Query 006816
Match_columns 630
No_of_seqs 348 out of 2619
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 09:44:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006816.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006816hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rim_A Transketolase, TK; TPP, 100.0 2E-126 5E-131 1079.2 57.1 617 2-629 33-699 (700)
2 3m49_A Transketolase; alpha-be 100.0 1E-123 5E-128 1056.6 57.7 619 2-628 40-690 (690)
3 3uk1_A Transketolase; structur 100.0 2E-124 8E-129 1064.3 51.2 614 2-629 55-711 (711)
4 3kom_A Transketolase; rossmann 100.0 3E-123 1E-127 1052.0 56.6 613 2-628 16-663 (663)
5 3l84_A Transketolase; TKT, str 100.0 1E-118 5E-123 1008.0 57.6 585 2-626 16-631 (632)
6 1r9j_A Transketolase; domains, 100.0 3E-118 1E-122 1017.9 58.9 610 2-629 16-656 (673)
7 1itz_A Transketolase; calvin c 100.0 1E-117 5E-122 1013.7 61.7 619 2-626 26-674 (675)
8 2r8o_A Transketolase 1, TK 1; 100.0 9E-118 3E-122 1015.0 54.1 617 2-629 14-664 (669)
9 1gpu_A Transketolase; transfer 100.0 5E-117 2E-121 1009.5 59.7 612 2-629 18-665 (680)
10 2e6k_A Transketolase; structur 100.0 2E-116 7E-121 1001.5 57.7 607 2-628 18-651 (651)
11 3mos_A Transketolase, TK; thia 100.0 1E-106 3E-111 914.4 44.0 574 2-625 23-615 (616)
12 2qtc_A Pyruvate dehydrogenase 100.0 5.5E-93 1.9E-97 821.8 52.3 611 2-629 88-857 (886)
13 2o1x_A 1-deoxy-D-xylulose-5-ph 100.0 1.8E-91 6.3E-96 795.4 39.1 526 2-629 40-623 (629)
14 2o1s_A 1-deoxy-D-xylulose-5-ph 100.0 1.3E-90 4.4E-95 788.0 44.1 528 2-629 38-620 (621)
15 3ahc_A Phosphoketolase, xylulo 100.0 5E-83 1.7E-87 724.3 41.6 584 1-628 71-785 (845)
16 2jgd_A 2-oxoglutarate dehydrog 100.0 2.4E-57 8.2E-62 526.2 41.7 497 100-625 318-930 (933)
17 2yic_A 2-oxoglutarate decarbox 100.0 6.7E-58 2.3E-62 528.2 33.5 487 100-606 242-852 (868)
18 2xt6_A 2-oxoglutarate decarbox 100.0 1.7E-56 5.8E-61 528.5 34.3 488 100-606 487-1097(1113)
19 2bfd_B 2-oxoisovalerate dehydr 100.0 7.1E-52 2.4E-56 436.8 22.4 292 314-629 19-341 (342)
20 2ozl_B PDHE1-B, pyruvate dehyd 100.0 3E-51 1E-55 431.3 22.7 297 312-629 11-340 (341)
21 1w85_B Pyruvate dehydrogenase 100.0 5.5E-51 1.9E-55 427.7 23.7 293 316-629 3-323 (324)
22 1umd_B E1-beta, 2-OXO acid deh 100.0 1.7E-50 5.9E-55 424.1 24.0 293 315-629 3-323 (324)
23 1qs0_B 2-oxoisovalerate dehydr 100.0 6E-50 2E-54 422.4 22.5 289 315-629 4-337 (338)
24 1ik6_A Pyruvate dehydrogenase; 100.0 2.1E-50 7.1E-55 428.6 18.5 291 315-629 50-368 (369)
25 1umd_A E1-alpha, 2-OXO acid de 100.0 1.6E-31 5.3E-36 284.1 20.4 231 3-261 52-294 (367)
26 1w85_A Pyruvate dehydrogenase 99.9 1.1E-26 3.6E-31 246.1 16.8 213 11-261 71-293 (368)
27 2bfd_A 2-oxoisovalerate dehydr 99.9 2.9E-26 9.8E-31 245.4 17.0 195 45-261 106-312 (400)
28 1qs0_A 2-oxoisovalerate dehydr 99.9 1.2E-24 4.2E-29 232.6 20.9 151 96-260 174-331 (407)
29 2ozl_A PDHE1-A type I, pyruvat 99.9 6E-24 2.1E-28 224.3 23.8 212 13-260 64-287 (365)
30 1yd7_A 2-keto acid:ferredoxin 99.8 5.4E-19 1.9E-23 189.4 6.8 247 363-629 63-395 (395)
31 4feg_A Pyruvate oxidase; carba 99.6 1.4E-15 4.9E-20 172.1 13.9 118 101-239 418-548 (603)
32 1v5e_A Pyruvate oxidase; oxido 99.6 9.8E-16 3.4E-20 173.0 12.0 118 101-239 411-541 (590)
33 1t9b_A Acetolactate synthase, 99.6 8.2E-16 2.8E-20 175.8 11.0 118 101-239 511-639 (677)
34 1ozh_A ALS, acetolactate synth 99.6 6.8E-16 2.3E-20 173.6 9.1 118 101-239 418-545 (566)
35 2iht_A Carboxyethylarginine sy 99.6 8.2E-16 2.8E-20 173.2 9.6 116 101-237 434-561 (573)
36 1ybh_A Acetolactate synthase, 99.6 1E-15 3.4E-20 173.1 10.4 118 101-239 424-560 (590)
37 2uz1_A Benzaldehyde lyase; thi 99.6 1.5E-15 5.2E-20 170.7 11.5 119 101-238 417-547 (563)
38 2pgn_A Cyclohexane-1,2-dione h 99.6 8E-16 2.8E-20 173.8 7.4 121 102-244 423-553 (589)
39 2vbi_A Pyruvate decarboxylase; 99.6 1.2E-15 4.2E-20 171.5 8.6 118 101-239 407-535 (566)
40 2wvg_A PDC, pyruvate decarboxy 99.6 2.5E-15 8.4E-20 169.2 10.7 118 101-239 411-543 (568)
41 1q6z_A BFD, BFDC, benzoylforma 99.6 2E-15 6.8E-20 168.4 9.7 115 103-238 401-526 (528)
42 2vbf_A Branched-chain alpha-ke 99.6 2.2E-15 7.6E-20 169.6 9.5 118 101-239 423-553 (570)
43 3eya_A Pyruvate dehydrogenase 99.6 3.9E-15 1.3E-19 166.8 11.0 118 101-239 404-531 (549)
44 1ovm_A Indole-3-pyruvate decar 99.6 1.7E-15 5.8E-20 169.9 8.0 118 101-239 406-534 (552)
45 2nxw_A Phenyl-3-pyruvate decar 99.6 1.7E-15 5.9E-20 170.2 7.9 118 101-239 420-544 (565)
46 2vk8_A Pyruvate decarboxylase 99.6 2.5E-15 8.5E-20 168.9 9.1 124 100-239 410-544 (563)
47 2pan_A Glyoxylate carboligase; 99.6 2.6E-15 9E-20 170.5 9.1 119 101-239 440-582 (616)
48 2c31_A Oxalyl-COA decarboxylas 99.5 5E-14 1.7E-18 158.5 12.0 117 101-239 424-549 (568)
49 2x7j_A 2-succinyl-5-enolpyruvy 99.5 1.9E-14 6.6E-19 163.0 6.9 116 102-239 454-582 (604)
50 2q28_A Oxalyl-COA decarboxylas 99.5 6.2E-14 2.1E-18 157.6 9.7 117 101-239 419-546 (564)
51 3hww_A 2-succinyl-5-enolpyruvy 99.4 1.3E-13 4.4E-18 154.6 10.1 116 101-239 415-541 (556)
52 3lq1_A 2-succinyl-5-enolpyruvy 99.4 2.5E-13 8.6E-18 153.0 8.1 115 102-239 433-562 (578)
53 2c42_A Pyruvate-ferredoxin oxi 99.4 2.1E-11 7.3E-16 146.5 23.3 207 365-584 54-334 (1231)
54 3ju3_A Probable 2-oxoacid ferr 99.1 2E-10 6.9E-15 101.4 7.4 101 513-629 13-117 (118)
55 2c42_A Pyruvate-ferredoxin oxi 98.8 8E-09 2.7E-13 124.3 12.0 104 135-242 953-1075(1231)
56 1v5e_A Pyruvate oxidase; oxido 94.6 0.096 3.3E-06 58.5 9.9 115 366-486 45-165 (590)
57 1ybh_A Acetolactate synthase, 92.0 0.47 1.6E-05 52.8 10.1 115 366-485 52-172 (590)
58 1ozh_A ALS, acetolactate synth 91.7 0.42 1.4E-05 53.0 9.2 115 366-485 50-170 (566)
59 2pgn_A Cyclohexane-1,2-dione h 91.6 0.48 1.6E-05 52.8 9.4 115 366-485 45-165 (589)
60 2iht_A Carboxyethylarginine sy 91.5 0.47 1.6E-05 52.6 9.2 116 365-485 49-171 (573)
61 1t9b_A Acetolactate synthase, 91.3 0.7 2.4E-05 52.4 10.5 114 366-484 122-241 (677)
62 2uz1_A Benzaldehyde lyase; thi 91.3 0.63 2.1E-05 51.5 10.0 116 365-485 42-164 (563)
63 1q6z_A BFD, BFDC, benzoylforma 90.7 0.74 2.5E-05 50.4 9.8 117 366-486 40-162 (528)
64 2ozl_B PDHE1-B, pyruvate dehyd 90.4 0.89 3.1E-05 46.9 9.5 101 107-234 73-184 (341)
65 2pan_A Glyoxylate carboligase; 90.4 1.1 3.8E-05 50.1 11.0 114 366-485 67-188 (616)
66 2wvg_A PDC, pyruvate decarboxy 89.9 1.5 5.3E-05 48.4 11.5 117 366-486 43-170 (568)
67 2x7j_A 2-succinyl-5-enolpyruvy 89.8 0.66 2.3E-05 51.8 8.5 116 366-486 71-199 (604)
68 3hww_A 2-succinyl-5-enolpyruvy 89.4 0.89 3.1E-05 50.2 9.1 116 366-485 48-171 (556)
69 2nxw_A Phenyl-3-pyruvate decar 88.9 1.8 6.3E-05 47.7 11.2 119 364-485 58-186 (565)
70 3eya_A Pyruvate dehydrogenase 88.8 1.6 5.3E-05 48.1 10.5 114 366-485 43-162 (549)
71 1umd_B E1-beta, 2-OXO acid deh 88.7 2 6.9E-05 43.8 10.6 100 107-233 62-172 (324)
72 4feg_A Pyruvate oxidase; carba 88.7 1.8 6.2E-05 48.2 11.0 115 366-486 52-172 (603)
73 2vbi_A Pyruvate decarboxylase; 88.5 2.1 7.2E-05 47.2 11.3 116 366-486 43-170 (566)
74 1w85_B Pyruvate dehydrogenase 88.3 1.2 4.2E-05 45.5 8.6 101 107-234 61-172 (324)
75 3lq1_A 2-succinyl-5-enolpyruvy 87.9 1.2 4E-05 49.4 8.8 116 366-485 51-178 (578)
76 3mos_A Transketolase, TK; thia 87.4 2.9 0.0001 46.6 11.6 101 108-233 367-470 (616)
77 2vbf_A Branched-chain alpha-ke 87.1 1.6 5.5E-05 48.2 9.3 115 366-485 65-190 (570)
78 2vk8_A Pyruvate decarboxylase 86.7 2.6 8.8E-05 46.5 10.7 116 366-486 44-171 (563)
79 2c31_A Oxalyl-COA decarboxylas 86.4 1.6 5.5E-05 48.2 8.8 117 365-485 48-171 (568)
80 2q28_A Oxalyl-COA decarboxylas 86.3 1.7 5.8E-05 48.0 8.9 115 366-485 47-169 (564)
81 1ik6_A Pyruvate dehydrogenase; 85.1 2.2 7.5E-05 44.5 8.5 101 107-234 109-220 (369)
82 1qs0_B 2-oxoisovalerate dehydr 84.2 2.2 7.7E-05 43.7 8.0 101 107-234 63-174 (338)
83 3kom_A Transketolase; rossmann 83.5 6.5 0.00022 44.2 12.0 114 96-233 402-519 (663)
84 3l84_A Transketolase; TKT, str 83.5 6 0.0002 44.2 11.6 113 96-233 381-497 (632)
85 1ovm_A Indole-3-pyruvate decar 82.3 4.2 0.00014 44.6 9.8 116 366-485 45-170 (552)
86 2o1s_A 1-deoxy-D-xylulose-5-ph 82.1 3.5 0.00012 46.0 9.2 101 108-233 373-476 (621)
87 2e6k_A Transketolase; structur 81.9 5.7 0.00019 44.6 10.8 114 96-233 396-513 (651)
88 2r8o_A Transketolase 1, TK 1; 81.5 5.2 0.00018 45.1 10.3 102 108-233 414-518 (669)
89 1gpu_A Transketolase; transfer 81.5 3.9 0.00013 46.2 9.3 87 137-233 437-526 (680)
90 2bfd_B 2-oxoisovalerate dehydr 80.7 3.8 0.00013 42.1 8.2 101 107-234 78-190 (342)
91 3m49_A Transketolase; alpha-be 79.4 11 0.00036 42.7 11.9 74 153-233 467-543 (690)
92 1r9j_A Transketolase; domains, 79.2 7.6 0.00026 43.8 10.6 88 136-233 428-518 (673)
93 3uk1_A Transketolase; structur 77.9 11 0.00039 42.6 11.5 110 99-233 450-563 (711)
94 2bfd_A 2-oxoisovalerate dehydr 77.9 5.8 0.0002 41.7 8.6 103 378-482 168-283 (400)
95 1w85_A Pyruvate dehydrogenase 77.5 7.5 0.00026 40.3 9.3 103 377-482 147-263 (368)
96 1itz_A Transketolase; calvin c 76.7 8.3 0.00028 43.5 10.0 88 136-233 441-531 (675)
97 1yd7_A 2-keto acid:ferredoxin 76.4 2.5 8.5E-05 44.5 5.3 107 107-236 75-188 (395)
98 2o1x_A 1-deoxy-D-xylulose-5-ph 74.1 6.7 0.00023 43.9 8.3 101 108-234 376-479 (629)
99 3rim_A Transketolase, TK; TPP, 69.9 17 0.00058 41.0 10.3 74 153-233 472-550 (700)
100 1umd_A E1-alpha, 2-OXO acid de 65.0 9.3 0.00032 39.6 6.5 110 369-482 142-265 (367)
101 1qs0_A 2-oxoisovalerate dehydr 63.3 16 0.00054 38.4 7.9 101 379-482 188-303 (407)
102 2ozl_A PDHE1-A type I, pyruvat 59.0 16 0.00054 37.8 6.9 103 378-482 146-259 (365)
103 2yic_A 2-oxoglutarate decarbox 56.4 30 0.001 40.1 9.2 105 108-232 596-708 (868)
104 2jgd_A 2-oxoglutarate dehydrog 51.7 34 0.0012 39.9 8.7 103 108-232 664-776 (933)
105 2xt6_A 2-oxoglutarate decarbox 45.8 52 0.0018 39.2 9.2 105 108-232 841-953 (1113)
106 3ibs_A Conserved hypothetical 43.0 1.1E+02 0.0039 27.9 9.7 86 135-221 111-212 (218)
107 2qtc_A Pyruvate dehydrogenase 39.6 1.2E+02 0.0042 35.0 10.9 86 368-456 189-291 (886)
108 3kkj_A Amine oxidase, flavin-c 38.8 21 0.00073 33.1 3.8 31 515-548 3-33 (336)
109 2l69_A Rossmann 2X3 fold prote 37.9 86 0.0029 25.2 6.4 71 135-222 51-121 (134)
110 2fvt_A Conserved hypothetical 37.4 14 0.00047 32.5 1.9 35 515-549 68-103 (135)
111 2fi9_A Outer membrane protein; 37.0 14 0.00046 32.2 1.8 34 515-548 69-103 (128)
112 2ab1_A Hypothetical protein; H 35.2 18 0.00063 31.1 2.3 34 515-548 62-97 (122)
113 2gm2_A Conserved hypothetical 33.6 17 0.00059 31.7 1.9 34 515-548 65-99 (132)
114 3ipz_A Monothiol glutaredoxin- 29.7 60 0.0021 26.7 4.7 36 515-550 18-57 (109)
115 2lqo_A Putative glutaredoxin R 28.8 82 0.0028 25.2 5.2 35 515-550 4-38 (92)
116 3cpk_A Uncharacterized protein 27.7 25 0.00087 31.3 2.0 34 515-548 89-123 (150)
117 1wik_A Thioredoxin-like protei 26.9 49 0.0017 27.1 3.6 36 515-550 15-54 (109)
118 2wci_A Glutaredoxin-4; redox-a 26.8 64 0.0022 28.0 4.4 36 515-550 35-74 (135)
119 3ahc_A Phosphoketolase, xylulo 26.0 4.2E+02 0.014 30.3 12.1 82 145-232 522-622 (845)
120 3zyw_A Glutaredoxin-3; metal b 25.1 81 0.0028 26.1 4.7 36 515-550 16-55 (111)
121 1xmp_A PURE, phosphoribosylami 23.9 2.1E+02 0.0072 25.9 7.3 57 515-572 12-69 (170)
122 5nul_A Flavodoxin; electron tr 23.6 60 0.002 27.6 3.7 32 522-553 9-40 (138)
123 2dko_A Caspase-3; low barrier 23.5 2.4E+02 0.0083 24.6 7.7 55 167-223 18-77 (146)
124 1m72_A Caspase-1; caspase, cys 22.8 2.6E+02 0.009 27.2 8.6 55 167-223 34-92 (272)
125 3fni_A Putative diflavin flavo 22.6 79 0.0027 28.0 4.4 36 515-551 5-44 (159)
126 2j32_A Caspase-3; Pro-caspase3 22.4 2.8E+02 0.0094 26.6 8.6 55 167-223 18-77 (250)
127 3kuu_A Phosphoribosylaminoimid 22.2 2.3E+02 0.0079 25.7 7.2 57 515-572 13-70 (174)
128 3sir_A Caspase; hydrolase; 2.6 21.0 2.9E+02 0.01 26.6 8.5 55 167-223 22-80 (259)
129 2h54_A Caspase-1; allosteric s 20.8 2.1E+02 0.0071 26.0 6.9 55 166-222 44-100 (178)
130 4ehd_A Caspase-3; caspase, apo 20.7 4.9E+02 0.017 25.3 10.1 56 166-223 45-105 (277)
131 3p45_A Caspase-6; protease, hu 20.4 2.8E+02 0.0097 25.2 7.6 55 167-223 46-105 (179)
132 1f1j_A Caspase-7 protease; cas 20.2 3E+02 0.01 27.3 8.5 55 167-223 71-130 (305)
No 1
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.6e-126 Score=1079.22 Aligned_cols=617 Identities=42% Similarity=0.705 Sum_probs=564.8
Q ss_pred hHHHHHhhcCCCCCCCcccHHHHHHHHHHHhhccCCCCCCCCCCCeEEecCcChhHHHHHHHHHcCCCCCCHHHHhhhhh
Q 006816 2 LIVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQYVCLHLAGFQSVQLEDLKRLCK 81 (630)
Q Consensus 2 ~~~~~~~~~~~GH~g~~ls~~~~~~~L~~~~~~~d~~~~~~~~~Dr~v~s~gH~~~~~y~~~~l~G~~~~~~~~l~~~r~ 81 (630)
++++|+.++++||+|++||++||+++||.++|++||+||+|++|||||||+||++|++|++|+++|++ ++.++|++|||
T Consensus 33 ~~~~~v~~a~sGH~g~~ls~a~i~~~L~~~~l~~~p~~p~~~~rDrfvls~GH~s~~lYa~l~l~G~~-~~~~~l~~fr~ 111 (700)
T 3rim_A 33 LAADAVQKVGNGHPGTAMSLAPLAYTLFQRTMRHDPSDTHWLGRDRFVLSAGHSSLTLYIQLYLGGFG-LELSDIESLRT 111 (700)
T ss_dssp HHHHHHHHHTCSCCHHHHHTHHHHHHHHHTTCCCCTTCTTCTTCCEEEESSTTCHHHHHHHHHHTTSS-CCHHHHTTTTS
T ss_pred HHHHHHHHhCCCCCCccHHHHHHHHHHHHHHhCCCCCCCCCCCCCeEEECCCchhHHHHHHHHHhCCC-CCHHHHHHhhc
Confidence 68999999999999999999999999999999999999999999999999999999999999999997 99999999999
Q ss_pred cCCCCCCCCCCCCcCcccccccccchhHHHHHHHHHHHHHHhhhhCCCCC---ccCCceEEEEEcccccCchhHHHHHHH
Q 006816 82 MGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEAHLAARFNKPDA---VVVDHRTYCIMSDGCAMEGISHEAAAL 158 (630)
Q Consensus 82 ~~s~~~g~p~~~~~~~~~~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~---~~~~~~v~~~~GDG~~~eG~~~eal~~ 158 (630)
++|.++|||++..+||+++++|+||+|+|+|+|+|+|.|+++++||++++ +..+++|||++|||+++||++|||+++
T Consensus 112 ~gs~~~ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~k~~~~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~ 191 (700)
T 3rim_A 112 WGSKTPGHPEFRHTPGVEITTGPLGQGLASAVGMAMASRYERGLFDPDAEPGASPFDHYIYVIASDGDIEEGVTSEASSL 191 (700)
T ss_dssp TTCSCCSSCCBTTBTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTSCTTCSTTCCCEEEEEEHHHHHSHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCccccccccCCcchHHHHHHHHHHHHhhhccccccccccCCCCeEEEEECCcccccChHHHHHHH
Confidence 99999999998789999999999999999999999999999999999876 557899999999999999999999999
Q ss_pred hHHcCCCcEEEEEECCCCcccccccccChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeeccc
Q 006816 159 AAHWKLNKLTLIYDDNHNTIDGPTSLVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRE 238 (630)
Q Consensus 159 a~~~~L~~li~i~~~N~~~i~~~~~~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~ 238 (630)
|++++|||+|+|+|||+++|++++.....+++.++|++|||+++.|.||| |+++|.+|+++|++..++|++|+|+|+||
T Consensus 192 A~~~~L~nli~i~d~N~~si~~~~~~~~~~~~~~~~~a~G~~~~~V~DG~-D~~al~~Al~~A~~~~~~P~lI~~~T~kG 270 (700)
T 3rim_A 192 AAVQQLGNLIVFYDRNQISIEDDTNIALCEDTAARYRAYGWHVQEVEGGE-NVVGIEEAIANAQAVTDRPSFIALRTVIG 270 (700)
T ss_dssp HHHTTCTTEEEEEEECSEETTEEGGGTCCCCHHHHHHHHTCEEEEEECTT-CHHHHHHHHHHHHHCCSSCEEEEEECCTT
T ss_pred HHHcCCCcEEEEEECCCcccccchhhccchhHHHHHHHcCCeEEEECCCC-CHHHHHHHHHHHHHcCCCCEEEEEEEEee
Confidence 99999999999999999999999987778899999999999999976999 99999999999986458999999999999
Q ss_pred ccCcccCC----------------------------CCCCChHHHHHHHHhhhhchhHHHHHHHHHHhhhhcCCchhHhH
Q 006816 239 RVNWVDRD----------------------------QFHVIPMVYREMQIQTDHGERLEKEWCSKVYNYRSKYPHEGAEL 290 (630)
Q Consensus 239 ~~g~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (630)
+ |+++.+ +|.+|+++++.|+...++|...+++|++.+++|++.+|+.+.++
T Consensus 271 ~-G~~~~e~~~~~Hg~~~~~e~~~~~~~~l~~~~~~~f~v~~~v~~~~~~~~~~g~~~~~~w~~~~~~~~~~~p~~~~~~ 349 (700)
T 3rim_A 271 Y-PAPNLMDTGKAHGAALGDDEVAAVKKIVGFDPDKTFQVREDVLTHTRGLVARGKQAHERWQLEFDAWARREPERKALL 349 (700)
T ss_dssp T-TCTTTTTSHHHHHSCCCHHHHHHHHHHHTCCTTCSSCCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred e-cCCccCCCccccCCCCCHHHHHHHHHHcCCCcccCccCCHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhChHHHHHH
Confidence 8 886322 15567778888877667788889999999999999999999999
Q ss_pred HHHhcCCCCCCccccCCCCCCCCCCchHHHHHHHHHHHHHHhCCCeEEEecCCCCCcccccccccCcCCCCCC------C
Q 006816 291 DLLLNGGLLPGWENALPKWSTSDPLDATRGYSEKCLNQLAKVLPGLIGGSADLASSNKAYLLGYHDFSQPDSP------W 364 (630)
Q Consensus 291 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~r~a~~~~L~~l~~~~~~iv~~~aD~~~s~~~~~~~~~~f~~~~~~------p 364 (630)
++.+++++|..|....|+|..+.++++||++++++|.++++++|+++++++|++.|+++.+++++.| + ++| |
T Consensus 350 ~~~~~~~~p~~~~~~~p~~~~~~~~~atr~a~~~~L~~l~~~~p~vv~~saDl~~s~~t~~~~~~~f-~-~~~~~~~~~p 427 (700)
T 3rim_A 350 DRLLAQKLPDGWDADLPHWEPGSKALATRAASGAVLSALGPKLPELWGGSADLAGSNNTTIKGADSF-G-PPSISTKEYT 427 (700)
T ss_dssp HHHHTTCCCTTTTSSCCCCCTTSSCEEHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCSCTTCCEE-S-CGGGCCSSCC
T ss_pred HHHhccCCCcchhhhcccccccccchHHHHHHHHHHHHHHhhCCCEEEEeCCccCCCCcccccchhh-c-ccccccccCC
Confidence 9999998998887777888655578999999999999999999999999999998888766667778 4 577 8
Q ss_pred ----CCccccccchHHHHHHHHHHHhcCCCCceEeeehHHHHHhhHHHHHHhcccCCCeEEEEecCCCCCCCCCCCCCCh
Q 006816 365 ----GRNIRYGVREHAMAGISNGVALHGGGLIPFAATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPV 440 (630)
Q Consensus 365 ----~R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~~g~~G~tHq~~ 440 (630)
+||||+|||||+|+++|+|||++| |++||+++|+.|++|+++|||++|+|++||+++++|+|+++|+||+|||++
T Consensus 428 ~~~~~R~id~GIaE~~mv~~A~GlA~~g-G~~Pv~~tF~~F~d~~~~~ir~~al~~lpvv~v~thdg~gvG~dG~THq~i 506 (700)
T 3rim_A 428 AHWYGRTLHFGVREHAMGAILSGIVLHG-PTRAYGGTFLQFSDYMRPAVRLAALMDIDTIYVWTHDSIGLGEDGPTHQPI 506 (700)
T ss_dssp EETTCCEEECCSCHHHHHHHHHHHHHHS-SCEEEEEEEGGGGGGGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTSCS
T ss_pred cccCCceeecCccHHHHHHHHHHHHHcC-CCEEEEEecHHHHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCCccCCh
Confidence 599999999999999999999994 399999999999999999999999999999999999999999999999999
Q ss_pred hhhHHhhcCCCcEEEecCChHHHHHHHHHHHHcCC--CcEEEEEcCCCcccccCCCcccccccccEEEecCCCCC-----
Q 006816 441 EQLAGLRAVPRLLAFRPADGNETAGSYRVAIANRD--VPSVIALSRQKIAANLEGTSADEVERGGYIVSDNSSEN----- 513 (630)
Q Consensus 441 ~d~a~l~~iP~l~v~~P~d~~e~~~~l~~a~~~~~--~P~~ir~~r~~~~~~~~~~~~~~~~~G~~~~~~~~~~G----- 513 (630)
||+++||+||||+|++|+|++|++++|++|+++.+ +|++||++|+.+ |.++....+.+++|+|++++ |
T Consensus 507 ed~a~lr~iPnl~V~~Pad~~e~~~~l~~Ai~~~~~~~Pv~ir~~r~~~-~~~~~~~~~~~~~G~~vlr~----g~~~~~ 581 (700)
T 3rim_A 507 EHLSALRAIPRLSVVRPADANETAYAWRTILARRNGSGPVGLILTRQGV-PVLDGTDAEGVARGGYVLSD----AGGLQP 581 (700)
T ss_dssp SHHHHHHTSTTCEEECCSSHHHHHHHHHHHHTTTTCSSCEEEECCSSEE-CCCTTCCHHHHHHSCEEEEC----CSCCCT
T ss_pred hHHHHHhcCCCCEEEeCCCHHHHHHHHHHHHHccCCCCCEEEEeccccC-CCcCcccccccCCCcEEEec----CCcccc
Confidence 99999999999999999999999999999999845 699999999998 76654324568889987665 4
Q ss_pred --CCcEEEEEeCchHHHHHHHHHHHHhcCCceEEEEcccccccCcccHHHHhccCCCCCeeEEEEecCCcccccccccCc
Q 006816 514 --KPEIILIGTGTELSLCEGTAKTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLPSRVVKRVSVEAGSSVGWREYVGVE 591 (630)
Q Consensus 514 --~~dvtiva~G~~v~~a~~aa~~L~~~gi~~~Vi~~~~i~pld~~~~~~~~~v~~~~~~~~v~vEe~~~~g~~~~~~~~ 591 (630)
+.|||||++|+||+.|++|++.|+++||+++|||++|++|||.+...++++++++.++.+|++|++...||.+++...
T Consensus 582 ~~~~dvtiia~G~~v~~al~Aa~~L~~~Gi~~~VVd~~~i~p~D~~~~~~~~~v~~~~~~~~vtvEe~~~~G~~~~~~~~ 661 (700)
T 3rim_A 582 GEEPDVILIATGSEVQLAVAAQTLLADNDILARVVSMPCLEWFEAQPYEYRDAVLPPTVSARVAVEAGVAQCWHQLVGDT 661 (700)
T ss_dssp TCCCSEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHSCHHHHHHHSCTTCCCEEEECSSCSGGGHHHHCTT
T ss_pred CCCCCEEEEEechHHHHHHHHHHHHHhcCCCeEEEEeccccccCcccHHHHHHHhcccceEEEEEeCCCchhHHHHHhcC
Confidence 139999999999999999999999999999999999999999988777788887533334999999999998887666
Q ss_pred ceEEEeccCCCCCCHHHHHHHcCCChHHHHHHHHHhhh
Q 006816 592 GKVIGVEEFGASGAYLDTFKKYGFTIDNVTKVARSLLS 629 (630)
Q Consensus 592 ~~~~g~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l~ 629 (630)
.+++|+|.|+.||+.++|+++||||+++|+++|+++++
T Consensus 662 ~~~igid~Fg~sg~~~~l~~~~Glt~e~I~~~i~~~l~ 699 (700)
T 3rim_A 662 GEIVSIEHYGESADHKTLFREYGFTAEAVAAAAERALD 699 (700)
T ss_dssp CEEECCCSCCCSSCHHHHHHHTTCSHHHHHHHHHHHHC
T ss_pred CcEEccCcCcCcCCHHHHHHHhCcCHHHHHHHHHHHhh
Confidence 78899999999999999999999999999999999875
No 2
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=100.00 E-value=1.4e-123 Score=1056.56 Aligned_cols=619 Identities=45% Similarity=0.802 Sum_probs=559.7
Q ss_pred hHHHHHhhcCCCCCCCcccHHHHHHHHHHHhhccCCCCCCCCCCCeEEecCcChhHHHHHHHHHcCCCCCCHHHHhhhhh
Q 006816 2 LIVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQYVCLHLAGFQSVQLEDLKRLCK 81 (630)
Q Consensus 2 ~~~~~~~~~~~GH~g~~ls~~~~~~~L~~~~~~~d~~~~~~~~~Dr~v~s~gH~~~~~y~~~~l~G~~~~~~~~l~~~r~ 81 (630)
++++|+.++++||+|++||++||+++||..+|+|||+||+|++|||||||+||++|++|++|+++|++ ++.++|++|||
T Consensus 40 ~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~l~~~p~~p~~~~rDrfvls~GH~~~~lYa~l~l~G~~-~~~~~l~~~rq 118 (690)
T 3m49_A 40 LSIDAIEKANSGHPGMPMGAAPMAYTLWTQFMKHNPNNPTWFNRDRFVLSAGHGSMLLYSLLHLSGYD-VTMDDLKNFRQ 118 (690)
T ss_dssp HHHHHHHHHTCSCCHHHHHHHHHHHHHHHHTCCCCTTCTTCTTSCEEEESSGGGHHHHHHHHHHTTSS-CCHHHHTTTTC
T ss_pred HHHHHHHhcCCCCCCcchHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEECCccHHHHHHHHHHHHCCC-CCHHHHHhhcc
Confidence 68899999999999999999999999999999999999999999999999999999999999999997 99999999999
Q ss_pred cCCCCCCCCCCCCcCcccccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHH
Q 006816 82 MGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAH 161 (630)
Q Consensus 82 ~~s~~~g~p~~~~~~~~~~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~ 161 (630)
++|.++|||++.++||+++++|+||+++|+|+|+|+|.|+++.+||+++++..+++|||++|||+++||++|||+++|++
T Consensus 119 ~gs~~~Ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~v~~i~GDG~l~eG~~~Eal~~A~~ 198 (690)
T 3m49_A 119 WGSKTPGHPEYGHTAGVDATTGPLGQGIATAVGMAMAERHLAAKYNRDAYNIVDHYTYAICGDGDLMEGVSAEASSLAAH 198 (690)
T ss_dssp TTCSSCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCSCCCEEEEECHHHHHSHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCccccCCccccccHHHHHHHHHHHHHhhccccccccccCCCeEEEEECchhhhhccHHHHHHHHHH
Confidence 99999999998889999999999999999999999999999999999888888999999999999999999999999999
Q ss_pred cCCCcEEEEEECCCCcccccccccChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeecccccC
Q 006816 162 WKLNKLTLIYDDNHNTIDGPTSLVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRERVN 241 (630)
Q Consensus 162 ~~L~~li~i~~~N~~~i~~~~~~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~~~g 241 (630)
++|+|+++|+|||+|+|+++++....+|+.++|++|||++++|+||| |+++|.+|+++|++..++|++|+|+|.||+ |
T Consensus 199 ~~L~~livI~dnN~~~i~~~~~~~~~~d~~~~~~a~G~~~~~v~DG~-d~~~l~~Al~~a~~~~~~P~lI~v~T~kG~-G 276 (690)
T 3m49_A 199 LQLGRLVVLYDSNDISLDGDLNRSFSESVEDRYKAYGWQVIRVEDGN-DIEAIAKAIEEAKADEKRPTLIEVRTTIGF-G 276 (690)
T ss_dssp TTCTTEEEEEEECSBCSSSBGGGTCCCCHHHHHHHHTCEEEEESCTT-CHHHHHHHHHHHHHCCSSCEEEEEECCTTT-T
T ss_pred hCCCeEEEEEECCCeecccchhhccchhHHHHHHHcCCcEEEEecCC-CHHHHHHHHHHHHhcCCCCEEEEEEeeccc-c
Confidence 99999999999999999999988788999999999999999988999 999999999999863589999999999999 8
Q ss_pred cccCC----------------------------CCCCChHHHHHHHH-hhhhchhHHHHHHHHHHhhhhcCCchhHhHHH
Q 006816 242 WVDRD----------------------------QFHVIPMVYREMQI-QTDHGERLEKEWCSKVYNYRSKYPHEGAELDL 292 (630)
Q Consensus 242 ~~~~~----------------------------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (630)
++..+ +|.+|.++++.|+. ...++.....+|.+.+.++...+|+.++++++
T Consensus 277 ~~~~~~~~~~Hg~~~~~e~~~~~~~~l~~~~~~~F~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~a~~~~~ 356 (690)
T 3m49_A 277 SPNKSGKSASHGSPLGVEETKLTKEAYAWTAEQDFHVAEEVYENFRKTVQDVGETAQAEWNTMLGEYAQAYPELANELQA 356 (690)
T ss_dssp CTTTTTSGGGTSSCCCHHHHHHHHHHTTCCCCSTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred cCcccCcccccCCCCCHHHHHHHHHHhCCCCCCCCcCChhHHHHHHHHHhhhcchhhHHHHHHHHHHHHhCHHHHHHHHH
Confidence 74211 24556666667765 44556667889999999998888998889999
Q ss_pred HhcCCCCCCccccCCCCCCCCCCchHHHHHHHHHHHHHHhCCCeEEEecCCCCCcccccccccCcCCCCCCCCCcccccc
Q 006816 293 LLNGGLLPGWENALPKWSTSDPLDATRGYSEKCLNQLAKVLPGLIGGSADLASSNKAYLLGYHDFSQPDSPWGRNIRYGV 372 (630)
Q Consensus 293 ~~~~~~p~~~~~~~~~~~~~~~~~~~r~a~~~~L~~l~~~~~~iv~~~aD~~~s~~~~~~~~~~f~~~~~~p~R~~~~gI 372 (630)
.+++++|..|....|.|+.+ ++++||++++++|.++++++|+++++++|++.|+++.++.++.| +++.+|+||||+||
T Consensus 357 ~~~~~lp~~~~~~~~~~~~~-~~~a~R~a~g~~L~~~~~~~p~vv~~~aDl~~s~~~~~~~~~~f-~~~~~~~R~~d~GI 434 (690)
T 3m49_A 357 AMNGLLPEGWEQNLPTYELG-SKAATRNSSGAVINAIAESVPSFFGGSADLAGSNKTYMNNEKDF-TRDDYSGKNIWYGV 434 (690)
T ss_dssp HHTTCCCTTGGGGCCCCCTT-CEEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTSCBC-BTTBTTCCEEECCS
T ss_pred HhcccCchhhhhhccccccc-cchHHHHHHHHHHHHHHhhCCCEEEEeCcccccCCccccccccc-hhhcCCCceEEcCc
Confidence 89999998888888888643 67899999999999999999999999999999998877777888 54456999999999
Q ss_pred chHHHHHHHHHHHhcCCCCceEeeehHHHHHhhHHHHHHhcccCCCeEEEEecCCCCCCCCCCCCCChhhhHHhhcCCCc
Q 006816 373 REHAMAGISNGVALHGGGLIPFAATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAVPRL 452 (630)
Q Consensus 373 aE~~~vg~a~GlA~~G~~~~pv~~~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~~g~~G~tHq~~~d~a~l~~iP~l 452 (630)
|||+|+++|+|||++| |++||++||+.|++++..|||++|++++||+++++|+|+++|+||+|||++||+++||+||||
T Consensus 435 aE~~mv~~A~GlA~~g-G~~P~~~tf~~Fs~f~~~air~~al~~lpVv~v~~~~gigvG~dG~THq~ied~a~lr~iPnl 513 (690)
T 3m49_A 435 REFAMGAAMNGIALHG-GLKTYGGTFFVFSDYLRPAIRLAALMQLPVTYVFTHDSIAVGEDGPTHEPIEQLAALRAMPNV 513 (690)
T ss_dssp CHHHHHHHHHHHHHHS-SCEEEEEEEGGGGGGGHHHHHHHHHHTCCCEEEEECCSGGGCTTCGGGCCSSHHHHHHTSTTC
T ss_pred hHHHHHHHHHHHHHcC-CCEEEEEecHHHHHHHHHHHHHHHhcCCCcEEEEECCCcCCCCCCCccCCHHHHHHHhcCCCC
Confidence 9999999999999993 399999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCChHHHHHHHHHHHHcCCCcEEEEEcCCCcccccCCCc---ccccccccEEEecCCCCCCCcEEEEEeCchHHHH
Q 006816 453 LAFRPADGNETAGSYRVAIANRDVPSVIALSRQKIAANLEGTS---ADEVERGGYIVSDNSSENKPEIILIGTGTELSLC 529 (630)
Q Consensus 453 ~v~~P~d~~e~~~~l~~a~~~~~~P~~ir~~r~~~~~~~~~~~---~~~~~~G~~~~~~~~~~G~~dvtiva~G~~v~~a 529 (630)
+|++|+|++|++.+|++|+++.++|++||++|+.+ |.++.+. .+.+++|+|++++. ++|++||||||+|+||+.|
T Consensus 514 ~V~~Pad~~E~~~~l~~Ai~~~~~Pv~ir~~R~~~-p~~~~~~~~~~~~~~~G~~vlr~g-~~g~~dvtiia~G~~v~~A 591 (690)
T 3m49_A 514 SVIRPADGNESVAAWRLALESTNKPTALVLTRQDL-PTLEGAKDDTYEKVAKGAYVVSAS-KKETADVILLATGSEVSLA 591 (690)
T ss_dssp EEECCSSHHHHHHHHHHHHHCSSSCEEEECCSSEE-ECCHHHHTTHHHHHHTSCEEEECC-SSSSCSEEEEECTTHHHHH
T ss_pred EEEeeCCHHHHHHHHHHHHHcCCCCEEEEeecccC-CCCCccccccccccCCCeEEEEec-CCCCCCEEEEEechHHHHH
Confidence 99999999999999999999757999999999988 7654321 24678899877761 1021399999999999999
Q ss_pred HHHHHHHHhcCCceEEEEcccccccCcccHHHHhccCCCCCeeEEEEecCCcccccccccCcceEEEeccCCCCCCHHHH
Q 006816 530 EGTAKTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLPSRVVKRVSVEAGSSVGWREYVGVEGKVIGVEEFGASGAYLDT 609 (630)
Q Consensus 530 ~~aa~~L~~~gi~~~Vi~~~~i~pld~~~~~~~~~v~~~~~~~~v~vEe~~~~g~~~~~~~~~~~~g~d~f~~~g~~~~l 609 (630)
++|++.|+++||+++|||++|++|||.+...+++++++..++.+|++|++...||.+++.....++|+|.|+.||+.++|
T Consensus 592 l~Aa~~L~~~GI~~~Vid~~~i~p~D~~d~~~~~~v~~~~~~~~v~vEe~~~~G~~~~~~~~~~~igid~Fg~sg~~~~l 671 (690)
T 3m49_A 592 VEAQKALAVDGVDASVVSMPSMDRFEAQTAEYKESVLPKAVTKRFAIEMGATFGWHRYVGLEGDVLGIDTFGASAPGEKI 671 (690)
T ss_dssp HHHHHHHHHTTCCEEEEECSCHHHHHTSCHHHHHHHSCTTCCCEEEECSSCCTTTHHHHTTTCEEECCCSCCCSSCHHHH
T ss_pred HHHHHHHHhcCCCeEEEecccCCcCccccHHHHHHHhhccCCeEEEEECCchhhHHHHhccCCCEEccCcCcCcCCHHHH
Confidence 99999999999999999999999999987777788884322334999999999998887666678999999999999999
Q ss_pred HHHcCCChHHHHHHHHHhh
Q 006816 610 FKKYGFTIDNVTKVARSLL 628 (630)
Q Consensus 610 ~~~~gl~~~~I~~~i~~~l 628 (630)
+++||||+++|+++|+++|
T Consensus 672 ~~~~Glt~e~I~~~i~~~l 690 (690)
T 3m49_A 672 MEEYGFTVENVVRKVKEML 690 (690)
T ss_dssp HHHTTCSHHHHHHHHHHHC
T ss_pred HHHHCcCHHHHHHHHHHhC
Confidence 9999999999999999875
No 3
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=100.00 E-value=2.5e-124 Score=1064.35 Aligned_cols=614 Identities=45% Similarity=0.759 Sum_probs=551.5
Q ss_pred hHHHHHhhcCCCCCCCcccHHHHHHHHHHHhhccCCCCCCCCCCCeEEecCcChhHHHHHHHHHcCCCCCCHHHHhhhhh
Q 006816 2 LIVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQYVCLHLAGFQSVQLEDLKRLCK 81 (630)
Q Consensus 2 ~~~~~~~~~~~GH~g~~ls~~~~~~~L~~~~~~~d~~~~~~~~~Dr~v~s~gH~~~~~y~~~~l~G~~~~~~~~l~~~r~ 81 (630)
++++|+.++++||+|++||++||+++||.++|+|||+||+|++|||||||+||++|++|++++++|++ ++.++|++|||
T Consensus 55 ~~i~~v~~a~~GH~g~~l~~aei~~~L~~~~~~~~~~~p~~~~rDrfvls~GH~s~~lYa~l~l~G~~-~~~~~l~~~r~ 133 (711)
T 3uk1_A 55 LAMDAVQQANSGHPGMPMGMAEIGVALWSRHLKHNPTNPHWADRDRFVLSNGHGSMLLYSLLHLTGYD-LPIEELKNFRQ 133 (711)
T ss_dssp HHHHHHHHHTCSCCHHHHHTHHHHHHHHHHTCCCCTTCTTCTTCCEEEECSGGGHHHHHHHHHHHTCS-CCHHHHHTTTS
T ss_pred HHHHHHHhcCCCccCchHHHHHHHHHHHhhhEeeCCCCCCCCCCCeEEEeCCcccHHHHHHHHHhCCC-CCHHHHHhhcc
Confidence 68999999999999999999999999999999999999999999999999999999999999999997 99999999999
Q ss_pred cCCCCCCCCCCCCcCcccccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHH
Q 006816 82 MGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAH 161 (630)
Q Consensus 82 ~~s~~~g~p~~~~~~~~~~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~ 161 (630)
++|.++|||++..+||+++++|+||+++|+|+|+|+|.++++.+||+++++..+++|||++|||+++||++|||+++|++
T Consensus 134 ~~s~~~ghp~~~~~~gve~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~vv~i~GDG~l~eG~~~Eal~~A~~ 213 (711)
T 3uk1_A 134 LHSKTPGHPEYGITPGVETTTGPLGQGLANAVGMALGEALLAAEFNRDDAKIVDHHTYVFLGDGCLMEGISHEACSLAGT 213 (711)
T ss_dssp TTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCCCCCCcccCccchhhHHHHHHHHHHHHHhhcccccccccccCCCeEEEEECCcchhhccHHHHHHHHHH
Confidence 99999999998789999999999999999999999999999999999888888999999999999999999999999999
Q ss_pred cCCCcEEEEEECCCCcccccccccChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeecccccC
Q 006816 162 WKLNKLTLIYDDNHNTIDGPTSLVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRERVN 241 (630)
Q Consensus 162 ~~L~~li~i~~~N~~~i~~~~~~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~~~g 241 (630)
++|||+|+|+|||+++|+++++....+|+.++|++|||++++++||| |+++|.+++++|++ .++|++|+|+|+||+ |
T Consensus 214 ~~L~~livI~dnN~~~i~~~~~~~~~~d~~~~~~a~G~~~~~~vdG~-d~~~l~~Al~~A~~-~~~P~lI~v~T~kG~-G 290 (711)
T 3uk1_A 214 LKLNKLIALYDDNGISIDGDVVNWFHDDTPKRFEAYGWNVIPNVNGH-DVDAIDAAIAKAKR-SDKPSLICCKTRIGN-G 290 (711)
T ss_dssp TTCTTEEEEEEECSEETTEEGGGTCCCCHHHHHHHTTCEEEEEEETT-CHHHHHHHHHHHTT-CSSCEEEEEEC------
T ss_pred hCCCcEEEEEECCCcccccchhhhcCCCHHHHHHHcCCcEEEEeCCC-CHHHHHHHHHHHHh-CCCCEEEEEcccccc-C
Confidence 99999999999999999999987778999999999999999944999 99999999999997 799999999999999 8
Q ss_pred cccC---------------------------CCCCCChHHHHHHHHhhhhchhHHHHHHHHHHhhhhcCCchhHhHHHHh
Q 006816 242 WVDR---------------------------DQFHVIPMVYREMQIQTDHGERLEKEWCSKVYNYRSKYPHEGAELDLLL 294 (630)
Q Consensus 242 ~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (630)
++.. ++|.+|+++++.|+.. ++|.....+|.+.+.++.+.+|+.+.++++.+
T Consensus 291 ~~~~e~~~~~Hg~~l~~e~~~~~~~~l~~~~~pF~~~~~~~~~~~~~-~~g~~~~~~w~~~~~~~~~~~p~~a~~~~~~~ 369 (711)
T 3uk1_A 291 AATKAGGHDVHGAPLGADEIAKTREALGWTWAPFVIPQEVYAAWDAK-EAGKRSEDDWNAAFAQYRAKYPAEAAEFERRM 369 (711)
T ss_dssp ---------------CHHHHHHHHHHHTCCCCTTCCCHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred CCCCCCcccccCCCCCHHHHHHHHHHhCCCCCCccCChHHHHHHHHH-hccchhHHHHHHHHHHHHhhChhhHHHHHHhh
Confidence 8521 1244555666666544 55666778999999889888898888898888
Q ss_pred cCCCCCCccccCCCCC----CCCCCchHHHHHHHHHHHHHHhCCCeEEEecCCCCCcccccccccCcCCCCC---CC---
Q 006816 295 NGGLLPGWENALPKWS----TSDPLDATRGYSEKCLNQLAKVLPGLIGGSADLASSNKAYLLGYHDFSQPDS---PW--- 364 (630)
Q Consensus 295 ~~~~p~~~~~~~~~~~----~~~~~~~~r~a~~~~L~~l~~~~~~iv~~~aD~~~s~~~~~~~~~~f~~~~~---~p--- 364 (630)
++++|..|...++.+. ..+++++||++++++|.++++.+|+++++++|+++|+++.+++++.| + ++ ||
T Consensus 370 ~~~~p~~~~~~~~~~~~~~~~~~~~~atR~A~~~~L~~l~~~~p~vv~~~aDl~~s~~~~~~~~~~f-~-~~~~~~p~~~ 447 (711)
T 3uk1_A 370 AGTLPADWAAKAAAIVAGANERGETVATRKASQQTIEGLAAVLPELLGGSADLTGSNLTNWKASKAV-R-ANADGPGVQW 447 (711)
T ss_dssp HTCCCTTHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTCCBC-E-ECSSSSSEEC
T ss_pred ccCCCchHHHHhhHhhhhhhccccchhHHHHHHHHHHHHHhhCCCEEEEeccccCcCCcccccchhh-h-hhhccCCCCC
Confidence 8888877755443321 12467899999999999999999999999999999888766667788 5 57 99
Q ss_pred CCccccccchHHHHHHHHHHHhc-CCCCceEeeehHHHHHhhHHHHHHhcccCCCeEEEEecCCCCCCCCCCCCCChhhh
Q 006816 365 GRNIRYGVREHAMAGISNGVALH-GGGLIPFAATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQL 443 (630)
Q Consensus 365 ~R~~~~gIaE~~~vg~a~GlA~~-G~~~~pv~~~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~~g~~G~tHq~~~d~ 443 (630)
+||||+|||||+|+++|+|||++ | ++||+++|++|++|+++|||++|++++||++++||+|+++|+||+|||++||+
T Consensus 448 ~R~~d~GIaE~~mv~~AaGlA~~~G--~~Pv~~~f~~F~~~~~~~ir~~a~~~lpv~~v~thdg~gvG~dG~THq~~ed~ 525 (711)
T 3uk1_A 448 GNHINYGVREFGMSAAINGLVLHGG--YKPFGGTFLTFSDYSRNALRVAALMKVPSIFVFTHDSIGLGEDGPTHQSVEHV 525 (711)
T ss_dssp CSEEECCSCHHHHHHHHHHHHHHSS--CEEEEEEEGGGHHHHHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHH
T ss_pred CcEEEeCccHHHHHHHHHHHHHcCC--CEEEEEEhHHHHHHHHHHHHHhhhcCCCEEEEEECCCcCcCCCCCccCChhHH
Confidence 99999999999999999999996 6 99999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCcEEEecCChHHHHHHHHHHHHcCCCcEEEEEcCCCcccccCCCc--ccccccccEEEecCCCCC---CCcEE
Q 006816 444 AGLRAVPRLLAFRPADGNETAGSYRVAIANRDVPSVIALSRQKIAANLEGTS--ADEVERGGYIVSDNSSEN---KPEII 518 (630)
Q Consensus 444 a~l~~iP~l~v~~P~d~~e~~~~l~~a~~~~~~P~~ir~~r~~~~~~~~~~~--~~~~~~G~~~~~~~~~~G---~~dvt 518 (630)
++||+||||+|++|+|++|++++|++|++. ++|+|||++|+.+ |.++... .+.+++|+|++++ .+| ++|||
T Consensus 526 a~lr~iPnl~V~~Pad~~E~~~~l~~Ai~~-~~Pv~ir~~r~~~-p~~~~~~~~~~~i~~G~~vl~~--~~G~~~~~dvt 601 (711)
T 3uk1_A 526 ASLRLIPNLDVWRPADTVETAVAWTYAVAH-QHPSCLIFSRQNL-AFNARTDAQLANVEKGGYVLRD--WDEEIVARKII 601 (711)
T ss_dssp HHHHTSTTCEEECCSSHHHHHHHHHHHHHS-SSCEEEECCSSEE-CCCCCCHHHHHHGGGSSEEEEC--CCSSCCSEEEE
T ss_pred HHHhcCCCCEEEecCCHHHHHHHHHHHHhc-CCCEEEEeeCCCC-CCCCCccccccccCCCeEEEEe--cCCCCCCCCEE
Confidence 999999999999999999999999999996 9999999999988 7665432 2568899998775 224 26999
Q ss_pred EEEeCchHHHHHHHHHHHHhcCCceEEEEcccccccCcccHHHHhccCCCCCeeEEEEecCCcccccccccCcceEEEec
Q 006816 519 LIGTGTELSLCEGTAKTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLPSRVVKRVSVEAGSSVGWREYVGVEGKVIGVE 598 (630)
Q Consensus 519 iva~G~~v~~a~~aa~~L~~~gi~~~Vi~~~~i~pld~~~~~~~~~v~~~~~~~~v~vEe~~~~g~~~~~~~~~~~~g~d 598 (630)
||++|+||++|++|++.|+++||+++|||++|++|||+|+..|+++|++++..+ |++|++...||+++++.+.+++|+|
T Consensus 602 iia~G~~v~~al~Aa~~L~~~GI~~~Vid~~si~plD~~~~~~~~sv~~~~~~~-V~vE~~~~~g~~~~~g~~~~~iGid 680 (711)
T 3uk1_A 602 LIATGSEVELAMKAVEPLAQQGIAARVVSMPSSDVFDRQDAEYRERVLPHGVRR-VAIEAGVTDFWRKYVGLEGGVVGID 680 (711)
T ss_dssp EEECTTHHHHHHHHHHHHHHTTEEEEEEECSCHHHHHTSCHHHHHHHSCTTSCE-EEECSSCSGGGHHHHTTTSEEECCC
T ss_pred EEEecHHHHHHHHHHHHHHHcCCCeEEEecCcCCccchhHHHHHHHhhccCCeE-EEEeCCccccHHHHhCCCceEEEeC
Confidence 999999999999999999999999999999999999999988888999988545 9999999999988877777899999
Q ss_pred cCCCCCCHHHHHHHcCCChHHHHHHHHHhhh
Q 006816 599 EFGASGAYLDTFKKYGFTIDNVTKVARSLLS 629 (630)
Q Consensus 599 ~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l~ 629 (630)
+|+.||+.++|+++||||+++|+++|+++|.
T Consensus 681 ~Fg~sg~~~~L~~~~Glt~e~Iv~~~~~~l~ 711 (711)
T 3uk1_A 681 TFGESAPAGVLFKHFGFTVEHVIETAKAVLA 711 (711)
T ss_dssp SCCCSSCHHHHHHHTTCSHHHHHHHHHHHHC
T ss_pred CCcCcCCHHHHHHHHCcCHHHHHHHHHHHhC
Confidence 9999999999999999999999999999873
No 4
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=100.00 E-value=3.3e-123 Score=1051.95 Aligned_cols=613 Identities=40% Similarity=0.712 Sum_probs=544.6
Q ss_pred hHHHHHhhcCCCCCCCcccHHHHHHHHHHHhhccCCCCCCCCCCCeEEecCcChhHHHHHHHHHcCCCCCCHHHHhhhhh
Q 006816 2 LIVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQYVCLHLAGFQSVQLEDLKRLCK 81 (630)
Q Consensus 2 ~~~~~~~~~~~GH~g~~ls~~~~~~~L~~~~~~~d~~~~~~~~~Dr~v~s~gH~~~~~y~~~~l~G~~~~~~~~l~~~r~ 81 (630)
++++|+.++++||+|++||++||+++||.++|+|||+||+|++|||||||+||++|++|++++++|++ ++.++|++|||
T Consensus 16 ~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~~~~~~~~p~~~~rDrfvls~GH~s~~lYa~l~l~G~~-~~~~~l~~~r~ 94 (663)
T 3kom_A 16 LSIDATLKAKSGHPGMPMGMADIATVLWTKFLKHNPNNPHWINRDRFVLSNGHGSMLLYSLLHLTGYD-LSIEDIKNFRQ 94 (663)
T ss_dssp HHHHHHHHHTCSCCHHHHHHHHHHHHHHHHTCCCCTTCTTCTTSCEEEECSSSCHHHHHHHHHHHTCS-CCHHHHTTTTS
T ss_pred HHHHHHHhcCCCCCCccHHHHHHHHHHHhhheeeCCCCCCCCCCCeEEEeCCcccHHHHHHHHHhCCC-CCHHHHHhhcc
Confidence 68999999999999999999999999999999999999999999999999999999999999999997 99999999999
Q ss_pred cCCCCCCCCCCCCcCcccccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHH
Q 006816 82 MGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAH 161 (630)
Q Consensus 82 ~~s~~~g~p~~~~~~~~~~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~ 161 (630)
++|.++|||++..+||+++++|+||+|+|+|+|+|+|.++++.+||+++++..+++|||++|||+++||++|||+++|++
T Consensus 95 ~~s~~~ghp~~~~~~gve~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~d~~v~~i~GDG~l~eG~~~Eal~~A~~ 174 (663)
T 3kom_A 95 LHSKTPGHPEYGYTPGVETTTGPLGQGVANAVGMALGEKLLSDRYNTPDLKVIDHHTYVFLGDGCLMEGVSHEACSLAGT 174 (663)
T ss_dssp TTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCSCCCCEEEEECHHHHHSHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCcccCCcchhhHHHHHHHHHHhHHhhcccccccccccCCCeEEEEECchhhhhchHHHHHHHHHH
Confidence 99999999998889999999999999999999999999999999999888778999999999999999999999999999
Q ss_pred cCCCcEEEEEECCCCcccccccccChhcHHHHHHhCCCeEE-EEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeeccccc
Q 006816 162 WKLNKLTLIYDDNHNTIDGPTSLVLSEDISARFKSLGWNTI-MVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRERV 240 (630)
Q Consensus 162 ~~L~~li~i~~~N~~~i~~~~~~~~~~~~~~~~~a~G~~~~-~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~~~ 240 (630)
++|||+++|+|||+|+|+++++....+|+.++|++|||+++ .| ||| |+++|.+++++|++..++|++|+|+|.||+
T Consensus 175 ~~L~~livi~dnN~~~i~~~~~~~~~~d~~~~~~a~G~~~~~~v-dG~-d~~~l~~al~~A~~~~~~P~lI~~~T~kg~- 251 (663)
T 3kom_A 175 LGLNKLVAFWDDNNISIDGDTKGWFSDNTPERFRAYGWHVIENV-DGH-DFVAIEKAINEAHSQQQKPTLICCKTVIGF- 251 (663)
T ss_dssp HTCTTEEEEEEECC-----CGGGTCCCCHHHHHHHTTCEEEEEE-ETT-CHHHHHHHHHHHHHCSSSCEEEEEECCTTT-
T ss_pred hCCCeEEEEEECCCcccccchhhhcchhHHHHHHHCCCeEEEEE-cCC-CHHHHHHHHHHHHhcCCCCEEEEEeccccc-
Confidence 99999999999999999999988788999999999999999 66 999 999999999999863489999999999999
Q ss_pred CcccCC---------------------------CCCCChHHHHHHHHhhhhchhHHHHHHHHHHhhhhcCCchhHhHHHH
Q 006816 241 NWVDRD---------------------------QFHVIPMVYREMQIQTDHGERLEKEWCSKVYNYRSKYPHEGAELDLL 293 (630)
Q Consensus 241 g~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (630)
|+++.+ +|.+|+++++.|+.. +++....++|.+.+.++... | ..+++++.
T Consensus 252 G~~~~e~~~~~Hg~~l~~e~~~~~~~~l~~~~~pf~~~~~~~~~~~~~-~~g~~~~~~w~~~~~~~~~~-p-~~~~~~~~ 328 (663)
T 3kom_A 252 GSPEKAGTASVHGSPLSDQERASAAKELNWDYQAFEIPQDVYKYWDAR-EKGQALEANWQGQRNLFKDS-P-KFDEFERV 328 (663)
T ss_dssp TCTTTTTCSSTTSSCCCHHHHHHHHHHTTCCCCTTCCCHHHHHHHCCH-HHHHHHHHHHHHHHHHHTTS-T-THHHHHHH
T ss_pred ccCCCCCCccccCCCCCHHHHHHHHHHcCCCCCCccCChhHHHHHHHH-hhcchhhHHHHHHHHHhhcc-h-HHHHHHHH
Confidence 986432 122334444444433 34555677999998888777 7 78888888
Q ss_pred hcCCCCCCccccCCCCC----CCCCCchHHHHHHHHHHHHHHhCCCeEEEecCCCCCcccccccccCcCCCCCCCCCccc
Q 006816 294 LNGGLLPGWENALPKWS----TSDPLDATRGYSEKCLNQLAKVLPGLIGGSADLASSNKAYLLGYHDFSQPDSPWGRNIR 369 (630)
Q Consensus 294 ~~~~~p~~~~~~~~~~~----~~~~~~~~r~a~~~~L~~l~~~~~~iv~~~aD~~~s~~~~~~~~~~f~~~~~~p~R~~~ 369 (630)
+++++|..|...++.+. ..+++++||++++++|.++++.+|+++++++|+++|+++.++.++.| ++++||+||||
T Consensus 329 ~~~~~p~~~~~~~~~~~~~~~~~~~~~a~r~a~~~aL~~~~~~~p~vv~~~aDl~~s~~~~~~~~~~f-~~~~~p~R~~d 407 (663)
T 3kom_A 329 LSKELPVGLESAINDYIASQLSNPVKVATRKASQMVLEVLCKNMPEMFGGSADLTGSNNTNWSGSVWL-NNTQEGANYLS 407 (663)
T ss_dssp HHTCCCTTHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHHHHHHCTTEEEEECCC--CCSCCCTTCCBT-TTCSTTCCEEE
T ss_pred hccCCCcchhhhhhhhhhhhhccCcchhHHHHHHHHHHHHHhhCCCEEEEecccCCCCCccccccccc-ccccCCCCeEe
Confidence 88888877754433221 12467899999999999999999999999999999998878777788 44689999999
Q ss_pred cccchHHHHHHHHHHHhcCCCCceEeeehHHHHHhhHHHHHHhcccCCCeEEEEecCCCCCCCCCCCCCChhhhHHhhcC
Q 006816 370 YGVREHAMAGISNGVALHGGGLIPFAATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAV 449 (630)
Q Consensus 370 ~gIaE~~~vg~a~GlA~~G~~~~pv~~~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~~g~~G~tHq~~~d~a~l~~i 449 (630)
+|||||+|+++|+|||+.| |++||+++|++|++|+++|||++|++++||+++++|+|+++|+||+|||++||+++||+|
T Consensus 408 ~GIaE~~~v~~a~GlA~~g-G~~P~~~tf~~F~~~~~~~ir~~a~~~lpvv~~~t~~g~g~G~dG~THq~~ed~a~lr~i 486 (663)
T 3kom_A 408 YGVREFGMAAIMNGLSLYG-GIKPYGGTFLVFSDYSRNAIRMSALMKQPVVHVMSHDSIGLGEDGPTHQPIEHVPSLRLI 486 (663)
T ss_dssp CCSCHHHHHHHHHHHHHHS-SCEEEEEEEGGGHHHHHHHHHHHHHTTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTS
T ss_pred cCccHHHHHHHHHHHHHcC-CCEEEEEehHHHHHHHHHHHHHHHhcCCCEEEEEeCCccccCCCCCCcCCHHHHHHHhcC
Confidence 9999999999999999993 399999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEecCChHHHHHHHHHHHHcCCCcEEEEEcCCCcccccCCCc--ccccccccEEEecCCCCCCCcEEEEEeCchHH
Q 006816 450 PRLLAFRPADGNETAGSYRVAIANRDVPSVIALSRQKIAANLEGTS--ADEVERGGYIVSDNSSENKPEIILIGTGTELS 527 (630)
Q Consensus 450 P~l~v~~P~d~~e~~~~l~~a~~~~~~P~~ir~~r~~~~~~~~~~~--~~~~~~G~~~~~~~~~~G~~dvtiva~G~~v~ 527 (630)
|||+|++|+|++|++.+|++|+++.++|++||++|+.+ |.++... ...++.|+|++++ .+| +||||||+|+|++
T Consensus 487 Pnl~V~~Pad~~e~~~~l~~A~~~~~~Pv~ir~~r~~~-p~~~~~~~~~~~~~~G~~vl~~--~~g-~dvtiia~G~~v~ 562 (663)
T 3kom_A 487 PNLSVWRPADTIETMIAWKEAVKSKDTPSVMVLTRQNL-MPVVQTQHQVANIARGGYLVKD--NPD-AKLTIVATGSEVE 562 (663)
T ss_dssp TTCEEECCCSHHHHHHHHHHHHHCSSCCEEEECCSSEE-CCCCCCHHHHHHHTTTCEEEEC--CTT-CSCEEEECTTHHH
T ss_pred CCcEEEeeCCHHHHHHHHHHHHHhCCCCEEEEccCccC-CCcCccccchhcccCceEEEEe--cCC-CCEEEEEecHHHH
Confidence 99999999999999999999999449999999999988 7665432 2457889888876 336 8999999999999
Q ss_pred HHHHHHHHHHhcCCceEEEEcccccccCcccHHHHhccCCCCCeeEEEEecCCccccccccc-CcceEEEeccCCCCCCH
Q 006816 528 LCEGTAKTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLPSRVVKRVSVEAGSSVGWREYVG-VEGKVIGVEEFGASGAY 606 (630)
Q Consensus 528 ~a~~aa~~L~~~gi~~~Vi~~~~i~pld~~~~~~~~~v~~~~~~~~v~vEe~~~~g~~~~~~-~~~~~~g~d~f~~~g~~ 606 (630)
+|++|++.|+++||+++|||++|++|||+|+..|+++|++++..+ |++|++...||..+++ ....++|+|.|+.||+.
T Consensus 563 ~al~Aa~~L~~~Gi~~~Vi~~~si~p~D~~~~~~~~~vl~~~~~~-v~vE~~~~~g~~~~~gG~~~~~igid~Fg~sg~~ 641 (663)
T 3kom_A 563 LAVKVANEFEKKGIKLNVASIPCVEVFATQAHEYKKTVIKDDIPA-VFVEMAQPDMWYKYMPKAGGEVKGIYSFGESAPA 641 (663)
T ss_dssp HHHHHHHHHHHTTCCCEEEECSCHHHHHTSCHHHHHHHSCTTSCE-EEECSSCCGGGGGGCCTTCEEEECCCSCCCSSCH
T ss_pred HHHHHHHHHHhcCCCeEEEEcCcCCcccccHHHHHHHhcCCCCeE-EEEecCCcccHHHHhcccCCcEEEecCCcCCCCH
Confidence 999999999999999999999999999999988888999887655 9999999999987765 55678999999999999
Q ss_pred HHHHHHcCCChHHHHHHHHHhh
Q 006816 607 LDTFKKYGFTIDNVTKVARSLL 628 (630)
Q Consensus 607 ~~l~~~~gl~~~~I~~~i~~~l 628 (630)
++|+++||||+++|+++|++++
T Consensus 642 ~~l~~~~Glt~e~I~~~~~~~~ 663 (663)
T 3kom_A 642 EDLFKRFGFTVENISNIVAKYV 663 (663)
T ss_dssp HHHHHHHTCSHHHHHHHHTTTC
T ss_pred HHHHHHHCcCHHHHHHHHHhhC
Confidence 9999999999999999998764
No 5
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=100.00 E-value=1.4e-118 Score=1007.97 Aligned_cols=585 Identities=40% Similarity=0.670 Sum_probs=518.3
Q ss_pred hHHHHHhhcCCCCCCCcccHHHHHHHHHHHhhccCCCCCCCCCCCeEEecCcChhHHHHHHHHHcCCCCCCHHHHhhhhh
Q 006816 2 LIVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQYVCLHLAGFQSVQLEDLKRLCK 81 (630)
Q Consensus 2 ~~~~~~~~~~~GH~g~~ls~~~~~~~L~~~~~~~d~~~~~~~~~Dr~v~s~gH~~~~~y~~~~l~G~~~~~~~~l~~~r~ 81 (630)
++++|+.++++||+|++||++|++++| .++|++||+||+|++|||||||+||++|++|++|+++|++ ++.++|++|||
T Consensus 16 ~~i~~v~~a~~GH~g~~lg~~ei~~~L-~~~~~~~p~~p~~~~rDrfvls~GH~~~~lYa~l~l~G~~-~~~~~l~~~r~ 93 (632)
T 3l84_A 16 LSADMVQKANSGHPGAPLGLADILSVL-SYHLKHNPKNPTWLNRDRLVFSGGHASALLYSFLHLSGYD-LSLEDLKNFRQ 93 (632)
T ss_dssp HHHHHHHHHTCSCCHHHHHHHHHHHHH-TTTCCCCTTCTTCTTSCEEEESSGGGHHHHHHHHHHHTCS-CCHHHHTTTTC
T ss_pred HHHHHHHhcCCCCCCcChhHHHHHHHH-HHHhCcCCCCCCCCCCCEEEEcCCcccHHHHHHHHHhCCC-CCHHHHHHHhc
Confidence 688999999999999999999999999 6789999999999999999999999999999999999997 99999999999
Q ss_pred cCCCCCCCCCCCCcCcccccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHH
Q 006816 82 MGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAH 161 (630)
Q Consensus 82 ~~s~~~g~p~~~~~~~~~~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~ 161 (630)
++|.++|||++ ++||+++++|+||+++|+|+|+|+|.++++++||. +..+++|||++|||+++||++|||+++|++
T Consensus 94 ~~s~~~ghp~~-~~~g~~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~---~~~d~~v~~v~GDG~~~eG~~~Eal~~A~~ 169 (632)
T 3l84_A 94 LHSKTPGHPEI-STLGVEIATGPLGQGVANAVGFAMAAKKAQNLLGS---DLIDHKIYCLCGDGDLQEGISYEACSLAGL 169 (632)
T ss_dssp TTCSSCSSCCT-TSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCT---TTCCCCEEEEEEHHHHHSHHHHHHHHHHHH
T ss_pred CCCCCCCCCCC-CCCCcccCCcchhhHHHHHHHHHHHHHhhcccccc---CCCCCeEEEEECCcchhhccHHHHHHHHHH
Confidence 99999999998 99999999999999999999999999999988873 336899999999999999999999999999
Q ss_pred cCCCcEEEEEECCCCcccccccccChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeecccccC
Q 006816 162 WKLNKLTLIYDDNHNTIDGPTSLVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRERVN 241 (630)
Q Consensus 162 ~~L~~li~i~~~N~~~i~~~~~~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~~~g 241 (630)
++|||+++|+|||+|+|+++++....+++.++|++|||+++.| ||| |+++|.+++++|++ .++|++|+|+|.||+ |
T Consensus 170 ~~L~~livi~nnN~~~i~~~~~~~~~~d~~~~~~a~G~~~~~v-dGh-d~~~l~~al~~A~~-~~~P~lI~v~T~kG~-G 245 (632)
T 3l84_A 170 HKLDNFILIYDSNNISIEGDVGLAFNENVKMRFEAQGFEVLSI-NGH-DYEEINKALEQAKK-STKPCLIIAKTTIAK-G 245 (632)
T ss_dssp TTCTTEEEEEEECSEETTEEGGGTCCCCHHHHHHHTTCEEEEE-ETT-CHHHHHHHHHHHHT-CSSCEEEEEECCTTT-T
T ss_pred cCCCcEEEEEECCCcccccchhhhcChhHHHHHHHcCCeEEEE-eeC-CHHHHHHHHHHHHh-CCCCEEEEEeeEeee-c
Confidence 9999999999999999999998777889999999999999987 999 99999999999998 799999999999998 8
Q ss_pred cccCC----------------------------CCCCChHHHHHHHHhhhhchhHHHHHHHHHHhhhhcCCchhHhHHHH
Q 006816 242 WVDRD----------------------------QFHVIPMVYREMQIQTDHGERLEKEWCSKVYNYRSKYPHEGAELDLL 293 (630)
Q Consensus 242 ~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (630)
+++.+ +|.+|+++++.|++..+++.....+|.+.+.+ +.+|+...++
T Consensus 246 ~~~~e~~~~~Hg~~l~~e~~~~~~~~l~~~~~~~f~v~~~~~~~~~~~~~~g~~~~~~w~~~~~~--~~~p~~~~~~--- 320 (632)
T 3l84_A 246 AGELEGSHKSHGAPLGEEVIKKAKEQAGFDPNISFHIPQASKIRFESAVELGDLEEAKWKDKLEK--SAKKELLERL--- 320 (632)
T ss_dssp CGGGTTCGGGSSSCCCHHHHHHHHHHHTCCTTCCSCCCHHHHHHHHTHHHHHHHHHHHHHHHHHH--SSCHHHHHHH---
T ss_pred CCCCCCcccccCCCCCHHHHHHHHHHhCCCCCCCccCChHHHHHHHHHHhhcchhHHHHHHHhhc--ccCchhhhhh---
Confidence 86322 23445555555654334555566788877665 4455554443
Q ss_pred hcCCCCCCccccCCCCCCCCCCchHHHHHHHHHHHHHHhCCCeEEEecCCCCCcccccccccCcCCCCCC-CCCcccccc
Q 006816 294 LNGGLLPGWENALPKWSTSDPLDATRGYSEKCLNQLAKVLPGLIGGSADLASSNKAYLLGYHDFSQPDSP-WGRNIRYGV 372 (630)
Q Consensus 294 ~~~~~p~~~~~~~~~~~~~~~~~~~r~a~~~~L~~l~~~~~~iv~~~aD~~~s~~~~~~~~~~f~~~~~~-p~R~~~~gI 372 (630)
+|..|...+|.|.. ..+.++|++++++|.++++.+|+++++++|+++|+++.++ + .++| |+||||+||
T Consensus 321 ----~p~~~~~~~~~~~~-~~~~a~r~a~~~~l~~l~~~~p~~v~~~aDl~~s~~~~~~----~--~~~f~p~R~~d~GI 389 (632)
T 3l84_A 321 ----LNPDFNKIAYPDFK-GKDLATRDSNGEILNVLAKNLEGFLGGSADLGPSNKTELH----S--MGDFVEGKNIHFGI 389 (632)
T ss_dssp ----HSCCSTTCCCCCCT-TCCBCHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCT----T--SCBTTTSSEEECCS
T ss_pred ----Cccchhhhcchhcc-ccchHHHHHHHHHHHHHHhhCCCEEEEecccCCccCcchh----c--ccccCCCCeEEeCc
Confidence 36677777776643 3568999999999999999999999999999988876542 2 1467 999999999
Q ss_pred chHHHHHHHHHHHhcCCCCceEeeehHHHHHhhHHHHHHhcccCCCeEEEEecCCCCCCCCCCCCCChhhhHHhhcCCCc
Q 006816 373 REHAMAGISNGVALHGGGLIPFAATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAVPRL 452 (630)
Q Consensus 373 aE~~~vg~a~GlA~~G~~~~pv~~~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~~g~~G~tHq~~~d~a~l~~iP~l 452 (630)
|||+|+++|+|||+.| |++||+++|++|++|+++|||+.|++++||+++++|+|+++|+||+|||++||+++||+||||
T Consensus 390 aE~~~v~~a~GlA~~g-G~~P~~~~f~~F~~~~~~~ir~~a~~~~pv~~~~t~~g~g~G~dG~THq~~ed~a~lr~iP~l 468 (632)
T 3l84_A 390 REHAMAAINNAFARYG-IFLPFSATFFIFSEYLKPAARIAALMKIKHFFIFTHDSIGVGEDGPTHQPIEQLSTFRAMPNF 468 (632)
T ss_dssp CHHHHHHHHHHHHHHS-SCEEEEEEEGGGHHHHHHHHHHHHHHTCCCEEEEECCSGGGCTTCGGGSCSSHHHHHHHSSSC
T ss_pred cHHHHHHHHHHHHHcC-CCEEEEEecHHHHHHHHHHHHHHhccCCCEEEEEECCCcCCCCCCCCCCCHhHHHHHhcCCCC
Confidence 9999999999999993 399999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCChHHHHHHHHHHHHcCCCcEEEEEcCCCcccccCCC--cccccccccEEEecCCCCCCCcEEEEEeCchHHHHH
Q 006816 453 LAFRPADGNETAGSYRVAIANRDVPSVIALSRQKIAANLEGT--SADEVERGGYIVSDNSSENKPEIILIGTGTELSLCE 530 (630)
Q Consensus 453 ~v~~P~d~~e~~~~l~~a~~~~~~P~~ir~~r~~~~~~~~~~--~~~~~~~G~~~~~~~~~~G~~dvtiva~G~~v~~a~ 530 (630)
+|++|+|++|++++|++|++. ++|++||++|+.. ++.. ....+..|+|++++ .+| +||||||+|+||+.|+
T Consensus 469 ~V~~P~d~~e~~~~l~~A~~~-~~Pv~ir~~r~~~---~~~~~~~~~~~~~g~~vl~~--~~g-~dvtiia~G~~v~~al 541 (632)
T 3l84_A 469 LTFRPADGVENVKAWQIALNA-DIPSAFVLSRQKL---KALNEPVFGDVKNGAYLLKE--SKE-AKFTLLASGSEVWLCL 541 (632)
T ss_dssp EEECCSSHHHHHHHHHHHHHC-SSCEEEECCSSCB---CCCCCCSBCCGGGSSEEEEC--CTT-CSEEEEECGGGHHHHH
T ss_pred EEEecCCHHHHHHHHHHHHhC-CCCEEEEEcCCCC---CCCccccccccccccEEEEe--cCC-CCEEEEEechHHHHHH
Confidence 999999999999999999996 9999999999865 2221 12345666677776 336 8999999999999999
Q ss_pred HHHHHHHhcCCceEEEEcccccccCcccHHHHhccCCCCCeeEEEEecCCcccccccccCcceEEEeccCCCCCCHHHHH
Q 006816 531 GTAKTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLPSRVVKRVSVEAGSSVGWREYVGVEGKVIGVEEFGASGAYLDTF 610 (630)
Q Consensus 531 ~aa~~L~~~gi~~~Vi~~~~i~pld~~~~~~~~~v~~~~~~~~v~vEe~~~~g~~~~~~~~~~~~g~d~f~~~g~~~~l~ 610 (630)
+|++.|+++||+++|||++|++|||+|+..+++++++ + ++ |++|++...||++++. +++|+|+|+.||+.++|+
T Consensus 542 ~Aa~~L~~~Gi~~~Vi~~~~i~PlD~~~~~~~~sv~~-~-~v-v~vE~~~~~g~~~~~~---~~iGid~Fg~sg~~~~l~ 615 (632)
T 3l84_A 542 ESANELEKQGFACNVVSMPCFELFEKQDKAYQERLLK-G-EV-IGVEAAHSNELYKFCH---KVYGIESFGESGKDKDVF 615 (632)
T ss_dssp HHHHHHHHTTCCEEEEECSBHHHHHTSCHHHHHHHCC-S-EE-EEECSSCCGGGGGTCS---EEECCCSCCCSSCHHHHH
T ss_pred HHHHHHHhcCCCeEEEecCcCCCcchhHHHHHHHhcC-C-CE-EEEeCChhhhHHHHhC---eEEEcCCCcccCCHHHHH
Confidence 9999999999999999999999999998767778887 3 55 9999999999987753 779999999999999999
Q ss_pred HHcCCChHHHHHHHHH
Q 006816 611 KKYGFTIDNVTKVARS 626 (630)
Q Consensus 611 ~~~gl~~~~I~~~i~~ 626 (630)
++||||+++|+++|++
T Consensus 616 ~~~Glt~~~I~~~i~~ 631 (632)
T 3l84_A 616 ERFGFSVSKLVNFILS 631 (632)
T ss_dssp HHTTCSHHHHHHHHTT
T ss_pred HHhCcCHHHHHHHHhh
Confidence 9999999999999864
No 6
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=100.00 E-value=2.8e-118 Score=1017.91 Aligned_cols=610 Identities=46% Similarity=0.756 Sum_probs=548.0
Q ss_pred hHHHHHhhcCCCCCCCcccHHHHHHHHHHHhhccCCCCCCCCCCCeEEecCcChhHHHHHHHHHcCCCCCCHHHHhhhhh
Q 006816 2 LIVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQYVCLHLAGFQSVQLEDLKRLCK 81 (630)
Q Consensus 2 ~~~~~~~~~~~GH~g~~ls~~~~~~~L~~~~~~~d~~~~~~~~~Dr~v~s~gH~~~~~y~~~~l~G~~~~~~~~l~~~r~ 81 (630)
++++|+.++++||+|++||++|++++||.++|++||+||+|++|||||||+||++|++|++|+++|++ ++.++|++|||
T Consensus 16 ~~~~~v~~a~~GH~g~~ls~a~~~~~L~~~~l~~~p~~p~~~~rDrfvls~GH~~~~lYa~l~l~G~~-~~~~~l~~~r~ 94 (673)
T 1r9j_A 16 LAADIVQGGKSGHPGTPMGMAPMSAVLWTEVMKYNSQDPDWVDRDRFVMSNGHGCALQYALLHMAGYN-LTMDDLKGFRQ 94 (673)
T ss_dssp HHHHHHHHHTCSCCHHHHHTHHHHHHHHHTTCCCCTTCTTCTTCCEEEESSGGGHHHHHHHHHHHTCS-CCHHHHHTTTS
T ss_pred HHHHHHHHcCCCCcchhHHHHHHHHHHHHHhhCCCCCCCCCCCCCeEEEccccHHHHHHHHHHHcCCC-CCHHHHHhhcc
Confidence 68999999999999999999999999999999999999999999999999999999999999999996 99999999999
Q ss_pred cCCCCCCCCCCCCcCcccccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHH
Q 006816 82 MGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAH 161 (630)
Q Consensus 82 ~~s~~~g~p~~~~~~~~~~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~ 161 (630)
++|.++|||++..+||+++++|+||+++|+|+|+|+|.|+++++||+++++..+++|||++|||+++||++|||+++|++
T Consensus 95 ~~s~~~ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~g~~~~d~~v~~~~GDG~~~eG~~~Eal~~A~~ 174 (673)
T 1r9j_A 95 DGSRTPGHPERFVTPGVEVTTGPLGQGIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEGVCQEALSLAGH 174 (673)
T ss_dssp TTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCeeeccCCCCCcHHHHHHHHHHHHHhhhhccccccCCCCCEEEEEECcchhcccHHHHHHHHHHH
Confidence 99999999998889999999999999999999999999999999999988888999999999999999999999999999
Q ss_pred cCCCcEEEEEECCCCcccccccccChhcHHHHHHhCCCeEEEEeCC-CCCHHHHHHHHHHHHhcCCCcEEEEEeeccccc
Q 006816 162 WKLNKLTLIYDDNHNTIDGPTSLVLSEDISARFKSLGWNTIMVENI-HDNLSSFKEALMAAANETKKPTFIRVKKMRERV 240 (630)
Q Consensus 162 ~~L~~li~i~~~N~~~i~~~~~~~~~~~~~~~~~a~G~~~~~v~dG-~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~~~ 240 (630)
++|||+++|+|||+++|++++.....+|+.++|++|||+++.++|| | |++++.+|+++|++..++|++|+++|.||+
T Consensus 175 ~~L~~li~i~d~N~~~i~~~~~~~~~~d~~~~~~a~G~~~~~~vdG~~-d~~~l~~Al~~A~~~~~~P~lI~~~T~kg~- 252 (673)
T 1r9j_A 175 LALEKLIVIYDSNYISIDGSTSLSFTEQCHQKYVAMGFHVIEVKNGDT-DYEGLRKALAEAKATKGKPKMIVQTTTIGF- 252 (673)
T ss_dssp HTCTTEEEEEEECSBCSSSBGGGTCCCCHHHHHHHTTCEEEEESCTTT-CHHHHHHHHHHHHHCCSSCEEEEEECCTTT-
T ss_pred hCCCcEEEEEECCCCccccchhhccCHhHHHHHHHCCCeEEEEeCCCC-CHHHHHHHHHHHHHcCCCCEEEEEeccccc-
Confidence 9999999999999999999988777889999999999999933499 9 999999999999854689999999999998
Q ss_pred Cccc---------------------------CCCCCCChHHHHHHHHhhhhchhHHHHHHHHHHhhhhcCCchhHhHHHH
Q 006816 241 NWVD---------------------------RDQFHVIPMVYREMQIQTDHGERLEKEWCSKVYNYRSKYPHEGAELDLL 293 (630)
Q Consensus 241 g~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (630)
|++. ..+|++|+++++.|+...+++...+++|.+.+.++....|+...++++.
T Consensus 253 G~~~~~~~~~H~~~~~~ee~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~~~P~~~~~~~~~ 332 (673)
T 1r9j_A 253 GSSKQGTEKVHGAPLGEEDIANIKAKFGRDPQKKYDVDDDVRAVFRMHIDKCSAEQKAWEELLAKYTAAFPAEGAAFVAQ 332 (673)
T ss_dssp TSTTTTSGGGTSSCCCHHHHHHHHHHTTSCSSCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred ccccCCCcccccCCCCHHHHHHHHHhcCCCCcccccCCHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhChhHHHHHHHH
Confidence 8851 1124455666666654434566677899998888888888887788888
Q ss_pred hcCCCCCCccccCCCCCCCCCCchHHHHHHHHHHHHHHhCCCeEEEecCCCCCccccccc--ccCcCCCC-CCCCCcccc
Q 006816 294 LNGGLLPGWENALPKWSTSDPLDATRGYSEKCLNQLAKVLPGLIGGSADLASSNKAYLLG--YHDFSQPD-SPWGRNIRY 370 (630)
Q Consensus 294 ~~~~~p~~~~~~~~~~~~~~~~~~~r~a~~~~L~~l~~~~~~iv~~~aD~~~s~~~~~~~--~~~f~~~~-~~p~R~~~~ 370 (630)
+.+++|..|...+|.| +++.+||++++++|.++++++|+++++++|++.|+++..++ +..| + + +||+||||+
T Consensus 333 ~~~~~p~~~~~~~p~~---~~~~a~r~a~~~~L~~l~~~~p~vv~~~aDl~~s~~~~~~~~~~~~f-~-~~~~~~R~id~ 407 (673)
T 1r9j_A 333 MRGELPSGWEAKLPTN---SSAIATRKASENCLAVLFPAIPALMGGSADLTPSNLTRPASANLVDF-S-SSSKEGRYIRF 407 (673)
T ss_dssp HTTCCCTTTGGGSCCC---CSCEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCSCGGGCCCBC-B-TTBTTCCEEEC
T ss_pred hcCCCCchhhhhcccc---ccchHHHHHHHHHHHHHHhhCCCEEEEeccccccccccccCcccccc-c-ccCCCCCeEec
Confidence 8888888887778877 35789999999999999999999999999999888765433 4568 4 5 899999999
Q ss_pred ccchHHHHHHHHHHHhcCCCCceEeeehHHHHHhhHHHHHHhcccCCCeEEEEecCCCCCCCCCCCCCChhhhHHhhcCC
Q 006816 371 GVREHAMAGISNGVALHGGGLIPFAATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAVP 450 (630)
Q Consensus 371 gIaE~~~vg~a~GlA~~G~~~~pv~~~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~~g~~G~tHq~~~d~a~l~~iP 450 (630)
||+|++|+|+|+|||++| |++||+++|++|++|+++|||++|++++||++++||+|+++|+||+|||++||+++||+||
T Consensus 408 GIaE~~~~~~a~GlA~~G-G~~P~~~~~~~F~~~~~~~ir~~a~~~~pvv~~~t~~g~g~G~dG~tHq~~edla~lr~iP 486 (673)
T 1r9j_A 408 GVREHAMCAILNGLDAHD-GIIPFGGTFLNFIGYALGAVRLAAISHHRVIYVATHDSIGVGEDGPTHQPVELVAALRAMP 486 (673)
T ss_dssp CSCHHHHHHHHHHHHHHS-SCEEEEEEEGGGGGGGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHHST
T ss_pred CccHHHHHHHHHHHHhcC-CCEEEEEehHHHHHHHHHHHHHHHhcCCCEEEEEECCccCcCCCCcccCCHHHHHHHcCCC
Confidence 999999999999999995 4999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecCChHHHHHHHHHHHHcCCCcEEEEEcCCCcccccCCCcccccccccEEEecCCCCCCCcEEEEEeCchHHHHH
Q 006816 451 RLLAFRPADGNETAGSYRVAIANRDVPSVIALSRQKIAANLEGTSADEVERGGYIVSDNSSENKPEIILIGTGTELSLCE 530 (630)
Q Consensus 451 ~l~v~~P~d~~e~~~~l~~a~~~~~~P~~ir~~r~~~~~~~~~~~~~~~~~G~~~~~~~~~~G~~dvtiva~G~~v~~a~ 530 (630)
||+|++|+|++|++.+|++|++..++|++||++|++. +.++......+++|+|++++ . +++|||||++|+++++|+
T Consensus 487 ~l~V~~Pad~~e~~~~l~~a~~~~~~Pv~i~~~r~~~-~~~~~~~~~~~~~Ga~vl~~--g-~~~dv~lia~G~~v~~al 562 (673)
T 1r9j_A 487 NLQVIRPSDQTETSGAWAVALSSIHTPTVLCLSRQNT-EPQSGSSIEGVRHGAYSVVD--V-PDLQLVIVASGSEVSLAV 562 (673)
T ss_dssp TCEEECCSSHHHHHHHHHHHHHCTTCCEEEECCSSEE-CCCTTCCHHHHHTSCEEEEC--C-TTCSEEEEECGGGHHHHH
T ss_pred CCEEEeCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCC-CCCCCcccccccCCCEEEee--C-CCCCEEEEEechhHHHHH
Confidence 9999999999999999999999668999999999988 76654332357889887776 2 237999999999999999
Q ss_pred HHHHHHHhcCCceEEEEcccccccCcccHHHHhccCCCCCeeEEEEecCCcccccccccCcceEEEeccCCCCCCHHHHH
Q 006816 531 GTAKTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLPSRVVKRVSVEAGSSVGWREYVGVEGKVIGVEEFGASGAYLDTF 610 (630)
Q Consensus 531 ~aa~~L~~~gi~~~Vi~~~~i~pld~~~~~~~~~v~~~~~~~~v~vEe~~~~g~~~~~~~~~~~~g~d~f~~~g~~~~l~ 610 (630)
+|++.|+++ |+++|||++|++|||+++..|+.+++++..++ |++|++...||+.++. . ++|+|.|+.+|+.++|+
T Consensus 563 ~Aa~~L~~~-i~~~Vv~~~sl~pld~~~~~~i~~~~~~~~~v-v~vE~~~~~g~~~~v~--~-~~g~d~f~~sg~~~~L~ 637 (673)
T 1r9j_A 563 DAAKALSGE-LRVRVVSMPCQELFDAQPDTYRQAVLPAGVPV-VSVEAYVSFGWEKYSH--A-HVGMSGFGASAPAGVLY 637 (673)
T ss_dssp HHHHHHTTT-CCEEEEECSCHHHHHTSCHHHHHHHSCTTSCE-EEECSSCCTTGGGTCS--E-EESCSSCCCSSCHHHHH
T ss_pred HHHHHHHhc-CCEEEEeCCCCchhhcccHHHHHHHhccCCeE-EEEeCCCccchHHhcC--c-eEEeccCCCCCCHHHHH
Confidence 999999988 99999999999999999866656666655565 9999999988877652 3 38899999999999999
Q ss_pred HHcCCChHHHHHHHHHhhh
Q 006816 611 KKYGFTIDNVTKVARSLLS 629 (630)
Q Consensus 611 ~~~gl~~~~I~~~i~~~l~ 629 (630)
++||+|+++|+++|+++++
T Consensus 638 ~~~g~~~~~I~~~i~~~l~ 656 (673)
T 1r9j_A 638 KKFGITVEEVVRTGRELAK 656 (673)
T ss_dssp HHTTCSHHHHHHHHHHHHH
T ss_pred HHHCcCHHHHHHHHHHHHH
Confidence 9999999999999999874
No 7
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=100.00 E-value=1.3e-117 Score=1013.69 Aligned_cols=619 Identities=55% Similarity=0.958 Sum_probs=550.3
Q ss_pred hHHHHHhhcCCCCCCCcccHHHHHHHHHHHhhccCCCCCCCCCCCeEEecCcChhHHHHHHHHHcCCCCCCHHHHhhhhh
Q 006816 2 LIVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQYVCLHLAGFQSVQLEDLKRLCK 81 (630)
Q Consensus 2 ~~~~~~~~~~~GH~g~~ls~~~~~~~L~~~~~~~d~~~~~~~~~Dr~v~s~gH~~~~~y~~~~l~G~~~~~~~~l~~~r~ 81 (630)
++++|+.++++||+|++||++||+++||..+|+|||+||+|++|||||||+||++|++|++++++|+.+++.++|++|||
T Consensus 26 ~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~~~~~p~~p~~~~rDr~vls~GH~~~~lYa~l~l~G~~~~~~~~l~~~r~ 105 (675)
T 1itz_A 26 LAIDAVEKANSGHPGLPMGCAPMGHVLYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVKEEDLKQFRQ 105 (675)
T ss_dssp HHHHHHHHHTCSCCHHHHHHHHHHHHHHHHTCCCCTTCTTCTTCCEEEESSGGGHHHHHHHHHHHTCTTCCHHHHTTTTS
T ss_pred HHHHHHHHcCCCccCccHhHHHHHHHHHHHHhcCCcCCCCCCCCCeEEEcCcchHHHHHHHHHHcCCCCCCHHHHHhccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999983389999999999
Q ss_pred cCCCCCCCCCCCCcCcccccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHH
Q 006816 82 MGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAH 161 (630)
Q Consensus 82 ~~s~~~g~p~~~~~~~~~~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~ 161 (630)
++|.++|||++.++|++++++|+||+++|+|+|+|+|.|+++++||+++++.++++|||++|||+++||++|||+++|++
T Consensus 106 ~~~~~~ghp~~~~~~~~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~i~GDG~~~eG~~~Eal~~A~~ 185 (675)
T 1itz_A 106 WGSRTPGHPENFETPGVEVTTGPLGQGIANAVGLALAEKHLAARFNKPDSEIVDHYTYVILGDGCQMEGIANEACSLAGH 185 (675)
T ss_dssp TTCSSCSSCCTTTCTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCeeECCccHHhHHHHHHHHHHHhhhhcccccccccCCCCCEEEEEECHhHhchhHHHHHHHHHHH
Confidence 99999999998889999999999999999999999999999999999988888999999999999999999999999999
Q ss_pred cCCCcEEEEEECCCCcccccccccChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeecccccC
Q 006816 162 WKLNKLTLIYDDNHNTIDGPTSLVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRERVN 241 (630)
Q Consensus 162 ~~L~~li~i~~~N~~~i~~~~~~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~~~g 241 (630)
++|+|+++|+|||+|+|++++.....+++.++|++|||+++..+|||+|+++|.+++++|++..++|++|+++|.|++ |
T Consensus 186 ~~L~~li~i~~nN~~~i~~~~~~~~~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~al~~a~~~~~~P~lI~~~T~kg~-G 264 (675)
T 1itz_A 186 WGLGKLIAFYDDNHISIDGDTEIAFTEDVSTRFEALGWHTIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIKVTTTIGF-G 264 (675)
T ss_dssp TTCTTEEEEEEECSEETTEEGGGTCCSCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHHCCSSCEEEEEECCTTT-T
T ss_pred hCCCcEEEEEECCCccCCCChhhhcChhHHHHHHhCCCEEEEEecCCCCHHHHHHHHHHHHHCCCCeEEEEEeeeccc-C
Confidence 999999999999999999998876788999999999999993349966899999999999863589999999999999 9
Q ss_pred cccCCC----CC--CChHHHHHHHHh---------------------hhhchhHHHHHHHHHHhhhhcCCchhHhHHHHh
Q 006816 242 WVDRDQ----FH--VIPMVYREMQIQ---------------------TDHGERLEKEWCSKVYNYRSKYPHEGAELDLLL 294 (630)
Q Consensus 242 ~~~~~~----~~--~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (630)
+++.++ |. ++++.++.+++. ..++.....+|.+.+.++...+|+...++++.+
T Consensus 265 ~~~~~~~~~~H~~~~~~e~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 344 (675)
T 1itz_A 265 SPNKANSYSVHGSALGAKEVEATRQNLGWPYDTFFVPEDVKSHWSRHTPEGAALEADWNAKFAEYEKKYADDAATLKSII 344 (675)
T ss_dssp CTTTTTSGGGTSSCCCHHHHHHHHHHHTCCCCTTCCCHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred cccccCcccccCCCCCHHHHHHHHHHcCCCcccccCChhHHHHHHHHHhhhhhhHHHHHHHHHHhhhhChHHHHHHHHHh
Confidence 864331 22 223333333322 122333456888888777777788777788888
Q ss_pred cCCCCCCccccCCCCCCCCCCchHHHHHHHHHHHHHHhCCCeEEEecCCCCCcccccccccCcCCCC-CCCCCccccccc
Q 006816 295 NGGLLPGWENALPKWSTSDPLDATRGYSEKCLNQLAKVLPGLIGGSADLASSNKAYLLGYHDFSQPD-SPWGRNIRYGVR 373 (630)
Q Consensus 295 ~~~~p~~~~~~~~~~~~~~~~~~~r~a~~~~L~~l~~~~~~iv~~~aD~~~s~~~~~~~~~~f~~~~-~~p~R~~~~gIa 373 (630)
++++|..|...+|.|...+++.+||++++++|.++++++|+++++++|++.|+++..+++..| + + +||+||||+||+
T Consensus 345 ~~~~p~~~~~~~~~~~~~~~~~a~r~a~~~~L~~i~~~~p~v~~~~aDl~~s~~~~~~g~~~f-~-~~~~~~R~id~gIa 422 (675)
T 1itz_A 345 TGELPTGWVDALPKYTPESPGDATRNLSQQCLNALANVVPGLIGGSADLASSNMTLLKMFGDF-Q-KDTAEERNVRFGVR 422 (675)
T ss_dssp HCCCCTTGGGGSCCCCTTSCCBCHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTCCBC-C-TTCTTCCBCCCCSC
T ss_pred cccCCchhhhhhhhhccCCcchHHHHHHHHHHHHHHHhCCCEEEEeccccccccccccccccc-c-ccCCCCCeEeeccc
Confidence 888888888788887433467899999999999999999999999999998888766666678 4 5 899999999999
Q ss_pred hHHHHHHHHHHHhcCCCCceEeeehHHHHHhhHHHHHHhcccCCCeEEEEecCCCCCCCCCCCCCChhhhHHhhcCCCcE
Q 006816 374 EHAMAGISNGVALHGGGLIPFAATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAVPRLL 453 (630)
Q Consensus 374 E~~~vg~a~GlA~~G~~~~pv~~~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~~g~~G~tHq~~~d~a~l~~iP~l~ 453 (630)
||+|+++|+|||++|.+++||+++|++|++|+++|||+.|++++||+++++|+|+++|+||+|||++||+++||+||||+
T Consensus 423 E~~~v~~a~GlA~~G~~~~P~~~t~~~F~~~~~~~ir~~a~~~lpvv~~~t~~g~g~G~dG~tHq~~edla~lr~iP~l~ 502 (675)
T 1itz_A 423 EHGMGAICNGIALHSPGFVPYCATFFVFTDYMRGAMRISALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLVSFRAMPNIL 502 (675)
T ss_dssp HHHHHHHHHHHHTTCTTCEEEEEEEGGGHHHHHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHSSSSCE
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEEHHHHHHHHHHHHHHHHhcCCCEEEEEECCccccCCCCCCcCcHHHHHHhccCCCeE
Confidence 99999999999999756999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCChHHHHHHHHHHHHcCCCcEEEEEcCCCcccccCCCcccccccccEEEecCCCCC-CCcEEEEEeCchHHHHHHH
Q 006816 454 AFRPADGNETAGSYRVAIANRDVPSVIALSRQKIAANLEGTSADEVERGGYIVSDNSSEN-KPEIILIGTGTELSLCEGT 532 (630)
Q Consensus 454 v~~P~d~~e~~~~l~~a~~~~~~P~~ir~~r~~~~~~~~~~~~~~~~~G~~~~~~~~~~G-~~dvtiva~G~~v~~a~~a 532 (630)
|++|+|++|++.+|++|++..++|++||++|+.+ |.++......+++|+|++++. +.| ++|||||++|+++++|++|
T Consensus 503 V~~Pad~~e~~~~l~~a~~~~~~Pv~i~~~r~~~-p~~~~~~~~~~~~Ga~vl~~~-~~G~~~dv~iva~G~~v~~al~A 580 (675)
T 1itz_A 503 MLRPADGNETAGAYKVAVLNRKRPSILALSRQKL-PHLPGTSIEGVEKGGYTISDN-STGNKPDLIVMGTGSELEIAAKA 580 (675)
T ss_dssp EECCCSHHHHHHHHHHHHHCTTSCEEEEECSSCB-CCCTTCCHHHHTTSSEEEEEC-CSTTCCSEEEEECGGGHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHhCCCcEEEEecCCCC-CCCCCccccccccCCEEEecc-cCCCCCCEEEEEECHHHHHHHHH
Confidence 9999999999999999999668999999999988 766553323578898887762 102 3799999999999999999
Q ss_pred HHHHHhcCCceEEEEcccccccCcccHHHHhccCCCC-CeeEEEEecCCcccccccccCcceEEEeccCCCCCCHHHHHH
Q 006816 533 AKTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLPSR-VVKRVSVEAGSSVGWREYVGVEGKVIGVEEFGASGAYLDTFK 611 (630)
Q Consensus 533 a~~L~~~gi~~~Vi~~~~i~pld~~~~~~~~~v~~~~-~~~~v~vEe~~~~g~~~~~~~~~~~~g~d~f~~~g~~~~l~~ 611 (630)
++.|+++||+++|||++|++|||+|+..|+.++++++ .++ |++|++...||+++++.+++++|+|.|+.+|+.++|++
T Consensus 581 a~~L~~~Gi~v~Vv~~~~~~pld~~~~~~~~~v~~~~~~~v-v~vE~~~~~G~~~~~~~~~~~ig~d~fg~sg~~~~l~~ 659 (675)
T 1itz_A 581 ADELRKEGKTVRVVSFVSWELFDEQSDEYKESVLPAAVTAR-ISIEAGSTLGWQKYVGAQGKAIGIDKFGASAPAGTIYK 659 (675)
T ss_dssp HHHHHHTTCCEEEEECSCHHHHHTSCHHHHHHHSCTTCCCE-EEECSSCCTTTHHHHCSSCEEECCCSCCCSSCHHHHHH
T ss_pred HHHHHhcCCcEEEEEeccCcccccchHHHHHHHhccCCceE-EEEECCccccHHHhcCCCceEEEeCCCCCCCCHHHHHH
Confidence 9999999999999999999999999866667898875 345 99999999889888777788999999999999999999
Q ss_pred HcCCChHHHHHHHHH
Q 006816 612 KYGFTIDNVTKVARS 626 (630)
Q Consensus 612 ~~gl~~~~I~~~i~~ 626 (630)
+||||+++|+++|++
T Consensus 660 ~~gl~~~~I~~~i~~ 674 (675)
T 1itz_A 660 EYGITVESIIAAAKS 674 (675)
T ss_dssp HHTCSHHHHHHHHTT
T ss_pred HHCcCHHHHHHHHHh
Confidence 999999999999875
No 8
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=100.00 E-value=9.5e-118 Score=1015.03 Aligned_cols=617 Identities=42% Similarity=0.728 Sum_probs=547.9
Q ss_pred hHHHHHhhcCCCCCCCcccHHHHHHHHHHHhhccCCCCCCCCCCCeEEecCcChhHHHHHHHHHcCCCCCCHHHHhhhhh
Q 006816 2 LIVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQYVCLHLAGFQSVQLEDLKRLCK 81 (630)
Q Consensus 2 ~~~~~~~~~~~GH~g~~ls~~~~~~~L~~~~~~~d~~~~~~~~~Dr~v~s~gH~~~~~y~~~~l~G~~~~~~~~l~~~r~ 81 (630)
++++|+.++++||+|++||++|++++||.++|+|||+||+|++|||||+|+||++|++|++++++|++ ++.++|++|||
T Consensus 14 ~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~~~~lYa~~~l~G~~-~~~~~l~~~r~ 92 (669)
T 2r8o_A 14 LSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLKHNPQNPSWADRDRFVLSNGHGSMLIYSLLHLTGYD-LPMEELKNFRQ 92 (669)
T ss_dssp HHHHHHHHHTCSCCHHHHHHHHHHHHHHHHTCCCCTTCTTCTTCCEEEESSGGGHHHHHHHHHHHTCS-CCHHHHTTTTS
T ss_pred HHHHHHHHcCCCccCCchhHHHHHHHHHHHhhcCCcCCCCCCCCCeEEEeCccHHHHHHHHHHHcCCC-CCHHHHHHhhc
Confidence 68999999999999999999999999999899999999999999999999999999999999999997 99999999999
Q ss_pred cCCCCCCCCCCCCcCcccccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHH
Q 006816 82 MGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAH 161 (630)
Q Consensus 82 ~~s~~~g~p~~~~~~~~~~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~ 161 (630)
++|.++|||++.++|++++++|+||+++|+|+|+|+|.++++++||+++.+..+++|||++|||+++||++|||+++|++
T Consensus 93 ~~~~~~ghp~~~~~~g~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~~~GDG~~~eG~~~Eal~~A~~ 172 (669)
T 2r8o_A 93 LHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGT 172 (669)
T ss_dssp TTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHH
T ss_pred CCCCCCCCCCccCCCCcccccccccchHHHHHHHHHHHHHhccccccCccCCcCCeEEEEECHhHhcchHHHHHHHHHHH
Confidence 99999999998889999999999999999999999999999999998877667899999999999999999999999999
Q ss_pred cCCCcEEEEEECCCCcccccccccChhcHHHHHHhCCCeEE-EEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeeccccc
Q 006816 162 WKLNKLTLIYDDNHNTIDGPTSLVLSEDISARFKSLGWNTI-MVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRERV 240 (630)
Q Consensus 162 ~~L~~li~i~~~N~~~i~~~~~~~~~~~~~~~~~a~G~~~~-~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~~~ 240 (630)
++|||+++|+|||+|+|++++.....+++.++|++|||+++ .| ||| |+++|.+++++|++..++|++|+++|.|++
T Consensus 173 ~~L~~li~i~~nN~~~i~~~~~~~~~~d~~~~~~a~G~~~~~~v-dG~-d~~~l~~al~~a~~~~~~P~lI~~~T~kg~- 249 (669)
T 2r8o_A 173 LKLGKLIAFYDDNGISIDGHVEGWFTDDTAMRFEAYGWHVIRDI-DGH-DAASIKRAVEEARAVTDKPSLLMCKTIIGF- 249 (669)
T ss_dssp TTCTTEEEEEEECSEETTEEGGGTCCCCHHHHHHHTTCEEEEEE-ETT-CHHHHHHHHHHHHHCCSSCEEEEEECCTTT-
T ss_pred cCCCcEEEEEECCCcEeccccccccCccHHHHHHHCCCeEEeEE-CCC-CHHHHHHHHHHHHhcCCCCEEEEEEeEecc-
Confidence 99999999999999999998876677899999999999999 76 999 999999999999863579999999999999
Q ss_pred Cccc-CC-----CCCCChHHHHHHHHhh--------------------hhchhHHHHHHHHHHhhhhcCCchhHhHHHHh
Q 006816 241 NWVD-RD-----QFHVIPMVYREMQIQT--------------------DHGERLEKEWCSKVYNYRSKYPHEGAELDLLL 294 (630)
Q Consensus 241 g~~~-~~-----~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (630)
|+++ .+ .-++++++++.+++.. +++.....+|.+.+.++...+|+...++.+.+
T Consensus 250 G~~~~~~~~~~H~~~~~~ee~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 329 (669)
T 2r8o_A 250 GSPNKAGTHDSHGAPLGDAEIALTREQLGWKYAPFEIPSEIYAQWDAKEAGQAKESAWNEKFAAYAKAYPQEAAEFTRRM 329 (669)
T ss_dssp TCTTTTTSGGGTSSCCCHHHHHHHHHHHTCCCCTTCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred CcCCcCCCCcccCCCCCHHHHHHHHHHcCCCcccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhChHHHHHHHHHh
Confidence 9863 22 1234555555555432 11233456898888888888888887887777
Q ss_pred cCCCCCCccccCCCC----CCCCCCchHHHHHHHHHHHHHHhCCCeEEEecCCCCCcccccccccCcCCCCCCCCCcccc
Q 006816 295 NGGLLPGWENALPKW----STSDPLDATRGYSEKCLNQLAKVLPGLIGGSADLASSNKAYLLGYHDFSQPDSPWGRNIRY 370 (630)
Q Consensus 295 ~~~~p~~~~~~~~~~----~~~~~~~~~r~a~~~~L~~l~~~~~~iv~~~aD~~~s~~~~~~~~~~f~~~~~~p~R~~~~ 370 (630)
++.+|..|...+|.| ...+++++||++++++|.++++.+|+++++++|++.|+++.+++++.| + ++||+||||+
T Consensus 330 ~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~a~~~~L~~l~~~~p~v~~~~aDl~~s~~~~~~~~~~f-~-~~~p~R~id~ 407 (669)
T 2r8o_A 330 KGEMPSDFDAKAKEFIAKLQANPAKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAI-N-EDAAGNYIHY 407 (669)
T ss_dssp HTCCCTTHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCCCTTCCBT-T-TCTTCSEEEC
T ss_pred cccCChhhhhhhHHHhhhhcCCCccHHHHHHHHHHHHHHHhhCCCeEEecCcccccccccccccccc-c-ccCCCCeeec
Confidence 777886665444444 123457899999999999999999999999999999888776777789 5 6899999999
Q ss_pred ccchHHHHHHHHHHHhcCCCCceEeeehHHHHHhhHHHHHHhcccCCCeEEEEecCCCCCCCCCCCCCChhhhHHhhcCC
Q 006816 371 GVREHAMAGISNGVALHGGGLIPFAATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAVP 450 (630)
Q Consensus 371 gIaE~~~vg~a~GlA~~G~~~~pv~~~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~~g~~G~tHq~~~d~a~l~~iP 450 (630)
||+||+|+++|+|||+.| |++||+.+|++|++|+++|||++|++++||+++++|+|+++|+||+|||++||+++||++|
T Consensus 408 GIaE~~~v~~a~GlA~~g-G~~P~~~tf~~F~~~~~~~ir~~a~~~lpvv~~~t~~g~~~G~dG~tHq~~edla~lr~iP 486 (669)
T 2r8o_A 408 GVREFGMTAIANGISLHG-GFLPYTSTFLMFVEYARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTP 486 (669)
T ss_dssp CSCHHHHHHHHHHHHHHS-SCEEEEEEEGGGGGTTHHHHHHHHHTTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTST
T ss_pred chhHHHHHHHHHHHHHcC-CCeEEEeehHHHHHHHHHHHHHHHhcCCCEEEEEeCCCcCcCCCCCccCCHHHHHHhcCCC
Confidence 999999999999999994 4999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecCChHHHHHHHHHHHHcCCCcEEEEEcCCCcccccCCCc--ccccccccEEEecCCCCCCCcEEEEEeCchHHH
Q 006816 451 RLLAFRPADGNETAGSYRVAIANRDVPSVIALSRQKIAANLEGTS--ADEVERGGYIVSDNSSENKPEIILIGTGTELSL 528 (630)
Q Consensus 451 ~l~v~~P~d~~e~~~~l~~a~~~~~~P~~ir~~r~~~~~~~~~~~--~~~~~~G~~~~~~~~~~G~~dvtiva~G~~v~~ 528 (630)
||+|++|+|++|++.+|++|++..++|++||++|+.. +.++... ...+++|+|++++ ..|++|||||++|+++++
T Consensus 487 ~l~V~~Pad~~E~~~~l~~a~~~~~~Pv~i~~~r~~~-~~~~~~~~~~~~~~~G~~vl~~--~~g~~dv~iva~G~~v~~ 563 (669)
T 2r8o_A 487 NMSTWRPCDQVESAVAWKYGVERQDGPTALILSRQNL-AQQERTEEQLANIARGGYVLKD--CAGQPELIFIATGSEVEL 563 (669)
T ss_dssp TCEEECCSSHHHHHHHHHHHHHCSSSCEEEECCSSEE-CCCCCCHHHHHHGGGSCEEEEC--CSSSCSEEEEECGGGHHH
T ss_pred CCEEEecCCHHHHHHHHHHHHHhCCCcEEEEeCCCCC-CCCCCccchhhhccCCCEEEec--cCCCCCEEEEEECHHHHH
Confidence 9999999999999999999999668999999999988 7665432 1237789887765 213379999999999999
Q ss_pred HHHHHHHHHhcCCceEEEEcccccccCcccHHHHhccCCCC-CeeEEEEecCCcccccccccCcceEEEeccCCCCCCHH
Q 006816 529 CEGTAKTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLPSR-VVKRVSVEAGSSVGWREYVGVEGKVIGVEEFGASGAYL 607 (630)
Q Consensus 529 a~~aa~~L~~~gi~~~Vi~~~~i~pld~~~~~~~~~v~~~~-~~~~v~vEe~~~~g~~~~~~~~~~~~g~d~f~~~g~~~ 607 (630)
|++|++.|+++||+++|||++|++|||+++..++.++++++ .++ |++|++...||++++.....++|+|.|+.+|+.+
T Consensus 564 al~Aa~~L~~~Gi~~~Vv~~~~~~pld~~~~~~~~~v~~~~~~~v-v~vE~~~~~g~~~~~~~~~~~ig~d~fg~sg~~~ 642 (669)
T 2r8o_A 564 AVAAYEKLTAEGVKARVVSMPSTDAFDKQDAAYRESVLPKAVTAR-VAVEAGIADYWYKYVGLNGAIVGMTTFGESAPAE 642 (669)
T ss_dssp HHHHHHHHHHHTCCEEEEECSCHHHHHTSCHHHHHHHSCTTCCCE-EEEEEEEGGGGHHHHTTSSEEEEECSCCCSSCHH
T ss_pred HHHHHHHHHhcCCCeEEEEeccCCccccchHHHHHHhccccCceE-EEEeCCchhhHHHHhcCCCeEEEcCCCCCcCCHH
Confidence 99999999999999999999999999999876777888875 345 9999999888988876666789999999999999
Q ss_pred HHHHHcCCChHHHHHHHHHhhh
Q 006816 608 DTFKKYGFTIDNVTKVARSLLS 629 (630)
Q Consensus 608 ~l~~~~gl~~~~I~~~i~~~l~ 629 (630)
+|+++||||+++|+++|+++|.
T Consensus 643 ~l~~~~Gl~~~~I~~~~~~~~~ 664 (669)
T 2r8o_A 643 LLFEEFGFTVDNVVAKAKELLH 664 (669)
T ss_dssp HHHHHTTCSHHHHHHHHHHHC-
T ss_pred HHHHHhCCCHHHHHHHHHHHHh
Confidence 9999999999999999999875
No 9
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=100.00 E-value=5.3e-117 Score=1009.54 Aligned_cols=612 Identities=44% Similarity=0.754 Sum_probs=545.7
Q ss_pred hHHHHHhhcCCCCCCCcccHHHHHHHHHHHhhccCCCCCCCCCCCeEEecCcChhHHHHHHHHHcCCCCCCHHHHhhhhh
Q 006816 2 LIVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQYVCLHLAGFQSVQLEDLKRLCK 81 (630)
Q Consensus 2 ~~~~~~~~~~~GH~g~~ls~~~~~~~L~~~~~~~d~~~~~~~~~Dr~v~s~gH~~~~~y~~~~l~G~~~~~~~~l~~~r~ 81 (630)
++++|+.++++||+|++||++|++++||+. |+|||+||+|++|||||||+||++|++|++++++|++ ++.++|++|||
T Consensus 18 ~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~-~~~~~~~p~~~~rDr~v~s~GH~~~~lYa~~~l~G~~-~~~~~l~~~r~ 95 (680)
T 1gpu_A 18 LAVDTVSKANSGHPGAPLGMAPAAHVLWSQ-MRMNPTNPDWINRDRFVLSNGHAVALLYSMLHLTGYD-LSIEDLKQFRQ 95 (680)
T ss_dssp HHHHHHHHHTCSCCHHHHHHHHHHHHHHHT-CCCCTTCTTCTTCCEEEESSGGGHHHHHHHHHHTTCS-CCHHHHTTTTC
T ss_pred HHHHHHHHcCCCccCCchhHHHHHHHHHHh-CCCCccCCCCCCCCEEEEecchHHHHHHHHHHHhCCC-CCHHHHHhhcc
Confidence 689999999999999999999999999999 9999999999999999999999999999999999996 99999999999
Q ss_pred cCCCCCCCCCCCCcCcccccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHH
Q 006816 82 MGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAH 161 (630)
Q Consensus 82 ~~s~~~g~p~~~~~~~~~~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~ 161 (630)
++|.++|||++ .+||+++++|+||+++|+|+|+|+|.++++++||+++.+..+++|||++|||+++||++|||+++|++
T Consensus 96 ~g~~~~ghp~~-~~~g~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~vv~i~GDG~~~eG~~~Eal~~A~~ 174 (680)
T 1gpu_A 96 LGSRTPGHPEF-ELPGVEVTTGPLGQGISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGH 174 (680)
T ss_dssp TTCSCCSSCCT-TSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHH
T ss_pred cCCCCCCCCCc-cCCCeeeccccccchHHHHHHHHHHHHHhccccccCccCCCCCeEEEEECCCccchhhHHHHHHHHHH
Confidence 99999999997 89999999999999999999999999999999998877667999999999999999999999999999
Q ss_pred cCCCcEEEEEECCCCcccccccccChhcHHHHHHhCCCeEE-EEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeeccccc
Q 006816 162 WKLNKLTLIYDDNHNTIDGPTSLVLSEDISARFKSLGWNTI-MVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRERV 240 (630)
Q Consensus 162 ~~L~~li~i~~~N~~~i~~~~~~~~~~~~~~~~~a~G~~~~-~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~~~ 240 (630)
++|||+++|+|||+|+|++++.....+++.++|++|||+++ .| |||.|++++.+++++|++..++|++|+++|.|++
T Consensus 175 ~~L~~li~i~~nN~~~i~~~~~~~~~~d~~~~~~a~G~~~~~~v-dG~~d~~~l~~al~~A~~~~~~P~lI~~~T~kg~- 252 (680)
T 1gpu_A 175 LKLGNLIAIYDDNKITIDGATSISFDEDVAKRYEAYGWEVLYVE-NGNEDLAGIAKAIAQAKLSKDKPTLIKMTTTIGY- 252 (680)
T ss_dssp TTCTTEEEEEEECSEETTEEGGGTCCCCHHHHHHHHTCEEEEES-CTTTCHHHHHHHHHHHHHCTTSCEEEEEECCTTT-
T ss_pred hCCCcEEEEEECCCceEecccccccCccHHHHHHhcCCeEEEEe-cCCCCHHHHHHHHHHHHHCCCCCEEEEEEeeccc-
Confidence 99999999999999999998886677899999999999999 66 9966899999999999863579999999999999
Q ss_pred CcccCC-----CCCCChHHHHHHHHhh-----------------------hhchhHHHHHHHHHHhhhhcCCchhHhHHH
Q 006816 241 NWVDRD-----QFHVIPMVYREMQIQT-----------------------DHGERLEKEWCSKVYNYRSKYPHEGAELDL 292 (630)
Q Consensus 241 g~~~~~-----~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (630)
|++..+ .-++++++++.|++.. .++.....+|.+.+.++...+|+...++++
T Consensus 253 G~~~~~~~~~H~~~~~~ee~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~a~~~~~ 332 (680)
T 1gpu_A 253 GSLHAGSHSVHGAPLKADDVKQLKSKFGFNPDKSFVVPQEVYDHYQKTILKPGVEANNKWNKLFSEYQKKFPELGAELAR 332 (680)
T ss_dssp TSTTTTSGGGSSSCCCHHHHHHHHHHTTCCTTCCSCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred ccccCCCCccCCCCCCHHHHHHHHHHcCCCcCCCccCCHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhChHHHHHHHH
Confidence 986322 1223445555554432 122334567888887777777888777888
Q ss_pred HhcCCCCCCccccCCCCCCCCCCchHHHHHHHHHHHHHHhCCCeEEEecCCCCCcccccccccCcCCCC------CCCCC
Q 006816 293 LLNGGLLPGWENALPKWSTSDPLDATRGYSEKCLNQLAKVLPGLIGGSADLASSNKAYLLGYHDFSQPD------SPWGR 366 (630)
Q Consensus 293 ~~~~~~p~~~~~~~~~~~~~~~~~~~r~a~~~~L~~l~~~~~~iv~~~aD~~~s~~~~~~~~~~f~~~~------~~p~R 366 (630)
.+++++|..|...+|.|...+++.+||++++++|.++++.+|+++++++|++.|+++.+++++.| + + +||+|
T Consensus 333 ~~~~~~p~~~~~~~~~~~~~~~~~a~r~a~~~~L~~~~~~~p~v~~~~aDl~~s~~~~~~g~~~f-~-~~~~~~~~~p~R 410 (680)
T 1gpu_A 333 RLSGQLPANWESKLPTYTAKDSAVATRKLSETVLEDVYNQLPELIGGSADLTPSNLTRWKEALDF-Q-PPSSGSGNYSGR 410 (680)
T ss_dssp HHTTCCCTTGGGGSCCCCTTSCCBCHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCSCTTCCEE-C-CTTTSSEETTCC
T ss_pred HhcccCCchhhhhchhhccCCcchHHHHHHHHHHHHHHhhCCCEEEEeccccccccccccccccc-c-cccccccCCCCc
Confidence 88888898887778877433467899999999999999999999999999998887766666678 4 5 89999
Q ss_pred ccccccchHHHHHHHHHHHhcCCCCc-eEeeehHHHHHhhHHHHHHhcccCCCeEEEEecCCCCCCCCCCCCCChhhhHH
Q 006816 367 NIRYGVREHAMAGISNGVALHGGGLI-PFAATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQLAG 445 (630)
Q Consensus 367 ~~~~gIaE~~~vg~a~GlA~~G~~~~-pv~~~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~~g~~G~tHq~~~d~a~ 445 (630)
|||+||+||+|+|+|+|||++| |++ ||+++|++|++|+++|||+.|++++||++++||+|+++|+||+|||++||+++
T Consensus 411 ~~d~gIaE~~~vg~a~GlA~~G-g~~~P~~~~f~~F~~~~~~air~~a~~~lpvv~v~t~~g~g~G~dG~tHq~~edla~ 489 (680)
T 1gpu_A 411 YIRYGIREHAMGAIMNGISAFG-ANYKPYGGTFLNFVSYAAGAVRLSALSGHPVIWVATHDSIGVGEDGPTHQPIETLAH 489 (680)
T ss_dssp EEECCSCHHHHHHHHHHHHHHC-TTCEEEEEEEHHHHGGGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHH
T ss_pred eecCCccHHHHHHHHHHHHhcC-CCceEEEeehHHHHHHHHHHHHHHHhcCCCEEEEEeCCccccCCCCCccCCHHHHHH
Confidence 9999999999999999999997 699 99999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCcEEEecCChHHHHHHHHHHHHcCCCcEEEEEcCCCcccccCCCcccccccccEEEecCCCCCCCcEEEEEeCch
Q 006816 446 LRAVPRLLAFRPADGNETAGSYRVAIANRDVPSVIALSRQKIAANLEGTSADEVERGGYIVSDNSSENKPEIILIGTGTE 525 (630)
Q Consensus 446 l~~iP~l~v~~P~d~~e~~~~l~~a~~~~~~P~~ir~~r~~~~~~~~~~~~~~~~~G~~~~~~~~~~G~~dvtiva~G~~ 525 (630)
||+||||+|++|+|++|++.+|++|+++.++|++||++|+.+ |.++.+....+++|+|++++ . +++||||||+|++
T Consensus 490 lr~iP~l~V~~Pad~~e~~~~l~~A~~~~~~Pv~i~~~r~~~-~~~~~~~~~~~~~G~~vl~~--g-~~~dvtiva~G~~ 565 (680)
T 1gpu_A 490 FRSLPNIQVWRPADGNEVSAAYKNSLESKHTPSIIALSRQNL-PQLEGSSIESASKGGYVLQD--V-ANPDIILVATGSE 565 (680)
T ss_dssp HHTSSSCEEECCCSHHHHHHHHHHHHHCSSCCEEEECCSSCB-CCCTTCCHHHHTTSCEEEEC--C-SSCSEEEEECTHH
T ss_pred hcCCCCCEEEecCCHHHHHHHHHHHHHhCCCcEEEEecCCCC-CCCCCcchhhccCCCEEEec--C-CCCCEEEEEEcHH
Confidence 999999999999999999999999999668999999999988 77664333337889888776 2 2379999999999
Q ss_pred HHHHHHHHHHHHhcCCceEEEEcccccccCcccHHHHhccCCCCCeeEEEEecCCcccccccccCcceEEEeccCCCCCC
Q 006816 526 LSLCEGTAKTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLPSRVVKRVSVEAGSSVGWREYVGVEGKVIGVEEFGASGA 605 (630)
Q Consensus 526 v~~a~~aa~~L~~~gi~~~Vi~~~~i~pld~~~~~~~~~v~~~~~~~~v~vEe~~~~g~~~~~~~~~~~~g~d~f~~~g~ 605 (630)
|++|++|++.|+++||+++|||++|++|||+++..+++++++++.++ |++|++...||++++.. ++|++.|+.+|+
T Consensus 566 v~~al~Aa~~L~~~Gi~~~Vvd~~~l~pld~~~~~~~~sv~~~~~~~-v~vE~~~~~g~~~~v~~---~~gv~~f~~~g~ 641 (680)
T 1gpu_A 566 VSLSVEAAKTLAAKNIKARVVSLPDFFTFDKQPLEYRLSVLPDNVPI-MSVEVLATTCWGKYAHQ---SFGIDRFGASGK 641 (680)
T ss_dssp HHHHHHHHHHHHTTTCCEEEEECSCHHHHHHSCHHHHHHHSCSSSCE-EEECSSCSTTGGGTCSE---EECCCSCCCCSC
T ss_pred HHHHHHHHHHHHhcCCCEEEEEcCCCCcchhhhHHHHHHHhccCCce-EEEeCCccccHHHhcCc---ceeeCcCCCCCC
Confidence 99999999999999999999999999999999866778898886567 99999999888766532 288899999999
Q ss_pred HHHHHHHcCCChHHHHHHHHHhhh
Q 006816 606 YLDTFKKYGFTIDNVTKVARSLLS 629 (630)
Q Consensus 606 ~~~l~~~~gl~~~~I~~~i~~~l~ 629 (630)
.++|++++|+|+++|+++|+++++
T Consensus 642 ~~~l~~~~gl~~~~I~~~i~~~l~ 665 (680)
T 1gpu_A 642 APEVFKFFGFTPEGVAERAQKTIA 665 (680)
T ss_dssp HHHHHHHTTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHH
Confidence 999999999999999999999874
No 10
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=100.00 E-value=1.9e-116 Score=1001.45 Aligned_cols=607 Identities=46% Similarity=0.791 Sum_probs=543.5
Q ss_pred hHHHHHhhcCCCCCCCcccHHHHHHHHHHHhhccCCCCCCCCCCCeEEecCcChhHHHHHHHHHcCCCCCCHHHHhhhhh
Q 006816 2 LIVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQYVCLHLAGFQSVQLEDLKRLCK 81 (630)
Q Consensus 2 ~~~~~~~~~~~GH~g~~ls~~~~~~~L~~~~~~~d~~~~~~~~~Dr~v~s~gH~~~~~y~~~~l~G~~~~~~~~l~~~r~ 81 (630)
++++|+.++++||+|++||++|++++||..+|+|||+||+|++|||||||+||++|++|++++++|++ ++.++|++|||
T Consensus 18 ~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~~~~~p~~p~~~~rDr~vls~GH~~~~lYa~l~l~G~~-~~~~~l~~~r~ 96 (651)
T 2e6k_A 18 LAIDAVEKARSGHPGMPMGMAPLAYLLFREVMRHNPLDPDWPDRDRFVLSAGHGSMLLYAVLHLTGYD-LPLEELKSFRQ 96 (651)
T ss_dssp HHHHHHHHHTCSCCHHHHHHHHHHHHHHHTTCCCCTTCTTCTTSCEEEESSGGGHHHHHHHHHHTTCS-CCHHHHTTTTS
T ss_pred HHHHHHHHcCCCccCcchhHHHHHHHHHHHHhcCCccCCCCCCCCeEEEeCcchhHHHHHHHHHhCCC-CCHHHHHHhhc
Confidence 68999999999999999999999999999999999999999999999999999999999999999996 99999999999
Q ss_pred cCCCCCCCCCCCCcCcccccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHH
Q 006816 82 MGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAH 161 (630)
Q Consensus 82 ~~s~~~g~p~~~~~~~~~~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~ 161 (630)
++|.++|||++.++||+++++|+||+++|+|+|+|+|.++++++||+++++.++++|||++|||+++||++|||+++|++
T Consensus 97 ~~~~~~ghp~~~~~~g~~~~~G~lG~gl~~AvG~A~A~~~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~Eal~~A~~ 176 (651)
T 2e6k_A 97 WGSKTPGHPERGHTPGVEVTTGPLGQGISTAVGLALAERKLAAEFNRPGHVVVDHYTYVLASDGDLMEGVSGEAASLAGH 176 (651)
T ss_dssp TTCSCCSSCCBTTBTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCCCCCeeeccccccchHHHHHHHHHHHHhhcccccccccCCCCCEEEEEEChhhhchhHHHHHHHHHHH
Confidence 99999999998889999999999999999999999999999999999888878999999999999999999999999999
Q ss_pred cCCCcEEEEEECCCCcccccccccChhcHHHHHHhCCCeEE-EEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeeccccc
Q 006816 162 WKLNKLTLIYDDNHNTIDGPTSLVLSEDISARFKSLGWNTI-MVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRERV 240 (630)
Q Consensus 162 ~~L~~li~i~~~N~~~i~~~~~~~~~~~~~~~~~a~G~~~~-~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~~~ 240 (630)
++|||+++|+|||+|+|++++.....+|+.++|++|||+++ .| ||| |++++.+++++|++ .++|++|+++|.|++
T Consensus 177 ~~L~~li~i~~nN~~~i~~~~~~~~~~d~~~~~~a~G~~~~~~v-dG~-d~~~l~~al~~a~~-~~~P~lI~~~t~kg~- 252 (651)
T 2e6k_A 177 WGLSKLIVFWDDNRISIDGPTDLAFTEDVLARYRAYGWQTLRVE-DVN-DLEALRKAIKLAKL-DERPTLIAVRSHIGF- 252 (651)
T ss_dssp TTCTTEEEEEEECCEETTEEGGGTCCSCHHHHHHHTTCEEEEES-CTT-CHHHHHHHHHHHHH-SSSCEEEEEECCTTT-
T ss_pred cCCCeEEEEEECCCcccccccccccCccHHHHHHhCCCeEEEEe-CCC-CHHHHHHHHHHHHH-CCCCEEEEEEeEecc-
Confidence 99999999999999999999887678899999999999999 66 999 99999999999998 789999999999999
Q ss_pred CcccCCC---CC--CChHHHHHHHHhh--------------------hhchhHHHHHHHHHHhhhhcCCchhHhHHHHhc
Q 006816 241 NWVDRDQ---FH--VIPMVYREMQIQT--------------------DHGERLEKEWCSKVYNYRSKYPHEGAELDLLLN 295 (630)
Q Consensus 241 g~~~~~~---~~--~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (630)
|++..+. |. +++++++.|++.+ .++.....+|.+.+.++...+|+.+.++.+.+.
T Consensus 253 G~~~~~~~~~H~~~~~~~e~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 332 (651)
T 2e6k_A 253 GSPKQDSAKAHGEPLGPEAVEATRRNLGWPYPPFVVPEEVYRHMDMREKGRAWQEAWEKALEAYARAYPDLHQELMRRLR 332 (651)
T ss_dssp TSTTTTSGGGTSSCCHHHHHHHHHHHHTCCCCTTCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT
T ss_pred cccccccccccccCCCHHHHHHHHHHcCCCcccccCChHHHHHHHHhhhchhhHHHHHHHHHHhhhhChHHHHHHHHHhc
Confidence 9862221 22 3355555555432 112234567888888877777887777777777
Q ss_pred CCCCCCccccCCCCCCCCCCchHHHHHHHHHHHHHHhCCCeEEEecCCCCCcccccccccCcCCCC-CCCCCccccccch
Q 006816 296 GGLLPGWENALPKWSTSDPLDATRGYSEKCLNQLAKVLPGLIGGSADLASSNKAYLLGYHDFSQPD-SPWGRNIRYGVRE 374 (630)
Q Consensus 296 ~~~p~~~~~~~~~~~~~~~~~~~r~a~~~~L~~l~~~~~~iv~~~aD~~~s~~~~~~~~~~f~~~~-~~p~R~~~~gIaE 374 (630)
++.|. |...+|.| .++.+||++++++|.++++.+|+++++++|+++|+++..+++..| + + +||+||||+||+|
T Consensus 333 ~~~p~-~~~~~~~~---~~~~~~r~a~~~~L~~~~~~~p~~~~~~aDl~~s~~~~~~~~~~f-~-~~~~p~R~i~~gIaE 406 (651)
T 2e6k_A 333 GELPP-LPEEPPSF---DKPIATRAASGRALNLLAPRLPELLGGSADLTPSNNTKAEGMEDF-S-RANPLGRYLHFGVRE 406 (651)
T ss_dssp TCCCC-CCCSCCCC---CSCBCHHHHHHHHHHHHGGGCTTEEEEESSCHHHHTCSCTTCCBC-B-TTBTTCCEEECCSCH
T ss_pred CcCCc-hhhhcccc---CccHHHHHHHHHHHHHHHhhCCCEEEEeCcccccccccccccccc-C-ccCCCCceEecCcCH
Confidence 77786 66666665 357899999999999999999999999999998887755567778 4 5 8999999999999
Q ss_pred HHHHHHHHHHHhcCCCCceEeeehHHHHHhhHHHHHHhcccCCCeEEEEecCCCCCCCCCCCCCChhhhHHhhcCCCcEE
Q 006816 375 HAMAGISNGVALHGGGLIPFAATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAVPRLLA 454 (630)
Q Consensus 375 ~~~vg~a~GlA~~G~~~~pv~~~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~~g~~G~tHq~~~d~a~l~~iP~l~v 454 (630)
|+|+++|+|||++| |++||+++|++|++|+++|||+.|++++||+++++|+|+++|+||+|||++||+++||++|||+|
T Consensus 407 ~~~~~~a~GlA~~G-g~~P~~~t~~~F~~~~~~air~~a~~~lpvv~~~t~~g~g~G~dG~tHq~~edla~lr~iP~l~V 485 (651)
T 2e6k_A 407 HAMGAILNGLNLHG-GYRAYGGTFLVFSDYMRPAIRLAALMGVPTVFVFTHDSIALGEDGPTHQPVEHLMSLRAMPNLFV 485 (651)
T ss_dssp HHHHHHHHHHHHHS-SCEEEEEEEGGGGGGSHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEE
T ss_pred HHHHHHHHHHHHcC-CCEEEEEeHHHHHHHHHHHHHHHHhcCCCEEEEEECCccccCCCcCccccHHHHHHhcCCCCcEE
Confidence 99999999999997 69999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCChHHHHHHHHHHHHcCCCcEEEEEcCCCcccccCCCcccccccccEEEecCCCCCCCcEEEEEeCchHHHHHHHHH
Q 006816 455 FRPADGNETAGSYRVAIANRDVPSVIALSRQKIAANLEGTSADEVERGGYIVSDNSSENKPEIILIGTGTELSLCEGTAK 534 (630)
Q Consensus 455 ~~P~d~~e~~~~l~~a~~~~~~P~~ir~~r~~~~~~~~~~~~~~~~~G~~~~~~~~~~G~~dvtiva~G~~v~~a~~aa~ 534 (630)
++|+|++|++.+|++|++..++|++||++|+.. +.++.+....+++|+|++++ .++ +|++||++|+++++|++|++
T Consensus 486 ~~Pad~~E~~~~l~~A~~~~~~Pv~i~~~r~~~-~~~~~~~~~~~~~G~~vl~~--g~~-~dv~iva~G~~v~~al~Aa~ 561 (651)
T 2e6k_A 486 IRPADAYETFYAWLVALRRKEGPTALVLTRQAV-PLLSPEKARGLLRGGYVLED--VEE-PQGVLVATGSEVHLALRAQA 561 (651)
T ss_dssp ECCSSHHHHHHHHHHHHHCCSSCEEEECCSSCB-CCCCHHHHGGGGGSSEEEEC--CSS-CSEEEEECTTHHHHHHHHHH
T ss_pred EecCCHHHHHHHHHHHHHcCCCCEEEEEeCCCC-CCCCcchhhhhcCCCEEEee--CCC-CCEEEEEECHHHHHHHHHHH
Confidence 999999999999999999657999999999988 76654222357788888776 223 79999999999999999999
Q ss_pred HHHhcCCceEEEEcccccccCcccHHHHhccCCCCCeeEEEEecCCcccccccccCcceEEEeccCCCCCCHHHHHHHcC
Q 006816 535 TLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLPSRVVKRVSVEAGSSVGWREYVGVEGKVIGVEEFGASGAYLDTFKKYG 614 (630)
Q Consensus 535 ~L~~~gi~~~Vi~~~~i~pld~~~~~~~~~v~~~~~~~~v~vEe~~~~g~~~~~~~~~~~~g~d~f~~~g~~~~l~~~~g 614 (630)
.|+++||+++|||++|++|||.++..++++++++..++ |++|++...||++++ + +++|+|.|+++|+.++|++++|
T Consensus 562 ~L~~~Gi~~~Vv~~~~~~p~d~~~~~~~~~v~~~~~~v-v~vE~~~~~G~~~~v--~-~~ig~d~f~~sg~~~~l~~~~g 637 (651)
T 2e6k_A 562 LLREKGVRVRVVSLPSFELFAAQPEAYRKEVLPPGLPV-VAVEAGASLGWERYA--H-KVVALDRFGASAPYPEVYERLG 637 (651)
T ss_dssp HHHHTTCCEEEEECSCHHHHHTSCHHHHHHHSCTTSCE-EEECSSCCTTGGGTC--S-EEECCCSCCCSCCTTHHHHHTT
T ss_pred HHHhcCCcEEEEecCcCCccccccHHHHHHHhCcCCeE-EEEeCCccCchHHhC--C-CEEEeCCCCCCCCHHHHHHHhC
Confidence 99999999999999999999999866667888876565 999999998888765 2 7899999999999999999999
Q ss_pred CChHHHHHHHHHhh
Q 006816 615 FTIDNVTKVARSLL 628 (630)
Q Consensus 615 l~~~~I~~~i~~~l 628 (630)
||+++|+++|++++
T Consensus 638 l~~~~I~~~i~~~l 651 (651)
T 2e6k_A 638 FTPERVAEAFLSLV 651 (651)
T ss_dssp CCHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHhC
Confidence 99999999998764
No 11
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=100.00 E-value=9.9e-107 Score=914.44 Aligned_cols=574 Identities=26% Similarity=0.366 Sum_probs=479.2
Q ss_pred hHHHHHhhcCCCCCCCcccHHHHHHHHHHHhhccCCCCCCCCCCCeEEecCcChhHHHHHHHHHcCCCCCCHHHHhhhhh
Q 006816 2 LIVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQYVCLHLAGFQSVQLEDLKRLCK 81 (630)
Q Consensus 2 ~~~~~~~~~~~GH~g~~ls~~~~~~~L~~~~~~~d~~~~~~~~~Dr~v~s~gH~~~~~y~~~~l~G~~~~~~~~l~~~r~ 81 (630)
++++|+.++++||+|++||++||+++||.++||+||+||.|++|||||||+||+++++|++|+++|+ ++.++|++|||
T Consensus 23 ~~i~~~~~~~~GH~g~~l~~~e~~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~~~~ly~~~~l~G~--~~~~~l~~~r~ 100 (616)
T 3mos_A 23 SSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKSQDPRNPHNDRFVLSKGHAAPILYAVWAEAGF--LAEAELLNLRK 100 (616)
T ss_dssp HHHHHHHHHTCSCHHHHHTTHHHHHHHHHTTCBCCTTCTTCTTSCEEEESSGGGHHHHHHHHHHTTS--SCGGGGGGTTC
T ss_pred HHHHHHHhcCCCcCCcchhHHHHHHHHHHHhhccCCCCCCCCCCCeEEEcCccHHHHHHHHHHHcCC--CCHHHHHHhcc
Confidence 6899999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred cCCCCCCCCCCCCcCcccccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHH
Q 006816 82 MGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAH 161 (630)
Q Consensus 82 ~~s~~~g~p~~~~~~~~~~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~ 161 (630)
++|.++|||++ ..|++++++|+||+++|+|+|+|+|.++++ + .+++|||++|||+++||++||++++|++
T Consensus 101 ~~s~l~ghp~~-~~~~~d~~~G~lG~gl~~A~G~AlA~~~~~----~-----~~~~vv~v~GDG~~~eG~~~Eal~~A~~ 170 (616)
T 3mos_A 101 ISSDLDGHPVP-KQAFTDVATGSLGQGLGAACGMAYTGKYFD----K-----ASYRVYCLLGDGELSEGSVWEAMAFASI 170 (616)
T ss_dssp TTCSCCSSCCT-TSTTCSSCCCSTTCHHHHHHHHHHHHHHTS----C-----CSCCEEEEEETGGGGSHHHHHHHHHHHH
T ss_pred CCCCCCCCCCC-CCCcccccccccCCccHHHHHHHHHHHHhC----C-----CCCEEEEEECccccccCcHHHHHHHHHH
Confidence 99999999996 568999999999999999999999997643 1 4689999999999999999999999999
Q ss_pred cCCCcEEEEEECCCCcccccccccC-hhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeeccccc
Q 006816 162 WKLNKLTLIYDDNHNTIDGPTSLVL-SEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRERV 240 (630)
Q Consensus 162 ~~L~~li~i~~~N~~~i~~~~~~~~-~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~~~ 240 (630)
++|||+++|+|||+|++++++.... .+++.++|++|||+++.| ||| |+++|.++++++ .++|++|+|+|.|++
T Consensus 171 ~~l~~livi~nnN~~~i~~~~~~~~~~~~~~~~~~a~G~~~~~V-dG~-d~~~l~~al~~~---~~~P~lI~v~T~kg~- 244 (616)
T 3mos_A 171 YKLDNLVAILDINRLGQSDPAPLQHQMDIYQKRCEAFGWHAIIV-DGH-SVEELCKAFGQA---KHQPTAIIAKTFKGR- 244 (616)
T ss_dssp TTCTTEEEEEEECSBCSSSBCTTTTCHHHHHHHHHHTTCEEEEE-ETT-CHHHHHHHHHSC---CSSCEEEEEECCTTT-
T ss_pred cCCCcEEEEEECCCCCCcCCcccccChHHHHHHHHHcCCeEEEE-cCC-CHHHHHHHHHhc---CCCCEEEEEEEeccc-
Confidence 9999999999999999999887554 478999999999999998 999 999999999654 479999999999999
Q ss_pred CcccCCC----CCC--ChHHHHHHHHhhhhchhHHHHHHHHHHhhhhcCCchhHhHHHHhcCCCCCCccccCCCCCCCCC
Q 006816 241 NWVDRDQ----FHV--IPMVYREMQIQTDHGERLEKEWCSKVYNYRSKYPHEGAELDLLLNGGLLPGWENALPKWSTSDP 314 (630)
Q Consensus 241 g~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 314 (630)
|++..+. |.. +.+..+... +++...+++.....++...+.. .....+.......|+|.. .+
T Consensus 245 G~~~~e~~~~~Hg~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~ 311 (616)
T 3mos_A 245 GITGVEDKESWHGKPLPKNMAEQII----------QEIYSQIQSKKKILATPPQEDA--PSVDIANIRMPSLPSYKV-GD 311 (616)
T ss_dssp TSTTTTTCSSCTTCCCCHHHHHHHH----------HHHHHTCCCCCCCCCBCCCCCC--CCCCCSCCCCSSCCCCCT-TC
T ss_pred ccccccCchhhcCCCCCHHHHHHHH----------HHHHHHHHhhhhhCcCccchhh--hhhhhhccccCCCccccc-cc
Confidence 9953322 211 222222111 1111100000000111000000 000000000012345543 35
Q ss_pred CchHHHHHHHHHHHHHHhCCCeEEEecCCCCCcccccccccCcCCCCCCCCCccccccchHHHHHHHHHHHhcCCCC-ce
Q 006816 315 LDATRGYSEKCLNQLAKVLPGLIGGSADLASSNKAYLLGYHDFSQPDSPWGRNIRYGVREHAMAGISNGVALHGGGL-IP 393 (630)
Q Consensus 315 ~~~~r~a~~~~L~~l~~~~~~iv~~~aD~~~s~~~~~~~~~~f~~~~~~p~R~~~~gIaE~~~vg~a~GlA~~G~~~-~p 393 (630)
+.+||++++++|.+++++||+++++++|++.++++ +.| + ++||+||||+||+|++|+++|+|||+.| + +|
T Consensus 312 ~~a~r~a~~~~L~~l~~~d~~vv~~~aD~~~~~~~-----~~~-~-~~~p~R~~d~gIaE~~~v~~a~G~A~~G--~~~~ 382 (616)
T 3mos_A 312 KIATRKAYGQALAKLGHASDRIIALDGDTKNSTFS-----EIF-K-KEHPDRFIECYIAEQNMVSIAVGCATRN--RTVP 382 (616)
T ss_dssp BCCHHHHHHHHHHHHHHHCTTEEEEESSCHHHHSH-----HHH-H-HHCGGGEEECCSCHHHHHHHHHHHHGGG--CCEE
T ss_pred chHHHHHHHHHHHHHHhhCCCEEEEeCCcCCCcch-----hhH-H-HhCCCCeEEcCccHHHHHHHHHHHHHcC--CCCE
Confidence 68999999999999999999999999999876643 356 3 6899999999999999999999999999 6 79
Q ss_pred EeeehHHHHHhhHHHHHHhcccCCCeEEEEecCCCCCCCCCCCCCChhhhHHhhcCCCcEEEecCChHHHHHHHHHHHHc
Q 006816 394 FAATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAVPRLLAFRPADGNETAGSYRVAIAN 473 (630)
Q Consensus 394 v~~~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~~g~~G~tHq~~~d~a~l~~iP~l~v~~P~d~~e~~~~l~~a~~~ 473 (630)
++.+|++|++|++||||+.+++++||+++++++|+++|+||+|||++||+++||++|||+|++|+|++|++.+++++++.
T Consensus 383 ~~~~f~~Fl~~a~dqi~~~a~~~~~v~~v~~~~g~~~G~dG~tH~~~ed~a~l~~iP~l~V~~P~d~~e~~~~l~~a~~~ 462 (616)
T 3mos_A 383 FCSTFAAFFTRAFDQIRMAAISESNINLCGSHCGVSIGEDGPSQMALEDLAMFRSVPTSTVFYPSDGVATEKAVELAANT 462 (616)
T ss_dssp EEEEEGGGGGGGHHHHHHHHHTTCCEEEEEESBSGGGCTTCGGGCBSSHHHHHHTSTTEEEECCCSHHHHHHHHHHHHTC
T ss_pred EEEehHHHHHHHHHHHHHHHHhCCCeEEEEECCCccccCCCCcccCHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCcEEEEEcCCCcccccCCCcccccccccEEEecCCCCCCCc--EEEEEeCchHHHHHHHHHHHHhcCCceEEEEcccc
Q 006816 474 RDVPSVIALSRQKIAANLEGTSADEVERGGYIVSDNSSENKPE--IILIGTGTELSLCEGTAKTLRQEGRRVRVVSLVCW 551 (630)
Q Consensus 474 ~~~P~~ir~~r~~~~~~~~~~~~~~~~~G~~~~~~~~~~G~~d--vtiva~G~~v~~a~~aa~~L~~~gi~~~Vi~~~~i 551 (630)
++|++||++|+.. |.++.. ...+++|++.+++ + | +| +||||+|++++.|++|++.|+++||+++|||++++
T Consensus 463 -~gp~~ir~~r~~~-p~~~~~-~~~~~~Gka~vl~--e-g-~d~dv~iva~G~~v~~al~Aa~~L~~~Gi~v~Vidlr~l 535 (616)
T 3mos_A 463 -KGICFIRTSRPEN-AIIYNN-NEDFQVGQAKVVL--K-S-KDDQVTVIGAGVTLHEALAAAELLKKEKINIRVLDPFTI 535 (616)
T ss_dssp -CSEEEEECCSSCC-BCCSCT-TCCCCTTCCEEEE--C-C-SSEEEEEECCTHHHHHHHHHHHHHHTTTCEEEEEECSEE
T ss_pred -CCCEEEEEeCCCC-CccCCC-cccccCCeEEEEE--e-C-CCCCEEEEEeCHHHHHHHHHHHHHHhcCCCEEEEEeCcc
Confidence 8999999999987 766542 3456788877766 4 5 44 99999999999999999999999999999999999
Q ss_pred cccCcccHHHHhccCCCCCeeEEEEecCCcccc-c----ccc----cCcceEEEeccCCCCCCHHHHHHHcCCChHHHHH
Q 006816 552 RLFDRQPAEYKEKVLPSRVVKRVSVEAGSSVGW-R----EYV----GVEGKVIGVEEFGASGAYLDTFKKYGFTIDNVTK 622 (630)
Q Consensus 552 ~pld~~~~~~~~~v~~~~~~~~v~vEe~~~~g~-~----~~~----~~~~~~~g~d~f~~~g~~~~l~~~~gl~~~~I~~ 622 (630)
+|||.+++. +++.+++.++ ||+||+...|+ + +++ ..+++++|++.|+.+|++++|++++|||+++|++
T Consensus 536 ~PlD~e~i~--~~~~~~~~~v-vvvEe~~~~GG~G~~v~~~l~~~~~~~v~~~g~~~f~~~g~~~~l~~~~gl~~~~I~~ 612 (616)
T 3mos_A 536 KPLDRKLIL--DSARATKGRI-LTVEDHYYEGGIGEAVSSAVVGEPGITVTHLAVNRVPRSGKPAELLKMFGIDRDAIAQ 612 (616)
T ss_dssp ESCCHHHHH--HHHHHTTTEE-EEEEEEESTTSHHHHHHHHHTTCTTCEEEEEEECSCCCCSCHHHHHHHTTCSHHHHHH
T ss_pred CCCCHHHHH--HHHHhcCCEE-EEEcCCCCCcCHHHHHHHHHHhcCCCCEEEEeCCCCCCCCCHHHHHHHHCcCHHHHHH
Confidence 999999876 4566663356 99999987664 3 121 3467899997799999999999999999999999
Q ss_pred HHH
Q 006816 623 VAR 625 (630)
Q Consensus 623 ~i~ 625 (630)
+|+
T Consensus 613 ~i~ 615 (616)
T 3mos_A 613 AVR 615 (616)
T ss_dssp HHT
T ss_pred HHh
Confidence 986
No 12
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=100.00 E-value=5.5e-93 Score=821.75 Aligned_cols=611 Identities=18% Similarity=0.192 Sum_probs=473.7
Q ss_pred hHHHHHhhcC------CCCCCCcccHHHHHHHHHHHhhccCCCCCCCCCCCeEEecCcChhHHHHHHHHHcCCCCCCHHH
Q 006816 2 LIVDAVQNAK------AGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQYVCLHLAGFQSVQLED 75 (630)
Q Consensus 2 ~~~~~~~~~~------~GH~g~~ls~~~~~~~L~~~~~~~d~~~~~~~~~Dr~v~s~gH~~~~~y~~~~l~G~~~~~~~~ 75 (630)
++++||.+++ +||+|+++|++|++.+||+++|+.+ ++| .+|| ||+|+||++|++|++++|+|+ ++.++
T Consensus 88 ~~i~~v~~a~~~~~~~gGH~gs~ls~ael~~~l~~~~~~~~-~~~--~~~D-~V~~~GH~sp~~Ya~~~l~Gr--~~~e~ 161 (886)
T 2qtc_A 88 NAIMTVLRASKKDLELGGHMASFQSSATIYDVCFNHFFRAR-NEQ--DGGD-LVYFQGHISPGVYARAFLEGR--LTQEQ 161 (886)
T ss_dssp HHHHHHHHHHHTCSCCCCCSHHHHHHHHHHHHHHHHTCCCC-CSS--SCCC-EEECCGGGHHHHHHHHHHTTS--SCHHH
T ss_pred HHHHHHHHhcCCCCCCccCcCCcHHHHHHHHHHHHHhcCCC-CCC--CCCC-EEEEcchhHHHHHHHHHHhCC--CCHHH
Confidence 5789999988 8999999999999999999988864 344 6888 999999999999999999999 99999
Q ss_pred HhhhhhcC--CCCCCCCCCCCcCc-ccccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhH
Q 006816 76 LKRLCKMG--SRTPGHPENVVTEG-IEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGIS 152 (630)
Q Consensus 76 l~~~r~~~--s~~~g~p~~~~~~~-~~~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~ 152 (630)
|++|||++ +.++|||++..+|+ +++++|+||+|+++|+|+|++.|++..+... ...+++|||++|||+++||++
T Consensus 162 l~~fRq~~~~~gl~~~p~~~~~p~~~~~~tG~~G~g~s~AiG~A~a~~~l~~~~~~---~~~~~~v~aviGDG~l~eG~~ 238 (886)
T 2qtc_A 162 LDNFRQEVHGNGLSSYPHPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHRGLK---DTSKQTVYAFLGDGEMDEPES 238 (886)
T ss_dssp HTTBTCCTTSSCBCSSCCTTTSTTTCCCCCCSTTHHHHHHHHHHHHHHHHHHTTSC---CCTTCCEEEEEETGGGGSHHH
T ss_pred HHhccCCCCCCCCCCCCCcccCCCcccccccccCccHHHHHHHHHHhhhhcccccc---cCCCCEEEEEECCccccccch
Confidence 99999963 35678888777897 9999999999999999999999986544321 126899999999999999999
Q ss_pred HHHHHHhHHcCCCcEEEEEECCCCcccccccc--cChhcHHHHHHhCCCeEEEEe-------------------------
Q 006816 153 HEAAALAAHWKLNKLTLIYDDNHNTIDGPTSL--VLSEDISARFKSLGWNTIMVE------------------------- 205 (630)
Q Consensus 153 ~eal~~a~~~~L~~li~i~~~N~~~i~~~~~~--~~~~~~~~~~~a~G~~~~~v~------------------------- 205 (630)
|||+++|++++|+|+|||+|||+++|++++.. ....++.++++++||++++++
T Consensus 239 ~EAl~~A~~~~L~nli~Vvn~N~~si~~~v~~~~~~~~~l~~~~~~~G~~~~~v~~g~~~~~ll~~~~~~~l~~~~~~~~ 318 (886)
T 2qtc_A 239 KGAITIATREKLDNLVFVINCNLQRLDGPVTGNGKIINELEGIFEGAGWNVIKVMWGSRWDELLRKDTSGKLIQLMNETV 318 (886)
T ss_dssp HTTHHHHHHTTCTTEEEEEEECSBCSSSBSCTTSCHHHHHHHHHHHTTCEEEEECBCTTHHHHHHHCSSCHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCcEEEEEECCCcccCCCccccccccHHHHHHHHhCCCCEEEEecchhHHHHHccCCchHHHHHHHhcc
Confidence 99999999999999999999999999999875 346789999999999999985
Q ss_pred -------------------------------------------CCCCCHHHHHHHHHHHHhcCCCcEEEEEeecccccCc
Q 006816 206 -------------------------------------------NIHDNLSSFKEALMAAANETKKPTFIRVKKMRERVNW 242 (630)
Q Consensus 206 -------------------------------------------dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~~~g~ 242 (630)
||| |+.+|++|+++|++..++|++|+++|+||+ |+
T Consensus 319 d~~~q~~~~~~g~~~r~~~F~~~~~~~~l~~~~~d~~i~~l~~dGh-D~~~l~~a~~~A~~~~~~PtlI~~~T~KG~-G~ 396 (886)
T 2qtc_A 319 DGDYQTFKSKDGAYVREHFFGKYPETAALVADWTDEQIWALNRGGH-DPKKIYAAFKKAQETKGKATVILAHTIKGY-GM 396 (886)
T ss_dssp HHHHHHHTTSCHHHHHHHTSTTSHHHHTTTTTCCHHHHHTCCBGGG-CHHHHHHHHHHHHHCCSSCEEEEEECCTTT-TC
T ss_pred chhhhhhhhccchHHHHhhcccchHHHHHHhhcChhhHhhcccCCC-CHHHHHHHHHHHHHcCCCCEEEEEeeeecc-cc
Confidence 799 999999999999874469999999999999 99
Q ss_pred ccCCC-----C---CCChHHHHHHHHhhhhchhH-HHHHHH-HHHhhhhcCCchhHhHHH--HhcCCCCCCccc-----c
Q 006816 243 VDRDQ-----F---HVIPMVYREMQIQTDHGERL-EKEWCS-KVYNYRSKYPHEGAELDL--LLNGGLLPGWEN-----A 305 (630)
Q Consensus 243 ~~~~~-----~---~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~p~~~~~-----~ 305 (630)
.+... | +++.+.++.|++.. +... .+.... .+....+..++.....++ .+.+..|..... .
T Consensus 397 ~~~~e~~~~~H~~~~l~~~~~~~~r~~~--~~~~~~e~~~~~~f~~~~~~~~~~~~~~~r~~~l~g~~p~~~~~~~~~~~ 474 (886)
T 2qtc_A 397 GDAAKGKNIAHQVKKMNMDGVRHIRDRF--NVPVSDADIEKLPYITFPEGSEEHTYLHAQRQKLHGYLPSRQPNFTEKLE 474 (886)
T ss_dssp TTCC-------------CHHHHHHHHHT--TCSCCHHHHTTCCCCCCCTTSHHHHHHHHHHHHTTSCSSCCCCSCCSCCC
T ss_pred chhhcCCccccCCCCCCHHHHHHHHHHc--CCCCChhhhccccccCCccchHHHHHHHHHHHHhcccCcchhhhhhhccc
Confidence 75421 2 34456666666542 0000 000000 000000000011100111 233333421110 1
Q ss_pred CC---CCC----CCCCCchHHHHHHHHHHHHHHhC---CCeEEEecCCCC---------CcccccccccCcCC-------
Q 006816 306 LP---KWS----TSDPLDATRGYSEKCLNQLAKVL---PGLIGGSADLAS---------SNKAYLLGYHDFSQ------- 359 (630)
Q Consensus 306 ~~---~~~----~~~~~~~~r~a~~~~L~~l~~~~---~~iv~~~aD~~~---------s~~~~~~~~~~f~~------- 359 (630)
.| .|. ...++.+||++|+++|.++++++ ++|+++++|+.. |+++...+...| .
T Consensus 475 ~p~~~~~~~~~~~~~~~~atr~afg~~L~~l~~~~~~~~~iV~i~pd~~~~~G~~dl~~S~~i~~~~~~~f-~~~d~~~~ 553 (886)
T 2qtc_A 475 LPSLQDFGALLEEQSKEISTTIAFVRALNVMLKNKSIKDRLVPIIADEARTFGMEGLFRQIGIYSPNGQQY-TPQDREQV 553 (886)
T ss_dssp CCCGGGGHHHHSCCSSCBCHHHHHHHHHHHHTTCTTTTTTEEEEESSCSGGGTCHHHHHHHCBBCC--------------
T ss_pred CCchhhhhhhccCCCCcchHHHHHHHHHHHHHhhcccCCcEEEEcCccccccCcccccccccccccCCccc-ccccchhh
Confidence 12 221 12256789999999999999988 999999999653 233221122334 2
Q ss_pred ---CCCCCCCccccccchHHH-H---HHHHHHHhcCCCCceEeeehHHH-HHhhHHHHHHh-cccCCCeEEEEecCCCCC
Q 006816 360 ---PDSPWGRNIRYGVREHAM-A---GISNGVALHGGGLIPFAATFLIF-SDYMKNSIRLS-ALSHAGVIYILTHDSIGL 430 (630)
Q Consensus 360 ---~~~~p~R~~~~gIaE~~~-v---g~a~GlA~~G~~~~pv~~~~~~F-~~~a~dqi~~~-a~~~~pv~~v~~~~g~~~ 430 (630)
++.||+||||+||+|++| + |+|+|||++|.+++||+.+|++| ++|++|||++. ++++.++++.++..+.++
T Consensus 554 ~~~~e~~~~R~~d~GIaE~~a~~~~~g~a~GlA~~G~~~~P~~~~ys~F~~qRa~Dqi~~~~d~~~~~v~l~~~~~~~~~ 633 (886)
T 2qtc_A 554 AYYKEDEKGQILQEGINELGAGCSWLAAATSYSTNNLPMIPFYIYYSMFGFQRIGDLCWAAGDQQARGFLIGGTSGRTTL 633 (886)
T ss_dssp ----CBTTCCBEECCSCHHHHHHHHHHHHTHHHHTSCCCEEEEEEEGGGSHHHHHHHHHHHHHTTCCCEEEEESCSTTTS
T ss_pred hhhhhcCCCceeeeccCchhhhhHHHHHHHHHHhcCCCceEEEEEehHHHHHHHHHHHHHHHHHhcCCEEEEEecCcccC
Confidence 257899999999999994 6 79999999984489999999999 78999999885 899999999876666668
Q ss_pred CCCCCCCCChhhhHHhhcCCCcEEEecCChHHHHHHHHHHHHcCCCc----EEEEEcCCC--cc-cccCCCccccccccc
Q 006816 431 GEDGPTHQPVEQLAGLRAVPRLLAFRPADGNETAGSYRVAIANRDVP----SVIALSRQK--IA-ANLEGTSADEVERGG 503 (630)
Q Consensus 431 g~~G~tHq~~~d~a~l~~iP~l~v~~P~d~~e~~~~l~~a~~~~~~P----~~ir~~r~~--~~-~~~~~~~~~~~~~G~ 503 (630)
|+||+|||+++|+++||++|||+|++|+|++|++.+|++|+++.++| ++||++|+. +. |.++....+.+..|.
T Consensus 634 g~dG~tHq~~~~~a~lr~iPnl~V~~Pada~E~~~~l~~al~~~~gP~~e~v~i~~~r~~~~~~~p~~~~~~~~~~~gga 713 (886)
T 2qtc_A 634 NGEGLQHEDGHSHIQSLTIPNCISYDPAYAYEVAVIMHDGLERMYGEKQENVYYYITTLNENYHMPAMPEGAEEGIRKGI 713 (886)
T ss_dssp TTTCTTTCCSCHHHHHTTSTTEEEECCSSHHHHHHHHHHHHHHHHSTTCCCCEEEEECCSCCBCCCCCCTTCHHHHHHTC
T ss_pred CCCCCccCCcchHHHHhhCCCCEEEecCCHHHHHHHHHHHHHhcCCCCCceEEEEEeCCccccCCCCCCcchhhhccCce
Confidence 99999999999999999999999999999999999999999865679 999999965 20 223322223354556
Q ss_pred EEEecCCCCCCCcEEEEEeCchHHHHHHHHHHHHhc-CCceEEEEcccccccCcccH----------------HHHhccC
Q 006816 504 YIVSDNSSENKPEIILIGTGTELSLCEGTAKTLRQE-GRRVRVVSLVCWRLFDRQPA----------------EYKEKVL 566 (630)
Q Consensus 504 ~~~~~~~~~G~~dvtiva~G~~v~~a~~aa~~L~~~-gi~~~Vi~~~~i~pld~~~~----------------~~~~~v~ 566 (630)
|++++.+.++ +||+||++|+++++|++|++.|+++ ||+++|||++|++|||++++ .|+++++
T Consensus 714 ~vlr~g~~~~-~dVtLia~G~~v~~al~AAe~L~~e~GI~a~Vvd~~sl~pLD~e~i~~~kt~rl~p~~~~~~~~~e~~l 792 (886)
T 2qtc_A 714 YKLETIEGSK-GKVQLLGSGSILRHVREAAEILAKDYGVGSDVYSVTSFTELARDGQDCERWNMLHPLETPRVPYIAQVM 792 (886)
T ss_dssp EEEEEECCSS-EEEEEEECGGGHHHHHHHHHHHHHHHCEEEEEEECSCHHHHHHHHHHHHHHHHHCTTSCCCCCHHHHHC
T ss_pred EEEEecCCCC-CCEEEEeCcHHHHHHHHHHHHHhhhhCCceEEEECCcCcccchHHHHHhhhcccCccccccHHHHHHhc
Confidence 7766510013 7999999999999999999999988 99999999999999997642 2455666
Q ss_pred CCCCeeEEEEecCCc---cccccccc-CcceEEEeccCCCCCCHHHHHHHcCCChHHHHHHHHHhhh
Q 006816 567 PSRVVKRVSVEAGSS---VGWREYVG-VEGKVIGVEEFGASGAYLDTFKKYGFTIDNVTKVARSLLS 629 (630)
Q Consensus 567 ~~~~~~~v~vEe~~~---~g~~~~~~-~~~~~~g~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l~ 629 (630)
.. .++ |++|++.. .+|.+|+. .++.++|+|.|+.||++++|+++||+|+++|+++|++++.
T Consensus 793 ~~-~~v-Va~ed~~~g~~~~~~~~~~~~~~~~lG~D~Fg~sg~~~~L~~~~Gld~e~Iv~~a~~~L~ 857 (886)
T 2qtc_A 793 ND-APA-VASTDYMKLFAEQVRTYVPADDYRVLGTDGFGRSDSRENLRHHFEVDASYVVVAALGELA 857 (886)
T ss_dssp CS-SCE-EEECSSCTHHHHTTGGGCCSSCEEEECCCSCCCCCCHHHHHHHTTCSHHHHHHHHHHHHH
T ss_pred CC-CCE-EEEEecccchHHHHHHHcCCCCeEEEEeCCCCCCCCHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 55 455 88888543 34556776 6788899999999999999999999999999999998764
No 13
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=100.00 E-value=1.8e-91 Score=795.42 Aligned_cols=526 Identities=20% Similarity=0.281 Sum_probs=445.3
Q ss_pred hHHHHHhhcCCCCCCCcccHHHHHHHHHHHhhccCCCCCCCCCCCeEEecCcChhHHHHHHHHHcCCCCCCHHHHhhhhh
Q 006816 2 LIVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQYVCLHLAGFQSVQLEDLKRLCK 81 (630)
Q Consensus 2 ~~~~~~~~~~~GH~g~~ls~~~~~~~L~~~~~~~d~~~~~~~~~Dr~v~s~gH~~~~~y~~~~l~G~~~~~~~~l~~~r~ 81 (630)
++++++. +++||+|+++|+++++.+||+. ||+ +||+||+|+||++ |++++++|+. +++.+|||
T Consensus 40 ~~~~~~~-~~~Gh~~~~lg~v~l~~aL~~~---~~~------~~D~~v~~~GH~~---y~~~~l~G~~----~~~~~~r~ 102 (629)
T 2o1x_A 40 EIVRVCS-RGGLHLASSLGAVDIITALHYV---LDS------PRDRILFDVGHQA---YAHKILTGRR----DQMADIKK 102 (629)
T ss_dssp HHHHHHT-TSSSCHHHHHHTHHHHHHHHHH---SCT------TTSEEEESSSTTC---HHHHHTTTTG----GGGGGTTS
T ss_pred HHHHHHH-hcCCcCCCchhHHHHHHHHHhh---cCC------CCCeEEecCchHH---HHHHHHhCcH----hHHhCccc
Confidence 4678887 4899999999999999999976 665 6999999999999 9999999982 67889999
Q ss_pred cCCCCCCCCCCCCcCcccccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHH
Q 006816 82 MGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAH 161 (630)
Q Consensus 82 ~~s~~~g~p~~~~~~~~~~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~ 161 (630)
+++.+ |||++.++|++.+++|+||+++|+|+|+|+|.|+++ ++++|||++|||++++|++||||++|++
T Consensus 103 ~~g~~-G~p~~~~s~~~~~~~G~~G~gl~~AvG~AlA~k~~~----------~~~~Vv~v~GDG~~~~G~~~EaL~~A~~ 171 (629)
T 2o1x_A 103 EGGIS-GFTKVSESEHDAITVGHASTSLTNALGMALARDAQG----------KDFHVAAVIGDGSLTGGMALAALNTIGD 171 (629)
T ss_dssp TTSCC-SSCCGGGCTTCCSCCSSSSCHHHHHHHHHHHHHHHT----------CCCCEEEEEETTGGGSHHHHHHHHHHHH
T ss_pred CCCCC-CCCCCCCCCCCCcCCCcccccHhHHHHHHHHHHHhC----------CCCeEEEEEchhhhhccHHHHHHHHHHh
Confidence 99975 999988899999999999999999999999998876 7899999999999999999999999999
Q ss_pred cCCCcEEEEEECCCCccccccccc---Ch-----------------------h----------c-H------H--HHHHh
Q 006816 162 WKLNKLTLIYDDNHNTIDGPTSLV---LS-----------------------E----------D-I------S--ARFKS 196 (630)
Q Consensus 162 ~~L~~li~i~~~N~~~i~~~~~~~---~~-----------------------~----------~-~------~--~~~~a 196 (630)
+++| +++|+|||+|+++++++.. .. . + + . +++++
T Consensus 172 ~~~p-li~IvnnN~~~i~~~~~~~~~~~~~l~~~~~y~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~~~~p~~~~~~ea 250 (629)
T 2o1x_A 172 MGRK-MLIVLNDNEMSISENVGAMNKFMRGLQVQKWFQEGEGAGKKAVEAVSKPLADFMSRAKNSTRHFFDPASVNPFAA 250 (629)
T ss_dssp HCCS-EEEEEEECSBSSSBCCSSHHHHC---------------------------------------------CCCTTGG
T ss_pred hCCC-EEEEEECCCCCCCCChhHHHHHHHHHhhchhHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhhcCcccchHHHh
Confidence 9976 8999999999998877521 00 0 3 2 3 68999
Q ss_pred CCCeEE-EEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeecccccCcccCCCCCCChHHHHHHHHhhhhchhHHHHHHHH
Q 006816 197 LGWNTI-MVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRERVNWVDRDQFHVIPMVYREMQIQTDHGERLEKEWCSK 275 (630)
Q Consensus 197 ~G~~~~-~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (630)
|||+++ .| ||| |++++.+++++|++ .++|++|+++|.||+ |+++.+... ..||.
T Consensus 251 ~G~~~~g~v-dG~-d~~~l~~al~~A~~-~~~P~lI~v~t~kg~-G~~~~e~~~--------------------~~~H~- 305 (629)
T 2o1x_A 251 MGVRYVGPV-DGH-NVQELVWLLERLVD-LDGPTILHIVTTKGK-GLSYAEADP--------------------IYWHG- 305 (629)
T ss_dssp GTCEEEEEE-ESS-CHHHHHHHHHHHTT-SSSEEEEEEECCTTT-TCHHHHHCT--------------------TGGGS-
T ss_pred cCCeEEeeE-CCc-CHHHHHHHHHHHHh-cCCCEEEEEEEecCC-CCChhHcCC--------------------ccccc-
Confidence 999999 76 999 99999999999987 689999999999999 985332110 12221
Q ss_pred HHhhhhcCCchhHhHHHHhcCCCCCCccccCCCCCCCCCCchHHHHHHHHHHHHHHhCCCeEEEecCCCCCccccccccc
Q 006816 276 VYNYRSKYPHEGAELDLLLNGGLLPGWENALPKWSTSDPLDATRGYSEKCLNQLAKVLPGLIGGSADLASSNKAYLLGYH 355 (630)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~r~a~~~~L~~l~~~~~~iv~~~aD~~~s~~~~~~~~~ 355 (630)
..|...+... +... +..+++++|+++|.+++++||+++++++|+.++++. .
T Consensus 306 ---------------------~~~f~~~~~~--~~~~-~~~~~~~~~~~~l~~~~~~d~~v~~i~~d~~~~~~~-----~ 356 (629)
T 2o1x_A 306 ---------------------PAKFDPATGE--YVPS-SAYSWSAAFGEAVTEWAKTDPRTFVVTPAMREGSGL-----V 356 (629)
T ss_dssp ---------------------CCSBCTTTCC--BCCC-CCCBHHHHHHHHHHHHHHHCTTEEEEESSCTTTTTC-----H
T ss_pred ---------------------CccCCcCcCc--cccc-chHHHHHHHHHHHHHHhhhCcCEEEEeccccCCcCh-----H
Confidence 0011100000 0001 146789999999999999999999999999766542 3
Q ss_pred CcCCCCCCCCCccccccchHHHHHHHHHHHhcCCCCceEeeehHHHHHhhHHHHHH-hcccCCCeEEEEecCCCCCCCCC
Q 006816 356 DFSQPDSPWGRNIRYGVREHAMAGISNGVALHGGGLIPFAATFLIFSDYMKNSIRL-SALSHAGVIYILTHDSIGLGEDG 434 (630)
Q Consensus 356 ~f~~~~~~p~R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~~~~~F~~~a~dqi~~-~a~~~~pv~~v~~~~g~~~g~~G 434 (630)
.| + ++||+||||+||+|++|+++|+|||+.| ++||+++|++|++|++|||++ +|++++||+++++++|+ +|+||
T Consensus 357 ~f-~-~~~~~r~~~~gIaE~~~~~~a~G~A~~G--~rp~~~~~~~F~~~a~dqi~~~~a~~~~pvv~~~~~~g~-~g~dG 431 (629)
T 2o1x_A 357 EF-S-RVHPHRYLDVGIAEEVAVTTAAGMALQG--MRPVVAIYSTFLQRAYDQVLHDVAIEHLNVTFCIDRAGI-VGADG 431 (629)
T ss_dssp HH-H-HHCGGGEEECCSCHHHHHHHHHHHHHTT--CEEEEEEEHHHHGGGHHHHHHTTTTTTCCCEEEEESBBC-CCTTC
T ss_pred HH-H-HhcCcceEeccccHHHHHHHHHHHHHcC--CEEEEEecHHHHHHHHHHHHHHHhhcCCCEEEEEECCcc-CCCCC
Confidence 57 4 5899999999999999999999999999 999999999999999999766 69999999999988887 68999
Q ss_pred CCCCChhhhHHhhcCCCcEEEecCChHHHHHHHHHHHHcCCCcEEEEEcCCCcccccCCCcccccccccEEEecCCCCCC
Q 006816 435 PTHQPVEQLAGLRAVPRLLAFRPADGNETAGSYRVAIANRDVPSVIALSRQKIAANLEGTSADEVERGGYIVSDNSSENK 514 (630)
Q Consensus 435 ~tHq~~~d~a~l~~iP~l~v~~P~d~~e~~~~l~~a~~~~~~P~~ir~~r~~~~~~~~~~~~~~~~~G~~~~~~~~~~G~ 514 (630)
+|||+++|+++||++|||+|++|+|++|++.+|++|++. ++|++||++|+.+ +.++.+....+++|++.+++ + |
T Consensus 432 ~tH~~~~d~a~~r~iP~l~v~~P~d~~e~~~~~~~a~~~-~~Pv~i~~~r~~~-~~~~~~~~~~~~~G~~~~~~--~-g- 505 (629)
T 2o1x_A 432 ATHNGVFDLSFLRSIPGVRIGLPKDAAELRGMLKYAQTH-DGPFAIRYPRGNT-AQVPAGTWPDLKWGEWERLK--G-G- 505 (629)
T ss_dssp TTTCBCSHHHHTTTSTTCEEECCSSHHHHHHHHHHHHHS-SSCEEEECCSSBC-CCCCTTCCCCCCTTCCEEEE--C-C-
T ss_pred cccCccHHHHHHHccCCcEEEecCCHHHHHHHHHHHHhC-CCCEEEEecCCCC-CCCcccccccccCCceEEEe--e-C-
Confidence 999999999999999999999999999999999999998 8999999999987 65442233457899966655 4 7
Q ss_pred CcEEEEEeCchHHHHHHHHHHHHhcCCceEEEEcccccccCcccHHHHhccCCCCCeeEEEEecCCccc-cc----ccc-
Q 006816 515 PEIILIGTGTELSLCEGTAKTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLPSRVVKRVSVEAGSSVG-WR----EYV- 588 (630)
Q Consensus 515 ~dvtiva~G~~v~~a~~aa~~L~~~gi~~~Vi~~~~i~pld~~~~~~~~~v~~~~~~~~v~vEe~~~~g-~~----~~~- 588 (630)
.|++|||+|++++.|++|++.|+ +++|||++|++|||++++. +++.+++ ++ |++||+...| ++ +++
T Consensus 506 ~dv~iva~G~~v~~a~~Aa~~L~----~~~Vi~~~~~~Pld~~~i~--~~~~~~~-~v-v~vEe~~~~gG~g~~v~~~l~ 577 (629)
T 2o1x_A 506 DDVVILAGGKALDYALKAAEDLP----GVGVVNARFVKPLDEEMLR--EVGGRAR-AL-ITVEDNTVVGGFGGAVLEALN 577 (629)
T ss_dssp SSEEEEECHHHHHHHHHHHTTCT----TEEEEECCEEESCCHHHHH--HHHHHCS-EE-EEEEEEESSSSHHHHHHHHHH
T ss_pred CCEEEEEecHHHHHHHHHHHHhc----CCEEEeeCCCCCCcHHHHH--HHHhhCC-cE-EEEecCCCCCCHHHHHHHHHH
Confidence 89999999999999999999986 8999999999999999775 3343443 55 9999998865 33 222
Q ss_pred ----cCcceEEEe-ccCCCCCCHHHHHHHcCCChHHHHHHHHHhhh
Q 006816 589 ----GVEGKVIGV-EEFGASGAYLDTFKKYGFTIDNVTKVARSLLS 629 (630)
Q Consensus 589 ----~~~~~~~g~-d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l~ 629 (630)
..+++++|+ |.|+++|+.++|++++|+|+++|+++|+++++
T Consensus 578 ~~~~~~~v~~ig~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~~~ 623 (629)
T 2o1x_A 578 SMNLHPTVRVLGIPDEFQEHATAESVHARAGIDAPAIRTVLAELGV 623 (629)
T ss_dssp HTTCCCEEEEEEECSSCCCSCCHHHHHHHHTCSHHHHHHHHHHTTC
T ss_pred HhCCCCCeEEEeeCCcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 356789999 99999999999999999999999999998864
No 14
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.3e-90 Score=788.04 Aligned_cols=528 Identities=21% Similarity=0.302 Sum_probs=434.3
Q ss_pred hHHHHHhhcCCCCCCCcccHHHHHHHHHHHhhccCCCCCCCCCCCeEEecCcChhHHHHHHHHHcCCCCCCHHHHhhhhh
Q 006816 2 LIVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQYVCLHLAGFQSVQLEDLKRLCK 81 (630)
Q Consensus 2 ~~~~~~~~~~~GH~g~~ls~~~~~~~L~~~~~~~d~~~~~~~~~Dr~v~s~gH~~~~~y~~~~l~G~~~~~~~~l~~~r~ 81 (630)
++++++. +++||+|+++|+++++++||.. ||+ +||+||+|+||++ |++++++|+ .++|++|||
T Consensus 38 ~~~~~~~-~~~Gh~~~~lg~~~~~~~l~~~---~~~------~~D~~v~~~gH~~---y~~~~l~G~----~~~~~~~r~ 100 (621)
T 2o1s_A 38 YLLDSVS-RSSGHFASGLGTVELTVALHYV---YNT------PFDQLIWDVGHQA---YPHKILTGR----RDKIGTIRQ 100 (621)
T ss_dssp HHHHHSC-GGGCTHHHHHTTHHHHHHHHHH---SCT------TTSEEEESSSTTC---HHHHHTTTT----GGGGGGTTS
T ss_pred HHHHHHh-hcCCCcCCChhHHHHHHHHHhc---cCC------CCCEEEEeCchHH---HHHHHHhCC----Hhhhhcccc
Confidence 4678886 4799999999999999999976 665 6999999999999 999999998 378999999
Q ss_pred cCCCCCCCCCCCCcCcccccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHH
Q 006816 82 MGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAH 161 (630)
Q Consensus 82 ~~s~~~g~p~~~~~~~~~~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~ 161 (630)
++|.. |||++.++|++.+++|+||+++|+|+|+|+|.|+++ ++++|||++|||++++|++||||++|++
T Consensus 101 ~~g~~-g~~~~~~s~~~~~~~G~~G~gl~~A~G~AlA~~~~~----------~~~~Vv~v~GDG~~~~G~~~EaL~~A~~ 169 (621)
T 2o1s_A 101 KGGLH-PFPWRGESEYDVLSVGHSSTSISAGIGIAVAAEKEG----------KNRRTVCVIGDGAITAGMAFEAMNHAGD 169 (621)
T ss_dssp TTSCC-SSCCTTTCTTCCSCCSSSSCHHHHHHHHHHHHHHHT----------SCCCEEEEEETTGGGSHHHHHHHHHHHH
T ss_pred cCCCC-CCCCCCCCCCCccCCcccchHHHHHHHHHHHHHHhC----------CCCeEEEEEchhhhhccHHHHHHHHHHh
Confidence 99975 999987889999999999999999999999998886 7899999999999999999999999999
Q ss_pred cCCCcEEEEEECCCCcccccccccC------------------hh-----------------cH-------HHHHHhCCC
Q 006816 162 WKLNKLTLIYDDNHNTIDGPTSLVL------------------SE-----------------DI-------SARFKSLGW 199 (630)
Q Consensus 162 ~~L~~li~i~~~N~~~i~~~~~~~~------------------~~-----------------~~-------~~~~~a~G~ 199 (630)
+++| +++|+|||+|+++++++... .. +. ..+|++|||
T Consensus 170 ~~~p-li~vvnnN~~~i~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~p~~~~~~~r~~~~~~~~~~p~~~~ea~G~ 248 (621)
T 2o1s_A 170 IRPD-MLVILNDNEMSISENVGALNNHLAQLLSGKLYSSLREGGKKVFSGVPPIKELLKRTEEHIKGMVVPGTLFEELGF 248 (621)
T ss_dssp HCCS-EEEEEEECC--------------------------------------------------------CHHHHHHTTC
T ss_pred hCCC-EEEEEeCCCcccCCCcchHHHHHHhhhcchhHHHHHHHHHHHHhccchHHHHHHHHHHHhhhccChhhHHHHCCC
Confidence 9976 88999999999998775311 00 11 478999999
Q ss_pred eEE-EEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeecccccCcccCCCCCCChHHHHHHHHhhhhchhHHHHHHHHHHh
Q 006816 200 NTI-MVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRERVNWVDRDQFHVIPMVYREMQIQTDHGERLEKEWCSKVYN 278 (630)
Q Consensus 200 ~~~-~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (630)
+++ .| ||| |++++.+++++|++ .++|++|+++|.|++ |+++.+... ..||..
T Consensus 249 ~~~g~v-dG~-d~~~l~~al~~A~~-~~gP~lI~v~t~kg~-G~~~~e~~~--------------------~~~H~~--- 301 (621)
T 2o1s_A 249 NYIGPV-DGH-DVLGLITTLKNMRD-LKGPQFLHIMTKKGR-GYEPAEKDP--------------------ITFHAV--- 301 (621)
T ss_dssp EEEEEE-ETT-CHHHHHHHHHHHHH-SCSEEEEEEECCCTT-CCCCC---------------------------------
T ss_pred eEeeee-CCC-CHHHHHHHHHHHHH-cCCCEEEEEEEeccc-CCChhhcCc--------------------hhccCC---
Confidence 999 76 999 99999999999998 789999999999999 997654321 133321
Q ss_pred hhhcCCchhHhHHHHhcCCCCCCccccCCCCCCCCCCchHHHHHHHHHHHHHHhCCCeEEEecCCCCCcccccccccCcC
Q 006816 279 YRSKYPHEGAELDLLLNGGLLPGWENALPKWSTSDPLDATRGYSEKCLNQLAKVLPGLIGGSADLASSNKAYLLGYHDFS 358 (630)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~r~a~~~~L~~l~~~~~~iv~~~aD~~~s~~~~~~~~~~f~ 358 (630)
..+++... . +. .......+++++|+++|.+++++||+|+++++|+.++++. ..|
T Consensus 302 -~~f~~~~~---------~-~~---------~~~~~~~~~~~~~~~~l~~~~~~d~~v~~~~~d~~~~~~~-----~~~- 355 (621)
T 2o1s_A 302 -PKFDPSSG---------C-LP---------KSSGGLPSYSKIFGDWLCETAAKDNKLMAITPAMREGSGM-----VEF- 355 (621)
T ss_dssp ------------------------------------CCBHHHHHHHHHHHHHHHCTTEEEEESSCTTTTTC-----HHH-
T ss_pred -CCCCCCcC---------c-cc---------ccccchHHHHHHHHHHHHHHHhhCcCEEEEeCcccCCcCh-----HHH-
Confidence 00111100 0 00 0011245789999999999999999999999999765542 357
Q ss_pred CCCCCCCCccccccchHHHHHHHHHHHhcCCCCceEeeehHHHHHhhHHHHHH-hcccCCCeEEEEecCCCCCCCCCCCC
Q 006816 359 QPDSPWGRNIRYGVREHAMAGISNGVALHGGGLIPFAATFLIFSDYMKNSIRL-SALSHAGVIYILTHDSIGLGEDGPTH 437 (630)
Q Consensus 359 ~~~~~p~R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~~~~~F~~~a~dqi~~-~a~~~~pv~~v~~~~g~~~g~~G~tH 437 (630)
+ ++||+||||+||+|++|+++|+|+|+.| ++||+++|++|++|++|||++ +|++++||+++++++|+ +|+||+||
T Consensus 356 ~-~~~~~r~~~~gIaE~~~~~~a~G~A~~G--~rp~~~~~~~F~~~a~dqi~~~~a~~~~pvv~~~~~~g~-~g~~G~tH 431 (621)
T 2o1s_A 356 S-RKFPDRYFDVAIAEQHAVTFAAGLAIGG--YKPIVAIYSTFLQRAYDQVLHDVAIQKLPVLFAIDRAGI-VGADGQTH 431 (621)
T ss_dssp H-HHCTTTEEECCSCHHHHHHHHHHHHHTT--CEEEEEEETTGGGGGHHHHHHTTTTTTCCCEEEEESCBC-CCTTCGGG
T ss_pred H-HhCCCceEecCcCHHHHHHHHHHHHHCC--CEEEEEehHhHHHHHHHHHHHHHHhcCCCEEEEEECCcc-CCCCCCcc
Confidence 4 5899999999999999999999999999 999999999999999999766 69999999999988887 68899999
Q ss_pred CChhhhHHhhcCCCcEEEecCChHHHHHHHHHHHHcCCCcEEEEEcCCCcccccCCCcccccccccEEEecCCCCCCCcE
Q 006816 438 QPVEQLAGLRAVPRLLAFRPADGNETAGSYRVAIANRDVPSVIALSRQKIAANLEGTSADEVERGGYIVSDNSSENKPEI 517 (630)
Q Consensus 438 q~~~d~a~l~~iP~l~v~~P~d~~e~~~~l~~a~~~~~~P~~ir~~r~~~~~~~~~~~~~~~~~G~~~~~~~~~~G~~dv 517 (630)
|+++|+++||++|||+|++|+|++|++.+|++|++..++|++||++|+.+ +..+....+.+++|++.+++ + | +|+
T Consensus 432 ~~~~d~~~~~~iP~l~v~~P~d~~e~~~~l~~a~~~~~~Pv~i~~~r~~~-~~~~~~~~~~~~~G~~~~~~--~-g-~dv 506 (621)
T 2o1s_A 432 QGAFDLSYLRCIPEMVIMTPSDENECRQMLYTGYHYNDGPSAVRYPRGNA-VGVELTPLEKLPIGKGIVKR--R-G-EKL 506 (621)
T ss_dssp CBCSHHHHTTTSTTCEEECCSSHHHHHHHHHHHHHCCSSCEEEECCSSBC-CCCCCCCCCCCCTTCCEEEE--C-C-SSE
T ss_pred CchHHHHHHhcCCCCEEEecCCHHHHHHHHHHHHHcCCCCEEEEeCCCCC-CCCCCCccccccCCceEEee--c-C-CCE
Confidence 99999999999999999999999999999999999768999999999987 55431111567889966666 4 7 899
Q ss_pred EEEEeCchHHHHHHHHHHHHhcCCceEEEEcccccccCcccHHHHhccCCCCCeeEEEEecCCccc-cc----cc-----
Q 006816 518 ILIGTGTELSLCEGTAKTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLPSRVVKRVSVEAGSSVG-WR----EY----- 587 (630)
Q Consensus 518 tiva~G~~v~~a~~aa~~L~~~gi~~~Vi~~~~i~pld~~~~~~~~~v~~~~~~~~v~vEe~~~~g-~~----~~----- 587 (630)
+|||+|++++.|++| ++||+++|||++|++|||++.+. +++.+++ ++ |++||+...| ++ ++
T Consensus 507 ~iva~G~~~~~a~~A-----~~Gi~v~Vi~~~~~~P~d~~~i~--~~~~~~~-~v-v~vEe~~~~gg~g~~v~~~l~~~~ 577 (621)
T 2o1s_A 507 AILNFGTLMPEAAKV-----AESLNATLVDMRFVKPLDEALIL--EMAASHE-AL-VTVEENAIMGGAGSGVNEVLMAHR 577 (621)
T ss_dssp EEEEESTTHHHHHHH-----HHHHTCEEEECCEEESCCHHHHH--HHHHHCS-EE-EEEEEEESTTSHHHHHHHHHHHTT
T ss_pred EEEEecHHHHHHHHH-----cCCCCEEEEecCccCCCCHHHHH--HHHccCC-eE-EEEECCCCCCCHHHHHHHHHHhcC
Confidence 999999999999999 46999999999999999999775 3344443 55 9999998765 43 22
Q ss_pred ccCcceEEEe-ccCCCCCCHHHHHHHcCCChHHHHHHHHHhhh
Q 006816 588 VGVEGKVIGV-EEFGASGAYLDTFKKYGFTIDNVTKVARSLLS 629 (630)
Q Consensus 588 ~~~~~~~~g~-d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l~ 629 (630)
+..+++++|+ |.|+++|+.++|++++|+|+++|+++|+++++
T Consensus 578 ~~~~v~~ig~~d~f~~~g~~~~l~~~~g~~~~~I~~~i~~~l~ 620 (621)
T 2o1s_A 578 KPVPVLNIGLPDFFIPQGTQEEMRAELGLDAAGMEAKIKAWLA 620 (621)
T ss_dssp CCCCEEEEEECSSCCCCSCHHHHHHHTTCSHHHHHHHHHHHHC
T ss_pred CCCCeEEEecCCcCCCCCCHHHHHHHHCcCHHHHHHHHHHHhc
Confidence 2357889999 99999999999999999999999999999874
No 15
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Probab=100.00 E-value=5e-83 Score=724.27 Aligned_cols=584 Identities=16% Similarity=0.176 Sum_probs=431.6
Q ss_pred ChHHHHHhhcCCCCCCCcccHHHHHHHHHHHhhccCCCCCCCCCCCe-EEecCcChhHHHHHHHHHcCCC-----CCC--
Q 006816 1 MLIVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDR-FVLSAGHGCLLQYVCLHLAGFQ-----SVQ-- 72 (630)
Q Consensus 1 ~~~~~~~~~~~~GH~g~~ls~~~~~~~L~~~~~~~d~~~~~~~~~Dr-~v~s~gH~~~~~y~~~~l~G~~-----~~~-- 72 (630)
.|.+|+|+++++||+|+++|++++ ++++..+++.+ +||| ||+|+||++|++|+.+++.|+. +++
T Consensus 71 ~L~~d~vk~a~sGH~G~~~g~a~i-y~~~~~~~~~~-------~rDr~fvls~GHg~p~lYa~l~l~G~~~~~~p~~s~d 142 (845)
T 3ahc_A 71 PFTRDDVKHRLVGHWGTTPGLNFL-LAHINRLIADH-------QQNTVFIMGPGHGGPAGTSQSYVDGTYTEYYPNITKD 142 (845)
T ss_dssp SCCGGGBCSSCCSCCTTHHHHHHH-HHHHHHHHHHH-------TBCBCCEESSGGGHHHHHHHHHHHTHHHHHCTTSCSS
T ss_pred cCCHHHhhhcCCCCCCCCHHHHHH-HHHHHHhcccC-------CCceEEEECcCcHHHHHHHHHHHcCCCcccccccccc
Confidence 478899999999999999999999 55665656553 8999 7999999999999999999981 255
Q ss_pred HHHHhh-hhhcCCC---CCCCCCCCCcCcccccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccC
Q 006816 73 LEDLKR-LCKMGSR---TPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAM 148 (630)
Q Consensus 73 ~~~l~~-~r~~~s~---~~g~p~~~~~~~~~~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~ 148 (630)
.++|++ |||+ |. ++|||. ..+||++.++|+||||++.|+|+|+.+ ++.+|||++|||+.+
T Consensus 143 ~e~Lk~lfrqf-s~~gg~pgHp~-~~tpGve~~tG~LGqGls~AvG~A~~~--------------~~~~v~~~~GDGe~e 206 (845)
T 3ahc_A 143 EAGLQKFFRQF-SYPGGIPSHFA-PETPGSIHEGGELGYALSHAYGAVMNN--------------PSLFVPCIIGDGEAE 206 (845)
T ss_dssp HHHHHHHHHHB-TCTTSBCSSCC-TTSTTCSCCCSSTTCHHHHHHHHHTTC--------------TTCEEEEEEETTGGG
T ss_pred HHHHHHHHHhc-cCCCCCCCCCC-CCCCCeecCCCCccchHhHHhhhhhcC--------------CCCeEEEEECCCchh
Confidence 788988 7887 55 799997 589999999999999999999999644 788999999999999
Q ss_pred chh---HHHHHHHhHHcCCCcEEEEEECCCCcccccccc--cChhcHHHHHHhCCCeEE-EEeCC-CC-CHHHHHHHHH-
Q 006816 149 EGI---SHEAAALAAHWKLNKLTLIYDDNHNTIDGPTSL--VLSEDISARFKSLGWNTI-MVENI-HD-NLSSFKEALM- 219 (630)
Q Consensus 149 eG~---~~eal~~a~~~~L~~li~i~~~N~~~i~~~~~~--~~~~~~~~~~~a~G~~~~-~v~dG-~~-d~~~l~~al~- 219 (630)
+|. .||+.+++..++|+||++|+|+|+++|++++.. ...+++.++|++|||+++ .| || |. |+++|.+++.
T Consensus 207 ~GsLAg~wea~~~~~~~~l~nl~~i~D~N~~~i~g~t~l~~~~~e~l~~rf~a~Gw~v~~~v-dG~~~~D~~~i~~a~~~ 285 (845)
T 3ahc_A 207 TGPLATGWQSNKLVNPRTDGIVLPILHLNGYKIANPTILARISDEELHDFFRGMGYHPYEFV-AGFDNEDHMSIHRRFAE 285 (845)
T ss_dssp SHHHHHHGGGGGSCCTTTSCEEEEEEEECSBSSSSBCHHHHSCHHHHHHHHHHTTEEEEEEE-CSSSSCCHHHHHHHHHH
T ss_pred hhcchhhhHHhhhhhhhcCCCEEEEEECCCCcCCCCccccccCcHHHHHHHHHCCCEEeEEe-CCCCCcCHHHHHHHHHH
Confidence 999 999999999999999999999999999999974 347899999999999999 76 99 53 7888887754
Q ss_pred --------------HHHh-cCCCc--EEEEEeeccccc------CcccCCC----CCCC--h--HHHHHHHHhhhhchhH
Q 006816 220 --------------AAAN-ETKKP--TFIRVKKMRERV------NWVDRDQ----FHVI--P--MVYREMQIQTDHGERL 268 (630)
Q Consensus 220 --------------~a~~-~~~~P--~~i~~~t~k~~~------g~~~~~~----~~~~--~--~~~~~~~~~~~~~~~~ 268 (630)
+|++ ..++| ++|+++|.||+- |. +.++ |..| . +..+..+.
T Consensus 286 al~~~~~~i~~i~~~A~~~~~~kP~w~~Ii~rT~kG~tgp~~~~G~-~~eg~~~~H~~pl~~~~~~~~~~~~-------- 356 (845)
T 3ahc_A 286 LFETIFDEICDIKAAAQTDDMTRPFYPMLIFRTPKGWTCPKFIDGK-KTEGSWRAHQVPLASARDTEEHFEV-------- 356 (845)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSSCCCEEEEEEECCTTTTSCSEETTE-ECTTSGGGSSCSCTTTTTCHHHHHH--------
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCeEEEEECcccCCCCCCCCCc-ccCCCccccCCCCCCcccCHHHHHH--------
Confidence 2332 13689 999999999971 32 2221 2222 1 11122221
Q ss_pred HHHHHHHHHh-------------hhhcCCchhHhH---HHHhcCCCCCCccccCCCCC-----------CCCCCchHHHH
Q 006816 269 EKEWCSKVYN-------------YRSKYPHEGAEL---DLLLNGGLLPGWENALPKWS-----------TSDPLDATRGY 321 (630)
Q Consensus 269 ~~~~~~~~~~-------------~~~~~~~~~~~~---~~~~~~~~p~~~~~~~~~~~-----------~~~~~~~~r~a 321 (630)
...|...... +....+.-...+ .....+.+|..+ .+|.+. ++..+...+.+
T Consensus 357 l~~wl~~~~p~elF~~~~~~~~~~~~~~~~g~~r~~~~P~~~~g~l~~~~--~lp~~~~~~~~~~~~~~~g~~~~~atra 434 (845)
T 3ahc_A 357 LKGWMESYKPEELFNADGSIKDDVTAFMPKGELRIGANPNANGGVIREDL--KLPELDQYEVTGVKEYGHGWGQVEAPRA 434 (845)
T ss_dssp HHHHHHHTCGGGTBCTTSCBCHHHHTTSCCGGGSTTTCGGGGGGGTCCCC--CCCCGGGGCCTHHHHHCTTEEEECTHHH
T ss_pred HhhhccCCCchhccCCchHHHHHHHHhCcchHhHhhhCHHhcCCcCcccc--CCCChHhhhccccccccCCccchhHHHH
Confidence 1223211000 000001000000 000012223222 233321 12112333456
Q ss_pred HHHHHHHHHHhCCC-eEEEecCCCCCccccc--cccc-CcCCCCCC--C--------CCccccccchHHHHHHHHHHHhc
Q 006816 322 SEKCLNQLAKVLPG-LIGGSADLASSNKAYL--LGYH-DFSQPDSP--W--------GRNIRYGVREHAMAGISNGVALH 387 (630)
Q Consensus 322 ~~~~L~~l~~~~~~-iv~~~aD~~~s~~~~~--~~~~-~f~~~~~~--p--------~R~~~~gIaE~~~vg~a~GlA~~ 387 (630)
++++|.++++.+|+ ++++++|+.+|+++.. +.++ .+ ....+ | +|||+ ||+||+|+|+++|||++
T Consensus 435 ~g~~L~~l~~~~p~~~vv~sADl~~Sn~t~~f~~~t~~~~-~~~~~~~P~d~~~~~~GR~i~-GI~Eh~M~gia~Glal~ 512 (845)
T 3ahc_A 435 LGAYCRDIIKNNPDSFRIFGPDETASNRLNATYEVTDKQW-DNGYLSGLVDEHMAVTGQVTE-QLSEHQCEGFLEAYLLT 512 (845)
T ss_dssp HHHHHHHHHHHSTTTEEEEESSCTTTTTCGGGGGTCCEEC-CSCCCCTTTCCSEESSCSEEE-CSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcEEEEecCCCccccHHHHHhhccccc-ccccccCCcccccCCCCcEee-eecHHHHHHHHHHHHhc
Confidence 78999999999999 9999999999998752 3310 00 01114 5 89999 99999999999999999
Q ss_pred CCCCceEeeehHHHH---HhhHHH----HHHh-ccc----CC-CeEEEEecCCCCCCCCCCCCCChhhhHHhh-----cC
Q 006816 388 GGGLIPFAATFLIFS---DYMKNS----IRLS-ALS----HA-GVIYILTHDSIGLGEDGPTHQPVEQLAGLR-----AV 449 (630)
Q Consensus 388 G~~~~pv~~~~~~F~---~~a~dq----i~~~-a~~----~~-pv~~v~~~~g~~~g~~G~tHq~~~d~a~l~-----~i 449 (630)
| .+||+.+|++|+ +|+++| ||++ +++ .. +|++++||+++++|+||+|||+++.+.+++ .+
T Consensus 513 G--~~~f~~t~atFl~~~~~a~~q~akwiR~a~a~~~wr~~~~~v~~v~Th~si~~GeDGpTHQ~~e~~d~l~~~r~~~i 590 (845)
T 3ahc_A 513 G--RHGIWSSYESFVHVIDSMLNQHAKWLEATVREIPWRKPISSVNLLVSSHVWRQDHNGFSHQDPGVTSLLINKTFNND 590 (845)
T ss_dssp T--CEEEEEEEHHHHGGGHHHHHHHHHHHHHHHHHCTTSCCCBCEEEEEESCGGGCTTTCGGGCCCTHHHHHGGGCCTTC
T ss_pred C--CCCceecchhhhchhhhHHHHHHHHHHhhHHhhhhcccCCceEEEEeCCceeecCCCCCCCCcHHHHHHHHhhccCC
Confidence 9 899999888887 799999 9998 665 45 699999999999999999999965554444 66
Q ss_pred CCcEEEecCChHHHHHHHHHHHHcCCCcEEEEEcCCCcccccCCCcc--cccccccEEEecCC-C--CCCCcEEEEEeCc
Q 006816 450 PRLLAFRPADGNETAGSYRVAIANRDVPSVIALSRQKIAANLEGTSA--DEVERGGYIVSDNS-S--ENKPEIILIGTGT 524 (630)
Q Consensus 450 P~l~v~~P~d~~e~~~~l~~a~~~~~~P~~ir~~r~~~~~~~~~~~~--~~~~~G~~~~~~~~-~--~G~~dvtiva~G~ 524 (630)
||++||+|+|++|+..+++.|+++++.|++++++|++. |+++.... ..+..|+|++...| + ++++||+||++|+
T Consensus 591 Pn~~V~~PaDanet~~a~~~al~~~~~~~v~v~sRq~~-p~~~~~~~a~~~~~~G~~v~~~as~d~~g~~~DVvLiAtGs 669 (845)
T 3ahc_A 591 HVTNIYFATDANMLLAISEKCFKSTNKINAIFAGKQPA-PTWVTLDEARAELEAGAAEWKWASNAENNDEVQVVLASAGD 669 (845)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCBSCEEEEECCCSCE-EECSCHHHHHHHHHHSEEECTTTCCCSSTTTCSEEEEEESH
T ss_pred CCeEEEeCCCHHHHHHHHHHHHHcCCCeEEEEecCCCC-CccCCchhhhhhhcCCeEEEEeecccccCCCCCEEEEEecc
Confidence 99999999999999999999999844444444599999 88765321 25789999988211 2 2238999999997
Q ss_pred hH-HHHHHHHHHHHhcCCceEEEEcccccccCcccHHHHhccCCC-C-CeeEEEEecCCc---cccc----ccc-----c
Q 006816 525 EL-SLCEGTAKTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLPS-R-VVKRVSVEAGSS---VGWR----EYV-----G 589 (630)
Q Consensus 525 ~v-~~a~~aa~~L~~~gi~~~Vi~~~~i~pld~~~~~~~~~v~~~-~-~~~~v~vEe~~~---~g~~----~~~-----~ 589 (630)
++ .+|++|++.|+++||+++||||+++.+++.+... ...+.. . ..+ +++|++.. .|.+ +++ .
T Consensus 670 ev~~EAL~AA~~L~~~GI~vRVVsm~~lf~lqp~~~~--~~~ls~~~~~~l-~T~e~h~i~~~gGlgsaV~ell~~r~~~ 746 (845)
T 3ahc_A 670 VPTQELMAASDALNKMGIKFKVVNVVDLLKLQSRENN--DEALTDEEFTEL-FTADKPVLFAYHSYAQDVRGLIYDRPNH 746 (845)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEECBGGGGSCTTTC--TTSCCHHHHHHH-HCSSSCEEEEESSCHHHHHHHTTTSTTG
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEeCCCCccCCcccc--ccccCHHHhCcE-eecCCcceeeecCcHHHHHHHHHhCCCC
Confidence 75 5699999999999999999999999544433211 001110 0 123 66777664 2222 221 1
Q ss_pred CcceEEEeccCCCCCCHHHHHHHcCCChHHHHHHHHHhh
Q 006816 590 VEGKVIGVEEFGASGAYLDTFKKYGFTIDNVTKVARSLL 628 (630)
Q Consensus 590 ~~~~~~g~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l 628 (630)
.++.++|+..|+.+|++.+|++++|||.++|++++++++
T Consensus 747 ~~l~v~G~~d~G~tgtp~eLl~~~gld~~~Iv~~a~~~l 785 (845)
T 3ahc_A 747 DNFHVVGYKEQGSTTTPFDMVRVNDMDRYALQAAALKLI 785 (845)
T ss_dssp GGEEEECCCSCCCSCCHHHHHHTTTCSHHHHHHHHHHHH
T ss_pred ceEEEEeccCCCCCCCHHHHHHHhCcCHHHHHHHHHHHc
Confidence 256789995599999999999999999999999999876
No 16
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=100.00 E-value=2.4e-57 Score=526.19 Aligned_cols=497 Identities=13% Similarity=0.047 Sum_probs=333.8
Q ss_pred ccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEccccc-CchhHHHHHHHhHHcCCC--cEEEEEECCCC
Q 006816 100 VTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCA-MEGISHEAAALAAHWKLN--KLTLIYDDNHN 176 (630)
Q Consensus 100 ~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~-~eG~~~eal~~a~~~~L~--~li~i~~~N~~ 176 (630)
+.++++|+++|+|+|+|+|.++++.+++ ..+.++||++|||++ ++|++||+||+|+.+++| .+|+||+||+|
T Consensus 318 ~~~shlg~~~p~A~G~A~A~~~~~~~~~-----~~~~~vv~v~GDGa~a~qG~~~Ealn~A~~~~lp~gg~I~vv~nN~~ 392 (933)
T 2jgd_A 318 FNPSHLEIVSPVVIGSVRARLDRLDEPS-----SNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQV 392 (933)
T ss_dssp CCCSSTTCHHHHHHHHHHHHHTTSSSCC-----GGGEEEEEEEEHHHHHHCTHHHHHHHHTTSTTTCCSCCEEEEEECC-
T ss_pred ccCcccccccCHHHHHHHHHHhhccccC-----CCCeEEEEEECCcccccCCHHHHHHHHhhccCCCCCceEEEEEeCCc
Confidence 6678999999999999999987632211 156899999999998 899999999999999998 25666679999
Q ss_pred cccc-cccccC-hhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHh---cCCCcEEEEEeecccccCcccCC-CCCC
Q 006816 177 TIDG-PTSLVL-SEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAAN---ETKKPTFIRVKKMRERVNWVDRD-QFHV 250 (630)
Q Consensus 177 ~i~~-~~~~~~-~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~---~~~~P~~i~~~t~k~~~g~~~~~-~~~~ 250 (630)
++++ ++.... ..++.+++++|||+++.| ||+ |++++.+++++|++ ..++|++|++.|+|.+ ||+..+ +-++
T Consensus 393 ~ist~~~~~~~~~~~~~~~a~a~g~p~~~V-dG~-D~~av~~a~~~A~e~~r~~~~P~lIe~~tyR~~-GH~~~D~~~yr 469 (933)
T 2jgd_A 393 GFTTSNPLDARSTPYCTDIGKMVQAPIFHV-NAD-DPEAVAFVTRLALDFRNTFKRDVFIDLVCYRRH-GHNEADEPSAT 469 (933)
T ss_dssp --------------CGGGGGGTTTCCEEEE-ETT-CHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC------------
T ss_pred cccCCCHHhcccchhHHHHHHHcCCCEEEE-CCC-CHHHHHHHHHHHHHHHHhcCCCEEEEEeeeeec-CcCcccchhhC
Confidence 9999 776433 456778899999999999 999 99999999887752 1579999999999998 997543 2344
Q ss_pred ChHHHHHHHHh----------h-hhchhHHHHHHHHHHhhh----hcCCc-hh--Hh--HHHHhcCCCCC----Ccccc-
Q 006816 251 IPMVYREMQIQ----------T-DHGERLEKEWCSKVYNYR----SKYPH-EG--AE--LDLLLNGGLLP----GWENA- 305 (630)
Q Consensus 251 ~~~~~~~~~~~----------~-~~~~~~~~~~~~~~~~~~----~~~~~-~~--~~--~~~~~~~~~p~----~~~~~- 305 (630)
++++++.|++. + ++|..++++|.+..+++. +.... .. .. ....+.+..|. ++...
T Consensus 470 ~~~e~~~~~~~~dPi~~~~~~Li~~Gv~t~~~~~~i~~~~~~~v~~a~~~A~~~~p~~~~~~~~~~~~~~~~~~~~~tg~ 549 (933)
T 2jgd_A 470 QPLMYQKIKKHPTPRKIYADKLEQEKVATLEDATEMVNLYRDALDAGDCVVAEWRPMNMHSFTWSPYLNHEWDEEYPNKV 549 (933)
T ss_dssp CCTTHHHHHTSCCHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHTSCCCTTEECCCGGGCTTGGGSSCCTTCCCCCCC
T ss_pred CHHHHHHHHccCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhcccccccccccCCCCCC
Confidence 55666666652 1 345444555443322211 10000 00 00 00001100000 00000
Q ss_pred ---------------CCCCCC----------------CCCCchHHHHHHHHHHHHHHhCCCeEEEecCCCCCcc------
Q 006816 306 ---------------LPKWST----------------SDPLDATRGYSEKCLNQLAKVLPGLIGGSADLASSNK------ 348 (630)
Q Consensus 306 ---------------~~~~~~----------------~~~~~~~r~a~~~~L~~l~~~~~~iv~~~aD~~~s~~------ 348 (630)
.+.|+. +++..+...+++.+|.++++++++|+++++|++.+++
T Consensus 550 ~~~~l~~i~~~~~~~p~~~~~~~~v~~~~~~R~~~~~~~~~~dw~~~e~~al~~l~~~~~~V~~~g~Dv~~gTfs~rh~v 629 (933)
T 2jgd_A 550 EMKRLQELAKRISTVPEAVEMQSRVAKIYGDRQAMAAGEKLFDWGGAENLAYATLVDEGIPVRLSGEDSGRGTFFHRHAV 629 (933)
T ss_dssp CHHHHHHHHHHTTCCCTTSCCCHHHHHHHHHHHHHHTTSSCBCHHHHHHHHHHHHHTTTCCEEEEETTTTTCTTSCCCCS
T ss_pred CHHHHHHHHhhhcCCCCCCcccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhcCCCEEEECCccCCcchhhhhhh
Confidence 011110 0112344567888999999999999999999987633
Q ss_pred -------cccccccCcCCCCCC-CCCccccccchHHHHHHHHHHHhcCCCCc--eEee-ehHHHHH---hhHHHHHHh--
Q 006816 349 -------AYLLGYHDFSQPDSP-WGRNIRYGVREHAMAGISNGVALHGGGLI--PFAA-TFLIFSD---YMKNSIRLS-- 412 (630)
Q Consensus 349 -------~~~~~~~~f~~~~~~-p~R~~~~gIaE~~~vg~a~GlA~~G~~~~--pv~~-~~~~F~~---~a~dqi~~~-- 412 (630)
..+..+..| + ++| |+||||+||||++++|+|+|||+.| ++ ||++ +|++|++ |++|||++.
T Consensus 630 ~~d~~~g~~~~~l~~l-~-~~~gp~rv~ds~IaE~~~vg~a~G~A~~G--~~~lpv~e~qf~dF~~~AQra~DQii~~~~ 705 (933)
T 2jgd_A 630 IHNQSNGSTYTPLQHI-H-NGQGAFRVWDSVLSEEAVLAFEYGYATAE--PRTLTIWEAQFGDFANGAQVVIDQFISSGE 705 (933)
T ss_dssp EECSSSSCEECGGGCS-C-TTCCCEEEECCCSCHHHHHHHHHHHHHHC--TTSEEEEEC-CGGGGGGGHHHHHHTTTTHH
T ss_pred cccccCCceeechHHH-H-HHcCCCeEEECCcCHHHHHHHHHHHHhcC--CCCCCEEEEEEhhhhcccHHHHHHHHHHHH
Confidence 234456778 4 688 9999999999999999999999999 87 9986 7999997 999999864
Q ss_pred c--ccCCCeEEEEecCCCCCCCCCCCCCC--hhhhHHhhcCCCcEEEecCChHHHHHHHHHHH-HcCCCcEEEEEcCCCc
Q 006816 413 A--LSHAGVIYILTHDSIGLGEDGPTHQP--VEQLAGLRAVPRLLAFRPADGNETAGSYRVAI-ANRDVPSVIALSRQKI 487 (630)
Q Consensus 413 a--~~~~pv~~v~~~~g~~~g~~G~tHq~--~~d~a~l~~iP~l~v~~P~d~~e~~~~l~~a~-~~~~~P~~ir~~r~~~ 487 (630)
+ .+++||++++.| |+ .| .|++||+ +|++..++++|||+|++|+|+.|++++|++++ +..++|++||+||..+
T Consensus 706 ak~~~~~~vv~~l~~-G~-~g-~G~~Hss~~~E~~l~~~~~pnm~V~~Pst~~e~~~lLr~a~~~~~~~Pvii~~pk~l~ 782 (933)
T 2jgd_A 706 QKWGRMCGLVMLLPH-GY-EG-QGPEHSSARLERYLQLCAEQNMQVCVPSTPAQVYHMLRRQALRGMRRPLVVMSPKSLL 782 (933)
T ss_dssp HHHCCCCCCEEEEEC-CC-SS-SCTTSSCCCHHHHHHTCCTTCCEEECCCSHHHHHHHHHHHHHSSCCCCEEEEECSGGG
T ss_pred HHHccCCCEEEEEeC-CC-CC-CCcccccchHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHHHhcCCCcEEEEecchhc
Confidence 4 469999999865 33 34 4999998 55555556779999999999999999999985 5337999999998753
Q ss_pred ccc---cCC-----CcccccccccEEEecCCCCCCCcE--EEEEeCchHHHHHHHHHHHHhcCCceEEEEcccccccCcc
Q 006816 488 AAN---LEG-----TSADEVERGGYIVSDNSSENKPEI--ILIGTGTELSLCEGTAKTLRQEGRRVRVVSLVCWRLFDRQ 557 (630)
Q Consensus 488 ~~~---~~~-----~~~~~~~~G~~~~~~~~~~G~~dv--tiva~G~~v~~a~~aa~~L~~~gi~~~Vi~~~~i~pld~~ 557 (630)
.. .+. ...+.+++|++.+++ | +|| +|+++|.+...+++|++.|+++ +++|||+++|+|||.+
T Consensus 783 -r~~~~~~~~~~~~~~~f~~~ig~~~~~~----g-~dV~~vI~~~G~v~~~l~aa~~~l~~~--~v~VIdl~~l~Pld~e 854 (933)
T 2jgd_A 783 -RHPLAVSSLEELANGTFLPAIGEIDELD----P-KGVKRVVMCSGKVYYDLLEQRRKNNQH--DVAIVRIEQLYPFPHK 854 (933)
T ss_dssp -GCTTCCBCHHHHHHCCCCSEECCCSCCC----G-GGCCEEEEECTTHHHHHHHHHHHTTCC--SEEEEEECEEESCCHH
T ss_pred -cCCCCcCCccccCCCceeecCCcceEee----c-CcceEEEEEchHHHHHHHHHHHHcccC--CeEEEEeeccCCCCHH
Confidence 21 110 012334566665544 5 789 5556565555555666888654 8999999999999999
Q ss_pred cHHHHhccCCCCC--eeEEEEecCCcccc-c----cc----c--cCcceEEEe-ccCCCCCCHHHHHHHcCCChHHHHHH
Q 006816 558 PAEYKEKVLPSRV--VKRVSVEAGSSVGW-R----EY----V--GVEGKVIGV-EEFGASGAYLDTFKKYGFTIDNVTKV 623 (630)
Q Consensus 558 ~~~~~~~v~~~~~--~~~v~vEe~~~~g~-~----~~----~--~~~~~~~g~-d~f~~~g~~~~l~~~~gl~~~~I~~~ 623 (630)
++. +++.+++. ++ |++||+...|+ + .+ . ..+++++|. |.|.+... +.+.+....+.|+++
T Consensus 855 ~i~--~~~~k~~~~~~v-v~veE~~~~gG~g~~v~~~l~~~~~~~~~v~~vg~~d~~~pa~g---~~~~h~~~~~~i~~~ 928 (933)
T 2jgd_A 855 AMQ--EVLQQFAHVKDF-VWCQEEPLNQGAWYCSQHHFREVIPFGASLRYAGRPASASPAVG---HMSVHQKQQQDLVND 928 (933)
T ss_dssp HHH--HHHGGGTTCCEE-EEEEEEETTSTTHHHHHHHHHTTSCTTCEEEEEEECCCSSSSCS---CHHHHHHHHHHHHHH
T ss_pred HHH--HHHHhCCCCceE-EEEecCCCcCCHHHHHHHHHHHhcccCCceEEEecCCcCCCCcC---CHHHHHHHHHHHHHH
Confidence 876 45555442 45 99999887664 2 11 1 246789999 88877432 233344556777776
Q ss_pred HH
Q 006816 624 AR 625 (630)
Q Consensus 624 i~ 625 (630)
+.
T Consensus 929 a~ 930 (933)
T 2jgd_A 929 AL 930 (933)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 17
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=100.00 E-value=6.7e-58 Score=528.22 Aligned_cols=487 Identities=15% Similarity=0.066 Sum_probs=336.4
Q ss_pred ccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEccccc-CchhHHHHHHHhHHcCCC--cEEEEEECCCC
Q 006816 100 VTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCA-MEGISHEAAALAAHWKLN--KLTLIYDDNHN 176 (630)
Q Consensus 100 ~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~-~eG~~~eal~~a~~~~L~--~li~i~~~N~~ 176 (630)
..+++||+++|.|+|+|+|.++++...++++....+..+||++|||++ +||.+||+|++|+.++|| ++++||+||+|
T Consensus 242 ~n~s~Lg~~~P~A~G~A~A~k~~~~~~~~~~~~~~~~~vv~~~GDGa~~~eG~v~Ealn~A~~~~lp~g~vi~iv~NN~~ 321 (868)
T 2yic_A 242 ANPSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQI 321 (868)
T ss_dssp CCCSSTTTTHHHHHHHHHHHHHHHTCSTTSSSCSCCEEEEEEEEHHHHHHCHHHHHHHTTTTCTTTCCSCCEEEEEECSC
T ss_pred CCCccccccccHHHHHHHHHHhhccCCcccccccCCceEEEEECCcccccccHHHHHHHHHHhcCCCCCCeEEEEEcCCc
Confidence 346899999999999999998875322211111246799999999996 899999999999999999 89999999999
Q ss_pred ccccccccc-ChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHh---cCCCcEEEEEeecccccCcccCCC-CCCC
Q 006816 177 TIDGPTSLV-LSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAAN---ETKKPTFIRVKKMRERVNWVDRDQ-FHVI 251 (630)
Q Consensus 177 ~i~~~~~~~-~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~---~~~~P~~i~~~t~k~~~g~~~~~~-~~~~ 251 (630)
++++++... ..+++.+++++|||+++.| ||+ |++++.+++++|.+ ..++|++|++.|+|++ ||+..|+ .++.
T Consensus 322 g~st~~~~~~s~~~~~~~a~a~G~p~~~V-dG~-D~~av~~a~~~A~~~ar~~~~PvlIe~~tyR~~-GHs~~D~p~~~~ 398 (868)
T 2yic_A 322 GFTTAPTDSRSSEYCTDVAKMIGAPIFHV-NGD-DPEACAWVARLAVDFRQAFKKDVVIDMLCYRRR-GHNEGDDPSMTQ 398 (868)
T ss_dssp BTTBCHHHHCSSSSTTGGGGGGTCCEEEE-ETT-CHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCS-CSSTTCCGGGTC
T ss_pred ccccCccccccccCHHHHHHhCCCcEEEE-eCC-CHHHHHHHHHHHHHHHHhCCCCEEEEEEeecCC-CcCcccccccCC
Confidence 999976422 2345667899999999999 999 99999999887752 1579999999999999 9976553 2233
Q ss_pred hHHHHHH----------HHhh-hhchhHHHHHHHHHHhhhhc--------------CCchhHhHHHHhcCCCCCCcc---
Q 006816 252 PMVYREM----------QIQT-DHGERLEKEWCSKVYNYRSK--------------YPHEGAELDLLLNGGLLPGWE--- 303 (630)
Q Consensus 252 ~~~~~~~----------~~~~-~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~p~~~~--- 303 (630)
+++++.| ++.+ ++|..+++++.+..+++... .+.....+...+.. +..++
T Consensus 399 p~~~~~~~~~~dPi~~~~~~L~~~G~~t~ee~~~i~~e~~~~v~~a~~~a~~~~p~~~~~~~~~~~~~~~--~~~~~t~~ 476 (868)
T 2yic_A 399 PYMYDVIDTKRGSRKAYTEALIGRGDISMKEAEDALRDYQGQLERVFNEVRELEKHEIEPSESVEADQQI--PSKLATAV 476 (868)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------------CCCCC
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccccccc--ccCCCCcc
Confidence 3333333 3332 34443333333221111100 00000000000000 00000
Q ss_pred -------------ccCCCCCCCCCC---chHHH----------HHHHHHH--HHHHhCCCeEEEecCCCCCcc-------
Q 006816 304 -------------NALPKWSTSDPL---DATRG----------YSEKCLN--QLAKVLPGLIGGSADLASSNK------- 348 (630)
Q Consensus 304 -------------~~~~~~~~~~~~---~~~r~----------a~~~~L~--~l~~~~~~iv~~~aD~~~s~~------- 348 (630)
...+.|....+- ...|. +++++|. .+++++++|+++++|++.+++
T Consensus 477 ~~~~l~~~~~~~~~~p~~~~~~~~v~~~~~~R~~m~~~~~i~~a~~e~la~~~l~~~~~~V~~~G~Dv~~~Tfs~rh~v~ 556 (868)
T 2yic_A 477 DKAMLQRIGDAHLALPEGFTVHPRVRPVLEKRREMAYEGRIDWAFAELLALGSLIAEGKLVRLSGQDTQRGTFTQRHAVI 556 (868)
T ss_dssp CHHHHHHHHHHTTCCCTTCCCCTTTHHHHHHHHHHHHHCCBCHHHHHHHHHHHHHHTTCEEEEEETTTTTCTTSCCCSSE
T ss_pred CHHHHHHHHHhhccCCcccccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhcCCCEEEEcCcCCccchhhcchhc
Confidence 011122211111 12232 3444433 668999999999999987643
Q ss_pred ------cccccccCc------CCCCCCCCCccccccchHHHHHHHHHHHhcCCCCceEee-ehHHHHHhh---HHHHHHh
Q 006816 349 ------AYLLGYHDF------SQPDSPWGRNIRYGVREHAMAGISNGVALHGGGLIPFAA-TFLIFSDYM---KNSIRLS 412 (630)
Q Consensus 349 ------~~~~~~~~f------~~~~~~p~R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~-~~~~F~~~a---~dqi~~~ 412 (630)
..+..+..| . ++.+|+||||+||||++++|+|+|||+.|...+|+++ +|++|++++ +||+++.
T Consensus 557 ~d~~~g~~~~~~~~l~~~~~~~-~~~~p~Rv~ds~IsE~~~vG~a~G~A~~G~~~~~i~eaqf~dF~~~AQ~~~DQ~i~~ 635 (868)
T 2yic_A 557 VDRKTGEEFTPLQLLATNPDGT-PTGGKFLVYNSALSEFAAVGFEYGYSVGNPDAMVLWEAQFGDFVNGAQSIIDEFISS 635 (868)
T ss_dssp ECTTTCCEECGGGGGGBCTTSC-BCSCEEEEEECCSCSHHHHHHHHHHHHHCTTSEEEEECSSGGGGGGGHHHHHHTTTT
T ss_pred cccCCCceecchhhhcccccch-hhcCCcEEEECCccHHHHHHHHHHHHccCCCCceEEEEehHHHHhhHHHHHHHHHHH
Confidence 223334444 2 2468999999999999999999999999922344554 799999987 9998775
Q ss_pred c----ccCCCeEEEEecCCCCCCCCCCCCCC--hhhhHHhhcCCCcEEEecCChHHHHHHHHHHHHc-CCCcEEEEEcCC
Q 006816 413 A----LSHAGVIYILTHDSIGLGEDGPTHQP--VEQLAGLRAVPRLLAFRPADGNETAGSYRVAIAN-RDVPSVIALSRQ 485 (630)
Q Consensus 413 a----~~~~pv~~v~~~~g~~~g~~G~tHq~--~~d~a~l~~iP~l~v~~P~d~~e~~~~l~~a~~~-~~~P~~ir~~r~ 485 (630)
+ ++++||++++.|.+ .| +|++|++ +|++..|+++|||+|++|+|+.|++++|++++.. .++|++|++||.
T Consensus 636 ~~~k~~~~~~vvi~~p~G~--~G-~Gp~Hs~~~~E~~l~l~~~pnm~V~~Ps~p~~~~~lLr~a~~~~~~~Pvii~~pk~ 712 (868)
T 2yic_A 636 GEAKWGQLSDVVLLLPHGH--EG-QGPDHTSGRIERFLQLWAEGSMTIAMPSTPANYFHLLRRHGKDGIQRPLIVFTPKS 712 (868)
T ss_dssp HHHHHCCCCCCEEEEECCC--SS-SCTTSSCCCHHHHHHHCCTTSCEEECCCSHHHHHHHHHHHHHSSCCCCEEEEECSG
T ss_pred HHHHhCCCCCEEEEecCCC--CC-CChhhcCCcHHHHHhcCCCCCCEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEechH
Confidence 3 56999999987654 57 8999987 7887777999999999999999999999998886 139999999987
Q ss_pred Ccccc---cCC-----CcccccccccEEE---ecCCCCCCCcE--EEEEeCchHHHHHHHHHHHHhcC-CceEEEEcccc
Q 006816 486 KIAAN---LEG-----TSADEVERGGYIV---SDNSSENKPEI--ILIGTGTELSLCEGTAKTLRQEG-RRVRVVSLVCW 551 (630)
Q Consensus 486 ~~~~~---~~~-----~~~~~~~~G~~~~---~~~~~~G~~dv--tiva~G~~v~~a~~aa~~L~~~g-i~~~Vi~~~~i 551 (630)
.+ .. .+. ...+..++|+..+ ++ + | +|| |||++|.+ ..++++++ +++| ++++|||+++|
T Consensus 713 ll-R~~~~~~~~~~~~~~~f~~~ig~~~~~~~l~--~-g-~dv~r~Ii~~G~~-~~~l~aa~--~~~g~i~v~VIdl~~l 784 (868)
T 2yic_A 713 ML-RNKAAVSDIRDFTESKFRSVLEEPMYTDGEG--D-R-NKVTRLLLTSGKI-YYELAARK--AKENREDVAIVRIEQL 784 (868)
T ss_dssp GG-GCTTSCBCHHHHHSCCCCSEECCHHHHTSSC--C-G-GGCCEEEEECSTH-HHHHHHHH--HHHTCTTEEEEEECEE
T ss_pred Hh-CCCCCCCCccccCCCCceecCCcceeecccc--c-C-CceeEEEEEecHH-HHHHHHHH--HhCCCCCEEEEEeeec
Confidence 43 11 110 0012225677654 23 3 6 899 99999998 77777766 6678 99999999999
Q ss_pred cccCcccHHHHhccCCCCC--eeEEEEecCCcccc-c--------cc---ccCcceEEEe-ccCCC-CCCH
Q 006816 552 RLFDRQPAEYKEKVLPSRV--VKRVSVEAGSSVGW-R--------EY---VGVEGKVIGV-EEFGA-SGAY 606 (630)
Q Consensus 552 ~pld~~~~~~~~~v~~~~~--~~~v~vEe~~~~g~-~--------~~---~~~~~~~~g~-d~f~~-~g~~ 606 (630)
+|||.+++. +++.+++. .+ |++||+...|+ + +. ++.+++++|. |.|.+ +|..
T Consensus 785 ~Pld~~~i~--~~~~k~~~~~~v-v~veE~~~~gG~g~~v~~~l~e~~~~l~~~v~~vg~~d~~~p~~g~~ 852 (868)
T 2yic_A 785 APLPRRRLA--ETLDRYPNVKEK-FWVQEEPANQGAWPSFGLTLPEILPDHFTGLKRISRRAMSAPSSGSS 852 (868)
T ss_dssp ESCCHHHHH--HHHHTCTTCCEE-EEEEEEETTSTTHHHHHHHHHHHCHHHHTTCEEEEECCCSSSSCSCH
T ss_pred CCCCHHHHH--HHHHhcCCCceE-EEEEeCCCCCCcHHHHHHHHHHHhhhcCCCeEEeccCCcCCCCCCCH
Confidence 999999876 56767663 25 88888776553 2 11 2357889999 88887 4443
No 18
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=100.00 E-value=1.7e-56 Score=528.50 Aligned_cols=488 Identities=15% Similarity=0.072 Sum_probs=335.0
Q ss_pred ccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEccccc-CchhHHHHHHHhHHcCCC--cEEEEEECCCC
Q 006816 100 VTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCA-MEGISHEAAALAAHWKLN--KLTLIYDDNHN 176 (630)
Q Consensus 100 ~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~-~eG~~~eal~~a~~~~L~--~li~i~~~N~~ 176 (630)
..+|+||+++|.|+|+|+|.++++..+++++....+..+||++|||++ +||.+||++++|+.++|| ++|+||+||+|
T Consensus 487 ~n~s~Lg~~~p~A~G~A~A~k~~~~~~~~~~~~~~~~~~v~~~GDGa~~~eG~~~Ealn~A~~~~lp~g~vi~iv~NN~~ 566 (1113)
T 2xt6_A 487 ANPSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQI 566 (1113)
T ss_dssp CCCSSTTTTHHHHHHHHHHHHHHTTBSTTSSBSCCCEEEEEEEEHHHHHHCTHHHHHHTTTTCTTTCCSCCEEEEEECSC
T ss_pred CCCccccccccHHHHHHHHHHHhccccCccccccCCcEEEEEECCcccccccHHHHHHHHHhhcCCCCCCeEEEEEeCCc
Confidence 457899999999999999999876444332223357899999999996 899999999999999999 89999999999
Q ss_pred ccccccccc-ChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHh---cCCCcEEEEEeecccccCcccCCC-CCCC
Q 006816 177 TIDGPTSLV-LSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAAN---ETKKPTFIRVKKMRERVNWVDRDQ-FHVI 251 (630)
Q Consensus 177 ~i~~~~~~~-~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~---~~~~P~~i~~~t~k~~~g~~~~~~-~~~~ 251 (630)
++++++... ...++.+++++|||++++| ||+ |++++.+++++|.+ ..++|++|++.|+|++ ||+..|+ .++.
T Consensus 567 gist~~~~~~s~~~~~~~a~a~G~p~~~V-dG~-D~~av~~a~~~A~~~~r~~~~PvlIe~~tyR~~-GHs~~D~p~~~~ 643 (1113)
T 2xt6_A 567 GFTTAPTDSRSSEYCTDVAKMIGAPIFHV-NGD-DPEACAWVARLAVDFRQAFKKDVVIDMLCYRRR-GHNEGDDPSMTQ 643 (1113)
T ss_dssp BTTBCHHHHCSSSSTTGGGGGGTCCEEEE-ETT-CHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCS-CSSTTCCGGGTC
T ss_pred ccccCccccccccCHHHHHHhcCCcEEEE-cCC-CHHHHHHHHHHHHHHHHhcCCCEEEEEEeEccC-CcCCCCccccCC
Confidence 999975422 2234567899999999999 999 99999999887642 1579999999999999 9976553 2233
Q ss_pred hHHHH----------HHHHhh-hhchhHHHHHHHHHHhhhh----------c----CCchhHhHHHHhcCCCCCCccc--
Q 006816 252 PMVYR----------EMQIQT-DHGERLEKEWCSKVYNYRS----------K----YPHEGAELDLLLNGGLLPGWEN-- 304 (630)
Q Consensus 252 ~~~~~----------~~~~~~-~~~~~~~~~~~~~~~~~~~----------~----~~~~~~~~~~~~~~~~p~~~~~-- 304 (630)
++++. .|++.+ ++|..+++++.+..+++.. . .+.....+...+.+. ..++.
T Consensus 644 ~~~~~~~~~~~dpi~~~~~~L~~~G~~t~ee~~~i~~e~~~~v~~a~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~t~~ 721 (1113)
T 2xt6_A 644 PYMYDVIDTKRGSRKAYTEALIGRGDISMKEAEDALRDYQGQLERVFNEVRELEKHEIEPSESVEADQQIP--SKLATAV 721 (1113)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------------CCCCC
T ss_pred hHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccc--cCCCCcc
Confidence 33333 333332 3444333333222111100 0 000000000000000 00000
Q ss_pred -------------cCC-CCCCCCCC---chHHHH------HHHHH------HHHHHhCCCeEEEecCCCCCcc-------
Q 006816 305 -------------ALP-KWSTSDPL---DATRGY------SEKCL------NQLAKVLPGLIGGSADLASSNK------- 348 (630)
Q Consensus 305 -------------~~~-~~~~~~~~---~~~r~a------~~~~L------~~l~~~~~~iv~~~aD~~~s~~------- 348 (630)
..| .+....+- ...|.. +..++ ..+++++++|+++++|++.+++
T Consensus 722 ~~~~l~~~~~~~~~~p~~~~~~~~v~~~~~~r~~m~~~~~i~~a~~e~la~~~ll~~~~~V~l~GeDv~rgtfs~rh~v~ 801 (1113)
T 2xt6_A 722 DKAMLQRIGDAHLALPEGFTVHPRVRPVLEKRREMAYEGRIDWAFAELLALGSLIAEGKLVRLSGQDTQRGTFTQRHAVI 801 (1113)
T ss_dssp CHHHHHHHHHHTTCCCTTCCCCTTTHHHHHHHHHHHHHCCBCHHHHHHHHHHHHHHTTCEEEEEETTTTTCTTSCCCSSE
T ss_pred CHHHHHHHHHhhccCCcccccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhcCCCEEEEcccCCCccchhcchhe
Confidence 011 11111110 111211 12233 3558999999999999987652
Q ss_pred ------cccccccCc------CCCCCCCCCccccccchHHHHHHHHHHHhcCCCCceEee-ehHHHHHhh---HHHHHHh
Q 006816 349 ------AYLLGYHDF------SQPDSPWGRNIRYGVREHAMAGISNGVALHGGGLIPFAA-TFLIFSDYM---KNSIRLS 412 (630)
Q Consensus 349 ------~~~~~~~~f------~~~~~~p~R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~-~~~~F~~~a---~dqi~~~ 412 (630)
..+..+..| . ++.+|+||||+||||++++|+|+|||+.|...+|+++ +|++|++++ +||+++.
T Consensus 802 ~d~~~g~~~~~l~~l~~~~~~~-~~~~p~rv~ds~IsE~~~vg~a~G~A~~G~~~~~i~Eaqf~dF~~~aQ~~~DQ~i~~ 880 (1113)
T 2xt6_A 802 VDRKTGEEFTPLQLLATNPDGT-PTGGKFLVYNSALSEFAAVGFEYGYSVGNPDAMVLWEAQFGDFVNGAQSIIDEFISS 880 (1113)
T ss_dssp ECTTTCCEECGGGGGGBCTTSC-BCSCEEEEEECCSCSHHHHHHHHHHHHHCTTSEEEEECSSGGGGGGGHHHHHHTTTT
T ss_pred ecccCCceecchhccccccccc-hhcCCcEEEECCCCHHHHHHHHHHHHhcCCCCceEEEEEEHHHHhhhHHHHHHHHHH
Confidence 223344444 2 2467999999999999999999999999922334554 799999887 9998764
Q ss_pred ----cccCCCeEEEEecCCCCCCCCCCCCCC--hhhhHHhhcCCCcEEEecCChHHHHHHHHHHHHc-CCCcEEEEEcCC
Q 006816 413 ----ALSHAGVIYILTHDSIGLGEDGPTHQP--VEQLAGLRAVPRLLAFRPADGNETAGSYRVAIAN-RDVPSVIALSRQ 485 (630)
Q Consensus 413 ----a~~~~pv~~v~~~~g~~~g~~G~tHq~--~~d~a~l~~iP~l~v~~P~d~~e~~~~l~~a~~~-~~~P~~ir~~r~ 485 (630)
+++++||++++.|.+ .| +|++||+ +|+...|+++|||+|++|+|+.|++++|+.++.. .++|++|++||.
T Consensus 881 ~~~k~~~~~~vv~~lp~G~--~G-~G~~Hs~~~~E~~l~l~~~pnm~V~~Ps~~~~~~~lLr~a~~~~~~~Pvii~~pk~ 957 (1113)
T 2xt6_A 881 GEAKWGQLSDVVLLLPHGH--EG-QGPDHTSGRIERFLQLWAEGSMTIAMPSTPANYFHLLRRHGKDGIQRPLIVFTPKS 957 (1113)
T ss_dssp HHHHHCCCCCCEEEEECCC--SS-SCTTSSCCCHHHHHHHCCTTSCEEECCSSHHHHHHHHHHHHHSSCCCCEEEEECSG
T ss_pred HHHHhCCCCCEEEEeCCCC--CC-CChhhhcccHHHHHhcCCCCCcEEEecCCHHHHHHHHHHHHhccCCCCEEEEechH
Confidence 367999999986554 66 8999998 5555555999999999999999999999999886 239999999986
Q ss_pred Ccc-cc-cCC-----CcccccccccEEE---ecCCCCCCCcE--EEEEeCchHHHHHHHHHHHHhcC-CceEEEEccccc
Q 006816 486 KIA-AN-LEG-----TSADEVERGGYIV---SDNSSENKPEI--ILIGTGTELSLCEGTAKTLRQEG-RRVRVVSLVCWR 552 (630)
Q Consensus 486 ~~~-~~-~~~-----~~~~~~~~G~~~~---~~~~~~G~~dv--tiva~G~~v~~a~~aa~~L~~~g-i~~~Vi~~~~i~ 552 (630)
.+. +. .+. ...+..++|+..+ ++ + | +|| |||++|.+ ..++++++ +++| ++++|||+++|+
T Consensus 958 L~R~~~~~~~~~~~~~~~f~~~ig~~~~~~~l~--~-g-~dv~r~iv~~G~~-~~~l~aa~--~~~g~i~v~VIdl~~l~ 1030 (1113)
T 2xt6_A 958 MLRNKAAVSDIRDFTESKFRSVLEEPMYTDGEG--D-R-NKVTRLLLTSGKI-YYELAARK--AKENREDVAIVRIEQLA 1030 (1113)
T ss_dssp GGSCSSSCBCHHHHHSCCCCSEECCHHHHTSCC--C-S-TTCCEEEEECSTH-HHHHHHHH--HHHTCTTEEEEEESEEE
T ss_pred HhCCCCCCCcccccCCCCccccCCcceeecccc--C-c-cccCEEEEEECHH-HHHHHHHH--HhCCCCCEEEEEeeeec
Confidence 330 10 110 0112225677654 33 3 7 899 99999998 77887776 5678 999999999999
Q ss_pred ccCcccHHHHhccCCCCC--eeEEEEecCCcccc-c--------cc---ccCcceEEEe-ccCCC-CCCH
Q 006816 553 LFDRQPAEYKEKVLPSRV--VKRVSVEAGSSVGW-R--------EY---VGVEGKVIGV-EEFGA-SGAY 606 (630)
Q Consensus 553 pld~~~~~~~~~v~~~~~--~~~v~vEe~~~~g~-~--------~~---~~~~~~~~g~-d~f~~-~g~~ 606 (630)
|||.+++. +++.+++. .+ |++||+...|+ + +. ++.+++++|. |.+.+ +|..
T Consensus 1031 Pld~~~i~--~~~~k~~~~~~v-v~veE~~~~gG~gs~v~~~l~e~~~~l~~~~~~vg~~d~~~p~~g~~ 1097 (1113)
T 2xt6_A 1031 PLPRRRLA--ETLDRYPNVKEK-FWVQEEPANQGAWPSFGLTLPEILPDHFTGLKRISRRAMSAPSSGSS 1097 (1113)
T ss_dssp SCCHHHHH--HHHTTCTTCCEE-EEEEEEETTSTTHHHHHHHHHHHSHHHHTTCEEEEECCCSSSSCSCH
T ss_pred CCCHHHHH--HHHHhCCCCceE-EEEecCCCCCCcHHHHHHHHHHHhhhcCCCeEEEccCCcCCCCCCCH
Confidence 99999876 56777663 25 88888877654 2 11 2357889999 88877 4443
No 19
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=100.00 E-value=7.1e-52 Score=436.81 Aligned_cols=292 Identities=12% Similarity=0.050 Sum_probs=247.6
Q ss_pred CCchHHHHHHHHHHHHHHhCCCeEEEecCCCCCcccccccccCcCCCCCC-CCCccccccchHHHHHHHHHHHhcCCCCc
Q 006816 314 PLDATRGYSEKCLNQLAKVLPGLIGGSADLASSNKAYLLGYHDFSQPDSP-WGRNIRYGVREHAMAGISNGVALHGGGLI 392 (630)
Q Consensus 314 ~~~~~r~a~~~~L~~l~~~~~~iv~~~aD~~~s~~~~~~~~~~f~~~~~~-p~R~~~~gIaE~~~vg~a~GlA~~G~~~~ 392 (630)
++.++|++++++|.+++++||+++++++|++ ++++ ++.+..| + ++| |+||||+||+|++|+++|+|+|+.| ++
T Consensus 19 ~~~~~~~a~~~aL~~l~~~~~~vv~~~~D~~-~~gt-~~~~~~~-~-~~~gp~r~~~~gIaE~~~v~~a~G~A~~G--~r 92 (342)
T 2bfd_B 19 QKMNLFQSVTSALDNSLAKDPTAVIFGEDVA-FGGV-FRCTVGL-R-DKYGKDRVFNTPLCEQGIVGFGIGIAVTG--AT 92 (342)
T ss_dssp EEECHHHHHHHHHHHHHHHCTTCEEEETTTT-TTCT-TSTTTTH-H-HHHCTTTEEECCSCHHHHHHHHHHHHHTT--CC
T ss_pred CCccHHHHHHHHHHHHHhcCCCEEEEcCccC-CCcc-cchHHHH-H-HHhCCCeEEEcCcCHHHHHHHHHHHHHCC--Ce
Confidence 4578999999999999999999999999997 3333 4456678 4 688 9999999999999999999999999 99
Q ss_pred eEee-ehHHHHHhhHHHHHH-hcccCC---------CeEEEEecCCCCCCCCCCCCCChhhhHHhhcCCCcEEEecCChH
Q 006816 393 PFAA-TFLIFSDYMKNSIRL-SALSHA---------GVIYILTHDSIGLGEDGPTHQPVEQLAGLRAVPRLLAFRPADGN 461 (630)
Q Consensus 393 pv~~-~~~~F~~~a~dqi~~-~a~~~~---------pv~~v~~~~g~~~g~~G~tHq~~~d~a~l~~iP~l~v~~P~d~~ 461 (630)
||++ +|++|++|++|||++ +|+|+. ||+++++++| +.+|+|||+++|+++||++|||+|++|+|++
T Consensus 93 p~~~~tf~~F~~~a~dqi~~~~a~~~~~~~g~~~~~pvv~~~~~~g---~~~G~th~~~~d~~~l~~iP~l~V~~Psd~~ 169 (342)
T 2bfd_B 93 AIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGC---VGHGALYHSQSPEAFFAHCPGIKVVIPRSPF 169 (342)
T ss_dssp EEEECSSGGGCGGGHHHHHTTGGGHHHHTTTSSCCTTEEEEEEESC---CSSCGGGSSCCCHHHHHTSTTCEEECCSSHH
T ss_pred eEEEecchhHHHHHHHHHHHHHHHHHhhhcCCccCCCEEEEEecCC---CCCCcchhhHhHHHHHhcCCCcEEEeeCCHH
Confidence 9997 799999999999996 575544 9999987765 2589999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCcEEEEEc----CCCcccccCCCcccccccccEEEecCCCCCCCcEEEEEeCchHHHHHHHHHHHH
Q 006816 462 ETAGSYRVAIANRDVPSVIALS----RQKIAANLEGTSADEVERGGYIVSDNSSENKPEIILIGTGTELSLCEGTAKTLR 537 (630)
Q Consensus 462 e~~~~l~~a~~~~~~P~~ir~~----r~~~~~~~~~~~~~~~~~G~~~~~~~~~~G~~dvtiva~G~~v~~a~~aa~~L~ 537 (630)
|++.++++|++. ++|++||++ |+.. +.++.. .+.+++|++.+.+ + | .|++||++|++++.|++|++.|+
T Consensus 170 e~~~~l~~a~~~-~~Pv~i~~p~~l~r~~~-~~~~~~-~~~~~~G~~~v~~--~-g-~dv~iia~G~~~~~a~~Aa~~L~ 242 (342)
T 2bfd_B 170 QAKGLLLSCIED-KNPCIFFEPKILYRAAA-EEVPIE-PYNIPLSQAEVIQ--E-G-SDVTLVAWGTQVHVIREVASMAK 242 (342)
T ss_dssp HHHHHHHHHHHS-SSCEEEEEEGGGTTSCC-EEEESS-CCCCCSSCCEEEE--C-C-SSEEEEECTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-CCcEEEEecchhcCCCC-CCCCCc-ccceeCCceEEec--c-C-CCEEEEEECHHHHHHHHHHHHHH
Confidence 999999999997 999999887 4433 334332 2457789877666 4 7 89999999999999999999999
Q ss_pred hc-CCceEEEEcccccccCcccHHHHhccCCCCCeeEEEEecCCc-ccccc----c--------ccCcceEEEe-ccCCC
Q 006816 538 QE-GRRVRVVSLVCWRLFDRQPAEYKEKVLPSRVVKRVSVEAGSS-VGWRE----Y--------VGVEGKVIGV-EEFGA 602 (630)
Q Consensus 538 ~~-gi~~~Vi~~~~i~pld~~~~~~~~~v~~~~~~~~v~vEe~~~-~g~~~----~--------~~~~~~~~g~-d~f~~ 602 (630)
++ ||+++|||++|++|||.+.+. +++.+++ ++ |++||+.. .||++ + +..++.++|+ |.|++
T Consensus 243 ~~~Gi~v~vi~~~~l~P~d~~~i~--~~~~~~~-~v-v~vEe~~~~gg~g~~v~~~l~~~~~~~l~~~v~~vg~~d~~~~ 318 (342)
T 2bfd_B 243 EKLGVSCEVIDLRTIIPWDVDTIC--KSVIKTG-RL-LISHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYDTPFP 318 (342)
T ss_dssp HHHCCCEEEEECCEEESCCHHHHH--HHHHHHS-CE-EEEEEEESTTCHHHHHHHHHHHHHGGGCSSCCEEEEECSSCCC
T ss_pred hhcCCCEEEEeeeecCCCCHHHHH--HHHhcCC-EE-EEEEeCccCCcHHHHHHHHHHhhCccccCCCeEEEecCCCCCh
Confidence 88 999999999999999999765 4555544 55 89999864 45542 1 2246789999 77987
Q ss_pred CCCHHHHHHHcCCChHHHHHHHHHhhh
Q 006816 603 SGAYLDTFKKYGFTIDNVTKVARSLLS 629 (630)
Q Consensus 603 ~g~~~~l~~~~gl~~~~I~~~i~~~l~ 629 (630)
++ |++++|+|+++|+++|+++++
T Consensus 319 ~~----l~~~~gl~~~~I~~~i~~~l~ 341 (342)
T 2bfd_B 319 HI----FEPFYIPDKWKCYDALRKMIN 341 (342)
T ss_dssp ST----THHHHSCCHHHHHHHHHHHHT
T ss_pred HH----HHHHHCcCHHHHHHHHHHHhc
Confidence 75 999999999999999999875
No 20
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=100.00 E-value=3e-51 Score=431.34 Aligned_cols=297 Identities=16% Similarity=0.148 Sum_probs=249.2
Q ss_pred CCCCchHHHHHHHHHHHHHHhCCCeEEEecCCCCCcccccccccCcCCCCCC-CCCccccccchHHHHHHHHHHHhcCCC
Q 006816 312 SDPLDATRGYSEKCLNQLAKVLPGLIGGSADLASSNKAYLLGYHDFSQPDSP-WGRNIRYGVREHAMAGISNGVALHGGG 390 (630)
Q Consensus 312 ~~~~~~~r~a~~~~L~~l~~~~~~iv~~~aD~~~s~~~~~~~~~~f~~~~~~-p~R~~~~gIaE~~~vg~a~GlA~~G~~ 390 (630)
++++.++|++++++|.+++++||+|+++++|++.+++. +..++.| + ++| |+||||+||+|++|+++|+|+|+.|
T Consensus 11 ~~~~~~~~~a~~~~L~~l~~~~~~vv~~~~D~~~~g~~-~~~~~~~-~-~~~gp~r~~d~gIaE~~~v~~a~G~A~~G-- 85 (341)
T 2ozl_B 11 GSLQVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGA-YKVSRGL-W-KKYGDKRIIDTPISEMGFAGIAVGAAMAG-- 85 (341)
T ss_dssp -CCEEEHHHHHHHHHHHHHHHCTTEEEEETTSSTTCCT-TSTTTTH-H-HHHCTTTEEECCSCHHHHHHHHHHHHHTT--
T ss_pred CcccccHHHHHHHHHHHHHhhCCCEEEECCcccccCCc-chhHHHH-H-HHhCCCcEEECchhHHHHHHHHHHHHHCC--
Confidence 45678999999999999999999999999999853321 2224567 4 588 9999999999999999999999999
Q ss_pred CceEee-ehHHHHHhhHHHHHHh-c--------ccCCCeEEEEecCCCCCCCCCCCC-CChhhhHHhhcCCCcEEEecCC
Q 006816 391 LIPFAA-TFLIFSDYMKNSIRLS-A--------LSHAGVIYILTHDSIGLGEDGPTH-QPVEQLAGLRAVPRLLAFRPAD 459 (630)
Q Consensus 391 ~~pv~~-~~~~F~~~a~dqi~~~-a--------~~~~pv~~v~~~~g~~~g~~G~tH-q~~~d~a~l~~iP~l~v~~P~d 459 (630)
++||++ +|++|++|++|||++. | ++++||++++++ | .+|++|+|| |++ | ++|+++|||+|++|+|
T Consensus 86 ~rp~~~~~f~~F~~~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~~-G-~~g~~G~tHs~~~-e-a~l~~iP~l~V~~Psd 161 (341)
T 2ozl_B 86 LRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPN-G-ASAGVAAQHSQCF-A-AWYGHCPGLKVVSPWN 161 (341)
T ss_dssp CEEEEECSSGGGGGGGHHHHHTTTTTHHHHTTSSCCCCCEEEEEC-S-CCSSCCGGGCCCC-H-HHHHTSTTCEEECCCS
T ss_pred CEEEEEeccHHHHHHHHHHHHHHHHHHHhhccccCCCCEEEEEcC-c-CCCCCCcchhhHH-H-HHhccCCCCEEEEeCC
Confidence 999998 6999999999999985 5 389999999986 5 578899999 555 4 9999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCcEEEEEcCCCcc---c---ccCCCcccccccccEEEecCCCCCCCcEEEEEeCchHHHHHHHH
Q 006816 460 GNETAGSYRVAIANRDVPSVIALSRQKIA---A---NLEGTSADEVERGGYIVSDNSSENKPEIILIGTGTELSLCEGTA 533 (630)
Q Consensus 460 ~~e~~~~l~~a~~~~~~P~~ir~~r~~~~---~---~~~~~~~~~~~~G~~~~~~~~~~G~~dvtiva~G~~v~~a~~aa 533 (630)
++|++.+|++|++. ++|++||++|+... + .+++ ..+.+++|++.+.+ + | .|++||++|+++..|++|+
T Consensus 162 ~~e~~~~l~~a~~~-~~Pv~i~~~~~~~~~~~~v~p~~~~-~~~~~~~Gk~~v~~--~-g-~dv~iia~Gs~~~~a~~Aa 235 (341)
T 2ozl_B 162 SEDAKGLIKSAIRD-NNPVVVLENELMYGVPFEFPPEAQS-KDFLIPIGKAKIER--Q-G-THITVVSHSRPVGHCLEAA 235 (341)
T ss_dssp HHHHHHHHHHHHHS-SSCEEEEECHHHHTCEEECCHHHHS-TTCCCCTTCCEEEE--C-C-SSEEEEECSTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-CCCEEEEEChhhhcCCCCcCCccCC-ccccccCCceEEec--c-C-CCEEEEEeCHHHHHHHHHH
Confidence 99999999999997 89999999976310 1 1122 23457889877666 4 7 8999999999999999999
Q ss_pred HHHHhcCCceEEEEcccccccCcccHHHHhccCCCCCeeEEEEecCCc-ccccc----c---------ccCcceEEEe-c
Q 006816 534 KTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLPSRVVKRVSVEAGSS-VGWRE----Y---------VGVEGKVIGV-E 598 (630)
Q Consensus 534 ~~L~~~gi~~~Vi~~~~i~pld~~~~~~~~~v~~~~~~~~v~vEe~~~-~g~~~----~---------~~~~~~~~g~-d 598 (630)
+.|+++|++++|||+++++|||.+.+. +.+.+.+ ++ |++|++.. .||+. + +..+++++|+ |
T Consensus 236 ~~L~~~Gi~v~vv~~~~l~P~d~~~i~--~~~~~~~-~v-v~vEe~~~~Gg~g~~v~~~l~~~~~~~~l~~~v~~ig~~d 311 (341)
T 2ozl_B 236 AVLSKEGVECEVINMRTIRPMDMETIE--ASVMKTN-HL-VTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGAD 311 (341)
T ss_dssp HHHHTTTCCEEEEECCEEETCCHHHHH--HHHHHHS-CE-EEECSSCSTTCHHHHHHHHHHHSTTGGGCSSCCEEECCCS
T ss_pred HHHHhcCCCeEEEeeeeecCCCHHHHH--HHHhcCC-eE-EEEecCcccCcHHHHHHHHHHhhhcccccCCCEEEEecCC
Confidence 999999999999999999999999765 3444443 45 89999986 45532 1 1346789999 9
Q ss_pred cCCCCCCHHHHHHHcCCChHHHHHHHHHhhh
Q 006816 599 EFGASGAYLDTFKKYGFTIDNVTKVARSLLS 629 (630)
Q Consensus 599 ~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l~ 629 (630)
.|+++|+ +|++++|+|+++|+++|+++++
T Consensus 312 ~~~~~g~--~l~~~~g~~~~~I~~~i~~~l~ 340 (341)
T 2ozl_B 312 VPMPYAK--ILEDNSIPQVKDIIFAIKKTLN 340 (341)
T ss_dssp SCCCSSH--HHHHTTSCCHHHHHHHHHHHHT
T ss_pred cCCCCcH--HHHHHhCcCHHHHHHHHHHHhc
Confidence 9999986 7999999999999999999875
No 21
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=100.00 E-value=5.5e-51 Score=427.67 Aligned_cols=293 Identities=15% Similarity=0.117 Sum_probs=247.1
Q ss_pred chHHHHHHHHHHHHHHhCCCeEEEecCCCCCcccccccccCcCCCCCC-CCCccccccchHHHHHHHHHHHhcCCCCceE
Q 006816 316 DATRGYSEKCLNQLAKVLPGLIGGSADLASSNKAYLLGYHDFSQPDSP-WGRNIRYGVREHAMAGISNGVALHGGGLIPF 394 (630)
Q Consensus 316 ~~~r~a~~~~L~~l~~~~~~iv~~~aD~~~s~~~~~~~~~~f~~~~~~-p~R~~~~gIaE~~~vg~a~GlA~~G~~~~pv 394 (630)
.++|++++++|.+++++||+++++++|++.++++ ++.++.| + ++| |+||||+||+|++|+++|+|+|+.| ++||
T Consensus 3 ~~~~~a~~~~L~~l~~~~~~vv~~~~d~~~~~g~-~~~~~~~-~-~~~gp~r~~~~gIaE~~~v~~a~G~A~~G--~rp~ 77 (324)
T 1w85_B 3 MTMVQAITDALRIELKNDPNVLIFGEDVGVNGGV-FRATEGL-Q-AEFGEDRVFDTPLAESGIGGLAIGLALQG--FRPV 77 (324)
T ss_dssp ECHHHHHHHHHHHHHHHCTTEEEEETTCSTTCCT-TSTTTTH-H-HHHCTTTEEECCSCHHHHHHHHHHHHHTT--CEEE
T ss_pred chHHHHHHHHHHHHHhHCcCEEEEcCcccccCCc-chhHHHH-H-HHhCCCcEEEcchhHHHHHHHHHHHHhCC--CEEE
Confidence 5789999999999999999999999999876554 3445678 4 689 9999999999999999999999999 9999
Q ss_pred ee-ehHHHHHhhHHHHHH-hcc--------cCCCeEEEEecCCCCCCCCCCCCCChhhhHHhhcCCCcEEEecCChHHHH
Q 006816 395 AA-TFLIFSDYMKNSIRL-SAL--------SHAGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAVPRLLAFRPADGNETA 464 (630)
Q Consensus 395 ~~-~~~~F~~~a~dqi~~-~a~--------~~~pv~~v~~~~g~~~g~~G~tHq~~~d~a~l~~iP~l~v~~P~d~~e~~ 464 (630)
++ +|++|++|++|||++ +|+ +++|++++.. +.+.|.+|+||+. +|+++++++|||+|++|+|++|++
T Consensus 78 ~~~t~~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~--~g~~~~~g~~hs~-~~~a~~~~iP~l~V~~Psd~~e~~ 154 (324)
T 1w85_B 78 PEIQFFGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSP--FGGGVHTPELHSD-SLEGLVAQQPGLKVVIPSTPYDAK 154 (324)
T ss_dssp EBCSSGGGGGGTHHHHHTTGGGHHHHTTTSSCCCCEEEEE--ECSSSCCCTTSSC-CCHHHHTTSTTCEEECCSSHHHHH
T ss_pred EEecchhHHHHHHHHHHHHHHHHhhhccCCCcCCEEEEEe--ccCCCCCCCcccc-cHHHHHccCCCCEEEeeCCHHHHH
Confidence 98 799999999999997 576 7999999863 3335666766665 888999999999999999999999
Q ss_pred HHHHHHHHcCCCcEEEEEcCCCcc---cccCCCcccccccccEEEecCCCCCCCcEEEEEeCchHHHHHHHHHHHHhcCC
Q 006816 465 GSYRVAIANRDVPSVIALSRQKIA---ANLEGTSADEVERGGYIVSDNSSENKPEIILIGTGTELSLCEGTAKTLRQEGR 541 (630)
Q Consensus 465 ~~l~~a~~~~~~P~~ir~~r~~~~---~~~~~~~~~~~~~G~~~~~~~~~~G~~dvtiva~G~~v~~a~~aa~~L~~~gi 541 (630)
.++++|++. ++|++||++|.... +.++. ..+.+++|++.+.+ + | .|++||++|++++.|++|++.|+++||
T Consensus 155 ~~l~~a~~~-~~Pv~i~~p~~l~r~~~~~~~~-~~~~~~~Gk~~~~~--~-g-~dv~iva~G~~~~~a~~Aa~~L~~~Gi 228 (324)
T 1w85_B 155 GLLISAIRD-NDPVIFLEHLKLYRSFRQEVPE-GEYTIPIGKADIKR--E-G-KDITIIAYGAMVHESLKAAAELEKEGI 228 (324)
T ss_dssp HHHHHHHHS-SSCEEEEEETTTSSSCCEECCS-SCCCCCTTCCEEEE--C-C-SSEEEEECTTHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHc-CCCEEEEechHhcCCCCCCCCC-ccccccCCceEEEe--c-C-CCEEEEEecHHHHHHHHHHHHHHhcCC
Confidence 999999996 89999998875430 22332 22347789877766 4 7 899999999999999999999999999
Q ss_pred ceEEEEcccccccCcccHHHHhccCCCCCeeEEEEecCCc-ccccc----c--------ccCcceEEEe-ccCCCCCCHH
Q 006816 542 RVRVVSLVCWRLFDRQPAEYKEKVLPSRVVKRVSVEAGSS-VGWRE----Y--------VGVEGKVIGV-EEFGASGAYL 607 (630)
Q Consensus 542 ~~~Vi~~~~i~pld~~~~~~~~~v~~~~~~~~v~vEe~~~-~g~~~----~--------~~~~~~~~g~-d~f~~~g~~~ 607 (630)
+++|||+++++|||.+.+. +++.+++ ++ |++||+.. .||+. + ++.++.++|+ |.|+++|+
T Consensus 229 ~v~vi~~~~l~P~d~~~i~--~~~~~~~-~v-vvvEe~~~~Gg~g~~v~~~l~~~~~~~l~~~v~~vg~~d~~~~~~~-- 302 (324)
T 1w85_B 229 SAEVVDLRTVQPLDIETII--GSVEKTG-RA-IVVQEAQRQAGIAANVVAEINERAILSLEAPVLRVAAPDTVYPFAQ-- 302 (324)
T ss_dssp CEEEEECSEEESCCHHHHH--HHHHHHS-CE-EEEEEEETTSSSHHHHHHHHHHHHGGGCSSCCEEEEECSSSSCCGG--
T ss_pred CEEEEEeeeecCCCHHHHH--HHHhhCC-cE-EEEeCCCcCChHHHHHHHHHHhhCccccCCCeEEEecCCcCCCcHH--
Confidence 9999999999999999765 4455544 55 88899975 45542 1 2356789999 99999987
Q ss_pred HHHHHcCCChHHHHHHHHHhhh
Q 006816 608 DTFKKYGFTIDNVTKVARSLLS 629 (630)
Q Consensus 608 ~l~~~~gl~~~~I~~~i~~~l~ 629 (630)
|++++|||+++|+++|+++++
T Consensus 303 -l~~~~gl~~~~I~~~i~~~l~ 323 (324)
T 1w85_B 303 -AESVWLPNFKDVIETAKKVMN 323 (324)
T ss_dssp -GHHHHSCCHHHHHHHHHHHHT
T ss_pred -HHHHhCcCHHHHHHHHHHHhh
Confidence 999999999999999999875
No 22
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=100.00 E-value=1.7e-50 Score=424.06 Aligned_cols=293 Identities=16% Similarity=0.126 Sum_probs=246.5
Q ss_pred CchHHHHHHHHHHHHHHhCCCeEEEecCCCCCcccccccccCcCCCCCC-CCCccccccchHHHHHHHHHHHhcCCCCce
Q 006816 315 LDATRGYSEKCLNQLAKVLPGLIGGSADLASSNKAYLLGYHDFSQPDSP-WGRNIRYGVREHAMAGISNGVALHGGGLIP 393 (630)
Q Consensus 315 ~~~~r~a~~~~L~~l~~~~~~iv~~~aD~~~s~~~~~~~~~~f~~~~~~-p~R~~~~gIaE~~~vg~a~GlA~~G~~~~p 393 (630)
+.++|++++++|.+++++||+|+++++|++.++++ ++.+..| + ++| |+||||+||+|++|+++|+|+|+.| ++|
T Consensus 3 ~~~~~~a~~~~l~~l~~~~~~vv~~~~D~~~~~g~-~~~~~~~-~-~~~gp~r~~~~gIaE~~~v~~a~G~A~~G--~~p 77 (324)
T 1umd_B 3 LMTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGV-FLVTEGL-L-QKYGPDRVMDTPLSEAAIVGAALGMAAHG--LRP 77 (324)
T ss_dssp EECHHHHHHHHHHHHHHHCTTEEEEETTCSTTCCT-TSTTTTH-H-HHHCTTTEEECCSCHHHHHHHHHHHHHHT--CEE
T ss_pred CCcHHHHHHHHHHHHHhcCCCEEEECCcccccCCc-chhhHHH-H-HHhCCCcEEECchhHHHHHHHHHHHHHCC--CEE
Confidence 45789999999999999999999999999876554 3445678 4 689 9999999999999999999999999 999
Q ss_pred Eee-ehHHHHHhhHHHHHH-hcc--------cCCCeEEEEecCCCCCCCCCCCCCChhhhHHhhcCCCcEEEecCChHHH
Q 006816 394 FAA-TFLIFSDYMKNSIRL-SAL--------SHAGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAVPRLLAFRPADGNET 463 (630)
Q Consensus 394 v~~-~~~~F~~~a~dqi~~-~a~--------~~~pv~~v~~~~g~~~g~~G~tHq~~~d~a~l~~iP~l~v~~P~d~~e~ 463 (630)
|++ +|++|++|++|||++ +|+ +++|++++..+ | +.+.+|++||. +|+++||++|||+|++|+|++|+
T Consensus 78 ~~~~t~~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~~-g-~~~~~g~~hs~-~~~a~~~~iP~~~V~~P~d~~e~ 154 (324)
T 1umd_B 78 VAEIQFADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMPS-G-GGVRGGHHHSQ-SPEAHFVHTAGLKVVAVSTPYDA 154 (324)
T ss_dssp EEECSSGGGCGGGHHHHHHTTTTHHHHTTTSSCCCCEEEEEE-C-SSSSCGGGSSC-CCHHHHHTSTTCEEEECCSHHHH
T ss_pred EEEeccHhHHHHHHHHHHHHHHHHHhhcCCCCcCCEEEEEcC-C-CCCCCCCccch-hHHHHHhcCCCCEEEEeCCHHHH
Confidence 998 799999999999998 475 79999998752 2 34556776665 89999999999999999999999
Q ss_pred HHHHHHHHHcCCCcEEEEEcCCCcc---cccCCCcccccccccEEEecCCCCCCCcEEEEEeCchHHHHHHHHHHHHhcC
Q 006816 464 AGSYRVAIANRDVPSVIALSRQKIA---ANLEGTSADEVERGGYIVSDNSSENKPEIILIGTGTELSLCEGTAKTLRQEG 540 (630)
Q Consensus 464 ~~~l~~a~~~~~~P~~ir~~r~~~~---~~~~~~~~~~~~~G~~~~~~~~~~G~~dvtiva~G~~v~~a~~aa~~L~~~g 540 (630)
+.+++++++. ++|++||++|.... +.+++. .+.+++|++.+.+ + | .|++||++|++++.|++|++.|+++|
T Consensus 155 ~~~l~~a~~~-~~Pv~i~~p~~l~~~~~~~~~~~-~~~~~~Gk~~~~~--~-g-~dv~iva~G~~~~~a~~Aa~~L~~~G 228 (324)
T 1umd_B 155 KGLLKAAIRD-EDPVVFLEPKRLYRSVKEEVPEE-DYTLPIGKAALRR--E-G-KDLTLICYGTVMPEVLQAAAELAKAG 228 (324)
T ss_dssp HHHHHHHHHC-SSCEEEEEEGGGSSSCCEECCSS-CCCCCTTCCEEEE--C-C-SSEEEEECGGGHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhc-CCCEEEEechHhcCCCCCCcCCC-CccccCCcceEEe--c-C-CCEEEEEecHHHHHHHHHHHHHHhcC
Confidence 9999999996 89999988765320 233332 2347889877666 4 7 89999999999999999999999999
Q ss_pred CceEEEEcccccccCcccHHHHhccCCCCCeeEEEEecCCcc-cccc----c--------ccCcceEEEe-ccCCCCCCH
Q 006816 541 RRVRVVSLVCWRLFDRQPAEYKEKVLPSRVVKRVSVEAGSSV-GWRE----Y--------VGVEGKVIGV-EEFGASGAY 606 (630)
Q Consensus 541 i~~~Vi~~~~i~pld~~~~~~~~~v~~~~~~~~v~vEe~~~~-g~~~----~--------~~~~~~~~g~-d~f~~~g~~ 606 (630)
|+++|||++|++|||.+.+. +++.+++ ++ |++||+... ||+. + +..++.++|+ |.|+++|
T Consensus 229 i~v~vi~~~~l~P~d~~~i~--~~~~~~~-~v-v~vEe~~~~gG~g~~v~~~l~~~~~~~l~~~v~~vg~~d~~~~~~-- 302 (324)
T 1umd_B 229 VSAEVLDLRTLMPWDYEAVM--NSVAKTG-RV-VLVSDAPRHASFVSEVAATIAEDLLDMLLAPPIRVTGFDTPYPYA-- 302 (324)
T ss_dssp CCEEEEECCEEETCCHHHHH--HHHHHHS-CE-EEEEEEESTTCHHHHHHHHHHHHHGGGCSSCCEEEEECSSCCCST--
T ss_pred CCEEEEEeceecCCCHHHHH--HHHhcCC-eE-EEEecCCcCCCHHHHHHHHHHHhCccccCCCeEEEeCCCCCCCHH--
Confidence 99999999999999999764 4555554 56 899999754 4432 1 2356789999 9999988
Q ss_pred HHHHHHcCCChHHHHHHHHHhhh
Q 006816 607 LDTFKKYGFTIDNVTKVARSLLS 629 (630)
Q Consensus 607 ~~l~~~~gl~~~~I~~~i~~~l~ 629 (630)
|++++|+|+++|+++|+++++
T Consensus 303 --l~~~~g~~~~~I~~~i~~~l~ 323 (324)
T 1umd_B 303 --QDKLYLPTVTRILNAAKRALD 323 (324)
T ss_dssp --THHHHSCCHHHHHHHHHHHHH
T ss_pred --HHHHhCcCHHHHHHHHHHHhh
Confidence 999999999999999999875
No 23
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=100.00 E-value=6e-50 Score=422.40 Aligned_cols=289 Identities=13% Similarity=0.091 Sum_probs=244.6
Q ss_pred CchHHHHHHHHHHHHHHhCCCeEEEecCCCCCcccccccccCcCCCCCC-CCCccccccchHHHHHHHHHHHhcCCCCce
Q 006816 315 LDATRGYSEKCLNQLAKVLPGLIGGSADLASSNKAYLLGYHDFSQPDSP-WGRNIRYGVREHAMAGISNGVALHGGGLIP 393 (630)
Q Consensus 315 ~~~~r~a~~~~L~~l~~~~~~iv~~~aD~~~s~~~~~~~~~~f~~~~~~-p~R~~~~gIaE~~~vg~a~GlA~~G~~~~p 393 (630)
+.++|++++++|.+++++||+++++++|++.++++ ++.++.| + ++| |+||||+||+|++|+++|+|+|+.| ++|
T Consensus 4 ~~~~~~a~~~~l~~l~~~~~~vv~~~~D~~~~~g~-~~~~~~~-~-~~~gp~r~~~~gisE~~~~~~a~G~A~~G--~rp 78 (338)
T 1qs0_B 4 TMTMIQALRSAMDVMLERDDNVVVYGQDVGYFGGV-FRCTEGL-Q-TKYGKSRVFDAPISESGIVGTAVGMGAYG--LRP 78 (338)
T ss_dssp ECCHHHHHHHHHHHHHHHCTTEEEEETTCSSSCCT-TSTTTTH-H-HHHCTTTEEECCSCHHHHHHHHHHHHHHT--CEE
T ss_pred cchHHHHHHHHHHHHHhhCCCEEEECCcccccCCc-chhHHHH-H-HHhCCCcEEEccccHHHHHHHHHHHHhCC--CEE
Confidence 35789999999999999999999999999876654 3456678 4 688 9999999999999999999999999 999
Q ss_pred Eee-ehHHHHHhhHHHHHH-hcccC--------CCeEEEEecCCCCCCCCCCCCCChhhhHHhhcCCCcEEEecCChHHH
Q 006816 394 FAA-TFLIFSDYMKNSIRL-SALSH--------AGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAVPRLLAFRPADGNET 463 (630)
Q Consensus 394 v~~-~~~~F~~~a~dqi~~-~a~~~--------~pv~~v~~~~g~~~g~~G~tHq~~~d~a~l~~iP~l~v~~P~d~~e~ 463 (630)
|++ +|++|++|++|||++ +|+++ +||+++++++| +.||+|||+++|+++||++|||+|++|+|++|+
T Consensus 79 ~~~~t~~~F~~~a~dqi~~~~a~~~~~~~~~~~~pvv~~~~~~g---~~~G~th~s~~d~~~l~~iP~l~V~~Psd~~e~ 155 (338)
T 1qs0_B 79 VVEIQFADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPCGG---GIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDA 155 (338)
T ss_dssp EEECSCGGGCGGGHHHHHTTTTTHHHHTTTSSCCCCEEEEEECC---SSSCCSSSSCCCHHHHTTSTTCEEECCCSHHHH
T ss_pred EEEeccHhHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEEeCCC---CCCCcccccccHHHHHhcCCCCEEEeeCCHHHH
Confidence 997 799999999999986 57544 99999987765 568999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCcEEEEEc----CCCccc----------------ccCCCcccccccccEEEecCCCCCCCcEEEEEeC
Q 006816 464 AGSYRVAIANRDVPSVIALS----RQKIAA----------------NLEGTSADEVERGGYIVSDNSSENKPEIILIGTG 523 (630)
Q Consensus 464 ~~~l~~a~~~~~~P~~ir~~----r~~~~~----------------~~~~~~~~~~~~G~~~~~~~~~~G~~dvtiva~G 523 (630)
+.++++|++. ++|++||++ |+.. + .++.. .+.+++|++.+.+ + | .|++|||+|
T Consensus 156 ~~~l~~A~~~-~~Pv~i~~p~~l~r~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~gk~~~~~--~-g-~dv~iva~G 228 (338)
T 1qs0_B 156 KGLLIASIEC-DDPVIFLEPKRLYNGPF-DGHHDRPVTPWSKHPHSAVPDG-YYTVPLDKAAITR--P-G-NDVSVLTYG 228 (338)
T ss_dssp HHHHHHHHHS-SSCEEEEEEGGGSSSCC-CSCSSSCCCCSTTSTTCEEESS-CCCCCTTCCCEEE--C-C-SSCEEEECT
T ss_pred HHHHHHHHhc-CCcEEEEEchHhhcCcc-cccccCccchhhcccccccCCC-CcccccCceeEec--C-C-CCEEEEEeC
Confidence 9999999998 899999777 5544 4 23322 2346788766555 4 7 899999999
Q ss_pred chHHHHHHHHHHHHhcCCceEEEEcccccccCcccHHHHhccCCCCCeeEEEEecCCcc-cccc----c--------ccC
Q 006816 524 TELSLCEGTAKTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLPSRVVKRVSVEAGSSV-GWRE----Y--------VGV 590 (630)
Q Consensus 524 ~~v~~a~~aa~~L~~~gi~~~Vi~~~~i~pld~~~~~~~~~v~~~~~~~~v~vEe~~~~-g~~~----~--------~~~ 590 (630)
++++.|++|++. +|++++|||++|++|||.+.+. +++.+++ ++ |++||+... ||++ + +..
T Consensus 229 ~~~~~a~~Aa~~---~Gi~v~vi~~~~l~P~d~~~i~--~~~~~~~-~v-vvvEe~~~~gG~g~~V~~~l~~~~~~~l~~ 301 (338)
T 1qs0_B 229 TTVYVAQVAAEE---SGVDAEVIDLRSLWPLDLDTIV--ESVKKTG-RC-VVVHEATRTCGFGAELVSLVQEHCFHHLEA 301 (338)
T ss_dssp THHHHHHHHHHH---HCCCCEEEECSEEESCCHHHHH--HHHHHHS-CE-EEEESSCSTTSTHHHHHHHHHHHSSSSCCS
T ss_pred HHHHHHHHHHHH---cCCCEEEEeecccCCCCHHHHH--HHHhcCC-EE-EEEecCCcCCcHHHHHHHHHHHhcccccCC
Confidence 999999999987 6999999999999999999765 4555544 55 999999754 5532 1 124
Q ss_pred cceEEEe-ccCCCCCCHHHHHHHcCCChHHHHHHHHHhhh
Q 006816 591 EGKVIGV-EEFGASGAYLDTFKKYGFTIDNVTKVARSLLS 629 (630)
Q Consensus 591 ~~~~~g~-d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l~ 629 (630)
++.++|+ |.|.+++ |++++|+|+++|+++|+++++
T Consensus 302 ~v~~ig~~d~~~~~~----l~~~~g~~~~~I~~~i~~~l~ 337 (338)
T 1qs0_B 302 PIERVTGWDTPYPHA----QEWAYFPGPSRVGAALKKVME 337 (338)
T ss_dssp CCEEEECCSSCCCST----THHHHSCCHHHHHHHHHHSSC
T ss_pred CeEEEecCCcCCcHH----HHHHHCCCHHHHHHHHHHHhc
Confidence 6789999 8888876 999999999999999998764
No 24
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Probab=100.00 E-value=2.1e-50 Score=428.65 Aligned_cols=291 Identities=17% Similarity=0.150 Sum_probs=217.2
Q ss_pred CchHHHHHHHHHHHHHHhCCCeEEEecCCCCCcccccccccCcCCCCCC-CCCccccccchHHHHHHHHHHHhcCCCCce
Q 006816 315 LDATRGYSEKCLNQLAKVLPGLIGGSADLASSNKAYLLGYHDFSQPDSP-WGRNIRYGVREHAMAGISNGVALHGGGLIP 393 (630)
Q Consensus 315 ~~~~r~a~~~~L~~l~~~~~~iv~~~aD~~~s~~~~~~~~~~f~~~~~~-p~R~~~~gIaE~~~vg~a~GlA~~G~~~~p 393 (630)
+.++|++++++|.+++++||+|+++++|++.++++ +..+..| + ++| |+||||+||+|++|+++|+|||+.| ++|
T Consensus 50 ~~~~~~a~~~aL~~l~~~d~~vv~~~~D~~~~~g~-~~~~~~~-~-~~~gp~r~~d~gIaE~~~v~~a~G~A~~G--~rp 124 (369)
T 1ik6_A 50 MANMAKAINMALHEEMERDERVVVLGEDVGKKGGV-FLVTEGL-Y-ERFGPERVIDTPLNEGGILGFAMGMAMAG--LKP 124 (369)
T ss_dssp EECHHHHHHHHHHHHHHHCTTEEEEEC----------CTTTTH-H-HHHCTTTEEECCSCHHHHHHHHHHHHHTT--CEE
T ss_pred cccHHHHHHHHHHHHHccCCCEEEECCcccccCCc-chhHHHH-H-HHhCCCcEEECcccHHHHHHHHHHHHHCC--Cee
Confidence 45799999999999999999999999999865543 3345667 4 688 9999999999999999999999999 999
Q ss_pred Eee-ehHHHHHhhHHHHHH-hccc--------CCCeEEEEecCCCCCCCCCCCCCChhhhHHhhcCCCcEEEecCChHHH
Q 006816 394 FAA-TFLIFSDYMKNSIRL-SALS--------HAGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAVPRLLAFRPADGNET 463 (630)
Q Consensus 394 v~~-~~~~F~~~a~dqi~~-~a~~--------~~pv~~v~~~~g~~~g~~G~tHq~~~d~a~l~~iP~l~v~~P~d~~e~ 463 (630)
|++ +|++|++|++|||++ +|++ ++||+++++++| ++| +|+|||+.+ +++||++|||+|++|+|++|+
T Consensus 125 v~~~tf~~Fl~~a~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~gg-~~g-~g~~hs~~~-~a~l~~iPnl~V~~Psd~~e~ 201 (369)
T 1ik6_A 125 VAEIQFVDFIWLGADELLNHIAKLRYRSGGNYKAPLVVRTPVGS-GTR-GGLYHSNSP-EAIFVHTPGLVVVMPSTPYNA 201 (369)
T ss_dssp EEECCCC----CCHHHHHHHHHHHHC------CCCCEEEEEECC-------------H-HHHHHTCTTCEEECCCSHHHH
T ss_pred EEEecchhHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCC-CCC-CCccccccH-HHHHcCCCCcEEEecCCHHHH
Confidence 998 699999999999998 5766 999999998777 345 787777665 699999999999999999999
Q ss_pred HHHHHHHHHcCCCcEEEEEcCCCcc---cccCCCcccccccccEEEecCCCCCCCcEEEEEeCchHHHHHHHHHHHHhcC
Q 006816 464 AGSYRVAIANRDVPSVIALSRQKIA---ANLEGTSADEVERGGYIVSDNSSENKPEIILIGTGTELSLCEGTAKTLRQEG 540 (630)
Q Consensus 464 ~~~l~~a~~~~~~P~~ir~~r~~~~---~~~~~~~~~~~~~G~~~~~~~~~~G~~dvtiva~G~~v~~a~~aa~~L~~~g 540 (630)
+.+|++|++. ++|++||++|.... +.++. ..+.+++|++.+++ + | .|++|||+|++++.|++|++.|+ |
T Consensus 202 ~~ll~~A~~~-~~Pv~i~~p~~l~r~~~~~v~~-~~~~~~~G~~~v~~--~-g-~dv~Iia~G~~v~~a~~Aa~~L~--G 273 (369)
T 1ik6_A 202 KGLLKAAIRG-DDPVVFLEPKILYRAPREEVPE-GDYVVEIGKARVAR--E-G-DDVTLVTYGAVVHKALEAAERVK--A 273 (369)
T ss_dssp HHHHHHHHHS-SSCEEEEEEGGGSSCCCEEEEC-SSCCCCTTCCEEEE--C-C-SSEEEEECTTHHHHHHHHHHTSS--S
T ss_pred HHHHHHHHhC-CCCEEEEEehhhhccCCCCcCC-CcccccCCceEEEE--c-C-CCEEEEEeCHHHHHHHHHHHHhC--C
Confidence 9999999996 89999998875430 22322 22347889877666 4 7 89999999999999999999996 8
Q ss_pred CceEEEEcccccccCcccHHHHhccCCCCCeeEEEEecCCcc-ccc----cc--------ccCcceEEEe-ccCCCCCCH
Q 006816 541 RRVRVVSLVCWRLFDRQPAEYKEKVLPSRVVKRVSVEAGSSV-GWR----EY--------VGVEGKVIGV-EEFGASGAY 606 (630)
Q Consensus 541 i~~~Vi~~~~i~pld~~~~~~~~~v~~~~~~~~v~vEe~~~~-g~~----~~--------~~~~~~~~g~-d~f~~~g~~ 606 (630)
+++|||++|++|||++++. +++.+++ ++ |++||+... ||+ ++ +..++.++|+ |.|+++|+
T Consensus 274 -~v~Vi~~~~l~P~d~~~i~--~~~~~~~-~v-vvvEe~~~~GG~g~~v~~~l~~~~~~~l~~pv~~vg~~d~~~~~~~- 347 (369)
T 1ik6_A 274 -SVEVVDLQTLNPLDFDTVL--KSVSKTG-RL-IIAHDSPKTGGLGAEVRALVAEKALDRLTAPVIRLAGPDVPQSPIA- 347 (369)
T ss_dssp -CEEEEECCEEETTCHHHHH--HHHHHHC-CE-EEEEEEESTTSHHHHHHHHHHHHSGGGCSSCCEEEEECCCC------
T ss_pred -CeEEEeeeecCCCCHHHHH--HHHhccC-eE-EEEecCCcCCcHHHHHHHHHHhhCccccCCCeEEEcCCCcCCCCHH-
Confidence 9999999999999999765 4565555 55 888999764 554 11 2356789999 99999987
Q ss_pred HHHHHHcCCChHHHHHHHHHhhh
Q 006816 607 LDTFKKYGFTIDNVTKVARSLLS 629 (630)
Q Consensus 607 ~~l~~~~gl~~~~I~~~i~~~l~ 629 (630)
|++++|||+++|+++|+++++
T Consensus 348 --l~~~~gl~~~~I~~~i~~~l~ 368 (369)
T 1ik6_A 348 --ADAAYAPTVERIIKAIEYVMR 368 (369)
T ss_dssp ---------CHHHHHHHHHHHHT
T ss_pred --HHHHhCcCHHHHHHHHHHHhh
Confidence 999999999999999999875
No 25
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=99.97 E-value=1.6e-31 Score=284.08 Aligned_cols=231 Identities=16% Similarity=0.093 Sum_probs=192.8
Q ss_pred HHHHHhhcCCCCCCCcccHHHHHHHHHHHhhccCCCCCCCCCCCeEEecCcChhHHHHHHHHHcCCCCCCHHHHhhhhh-
Q 006816 3 IVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQYVCLHLAGFQSVQLEDLKRLCK- 81 (630)
Q Consensus 3 ~~~~~~~~~~GH~g~~ls~~~~~~~L~~~~~~~d~~~~~~~~~Dr~v~s~gH~~~~~y~~~~l~G~~~~~~~~l~~~r~- 81 (630)
..+++...++||+|+++|+...-++++...+.++| +||+||+ +|+. |+++.+.|+ ...+.|.+|++
T Consensus 52 ~~~~~~~~~~G~~g~~~~~~G~ea~~~~~~~~l~~------~rD~i~~--s~r~---~~~~~~~G~--~~~~~l~~~~g~ 118 (367)
T 1umd_A 52 DERYTILIRTGKTSFIAPAAGHEAAQVAIAHAIRP------GFDWVFP--YYRD---HGLALALGI--PLKELLGQMLAT 118 (367)
T ss_dssp HHHHHHHHHTTSCSCCCCCTTCHHHHHHHHHHSCT------TTSEEEC--CTTT---HHHHHHHTC--CHHHHHHHHHTB
T ss_pred HHHHHHHhhCCCccCCCCCcCHHHHHHHHHHHcCC------CCcEEEe--CcHH---HHHHHHcCC--CHHHHHHHHhCC
Confidence 45677777899999999999988888888888987 7899997 5665 999999998 66777888988
Q ss_pred -----cCCCCCCCCCCCCcCcccccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHH
Q 006816 82 -----MGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAA 156 (630)
Q Consensus 82 -----~~s~~~g~p~~~~~~~~~~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal 156 (630)
.|+..++||.. ...++...+|++|+++|.|+|+|+|.|+.+ ++++|||++|||++++|.+||+|
T Consensus 119 ~~g~~~G~~~~~h~~~-~~~~~~~~~g~lG~~l~~a~G~A~a~k~~~----------~~~~vv~i~GDGa~~~G~~~Eal 187 (367)
T 1umd_A 119 KADPNKGRQMPEHPGS-KALNFFTVASPIASHVPPAAGAAISMKLLR----------TGQVAVCTFGDGATSEGDWYAGI 187 (367)
T ss_dssp TTCTTTTCSCSSCCCB-TTTTBCCCCSSTTTTHHHHHHHHHHHHHTT----------CCCCEEEEEETGGGGSHHHHHHH
T ss_pred CCCCCCCCCCCCCCcc-cccCcCCCCchhhhhhhHHHHHHHHHHHhC----------CCCeEEEEEcccccccCcHHHHH
Confidence 45556678852 233566789999999999999999998765 78899999999999999999999
Q ss_pred HHhHHcCCCcEEEEEECCCCccccccccc-ChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHh---cCCCcEEEE
Q 006816 157 ALAAHWKLNKLTLIYDDNHNTIDGPTSLV-LSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAAN---ETKKPTFIR 232 (630)
Q Consensus 157 ~~a~~~~L~~li~i~~~N~~~i~~~~~~~-~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~---~~~~P~~i~ 232 (630)
++|+++++| +++||+||+|+++++.... ...++.+++++|||+++.| ||+ |+.++.+++++|.+ ..++|++|+
T Consensus 188 ~~A~~~~lp-vi~vv~NN~~gi~~~~~~~~~~~d~~~~a~a~G~~~~~V-dg~-d~~av~~a~~~A~~~a~~~~gP~lIe 264 (367)
T 1umd_A 188 NFAAVQGAP-AVFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLV-DGM-DVLASYYVVKEAVERARRGEGPSLVE 264 (367)
T ss_dssp HHHHHTTCS-EEEEEEECSEETTEEHHHHCSSSCSGGGGGGTTSCEEEE-ETT-CHHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred HHHHHhCcC-EEEEEecCCeeeccChhhccCCCCHHHHHHHcCCcEEEe-CCC-CHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999 9999999999998876533 3468899999999999998 999 99999887766532 167999999
Q ss_pred EeecccccCcccCCC--CCCChHHHHHHHHh
Q 006816 233 VKKMRERVNWVDRDQ--FHVIPMVYREMQIQ 261 (630)
Q Consensus 233 ~~t~k~~~g~~~~~~--~~~~~~~~~~~~~~ 261 (630)
+.|+|++ ||+..+. .+.++++++.|++.
T Consensus 265 ~~t~r~~-Ghs~~D~~~~Yr~~~e~~~~~~~ 294 (367)
T 1umd_A 265 LRVYRYG-PHSSADDDSRYRPKEEVAFWRKK 294 (367)
T ss_dssp EECCCCS-CSSTTCCGGGTSCHHHHHHHHTT
T ss_pred EEeecCC-CCCCCCCccccCCHHHHHHHHcC
Confidence 9999998 9976552 46777777777753
No 26
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=99.94 E-value=1.1e-26 Score=246.09 Aligned_cols=213 Identities=15% Similarity=0.089 Sum_probs=157.7
Q ss_pred CCCCCCCcccHHHHHHHHHHHhhccCCCCCCCCCCCeEEecCcChhHHHHHHHHHcCCCCCCHHHH-hhhhhc--CCCCC
Q 006816 11 KAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQYVCLHLAGFQSVQLEDL-KRLCKM--GSRTP 87 (630)
Q Consensus 11 ~~GH~g~~ls~~~~~~~L~~~~~~~d~~~~~~~~~Dr~v~s~gH~~~~~y~~~~l~G~~~~~~~~l-~~~r~~--~s~~~ 87 (630)
.-|+..++.|.--+.+.+-.. +++ .|. |++. |.. +.++...|. +.+.+ ..|... |+..
T Consensus 71 r~g~~~~~~G~Ea~~vg~~~~---l~~-------~D~-v~~~-~R~---~~~~~~~G~---~~~~~~~el~G~~~G~~~- 131 (368)
T 1w85_A 71 RLGFYAPTAGQEASQIASHFA---LEK-------EDF-ILPG-YRD---VPQIIWHGL---PLYQAFLFSRGHFHGNQI- 131 (368)
T ss_dssp SCCSCCCCTTCHHHHHHHHHT---CCT-------TCE-EECC-SSC---HHHHHHTTC---CHHHHHHHHHTCGGGGCC-
T ss_pred ccccCCCCCCHHHHHHHHHHh---cCC-------cCE-EEec-chh---HHHHHhcCC---CHHHHHHHHCCCCCCCCC-
Confidence 346666777766555555543 333 344 4444 665 344444553 33432 222211 2221
Q ss_pred CCCCCCCcCcccccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcE
Q 006816 88 GHPENVVTEGIEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKL 167 (630)
Q Consensus 88 g~p~~~~~~~~~~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~l 167 (630)
|+ ..++...+|+||+++|+|+|+|+|.++++ ++++|||++|||++++|.+||+|++|++++|| +
T Consensus 132 -h~----~~~~~~~~g~lG~~lp~AvG~A~A~~~~~----------~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lp-v 195 (368)
T 1w85_A 132 -PE----GVNVLPPQIIIGAQYIQAAGVALGLKMRG----------KKAVAITYTGDGGTSQGDFYEGINFAGAFKAP-A 195 (368)
T ss_dssp -CT----TCCBCCCCCSTTHHHHHHHHHHHHHHHTT----------CSCCEEEEEETGGGGSHHHHHHHHHHHHTTCC-E
T ss_pred -Cc----ccccCCCccccCccccHHHHHHHHhHhhC----------CCCeEEEEEchhhhhhcHHHHHHHHHHHHCcC-E
Confidence 32 34567788999999999999999998765 78999999999999999999999999999998 9
Q ss_pred EEEEECCCCcccccccccC-hhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHh---cCCCcEEEEEeecccccCcc
Q 006816 168 TLIYDDNHNTIDGPTSLVL-SEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAAN---ETKKPTFIRVKKMRERVNWV 243 (630)
Q Consensus 168 i~i~~~N~~~i~~~~~~~~-~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~---~~~~P~~i~~~t~k~~~g~~ 243 (630)
++||+||+|++++++.... .+++.+++++|||++++| ||+ |++++.+++++|++ ..++|++|++.|+|.+ ||+
T Consensus 196 i~vv~NN~~gi~~~~~~~~~~~d~~~~a~a~G~~~~~V-dG~-D~~av~~a~~~A~~~~r~~~gP~lIe~~t~r~~-gHs 272 (368)
T 1w85_A 196 IFVVQNNRFAISTPVEKQTVAKTLAQKAVAAGIPGIQV-DGM-DPLAVYAAVKAARERAINGEGPTLIETLCFRYG-PHT 272 (368)
T ss_dssp EEEEEECSEETTEEGGGTCSCSCSGGGGGGTTCCEEEE-ETT-CHHHHHHHHHHHHHHHHTTSCCEEEEEECCCSS-CSC
T ss_pred EEEEEcCCccceeccccccCCCCHHHHHHHCCCCEEEE-cCC-CHHHHHHHHHHHHHHHHhcCCCEEEEEEeeccC-CCC
Confidence 9999999999998776443 478999999999999998 999 99999999988753 2579999999999998 997
Q ss_pred -cCC--CCCCChHHHHHHHHh
Q 006816 244 -DRD--QFHVIPMVYREMQIQ 261 (630)
Q Consensus 244 -~~~--~~~~~~~~~~~~~~~ 261 (630)
..+ ..+.|.++++.|++.
T Consensus 273 ~~~Ddp~~yr~~~e~~~~~~~ 293 (368)
T 1w85_A 273 MSGDDPTRYRSKELENEWAKK 293 (368)
T ss_dssp SSCC------CHHHHHHHHTT
T ss_pred CCCCCccccCCHHHHHHHhcC
Confidence 544 267788888888754
No 27
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=99.94 E-value=2.9e-26 Score=245.38 Aligned_cols=195 Identities=20% Similarity=0.191 Sum_probs=143.3
Q ss_pred CCeEEecCcChhHHHHHHHHHcCCCCCCHHHHhhhhhc------CCCCCCCCCCCCcCcccccccccchhHHHHHHHHHH
Q 006816 45 RDRFVLSAGHGCLLQYVCLHLAGFQSVQLEDLKRLCKM------GSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALA 118 (630)
Q Consensus 45 ~Dr~v~s~gH~~~~~y~~~~l~G~~~~~~~~l~~~r~~------~s~~~g~p~~~~~~~~~~~~G~lG~~l~~AvG~A~a 118 (630)
.|. |++ .|... .++...|. ...+.|..|+.. |+..++|+... ..++...+|+||+++|+|+|+|+|
T Consensus 106 ~D~-v~~-~yR~~---~~~~~~G~--~~~~~l~e~~g~~~g~~~G~~~~~H~~~~-~~~~~~~~g~lG~~lp~AvG~AlA 177 (400)
T 2bfd_A 106 TDL-VFG-QAREA---GVLMYRDY--PLELFMAQCYGNISDLGKGRQMPVHYGCK-ERHFVTISSPLATQIPQAVGAAYA 177 (400)
T ss_dssp TSE-EEC-CSCCH---HHHHHTTC--CHHHHHHHHHTCTTCTTTTCSCSSCCCBT-TTTBCCCCSSTTTHHHHHHHHHHH
T ss_pred CCE-EEe-cCcCH---HHHHHcCC--CHHHHHHHhcCCCCCCCCCCCCCcCCccc-ccCccccCccccccccHHHHHHHh
Confidence 454 445 46663 35566786 555556777764 44455676532 234677889999999999999999
Q ss_pred HHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCcccccccccC-hhcHHHHHHhC
Q 006816 119 EAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGPTSLVL-SEDISARFKSL 197 (630)
Q Consensus 119 ~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~~~~~~-~~~~~~~~~a~ 197 (630)
.++++ ++++|||++|||++++|.+||+|++|++++|| +++||+||+|++++++.... .+++.+++++|
T Consensus 178 ~~~~~----------~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lp-vi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~ 246 (400)
T 2bfd_A 178 AKRAN----------ANRVVICYFGEGAASEGDAHAGFNFAATLECP-IIFFCRNNGYAISTPTSEQYRGDGIAARGPGY 246 (400)
T ss_dssp HHHHT----------CCCCEEEEEETTGGGSHHHHHHHHHHHHTTCC-EEEEEEECSEETTEEGGGTCSSSTTGGGTGGG
T ss_pred hhhhC----------CCCeEEEEECchhhhcChHHHHHHHHHHHCcC-EEEEEECCceeeeecccccCCCCCHHHHHHHc
Confidence 98775 68999999999999999999999999999996 99999999999999876544 47899999999
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHh---cCCCcEEEEEeecccccCcccCCC--CCCChHHHHHHHHh
Q 006816 198 GWNTIMVENIHDNLSSFKEALMAAAN---ETKKPTFIRVKKMRERVNWVDRDQ--FHVIPMVYREMQIQ 261 (630)
Q Consensus 198 G~~~~~v~dG~~d~~~l~~al~~a~~---~~~~P~~i~~~t~k~~~g~~~~~~--~~~~~~~~~~~~~~ 261 (630)
||+++.| ||+ |++++.+++++|++ ..++|++|++.|+|.. ||++.++ .|+++++++.|+.+
T Consensus 247 G~~~~~V-dG~-D~~av~~a~~~A~~~ar~~~~P~lIe~~tyR~~-gHs~~D~~~~Yr~~~e~~~~~~~ 312 (400)
T 2bfd_A 247 GIMSIRV-DGN-DVFAVYNATKEARRRAVAENQPFLIEAMTYRIG-HASTSDDSSAFRSVDEVNYWDKQ 312 (400)
T ss_dssp TCEEEEE-ETT-CHHHHHHHHHHHHHHHHHHTCCEEEEEECCCCC---CC-------------------
T ss_pred CCcEEEE-eCC-CHHHHHHHHHHHHHHHHhCCCCEEEEEEeeeeC-CCCCCCCCccCCCHHHHHHHHhc
Confidence 9999998 999 99999999887653 1579999999999987 8876543 46667777777653
No 28
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=99.92 E-value=1.2e-24 Score=232.62 Aligned_cols=151 Identities=19% Similarity=0.164 Sum_probs=130.3
Q ss_pred CcccccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCC
Q 006816 96 EGIEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNH 175 (630)
Q Consensus 96 ~~~~~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~ 175 (630)
.++...+|+||+++|+|+|+|+|.++++ ++++|||++|||++++|.+||+|++|++++|| +++||+||+
T Consensus 174 ~~~~~~~g~lG~~lp~AvGaA~A~k~~~----------~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lp-vi~Vv~NN~ 242 (407)
T 1qs0_A 174 AGFFTISGNLATQFVQAVGWAMASAIKG----------DTKIASAWIGDGATAESDFHTALTFAHVYRAP-VILNVVNNQ 242 (407)
T ss_dssp GTBCCCCSSSSHHHHHHHHHHHHHHHTT----------CCCCEEEEEETGGGGSHHHHHHHHHHHHHTCC-EEEEEEECS
T ss_pred cCccccccccccchhHHHHHHHHHHHhC----------CCCEEEEEECCchhhcChHHHHHHHHHHHCcC-EEEEEECCC
Confidence 3566778999999999999999998765 78999999999999999999999999999999 999999999
Q ss_pred CcccccccccC--hhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHh---cCCCcEEEEEeecccccCcccCCC--C
Q 006816 176 NTIDGPTSLVL--SEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAAN---ETKKPTFIRVKKMRERVNWVDRDQ--F 248 (630)
Q Consensus 176 ~~i~~~~~~~~--~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~---~~~~P~~i~~~t~k~~~g~~~~~~--~ 248 (630)
|++++++.... ..++.+++++|||++++| ||+ |++++.+++++|.+ ..++|++|++.|+|++ ||+..|. .
T Consensus 243 ~gi~~~~~~~~~~~~d~a~~a~a~G~~~~~V-dG~-D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~-Ghs~~Dd~~~ 319 (407)
T 1qs0_A 243 WAISTFQAIAGGESTTFAGRGVGCGIASLRV-DGN-DFVAVYAASRWAAERARRGLGPSLIEWVTYRAG-PHSTSDDPSK 319 (407)
T ss_dssp EETTEEGGGGTTTTCCSTHHHHHTTCEEEEE-ETT-CHHHHHHHHHHHHHHHHTTSCCEEEEEECCCCS-CSSTTCCGGG
T ss_pred cceeeccccccCCCCCHHHHHHHcCCeEEEE-cCC-CHHHHHHHHHHHHHHHHhcCCCEEEEEEeeccC-CcCCCCCccc
Confidence 99998776443 578999999999999998 999 99999988887753 1689999999999999 9976552 4
Q ss_pred CCChHHHHHHHH
Q 006816 249 HVIPMVYREMQI 260 (630)
Q Consensus 249 ~~~~~~~~~~~~ 260 (630)
|+++++++.|++
T Consensus 320 Yr~~~e~~~~~~ 331 (407)
T 1qs0_A 320 YRPADDWSHFPL 331 (407)
T ss_dssp TSCTTHHHHCTT
T ss_pred cCCHHHHHHHhc
Confidence 566666665553
No 29
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=99.92 E-value=6e-24 Score=224.34 Aligned_cols=212 Identities=20% Similarity=0.212 Sum_probs=157.9
Q ss_pred CCCCCcccHHHHHHHHHHHhhccCCCCCCCCCCCeEEecCcChhHHHHHHHHHcCCCCCCHHHHhhhhhcCCCCCCCCC-
Q 006816 13 GHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQYVCLHLAGFQSVQLEDLKRLCKMGSRTPGHPE- 91 (630)
Q Consensus 13 GH~g~~ls~~~~~~~L~~~~~~~d~~~~~~~~~Dr~v~s~gH~~~~~y~~~~l~G~~~~~~~~l~~~r~~~s~~~g~p~- 91 (630)
|+...+.|.--+.+.+-.. +++ .|. |++ +|.. +.+....| .+.+++ |.++.+...|...
T Consensus 64 gf~~~~~GqEa~~vg~~~a---l~~-------~D~-i~~-~yR~---~~~~~~~G---~~~~~i--~~e~~g~~~g~~~g 123 (365)
T 2ozl_A 64 GFCHLCDGQEACCVGLEAG---INP-------TDH-LIT-AYRA---HGFTFTRG---LSVREI--LAELTGRKGGCAKG 123 (365)
T ss_dssp SCCCCCTTCHHHHHHHHHT---SCT-------TSE-EEC-CSCC---HHHHHHTT---CCHHHH--HHHHTTCTTSTTTT
T ss_pred ccccCCCChHHHHHHHHHh---hCC-------CCE-Eeh-HHHH---HHHHHhcC---CCHHHH--HHHHcCCCCCCCCC
Confidence 6666666755544444433 333 464 443 4887 66677777 456665 3333333222111
Q ss_pred ----CC-CcCcccccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCc
Q 006816 92 ----NV-VTEGIEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNK 166 (630)
Q Consensus 92 ----~~-~~~~~~~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~ 166 (630)
.+ ..+++...+|+||+++|+|+|+|+|.++++ ++++|||++|||++++|.+||+|++|+.++||
T Consensus 124 ~gg~~H~~~~~~~~~~g~~G~~lp~A~G~A~A~~~~~----------~~~~vv~~~GDGa~~~G~~~Ealn~A~~~~lp- 192 (365)
T 2ozl_A 124 KGGSMHMYAKNFYGGNGIVGAQVPLGAGIALACKYNG----------KDEVCLTLYGDGAANQGQIFEAYNMAALWKLP- 192 (365)
T ss_dssp SSCTTCCCBTTBCCCCCSTTTHHHHHHHHHHHHHHHT----------CCCCEEEEEETTGGGCHHHHHHHHHHHHTTCC-
T ss_pred CCCCCCcCccccCCCcchhhhhhHHHHHHHHHHHhcC----------CCceEEEEECchhhhccHHHHHHHHHHHHCcC-
Confidence 00 234566677999999999999999998875 68999999999999999999999999999998
Q ss_pred EEEEEECCCCccccccccc-ChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHh---cCCCcEEEEEeecccccCc
Q 006816 167 LTLIYDDNHNTIDGPTSLV-LSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAAN---ETKKPTFIRVKKMRERVNW 242 (630)
Q Consensus 167 li~i~~~N~~~i~~~~~~~-~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~---~~~~P~~i~~~t~k~~~g~ 242 (630)
+++||+||+|+++++.... ...++.+ +++||++++| ||+ |++++.+++++|.+ ..++|++|++.|+|.+ ||
T Consensus 193 vi~vv~NN~~g~~t~~~~~~~~~~~~~--ra~g~p~~~V-dG~-D~~av~~a~~~A~~~~r~~~gP~lIe~~t~R~~-gH 267 (365)
T 2ozl_A 193 CIFICENNRYGMGTSVERAAASTDYYK--RGDFIPGLRV-DGM-DILCVREATRFAAAYCRSGKGPILMELQTYRYH-GH 267 (365)
T ss_dssp EEEEEEECSEETTEEHHHHCSCCCGGG--TTTTSCEEEE-ETT-CHHHHHHHHHHHHHHHHTTCCCEEEEEECCCSS-CS
T ss_pred EEEEEECCCcccCCCcccccCCCCHHH--HhCCCCEEEE-eCC-CHHHHHHHHHHHHHHHHhCCCCEEEEEEeecCC-CC
Confidence 8899999999998865432 2355655 6899999998 999 99999999887642 2689999999999998 99
Q ss_pred ccCCC--CCCChHHHHHHHH
Q 006816 243 VDRDQ--FHVIPMVYREMQI 260 (630)
Q Consensus 243 ~~~~~--~~~~~~~~~~~~~ 260 (630)
+..|+ .|+++++++.|++
T Consensus 268 s~~D~~~~Yr~~~e~~~~~~ 287 (365)
T 2ozl_A 268 EMSDPGVSYRTREEIQEVRS 287 (365)
T ss_dssp STTCCSCSSSCHHHHHHHHH
T ss_pred CCCCCCcccCCHHHHHHHHh
Confidence 87664 3678888888875
No 30
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}
Probab=99.75 E-value=5.4e-19 Score=189.39 Aligned_cols=247 Identities=16% Similarity=0.072 Sum_probs=80.9
Q ss_pred CCCCccccccchHHHHHHHHHHHhcCCCCceEeeehHHHHHhhHHHHHHhcccCCCeEEEEecCCCCCCC--CCCCCCCh
Q 006816 363 PWGRNIRYGVREHAMAGISNGVALHGGGLIPFAATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGE--DGPTHQPV 440 (630)
Q Consensus 363 ~p~R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~~g~--~G~tHq~~ 440 (630)
+..+|+.+. +|+.++++|.|.|+.| .||++++.++++.+++|||.+++..++|++++.. .+.+.+. ...+||+.
T Consensus 63 ~g~~~i~~e-~E~~a~~~a~Gaa~aG--~r~~~~ts~~G~~~~~d~l~~aa~~~~P~Vi~~~-~~~~~~~g~~~~~~~sd 138 (395)
T 1yd7_A 63 VDGVVIQME-DEIASIAAAIGASWAG--AKAMTATSGPGFSLMQENIGYAVMTETPVVIVDV-QRSGPSTGQPTLPAQGD 138 (395)
T ss_dssp GTCEEEECS-CHHHHHHHHHHHHHTT--CCEEEEEETTHHHHHTTTCC----CCCCEEEEEE-C----------------
T ss_pred cCcEEEEeC-CHHHHHHHHHHHHHhC--CcEEEEeCchHHHHHHHHHHHHHhcCCCEEEEEe-eCCCCCCCCCcccchhH
Confidence 457889888 9999999999999999 9999999999999999999888888999999863 3333332 22334433
Q ss_pred hhhHHhhcCC--CcEEEecCChHHHHHHHHHHH----HcCCCcEEEEEcC------CCcc-cc---cC----------CC
Q 006816 441 EQLAGLRAVP--RLLAFRPADGNETAGSYRVAI----ANRDVPSVIALSR------QKIA-AN---LE----------GT 494 (630)
Q Consensus 441 ~d~a~l~~iP--~l~v~~P~d~~e~~~~l~~a~----~~~~~P~~ir~~r------~~~~-~~---~~----------~~ 494 (630)
.-.+.+.+.| ++.+++|++++|+..++..|+ +. +.|++++++. +.+. +. +. +.
T Consensus 139 ~~~~~~~~~g~~g~~vl~p~~~qea~~l~~~A~~lA~~~-~~PVi~~~~~~l~h~~~~v~~~~~~~~~~~~~~~~~~~~~ 217 (395)
T 1yd7_A 139 IMQAIWGTHGDHSLIVLSPSTVQEAFDFTIRAFNLSEKY-RTPVILLTDAEVGHMRERVYIPNPDEIEIINRKLPRNEEE 217 (395)
T ss_dssp ----------CCCCEEECCCSHHHHHHHHHHHHHHHHHH-TSEEEEEECHHHHHCEEEEEECCGGGSCCCCCC-------
T ss_pred HHHHHhccCCCcceEEEeCCCHHHHHHHHHHHHHHHHHH-CCCEEEEcchhHhCeeceecCCChHHhhhhcccccCCCcc
Confidence 2224667766 999999999999999999998 55 6899999863 1110 10 00 00
Q ss_pred --ccccc--ccc--------cE---------------------------------------------EEecCCCCCCCcE
Q 006816 495 --SADEV--ERG--------GY---------------------------------------------IVSDNSSENKPEI 517 (630)
Q Consensus 495 --~~~~~--~~G--------~~---------------------------------------------~~~~~~~~G~~dv 517 (630)
..+.. +.| .+ .... .+| .|+
T Consensus 218 ~~~~~~~~~~~~~~~~~~pg~~~~~~~~~~~h~e~g~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~--~~g-~dv 294 (395)
T 1yd7_A 218 AKLPFGDPHGDGVPPMPIFGKGYRTYVTGLTHDEKGRPRTVDREVHERLIKRIVEKIEKNKKDIFTYETYE--LED-AEI 294 (395)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCcccCCCCCCCCCccCCCCceeEecccccccccCcccCCHHHHHHHHHHHHHHHHHHHhhcCccEEec--CCC-CCE
Confidence 00011 101 10 0001 125 799
Q ss_pred EEEEeCchHHHHHHHHHHHHhcCCceEEEEcccccccCcccHHHHhccCCCCCeeEEEEecCCcccccccccCcce-EEE
Q 006816 518 ILIGTGTELSLCEGTAKTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLPSRVVKRVSVEAGSSVGWREYVGVEGK-VIG 596 (630)
Q Consensus 518 tiva~G~~v~~a~~aa~~L~~~gi~~~Vi~~~~i~pld~~~~~~~~~v~~~~~~~~v~vEe~~~~g~~~~~~~~~~-~~g 596 (630)
+||++|+++..|++|++.|+++|++++||++++++|||.+.+. +.+ ++..++ +|+|++. .+++..+..... ...
T Consensus 295 ~iva~G~~~~~~~eA~~~L~~~Gi~v~vi~~r~~~Pld~~~i~--~~~-~~~~~v-vvvEe~~-G~l~~~v~~~~~~~~~ 369 (395)
T 1yd7_A 295 GVVATGIVARSALRAVKMLREEGIKAGLLKIETIWPFDFELIE--RIA-ERVDKL-YVPEMNL-GQLYHLIKEGANGKAE 369 (395)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEECccHHHHHHHHHHHHHcCCceEEEEeCeecCCCHHHHH--HHH-hcCCEE-EEEeCCc-hHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999999999999999999875 233 333355 9999996 333422211000 000
Q ss_pred eccCCCCCCHHHHHHHcCCChHHHHHHHHHhhh
Q 006816 597 VEEFGASGAYLDTFKKYGFTIDNVTKVARSLLS 629 (630)
Q Consensus 597 ~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l~ 629 (630)
+...+..| -.-++++.|.++++++++
T Consensus 370 ~~~~gk~~-------g~~~~~~ei~~~i~~~~~ 395 (395)
T 1yd7_A 370 VKLISKIG-------GEVHTPMEIFEFIRREFK 395 (395)
T ss_dssp ---------------------------------
T ss_pred eEEEeccC-------CCcCCHHHHHHHHHHhhC
Confidence 01111111 124678888888887653
No 31
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=99.62 E-value=1.4e-15 Score=172.10 Aligned_cols=118 Identities=14% Similarity=0.246 Sum_probs=101.7
Q ss_pred cccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCcccc
Q 006816 101 TTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDG 180 (630)
Q Consensus 101 ~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~ 180 (630)
..|+||+++|+|+|++++. ++++|+|++|||+++ +.+++|++|+++++|.++||+|||+|++..
T Consensus 418 ~~g~~G~~l~~A~Gaala~--------------~~~~vv~~~GDG~~~--~~~~~l~~a~~~~lp~~~vv~nN~~~~~~~ 481 (603)
T 4feg_A 418 LFATMGVGIPGAIAAKLNY--------------PERQVFNLAGDGGAS--MTMQDLATQVQYHLPVINVVFTNCQYGFIK 481 (603)
T ss_dssp SSCCTTCHHHHHHHHHHHC--------------TTSCEEEEEEHHHHH--HHGGGHHHHHHTTCCCEEEEEECSBCHHHH
T ss_pred ccccccchhHHHhhHHHhC--------------CCCcEEEEeccHHHh--hhHHHHHHHHHHCcCeEEEEEECCchHHHH
Confidence 3589999999999999997 788999999999998 568999999999999999999999998732
Q ss_pred cc----------c-ccChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHH--hcCCCcEEEEEeecccc
Q 006816 181 PT----------S-LVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAA--NETKKPTFIRVKKMRER 239 (630)
Q Consensus 181 ~~----------~-~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~--~~~~~P~~i~~~t~k~~ 239 (630)
.. . .....|+.+++++||+++++| + +++++.+++++++ + .++|++|||.|.+++
T Consensus 482 ~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v---~-~~~~l~~al~~a~~~~-~~gP~lIev~~~~~~ 548 (603)
T 4feg_A 482 DEQEDTNQNDFIGVEFNDIDFSKIADGVHMQAFRV---N-KIEQLPDVFEQAKAIA-QHEPVLIDAVITGDR 548 (603)
T ss_dssp HHHHHHCSSCCCSSBCCCCCHHHHHHHTTCEEEEE---C-BGGGHHHHHHHHHHHT-TTSCEEEEEECCCCC
T ss_pred HHHHHhcCCCcccCcCCCCCHHHHHHHCCCeEEEE---C-CHHHHHHHHHHHHHhc-CCCcEEEEEEeCCCC
Confidence 11 1 113468999999999999999 4 7789999999998 7 789999999997665
No 32
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=99.62 E-value=9.8e-16 Score=173.03 Aligned_cols=118 Identities=11% Similarity=0.202 Sum_probs=104.7
Q ss_pred cccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCcccc
Q 006816 101 TTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDG 180 (630)
Q Consensus 101 ~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~ 180 (630)
..|+||+++|.|+|+|+|. ++++|+|++|||+|+ +.+++|++|+++++|++++|+|||+|++.+
T Consensus 411 ~~g~mG~~l~~AiGaala~--------------~~~~vv~i~GDG~~~--~~~~~L~ta~~~~l~~~ivv~NN~~~~~~~ 474 (590)
T 1v5e_A 411 LFATMGIAIPGGLGAKNTY--------------PDRQVWNIIGDGAFS--MTYPDVVTNVRYNMPVINVVFSNTEYAFIK 474 (590)
T ss_dssp SSCCTTCHHHHHHHHHHHC--------------TTSCEEEEEEHHHHH--HHGGGHHHHHHTTCCCEEEEEECSSCTTGG
T ss_pred CCCcccChHHHHHHHHHhC--------------CCCeEEEEEechHHh--chHHHHHHHHHhCCCCEEEEEECCchHHHH
Confidence 4699999999999999997 788999999999999 668999999999999999999999999987
Q ss_pred ccccc----------ChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcC---CCcEEEEEeecccc
Q 006816 181 PTSLV----------LSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANET---KKPTFIRVKKMRER 239 (630)
Q Consensus 181 ~~~~~----------~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~---~~P~~i~~~t~k~~ 239 (630)
..+.. ...|+.+++++|||++++| + +.+++.++++++.+ . ++|++|++.|.+..
T Consensus 475 ~~q~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v---~-~~~el~~al~~a~~-~~~~~gp~liev~~~~~~ 541 (590)
T 1v5e_A 475 NKYEDTNKNLFGVDFTDVDYAKIAEAQGAKGFTV---S-RIEDMDRVMAEAVA-ANKAGHTVVIDCKITQDR 541 (590)
T ss_dssp GTTSSSCCSCCCCCCCCCCHHHHHHHTTSEEEEE---C-BHHHHHHHHHHHHH-HHHTTCCEEEEEECCSCC
T ss_pred HHHHHhcCCCccccCCCCCHHHHHHHcCCEEEEE---C-CHHHHHHHHHHHHH-hcCCCCCEEEEEEecccc
Confidence 54321 2468999999999999999 4 88999999998876 4 89999999998764
No 33
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=99.61 E-value=8.2e-16 Score=175.77 Aligned_cols=118 Identities=17% Similarity=0.205 Sum_probs=105.1
Q ss_pred cccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCcccc
Q 006816 101 TTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDG 180 (630)
Q Consensus 101 ~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~ 180 (630)
..|+||+++|+|+|+|+|. ++++|||++|||+|+ |.+++|++|+++++|.+++|+|||+|++.+
T Consensus 511 ~~G~mG~~lpaAiGaalA~--------------p~~~Vv~i~GDGsf~--~~~~eL~ta~~~~l~v~ivV~NN~~~g~~~ 574 (677)
T 1t9b_A 511 GLGTMGYGLPAAIGAQVAK--------------PESLVIDIDGDASFN--MTLTELSSAVQAGTPVKILILNNEEQGMVT 574 (677)
T ss_dssp SSCCTTCHHHHHHHHHHHC--------------TTSEEEEEEEHHHHH--HHGGGHHHHHHHTCCCEEEEEECSSCHHHH
T ss_pred CcchhhchHHHHHHHHHhC--------------CCCeEEEEEeehHHh--ccHHHHHHHHHhCCCeEEEEEeCCCchhhh
Confidence 3589999999999999997 789999999999999 788999999999999999999999999865
Q ss_pred ccc-----------ccChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeecccc
Q 006816 181 PTS-----------LVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRER 239 (630)
Q Consensus 181 ~~~-----------~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~~ 239 (630)
..+ .....|+.+++++||+++++| + +.+++.++++++++ .++|++|||.|.++.
T Consensus 575 ~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v---~-~~~el~~al~~a~~-~~gp~lIev~~~~~~ 639 (677)
T 1t9b_A 575 QWQSLFYEHRYSHTHQLNPDFIKLAEAMGLKGLRV---K-KQEELDAKLKEFVS-TKGPVLLEVEVDKKV 639 (677)
T ss_dssp HHHHHHSTTCCCSCCCCCCCHHHHHHHTTCEEEEE---C-SHHHHHHHHHHHHH-CSSCEEEEEEBCSSC
T ss_pred hhhhhhcCCCcccCcCCCCCHHHHHHHcCCeEEEE---C-CHHHHHHHHHHHHH-CCCcEEEEEEecCCc
Confidence 422 112468999999999999999 5 89999999999987 789999999999876
No 34
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=99.61 E-value=6.8e-16 Score=173.55 Aligned_cols=118 Identities=20% Similarity=0.222 Sum_probs=104.4
Q ss_pred cccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCcccc
Q 006816 101 TTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDG 180 (630)
Q Consensus 101 ~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~ 180 (630)
..|+||+++|.|+|+|+|. ++++|+|++|||+|+ +.+++|++|+++++|.+++|+|||+|++.+
T Consensus 418 g~g~mG~~l~~AiGaala~--------------~~~~vv~i~GDG~~~--~~~~~L~ta~~~~l~~~ivv~nN~~~~~~~ 481 (566)
T 1ozh_A 418 GQQTMGVALPWAIGAWLVN--------------PERKVVSVSGDGGFL--QSSMELETAVRLKANVLHLIWVDNGYNMVA 481 (566)
T ss_dssp TTCCTTCHHHHHHHHHHHS--------------TTSEEEEEEEHHHHH--HHTTHHHHHHHHTCCEEEEEEECSBCHHHH
T ss_pred CcccccchHHHHHHHHHhC--------------CCCCEEEEEcChHHh--ccHHHHHHHHHhCCCcEEEEEECCchhHHH
Confidence 4699999999999999997 789999999999999 678999999999999999999999999876
Q ss_pred ccc----------ccChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeecccc
Q 006816 181 PTS----------LVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRER 239 (630)
Q Consensus 181 ~~~----------~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~~ 239 (630)
..+ .....|+.+++++|||++++| + +.+++.++++++++ .++|++|++.|.+..
T Consensus 482 ~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v---~-~~~el~~al~~a~~-~~gp~liev~~~~~~ 545 (566)
T 1ozh_A 482 IQEEKKYQRLSGVEFGPMDFKAYAESFGAKGFAV---E-SAEALEPTLRAAMD-VDGPAVVAIPVDYRD 545 (566)
T ss_dssp HHHHHHHSSCCSCBCCCCCHHHHHHTTTSEEEEC---C-SGGGHHHHHHHHHH-SSSCEEEEEEBCCTT
T ss_pred HHHHHhcCCCccCcCCCCCHHHHHHHcCCeEEEe---C-CHHHHHHHHHHHHh-CCCCEEEEEEeCCCc
Confidence 432 122478999999999999998 4 78899999999987 789999999998764
No 35
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=99.60 E-value=8.2e-16 Score=173.21 Aligned_cols=116 Identities=21% Similarity=0.229 Sum_probs=103.4
Q ss_pred cccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCcccc
Q 006816 101 TTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDG 180 (630)
Q Consensus 101 ~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~ 180 (630)
..|+||+++|.|+|+|+|. ++++|+|++|||+|+ +.+++|++|+++++|.+++|+|||+|++.+
T Consensus 434 g~g~mG~~l~~AiGaa~a~--------------~~~~vv~i~GDG~~~--~~~~~L~~a~~~~l~~~ivv~NN~~~~~~~ 497 (573)
T 2iht_A 434 GCSSFGYGIPAAIGAQMAR--------------PDQPTFLIAGDGGFH--SNSSDLETIARLNLPIVTVVVNNDTNGLIE 497 (573)
T ss_dssp SSCCTTCHHHHHHHHHHHS--------------TTSCEEEEEEHHHHH--HTGGGHHHHHHHTCCCEEEEEECSBCHHHH
T ss_pred CCcccccHHHHHHHHHHhC--------------CCCcEEEEEccHHHH--hHHHHHHHHHHhCCCeEEEEEECCcchhhH
Confidence 4599999999999999997 688999999999999 668999999999999999999999999877
Q ss_pred ccc------------ccChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeecc
Q 006816 181 PTS------------LVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMR 237 (630)
Q Consensus 181 ~~~------------~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k 237 (630)
..+ .....|+.+++++|||++++| + +.+++.++++++++ .++|++||+.|.|
T Consensus 498 ~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v---~-~~~~l~~al~~a~~-~~gp~liev~~~~ 561 (573)
T 2iht_A 498 LYQNIGHHRSHDPAVKFGGVDFVALAEANGVDATRA---T-NREELLAALRKGAE-LGRPFLIEVPVNY 561 (573)
T ss_dssp HHHHHHHSSCCGGGTBCCCCCHHHHHHHTTCEEEEC---C-SHHHHHHHHHHHHT-SSSCEEEEEEBCC
T ss_pred HHHHHhcCCCcCccccCCCCCHHHHHHHcCCeEEEe---C-CHHHHHHHHHHHHh-CCCCEEEEEECCC
Confidence 531 112368999999999999998 5 89999999999997 7899999999987
No 36
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=99.60 E-value=1e-15 Score=173.06 Aligned_cols=118 Identities=18% Similarity=0.182 Sum_probs=104.1
Q ss_pred cccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCcccc
Q 006816 101 TTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDG 180 (630)
Q Consensus 101 ~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~ 180 (630)
..|+||+++|+|+|+|+|. ++++|+|++|||+|+ +.+++|++|+++++|.+++|+|||+|++.+
T Consensus 424 ~~G~~G~~l~~AiGaala~--------------~~~~vv~i~GDGs~~--~~~~~L~ta~~~~l~~~ivv~NN~~~~~~~ 487 (590)
T 1ybh_A 424 GLGAMGFGLPAAIGASVAN--------------PDAIVVDIDGDGSFI--MNVQELATIRVENLPVKVLLLNNQHLGMVM 487 (590)
T ss_dssp SSCCTTCHHHHHHHHHHHC--------------TTSCEEEEEEHHHHH--HTTTHHHHHHHTTCCEEEEEEECSBCHHHH
T ss_pred CcccccchHHHHHHHHHhC--------------CCCcEEEEEccchhh--ccHHHHHHHHHhCCCcEEEEEECCcchHHH
Confidence 3599999999999999997 788999999999999 678999999999999999999999998865
Q ss_pred ccc----------c-c-C-------hhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeecccc
Q 006816 181 PTS----------L-V-L-------SEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRER 239 (630)
Q Consensus 181 ~~~----------~-~-~-------~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~~ 239 (630)
..+ . . . ..|+.+++++||+++++| + +.+++.++++++++ .++|++||+.|.++.
T Consensus 488 ~~~~~~~~~~~~~~~~~~p~~~~~~~~d~~~~a~a~G~~~~~v---~-~~~el~~al~~a~~-~~gp~liev~~~~~~ 560 (590)
T 1ybh_A 488 QWEDRFYKANRAHTFLGDPAQEDEIFPNMLLFAAACGIPAARV---T-KKADLREAIQTMLD-TPGPYLLDVICPHQE 560 (590)
T ss_dssp HHHHHHSTTCCCSCBCSCGGGTTSCSSCHHHHHHHTTCCEEEE---C-BHHHHHHHHHHHHH-SSSCEEEEEECCTTC
T ss_pred HHHHHhcCCccccccccccccccCCCCCHHHHHHHcCCeEEEe---C-CHHHHHHHHHHHHh-CCCCEEEEEEecCCc
Confidence 321 1 0 1 358999999999999999 5 89999999999988 689999999999877
No 37
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=99.60 E-value=1.5e-15 Score=170.65 Aligned_cols=119 Identities=20% Similarity=0.235 Sum_probs=104.4
Q ss_pred cccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCcccc
Q 006816 101 TTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDG 180 (630)
Q Consensus 101 ~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~ 180 (630)
..|+||+++|.|+|+|+|.| + ++++|+|++|||+++ +.+++|++|+++++|.+++|+|||+|++.+
T Consensus 417 g~g~~G~~l~~AiGaa~a~~--~----------~~~~vv~i~GDG~~~--~~~~~L~ta~~~~l~~~ivv~nN~~~~~~~ 482 (563)
T 2uz1_A 417 YLGSMGVGFGTALGAQVADL--E----------AGRRTILVTGDGSVG--YSIGEFDTLVRKQLPLIVIIMNNQSWGATL 482 (563)
T ss_dssp TTCCTTTHHHHHHHHHHHHH--H----------HTCEEEEEEEHHHHG--GGTTHHHHHHHHTCCCEEEEEECSBCHHHH
T ss_pred CCccccChHHHHHHHHHHhh--C----------CCCeEEEEEccHHHh--CCHHHHHHHHHhCCCeEEEEEeCCcchHHH
Confidence 36999999999999999986 3 678999999999999 568899999999999999999999999876
Q ss_pred ccc-------cc-----ChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeeccc
Q 006816 181 PTS-------LV-----LSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRE 238 (630)
Q Consensus 181 ~~~-------~~-----~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~ 238 (630)
..+ .. ...|+.+++++||+++++| + +.+++.++++++++ .++|++||+.|.+.
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v---~-~~~~l~~al~~a~~-~~gp~liev~~~~~ 547 (563)
T 2uz1_A 483 HFQQLAVGPNRVTGTRLENGSYHGVAAAFGADGYHV---D-SVESFSAALAQALA-HNRPACINVAVALD 547 (563)
T ss_dssp HHHHHHTCTTCCCSCBCCCCCHHHHHHHTTCEEEEE---C-SHHHHHHHHHHHHH-SSSCEEEEEECCSC
T ss_pred HHHHHhcCCCcccCCcCCCCCHHHHHHHcCCeEEEe---C-CHHHHHHHHHHHHH-CCCCEEEEEEeccc
Confidence 532 11 2468999999999999999 5 89999999999987 78999999999753
No 38
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=99.59 E-value=8e-16 Score=173.77 Aligned_cols=121 Identities=21% Similarity=0.286 Sum_probs=105.9
Q ss_pred ccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCccccc
Q 006816 102 TGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGP 181 (630)
Q Consensus 102 ~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~ 181 (630)
.|+||+++|.|+|+|+|. ++++|+|++|||+|+ +.+++|++|+++++|.+++|+|||+|++.+.
T Consensus 423 ~g~mG~~l~~AiGaala~--------------~~~~vv~i~GDG~~~--~~~~~L~ta~~~~l~~~ivv~nN~~~~~~~~ 486 (589)
T 2pgn_A 423 EGILGCGFPMALGAQLAE--------------PNSRVFLGTGDGALY--YHFNEFRVAVEHKLPVITMVFTNESYGANWT 486 (589)
T ss_dssp TCCTTCHHHHHHHHHHHC--------------TTSCEEEEEEHHHHH--HHGGGHHHHHHTTCCCEEEEEECSBCHHHHH
T ss_pred cchhhhHHHHHHHHHHhC--------------CCCcEEEEEeeHHHH--hhHHHHHHHHHhCCCeEEEEEECCCcccchH
Confidence 599999999999999997 788999999999999 6689999999999999999999999998775
Q ss_pred ccc----------cChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeecccccCccc
Q 006816 182 TSL----------VLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRERVNWVD 244 (630)
Q Consensus 182 ~~~----------~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~~~g~~~ 244 (630)
.+. ....|+.+++++||+++++| + +.+++.++++++.+ .++|++||+.|.+.. +..|
T Consensus 487 ~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v---~-~~~el~~al~~a~~-~~gp~liev~~~~~~-~~~~ 553 (589)
T 2pgn_A 487 LMNHQFGQNNWTEFMNPDWVGIAKAFGAYGESV---R-ETGDIAGALQRAID-SGKPALIEIPVSKTQ-GLAS 553 (589)
T ss_dssp HHHHHHSSCCSCBCCCCCHHHHHHHHTCEEEEC---T-TTCCHHHHHHHHHH-HCSCEEEEEECCSSS-STTT
T ss_pred HHHhhcCCCccccCCCCCHHHHHHHCCCeEEEE---C-CHHHHHHHHHHHHh-CCCCEEEEEEecCCC-CcCc
Confidence 421 12478999999999999998 4 67889999999987 689999999999877 5543
No 39
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=99.59 E-value=1.2e-15 Score=171.55 Aligned_cols=118 Identities=17% Similarity=0.252 Sum_probs=105.2
Q ss_pred cccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCcccc
Q 006816 101 TTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDG 180 (630)
Q Consensus 101 ~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~ 180 (630)
..|+||+++|+|+|+|+|. ++++|+|++|||+|+ +.+++|++|+++++|++++|+|||+|++.+
T Consensus 407 ~~g~mG~~l~~A~G~ala~--------------~~~~vv~~~GDG~~~--~~~~eL~ta~~~~l~~~ivv~nN~~~~~~~ 470 (566)
T 2vbi_A 407 QWGHIGWSVPSAFGNAMGS--------------QDRQHVVMVGDGSFQ--LTAQEVAQMVRYELPVIIFLINNRGYVIEI 470 (566)
T ss_dssp TTCCTTTHHHHHHHHHHTC--------------TTSEEEEEEEHHHHH--HHGGGHHHHHHTTCCCEEEEEECSSCHHHH
T ss_pred cccchhhHHHHHHHHHHhC--------------CCCcEEEEEcchHHH--hhHHHHHHHHHhCCCcEEEEEECCcceEEE
Confidence 4689999999999999997 789999999999999 678999999999999999999999999987
Q ss_pred cccc-----cChhcHHHHHHhCCC-----eEEEEeCCCCCHHHHHHHHHHHHhcC-CCcEEEEEeecccc
Q 006816 181 PTSL-----VLSEDISARFKSLGW-----NTIMVENIHDNLSSFKEALMAAANET-KKPTFIRVKKMRER 239 (630)
Q Consensus 181 ~~~~-----~~~~~~~~~~~a~G~-----~~~~v~dG~~d~~~l~~al~~a~~~~-~~P~~i~~~t~k~~ 239 (630)
..+. ....|+.+++++||+ ++++| + +.+++.++++++++ . ++|++||+.|.|..
T Consensus 471 ~~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~~~v---~-~~~el~~al~~a~~-~~~gp~liev~~~~~~ 535 (566)
T 2vbi_A 471 AIHDGPYNYIKNWDYAGLMEVFNAGEGHGLGLKA---T-TPKELTEAIARAKA-NTRGPTLIECQIDRTD 535 (566)
T ss_dssp TTSCCGGGCCCCCCTTTHHHHHHTTTCCCEEEEE---C-SHHHHHHHHHHHHH-CCSSCEEEEEECCTTC
T ss_pred eeccCCccCCCCCCHHHHHHHcCCCCCCccEEEe---C-CHHHHHHHHHHHHh-cCCCcEEEEEEeCccc
Confidence 6542 224688999999999 99999 5 89999999999987 5 89999999998754
No 40
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=99.58 E-value=2.5e-15 Score=169.16 Aligned_cols=118 Identities=19% Similarity=0.238 Sum_probs=105.2
Q ss_pred cccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCcccc
Q 006816 101 TTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDG 180 (630)
Q Consensus 101 ~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~ 180 (630)
..|+||+++|+|+|+|+|. ++++|+|++|||+|+ +.+++|++|+++++|.+++|+|||+|++.+
T Consensus 411 ~~g~~G~~l~~A~G~ala~--------------~~~~vv~i~GDGs~~--~~~~el~ta~~~~l~~~ivv~NN~~~~~~~ 474 (568)
T 2wvg_A 411 QWGHIGWSVPAAFGYAVGA--------------PERRNILMVGDGSFQ--LTAQEVAQMVRLKLPVIIFLINNYGYTIEV 474 (568)
T ss_dssp TTCCTTTHHHHHHHHHHHC--------------TTSEEEEEEEHHHHH--HHGGGHHHHHHTTCCCEEEEEECSSCHHHH
T ss_pred CcchhhhHHHHHHHHHHhC--------------CCCcEEEEEcChhHh--ccHHHHHHHHHcCCCcEEEEEECCcceEee
Confidence 4689999999999999997 789999999999999 789999999999999999999999999987
Q ss_pred cccc-----cChhcHHHHHHhCCC---------eEEEEeCCCCCHHHHHHHHHHHHhcC-CCcEEEEEeecccc
Q 006816 181 PTSL-----VLSEDISARFKSLGW---------NTIMVENIHDNLSSFKEALMAAANET-KKPTFIRVKKMRER 239 (630)
Q Consensus 181 ~~~~-----~~~~~~~~~~~a~G~---------~~~~v~dG~~d~~~l~~al~~a~~~~-~~P~~i~~~t~k~~ 239 (630)
..+. ....|+.+++++||+ ++++| + +.+++.++++++.+ . ++|++||+.|.+..
T Consensus 475 ~~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~~~~~~~v---~-~~~el~~al~~a~~-~~~gp~liev~~~~~~ 543 (568)
T 2wvg_A 475 MIHDGPYNNIKNWDYAGLMEVFNGNGGYDSGAGKGLKA---K-TGGELAEAIKVALA-NTDGPTLIECFIGRED 543 (568)
T ss_dssp TTSCCGGGCCCCCCHHHHHHHHHCTTSSSCCCCEEEEE---S-BHHHHHHHHHHHHH-CCSSCEEEEEECCTTC
T ss_pred eeccCCCcCCCCCCHHHHHHHhCCCcccccCCcceEEe---C-CHHHHHHHHHHHHh-cCCCcEEEEEEcCccc
Confidence 6542 224689999999999 89999 5 89999999999987 5 89999999998754
No 41
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=99.58 E-value=2e-15 Score=168.43 Aligned_cols=115 Identities=26% Similarity=0.334 Sum_probs=101.3
Q ss_pred cccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCcccccc
Q 006816 103 GPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGPT 182 (630)
Q Consensus 103 G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~~ 182 (630)
|+||+++|.|+|+|+|. ++++|+|++|||+|+ +.+|+|++|+++++|.+++|+|||+|++.+..
T Consensus 401 g~~G~~l~~A~G~a~a~--------------~~~~vv~~~GDG~~~--~~~~~l~~a~~~~l~~~ivv~nN~~~~~~~~~ 464 (528)
T 1q6z_A 401 GGLGFALPAAIGVQLAE--------------PERQVIAVIGDGSAN--YSISALWTAAQYNIPTIFVIMNNGTYGALRWF 464 (528)
T ss_dssp CCTTSHHHHHHHHHHHC--------------TTSCEEEEEEHHHHT--TTGGGHHHHHHHTCCCEEEEEECSBCHHHHHH
T ss_pred ccccchHHHHHHHHHhC--------------CCCcEEEEECCcHHH--hhHHHHHHHHHhCCCeEEEEEeCCcchHhHHH
Confidence 99999999999999997 678999999999999 55999999999999999999999999986653
Q ss_pred cc-----------cChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeeccc
Q 006816 183 SL-----------VLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRE 238 (630)
Q Consensus 183 ~~-----------~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~ 238 (630)
+. ....|+.+++++||+++++| | +.+++.++++++++ .++|++||+.|.+.
T Consensus 465 ~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v-~---~~~~l~~al~~a~~-~~gp~liev~~~~~ 526 (528)
T 1q6z_A 465 AGVLEAENVPGLDVPGIDFRALAKGYGVQALKA-D---NLEQLKGSLQEALS-AKGPVLIEVSTVSP 526 (528)
T ss_dssp HHHHTCCSCCSCBCCCCCHHHHHHHHTCEEEEE-S---SHHHHHHHHHHHHT-CSSCEEEEEEBCC-
T ss_pred HHHhcCCCcccCCCCCCCHHHHHHHcCCeEEEe-C---CHHHHHHHHHHHHH-CCCcEEEEEEecCC
Confidence 21 12468999999999999999 4 77899999999987 78999999998764
No 42
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=99.58 E-value=2.2e-15 Score=169.57 Aligned_cols=118 Identities=18% Similarity=0.272 Sum_probs=102.8
Q ss_pred cccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCcccc
Q 006816 101 TTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDG 180 (630)
Q Consensus 101 ~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~ 180 (630)
..|+||+++|+|+|+|+|. ++++|+|++|||+|+ +.+++|++|+++++|.+++|+|||+|++.+
T Consensus 423 ~~g~mG~~l~~A~Gaala~--------------~~~~vv~~~GDG~~~--~~~~eL~ta~~~~l~~~ivv~nN~~~~~~~ 486 (570)
T 2vbf_A 423 LWGSIGYTFPAALGSQIAD--------------KESRHLLFIGDGSLQ--LTVQELGLSIREKLNPICFIINNDGYTVER 486 (570)
T ss_dssp TTCCTTTHHHHHHHHHHHC--------------TTSEEEEEEEHHHHH--HHGGGHHHHHHTTCCCEEEEEESSSCHHHH
T ss_pred cchhhhhhHHHHHHHHHhC--------------CCCcEEEEEcchhhh--cCHHHHHHHHHcCCCCEEEEEECCchHHHH
Confidence 5699999999999999997 789999999999999 678999999999999999999999999866
Q ss_pred ccc-------ccChhcHHHHHHhCCCe-----EEEEeCCCCCHHHHHHHHHH-HHhcCCCcEEEEEeecccc
Q 006816 181 PTS-------LVLSEDISARFKSLGWN-----TIMVENIHDNLSSFKEALMA-AANETKKPTFIRVKKMRER 239 (630)
Q Consensus 181 ~~~-------~~~~~~~~~~~~a~G~~-----~~~v~dG~~d~~~l~~al~~-a~~~~~~P~~i~~~t~k~~ 239 (630)
... .....|+.+++++||++ +++| + +.+++.+++++ +++ .++|++||+.|.+..
T Consensus 487 ~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~~~v---~-~~~el~~al~~a~~~-~~~p~liev~~~~~~ 553 (570)
T 2vbf_A 487 EIHGPTQSYNDIPMWNYSKLPETFGATEDRVVSKIV---R-TENEFVSVMKEAQAD-VNRMYWIELVLEKED 553 (570)
T ss_dssp HHSCTTCGGGCCCCCCGGGHHHHTTCCTTTEEEEEE---C-BHHHHHHHHHHHHHC-TTSEEEEEEECCTTC
T ss_pred HHhccCCCccCCCCCCHHHHHHHcCCCcCCcceEEe---c-CHHHHHHHHHHHHhc-CCCcEEEEEEcCccc
Confidence 432 11246899999999998 8998 5 89999999998 465 689999999997654
No 43
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=99.57 E-value=3.9e-15 Score=166.84 Aligned_cols=118 Identities=16% Similarity=0.207 Sum_probs=102.4
Q ss_pred cccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCcccc
Q 006816 101 TTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDG 180 (630)
Q Consensus 101 ~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~ 180 (630)
..|+||+++|.|+|+++|. ++++|+|++|||+|+ |.+++|++|+++++|.+++|+|||+|++..
T Consensus 404 ~~g~mG~~l~~AiGaala~--------------~~~~vv~i~GDGs~~--~~~~~L~ta~~~~l~~~ivv~nN~~~g~~~ 467 (549)
T 3eya_A 404 NHGSMANAMPQALGAQATE--------------PERQVVAMCGDGGFS--MLMGDFLSVVQMKLPVKIVVFNNSVLGFVA 467 (549)
T ss_dssp TTCCTTCHHHHHHHHHHHS--------------TTSCEEEEEEHHHHH--HTGGGHHHHHHTTCCCEEEEEECSBCCCC-
T ss_pred CCchhhhHHHHHHHHHHhC--------------CCCcEEEEEccchhh--ccHHHHHHHHHhCCCeEEEEEeCCccHHHH
Confidence 4589999999999999998 788999999999998 779999999999999999999999998754
Q ss_pred cccc----------cChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeecccc
Q 006816 181 PTSL----------VLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRER 239 (630)
Q Consensus 181 ~~~~----------~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~~ 239 (630)
..+. ....|+.+++++||+++++| + +.+++.++++++++ .++|++|||.|.+..
T Consensus 468 ~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v---~-~~~~l~~al~~a~~-~~gp~liev~~~~~~ 531 (549)
T 3eya_A 468 MEMKAGGYLTDGTELHDTNFARIAEACGITGIRV---E-KASEVDEALQRAFS-IDGPVLVDVVVAKEE 531 (549)
T ss_dssp -----------CCBCCCCCHHHHHHHTTSEEEEE---C-SGGGHHHHHHHHHH-SSSCEEEEEEBCCCC
T ss_pred HHHHhcCCCCcCCcCCCCCHHHHHHHcCCcEEEe---C-CHHHHHHHHHHHHh-CCCCEEEEEEecccc
Confidence 3221 12468999999999999999 5 88899999999998 789999999998765
No 44
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=99.57 E-value=1.7e-15 Score=169.94 Aligned_cols=118 Identities=16% Similarity=0.189 Sum_probs=103.6
Q ss_pred cccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCcccc
Q 006816 101 TTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDG 180 (630)
Q Consensus 101 ~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~ 180 (630)
..|+||+++|+|+|+|+|. ++++|+|++|||+|+ +.+++|.+|+++++|++++|+|||+|++.+
T Consensus 406 ~~g~mG~~l~~A~G~a~a~--------------~~~~vv~~~GDG~~~--~~~~el~ta~~~~l~~~ivv~nN~~~~~~~ 469 (552)
T 1ovm_A 406 LWGSIGYTLAAAFGAQTAC--------------PNRRVIVLTGDGAAQ--LTIQELGSMLRDKQHPIILVLNNEGYTVER 469 (552)
T ss_dssp TTCCTTHHHHHHHHHHHHC--------------TTSCEEEEEEHHHHH--HHTTHHHHHHHTTCCCEEEEEESSSCHHHH
T ss_pred hhHhhhhHHHHHHHHHHhC--------------CCCcEEEEECchHHH--hHHHHHHHHHHhCCCCEEEEEECCCCeEEE
Confidence 4799999999999999997 688999999999999 789999999999999999999999999874
Q ss_pred ccc-------ccChhcHHHHHHhCCC----eEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeecccc
Q 006816 181 PTS-------LVLSEDISARFKSLGW----NTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRER 239 (630)
Q Consensus 181 ~~~-------~~~~~~~~~~~~a~G~----~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~~ 239 (630)
... .....|+.+++++||| ++++| + +.+++.++++++++ .++|++||+.|.+..
T Consensus 470 ~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~~v---~-~~~~l~~al~~a~~-~~gp~liev~~~~~~ 534 (552)
T 1ovm_A 470 AIHGAEQRYNDIALWNWTHIPQALSLDPQSECWRV---S-EAEQLADVLEKVAH-HERLSLIEVMLPKAD 534 (552)
T ss_dssp HHSCTTCGGGCCCCCCGGGSTTTSCSSCCEEEEEE---C-BHHHHHHHHHHHTT-CSSEEEEEEECCTTC
T ss_pred eeccCCCCcccCCCCCHHHHHHHhCCCcCCCEEEe---C-CHHHHHHHHHHHHh-CCCCEEEEEEcCccc
Confidence 321 1124688999999999 99999 5 89999999999987 789999999997643
No 45
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=99.57 E-value=1.7e-15 Score=170.21 Aligned_cols=118 Identities=14% Similarity=0.148 Sum_probs=104.0
Q ss_pred cccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCcccc
Q 006816 101 TTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDG 180 (630)
Q Consensus 101 ~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~ 180 (630)
..|+||+++|+|+|+|+|. ++++|+|++|||+|+ |.+++|++|+++++|++++|+|||+|++.+
T Consensus 420 ~~g~mG~~l~~A~G~ala~--------------~~~~vv~i~GDG~~~--~~~~~l~ta~~~~l~~~ivv~nN~~~~~~~ 483 (565)
T 2nxw_A 420 YYAGMGFGVPAGIGAQCVS--------------GGKRILTVVGDGAFQ--MTGWELGNCRRLGIDPIVILFNNASWEMLR 483 (565)
T ss_dssp TTCCTTCHHHHHHHHHHHT--------------TTCCEEEEEEHHHHH--HHGGGGGGHHHHTCCCEEEEEECSBCHHHH
T ss_pred ccccccccchHHHHHHHhC--------------CCCcEEEEEechHHH--hhHHHHHHHHHhCCCCEEEEEECCCCcEEe
Confidence 3589999999999999997 788999999999999 999999999999999999999999999865
Q ss_pred ccc------ccChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcE-EEEEeecccc
Q 006816 181 PTS------LVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPT-FIRVKKMRER 239 (630)
Q Consensus 181 ~~~------~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~-~i~~~t~k~~ 239 (630)
..+ .....|+.+++++||+++++| + +.+++.++++++.+ .++|+ +||+.|.+..
T Consensus 484 ~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v---~-~~~el~~al~~a~~-~~gp~~liev~~~~~~ 544 (565)
T 2nxw_A 484 TFQPESAFNDLDDWRFADMAAGMGGDGVRV---R-TRAELKAALDKAFA-TRGRFQLIEAMIPRGV 544 (565)
T ss_dssp HHCTTCGGGBCCCCCHHHHTGGGTSEEEEE---C-BHHHHHHHHHHHHH-CCSSCEEEEEECCTTC
T ss_pred eecccCCCCcCCCCCHHHHHHHcCCCEEEe---C-CHHHHHHHHHHHHh-cCCCeEEEEEEccccc
Confidence 432 123468999999999999999 4 88999999999987 67898 9999997653
No 46
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=99.57 E-value=2.5e-15 Score=168.95 Aligned_cols=124 Identities=17% Similarity=0.225 Sum_probs=104.0
Q ss_pred ccccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCccc
Q 006816 100 VTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTID 179 (630)
Q Consensus 100 ~~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~ 179 (630)
...|+||+++|.|+|+|+|.+.++ .+++|+|++|||+|+ |.+++|++|+++++|++++|+|||+|++.
T Consensus 410 ~~~g~mG~~l~~A~Gaala~~~~~----------~~~~vv~~~GDG~~~--~~~~el~ta~~~~l~~~ivv~nN~~~~~~ 477 (563)
T 2vk8_A 410 VLWGSIGFTTGATLGAAFAAEEID----------PKKRVILFIGDGSLQ--LTVQEISTMIRWGLKPYLFVLNNDGYTIQ 477 (563)
T ss_dssp TTTCCTTHHHHHHHHHHHHHHHHC----------TTCCEEEEEEHHHHH--HHGGGHHHHHHTTCCCEEEEEESSSCHHH
T ss_pred cchhhhhhHHHHHHHHHHhCcccC----------CCCCEEEEEcchHhh--ccHHHHHHHHHcCCCcEEEEEECCcchhh
Confidence 356999999999999999986543 468999999999998 77999999999999999999999999986
Q ss_pred cccc-------ccChhcHHHHHHhCCCe---EEEEeCCCCCHHHHHHHHH-HHHhcCCCcEEEEEeecccc
Q 006816 180 GPTS-------LVLSEDISARFKSLGWN---TIMVENIHDNLSSFKEALM-AAANETKKPTFIRVKKMRER 239 (630)
Q Consensus 180 ~~~~-------~~~~~~~~~~~~a~G~~---~~~v~dG~~d~~~l~~al~-~a~~~~~~P~~i~~~t~k~~ 239 (630)
+... .....|+.+++++||++ +++| + +.+++.++++ ++.+..++|++|++.|.+..
T Consensus 478 ~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~v---~-~~~el~~al~~~a~~~~~~p~liev~~~~~~ 544 (563)
T 2vk8_A 478 KLIHGPKAQYNEIQGWDHLSLLPTFGAKDYETHRV---A-TTGEWDKLTQDKSFNDNSKIRMIEVMLPVFD 544 (563)
T ss_dssp HHHSCTTCGGGCCCCCCGGGHHHHTTCSSEEEEEE---C-BHHHHHHHHTCTTTTSCSSEEEEEEECCTTC
T ss_pred hhhhCCCCCcccCCCCCHHHHHHHhCCCCCcEEEe---c-CHHHHHHHHHHHHHhCCCCcEEEEEEeCccc
Confidence 5321 11246899999999999 9999 4 8899999999 77752347999999997643
No 47
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=99.57 E-value=2.6e-15 Score=170.51 Aligned_cols=119 Identities=18% Similarity=0.209 Sum_probs=101.3
Q ss_pred cccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCcccc
Q 006816 101 TTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDG 180 (630)
Q Consensus 101 ~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~ 180 (630)
..|+||+++|+|+|+|+|. ++++|||++|||+|+ +.+++|++|+++++|.+++|+|||+|++.+
T Consensus 440 ~~G~~G~~l~~AiGaala~--------------~~~~vv~i~GDGs~~--~~~~~L~ta~~~~l~~~ivv~NN~~~~~~~ 503 (616)
T 2pan_A 440 QAGPLGWTIPAALGVCAAD--------------PKRNVVAISGDFDFQ--FLIEELAVGAQFNIPYIHVLVNNAYLGLIR 503 (616)
T ss_dssp TTCCTTCHHHHHHHHHHHC--------------TTCEEEEEEEHHHHH--HTGGGHHHHHHTTCCCEEEEEECSBCHHHH
T ss_pred CcccccchHHHHHHHHHhC--------------CCCcEEEEEcchhhh--CCHHHHHHHHHhCCCeEEEEEECCcchHHH
Confidence 3599999999999999997 788999999999999 668999999999999999999999998754
Q ss_pred ccc--------------c--cC-----hhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHh---cCCCcEEEEEeec
Q 006816 181 PTS--------------L--VL-----SEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAAN---ETKKPTFIRVKKM 236 (630)
Q Consensus 181 ~~~--------------~--~~-----~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~---~~~~P~~i~~~t~ 236 (630)
..+ . .. ..|+.+++++||+++++| + +.+++.++++++++ ..++|++||+.|.
T Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v---~-~~~el~~al~~a~~~~~~~~gp~lIev~~~ 579 (616)
T 2pan_A 504 QSQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRV---F-KPEDIAPAFEQAKALMAQYRVPVVVEVILE 579 (616)
T ss_dssp HHGGGGTCCCSCBCCCCCTTCGGGTTCCCCHHHHHHHTTCEEEEE---C-SGGGHHHHHHHHHHHHHHHCSCEEEEEEBC
T ss_pred HHHHHhcCCccccccccccccccCCCCCCCHHHHHHHcCCeEEEE---C-CHHHHHHHHHHHHhhcccCCCcEEEEEEec
Confidence 321 0 11 268999999999999999 4 78889999888764 0478999999999
Q ss_pred ccc
Q 006816 237 RER 239 (630)
Q Consensus 237 k~~ 239 (630)
|+.
T Consensus 580 ~~~ 582 (616)
T 2pan_A 580 RVT 582 (616)
T ss_dssp SCC
T ss_pred ccc
Confidence 876
No 48
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=99.50 E-value=5e-14 Score=158.46 Aligned_cols=117 Identities=15% Similarity=0.182 Sum_probs=99.7
Q ss_pred cccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCC-ccc
Q 006816 101 TTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHN-TID 179 (630)
Q Consensus 101 ~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~-~i~ 179 (630)
..|+||+++|+|+|++++. +++|+|++|||+|+ |.+++|++|+++++|.+++|+|||+| ++.
T Consensus 424 ~~g~~G~~l~~AiGaala~---------------~~~vv~i~GDGsf~--~~~~el~ta~~~~l~~~ivv~NN~~~~~~~ 486 (568)
T 2c31_A 424 TWGVMGIGMGYCVAAAAVT---------------GKPVIAVEGDSAFG--FSGMELETICRYNLPVTVIIMNNGGIYKGN 486 (568)
T ss_dssp TTTCSSCHHHHHHHHHHHH---------------CSCEEEEEEHHHHH--TTGGGHHHHHHTTCCEEEEEEESSBSSCSC
T ss_pred CCccccccHHHHHHHHhCC---------------CCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCchhHHHH
Confidence 4589999999999999972 57899999999998 78999999999999999999999984 443
Q ss_pred ccc---cc-----cChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeecccc
Q 006816 180 GPT---SL-----VLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRER 239 (630)
Q Consensus 180 ~~~---~~-----~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~~ 239 (630)
... .. ....|+.+++++||+++++| + +.+++.++++++.+ .++|++||+.|.+..
T Consensus 487 ~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v---~-~~~el~~al~~a~~-~~~p~liev~~~~~~ 549 (568)
T 2c31_A 487 EADPQPGVISCTRLTRGRYDMMMEAFGGKGYVA---N-TPAELKAALEEAVA-SGKPCLINAMIDPDA 549 (568)
T ss_dssp CCCSBTTBCCTTBCCCCCHHHHHHTTTCEEEEE---S-SHHHHHHHHHHHHH-HTSCEEEEEEBCTTS
T ss_pred HHHhhcCCcccCcCCCCCHHHHHHHcCCeEEEe---C-CHHHHHHHHHHHHh-CCCCEEEEEEecccc
Confidence 211 00 23468999999999999999 5 89999999999987 689999999998765
No 49
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=99.48 E-value=1.9e-14 Score=162.98 Aligned_cols=116 Identities=13% Similarity=0.084 Sum_probs=100.0
Q ss_pred ccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCccccc
Q 006816 102 TGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGP 181 (630)
Q Consensus 102 ~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~ 181 (630)
.|++|+++|.|+|+|+|. +++|+|++|||+|+ +.+++|++|+++++|.+++|+|||+|++.+.
T Consensus 454 ~~~ig~~l~~AiGaala~---------------~~~vv~i~GDGsf~--~~~~eL~ta~~~~lp~~ivv~NN~~~~i~~~ 516 (604)
T 2x7j_A 454 ANGIDGVVSSAMGVCEGT---------------KAPVTLVIGDLSFY--HDLNGLLAAKKLGIPLTVILVNNDGGGIFSF 516 (604)
T ss_dssp TCCSSSHHHHHHHHHHHH---------------TSCEEEEEEHHHHH--HTGGGGHHHHHHCCCEEEEEEECSSCGGGGG
T ss_pred cCCcCcHHHHHHHHHhcC---------------CCcEEEEEccHHHH--hHHHHHHHhhhcCCCeEEEEEeCCCCccccc
Confidence 468999999999999985 46899999999999 6688999999999999999999999998653
Q ss_pred ccc-------------cChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeecccc
Q 006816 182 TSL-------------VLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRER 239 (630)
Q Consensus 182 ~~~-------------~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~~ 239 (630)
... ....|+.+++++||+++++| + +.+++.++++++.+ .++|++|+|.|.+..
T Consensus 517 ~~~~q~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v---~-~~~el~~al~~a~~-~~gp~liev~~~~~~ 582 (604)
T 2x7j_A 517 LPQASEKTHFEDLFGTPTGLDFKHAAALYGGTYSCP---A-SWDEFKTAYAPQAD-KPGLHLIEIKTDRQS 582 (604)
T ss_dssp SGGGSCHHHHHHHTTCCCCCCTHHHHHHTTCEEECC---S-SHHHHHHHCCCCCS-SCCEEEEEEECCHHH
T ss_pred CCCCccchhhHhhccCCCCCCHHHHHHHcCCeEEec---C-CHHHHHHHHHHHHh-CCCCEEEEEECCccc
Confidence 321 12358999999999999999 5 88999999998886 689999999997754
No 50
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=99.47 E-value=6.2e-14 Score=157.62 Aligned_cols=117 Identities=20% Similarity=0.236 Sum_probs=99.4
Q ss_pred cccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCC-ccc
Q 006816 101 TTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHN-TID 179 (630)
Q Consensus 101 ~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~-~i~ 179 (630)
..|+||+++|+|+|++++. +++|+|++|||+|+ +.+++|.+|+++++|.+++|+|||+| ++.
T Consensus 419 ~~g~~G~~l~~AiGaa~a~---------------~~~vv~i~GDGsf~--~~~~el~ta~~~~l~~~ivv~NN~~~~~~~ 481 (564)
T 2q28_A 419 TWGVMGIGMGYAIGASVTS---------------GSPVVAIEGDSAFG--FSGMEIETICRYNLPVTIVIFNNGGIYRGD 481 (564)
T ss_dssp TTTCTTCHHHHHHHHHHHH---------------CSCEEEEEEHHHHH--TTGGGHHHHHHTTCCEEEEEEECSBSSCSC
T ss_pred CCCcccchHHHHHHHhhcC---------------CCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCchhHHHH
Confidence 4589999999999999972 57899999999998 77899999999999999999999984 553
Q ss_pred ccc-------c---ccChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeecccc
Q 006816 180 GPT-------S---LVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRER 239 (630)
Q Consensus 180 ~~~-------~---~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~~ 239 (630)
... . .....|+.+++++||+++++| + +.+++.++++++.+ .++|++|++.|.+..
T Consensus 482 ~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v---~-~~~el~~al~~a~~-~~~p~liev~~~~~~ 546 (564)
T 2q28_A 482 GVDLSGAGAPSPTDLLHHARYDKLMDAFRGVGYNV---T-TTDELRHALTTGIQ-SRKPTIINVVIDPAA 546 (564)
T ss_dssp CCCTTSSCCCCTTBCCTTCCGGGGGGGGTCEEEEE---C-SHHHHHHHHHHHHH-HTSCEEEEEEBCTTS
T ss_pred HHHHhccCCccccccCCCCCHHHHHHHcCCeEEEe---C-CHHHHHHHHHHHHh-CCCCEEEEEEecccc
Confidence 221 0 011468999999999999999 5 89999999999987 689999999998765
No 51
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=99.44 E-value=1.3e-13 Score=154.62 Aligned_cols=116 Identities=17% Similarity=0.122 Sum_probs=93.9
Q ss_pred cccccchhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCcccc
Q 006816 101 TTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDG 180 (630)
Q Consensus 101 ~~G~lG~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~ 180 (630)
..|.+|+ +|.|+|+++|. +++|+|++|||+|+ |.+++|++|+++++|.+++|+||++|++.+
T Consensus 415 ~~g~~G~-l~~A~Gaa~a~---------------~~~vv~i~GDGsf~--~~~~eL~ta~~~~lpv~ivv~NN~~~~~~~ 476 (556)
T 3hww_A 415 ASGIDGL-LSTAAGVQRAS---------------GKPTLAIVGDLSAL--YDLNALALLRQVSAPLVLIVVNNNGGQIFS 476 (556)
T ss_dssp SCCSSSH-HHHHHHHHHHH---------------CCCEEEEEEHHHHH--HTGGGHHHHTTCSSCEEEEEEESCC-----
T ss_pred ccccccH-HHHHHHHHhcC---------------CCcEEEEEccHHhh--hcchhhHhhcccCCCcEEEEEECCCCCccc
Confidence 4566777 99999999984 57899999999998 888999999999999889999999988765
Q ss_pred ccc------c-----cChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeecccc
Q 006816 181 PTS------L-----VLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRER 239 (630)
Q Consensus 181 ~~~------~-----~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~~ 239 (630)
... . ....|+.+++++||+++++| + +.+++.++++++++ .++|++|||.|.+..
T Consensus 477 ~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v---~-~~~~l~~al~~a~~-~~gp~liev~~~~~~ 541 (556)
T 3hww_A 477 LLPTPQSERERFYLMPQNVHFEHAAAMFELKYHRP---Q-NWQELETAFADAWR-TPTTTVIEMVVNDTD 541 (556)
T ss_dssp ------------CCCCCCCCSHHHHHHTTCEEECC---S-SHHHHHHHHHHHTT-SSSEEEEEEECCSSH
T ss_pred CCCCcchhHHHhccCCCCCCHHHHHHHcCCcEEec---C-CHHHHHHHHHHHHh-CCCCEEEEEECCccc
Confidence 321 1 12468999999999999999 5 88999999999987 789999999986543
No 52
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=99.40 E-value=2.5e-13 Score=153.02 Aligned_cols=115 Identities=18% Similarity=0.178 Sum_probs=86.9
Q ss_pred ccccc--hhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCccc
Q 006816 102 TGPLG--QGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTID 179 (630)
Q Consensus 102 ~G~lG--~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~ 179 (630)
.|.+| +++|.|+|+|+ ++++|+|++|||+|+ |.+++|++|+++++|.+++|+||++|++.
T Consensus 433 ~G~~G~~g~l~~AiGaa~----------------~~~~vv~i~GDGsf~--~~~~eL~ta~~~~l~~~ivv~NN~~~g~~ 494 (578)
T 3lq1_A 433 RGANGIDGVVSSALGASV----------------VFQPMFLLIGDLSFY--HDMNGLLMAKKYKMNLTIVIVNNDGGGIF 494 (578)
T ss_dssp CSSCCSSSHHHHHHHHTT----------------TSSSEEEEEEHHHHH--HTGGGGHHHHHTTCCEEEEEECCC-----
T ss_pred CCccccccHHHHHHHHhc----------------CCCCEEEEEchHHHH--hhHHHHHhhccCCCCeEEEEEECCcCccc
Confidence 34444 37999999963 568899999999998 88999999999999988999999999987
Q ss_pred ccc---c-c-----c----ChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEeecccc
Q 006816 180 GPT---S-L-----V----LSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRER 239 (630)
Q Consensus 180 ~~~---~-~-----~----~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~~ 239 (630)
+.. + . . ...|+.+++++||+++++| + +.+++.++++++++ .++|++||+.|.+..
T Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v---~-~~~el~~al~~a~~-~~gp~liev~~~~~~ 562 (578)
T 3lq1_A 495 SFLPQANEPKYFESLFGTSTELDFRFAAAFYDADYHEA---K-SVDELEEAIDKASY-HKGLDIIEVKTNRHE 562 (578)
T ss_dssp --------------------CCCTHHHHHHTTCEEEEC---C-SHHHHHHHHHHHTT-SSSEEEEEEC-----
T ss_pred cccccccccchhhhhccCCCCCCHHHHHHHcCCceEec---C-CHHHHHHHHHHHHh-CCCCEEEEEECCccc
Confidence 632 1 0 0 1358999999999999999 5 89999999999987 789999999987655
No 53
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=99.37 E-value=2.1e-11 Score=146.45 Aligned_cols=207 Identities=14% Similarity=0.093 Sum_probs=149.4
Q ss_pred CCccccccchHHHHHHHHHHHhcCCCCceEeeehHHHHHhhHHHHHHhcccCCCeEEEEecCCCCCCCCCCCCCChhhhH
Q 006816 365 GRNIRYGVREHAMAGISNGVALHGGGLIPFAATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQLA 444 (630)
Q Consensus 365 ~R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~~g~~G~tHq~~~d~a 444 (630)
.+.+....+|..+++++.|.|..| .|+++++-+.=+..+.+.|+..+...+|++|+.. .+.+.+..-.+|-...| .
T Consensus 54 ~~~v~~~esE~aA~~aaiGAa~aG--aR~~t~Ts~~Gl~lm~e~l~~~ag~~~P~Vi~va-~R~g~~~glsi~~~hsd-~ 129 (1231)
T 2c42_A 54 TLTIREMQSEAGAAGAVHGALAAG--ALTTTFTASQGLLLMIPNMYKISGELLPGVFHVT-ARAIAAHALSIFGDHQD-I 129 (1231)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHTT--CCEEEEECHHHHHHHHHHHHHHHHTTCCCEEEEE-ECCCCSSSBCCSCCSHH-H
T ss_pred ceEEEecCChHHHHHHHHHHHHcC--ChHhhhccHHHHHHHHHHHHHHhCCCCCEEEEEC-CCCccCCCCcCCCchhh-H
Confidence 589999999999999999999999 9999998666566777888777667999998863 33332211122323335 3
Q ss_pred HhhcCCCcEEEecCChHHHHHHHHHH----HHcCCCcEEEEEcCC-------CcccccCC--------------------
Q 006816 445 GLRAVPRLLAFRPADGNETAGSYRVA----IANRDVPSVIALSRQ-------KIAANLEG-------------------- 493 (630)
Q Consensus 445 ~l~~iP~l~v~~P~d~~e~~~~l~~a----~~~~~~P~~ir~~r~-------~~~~~~~~-------------------- 493 (630)
+....+|+.|++|++++|+..+...| .+. ..|++++...- .+ . +++
T Consensus 130 ~~ar~~G~~vl~pss~QEa~dl~~~Af~lAek~-~~PVi~~~Dg~~~sh~~~~v-e-v~~~~~~~~~~~~~~~~~~~~~~ 206 (1231)
T 2c42_A 130 YAARQTGFAMLASSSVQEAHDMALVAHLAAIES-NVPFMHFFDGFRTSHEIQKI-E-VLDYADMASLVNQKALAEFRAKS 206 (1231)
T ss_dssp HTTTTSSCEEEECCSHHHHHHHHHHHHHHHHHH-CCCEEEEEETTTTTTCEEEE-E-CCCHHHHHHTSCHHHHHHHHHHS
T ss_pred HHHhcCCcEEEECCCHHHHHHHHHHHHHHHHHc-CCCEEEEecCcccccceeee-e-cCCHHHHHhhcChhhhhhccccc
Confidence 56778999999999999999999887 555 78999987531 11 0 110
Q ss_pred -Cccccccccc------------------------------------------EEEecCCCCCCCcEEEEEeCchHHHHH
Q 006816 494 -TSADEVERGG------------------------------------------YIVSDNSSENKPEIILIGTGTELSLCE 530 (630)
Q Consensus 494 -~~~~~~~~G~------------------------------------------~~~~~~~~~G~~dvtiva~G~~v~~a~ 530 (630)
.+...++.|. +.... .++ .|++||++|++...+.
T Consensus 207 ~~p~~p~~~g~a~~~~~~~~~~e~~~~~~~~~~~~v~~~~~k~~~~~g~~y~~~e~~g--~~d-Ad~vIVa~Gs~~~~~~ 283 (1231)
T 2c42_A 207 MNPEHPHVRGTAQNPDIYFQGREAANPYYLKVPGIVAEYMQKVASLTGRSYKLFDYVG--APD-AERVIVSMGSSCETIE 283 (1231)
T ss_dssp CCTTSCCEESCBCCTTTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHSCCCCSEEEEE--CTT-CSEEEEECSTHHHHHH
T ss_pred cCCCCceecCCCcCcchhhhhHhhhhhhhHhhHHHHHHHHHHHHHHhcccccceeeec--CCC-CCEEEEEeCHHHHHHH
Confidence 0000111221 22222 224 8999999999999999
Q ss_pred HHHHHHHhcCCceEEEEcccccccCcccHHHHhccCCCCCeeEEEEecCCcccc
Q 006816 531 GTAKTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLPSRVVKRVSVEAGSSVGW 584 (630)
Q Consensus 531 ~aa~~L~~~gi~~~Vi~~~~i~pld~~~~~~~~~v~~~~~~~~v~vEe~~~~g~ 584 (630)
+|++.|+++|+++.||+++++.||+.+.+. +.+-++..++ +|+|+....|.
T Consensus 284 eAv~~L~~~G~kvgvl~lr~~rPfp~~~i~--~~l~~~~k~i-~VvE~~~~~g~ 334 (1231)
T 2c42_A 284 EVINHLAAKGEKIGLIKVRLYRPFVSEAFF--AALPASAKVI-TVLDRTKEPGA 334 (1231)
T ss_dssp HHHHHHHTTTCCEEEEEESEEESCCHHHHH--HTSCTTCCEE-EEEESSCCTTC
T ss_pred HHHHHHHhcCCceEEEEEEEeCCCCHHHHH--HHHHhcCCEE-EEEECCCCCCC
Confidence 999999999999999999999999998775 3332443455 88999865554
No 54
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=99.06 E-value=2e-10 Score=101.40 Aligned_cols=101 Identities=19% Similarity=0.279 Sum_probs=73.3
Q ss_pred CCCcEEEEEeCchHHHHHHHHHHHHhcCCceEEEEcccccccCcccHHHHhccCCCCCeeEEEEecCCcccccccccCcc
Q 006816 513 NKPEIILIGTGTELSLCEGTAKTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLPSRVVKRVSVEAGSSVGWREYVGVEG 592 (630)
Q Consensus 513 G~~dvtiva~G~~v~~a~~aa~~L~~~gi~~~Vi~~~~i~pld~~~~~~~~~v~~~~~~~~v~vEe~~~~g~~~~~~~~~ 592 (630)
| .|++||+||+++..|++|++.|+++|++++|+++++++|||.+.+. + +++...++ +|+|++...|++..+...
T Consensus 13 g-~dv~iv~~Gs~~~~a~eA~~~L~~~Gi~v~vi~~r~~~P~d~~~l~--~-~~~~~~~v-vvvE~~~~G~l~~~i~~~- 86 (118)
T 3ju3_A 13 E-ADITFVTWGSQKGPILDVIEDLKEEGISANLLYLKMFSPFPTEFVK--N-VLSSANLV-IDVESNYTAQAAQMIKLY- 86 (118)
T ss_dssp S-CSEEEEEEGGGHHHHHHHHHHHHHTTCCEEEEEECSSCSCCHHHHH--H-HHTTCSCC-CCCCCCCCCCHHHHHHHH-
T ss_pred C-CCEEEEEECccHHHHHHHHHHHHHCCCceEEEEECeEecCCHHHHH--H-HHcCCCEE-EEEECCCCCcHHHHHHHH-
Confidence 6 8999999999999999999999999999999999999999998765 2 33444356 999998644444322110
Q ss_pred eEEEe--ccCC--CCCCHHHHHHHcCCChHHHHHHHHHhhh
Q 006816 593 KVIGV--EEFG--ASGAYLDTFKKYGFTIDNVTKVARSLLS 629 (630)
Q Consensus 593 ~~~g~--d~f~--~~g~~~~l~~~~gl~~~~I~~~i~~~l~ 629 (630)
.+. ..++ ..|. -++++.|.+.++++++
T Consensus 87 --~~~~~~~~i~~~~G~--------~~~~~ei~~~i~~~~~ 117 (118)
T 3ju3_A 87 --TGIDIKNKILKYNGR--------HMTEDEILKSAKEILN 117 (118)
T ss_dssp --HCCCCCCCCCCBTTB--------CCCHHHHHHHHHHHHH
T ss_pred --cCCCceeEEeeeCCe--------eCCHHHHHHHHHHHhh
Confidence 111 1111 1121 4789999999988875
No 55
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=98.84 E-value=8e-09 Score=124.26 Aligned_cols=104 Identities=12% Similarity=0.063 Sum_probs=85.4
Q ss_pred CceEEEEEccc-ccCchhHHHHHHHhHHcCCCcEEEEEECCCCccccccccc-----------------ChhcHHHHHHh
Q 006816 135 DHRTYCIMSDG-CAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGPTSLV-----------------LSEDISARFKS 196 (630)
Q Consensus 135 ~~~v~~~~GDG-~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~~~~~-----------------~~~~~~~~~~a 196 (630)
++.|||+.||| +++ |.+++|.+|.++++|.+++|+||+.|++.+.+... ...|+.+++++
T Consensus 953 ~~~Vv~i~GDG~~~~--mg~~eL~ta~~~~~~v~iiVlnN~~yg~tg~Q~s~~t~~~~~t~~~~~g~~~~~~D~~~iA~a 1030 (1231)
T 2c42_A 953 KKSVWIFGGDGWAYD--IGYGGLDHVLASGEDVNVFVMDTEVYSNTGGQSSKATPTGAVAKFAAAGKRTGKKDLARMVMT 1030 (1231)
T ss_dssp CCEEEEEEEHHHHHT--TTHHHHHHHHHTTCSCEEEEEECSSBTTTTCBCCTTSCTTCCBBTBTTCCSSCCCCHHHHHHT
T ss_pred CCcEEEEeCcHHHHH--cchHHHHHHHHhCCCeEEEEEECHHHHhHHhhhccCCCCCceeeecccCCCCCchhHHHHHHH
Confidence 58999999999 898 77889999999999999999999999887632210 12589999999
Q ss_pred CCCeEEEEeC-CCCCHHHHHHHHHHHHhcCCCcEEEEEeecccccCc
Q 006816 197 LGWNTIMVEN-IHDNLSSFKEALMAAANETKKPTFIRVKKMRERVNW 242 (630)
Q Consensus 197 ~G~~~~~v~d-G~~d~~~l~~al~~a~~~~~~P~~i~~~t~k~~~g~ 242 (630)
||+.++..+. +. |++++.+++++|.+ .++|++|++.+..-.+|+
T Consensus 1031 ~G~~~va~~~v~~-~~~~l~~al~eAl~-~~GP~lI~v~~~c~~~~~ 1075 (1231)
T 2c42_A 1031 YGYVYVATVSMGY-SKQQFLKVLKEAES-FPGPSLVIAYATCINQGL 1075 (1231)
T ss_dssp TSSSEEEEECTTT-CHHHHHHHHHHHHH-SSSCEEEEEECCCGGGCB
T ss_pred CCCCEEEEEeccC-CHHHHHHHHHHHHh-cCCCEEEEEeecCcccCC
Confidence 9999986533 25 89999999999998 799999999965543354
No 56
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=94.60 E-value=0.096 Score=58.50 Aligned_cols=115 Identities=15% Similarity=0.029 Sum_probs=83.5
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCceEe-eehHHHHHhhHHHHHHhcccCCCeEEEEecCCCC-CCCCCCCCCChhhh
Q 006816 366 RNIRYGVREHAMAGISNGVALHGGGLIPFA-ATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIG-LGEDGPTHQPVEQL 443 (630)
Q Consensus 366 R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~-~~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~-~g~~G~tHq~~~d~ 443 (630)
|++- -.-|++++.+|.|+|... |...++ .+..+-+..++..|.++...+.|++++....... .|. | .+|.+...
T Consensus 45 ~~i~-~~~E~~Aa~~A~GyAr~t-gk~~v~~~tsGpG~~N~~~gl~~A~~~~vPll~Itg~~p~~~~g~-~-~~Q~~d~~ 120 (590)
T 1v5e_A 45 KFLQ-VKHEEVGAMAAVMQSKFG-GNLGVTVGSGGPGASHLINGLYDAAMDNIPVVAILGSRPQRELNM-D-AFQELNQN 120 (590)
T ss_dssp EEEE-CSSHHHHHHHHHHHHHTT-CCCCEEEECTTHHHHTTHHHHHHHHHHTCCEEEEEEECCGGGTTT-T-CTTCCCCH
T ss_pred eEEe-eCCHHHHHHHHHHHHHHH-CCCEEEEeCcChHHHHHHHHHHHHHhcCCCEEEEcCCCCcccCCC-C-cccccCHH
Confidence 4444 488999999999999986 233333 3577777788888888777899999986333332 232 2 46777778
Q ss_pred HHhhcCCCcEEEecCChHHHHHHHHHHHH----cCCCcEEEEEcCCC
Q 006816 444 AGLRAVPRLLAFRPADGNETAGSYRVAIA----NRDVPSVIALSRQK 486 (630)
Q Consensus 444 a~l~~iP~l~v~~P~d~~e~~~~l~~a~~----~~~~P~~ir~~r~~ 486 (630)
.+++.+-.. .+.+.++.++..+++.|++ .+.+|++| +|..-
T Consensus 121 ~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l-iP~dv 165 (590)
T 1v5e_A 121 PMYDHIAVY-NRRVAYAEQLPKLVDEAARMAIAKRGVAVLE-VPGDF 165 (590)
T ss_dssp HHHHTTCSE-EEECCSGGGHHHHHHHHHHHHHHTTSEEEEE-EETTG
T ss_pred HHHHhhccE-EEEeCCHHHHHHHHHHHHHHHhcCCCceEEE-Eccch
Confidence 999999766 6777888888777776654 34599999 99764
No 57
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=92.04 E-value=0.47 Score=52.83 Aligned_cols=115 Identities=15% Similarity=0.105 Sum_probs=83.0
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCceEe-eehHHHHHhhHHHHHHhcccCCCeEEEEecCCCC-CCCCCCCCCChhhh
Q 006816 366 RNIRYGVREHAMAGISNGVALHGGGLIPFA-ATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIG-LGEDGPTHQPVEQL 443 (630)
Q Consensus 366 R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~-~~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~-~g~~G~tHq~~~d~ 443 (630)
|++.+ .-|++++.+|.|+|... |...++ .|..+=+..++..|.++...+.||+++....... .|. | .+|.+...
T Consensus 52 ~~i~~-~~E~~Aa~~A~Gyar~t-g~p~v~~~TsGpG~~N~~~gv~~A~~~~vPll~itg~~~~~~~g~-~-~~Q~~d~~ 127 (590)
T 1ybh_A 52 RNVLP-RHEQGGVFAAEGYARSS-GKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGT-D-AFQETPIV 127 (590)
T ss_dssp EECCC-SSHHHHHHHHHHHHHHH-SSCEEEEECTTHHHHTTHHHHHHHHHHTCCEEEEEEECCGGGTTT-T-CTTCCCHH
T ss_pred cEEee-CCHHHHHHHHHHHHHHH-CCCEEEEeccCchHHHHHHHHHHHHhhCCCEEEEeCcCCccccCC-C-cccccCHH
Confidence 45543 78999999999999864 143343 3566656677788888888899999885332222 332 3 47778888
Q ss_pred HHhhcCCCcEEEecCChHHHHHHHHHHHHc----CCCcEEEEEcCC
Q 006816 444 AGLRAVPRLLAFRPADGNETAGSYRVAIAN----RDVPSVIALSRQ 485 (630)
Q Consensus 444 a~l~~iP~l~v~~P~d~~e~~~~l~~a~~~----~~~P~~ir~~r~ 485 (630)
.+++.+-.. .+...++.++..+++.|++. +++|++|-+|..
T Consensus 128 ~~~~~~~k~-~~~v~~~~~i~~~l~~A~~~a~~~~~GPV~l~iP~d 172 (590)
T 1ybh_A 128 EVTRSITKH-NYLVMDVEDIPRIIEEAFFLATSGRPGPVLVDVPKD 172 (590)
T ss_dssp HHHGGGSSE-EEECCCGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred HHHHHHhCe-EEecCCHHHHHHHHHHHHHHHhhCCCceEEEEeCcc
Confidence 999999876 45567788888888888753 468999998864
No 58
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=91.74 E-value=0.42 Score=52.97 Aligned_cols=115 Identities=15% Similarity=0.067 Sum_probs=77.3
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCceEe-eehHHHHHhhHHHHHHhcccCCCeEEEEecCCCC-CCCCCCCCCChhhh
Q 006816 366 RNIRYGVREHAMAGISNGVALHGGGLIPFA-ATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIG-LGEDGPTHQPVEQL 443 (630)
Q Consensus 366 R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~-~~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~-~g~~G~tHq~~~d~ 443 (630)
|++.+ .-|++++-+|.|+|... |...++ .|..+=+..++..|.++.+.+.||+++....... .|. ..||.+...
T Consensus 50 ~~v~~-~~E~~Aa~~A~Gyar~t-g~p~v~~~TsGpG~~N~~~~l~~A~~~~vPll~itg~~~~~~~~~--~~~Q~~d~~ 125 (566)
T 1ozh_A 50 RIIPV-RHEANAAFMAAAVGRIT-GKAGVALVTSGPGCSNLITGMATANSEGDPVVALGGAVKRADKAK--QVHQSMDTV 125 (566)
T ss_dssp EEEEC-SSHHHHHHHHHHHHHHH-SSCEEEEECSTHHHHTTHHHHHHHHHHTCCEEEEEEECCTTTC--------CCCHH
T ss_pred cEEEe-CCHHHHHHHHHHHHHHH-CCCEEEEEccChHHHHHHHHHHHHHhcCCCEEEEeCCCccccCCC--CcccccCHH
Confidence 55554 88999999999999864 133333 3566656677788888777899999885322222 232 347888888
Q ss_pred HHhhcCCCcEEEecCChHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 006816 444 AGLRAVPRLLAFRPADGNETAGSYRVAIA----NRDVPSVIALSRQ 485 (630)
Q Consensus 444 a~l~~iP~l~v~~P~d~~e~~~~l~~a~~----~~~~P~~ir~~r~ 485 (630)
.+++.+.-.. +...++.++...++.|++ .+.+|++|-+|..
T Consensus 126 ~~~~~~tk~~-~~v~~~~~~~~~i~~A~~~A~~~r~GPV~l~iP~d 170 (566)
T 1ozh_A 126 AMFSPVTKYA-IEVTAPDALAEVVSNAFRAAEQGRPGSAFVSLPQD 170 (566)
T ss_dssp HHHGGGCSEE-EECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred HHHHHHhheE-EEcCCHHHHHHHHHHHHHHHhcCCCCeEEEEeChh
Confidence 9999988654 455667777666666543 3469999999865
No 59
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=91.59 E-value=0.48 Score=52.78 Aligned_cols=115 Identities=13% Similarity=0.059 Sum_probs=81.7
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCce-EeeehHHHHHhhHHHHHHhcccCCCeEEEEecCCCC-CCCCCCCCCChhhh
Q 006816 366 RNIRYGVREHAMAGISNGVALHGGGLIP-FAATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIG-LGEDGPTHQPVEQL 443 (630)
Q Consensus 366 R~~~~gIaE~~~vg~a~GlA~~G~~~~p-v~~~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~-~g~~G~tHq~~~d~ 443 (630)
|++.+ .-|++++-+|-|+|... |... ++.|..+=+..++..|.++...+.||+++....... .|. |..||.++..
T Consensus 45 ~~v~~-~hE~~Aa~~A~GyAr~t-g~p~v~~~TsGpG~~N~~~gv~~A~~~~vPll~itg~~~~~~~~~-~~~~Q~~d~~ 121 (589)
T 2pgn_A 45 RVINP-ATELGGAWMVNGYNYVK-DRSAAVGAWHCVGNLLLHAAMQEARTGRIPAVHIGLNSDGRLAGR-SEAAQQVPWQ 121 (589)
T ss_dssp TCBCC-SSHHHHHHHHHHHHHHH-TSCCEEEEEEGGGGGGCHHHHHHHHHTTCCEEEEEEESCGGGTTC-TTCSSCCCGG
T ss_pred eEEEe-CcHHHHHHHHHHHHHHH-CCCEEEEEecCchHHHHHHHHHHHHhcCCCEEEEecCCcccccCC-CCcccccChh
Confidence 55554 89999999999999865 1322 334677777788888888888999999885332222 232 2168888888
Q ss_pred HHhhcCCCcEEEecCChHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 006816 444 AGLRAVPRLLAFRPADGNETAGSYRVAIA----NRDVPSVIALSRQ 485 (630)
Q Consensus 444 a~l~~iP~l~v~~P~d~~e~~~~l~~a~~----~~~~P~~ir~~r~ 485 (630)
+ ++.+--.. +...++.++...++.|++ .+.+|++|-+|..
T Consensus 122 ~-~~~~tk~~-~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 165 (589)
T 2pgn_A 122 S-FTPIARST-QRVERLDKVGEAIHEAFRVAEGHPAGPAYVDIPFD 165 (589)
T ss_dssp G-GTTTSSEE-EECCSGGGHHHHHHHHHHHHTSSSCCEEEEEEETH
T ss_pred h-ccccEEEE-eecCCHHHHHHHHHHHHHHHhcCCCccEEEEeCHh
Confidence 8 88887654 445667777777776654 3458999999875
No 60
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=91.48 E-value=0.47 Score=52.65 Aligned_cols=116 Identities=18% Similarity=0.084 Sum_probs=82.4
Q ss_pred CCccccccchHHHHHHHHHHHhcCCCCceEe--eehHHHHHhhHHHHHHhcccCCCeEEEEecCCCC-CCCCCCCCCChh
Q 006816 365 GRNIRYGVREHAMAGISNGVALHGGGLIPFA--ATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIG-LGEDGPTHQPVE 441 (630)
Q Consensus 365 ~R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~--~~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~-~g~~G~tHq~~~ 441 (630)
=|++. ..-|++++-+|-|+|... -+|.+ .|..+=+..++..|.++.+.+.|++++....... .|. +..||.+.
T Consensus 49 i~~i~-~~~E~~Aa~~A~Gyar~t--g~p~v~~~TsGpG~~N~~~~v~~A~~~~~Pll~itg~~~~~~~~~-~~~~Q~~d 124 (573)
T 2iht_A 49 IDFVL-TRHEFTAGVAADVLARIT--GRPQACWATLGPGMTNLSTGIATSVLDRSPVIALAAQSESHDIFP-NDTHQCLD 124 (573)
T ss_dssp CEEEE-CSSHHHHHHHHHHHHHHH--CSCEEEEECTTHHHHHHHHHHHHHHHHTCCEEEEEEESCGGGCCT-TTSTTCCC
T ss_pred CeEEe-eCCHHHHHHHHHHHHHHH--CCCEEEEEccCchHHHHHHHHHHHHhhCCCEEEEcccCcccccCC-cCccccCC
Confidence 34444 489999999999999875 44433 3566666677888888888899999885333222 232 13588888
Q ss_pred hhHHhhcCCCcEEEecCChHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 006816 442 QLAGLRAVPRLLAFRPADGNETAGSYRVAIA----NRDVPSVIALSRQ 485 (630)
Q Consensus 442 d~a~l~~iP~l~v~~P~d~~e~~~~l~~a~~----~~~~P~~ir~~r~ 485 (630)
...+++.+--.. +...++.++...++.|++ .+.+|++|-+|..
T Consensus 125 ~~~~~~~~~k~~-~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 171 (573)
T 2iht_A 125 SVAIVAPMSKYA-VELQRPHEITDLVDSAVNAAMTEPVGPSFISLPVD 171 (573)
T ss_dssp HHHHHGGGSSEE-EECCSGGGHHHHHHHHHHHHTBSSCCCEEEEEEHH
T ss_pred HHHHHHhHhhEE-EEcCCHHHHHHHHHHHHHHHhcCCCceEEEEecch
Confidence 899999988654 445567777777777664 3458999998864
No 61
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=91.34 E-value=0.7 Score=52.38 Aligned_cols=114 Identities=11% Similarity=0.056 Sum_probs=82.2
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCceEe-eehHHHHHhhHHHHHHhcccCCCeEEEEecCCCC-CCCCCCCCCChhhh
Q 006816 366 RNIRYGVREHAMAGISNGVALHGGGLIPFA-ATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIG-LGEDGPTHQPVEQL 443 (630)
Q Consensus 366 R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~-~~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~-~g~~G~tHq~~~d~ 443 (630)
|++-+ .-|++++.+|-|+|..- |...++ .|..+=+..++..|.++...+.||+++....... .|. ..+|.++..
T Consensus 122 ~~v~~-~hE~~Aa~aAdGyAr~t-Gkpgvv~~TsGpG~~N~~~gia~A~~d~vPllvItG~~~~~~~g~--~a~Q~~Dq~ 197 (677)
T 1t9b_A 122 NFVLP-KHEQGAGHMAEGYARAS-GKPGVVLVTSGPGATNVVTPMADAFADGIPMVVFTGQVPTSAIGT--DAFQEADVV 197 (677)
T ss_dssp EEECC-SSHHHHHHHHHHHHHHH-SSCEEEEECSTHHHHTTHHHHHHHHHHTCCEEEEEEECCTTTTTS--CCTTCCCHH
T ss_pred eEEEe-CChHHHHHHHHHHHHHH-CCCEEEEECCChHHHHHHHHHHHHHHcCCCEEEEeCCCChhhcCC--CCccccCHH
Confidence 56554 89999999999999864 243343 3566666677888888878899999885322222 232 246778888
Q ss_pred HHhhcCCCcEEEecCChHHHHHHHHHHHH----cCCCcEEEEEcC
Q 006816 444 AGLRAVPRLLAFRPADGNETAGSYRVAIA----NRDVPSVIALSR 484 (630)
Q Consensus 444 a~l~~iP~l~v~~P~d~~e~~~~l~~a~~----~~~~P~~ir~~r 484 (630)
.+++.+--..+. ..++.++...++.|++ .+.+||+|-+|+
T Consensus 198 ~i~~~~tk~~~~-v~~~~~i~~~i~~A~~~A~~grpGPV~l~lP~ 241 (677)
T 1t9b_A 198 GISRSCTKWNVM-VKSVEELPLRINEAFEIATSGRPGPVLVDLPK 241 (677)
T ss_dssp HHTGGGSSEEEE-CCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEH
T ss_pred HHhhhheeEEEE-cCCHHHHHHHHHHHHHHHhhCCCceEEEEcCH
Confidence 999988776544 4578888888888776 247999999884
No 62
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=91.29 E-value=0.63 Score=51.49 Aligned_cols=116 Identities=18% Similarity=0.097 Sum_probs=81.4
Q ss_pred CCccccccchHHHHHHHHHHHhcCCCCceEe-eehHHHHHhhHHHHHHhcccCCCeEEEEecCCCC-CCCCCCCCCC-hh
Q 006816 365 GRNIRYGVREHAMAGISNGVALHGGGLIPFA-ATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIG-LGEDGPTHQP-VE 441 (630)
Q Consensus 365 ~R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~-~~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~-~g~~G~tHq~-~~ 441 (630)
=|++.+ .-|++++.+|.|+|... |...++ .|..+=+..++..|.++-..+.||+++....... .|. | .||. ++
T Consensus 42 i~~i~~-~~E~~Aa~~A~Gyar~t-g~p~v~~~TsGpG~~N~~~~l~~A~~~~~Pll~itg~~~~~~~~~-~-~~Q~~~d 117 (563)
T 2uz1_A 42 VPIIDT-RHEAAAGHAAEGYARAG-AKLGVALVTAGGGFTNAVTPIANAWLDRTPVLFLTGSGALRDDET-N-TLQAGID 117 (563)
T ss_dssp CCEEEC-SSHHHHHHHHHHHHHHH-TSCEEEEECTTHHHHTTHHHHHHHHHHTCCEEEEEEECCGGGTTS-C-CTTCCCC
T ss_pred CcEEee-CCHHHHHHHHHHHHHHh-CCCEEEEEccCccHHHHHHHHHHHHhcCCCEEEEeCCCCcccCCc-h-hhhhhcc
Confidence 455554 88999999999999874 133333 3566656677888888777899999885333332 332 3 4787 88
Q ss_pred hhHHhhcCCCcEEEecCChHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 006816 442 QLAGLRAVPRLLAFRPADGNETAGSYRVAIA----NRDVPSVIALSRQ 485 (630)
Q Consensus 442 d~a~l~~iP~l~v~~P~d~~e~~~~l~~a~~----~~~~P~~ir~~r~ 485 (630)
...+++.+--. .+...++.++..+++.|++ .+.+|++|-+|..
T Consensus 118 ~~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~d 164 (563)
T 2uz1_A 118 QVAMAAPITKW-AHRVMATEHIPRLVMQAIRAALSAPRGPVLLDLPWD 164 (563)
T ss_dssp HHHHHGGGCSE-EEECCCGGGHHHHHHHHHHHHHSSSCCCEEEEEEHH
T ss_pred HHHHhhhhhce-EEEcCCHHHHHHHHHHHHHHhcCCCCceEEEEeCHH
Confidence 88999998765 4455677777777766654 3469999999875
No 63
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=90.74 E-value=0.74 Score=50.42 Aligned_cols=117 Identities=17% Similarity=0.187 Sum_probs=77.0
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCceEee-ehHHHHHhhHHHHHHhcccCCCeEEEEecCCCC-CCCCCCCCCChhhh
Q 006816 366 RNIRYGVREHAMAGISNGVALHGGGLIPFAA-TFLIFSDYMKNSIRLSALSHAGVIYILTHDSIG-LGEDGPTHQPVEQL 443 (630)
Q Consensus 366 R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~-~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~-~g~~G~tHq~~~d~ 443 (630)
|++. ..-|++++.+|.|+|... |...++. +..+=+..++..|.++...+.||+++....... .|. |+.++.++..
T Consensus 40 ~~i~-~~~E~~Aa~~A~Gyar~t-g~~~v~~~tsGpG~~N~~~~l~~A~~~~~Pll~itg~~~~~~~~~-~~~q~~~d~~ 116 (528)
T 1q6z_A 40 RYIL-ALQEACVVGIADGYAQAS-RKPAFINLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGV-EALLTNVDAA 116 (528)
T ss_dssp EEEE-CSSHHHHHHHHHHHHHHH-TSCEEEEEEHHHHHHHTHHHHHHHHHTTCCEEEEEEECCHHHHTT-TCTTCCTTGG
T ss_pred cEEE-ECcHHHHHHHHHHHHHHh-CCCEEEEEcCChHHHHHHHHHHHHhhcCCCEEEEeCCCcccccCC-CcccccccHH
Confidence 4554 478999999999999974 1444443 454545667788888778899999885322222 343 3322225777
Q ss_pred HHhhcCCCcEEEecCChHHHHHHHHHHH----HcCCCcEEEEEcCCC
Q 006816 444 AGLRAVPRLLAFRPADGNETAGSYRVAI----ANRDVPSVIALSRQK 486 (630)
Q Consensus 444 a~l~~iP~l~v~~P~d~~e~~~~l~~a~----~~~~~P~~ir~~r~~ 486 (630)
.+++.+-... +.+.++.++...++.|+ ..+.+|++|-+|...
T Consensus 117 ~~~~~~~k~~-~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d~ 162 (528)
T 1q6z_A 117 NLPRPLVKWS-YEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDD 162 (528)
T ss_dssp GSSTTSCSCE-ECCSSGGGHHHHHHHHHHHHHSSSCCCEEEEEEGGG
T ss_pred HHHHHhhHhh-hcCCCHHHHHHHHHHHHHHHhcCCCCcEEEEechhh
Confidence 8888887654 44455666655555554 345689999998753
No 64
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=90.42 E-value=0.89 Score=46.90 Aligned_cols=101 Identities=13% Similarity=0.022 Sum_probs=66.8
Q ss_pred hhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEE-EcccccCchhHHHHHHHhHH---------cCCCcEEEEEECCCC
Q 006816 107 QGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCI-MSDGCAMEGISHEAAALAAH---------WKLNKLTLIYDDNHN 176 (630)
Q Consensus 107 ~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~-~GDG~~~eG~~~eal~~a~~---------~~L~~li~i~~~N~~ 176 (630)
..++.|.|+|++. -+.++++ .+|.. + ..++.+...+- .++| +++++.....
T Consensus 73 ~~v~~a~G~A~~G---------------~rp~~~~~f~~F~-~--~a~dqi~~~~a~~~y~~~g~~~~p-vv~~~~~G~~ 133 (341)
T 2ozl_B 73 GFAGIAVGAAMAG---------------LRPICEFMTFNFS-M--QAIDQVINSAAKTYYMSGGLQPVP-IVFRGPNGAS 133 (341)
T ss_dssp HHHHHHHHHHHTT---------------CEEEEECSSGGGG-G--GGHHHHHTTTTTHHHHTTSSCCCC-CEEEEECSCC
T ss_pred HHHHHHHHHHHCC---------------CEEEEEeccHHHH-H--HHHHHHHHHHHHHHhhccccCCCC-EEEEEcCcCC
Confidence 4566788887753 2345543 77777 3 67787765442 7888 5566665333
Q ss_pred cccccccccChhcHHHHHHhC-CCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEe
Q 006816 177 TIDGPTSLVLSEDISARFKSL-GWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVK 234 (630)
Q Consensus 177 ~i~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~ 234 (630)
+-++++..... + ..++.. ||.++.+ . |..+...+++.|.+ .++|++|...
T Consensus 134 g~~G~tHs~~~-e--a~l~~iP~l~V~~P---s-d~~e~~~~l~~a~~-~~~Pv~i~~~ 184 (341)
T 2ozl_B 134 AGVAAQHSQCF-A--AWYGHCPGLKVVSP---W-NSEDAKGLIKSAIR-DNNPVVVLEN 184 (341)
T ss_dssp SSCCGGGCCCC-H--HHHHTSTTCEEECC---C-SHHHHHHHHHHHHH-SSSCEEEEEC
T ss_pred CCCCcchhhHH-H--HHhccCCCCEEEEe---C-CHHHHHHHHHHHHh-cCCCEEEEEC
Confidence 33444442222 2 566666 9999988 5 99999999999887 6899988654
No 65
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=90.39 E-value=1.1 Score=50.07 Aligned_cols=114 Identities=13% Similarity=0.058 Sum_probs=81.7
Q ss_pred CccccccchHHHHHHHHHHHhc-CCCCceEe--eehHHHHHhhHHHHHHhcccCCCeEEEEecCCCC-CCCCCCCCCChh
Q 006816 366 RNIRYGVREHAMAGISNGVALH-GGGLIPFA--ATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIG-LGEDGPTHQPVE 441 (630)
Q Consensus 366 R~~~~gIaE~~~vg~a~GlA~~-G~~~~pv~--~~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~-~g~~G~tHq~~~ 441 (630)
|++- ..-|++++.+|.|+|.. | -+|.+ .|..+=+.-++..|.++.+.+.|++++....... .+. | .+|.+.
T Consensus 67 ~~i~-~~~E~~Aa~~A~GyAr~tg--g~~~v~~~TsGpG~~N~~~~l~~A~~~~vPlvvItg~~p~~~~~~-~-~~Q~~d 141 (616)
T 2pan_A 67 RHIL-ARHVEGASHMAEGYTRATA--GNIGVCLGTSGPAGTDMITALYSASADSIPILCITGQAPRARLHK-E-DFQAVD 141 (616)
T ss_dssp EEEE-CSSHHHHHHHHHHHHHHST--TCCEEEEECSTHHHHTSHHHHHHHHHTTCCEEEEEEECCGGGTTT-T-CTTCCC
T ss_pred cEEe-eCCHHHHHHHHHHHHHhcC--CCceEEEeCCCchHHHHHHHHHHHHhcCCCEEEEecCCcccccCc-c-cccccC
Confidence 4443 48899999999999986 4 34433 4566666677888888888899999885333222 232 3 367677
Q ss_pred hhHHhhcCCCcEEEecCChHHHHHHHHHHHHc----CCCcEEEEEcCC
Q 006816 442 QLAGLRAVPRLLAFRPADGNETAGSYRVAIAN----RDVPSVIALSRQ 485 (630)
Q Consensus 442 d~a~l~~iP~l~v~~P~d~~e~~~~l~~a~~~----~~~P~~ir~~r~ 485 (630)
...+++.+--... ...++.++..+++.|++. +.+|++|-+|..
T Consensus 142 ~~~~~~~~tk~~~-~v~~~~~i~~~l~~A~~~A~~~r~GPV~l~iP~d 188 (616)
T 2pan_A 142 IEAIAKPVSKMAV-TVREAALVPRVLQQAFHLMRSGRPGPVLVDLPFD 188 (616)
T ss_dssp HHHHHGGGSSEEE-ECCSGGGHHHHHHHHHHHHHSSSCCCEEEEEEHH
T ss_pred HHHHHHHHHHhhc-ccCCHHHHHHHHHHHHHHHhcCCCceEEEEcchh
Confidence 7889998887655 446688888888887753 468999988764
No 66
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=89.88 E-value=1.5 Score=48.37 Aligned_cols=117 Identities=13% Similarity=0.054 Sum_probs=76.3
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCceEeeehHHHHHhhHHHHHHhcccCCCeEEEEecCCCC-CCCCCCCCCCh----
Q 006816 366 RNIRYGVREHAMAGISNGVALHGGGLIPFAATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIG-LGEDGPTHQPV---- 440 (630)
Q Consensus 366 R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~-~g~~G~tHq~~---- 440 (630)
|++.+ .-|++++.+|.|+|... |.-.++.|..+=+..++..|.++...+.||+++....... .+.+...||.+
T Consensus 43 ~~i~~-~~E~~Aa~~A~Gyar~t-g~~v~~~TsGpG~~N~~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~ 120 (568)
T 2wvg_A 43 EQVYC-CNELNCGFSAEGYARAK-GAAAAVVTYSVGALSAFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTD 120 (568)
T ss_dssp EEEEC-SSHHHHHHHHHHHHHHH-SCEEEEECTTTTHHHHHHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSC
T ss_pred eEecc-CcHHHHHHHHHHHHHhh-CCeEEEEeCCCCHHHHHHHHHHHhhhCCCEEEEeCCCChhHhccCcceeeeccccc
Confidence 56554 89999999999999875 4222223555545567777777778899999886333332 34333345532
Q ss_pred --hhhHHhhcCCCcEEEecCChHHHHHHH----HHHHHcCCCcEEEEEcCCC
Q 006816 441 --EQLAGLRAVPRLLAFRPADGNETAGSY----RVAIANRDVPSVIALSRQK 486 (630)
Q Consensus 441 --~d~a~l~~iP~l~v~~P~d~~e~~~~l----~~a~~~~~~P~~ir~~r~~ 486 (630)
....+++.+--.. +.+.++.++...+ +.|... .+|++|-+|...
T Consensus 121 ~~d~~~~~~~~tk~~-~~v~~~~~~~~~l~~A~~~A~~~-~GPV~l~iP~dv 170 (568)
T 2wvg_A 121 YHYQLEMAKNITAAA-EAIYTPEEAPAKIDHVIKTALRE-KKPVYLEIACNI 170 (568)
T ss_dssp CCHHHHHHTTSCSCE-EEECSGGGHHHHHHHHHHHHHHH-TCCEEEEEEGGG
T ss_pred hHHHHHHHHhhEeEE-EEeCCHHHHHHHHHHHHHHHHhC-CCCEEEEechhH
Confidence 4578999887764 4445565555544 445555 599999998753
No 67
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=89.78 E-value=0.66 Score=51.82 Aligned_cols=116 Identities=10% Similarity=0.014 Sum_probs=78.0
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCceEe--eehHHHHHhhHHHHHHhcccCCCeEEEEecCCCC-CCCCCCCCCChhh
Q 006816 366 RNIRYGVREHAMAGISNGVALHGGGLIPFA--ATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIG-LGEDGPTHQPVEQ 442 (630)
Q Consensus 366 R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~--~~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~-~g~~G~tHq~~~d 442 (630)
|++.+ .-|++++-+|-|+|... -+|.+ .|..+=+..++..|.++-..+.||+++....... .|. | .+|.+..
T Consensus 71 ~~i~~-~hE~~Aa~aA~GyAr~t--gkpgv~~~TsGpG~~N~~~gia~A~~~~vPlv~ItG~~~~~~~g~-~-~~Q~~d~ 145 (604)
T 2x7j_A 71 SVHVQ-IDERSAGFFALGLAKAK--QRPVLLICTSGTAAANFYPAVVEAHYSRVPIIVLTADRPHELREV-G-APQAINQ 145 (604)
T ss_dssp EEEEC-SSHHHHHHHHHHHHHHH--TSCEEEEECSSHHHHTTHHHHHHHHHHTCCEEEEEEECCGGGSSS-C-CTTCCCC
T ss_pred eEEEe-cChHHHHHHHHHHHHhh--CCCEEEEECChhHHHHHHHHHHHHhhcCCCEEEEeCCCCHHHhCC-C-CCCcCcH
Confidence 55555 88999999999999865 34433 3566666677788888778899999885322222 333 2 4777888
Q ss_pred hHHhhcCCCcEEEec--CC--------hHHHHHHHHHHHHcCCCcEEEEEcCCC
Q 006816 443 LAGLRAVPRLLAFRP--AD--------GNETAGSYRVAIANRDVPSVIALSRQK 486 (630)
Q Consensus 443 ~a~l~~iP~l~v~~P--~d--------~~e~~~~l~~a~~~~~~P~~ir~~r~~ 486 (630)
..+++.+--.....+ .+ +..+..+++.|...+++|++|-+|...
T Consensus 146 ~~~~~~~tk~~~~v~~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d~ 199 (604)
T 2x7j_A 146 HFLFGNFVKFFTDSALPEESPQMLRYIRTLASRAAGEAQKRPMGPVHVNVPLRE 199 (604)
T ss_dssp TTTTGGGSSCEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCEEEEEEECCS
T ss_pred HHHhhhheeeeeecCCCcccchhHHHHHHHHHHHHHHhhCCCCCcEEEEcccCc
Confidence 889998877655443 33 223444455455435799999999753
No 68
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=89.42 E-value=0.89 Score=50.17 Aligned_cols=116 Identities=11% Similarity=0.021 Sum_probs=81.6
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCceEe-eehHHHHHhhHHHHHHhcccCCCeEEEEecCCCC-CCCCCCCCCChhhh
Q 006816 366 RNIRYGVREHAMAGISNGVALHGGGLIPFA-ATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIG-LGEDGPTHQPVEQL 443 (630)
Q Consensus 366 R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~-~~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~-~g~~G~tHq~~~d~ 443 (630)
|++- -.-|++++-+|-|+|..- |...++ .|..+=...++..|.++...+.||+++....... .|. | .||.+...
T Consensus 48 ~~i~-~~hE~~Aa~~AdGyAr~t-G~pgv~~~TsGpG~~N~~~gia~A~~d~vPll~itG~~~~~~~g~-~-~~Q~~d~~ 123 (556)
T 3hww_A 48 IHHT-HFDERGLGHLALGLAKVS-KQPVAVIVTSGTAVANLYPALIEAGLTGEKLILLTADRPPELIDC-G-ANQAIRQP 123 (556)
T ss_dssp EEEE-CSCHHHHHHHHHHHHHHH-CSCEEEEECSSHHHHTTHHHHHHHHHHCCCEEEEEEECCGGGSSS-S-CTTCCCCT
T ss_pred eEEE-ecCCcHHHHHHHHHHHhh-CCCEEEEECCCcHHHhhhHHHHHHHHhCCCeEEEeCCCCHHHhcc-C-CCccccHH
Confidence 4444 467999999999999854 133333 3566656677788888788899999885322222 343 3 48888888
Q ss_pred HHhhcCCCcEEEecCC-----hHHHHHHHHHHHHc-CCCcEEEEEcCC
Q 006816 444 AGLRAVPRLLAFRPAD-----GNETAGSYRVAIAN-RDVPSVIALSRQ 485 (630)
Q Consensus 444 a~l~~iP~l~v~~P~d-----~~e~~~~l~~a~~~-~~~P~~ir~~r~ 485 (630)
.+++.+--...-.+.- +.++..+++.|+.. +++|++|-+|..
T Consensus 124 ~~~~~~tk~~~~v~~~~~~~~~~~i~~~i~~A~~~~r~GPV~i~iP~d 171 (556)
T 3hww_A 124 GMFASHPTHSISLPRPTQDIPARWLVSTIDHALGTLHAGGVHINCPFA 171 (556)
T ss_dssp TTTTTCSSEEEECCCCCTTSCHHHHHHHHHHHHHSCCSSCEEEEEECC
T ss_pred HHHhhheeEEEecCCCcccccHHHHHHHHHHHHhcCCCCCEEEeCCcC
Confidence 8999888766555432 34688899999863 468999999974
No 69
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=88.90 E-value=1.8 Score=47.71 Aligned_cols=119 Identities=16% Similarity=0.042 Sum_probs=74.4
Q ss_pred CCCccccccchHHHHHHHHHHHhcCCCCceEe-eehHHHHHhhHHHHHHhcccCCCeEEEEecCCCC-CCCCCCC-CCC-
Q 006816 364 WGRNIRYGVREHAMAGISNGVALHGGGLIPFA-ATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIG-LGEDGPT-HQP- 439 (630)
Q Consensus 364 p~R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~-~~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~-~g~~G~t-Hq~- 439 (630)
+.+.+=...-|++++-+|.|+|... |...++ .|..+=+.-++..|.++.+.+.||+++....... .|.+... ||.
T Consensus 58 ~~~~~i~~~~E~~Aa~~A~GyAr~t-gkp~v~~~TsGpG~~N~~~gv~~A~~~~vPll~itg~~~~~~~~~~~~~~~~~q 136 (565)
T 2nxw_A 58 QILPLHTLSHEPAVGFAADAAARYS-STLGVAAVTYGAGAFNMVNAVAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGR 136 (565)
T ss_dssp CSSCEEECSSHHHHHHHHHHHHHHH-TSCEEEEECTTHHHHTTHHHHHHHHHTTCCEEEEEEECCTTCC--CCCC-----
T ss_pred CCcEEEecCcHHHHHHHHHHHHHHh-CCCeEEEECCCCCHHHHHHHHHHHHhhCCCEEEEeCCCChhhhccCcceeeecc
Confidence 3334455689999999999999864 133333 3566656677788888778899999886333222 4443333 433
Q ss_pred -hh-hhHHhhcCCCcEEEecCChHH----HHHHHHHHHHcCCCcEEEEEcCC
Q 006816 440 -VE-QLAGLRAVPRLLAFRPADGNE----TAGSYRVAIANRDVPSVIALSRQ 485 (630)
Q Consensus 440 -~~-d~a~l~~iP~l~v~~P~d~~e----~~~~l~~a~~~~~~P~~ir~~r~ 485 (630)
+. ...+++.+--..... .++.+ +..+++.|... .+|++|-+|+.
T Consensus 137 ~~d~q~~~~~~~~k~~~~v-~~~~~~~~~i~~A~~~A~~~-~GPV~l~iP~D 186 (565)
T 2nxw_A 137 TLDTQFQVFKEITVAQARL-DDPAKAPAEIARVLGAARAQ-SRPVYLEIPRN 186 (565)
T ss_dssp --CHHHHHHTTSCSCEEEC-CCTTTHHHHHHHHHHHHHHH-TCCEEEEEEGG
T ss_pred chhhHHHHHHhhheEEEEe-CCHHHHHHHHHHHHHHHHhC-CCCEEEECChh
Confidence 33 578899887654443 34444 44455555555 69999999964
No 70
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=88.82 E-value=1.6 Score=48.11 Aligned_cols=114 Identities=16% Similarity=0.088 Sum_probs=77.2
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCceEe-eehHHHHHhhHHHHHHhcccCCCeEEEEecCCCC-CCCCCCCCCChhhh
Q 006816 366 RNIRYGVREHAMAGISNGVALHGGGLIPFA-ATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIG-LGEDGPTHQPVEQL 443 (630)
Q Consensus 366 R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~-~~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~-~g~~G~tHq~~~d~ 443 (630)
|++.+ .-|++++-+|-|+|... |...++ .|+.+=+..++..|.++...+.||+++....... .|. | .+|.+...
T Consensus 43 ~~i~~-~~E~~Aa~~A~GyAr~t-g~~~v~~~TsGpG~~N~~~gi~~A~~~~vPvl~itg~~~~~~~~~-~-~~Q~~d~~ 118 (549)
T 3eya_A 43 EWMST-RHEEVAAFAAGAEAQLS-GELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIGS-G-YFQETHPQ 118 (549)
T ss_dssp EEEEC-SSHHHHHHHHHHHHHHH-SSCEEEEECTTHHHHTTHHHHHHHHHTTCCEEEEEEESCGGGTTS-C-CTTCCCHH
T ss_pred eEEEe-CChHHHHHHHHHHHHHh-CCCEEEEeCCCCcHhhhHHHHHHHHhhCCCEEEEeCCCchhhcCC-C-CCCccCHH
Confidence 45543 78999999999999864 133333 3566656677788888888899999885322222 332 2 46777888
Q ss_pred HHhhcCCCcEEEecCChHHHHHHHHHH----HHcCCCcEEEEEcCC
Q 006816 444 AGLRAVPRLLAFRPADGNETAGSYRVA----IANRDVPSVIALSRQ 485 (630)
Q Consensus 444 a~l~~iP~l~v~~P~d~~e~~~~l~~a----~~~~~~P~~ir~~r~ 485 (630)
.+++.+-.... ...++.++...++.| ... .+|++|-+|..
T Consensus 119 ~~~~~~tk~~~-~v~~~~~~~~~i~~A~~~A~~~-~GPV~l~iP~d 162 (549)
T 3eya_A 119 ELFRECSHYCE-LVSSPEQIPQVLAIAMRKAVLN-RGVSVVVLPGD 162 (549)
T ss_dssp HHTSTTCSEEE-ECCSGGGHHHHHHHHHHHHHHT-TSEEEEEEEHH
T ss_pred HHHhhhhheEE-EeCCHHHHHHHHHHHHHHHhhC-CCCEEEEeChh
Confidence 99998876443 445666666655554 444 79999998864
No 71
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=88.73 E-value=2 Score=43.79 Aligned_cols=100 Identities=18% Similarity=0.139 Sum_probs=65.8
Q ss_pred hhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEE-EcccccCchhHHHHHHH-hHH--------cCCCcEEEEEECCCC
Q 006816 107 QGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCI-MSDGCAMEGISHEAAAL-AAH--------WKLNKLTLIYDDNHN 176 (630)
Q Consensus 107 ~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~-~GDG~~~eG~~~eal~~-a~~--------~~L~~li~i~~~N~~ 176 (630)
..++.|.|+|++. -+.++++ .++.. + ..++.+.. ++. .++| +++++. .+.
T Consensus 62 ~~v~~a~G~A~~G---------------~~p~~~~t~~~F~-~--~a~dqi~~~~a~~~~~~~g~~~~p-vv~~~~-~g~ 121 (324)
T 1umd_B 62 AIVGAALGMAAHG---------------LRPVAEIQFADYI-F--PGFDQLVSQVAKLRYRSGGQFTAP-LVVRMP-SGG 121 (324)
T ss_dssp HHHHHHHHHHHHT---------------CEEEEECSSGGGC-G--GGHHHHHHTTTTHHHHTTTSSCCC-CEEEEE-ECS
T ss_pred HHHHHHHHHHHCC---------------CEEEEEeccHhHH-H--HHHHHHHHHHHHHHhhcCCCCcCC-EEEEEc-CCC
Confidence 3556788887754 2445544 77875 4 67777754 332 6888 555555 344
Q ss_pred cccccccccChhcHHHHHHhC-CCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEE
Q 006816 177 TIDGPTSLVLSEDISARFKSL-GWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRV 233 (630)
Q Consensus 177 ~i~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~ 233 (630)
...+...... .+. .+++.. ||.++.. . |..+....++.+.+ .++|++|.-
T Consensus 122 ~~~~g~~hs~-~~~-a~~~~iP~~~V~~P---~-d~~e~~~~l~~a~~-~~~Pv~i~~ 172 (324)
T 1umd_B 122 GVRGGHHHSQ-SPE-AHFVHTAGLKVVAV---S-TPYDAKGLLKAAIR-DEDPVVFLE 172 (324)
T ss_dssp SSSCGGGSSC-CCH-HHHHTSTTCEEEEC---C-SHHHHHHHHHHHHH-CSSCEEEEE
T ss_pred CCCCCCccch-hHH-HHHhcCCCCEEEEe---C-CHHHHHHHHHHHHh-cCCCEEEEe
Confidence 3333332222 444 677776 9999998 5 99999999998887 689998854
No 72
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=88.70 E-value=1.8 Score=48.20 Aligned_cols=115 Identities=14% Similarity=0.030 Sum_probs=76.4
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCceEe-eehHHHHHhhHHHHHHhcccCCCeEEEEecCCCC-CCCCCCCCCChhhh
Q 006816 366 RNIRYGVREHAMAGISNGVALHGGGLIPFA-ATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIG-LGEDGPTHQPVEQL 443 (630)
Q Consensus 366 R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~-~~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~-~g~~G~tHq~~~d~ 443 (630)
|++.+ .-|++++-+|-|+|..- |...++ .|+.+=+..++..|.++...+.||+++....... .|. ..+|.+...
T Consensus 52 ~~i~~-~hE~~Aa~aA~GyAr~t-g~~gv~~~TsGpG~~N~~~gia~A~~~~vPvl~itG~~~~~~~~~--~~~Q~~d~~ 127 (603)
T 4feg_A 52 HYIQV-RHEEVGAMAAAADAKLT-GKIGVCFGSAGPGGTHLMNGLYDAREDHVPVLALIGQFGTTGMNM--DTFQEMNEN 127 (603)
T ss_dssp EEEEC-SSHHHHHHHHHHHHHHH-SSCEEEEECTTHHHHTTHHHHHHHHHTTCCEEEEEEECCTTTTTS--CCTTCCCCG
T ss_pred eEEEe-cChHHHHHHHHHHHHHh-CCceEEEecCCchHHHHHHHHHHHHHcCCCEEEEecCCcccccCC--CccccccHH
Confidence 55544 78999999999999764 133333 3566656677788888888899999885322222 232 245667777
Q ss_pred HHhhcCCCcEEEecCChHHHHH----HHHHHHHcCCCcEEEEEcCCC
Q 006816 444 AGLRAVPRLLAFRPADGNETAG----SYRVAIANRDVPSVIALSRQK 486 (630)
Q Consensus 444 a~l~~iP~l~v~~P~d~~e~~~----~l~~a~~~~~~P~~ir~~r~~ 486 (630)
.+++.+--..... .++.++.. +++.|... .+|++|-+|...
T Consensus 128 ~~~~~~tk~~~~v-~~~~~~~~~i~~A~~~A~~~-~GPV~l~iP~dv 172 (603)
T 4feg_A 128 PIYADVADYNVTA-VNAATLPHVIDEAIRRAYAH-QGVAVVQIPVDL 172 (603)
T ss_dssp GGGTTTCSEEEEC-CCSTTHHHHHHHHHHHHHHH-TSEEEEEEETTG
T ss_pred HHhhhhceEEEEc-CCHHHHHHHHHHHHHHHhcC-CCCEEEEeChhh
Confidence 8888887654433 34444444 55555554 799999998753
No 73
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=88.53 E-value=2.1 Score=47.24 Aligned_cols=116 Identities=19% Similarity=0.130 Sum_probs=74.8
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCceEe-eehHHHHHhhHHHHHHhcccCCCeEEEEecCCCC-CCCCCCCCCCh---
Q 006816 366 RNIRYGVREHAMAGISNGVALHGGGLIPFA-ATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIG-LGEDGPTHQPV--- 440 (630)
Q Consensus 366 R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~-~~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~-~g~~G~tHq~~--- 440 (630)
|++. ..-|++++.+|.|+|... | ..++ .|..+=+..++..|-++...+.|++++....... .+.+-..||.+
T Consensus 43 ~~v~-~~~E~~Aa~~A~Gyar~t-g-~~v~~~TsGpG~~N~~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~ 119 (566)
T 2vbi_A 43 KQIY-CCNELNCGFSAEGYARSN-G-AAAAVVTFSVGAISAMNALGGAYAENLPVILISGAPNSNDQGTGHILHHTIGKT 119 (566)
T ss_dssp EEEE-CSSHHHHHHHHHHHHHHH-S-CEEEEECTTTTHHHHHHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSS
T ss_pred eEEe-eCcHHHHHHHHHHHHhhc-C-CeEEEEeCCCCHHHHHHHHHHHHhhCCCEEEEECCCChHHhccCceeeeeccCc
Confidence 4554 488999999999999975 4 3333 3455544567777777777899999886333332 34332345432
Q ss_pred ---hhhHHhhcCCCcEEEecCChHHH----HHHHHHHHHcCCCcEEEEEcCCC
Q 006816 441 ---EQLAGLRAVPRLLAFRPADGNET----AGSYRVAIANRDVPSVIALSRQK 486 (630)
Q Consensus 441 ---~d~a~l~~iP~l~v~~P~d~~e~----~~~l~~a~~~~~~P~~ir~~r~~ 486 (630)
....+++.+--.. +.+.++.++ ..+++.|... .+|++|-+|...
T Consensus 120 ~~~d~~~~~~~~tk~~-~~v~~~~~~~~~l~~A~~~a~~~-~GPV~l~iP~d~ 170 (566)
T 2vbi_A 120 DYSYQLEMARQVTCAA-ESITDAHSAPAKIDHVIRTALRE-RKPAYLDIACNI 170 (566)
T ss_dssp CCTHHHHHHHTTCSEE-EEECSSSSHHHHHHHHHHHHHHH-TCCEEEEEETTT
T ss_pred chHHHHHHHhhhEeEE-EEeCCHHHHHHHHHHHHHHHHhC-CCCEEEEechhh
Confidence 4578999886543 334444444 4455555555 599999999764
No 74
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=88.29 E-value=1.2 Score=45.45 Aligned_cols=101 Identities=14% Similarity=0.041 Sum_probs=65.6
Q ss_pred hhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEE-EcccccCchhHHHHHHH-hHH--------cCCCcEEEEEECCCC
Q 006816 107 QGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCI-MSDGCAMEGISHEAAAL-AAH--------WKLNKLTLIYDDNHN 176 (630)
Q Consensus 107 ~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~-~GDG~~~eG~~~eal~~-a~~--------~~L~~li~i~~~N~~ 176 (630)
..+++|.|+|++. -+.++++ .+++. + ..++.+.. ++. .++| ++++++ .+.
T Consensus 61 ~~v~~a~G~A~~G---------------~rp~~~~t~~~F~-~--~a~dqi~~~~a~~~~~~~g~~~~p-vv~~~~-~g~ 120 (324)
T 1w85_B 61 GIGGLAIGLALQG---------------FRPVPEIQFFGFV-Y--EVMDSICGQMARIRYRTGGRYHMP-ITIRSP-FGG 120 (324)
T ss_dssp HHHHHHHHHHHTT---------------CEEEEBCSSGGGG-G--GTHHHHHTTGGGHHHHTTTSSCCC-CEEEEE-ECS
T ss_pred HHHHHHHHHHhCC---------------CEEEEEecchhHH-H--HHHHHHHHHHHHHhhhccCCCcCC-EEEEEe-ccC
Confidence 4566788887753 2334444 77775 4 67777753 443 7888 555555 344
Q ss_pred cccccccccChhcHHHHHHhC-CCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEe
Q 006816 177 TIDGPTSLVLSEDISARFKSL-GWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVK 234 (630)
Q Consensus 177 ~i~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~ 234 (630)
...+...... .+. .++++. ||.++.. . |..+....++.|.+ .++|++|-..
T Consensus 121 ~~~~g~~hs~-~~~-a~~~~iP~l~V~~P---s-d~~e~~~~l~~a~~-~~~Pv~i~~p 172 (324)
T 1w85_B 121 GVHTPELHSD-SLE-GLVAQQPGLKVVIP---S-TPYDAKGLLISAIR-DNDPVIFLEH 172 (324)
T ss_dssp SSCCCTTSSC-CCH-HHHTTSTTCEEECC---S-SHHHHHHHHHHHHH-SSSCEEEEEE
T ss_pred CCCCCCcccc-cHH-HHHccCCCCEEEee---C-CHHHHHHHHHHHHH-cCCCEEEEec
Confidence 4333322222 444 667776 8999888 5 99999999998887 6899988643
No 75
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=87.85 E-value=1.2 Score=49.44 Aligned_cols=116 Identities=14% Similarity=0.068 Sum_probs=77.6
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCceEe-eehHHHHHhhHHHHHHhcccCCCeEEEEecCCCC-CCCCCCCCCChhhh
Q 006816 366 RNIRYGVREHAMAGISNGVALHGGGLIPFA-ATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIG-LGEDGPTHQPVEQL 443 (630)
Q Consensus 366 R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~-~~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~-~g~~G~tHq~~~d~ 443 (630)
|++-+ .-|++++-+|-|+|..- |...++ .|..+=+..++..|.++...+.||+++....... .|. | .+|.++..
T Consensus 51 ~~i~~-~hE~~Aa~aAdGyAr~t-G~pgv~~~TsGpG~~N~~~gia~A~~d~vPll~itG~~p~~~~g~-~-~~Qe~d~~ 126 (578)
T 3lq1_A 51 KIYVD-VDERSAGFFALGLAKAS-KRPVVLLCTSGTAAANYFPAVAEANLSQIPLIVLTADRPHELRNV-G-APQAMDQL 126 (578)
T ss_dssp EEEEC-SSHHHHHHHHHHHHHHH-CCCEEEEECSSHHHHTTHHHHHHHHHTTCCEEEEEEECCGGGTTS-S-CTTCCCCT
T ss_pred eEEEe-cCcHHHHHHHHHHHHhh-CCCEEEEECCchhhhhhhHHHHHHHhcCCCeEEEeCCCCHHhhcC-C-CCCCcCHh
Confidence 55554 68999999999999864 233333 3555555667777887788899999885322222 232 3 46777788
Q ss_pred HHhhcCCCcEEE--ecCChHH--------HHHHHHHHHHcCCCcEEEEEcCC
Q 006816 444 AGLRAVPRLLAF--RPADGNE--------TAGSYRVAIANRDVPSVIALSRQ 485 (630)
Q Consensus 444 a~l~~iP~l~v~--~P~d~~e--------~~~~l~~a~~~~~~P~~ir~~r~ 485 (630)
.+++.+--.... .|.+..+ +..+++.|...+++|++|-+|..
T Consensus 127 ~~~~~~tk~~~~v~~~~~~~~~~~~i~~~l~~A~~~A~~gr~GPV~l~iP~d 178 (578)
T 3lq1_A 127 HLYGSHVKDFTDMALPENSEEMLRYAKWHGSRAVDIAMKTPRGPVHLNFPLR 178 (578)
T ss_dssp TTTGGGSSEEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCCEEEEEECC
T ss_pred hHHhhheeeEeecCCCCCchHHHHHHHHHHHHHHHHhhCCCCCcEEEECccC
Confidence 888888765544 3555433 45555555554689999999974
No 76
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=87.44 E-value=2.9 Score=46.64 Aligned_cols=101 Identities=26% Similarity=0.220 Sum_probs=70.0
Q ss_pred hHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCc--cccccccc
Q 006816 108 GVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNT--IDGPTSLV 185 (630)
Q Consensus 108 ~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~--i~~~~~~~ 185 (630)
.+++|.|+|++- ....+++..+++.. ..++.+..++..++| ++++....+++ .+++++.
T Consensus 367 ~v~~a~G~A~~G--------------~~~~~~~~f~~Fl~---~a~dqi~~~a~~~~~-v~~v~~~~g~~~G~dG~tH~- 427 (616)
T 3mos_A 367 MVSIAVGCATRN--------------RTVPFCSTFAAFFT---RAFDQIRMAAISESN-INLCGSHCGVSIGEDGPSQM- 427 (616)
T ss_dssp HHHHHHHHHGGG--------------CCEEEEEEEGGGGG---GGHHHHHHHHHTTCC-EEEEEESBSGGGCTTCGGGC-
T ss_pred HHHHHHHHHHcC--------------CCCEEEEehHHHHH---HHHHHHHHHHHhCCC-eEEEEECCCccccCCCCccc-
Confidence 446667777654 22356668888864 788999988889988 66777776653 3445432
Q ss_pred ChhcHHHHHHhC-CCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEE
Q 006816 186 LSEDISARFKSL-GWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRV 233 (630)
Q Consensus 186 ~~~~~~~~~~a~-G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~ 233 (630)
..+++ ..++.. |+.++.. . |..++..+++.+.+ .++|++|..
T Consensus 428 ~~ed~-a~l~~iP~l~V~~P---~-d~~e~~~~l~~a~~-~~gp~~ir~ 470 (616)
T 3mos_A 428 ALEDL-AMFRSVPTSTVFYP---S-DGVATEKAVELAAN-TKGICFIRT 470 (616)
T ss_dssp BSSHH-HHHHTSTTEEEECC---C-SHHHHHHHHHHHHT-CCSEEEEEC
T ss_pred CHHHH-HHhcCCCCCEEEec---C-CHHHHHHHHHHHHh-cCCCEEEEE
Confidence 22344 455555 8888887 5 99999999998887 689987743
No 77
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=87.09 E-value=1.6 Score=48.22 Aligned_cols=115 Identities=15% Similarity=0.082 Sum_probs=75.3
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCceEeeehHHHHHhhHHHHHHhcccCCCeEEEEecCCCC-CCCCCCCCCCh----
Q 006816 366 RNIRYGVREHAMAGISNGVALHGGGLIPFAATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIG-LGEDGPTHQPV---- 440 (630)
Q Consensus 366 R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~~~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~-~g~~G~tHq~~---- 440 (630)
|++- ..-|++++.+|.|+|... |.-.++.+..+-+.-++..|.++...+.|++++....... .+.+...||.+
T Consensus 65 ~~i~-~~~E~~A~~~A~GyAr~t-G~~v~~~tsGpG~~N~~~gi~~A~~~~vPlv~itg~~~~~~~~~~~~~~~~~~~~~ 142 (570)
T 2vbf_A 65 KWIG-NANELNASYMADGYARTK-KAAAFLTTFGVGELSAINGLAGSYAENLPVVEIVGSPTSKVQNDGKFVHHTLADGD 142 (570)
T ss_dssp EEEE-CSSHHHHHHHHHHHHHHH-SCEEEEEETTHHHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSC
T ss_pred eEEC-cCcHHHHHHHHHHHHHHh-CCeEEEEcCCCCHHHHHHHHHHHhhhCCCEEEEeCCCCHHHhhccccceeeccccc
Confidence 4444 489999999999999764 3223334677777778888887778899999985322221 23233445522
Q ss_pred --hhhHHhhcCCCcEEEecCChHHHHHHHH----HHHHcCCCcEEEEEcCC
Q 006816 441 --EQLAGLRAVPRLLAFRPADGNETAGSYR----VAIANRDVPSVIALSRQ 485 (630)
Q Consensus 441 --~d~a~l~~iP~l~v~~P~d~~e~~~~l~----~a~~~~~~P~~ir~~r~ 485 (630)
+...+++.+.-.....+. .++...++ .|+.. .+|++|-+|..
T Consensus 143 ~~~~~~~~~~~tk~~~~v~~--~~~~~~l~~A~~~A~~~-~GPV~l~iP~d 190 (570)
T 2vbf_A 143 FKHFMKMHEPVTAARTLLTA--ENATYEIDRVLSQLLKE-RKPVYINLPVD 190 (570)
T ss_dssp CCHHHHHTGGGCSEEEECCT--TTHHHHHHHHHHHHHHH-CCCEEEEEEHH
T ss_pred hHHHHHHhhhhEEEEEEECc--ccHHHHHHHHHHHHhhC-CCCEEEEcchh
Confidence 246788888866555544 55555555 44545 59999998864
No 78
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=86.71 E-value=2.6 Score=46.46 Aligned_cols=116 Identities=20% Similarity=0.123 Sum_probs=75.2
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCceEe-eehHHHHHhhHHHHHHhcccCCCeEEEEecCCCC-CCCCCCCCCCh---
Q 006816 366 RNIRYGVREHAMAGISNGVALHGGGLIPFA-ATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIG-LGEDGPTHQPV--- 440 (630)
Q Consensus 366 R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~-~~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~-~g~~G~tHq~~--- 440 (630)
|++. ..-|++++-+|.|+|... | .+++ .|..+=...++..|.++...+.||+++....... .+.+-..||.+
T Consensus 44 ~~v~-~~~E~~Aa~~A~Gyar~t-g-~~v~~~TsGpG~~N~~~gia~A~~~~~Pll~itg~~~~~~~~~~~~~~~~~g~~ 120 (563)
T 2vk8_A 44 RWAG-NANELNAAYAADGYARIK-G-MSCIITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNG 120 (563)
T ss_dssp EECC-CSSHHHHHHHHHHHHHHH-S-CEEEEEETTHHHHHHHHHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTTSCSSS
T ss_pred eEEc-cCchHHHHHHHHHHHHhh-C-CcEEEEcCCCcHHHHHHHHHHHHhhCCCEEEEECCCChHHhhcccccccccCCc
Confidence 5555 489999999999999875 4 4443 4566655567777777777899999885322221 22222333322
Q ss_pred ---hhhHHhhcCCCcEEEecCCh----HHHHHHHHHHHHcCCCcEEEEEcCCC
Q 006816 441 ---EQLAGLRAVPRLLAFRPADG----NETAGSYRVAIANRDVPSVIALSRQK 486 (630)
Q Consensus 441 ---~d~a~l~~iP~l~v~~P~d~----~e~~~~l~~a~~~~~~P~~ir~~r~~ 486 (630)
+...+++.+--..... .++ ..+..+++.|... .+|++|-+|..-
T Consensus 121 ~~q~~~~~~~~~~k~~~~v-~~~~~~~~~i~~A~~~A~~~-~GPV~l~iP~d~ 171 (563)
T 2vk8_A 121 DFTVFHRMSANISETTAMI-TDIATAPAEIDRCIRTTYVT-QRPVYLGLPANL 171 (563)
T ss_dssp CSSHHHHHHHTTCSEEEEC-CCTTTHHHHHHHHHHHHHHH-TSCEEEEEETTG
T ss_pred chHHHHHHhhhhEEEEEEe-CCHHHHHHHHHHHHHHHHhC-CCCEEEEechhh
Confidence 3467888887654433 443 4455666666665 599999999763
No 79
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=86.45 E-value=1.6 Score=48.20 Aligned_cols=117 Identities=9% Similarity=-0.057 Sum_probs=79.3
Q ss_pred CCccccccchHHHHHHHHHHHhcCCCCceEe-eehHHHHHhhHHHHHHhcccCCCeEEEEecCCCC-CCC-CCCCCCChh
Q 006816 365 GRNIRYGVREHAMAGISNGVALHGGGLIPFA-ATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIG-LGE-DGPTHQPVE 441 (630)
Q Consensus 365 ~R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~-~~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~-~g~-~G~tHq~~~ 441 (630)
=|++.+ .-|++++-+|-|+|... |...++ .|..+=+..++..|.++...+.||+++....... .|. .| .+|.++
T Consensus 48 i~~i~~-~~E~~Aa~~A~GyAr~t-g~pgv~~~TsGpG~~N~~~~i~~A~~~~vPll~itg~~~~~~~~~~~~-~~Q~~d 124 (568)
T 2c31_A 48 QRFYSF-RHEQHAGYAASIAGYIE-GKPGVCLTVSAPGFLNGVTSLAHATTNCFPMILLSGSSEREIVDLQQG-DYEEMD 124 (568)
T ss_dssp CEEEEC-SSHHHHHHHHHHHHHHH-SSCEEEEECSHHHHHHHHHHHHHHHHHTCCEEEEEEECCHHHHHTTCC-CTTCCC
T ss_pred CcEEEe-CcHHHHHHHHHHHHHHh-CCCEEEEEcCCccHHHHHHHHHHHHhcCCCEEEEccCCCccccCCCCC-cccccC
Confidence 355554 89999999999999874 133233 4566666677788888878899999985322221 221 13 467777
Q ss_pred hhHHhhcCCCcEEEecCChHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 006816 442 QLAGLRAVPRLLAFRPADGNETAGSYRVAIA----NRDVPSVIALSRQ 485 (630)
Q Consensus 442 d~a~l~~iP~l~v~~P~d~~e~~~~l~~a~~----~~~~P~~ir~~r~ 485 (630)
...+++.+-..... ..++.++...++.|++ .+.+|++|-+|..
T Consensus 125 q~~~~~~~tk~~~~-v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 171 (568)
T 2c31_A 125 QMNVARPHCKASFR-INSIKDIPIGIARAVRTAVSGRPGGVYVDLPAK 171 (568)
T ss_dssp HHHHSGGGSSEEEE-CCSGGGHHHHHHHHHHHHHSSSCCEEEEEEETH
T ss_pred HHHHHHhhhheeee-cCCHHHHHHHHHHHHHHhcCCCCceEEEeCCHH
Confidence 88999988776444 4556666666665543 3579999999875
No 80
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=86.26 E-value=1.7 Score=47.97 Aligned_cols=115 Identities=10% Similarity=0.036 Sum_probs=79.0
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCce-Ee-eehHHHHHhhHHHHHHhcccCCCeEEEEecCCCC-CCC-CCCCCCChh
Q 006816 366 RNIRYGVREHAMAGISNGVALHGGGLIP-FA-ATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIG-LGE-DGPTHQPVE 441 (630)
Q Consensus 366 R~~~~gIaE~~~vg~a~GlA~~G~~~~p-v~-~~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~-~g~-~G~tHq~~~ 441 (630)
|++.+ .-|++++-+|-|+|... -+| ++ .|..+=+..++..|.++.+.+.||+++....... .+. .| .+|.++
T Consensus 47 ~~i~~-~hE~~Aa~~A~Gyar~t--g~pgv~~~TsGpG~~N~~~gi~~A~~~~vPll~itg~~~~~~~~~~~~-~~Q~~d 122 (564)
T 2q28_A 47 RYIGF-RHEQSAGYAAAASGFLT--QKPGICLTVSAPGFLNGLTALANATVNGFPMIMISGSSDRAIVDLQQG-DYEELD 122 (564)
T ss_dssp EEEEC-SSHHHHHHHHHHHHHHH--SSCEEEEECSHHHHHHHHHHHHHHHHHTCCEEEEEEECCHHHHHTTSC-CTTCCC
T ss_pred cEEee-CCHHHHHHHHHHHHHHh--CCCEEEEEccCchHHHHHHHHHHHHhcCCCEEEEeCCCCccccCCCCC-cccccc
Confidence 55554 89999999999999875 344 33 4566666677778888878899999885222221 121 13 467778
Q ss_pred hhHHhhcCCCcEEEecCChHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 006816 442 QLAGLRAVPRLLAFRPADGNETAGSYRVAIA----NRDVPSVIALSRQ 485 (630)
Q Consensus 442 d~a~l~~iP~l~v~~P~d~~e~~~~l~~a~~----~~~~P~~ir~~r~ 485 (630)
...+++.+--..+.. .++.++...++.|++ .+++|++|-+|..
T Consensus 123 q~~~~~~~tk~~~~v-~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 169 (564)
T 2q28_A 123 QMNAAKPYAKAAFRV-NQPQDLGIALARAIRVSVSGRPGGVYLDLPAN 169 (564)
T ss_dssp HHHHHGGGSSEEEEC-CSGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred HHHHHHHhhheeeec-CCHHHHHHHHHHHHHHHhcCCCceEEEEcCHH
Confidence 889999888765444 455666666665554 3579999998865
No 81
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Probab=85.12 E-value=2.2 Score=44.46 Aligned_cols=101 Identities=20% Similarity=0.089 Sum_probs=59.6
Q ss_pred hhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEE-EcccccCchhHHHHHHH-hHHc--------CCCcEEEEEECCCC
Q 006816 107 QGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCI-MSDGCAMEGISHEAAAL-AAHW--------KLNKLTLIYDDNHN 176 (630)
Q Consensus 107 ~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~-~GDG~~~eG~~~eal~~-a~~~--------~L~~li~i~~~N~~ 176 (630)
..++.|.|+|++. -+.++++ .+|.. + ..++.+.. ++.. ++| +++++...+.
T Consensus 109 ~~v~~a~G~A~~G---------------~rpv~~~tf~~Fl-~--~a~Dqi~~~~a~~~~~~~g~~~~p-vv~~~~~gg~ 169 (369)
T 1ik6_A 109 GILGFAMGMAMAG---------------LKPVAEIQFVDFI-W--LGADELLNHIAKLRYRSGGNYKAP-LVVRTPVGSG 169 (369)
T ss_dssp HHHHHHHHHHHTT---------------CEEEEECCCC-------CCHHHHHHHHHHHHC------CCC-CEEEEEECC-
T ss_pred HHHHHHHHHHHCC---------------CeeEEEecchhHH-H--HHHHHHHHHHHHHHHhhCCCCCCC-EEEEEeCCCC
Confidence 4556788887753 2445544 88866 3 56777754 4433 888 5555554442
Q ss_pred cccccccccChhcHHHHHHhC-CCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEe
Q 006816 177 TIDGPTSLVLSEDISARFKSL-GWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVK 234 (630)
Q Consensus 177 ~i~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~ 234 (630)
.-++++.. .....++++. ||.++.. . |..+...+++.|.+ .++|++|...
T Consensus 170 ~g~g~~hs---~~~~a~l~~iPnl~V~~P---s-d~~e~~~ll~~A~~-~~~Pv~i~~p 220 (369)
T 1ik6_A 170 TRGGLYHS---NSPEAIFVHTPGLVVVMP---S-TPYNAKGLLKAAIR-GDDPVVFLEP 220 (369)
T ss_dssp -------------HHHHHHTCTTCEEECC---C-SHHHHHHHHHHHHH-SSSCEEEEEE
T ss_pred CCCCcccc---ccHHHHHcCCCCcEEEec---C-CHHHHHHHHHHHHh-CCCCEEEEEe
Confidence 22332221 1224667776 9999988 5 99999999998887 7899988643
No 82
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=84.16 E-value=2.2 Score=43.73 Aligned_cols=101 Identities=22% Similarity=0.162 Sum_probs=66.4
Q ss_pred hhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEE-EcccccCchhHHHHHHH-hHH--------cCCCcEEEEEECCCC
Q 006816 107 QGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCI-MSDGCAMEGISHEAAAL-AAH--------WKLNKLTLIYDDNHN 176 (630)
Q Consensus 107 ~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~-~GDG~~~eG~~~eal~~-a~~--------~~L~~li~i~~~N~~ 176 (630)
..+++|.|+|++. -+.++++ .+++. + ..++.+.. ++. .++| +++++...+
T Consensus 63 ~~~~~a~G~A~~G---------------~rp~~~~t~~~F~-~--~a~dqi~~~~a~~~~~~~~~~~~p-vv~~~~~~g- 122 (338)
T 1qs0_B 63 GIVGTAVGMGAYG---------------LRPVVEIQFADYF-Y--PASDQIVSEMARLRYRSAGEFIAP-LTLRMPCGG- 122 (338)
T ss_dssp HHHHHHHHHHHHT---------------CEEEEECSCGGGC-G--GGHHHHHTTTTTHHHHTTTSSCCC-CEEEEEECC-
T ss_pred HHHHHHHHHHhCC---------------CEEEEEeccHhHH-H--HHHHHHHHHHHHHhhhcCCCCCCC-EEEEEeCCC-
Confidence 4567788888764 2344444 88886 4 67777653 442 3588 555554433
Q ss_pred cccccccccChhcHHHHHHhC-CCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEe
Q 006816 177 TIDGPTSLVLSEDISARFKSL-GWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVK 234 (630)
Q Consensus 177 ~i~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~ 234 (630)
+.++++.... .|+ ..+++. ||.++.. . |..+....++.|.+ .++|++|...
T Consensus 123 ~~~G~th~s~-~d~-~~l~~iP~l~V~~P---s-d~~e~~~~l~~A~~-~~~Pv~i~~p 174 (338)
T 1qs0_B 123 GIYGGQTHSQ-SPE-AMFTQVCGLRTVMP---S-NPYDAKGLLIASIE-CDDPVIFLEP 174 (338)
T ss_dssp SSSCCSSSSC-CCH-HHHTTSTTCEEECC---C-SHHHHHHHHHHHHH-SSSCEEEEEE
T ss_pred CCCCcccccc-cHH-HHHhcCCCCEEEee---C-CHHHHHHHHHHHHh-cCCcEEEEEc
Confidence 4555544222 244 456666 9999998 5 99999999999887 5899998654
No 83
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=83.52 E-value=6.5 Score=44.22 Aligned_cols=114 Identities=15% Similarity=0.046 Sum_probs=73.6
Q ss_pred Ccccccccccch-hHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECC
Q 006816 96 EGIEVTTGPLGQ-GVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDN 174 (630)
Q Consensus 96 ~~~~~~~G~lG~-~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N 174 (630)
|+-.+.+|.-=+ .+++|.|+|+.. --+.+++...+-.. ..++++..++..++| ++++....
T Consensus 402 p~R~~d~GIaE~~~v~~a~GlA~~g--------------G~~P~~~tf~~F~~---~~~~~ir~~a~~~lp-vv~~~t~~ 463 (663)
T 3kom_A 402 GANYLSYGVREFGMAAIMNGLSLYG--------------GIKPYGGTFLVFSD---YSRNAIRMSALMKQP-VVHVMSHD 463 (663)
T ss_dssp TCCEEECCSCHHHHHHHHHHHHHHS--------------SCEEEEEEEGGGHH---HHHHHHHHHHHTTCC-CEEEEECC
T ss_pred CCCeEecCccHHHHHHHHHHHHHcC--------------CCEEEEEehHHHHH---HHHHHHHHHHhcCCC-EEEEEeCC
Confidence 444444554434 456778888752 13456666555442 457888888999999 56665444
Q ss_pred CC--cccccccccChhcHHHHHHhC-CCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEE
Q 006816 175 HN--TIDGPTSLVLSEDISARFKSL-GWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRV 233 (630)
Q Consensus 175 ~~--~i~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~ 233 (630)
++ +.++++.. ..+++ ..++.. |+.++.. . |..++..+++.|.+..++|++|..
T Consensus 464 g~g~G~dG~THq-~~ed~-a~lr~iPnl~V~~P---a-d~~e~~~~l~~A~~~~~~Pv~ir~ 519 (663)
T 3kom_A 464 SIGLGEDGPTHQ-PIEHV-PSLRLIPNLSVWRP---A-DTIETMIAWKEAVKSKDTPSVMVL 519 (663)
T ss_dssp SGGGCTTCTTTC-CSSHH-HHHHTSTTCEEECC---C-SHHHHHHHHHHHHHCSSCCEEEEC
T ss_pred ccccCCCCCCcC-CHHHH-HHHhcCCCcEEEee---C-CHHHHHHHHHHHHHhCCCCEEEEc
Confidence 43 44566552 23344 455555 9999988 5 899999999988763489998854
No 84
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=83.47 E-value=6 Score=44.23 Aligned_cols=113 Identities=20% Similarity=0.145 Sum_probs=73.6
Q ss_pred Ccccccccccch-hHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECC
Q 006816 96 EGIEVTTGPLGQ-GVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDN 174 (630)
Q Consensus 96 ~~~~~~~G~lG~-~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N 174 (630)
|+-.+.+|.-=+ .+++|.|+|+.. --++++.+..+-. . ..++.+..++..++| ++++....
T Consensus 381 p~R~~d~GIaE~~~v~~a~GlA~~g--------------G~~P~~~~f~~F~--~-~~~~~ir~~a~~~~p-v~~~~t~~ 442 (632)
T 3l84_A 381 EGKNIHFGIREHAMAAINNAFARYG--------------IFLPFSATFFIFS--E-YLKPAARIAALMKIK-HFFIFTHD 442 (632)
T ss_dssp TSSEEECCSCHHHHHHHHHHHHHHS--------------SCEEEEEEEGGGH--H-HHHHHHHHHHHHTCC-CEEEEECC
T ss_pred CCCeEEeCccHHHHHHHHHHHHHcC--------------CCEEEEEecHHHH--H-HHHHHHHHHhccCCC-EEEEEECC
Confidence 333444454433 446777888752 1345666554433 2 567788888899999 66666444
Q ss_pred CC--cccccccccChhcHHHHHHhC-CCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEE
Q 006816 175 HN--TIDGPTSLVLSEDISARFKSL-GWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRV 233 (630)
Q Consensus 175 ~~--~i~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~ 233 (630)
++ +.++++.. ..+++ ..++.. |+.++.. . |..+...+++.|.+ .++|++|..
T Consensus 443 g~g~G~dG~THq-~~ed~-a~lr~iP~l~V~~P---~-d~~e~~~~l~~A~~-~~~Pv~ir~ 497 (632)
T 3l84_A 443 SIGVGEDGPTHQ-PIEQL-STFRAMPNFLTFRP---A-DGVENVKAWQIALN-ADIPSAFVL 497 (632)
T ss_dssp SGGGCTTCGGGS-CSSHH-HHHHHSSSCEEECC---S-SHHHHHHHHHHHHH-CSSCEEEEC
T ss_pred CcCCCCCCCCCC-CHhHH-HHHhcCCCCEEEec---C-CHHHHHHHHHHHHh-CCCCEEEEE
Confidence 44 44566552 23344 456665 9999988 5 89999999999887 789998864
No 85
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=82.35 E-value=4.2 Score=44.58 Aligned_cols=116 Identities=15% Similarity=0.054 Sum_probs=74.2
Q ss_pred CccccccchHHHHHHHHHHHhcCCCCceEe-eehHHHHHhhHHHHHHhcccCCCeEEEEecCCCC-CCCCCCCCCCh---
Q 006816 366 RNIRYGVREHAMAGISNGVALHGGGLIPFA-ATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIG-LGEDGPTHQPV--- 440 (630)
Q Consensus 366 R~~~~gIaE~~~vg~a~GlA~~G~~~~pv~-~~~~~F~~~a~dqi~~~a~~~~pv~~v~~~~g~~-~g~~G~tHq~~--- 440 (630)
|++. ..-|++++-+|.|+|... | .+++ .+..+=...++..|.++...+.|++++....... .+.+-..||.+
T Consensus 45 ~~i~-~~~E~~A~~~A~Gyar~t-g-~~v~~~tsGpG~~N~~~gv~~A~~~~~Pll~itg~~p~~~~~~~~~~~~~~g~~ 121 (552)
T 1ovm_A 45 CWVG-CANELNASYAADGYARCK-G-FAALLTTFGVGELSAMNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDG 121 (552)
T ss_dssp EEEE-CSSHHHHHHHHHHHHHHH-S-CEEEEEETTHHHHHTHHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSS
T ss_pred eEEe-eCcHHHHHHHHHHHHHhh-C-CcEEEEccCCcHHHHHHHHHHHhhhcCCEEEEECCCCHHHHhcccccccccCCC
Confidence 3443 489999999999999987 4 4444 3565555667777877788899999986332221 22222233322
Q ss_pred ---hhhHHhhcCCCcEEEecCC--hHHHHHHHHHHHHcCCCcEEEEEcCC
Q 006816 441 ---EQLAGLRAVPRLLAFRPAD--GNETAGSYRVAIANRDVPSVIALSRQ 485 (630)
Q Consensus 441 ---~d~a~l~~iP~l~v~~P~d--~~e~~~~l~~a~~~~~~P~~ir~~r~ 485 (630)
+...+++.+--.....+.+ +..+..+++.|... .+|++|-+|..
T Consensus 122 ~~q~~~~~~~~~tk~~~~v~~~~~~~~i~~A~~~a~~~-~GPV~l~iP~d 170 (552)
T 1ovm_A 122 EFRHFYHMSEPITVAQAVLTEQNACYEIDRVLTTMLRE-RRPGYLMLPAD 170 (552)
T ss_dssp CCSHHHHHTGGGCSEEEECCTTTHHHHHHHHHHHHHHH-TCCEEEEEEHH
T ss_pred cHHHHHHHHHhheeEEEEEccccHHHHHHHHHHHHHhC-CCCEEEEeehh
Confidence 3467888887766666541 23444455555555 59999998864
No 86
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=82.11 E-value=3.5 Score=46.02 Aligned_cols=101 Identities=18% Similarity=0.143 Sum_probs=68.4
Q ss_pred hHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHH-HHHhHHcCCCcEEEEEECCCCc-cccccccc
Q 006816 108 GVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEA-AALAAHWKLNKLTLIYDDNHNT-IDGPTSLV 185 (630)
Q Consensus 108 ~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~ea-l~~a~~~~L~~li~i~~~N~~~-i~~~~~~~ 185 (630)
.+++|.|+|++. -+.++++.++.. + ..++- ++.++..++| +++++...++. -++++..
T Consensus 373 ~~~~a~G~A~~G---------------~rp~~~~~~~F~-~--~a~dqi~~~~a~~~~p-vv~~~~~~g~~g~~G~tH~- 432 (621)
T 2o1s_A 373 AVTFAAGLAIGG---------------YKPIVAIYSTFL-Q--RAYDQVLHDVAIQKLP-VLFAIDRAGIVGADGQTHQ- 432 (621)
T ss_dssp HHHHHHHHHHTT---------------CEEEEEEETTGG-G--GGHHHHHHTTTTTTCC-CEEEEESCBCCCTTCGGGC-
T ss_pred HHHHHHHHHHCC---------------CEEEEEehHhHH-H--HHHHHHHHHHHhcCCC-EEEEEECCccCCCCCCccC-
Confidence 456777777743 356777777764 3 55654 5668889999 66666766652 2344432
Q ss_pred ChhcHHHHHHhC-CCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEE
Q 006816 186 LSEDISARFKSL-GWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRV 233 (630)
Q Consensus 186 ~~~~~~~~~~a~-G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~ 233 (630)
...|+ ..++.. ||.++.. . |..+...+++.|.+..++|++|..
T Consensus 433 ~~~d~-~~~~~iP~l~v~~P---~-d~~e~~~~l~~a~~~~~~Pv~i~~ 476 (621)
T 2o1s_A 433 GAFDL-SYLRCIPEMVIMTP---S-DENECRQMLYTGYHYNDGPSAVRY 476 (621)
T ss_dssp BCSHH-HHTTTSTTCEEECC---S-SHHHHHHHHHHHHHCCSSCEEEEC
T ss_pred chHHH-HHHhcCCCCEEEec---C-CHHHHHHHHHHHHHcCCCCEEEEe
Confidence 22343 455665 9999998 5 999999999998873389998864
No 87
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=81.94 E-value=5.7 Score=44.62 Aligned_cols=114 Identities=18% Similarity=0.098 Sum_probs=71.9
Q ss_pred Ccccccccccc-hhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECC
Q 006816 96 EGIEVTTGPLG-QGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDN 174 (630)
Q Consensus 96 ~~~~~~~G~lG-~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N 174 (630)
|+-.+.+|.-= ..+++|.|+|+.- .-+.+++...=.. . ..++++..++..++| +++++...
T Consensus 396 p~R~i~~gIaE~~~~~~a~GlA~~G--------------g~~P~~~t~~~F~--~-~~~~air~~a~~~lp-vv~~~t~~ 457 (651)
T 2e6k_A 396 LGRYLHFGVREHAMGAILNGLNLHG--------------GYRAYGGTFLVFS--D-YMRPAIRLAALMGVP-TVFVFTHD 457 (651)
T ss_dssp TCCEEECCSCHHHHHHHHHHHHHHS--------------SCEEEEEEEGGGG--G-GSHHHHHHHHHHTCC-CEEEEECC
T ss_pred CCceEecCcCHHHHHHHHHHHHHcC--------------CCEEEEEeHHHHH--H-HHHHHHHHHHhcCCC-EEEEEECC
Confidence 33334444332 3446777877642 1345555542222 1 457778889999999 55666555
Q ss_pred CCcc--cccccccChhcHHHHHHhC-CCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEE
Q 006816 175 HNTI--DGPTSLVLSEDISARFKSL-GWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRV 233 (630)
Q Consensus 175 ~~~i--~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~ 233 (630)
+.+. ++++. +..+|++ .+++. |+.++.. . |..++..+++.|.+..++|++|..
T Consensus 458 g~g~G~dG~tH-q~~edla-~lr~iP~l~V~~P---a-d~~E~~~~l~~A~~~~~~Pv~i~~ 513 (651)
T 2e6k_A 458 SIALGEDGPTH-QPVEHLM-SLRAMPNLFVIRP---A-DAYETFYAWLVALRRKEGPTALVL 513 (651)
T ss_dssp SGGGCTTCTTT-CCSSHHH-HHHTSTTCEEECC---S-SHHHHHHHHHHHHHCCSSCEEEEC
T ss_pred ccccCCCcCcc-ccHHHHH-HhcCCCCcEEEec---C-CHHHHHHHHHHHHHcCCCCEEEEE
Confidence 5443 55555 3345554 45665 9999988 5 899999999988873378998875
No 88
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=81.49 E-value=5.2 Score=45.07 Aligned_cols=102 Identities=18% Similarity=0.105 Sum_probs=66.8
Q ss_pred hHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCc--cccccccc
Q 006816 108 GVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNT--IDGPTSLV 185 (630)
Q Consensus 108 ~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~--i~~~~~~~ 185 (630)
.+++|.|+|+.. .-+.+++....... ..++++..++..++| +++++-..+++ -++++. +
T Consensus 414 ~v~~a~GlA~~g--------------G~~P~~~tf~~F~~---~~~~~ir~~a~~~lp-vv~~~t~~g~~~G~dG~tH-q 474 (669)
T 2r8o_A 414 MTAIANGISLHG--------------GFLPYTSTFLMFVE---YARNAVRMAALMKQR-QVMVYTHDSIGLGEDGPTH-Q 474 (669)
T ss_dssp HHHHHHHHHHHS--------------SCEEEEEEEGGGGG---TTHHHHHHHHHTTCC-CEEEEECCSGGGCTTCTTT-C
T ss_pred HHHHHHHHHHcC--------------CCeEEEeehHHHHH---HHHHHHHHHHhcCCC-EEEEEeCCCcCcCCCCCcc-C
Confidence 345677777652 12445555544332 457888889999998 55566544544 355554 2
Q ss_pred ChhcHHHHHHhC-CCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEE
Q 006816 186 LSEDISARFKSL-GWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRV 233 (630)
Q Consensus 186 ~~~~~~~~~~a~-G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~ 233 (630)
..++++ .+++. |+.++.. . |..++..+++.|.+..++|++|..
T Consensus 475 ~~edla-~lr~iP~l~V~~P---a-d~~E~~~~l~~a~~~~~~Pv~i~~ 518 (669)
T 2r8o_A 475 PVEQVA-SLRVTPNMSTWRP---C-DQVESAVAWKYGVERQDGPTALIL 518 (669)
T ss_dssp CSSHHH-HHHTSTTCEEECC---S-SHHHHHHHHHHHHHCSSSCEEEEC
T ss_pred CHHHHH-HhcCCCCCEEEec---C-CHHHHHHHHHHHHHhCCCcEEEEe
Confidence 334443 45555 9999888 5 899999999998873389999864
No 89
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=81.47 E-value=3.9 Score=46.18 Aligned_cols=87 Identities=17% Similarity=0.138 Sum_probs=58.5
Q ss_pred eEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCc--ccccccccChhcHHHHHHhC-CCeEEEEeCCCCCHHH
Q 006816 137 RTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNT--IDGPTSLVLSEDISARFKSL-GWNTIMVENIHDNLSS 213 (630)
Q Consensus 137 ~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~--i~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~d~~~ 213 (630)
.+++...+-+. ..++++..++..++| +++++-..+.+ .++++. +..+++ .++++. |+.++.. . |..+
T Consensus 437 P~~~~f~~F~~---~~~~air~~a~~~lp-vv~v~t~~g~g~G~dG~tH-q~~edl-a~lr~iP~l~V~~P---a-d~~e 506 (680)
T 1gpu_A 437 PYGGTFLNFVS---YAAGAVRLSALSGHP-VIWVATHDSIGVGEDGPTH-QPIETL-AHFRSLPNIQVWRP---A-DGNE 506 (680)
T ss_dssp EEEEEEHHHHG---GGHHHHHHHHHHTCC-CEEEEECCSGGGCTTCTTT-CCSSHH-HHHHTSSSCEEECC---C-SHHH
T ss_pred EEEeehHHHHH---HHHHHHHHHHhcCCC-EEEEEeCCccccCCCCCcc-CCHHHH-HHhcCCCCCEEEec---C-CHHH
Confidence 45555433321 457788889999998 65666444443 456655 333444 445555 9999888 5 8999
Q ss_pred HHHHHHHHHhcCCCcEEEEE
Q 006816 214 FKEALMAAANETKKPTFIRV 233 (630)
Q Consensus 214 l~~al~~a~~~~~~P~~i~~ 233 (630)
+..+++.|.+..++|++|..
T Consensus 507 ~~~~l~~A~~~~~~Pv~i~~ 526 (680)
T 1gpu_A 507 VSAAYKNSLESKHTPSIIAL 526 (680)
T ss_dssp HHHHHHHHHHCSSCCEEEEC
T ss_pred HHHHHHHHHHhCCCcEEEEe
Confidence 99999988872389999864
No 90
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=80.74 E-value=3.8 Score=42.10 Aligned_cols=101 Identities=17% Similarity=0.125 Sum_probs=65.8
Q ss_pred hhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEE-EcccccCchhHHHHHH-HhHHc--------CC-CcEEEEEECCC
Q 006816 107 QGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCI-MSDGCAMEGISHEAAA-LAAHW--------KL-NKLTLIYDDNH 175 (630)
Q Consensus 107 ~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~-~GDG~~~eG~~~eal~-~a~~~--------~L-~~li~i~~~N~ 175 (630)
..+++|.|+|++. -+.++++ .+++. + ..++.+. .++.+ ++ | +++++...+
T Consensus 78 ~~v~~a~G~A~~G---------------~rp~~~~tf~~F~-~--~a~dqi~~~~a~~~~~~~g~~~~~p-vv~~~~~~g 138 (342)
T 2bfd_B 78 GIVGFGIGIAVTG---------------ATAIAEIQFADYI-F--PAFDQIVNEAAKYRYRSGDLFNCGS-LTIRSPWGC 138 (342)
T ss_dssp HHHHHHHHHHHTT---------------CCEEEECSSGGGC-G--GGHHHHHTTGGGHHHHTTTSSCCTT-EEEEEEESC
T ss_pred HHHHHHHHHHHCC---------------CeeEEEecchhHH-H--HHHHHHHHHHHHHHhhhcCCccCCC-EEEEEecCC
Confidence 4567788887753 2345544 78874 3 6777775 44433 33 6 666666544
Q ss_pred CcccccccccChhcHHHHHHhC-CCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEe
Q 006816 176 NTIDGPTSLVLSEDISARFKSL-GWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVK 234 (630)
Q Consensus 176 ~~i~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~ 234 (630)
..++++... ..|+ ..+++. ||.++.. . |..+....++.|.+ .++|++|-..
T Consensus 139 -~~~G~th~~-~~d~-~~l~~iP~l~V~~P---s-d~~e~~~~l~~a~~-~~~Pv~i~~p 190 (342)
T 2bfd_B 139 -VGHGALYHS-QSPE-AFFAHCPGIKVVIP---R-SPFQAKGLLLSCIE-DKNPCIFFEP 190 (342)
T ss_dssp -CSSCGGGSS-CCCH-HHHHTSTTCEEECC---S-SHHHHHHHHHHHHH-SSSCEEEEEE
T ss_pred -CCCCcchhh-HhHH-HHHhcCCCcEEEee---C-CHHHHHHHHHHHHh-cCCcEEEEec
Confidence 335544322 2444 456666 9999988 5 99999999999887 5899998654
No 91
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=79.43 E-value=11 Score=42.65 Aligned_cols=74 Identities=26% Similarity=0.284 Sum_probs=52.9
Q ss_pred HHHHHHhHHcCCCcEEEEEECCCC--cccccccccChhcHHHHHHhC-CCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcE
Q 006816 153 HEAAALAAHWKLNKLTLIYDDNHN--TIDGPTSLVLSEDISARFKSL-GWNTIMVENIHDNLSSFKEALMAAANETKKPT 229 (630)
Q Consensus 153 ~eal~~a~~~~L~~li~i~~~N~~--~i~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~ 229 (630)
..++..++..++| +++++...++ +.++++.. ..+++ ..++.. |+.++.. . |..+...+++.|.+..++|+
T Consensus 467 ~~air~~al~~lp-Vv~v~~~~gigvG~dG~THq-~ied~-a~lr~iPnl~V~~P---a-d~~E~~~~l~~Ai~~~~~Pv 539 (690)
T 3m49_A 467 RPAIRLAALMQLP-VTYVFTHDSIAVGEDGPTHE-PIEQL-AALRAMPNVSVIRP---A-DGNESVAAWRLALESTNKPT 539 (690)
T ss_dssp HHHHHHHHHHTCC-CEEEEECCSGGGCTTCGGGC-CSSHH-HHHHTSTTCEEECC---S-SHHHHHHHHHHHHHCSSSCE
T ss_pred HHHHHHHHhcCCC-cEEEEECCCcCCCCCCCccC-CHHHH-HHHhcCCCCEEEee---C-CHHHHHHHHHHHHHcCCCCE
Confidence 3457778889999 6677776665 44566552 23344 556666 9999988 5 89999999998886337899
Q ss_pred EEEE
Q 006816 230 FIRV 233 (630)
Q Consensus 230 ~i~~ 233 (630)
+|..
T Consensus 540 ~ir~ 543 (690)
T 3m49_A 540 ALVL 543 (690)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 9854
No 92
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=79.22 E-value=7.6 Score=43.77 Aligned_cols=88 Identities=17% Similarity=0.109 Sum_probs=59.2
Q ss_pred ceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCC--cccccccccChhcHHHHHHhC-CCeEEEEeCCCCCHH
Q 006816 136 HRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHN--TIDGPTSLVLSEDISARFKSL-GWNTIMVENIHDNLS 212 (630)
Q Consensus 136 ~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~--~i~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~d~~ 212 (630)
+.++.+...-. . ..++++..++..++| +++++...++ +.++++. +..+++ ..+++. |+.++.. . |..
T Consensus 428 ~P~~~~~~~F~--~-~~~~~ir~~a~~~~p-vv~~~t~~g~g~G~dG~tH-q~~edl-a~lr~iP~l~V~~P---a-d~~ 497 (673)
T 1r9j_A 428 IPFGGTFLNFI--G-YALGAVRLAAISHHR-VIYVATHDSIGVGEDGPTH-QPVELV-AALRAMPNLQVIRP---S-DQT 497 (673)
T ss_dssp EEEEEEEGGGG--G-GGHHHHHHHHHHTCC-CEEEEECCSGGGCTTCTTT-CCSSHH-HHHHHSTTCEEECC---S-SHH
T ss_pred EEEEEehHHHH--H-HHHHHHHHHHhcCCC-EEEEEECCccCcCCCCccc-CCHHHH-HHHcCCCCCEEEeC---C-CHH
Confidence 45555553332 2 567788889999999 6666644444 4455655 333444 345555 9999888 5 899
Q ss_pred HHHHHHHHHHhcCCCcEEEEE
Q 006816 213 SFKEALMAAANETKKPTFIRV 233 (630)
Q Consensus 213 ~l~~al~~a~~~~~~P~~i~~ 233 (630)
++..+++.|.+..++|++|..
T Consensus 498 e~~~~l~~a~~~~~~Pv~i~~ 518 (673)
T 1r9j_A 498 ETSGAWAVALSSIHTPTVLCL 518 (673)
T ss_dssp HHHHHHHHHHHCTTCCEEEEC
T ss_pred HHHHHHHHHHHhCCCeEEEEE
Confidence 999999988773389999864
No 93
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=77.90 E-value=11 Score=42.58 Aligned_cols=110 Identities=17% Similarity=0.125 Sum_probs=70.6
Q ss_pred cccccccch-hHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCC--
Q 006816 99 EVTTGPLGQ-GVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNH-- 175 (630)
Q Consensus 99 ~~~~G~lG~-~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~-- 175 (630)
.+.+|.-=+ .+++|.|+|+.. --++++.+.. .|.+ ..+..+..++..++| ++++.-..+
T Consensus 450 ~~d~GIaE~~mv~~AaGlA~~~--------------G~~Pv~~~f~--~F~~-~~~~~ir~~a~~~lp-v~~v~thdg~g 511 (711)
T 3uk1_A 450 HINYGVREFGMSAAINGLVLHG--------------GYKPFGGTFL--TFSD-YSRNALRVAALMKVP-SIFVFTHDSIG 511 (711)
T ss_dssp EEECCSCHHHHHHHHHHHHHHS--------------SCEEEEEEEG--GGHH-HHHHHHHHHHHHTCC-CEEEEECCSGG
T ss_pred EEEeCccHHHHHHHHHHHHHcC--------------CCEEEEEEhH--HHHH-HHHHHHHHhhhcCCC-EEEEEECCCcC
Confidence 334444333 356778888742 1345555543 3332 456778788889999 556654444
Q ss_pred CcccccccccChhcHHHHHHhC-CCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEE
Q 006816 176 NTIDGPTSLVLSEDISARFKSL-GWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRV 233 (630)
Q Consensus 176 ~~i~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~ 233 (630)
++.++++.. ..+++ ..++.. |+.++.. . |..++..+++.|.+ .++|++|..
T Consensus 512 vG~dG~THq-~~ed~-a~lr~iPnl~V~~P---a-d~~E~~~~l~~Ai~-~~~Pv~ir~ 563 (711)
T 3uk1_A 512 LGEDGPTHQ-SVEHV-ASLRLIPNLDVWRP---A-DTVETAVAWTYAVA-HQHPSCLIF 563 (711)
T ss_dssp GCTTCTTTC-CSSHH-HHHHTSTTCEEECC---S-SHHHHHHHHHHHHH-SSSCEEEEC
T ss_pred cCCCCCccC-ChhHH-HHHhcCCCCEEEec---C-CHHHHHHHHHHHHh-cCCCEEEEe
Confidence 455666652 23344 456666 9999988 5 89999999998887 789998854
No 94
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=77.88 E-value=5.8 Score=41.70 Aligned_cols=103 Identities=13% Similarity=0.078 Sum_probs=59.4
Q ss_pred HHHHHHHHhc----CCCCceEeee-hHHHHH-hhHHHHHHhcccCCCeEEEEecCCCCCCCCCCCC--CChhhhHHhhcC
Q 006816 378 AGISNGVALH----GGGLIPFAAT-FLIFSD-YMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTH--QPVEQLAGLRAV 449 (630)
Q Consensus 378 vg~a~GlA~~----G~~~~pv~~~-~~~F~~-~a~dqi~~~a~~~~pv~~v~~~~g~~~g~~G~tH--q~~~d~a~l~~i 449 (630)
+..|.|+|+. |...++|+.. -..|.+ -.++.+..++..++|+++++...+++ ..+++. .+..|++-...-
T Consensus 168 lp~AvG~AlA~~~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~~--i~~~~~~~~~~~d~~~~a~a 245 (400)
T 2bfd_A 168 IPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYA--ISTPTSEQYRGDGIAARGPG 245 (400)
T ss_dssp HHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHHHHHHHTTCCEEEEEEECSEE--TTEEGGGTCSSSTTGGGTGG
T ss_pred ccHHHHHHHhhhhhCCCCeEEEEECchhhhcChHHHHHHHHHHHCcCEEEEEECCcee--eeecccccCCCCCHHHHHHH
Confidence 3566666653 2113444432 566754 35567777788889999998666554 333332 222343332222
Q ss_pred CCcEEEe--cCChHHHHHHHHHHHH---cCCCcEEEEE
Q 006816 450 PRLLAFR--PADGNETAGSYRVAIA---NRDVPSVIAL 482 (630)
Q Consensus 450 P~l~v~~--P~d~~e~~~~l~~a~~---~~~~P~~ir~ 482 (630)
-|+.++. =.|..++..+++.|++ ..++|++|-+
T Consensus 246 ~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~~P~lIe~ 283 (400)
T 2bfd_A 246 YGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEA 283 (400)
T ss_dssp GTCEEEEEETTCHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred cCCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 2444432 2367788888888876 1278998864
No 95
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=77.51 E-value=7.5 Score=40.32 Aligned_cols=103 Identities=18% Similarity=0.202 Sum_probs=63.5
Q ss_pred HHHHHHHHHhc----CCCCceEeee-hHHHHH-hhHHHHHHhcccCCCeEEEEecCCCCCCCCCCCC-----CChhhhHH
Q 006816 377 MAGISNGVALH----GGGLIPFAAT-FLIFSD-YMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTH-----QPVEQLAG 445 (630)
Q Consensus 377 ~vg~a~GlA~~----G~~~~pv~~~-~~~F~~-~a~dqi~~~a~~~~pv~~v~~~~g~~~g~~G~tH-----q~~~d~a~ 445 (630)
.+..|.|+|+. |...++|+.+ -..|.+ -.++.+..++..++|+++++...+++. .++++ ..+.+++-
T Consensus 147 ~lp~AvG~A~A~~~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~gi--~~~~~~~~~~~d~~~~a~ 224 (368)
T 1w85_A 147 QYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAI--STPVEKQTVAKTLAQKAV 224 (368)
T ss_dssp HHHHHHHHHHHHHHTTCSCCEEEEEETGGGGSHHHHHHHHHHHHTTCCEEEEEEECSEET--TEEGGGTCSCSCSGGGGG
T ss_pred cccHHHHHHHHhHhhCCCCeEEEEEchhhhhhcHHHHHHHHHHHHCcCEEEEEEcCCccc--eeccccccCCCCHHHHHH
Confidence 34555666543 3113334332 567765 356677778889999999987776553 22222 12334444
Q ss_pred hhcCCCcEEEecCChHHHHHHHHHHHH---cCCCcEEEEE
Q 006816 446 LRAVPRLLAFRPADGNETAGSYRVAIA---NRDVPSVIAL 482 (630)
Q Consensus 446 l~~iP~l~v~~P~d~~e~~~~l~~a~~---~~~~P~~ir~ 482 (630)
.-.+|+++| -=.|..++..+++.|++ ..++|++|-+
T Consensus 225 a~G~~~~~V-dG~D~~av~~a~~~A~~~~r~~~gP~lIe~ 263 (368)
T 1w85_A 225 AAGIPGIQV-DGMDPLAVYAAVKAARERAINGEGPTLIET 263 (368)
T ss_dssp GTTCCEEEE-ETTCHHHHHHHHHHHHHHHHTTSCCEEEEE
T ss_pred HCCCCEEEE-cCCCHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 456777665 33478899999999886 2378999964
No 96
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=76.74 E-value=8.3 Score=43.48 Aligned_cols=88 Identities=14% Similarity=0.115 Sum_probs=59.4
Q ss_pred ceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCc--ccccccccChhcHHHHHHhC-CCeEEEEeCCCCCHH
Q 006816 136 HRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNT--IDGPTSLVLSEDISARFKSL-GWNTIMVENIHDNLS 212 (630)
Q Consensus 136 ~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~--i~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~d~~ 212 (630)
+.++.+...... ..++++..++..++| ++++.-..+.+ .++++. +..++++ ++++. |+.++.. . |..
T Consensus 441 ~P~~~t~~~F~~---~~~~~ir~~a~~~lp-vv~~~t~~g~g~G~dG~tH-q~~edla-~lr~iP~l~V~~P---a-d~~ 510 (675)
T 1itz_A 441 VPYCATFFVFTD---YMRGAMRISALSEAG-VIYVMTHDSIGLGEDGPTH-QPIEHLV-SFRAMPNILMLRP---A-DGN 510 (675)
T ss_dssp EEEEEEEGGGHH---HHHHHHHHHHHHTCC-CEEEEECCSGGGCTTCTTT-CCSSHHH-HHHSSSSCEEECC---C-SHH
T ss_pred EEEEEEHHHHHH---HHHHHHHHHHhcCCC-EEEEEECCccccCCCCCCc-CcHHHHH-HhccCCCeEEEEC---C-CHH
Confidence 455555544432 567889999999999 55555444443 455555 3334444 45554 9998888 5 899
Q ss_pred HHHHHHHHHHhcCCCcEEEEE
Q 006816 213 SFKEALMAAANETKKPTFIRV 233 (630)
Q Consensus 213 ~l~~al~~a~~~~~~P~~i~~ 233 (630)
++..+++.|.+..++|++|..
T Consensus 511 e~~~~l~~a~~~~~~Pv~i~~ 531 (675)
T 1itz_A 511 ETAGAYKVAVLNRKRPSILAL 531 (675)
T ss_dssp HHHHHHHHHHHCTTSCEEEEE
T ss_pred HHHHHHHHHHHhCCCcEEEEe
Confidence 999999988873389999965
No 97
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}
Probab=76.39 E-value=2.5 Score=44.46 Aligned_cols=107 Identities=11% Similarity=0.101 Sum_probs=53.7
Q ss_pred hhHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCcccccccccC
Q 006816 107 QGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGPTSLVL 186 (630)
Q Consensus 107 ~~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~~~~~~ 186 (630)
.++.+|+|++++. .+.+++..|.|-. ..++.|..++..++|.++++.+..+.+...++....
T Consensus 75 ~a~~~a~Gaa~aG---------------~r~~~~ts~~G~~---~~~d~l~~aa~~~~P~Vi~~~~~~~~~~g~~~~~~~ 136 (395)
T 1yd7_A 75 ASIAAAIGASWAG---------------AKAMTATSGPGFS---LMQENIGYAVMTETPVVIVDVQRSGPSTGQPTLPAQ 136 (395)
T ss_dssp HHHHHHHHHHHTT---------------CCEEEEEETTHHH---HHTTTCC----CCCCEEEEEEC--------------
T ss_pred HHHHHHHHHHHhC---------------CcEEEEeCchHHH---HHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCcccch
Confidence 4566677777654 3456666677665 357778888888999666666665544221221111
Q ss_pred hhcHHHHHH---hCCCeEEEEeCCCCCHHHHHHHHHHH----HhcCCCcEEEEEeec
Q 006816 187 SEDISARFK---SLGWNTIMVENIHDNLSSFKEALMAA----ANETKKPTFIRVKKM 236 (630)
Q Consensus 187 ~~~~~~~~~---a~G~~~~~v~dG~~d~~~l~~al~~a----~~~~~~P~~i~~~t~ 236 (630)
...+..++. .+||.++.+ . ++++..+.+..| .+ .+.|+++...+.
T Consensus 137 sd~~~~~~~~~g~~g~~vl~p---~-~~qea~~l~~~A~~lA~~-~~~PVi~~~~~~ 188 (395)
T 1yd7_A 137 GDIMQAIWGTHGDHSLIVLSP---S-TVQEAFDFTIRAFNLSEK-YRTPVILLTDAE 188 (395)
T ss_dssp ------------CCCCEEECC---C-SHHHHHHHHHHHHHHHHH-HTSEEEEEECHH
T ss_pred hHHHHHHhccCCCcceEEEeC---C-CHHHHHHHHHHHHHHHHH-HCCCEEEEcchh
Confidence 122223333 357998887 5 777766554444 44 468999887654
No 98
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=74.10 E-value=6.7 Score=43.85 Aligned_cols=101 Identities=23% Similarity=0.177 Sum_probs=67.1
Q ss_pred hHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchhHHHH-HHHhHHcCCCcEEEEEECCCC-ccccccccc
Q 006816 108 GVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEA-AALAAHWKLNKLTLIYDDNHN-TIDGPTSLV 185 (630)
Q Consensus 108 ~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~ea-l~~a~~~~L~~li~i~~~N~~-~i~~~~~~~ 185 (630)
.+++|.|+|++- -+.++++..+.. + ..++- ++.++..++| ++++....++ +-++++...
T Consensus 376 ~~~~a~G~A~~G---------------~rp~~~~~~~F~-~--~a~dqi~~~~a~~~~p-vv~~~~~~g~~g~dG~tH~~ 436 (629)
T 2o1x_A 376 AVTTAAGMALQG---------------MRPVVAIYSTFL-Q--RAYDQVLHDVAIEHLN-VTFCIDRAGIVGADGATHNG 436 (629)
T ss_dssp HHHHHHHHHHTT---------------CEEEEEEEHHHH-G--GGHHHHHHTTTTTTCC-CEEEEESBBCCCTTCTTTCB
T ss_pred HHHHHHHHHHcC---------------CEEEEEecHHHH-H--HHHHHHHHHHhhcCCC-EEEEEECCccCCCCCcccCc
Confidence 445667777643 356666776653 2 55654 5668889999 6666666664 223444322
Q ss_pred ChhcHHHHHHhC-CCeEEEEeCCCCCHHHHHHHHHHHHhcCCCcEEEEEe
Q 006816 186 LSEDISARFKSL-GWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVK 234 (630)
Q Consensus 186 ~~~~~~~~~~a~-G~~~~~v~dG~~d~~~l~~al~~a~~~~~~P~~i~~~ 234 (630)
..|+ ..++.. ||.++.. . |..+...++..|.+ .++|++|...
T Consensus 437 -~~d~-a~~r~iP~l~v~~P---~-d~~e~~~~~~~a~~-~~~Pv~i~~~ 479 (629)
T 2o1x_A 437 -VFDL-SFLRSIPGVRIGLP---K-DAAELRGMLKYAQT-HDGPFAIRYP 479 (629)
T ss_dssp -CSHH-HHTTTSTTCEEECC---S-SHHHHHHHHHHHHH-SSSCEEEECC
T ss_pred -cHHH-HHHHccCCcEEEec---C-CHHHHHHHHHHHHh-CCCCEEEEec
Confidence 2343 455664 9999988 5 99999999999987 6899988653
No 99
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=69.93 E-value=17 Score=41.03 Aligned_cols=74 Identities=15% Similarity=0.197 Sum_probs=51.6
Q ss_pred HHHHHHhHHcCCCcEEEEEECCC--CcccccccccChhcHHHHHHhC-CCeEEEEeCCCCCHHHHHHHHHHHHhcCC--C
Q 006816 153 HEAAALAAHWKLNKLTLIYDDNH--NTIDGPTSLVLSEDISARFKSL-GWNTIMVENIHDNLSSFKEALMAAANETK--K 227 (630)
Q Consensus 153 ~eal~~a~~~~L~~li~i~~~N~--~~i~~~~~~~~~~~~~~~~~a~-G~~~~~v~dG~~d~~~l~~al~~a~~~~~--~ 227 (630)
..++..++..++| +++++...+ ++.++++. +..+++ ..++.. |+.++.. . |..++..+++.|.+..+ +
T Consensus 472 ~~~ir~~al~~lp-vv~v~thdg~gvG~dG~TH-q~ied~-a~lr~iPnl~V~~P---a-d~~e~~~~l~~Ai~~~~~~~ 544 (700)
T 3rim_A 472 RPAVRLAALMDID-TIYVWTHDSIGLGEDGPTH-QPIEHL-SALRAIPRLSVVRP---A-DANETAYAWRTILARRNGSG 544 (700)
T ss_dssp HHHHHHHHHHTCC-CEEEEECCSGGGCTTCTTT-SCSSHH-HHHHTSTTCEEECC---S-SHHHHHHHHHHHHTTTTCSS
T ss_pred HHHHHHhcCCCCC-EEEEEeCCCcccCCCCCcc-CChhHH-HHHhcCCCCEEEeC---C-CHHHHHHHHHHHHHccCCCC
Confidence 4457788899999 666664444 45566665 223444 456655 9999998 5 89999999998876334 6
Q ss_pred cEEEEE
Q 006816 228 PTFIRV 233 (630)
Q Consensus 228 P~~i~~ 233 (630)
|++|..
T Consensus 545 Pv~ir~ 550 (700)
T 3rim_A 545 PVGLIL 550 (700)
T ss_dssp CEEEEC
T ss_pred CEEEEe
Confidence 999864
No 100
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=65.01 E-value=9.3 Score=39.58 Aligned_cols=110 Identities=15% Similarity=0.107 Sum_probs=63.4
Q ss_pred ccccchHHHHHHHHHHHh----cCCCCceEeee-hHHHHHh-hHHHHHHhcccCCCeEEEEecCCCCCCCCCCCC-----
Q 006816 369 RYGVREHAMAGISNGVAL----HGGGLIPFAAT-FLIFSDY-MKNSIRLSALSHAGVIYILTHDSIGLGEDGPTH----- 437 (630)
Q Consensus 369 ~~gIaE~~~vg~a~GlA~----~G~~~~pv~~~-~~~F~~~-a~dqi~~~a~~~~pv~~v~~~~g~~~g~~G~tH----- 437 (630)
.+|.-++ .+++|.|+|+ .++..++|+.+ -..|.+- .++.+..++..++|+++++...+++. .+++.
T Consensus 142 ~~g~lG~-~l~~a~G~A~a~k~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~gi--~~~~~~~~~~ 218 (367)
T 1umd_A 142 VASPIAS-HVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNFYAI--SVDYRHQTHS 218 (367)
T ss_dssp CCSSTTT-THHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHTTCSEEEEEEECSEET--TEEHHHHCSS
T ss_pred CCchhhh-hhhHHHHHHHHHHHhCCCCeEEEEEcccccccCcHHHHHHHHHHhCcCEEEEEecCCeee--ccChhhccCC
Confidence 5555553 3355556554 34223334332 5677554 66668778889999999987776543 33321
Q ss_pred CChhhhHHhhcCCCcEEEecCChHHHHHHHHHHHH---cCCCcEEEEE
Q 006816 438 QPVEQLAGLRAVPRLLAFRPADGNETAGSYRVAIA---NRDVPSVIAL 482 (630)
Q Consensus 438 q~~~d~a~l~~iP~l~v~~P~d~~e~~~~l~~a~~---~~~~P~~ir~ 482 (630)
..+.+++-.-.+|.+.| --.|..++..+++.|++ ..++|++|-+
T Consensus 219 ~d~~~~a~a~G~~~~~V-dg~d~~av~~a~~~A~~~a~~~~gP~lIe~ 265 (367)
T 1umd_A 219 PTIADKAHAFGIPGYLV-DGMDVLASYYVVKEAVERARRGEGPSLVEL 265 (367)
T ss_dssp SCSGGGGGGTTSCEEEE-ETTCHHHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CCHHHHHHHcCCcEEEe-CCCCHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 12333333345676654 44566666666666654 2378999864
No 101
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=63.35 E-value=16 Score=38.41 Aligned_cols=101 Identities=15% Similarity=0.033 Sum_probs=58.6
Q ss_pred HHHHHHHhc----CCCCceEeee-hHHHHH-hhHHHHHHhcccCCCeEEEEecCCCCCCCCCCCC--C-Chhhh---HHh
Q 006816 379 GISNGVALH----GGGLIPFAAT-FLIFSD-YMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTH--Q-PVEQL---AGL 446 (630)
Q Consensus 379 g~a~GlA~~----G~~~~pv~~~-~~~F~~-~a~dqi~~~a~~~~pv~~v~~~~g~~~g~~G~tH--q-~~~d~---a~l 446 (630)
..|.|+|+. |...++|+.. -..|.+ ..++.+..++..++|+++++...+++.. ++++ . ...|+ +--
T Consensus 188 p~AvGaA~A~k~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~Vv~NN~~gi~--~~~~~~~~~~~d~a~~a~a 265 (407)
T 1qs0_A 188 VQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTALTFAHVYRAPVILNVVNNQWAIS--TFQAIAGGESTTFAGRGVG 265 (407)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHHTCCEEEEEEECSEETT--EEGGGGTTTTCCSTHHHHH
T ss_pred hHHHHHHHHHHHhCCCCEEEEEECCchhhcChHHHHHHHHHHHCcCEEEEEECCCccee--eccccccCCCCCHHHHHHH
Confidence 455666543 3113444432 456654 3566677778889999999877765532 2222 1 12232 333
Q ss_pred hcCCCcEEEecCChHHHHHHHHHHHHc---CCCcEEEEE
Q 006816 447 RAVPRLLAFRPADGNETAGSYRVAIAN---RDVPSVIAL 482 (630)
Q Consensus 447 ~~iP~l~v~~P~d~~e~~~~l~~a~~~---~~~P~~ir~ 482 (630)
-.+|+++| -=.|..++..+++.|++. .++|++|-+
T Consensus 266 ~G~~~~~V-dG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 303 (407)
T 1qs0_A 266 CGIASLRV-DGNDFVAVYAASRWAAERARRGLGPSLIEW 303 (407)
T ss_dssp TTCEEEEE-ETTCHHHHHHHHHHHHHHHHTTSCCEEEEE
T ss_pred cCCeEEEE-cCCCHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 35666554 233667788888888752 378999864
No 102
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=58.98 E-value=16 Score=37.79 Aligned_cols=103 Identities=17% Similarity=0.134 Sum_probs=59.1
Q ss_pred HHHHHHHHhc----CCCCceEeee--hHHHHH-hhHHHHHHhcccCCCeEEEEecCCCCCCCCCCCCCChhhhHH-hhcC
Q 006816 378 AGISNGVALH----GGGLIPFAAT--FLIFSD-YMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQLAG-LRAV 449 (630)
Q Consensus 378 vg~a~GlA~~----G~~~~pv~~~--~~~F~~-~a~dqi~~~a~~~~pv~~v~~~~g~~~g~~G~tHq~~~d~a~-l~~i 449 (630)
+..|.|+|+. |. -++++++ -..|.+ ..++.+..++..++|+++++...+++.+..-..+....|++- .-.+
T Consensus 146 lp~A~G~A~A~~~~~~-~~~vv~~~GDGa~~~G~~~Ealn~A~~~~lpvi~vv~NN~~g~~t~~~~~~~~~~~~~ra~g~ 224 (365)
T 2ozl_A 146 VPLGAGIALACKYNGK-DEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDFI 224 (365)
T ss_dssp HHHHHHHHHHHHHHTC-CCCEEEEEETTGGGCHHHHHHHHHHHHTTCCEEEEEEECSEETTEEHHHHCSCCCGGGTTTTS
T ss_pred hHHHHHHHHHHHhcCC-CceEEEEECchhhhccHHHHHHHHHHHHCcCEEEEEECCCcccCCCcccccCCCCHHHHhCCC
Confidence 3555665543 21 2334443 455554 356777778889999999987776653221000111122221 1246
Q ss_pred CCcEEEecCChHHHHHHHHHHHH---cCCCcEEEEE
Q 006816 450 PRLLAFRPADGNETAGSYRVAIA---NRDVPSVIAL 482 (630)
Q Consensus 450 P~l~v~~P~d~~e~~~~l~~a~~---~~~~P~~ir~ 482 (630)
|+++| -=-|..++..+++.|++ ..++|++|-+
T Consensus 225 p~~~V-dG~D~~av~~a~~~A~~~~r~~~gP~lIe~ 259 (365)
T 2ozl_A 225 PGLRV-DGMDILCVREATRFAAAYCRSGKGPILMEL 259 (365)
T ss_dssp CEEEE-ETTCHHHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CEEEE-eCCCHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 77665 33478888888888874 2378999854
No 103
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=56.36 E-value=30 Score=40.08 Aligned_cols=105 Identities=12% Similarity=0.137 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchh--HHHHHHHhHH----cCCCcEEEEEECCCCccccc
Q 006816 108 GVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGI--SHEAAALAAH----WKLNKLTLIYDDNHNTIDGP 181 (630)
Q Consensus 108 ~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~--~~eal~~a~~----~~L~~li~i~~~N~~~i~~~ 181 (630)
.++.|+|+|++. ++..+++-+-=|.|..+- .+.-+...++ .++| |++++...+.+ .++
T Consensus 596 ~vG~a~G~A~~G--------------~~~~~i~eaqf~dF~~~AQ~~~DQ~i~~~~~k~~~~~~-vvi~~p~G~~G-~Gp 659 (868)
T 2yic_A 596 AVGFEYGYSVGN--------------PDAMVLWEAQFGDFVNGAQSIIDEFISSGEAKWGQLSD-VVLLLPHGHEG-QGP 659 (868)
T ss_dssp HHHHHHHHHHHC--------------TTSEEEEECSSGGGGGGGHHHHHHTTTTHHHHHCCCCC-CEEEEECCCSS-SCT
T ss_pred HHHHHHHHHccC--------------CCCceEEEEehHHHHhhHHHHHHHHHHHHHHHhCCCCC-EEEEecCCCCC-CCh
Confidence 456788888876 455565555555565443 2333323332 2666 77777765543 555
Q ss_pred cccc-ChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhc-CCCcEEEE
Q 006816 182 TSLV-LSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANE-TKKPTFIR 232 (630)
Q Consensus 182 ~~~~-~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~-~~~P~~i~ 232 (630)
+... ..+++..+..--||.++.+ . |+.+....|+++... .++|++|.
T Consensus 660 ~Hs~~~~E~~l~l~~~pnm~V~~P---s-~p~~~~~lLr~a~~~~~~~Pvii~ 708 (868)
T 2yic_A 660 DHTSGRIERFLQLWAEGSMTIAMP---S-TPANYFHLLRRHGKDGIQRPLIVF 708 (868)
T ss_dssp TSSCCCHHHHHHHCCTTSCEEECC---C-SHHHHHHHHHHHHHSSCCCCEEEE
T ss_pred hhcCCcHHHHHhcCCCCCCEEEEe---C-CHHHHHHHHHHHHhcCCCCcEEEE
Confidence 4432 2445444444459999888 5 999999999876442 24898774
No 104
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=51.73 E-value=34 Score=39.94 Aligned_cols=103 Identities=13% Similarity=0.080 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCch--hHHHHHHHhH--H--cCCCcEEEEEECCCCccccc
Q 006816 108 GVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEG--ISHEAAALAA--H--WKLNKLTLIYDDNHNTIDGP 181 (630)
Q Consensus 108 ~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG--~~~eal~~a~--~--~~L~~li~i~~~N~~~i~~~ 181 (630)
.++.|.|+|++. +...+++-+-=|.|..| ..+.-+...+ . ++++ +++++.. ++.-.++
T Consensus 664 ~vg~a~G~A~~G--------------~~~lpv~e~qf~dF~~~AQra~DQii~~~~ak~~~~~~-vv~~l~~-G~~g~G~ 727 (933)
T 2jgd_A 664 VLAFEYGYATAE--------------PRTLTIWEAQFGDFANGAQVVIDQFISSGEQKWGRMCG-LVMLLPH-GYEGQGP 727 (933)
T ss_dssp HHHHHHHHHHHC--------------TTSEEEEEC-CGGGGGGGHHHHHHTTTTHHHHHCCCCC-CEEEEEC-CCSSSCT
T ss_pred HHHHHHHHHhcC--------------CCCCCEEEEEEhhhhcccHHHHHHHHHHHHHHHccCCC-EEEEEeC-CCCCCCc
Confidence 456777777765 33334332233444444 4455454333 3 3666 7777775 4543444
Q ss_pred ccccChhcHHHHHHh---CCCeEEEEeCCCCCHHHHHHHHHHH-HhcCCCcEEEE
Q 006816 182 TSLVLSEDISARFKS---LGWNTIMVENIHDNLSSFKEALMAA-ANETKKPTFIR 232 (630)
Q Consensus 182 ~~~~~~~~~~~~~~a---~G~~~~~v~dG~~d~~~l~~al~~a-~~~~~~P~~i~ 232 (630)
+... ..+..++.- -||.++.+ . |+.+....|+++ ....++|++|.
T Consensus 728 ~Hss--~~~E~~l~~~~~pnm~V~~P---s-t~~e~~~lLr~a~~~~~~~Pvii~ 776 (933)
T 2jgd_A 728 EHSS--ARLERYLQLCAEQNMQVCVP---S-TPAQVYHMLRRQALRGMRRPLVVM 776 (933)
T ss_dssp TSSC--CCHHHHHHTCCTTCCEEECC---C-SHHHHHHHHHHHHHSSCCCCEEEE
T ss_pred cccc--chHHHHHHHhCCCCeEEEec---C-CHHHHHHHHHHHHHhcCCCcEEEE
Confidence 4322 223444543 48998888 5 999999999987 34137999884
No 105
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=45.85 E-value=52 Score=39.17 Aligned_cols=105 Identities=12% Similarity=0.125 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHHHHHhhhhCCCCCccCCceEEEEEcccccCchh--HHHHHHHhH----HcCCCcEEEEEECCCCccccc
Q 006816 108 GVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGI--SHEAAALAA----HWKLNKLTLIYDDNHNTIDGP 181 (630)
Q Consensus 108 ~l~~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~--~~eal~~a~----~~~L~~li~i~~~N~~~i~~~ 181 (630)
.++.|.|+|++. ++.++++-+-=|.|..+- .+.-+-..+ ..++| |++.+...+.+ .++
T Consensus 841 ~vg~a~G~A~~G--------------~~~~~i~Eaqf~dF~~~aQ~~~DQ~i~~~~~k~~~~~~-vv~~lp~G~~G-~G~ 904 (1113)
T 2xt6_A 841 AVGFEYGYSVGN--------------PDAMVLWEAQFGDFVNGAQSIIDEFISSGEAKWGQLSD-VVLLLPHGHEG-QGP 904 (1113)
T ss_dssp HHHHHHHHHHHC--------------TTSEEEEECSSGGGGGGGHHHHHHTTTTHHHHHCCCCC-CEEEEECCCSS-SCT
T ss_pred HHHHHHHHHhcC--------------CCCceEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCC-EEEEeCCCCCC-CCh
Confidence 557788888866 555665555556665543 233332222 22666 77777765533 555
Q ss_pred ccccC-hhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHhc-CCCcEEEE
Q 006816 182 TSLVL-SEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANE-TKKPTFIR 232 (630)
Q Consensus 182 ~~~~~-~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~~-~~~P~~i~ 232 (630)
+.... .+++..+..--||.++.+ . |+.+....|+++... .++|++|.
T Consensus 905 ~Hs~~~~E~~l~l~~~pnm~V~~P---s-~~~~~~~lLr~a~~~~~~~Pvii~ 953 (1113)
T 2xt6_A 905 DHTSGRIERFLQLWAEGSMTIAMP---S-TPANYFHLLRRHGKDGIQRPLIVF 953 (1113)
T ss_dssp TSSCCCHHHHHHHCCTTSCEEECC---S-SHHHHHHHHHHHHHSSCCCCEEEE
T ss_pred hhhcccHHHHHhcCCCCCcEEEec---C-CHHHHHHHHHHHHhccCCCCEEEE
Confidence 44322 344443333349999888 5 999999999876542 24899874
No 106
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=42.98 E-value=1.1e+02 Score=27.90 Aligned_cols=86 Identities=17% Similarity=0.028 Sum_probs=49.5
Q ss_pred CceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCC-----------Cccccccc----ccChhcHHHHHHhCCC
Q 006816 135 DHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNH-----------NTIDGPTS----LVLSEDISARFKSLGW 199 (630)
Q Consensus 135 ~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~-----------~~i~~~~~----~~~~~~~~~~~~a~G~ 199 (630)
..+++.++.||.-+.+...+++..+...++...++-+-+.. +.-+...+ ......+.++++.-|-
T Consensus 111 ~~~~ivllTDG~~~~~~~~~~~~~~~~~~i~v~~igig~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~L~~iA~~~gG 190 (218)
T 3ibs_A 111 VGRAIIVITDGENHEGGAVEAAKAAAEKGIQVSVLGVGMPEGAPIPVEGTNDYRRDREGNVIVTRLNEGMCQEIAKDGKG 190 (218)
T ss_dssp CCEEEEEEECCTTCCSCHHHHHHHHHTTTEEEEEEEESCTTCEECBCTTSSCBCBCTTSCBCEECCCHHHHHHHHHHTEE
T ss_pred CCcEEEEEcCCCCCCCcHHHHHHHHHhcCCEEEEEEecCCCCCcccccCCCceeEcCCCCEeEecCCHHHHHHHHHhcCC
Confidence 56899999999998876677777777777653333332210 00000000 1122346777888888
Q ss_pred eEEEEeC-CCCCHHHHHHHHHHH
Q 006816 200 NTIMVEN-IHDNLSSFKEALMAA 221 (630)
Q Consensus 200 ~~~~v~d-G~~d~~~l~~al~~a 221 (630)
.++.+.| .. +...+.+.+.+.
T Consensus 191 ~~~~~~~~~~-~~~~~~~~i~~l 212 (218)
T 3ibs_A 191 IYVRVDNSNS-AQKAISQEISKM 212 (218)
T ss_dssp EEEEECSSSH-HHHHHHHHHHHH
T ss_pred EEEECCCChH-HHHHHHHHHHHh
Confidence 8988833 22 344555555443
No 107
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=39.61 E-value=1.2e+02 Score=35.00 Aligned_cols=86 Identities=10% Similarity=0.020 Sum_probs=48.5
Q ss_pred cccccchHHHHHHHHHHHhc-----------CCCCceEeee-hHHHHH-hhHHHHHHhcccCCC-eEEEEecCCCCCCCC
Q 006816 368 IRYGVREHAMAGISNGVALH-----------GGGLIPFAAT-FLIFSD-YMKNSIRLSALSHAG-VIYILTHDSIGLGED 433 (630)
Q Consensus 368 ~~~gIaE~~~vg~a~GlA~~-----------G~~~~pv~~~-~~~F~~-~a~dqi~~~a~~~~p-v~~v~~~~g~~~g~~ 433 (630)
|.+|.. ..-++.|.|+|+. +...+.++.+ -..+.. .+++.+.+++..+++ +++|....+.+ -+
T Consensus 189 ~~tG~~-G~g~s~AiG~A~a~~~l~~~~~~~~~~~~v~aviGDG~l~eG~~~EAl~~A~~~~L~nli~Vvn~N~~s--i~ 265 (886)
T 2qtc_A 189 FPTVSM-GLGPIGAIYQAKFLKYLEHRGLKDTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQR--LD 265 (886)
T ss_dssp CCCCST-THHHHHHHHHHHHHHHHHHTTSCCCTTCCEEEEEETGGGGSHHHHTTHHHHHHTTCTTEEEEEEECSBC--SS
T ss_pred cccccc-CccHHHHHHHHHHhhhhcccccccCCCCEEEEEECCccccccchHHHHHHHHHcCCCcEEEEEECCCcc--cC
Confidence 344443 2334566677652 2113444433 445443 578888888888875 88888666654 35
Q ss_pred CCCCC---ChhhhHHhhcCCCcEEEe
Q 006816 434 GPTHQ---PVEQLAGLRAVPRLLAFR 456 (630)
Q Consensus 434 G~tHq---~~~d~a~l~~iP~l~v~~ 456 (630)
|++-- ..+++.-+..-.|+.++.
T Consensus 266 ~~v~~~~~~~~~l~~~~~~~G~~~~~ 291 (886)
T 2qtc_A 266 GPVTGNGKIINELEGIFEGAGWNVIK 291 (886)
T ss_dssp SBSCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CCccccccccHHHHHHHHhCCCCEEE
Confidence 66542 245554444445877764
No 108
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=38.79 E-value=21 Score=33.09 Aligned_cols=31 Identities=29% Similarity=0.432 Sum_probs=25.2
Q ss_pred CcEEEEEeCchHHHHHHHHHHHHhcCCceEEEEc
Q 006816 515 PEIILIGTGTELSLCEGTAKTLRQEGRRVRVVSL 548 (630)
Q Consensus 515 ~dvtiva~G~~v~~a~~aa~~L~~~gi~~~Vi~~ 548 (630)
-||+||+.|.. -+-+|-.|++.|+++.|++-
T Consensus 3 ~dV~IIGaGpa---GL~aA~~La~~G~~V~v~Ek 33 (336)
T 3kkj_A 3 VPIAIIGTGIA---GLSAAQALTAAGHQVHLFDK 33 (336)
T ss_dssp CCEEEECCSHH---HHHHHHHHHHTTCCEEEECS
T ss_pred CCEEEECcCHH---HHHHHHHHHHCCCCEEEEEC
Confidence 58999999963 34467778889999999984
No 109
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=37.89 E-value=86 Score=25.22 Aligned_cols=71 Identities=20% Similarity=0.253 Sum_probs=51.5
Q ss_pred CceEEEEEcccccCchhHHHHHHHhHHcCCCcEEEEEECCCCcccccccccChhcHHHHHHhCCCeEEEEeCCCCCHHHH
Q 006816 135 DHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGPTSLVLSEDISARFKSLGWNTIMVENIHDNLSSF 214 (630)
Q Consensus 135 ~~~v~~~~GDG~~~eG~~~eal~~a~~~~L~~li~i~~~N~~~i~~~~~~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l 214 (630)
...|++++.|-+..| .|+.+....+...+++|+|... ..-+.+..-.+.-|+++..| . .++++
T Consensus 51 ativvvvvddkewae----kairfvkslgaqvliiiydqdq---------nrleefsrevrrrgfevrtv---t-spddf 113 (134)
T 2l69_A 51 ATIVVVVVDDKEWAE----KAIRFVKSLGAQVLIIIYDQDQ---------NRLEEFSREVRRRGFEVRTV---T-SPDDF 113 (134)
T ss_dssp CEEEEEECSSHHHHH----HHHHHHHHHCCCCEEEEECSCH---------HHHHHHHHHHHHTTCCEEEE---S-SHHHH
T ss_pred CeEEEEEEccHHHHH----HHHHHHHhcCCeEEEEEEeCch---------hHHHHHHHHHHhcCceEEEe---c-ChHHH
Confidence 357888888877754 3788888889887888776431 11245666677889999999 4 89988
Q ss_pred HHHHHHHH
Q 006816 215 KEALMAAA 222 (630)
Q Consensus 215 ~~al~~a~ 222 (630)
.+.+++..
T Consensus 114 kkslerli 121 (134)
T 2l69_A 114 KKSLERLI 121 (134)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887653
No 110
>2fvt_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: c.103.1.1
Probab=37.37 E-value=14 Score=32.46 Aligned_cols=35 Identities=14% Similarity=0.208 Sum_probs=26.2
Q ss_pred CcEEEEEeCchHH-HHHHHHHHHHhcCCceEEEEcc
Q 006816 515 PEIILIGTGTELS-LCEGTAKTLRQEGRRVRVVSLV 549 (630)
Q Consensus 515 ~dvtiva~G~~v~-~a~~aa~~L~~~gi~~~Vi~~~ 549 (630)
.|+.||++|.... .--+..+.|++.||.+++.|-+
T Consensus 68 pevliiGTG~~~~~l~p~l~~~l~~~GI~vE~M~T~ 103 (135)
T 2fvt_A 68 IDTLIVGTGADVWIAPRQLREALRGVNVVLDTMQTG 103 (135)
T ss_dssp CSEEEEECTTSCCCCCHHHHHHHHTTTCEEEEECHH
T ss_pred CCEEEEcCCCCCCcCCHHHHHHHHHcCCEEEEeCHH
Confidence 8999999998642 2234556788999999988643
No 111
>2fi9_A Outer membrane protein; bartonella hense protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bartonella henselae} SCOP: c.103.1.1
Probab=37.04 E-value=14 Score=32.17 Aligned_cols=34 Identities=35% Similarity=0.390 Sum_probs=26.1
Q ss_pred CcEEEEEeCchH-HHHHHHHHHHHhcCCceEEEEc
Q 006816 515 PEIILIGTGTEL-SLCEGTAKTLRQEGRRVRVVSL 548 (630)
Q Consensus 515 ~dvtiva~G~~v-~~a~~aa~~L~~~gi~~~Vi~~ 548 (630)
.|+.||++|... ..--+..+.|++.||.+++.|-
T Consensus 69 pevliiGtG~~~~~l~p~~~~~l~~~GI~vE~m~T 103 (128)
T 2fi9_A 69 IEVLLIGTGVELLRLPEELRVLLWEKRISSDTMST 103 (128)
T ss_dssp CSEEEEECTTSCCCCCHHHHHHHHHTTCEEEEECH
T ss_pred CCEEEECCCCCCCCCCHHHHHHHHHcCCEEEEeCH
Confidence 799999999965 2223456678899999998864
No 112
>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A
Probab=35.21 E-value=18 Score=31.06 Aligned_cols=34 Identities=26% Similarity=0.439 Sum_probs=26.5
Q ss_pred CcEEEEEeCchHH--HHHHHHHHHHhcCCceEEEEc
Q 006816 515 PEIILIGTGTELS--LCEGTAKTLRQEGRRVRVVSL 548 (630)
Q Consensus 515 ~dvtiva~G~~v~--~a~~aa~~L~~~gi~~~Vi~~ 548 (630)
.|+.||++|.... .--+..+.|+++||.+++.|-
T Consensus 62 ~evliiGtG~~~~~~~~~~~~~~l~~~gI~ve~m~T 97 (122)
T 2ab1_A 62 VQTLVIGRGMSEALKVPSSTVEYLKKHGIDVRVLQT 97 (122)
T ss_dssp CSEEEEEECSSCCSCCCHHHHHHHHHTTCEEEEECH
T ss_pred CCEEEECCCCCCccCCCHHHHHHHHHcCCEEEEeCH
Confidence 8999999999653 344556778999999988753
No 113
>2gm2_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Xanthomonas campestris PV}
Probab=33.63 E-value=17 Score=31.70 Aligned_cols=34 Identities=21% Similarity=0.346 Sum_probs=25.9
Q ss_pred CcEEEEEeCchHH-HHHHHHHHHHhcCCceEEEEc
Q 006816 515 PEIILIGTGTELS-LCEGTAKTLRQEGRRVRVVSL 548 (630)
Q Consensus 515 ~dvtiva~G~~v~-~a~~aa~~L~~~gi~~~Vi~~ 548 (630)
.|+.||++|.... .--+..+.|++.||.+++.|-
T Consensus 65 pevliiGTG~~~~~l~p~~~~~l~~~GI~vE~m~T 99 (132)
T 2gm2_A 65 PAVILLGTGERQQFPSTDVLAACLTRGIGLEAMTN 99 (132)
T ss_dssp CSEEEEECTTSCCCCCHHHHHHHHHHTCEEEEECH
T ss_pred CCEEEECCCCCCCcCCHHHHHHHHHcCCEEEEeCH
Confidence 8999999999652 223455678889999998864
No 114
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=29.70 E-value=60 Score=26.69 Aligned_cols=36 Identities=11% Similarity=0.193 Sum_probs=31.8
Q ss_pred CcEEEEEeC----chHHHHHHHHHHHHhcCCceEEEEccc
Q 006816 515 PEIILIGTG----TELSLCEGTAKTLRQEGRRVRVVSLVC 550 (630)
Q Consensus 515 ~dvtiva~G----~~v~~a~~aa~~L~~~gi~~~Vi~~~~ 550 (630)
..|+|.+.+ +..+.+.+|.+.|.+.|+..+.+|+..
T Consensus 18 ~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~ 57 (109)
T 3ipz_A 18 EKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILE 57 (109)
T ss_dssp SSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGG
T ss_pred CCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCC
Confidence 679999998 478899999999999999999999864
No 115
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=28.76 E-value=82 Score=25.24 Aligned_cols=35 Identities=11% Similarity=0.093 Sum_probs=28.2
Q ss_pred CcEEEEEeCchHHHHHHHHHHHHhcCCceEEEEccc
Q 006816 515 PEIILIGTGTELSLCEGTAKTLRQEGRRVRVVSLVC 550 (630)
Q Consensus 515 ~dvtiva~G~~v~~a~~aa~~L~~~gi~~~Vi~~~~ 550 (630)
.+|+|.+. +....|.+|.+.|++.||..+.+|+..
T Consensus 4 a~I~vYs~-~~Cp~C~~aK~~L~~~gi~y~~idi~~ 38 (92)
T 2lqo_A 4 AALTIYTT-SWCGYCLRLKTALTANRIAYDEVDIEH 38 (92)
T ss_dssp SCEEEEEC-TTCSSHHHHHHHHHHTTCCCEEEETTT
T ss_pred CcEEEEcC-CCCHhHHHHHHHHHhcCCceEEEEcCC
Confidence 46888775 445678888889999999999999864
No 116
>3cpk_A Uncharacterized protein Q7W7N7_borpa; BPP2477, BER31, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Bordetella parapertussis 12822} PDB: 2k2e_A
Probab=27.74 E-value=25 Score=31.32 Aligned_cols=34 Identities=29% Similarity=0.489 Sum_probs=26.1
Q ss_pred CcEEEEEeCchHH-HHHHHHHHHHhcCCceEEEEc
Q 006816 515 PEIILIGTGTELS-LCEGTAKTLRQEGRRVRVVSL 548 (630)
Q Consensus 515 ~dvtiva~G~~v~-~a~~aa~~L~~~gi~~~Vi~~ 548 (630)
.++.||++|...+ .--+..+.|++.||.+++.|-
T Consensus 89 pEvliiGTG~~~~~l~p~~~~~L~~~GIgvE~M~T 123 (150)
T 3cpk_A 89 PEVLLVGTGRRQHLLGPEQVRPLLAMGVGVEAMDT 123 (150)
T ss_dssp CSEEEEECTTSCCCCCHHHHHHHHTTTCEEEEECH
T ss_pred CCEEEEcCCCCCCCCCHHHHHHHHHcCCEEEEeCH
Confidence 7999999999652 233456778889999998863
No 117
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=26.94 E-value=49 Score=27.11 Aligned_cols=36 Identities=11% Similarity=0.252 Sum_probs=31.0
Q ss_pred CcEEEEEeC----chHHHHHHHHHHHHhcCCceEEEEccc
Q 006816 515 PEIILIGTG----TELSLCEGTAKTLRQEGRRVRVVSLVC 550 (630)
Q Consensus 515 ~dvtiva~G----~~v~~a~~aa~~L~~~gi~~~Vi~~~~ 550 (630)
.+|+|.+.| +..+.+.+|.+.|++.|+..+.+|+..
T Consensus 15 ~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~ 54 (109)
T 1wik_A 15 ASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILE 54 (109)
T ss_dssp SSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSS
T ss_pred CCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCC
Confidence 579999988 566788889999999999999999875
No 118
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=26.82 E-value=64 Score=27.99 Aligned_cols=36 Identities=19% Similarity=0.292 Sum_probs=31.4
Q ss_pred CcEEEEEeC----chHHHHHHHHHHHHhcCCceEEEEccc
Q 006816 515 PEIILIGTG----TELSLCEGTAKTLRQEGRRVRVVSLVC 550 (630)
Q Consensus 515 ~dvtiva~G----~~v~~a~~aa~~L~~~gi~~~Vi~~~~ 550 (630)
.+|+|.++| +....|.+|.+.|.+.|+..+.+|+..
T Consensus 35 ~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~ 74 (135)
T 2wci_A 35 NPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQ 74 (135)
T ss_dssp CSEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGG
T ss_pred CCEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCC
Confidence 579998888 677889999999999999999999875
No 119
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Probab=26.04 E-value=4.2e+02 Score=30.31 Aligned_cols=82 Identities=9% Similarity=-0.002 Sum_probs=50.5
Q ss_pred cccCc--hhHHHH----HHHh-HH----cCCCcEEEEEECCCCccc--ccccccChhcHHHHHH-----h-CCCeEEEEe
Q 006816 145 GCAME--GISHEA----AALA-AH----WKLNKLTLIYDDNHNTID--GPTSLVLSEDISARFK-----S-LGWNTIMVE 205 (630)
Q Consensus 145 G~~~e--G~~~ea----l~~a-~~----~~L~~li~i~~~N~~~i~--~~~~~~~~~~~~~~~~-----a-~G~~~~~v~ 205 (630)
++|.. ...++. +..+ +. ++++++.+|.-..+++.. +++. ....+...+. + -++.++..
T Consensus 522 atFl~~~~~a~~q~akwiR~a~a~~~wr~~~~~v~~v~Th~si~~GeDGpTH--Q~~e~~d~l~~~r~~~iPn~~V~~P- 598 (845)
T 3ahc_A 522 ESFVHVIDSMLNQHAKWLEATVREIPWRKPISSVNLLVSSHVWRQDHNGFSH--QDPGVTSLLINKTFNNDHVTNIYFA- 598 (845)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHCTTSCCCBCEEEEEESCGGGCTTTCGGG--CCCTHHHHHGGGCCTTCCCEEEEEC-
T ss_pred hhhhchhhhHHHHHHHHHHhhHHhhhhcccCCceEEEEeCCceeecCCCCCC--CCcHHHHHHHHhhccCCCCeEEEeC-
Confidence 66764 455666 5566 33 467678888888877653 4443 2222333333 3 47888888
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCcEEEE
Q 006816 206 NIHDNLSSFKEALMAAANETKKPTFIR 232 (630)
Q Consensus 206 dG~~d~~~l~~al~~a~~~~~~P~~i~ 232 (630)
- |..++..+++.+.+..+.|+++.
T Consensus 599 --a-Danet~~a~~~al~~~~~~~v~v 622 (845)
T 3ahc_A 599 --T-DANMLLAISEKCFKSTNKINAIF 622 (845)
T ss_dssp --C-SHHHHHHHHHHHHHCBSCEEEEE
T ss_pred --C-CHHHHHHHHHHHHHcCCCeEEEE
Confidence 4 77889999998877344555554
No 120
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=25.12 E-value=81 Score=26.07 Aligned_cols=36 Identities=8% Similarity=0.184 Sum_probs=31.2
Q ss_pred CcEEEEEeC----chHHHHHHHHHHHHhcCCceEEEEccc
Q 006816 515 PEIILIGTG----TELSLCEGTAKTLRQEGRRVRVVSLVC 550 (630)
Q Consensus 515 ~dvtiva~G----~~v~~a~~aa~~L~~~gi~~~Vi~~~~ 550 (630)
..|+|.+-| +..+.|.+|.+.|++.|+..+.+|+..
T Consensus 16 ~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~ 55 (111)
T 3zyw_A 16 APCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFS 55 (111)
T ss_dssp SSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGG
T ss_pred CCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcC
Confidence 679999887 456889999999999999999999875
No 121
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=23.89 E-value=2.1e+02 Score=25.87 Aligned_cols=57 Identities=11% Similarity=-0.059 Sum_probs=32.9
Q ss_pred CcEEEEEeCc-hHHHHHHHHHHHHhcCCceEEEEcccccccCcccHHHHhccCCCCCee
Q 006816 515 PEIILIGTGT-ELSLCEGTAKTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLPSRVVK 572 (630)
Q Consensus 515 ~dvtiva~G~-~v~~a~~aa~~L~~~gi~~~Vi~~~~i~pld~~~~~~~~~v~~~~~~~ 572 (630)
+.|.||.-|. -...+.+|++.|++-|+..+|--+ ++--...+..+|.++....+.++
T Consensus 12 ~~V~IimGS~SD~~v~~~a~~~L~~~Gi~~dv~V~-SaHR~p~~l~~~~~~a~~~g~~V 69 (170)
T 1xmp_A 12 SLVGVIMGSTSDWETMKYACDILDELNIPYEKKVV-SAHRTPDYMFEYAETARERGLKV 69 (170)
T ss_dssp CSEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEEC-CTTTSHHHHHHHHHHTTTTTCCE
T ss_pred CcEEEEECcHHHHHHHHHHHHHHHHcCCCEEEEEE-eccCCHHHHHHHHHHHHhCCCcE
Confidence 6777776444 358888999999988988553322 22222333344444433344455
No 122
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=23.62 E-value=60 Score=27.60 Aligned_cols=32 Identities=22% Similarity=0.317 Sum_probs=23.5
Q ss_pred eCchHHHHHHHHHHHHhcCCceEEEEcccccc
Q 006816 522 TGTELSLCEGTAKTLRQEGRRVRVVSLVCWRL 553 (630)
Q Consensus 522 ~G~~v~~a~~aa~~L~~~gi~~~Vi~~~~i~p 553 (630)
||+.-..|...++.|++.|++++++|+....+
T Consensus 9 tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~ 40 (138)
T 5nul_A 9 TGNTEKMAELIAKGIIESGKDVNTINVSDVNI 40 (138)
T ss_dssp SSHHHHHHHHHHHHHHHTTCCCEEEEGGGCCH
T ss_pred CchHHHHHHHHHHHHHHCCCeEEEEEhhhCCH
Confidence 34455666667777878899999999877643
No 123
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=23.48 E-value=2.4e+02 Score=24.63 Aligned_cols=55 Identities=11% Similarity=0.165 Sum_probs=38.1
Q ss_pred EEEEEECCCCccccccc-----ccChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHh
Q 006816 167 LTLIYDDNHNTIDGPTS-----LVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAAN 223 (630)
Q Consensus 167 li~i~~~N~~~i~~~~~-----~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~ 223 (630)
+.+|+||..+.-..... ......+.+.|+.+|+++....| - +..++.+.+++..+
T Consensus 18 ~alIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~~~d-l-t~~em~~~l~~~~~ 77 (146)
T 2dko_A 18 LCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKND-L-TREEIVELMRDVSK 77 (146)
T ss_dssp EEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEEEEEES-C-CHHHHHHHHHHHHH
T ss_pred EEEEEeccccCCCCCcccCCCCHHHHHHHHHHHHHCCCEEEEeeC-C-CHHHHHHHHHHHHH
Confidence 77888887775432111 11245688899999999887734 4 78889998887644
No 124
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=22.85 E-value=2.6e+02 Score=27.16 Aligned_cols=55 Identities=22% Similarity=0.378 Sum_probs=39.1
Q ss_pred EEEEEECCCCccccccc----ccChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHh
Q 006816 167 LTLIYDDNHNTIDGPTS----LVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAAN 223 (630)
Q Consensus 167 li~i~~~N~~~i~~~~~----~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~ 223 (630)
+.+|++|..|.-..... ......+.+.|+.+|+++....| - +..++.+++++..+
T Consensus 34 ~aLIInn~~f~~~~l~~R~g~~~Da~~L~~~f~~LGF~V~~~~d-l-t~~em~~~l~~~~~ 92 (272)
T 1m72_A 34 MAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVTVFPN-L-KSEEINKFIQQTAE 92 (272)
T ss_dssp EEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEEEEEES-C-CHHHHHHHHHHHHT
T ss_pred EEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEEEEecC-c-CHHHHHHHHHHHHH
Confidence 77888888776321111 12245688999999999988745 4 78899999987754
No 125
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=22.58 E-value=79 Score=27.96 Aligned_cols=36 Identities=22% Similarity=0.120 Sum_probs=24.9
Q ss_pred CcEEEEEeCch----HHHHHHHHHHHHhcCCceEEEEcccc
Q 006816 515 PEIILIGTGTE----LSLCEGTAKTLRQEGRRVRVVSLVCW 551 (630)
Q Consensus 515 ~dvtiva~G~~----v~~a~~aa~~L~~~gi~~~Vi~~~~i 551 (630)
+.++| .|+++ -..|..+++.|++.|++++++|+...
T Consensus 5 ~kv~I-vY~S~~GnT~~iA~~ia~~l~~~g~~v~~~~~~~~ 44 (159)
T 3fni_A 5 TSIGV-FYVSEYGYSDRLAQAIINGITKTGVGVDVVDLGAA 44 (159)
T ss_dssp CEEEE-EECTTSTTHHHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred CEEEE-EEECCChHHHHHHHHHHHHHHHCCCeEEEEECcCc
Confidence 34544 45554 45566667777778999999999865
No 126
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=22.43 E-value=2.8e+02 Score=26.55 Aligned_cols=55 Identities=11% Similarity=0.165 Sum_probs=38.9
Q ss_pred EEEEEECCCCccccccc-----ccChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHh
Q 006816 167 LTLIYDDNHNTIDGPTS-----LVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAAN 223 (630)
Q Consensus 167 li~i~~~N~~~i~~~~~-----~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~ 223 (630)
+.+|++|-.|.-..... ......+.+.|+.+|+++....| - +..++.+++++..+
T Consensus 18 ~aLIInn~~f~~~~~l~~r~g~~~D~~~l~~~f~~LgF~V~~~~d-l-t~~em~~~l~~~~~ 77 (250)
T 2j32_A 18 LCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKND-L-TREEIVELMRDVSK 77 (250)
T ss_dssp EEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEEEEEES-C-CHHHHHHHHHHHHT
T ss_pred EEEEEechhcCCCCCCcCCCCCHHHHHHHHHHHHHCCCEEEEEeC-C-CHHHHHHHHHHHHH
Confidence 77788887775431111 11245688999999999988745 4 78899999988754
No 127
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=22.24 E-value=2.3e+02 Score=25.70 Aligned_cols=57 Identities=9% Similarity=-0.013 Sum_probs=33.4
Q ss_pred CcEEEEEeCch-HHHHHHHHHHHHhcCCceEEEEcccccccCcccHHHHhccCCCCCee
Q 006816 515 PEIILIGTGTE-LSLCEGTAKTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLPSRVVK 572 (630)
Q Consensus 515 ~dvtiva~G~~-v~~a~~aa~~L~~~gi~~~Vi~~~~i~pld~~~~~~~~~v~~~~~~~ 572 (630)
+.|.||.-|.. ...+.+|++.|++-|+..+|--+. +--......+|.+.....+.++
T Consensus 13 ~~V~IimGS~SD~~v~~~a~~~L~~~Gi~~ev~V~S-aHR~p~~~~~~~~~a~~~g~~V 70 (174)
T 3kuu_A 13 VKIAIVMGSKSDWATMQFAADVLTTLNVPFHVEVVS-AHRTPDRLFSFAEQAEANGLHV 70 (174)
T ss_dssp CCEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECC-TTTCHHHHHHHHHHTTTTTCSE
T ss_pred CcEEEEECcHHHHHHHHHHHHHHHHcCCCEEEEEEc-ccCCHHHHHHHHHHHHhCCCcE
Confidence 56777765543 688899999999989886543322 2223333344434433344455
No 128
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Probab=21.01 E-value=2.9e+02 Score=26.56 Aligned_cols=55 Identities=15% Similarity=0.299 Sum_probs=37.0
Q ss_pred EEEEEECCCCcccc---cc-cccChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHh
Q 006816 167 LTLIYDDNHNTIDG---PT-SLVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAAN 223 (630)
Q Consensus 167 li~i~~~N~~~i~~---~~-~~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~ 223 (630)
+.+|++|..|.... .. .......+.+.|+.+|+++....| - +..++.+++++..+
T Consensus 22 ~aLIInn~~f~~~~l~~R~G~~~D~~~L~~~f~~LGF~V~~~~d-l-t~~em~~~l~~~~~ 80 (259)
T 3sir_A 22 MALIFNHEHFEVPTLKSRAGTNVDCENLTRVLKQLDFEVTVYKD-C-RYKDILRTIEYSAS 80 (259)
T ss_dssp EEEEEEECCC-----------CCHHHHHHHHHHHTTCEEEEEEE-C-SHHHHHHHHHHHHT
T ss_pred EEEEEeccccCCCCCCCCCCcHHHHHHHHHHHHHCCCEEEEEeC-C-CHHHHHHHHHHHHH
Confidence 67788887775321 11 122346789999999999988744 4 78899999988654
No 129
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=20.80 E-value=2.1e+02 Score=25.99 Aligned_cols=55 Identities=20% Similarity=0.173 Sum_probs=37.7
Q ss_pred cEEEEEECCCCccccccc--ccChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHH
Q 006816 166 KLTLIYDDNHNTIDGPTS--LVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAA 222 (630)
Q Consensus 166 ~li~i~~~N~~~i~~~~~--~~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~ 222 (630)
.+.+|++|..|.-..+.. ......+.+.|+.+|+++....| - +..++.+++++..
T Consensus 44 g~ALIInn~~f~~~~~R~G~~~Da~~L~~~f~~LgF~V~~~~d-l-t~~em~~~l~~f~ 100 (178)
T 2h54_A 44 RLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVDVKKN-L-TASDMTTELEAFA 100 (178)
T ss_dssp CEEEEEECCCCSSSCCCTTHHHHHHHHHHHHHHTTCEEEEEES-C-CHHHHHHHHHHHH
T ss_pred CEEEEEehhhcCCCccCCCCHHHHHHHHHHHHHCCCEEEEecC-C-CHHHHHHHHHHHH
Confidence 377888888774211110 11235688999999999988744 4 7889999998753
No 130
>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A
Probab=20.71 E-value=4.9e+02 Score=25.30 Aligned_cols=56 Identities=11% Similarity=0.167 Sum_probs=39.7
Q ss_pred cEEEEEECCCCcccccccc-----cChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHh
Q 006816 166 KLTLIYDDNHNTIDGPTSL-----VLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAAN 223 (630)
Q Consensus 166 ~li~i~~~N~~~i~~~~~~-----~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~ 223 (630)
-+.+|++|..|........ .....+.+.|+.+|+++....| - +..++.++|++..+
T Consensus 45 g~aLIInN~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~~~~d-l-t~~em~~~l~~f~~ 105 (277)
T 4ehd_A 45 GLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKND-L-TREEIVELMRDVSK 105 (277)
T ss_dssp EEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEEEEEES-C-CHHHHHHHHHHHHT
T ss_pred CEEEEEEchhcCCcCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecC-C-CHHHHHHHHHHHHh
Confidence 3788888888764321111 1245688999999999988745 4 78899999988754
No 131
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=20.37 E-value=2.8e+02 Score=25.20 Aligned_cols=55 Identities=11% Similarity=0.220 Sum_probs=38.8
Q ss_pred EEEEEECCCCcccccccc-----cChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHh
Q 006816 167 LTLIYDDNHNTIDGPTSL-----VLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAAN 223 (630)
Q Consensus 167 li~i~~~N~~~i~~~~~~-----~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~ 223 (630)
+.+|+||-.+........ .....+.+.|+.+|+++....| - +..++.+.++++.+
T Consensus 46 ~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LGF~V~~~~d-l-t~~em~~~l~~~~~ 105 (179)
T 3p45_A 46 IALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFND-L-KAEELLLKIHEVST 105 (179)
T ss_dssp EEEEEECCSCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEEEEES-C-CHHHHHHHHHHHHT
T ss_pred EEEEEeCcccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEeC-C-CHHHHHHHHHHHhh
Confidence 788888877753211111 1245688999999999988744 4 78899999988643
No 132
>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis, hydrolas hydrolase inhibitor complex; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A 1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A*
Probab=20.19 E-value=3e+02 Score=27.26 Aligned_cols=55 Identities=16% Similarity=0.263 Sum_probs=39.5
Q ss_pred EEEEEECCCCcccccccc-----cChhcHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHHh
Q 006816 167 LTLIYDDNHNTIDGPTSL-----VLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAAN 223 (630)
Q Consensus 167 li~i~~~N~~~i~~~~~~-----~~~~~~~~~~~a~G~~~~~v~dG~~d~~~l~~al~~a~~ 223 (630)
+.+|++|..|.-...... .....+.+.|+.+|+++....| - +..++.+++++..+
T Consensus 71 ~aLIInN~~f~~~~~L~~R~G~~~Da~~L~~~f~~LGF~V~~~~d-l-t~~em~~~l~~~~~ 130 (305)
T 1f1j_A 71 KCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYND-C-SCAKMQDLLKKASE 130 (305)
T ss_dssp EEEEEECCCCCTTTTCCCCTTHHHHHHHHHHHHHHHTEEEEEEES-C-CHHHHHHHHHHHHH
T ss_pred EEEEEechhcCCCccCccCCCcHHHHHHHHHHHHHCCCEEEEecC-c-CHHHHHHHHHHHHH
Confidence 788888888864322111 1235688899999999988745 4 78899999988754
Done!