566)
T ss_pred ceEEEe-cCHHHHHHHHHHHHHHh-CCCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEecccccccCCC--CCccccCh
Confidence 367766 78999999999999864 2444443 444434456666666667799999986332222 332 24666777
Q ss_pred hHHhhcCCCcEEEecCChHHHHHHHHHHHHc----CCCcEEEEEcCC
Q 006816 443 LAGLRAVPRLLAFRPADGNETAGSYRVAIAN----RDVPSVIALSRQ 485 (630)
Q Consensus 443 ~a~l~~iP~l~v~~P~d~~e~~~~l~~a~~~----~~~P~~ir~~r~ 485 (630)
.++++.+=.... ...++.++..+++.|++. +.+|+||-+|+.
T Consensus 125 ~~~~~~itk~s~-~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 170 (566)
T PRK07282 125 VGITMPITKYNY-QIRETADIPRIITEAVHIATTGRPGPVVIDLPKD 170 (566)
T ss_pred hchhcCCCceeE-EcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCChh
Confidence 778877665443 344667777776666654 469999999875
No 238
>PRK08611 pyruvate oxidase; Provisional
Probab=87.89 E-value=3.5 Score=47.22 Aligned_cols=115 Identities=14% Similarity=0.022 Sum_probs=75.4
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCceEee-ehHHHHHhhHHHHHHhcccCCCeEEEEecCCCC-CCCCCCCCCChhhh
Q 006816 366 RNIRYGVREHAMAGISNGVALHGGGLIPFAA-TFLIFSDYMKNSIRLSALSHAGVIYILTHDSIG-LGEDGPTHQPVEQL 443 (630)
Q Consensus 366 R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~-~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~-~g~~G~tHq~~~d~ 443 (630)
|++. ...|++++.+|.|+|..- |...++. ++.+=+..+..-|.++...+.||+++....... .+. ..+|.+...
T Consensus 45 ~~i~-~rhE~~A~~mAdgyar~t-g~~gv~~~t~GPG~~N~l~gla~A~~~~~Pvl~ItG~~~~~~~~~--~~~q~~d~~ 120 (576)
T PRK08611 45 KFIQ-VRHEEVAALAAAAYAKLT-GKIGVCLSIGGPGAIHLLNGLYDAKMDHVPVLALAGQVTSDLLGT--DFFQEVNLE 120 (576)
T ss_pred eEEE-eCcHHHHHHHHHHHHHHh-CCceEEEECCCCcHHHHHHHHHHHhhcCCCEEEEecCCcccccCC--CCccccCHH
Confidence 5665 478999999999999765 2333333 355544556667777777899999985222222 232 236767778
Q ss_pred HHhhcCCCcEEEecCChHHHHHHHHHH----HHcCCCcEEEEEcCCC
Q 006816 444 AGLRAVPRLLAFRPADGNETAGSYRVA----IANRDVPSVIALSRQK 486 (630)
Q Consensus 444 a~l~~iP~l~v~~P~d~~e~~~~l~~a----~~~~~~P~~ir~~r~~ 486 (630)
.+++.+--. .+...++.++..+++.| ... .+|++|-+|..-
T Consensus 121 ~l~~~itk~-~~~v~~~~~~~~~l~~A~~~A~~~-~GPV~l~iP~Dv 165 (576)
T PRK08611 121 KMFEDVAVY-NHQIMSAENLPEIVNQAIRTAYEK-KGVAVLTIPDDL 165 (576)
T ss_pred HHhhcccce-eEEeCCHHHHHHHHHHHHHHHhhC-CCCEEEEeChhh
Confidence 889887543 33455666666666554 443 699999998753
No 239
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=87.85 E-value=2.9 Score=47.84 Aligned_cols=118 Identities=11% Similarity=0.013 Sum_probs=78.8
Q ss_pred CCccccccchHHHHHHHHHHHhcCCCCceEee-ehHHHHHhhHHHHHHhcccCCCeEEEEecCCCC-CCCCCCCCCChhh
Q 006816 365 GRNIRYGVREHAMAGISNGVALHGGGLIPFAA-TFLIFSDYMKNSIRLSALSHAGVIYILTHDSIG-LGEDGPTHQPVEQ 442 (630)
Q Consensus 365 ~R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~-~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~-~g~~G~tHq~~~d 442 (630)
=|++.+ --|++++.+|.|.|..- |...++. +..+=+..+..-|.++...+.||+++....... .+..-.++|.+..
T Consensus 48 i~~i~~-rhE~~A~~mAdgyar~t-g~~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~ 125 (569)
T PRK09259 48 IRYIGF-RHEQSAGNAAAAAGFLT-QKPGVCLTVSAPGFLNGLTALANATTNCFPMIMISGSSEREIVDLQQGDYEELDQ 125 (569)
T ss_pred CCEEee-CCHHHHHHHHHHHHHHh-CCCEEEEEcCCccHHHHHHHHHHHHhcCCCEEEEEccCCcccccccCCCccccch
Confidence 356665 78999999999999874 2444443 466666677778888888899999985222111 1211224677777
Q ss_pred hHHhhcCCCcEEEecCChHHHHHHHHHHH----HcCCCcEEEEEcCC
Q 006816 443 LAGLRAVPRLLAFRPADGNETAGSYRVAI----ANRDVPSVIALSRQ 485 (630)
Q Consensus 443 ~a~l~~iP~l~v~~P~d~~e~~~~l~~a~----~~~~~P~~ir~~r~ 485 (630)
.++++.+=... +...++.++...++.|+ ..+++|++|-+|+.
T Consensus 126 ~~~~~~~tk~s-~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 171 (569)
T PRK09259 126 LNAAKPFCKAA-FRVNRAEDIGIGVARAIRTAVSGRPGGVYLDLPAK 171 (569)
T ss_pred hhhhhhheeee-EEcCCHHHHHHHHHHHHHHhhhCCCCcEEEEeCHH
Confidence 78888776533 34456777776665554 43579999999865
No 240
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=87.82 E-value=3.3 Score=47.42 Aligned_cols=116 Identities=15% Similarity=0.117 Sum_probs=75.9
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCceEee-ehHHHHHhhHHHHHHhcccCCCeEEEEecCCCCCCCCCCCCCChhhhH
Q 006816 366 RNIRYGVREHAMAGISNGVALHGGGLIPFAA-TFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQLA 444 (630)
Q Consensus 366 R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~-~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~~g~~G~tHq~~~d~a 444 (630)
|++.+ --|++++.+|-|+|... |...++. +..+=+..++.-|.++-..+.||+++....... ...-.++|.++..+
T Consensus 44 ~~v~~-~hE~~A~~mAdgyar~t-g~~gv~~~t~GpG~~N~l~~i~~A~~~~~Pvlvi~G~~~~~-~~~~~~~q~~d~~~ 120 (574)
T PRK06882 44 EHVLV-RHEQAAVHMADGYARST-GKVGCVLVTSGPGATNAITGIATAYTDSVPLVILSGQVPSN-LIGTDAFQECDMLG 120 (574)
T ss_pred eEEEe-ccHHHHHHHHHHHHHhh-CCCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEecCCCcc-ccCCCcccccchhh
Confidence 56665 88999999999999865 2333333 344434456666777777899999985222211 11122477777778
Q ss_pred HhhcCCCcEEEecCChHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 006816 445 GLRAVPRLLAFRPADGNETAGSYRVAIA----NRDVPSVIALSRQ 485 (630)
Q Consensus 445 ~l~~iP~l~v~~P~d~~e~~~~l~~a~~----~~~~P~~ir~~r~ 485 (630)
+++.+=- -.....++.++..+++.|++ .+.+|++|-+|..
T Consensus 121 l~~~vtk-~s~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 164 (574)
T PRK06882 121 ISRPVVK-HSFIVKNAEDIPSTIKKAFYIASTGRPGPVVIDIPKD 164 (574)
T ss_pred hhhcccc-eEEEeCCHHHHHHHHHHHHHHHhcCCCCCEEEecCHH
Confidence 8887654 23445566777766666665 2469999999875
No 241
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=87.80 E-value=2.9 Score=39.12 Aligned_cols=101 Identities=16% Similarity=0.047 Sum_probs=60.7
Q ss_pred HHHHHHHHhcCCCCceEeee--hHHHHHhhHHHHHHhcccCCCeEEEEecCCCC-C-CCC----------CCCCCChhhh
Q 006816 378 AGISNGVALHGGGLIPFAAT--FLIFSDYMKNSIRLSALSHAGVIYILTHDSIG-L-GED----------GPTHQPVEQL 443 (630)
Q Consensus 378 vg~a~GlA~~G~~~~pv~~~--~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~-~-g~~----------G~tHq~~~d~ 443 (630)
++.|.|.++..+ -++++.+ -..|.. .+..+..+...++|++++....+.. . +.. +...+...-.
T Consensus 52 ~~~a~Gaa~a~~-~~~vv~~~GDG~~~~-~~~~l~ta~~~~~~~~~iv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 129 (168)
T cd00568 52 LPAAIGAALAAP-DRPVVCIAGDGGFMM-TGQELATAVRYGLPVIVVVFNNGGYGTIRMHQEAFYGGRVSGTDLSNPDFA 129 (168)
T ss_pred HHHHHHHHHhCC-CCcEEEEEcCcHHhc-cHHHHHHHHHcCCCcEEEEEECCccHHHHHHHHHHcCCCcccccCCCCCHH
Confidence 446677666541 2444443 455654 4455666667799988887555542 1 100 0111122222
Q ss_pred HHhhcCCCcEEEecCChHHHHHHHHHHHHcCCCcEEEEE
Q 006816 444 AGLRAVPRLLAFRPADGNETAGSYRVAIANRDVPSVIAL 482 (630)
Q Consensus 444 a~l~~iP~l~v~~P~d~~e~~~~l~~a~~~~~~P~~ir~ 482 (630)
++.++. |+......+..|++.+++.+.+. ++|++|..
T Consensus 130 ~~a~~~-G~~~~~v~~~~~l~~a~~~a~~~-~~p~~i~v 166 (168)
T cd00568 130 ALAEAY-GAKGVRVEDPEDLEAALAEALAA-GGPALIEV 166 (168)
T ss_pred HHHHHC-CCeEEEECCHHHHHHHHHHHHhC-CCCEEEEE
Confidence 344443 77777778899999999999976 89998864
No 242
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=87.62 E-value=3.3 Score=47.57 Aligned_cols=116 Identities=17% Similarity=0.098 Sum_probs=77.2
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCceEee-ehHHHHHhhHHHHHHhcccCCCeEEEEecCCCCCCCCCCCCCChhhhH
Q 006816 366 RNIRYGVREHAMAGISNGVALHGGGLIPFAA-TFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQLA 444 (630)
Q Consensus 366 R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~-~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~~g~~G~tHq~~~d~a 444 (630)
|++.+ -.|++++.+|-|+|..- |...++. ++.+=+.-++.-|.++-..+.||+++....... ......+|.+++.+
T Consensus 40 ~~i~~-~hE~~A~~~Adgyar~t-g~~gv~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~G~~~~~-~~~~~~~q~~d~~~ 116 (586)
T PRK06276 40 IHILT-RHEQAAAHAADGYARAS-GKVGVCVATSGPGATNLVTGIATAYADSSPVIALTGQVPTK-LIGNDAFQEIDALG 116 (586)
T ss_pred cEEEe-ccHHHHHHHHHHHHHHh-CCCEEEEECCCccHHHHHHHHHHHHhcCCCEEEEeCCCCcc-ccCCCCCccccHhh
Confidence 55555 68999999999999864 2333333 455444556677777778899999985222221 11223477777888
Q ss_pred HhhcCCCcEEEecCChHHHHHHHHHHHHc----CCCcEEEEEcCC
Q 006816 445 GLRAVPRLLAFRPADGNETAGSYRVAIAN----RDVPSVIALSRQ 485 (630)
Q Consensus 445 ~l~~iP~l~v~~P~d~~e~~~~l~~a~~~----~~~P~~ir~~r~ 485 (630)
+++.+=-.... -.++.++...++.|++. ..+|+||-+|+.
T Consensus 117 l~~~~tk~s~~-v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~D 160 (586)
T PRK06276 117 IFMPITKHNFQ-IKKPEEIPEIFRAAFEIAKTGRPGPVHIDLPKD 160 (586)
T ss_pred HHhhhcceEEe-cCCHHHHHHHHHHHHHHhcCCCCCcEEEEcChh
Confidence 88877654443 35567777777776653 468999999875
No 243
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=87.56 E-value=2.3 Score=48.66 Aligned_cols=117 Identities=15% Similarity=0.011 Sum_probs=74.9
Q ss_pred CCccccccchHHHHHHHHHHHhcCCCCceEee-ehHHHHHhhHHHHHHhcccCCCeEEEEecCCCCCCCCCCCCCChhhh
Q 006816 365 GRNIRYGVREHAMAGISNGVALHGGGLIPFAA-TFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQL 443 (630)
Q Consensus 365 ~R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~-~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~~g~~G~tHq~~~d~ 443 (630)
=|++.+ --|++++.+|-|.|... |...++. ++.+=+..+..-|.++-..+.||+++..... ....+-.++|.+...
T Consensus 39 i~~v~~-rhE~~A~~~Adgyar~t-gk~gv~~~t~GPG~~n~~~~i~~A~~~~~Pvl~I~G~~~-~~~~~~~~~q~id~~ 115 (575)
T TIGR02720 39 IHYIQV-RHEEVGALAAAADAKLT-GKIGVCFGSAGPGATHLLNGLYDAKEDHVPVLALVGQVP-TTGMNMDTFQEMNEN 115 (575)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHhh-CCceEEEeCCCCcHHHHHHHHHHHhhcCCCEEEEecCCc-cccCCCCCcceechh
Confidence 355555 67999999999999865 2444443 4554445566667777778999999852222 222234557878777
Q ss_pred HHhhcCCCcEEEecCChHHH----HHHHHHHHHcCCCcEEEEEcCCC
Q 006816 444 AGLRAVPRLLAFRPADGNET----AGSYRVAIANRDVPSVIALSRQK 486 (630)
Q Consensus 444 a~l~~iP~l~v~~P~d~~e~----~~~l~~a~~~~~~P~~ir~~r~~ 486 (630)
++++.+=-. .....++.++ ..+++.|+. ..+|+||-+|+.-
T Consensus 116 ~~~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~~-~~GPV~l~iP~Dv 160 (575)
T TIGR02720 116 PIYADVAVY-NRTAMTAESLPHVIDEAIRRAYA-HNGVAVVTIPVDF 160 (575)
T ss_pred hhhhhcceE-EEEeCCHHHHHHHHHHHHHHHhh-CCCCEEEEECcch
Confidence 888866432 2233444444 445555666 4799999999763
No 244
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=87.49 E-value=1.5 Score=50.09 Aligned_cols=116 Identities=13% Similarity=0.019 Sum_probs=77.9
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCceEe-eehHHHHHhhHHHHHHhcccCCCeEEEEecCCCC-CCCCCCCCCChhhh
Q 006816 366 RNIRYGVREHAMAGISNGVALHGGGLIPFA-ATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIG-LGEDGPTHQPVEQL 443 (630)
Q Consensus 366 R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~-~~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~-~g~~G~tHq~~~d~ 443 (630)
|++.+ .-|++++.+|-|+|... |...++ .++.+=+..++..|..+...+.||+++....... .+ -..||.+...
T Consensus 49 ~~v~~-~hE~~A~~aAdgyar~t-g~~~v~~vt~GpG~~N~l~~i~~A~~~~~Pvl~IsG~~~~~~~~--~~~~q~~d~~ 124 (568)
T PRK07449 49 RLHTH-FDERSAGFLALGLAKAS-KRPVAVIVTSGTAVANLYPAVIEAGLTGVPLIVLTADRPPELRD--CGANQAIDQL 124 (568)
T ss_pred EEEee-cCcccHHHHHHHHHHhh-CCCEEEEECCccHHHhhhHHHHHHhhcCCcEEEEECCCCHHHhc--CCCCceecHh
Confidence 55554 78999999999999875 233333 4566655667777777778899999985222211 23 2337888889
Q ss_pred HHhhcCCCcEEEecCChHH-----HHHHHHH---HHHcCCCcEEEEEcCC
Q 006816 444 AGLRAVPRLLAFRPADGNE-----TAGSYRV---AIANRDVPSVIALSRQ 485 (630)
Q Consensus 444 a~l~~iP~l~v~~P~d~~e-----~~~~l~~---a~~~~~~P~~ir~~r~ 485 (630)
++++.+-...+-.|....+ +..+++. +...+.+|++|-+|..
T Consensus 125 ~~~~~~t~~~v~~~~~~~~~~~~~~~~~~~a~~~a~~~~~GPV~i~iP~D 174 (568)
T PRK07449 125 GLFGSYPFTSLALPEPTQDILAYWLVTTIDAALAAQTLQAGPVHINCPFR 174 (568)
T ss_pred hHhhhhhhhccCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCEEEeCCCC
Confidence 9999887666666666221 3345555 3334579999999975
No 245
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=87.49 E-value=3.4 Score=47.07 Aligned_cols=117 Identities=11% Similarity=0.024 Sum_probs=75.7
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCceEee-ehHHHHHhhHHHHHHhcccCCCeEEEEecCCCC-CCCCCCCCCChhhh
Q 006816 366 RNIRYGVREHAMAGISNGVALHGGGLIPFAA-TFLIFSDYMKNSIRLSALSHAGVIYILTHDSIG-LGEDGPTHQPVEQL 443 (630)
Q Consensus 366 R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~-~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~-~g~~G~tHq~~~d~ 443 (630)
|++.+ --|++++.+|.|.|..- |..-++. +..+=+..+..-|.++-..+.||+++....... .+..-..||.++..
T Consensus 42 ~~i~~-rhE~~A~~mAdgyar~t-g~~gv~~~t~GPG~~N~~~gia~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~ 119 (554)
T TIGR03254 42 RYIGF-RHEQSAGYAAAAAGFLT-QKPGVCLTVSAPGFLNGLTALANATTNCFPMIMISGSSERHIVDLQQGDYEEMDQL 119 (554)
T ss_pred cEEEe-CCHHHHHHHHHHHHHHh-CCCEEEEEccCccHHhHHHHHHHHHhcCCCEEEEEccCCccccccCCCCcchhhHH
Confidence 56665 78999999999999864 2444443 344434456666777777899999885222211 11122347777888
Q ss_pred HHhhcCCCcEEEecCChHHHHHHHHHH----HHcCCCcEEEEEcCC
Q 006816 444 AGLRAVPRLLAFRPADGNETAGSYRVA----IANRDVPSVIALSRQ 485 (630)
Q Consensus 444 a~l~~iP~l~v~~P~d~~e~~~~l~~a----~~~~~~P~~ir~~r~ 485 (630)
++++.+=.. .+...++.++..+++.| +..+++|+||-+|+.
T Consensus 120 ~~~~~vtk~-~~~v~~~~~~~~~i~rA~~~A~~~~pGPV~l~iP~D 164 (554)
T TIGR03254 120 AAAKPFAKA-AYRVLRAEDIGIGIARAIRTAVSGRPGGVYLDLPAA 164 (554)
T ss_pred HHhhhhhee-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHH
Confidence 888877553 44455666666655555 444578999999865
No 246
>PLN02470 acetolactate synthase
Probab=87.36 E-value=3.8 Score=47.06 Aligned_cols=116 Identities=15% Similarity=0.112 Sum_probs=78.1
Q ss_pred CCccccccchHHHHHHHHHHHhcCCCCceEee-ehHHHHHhhHHHHHHhcccCCCeEEEEecCCCC-CCCCCCCCCChhh
Q 006816 365 GRNIRYGVREHAMAGISNGVALHGGGLIPFAA-TFLIFSDYMKNSIRLSALSHAGVIYILTHDSIG-LGEDGPTHQPVEQ 442 (630)
Q Consensus 365 ~R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~-~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~-~g~~G~tHq~~~d 442 (630)
=|++.+ --|++++.+|.|+|..- |...++. ++.+=+.-++.-|.++-..+.||+++....... .+. ..+|.+..
T Consensus 52 i~~i~~-rhE~~A~~~Adgyar~t-g~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~G~~~~~~~~~--~~~q~~d~ 127 (585)
T PLN02470 52 IRNVLC-RHEQGEVFAAEGYAKAS-GKVGVCIATSGPGATNLVTGLADALLDSVPLVAITGQVPRRMIGT--DAFQETPI 127 (585)
T ss_pred ceEEEe-ccHHHHHHHHHHHHHHh-CCCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEecCCChhhcCC--CcCcccch
Confidence 466666 78999999999999864 2444443 455545566666777777899999985222211 232 23676777
Q ss_pred hHHhhcCCCcEEEecCChHHHHHHHHHHHHc----CCCcEEEEEcCC
Q 006816 443 LAGLRAVPRLLAFRPADGNETAGSYRVAIAN----RDVPSVIALSRQ 485 (630)
Q Consensus 443 ~a~l~~iP~l~v~~P~d~~e~~~~l~~a~~~----~~~P~~ir~~r~ 485 (630)
.++++.+=... +...++.++..+++.|++. +++|++|-+|..
T Consensus 128 ~~l~~~~tk~~-~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~D 173 (585)
T PLN02470 128 VEVTRSITKHN-YLVMDVEDIPRVIREAFFLASSGRPGPVLVDIPKD 173 (585)
T ss_pred hhhhhhheEEE-EEcCCHHHHHHHHHHHHHHhcCCCCCeEEEEecCc
Confidence 77787764432 2345778888888777653 469999999975
No 247
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=86.97 E-value=7.8 Score=36.24 Aligned_cols=112 Identities=14% Similarity=0.059 Sum_probs=66.4
Q ss_pred CCCCCccccccchHHHHH----HHHHHHhcCCCCceEeee--hHHHHHhhHHHHHHhccc-CCCeEEEE-ecCCCC-CCC
Q 006816 362 SPWGRNIRYGVREHAMAG----ISNGVALHGGGLIPFAAT--FLIFSDYMKNSIRLSALS-HAGVIYIL-THDSIG-LGE 432 (630)
Q Consensus 362 ~~p~R~~~~gIaE~~~vg----~a~GlA~~G~~~~pv~~~--~~~F~~~a~dqi~~~a~~-~~pv~~v~-~~~g~~-~g~ 432 (630)
..|.+|+. ...+| .|.|+++.- -+|++.+ -..|+.-.-+ +...... ++|++++. ...+++ .+
T Consensus 33 ~~~~~~~~-----~gsmG~~lp~AiGa~~a~--~~~Vv~i~GDG~f~m~~~e-l~t~~~~~~~~i~~vV~nN~~~g~~~- 103 (157)
T cd02001 33 DRDGHFYM-----LGSMGLAGSIGLGLALGL--SRKVIVVDGDGSLLMNPGV-LLTAGEFTPLNLILVVLDNRAYGSTG- 103 (157)
T ss_pred cCCCCEEe-----ecchhhHHHHHHHHHhcC--CCcEEEEECchHHHhcccH-HHHHHHhcCCCEEEEEEeCccccccC-
Confidence 45788875 34444 677777764 3677765 5666543222 3333334 58987776 444433 22
Q ss_pred CCCCCCChhhhHHhhcCCCcEEEecCChHHHHHHHHHHHHcCCCcEEEEEc
Q 006816 433 DGPTHQPVEQLAGLRAVPRLLAFRPADGNETAGSYRVAIANRDVPSVIALS 483 (630)
Q Consensus 433 ~G~tHq~~~d~a~l~~iP~l~v~~P~d~~e~~~~l~~a~~~~~~P~~ir~~ 483 (630)
.-.+++..-|.+-+..-=|+..+...+..|+...++.+++. ++|++|-+.
T Consensus 104 ~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~-~gp~vi~v~ 153 (157)
T cd02001 104 GQPTPSSNVNLEAWAAACGYLVLSAPLLGGLGSEFAGLLAT-TGPTLLHAP 153 (157)
T ss_pred CcCCCCCCCCHHHHHHHCCCceEEcCCHHHHHHHHHHHHhC-CCCEEEEEE
Confidence 11233322233333333356666778999999999999986 899998643
No 248
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=86.96 E-value=3.9 Score=46.84 Aligned_cols=116 Identities=17% Similarity=0.165 Sum_probs=76.4
Q ss_pred CCccccccchHHHHHHHHHHHhcCCCCceEee-ehHHHHHhhHHHHHHhcccCCCeEEEEecCCCC-CCCCCCCCCChhh
Q 006816 365 GRNIRYGVREHAMAGISNGVALHGGGLIPFAA-TFLIFSDYMKNSIRLSALSHAGVIYILTHDSIG-LGEDGPTHQPVEQ 442 (630)
Q Consensus 365 ~R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~-~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~-~g~~G~tHq~~~d 442 (630)
=|++.+ -.|++++.+|.|+|..- |...++. ++.+=+..+..-|.++-..+.||+++....... .+. | .+|.++.
T Consensus 43 i~~v~~-rhE~~A~~mAdgyar~t-g~~gv~~~t~GpG~~n~l~gia~A~~~~~Pvl~i~G~~~~~~~~~-~-~~q~~d~ 118 (572)
T PRK08979 43 IEHILV-RHEQAAVHMADGYARAT-GKVGVVLVTSGPGATNTITGIATAYMDSIPMVVLSGQVPSNLIGN-D-AFQECDM 118 (572)
T ss_pred CeEEEe-CcHHHHHHHHHHHHHHh-CCCeEEEECCCchHhHHHHHHHHHhhcCCCEEEEecCCCccccCC-C-CCcccch
Confidence 366666 88999999999999864 2554544 344433445566666667799999985322222 232 2 4676777
Q ss_pred hHHhhcCCCcEEEecCChHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 006816 443 LAGLRAVPRLLAFRPADGNETAGSYRVAIA----NRDVPSVIALSRQ 485 (630)
Q Consensus 443 ~a~l~~iP~l~v~~P~d~~e~~~~l~~a~~----~~~~P~~ir~~r~ 485 (630)
.++++.+=-. .+...++.++...++.|++ ...+|++|-+|+.
T Consensus 119 ~~~~~~itk~-~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 164 (572)
T PRK08979 119 IGISRPVVKH-SFLVKDAEDIPEIIKKAFYIASTGRPGPVVIDLPKD 164 (572)
T ss_pred hHHhhhceeE-EEecCCHHHHHHHHHHHHHHHhCCCCCcEEEecCHh
Confidence 7788876443 3334467777777777765 2469999999875
No 249
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=86.78 E-value=11 Score=36.15 Aligned_cols=118 Identities=12% Similarity=0.023 Sum_probs=69.5
Q ss_pred CCCCCcccccc-c-hHHHHHHHHHHHhcCCCCceEeee--hHHHHHhhHHHHHHhcccCCCeEEEEecCCC-CC------
Q 006816 362 SPWGRNIRYGV-R-EHAMAGISNGVALHGGGLIPFAAT--FLIFSDYMKNSIRLSALSHAGVIYILTHDSI-GL------ 430 (630)
Q Consensus 362 ~~p~R~~~~gI-a-E~~~vg~a~GlA~~G~~~~pv~~~--~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~-~~------ 430 (630)
..|.+|+..+- . =...++.|.|.++.. +-++++.+ -..|... ...|..++..++|++++....+. +.
T Consensus 38 ~~~~~~~~~~~~g~mG~~lp~aiGa~la~-~~~~vv~i~GDG~f~~~-~~eL~ta~~~~lpi~ivV~nN~~~~~~~~~~~ 115 (186)
T cd02015 38 KKPRSWLTSGGLGTMGFGLPAAIGAKVAR-PDKTVICIDGDGSFQMN-IQELATAAQYNLPVKIVILNNGSLGMVRQWQE 115 (186)
T ss_pred CCCCeEEeCCCccchhchHHHHHHHHHhC-CCCeEEEEEcccHHhcc-HHHHHHHHHhCCCeEEEEEECCccHHHHHHHH
Confidence 35788886543 1 122445677777654 23555553 4566643 33366667778998887755543 21
Q ss_pred ---CCC-CCCCC-Chhhh-HHhhcCCCcEEEecCChHHHHHHHHHHHHcCCCcEEEEEc
Q 006816 431 ---GED-GPTHQ-PVEQL-AGLRAVPRLLAFRPADGNETAGSYRVAIANRDVPSVIALS 483 (630)
Q Consensus 431 ---g~~-G~tHq-~~~d~-a~l~~iP~l~v~~P~d~~e~~~~l~~a~~~~~~P~~ir~~ 483 (630)
+.. ..++. ...|. .+.+++ |+.-+.-.+..|++..++.+++. ++|++|-+.
T Consensus 116 ~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~-~~p~liev~ 172 (186)
T cd02015 116 LFYEGRYSHTTLDSNPDFVKLAEAY-GIKGLRVEKPEELEAALKEALAS-DGPVLLDVL 172 (186)
T ss_pred HHcCCceeeccCCCCCCHHHHHHHC-CCceEEeCCHHHHHHHHHHHHhC-CCCEEEEEE
Confidence 110 11111 11232 344444 66677778899999999999986 899999543
No 250
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=86.78 E-value=6.8 Score=41.98 Aligned_cols=100 Identities=15% Similarity=0.039 Sum_probs=63.3
Q ss_pred hhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEE-cccccCchhHHHHH-HHhHHcC--------CCcEEEEEECCCC
Q 006816 107 QGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIM-SDGCAMEGISHEAA-ALAAHWK--------LNKLTLIYDDNHN 176 (630)
Q Consensus 107 ~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~-GDG~~~eG~~~eal-~~a~~~~--------L~~li~i~~~N~~ 176 (630)
+.++.|.|+|++- .++++++. .|-.. ..++-+ +.++.++ +| ++++..+...
T Consensus 85 ~~vg~AaGlA~~G---------------~~P~v~~~~~~f~~---ra~dQi~~dva~~~~~~~g~~~~p-V~i~~~~G~~ 145 (356)
T PLN02683 85 GFTGIGVGAAYAG---------------LKPVVEFMTFNFSM---QAIDHIINSAAKTNYMSAGQISVP-IVFRGPNGAA 145 (356)
T ss_pred HHHHHHHHHHHCC---------------CEEEEEEehhhHHH---HHHHHHHHHHHHhccccCCCccCC-EEEEEeCCCC
Confidence 4556777777754 24454443 32222 455554 4556555 77 7777766432
Q ss_pred cccccccccChhcHHHHHHhC-CCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEE
Q 006816 177 TIDGPTSLVLSEDISARFKSL-GWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRV 233 (630)
Q Consensus 177 ~i~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~ 233 (630)
.-.+.+... . + ...+++. |+.++.. . |..++..+++.+.+ .++|++|..
T Consensus 146 ~g~G~tH~~-~-~-~a~lr~iPnl~V~~P---a-d~~e~~~~l~~a~~-~~gPv~ir~ 195 (356)
T PLN02683 146 AGVGAQHSQ-C-F-AAWYSSVPGLKVLAP---Y-SSEDARGLLKAAIR-DPDPVVFLE 195 (356)
T ss_pred CCCCCcccc-C-H-HHHHhcCCCCEEEEe---C-CHHHHHHHHHHHHh-CCCcEEEEE
Confidence 223344322 2 2 4778887 9999999 5 89999999998886 689999864
No 251
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=86.77 E-value=2.3 Score=46.78 Aligned_cols=117 Identities=15% Similarity=0.046 Sum_probs=74.9
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCceEe-eehHHHHHhhHHHHHHhcccCCCeEEEEecCCCC-CCCCCCCCCChhhh
Q 006816 366 RNIRYGVREHAMAGISNGVALHGGGLIPFA-ATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIG-LGEDGPTHQPVEQL 443 (630)
Q Consensus 366 R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~-~~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~-~g~~G~tHq~~~d~ 443 (630)
|++.+ .-|++++-+|-|+|..- |...++ .++.+=+..++.-|..+...+.||+++....... .+. | .+|.+.+.
T Consensus 40 ~~v~~-~hE~~A~~mAdgyar~t-g~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~g~~~~~~~~~-~-~~q~~d~~ 115 (432)
T TIGR00173 40 RVHVH-IDERSAGFFALGLAKAS-GRPVAVVCTSGTAVANLLPAVIEASYSGVPLIVLTADRPPELRGC-G-ANQTIDQP 115 (432)
T ss_pred EEEEe-cCCccHHHHHHHHHhcc-CCCEEEEECCcchHhhhhHHHHHhcccCCcEEEEeCCCCHHHhCC-C-CCcccchh
Confidence 45544 78999999999999975 233333 3455544566667777777899999985222111 232 2 36777888
Q ss_pred HHhhcCCCcEEE--ecCC-------hHHHHHHHHHHHHcCCCcEEEEEcCCC
Q 006816 444 AGLRAVPRLLAF--RPAD-------GNETAGSYRVAIANRDVPSVIALSRQK 486 (630)
Q Consensus 444 a~l~~iP~l~v~--~P~d-------~~e~~~~l~~a~~~~~~P~~ir~~r~~ 486 (630)
.+++.+=-...- .|.+ +..+..+++.|+..+.+|++|-+|..-
T Consensus 116 ~~~~~~tk~~~~v~~~~~~~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~dv 167 (432)
T TIGR00173 116 GLFGSYVRWSLDLPLPEADEPLAYLRSTVDRAVAQAQGPPPGPVHINVPFRE 167 (432)
T ss_pred hHHhhccceeeeCCCCCccccHHHHHHHHHHHHHHhhCCCCCCEEEeCCCCC
Confidence 888877654333 3443 234555666666545799999998653
No 252
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=86.75 E-value=4.6 Score=46.18 Aligned_cols=117 Identities=15% Similarity=0.105 Sum_probs=77.5
Q ss_pred CCccccccchHHHHHHHHHHHhcCCCCceEee-ehHHHHHhhHHHHHHhcccCCCeEEEEecCCCC-CCCCCCCCCChhh
Q 006816 365 GRNIRYGVREHAMAGISNGVALHGGGLIPFAA-TFLIFSDYMKNSIRLSALSHAGVIYILTHDSIG-LGEDGPTHQPVEQ 442 (630)
Q Consensus 365 ~R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~-~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~-~g~~G~tHq~~~d 442 (630)
-|++.+ --|++++.+|-|+|... |...++. ++.+=+..+..-|.++-..+.||+++....... .+. ..+|.+..
T Consensus 53 i~~i~~-rhE~~A~~mAdgyar~t-g~~gv~~~t~GpG~~N~~~gla~A~~~~~Pvl~I~G~~~~~~~~~--~~~q~~d~ 128 (570)
T PRK06725 53 LKHILT-RHEQAAIHAAEGYARAS-GKVGVVFATSGPGATNLVTGLADAYMDSIPLVVITGQVATPLIGK--DGFQEADV 128 (570)
T ss_pred CcEEEe-cCHHHHHHHHHHHHHHh-CCCeEEEECCCccHHHHHHHHHHHhhcCcCEEEEecCCCcccccC--CCCcccch
Confidence 466665 68999999999999764 2444443 454444456666666667799999985222222 232 24676777
Q ss_pred hHHhhcCCCcEEEecCChHHHHHHHHHHHHc----CCCcEEEEEcCCC
Q 006816 443 LAGLRAVPRLLAFRPADGNETAGSYRVAIAN----RDVPSVIALSRQK 486 (630)
Q Consensus 443 ~a~l~~iP~l~v~~P~d~~e~~~~l~~a~~~----~~~P~~ir~~r~~ 486 (630)
..+++.+=-. .+...+++++..+++.|++. .++|++|-+|+.-
T Consensus 129 ~~l~~~itk~-~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv 175 (570)
T PRK06725 129 VGITVPVTKH-NYQVRDVNQLSRIVQEAFYIAESGRPGPVLIDIPKDV 175 (570)
T ss_pred hhhhhcccee-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEccccch
Confidence 7788876543 33456778888877777653 4699999998753
No 253
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=86.68 E-value=6 Score=40.18 Aligned_cols=104 Identities=19% Similarity=0.187 Sum_probs=65.8
Q ss_pred HHHHHHHHHhc----CCCCceEeee-hHHHHH-hhHHHHHHhcccCCC-eEEEEecCCCCCCCCCCCC--CChhhhH-Hh
Q 006816 377 MAGISNGVALH----GGGLIPFAAT-FLIFSD-YMKNSIRLSALSHAG-VIYILTHDSIGLGEDGPTH--QPVEQLA-GL 446 (630)
Q Consensus 377 ~vg~a~GlA~~----G~~~~pv~~~-~~~F~~-~a~dqi~~~a~~~~p-v~~v~~~~g~~~g~~G~tH--q~~~d~a-~l 446 (630)
.++.|.|+|+. +...+.++.+ -..|.. ..++.+..++..++| ++++....++ +.+++++ ...+|++ .+
T Consensus 110 gl~~avG~Ala~~~~~~~~~v~~i~GDG~~~~G~~~eal~~a~~~~l~~li~vvdnN~~--~~~~~~~~~~~~~~~~~~~ 187 (255)
T cd02012 110 GLSVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLIAIVDSNRI--QIDGPTDDILFTEDLAKKF 187 (255)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEECcccccccHHHHHHHHHHHcCCCcEEEEEECCCc--cccCcHhhccCchhHHHHH
Confidence 34567776664 1114444433 667765 567888877788886 6666544444 4455553 2334443 44
Q ss_pred hcCCCcEEEecC--ChHHHHHHHHHHHHcCCCcEEEEEc
Q 006816 447 RAVPRLLAFRPA--DGNETAGSYRVAIANRDVPSVIALS 483 (630)
Q Consensus 447 ~~iP~l~v~~P~--d~~e~~~~l~~a~~~~~~P~~ir~~ 483 (630)
+++ |+.++.-. |..++...++.+.+..++|++|...
T Consensus 188 ~a~-G~~~~~v~G~d~~~l~~al~~a~~~~~~P~~I~~~ 225 (255)
T cd02012 188 EAF-GWNVIEVDGHDVEEILAALEEAKKSKGKPTLIIAK 225 (255)
T ss_pred HHc-CCeEEEECCCCHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 444 88887766 8999999999988744789988653
No 254
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=86.57 E-value=7 Score=38.05 Aligned_cols=100 Identities=7% Similarity=-0.013 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhcCC---CCceEeee--hHHHHH-hhHHHHHHhcccCCCeEEEEecCCCCCCCCCCCCCChhhhHHhhcC
Q 006816 376 AMAGISNGVALHGG---GLIPFAAT--FLIFSD-YMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAV 449 (630)
Q Consensus 376 ~~vg~a~GlA~~G~---~~~pv~~~--~~~F~~-~a~dqi~~~a~~~~pv~~v~~~~g~~~g~~G~tHq~~~d~a~l~~i 449 (630)
..+++|+|+|+.-+ .-++++++ -..|.. ..++.+..++..+.|++++....+. +.+++|- ... ..+++
T Consensus 79 ~gl~~A~G~Ala~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~~~li~vvdnN~~--~~~~~~~-~~~--~~~~a- 152 (195)
T cd02007 79 TSISAALGMAVARDLKGKKRKVIAVIGDGALTGGMAFEALNNAGYLKSNMIVILNDNEM--SISPNVG-TPG--NLFEE- 152 (195)
T ss_pred hhHHHHHHHHHHHHHhCCCCeEEEEEcccccccChHHHHHHHHHHhCCCEEEEEECCCc--ccCCCCC-CHH--HHHHh-
Confidence 34456777776420 02344444 344443 5677787776669999998755554 3445543 222 34444
Q ss_pred CCcEEE---ecCChHHHHHHHHHHHHcCCCcEEEEE
Q 006816 450 PRLLAF---RPADGNETAGSYRVAIANRDVPSVIAL 482 (630)
Q Consensus 450 P~l~v~---~P~d~~e~~~~l~~a~~~~~~P~~ir~ 482 (630)
-|+.+. -..|..++..+++.+.+. ++|++|..
T Consensus 153 ~G~~~~~~vdG~d~~~l~~a~~~a~~~-~~P~~I~~ 187 (195)
T cd02007 153 LGFRYIGPVDGHNIEALIKVLKEVKDL-KGPVLLHV 187 (195)
T ss_pred cCCCccceECCCCHHHHHHHHHHHHhC-CCCEEEEE
Confidence 355444 445677777777777765 78999864
No 255
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=86.57 E-value=4.9 Score=46.45 Aligned_cols=116 Identities=15% Similarity=0.129 Sum_probs=76.6
Q ss_pred CCccccccchHHHHHHHHHHHhcCCCCceEee-ehHHHHHhhHHHHHHhcccCCCeEEEEecCCCC-CCCCCCCCCChhh
Q 006816 365 GRNIRYGVREHAMAGISNGVALHGGGLIPFAA-TFLIFSDYMKNSIRLSALSHAGVIYILTHDSIG-LGEDGPTHQPVEQ 442 (630)
Q Consensus 365 ~R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~-~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~-~g~~G~tHq~~~d 442 (630)
=||+.+ --|+.++.+|.|.|... |...++. +..+=+.-++.-|.++...+.||+++....... .+. ..+|.+..
T Consensus 61 i~~i~~-rhE~~Aa~aA~gyar~t-gk~gv~~~t~GPG~~n~l~gl~~A~~d~~Pvl~i~G~~~~~~~~~--~~~Qe~d~ 136 (616)
T PRK07418 61 LKHILV-RHEQGAAHAADGYARAT-GKVGVCFGTSGPGATNLVTGIATAQMDSVPMVVITGQVPRPAIGT--DAFQETDI 136 (616)
T ss_pred ceEEEe-ccHHHHHHHHHHHHHHh-CCCeEEEECCCccHHHHHHHHHHHHhcCCCEEEEecCCCccccCC--CCcccccH
Confidence 467777 88999999999999865 2444443 345544456666777777899999985222222 232 23566666
Q ss_pred hHHhhcCCCcEEEecCChHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 006816 443 LAGLRAVPRLLAFRPADGNETAGSYRVAIA----NRDVPSVIALSRQ 485 (630)
Q Consensus 443 ~a~l~~iP~l~v~~P~d~~e~~~~l~~a~~----~~~~P~~ir~~r~ 485 (630)
..+++.+--. .....++.++..+++.|++ .+.+|++|.+|+.
T Consensus 137 ~~~~~~vtk~-~~~v~~~~~i~~~l~~A~~~A~~~~~GPv~l~iP~D 182 (616)
T PRK07418 137 FGITLPIVKH-SYVVRDPSDMARIVAEAFHIASSGRPGPVLIDIPKD 182 (616)
T ss_pred HHHhhhccee-EEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEecchh
Confidence 6777755422 2346677777777776665 3469999999874
No 256
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=86.56 E-value=3.9 Score=46.66 Aligned_cols=116 Identities=16% Similarity=0.139 Sum_probs=75.4
Q ss_pred CCccccccchHHHHHHHHHHHhcCCCCceEee-ehHHHHHhhHHHHHHhcccCCCeEEEEecCCCC-CCCCCCCCCChhh
Q 006816 365 GRNIRYGVREHAMAGISNGVALHGGGLIPFAA-TFLIFSDYMKNSIRLSALSHAGVIYILTHDSIG-LGEDGPTHQPVEQ 442 (630)
Q Consensus 365 ~R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~-~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~-~g~~G~tHq~~~d 442 (630)
=+++.+ ..|++++.+|-|+|..- |...++. ++.+=+..+..-|.++...+.||+++....... .+. + .+|.++.
T Consensus 46 i~~v~~-~hE~~A~~~Adgyar~t-g~~~v~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~G~~~~~~~~~-~-~~q~~d~ 121 (561)
T PRK06048 46 LRHILV-RHEQAAAHAADGYARAT-GKVGVCVATSGPGATNLVTGIATAYMDSVPIVALTGQVPRSMIGN-D-AFQEADI 121 (561)
T ss_pred CeEEEe-ccHHHHHHHHHHHHHHh-CCCeEEEECCCCcHHHHHHHHHHHhhcCCCEEEEeccCCccccCC-C-Cccccch
Confidence 466666 88999999999999865 2333333 454444556667777778899999985222222 232 2 3555666
Q ss_pred hHHhhcCCCcEEEecCChHHHHHHHHHHHHc----CCCcEEEEEcCC
Q 006816 443 LAGLRAVPRLLAFRPADGNETAGSYRVAIAN----RDVPSVIALSRQ 485 (630)
Q Consensus 443 ~a~l~~iP~l~v~~P~d~~e~~~~l~~a~~~----~~~P~~ir~~r~ 485 (630)
.++++.+=-.. +.-.++.++..+++.|++. .++|+||-+|+.
T Consensus 122 ~~~~~~itk~s-~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~d 167 (561)
T PRK06048 122 TGITMPITKHN-YLVQDAKDLPRIIKEAFHIASTGRPGPVLIDLPKD 167 (561)
T ss_pred hhhccCcceEE-EEeCCHHHHHHHHHHHHHHHhcCCCCeEEEecChh
Confidence 67777664322 2345667777777776652 469999999875
No 257
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=86.55 E-value=4.1 Score=42.51 Aligned_cols=104 Identities=12% Similarity=0.033 Sum_probs=64.2
Q ss_pred HHHHHHHHHhcCCCCceEeee--hHHHHHhhHHHHHHhcccCCCeEEEEecCCCCCCCCCC----C----------CC--
Q 006816 377 MAGISNGVALHGGGLIPFAAT--FLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGP----T----------HQ-- 438 (630)
Q Consensus 377 ~vg~a~GlA~~G~~~~pv~~~--~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~~g~~G~----t----------Hq-- 438 (630)
.+.+|.|.++.. +-++|+.+ -.+|+......+..++..++|+++++-..+. +|.-+. | .+
T Consensus 75 alpaAiGaklA~-pd~~VV~i~GDG~~~~mg~~eL~tA~r~nl~i~vIV~NN~~-YG~t~gQ~s~t~~~g~~~~~~~~g~ 152 (301)
T PRK05778 75 AIAFATGAKLAN-PDLEVIVVGGDGDLASIGGGHFIHAGRRNIDITVIVENNGI-YGLTKGQASPTTPEGSKTKTAPYGN 152 (301)
T ss_pred HHHHHHHHHHHC-CCCcEEEEeCccHHHhccHHHHHHHHHHCCCcEEEEEeCch-hhcccCcccCCcCCCcccccccCCC
Confidence 455677777664 24555553 5666556666676677889998887744332 221110 0 01
Q ss_pred --ChhhhHHhhcCCCcEEE---ecCChHHHHHHHHHHHHcCCCcEEEEEc
Q 006816 439 --PVEQLAGLRAVPRLLAF---RPADGNETAGSYRVAIANRDVPSVIALS 483 (630)
Q Consensus 439 --~~~d~a~l~~iP~l~v~---~P~d~~e~~~~l~~a~~~~~~P~~ir~~ 483 (630)
...|+.-+..--|...+ ...+..|+..+++.|+++ ++|++|-+-
T Consensus 153 ~~~~~d~~~lA~a~G~~~va~~~v~~~~eL~~ai~~A~~~-~GpalIeV~ 201 (301)
T PRK05778 153 IEPPIDPCALALAAGATFVARSFAGDVKQLVELIKKAISH-KGFAFIDVL 201 (301)
T ss_pred cCCCCCHHHHHHHCCCCEEEEeccCCHHHHHHHHHHHHhC-CCCEEEEEc
Confidence 11233333333355544 689999999999999997 999998653
No 258
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=85.81 E-value=9.6 Score=35.84 Aligned_cols=88 Identities=18% Similarity=0.210 Sum_probs=53.8
Q ss_pred ceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCC--cccccccccChhcHHHHHHhC-CCeEEEEeCCCCCHH
Q 006816 136 HRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHN--TIDGPTSLVLSEDISARFKSL-GWNTIMVENIHDNLS 212 (630)
Q Consensus 136 ~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~--~i~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~d~~ 212 (630)
+.+++.... -+. ...+.+.+...++ ++.+++..+.+. +..+++. ...+...+++.+ |+.++.. . |..
T Consensus 74 ~pi~~~~~~-f~~--~a~~~~~~~~~~~-~~~~v~~~~~g~~~g~~G~tH--~~~~~~~~~~~iP~~~v~~P---~-~~~ 143 (168)
T smart00861 74 RPVVAIFFT-FFD--RAKDQIRSDGAMG-RVPVVVRHDSGGGVGEDGPTH--HSQEDEALLRAIPGLKVVAP---S-DPA 143 (168)
T ss_pred CcEEEeeHH-HHH--HHHHHHHHhCccc-CCCEEEEecCccccCCCCccc--cchhHHHHHhcCCCcEEEec---C-CHH
Confidence 345555533 223 5778888888887 444455554333 3334433 222334456655 8888888 5 999
Q ss_pred HHHHHHHHHHhcCCCcEEEEE
Q 006816 213 SFKEALMAAANETKKPTFIRV 233 (630)
Q Consensus 213 ~l~~al~~a~~~~~~P~~i~~ 233 (630)
++...++.+.+..++|.+|..
T Consensus 144 e~~~~l~~a~~~~~~p~~i~~ 164 (168)
T smart00861 144 EAKGLLRAAIRRDDGPPVIRL 164 (168)
T ss_pred HHHHHHHHHHhCCCCCEEEEe
Confidence 999999988753468987764
No 259
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=85.73 E-value=3.8 Score=42.29 Aligned_cols=106 Identities=11% Similarity=0.034 Sum_probs=66.1
Q ss_pred HHHHHHHHHhcCCCCceEeee--hHHHHHhhHHHHHHhcccCCCeEEEEecCC-CC-CC-CCCC---------C-----C
Q 006816 377 MAGISNGVALHGGGLIPFAAT--FLIFSDYMKNSIRLSALSHAGVIYILTHDS-IG-LG-EDGP---------T-----H 437 (630)
Q Consensus 377 ~vg~a~GlA~~G~~~~pv~~~--~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g-~~-~g-~~G~---------t-----H 437 (630)
.+.+|.|..+.. +-+||+.+ -.+|.......+-.++..++|+++++-..+ ++ .+ ..-+ + -
T Consensus 65 alp~AiGaklA~-pd~~VVai~GDG~~~~iG~~eL~tA~r~nl~i~~IV~NN~~Yg~t~~Q~s~~t~~g~~~~~~p~g~~ 143 (280)
T PRK11869 65 AIPAATAVKATN-PELTVIAEGGDGDMYAEGGNHLIHAIRRNPDITVLVHNNQVYGLTKGQASPTTLKGFKTPTQPWGVF 143 (280)
T ss_pred HHHHHHHHHHHC-CCCcEEEEECchHHhhCcHHHHHHHHHhCcCcEEEEEECHHHhhhcceecCCCCCCcccccCCCCcc
Confidence 456777777766 34666654 566666667777777888999888874443 22 11 1100 0 0
Q ss_pred CChhhhHHhhcCCCcEEEe---cCChHHHHHHHHHHHHcCCCcEEEEEcC
Q 006816 438 QPVEQLAGLRAVPRLLAFR---PADGNETAGSYRVAIANRDVPSVIALSR 484 (630)
Q Consensus 438 q~~~d~a~l~~iP~l~v~~---P~d~~e~~~~l~~a~~~~~~P~~ir~~r 484 (630)
..--|+.-+..--|...++ +.++.|+...++.|++. ++|++|-+-.
T Consensus 144 ~~~~D~~~lA~a~G~~~va~~~~~~~~~l~~~i~~Al~~-~Gp~lIeV~~ 192 (280)
T PRK11869 144 EEPFNPIALAIALDASFVARTFSGDIEETKEILKEAIKH-KGLAIVDIFQ 192 (280)
T ss_pred CCCCCHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHHHhC-CCCEEEEEEC
Confidence 0111333333333444555 99999999999999997 9999996544
No 260
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=85.54 E-value=6.9 Score=41.40 Aligned_cols=62 Identities=11% Similarity=0.065 Sum_probs=43.4
Q ss_pred CCCcEEEEEECCCCcccccccccChhcHHHHHHhC-CCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEE
Q 006816 163 KLNKLTLIYDDNHNTIDGPTSLVLSEDISARFKSL-GWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRV 233 (630)
Q Consensus 163 ~L~~li~i~~~N~~~i~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~ 233 (630)
++| +++...+..++-.+++... .+..++++. |+.++.. . |..++..+++.+.+ .++|++|..
T Consensus 110 ~v~-vv~~~~~g~~~~~G~tH~~---~~ea~~r~iP~l~V~~P---~-d~~e~~~~l~~a~~-~~~Pv~i~~ 172 (327)
T PRK09212 110 KCP-IVFRGPNGAAARVAAQHSQ---CYAAWYSHIPGLKVVAP---Y-FAADCKGLLKTAIR-DPNPVIFLE 172 (327)
T ss_pred Ccc-EEEEeCCCCCCCCCccccc---CHHHHHhcCCCCEEEee---C-CHHHHHHHHHHHHh-CCCcEEEEE
Confidence 455 5555555444445554422 233788877 9999998 5 99999999998887 689999854
No 261
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=85.30 E-value=9.2 Score=44.16 Aligned_cols=89 Identities=12% Similarity=0.149 Sum_probs=59.4
Q ss_pred eEEEEEcccccCchhHHHHH-HHhHHcCCCcEEEEEECCCCc-ccccccccChhcHHHHHHhC-CCeEEEEeCCCCCHHH
Q 006816 137 RTYCIMSDGCAMEGISHEAA-ALAAHWKLNKLTLIYDDNHNT-IDGPTSLVLSEDISARFKSL-GWNTIMVENIHDNLSS 213 (630)
Q Consensus 137 ~v~~~~GDG~~~eG~~~eal-~~a~~~~L~~li~i~~~N~~~-i~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~d~~~ 213 (630)
+.||.+ -+.|.. ..++-+ +.++..++| ++++.+..++. .++++. +..+|+ ..++.. |+.++.. . |..+
T Consensus 377 ~Pvv~~-~a~Fl~-ra~dQi~~~~a~~~lp-V~i~~~~~G~~g~dG~tH-~~~~di-a~lr~iPgl~V~~P---s-d~~e 447 (617)
T TIGR00204 377 KPFVAI-YSTFLQ-RAYDQVVHDVCIQKLP-VLFAIDRAGIVGADGETH-QGAFDI-SYLRCIPNMVIMAP---S-DENE 447 (617)
T ss_pred EEEEEe-cHHHHH-HHHHHHHHHHHhcCCC-EEEEEECCCcCCCCCccc-ccchHH-HHHhcCCCcEEEee---C-CHHH
Confidence 444444 566654 566665 557888988 77888877663 223332 223454 456665 9999999 5 9999
Q ss_pred HHHHHHHHHhcCCCcEEEEEe
Q 006816 214 FKEALMAAANETKKPTFIRVK 234 (630)
Q Consensus 214 l~~al~~a~~~~~~P~~i~~~ 234 (630)
+..+++.+.+..++|++|...
T Consensus 448 ~~~~l~~a~~~~~~Pv~ir~~ 468 (617)
T TIGR00204 448 LRQMLYTGYHYDDGPIAVRYP 468 (617)
T ss_pred HHHHHHHHHhCCCCCEEEEEc
Confidence 999999887623499988653
No 262
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=85.26 E-value=4.7 Score=39.23 Aligned_cols=118 Identities=11% Similarity=-0.074 Sum_probs=68.7
Q ss_pred CCCCCcccccc-ch-HHHHHHHHHHHhcCCCCceEeee--hHHHHHhhHHHHHHhcccCCCeEEEE-ecCCCCC-C----
Q 006816 362 SPWGRNIRYGV-RE-HAMAGISNGVALHGGGLIPFAAT--FLIFSDYMKNSIRLSALSHAGVIYIL-THDSIGL-G---- 431 (630)
Q Consensus 362 ~~p~R~~~~gI-aE-~~~vg~a~GlA~~G~~~~pv~~~--~~~F~~~a~dqi~~~a~~~~pv~~v~-~~~g~~~-g---- 431 (630)
..|.+|+..+- .= ...+..|.|.++.. +-+|++++ -..|... ...|..+...++|++++. ...+++. .
T Consensus 41 ~~~~~~~~~~~~g~mG~~lpaaiGa~la~-p~r~vv~i~GDG~f~m~-~~eL~Ta~~~~lpvi~vV~NN~~yg~~~~~q~ 118 (196)
T cd02013 41 EKPRSFIAPLSFGNCGYALPAIIGAKAAA-PDRPVVAIAGDGAWGMS-MMEIMTAVRHKLPVTAVVFRNRQWGAEKKNQV 118 (196)
T ss_pred CCCCeEEcCCCCcccccHHHHHHHHHHhC-CCCcEEEEEcchHHhcc-HHHHHHHHHhCCCeEEEEEECchhHHHHHHHH
Confidence 45788886531 11 22445677766654 24566654 5666653 333555566689988877 3344431 1
Q ss_pred -CCC-----CCCCChhhhHHhhcCCCcEEEecCChHHHHHHHHHHHH---cCCCcEEEEEc
Q 006816 432 -EDG-----PTHQPVEQLAGLRAVPRLLAFRPADGNETAGSYRVAIA---NRDVPSVIALS 483 (630)
Q Consensus 432 -~~G-----~tHq~~~d~a~l~~iP~l~v~~P~d~~e~~~~l~~a~~---~~~~P~~ir~~ 483 (630)
..+ ..+....-..+.+++ |+.-+.-.++.|+..+++.+++ . ++|++|-+.
T Consensus 119 ~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~~-~~p~liev~ 177 (196)
T cd02013 119 DFYNNRFVGTELESESFAKIAEAC-GAKGITVDKPEDVGPALQKAIAMMAE-GKTTVIEIV 177 (196)
T ss_pred HHcCCCcccccCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHhcCCC-CCeEEEEEE
Confidence 001 011122112233333 6777788899999999999997 6 899998653
No 263
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=85.08 E-value=7.2 Score=43.31 Aligned_cols=100 Identities=16% Similarity=0.077 Sum_probs=65.1
Q ss_pred hhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEE-cccccCchhHHHHH-HHhH--------HcCCCcEEEEEECCCC
Q 006816 107 QGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIM-SDGCAMEGISHEAA-ALAA--------HWKLNKLTLIYDDNHN 176 (630)
Q Consensus 107 ~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~-GDG~~~eG~~~eal-~~a~--------~~~L~~li~i~~~N~~ 176 (630)
..++.|.|+|++. -+.++++. .+-.+ ..++-+ +.++ .+++| ++|+..+.+.
T Consensus 200 ~~vg~AaGlA~~G---------------~rPiv~~~~~~f~~---ra~dQI~n~~ak~~~~sgg~~~~p-Vv~~g~~G~~ 260 (464)
T PRK11892 200 GFAGIGVGAAFAG---------------LKPIVEFMTFNFAM---QAIDQIINSAAKTLYMSGGQMGCP-IVFRGPNGAA 260 (464)
T ss_pred HHHHHHHHHHhCC---------------CEEEEEEehHHHHH---HHHHHHHHHHhHHhhhcCCccCCC-EEEEecCCCC
Confidence 3456778888743 24455454 23332 233433 4555 88888 7777776665
Q ss_pred cccccccccChhcHHHHHHhC-CCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEE
Q 006816 177 TIDGPTSLVLSEDISARFKSL-GWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRV 233 (630)
Q Consensus 177 ~i~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~ 233 (630)
+-.+. ....+...+++.. |+.++.. . |..+....++.+.+ .++|++|.-
T Consensus 261 ~~~G~---hhs~~d~a~~~~iPgl~V~~P---~-d~~d~~~ll~~ai~-~~~Pv~ile 310 (464)
T PRK11892 261 ARVAA---QHSQDYAAWYSHIPGLKVVAP---Y-SAADAKGLLKAAIR-DPNPVIFLE 310 (464)
T ss_pred CCCCC---ccccCHHHHHhhCCCCEEEEe---C-CHHHHHHHHHHHhh-CCCcEEEEe
Confidence 44333 2233445788887 9999999 5 89999999998886 678998743
No 264
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=85.06 E-value=9.5 Score=44.26 Aligned_cols=102 Identities=20% Similarity=0.196 Sum_probs=67.4
Q ss_pred hHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHH-HHhHHcCCCcEEEEEECCCCc-cccccccc
Q 006816 108 GVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAA-ALAAHWKLNKLTLIYDDNHNT-IDGPTSLV 185 (630)
Q Consensus 108 ~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal-~~a~~~~L~~li~i~~~N~~~-i~~~~~~~ 185 (630)
.++.|.|+|+.. -++++++. ..|.. ..++.+ +.++..++| ++++++..++. .++++..
T Consensus 373 mvg~AaGlA~~G---------------~~P~v~~f--~~Fl~-ra~dQI~~~~a~~~lp-v~~v~~~~G~~g~dG~THq- 432 (641)
T PRK12571 373 AVTFAAGLAAAG---------------LKPFCAVY--STFLQ-RGYDQLLHDVALQNLP-VRFVLDRAGLVGADGATHA- 432 (641)
T ss_pred HHHHHHHHHHCC---------------CEEEEEeh--HHHHH-HHHHHHHHHHhhcCCC-eEEEEECCCcCCCCCcccc-
Confidence 446677777632 24455554 45554 677777 558899998 77777766653 2333332
Q ss_pred ChhcHHHHHHhC-CCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEe
Q 006816 186 LSEDISARFKSL-GWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVK 234 (630)
Q Consensus 186 ~~~~~~~~~~a~-G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~ 234 (630)
..+|+ ..++.. |+.++.. . |..++..+++.|.+..++|++|...
T Consensus 433 ~~~di-a~lr~iPnl~V~~P---s-d~~e~~~~l~~a~~~~~~P~~ir~~ 477 (641)
T PRK12571 433 GAFDL-AFLTNLPNMTVMAP---R-DEAELRHMLRTAAAHDDGPIAVRFP 477 (641)
T ss_pred ccHHH-HHHhcCCCCEEEee---C-CHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 22344 456666 9999999 5 8999999999887623799998654
No 265
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=84.86 E-value=7 Score=42.19 Aligned_cols=107 Identities=12% Similarity=0.110 Sum_probs=70.5
Q ss_pred hhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCcccccccccC
Q 006816 107 QGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGPTSLVL 186 (630)
Q Consensus 107 ~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~~~~~~ 186 (630)
.++.+|+|++++- .++++.+.=+++. ..+|.+.+++-..+|.++++.++-+-+..-++....
T Consensus 59 aA~~~a~GAs~aG----------------~Ra~TaTSg~Gl~--lm~E~~~~a~~~e~P~Viv~~~R~gp~tg~p~~~~q 120 (376)
T PRK08659 59 ASMAAVIGASWAG----------------AKAMTATSGPGFS--LMQENIGYAAMTETPCVIVNVQRGGPSTGQPTKPAQ 120 (376)
T ss_pred HHHHHHHhHHhhC----------------CCeEeecCCCcHH--HHHHHHHHHHHcCCCEEEEEeecCCCCCCCCCCcCc
Confidence 5778888888865 5688888888887 889999999999999888777766533332332212
Q ss_pred hhcHHHHHHh---CCCeEEEEeCCCCCHHHHHHHH----HHHHhcCCCcEEEEEeec
Q 006816 187 SEDISARFKS---LGWNTIMVENIHDNLSSFKEAL----MAAANETKKPTFIRVKKM 236 (630)
Q Consensus 187 ~~~~~~~~~a---~G~~~~~v~dG~~d~~~l~~al----~~a~~~~~~P~~i~~~t~ 236 (630)
.+-...++.+ ++|-++.. . |+++.++.. +-|.+ .+-|+++...++
T Consensus 121 ~D~~~~~~~~hgd~~~ivl~p---~-~~QEa~d~~~~Af~lAE~-~~~PViv~~D~~ 172 (376)
T PRK08659 121 GDMMQARWGTHGDHPIIALSP---S-SVQECFDLTIRAFNLAEK-YRTPVIVLADEV 172 (376)
T ss_pred HHHHHHhcccCCCcCcEEEeC---C-CHHHHHHHHHHHHHHHHH-HCCCEEEEechH
Confidence 2222334443 34766666 5 777765543 33444 467998887664
No 266
>PLN02573 pyruvate decarboxylase
Probab=84.52 E-value=3.1 Score=47.66 Aligned_cols=116 Identities=17% Similarity=0.151 Sum_probs=69.8
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCceEee-ehHHHHHhhHHHHHHhcccCCCeEEEEecCCCC-CCCCCCCCCCh---
Q 006816 366 RNIRYGVREHAMAGISNGVALHGGGLIPFAA-TFLIFSDYMKNSIRLSALSHAGVIYILTHDSIG-LGEDGPTHQPV--- 440 (630)
Q Consensus 366 R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~-~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~-~g~~G~tHq~~--- 440 (630)
|++.+ --|++++.+|-|.|..- | .+++. ++..=+..+..-|.++-..+.||+++....... .+.++..||.+
T Consensus 56 ~~i~~-rhE~~A~~mAdgyaR~t-g-~gv~~~t~GpG~~n~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~ 132 (578)
T PLN02573 56 NLIGC-CNELNAGYAADGYARAR-G-VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLP 132 (578)
T ss_pred eEEEe-CCHHHHHHHHHHHHHHh-C-CCeEEEecCccHHHHHHHHHHHHHhCCCEEEEECCCChhhhhcCceeeeecCCC
Confidence 45444 77999999999999875 4 55554 444433345555655556799999986322222 35555556543
Q ss_pred ---hhhHHhhcCCCcEEEecCChHHH----HHHHHHHHHcCCCcEEEEEcCCC
Q 006816 441 ---EQLAGLRAVPRLLAFRPADGNET----AGSYRVAIANRDVPSVIALSRQK 486 (630)
Q Consensus 441 ---~d~a~l~~iP~l~v~~P~d~~e~----~~~l~~a~~~~~~P~~ir~~r~~ 486 (630)
.+.++++.+--. .....++.++ ..+++.|+.. .+|+||-+|+.-
T Consensus 133 ~~~~~~~~~~~itk~-s~~v~~~~~~~~~l~~A~~~A~~~-~gPV~l~iP~Dv 183 (578)
T PLN02573 133 DFSQELRCFQTVTCY-QAVINNLEDAHELIDTAISTALKE-SKPVYISVSCNL 183 (578)
T ss_pred ChHHHHHHhhceEEE-EEEeCCHHHHHHHHHHHHHHHHhc-CCCEEEEeehhh
Confidence 223556554332 2223344444 4555555665 689999998763
No 267
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=84.49 E-value=5 Score=45.92 Aligned_cols=117 Identities=17% Similarity=0.128 Sum_probs=75.3
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCceEee-ehHHHHHhhHHHHHHhcccCCCeEEEEecCCCC-CCCCC------CCC
Q 006816 366 RNIRYGVREHAMAGISNGVALHGGGLIPFAA-TFLIFSDYMKNSIRLSALSHAGVIYILTHDSIG-LGEDG------PTH 437 (630)
Q Consensus 366 R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~-~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~-~g~~G------~tH 437 (630)
|++.+ --|++++.+|-|+|... |...++. +..+=+..+..-|..+...+.||+++....... .+.++ .++
T Consensus 52 ~~V~~-rhE~~A~~~Adgyar~t-gk~gv~~~t~GPG~~N~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~ 129 (569)
T PRK08327 52 EFVIC-PHEIVAISMAHGYALVT-GKPQAVMVHVDVGTANALGGVHNAARSRIPVLVFAGRSPYTEEGELGSRNTRIHWT 129 (569)
T ss_pred cEEec-CCHHHHHHHHHHHHHhh-CCCeEEEEecCHHHHHHHHHHHHHhhcCCCEEEEeccCCccccccccccccCcccc
Confidence 66666 67999999999999976 2334433 455555556666766777899999986322211 12110 123
Q ss_pred CC-hhhhHHhhcCCCcEEEecCChHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 006816 438 QP-VEQLAGLRAVPRLLAFRPADGNETAGSYRVAIA----NRDVPSVIALSRQ 485 (630)
Q Consensus 438 q~-~~d~a~l~~iP~l~v~~P~d~~e~~~~l~~a~~----~~~~P~~ir~~r~ 485 (630)
|. +...++++.+=. -.+...++.++..+++.|++ .+++|++|-+|..
T Consensus 130 qe~~d~~~~~~~vtk-~~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~i~iP~D 181 (569)
T PRK08327 130 QEMRDQGGLVREYVK-WDYEIRRGDQIGEVVARAIQIAMSEPKGPVYLTLPRE 181 (569)
T ss_pred hhhhhHHHHHhhhhh-hhcccCCHHHHHHHHHHHHHHHhcCCCCCEEEECcHH
Confidence 44 567777876543 33456667777777776654 3478999999854
No 268
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=84.15 E-value=14 Score=34.75 Aligned_cols=92 Identities=12% Similarity=-0.001 Sum_probs=52.2
Q ss_pred eEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCcccccccccChhcHHHHHHhCCCeEEEEeCCCCCHHHHHH
Q 006816 137 RTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGPTSLVLSEDISARFKSLGWNTIMVENIHDNLSSFKE 216 (630)
Q Consensus 137 ~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~~~~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~ 216 (630)
.+++..|=|.++ ..-++..|...++| +++|.-+......+.. .....|..+.++.+--...++.+...-.+.+.+
T Consensus 66 v~~~t~GpG~~n---~~~~l~~A~~~~~P-vl~I~g~~~~~~~~~~-~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~ 140 (164)
T cd07039 66 VCLGSSGPGAIH---LLNGLYDAKRDRAP-VLAIAGQVPTDELGTD-YFQEVDLLALFKDVAVYNETVTSPEQLPELLDR 140 (164)
T ss_pred EEEECCCCcHHH---HHHHHHHHHhcCCC-EEEEecCCcccccCCC-CCcccCHHHHHHHhhcEEEEeCCHHHHHHHHHH
Confidence 344444666664 55689999999999 6666544332211111 111236677788775444555121102334556
Q ss_pred HHHHHHhcCCCcEEEEEe
Q 006816 217 ALMAAANETKKPTFIRVK 234 (630)
Q Consensus 217 al~~a~~~~~~P~~i~~~ 234 (630)
|++.+.. .++|+.|++.
T Consensus 141 A~~~a~~-~~GPV~l~iP 157 (164)
T cd07039 141 AIRTAIA-KRGVAVLILP 157 (164)
T ss_pred HHHHHhc-CCCCEEEEeC
Confidence 6666665 5799999874
No 269
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=83.89 E-value=6.2 Score=45.24 Aligned_cols=115 Identities=17% Similarity=0.054 Sum_probs=72.8
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCceEeee-hHHHHHhhHHHHHHhcccCCCeEEEEecCCCC-CCCCCCCCCChhhh
Q 006816 366 RNIRYGVREHAMAGISNGVALHGGGLIPFAAT-FLIFSDYMKNSIRLSALSHAGVIYILTHDSIG-LGEDGPTHQPVEQL 443 (630)
Q Consensus 366 R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~~-~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~-~g~~G~tHq~~~d~ 443 (630)
|++.+ --|++++.+|-|+|... |...++.+ ..+=+..+..-|.++-..+.||+++....... .+. | .+|.+.+.
T Consensus 43 ~~i~~-rhE~~A~~mAdgyar~t-gk~~v~~v~~GpG~~N~~~gl~~A~~~~~Pvl~I~G~~~~~~~~~-~-~~Qe~d~~ 118 (578)
T PRK06546 43 EWVHV-RHEEAAAFAAAAEAQLT-GKLAVCAGSCGPGNLHLINGLYDAHRSGAPVLAIASHIPSAQIGS-G-FFQETHPD 118 (578)
T ss_pred eEEEe-CcHHHHHHHHHhHHHhh-CCceEEEECCCCcHHHHHHHHHHHHhcCCCEEEEeCCCCccccCC-C-CccccChh
Confidence 46655 68999999999999975 24344332 33323455566666677899999985222111 222 3 36767777
Q ss_pred HHhhcCCCcEEEecCChHHHHHHHHHHHHc---CCCcEEEEEcCC
Q 006816 444 AGLRAVPRLLAFRPADGNETAGSYRVAIAN---RDVPSVIALSRQ 485 (630)
Q Consensus 444 a~l~~iP~l~v~~P~d~~e~~~~l~~a~~~---~~~P~~ir~~r~ 485 (630)
.+++.+=- -.+...++.++..+++.|++. ..+|++|-+|..
T Consensus 119 ~l~~~~tk-~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~lP~D 162 (578)
T PRK06546 119 RLFVECSG-YCEMVSSAEQAPRVLHSAIQHAVAGGGVSVVTLPGD 162 (578)
T ss_pred hhccccee-eEeEeCCHHHHHHHHHHHHHHHhcCCCCEEEEcChh
Confidence 88886633 344556666666666555432 479999999865
No 270
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=83.73 E-value=21 Score=34.52 Aligned_cols=114 Identities=18% Similarity=0.069 Sum_probs=61.7
Q ss_pred CCCCccccccchHHHHHHHHHHHhcCCCCceEeee--hHHHHHhhHHHHHHhcccCC-CeEEEE-ecCCCC-CCCCCCCC
Q 006816 363 PWGRNIRYGVREHAMAGISNGVALHGGGLIPFAAT--FLIFSDYMKNSIRLSALSHA-GVIYIL-THDSIG-LGEDGPTH 437 (630)
Q Consensus 363 ~p~R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~~--~~~F~~~a~dqi~~~a~~~~-pv~~v~-~~~g~~-~g~~G~tH 437 (630)
+|.+|+..|-- ...++.|.|+++.. +-+|++.+ -..|+.- ..-+...+..++ |++++. ...+++ .+. ..+.
T Consensus 40 ~~~~~~~~g~m-G~~lpaAiGaala~-p~~~Vv~i~GDG~f~m~-~~eL~ta~~~~l~~i~ivV~NN~~yg~~~~-~~~~ 115 (188)
T cd03371 40 HAQDFLTVGSM-GHASQIALGIALAR-PDRKVVCIDGDGAALMH-MGGLATIGGLAPANLIHIVLNNGAHDSVGG-QPTV 115 (188)
T ss_pred ccCceeecCcc-ccHHHHHHHHHHhC-CCCcEEEEeCCcHHHhh-ccHHHHHHHcCCCCcEEEEEeCchhhccCC-cCCC
Confidence 46888865211 11345677777654 24555554 4566532 223444455555 554444 444433 111 1111
Q ss_pred -CChhhhHHhhcCCCcEE-EecCChHHHHHHHHHHHHcCCCcEEEEE
Q 006816 438 -QPVEQLAGLRAVPRLLA-FRPADGNETAGSYRVAIANRDVPSVIAL 482 (630)
Q Consensus 438 -q~~~d~a~l~~iP~l~v-~~P~d~~e~~~~l~~a~~~~~~P~~ir~ 482 (630)
+...-..+.+++ |+.- ....+..|+..+++.+++. ++|++|.+
T Consensus 116 ~~~~d~~~~A~a~-G~~~~~~v~~~~el~~al~~a~~~-~~p~lIev 160 (188)
T cd03371 116 SFDVSLPAIAKAC-GYRAVYEVPSLEELVAALAKALAA-DGPAFIEV 160 (188)
T ss_pred CCCCCHHHHHHHc-CCceEEecCCHHHHHHHHHHHHhC-CCCEEEEE
Confidence 112222333333 5553 4567999999999999986 89999864
No 271
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=83.66 E-value=5.3 Score=42.53 Aligned_cols=86 Identities=14% Similarity=0.162 Sum_probs=49.3
Q ss_pred CceEeeehH--HHHHh-hHHHHHHhcccCCCeEEEEecCCCCCCCCCCCC--CChhhhHHh---hcCCCcEEEecCChHH
Q 006816 391 LIPFAATFL--IFSDY-MKNSIRLSALSHAGVIYILTHDSIGLGEDGPTH--QPVEQLAGL---RAVPRLLAFRPADGNE 462 (630)
Q Consensus 391 ~~pv~~~~~--~F~~~-a~dqi~~~a~~~~pv~~v~~~~g~~~g~~G~tH--q~~~d~a~l---~~iP~l~v~~P~d~~e 462 (630)
-+++++++. .|.+- .++.+..++..++||++++-..+++.+ .+++ ....|++-. -.+|+.+| ...++
T Consensus 144 ~~~vv~~~GDGa~~~g~~~EaL~tA~~~~LPvi~Vv~NN~~~~~--~~~~~~~~~~d~~~~a~a~G~~~~~V---dg~d~ 218 (341)
T TIGR03181 144 DNVAVTYFGDGGTSEGDFYEALNFAGVFKAPVVFFVQNNQWAIS--VPRSKQTAAPTLAQKAIAYGIPGVQV---DGNDV 218 (341)
T ss_pred CCEEEEEecCCccccChHHHHHHHHhccCCCEEEEEECCCCccc--cchhhhhCCcCHHHHHhhCCCCEEEE---CCCCH
Confidence 456666554 46542 456677788999999999877765422 1222 122333322 24555554 22222
Q ss_pred ------HHHHHHHHHHcCCCcEEEEE
Q 006816 463 ------TAGSYRVAIANRDVPSVIAL 482 (630)
Q Consensus 463 ------~~~~l~~a~~~~~~P~~ir~ 482 (630)
++.+++.+.+. ++|++|-+
T Consensus 219 ~av~~a~~~A~~~a~~~-~gP~lIev 243 (341)
T TIGR03181 219 LAVYAVTKEAVERARSG-GGPTLIEA 243 (341)
T ss_pred HHHHHHHHHHHHHHHcC-CCCEEEEE
Confidence 25666677665 79999954
No 272
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=83.54 E-value=9.9 Score=44.24 Aligned_cols=83 Identities=19% Similarity=0.188 Sum_probs=58.8
Q ss_pred ccccCchhHHHHHHHhHHcCCCcEEEEEECCCC--cccccccccChhcHHHHHHhC-CCeEEEEeCCCCCHHHHHHHHHH
Q 006816 144 DGCAMEGISHEAAALAAHWKLNKLTLIYDDNHN--TIDGPTSLVLSEDISARFKSL-GWNTIMVENIHDNLSSFKEALMA 220 (630)
Q Consensus 144 DG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~--~i~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~d~~~l~~al~~ 220 (630)
-..|.. ..++++..++..++| +++|.-..++ +.++++. +..++++ .+++. |+.++.. - |..++..+++.
T Consensus 428 f~~F~~-r~~~~ir~~a~~~lp-V~~v~th~g~~~G~dG~TH-q~iedia-~lr~iPn~~v~~P---a-D~~E~~~~~~~ 499 (653)
T TIGR00232 428 FLMFVD-YARPAIRLAALMKLP-VIYVYTHDSIGVGEDGPTH-QPIEQLA-SLRAIPNLSVWRP---C-DGNETAAAWKY 499 (653)
T ss_pred hHHHHH-HHHHHHHHHHhcCCC-EEEEEeCCccCCCCCCccc-CCHHHHH-HHhcCCCCEEEee---C-CHHHHHHHHHH
Confidence 346654 678888999999998 7777754444 4455554 3345553 56666 9999999 4 88899999998
Q ss_pred HHhcCCCcEEEEEe
Q 006816 221 AANETKKPTFIRVK 234 (630)
Q Consensus 221 a~~~~~~P~~i~~~ 234 (630)
+.+..++|++|...
T Consensus 500 a~~~~~gP~~irl~ 513 (653)
T TIGR00232 500 ALESQDGPTALILS 513 (653)
T ss_pred HHhcCCCcEEEEEc
Confidence 87326799988653
No 273
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=83.46 E-value=12 Score=42.95 Aligned_cols=88 Identities=16% Similarity=0.177 Sum_probs=57.8
Q ss_pred eEEEEEcccccCchhHHHHH-HHhHHcCCCcEEEEEECCCCc-ccccccccChhcHHHHHHhC-CCeEEEEeCCCCCHHH
Q 006816 137 RTYCIMSDGCAMEGISHEAA-ALAAHWKLNKLTLIYDDNHNT-IDGPTSLVLSEDISARFKSL-GWNTIMVENIHDNLSS 213 (630)
Q Consensus 137 ~v~~~~GDG~~~eG~~~eal-~~a~~~~L~~li~i~~~N~~~-i~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~d~~~ 213 (630)
+.||.+ =..|.. ..++.+ +.++..++| ++++....++. .++++. +..+|+ ..+++. |+.++.. . |..+
T Consensus 346 ~p~~~~-f~~F~~-ra~dQi~~~~a~~~~p-v~~v~~~~G~~g~dG~tH-~~~edi-a~lr~iP~l~V~~P---s-d~~e 416 (580)
T PRK05444 346 KPVVAI-YSTFLQ-RAYDQVIHDVALQNLP-VTFAIDRAGLVGADGPTH-QGAFDL-SYLRCIPNMVIMAP---S-DENE 416 (580)
T ss_pred eeEEEe-eHHHHH-HHHHHHHHHhhhcCCC-EEEEEeCCCcCCCCCccc-cccHHH-HHHhcCCCCEEEee---C-CHHH
Confidence 444444 556654 667755 447888998 66776655543 223332 223444 456666 9999999 5 9999
Q ss_pred HHHHHHHHHhcCCCcEEEEE
Q 006816 214 FKEALMAAANETKKPTFIRV 233 (630)
Q Consensus 214 l~~al~~a~~~~~~P~~i~~ 233 (630)
+..+++.+.+..++|++|..
T Consensus 417 ~~~~l~~a~~~~~~P~~ir~ 436 (580)
T PRK05444 417 LRQMLYTALAYDDGPIAIRY 436 (580)
T ss_pred HHHHHHHHHhCCCCcEEEEe
Confidence 99999988852379998865
No 274
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=83.24 E-value=12 Score=35.23 Aligned_cols=91 Identities=14% Similarity=0.109 Sum_probs=52.5
Q ss_pred EEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCcccccccccChhcHHHHHHhCCCeEEEEeCCCCC-------
Q 006816 138 TYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGPTSLVLSEDISARFKSLGWNTIMVENIHDN------- 210 (630)
Q Consensus 138 v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~~~~~~~~~~~~~~~a~G~~~~~v~dG~~d------- 210 (630)
+++..|=|..+ ..-++..|...+.| +++|.-+-.....+.. .....|....++.+--...++.+.. +
T Consensus 64 ~~~t~GpG~~n---~~~gl~~A~~~~~P-vl~i~g~~~~~~~~~~-~~q~~d~~~l~~~vtk~~~~v~~~~-~~~~~~~~ 137 (162)
T cd07037 64 VVCTSGTAVAN---LLPAVVEAYYSGVP-LLVLTADRPPELRGTG-ANQTIDQVGLFGDYVRWSVDLPPPE-DDDDLWYL 137 (162)
T ss_pred EEECCchHHHH---HhHHHHHHHhcCCC-EEEEECCCCHHhcCCC-CCcccchhhhccceeeEEEecCCcc-cchhHHHH
Confidence 33434555554 55688899999999 6666544332221111 1112355566666633334443545 5
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEe
Q 006816 211 LSSFKEALMAAANETKKPTFIRVK 234 (630)
Q Consensus 211 ~~~l~~al~~a~~~~~~P~~i~~~ 234 (630)
+..+.+|++.|.....||++|++.
T Consensus 138 ~~~i~~A~~~A~~~~~GPv~l~iP 161 (162)
T cd07037 138 LRLANRAVLEALSAPPGPVHLNLP 161 (162)
T ss_pred HHHHHHHHHHHhCCCCCCEEEecc
Confidence 566778888887534589999863
No 275
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=82.93 E-value=4.3 Score=46.61 Aligned_cols=115 Identities=15% Similarity=0.148 Sum_probs=73.0
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCceEee-ehHHHHHhhHHHHHHhcccCCCeEEEEecCCCC-CCCCCCCCCChhhh
Q 006816 366 RNIRYGVREHAMAGISNGVALHGGGLIPFAA-TFLIFSDYMKNSIRLSALSHAGVIYILTHDSIG-LGEDGPTHQPVEQL 443 (630)
Q Consensus 366 R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~-~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~-~g~~G~tHq~~~d~ 443 (630)
|++.+ .-|++++.+|.|.|..- |...++. +..+=+..+..-|.++-..+.||+++....... .+. ..+|.++..
T Consensus 53 ~~i~~-rhE~~A~~~Adgyar~t-g~~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~--~~~q~~d~~ 128 (585)
T CHL00099 53 KHILV-RHEQGAAHAADGYARST-GKVGVCFATSGPGATNLVTGIATAQMDSVPLLVITGQVGRAFIGT--DAFQEVDIF 128 (585)
T ss_pred eEEEe-cCHHHHHHHHHHHHHhc-CCcEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEecCCCccccCC--CCccccchh
Confidence 56664 79999999999999864 2444433 355444456666777777899999985222111 232 235666666
Q ss_pred HHhhcCCCcEEEecCChHHHHHHHHHHHHc----CCCcEEEEEcCC
Q 006816 444 AGLRAVPRLLAFRPADGNETAGSYRVAIAN----RDVPSVIALSRQ 485 (630)
Q Consensus 444 a~l~~iP~l~v~~P~d~~e~~~~l~~a~~~----~~~P~~ir~~r~ 485 (630)
++++.+=- -.....++.++..+++.|++. +.+|++|-+|+.
T Consensus 129 ~~~~~~tk-~~~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~D 173 (585)
T CHL00099 129 GITLPIVK-HSYVVRDARDISRIVAEAFYIAKHGRPGPVLIDIPKD 173 (585)
T ss_pred hhhcCcee-EEEEeCCHHHHHHHHHHHHHHHccCCCCeEEEecChh
Confidence 66665532 233445667777777766542 468999999975
No 276
>PRK12474 hypothetical protein; Provisional
Probab=82.73 E-value=9.3 Score=43.15 Aligned_cols=116 Identities=11% Similarity=0.067 Sum_probs=75.4
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCceEee-ehHHHHHhhHHHHHHhcccCCCeEEEEecCCCC-CCCCCCCCCChhhh
Q 006816 366 RNIRYGVREHAMAGISNGVALHGGGLIPFAA-TFLIFSDYMKNSIRLSALSHAGVIYILTHDSIG-LGEDGPTHQPVEQL 443 (630)
Q Consensus 366 R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~-~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~-~g~~G~tHq~~~d~ 443 (630)
|++.+ --|++++.+|-|.|..- |..-++. ++..=+..+..-|.++-..+.||+++....... .+. ..||.....
T Consensus 45 ~~i~~-rhE~~A~~mAdgYaR~t-g~~gv~~~t~GpG~~N~~~gl~~A~~d~~Pvl~i~G~~~~~~~~~--~~~q~~d~~ 120 (518)
T PRK12474 45 RPVLC-LFEGVVTGAADGYGRIA-GKPAVTLLHLGPGLANGLANLHNARRAASPIVNIVGDHAVEHLQY--DAPLTSDID 120 (518)
T ss_pred eEEEe-cchHHHHHHHHHHHHHh-CCCEEEEEccchhHhHhHHHHHHHhhcCCCEEEEeccCchhhcCC--CCccccCHH
Confidence 66666 78999999999999864 2444433 444433445555556666799999885221111 221 235556677
Q ss_pred HHhhcCCCcEEEecCChHHHHHHHHHHHH----cCCCcEEEEEcCCC
Q 006816 444 AGLRAVPRLLAFRPADGNETAGSYRVAIA----NRDVPSVIALSRQK 486 (630)
Q Consensus 444 a~l~~iP~l~v~~P~d~~e~~~~l~~a~~----~~~~P~~ir~~r~~ 486 (630)
++++.+-- ..+...++.++..+++.|++ .+.+|++|-+|+.-
T Consensus 121 ~~~~~vtk-~~~~v~~~~~~~~~i~rA~~~A~~~~~GPV~l~iP~Dv 166 (518)
T PRK12474 121 GFARPVSR-WVHRSASAGAVDSDVARAVQAAQSAPGGIATLIMPADV 166 (518)
T ss_pred Hhhhcccc-eeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEechhh
Confidence 78886543 23456788888888877774 24689999999763
No 277
>PRK05899 transketolase; Reviewed
Probab=82.54 E-value=13 Score=43.15 Aligned_cols=81 Identities=19% Similarity=0.249 Sum_probs=59.6
Q ss_pred cccCchhHHHHHHHhHHcCCCcEEEEEECCCCcc--cccccccChhcHHHHHHhC-CCeEEEEeCCCCCHHHHHHHHHHH
Q 006816 145 GCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTI--DGPTSLVLSEDISARFKSL-GWNTIMVENIHDNLSSFKEALMAA 221 (630)
Q Consensus 145 G~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i--~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~d~~~l~~al~~a 221 (630)
..|. ...++++.+.+..++| ++++....+++. ++++. +..+|++ .++++ |+.++.. . |..++..+++.+
T Consensus 400 ~~F~-~r~~~qir~~~~~~~p-v~~v~~~~G~~~g~~G~tH-q~~edia-~~r~iP~~~V~~P---~-d~~e~~~~l~~a 471 (624)
T PRK05899 400 LVFS-DYARNAIRLAALMKLP-VIYVFTHDSIGVGEDGPTH-QPVEQLA-SLRAIPNLTVIRP---A-DANETAAAWKYA 471 (624)
T ss_pred HHHH-HHHHHHHHHHHhcCCC-EEEEEECCCcCcCCCCCCc-ccHHHHH-HHHhCCCcEEEeC---C-CHHHHHHHHHHH
Confidence 4555 5788999998888987 777777777644 55555 3344544 45555 9999998 5 999999999998
Q ss_pred HhcCCCcEEEEE
Q 006816 222 ANETKKPTFIRV 233 (630)
Q Consensus 222 ~~~~~~P~~i~~ 233 (630)
.+..++|++|..
T Consensus 472 ~~~~~~P~~ir~ 483 (624)
T PRK05899 472 LERKDGPSALVL 483 (624)
T ss_pred HHcCCCCEEEEE
Confidence 862279999876
No 278
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=82.21 E-value=6.2 Score=45.41 Aligned_cols=117 Identities=16% Similarity=0.081 Sum_probs=73.2
Q ss_pred CCccccccchHHHHHHHHHHHhcCCCCceEee-ehHHHHHhhHHHHHHhcccCCCeEEEEecCCCC-CCCCCCCCCChhh
Q 006816 365 GRNIRYGVREHAMAGISNGVALHGGGLIPFAA-TFLIFSDYMKNSIRLSALSHAGVIYILTHDSIG-LGEDGPTHQPVEQ 442 (630)
Q Consensus 365 ~R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~-~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~-~g~~G~tHq~~~d 442 (630)
=|++.+ -.|++++.+|-|+|... |...++. ++.+=+..+..-|.++-..+.||+++....... .+. .++|.++.
T Consensus 43 i~~i~~-rhE~~A~~~Adgyar~t-g~~gv~~~t~GPG~~n~~~gi~~A~~d~vPvl~I~G~~~~~~~~~--~~~q~~d~ 118 (597)
T PRK08273 43 PEFVQA-RHEEMAAFMAVAHAKFT-GEVGVCLATSGPGAIHLLNGLYDAKLDHVPVVAIVGQQARAALGG--HYQQEVDL 118 (597)
T ss_pred CeEEEe-ccHHHHHHHHHHHHHHh-CCCEEEEECCCccHHHHHHHHHHHHhcCCCEEEEecCCchhhcCC--CCCCccCH
Confidence 356655 78999999999999864 2444443 455544556666777777899999885222222 232 24666666
Q ss_pred hHHhhcCCCcEEEecCChHHHHHH----HHHHHHcCCCcEEEEEcCCC
Q 006816 443 LAGLRAVPRLLAFRPADGNETAGS----YRVAIANRDVPSVIALSRQK 486 (630)
Q Consensus 443 ~a~l~~iP~l~v~~P~d~~e~~~~----l~~a~~~~~~P~~ir~~r~~ 486 (630)
.++++.+=---.....++.++... ++.|+.. .+|++|-+|..-
T Consensus 119 ~~l~~~vt~k~~~~v~~~~~~~~~l~~A~~~A~~~-~gPV~i~iP~Dv 165 (597)
T PRK08273 119 QSLFKDVAGAFVQMVTVPEQLRHLVDRAVRTALAE-RTVTAVILPNDV 165 (597)
T ss_pred HHHHHHHHHHHeeEeCCHHHHHHHHHHHHHHHhhC-CCCEEEEeCcch
Confidence 677776541123344455555554 4455554 689999999753
No 279
>PTZ00089 transketolase; Provisional
Probab=82.07 E-value=11 Score=43.96 Aligned_cols=102 Identities=19% Similarity=0.054 Sum_probs=69.3
Q ss_pred hHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCC--Cccccccccc
Q 006816 108 GVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNH--NTIDGPTSLV 185 (630)
Q Consensus 108 ~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~--~~i~~~~~~~ 185 (630)
.+++|.|+|+.. .-+++++.. ..|.. ..++.+..++..+|| +++|+...+ ++.++++..
T Consensus 415 mv~~AaGlA~~~--------------G~~P~~~tf--~~Fl~-Ra~dqir~~al~~lp-V~~v~thdg~~~g~DG~THq- 475 (661)
T PTZ00089 415 MCAIMNGIAAHG--------------GFIPFGATF--LNFYG-YALGAVRLAALSHHP-VIYVATHDSIGLGEDGPTHQ- 475 (661)
T ss_pred HHHHHHHHHHcC--------------CCeEEEEeh--HHHHH-HHHHHHHHHHhcCCC-eEEEEeCCceecCCCCCCcc-
Confidence 446677777622 123455554 47765 788999999999999 666664444 445555542
Q ss_pred ChhcHHHHHHhC-CCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEE
Q 006816 186 LSEDISARFKSL-GWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRV 233 (630)
Q Consensus 186 ~~~~~~~~~~a~-G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~ 233 (630)
..+|+ ..+++. |+.++.. - |..++..+++.+....++|+.|..
T Consensus 476 ~iedi-a~lR~iPn~~V~~P---a-D~~E~~~~l~~al~~~~gP~~irl 519 (661)
T PTZ00089 476 PVETL-ALLRATPNLLVIRP---A-DGTETSGAYALALANAKTPTILCL 519 (661)
T ss_pred cHHHH-HHHhcCCCcEEEec---C-CHHHHHHHHHHHHHcCCCCEEEEe
Confidence 23444 356666 8999998 4 899999999988743579999875
No 280
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=81.99 E-value=9.8 Score=43.62 Aligned_cols=112 Identities=16% Similarity=0.155 Sum_probs=68.0
Q ss_pred ccccccchHHHHHHHHHHHhc----CCCCceEeee--hHHHHH-hhHHHHHHhcccCCCeEEEEecCCCCCC-CCCCCCC
Q 006816 367 NIRYGVREHAMAGISNGVALH----GGGLIPFAAT--FLIFSD-YMKNSIRLSALSHAGVIYILTHDSIGLG-EDGPTHQ 438 (630)
Q Consensus 367 ~~~~gIaE~~~vg~a~GlA~~----G~~~~pv~~~--~~~F~~-~a~dqi~~~a~~~~pv~~v~~~~g~~~g-~~G~tHq 438 (630)
++.+|+.= +.+++|.|+|+. |. -..+++. -..|.. .+++.+.+++.++.|++++....+++.+ .-|.+..
T Consensus 109 ~~~~g~~~-~~ls~A~G~A~A~k~~~~-~~~vv~~iGDG~~~eG~~~EAln~A~~~k~~li~Ii~dN~~si~~~~~~~~~ 186 (581)
T PRK12315 109 FFTVGHTS-TSIALATGLAKARDLKGE-KGNIIAVIGDGSLSGGLALEGLNNAAELKSNLIIIVNDNQMSIAENHGGLYK 186 (581)
T ss_pred CcCCCcHH-HHHHHHHHHHHHHHhcCC-CCeEEEEECchhhhcchHHHHHHHHHhhCCCEEEEEECCCCcCCCCCchhhh
Confidence 45667643 466778888764 31 1233333 456666 7899999998888999999866665532 1111111
Q ss_pred Chh--------h-hHHhhcCCCcEEEecCChHHHHHHH---HHHHHcCCCcEEEEE
Q 006816 439 PVE--------Q-LAGLRAVPRLLAFRPADGNETAGSY---RVAIANRDVPSVIAL 482 (630)
Q Consensus 439 ~~~--------d-~a~l~~iP~l~v~~P~d~~e~~~~l---~~a~~~~~~P~~ir~ 482 (630)
.+. + ...+.++ |+..+.|.|.+|+..+. +.+... ++|++|..
T Consensus 187 ~l~~~~~~~~~~~~~~~~a~-G~~~~~v~DG~D~~~l~~a~~~a~~~-~gP~~i~~ 240 (581)
T PRK12315 187 NLKELRDTNGQSENNLFKAM-GLDYRYVEDGNDIESLIEAFKEVKDI-DHPIVLHI 240 (581)
T ss_pred hhhhhhhcccccHHHHHHhc-CCeEEEeeCCCCHHHHHHHHHHHHhC-CCCEEEEE
Confidence 111 1 1355666 77777776666655544 444443 78999964
No 281
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=81.98 E-value=17 Score=42.43 Aligned_cols=102 Identities=19% Similarity=0.161 Sum_probs=65.5
Q ss_pred hhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHH-HHHhHHcCCCcEEEEEECCCCcc-cccccc
Q 006816 107 QGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEA-AALAAHWKLNKLTLIYDDNHNTI-DGPTSL 184 (630)
Q Consensus 107 ~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~ea-l~~a~~~~L~~li~i~~~N~~~i-~~~~~~ 184 (630)
+.++.|.|+|+.. -++++++. ..|.. ..++- ++.++..++| ++++++..++.. ++++..
T Consensus 409 ~~vg~AaGLA~~G---------------~kPvv~~f--s~Fl~-RA~DQI~~dval~~lp-Vv~v~~~aG~vg~dG~TH~ 469 (677)
T PLN02582 409 HAVTFAAGLACEG---------------LKPFCAIY--SSFLQ-RGYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHC 469 (677)
T ss_pred HHHHHHHHHHHCC---------------CeEEEEec--HHHHH-HHHHHHHHHHHhcCCC-EEEEEECCCcccCCCCccc
Confidence 3456677777732 34566654 45543 55654 4667889998 777777665532 333332
Q ss_pred cChhcHHHHHHhC-CCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEE
Q 006816 185 VLSEDISARFKSL-GWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRV 233 (630)
Q Consensus 185 ~~~~~~~~~~~a~-G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~ 233 (630)
...|+ .+++.. |+.++.. . |..++..+++.+.+..++|++|..
T Consensus 470 -~~~Di-a~lr~iPnl~V~~P---s-d~~E~~~~l~~al~~~~gPv~IR~ 513 (677)
T PLN02582 470 -GAFDV-TYMACLPNMVVMAP---S-DEAELFHMVATAAAIDDRPSCFRY 513 (677)
T ss_pred -ccHHH-HHHhcCCCCEEEee---C-CHHHHHHHHHHHHhCCCCCEEEEE
Confidence 23344 345555 9999999 5 899999999888752459998854
No 282
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=81.45 E-value=4.5 Score=52.19 Aligned_cols=115 Identities=15% Similarity=0.075 Sum_probs=80.4
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCceEee--ehHHHHHhhHHHHHHhcccCCCeEEEEecCCCCCCCCCCCCCChhhh
Q 006816 366 RNIRYGVREHAMAGISNGVALHGGGLIPFAA--TFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQL 443 (630)
Q Consensus 366 R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~--~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~~g~~G~tHq~~~d~ 443 (630)
|++.+ .-|++++-+|-|+|..- -+|.++ |..+=+..++..|-.+...+.||+++. .+.-....+-..+|.+.+.
T Consensus 341 ~~i~~-rhErsAafmAdGyAR~T--gkpgV~i~TsGPG~tN~l~av~eA~~d~vPlLvIt-gd~p~~~~~~ga~Q~iDq~ 416 (1655)
T PLN02980 341 TCIAC-FDERSLAFHALGYARGS--LKPAVVITSSGTAVSNLLPAVVEASQDFVPLLLLT-ADRPPELQDAGANQAINQV 416 (1655)
T ss_pred eEEec-cCcchHHHHHHHHHHHh--CCCEEEEEeCcHHHHHHHHHHHHHhhcCCCEEEEe-CCCCHHHhcCCCCcccchh
Confidence 55544 89999999999999976 455553 566666677777877788899999985 4433211112247888999
Q ss_pred HHhhcCCCcEEEe--cCCh-------HHHHHHHHHHHHcCCCcEEEEEcC
Q 006816 444 AGLRAVPRLLAFR--PADG-------NETAGSYRVAIANRDVPSVIALSR 484 (630)
Q Consensus 444 a~l~~iP~l~v~~--P~d~-------~e~~~~l~~a~~~~~~P~~ir~~r 484 (630)
++++.+--..+-. |.+. ..+..+++.|...+.|||+|-+|.
T Consensus 417 ~lf~pvtK~s~~v~~p~~~~~~~~l~~~v~~A~~~A~s~rpGPVhL~iP~ 466 (1655)
T PLN02980 417 NHFGSFVRFFFNLPPPTDLIPARMVLTTLDSAVHWATSSPCGPVHINCPF 466 (1655)
T ss_pred hHHHhhhheeecCCCccchhhHHHHHHHHHHHHHHHhCCCCCCEEEECcc
Confidence 9999887765554 4442 345556666666557999999984
No 283
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=81.20 E-value=45 Score=31.47 Aligned_cols=115 Identities=18% Similarity=0.093 Sum_probs=65.6
Q ss_pred CCCCCccccccchHHH---HHHHHHHHhcCCCCceEeee--hHHHHHhhHHHHHHhcccCCCeEEEEecCC-CCCC----
Q 006816 362 SPWGRNIRYGVREHAM---AGISNGVALHGGGLIPFAAT--FLIFSDYMKNSIRLSALSHAGVIYILTHDS-IGLG---- 431 (630)
Q Consensus 362 ~~p~R~~~~gIaE~~~---vg~a~GlA~~G~~~~pv~~~--~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g-~~~g---- 431 (630)
..|.||+..+- ..| +..|.|.++.- .-++++.+ -..|..- ...+..+...++|++++....+ ++.-
T Consensus 38 ~~~~~~~~~~~--g~mG~~lp~aiGaala~-~~~~vv~i~GDG~f~~~-~~el~ta~~~~~p~~~iV~nN~~~~~~~~~~ 113 (178)
T cd02002 38 TRPGSYFTLRG--GGLGWGLPAAVGAALAN-PDRKVVAIIGDGSFMYT-IQALWTAARYGLPVTVVILNNRGYGALRSFL 113 (178)
T ss_pred CCCCCeeccCC--ccccchHHHHHHHHhcC-CCCeEEEEEcCchhhcc-HHHHHHHHHhCCCeEEEEEcCccHHHHHHHH
Confidence 35788886543 222 34566666653 13455544 5666532 2345555566899888875554 3310
Q ss_pred ----CC--------CC-CCCChhhhH-HhhcCCCcEEEecCChHHHHHHHHHHHHcCCCcEEEEE
Q 006816 432 ----ED--------GP-THQPVEQLA-GLRAVPRLLAFRPADGNETAGSYRVAIANRDVPSVIAL 482 (630)
Q Consensus 432 ----~~--------G~-tHq~~~d~a-~l~~iP~l~v~~P~d~~e~~~~l~~a~~~~~~P~~ir~ 482 (630)
.+ +. ......|.+ +.+++ |+..+.-.+..|++..++.+++. ++|++|-.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~-~~p~vi~v 176 (178)
T cd02002 114 KRVGPEGPGENAPDGLDLLDPGIDFAAIAKAF-GVEAERVETPEELDEALREALAE-GGPALIEV 176 (178)
T ss_pred HHHcCCCcccccccccccCCCCCCHHHHHHHc-CCceEEeCCHHHHHHHHHHHHhC-CCCEEEEE
Confidence 00 00 001112222 33333 66666778899999999999986 89998853
No 284
>PRK06163 hypothetical protein; Provisional
Probab=81.04 E-value=22 Score=34.84 Aligned_cols=115 Identities=20% Similarity=0.104 Sum_probs=63.5
Q ss_pred CCCCccccccchHHHHHHHHHHHhcCCCCceEeee--hHHHHHhhHHHHHHh-cccCCCeEEEEecC-CCCCCCCCCCC-
Q 006816 363 PWGRNIRYGVREHAMAGISNGVALHGGGLIPFAAT--FLIFSDYMKNSIRLS-ALSHAGVIYILTHD-SIGLGEDGPTH- 437 (630)
Q Consensus 363 ~p~R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~~--~~~F~~~a~dqi~~~-a~~~~pv~~v~~~~-g~~~g~~G~tH- 437 (630)
.|.+|+..| +=...+..|.|.++.. +-++++++ -..|+..+ ..|..+ .+.++|++++.-.. +++. ..+..+
T Consensus 49 ~~~~~~~~G-sMG~glpaAiGaalA~-p~r~Vv~i~GDG~f~m~~-~eL~Ta~~~~~lpi~ivV~NN~~yg~-~~~~~~~ 124 (202)
T PRK06163 49 RPQNFYMLG-SMGLAFPIALGVALAQ-PKRRVIALEGDGSLLMQL-GALGTIAALAPKNLTIIVMDNGVYQI-TGGQPTL 124 (202)
T ss_pred CCCCeEeec-ccccHHHHHHHHHHhC-CCCeEEEEEcchHHHHHH-HHHHHHHHhcCCCeEEEEEcCCchhh-cCCccCC
Confidence 356666322 1122233667777664 35666665 45555433 223333 35567877766444 4442 111111
Q ss_pred --CChhhhHHhhcCCCcE-EEecCChHHHHHHHHHHHHcCCCcEEEEEc
Q 006816 438 --QPVEQLAGLRAVPRLL-AFRPADGNETAGSYRVAIANRDVPSVIALS 483 (630)
Q Consensus 438 --q~~~d~a~l~~iP~l~-v~~P~d~~e~~~~l~~a~~~~~~P~~ir~~ 483 (630)
+..+-.++.+++ |+. -+.-.+..|+..+|+.+++. ++|++|-+.
T Consensus 125 ~~~~~Df~~lA~a~-G~~~~~~v~~~~el~~al~~a~~~-~~p~lIeV~ 171 (202)
T PRK06163 125 TSQTVDVVAIARGA-GLENSHWAADEAHFEALVDQALSG-PGPSFIAVR 171 (202)
T ss_pred CCCCCCHHHHHHHC-CCceEEEeCCHHHHHHHHHHHHhC-CCCEEEEEE
Confidence 112222334444 665 56678999999999999986 999998653
No 285
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=79.67 E-value=17 Score=41.93 Aligned_cols=88 Identities=17% Similarity=0.151 Sum_probs=55.0
Q ss_pred ceEEEEEcccccCchhHHHHH-HHhHHcCCCcEEEEEECCCCc-ccccccccChhcHHHHHHhC-CCeEEEEeCCCCCHH
Q 006816 136 HRTYCIMSDGCAMEGISHEAA-ALAAHWKLNKLTLIYDDNHNT-IDGPTSLVLSEDISARFKSL-GWNTIMVENIHDNLS 212 (630)
Q Consensus 136 ~~v~~~~GDG~~~eG~~~eal-~~a~~~~L~~li~i~~~N~~~-i~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~d~~ 212 (630)
++++++. +.|.. ..++-+ +.++..++| ++++++..++. .++++.. ...|+ ..++.+ |+.++.. . |..
T Consensus 424 rPvv~~f--s~Fl~-RA~DQI~~dva~~~lp-V~~v~~~aG~~g~dG~TH~-~~~Di-a~lr~iPnl~V~~P---s-d~~ 493 (641)
T PLN02234 424 KPFCTIY--SSFMQ-RAYDQVVHDVDLQKLP-VRFAIDRAGLMGADGPTHC-GAFDV-TFMACLPNMIVMAP---S-DEA 493 (641)
T ss_pred eEEEEeh--HHHHH-HHHHHHHHHHhhcCCC-EEEEEeCCccCCCCCcccc-ccHHH-HHHhcCCCCEEEee---C-CHH
Confidence 4455543 44443 445444 456788998 77777777653 2333322 22343 345555 9999999 5 899
Q ss_pred HHHHHHHHHHhcCCCcEEEEE
Q 006816 213 SFKEALMAAANETKKPTFIRV 233 (630)
Q Consensus 213 ~l~~al~~a~~~~~~P~~i~~ 233 (630)
++..+++.+....++|++|..
T Consensus 494 E~~~~l~~a~~~~~~Pv~ir~ 514 (641)
T PLN02234 494 ELFNMVATAAAIDDRPSCFRY 514 (641)
T ss_pred HHHHHHHHHHhCCCCCEEEEe
Confidence 999999886542468998843
No 286
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=79.45 E-value=14 Score=42.93 Aligned_cols=102 Identities=18% Similarity=0.166 Sum_probs=66.8
Q ss_pred hhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHH-hHHcCCCcEEEEEECCCCcc-cccccc
Q 006816 107 QGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAAL-AAHWKLNKLTLIYDDNHNTI-DGPTSL 184 (630)
Q Consensus 107 ~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~-a~~~~L~~li~i~~~N~~~i-~~~~~~ 184 (630)
+.+..|.|+|+.- -++++++.. .|.. -.++-+.. ++.+++| +.++++.-++.- ++++.
T Consensus 434 haVt~AAGLA~~G---------------~kPvv~iys--tFlq-RAyDQI~~Dval~~lp-V~~vid~aGlvg~DG~TH- 493 (701)
T PLN02225 434 HAVTFSAGLSSGG---------------LKPFCIIPS--AFLQ-RAYDQVVHDVDRQRKA-VRFVITSAGLVGSDGPVQ- 493 (701)
T ss_pred HHHHHHHHHHHCC---------------CEEEEEeeh--hHHH-HHHHHHHHHHHhhcCC-ceEEEECCccCCCCCccc-
Confidence 3556677777632 356777774 5654 55555544 6788888 777777766532 23332
Q ss_pred cChhcHHHHHHhC-CCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEE
Q 006816 185 VLSEDISARFKSL-GWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRV 233 (630)
Q Consensus 185 ~~~~~~~~~~~a~-G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~ 233 (630)
....|+ .+++.. |+.++.. . |..++..+++.|....++|++|..
T Consensus 494 ~g~~Di-a~lr~IPnm~V~aP---s-D~~El~~mL~~A~~~~~gPv~IR~ 538 (701)
T PLN02225 494 CGAFDI-AFMSSLPNMIAMAP---A-DEDELVNMVATAAYVTDRPVCFRF 538 (701)
T ss_pred cccHHH-HHHhcCCCCEEEee---C-CHHHHHHHHHHHHhcCCCCEEEEe
Confidence 223455 566666 9999999 5 999999999876632568999865
No 287
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=79.20 E-value=16 Score=38.63 Aligned_cols=39 Identities=18% Similarity=0.291 Sum_probs=32.3
Q ss_pred cHHHHHHhC-CCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEE
Q 006816 189 DISARFKSL-GWNTIMVENIHDNLSSFKEALMAAANETKKPTFIR 232 (630)
Q Consensus 189 ~~~~~~~a~-G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~ 232 (630)
.+..+++.. |+.++.. . |..++...++.+.+ .++|++|.
T Consensus 132 ~~ea~~~~iPgl~V~~P---s-d~~d~~~~l~~a~~-~~~Pv~ir 171 (327)
T CHL00144 132 RLESYFQSVPGLQIVAC---S-TPYNAKGLLKSAIR-SNNPVIFF 171 (327)
T ss_pred cHHHHHhcCCCCEEEEe---C-CHHHHHHHHHHHHh-CCCcEEEE
Confidence 445788877 9999998 4 89999999988886 68999886
No 288
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=79.10 E-value=25 Score=37.62 Aligned_cols=61 Identities=15% Similarity=0.133 Sum_probs=41.7
Q ss_pred CCCcEEEEEECCCCcccccccccChhcHHHHHHhC-CCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEE
Q 006816 163 KLNKLTLIYDDNHNTIDGPTSLVLSEDISARFKSL-GWNTIMVENIHDNLSSFKEALMAAANETKKPTFIR 232 (630)
Q Consensus 163 ~L~~li~i~~~N~~~i~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~ 232 (630)
++| ++++.....++.++++... .+...++++ |+.++.. . |..++..+++.+.+ .++|++|.
T Consensus 141 ~v~-vv~~~~~g~~g~~G~tHs~---~~ea~lr~iPn~~V~~P---s-d~~e~~~~l~~a~~-~~~P~~i~ 202 (355)
T PTZ00182 141 DCP-IVIRGPNGAVGHGGAYHSQ---SFEAYFAHVPGLKVVAP---S-DPEDAKGLLKAAIR-DPNPVVFF 202 (355)
T ss_pred cCC-EEEEeCCCCCCCCCCcccc---hHHHHHhcCCCCEEEee---C-CHHHHHHHHHHHHh-CCCcEEEE
Confidence 444 4444433344555555422 233778877 9999999 4 89999999999887 68999875
No 289
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=78.70 E-value=14 Score=35.97 Aligned_cols=119 Identities=18% Similarity=0.112 Sum_probs=68.4
Q ss_pred CCCCCcccccc-c-hHHHHHHHHHHHhcCCCCceEeee--hHHHHHhhHHHHHHhcccCCCeEEEEecCC-CCCCC----
Q 006816 362 SPWGRNIRYGV-R-EHAMAGISNGVALHGGGLIPFAAT--FLIFSDYMKNSIRLSALSHAGVIYILTHDS-IGLGE---- 432 (630)
Q Consensus 362 ~~p~R~~~~gI-a-E~~~vg~a~GlA~~G~~~~pv~~~--~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g-~~~g~---- 432 (630)
..|.+|++.+- . =...++.|.|.++.. +-+|++++ -..|...+ ..|..+...++|+++++-..+ ++.-.
T Consensus 45 ~~~~~~~~~~~~GsmG~~lpaaiGa~la~-p~~~vv~i~GDG~f~m~~-~eL~Ta~~~~lpviivV~NN~~yg~~~~~q~ 122 (202)
T cd02006 45 YKPRHWINCGQAGPLGWTVPAALGVAAAD-PDRQVVALSGDYDFQFMI-EELAVGAQHRIPYIHVLVNNAYLGLIRQAQR 122 (202)
T ss_pred CCCCeEEccCCccchhhhhHHHHhHHhhC-CCCeEEEEEeChHhhccH-HHHHHHHHhCCCeEEEEEeCchHHHHHHHHH
Confidence 45788887642 1 111344677766654 25677665 45665433 334445667899887764444 33100
Q ss_pred ---CC----CCCC----------ChhhhHHhhcCCCcEEEecCChHHHHHHHHHHHH---cCCCcEEEEEc
Q 006816 433 ---DG----PTHQ----------PVEQLAGLRAVPRLLAFRPADGNETAGSYRVAIA---NRDVPSVIALS 483 (630)
Q Consensus 433 ---~G----~tHq----------~~~d~a~l~~iP~l~v~~P~d~~e~~~~l~~a~~---~~~~P~~ir~~ 483 (630)
++ ..+. ..+-..+.+++ |+.-+.-.++.|+..+|+.+++ ..++|++|-+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~~~~~p~liev~ 192 (202)
T cd02006 123 AFDMDYQVNLAFENINSSELGGYGVDHVKVAEGL-GCKAIRVTKPEELAAAFEQAKKLMAEHRVPVVVEAI 192 (202)
T ss_pred HhcCccccccccccccccccCCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHHhcccCCCcEEEEEE
Confidence 00 0011 11112233333 6778888999999999999995 23889988653
No 290
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=77.74 E-value=20 Score=33.63 Aligned_cols=86 Identities=10% Similarity=0.058 Sum_probs=48.2
Q ss_pred cccccCchhHHHHHHHhHHcCCCcEEEEEECCCCcc-cccc--cc----cChhcHHHHHHhCCCeEEEEeCCCCCHHHHH
Q 006816 143 SDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTI-DGPT--SL----VLSEDISARFKSLGWNTIMVENIHDNLSSFK 215 (630)
Q Consensus 143 GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i-~~~~--~~----~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~ 215 (630)
|=|.. -..-++..|...+.| +++|.-+..... .+.. .. ....|....++.+--...++.+...-++.+.
T Consensus 68 GpG~~---n~~~gl~~A~~~~~P-vl~i~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~tk~~~~v~~~~~i~~~v~ 143 (162)
T cd07038 68 GVGEL---SALNGIAGAYAEHVP-VVHIVGAPSTKAQASGLLLHHTLGDGDFDVFLKMFEEITCAAARLTDPENAAEEID 143 (162)
T ss_pred CccHH---HHHHHHHHHHHcCCC-EEEEecCCCccccccccceeecccccchHHHHHHHHhheeEEEEeCCHHHHHHHHH
Confidence 55544 356688899999999 666654433221 1101 00 1122566778877544555622220123456
Q ss_pred HHHHHHHhcCCCcEEEEE
Q 006816 216 EALMAAANETKKPTFIRV 233 (630)
Q Consensus 216 ~al~~a~~~~~~P~~i~~ 233 (630)
+|++.|.. .++|+.|++
T Consensus 144 ~A~~~a~s-~~gPV~l~i 160 (162)
T cd07038 144 RVLRTALR-ESRPVYIEI 160 (162)
T ss_pred HHHHHHHH-CCCCEEEEc
Confidence 66766776 568999986
No 291
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=77.65 E-value=8.5 Score=38.52 Aligned_cols=107 Identities=14% Similarity=0.125 Sum_probs=63.5
Q ss_pred hhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCcccccccccC
Q 006816 107 QGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGPTSLVL 186 (630)
Q Consensus 107 ~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~~~~~~ 186 (630)
.++.+++|++++- .++++.+.=.++. ...|.|.+++-.++|.++++++.-+-+-..++.. .
T Consensus 47 ~A~~~~~GAs~aG----------------~ra~t~ts~~Gl~--lm~e~l~~a~~~~~P~V~~~~~R~g~~~g~~~~~-~ 107 (230)
T PF01855_consen 47 AAMEAAIGASAAG----------------ARAMTATSGPGLN--LMAEPLYWAAGTELPIVIVVVQRAGPSPGLSTQP-E 107 (230)
T ss_dssp HHHHHHHHHHHTT------------------EEEEEECCHHH--HHCCCHHHHHHTT--EEEEEEEB---SSSB--SB--
T ss_pred HHHHHHHHHHhcC----------------CceEEeecCCccc--ccHhHHHHHHHcCCCEEEEEEECCCCCCCCcCcC-C
Confidence 4667778887754 5688888888887 8899999999999997777776544222112211 1
Q ss_pred hhcHHHHHHhCCCeEEEEeCCCCCHHHHHHH----HHHHHhcCCCcEEEEEeeccc
Q 006816 187 SEDISARFKSLGWNTIMVENIHDNLSSFKEA----LMAAANETKKPTFIRVKKMRE 238 (630)
Q Consensus 187 ~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~a----l~~a~~~~~~P~~i~~~t~k~ 238 (630)
..|+ ...+.+||-++.. . |+.+..+. ++-|.+ ...|+++-..+...
T Consensus 108 q~D~-~~~~d~~~~vl~p---~-~~QEa~d~~~~A~~lAe~-~~~PViv~~Dg~~~ 157 (230)
T PF01855_consen 108 QDDL-MAARDSGWIVLAP---S-SPQEAYDMTLIAFNLAEK-YQTPVIVLFDGFLC 157 (230)
T ss_dssp SHHH-HHTTTSS-EEEE------SHHHHHHHHHHHHHHHHH-HTSEEEEEEECCCC
T ss_pred hhHH-HHHHhcCeEEEeC---C-CHHHHHHHHHHHHHHHHH-HCCCEEEEechhhh
Confidence 1222 2234789998887 4 77765544 344444 57899888776665
No 292
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=77.23 E-value=4.9 Score=36.51 Aligned_cols=106 Identities=19% Similarity=0.118 Sum_probs=63.7
Q ss_pred chHHHHHHHHHHHhcCCCCceEeeehHHHHHhhHHHHHHh-cccCCCeEEEEecCCCCCCCCCCCCC--ChhhhHHhhcC
Q 006816 373 REHAMAGISNGVALHGGGLIPFAATFLIFSDYMKNSIRLS-ALSHAGVIYILTHDSIGLGEDGPTHQ--PVEQLAGLRAV 449 (630)
Q Consensus 373 aE~~~vg~a~GlA~~G~~~~pv~~~~~~F~~~a~dqi~~~-a~~~~pv~~v~~~~g~~~g~~G~tHq--~~~d~a~l~~i 449 (630)
+|..-+|+++|..+.| .+|-.-+-.+=+-...+.+--. ..-++|..++.+|-|. .+++=+.+- +-.-..+|+.
T Consensus 50 REEeg~GIcAGa~lAG--kk~ailmQnsGlGNsiNal~SL~~ty~iPl~ml~ShRG~-~~E~i~AQVpmGr~~~kiLe~- 125 (172)
T COG4032 50 REEEGVGICAGAYLAG--KKPAILMQNSGLGNSINALASLYVTYKIPLLMLASHRGV-LKEGIEAQVPMGRALPKILEG- 125 (172)
T ss_pred chhcceeeehhhhhcC--CCcEEEEeccCcchHHHHHHHHHHHhccchhhhhhccch-hhcCCccccccchhhHHHHhh-
Confidence 5777889999999999 8988765333333333333221 3457898888766554 444333331 1111222222
Q ss_pred CCcEEEecCChHHHHHHHHH----HHHcCCCcEEEEEc
Q 006816 450 PRLLAFRPADGNETAGSYRV----AIANRDVPSVIALS 483 (630)
Q Consensus 450 P~l~v~~P~d~~e~~~~l~~----a~~~~~~P~~ir~~ 483 (630)
-++..|.|-.+.|+..++.. +++. ..|+.+.++
T Consensus 126 ~~lpt~t~~~p~Ea~~li~~~~~~a~~~-s~pv~vlls 162 (172)
T COG4032 126 LELPTYTIIGPEEALPLIENAILDAFEN-SRPVAVLLS 162 (172)
T ss_pred cCCcccccCCHHHHHHHHHHHHHHHHHc-CCceEEEec
Confidence 24667888888887666654 4554 778888765
No 293
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=76.73 E-value=15 Score=39.22 Aligned_cols=105 Identities=10% Similarity=0.052 Sum_probs=67.6
Q ss_pred hhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCcccccccccC
Q 006816 107 QGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGPTSLVL 186 (630)
Q Consensus 107 ~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~~~~~~ 186 (630)
.++.+|+|++++- .++++.+.+..+. ..+|.+..|+-..+|.++++++.-+=+.. .++ ..
T Consensus 59 aA~~~a~GAs~aG----------------~Ra~taTSg~Gl~--lm~E~l~~a~~~e~P~v~v~v~R~~p~~g-~t~-~e 118 (352)
T PRK07119 59 AAINMVYGAAATG----------------KRVMTSSSSPGIS--LKQEGISYLAGAELPCVIVNIMRGGPGLG-NIQ-PS 118 (352)
T ss_pred HHHHHHHHHHhhC----------------CCEEeecCcchHH--HHHHHHHHHHHccCCEEEEEeccCCCCCC-CCc-ch
Confidence 5778888888865 5799999999999 99999999999999976666654422111 111 11
Q ss_pred hhcHHHHHH-----hCCCeEEEEeCCCCCHHHHHHH----HHHHHhcCCCcEEEEEeec
Q 006816 187 SEDISARFK-----SLGWNTIMVENIHDNLSSFKEA----LMAAANETKKPTFIRVKKM 236 (630)
Q Consensus 187 ~~~~~~~~~-----a~G~~~~~v~dG~~d~~~l~~a----l~~a~~~~~~P~~i~~~t~ 236 (630)
..|..-..+ .++|-++.+ . |+++.++. ++-|.+ ..-|+++-..++
T Consensus 119 q~D~~~~~~~~ghgd~~~~vl~p---~-~~qEa~d~~~~Af~lAE~-~~~PViv~~D~~ 172 (352)
T PRK07119 119 QGDYFQAVKGGGHGDYRLIVLAP---S-SVQEMVDLTMLAFDLADK-YRNPVMVLGDGV 172 (352)
T ss_pred hHHHHHHHhcCCCCCcceEEEeC---C-CHHHHHHHHHHHHHHHHH-hCCCEEEEcchh
Confidence 122211111 345776666 5 77776554 333444 467998877664
No 294
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=76.48 E-value=24 Score=32.74 Aligned_cols=87 Identities=14% Similarity=0.087 Sum_probs=46.9
Q ss_pred eEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCC-CcccccccccChhcHHHHHHhCCCeEEEEeCCCCCHHHHH
Q 006816 137 RTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNH-NTIDGPTSLVLSEDISARFKSLGWNTIMVENIHDNLSSFK 215 (630)
Q Consensus 137 ~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~-~~i~~~~~~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~ 215 (630)
.+++..|-|.. .....|..|...+.| +++|.-+.. .....+.......+....++. -+.+..+ . +++++.
T Consensus 67 v~~~~~gpG~~---n~~~~l~~a~~~~~P-~v~i~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~-~~~~~~ 137 (160)
T cd07034 67 AMTATSGPGLN---LMAEALYLAAGAELP-LVIVVAQRPGPSTGLPKPDQSDLMAARYGGH-PWPVLAP---S-SVQEAF 137 (160)
T ss_pred EEEeeCcchHH---HHHHHHHHHHhCCCC-EEEEEeeCCCCCCCCCCcCcHHHHHHHhCCC-CEEEEeC---C-CHHHHH
Confidence 34445566666 467788889888988 555544332 222211001111222333433 4666666 4 666655
Q ss_pred HH----HHHHHhcCCCcEEEEE
Q 006816 216 EA----LMAAANETKKPTFIRV 233 (630)
Q Consensus 216 ~a----l~~a~~~~~~P~~i~~ 233 (630)
+. ++.+.. .++|++|..
T Consensus 138 ~~~~~A~~~a~~-~~~Pv~l~~ 158 (160)
T cd07034 138 DLALEAFELAEK-YRLPVIVLS 158 (160)
T ss_pred HHHHHHHHHHHH-hCCCEEEEc
Confidence 44 555555 458998875
No 295
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=75.82 E-value=19 Score=37.14 Aligned_cols=107 Identities=10% Similarity=-0.044 Sum_probs=62.2
Q ss_pred HHHHHHHHHHhcCCCCceEeee--hHHHHHhhHHHHHHhcccCCCeEEEEecCCCCCCCCCCCC--------------C-
Q 006816 376 AMAGISNGVALHGGGLIPFAAT--FLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTH--------------Q- 438 (630)
Q Consensus 376 ~~vg~a~GlA~~G~~~~pv~~~--~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~~g~~G~tH--------------q- 438 (630)
..+.+|.|.++.- +-++|+.+ -.+|+......+-.++..++|++++.-..+. +|.-+... .
T Consensus 72 ~alPaAiGaklA~-Pdr~VV~i~GDG~f~~~g~~el~ta~r~nlpi~iIV~NN~~-yGmt~~Q~~~~t~~g~~~~~~~~g 149 (277)
T PRK09628 72 RAVAYATGIKLAN-PDKHVIVVSGDGDGLAIGGNHTIHGCRRNIDLNFILINNFI-YGLTNSQTSPTTPKGMWTVTAQYG 149 (277)
T ss_pred cHHHHHHHHHHHC-CCCeEEEEECchHHHHhhHHHHHHHHHhCcCeEEEEEEChH-HhcceecccCCCCCCceeeeccCC
Confidence 5666788877754 24555554 5667542222333457779998887744432 22211000 0
Q ss_pred ---ChhhhHHhhcCCCcEE---EecCChHHHHHHHHHHHHcCCCcEEEEEcCC
Q 006816 439 ---PVEQLAGLRAVPRLLA---FRPADGNETAGSYRVAIANRDVPSVIALSRQ 485 (630)
Q Consensus 439 ---~~~d~a~l~~iP~l~v---~~P~d~~e~~~~l~~a~~~~~~P~~ir~~r~ 485 (630)
+..|.+-+..-=|+.- ....++.|++.+++.|++. ++|++|-+...
T Consensus 150 ~~~~~~D~~~lA~a~G~~~va~~~v~~~~el~~al~~Al~~-~Gp~lIeV~~~ 201 (277)
T PRK09628 150 NIDPTFDACKLATAAGASFVARESVIDPQKLEKLLVKGFSH-KGFSFFDVFSN 201 (277)
T ss_pred CcCCCCCHHHHHHHCCCceEEEEccCCHHHHHHHHHHHHhC-CCCEEEEEcCC
Confidence 1112222222224443 5789999999999999997 99999966443
No 296
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=75.16 E-value=15 Score=41.58 Aligned_cols=118 Identities=19% Similarity=0.077 Sum_probs=71.5
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCceEee-ehHHHHHhhHHHHHHhcccCCCeEEEEecCCCC-CCCCCCC-CCC--h
Q 006816 366 RNIRYGVREHAMAGISNGVALHGGGLIPFAA-TFLIFSDYMKNSIRLSALSHAGVIYILTHDSIG-LGEDGPT-HQP--V 440 (630)
Q Consensus 366 R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~-~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~-~g~~G~t-Hq~--~ 440 (630)
|++.+ --|++++-+|-|.|..- |...++. +..+=+..+..-|..+...+.||+++....... .+.+... ||. +
T Consensus 40 ~~v~~-rhE~~A~~~Adgyar~t-g~~gv~~~t~GpG~~n~~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~ 117 (535)
T TIGR03394 40 PLHTL-SHEPAVGFAADAAARYR-GTLGVAAVTYGAGAFNMVNAIAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTL 117 (535)
T ss_pred eEEcc-cCcchHHHHHhHHHHhh-CCceEEEEecchHHHhhhhHHHHHhhcCCCEEEEECCCCcccccCCceeEeeccch
Confidence 66664 88999999999999864 2444443 454444456666666677899999985222211 2332222 454 3
Q ss_pred h-hhHHhhcCCCc--EEEecCC-hHHHHHHHHHHHHcCCCcEEEEEcCCC
Q 006816 441 E-QLAGLRAVPRL--LAFRPAD-GNETAGSYRVAIANRDVPSVIALSRQK 486 (630)
Q Consensus 441 ~-d~a~l~~iP~l--~v~~P~d-~~e~~~~l~~a~~~~~~P~~ir~~r~~ 486 (630)
. +..+++.+=-. +|..|.+ +..+..+++.|+.. ++|++|-+|+.-
T Consensus 118 ~~~~~~~~~vtk~~~~v~~~~~~~~~~~~A~~~a~~~-~gPv~i~iP~Dv 166 (535)
T TIGR03394 118 DSQFQVFKEVTCDQAVLDDPATAPAEIARVLGSAREL-SRPVYLEIPRDM 166 (535)
T ss_pred HHHHHhhhhheEEEEEeCChHHhHHHHHHHHHHHHHC-CCCEEEEechhh
Confidence 3 34677765332 2233433 23345566666664 799999999763
No 297
>PRK12753 transketolase; Reviewed
Probab=73.94 E-value=31 Score=40.30 Aligned_cols=81 Identities=22% Similarity=0.241 Sum_probs=58.4
Q ss_pred cccCchhHHHHHHHhHHcCCCcEEEEEECCCCcc--cccccccChhcHHHHHHhC-CCeEEEEeCCCCCHHHHHHHHHHH
Q 006816 145 GCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTI--DGPTSLVLSEDISARFKSL-GWNTIMVENIHDNLSSFKEALMAA 221 (630)
Q Consensus 145 G~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i--~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~d~~~l~~al~~a 221 (630)
..|.. ..++.+..++..++| +++|.-..+++. ++++. +..+|+ ..+++. |+.++.. - |..++..+++.+
T Consensus 435 ~~F~~-r~~~qir~~a~~~l~-V~~v~thdg~~~G~DG~TH-q~iedl-a~lR~iPn~~v~~P---a-D~~E~~~~~~~a 506 (663)
T PRK12753 435 LMFVE-YARNAARMAALMKAR-QIMVYTHDSIGLGEDGPTH-QPVEQL-ASLRLTPNFSTWRP---C-DQVEAAVAWKLA 506 (663)
T ss_pred HHHHH-HHHHHHHHHHhcCCC-eEEEEeCCCcccCCCCccc-ccHHHH-HHHhcCCCCEEEcc---C-CHHHHHHHHHHH
Confidence 46665 889999999999998 777755555544 44443 223454 456666 9999998 4 888999999888
Q ss_pred HhcCCCcEEEEE
Q 006816 222 ANETKKPTFIRV 233 (630)
Q Consensus 222 ~~~~~~P~~i~~ 233 (630)
.+..++|+.|..
T Consensus 507 l~~~~gP~~irl 518 (663)
T PRK12753 507 IERHNGPTALIL 518 (663)
T ss_pred HhcCCCCEEEEe
Confidence 753479998865
No 298
>PRK12754 transketolase; Reviewed
Probab=73.44 E-value=30 Score=40.26 Aligned_cols=81 Identities=20% Similarity=0.209 Sum_probs=58.2
Q ss_pred cccCchhHHHHHHHhHHcCCCcEEEEEECCCCcc--cccccccChhcHHHHHHhC-CCeEEEEeCCCCCHHHHHHHHHHH
Q 006816 145 GCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTI--DGPTSLVLSEDISARFKSL-GWNTIMVENIHDNLSSFKEALMAA 221 (630)
Q Consensus 145 G~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i--~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~d~~~l~~al~~a 221 (630)
..|.+ ..++++.+++..++| +++|....+++. ++++. +..+|+ ..+++. |+.+++. - |..++..+++.+
T Consensus 435 ~~F~~-r~~~qir~~a~~~l~-V~~v~th~gi~~G~DG~TH-q~iEdl-a~lR~iPn~~V~~P---a-D~~E~~~~~~~a 506 (663)
T PRK12754 435 LMFVE-YARNAVRMAALMKQR-QVMVYTHDSIGLGEDGPTH-QPVEQV-ASLRVTPNMSTWRP---C-DQVESAVAWKYG 506 (663)
T ss_pred HHHHH-HHHHHHHHHHHcCCC-eEEEEECCccccCCCCCCc-ccHHHH-HHHhcCCCcEEecC---C-CHHHHHHHHHHH
Confidence 46655 789999999999998 777776666655 44443 223454 356666 9999988 4 888999999888
Q ss_pred HhcCCCcEEEEE
Q 006816 222 ANETKKPTFIRV 233 (630)
Q Consensus 222 ~~~~~~P~~i~~ 233 (630)
.+..++|+.|..
T Consensus 507 ~~~~~gP~yirl 518 (663)
T PRK12754 507 VERQDGPTALIL 518 (663)
T ss_pred HhCCCCCEEEEe
Confidence 763479997765
No 299
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=72.27 E-value=17 Score=41.57 Aligned_cols=110 Identities=14% Similarity=0.057 Sum_probs=71.4
Q ss_pred hhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCcccccccccC
Q 006816 107 QGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGPTSLVL 186 (630)
Q Consensus 107 ~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~~~~~~ 186 (630)
.++.+|+|+++|- .++++.+.=.++. ...|.+.+|+-..+|.+++++++-+-+..-++....
T Consensus 248 aA~~~a~GAs~aG----------------~Ra~taTSg~Gl~--lm~E~l~~a~~~~~P~Vi~~~~R~gpstg~~t~~eq 309 (562)
T TIGR03710 248 AAINMAIGASYAG----------------ARAMTATSGPGFA--LMTEALGLAGMTETPLVIVDVQRGGPSTGLPTKTEQ 309 (562)
T ss_pred HHHHHHHhHHhcC----------------CceeecCCCCChh--HhHHHHhHHHhccCCEEEEEcccCCCCCCCCCCccH
Confidence 4677888888865 5688888888888 899999999999999777777766544332332212
Q ss_pred hhcHHHHHH---hCCCeEEEEeCCCCCHHHHHHH----HHHHHhcCCCcEEEEEeecccc
Q 006816 187 SEDISARFK---SLGWNTIMVENIHDNLSSFKEA----LMAAANETKKPTFIRVKKMRER 239 (630)
Q Consensus 187 ~~~~~~~~~---a~G~~~~~v~dG~~d~~~l~~a----l~~a~~~~~~P~~i~~~t~k~~ 239 (630)
..-+..++. .++|-++.. . |+++..+. ++-|.+ -.-|+++-..++-.+
T Consensus 310 ~D~~~~~~~~hgd~~~ivl~p---~-~~qEa~d~~~~Af~lAe~-~~~PViv~~D~~l~~ 364 (562)
T TIGR03710 310 SDLLFALYGGHGEFPRIVLAP---G-SPEECFYLAIEAFNLAEK-YQTPVIVLSDQYLAN 364 (562)
T ss_pred HHHHHHhcCCCCCcCceEEcC---C-CHHHHHHHHHHHHHHHHH-hcCCEEEEechHHhC
Confidence 222222333 245766666 5 77766544 444444 578998887766443
No 300
>PLN02790 transketolase
Probab=69.44 E-value=41 Score=39.19 Aligned_cols=76 Identities=18% Similarity=0.218 Sum_probs=53.8
Q ss_pred hHHHHHHHhHHcCCCcEEEEEECCCC--cccccccccChhcHHHHHHhC-CCeEEEEeCCCCCHHHHHHHHHHHHhcCCC
Q 006816 151 ISHEAAALAAHWKLNKLTLIYDDNHN--TIDGPTSLVLSEDISARFKSL-GWNTIMVENIHDNLSSFKEALMAAANETKK 227 (630)
Q Consensus 151 ~~~eal~~a~~~~L~~li~i~~~N~~--~i~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~d~~~l~~al~~a~~~~~~ 227 (630)
..++++..++..+|| +++|+...++ +.++++.. ..+|+ ..+++. |+.++.. - |..++..+++.+....++
T Consensus 431 ~~~~~ir~~al~~lp-V~~v~thdg~~~G~DG~THq-~iedl-a~lR~iPnl~V~~P---a-D~~E~~~~l~~al~~~~g 503 (654)
T PLN02790 431 YMRAAMRLSALSEAG-VIYVMTHDSIGLGEDGPTHQ-PIEHL-ASLRAMPNILMLRP---A-DGNETAGAYKVAVTNRKR 503 (654)
T ss_pred HHHHHHHHHHhcCCC-eEEEEECCceeecCCCCCcc-cHHHH-HHhcCCCCcEEEeC---C-CHHHHHHHHHHHHHcCCC
Confidence 567788889999999 7777744444 44555542 23444 346666 8999998 4 888999999988643579
Q ss_pred cEEEEE
Q 006816 228 PTFIRV 233 (630)
Q Consensus 228 P~~i~~ 233 (630)
|+.|..
T Consensus 504 P~~irl 509 (654)
T PLN02790 504 PTVLAL 509 (654)
T ss_pred CEEEEe
Confidence 998865
No 301
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=68.09 E-value=26 Score=37.35 Aligned_cols=75 Identities=12% Similarity=0.246 Sum_probs=46.6
Q ss_pred hHHHHHHhcccCCCeEEEEecCCCCCCCCCCCCCChhh----hHHhhcCCCcEEEecCChHHHHHHHHHHHHc---CCCc
Q 006816 405 MKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQ----LAGLRAVPRLLAFRPADGNETAGSYRVAIAN---RDVP 477 (630)
Q Consensus 405 a~dqi~~~a~~~~pv~~v~~~~g~~~g~~G~tHq~~~d----~a~l~~iP~l~v~~P~d~~e~~~~l~~a~~~---~~~P 477 (630)
.++.+..++..++||+|++-..+++.+. --..|+-.+ =+.--.|||++| -=.|.-.+..+.+.|++. -++|
T Consensus 176 FhEalN~A~v~klPvvf~ieNN~yAiSv-p~~~q~~~~~~~~ra~aygipgv~V-DG~D~~avy~~~~~A~e~AR~g~GP 253 (358)
T COG1071 176 FHEALNFAAVWKLPVVFVIENNQYAISV-PRSRQTAAEIIAARAAAYGIPGVRV-DGNDVLAVYEAAKEAVERARAGEGP 253 (358)
T ss_pred HHHHHHHHHHhcCCEEEEEecCCceeec-chhhcccchhHHhhhhccCCCeEEE-CCcCHHHHHHHHHHHHHHHHcCCCC
Confidence 4555666799999999999777776542 111233332 233448999999 444444444455555543 2589
Q ss_pred EEEE
Q 006816 478 SVIA 481 (630)
Q Consensus 478 ~~ir 481 (630)
++|-
T Consensus 254 tLIE 257 (358)
T COG1071 254 TLIE 257 (358)
T ss_pred EEEE
Confidence 9995
No 302
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=68.09 E-value=23 Score=37.64 Aligned_cols=88 Identities=16% Similarity=0.188 Sum_probs=50.9
Q ss_pred CceEeeeh--HHHHH-hhHHHHHHhcccCCCeEEEEecCCCCCCCCCCCC-----CChhhhHHhhcCCCcEEEecCChHH
Q 006816 391 LIPFAATF--LIFSD-YMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTH-----QPVEQLAGLRAVPRLLAFRPADGNE 462 (630)
Q Consensus 391 ~~pv~~~~--~~F~~-~a~dqi~~~a~~~~pv~~v~~~~g~~~g~~G~tH-----q~~~d~a~l~~iP~l~v~~P~d~~e 462 (630)
-+++++.+ ..|.+ ..++.+..++..++||++++-..+++.+. +++ ..+.+.+-.-.+|+++|=-+ |..+
T Consensus 157 ~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvifvv~NN~~~i~~--~~~~~~~~~d~a~~a~a~G~~~~~Vdg~-d~~a 233 (341)
T CHL00149 157 LRVTACFFGDGTTNNGQFFECLNMAVLWKLPIIFVVENNQWAIGM--AHHRSTSIPEIHKKAEAFGLPGIEVDGM-DVLA 233 (341)
T ss_pred CCEEEEEeCCchhhhcHHHHHHHHHhhcCCCEEEEEEeCCeeeec--chhheeCCccHHHHHHhCCCCEEEEeCC-CHHH
Confidence 34555554 44543 24455666788899999999777754432 222 12344444446788777332 3332
Q ss_pred ----HHHHHHHHHHcCCCcEEEEE
Q 006816 463 ----TAGSYRVAIANRDVPSVIAL 482 (630)
Q Consensus 463 ----~~~~l~~a~~~~~~P~~ir~ 482 (630)
++.+++.+... ++|++|-.
T Consensus 234 v~~a~~~A~~~ar~~-~gP~lIev 256 (341)
T CHL00149 234 VREVAKEAVERARQG-DGPTLIEA 256 (341)
T ss_pred HHHHHHHHHHHHHhC-CCCEEEEE
Confidence 24555556554 78999854
No 303
>PRK06154 hypothetical protein; Provisional
Probab=65.50 E-value=43 Score=38.29 Aligned_cols=115 Identities=17% Similarity=0.122 Sum_probs=70.7
Q ss_pred CCccccccchHHHHHHHHHHHhcCCCCceEee--ehHHHHHhhHHHHHHhcccCCCeEEEEecCCCC-CCCCCCCCCChh
Q 006816 365 GRNIRYGVREHAMAGISNGVALHGGGLIPFAA--TFLIFSDYMKNSIRLSALSHAGVIYILTHDSIG-LGEDGPTHQPVE 441 (630)
Q Consensus 365 ~R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~--~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~-~g~~G~tHq~~~ 441 (630)
=|++.+ --|++++.+|.|.|..-.|-+|-++ +..+=+..+..-|.++...+.||+++....... .+. ++.+ .
T Consensus 55 i~~i~~-rhE~~A~~mAdgyar~t~g~~~gv~~~t~GPG~~N~~~gla~A~~~~~Pvl~i~G~~~~~~~~~-~~~~---d 129 (565)
T PRK06154 55 IRPVIA-RTERVAVHMADGYARATSGERVGVFAVQYGPGAENAFGGVAQAYGDSVPVLFLPTGYPRGSTDV-APNF---E 129 (565)
T ss_pred CeEEee-CcHHHHHHHHHHHHHhcCCCCCEEEEECCCccHHHHHHHHHHHhhcCCCEEEEeCCCCcccccC-CCCc---c
Confidence 456664 8899999999999985201234333 344434456666677777899999985211111 122 2223 3
Q ss_pred hhHHhhcCCCcEEEecCChHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 006816 442 QLAGLRAVPRLLAFRPADGNETAGSYRVAIA----NRDVPSVIALSRQ 485 (630)
Q Consensus 442 d~a~l~~iP~l~v~~P~d~~e~~~~l~~a~~----~~~~P~~ir~~r~ 485 (630)
...+++.+=- -.....++.++...++.|++ ...+|++|-+|..
T Consensus 130 ~~~~~~~vtk-~~~~v~~~~~~~~~i~~A~~~A~s~~~GPV~l~iP~D 176 (565)
T PRK06154 130 SLRNYRHITK-WCEQVTLPDEVPELMRRAFTRLRNGRPGPVVLELPVD 176 (565)
T ss_pred hhhhHhhcce-eEEECCCHHHHHHHHHHHHHHHhcCCCceEEEecchH
Confidence 3466776644 33456677777766666654 3479999999865
No 304
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=65.45 E-value=73 Score=30.46 Aligned_cols=119 Identities=13% Similarity=-0.015 Sum_probs=65.9
Q ss_pred CCCCCcccccc--chHHHHHHHHHHHhcCCCCceEeee--hHHHHHhhHHHHHHhcccCCCeEEEEecCC-CCCC----C
Q 006816 362 SPWGRNIRYGV--REHAMAGISNGVALHGGGLIPFAAT--FLIFSDYMKNSIRLSALSHAGVIYILTHDS-IGLG----E 432 (630)
Q Consensus 362 ~~p~R~~~~gI--aE~~~vg~a~GlA~~G~~~~pv~~~--~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g-~~~g----~ 432 (630)
..|.+++..+- +=...++.|.|.++.- +-++++.+ -..|.. ....+..++..++|++++....+ ++.- .
T Consensus 38 ~~~~~~~~~~~~g~mG~~l~~aiGaala~-~~~~vv~i~GDG~f~~-~~~el~ta~~~~~p~~ivV~nN~~~~~~~~~~~ 115 (183)
T cd02005 38 PKGTRFISQPLWGSIGYSVPAALGAALAA-PDRRVILLVGDGSFQM-TVQELSTMIRYGLNPIIFLINNDGYTIERAIHG 115 (183)
T ss_pred CCCCEEEeccchhhHhhhHHHHHHHHHhC-CCCeEEEEECCchhhc-cHHHHHHHHHhCCCCEEEEEECCCcEEEEEecc
Confidence 34677876532 1112334566666543 23555543 567744 33335555666788776664443 3310 0
Q ss_pred CCCCCCCh--hhh-HHhhcC---CCcEEEecCChHHHHHHHHHHHH-cCCCcEEEEEc
Q 006816 433 DGPTHQPV--EQL-AGLRAV---PRLLAFRPADGNETAGSYRVAIA-NRDVPSVIALS 483 (630)
Q Consensus 433 ~G~tHq~~--~d~-a~l~~i---P~l~v~~P~d~~e~~~~l~~a~~-~~~~P~~ir~~ 483 (630)
.+..+... .|. .+..++ |++..+...+..|+...++.+++ . ++|++|-+.
T Consensus 116 ~~~~~~~~~~~d~~~ia~a~G~~~~~~~~~v~~~~el~~al~~a~~~~-~~p~liev~ 172 (183)
T cd02005 116 PEASYNDIANWNYTKLPEVFGGGGGGLSFRVKTEGELDEALKDALFNR-DKLSLIEVI 172 (183)
T ss_pred CCcCcccCCCCCHHHHHHHhCCCccccEEEecCHHHHHHHHHHHHhcC-CCcEEEEEE
Confidence 11112111 122 233333 23677778999999999999998 5 899998653
No 305
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=64.88 E-value=57 Score=31.22 Aligned_cols=113 Identities=17% Similarity=0.119 Sum_probs=61.2
Q ss_pred CCCCccccccchHHHHHHHHHHHhcCCCCceEeee--hHHHHHhhHHHHHHhcccC-CCeEEEEecCCCCCCCCC--CCC
Q 006816 363 PWGRNIRYGVREHAMAGISNGVALHGGGLIPFAAT--FLIFSDYMKNSIRLSALSH-AGVIYILTHDSIGLGEDG--PTH 437 (630)
Q Consensus 363 ~p~R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~~--~~~F~~~a~dqi~~~a~~~-~pv~~v~~~~g~~~g~~G--~tH 437 (630)
.|.+++..|- =...++.|.|.++.- -+|++++ -..|..-+ ..+..++..+ +|++++.-..+. +|.-+ ++.
T Consensus 34 ~~~~~~~~gs-mG~~lpaAiGa~la~--~~~Vv~i~GDG~f~m~~-~el~ta~~~~~~pv~~vV~NN~~-yg~~~~q~~~ 108 (181)
T TIGR03846 34 RPLNFYMLGS-MGLASSIGLGLALAT--DRTVIVIDGDGSLLMNL-GVLPTIAAESPKNLILVILDNGA-YGSTGNQPTP 108 (181)
T ss_pred CCCCeeeccc-cccHHHHHHHHHHcC--CCcEEEEEcchHHHhhh-hHHHHHHHhCCCCeEEEEEeCCc-cccccCcCCC
Confidence 4677775331 111234677776664 4566654 56665322 3344445556 588777644432 22212 111
Q ss_pred C--ChhhhHHhhcCCCcEEEe-cCChHHHHHHHHHHHHcCCCcEEEEEc
Q 006816 438 Q--PVEQLAGLRAVPRLLAFR-PADGNETAGSYRVAIANRDVPSVIALS 483 (630)
Q Consensus 438 q--~~~d~a~l~~iP~l~v~~-P~d~~e~~~~l~~a~~~~~~P~~ir~~ 483 (630)
. ...-.++.+++ |+.-.. ..++.|+...|+ +++. ++|++|-+.
T Consensus 109 ~~~~~d~~~lA~a~-G~~~~~~v~~~~~l~~al~-a~~~-~~p~li~v~ 154 (181)
T TIGR03846 109 ASRRTDLELVAKAA-GIRNVEKVADEEELRDALK-ALAM-KGPTFIHVK 154 (181)
T ss_pred CCCCCCHHHHHHHC-CCCeEEEeCCHHHHHHHHH-HHcC-CCCEEEEEE
Confidence 1 11222233333 555555 788999999997 7775 899998653
No 306
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=64.71 E-value=35 Score=36.79 Aligned_cols=106 Identities=13% Similarity=0.139 Sum_probs=67.6
Q ss_pred hhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCcccccccccC
Q 006816 107 QGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGPTSLVL 186 (630)
Q Consensus 107 ~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~~~~~~ 186 (630)
.++.+|+|+++|- .++++.+.=+++. ...|.+.+++-..+|.++++++.-+-+..-++...
T Consensus 58 aA~~~a~GAs~aG----------------~Ra~taTSg~G~~--lm~E~~~~a~~~e~P~V~~~~~R~GpstG~p~~~~- 118 (375)
T PRK09627 58 SGISVALGASMSG----------------VKSMTASSGPGIS--LKAEQIGLGFIAEIPLVIVNVMRGGPSTGLPTRVA- 118 (375)
T ss_pred HHHHHHHHHHhhC----------------CCEEeecCCchHH--HHhhHHHHHHhccCCEEEEEeccCCCcCCCCCccc-
Confidence 4677888888865 5688888888887 88999999999999966666554443333333321
Q ss_pred hhcH-HHHHH---hCCCeEEEEeCCCCCHHHHHHH----HHHHHhcCCCcEEEEEeec
Q 006816 187 SEDI-SARFK---SLGWNTIMVENIHDNLSSFKEA----LMAAANETKKPTFIRVKKM 236 (630)
Q Consensus 187 ~~~~-~~~~~---a~G~~~~~v~dG~~d~~~l~~a----l~~a~~~~~~P~~i~~~t~ 236 (630)
..|+ ..+.. .|+|-++.+ . |+++..+. ++-|.+ -.-|+++-..+.
T Consensus 119 q~D~~~~~~~~hgd~~~ivl~p---~-~~qEa~d~t~~Af~lAE~-~~~PViv~~D~~ 171 (375)
T PRK09627 119 QGDVNQAKNPTHGDFKSIALAP---G-SLEEAYTETVRAFNLAER-FMTPVFLLLDET 171 (375)
T ss_pred hHHHHHHhcCCCCCcCcEEEeC---C-CHHHHHHHHHHHHHHHHH-HcCceEEecchH
Confidence 1232 23333 346655444 5 77766544 444444 567998876653
No 307
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=64.37 E-value=29 Score=39.40 Aligned_cols=115 Identities=17% Similarity=0.045 Sum_probs=73.2
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCceEee-ehHHHHHhhHHHHHHhcccCCCeEEEEecCCCC-CCCCCC--------
Q 006816 366 RNIRYGVREHAMAGISNGVALHGGGLIPFAA-TFLIFSDYMKNSIRLSALSHAGVIYILTHDSIG-LGEDGP-------- 435 (630)
Q Consensus 366 R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~-~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~-~g~~G~-------- 435 (630)
|++.+ --|++++.+|-|.|..- | +.++. +..+=+..+..-|.++...+.||+++....... .+.+-.
T Consensus 41 ~~v~~-rhE~~A~~mAdgyar~t-g-~gv~~~t~GPG~~n~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~ 117 (539)
T TIGR03393 41 CWVGC-ANELNAAYAADGYARCK-G-AAALLTTFGVGELSAINGIAGSYAEHLPVIHIVGAPGTAAQQRGELLHHTLGDG 117 (539)
T ss_pred cEecc-CCcccHHHHhhhhhhhc-C-ceEEEEecCccHHHHhhHHHHHhhccCCEEEEECCCCcchhhcCceeeeecCCC
Confidence 55655 78999999999999975 4 46654 566656666677777777799999985221110 110001
Q ss_pred CCCChhhhHHhhcCCCcE-EEecCC-hHHHHHHHHHHHHcCCCcEEEEEcCCC
Q 006816 436 THQPVEQLAGLRAVPRLL-AFRPAD-GNETAGSYRVAIANRDVPSVIALSRQK 486 (630)
Q Consensus 436 tHq~~~d~a~l~~iP~l~-v~~P~d-~~e~~~~l~~a~~~~~~P~~ir~~r~~ 486 (630)
.+|.. ..+++.+--.. +..|.+ +..+..+++.|+.. .+|++|-+|+.-
T Consensus 118 ~~q~~--~~~~~~itk~~~~~~~~~~~~~i~~a~~~A~~~-~gPv~l~iP~Dv 167 (539)
T TIGR03393 118 DFRHF--YRMAAEVTVAQAVLTEQNATAEIDRVITTALRE-RRPGYLMLPVDV 167 (539)
T ss_pred chHHH--HHHhhceEEEEEEeChhhhHHHHHHHHHHHHhc-CCCEEEEecccc
Confidence 12221 23444332111 225666 78899999999987 689999999763
No 308
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=64.17 E-value=45 Score=38.01 Aligned_cols=118 Identities=16% Similarity=0.085 Sum_probs=75.9
Q ss_pred CCCccccccchHHHHHHHHHHHhcCCCCceEee-ehHHHHHhhHHHHHHhcccCCCeEEEEecCCCCCCCCCCCCCChhh
Q 006816 364 WGRNIRYGVREHAMAGISNGVALHGGGLIPFAA-TFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQ 442 (630)
Q Consensus 364 p~R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~-~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~~g~~G~tHq~~~d 442 (630)
.=|++.+ --||.++.+|.|.|..- |..-||. +-.+=++-+..-|.++-..+.|++++. +.-.....+=..+|-++.
T Consensus 39 ~i~~I~~-RHEq~Aa~mAdgyar~T-GkpgV~~~tsGPGatN~~tgla~A~~d~~Pll~it-Gqv~~~~~g~~afQe~D~ 115 (550)
T COG0028 39 GIRHILV-RHEQGAAFAADGYARAT-GKPGVCLVTSGPGATNLLTGLADAYMDSVPLLAIT-GQVPTSLIGTDAFQEVDQ 115 (550)
T ss_pred CCcEEEe-ccHHHHHHHHHHHHHHc-CCCEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe-CCccccccCcchhhhcch
Confidence 4566666 78999999999999864 2544543 333323344555555566789999985 221211111234677777
Q ss_pred hHHhhcCCCcEEEecCChHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 006816 443 LAGLRAVPRLLAFRPADGNETAGSYRVAIA----NRDVPSVIALSRQ 485 (630)
Q Consensus 443 ~a~l~~iP~l~v~~P~d~~e~~~~l~~a~~----~~~~P~~ir~~r~ 485 (630)
.++++.+-- ..+...+++|+-..++.|++ .+.+|++|-+|+.
T Consensus 116 ~~l~~p~tk-~~~~v~~~~~ip~~i~~Af~~A~sgrpGpv~i~iP~D 161 (550)
T COG0028 116 VGLFRPITK-YNFEVRSPEDIPEVVARAFRIALSGRPGPVVVDLPKD 161 (550)
T ss_pred hhHhhhhhe-eEEEeCCHHHHHHHHHHHHHHHhcCCCceEEEEcChh
Confidence 778876654 34556677887777776654 3568999999875
No 309
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=61.86 E-value=72 Score=27.97 Aligned_cols=79 Identities=18% Similarity=0.152 Sum_probs=39.7
Q ss_pred hHHHHHHHhHHcCCCcEEEEEECCCCcccccccccChhcHHHHHHhCCCeEEEE-eCCCCCH-HHHHHHHHHHHhcCCCc
Q 006816 151 ISHEAAALAAHWKLNKLTLIYDDNHNTIDGPTSLVLSEDISARFKSLGWNTIMV-ENIHDNL-SSFKEALMAAANETKKP 228 (630)
Q Consensus 151 ~~~eal~~a~~~~L~~li~i~~~N~~~i~~~~~~~~~~~~~~~~~a~G~~~~~v-~dG~~d~-~~l~~al~~a~~~~~~P 228 (630)
..-+.+..++..+.. -|+|+---+-. + ......++.+.+++.|+.++.+ +++. ++ .+-.+++.++.+..++|
T Consensus 15 ~~~~d~~~la~~Gfk---tVInlRpd~E~-~-~qp~~~~~~~~a~~~Gl~y~~iPv~~~-~~~~~~v~~f~~~l~~~~~P 88 (110)
T PF04273_consen 15 PSPEDLAQLAAQGFK---TVINLRPDGEE-P-GQPSSAEEAAAAEALGLQYVHIPVDGG-AITEEDVEAFADALESLPKP 88 (110)
T ss_dssp --HHHHHHHHHCT-----EEEE-S-TTST-T-T-T-HHCHHHHHHHCT-EEEE----TT-T--HHHHHHHHHHHHTTTTS
T ss_pred CCHHHHHHHHHCCCc---EEEECCCCCCC-C-CCCCHHHHHHHHHHcCCeEEEeecCCC-CCCHHHHHHHHHHHHhCCCC
Confidence 456778888888865 34443221111 1 1113456788899999988653 2333 22 23334455554436789
Q ss_pred EEEEEee
Q 006816 229 TFIRVKK 235 (630)
Q Consensus 229 ~~i~~~t 235 (630)
++++|+|
T Consensus 89 vl~hC~s 95 (110)
T PF04273_consen 89 VLAHCRS 95 (110)
T ss_dssp EEEE-SC
T ss_pred EEEECCC
Confidence 9999987
No 310
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=60.66 E-value=37 Score=36.47 Aligned_cols=74 Identities=19% Similarity=0.262 Sum_probs=44.6
Q ss_pred hhHHHHHHhcccCCCeEEEEecCCCCCCCCCCCCCChhhhH-HhhcCCCcEEEecCChHHHHHHH---HHHHH---cCCC
Q 006816 404 YMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQLA-GLRAVPRLLAFRPADGNETAGSY---RVAIA---NRDV 476 (630)
Q Consensus 404 ~a~dqi~~~a~~~~pv~~v~~~~g~~~g~~G~tHq~~~d~a-~l~~iP~l~v~~P~d~~e~~~~l---~~a~~---~~~~ 476 (630)
..++.+..++..++|+++++...+++.+.--.-+....+++ ....+|+++| |.+|+.+++ +.|++ . ++
T Consensus 176 ~~~Ealn~A~~~~lPvvfvveNN~~aist~~~~~~~~~~~~~~~~~~p~~~V----DG~D~~av~~a~~~A~~~aR~-~g 250 (362)
T PLN02269 176 QLFEALNIAALWDLPVIFVCENNHYGMGTAEWRAAKSPAYYKRGDYVPGLKV----DGMDVLAVKQACKFAKEHALS-NG 250 (362)
T ss_pred HHHHHHHHhhccCcCEEEEEeCCCEeccCchhhhccchHHHHhhcCCCeEEE----CCCCHHHHHHHHHHHHHHHHh-CC
Confidence 46777777899999999998777665432111112222221 1235788776 666666554 44443 3 78
Q ss_pred cEEEEE
Q 006816 477 PSVIAL 482 (630)
Q Consensus 477 P~~ir~ 482 (630)
|++|-.
T Consensus 251 P~lIe~ 256 (362)
T PLN02269 251 PIVLEM 256 (362)
T ss_pred CEEEEE
Confidence 999964
No 311
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=58.89 E-value=76 Score=32.79 Aligned_cols=112 Identities=24% Similarity=0.241 Sum_probs=73.1
Q ss_pred cccccch-hHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHh-HHcCCCcEEEEEECCCCcc
Q 006816 101 TTGPLGQ-GVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALA-AHWKLNKLTLIYDDNHNTI 178 (630)
Q Consensus 101 ~~G~lG~-~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a-~~~~L~~li~i~~~N~~~i 178 (630)
..|..=| .++.|.|+|++-| .-.+++=+.|..+-.||=+... +..+|| +-+|.-+-+++.
T Consensus 53 NvGIaEQ~mvg~AAGLA~~Gk-----------------~Pfv~tfa~F~s~Ra~EQir~~iay~~ln-VKiv~t~~G~t~ 114 (312)
T COG3958 53 NVGIAEQDMVGTAAGLALAGK-----------------KPFVSTFAAFLSRRAWEQIRNSIAYNNLN-VKIVATHAGVTY 114 (312)
T ss_pred ecchHHHHHHHHHHHHHhcCC-----------------CceeechHHHHHHHHHHHHHHHhhhccCC-eEEEEecCCccc
Confidence 3444444 3477888887652 2234456889888899988654 556666 778888877654
Q ss_pred c--ccccccChhcHHHHHHhC-CCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeecccc
Q 006816 179 D--GPTSLVLSEDISARFKSL-GWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRER 239 (630)
Q Consensus 179 ~--~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~~ 239 (630)
. +++. +..+|+ .+++++ ++.++.. . |.-+..+.+..+.+ .++|+.+. +.|++
T Consensus 115 g~dG~sH-q~~EDi-aimR~lpn~~V~~P---~-D~v~~~~i~~~~~~-~~GP~Y~R--l~R~~ 169 (312)
T COG3958 115 GEDGSSH-QALEDI-AIMRGLPNMTVIAP---A-DAVETRAILDQIAD-YKGPVYMR--LGRGK 169 (312)
T ss_pred CCCCccc-hhHHHH-HHHhcCCCceEEcc---C-cHHHHHHHHHHHHh-cCCCEEEE--ecCCC
Confidence 3 3332 234555 467776 5677666 4 77788888888887 78999874 45543
No 312
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=58.03 E-value=94 Score=33.78 Aligned_cols=105 Identities=19% Similarity=0.200 Sum_probs=66.5
Q ss_pred hhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCcccccccc-c
Q 006816 107 QGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGPTSL-V 185 (630)
Q Consensus 107 ~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~~~~-~ 185 (630)
.++.+|+|+++|- .++++.+.=.++. ...|.+.+|+-..+|.++.+. |+-.- ++... .
T Consensus 60 aA~~~aiGAs~aG----------------aRa~TaTSg~Gl~--lm~E~l~~aa~~~lPiVi~~~--~R~~p-~~~~~~~ 118 (390)
T PRK08366 60 SAMAACIGASAAG----------------ARAFTATSAQGLA--LMHEMLHWAAGARLPIVMVDV--NRAMA-PPWSVWD 118 (390)
T ss_pred HHHHHHHHHHhhC----------------CCeEeeeCcccHH--HHhhHHHHHHhcCCCEEEEEe--ccCCC-CCCCCcc
Confidence 4778888888865 5688888888888 899999999999999444443 33211 22211 1
Q ss_pred ChhcHHHHHHhCCCeEEEEeCCCCCHHHHHH----HHHHHHhcCCCcEEEEEeeccc
Q 006816 186 LSEDISARFKSLGWNTIMVENIHDNLSSFKE----ALMAAANETKKPTFIRVKKMRE 238 (630)
Q Consensus 186 ~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~----al~~a~~~~~~P~~i~~~t~k~ 238 (630)
...|+. ..+.-||-++.. . |+++..+ |++-|.+ -.-|+++-..+++.
T Consensus 119 ~q~D~~-~~~d~g~i~~~~---~-~~QEa~d~t~~Af~lAE~-~~~PViv~~Dg~~~ 169 (390)
T PRK08366 119 DQTDSL-AQRDTGWMQFYA---E-NNQEVYDGVLMAFKVAET-VNLPAMVVESAFIL 169 (390)
T ss_pred hhhHHH-HHhhcCEEEEeC---C-CHHHHHHHHHHHHHHHHH-HCCCEEEEecCccc
Confidence 123433 234458866665 4 6766544 3444444 57899887765543
No 313
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=57.97 E-value=47 Score=34.42 Aligned_cols=88 Identities=14% Similarity=0.149 Sum_probs=49.9
Q ss_pred ceEeee--hHHHHHh-hHHHHHHhcccCCCeEEEEecCCCCCCCCCCCCC--ChhhhHHh---hcCCCcEEEecCChHHH
Q 006816 392 IPFAAT--FLIFSDY-MKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQ--PVEQLAGL---RAVPRLLAFRPADGNET 463 (630)
Q Consensus 392 ~pv~~~--~~~F~~~-a~dqi~~~a~~~~pv~~v~~~~g~~~g~~G~tHq--~~~d~a~l---~~iP~l~v~~P~d~~e~ 463 (630)
++++.+ -..|.+- .++.+..++..++|+++++...+++.. .++.. +..|.+-+ -.+|+++| -=.|..++
T Consensus 127 ~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~vv~NN~~~i~--~~~~~~~~~~~~~~~a~a~G~~~~~V-dg~d~~~v 203 (293)
T cd02000 127 RVAVCFFGDGATNEGDFHEALNFAALWKLPVIFVCENNGYAIS--TPTSRQTAGTSIADRAAAYGIPGIRV-DGNDVLAV 203 (293)
T ss_pred CEEEEEeCCCccccchHHHHHHHHHhhCCCEEEEEeeCCeecc--CCHHHHhCCccHHHHHHhCCCCEEEE-CCCCHHHH
Confidence 445544 4457553 456677788889999999877765432 22221 12333322 24555444 22245666
Q ss_pred HHHHHHHHH---cCCCcEEEEE
Q 006816 464 AGSYRVAIA---NRDVPSVIAL 482 (630)
Q Consensus 464 ~~~l~~a~~---~~~~P~~ir~ 482 (630)
...++.|++ ..++|++|-+
T Consensus 204 ~~a~~~A~~~ar~~~~P~lIev 225 (293)
T cd02000 204 YEAAKEAVERARAGGGPTLIEA 225 (293)
T ss_pred HHHHHHHHHHHHccCCCEEEEE
Confidence 666666663 2378999864
No 314
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=56.52 E-value=34 Score=35.66 Aligned_cols=102 Identities=19% Similarity=0.227 Sum_probs=59.2
Q ss_pred HHHHHHHHh----cCCCCceEe-eehH--HHHH-hhHHHHHHhcccCCCeEEEEecCCCCCCCCC---CCCCChhhhHHh
Q 006816 378 AGISNGVAL----HGGGLIPFA-ATFL--IFSD-YMKNSIRLSALSHAGVIYILTHDSIGLGEDG---PTHQPVEQLAGL 446 (630)
Q Consensus 378 vg~a~GlA~----~G~~~~pv~-~~~~--~F~~-~a~dqi~~~a~~~~pv~~v~~~~g~~~g~~G---~tHq~~~d~a~l 446 (630)
+.+|+|.|+ .| -..++ +.|. +-.+ ..++.+..+++.++||+|++...+++..... .+-..+.+.+..
T Consensus 107 ~p~a~G~A~a~k~~~--~~~v~v~~~GDga~~qG~~~EalN~A~~~~lPvifvveNN~~aist~~~~~~~~~~~~~~a~~ 184 (300)
T PF00676_consen 107 VPIAAGVALAIKYRG--KDGVVVCFFGDGATSQGDFHEALNLAALWKLPVIFVVENNQYAISTPTEEQTASPDIADRAKG 184 (300)
T ss_dssp HHHHHHHHHHHHHTT--SSEEEEEEEETGGGGSHHHHHHHHHHHHTTTSEEEEEEEESEETTEEHHHHCSSSTSGGGGGG
T ss_pred CccccchhHhhhhcC--CceeEEEEecCcccccCccHHHHHHHhhccCCeEEEEecCCcccccCccccccccchhhhhhc
Confidence 455556554 44 33333 3343 3222 4667788889999999999977777643211 111234565666
Q ss_pred hcCCCcEEEecCChHHHHHHHHHHHHc---CCCcEEEEE
Q 006816 447 RAVPRLLAFRPADGNETAGSYRVAIAN---RDVPSVIAL 482 (630)
Q Consensus 447 ~~iP~l~v~~P~d~~e~~~~l~~a~~~---~~~P~~ir~ 482 (630)
-.||+++| -=.|..++...++.|++. -++|++|-.
T Consensus 185 ~gip~~~V-DG~D~~av~~a~~~A~~~~R~g~gP~lie~ 222 (300)
T PF00676_consen 185 YGIPGIRV-DGNDVEAVYEAAKEAVEYARAGKGPVLIEA 222 (300)
T ss_dssp TTSEEEEE-ETTSHHHHHHHHHHHHHHHHTTT--EEEEE
T ss_pred cCCcEEEE-CCEeHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 67887776 345555555566666543 368999853
No 315
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=55.24 E-value=30 Score=28.34 Aligned_cols=59 Identities=22% Similarity=0.275 Sum_probs=38.4
Q ss_pred CcEEEEEeCch-HHHHHHHHHHHHhcCCceEEEEcccccccCcccHHHHhccCCCCCeeEEEEecC
Q 006816 515 PEIILIGTGTE-LSLCEGTAKTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLPSRVVKRVSVEAG 579 (630)
Q Consensus 515 ~dvtiva~G~~-v~~a~~aa~~L~~~gi~~~Vi~~~~i~pld~~~~~~~~~v~~~~~~~~v~vEe~ 579 (630)
.++.|+..+.. ...|++.++.|+..|+.+++ |.+. +.+..+... ..+.+.+.++++.+.
T Consensus 2 ~~v~ii~~~~~~~~~a~~~~~~Lr~~g~~v~~-d~~~-~~~~~~~~~----a~~~g~~~~iiig~~ 61 (91)
T cd00860 2 VQVVVIPVTDEHLDYAKEVAKKLSDAGIRVEV-DLRN-EKLGKKIRE----AQLQKIPYILVVGDK 61 (91)
T ss_pred eEEEEEeeCchHHHHHHHHHHHHHHCCCEEEE-ECCC-CCHHHHHHH----HHHcCCCEEEEECcc
Confidence 57788888764 47899999999999999877 4444 455544322 123344554666544
No 316
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=55.22 E-value=1.1e+02 Score=29.17 Aligned_cols=110 Identities=16% Similarity=0.066 Sum_probs=58.3
Q ss_pred CCCCccccccchHHHHHHHHHHHhcCCCCceEeee--hHHHHHhhHHHHHHhcccC-CCeEEE-EecCCCCCCCCCCCC-
Q 006816 363 PWGRNIRYGVREHAMAGISNGVALHGGGLIPFAAT--FLIFSDYMKNSIRLSALSH-AGVIYI-LTHDSIGLGEDGPTH- 437 (630)
Q Consensus 363 ~p~R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~~--~~~F~~~a~dqi~~~a~~~-~pv~~v-~~~~g~~~g~~G~tH- 437 (630)
.|.+++..|.- ...++.|.|+++.. -++++.+ -..|... ...+..++..+ .|++++ ....+++. .+..+
T Consensus 34 ~~~~~~~~g~m-G~~lp~AiGaala~--~~~vv~i~GDG~f~m~-~~el~ta~~~~~~~l~vvV~NN~~~~~--~~~~~~ 107 (179)
T cd03372 34 RPLNFYMLGSM-GLASSIGLGLALAQ--PRKVIVIDGDGSLLMN-LGALATIAAEKPKNLIIVVLDNGAYGS--TGNQPT 107 (179)
T ss_pred cccccccccch-hhHHHHHHHHHhcC--CCcEEEEECCcHHHhC-HHHHHHHHHcCCCCEEEEEEcCccccc--cCCCCC
Confidence 46677642221 12233677777765 2677765 4566422 23344444444 455555 44444442 12111
Q ss_pred ---CChhhhHHhhcCCCcEEEecC-ChHHHHHHHHHHHHcCCCcEEEEE
Q 006816 438 ---QPVEQLAGLRAVPRLLAFRPA-DGNETAGSYRVAIANRDVPSVIAL 482 (630)
Q Consensus 438 ---q~~~d~a~l~~iP~l~v~~P~-d~~e~~~~l~~a~~~~~~P~~ir~ 482 (630)
...+-..+.+++ |+..+... +.+|+..+++++. ++|++|-.
T Consensus 108 ~~~~~~d~~~lA~a~-G~~~~~v~~~~~el~~al~~a~---~gp~lIev 152 (179)
T cd03372 108 HAGKKTDLEAVAKAC-GLDNVATVASEEAFEKAVEQAL---DGPSFIHV 152 (179)
T ss_pred CCCCCCCHHHHHHHc-CCCeEEecCCHHHHHHHHHHhc---CCCEEEEE
Confidence 111112233333 55556666 9999999999987 58998754
No 317
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=53.25 E-value=66 Score=36.80 Aligned_cols=76 Identities=20% Similarity=0.241 Sum_probs=53.5
Q ss_pred HHHHHHHhHHcCCCcEEEEEECCCC--cccccccccChhcHHHHHHhC-CCeEEEEeCCCCCHHHHHHHHHHHHhcCCCc
Q 006816 152 SHEAAALAAHWKLNKLTLIYDDNHN--TIDGPTSLVLSEDISARFKSL-GWNTIMVENIHDNLSSFKEALMAAANETKKP 228 (630)
Q Consensus 152 ~~eal~~a~~~~L~~li~i~~~N~~--~i~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P 228 (630)
..-|+.+++-.++| +++|+--..+ +.++|+.. +.+...-+++. |+.+++.- |..+...|.+.|.++.++|
T Consensus 441 ~r~AiRlaALm~l~-~~~V~THDSIgvGEDGPTHq--PiEqLa~LRaiPN~~V~RPa----D~~Et~~aw~~Al~~~~gP 513 (663)
T COG0021 441 ARPAVRLAALMGLP-VIYVFTHDSIGVGEDGPTHQ--PVEQLASLRAIPNLSVIRPA----DANETAAAWKYALERKDGP 513 (663)
T ss_pred hhHHHHHHHhcCCC-eEEEEecCceecCCCCCCCC--cHHHHHHhhccCCceeEecC----ChHHHHHHHHHHHhcCCCC
Confidence 34589999999998 7777766655 45666642 22333345555 99999983 5557888888887646899
Q ss_pred EEEEEe
Q 006816 229 TFIRVK 234 (630)
Q Consensus 229 ~~i~~~ 234 (630)
++|...
T Consensus 514 t~Lilt 519 (663)
T COG0021 514 TALILT 519 (663)
T ss_pred eEEEEe
Confidence 999764
No 318
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=50.22 E-value=68 Score=29.25 Aligned_cols=73 Identities=14% Similarity=0.134 Sum_probs=45.5
Q ss_pred CceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCcccccccccChhcHHHHHHhCCCeEEEEeCCCCCHHHH
Q 006816 135 DHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGPTSLVLSEDISARFKSLGWNTIMVENIHDNLSSF 214 (630)
Q Consensus 135 ~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~~~~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l 214 (630)
.++.++++.||.-. +...+.+..+...+.+ +.+|.-.... .....+..+++.-|..++.+ + . +.++|
T Consensus 99 ~~~~iv~iTDG~~~-~~~~~~~~~~~~~~i~-i~~v~~~~~~--------~~~~~l~~la~~tgG~~~~~-~-~-~~~~l 165 (172)
T PF13519_consen 99 RRRAIVLITDGEDN-SSDIEAAKALKQQGIT-IYTVGIGSDS--------DANEFLQRLAEATGGRYFHV-D-N-DPEDL 165 (172)
T ss_dssp EEEEEEEEES-TTH-CHHHHHHHHHHCTTEE-EEEEEES-TT---------EHHHHHHHHHHTEEEEEEE---S-SSHHH
T ss_pred CceEEEEecCCCCC-cchhHHHHHHHHcCCe-EEEEEECCCc--------cHHHHHHHHHHhcCCEEEEe-c-C-CHHHH
Confidence 57899999999766 4556777777766655 3333221111 00235677788889999887 4 3 56778
Q ss_pred HHHHHH
Q 006816 215 KEALMA 220 (630)
Q Consensus 215 ~~al~~ 220 (630)
.++|++
T Consensus 166 ~~~~~~ 171 (172)
T PF13519_consen 166 DDAFQQ 171 (172)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 887764
No 319
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=49.36 E-value=78 Score=34.45 Aligned_cols=105 Identities=18% Similarity=0.271 Sum_probs=65.7
Q ss_pred hhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCccccccccc-
Q 006816 107 QGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGPTSLV- 185 (630)
Q Consensus 107 ~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~~~~~- 185 (630)
.++.+++|++++- .++++.+.=.++. ...|.+.+|+-.++|.++++ -|+ ++..+....
T Consensus 61 aA~~~~~GAs~aG----------------aRa~TaTS~~Gl~--lm~E~l~~aag~~lP~V~vv--~~R-~~~~p~~i~~ 119 (394)
T PRK08367 61 SAISACVGASAAG----------------VRTFTATASQGLA--LMHEVLFIAAGMRLPIVMAI--GNR-ALSAPINIWN 119 (394)
T ss_pred HHHHHHHHHHhhC----------------CCeEeeeccchHH--HHhhHHHHHHHccCCEEEEE--CCC-CCCCCCCcCc
Confidence 5677888888865 5688888777787 88999999999999944443 222 333332211
Q ss_pred ChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHH----HHHHHh-cCCCcEEEEEeecc
Q 006816 186 LSEDISARFKSLGWNTIMVENIHDNLSSFKEA----LMAAAN-ETKKPTFIRVKKMR 237 (630)
Q Consensus 186 ~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~a----l~~a~~-~~~~P~~i~~~t~k 237 (630)
...|+. --+..||-.+.. . |+++..+. ++-|.+ +-.-|+++-..+++
T Consensus 120 d~~D~~-~~rd~g~~~~~a---~-~~QEa~D~~~~Af~lAE~~~~~~Pviv~~Dgf~ 171 (394)
T PRK08367 120 DWQDTI-SQRDTGWMQFYA---E-NNQEALDLILIAFKVAEDERVLLPAMVGFDAFI 171 (394)
T ss_pred chHHHH-hccccCeEEEeC---C-CHHHHHHHHHHHHHHHHHhCcCCCEEEEechhh
Confidence 122332 335678887766 5 77665543 333332 02259988776654
No 320
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=48.13 E-value=73 Score=35.11 Aligned_cols=89 Identities=11% Similarity=0.099 Sum_probs=47.0
Q ss_pred ceEeeehH--HHHH-hhHHHHHHhcccCCCeEEEEecCCCCCCC--CCCCCC-ChhhhHHhhcCCCcEEEecCChHHHH-
Q 006816 392 IPFAATFL--IFSD-YMKNSIRLSALSHAGVIYILTHDSIGLGE--DGPTHQ-PVEQLAGLRAVPRLLAFRPADGNETA- 464 (630)
Q Consensus 392 ~pv~~~~~--~F~~-~a~dqi~~~a~~~~pv~~v~~~~g~~~g~--~G~tHq-~~~d~a~l~~iP~l~v~~P~d~~e~~- 464 (630)
.++++++. .|.+ -.++.+..++..++||++++-..+++.|. .-.|.. .+...+---.+|+++|= =.|..++.
T Consensus 224 ~vvv~~~GDGa~~eG~f~EaLn~A~~~~LPvIfVV~NN~yaig~~~~~~t~~~dia~~A~a~G~~~~~VD-G~D~~av~~ 302 (433)
T PLN02374 224 DVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVD-GMDVLKVRE 302 (433)
T ss_pred CEEEEEECCCccccChHHHHHHHHHHhCCCEEEEEeCCCEeecceeeeccCCCCHHHHHHhcCCcEEEEC-CCCHHHHHH
Confidence 45555543 4443 24667777889999999998666544332 000111 12233333356666542 12222222
Q ss_pred ---HHHHHHHHcCCCcEEEEE
Q 006816 465 ---GSYRVAIANRDVPSVIAL 482 (630)
Q Consensus 465 ---~~l~~a~~~~~~P~~ir~ 482 (630)
.+++.+.+. ++|++|-+
T Consensus 303 a~~~A~~~Ar~g-~gP~LIe~ 322 (433)
T PLN02374 303 VAKEAIERARRG-EGPTLVEC 322 (433)
T ss_pred HHHHHHHHHHHc-CCCEEEEE
Confidence 345555554 78999853
No 321
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=47.91 E-value=66 Score=33.80 Aligned_cols=88 Identities=14% Similarity=0.146 Sum_probs=50.6
Q ss_pred ceEeeeh--HHHHH-hhHHHHHHhcccCCCeEEEEecCCCCCCCCCCCC-----CChhhhHHhhcCCCcEEEecCChHHH
Q 006816 392 IPFAATF--LIFSD-YMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTH-----QPVEQLAGLRAVPRLLAFRPADGNET 463 (630)
Q Consensus 392 ~pv~~~~--~~F~~-~a~dqi~~~a~~~~pv~~v~~~~g~~~g~~G~tH-----q~~~d~a~l~~iP~l~v~~P~d~~e~ 463 (630)
+++++++ ..|.+ ..++.+..+++.++|+++++...+++.. .++. -.+.+++---.+|+++| -=.|..++
T Consensus 133 ~~vv~~~GDGa~~~g~~~ealn~A~~~~lPvi~vv~NN~yg~s--~~~~~~~~~~~~a~~A~a~G~~~~~V-dg~d~~av 209 (315)
T TIGR03182 133 NVTACFFGDGAANQGQFYESFNMAALWKLPVIFVIENNLYAMG--TSVERSSSVTDLYKRGESFGIPGERV-DGMDVLAV 209 (315)
T ss_pred CEEEEEeCCCcccccHHHHHHHHhhccCcCEEEEEEcCCcccc--CCHHHHhCCcCHHHHHHhCCCCEEEE-CCCCHHHH
Confidence 4555544 45654 3445677778899999999877765432 2211 12344444446777665 22345555
Q ss_pred HHHHHHHHH---cCCCcEEEEE
Q 006816 464 AGSYRVAIA---NRDVPSVIAL 482 (630)
Q Consensus 464 ~~~l~~a~~---~~~~P~~ir~ 482 (630)
...++.|++ ..++|++|-+
T Consensus 210 ~~a~~~A~~~ar~~~gP~lIe~ 231 (315)
T TIGR03182 210 REAAKEAVERARSGKGPILLEM 231 (315)
T ss_pred HHHHHHHHHHHHccCCCEEEEE
Confidence 555555553 2378999864
No 322
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=47.87 E-value=1.3e+02 Score=32.98 Aligned_cols=105 Identities=15% Similarity=0.170 Sum_probs=66.7
Q ss_pred hhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCcccccccc-c
Q 006816 107 QGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGPTSL-V 185 (630)
Q Consensus 107 ~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~~~~-~ 185 (630)
.++.+++|++++- .++++.+.=.++. ...|.+.+|+-..+|.++++++... . + +... .
T Consensus 67 ~A~~~~~GAs~aG----------------aRa~TaTS~~Gl~--lm~E~l~~aa~~~~P~V~~~~~R~~-~-~-~~~i~~ 125 (407)
T PRK09622 67 AAMSACVGAAAAG----------------GRVATATSSQGLA--LMVEVLYQASGMRLPIVLNLVNRAL-A-A-PLNVNG 125 (407)
T ss_pred HHHHHHHHHHhhC----------------cCEEeecCcchHH--HHhhHHHHHHHhhCCEEEEEecccc-C-C-CcCCCc
Confidence 5677888888865 5688888888887 8899999999999994444444332 1 1 1111 1
Q ss_pred ChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHH----Hhc-CCCcEEEEEeecc
Q 006816 186 LSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAA----ANE-TKKPTFIRVKKMR 237 (630)
Q Consensus 186 ~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a----~~~-~~~P~~i~~~t~k 237 (630)
...|+.. .+.-||-++.. . |+.+.++....| .+. ..-|+++-..+..
T Consensus 126 d~~D~~~-~r~~g~ivl~p---~-s~QEa~d~~~~Af~lAE~~~~~~Pviv~~Dg~~ 177 (407)
T PRK09622 126 DHSDMYL-SRDSGWISLCT---C-NPQEAYDFTLMAFKIAEDQKVRLPVIVNQDGFL 177 (407)
T ss_pred hHHHHHH-HhcCCeEEEeC---C-CHHHHHHHHHHHHHHHHHhccCCCEEEEechhh
Confidence 1234433 34557877766 5 887766554433 220 2679988776654
No 323
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=47.04 E-value=41 Score=35.67 Aligned_cols=77 Identities=25% Similarity=0.257 Sum_probs=45.9
Q ss_pred hhHHHHHHhcccCCC-eEEEEecCCCCCCCCCCCCC-ChhhhH-HhhcCCCcEEEecCC---hHHHHHHHHHHHHcCCCc
Q 006816 404 YMKNSIRLSALSHAG-VIYILTHDSIGLGEDGPTHQ-PVEQLA-GLRAVPRLLAFRPAD---GNETAGSYRVAIANRDVP 477 (630)
Q Consensus 404 ~a~dqi~~~a~~~~p-v~~v~~~~g~~~g~~G~tHq-~~~d~a-~l~~iP~l~v~~P~d---~~e~~~~l~~a~~~~~~P 477 (630)
.+++.+..++..++. ++++. |.-....||.|-- ..+|+. -++++ |+.|+.-+| ..++..++..|-...+.|
T Consensus 159 ~~~EA~~~A~~~~L~nLi~i~--D~N~~q~dg~~~~~~~~~~~~k~~a~-Gw~v~~v~dGhd~~~i~~A~~~a~~~~~kP 235 (332)
T PF00456_consen 159 SVWEAASLAGHYKLDNLIVIY--DSNGIQIDGPTDIVFSEDIAKKFEAF-GWNVIEVCDGHDVEAIYAAIEEAKASKGKP 235 (332)
T ss_dssp HHHHHHHHHHHTT-TTEEEEE--EEESEETTEEGGGTHHSHHHHHHHHT-T-EEEEEEETTBHHHHHHHHHHHHHSTSS-
T ss_pred hhHHHHHHHHHhCCCCEEEEE--ecCCcccCCCcccccchHHHHHHHHh-hhhhcccccCcHHHHHHHHHHHHHhcCCCC
Confidence 577888777777776 44443 5444556787752 223433 35555 999998854 445555555665555789
Q ss_pred EEEEEc
Q 006816 478 SVIALS 483 (630)
Q Consensus 478 ~~ir~~ 483 (630)
++|...
T Consensus 236 ~~Ii~~ 241 (332)
T PF00456_consen 236 TVIIAR 241 (332)
T ss_dssp EEEEEE
T ss_pred ceeecc
Confidence 999764
No 324
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=44.91 E-value=2.5e+02 Score=27.21 Aligned_cols=74 Identities=14% Similarity=0.061 Sum_probs=48.8
Q ss_pred CCceEEEEEcccccCchh-H-HH-HHHHhHHcCCCcEEEEEECCCCcccccccccChhcHHHHHHhCCCeEEEEeCCCCC
Q 006816 134 VDHRTYCIMSDGCAMEGI-S-HE-AAALAAHWKLNKLTLIYDDNHNTIDGPTSLVLSEDISARFKSLGWNTIMVENIHDN 210 (630)
Q Consensus 134 ~~~~v~~~~GDG~~~eG~-~-~e-al~~a~~~~L~~li~i~~~N~~~i~~~~~~~~~~~~~~~~~a~G~~~~~v~dG~~d 210 (630)
.+.+|+.++-||..+.|. . .+ |...|...+++..++-+-. . ..+.+...++.-|-+++++ . |
T Consensus 110 a~~kvvILLTDG~n~~~~i~P~~aAa~lA~~~gV~iytIgiG~-------~----d~~~l~~iA~~tgG~~F~A---~-d 174 (191)
T cd01455 110 FDEAIVIVLSDANLERYGIQPKKLADALAREPNVNAFVIFIGS-------L----SDEADQLQRELPAGKAFVC---M-D 174 (191)
T ss_pred CCCcEEEEEeCCCcCCCCCChHHHHHHHHHhCCCEEEEEEecC-------C----CHHHHHHHHhCCCCcEEEe---C-C
Confidence 467899999999975544 3 44 3577888888743333221 1 1233555677778999999 4 7
Q ss_pred HHHHHHHHHHHH
Q 006816 211 LSSFKEALMAAA 222 (630)
Q Consensus 211 ~~~l~~al~~a~ 222 (630)
..+|.+.+++..
T Consensus 175 ~~~L~~iy~~I~ 186 (191)
T cd01455 175 TSELPHIMQQIF 186 (191)
T ss_pred HHHHHHHHHHHH
Confidence 777877776654
No 325
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=44.17 E-value=1.2e+02 Score=34.13 Aligned_cols=98 Identities=20% Similarity=0.259 Sum_probs=60.3
Q ss_pred CCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCcccccccccChhcHHHH-------HHhCCCeEEEE--
Q 006816 134 VDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGPTSLVLSEDISAR-------FKSLGWNTIMV-- 204 (630)
Q Consensus 134 ~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~~~~~~~~~~~~~-------~~a~G~~~~~v-- 204 (630)
.|=.|.++.+|-+.+. ++.|++..|..-+.| +++-+|- |+.+- ..++...+- .+.+|-++..+
T Consensus 225 tDIvVLVVAadDGVmp-QT~EaIkhAk~A~Vp-iVvAinK----iDkp~--a~pekv~~eL~~~gi~~E~~GGdVQvipi 296 (683)
T KOG1145|consen 225 TDIVVLVVAADDGVMP-QTLEAIKHAKSANVP-IVVAINK----IDKPG--ANPEKVKRELLSQGIVVEDLGGDVQVIPI 296 (683)
T ss_pred ccEEEEEEEccCCccH-hHHHHHHHHHhcCCC-EEEEEec----cCCCC--CCHHHHHHHHHHcCccHHHcCCceeEEEe
Confidence 5667888888877763 899999999999999 4444442 33331 222222222 45555444322
Q ss_pred --eCCCCCHHHHHHHHHH------HHhcCCCc---EEEEEeecccccC
Q 006816 205 --ENIHDNLSSFKEALMA------AANETKKP---TFIRVKKMRERVN 241 (630)
Q Consensus 205 --~dG~~d~~~l~~al~~------a~~~~~~P---~~i~~~t~k~~~g 241 (630)
.-|. |++.|.+|+-. .++..++| .+||..+.|+. |
T Consensus 297 SAl~g~-nl~~L~eaill~Ae~mdLkA~p~g~~eg~VIES~vdkg~-G 342 (683)
T KOG1145|consen 297 SALTGE-NLDLLEEAILLLAEVMDLKADPKGPAEGWVIESSVDKGR-G 342 (683)
T ss_pred ecccCC-ChHHHHHHHHHHHHHhhcccCCCCCceEEEEEeeecCCc-c
Confidence 2477 99999988541 23323455 48888888877 5
No 326
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=43.87 E-value=51 Score=29.10 Aligned_cols=58 Identities=16% Similarity=0.087 Sum_probs=38.2
Q ss_pred CcEEEEEeC--ch-HHHHHHHHHHHHhcCCceEEEEcccccccCcccHHHHhccCCCCCeeEEEEecC
Q 006816 515 PEIILIGTG--TE-LSLCEGTAKTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLPSRVVKRVSVEAG 579 (630)
Q Consensus 515 ~dvtiva~G--~~-v~~a~~aa~~L~~~gi~~~Vi~~~~i~pld~~~~~~~~~v~~~~~~~~v~vEe~ 579 (630)
.++.|++.+ .. ...|++.++.|++.|+.+++- .+ +.+..+... ..+.+.+.++++.+.
T Consensus 27 ~~v~Ii~~~~~~~~~~~a~~la~~LR~~gi~v~~d-~~--~sl~kqlk~----A~k~g~~~~iiiG~~ 87 (121)
T cd00858 27 IKVAVLPLVKRDELVEIAKEISEELRELGFSVKYD-DS--GSIGRRYAR----QDEIGTPFCVTVDFD 87 (121)
T ss_pred cEEEEEecCCcHHHHHHHHHHHHHHHHCCCEEEEe-CC--CCHHHHHHH----hHhcCCCEEEEECcC
Confidence 689999988 54 578899999999999998874 33 455554322 223344554555544
No 327
>PRK10329 glutaredoxin-like protein; Provisional
Probab=43.33 E-value=87 Score=25.59 Aligned_cols=34 Identities=12% Similarity=0.307 Sum_probs=26.4
Q ss_pred cEEEEEeCchHHHHHHHHHHHHhcCCceEEEEccc
Q 006816 516 EIILIGTGTELSLCEGTAKTLRQEGRRVRVVSLVC 550 (630)
Q Consensus 516 dvtiva~G~~v~~a~~aa~~L~~~gi~~~Vi~~~~ 550 (630)
+|+|.+. +..+.+..+.+.|+++||..+.+|+..
T Consensus 2 ~v~lYt~-~~Cp~C~~ak~~L~~~gI~~~~idi~~ 35 (81)
T PRK10329 2 RITIYTR-NDCVQCHATKRAMESRGFDFEMINVDR 35 (81)
T ss_pred EEEEEeC-CCCHhHHHHHHHHHHCCCceEEEECCC
Confidence 3555554 445788888889999999999999975
No 328
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=41.83 E-value=2.2e+02 Score=32.53 Aligned_cols=94 Identities=19% Similarity=0.172 Sum_probs=58.8
Q ss_pred CceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCC-cccccccccChhcHHHHHHhC-CCeEEEEeCCCCCHH
Q 006816 135 DHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHN-TIDGPTSLVLSEDISARFKSL-GWNTIMVENIHDNLS 212 (630)
Q Consensus 135 ~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~-~i~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~d~~ 212 (630)
-++|+++-. .|.+=--=+-+--.+.++|| ++|.+|..++ +.++++... .-|+. +++.. |+.+... . |.+
T Consensus 382 ~kPvvaIYS--TFLQRAYDQliHDvaiqnLP-V~faIDRAGivG~DG~TH~G-~fDls-~l~~iPnmvi~aP---~-de~ 452 (627)
T COG1154 382 MKPVVAIYS--TFLQRAYDQLIHDVAIQNLP-VTFAIDRAGIVGADGPTHQG-LFDLS-FLRCIPNMVIMAP---R-DEE 452 (627)
T ss_pred CCCEEEEec--HHHHHHHHHHHHHHHhccCC-eEEEEecCcccCCCCCcccc-HHHHH-HHhcCCCcEEecC---C-CHH
Confidence 356777652 22211111223346678999 8899997764 555555422 23443 33433 8888777 5 999
Q ss_pred HHHHHHHHHHhcCCCcEEEEEeecccc
Q 006816 213 SFKEALMAAANETKKPTFIRVKKMRER 239 (630)
Q Consensus 213 ~l~~al~~a~~~~~~P~~i~~~t~k~~ 239 (630)
++.+.+..+....++|+.|.. .||.
T Consensus 453 el~~ml~ta~~~~~gP~AiRy--Prg~ 477 (627)
T COG1154 453 ELRQMLYTALAQDDGPVAIRY--PRGN 477 (627)
T ss_pred HHHHHHHHHHhcCCCCeEEEe--cCCC
Confidence 999999999874458998865 5665
No 329
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=41.80 E-value=2.6e+02 Score=27.70 Aligned_cols=101 Identities=18% Similarity=0.272 Sum_probs=54.0
Q ss_pred ccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCccccc
Q 006816 102 TGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGP 181 (630)
Q Consensus 102 ~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~ 181 (630)
+.+-|..++..+|+|.|.+. ...+++|++=|-.-+. ..-++|..++....+ =||+-+
T Consensus 48 ~~s~g~~~~ttiaLaaAAr~------------TgGR~vCIvp~~~~~~-~~~~~l~~~~~~~~v--Efvvg~-------- 104 (218)
T PF07279_consen 48 AWSSGGAISTTIALAAAARQ------------TGGRHVCIVPDEQSLS-EYKKALGEAGLSDVV--EFVVGE-------- 104 (218)
T ss_pred EecCCCchHhHHHHHHHHHh------------cCCeEEEEcCChhhHH-HHHHHHhhccccccc--eEEecC--------
Confidence 33446677788888888865 5678999997754321 233334333322222 222210
Q ss_pred ccccChhcHHHHHHhCCCeEEEEeCCCCCHHHHH-HHHHHHHhcCCCcEEEEEee
Q 006816 182 TSLVLSEDISARFKSLGWNTIMVENIHDNLSSFK-EALMAAANETKKPTFIRVKK 235 (630)
Q Consensus 182 ~~~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~-~al~~a~~~~~~P~~i~~~t 235 (630)
..+++...++ |++...| |.+ .++.. +.|+.++- +++=.+|.++.
T Consensus 105 ----~~e~~~~~~~--~iDF~vV-Dc~--~~d~~~~vl~~~~~-~~~GaVVV~~N 149 (218)
T PF07279_consen 105 ----APEEVMPGLK--GIDFVVV-DCK--REDFAARVLRAAKL-SPRGAVVVCYN 149 (218)
T ss_pred ----CHHHHHhhcc--CCCEEEE-eCC--chhHHHHHHHHhcc-CCCceEEEEec
Confidence 0123333444 6666665 765 44555 77877765 33445665543
No 330
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=40.97 E-value=2.9e+02 Score=28.81 Aligned_cols=84 Identities=13% Similarity=0.107 Sum_probs=55.2
Q ss_pred CCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCcccccccccChhcHHHHHHhCC-CeEEEEeCCCCCHH
Q 006816 134 VDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGPTSLVLSEDISARFKSLG-WNTIMVENIHDNLS 212 (630)
Q Consensus 134 ~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~~~~~~~~~~~~~~~a~G-~~~~~v~dG~~d~~ 212 (630)
-.+.++.++|-|+=. --.-|+.+|.+.. .++++|-|..+.. ...+..+..| .++..| |=. |.+
T Consensus 36 v~g~~vLITGgg~Gl--Gr~ialefa~rg~---~~vl~Din~~~~~---------etv~~~~~~g~~~~y~c-dis-~~e 99 (300)
T KOG1201|consen 36 VSGEIVLITGGGSGL--GRLIALEFAKRGA---KLVLWDINKQGNE---------ETVKEIRKIGEAKAYTC-DIS-DRE 99 (300)
T ss_pred ccCCEEEEeCCCchH--HHHHHHHHHHhCC---eEEEEeccccchH---------HHHHHHHhcCceeEEEe-cCC-CHH
Confidence 356788888888765 2344566666544 6677777754332 3344455445 566777 766 999
Q ss_pred HHHHHHHHHHhcCCCcEEEEEe
Q 006816 213 SFKEALMAAANETKKPTFIRVK 234 (630)
Q Consensus 213 ~l~~al~~a~~~~~~P~~i~~~ 234 (630)
++++..++.++ .-||.-|.+.
T Consensus 100 ei~~~a~~Vk~-e~G~V~ILVN 120 (300)
T KOG1201|consen 100 EIYRLAKKVKK-EVGDVDILVN 120 (300)
T ss_pred HHHHHHHHHHH-hcCCceEEEe
Confidence 99999998887 4566666554
No 331
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=40.82 E-value=99 Score=33.43 Aligned_cols=87 Identities=13% Similarity=0.130 Sum_probs=55.2
Q ss_pred CceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCcccccccccChhcHHHHHHhCCCeEEEEeCCC----CC
Q 006816 135 DHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGPTSLVLSEDISARFKSLGWNTIMVENIH----DN 210 (630)
Q Consensus 135 ~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~~~~~~~~~~~~~~~a~G~~~~~v~dG~----~d 210 (630)
+..++.+.|-|.+. +||.-.--...=+ -++++.|.. +...+.++++.+|.++..+ +-. .|
T Consensus 55 ~~~~~ll~gsGt~a----mEAav~sl~~pgd-kVLv~~nG~----------FG~R~~~ia~~~g~~v~~~-~~~wg~~v~ 118 (383)
T COG0075 55 NGDVVLLSGSGTLA----MEAAVASLVEPGD-KVLVVVNGK----------FGERFAEIAERYGAEVVVL-EVEWGEAVD 118 (383)
T ss_pred CCcEEEEcCCcHHH----HHHHHHhccCCCC-eEEEEeCCh----------HHHHHHHHHHHhCCceEEE-eCCCCCCCC
Confidence 45788888888773 5544333322213 444445443 3567899999999999887 422 18
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEeeccc
Q 006816 211 LSSFKEALMAAANETKKPTFIRVKKMRE 238 (630)
Q Consensus 211 ~~~l~~al~~a~~~~~~P~~i~~~t~k~ 238 (630)
++++.++|++-.. -+--+++|+.|--|
T Consensus 119 p~~v~~~L~~~~~-~~~V~~vH~ETSTG 145 (383)
T COG0075 119 PEEVEEALDKDPD-IKAVAVVHNETSTG 145 (383)
T ss_pred HHHHHHHHhcCCC-ccEEEEEeccCccc
Confidence 9999999984332 33456777777543
No 332
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=39.39 E-value=1.4e+02 Score=28.45 Aligned_cols=80 Identities=16% Similarity=0.096 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEcCCCcccccCC---Cccccccc--------ccEEEecCCCCCCCcEEEEEeCchHHHH
Q 006816 461 NETAGSYRVAIANRDVPSVIALSRQKIAANLEG---TSADEVER--------GGYIVSDNSSENKPEIILIGTGTELSLC 529 (630)
Q Consensus 461 ~e~~~~l~~a~~~~~~P~~ir~~r~~~~~~~~~---~~~~~~~~--------G~~~~~~~~~~G~~dvtiva~G~~v~~a 529 (630)
+|++.||-+|+-. +|-+||.-.. .+ ..+.. .+.+.++. +....+. + - ..|.|++-.+.=..|
T Consensus 25 edaARlLAQA~vg-eG~IYi~G~~-Em-~~v~~~Al~g~E~l~~~k~l~~~~~~~~~lt--~-~-DRVllfs~~~~~~e~ 97 (172)
T PF10740_consen 25 EDAARLLAQAIVG-EGTIYIYGFG-EM-EAVEAEALYGAEPLPSAKRLSEDLENFDELT--E-T-DRVLLFSPFSTDEEA 97 (172)
T ss_dssp HHHHHHHHHHHHT-T--EEEEE-G-GG-GGGHHHHHCSTT--TTEEE--TT----------T-T--EEEEEES-S--HHH
T ss_pred HHHHHHHHHHHhc-CCEEEEEecC-hH-HHHHHHHHcCCCCCchhhcCccccccccccc--c-c-ceEEEEeCCCCCHHH
Confidence 6788999999987 8999996332 22 11110 01111111 1111122 1 2 579999999888899
Q ss_pred HHHHHHHHhcCCceEEEE
Q 006816 530 EGTAKTLRQEGRRVRVVS 547 (630)
Q Consensus 530 ~~aa~~L~~~gi~~~Vi~ 547 (630)
.+.++.|.++||.+-+|+
T Consensus 98 ~~~a~~L~~~gi~~v~Vs 115 (172)
T PF10740_consen 98 VALAKQLIEQGIPFVGVS 115 (172)
T ss_dssp HHHHHHHHHHT--EEEEE
T ss_pred HHHHHHHHHCCCCEEEEE
Confidence 999999999999998888
No 333
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=38.96 E-value=23 Score=30.89 Aligned_cols=35 Identities=34% Similarity=0.510 Sum_probs=23.6
Q ss_pred CcEEEEEeCchH-HHHHHHHHHHHhcCCceEEEEcc
Q 006816 515 PEIILIGTGTEL-SLCEGTAKTLRQEGRRVRVVSLV 549 (630)
Q Consensus 515 ~dvtiva~G~~v-~~a~~aa~~L~~~gi~~~Vi~~~ 549 (630)
.|+.||++|... ..--+..+.|+++||.+++.|-+
T Consensus 54 pe~liiGtG~~~~~~~~~~~~~l~~~GI~ve~m~T~ 89 (110)
T PF04430_consen 54 PEVLIIGTGKRQLFLPPELREYLRKKGIGVEVMDTP 89 (110)
T ss_dssp -SEEEEEETTS-SECTHHHHHHHHTTT-EEEEE-HH
T ss_pred CcEEEEccCCccccCCHHHHHHHHHcCCeEEEECHH
Confidence 899999999864 22335667788899998887643
No 334
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=37.47 E-value=1.2e+02 Score=33.60 Aligned_cols=116 Identities=17% Similarity=0.133 Sum_probs=63.6
Q ss_pred CCCCCCccccccchHHHHHHHHHHHh----cCCCCceEeee--hHHHHHhhHHHHHHhcccCCCeEEEEe-cCCCCCCCC
Q 006816 361 DSPWGRNIRYGVREHAMAGISNGVAL----HGGGLIPFAAT--FLIFSDYMKNSIRLSALSHAGVIYILT-HDSIGLGED 433 (630)
Q Consensus 361 ~~~p~R~~~~gIaE~~~vg~a~GlA~----~G~~~~pv~~~--~~~F~~~a~dqi~~~a~~~~pv~~v~~-~~g~~~g~~ 433 (630)
.+.|-|.+|.|- .+-+|+..|+|+ .- +-++|+++ -+.|--.+++ +-..+..++||+++.. ..|+ ||-|
T Consensus 417 ~~~Pr~rLDaGt--fgTMGVG~Gfalaaa~~~-P~~~V~~veGDsaFGfSaME-~ET~vR~~Lpvv~vV~NN~Gi-yg~d 491 (571)
T KOG1185|consen 417 PRGPRRRLDAGT--FGTMGVGLGFALAAALAA-PDRKVVCVEGDSAFGFSAME-LETFVRYKLPVVIVVGNNNGI-YGLD 491 (571)
T ss_pred CCCcccccCCcc--ccccccchhHHHHHHhhC-CCCeEEEEecCcccCcchhh-HHHHHHhcCCeEEEEecCCcc-cccC
Confidence 467889999875 334444444443 22 24555554 3455333322 1223567999888764 4444 3433
Q ss_pred --CCCCCC----hhhhHHhhcCCC-----------cEEEecCChHHHHHHHHHHHHcCCCcEEEE
Q 006816 434 --GPTHQP----VEQLAGLRAVPR-----------LLAFRPADGNETAGSYRVAIANRDVPSVIA 481 (630)
Q Consensus 434 --G~tHq~----~~d~a~l~~iP~-----------l~v~~P~d~~e~~~~l~~a~~~~~~P~~ir 481 (630)
|.+.-+ ..++....-.++ .+=+.=.+..|+..+++++.+..++|++|-
T Consensus 492 ~~~~~~I~e~~~~~~~p~~~l~~~~rY~~v~ka~G~kG~~v~t~~el~~~l~~a~q~~~~psvIN 556 (571)
T KOG1185|consen 492 DDGWKQISEQDPTLDLPPTALLANTRYDKVAKAFGGKGYFVSTVEELLAALQQACQDTDKPSVIN 556 (571)
T ss_pred cccHHHHhhcCcccCCCcccccccccHHHHHHHcCCCceeeCCHHHHHHHHHHHHhcCCCCeEEE
Confidence 222111 112222222232 233444589999999999999867899884
No 335
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=36.84 E-value=92 Score=32.74 Aligned_cols=70 Identities=19% Similarity=0.355 Sum_probs=41.5
Q ss_pred hHHHHHHhcccCCCeEEEEecCCCCCCCCCCCC-CChhhhHH-hh--cCCCcEEEecCChHHH---HH----HHHHHHHc
Q 006816 405 MKNSIRLSALSHAGVIYILTHDSIGLGEDGPTH-QPVEQLAG-LR--AVPRLLAFRPADGNET---AG----SYRVAIAN 473 (630)
Q Consensus 405 a~dqi~~~a~~~~pv~~v~~~~g~~~g~~G~tH-q~~~d~a~-l~--~iP~l~v~~P~d~~e~---~~----~l~~a~~~ 473 (630)
.|+.+.++++.++|+|||+-...+|.| .+| -+..+..+ .| -|||++| |..|+ +. +.++++..
T Consensus 204 ~fEa~NMA~LW~LP~IFvCENN~yGMG---Ts~~Rasa~teyykRG~yiPGl~V----dGmdvlaVr~a~KfA~~~~~~g 276 (394)
T KOG0225|consen 204 VFEAFNMAALWKLPVIFVCENNHYGMG---TSAERASASTEYYKRGDYIPGLKV----DGMDVLAVREATKFAKKYALEG 276 (394)
T ss_pred HHHHhhHHHHhCCCEEEEEccCCCccC---cchhhhhcChHHHhccCCCCceEE----CCcchhhHHHHHHHHHHHHhcC
Confidence 555566689999999999866655543 344 22233333 33 5899876 33333 23 33344444
Q ss_pred CCCcEEEEE
Q 006816 474 RDVPSVIAL 482 (630)
Q Consensus 474 ~~~P~~ir~ 482 (630)
++|+++-+
T Consensus 277 -~GPilmE~ 284 (394)
T KOG0225|consen 277 -KGPILMEM 284 (394)
T ss_pred -CCCEEEEE
Confidence 78998843
No 336
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=36.63 E-value=3.7e+02 Score=25.52 Aligned_cols=71 Identities=10% Similarity=-0.015 Sum_probs=46.4
Q ss_pred CceEEEEEcccccCch-hHHHHHHHhHHcCCCcEEEEEECCCCcccccccccChhcHHHHHHhCCCeEEEEeCCCCCHHH
Q 006816 135 DHRTYCIMSDGCAMEG-ISHEAAALAAHWKLNKLTLIYDDNHNTIDGPTSLVLSEDISARFKSLGWNTIMVENIHDNLSS 213 (630)
Q Consensus 135 ~~~v~~~~GDG~~~eG-~~~eal~~a~~~~L~~li~i~~~N~~~i~~~~~~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~ 213 (630)
.++++++++||+-.+. ...+....+...++...++=+. + . ..-+.+++++-|-+++.+ . |.++
T Consensus 107 ~~~iiil~sd~~~~~~~~~~~~~~~l~~~~I~v~~IgiG-~------~-----~~~L~~ia~~tgG~~~~~---~-~~~~ 170 (183)
T cd01453 107 SREVLIIFSSLSTCDPGNIYETIDKLKKENIRVSVIGLS-A------E-----MHICKEICKATNGTYKVI---L-DETH 170 (183)
T ss_pred ceEEEEEEcCCCcCChhhHHHHHHHHHHcCcEEEEEEec-h------H-----HHHHHHHHHHhCCeeEee---C-CHHH
Confidence 4668888999876533 2335566677777653332221 1 1 123677889999999998 5 7888
Q ss_pred HHHHHHHH
Q 006816 214 FKEALMAA 221 (630)
Q Consensus 214 l~~al~~a 221 (630)
|.+.+.++
T Consensus 171 l~~~~~~~ 178 (183)
T cd01453 171 LKELLLEH 178 (183)
T ss_pred HHHHHHhc
Confidence 88887764
No 337
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=35.22 E-value=67 Score=26.71 Aligned_cols=36 Identities=17% Similarity=0.252 Sum_probs=31.2
Q ss_pred CcEEEEEeCc----hHHHHHHHHHHHHhcCCceEEEEccc
Q 006816 515 PEIILIGTGT----ELSLCEGTAKTLRQEGRRVRVVSLVC 550 (630)
Q Consensus 515 ~dvtiva~G~----~v~~a~~aa~~L~~~gi~~~Vi~~~~ 550 (630)
.+|+|++.|+ ....+.+|.+.|++.|+..+.+|+..
T Consensus 8 ~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~ 47 (90)
T cd03028 8 NPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILE 47 (90)
T ss_pred CCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCC
Confidence 7899999983 67888899999999999999999753
No 338
>PRK13685 hypothetical protein; Provisional
Probab=35.05 E-value=4.5e+02 Score=27.56 Aligned_cols=85 Identities=15% Similarity=0.125 Sum_probs=52.7
Q ss_pred CceEEEEEcccccCchh-------HHHHHHHhHHcCCCcEEEEEECCCCcc--ccccc--ccChhcHHHHHHhCCCeEEE
Q 006816 135 DHRTYCIMSDGCAMEGI-------SHEAAALAAHWKLNKLTLIYDDNHNTI--DGPTS--LVLSEDISARFKSLGWNTIM 203 (630)
Q Consensus 135 ~~~v~~~~GDG~~~eG~-------~~eal~~a~~~~L~~li~i~~~N~~~i--~~~~~--~~~~~~~~~~~~a~G~~~~~ 203 (630)
..++++++.||.-+.|. ..++...+...+++..++=+-...-++ .+... ......+.++++.-|-.++.
T Consensus 193 ~~~~IILlTDG~~~~~~~~~~~~~~~~aa~~a~~~gi~i~~Ig~G~~~g~~~~~g~~~~~~~d~~~L~~iA~~tgG~~~~ 272 (326)
T PRK13685 193 PPARIVLMSDGKETVPTNPDNPRGAYTAARTAKDQGVPISTISFGTPYGSVEINGQRQPVPVDDESLKKIAQLSGGEFYT 272 (326)
T ss_pred CCCEEEEEcCCCCCCCCCCCCcccHHHHHHHHHHcCCeEEEEEECCCCCCcCcCCceeeecCCHHHHHHHHHhcCCEEEE
Confidence 34678899999877653 356778888888873333332211111 11110 11234577888888989999
Q ss_pred EeCCCCCHHHHHHHHHHHHh
Q 006816 204 VENIHDNLSSFKEALMAAAN 223 (630)
Q Consensus 204 v~dG~~d~~~l~~al~~a~~ 223 (630)
+ . |.+++.+++++..+
T Consensus 273 ~---~-~~~~L~~if~~I~~ 288 (326)
T PRK13685 273 A---A-SLEELRAVYATLQQ 288 (326)
T ss_pred c---C-CHHHHHHHHHHHHH
Confidence 8 4 77888888877643
No 339
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=33.80 E-value=71 Score=27.11 Aligned_cols=35 Identities=14% Similarity=0.270 Sum_probs=30.9
Q ss_pred CcEEEEEeC----chHHHHHHHHHHHHhcCCceEEEEcc
Q 006816 515 PEIILIGTG----TELSLCEGTAKTLRQEGRRVRVVSLV 549 (630)
Q Consensus 515 ~dvtiva~G----~~v~~a~~aa~~L~~~gi~~~Vi~~~ 549 (630)
++|+|.+.| +....+.+|.+.|++.|++.+.+|+.
T Consensus 12 ~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~ 50 (97)
T TIGR00365 12 NPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVL 50 (97)
T ss_pred CCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECC
Confidence 789999988 46788889999999999999999985
No 340
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=33.76 E-value=33 Score=29.98 Aligned_cols=35 Identities=43% Similarity=0.602 Sum_probs=25.8
Q ss_pred CcEEEEEeCchH-HHHHHHHHHHHhcCCceEEEEcc
Q 006816 515 PEIILIGTGTEL-SLCEGTAKTLRQEGRRVRVVSLV 549 (630)
Q Consensus 515 ~dvtiva~G~~v-~~a~~aa~~L~~~gi~~~Vi~~~ 549 (630)
.++.||++|... ..--+..+.|+++||.+++.|-.
T Consensus 53 peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T~ 88 (109)
T cd00248 53 PDILLIGTGAEIAFLPRALRAALRAAGIGVEVMSTG 88 (109)
T ss_pred CCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCcH
Confidence 789999999954 22334567788899999887643
No 341
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=33.64 E-value=2.2e+02 Score=31.24 Aligned_cols=92 Identities=17% Similarity=0.108 Sum_probs=51.0
Q ss_pred eEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCcccccccccChhcHHHHHHhCCCeEEEEeCCCCC------
Q 006816 137 RTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGPTSLVLSEDISARFKSLGWNTIMVENIHDN------ 210 (630)
Q Consensus 137 ~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~~~~~~~~~~~~~~~a~G~~~~~v~dG~~d------ 210 (630)
.+++..|=|.++ ..-++..|-..+.| +++|.=+-.....+. ......|..+.++.+---..++.+-. +
T Consensus 66 v~~~t~GpG~~N---~l~gl~~A~~~~~P-vl~i~g~~~~~~~~~-~~~q~~d~~~~~~~~tk~~~~v~~~~-~~~~~~~ 139 (432)
T TIGR00173 66 AVVCTSGTAVAN---LLPAVIEASYSGVP-LIVLTADRPPELRGC-GANQTIDQPGLFGSYVRWSLDLPLPE-ADEPLAY 139 (432)
T ss_pred EEEECCcchHhh---hhHHHHHhcccCCc-EEEEeCCCCHHHhCC-CCCcccchhhHHhhccceeeeCCCCC-ccccHHH
Confidence 444444677664 55688889999999 555542221111000 01112356667776643333442333 3
Q ss_pred -HHHHHHHHHHHHhcCCCcEEEEEe
Q 006816 211 -LSSFKEALMAAANETKKPTFIRVK 234 (630)
Q Consensus 211 -~~~l~~al~~a~~~~~~P~~i~~~ 234 (630)
...+.+|++.|.....||+.|.+.
T Consensus 140 ~~~~i~~A~~~a~~~~~GPV~l~iP 164 (432)
T TIGR00173 140 LRSTVDRAVAQAQGPPPGPVHINVP 164 (432)
T ss_pred HHHHHHHHHHHhhCCCCCCEEEeCC
Confidence 245777888776534589999874
No 342
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=32.98 E-value=36 Score=30.06 Aligned_cols=35 Identities=37% Similarity=0.532 Sum_probs=26.1
Q ss_pred CcEEEEEeCchH-HHHHHHHHHHHhcCCceEEEEcc
Q 006816 515 PEIILIGTGTEL-SLCEGTAKTLRQEGRRVRVVSLV 549 (630)
Q Consensus 515 ~dvtiva~G~~v-~~a~~aa~~L~~~gi~~~Vi~~~ 549 (630)
.++.||++|... ..--+..+.|+++||.+++.|-+
T Consensus 55 peiliiGtG~~~~~~~~~~~~~l~~~gi~vevm~T~ 90 (114)
T cd05125 55 PEILVIGTGRKSRPLSPELRKYFKKLGIAVEVVDTR 90 (114)
T ss_pred CCEEEEccCCCCCcCCHHHHHHHHHcCCEEEEECHH
Confidence 789999999954 33334567788899999887643
No 343
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=32.59 E-value=4e+02 Score=28.88 Aligned_cols=83 Identities=14% Similarity=0.037 Sum_probs=45.8
Q ss_pred cchHHHHHHHHHHHhcC-----------CCCceEeee-hHHHHH-hhHHHHHHhcccCC-CeEEEEecCCCCCCCCCCCC
Q 006816 372 VREHAMAGISNGVALHG-----------GGLIPFAAT-FLIFSD-YMKNSIRLSALSHA-GVIYILTHDSIGLGEDGPTH 437 (630)
Q Consensus 372 IaE~~~vg~a~GlA~~G-----------~~~~pv~~~-~~~F~~-~a~dqi~~~a~~~~-pv~~v~~~~g~~~g~~G~tH 437 (630)
-+=.+-+++|+|||+.. ...+.+|.+ -...-. .+|+.+..++..++ +++++. +.-....||+|-
T Consensus 118 GSLGqGLs~AvGmAla~r~l~a~~~~~~~~~rvyvllGDGEl~EG~vwEA~~~Ag~~kL~NLivIv--D~N~~qidG~t~ 195 (386)
T cd02017 118 VSMGLGPIQAIYQARFNRYLEDRGLKDTSDQKVWAFLGDGEMDEPESLGAIGLAAREKLDNLIFVV--NCNLQRLDGPVR 195 (386)
T ss_pred chHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcccccccHHHHHHHHHHHHhCCCCEEEEE--ECCCCccCCccc
Confidence 34444556777777632 012233322 333332 57888877766665 566665 433445567765
Q ss_pred C---ChhhhH-HhhcCCCcEEEec
Q 006816 438 Q---PVEQLA-GLRAVPRLLAFRP 457 (630)
Q Consensus 438 q---~~~d~a-~l~~iP~l~v~~P 457 (630)
- ..++++ -|+++ |+.|+.-
T Consensus 196 ~v~~~~e~l~~kf~Af-GW~vi~V 218 (386)
T cd02017 196 GNGKIIQELEGIFRGA-GWNVIKV 218 (386)
T ss_pred ccccCchhHHHHHHhc-CCEEEEE
Confidence 3 345544 35555 8888874
No 344
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=30.77 E-value=4.1e+02 Score=28.52 Aligned_cols=107 Identities=16% Similarity=0.209 Sum_probs=60.1
Q ss_pred hhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCcccccccccC
Q 006816 107 QGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGPTSLVL 186 (630)
Q Consensus 107 ~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~~~~~~ 186 (630)
.++++++|++++. .++..-+.=.+|. ...|++-+|+-..+|.++++.+.-+-+-.-++. ..
T Consensus 58 ~a~s~v~GA~~aG----------------ar~~TaTSg~Gl~--Lm~E~l~~a~~~~~P~Vi~~~~R~~ps~g~p~~-~d 118 (365)
T COG0674 58 GAISAVIGASYAG----------------ARAFTATSGQGLL--LMAEALGLAAGTETPLVIVVAQRPLPSTGLPIK-GD 118 (365)
T ss_pred HHHHHHHHHHhhC----------------cceEeecCCccHH--HHHHHHHHHHhccCCeEEEEeccCcCCCccccc-cc
Confidence 6788889998875 3455544444444 678999999999999554444432211111111 12
Q ss_pred hhcHHHHHHhCCCeEEEEeCCCCCHHH-HH---HHHHHHHhcCCCcEEEEEeeccc
Q 006816 187 SEDISARFKSLGWNTIMVENIHDNLSS-FK---EALMAAANETKKPTFIRVKKMRE 238 (630)
Q Consensus 187 ~~~~~~~~~a~G~~~~~v~dG~~d~~~-l~---~al~~a~~~~~~P~~i~~~t~k~ 238 (630)
..|+.....+ ||..+.. . |+++ .. .|++.|.+ ..-|+++-..-+..
T Consensus 119 q~D~~~~r~~-g~~~~~~-~---s~qEa~d~t~~Af~iAe~-~~~Pvi~~~D~~~~ 168 (365)
T COG0674 119 QSDLMAARDT-GFPILVS-A---SVQEAFDLTLLAFNIAEK-VLTPVIVLLDGFLA 168 (365)
T ss_pred HHHHHHHHcc-CceEEee-c---cHHHHHHHHHHHHHHHHH-hcCCEEEeeccchh
Confidence 2344332223 8988776 2 3333 22 34444554 46788776554444
No 345
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=30.31 E-value=47 Score=29.02 Aligned_cols=35 Identities=31% Similarity=0.384 Sum_probs=25.5
Q ss_pred CcEEEEEeCchH-HHHHHHHHHHHhcCCceEEEEcc
Q 006816 515 PEIILIGTGTEL-SLCEGTAKTLRQEGRRVRVVSLV 549 (630)
Q Consensus 515 ~dvtiva~G~~v-~~a~~aa~~L~~~gi~~~Vi~~~ 549 (630)
+++.||++|... ..--+..+.|+++||.+++.|-.
T Consensus 53 peiliiGTG~~~~~~~~~~~~~l~~~gi~vE~m~T~ 88 (109)
T cd05560 53 PEVILLGTGERQRFPPPALLAPLLARGIGVEVMDTQ 88 (109)
T ss_pred CCEEEEecCCCCCcCCHHHHHHHHHcCCeEEEECHH
Confidence 789999999854 22334556788899998887643
No 346
>PF06707 DUF1194: Protein of unknown function (DUF1194); InterPro: IPR010607 This family consists of several hypothetical Rhizobiales specific proteins of around 270 residues in length. The function of this family is unknown.
Probab=29.17 E-value=4.3e+02 Score=25.93 Aligned_cols=95 Identities=19% Similarity=0.179 Sum_probs=52.8
Q ss_pred hhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCch-hHH-HHHHHhHHcCCCcEEEEEECCCCcccccccc
Q 006816 107 QGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEG-ISH-EAAALAAHWKLNKLTLIYDDNHNTIDGPTSL 184 (630)
Q Consensus 107 ~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG-~~~-eal~~a~~~~L~~li~i~~~N~~~i~~~~~~ 184 (630)
++++.|++.+... |.+.++. -.++|+-+.|||--+.| ... .+-..+...++ ++ |++.|......
T Consensus 95 Taig~Al~~a~~l------l~~~~~~-~~RrVIDvSGDG~~N~G~~p~~~ard~~~~~Gi---tI----NgL~I~~~~~~ 160 (205)
T PF06707_consen 95 TAIGSALDFAAAL------LAQNPFE-CWRRVIDVSGDGPNNQGPRPVTSARDAAVAAGI---TI----NGLAILDDDPF 160 (205)
T ss_pred chHHHHHHHHHHH------HHhCCCC-CceEEEEECCCCCCCCCCCccHHHHHHHHHCCe---EE----eeeEecCCCCC
Confidence 5566666665543 1111111 36899999999999999 444 33344444442 11 44444332221
Q ss_pred cChhcHHHHHHhC-----CCeEEEEeCCCCCHHHHHHHHHH
Q 006816 185 VLSEDISARFKSL-----GWNTIMVENIHDNLSSFKEALMA 220 (630)
Q Consensus 185 ~~~~~~~~~~~a~-----G~~~~~v~dG~~d~~~l~~al~~ 220 (630)
. ..++..+|+.. |--+..+ . ++++..+|+++
T Consensus 161 ~-~~~L~~yy~~~VIgGpgAFV~~a---~-~~~df~~Airr 196 (205)
T PF06707_consen 161 G-GADLDAYYRRCVIGGPGAFVETA---R-GFEDFAEAIRR 196 (205)
T ss_pred c-cccHHHHHhhhcccCCCceEEEc---C-CHHHHHHHHHH
Confidence 1 12677777755 3334444 5 78888888864
No 347
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=28.78 E-value=80 Score=29.64 Aligned_cols=38 Identities=26% Similarity=0.188 Sum_probs=28.2
Q ss_pred EEEEeCc----hHHHHHHHHHHHHhcCCceEEEEcccccccC
Q 006816 518 ILIGTGT----ELSLCEGTAKTLRQEGRRVRVVSLVCWRLFD 555 (630)
Q Consensus 518 tiva~G~----~v~~a~~aa~~L~~~gi~~~Vi~~~~i~pld 555 (630)
|||.|++ .-..|...|..|++.|+.|++.|+..+.-++
T Consensus 3 ~LIlYstr~GqT~kIA~~iA~~L~e~g~qvdi~dl~~~~~~~ 44 (175)
T COG4635 3 TLILYSTRDGQTRKIAEYIASHLRESGIQVDIQDLHAVEEPA 44 (175)
T ss_pred eEEEEecCCCcHHHHHHHHHHHhhhcCCeeeeeehhhhhccC
Confidence 4555544 5567777788899999999999988876433
No 348
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=28.68 E-value=94 Score=25.68 Aligned_cols=57 Identities=18% Similarity=0.242 Sum_probs=37.2
Q ss_pred cEEEEEeCc---h-HHHHHHHHHHHHhcCCceEEEEcccccccCcccHHHHhccCCCCCeeEEEEec
Q 006816 516 EIILIGTGT---E-LSLCEGTAKTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLPSRVVKRVSVEA 578 (630)
Q Consensus 516 dvtiva~G~---~-v~~a~~aa~~L~~~gi~~~Vi~~~~i~pld~~~~~~~~~v~~~~~~~~v~vEe 578 (630)
+|.|+..|. . ...|.+.++.|.+.||.+.+-+ .-..+..+.-. ..+.+.+.++++-+
T Consensus 1 qv~Ii~~~~~~~~~~~~a~~l~~~L~~~gi~v~~d~--~~~~~~k~~~~----a~~~g~p~~iiiG~ 61 (94)
T PF03129_consen 1 QVVIIPVGKKDEEIIEYAQELANKLRKAGIRVELDD--SDKSLGKQIKY----ADKLGIPFIIIIGE 61 (94)
T ss_dssp SEEEEESSCSHHHHHHHHHHHHHHHHHTTSEEEEES--SSSTHHHHHHH----HHHTTESEEEEEEH
T ss_pred CEEEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEEC--CCCchhHHHHH----HhhcCCeEEEEECc
Confidence 578899998 4 4789999999999999988776 33344444222 11234455455544
No 349
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=28.52 E-value=79 Score=28.30 Aligned_cols=74 Identities=15% Similarity=0.149 Sum_probs=45.0
Q ss_pred EEEecCChHHHHHHHHHHHHcCCCcEEEEEcCCCcccccC-CCccccccc---ccEEEecCCCCCCCcEEEEEeCchHHH
Q 006816 453 LAFRPADGNETAGSYRVAIANRDVPSVIALSRQKIAANLE-GTSADEVER---GGYIVSDNSSENKPEIILIGTGTELSL 528 (630)
Q Consensus 453 ~v~~P~d~~e~~~~l~~a~~~~~~P~~ir~~r~~~~~~~~-~~~~~~~~~---G~~~~~~~~~~G~~dvtiva~G~~v~~ 528 (630)
.|+.|.+.+|++.++++|.++ +.|+.++-..... .... ....-.+.. -+..-.+ . . ...+.+..|.....
T Consensus 3 ~vv~P~s~~ev~~~v~~a~~~-~~~v~~~g~G~~~-~~~~~~~~~ivi~~~~l~~i~~id--~-~-~~~v~v~aG~~~~~ 76 (139)
T PF01565_consen 3 AVVRPKSVEEVQAIVKFANEN-GVPVRVRGGGHSW-TGQSSDEGGIVIDMSRLNKIIEID--P-E-NGTVTVGAGVTWGD 76 (139)
T ss_dssp EEEEESSHHHHHHHHHHHHHT-TSEEEEESSSTTS-SSTTSSTTEEEEECTTCGCEEEEE--T-T-TTEEEEETTSBHHH
T ss_pred EEEEeCCHHHHHHHHHHHHHc-CCcEEEEcCCCCc-ccccccCCcEEEeecccccccccc--c-c-ceeEEEeccccchh
Confidence 589999999999999999997 8899998655443 2110 011111111 1111122 2 2 56777788887776
Q ss_pred HHHH
Q 006816 529 CEGT 532 (630)
Q Consensus 529 a~~a 532 (630)
..+.
T Consensus 77 l~~~ 80 (139)
T PF01565_consen 77 LYEA 80 (139)
T ss_dssp HHHH
T ss_pred cccc
Confidence 5544
No 350
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=27.57 E-value=1.1e+02 Score=24.47 Aligned_cols=33 Identities=21% Similarity=0.293 Sum_probs=26.4
Q ss_pred CcEEEEEeCch-HHHHHHHHHHHHhcCCceEEEE
Q 006816 515 PEIILIGTGTE-LSLCEGTAKTLRQEGRRVRVVS 547 (630)
Q Consensus 515 ~dvtiva~G~~-v~~a~~aa~~L~~~gi~~~Vi~ 547 (630)
.+|.|++.+.. ...|++.++.|++.|+.+++..
T Consensus 2 ~~v~i~~~~~~~~~~a~~i~~~Lr~~g~~v~~~~ 35 (91)
T cd00859 2 VDVYVVPLGEGALSEALELAEQLRDAGIKAEIDY 35 (91)
T ss_pred CcEEEEEcChHHHHHHHHHHHHHHHCCCEEEEec
Confidence 46888888874 4789999999999999887744
No 351
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=26.42 E-value=1e+02 Score=29.00 Aligned_cols=44 Identities=20% Similarity=0.129 Sum_probs=30.8
Q ss_pred CcEEEEEeCchHHHHHHHHHHHHhcCCceEEEEcccccccCccc
Q 006816 515 PEIILIGTGTELSLCEGTAKTLRQEGRRVRVVSLVCWRLFDRQP 558 (630)
Q Consensus 515 ~dvtiva~G~~v~~a~~aa~~L~~~gi~~~Vi~~~~i~pld~~~ 558 (630)
.=++|++.|+.---++-+|..|.++|+++.|+-+...+.+..+.
T Consensus 27 ~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~ 70 (169)
T PF03853_consen 27 RVLILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDA 70 (169)
T ss_dssp EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHH
T ss_pred eEEEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHH
Confidence 34556667777788888999998899998886655555555444
No 352
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=25.38 E-value=4.9e+02 Score=29.97 Aligned_cols=98 Identities=21% Similarity=0.155 Sum_probs=56.1
Q ss_pred cchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhH---------HHH---HHHhHHcCCCcEEEEEE
Q 006816 105 LGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGIS---------HEA---AALAAHWKLNKLTLIYD 172 (630)
Q Consensus 105 lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~---------~ea---l~~a~~~~L~~li~i~~ 172 (630)
-|.+-+.+-|+..|.+.......+ ...++++++-||..+.|.. .++ ...+...+++ +++++
T Consensus 472 ~gGgTpL~~gL~~A~~~l~~~~~~-----~~~~~iVLlTDG~~n~~~~~~~~~~~~~~~~~~~a~~~~~~gi~--~~vId 544 (584)
T PRK13406 472 GGGGTPLAAGLDAAAALALQVRRK-----GMTPTVVLLTDGRANIARDGTAGRAQAEEDALAAARALRAAGLP--ALVID 544 (584)
T ss_pred CCCCChHHHHHHHHHHHHHHhccC-----CCceEEEEEeCCCCCCCccccccccchhhHHHHHHHHHHhcCCe--EEEEe
Confidence 345566666666665543311111 2357999999999886431 233 3334445554 33333
Q ss_pred CCCCcccccccccChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHH
Q 006816 173 DNHNTIDGPTSLVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMA 220 (630)
Q Consensus 173 ~N~~~i~~~~~~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~ 220 (630)
-... ......++++..|-+|+.+ +-- |-+.|.+++..
T Consensus 545 ~g~~---------~~~~~~~LA~~~gg~y~~l-~~~-~a~~~~~~v~~ 581 (584)
T PRK13406 545 TSPR---------PQPQARALAEAMGARYLPL-PRA-DAGRLSQAVRA 581 (584)
T ss_pred cCCC---------CcHHHHHHHHhcCCeEEEC-CCC-CHHHHHHHHHh
Confidence 2211 1223567888999999998 544 67777766654
No 353
>PF02861 Clp_N: Clp amino terminal domain; InterPro: IPR004176 This short domain is found in one or two copies at the amino terminus of ClpA and ClpB proteins from bacteria and eukaryotes. The function of these domains is uncertain but they may form a protein binding site []. The proteins are thought to be subunits of ATP-dependent proteases which act as chaperones to target the proteases to substrates.; GO: 0019538 protein metabolic process; PDB: 3FH2_A 3ZRJ_A 3ZRI_A 1QVR_C 3FES_C 2Y1R_F 3PXG_D 2Y1Q_A 3PXI_C 2K77_A ....
Probab=25.24 E-value=66 Score=23.37 Aligned_cols=26 Identities=15% Similarity=0.215 Sum_probs=22.3
Q ss_pred CCHHHHHHHcCCChHHHHHHHHHhhh
Q 006816 604 GAYLDTFKKYGFTIDNVTKVARSLLS 629 (630)
Q Consensus 604 g~~~~l~~~~gl~~~~I~~~i~~~l~ 629 (630)
+....+++++|+|.+.+.+++.+.+.
T Consensus 28 ~~~~~il~~~~id~~~l~~~i~~~lg 53 (53)
T PF02861_consen 28 SIAARILKKLGIDPEQLKAAIEKALG 53 (53)
T ss_dssp SHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhC
Confidence 34678999999999999999998763
No 354
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=25.16 E-value=4.1e+02 Score=27.83 Aligned_cols=84 Identities=20% Similarity=0.231 Sum_probs=54.5
Q ss_pred EEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCcccccccccChhcHHHHHHhCCCeEEEEeCCCCCHH---HHHHH
Q 006816 141 IMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGPTSLVLSEDISARFKSLGWNTIMVENIHDNLS---SFKEA 217 (630)
Q Consensus 141 ~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~~~~~~~~~~~~~~~a~G~~~~~v~dG~~d~~---~l~~a 217 (630)
++-=|+.|..........|++.+|. +++++++-- . .-..+.++ .+..-+|.++..+..|. |+. .....
T Consensus 67 lvT~GgiQSNh~r~tAavA~~lGl~-~v~ile~~~----~--~y~~ngn~-Ll~~l~G~~~~~~~~~~-d~~~~~~~~~~ 137 (323)
T COG2515 67 LVTYGGIQSNHVRQTAAVAAKLGLK-CVLILENIE----A--NYLLNGNL-LLSKLMGAEVRAVDAGT-DIGINASAEEL 137 (323)
T ss_pred EEEecccchhHHHHHHHHHHhcCCc-EEEEEeccc----c--ccccccch-hhhhhcCceEEEecCCC-ChhhchhhHHH
Confidence 3344788888888888999999998 888887643 0 00111222 24556899999985566 872 23333
Q ss_pred HHHHHhcCCCcEEEEE
Q 006816 218 LMAAANETKKPTFIRV 233 (630)
Q Consensus 218 l~~a~~~~~~P~~i~~ 233 (630)
.+..++..++|.+|..
T Consensus 138 ~e~~~~~g~kpyvIp~ 153 (323)
T COG2515 138 AEEVRKQGGKPYVIPE 153 (323)
T ss_pred HHHHHhcCCCCcEecc
Confidence 4455554788998875
No 355
>PRK08105 flavodoxin; Provisional
Probab=25.03 E-value=85 Score=28.97 Aligned_cols=35 Identities=20% Similarity=0.005 Sum_probs=23.9
Q ss_pred EEEeCchHHHHHHHHHH----HHhcCCceEEEEcccccc
Q 006816 519 LIGTGTELSLCEGTAKT----LRQEGRRVRVVSLVCWRL 553 (630)
Q Consensus 519 iva~G~~v~~a~~aa~~----L~~~gi~~~Vi~~~~i~p 553 (630)
.|-||++.-.+.+.|+. |.+.|+++.|+++..+.+
T Consensus 5 ~I~YgS~tGnte~~A~~l~~~l~~~g~~~~~~~~~~~~~ 43 (149)
T PRK08105 5 GIFVGTVYGNALLVAEEAEAILTAQGHEVTLFEDPELSD 43 (149)
T ss_pred EEEEEcCchHHHHHHHHHHHHHHhCCCceEEechhhCCc
Confidence 45577777666655554 455699999998876544
No 356
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=24.50 E-value=2.5e+02 Score=27.09 Aligned_cols=30 Identities=10% Similarity=-0.065 Sum_probs=22.5
Q ss_pred ceEEEEEccc-ccCchhHHHHHHHhHHcCCC
Q 006816 136 HRTYCIMSDG-CAMEGISHEAAALAAHWKLN 165 (630)
Q Consensus 136 ~~v~~~~GDG-~~~eG~~~eal~~a~~~~L~ 165 (630)
.++++|+|++ +..+|...+....+...++.
T Consensus 108 ~rivi~v~S~~~~d~~~i~~~~~~lkk~~I~ 138 (187)
T cd01452 108 QRIVAFVGSPIEEDEKDLVKLAKRLKKNNVS 138 (187)
T ss_pred ceEEEEEecCCcCCHHHHHHHHHHHHHcCCe
Confidence 3666666666 88888887888888888876
No 357
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=23.99 E-value=1e+02 Score=24.69 Aligned_cols=31 Identities=23% Similarity=0.388 Sum_probs=25.1
Q ss_pred EEEEEeCchHHHHHHHHHHHHhcCCceEEEEccc
Q 006816 517 IILIGTGTELSLCEGTAKTLRQEGRRVRVVSLVC 550 (630)
Q Consensus 517 vtiva~G~~v~~a~~aa~~L~~~gi~~~Vi~~~~ 550 (630)
++||+-|. .++|.|..|.+.|.++.+|....
T Consensus 2 vvViGgG~---ig~E~A~~l~~~g~~vtli~~~~ 32 (80)
T PF00070_consen 2 VVVIGGGF---IGIELAEALAELGKEVTLIERSD 32 (80)
T ss_dssp EEEESSSH---HHHHHHHHHHHTTSEEEEEESSS
T ss_pred EEEECcCH---HHHHHHHHHHHhCcEEEEEeccc
Confidence 67777774 67788888888999999998665
No 358
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=23.98 E-value=3.8e+02 Score=30.37 Aligned_cols=149 Identities=18% Similarity=0.080 Sum_probs=97.0
Q ss_pred HHHHHHHHHhCCCeEEEecCCCCCcccccccccCcCCCCCCCCCccccccchHHHHHHHHHHHhcCCCCceEee--ehHH
Q 006816 323 EKCLNQLAKVLPGLIGGSADLASSNKAYLLGYHDFSQPDSPWGRNIRYGVREHAMAGISNGVALHGGGLIPFAA--TFLI 400 (630)
Q Consensus 323 ~~~L~~l~~~~~~iv~~~aD~~~s~~~~~~~~~~f~~~~~~p~R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~--~~~~ 400 (630)
.-.+.+|.+..=+=+++++--- |+-..+ .+ ..+++=-..+=|-|-.+.=+|.|+|..- .+||+- |-.+
T Consensus 12 ~v~~eeL~r~GV~~vvicPGSR-STPLal----a~---~~~~~i~~hv~~DERsagFfALGlAKas--~rPVavi~TSGT 81 (566)
T COG1165 12 RVFLEELARLGVRDVVICPGSR-STPLAL----AA---AAHDAITVHVHIDERSAGFFALGLAKAS--KRPVAVICTSGT 81 (566)
T ss_pred HHHHHHHHHcCCcEEEECCCCC-CcHHHH----HH---HhcCCeEEEEecccchHHHHHHhhhhhc--CCCEEEEEcCcc
Confidence 3344445544444466665432 221111 13 2445444578899999999999999988 888874 4455
Q ss_pred HHHhhHHHHHHhcccCCCeEEEEecCCCC-CCCCCCCCCChhhhHHhhcCCCcEEE--ecCChHHHHHHHHHHH----H-
Q 006816 401 FSDYMKNSIRLSALSHAGVIYILTHDSIG-LGEDGPTHQPVEQLAGLRAVPRLLAF--RPADGNETAGSYRVAI----A- 472 (630)
Q Consensus 401 F~~~a~dqi~~~a~~~~pv~~v~~~~g~~-~g~~G~tHq~~~d~a~l~~iP~l~v~--~P~d~~e~~~~l~~a~----~- 472 (630)
-....|..|--+.+.+.|.++. |-|+-- .-.=| .-|.+++..+|.+.|+..+= .|.+..++.+.+++.. +
T Consensus 82 A~ANl~PAViEA~~srvpLIVL-TADRP~EL~~~G-AnQaI~Q~~lfgs~v~~~~~L~~P~~~~~~~~~~~~~~~~~~~~ 159 (566)
T COG1165 82 AVANLYPAVIEANLSRVPLIVL-TADRPPELRGCG-ANQAIDQTGLFGSYVRASIDLPLPEDDIEALWYLRTIASAAAQQ 159 (566)
T ss_pred hhhhccHHHHhhhhcCCceEEE-eCCCCHHHhcCC-CchhhhhhhhhcccchhhccCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 5556788888889999999886 677654 22123 35789999999999985544 5777777766665432 2
Q ss_pred ---cCCCcEEEEEc
Q 006816 473 ---NRDVPSVIALS 483 (630)
Q Consensus 473 ---~~~~P~~ir~~ 483 (630)
-..||+-|=+|
T Consensus 160 a~~~~~GpVHiN~P 173 (566)
T COG1165 160 ARTPHAGPVHINVP 173 (566)
T ss_pred ccCCCCCceEecCC
Confidence 13578888665
No 359
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=23.96 E-value=1.2e+02 Score=24.82 Aligned_cols=58 Identities=16% Similarity=0.075 Sum_probs=36.7
Q ss_pred CcEEEEEeCc----hHHHHHHHHHHHHhcCCceEEEEcccccccCcccHHHHhccCCCCCeeEEEEec
Q 006816 515 PEIILIGTGT----ELSLCEGTAKTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLPSRVVKRVSVEA 578 (630)
Q Consensus 515 ~dvtiva~G~----~v~~a~~aa~~L~~~gi~~~Vi~~~~i~pld~~~~~~~~~v~~~~~~~~v~vEe 578 (630)
-+++|+..+. ....|++.+..|++.|+.+++ |.+. +.+..+... ..+.+.+.++++-+
T Consensus 2 ~qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~-d~~~-~~l~k~i~~----a~~~g~~~~iiiG~ 63 (94)
T cd00861 2 FDVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLL-DDRN-ERPGVKFAD----ADLIGIPYRIVVGK 63 (94)
T ss_pred eEEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEE-ECCC-CCcccchhH----HHhcCCCEEEEECC
Confidence 4678888775 457899999999999999976 5443 355554322 12234454455543
No 360
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=22.66 E-value=5.9e+02 Score=27.87 Aligned_cols=51 Identities=20% Similarity=0.151 Sum_probs=34.1
Q ss_pred CCCCChhhhH------HhhcCCC-cEEEecCChHHHHHHHHHHHHcCCCcEEEEEcCCCc
Q 006816 435 PTHQPVEQLA------GLRAVPR-LLAFRPADGNETAGSYRVAIANRDVPSVIALSRQKI 487 (630)
Q Consensus 435 ~tHq~~~d~a------~l~~iP~-l~v~~P~d~~e~~~~l~~a~~~~~~P~~ir~~r~~~ 487 (630)
.||.+-|.+. +....|| +.|++|..++-.+..-+.+-+ .+=.+.+-+++..
T Consensus 238 STH~GEeei~l~~~~~l~~~~~~~llIlVPRHpERf~~v~~l~~~--~gl~~~~rS~~~~ 295 (419)
T COG1519 238 STHEGEEEIILDAHQALKKQFPNLLLILVPRHPERFKAVENLLKR--KGLSVTRRSQGDP 295 (419)
T ss_pred cCCCchHHHHHHHHHHHHhhCCCceEEEecCChhhHHHHHHHHHH--cCCeEEeecCCCC
Confidence 3566555532 2345677 588999999999976666555 4666777677644
No 361
>PF12500 TRSP: TRSP domain C terminus to PRTase_2 ; InterPro: IPR022537 This domain is found in bacteria, and is typically between 174 and 217 amino acids in length. There is a conserved TRSP sequence motif.
Probab=22.38 E-value=1.3e+02 Score=28.12 Aligned_cols=32 Identities=31% Similarity=0.408 Sum_probs=28.0
Q ss_pred CCCcEEEEEeCchHHHHHHHHHHHHhcCCceEE
Q 006816 513 NKPEIILIGTGTELSLCEGTAKTLRQEGRRVRV 545 (630)
Q Consensus 513 G~~dvtiva~G~~v~~a~~aa~~L~~~gi~~~V 545 (630)
| .++.++++|-.+...+..|+.|++.|.+|.+
T Consensus 57 ~-~~vLVLGTgEfMy~Pl~lA~~Le~~g~~V~~ 88 (155)
T PF12500_consen 57 G-ERVLVLGTGEFMYLPLLLAEELEQAGADVRY 88 (155)
T ss_pred C-CcEEEEccchHHHHHHHHHHHHHhcCCceEE
Confidence 5 7899999999999999999999998865544
No 362
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=21.80 E-value=1.4e+02 Score=24.26 Aligned_cols=59 Identities=15% Similarity=0.053 Sum_probs=36.6
Q ss_pred CcEEEEEeCc----hHHHHHHHHHHHHhcCCceEEEEcccccccCcccHHHHhccCCCCCeeEEEEecC
Q 006816 515 PEIILIGTGT----ELSLCEGTAKTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLPSRVVKRVSVEAG 579 (630)
Q Consensus 515 ~dvtiva~G~----~v~~a~~aa~~L~~~gi~~~Vi~~~~i~pld~~~~~~~~~v~~~~~~~~v~vEe~ 579 (630)
.++.|+..+. ....|++.+..|++.|+.+++-+ .. +.+..+... ..+.+.+.++++.+.
T Consensus 2 ~~v~ii~~~~~~~~~~~~a~~~~~~Lr~~g~~v~~~~-~~-~~~~k~~~~----a~~~g~~~~iiig~~ 64 (94)
T cd00738 2 IDVAIVPLTDPRVEAREYAQKLLNALLANGIRVLYDD-RE-RKIGKKFRE----ADLRGVPFAVVVGED 64 (94)
T ss_pred eEEEEEECCCCcHHHHHHHHHHHHHHHHCCCEEEecC-CC-cCHhHHHHH----HHhCCCCEEEEECCC
Confidence 4678888775 45889999999999999887643 22 344444221 122343554666543
No 363
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=20.71 E-value=3.4e+02 Score=21.07 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHhcCCceEEEEccc
Q 006816 525 ELSLCEGTAKTLRQEGRRVRVVSLVC 550 (630)
Q Consensus 525 ~v~~a~~aa~~L~~~gi~~~Vi~~~~ 550 (630)
....+.+|.+.|++.|+..+.+|+..
T Consensus 8 ~Cp~C~~ak~~L~~~~i~~~~~di~~ 33 (72)
T TIGR02194 8 NCVQCKMTKKALEEHGIAFEEINIDE 33 (72)
T ss_pred CCHHHHHHHHHHHHCCCceEEEECCC
Confidence 34677888888999999999999975
No 364
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=20.45 E-value=8.7e+02 Score=24.76 Aligned_cols=76 Identities=18% Similarity=0.133 Sum_probs=44.9
Q ss_pred CceEEEEEcccccCc----hhHHHHHHHhHHcCCCcE-EEEEECCCCcccccccccChhcHHHHHHhCCCeEEEEeCCCC
Q 006816 135 DHRTYCIMSDGCAME----GISHEAAALAAHWKLNKL-TLIYDDNHNTIDGPTSLVLSEDISARFKSLGWNTIMVENIHD 209 (630)
Q Consensus 135 ~~~v~~~~GDG~~~e----G~~~eal~~a~~~~L~~l-i~i~~~N~~~i~~~~~~~~~~~~~~~~~a~G~~~~~v~dG~~ 209 (630)
...+++++-||=.+. |.-.|++..|....+-.. ++|+|--. ......-...++..+|.+++.+ |..
T Consensus 177 ~~~~~vviTDGr~n~~~~~~~~~e~~~~a~~~~~~g~~~lvid~e~-------~~~~~g~~~~iA~~~Gg~~~~L-~~l- 247 (261)
T COG1240 177 RRPVMVVITDGRANVPIPLGPKAETLEAASKLRLRGIQLLVIDTEG-------SEVRLGLAEEIARASGGEYYHL-DDL- 247 (261)
T ss_pred cceEEEEEeCCccCCCCCCchHHHHHHHHHHHhhcCCcEEEEecCC-------ccccccHHHHHHHHhCCeEEec-ccc-
Confidence 578999999997664 334667777666554433 33333221 1111112346778899999998 655
Q ss_pred CHHHHHHHHH
Q 006816 210 NLSSFKEALM 219 (630)
Q Consensus 210 d~~~l~~al~ 219 (630)
.-..+..+.+
T Consensus 248 ~~~~i~~~~r 257 (261)
T COG1240 248 SDDSIVSAVR 257 (261)
T ss_pred cchHHHHHHH
Confidence 4455555554
Done!