RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 006816
(630 letters)
>gnl|CDD|215424 PLN02790, PLN02790, transketolase.
Length = 654
Score = 1085 bits (2808), Expect = 0.0
Identities = 381/655 (58%), Positives = 469/655 (71%), Gaps = 30/655 (4%)
Query: 1 MLIVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQY 60
L +DAV A +GHPG+ +G A +G+VLY MKYNP+N WFNRDRFVLSAGHGC+LQY
Sbjct: 3 FLAIDAVNKANSGHPGLPMGCAPMGHVLYDEVMKYNPKNPYWFNRDRFVLSAGHGCMLQY 62
Query: 61 VCLHLAGFQSVQLEDLKRLCKMGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEA 120
LHLAG+ SVQ+EDLK+ + GSRTPGHPEN T GIEVTTGPLGQG+ANAVGLALAE
Sbjct: 63 ALLHLAGYDSVQMEDLKQFRQWGSRTPGHPENFETPGIEVTTGPLGQGIANAVGLALAEK 122
Query: 121 HLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDG 180
HLAARFNKPD +VDH TYCI+ DGC MEGIS+EAA+LA HW L KL ++YDDNH +IDG
Sbjct: 123 HLAARFNKPDHKIVDHYTYCILGDGCQMEGISNEAASLAGHWGLGKLIVLYDDNHISIDG 182
Query: 181 PTSLVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRV------- 233
T + +ED+ R+++LGW+TI V+N + + + A+ A T KPT I+V
Sbjct: 183 DTEIAFTEDVDKRYEALGWHTIWVKNGNTDYDEIRAAIKEAKAVTDKPTLIKVTTTIGYG 242
Query: 234 --------------------KKMRERVNWVDRDQFHVIPMVYREMQIQTDHGERLEKEWC 273
R+ + W + FHV V T G LE EW
Sbjct: 243 SPNKANSYSVHGAALGEKEVDATRKNLGW-PYEPFHVPEDVKSHWSKHTKEGAALEAEWN 301
Query: 274 SKVYNYRSKYPHEGAELDLLLNGGLLPGWENALPKWSTSDPLDATRGYSEKCLNQLAKVL 333
+K Y+ KYP E AEL L++G L GWE ALP ++ DP DATR S+KCLN LAKVL
Sbjct: 302 AKFAEYKKKYPEEAAELKSLISGELPSGWEKALPTFTPEDPADATRNLSQKCLNALAKVL 361
Query: 334 PGLIGGSADLASSNKAYLLGYHDFSQPDSPWGRNIRYGVREHAMAGISNGVALHGGGLIP 393
PGLIGGSADLASSN L + DF Q D+P RN+R+GVREH M I NG+ALH GLIP
Sbjct: 362 PGLIGGSADLASSNMTLLKDFGDF-QKDTPEERNVRFGVREHGMGAICNGIALHSSGLIP 420
Query: 394 FAATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAVPRLL 453
+ ATF +F+DYM+ ++RLSALS AGVIY++THDSIGLGEDGPTHQP+E LA LRA+P +L
Sbjct: 421 YCATFFVFTDYMRAAMRLSALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLASLRAMPNIL 480
Query: 454 AFRPADGNETAGSYRVAIANRDVPSVIALSRQKIAANLEGTSADEVERGGYIVSDNSSEN 513
RPADGNETAG+Y+VA+ NR P+V+ALSRQK+ NL GTS + VE+GGY++SDNSS N
Sbjct: 481 MLRPADGNETAGAYKVAVTNRKRPTVLALSRQKV-PNLPGTSIEGVEKGGYVISDNSSGN 539
Query: 514 KPEIILIGTGTELSLCEGTAKTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLPSRVVKR 573
KP++ILIGTG+EL + AK LR+EG++VRVVS+VCW LF+ Q EYKE VLPS V R
Sbjct: 540 KPDLILIGTGSELEIAAKAAKELRKEGKKVRVVSMVCWELFEEQSDEYKESVLPSSVTAR 599
Query: 574 VSVEAGSSVGWREYVGVEGKVIGVEEFGASGAYLDTFKKYGFTIDNVTKVARSLL 628
VSVEAGS+ GW +YVG +GKVIGV+ FGAS +K++GFT++NV A+SLL
Sbjct: 600 VSVEAGSTFGWEKYVGSKGKVIGVDRFGASAPAGILYKEFGFTVENVVAAAKSLL 654
>gnl|CDD|223100 COG0021, TktA, Transketolase [Carbohydrate transport and
metabolism].
Length = 663
Score = 861 bits (2226), Expect = 0.0
Identities = 321/655 (49%), Positives = 423/655 (64%), Gaps = 34/655 (5%)
Query: 2 LIVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQYV 61
L +DAVQ A +GHPG +G A++ YVL+ +K+NP N KW NRDRFVLSAGHG +L Y
Sbjct: 16 LSMDAVQKANSGHPGAPMGAADIAYVLWTRFLKHNPDNPKWINRDRFVLSAGHGSMLLYS 75
Query: 62 CLHLAGFQSVQLEDLKRLCKMGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEAH 121
LHL G+ + LEDLK ++GS+TPGHPE T G+E TTGPLGQG+ANAVG+ALAE H
Sbjct: 76 LLHLTGYD-LSLEDLKNFRQLGSKTPGHPEYGHTPGVEATTGPLGQGLANAVGMALAEKH 134
Query: 122 LAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGP 181
LAA FN+P +VDH TY ++ DGC MEG+SHEAA+LA H KL KL ++YD N +IDG
Sbjct: 135 LAALFNRPGFDIVDHYTYVLVGDGCLMEGVSHEAASLAGHLKLGKLIVLYDSNDISIDGD 194
Query: 182 TSLVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVK------- 234
TSL +ED++ RF++ GWN I V + HD L + +A+ A T KPT I VK
Sbjct: 195 TSLSFTEDVAKRFEAYGWNVIRVIDGHD-LEAIDKAIEEAKASTDKPTLIIVKTIIGKGS 253
Query: 235 --------------------KMRERVNWVDRDQFHVIPMVYREMQIQTDHGERLEKEWCS 274
++ + W + + F V VY + + G + E W
Sbjct: 254 PNKEGTHKVHGAPLGEEEVAAAKKALGW-EPEPFEVPEEVYAAFRAVEERGAKAEAAWNE 312
Query: 275 KVYNYRSKYPHEGAELDLLLNGGLLPGWENALPKWSTSDPLDATRGYSEKCLNQLAKVLP 334
Y+ KYP AE + LNG L W LPK+ + ATR S K LN LAK LP
Sbjct: 313 LFAAYKKKYPELAAEFERRLNGELPANWAAFLPKFEANGKSIATRKASGKALNALAKKLP 372
Query: 335 GLIGGSADLASSNKAYLLGYHDFSQPDSPWGRNIRYGVREHAMAGISNGVALHGGGLIPF 394
LIGGSADLA SN + G DFS P++ GR I +GVRE AMA I NG+ALHGG IP+
Sbjct: 373 ELIGGSADLAPSNLTKISGSGDFS-PENYAGRYIHFGVREFAMAAIMNGIALHGG-FIPY 430
Query: 395 AATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAVPRLLA 454
TFL+FSDY + ++RL+AL VIY+ THDSIG+GEDGPTHQPVEQLA LRA+P L
Sbjct: 431 GGTFLVFSDYARPAVRLAALMGLPVIYVFTHDSIGVGEDGPTHQPVEQLASLRAIPNLSV 490
Query: 455 FRPADGNETAGSYRVAIANRDVPSVIALSRQKIAANLEGTSADEVERGGYIVSDNSSENK 514
RPAD NETA +++ A+ +D P+ + L+RQ + LE T + V +G Y++ D+ E+
Sbjct: 491 IRPADANETAAAWKYALERKDGPTALILTRQNL-PVLERTDLEGVAKGAYVLKDSGGED- 548
Query: 515 PEIILIGTGTELSLCEGTAKTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLPSRVVKRV 574
P++ILI TG+E+ L AK L EG +VRVVS+ + LF++Q EY+E VLP V RV
Sbjct: 549 PDVILIATGSEVELAVEAAKELEAEGIKVRVVSMPSFELFEKQDEEYRESVLPGAVTARV 608
Query: 575 SVEAGSSVGWREYVGVEGKVIGVEEFGASGAYLDTFKKYGFTIDNVTKVARSLLS 629
++EAGS++GW +YVG++G VIG++ FGAS + FK++GFT++NV A+SLL+
Sbjct: 609 AIEAGSALGWYKYVGLDGAVIGMDSFGASAPGDELFKEFGFTVENVVAKAKSLLN 663
>gnl|CDD|232887 TIGR00232, tktlase_bact, transketolase, bacterial and yeast. This
model is designed to capture orthologs of bacterial
transketolases. The group includes two from the yeast
Saccharomyces cerevisiae but excludes dihydroxyactetone
synthases (formaldehyde transketolases) from various
yeasts and the even more distant mammalian
transketolases. Among the family of thiamine
diphosphate-dependent enzymes that includes
transketolases, dihydroxyacetone synthases, pyruvate
dehydrogenase E1-beta subunits, and
deoxyxylulose-5-phosphate synthases, mammalian and
bacterial transketolases seem not to be orthologous
[Energy metabolism, Pentose phosphate pathway].
Length = 653
Score = 736 bits (1901), Expect = 0.0
Identities = 299/655 (45%), Positives = 404/655 (61%), Gaps = 39/655 (5%)
Query: 2 LIVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQYV 61
L VDA+Q AK+GHPG LG A + VL+ +K+NP N KW NRDRFVLS GHG +L Y
Sbjct: 10 LAVDAIQKAKSGHPGAPLGAAPIAEVLWTKFLKFNPTNPKWINRDRFVLSNGHGSMLLYS 69
Query: 62 CLHLAGFQSVQLEDLKRLCKMGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEAH 121
LHL G+ +EDLK+ ++ S+TPGHPE T G+E TTGPLGQG+ANAVG+A+A+
Sbjct: 70 LLHLTGYDL-SIEDLKQFRQLHSKTPGHPEFGHTAGVEATTGPLGQGIANAVGMAIAQKT 128
Query: 122 LAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGP 181
LAA FNKP +VDH TY + DGC EGIS+E A+LA H KL KL ++YD N +IDG
Sbjct: 129 LAATFNKPGFEIVDHYTYVFVGDGCLQEGISYEVASLAGHLKLGKLIVLYDSNRISIDGA 188
Query: 182 TSLVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRV-------- 233
+ED++ RF++ GW + VE+ HD L++ A+ A KPT I V
Sbjct: 189 VDGSFTEDVAKRFEAYGWEVLEVEDGHD-LAAIDAAIEEAKASKDKPTLIEVTTTIGFGS 247
Query: 234 -------------------KKMRERVNWVDRDQFHVIPMVYREMQIQT-DHGERLEKEWC 273
K ++ + W + + F V VY Q + G + E+EW
Sbjct: 248 PNKAGTHGVHGAPLGDEDVKLTKKNLGW-NYNPFEVPQEVYDHFQKTVKERGAKAEQEWN 306
Query: 274 SKVYNYRSKYPHEGAELDLLLNGGLLPGWENALPKWSTSDPLDATRGYSEKCLNQLAKVL 333
Y+ KYP AE L+G L W+ LP++ ATR YS+ LN +A VL
Sbjct: 307 ELFAAYKKKYPELAAEFTRRLSGELPADWDKKLPEFKAKLQALATRKYSQNVLNAIANVL 366
Query: 334 PGLIGGSADLASSNKAYLLGYHDFSQPDSPWGRNIRYGVREHAMAGISNGVALHGGGLIP 393
P L+GGSADLA SN G D ++P G I YGVRE AM I NG+ALHGG P
Sbjct: 367 PELLGGSADLAPSNLTKWKGSGDL--HENPLGNYIHYGVREFAMGAIMNGIALHGG-FKP 423
Query: 394 FAATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAVPRLL 453
+ TFL+F DY + +IRL+AL VIY+ THDSIG+GEDGPTHQP+EQLA LRA+P L
Sbjct: 424 YGGTFLMFVDYARPAIRLAALMKLPVIYVYTHDSIGVGEDGPTHQPIEQLASLRAIPNLS 483
Query: 454 AFRPADGNETAGSYRVAIANRDVPSVIALSRQKIAANLEGTSADEVERGGYIVSDNSSEN 513
+RP DGNETA +++ A+ ++D P+ + LSRQ + LE +S ++V +GGY++ D S+
Sbjct: 484 VWRPCDGNETAAAWKYALESQDGPTALILSRQNL-PQLEESSLEKVLKGGYVLKD--SKG 540
Query: 514 KPEIILIGTGTELSLCEGTAKTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLPSRVVKR 573
P+IILI TG+E+SL AK L E +VRVVS+ + LFD+Q EY+E VLP+ V R
Sbjct: 541 -PDIILIATGSEVSLAVEAAKKLAAENIKVRVVSMPSFDLFDKQDEEYRESVLPAN-VTR 598
Query: 574 VSVEAGSSVGWREYVGVEGKVIGVEEFGASGAYLDTFKKYGFTIDNVTKVARSLL 628
++VEAG++ W +Y G+ G ++G++ FG S F+++GFT++NV A+ LL
Sbjct: 599 LAVEAGAADEWYKYAGLVGAILGMDSFGESAPGDKLFEEFGFTVENVVAKAKKLL 653
>gnl|CDD|173383 PTZ00089, PTZ00089, transketolase; Provisional.
Length = 661
Score = 724 bits (1870), Expect = 0.0
Identities = 303/654 (46%), Positives = 398/654 (60%), Gaps = 36/654 (5%)
Query: 1 MLIVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQY 60
L D VQ A +GHPG +GMA + ++L+ MKYNP++ +W NRDRFVLS GH L Y
Sbjct: 15 CLSADLVQKANSGHPGAPMGMAPIAHILWSEVMKYNPKDPRWINRDRFVLSNGHASALLY 74
Query: 61 VCLHLAGFQSVQLEDLKRLCKMGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEA 120
LHL G + +EDLK ++GSRTPGHPE +T G+EVTTGPLGQG+ANAVGLA+AE
Sbjct: 75 SMLHLTG-YDLSMEDLKNFRQLGSRTPGHPERHITPGVEVTTGPLGQGIANAVGLAIAEK 133
Query: 121 HLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDG 180
HLAA+FN+P + D+ Y I DGC EG+S EA +LA H L KL ++YDDN TIDG
Sbjct: 134 HLAAKFNRPGHPIFDNYVYVICGDGCLQEGVSQEALSLAGHLGLEKLIVLYDDNKITIDG 193
Query: 181 PTSLVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVK------ 234
T L +ED+ ++++ GW+ I V+N + + ++A+ A KP I VK
Sbjct: 194 NTDLSFTEDVEKKYEAYGWHVIEVDNGNTDFDGLRKAIEEAKKSKGKPKLIIVKTTIGYG 253
Query: 235 --------------------KMRERVNWVDRDQFHVIPMVYREMQIQTDHGERLEKEWCS 274
+++E +FHV V + + + + + W
Sbjct: 254 SSKAGTEKVHGAPLGDEDIAQVKELFGLDPEKKFHVSEEVRQFFEQHVEKKKENYEAWKK 313
Query: 275 KVYNYRSKYPHEGAELDLLLNGGLLPGWENALPKWSTSDPLDATRGYSEKCLNQLAKVLP 334
+ Y + +P E ++ G L PGWE LPK++T+D ATR SE LN L ++LP
Sbjct: 314 RFAKYTAAFPKEAQAIERRFKGELPPGWEKKLPKYTTNDKAIATRKASENVLNPLFQILP 373
Query: 335 GLIGGSADLASSNKAYLLGYHDFSQPDSPWGRNIRYGVREHAMAGISNGVALHGGGLIPF 394
LIGGSADL SN +DF SP GR IR+GVREHAM I NG+A HGG IPF
Sbjct: 374 ELIGGSADLTPSNLTRPKEANDF-TKASPEGRYIRFGVREHAMCAIMNGIAAHGG-FIPF 431
Query: 395 AATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAVPRLLA 454
ATFL F Y ++RL+ALSH VIY+ THDSIGLGEDGPTHQPVE LA LRA P LL
Sbjct: 432 GATFLNFYGYALGAVRLAALSHHPVIYVATHDSIGLGEDGPTHQPVETLALLRATPNLLV 491
Query: 455 FRPADGNETAGSYRVAIANRDVPSVIALSRQKIAANLEGTSADEVERGGYIVSDNSSENK 514
RPADG ET+G+Y +A+AN P+++ LSRQ L G+S + V +G YIV D N
Sbjct: 492 IRPADGTETSGAYALALANAKTPTILCLSRQNT-PPLPGSSIEGVLKGAYIVVD--FTNS 548
Query: 515 PEIILIGTGTELSLCEGTAKTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLPSRVVKRV 574
P++IL+ +G+E+SLC AK L +E VRVVS+ CW LFD+Q EY++ VLPS V +
Sbjct: 549 PQLILVASGSEVSLCVEAAKALSKE-LNVRVVSMPCWELFDQQSEEYQQSVLPSGGVPVL 607
Query: 575 SVEAGSSVGWREYVGVEGKVIGVEEFGASGAYLDTFKKYGFTIDNVTKVARSLL 628
SVEA S GW +Y V +G+ FGAS +K +GFT++NV + AR+L
Sbjct: 608 SVEAYVSFGWEKYSHVH---VGISGFGASAPANALYKHFGFTVENVVEKARALA 658
>gnl|CDD|183723 PRK12753, PRK12753, transketolase; Reviewed.
Length = 663
Score = 622 bits (1606), Expect = 0.0
Identities = 279/661 (42%), Positives = 378/661 (57%), Gaps = 43/661 (6%)
Query: 1 MLIVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQY 60
L +DAVQ A +GHPG +GMA++ VL+R +K+NP N W++RDRF+LS GH +L Y
Sbjct: 13 ALSMDAVQKANSGHPGAPMGMADIAEVLWRDFLKHNPTNPTWYDRDRFILSNGHASMLLY 72
Query: 61 VCLHLAGFQSVQLEDLKRLCKMGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEA 120
LHL G+ + +E+LK ++ S+TPGHPE T G+E TTGPLGQG+ANAVGLA+AE
Sbjct: 73 SLLHLTGYD-LPIEELKNFRQLHSKTPGHPEIGYTPGVETTTGPLGQGLANAVGLAIAER 131
Query: 121 HLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDG 180
LAA+FN+P +VDH TY M DGC MEGISHE +LA L KL YD N +IDG
Sbjct: 132 TLAAQFNRPGHEIVDHYTYVFMGDGCLMEGISHEVCSLAGTLGLGKLIGFYDHNGISIDG 191
Query: 181 PTSLVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFI--------- 231
T ++D + RF++ W+ I + HD + KEA++ A + KP+ I
Sbjct: 192 ETEGWFTDDTAKRFEAYHWHVIHEIDGHDP-QAIKEAILEAQSVKDKPSLIICRTIIGFG 250
Query: 232 ------------------RVKKMRERVNWVDRDQFHVIPMVYREMQIQTDHGERLEKEWC 273
V R+++ W F + +Y + GE+ E+ W
Sbjct: 251 SPNKAGKEESHGAPLGEEEVALTRQKLGW-HHPPFEIPKEIYAAWD-AREKGEKAEQAWN 308
Query: 274 SKVYNYRSKYPHEGAELDLLLNGGLLPGWE---NALPKWSTSDPLD-ATRGYSEKCLNQL 329
K Y+ YP AE ++GGL WE ++P ATR S+ L
Sbjct: 309 EKFAAYKKAYPELAAEFTRRMSGGLPKDWEKKTQKYINELQANPAKIATRKASQNTLEAY 368
Query: 330 AKVLPGLIGGSADLASSNKAYLLGYHDFSQPDSPWGRNIRYGVREHAMAGISNGVALHGG 389
+LP L+GGSADLA SN G + P G I YGVRE M I+NG+A HGG
Sbjct: 369 GPLLPELLGGSADLAPSNLTIWSGSKSLKE--DPAGNYIHYGVREFGMTAIANGIAHHGG 426
Query: 390 GLIPFAATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAV 449
+P+ ATFL+F +Y +N+ R++AL A I + THDSIGLGEDGPTHQPVEQLA LR
Sbjct: 427 -FVPYTATFLMFVEYARNAARMAALMKARQIMVYTHDSIGLGEDGPTHQPVEQLASLRLT 485
Query: 450 PRLLAFRPADGNETAGSYRVAIANRDVPSVIALSRQKIAANLEGTSA--DEVERGGYIVS 507
P +RP D E A ++++AI + P+ + LSRQ +A E T + RGGYI+
Sbjct: 486 PNFSTWRPCDQVEAAVAWKLAIERHNGPTALILSRQNLA-QQERTPEQVKNIARGGYILK 544
Query: 508 DNSSENKPEIILIGTGTELSLCEGTAKTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLP 567
D S KP++ILI TG+E+ + A+ L EGR VRVVS+ +FD Q Y+E VLP
Sbjct: 545 D--SGGKPDLILIATGSEVEITLQAAEKLTAEGRNVRVVSMPSTDIFDAQDEAYRESVLP 602
Query: 568 SRVVKRVSVEAGSSVGWREYVGVEGKVIGVEEFGASGAYLDTFKKYGFTIDNVTKVARSL 627
S V RV+VEAG + W +YVG++G +IG+ FG S F +GFT++N+ A+ L
Sbjct: 603 SNVTARVAVEAGIADYWYKYVGLKGAIIGMTGFGESAPADKLFPFFGFTVENIVAKAKKL 662
Query: 628 L 628
L
Sbjct: 663 L 663
>gnl|CDD|183724 PRK12754, PRK12754, transketolase; Reviewed.
Length = 663
Score = 511 bits (1317), Expect = e-174
Identities = 265/661 (40%), Positives = 382/661 (57%), Gaps = 45/661 (6%)
Query: 2 LIVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQYV 61
L +DAVQ AK+GHPG +GMA++ VL+R + +NP+N W +RDRFVLS GHG +L Y
Sbjct: 14 LSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLNHNPQNPSWADRDRFVLSNGHGSMLIYS 73
Query: 62 CLHLAGFQSVQLEDLKRLCKMGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEAH 121
LHL G+ + +E+LK ++ S+TPGHPE T G+E TTGPLGQG+ANAVG+A+AE
Sbjct: 74 LLHLTGY-DLPMEELKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEKT 132
Query: 122 LAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGP 181
LAA+FN+P +VDH TY M DGC MEGISHE +LA KL KL YDDN +IDG
Sbjct: 133 LAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGISIDGH 192
Query: 182 TSLVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKM----- 236
++D + RF++ GW+ I + HD S K A+ A T KP+ + K +
Sbjct: 193 VEGWFTDDTAMRFEAYGWHVIRGIDGHDA-DSIKRAVEEARAVTDKPSLLMCKTIIGFGS 251
Query: 237 ----------------------RERVNWVDRDQFHVIPMVYREMQIQTDHGERLEKEWCS 274
RE++ W F + +Y + + + G+ E W
Sbjct: 252 PNKAGTHDSHGAPLGDAEIALTREQLGW-KYAPFEIPSEIYAQWDAK-EAGQAKESAWNE 309
Query: 275 KVYNYRSKYPHEGAELDLLLNGGLLPGWENALPKWST---SDPLD-ATRGYSEKCLNQLA 330
K Y YP E AE + G + ++ ++ ++P A+R S+ +
Sbjct: 310 KFAAYAKAYPQEAAEFTRRMKGEMPADFDAKAKEFIAKLQANPAKIASRKASQNAIEAFG 369
Query: 331 KVLPGLIGGSADLASSNKAYLLGYHDFSQPDSPWGRNIRYGVREHAMAGISNGVALHGGG 390
+LP +GGSADLA SN G ++ + G I YGVRE M I+NG+ALHGG
Sbjct: 370 PLLPEFLGGSADLAPSNLTLWSGSKAINEDAA--GNYIHYGVREFGMTAIANGIALHGG- 426
Query: 391 LIPFAATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAVP 450
+P+ +TFL+F +Y +N++R++AL + + THDSIGLGEDGPTHQPVEQ+A LR P
Sbjct: 427 FLPYTSTFLMFVEYARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTP 486
Query: 451 RLLAFRPADGNETAGSYRVAIANRDVPSVIALSRQKIAANLEGTSADE---VERGGYIVS 507
+ +RP D E+A +++ + +D P+ + LSRQ +A + + ++ + RGGY++
Sbjct: 487 NMSTWRPCDQVESAVAWKYGVERQDGPTALILSRQNLAQ--QERTEEQLANIARGGYVLK 544
Query: 508 DNSSENKPEIILIGTGTELSLCEGTAKTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLP 567
D +PE+I I TG+E+ L + L EG + RVVS+ FD+Q A Y+E VLP
Sbjct: 545 D--CAGQPELIFIATGSEVELAVAAYEKLTAEGVKARVVSMPSTDAFDKQDAAYRESVLP 602
Query: 568 SRVVKRVSVEAGSSVGWREYVGVEGKVIGVEEFGASGAYLDTFKKYGFTIDNVTKVARSL 627
V RV+VEAG + W +YVG+ G ++G+ FG S F+++GFT+DNV A++L
Sbjct: 603 KAVSARVAVEAGIADYWYKYVGLNGAIVGMTTFGESAPAELLFEEFGFTVDNVVAKAKAL 662
Query: 628 L 628
L
Sbjct: 663 L 663
>gnl|CDD|235639 PRK05899, PRK05899, transketolase; Reviewed.
Length = 586
Score = 434 bits (1118), Expect = e-145
Identities = 168/311 (54%), Positives = 215/311 (69%), Gaps = 9/311 (2%)
Query: 319 RGYSEKCLNQLAKVLPGLIGGSADLASSNKAYLLGYHDFSQPDSPWGRNIRYGVREHAMA 378
R S K LN LAK LP L+GGSADLA SN + G DF P+ GR I YGVRE AMA
Sbjct: 284 RKASGKALNALAKALPELVGGSADLAGSNNTKIKGSKDF-APEDYSGRYIHYGVREFAMA 342
Query: 379 GISNGVALHGGGLIPFAATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQ 438
I+NG+ALHGG IPF TFL+FSDY +N+IRL+AL VIY+ THDSIG+GEDGPTHQ
Sbjct: 343 AIANGLALHGG-FIPFGGTFLVFSDYARNAIRLAALMKLPVIYVFTHDSIGVGEDGPTHQ 401
Query: 439 PVEQLAGLRAVPRLLAFRPADGNETAGSYRVAIANRDVPSVIALSRQKIAANLEGTSADE 498
PVEQLA LRA+P L RPAD NETA +++ A+ +D PS + L+RQ + LE T+ +E
Sbjct: 402 PVEQLASLRAIPNLTVIRPADANETAAAWKYALERKDGPSALVLTRQNL-PVLERTAQEE 460
Query: 499 -VERGGYIVSDNSSENKPEIILIGTGTELSLCEGTAKTLRQEGRRVRVVSLVCWRLFDRQ 557
V +GGY++ D P++ILI TG+E+ L A L EG +VRVVS+ LFD Q
Sbjct: 461 GVAKGGYVLRD-----DPDVILIATGSEVHLALEAADELEAEGIKVRVVSMPSTELFDEQ 515
Query: 558 PAEYKEKVLPSRVVKRVSVEAGSSVGWREYVGVEGKVIGVEEFGASGAYLDTFKKYGFTI 617
A YKE VLP+ V RV+VEAG + GW +YVG++GKV+G++ FGAS + FK++GFT+
Sbjct: 516 DAAYKESVLPAAVTARVAVEAGVADGWYKYVGLDGKVLGIDTFGASAPADELFKEFGFTV 575
Query: 618 DNVTKVARSLL 628
+N+ A+ LL
Sbjct: 576 ENIVAAAKELL 586
Score = 366 bits (942), Expect = e-119
Identities = 125/234 (53%), Positives = 164/234 (70%), Gaps = 4/234 (1%)
Query: 1 MLIVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQY 60
+L +DAVQ A +GHPGM +G A++ YVL+ ++++P+N KW NRDRFVLSAGHG +L Y
Sbjct: 17 VLSIDAVQKANSGHPGMPMGAADIAYVLWTRFLRHDPKNPKWPNRDRFVLSAGHGSMLLY 76
Query: 61 VCLHLAGFQSVQLEDLKRLCKMGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEA 120
LHLAG+ + ++DLK ++GS+TPGHPE T G+E TTGPLGQG+ANAVG+ALAE
Sbjct: 77 SLLHLAGYD-LSIDDLKNFRQLGSKTPGHPEYGHTPGVETTTGPLGQGLANAVGMALAEK 135
Query: 121 HLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDG 180
+LAA FN+P +VDH TY + DG MEGISHEA +LA H KL L +IYDDN +IDG
Sbjct: 136 YLAALFNRPGLDIVDHYTYVLCGDGDLMEGISHEACSLAGHLKLGNLIVIYDDNRISIDG 195
Query: 181 PTSLVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVK 234
PT +ED+ RF++ GW+ I V+ HD + + A+ A T KPT I K
Sbjct: 196 PTEGWFTEDVKKRFEAYGWHVIEVDG-HD-VEAIDAAIEEAKAST-KPTLIIAK 246
>gnl|CDD|144157 pfam00456, Transketolase_N, Transketolase, thiamine diphosphate
binding domain. This family includes transketolase
enzymes EC:2.2.1.1. and also partially matches to
2-oxoisovalerate dehydrogenase beta subunit EC:1.2.4.4.
Both these enzymes utilise thiamine pyrophosphate as a
cofactor, suggesting there may be common aspects in
their mechanism of catalysis.
Length = 333
Score = 346 bits (889), Expect = e-115
Identities = 139/324 (42%), Positives = 189/324 (58%), Gaps = 30/324 (9%)
Query: 2 LIVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQYV 61
L +DAV+ A +GHPG +GMA + VL++ +++NP + KW NRDRFVLS GH +L Y
Sbjct: 12 LAMDAVEKAGSGHPGAPMGMAPIAEVLFKRTLRHNPNDPKWPNRDRFVLSNGHASMLLYS 71
Query: 62 CLHLAGFQSVQLEDLKRLCKMGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEAH 121
LHL G+ + +EDLK ++GS+TPGHPE T G+EVTTGPLGQG+ANAVG+A+AEA+
Sbjct: 72 LLHLTGY-DLSMEDLKSFRQLGSKTPGHPEFGHTAGVEVTTGPLGQGIANAVGMAIAEAN 130
Query: 122 LAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGP 181
LAA +N+P +VDH TY + DGC MEG+S EA++LA H KL L YDDN +IDG
Sbjct: 131 LAATYNRPGFDIVDHYTYVFLGDGCLMEGVSSEASSLAGHLKLGNLIAFYDDNRISIDGE 190
Query: 182 TSLVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIR--------- 232
T + +ED + RF++ GW+ I VE+ HD + + A+ A E KPT I
Sbjct: 191 TEISFTEDTAKRFEAYGWHVIEVEDGHD-VEAIAAAIEEAKAEKDKPTLIICRTVIGYGS 249
Query: 233 ------------------VKKMRERVNWVDRDQFHVIPMVYREMQIQTDHGERLEKEWCS 274
V ++E++ W D F + VY + + G + E EW
Sbjct: 250 PNKQGTHDVHGAPLGADEVAALKEKLGW-DYKPFEIPQEVYDAWKEKVAEGAKAEAEWNE 308
Query: 275 KVYNYRSKYPHEGAELDLLLNGGL 298
Y+ YP E AE LNG L
Sbjct: 309 LFAAYKKAYPEEAAEFVRRLNGEL 332
>gnl|CDD|238970 cd02012, TPP_TK, Thiamine pyrophosphate (TPP) family, Transketolase
(TK) subfamily, TPP-binding module; TK catalyzes the
transfer of a two-carbon unit from ketose phosphates to
aldose phosphates. In heterotrophic organisms, TK
provides a link between glycolysis and the pentose
phosphate pathway and provides precursors for
nucleotide, aromatic amino acid and vitamin
biosynthesis. In addition, the enzyme plays a central
role in the Calvin cycle in plants. Typically, TKs are
homodimers. They require TPP and divalent cations, such
as magnesium ions, for activity.
Length = 255
Score = 322 bits (827), Expect = e-106
Identities = 107/234 (45%), Positives = 137/234 (58%), Gaps = 15/234 (6%)
Query: 2 LIVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQYV 61
L +D VQ A +GHPG +L A++ VLY +KY+P + KW NRDRFVLS GH Y
Sbjct: 6 LSIDMVQKAGSGHPGGSLSAADILAVLYFKVLKYDPADPKWPNRDRFVLSKGHASPALYA 65
Query: 62 CLHLAGFQSVQLEDLKRLCKMGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEAH 121
L LAG+ EDLK ++GSR PGHPE +T G+EVTTG LGQG++ AVG+ALAE
Sbjct: 66 VLALAGYLPE--EDLKTFRQLGSRLPGHPEYGLTPGVEVTTGSLGQGLSVAVGMALAEKL 123
Query: 122 LAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGP 181
L D+R Y ++ DG EG EAA+ A H+KL+ L I D N IDGP
Sbjct: 124 L----------GFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLIAIVDSNRIQIDGP 173
Query: 182 TSLVLS-EDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVK 234
T +L ED++ +F++ GWN I V+ HD + AL A KPT I K
Sbjct: 174 TDDILFTEDLAKKFEAFGWNVIEVDG-HD-VEEILAALEEAKKSKGKPTLIIAK 225
>gnl|CDD|132916 cd07033, TPP_PYR_DXS_TK_like, Pyrimidine (PYR) binding domain of
1-deoxy-D-xylulose-5-phosphate synthase (DXS),
transketolase (TK), and related proteins. Thiamine
pyrophosphate (TPP) family, pyrimidine (PYR) binding
domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS),
transketolase (TK), and the beta subunits of the E1
component of the human pyruvate dehydrogenase complex
(E1- PDHc), subfamily. The PYR domain is found in many
key metabolic enzymes which use TPP (also known as
thiamine diphosphate) as a cofactor. TPP binds in the
cleft formed by a PYR domain and a PP domain. The PYR
domain, binds the aminopyrimidine ring of TPP, the PP
domain binds the diphosphate residue. A polar
interaction between the conserved glutamate of the PYR
domain and the N1' of the TPP aminopyrimidine ring is
shared by most TPP-dependent enzymes, and participates
in the activation of TPP. The PYR and PP domains have a
common fold, but do not share strong sequence
conservation. The PP domain is not included in this
sub-family. Like many TPP-dependent enzymes DXS and TK
are homodimers having a PYR and a PP domain on the same
subunit. TK has two active sites per dimer which lie
between PYR and PP domains of different subunits. For
DXS each active site is located at the interface of a
PYR and a PP domain from the same subunit. E1-PDHc is an
alpha2beta2 dimer-of-heterodimers having two active
sites but having the PYR and PP domains arranged on
separate subunits, the PYR domains on the beta subunits,
the PP domains on the alpha subunits. DXS is a
regulatory enzyme of the mevalonate-independent pathway
involved in terpenoid biosynthesis, it catalyzes a
transketolase-type condensation of pyruvate with
D-glyceraldehyde-3-phosphate to form
1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide.
TK catalyzes the transfer of a two-carbon unit from
ketose phosphates to aldose phosphates. In heterotrophic
organisms, TK provides a link between glycolysis and the
pentose phosphate pathway and provides precursors for
nucleotide, aromatic amino acid and vitamin
biosynthesis. TK also plays a central role in the Calvin
cycle in plants. PDHc catalyzes the irreversible
oxidative decarboxylation of pyruvate to produce
acetyl-CoA in the bridging step between glycolysis and
the citric acid cycle. This subfamily includes the beta
subunits of the E1 component of the acetoin
dehydrogenase complex (ADC) and the branched chain
alpha-keto acid dehydrogenase/2-oxoisovalerate
dehydrogenase complex (BCADC). ADC participates in the
breakdown of acetoin. BCADC catalyzes the oxidative
decarboxylation of 4-methyl-2-oxopentanoate,
3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate
during the breakdown of branched chain amino acids.
Length = 156
Score = 191 bits (487), Expect = 9e-58
Identities = 64/164 (39%), Positives = 83/164 (50%), Gaps = 11/164 (6%)
Query: 322 SEKCLNQLAKVLPGLIGGSADLASSNKAYLLGYHDFSQPDSPWGRNIRYGVREHAMAGIS 381
+ L +LAK P ++ SADL S F R I G+ E M GI+
Sbjct: 3 FGEALLELAKKDPRIVALSADLGGSTGLDKFA-KKFP------DRFIDVGIAEQNMVGIA 55
Query: 382 NGVALHGGGLIPFAATFLIFSDYMKNSIR-LSALSHAGVIYILTHDSIGLGEDGPTHQPV 440
G+ALHG L PF +TF F + IR AL + V ++ TH I +GEDGPTHQ +
Sbjct: 56 AGLALHG--LKPFVSTFSFFLQRAYDQIRHDVALQNLPVKFVGTHAGISVGEDGPTHQGI 113
Query: 441 EQLAGLRAVPRLLAFRPADGNETAGSYRVAIANRDVPSVIALSR 484
E +A LRA+P + RPAD NETA + A+ P I L R
Sbjct: 114 EDIALLRAIPNMTVLRPADANETAAALEAALEYDG-PVYIRLPR 156
>gnl|CDD|226468 COG3959, COG3959, Transketolase, N-terminal subunit [Carbohydrate
transport and metabolism].
Length = 243
Score = 194 bits (494), Expect = 1e-57
Identities = 88/230 (38%), Positives = 123/230 (53%), Gaps = 15/230 (6%)
Query: 3 IVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQYVC 62
IV + NA +GH G +L + E+ VLY M +P + KW RDRF+LS GH Y
Sbjct: 21 IVRMLANAGSGHVGGSLSVVEILAVLYFKIMNIDPDDPKWPGRDRFILSKGHAAPALYAT 80
Query: 63 LHLAGFQSVQLEDLKRLCKMGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEAHL 122
L G+ E+L+ ++GSR PGHPE T G+EV+TG LGQG++ AVG+AL
Sbjct: 81 LAEKGYFPE--EELETFRRIGSRLPGHPERNKTPGVEVSTGSLGQGLSVAVGMALG---- 134
Query: 123 AARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGPT 182
A P +R Y I+ DG EG EAA AAH+KL+ L I D N +DG T
Sbjct: 135 AKLKGSP------YRVYVILGDGELDEGQVWEAAMTAAHYKLDNLIAIVDRNKLQLDGET 188
Query: 183 SLVLS-EDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFI 231
++ E ++ ++++ GW I V+ ++ EAL A +PT I
Sbjct: 189 EEIMPKEPLADKWEAFGWEVIEVDG--HDIEEIVEALEKAKGSKGRPTVI 236
>gnl|CDD|217226 pfam02779, Transket_pyr, Transketolase, pyrimidine binding domain.
This family includes transketolase enzymes, pyruvate
dehydrogenases, and branched chain alpha-keto acid
decarboxylases.
Length = 172
Score = 180 bits (459), Expect = 2e-53
Identities = 76/170 (44%), Positives = 96/170 (56%), Gaps = 7/170 (4%)
Query: 317 ATRGYSEKCLNQLAKVLPGLIGGSADLASSNKAYLLGYHDFSQPDSPWGRNIRYGVREHA 376
ATR S + L +LAK P ++GG AD+A G GR I G+ E A
Sbjct: 4 ATRKASGEALAELAKRDPRVVGGGADVAGGTFTVTKGLLHPQGD----GRVIDTGIAEQA 59
Query: 377 MAGISNGVALHGGGLIPFAATFLIFSDYMKNSIR-LSALSHAGVIYILTHDSIGLGEDGP 435
M GI+NG+ALHG L P ATF F++ ++IR +AL V +++T D IG+GEDGP
Sbjct: 60 MVGIANGMALHGL-LPPVEATFGDFANRADDAIRHYAALGKLPVPFVVTRDPIGVGEDGP 118
Query: 436 THQPVEQLAGLRAVPRLLAFRPADGNETAGSYRVAIANRDVPSVIALSRQ 485
THQ E LA LRA+P L RP+D ET G R AI D P V+ L RQ
Sbjct: 119 THQSQEDLAFLRAIPNLKVVRPSDAAETKGLLRAAIE-DDGPVVLRLPRQ 167
>gnl|CDD|214865 smart00861, Transket_pyr, Transketolase, pyrimidine binding domain.
Transketolase (TK) catalyzes the reversible transfer of
a two-carbon ketol unit from xylulose 5-phosphate to an
aldose receptor, such as ribose 5-phosphate, to form
sedoheptulose 7-phosphate and glyceraldehyde 3-
phosphate. This enzyme, together with transaldolase,
provides a link between the glycolytic and
pentose-phosphate pathways. TK requires thiamine
pyrophosphate as a cofactor. In most sources where TK
has been purified, it is a homodimer of approximately 70
Kd subunits. TK sequences from a variety of eukaryotic
and prokaryotic sources show that the enzyme has been
evolutionarily conserved. In the peroxisomes of
methylotrophic yeast Hansenula polymorpha, there is a
highly related enzyme, dihydroxy-acetone synthase (DHAS)
(also known as formaldehyde transketolase), which
exhibits a very unusual specificity by including
formaldehyde amongst its substrates.
Length = 136
Score = 129 bits (327), Expect = 2e-35
Identities = 51/120 (42%), Positives = 62/120 (51%), Gaps = 5/120 (4%)
Query: 368 IRYGVREHAMAGISNGVALHGGGLIPFAATFLIFSDYMKNSIRLSALSHAGVIYILTHDS 427
I G+ E AM G + G+ALHG L P F F D K+ IR + S V + HD
Sbjct: 18 IDTGIAEQAMVGFAAGLALHG--LRPVVEIFFTFFDRAKDQIRSAGASGN-VPVVFRHDG 74
Query: 428 -IGLGEDGPTHQPVEQLAGLRAVPRLLAFRPADGNETAGSYRVAIANRDVPSVIALSRQK 486
G+GEDGPTH +E A LRA+P L P+D E G R AI D P VI L R+
Sbjct: 75 GGGVGEDGPTHHSIEDEALLRAIPGLKVVAPSDPAEAKGLLRAAI-RDDGPVVIRLERKS 133
>gnl|CDD|226467 COG3958, COG3958, Transketolase, C-terminal subunit [Carbohydrate
transport and metabolism].
Length = 312
Score = 100 bits (251), Expect = 3e-23
Identities = 87/324 (26%), Positives = 144/324 (44%), Gaps = 49/324 (15%)
Query: 326 LNQLAKVLPGLIGGSADLASSNKAYLLGYHDFSQ--PDSPWGRNIRYGVREHAMAGISNG 383
L +L + ++ ADL+SS K F++ PD R G+ E M G + G
Sbjct: 17 LAELGRKNSDIVVLDADLSSSTKT-----GYFAKEFPD----RFFNVGIAEQDMVGTAAG 67
Query: 384 VALHGGGLIPFAATFLIFS-----DYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQ 438
+AL G PF +TF F + ++NSI A ++ V + TH + GEDG +HQ
Sbjct: 68 LAL--AGKKPFVSTFAAFLSRRAWEQIRNSI---AYNNLNVKIVATHAGVTYGEDGSSHQ 122
Query: 439 PVEQLAGLRAVPRLLAFRPADGNETAGSYRVAIANRDVPSVIALSRQKIAANLEGTSADE 498
+E +A +R +P + PAD ET + IA+ P + L R K+ ++
Sbjct: 123 ALEDIAIMRGLPNMTVIAPADAVETR-AILDQIADYKGPVYMRLGRGKVPVVVD-EGGYT 180
Query: 499 VERG-GYIVSDNSSENKPEIILIGTGTELSLCEGTAKTLRQEGRRVRVVSLVCWRLFDRQ 557
E G ++ D S ++ +I TG ++ A+ L++EG V++ +F +
Sbjct: 181 FEIGKANVLRDGS-----DLTIIATGVMVAEALEAAEILKKEGISAAVIN-----MFTIK 230
Query: 558 PAEYKEKVLPSRVVKR-VSVEA-------GSSVGWREYVGVEG----KVIGV-EEFGASG 604
P + + + +R R V+ E GS+V E + G + IGV + FG SG
Sbjct: 231 PIDEQAILKAARETGRIVTAEEHSIIGGLGSAVA--EVLSENGPTPMRRIGVPDTFGRSG 288
Query: 605 AYLDTFKKYGFTIDNVTKVARSLL 628
+ YG +++ LL
Sbjct: 289 KADELLDYYGLDPESIAARVLELL 312
>gnl|CDD|238318 cd00568, TPP_enzymes, Thiamine pyrophosphate (TPP) enzyme family,
TPP-binding module; found in many key metabolic enzymes
which use TPP (also known as thiamine diphosphate) as a
cofactor. These enzymes include, among others, the E1
components of the pyruvate, the acetoin and the branched
chain alpha-keto acid dehydrogenase complexes.
Length = 168
Score = 60.0 bits (146), Expect = 2e-10
Identities = 35/152 (23%), Positives = 52/152 (34%), Gaps = 34/152 (22%)
Query: 95 TEGIEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHE 154
G +G G+ A+G ALA PD VV CI DG M
Sbjct: 38 RFLTSTGFGAMGYGLPAAIGAALAA---------PDRPVV-----CIAGDGGFMMTGQE- 82
Query: 155 AAALAAHWKLNKLTLIYDDN------------HNTIDGPTSLVLSEDISARFKSLGWNTI 202
A A + L + ++ +N + + + D +A ++ G +
Sbjct: 83 -LATAVRYGLP-VIVVVFNNGGYGTIRMHQEAFYGGRVSGTDLSNPDFAALAEAYGAKGV 140
Query: 203 MVENIHDNLSSFKEALMAAANETKKPTFIRVK 234
VE+ D + AL A A P I VK
Sbjct: 141 RVEDPED----LEAAL-AEALAAGGPALIEVK 167
>gnl|CDD|224076 COG1154, Dxs, Deoxyxylulose-5-phosphate synthase [Coenzyme
metabolism / Lipid metabolism].
Length = 627
Score = 54.1 bits (131), Expect = 1e-07
Identities = 45/184 (24%), Positives = 71/184 (38%), Gaps = 29/184 (15%)
Query: 374 EHAMAGISNGVALHGGGLIPFAA---TFL------IFSD--YMKNSIRLSALSHAGVIYI 422
+HA+ + G+A G+ P A TFL + D + A+ AG++
Sbjct: 368 QHAVT-FAAGLAA--EGMKPVVAIYSTFLQRAYDQLIHDVAIQNLPVTF-AIDRAGIV-- 421
Query: 423 LTHDSIGLGEDGPTHQPVEQLAGLRAVPRLLAFRPADGNETAGSYRVAIANRDVPSVIAL 482
G DGPTHQ + L+ LR +P ++ P D E A+A D P I
Sbjct: 422 --------GADGPTHQGLFDLSFLRCIPNMVIMAPRDEEELRQMLYTALAQDDGPVAIRY 473
Query: 483 SRQKIAANLEGTSADEVERGGYIVSDNSSENKPEIILIGTGTELSLCEGTAKTLRQEGRR 542
R + + +E G + + ++ ++ GT L A+ L G
Sbjct: 474 PRGNGVGVILTPELEPLEIGKGEL----LKEGEKVAILAFGTMLPEALKVAEKLNAYGIS 529
Query: 543 VRVV 546
V VV
Sbjct: 530 VTVV 533
>gnl|CDD|129308 TIGR00204, dxs, 1-deoxy-D-xylulose-5-phosphate synthase. DXP
synthase is a thiamine diphosphate-dependent enzyme
related to transketolase and the pyruvate dehydrogenase
E1-beta subunit. By an acyloin condensation of pyruvate
with glyceraldehyde 3-phosphate, it produces
1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine
diphosphate (TPP), pyridoxal phosphate, and the
isoprenoid building block isopentenyl diphosphate (IPP)
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other, Biosynthesis of cofactors, prosthetic
groups, and carriers, Pyridoxine, Biosynthesis of
cofactors, prosthetic groups, and carriers, Thiamine].
Length = 617
Score = 51.3 bits (123), Expect = 1e-06
Identities = 60/262 (22%), Positives = 105/262 (40%), Gaps = 36/262 (13%)
Query: 294 LNGGLLPGWENALPKWSTSDPLDATRGYSEKCLNQLAKVLPGLIGGSADLASSNKAYLLG 353
L+ G LP ++ALP +S + +S+ L +LAK ++G + + + G
Sbjct: 297 LSTGCLPKSKSALPSYS--------KIFSDT-LCELAKKDNKIVGITPAMPEGS-----G 342
Query: 354 YHDFSQ--PDSPWGRNIRYGVREHAMAGISNGVALHGGGLIPFAATFLIFSDYMKNS--- 408
FS+ PD R + E + G+A+ G PF A I+S +++ +
Sbjct: 343 LDKFSRKFPD----RYFDVAIAEQHAVTFAAGMAI--EGYKPFVA---IYSTFLQRAYDQ 393
Query: 409 -IRLSALSHAGVIYILTHDSIGL-GEDGPTHQPVEQLAGLRAVPRLLAFRPADGNETAGS 466
+ + V++ + D G+ G DG THQ ++ LR +P ++ P+D NE
Sbjct: 394 VVHDVCIQKLPVLFAI--DRAGIVGADGETHQGAFDISYLRCIPNMVIMAPSDENELRQM 451
Query: 467 YRVAIANRDVPSVIALSRQKIAANLEGTSADEVERGGYIVSDNSSENKPEIILIGTGTEL 526
D P + R N G I +I+++G GT +
Sbjct: 452 LYTGYHYDDGPIAVRYPR----GNAVGVELTPEPEKLPIGKSEVLRKGEKILILGFGTLV 507
Query: 527 SLCEGTAKTLRQEGRRVRVVSL 548
A++L ++G VV
Sbjct: 508 PEALEVAESLNEKGIEATVVDA 529
>gnl|CDD|238958 cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosphate (TPP) family,
E1 of PDC_ADC_BCADC subfamily, TPP-binding module;
composed of proteins similar to the E1 components of the
human pyruvate dehydrogenase complex (PDC), the acetoin
dehydrogenase complex (ADC) and the branched chain
alpha-keto acid dehydrogenase/2-oxoisovalerate
dehydrogenase complex (BCADC). PDC catalyzes the
irreversible oxidative decarboxylation of pyruvate to
produce acetyl-CoA in the bridging step between
glycolysis and the citric acid cycle. ADC participates
in the breakdown of acetoin while BCADC participates in
the breakdown of branched chain amino acids. BCADC
catalyzes the oxidative decarboxylation of
4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and
3-methyl-2-oxobutanoate (branched chain 2-oxo acids
derived from the transamination of leucine, valine and
isoleucine).
Length = 293
Score = 47.5 bits (114), Expect = 8e-06
Identities = 45/165 (27%), Positives = 59/165 (35%), Gaps = 24/165 (14%)
Query: 80 CKMGSRTPGH----PENVVTEGIEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVD 135
G H +N G +G V A G ALA ++ D V V
Sbjct: 82 PCKGRGGSMHIGDKEKNFFG-----GNGIVGGQVPLAAGAALA-----LKYRGEDRVAV- 130
Query: 136 HRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGPTSLVL-SEDISARF 194
C DG EG HEA AA WKL + + +N I PTS I+ R
Sbjct: 131 ----CFFGDGATNEGDFHEALNFAALWKLPVIFVCE-NNGYAISTPTSRQTAGTSIADRA 185
Query: 195 KSLGWNTIMVE--NIHDNLSSFKEALMAAANETKKPTFIRVKKMR 237
+ G I V+ ++ + KEA + A PT I R
Sbjct: 186 AAYGIPGIRVDGNDVLAVYEAAKEA-VERARAGGGPTLIEAVTYR 229
>gnl|CDD|225329 COG2609, AceE, Pyruvate dehydrogenase complex, dehydrogenase (E1)
component [Energy production and conversion].
Length = 887
Score = 48.5 bits (116), Expect = 1e-05
Identities = 47/185 (25%), Positives = 73/185 (39%), Gaps = 18/185 (9%)
Query: 27 VLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQYVCLHLAGFQSVQLEDLKRL-----CK 81
V + H + ++ K D V GH Y L G + E L K
Sbjct: 119 VGFNHFFR--AKSEK-DGGDL-VFFQGHASPGIYARAFLEGRLT--EEQLDNFRQEVDGK 172
Query: 82 MGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCI 141
S P HP+ + + + T +G G A+ A +L AR K + D + +
Sbjct: 173 GLSSYP-HPKLMP-DFWQFPTVSMGLGPIQAIYQARFLKYLEARGLKDTS---DQKVWAF 227
Query: 142 MSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGPT--SLVLSEDISARFKSLGW 199
+ DG E S A AA KL+ L + + N +DGP + + +++ F+ GW
Sbjct: 228 LGDGEMDEPESRGAITEAAREKLDNLIFVINCNLQRLDGPVRGNGKIIQELEGIFRGAGW 287
Query: 200 NTIMV 204
N I V
Sbjct: 288 NVIKV 292
Score = 30.4 bits (69), Expect = 4.0
Identities = 46/225 (20%), Positives = 83/225 (36%), Gaps = 32/225 (14%)
Query: 432 EDGPTHQPVEQLAGLRAVPRLLAFRPADGNETAGSYRVAI------ANRDVPSVIALSRQ 485
EDG +H L + +P +++ PA E A + + +V I LS +
Sbjct: 641 EDGHSH-----LQAM-TIPNCISYDPAFAYEVAVIMQDGLRRMYGEGQENVFYYITLSNE 694
Query: 486 KIAANLEGTSADE-VERGGYIVSDNSSENKPEIILIGTGTELSLCEGTAKTLRQE-GRRV 543
A+E + +G Y + + K ++ L+G+G L A+ L ++ G
Sbjct: 695 NYPQPAMPEGAEEGIIKGIYKLETPGGQGKAKVQLLGSGAILREALEAAELLAKDYGVEA 754
Query: 544 RVVSLVCWRLFDR-----------QPAE-----YKEKVLPSR-VVKRVSVEAGSSVGW-R 585
+ S+ + R P E Y +VL + V V+ R
Sbjct: 755 DLWSVTSFDELARDGQAAERWNLLHPTETPRVPYVAQVLNADGPVVAVTDYMKLFAEQIR 814
Query: 586 EYVGVEGKVIGVEEFGASGAYLDTFKKYGFTIDNVTKVARSLLSE 630
V +V+G + FG S + + + + V A S L++
Sbjct: 815 AVVPQRYRVLGTDGFGRSDSRENLRRFFEVDAYYVVVAALSALAK 859
>gnl|CDD|238975 cd02017, TPP_E1_EcPDC_like, Thiamine pyrophosphate (TPP) family, E1
of E. coli PDC-like subfamily, TPP-binding module;
composed of proteins similar to the E1 component of the
Escherichia coli pyruvate dehydrogenase multienzyme
complex (PDC). PDC catalyzes the oxidative
decarboxylation of pyruvate and the subsequent
acetylation of coenzyme A to acetyl-CoA. The E1
component of PDC catalyzes the first step of the
multistep process, using TPP and a divalent cation as
cofactors. E. coli PDC is a homodimeric enzyme.
Length = 386
Score = 46.5 bits (111), Expect = 2e-05
Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 7/106 (6%)
Query: 102 TGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAH 161
T +G G A+ A +L R K + D + + + DG E S A LAA
Sbjct: 117 TVSMGLGPIQAIYQARFNRYLEDRGLKDTS---DQKVWAFLGDGEMDEPESLGAIGLAAR 173
Query: 162 WKLNKLTLIYDDNHNTIDGP---TSLVLSEDISARFKSLGWNTIMV 204
KL+ L + + N +DGP ++ E + F+ GWN I V
Sbjct: 174 EKLDNLIFVVNCNLQRLDGPVRGNGKIIQE-LEGIFRGAGWNVIKV 218
>gnl|CDD|235470 PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synthase;
Provisional.
Length = 580
Score = 47.0 bits (113), Expect = 3e-05
Identities = 49/180 (27%), Positives = 72/180 (40%), Gaps = 42/180 (23%)
Query: 374 EHA---MAGISNGVALHGGGLIPFAA---TFL------IFSDYMKNSIRLSALSHAGVIY 421
+HA AG++ GL P A TFL + D AL + V +
Sbjct: 331 QHAVTFAAGLATE------GLKPVVAIYSTFLQRAYDQVIHDV--------ALQNLPVTF 376
Query: 422 ILTHDSIGL-GEDGPTHQPVEQLAGLRAVPRLLAFRPADGNETAGSYRVAIANRDVPSVI 480
+ D GL G DGPTHQ L+ LR +P ++ P+D NE A+A D P I
Sbjct: 377 AI--DRAGLVGADGPTHQGAFDLSYLRCIPNMVIMAPSDENELRQMLYTALAYDDGPIAI 434
Query: 481 ALSRQKIAANLEGTSADEVER----GGYIVSDNSSENKPEIILIGTGTELSLCEGTAKTL 536
R N G E+E G ++ + ++ ++ GT L+ A+ L
Sbjct: 435 RYPR----GNGVGVELPELEPLPIGKGEVLREGE-----DVAILAFGTMLAEALKAAERL 485
>gnl|CDD|183601 PRK12571, PRK12571, 1-deoxy-D-xylulose-5-phosphate synthase;
Provisional.
Length = 641
Score = 45.9 bits (109), Expect = 6e-05
Identities = 50/186 (26%), Positives = 65/186 (34%), Gaps = 26/186 (13%)
Query: 371 GVREHAMAGISNGVALHGGGLIPFAA---TFL------IFSDYMKNSIRLSALSHAGVIY 421
G+ E + G+A GL PF A TFL + D AL + V +
Sbjct: 367 GIAEQHAVTFAAGLA--AAGLKPFCAVYSTFLQRGYDQLLHDV--------ALQNLPVRF 416
Query: 422 ILTHDSIGL-GEDGPTHQPVEQLAGLRAVPRLLAFRPADGNETAGSYRVAIANRDVPSVI 480
+L D GL G DG TH LA L +P + P D E R A A+ D P +
Sbjct: 417 VL--DRAGLVGADGATHAGAFDLAFLTNLPNMTVMAPRDEAELRHMLRTAAAHDDGPIAV 474
Query: 481 ALSRQKIAANLEGTSADEVERGGYIVSDNSSENKPEIILIGTGTELSLCEGTAKTLRQEG 540
R G I P++ ++ G L C A L EG
Sbjct: 475 RFPR----GEGVGVEIPAEGTILGIGKGRVPREGPDVAILSVGAHLHECLDAADLLEAEG 530
Query: 541 RRVRVV 546
V V
Sbjct: 531 ISVTVA 536
>gnl|CDD|235379 PRK05261, PRK05261, putative phosphoketolase; Provisional.
Length = 785
Score = 43.6 bits (104), Expect = 3e-04
Identities = 51/169 (30%), Positives = 67/169 (39%), Gaps = 50/169 (29%)
Query: 74 EDLKRLCKMGS---RTPGH--PE--NVVTEGIEVTTGPLGQGVANAVGLALAEAHLAARF 126
E + RL K S P H PE + EG G LG +L+ A+ AA F
Sbjct: 111 EGMARLFKQFSFPGGIPSHAAPETPGSIHEG-----GELG--------YSLSHAYGAA-F 156
Query: 127 NKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLT--------L-IYDDNHNT 177
+ PD +V C++ DG A E LA W NK L I N
Sbjct: 157 DNPDLIVA-----CVVGDGEA------ETGPLATSWHSNKFLNPATDGAVLPILHLNGYK 205
Query: 178 IDGPTSLVLS----EDISARFKSLGWNTIMVENIHDNLSSFKEALMAAA 222
I PT +L+ E++ A F+ G+ VE D +E MAAA
Sbjct: 206 IANPT--ILARISDEELEALFRGYGYEPYFVEG-DDPADMHQE--MAAA 249
>gnl|CDD|238960 cd02002, TPP_BFDC, Thiamine pyrophosphate (TPP) family, BFDC
subfamily, TPP-binding module; composed of proteins
similar to Pseudomonas putida benzoylformate
decarboxylase (BFDC). P. putida BFDC plays a role in the
mandelate pathway, catalyzing the conversion of
benzoylformate to benzaldehyde and carbon dioxide. This
enzyme is dependent on TPP and a divalent metal cation
as cofactors.
Length = 178
Score = 40.7 bits (96), Expect = 7e-04
Identities = 25/75 (33%), Positives = 30/75 (40%), Gaps = 17/75 (22%)
Query: 101 TTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAA 160
G LG G+ AVG ALA PD VV I+ DG M I A AA
Sbjct: 47 RGGGLGWGLPAAVGAALA---------NPDRKVV-----AIIGDGSFMYTIQ--ALWTAA 90
Query: 161 HWKLNKLTLIYDDNH 175
+ L +I +N
Sbjct: 91 RYGLPVTVVIL-NNR 104
>gnl|CDD|234139 TIGR03182, PDH_E1_alph_y, pyruvate dehydrogenase E1 component,
alpha subunit. Members of this protein family are the
alpha subunit of the E1 component of pyruvate
dehydrogenase (PDH). This model represents one branch of
a larger family that E1-alpha proteins from
2-oxoisovalerate dehydrogenase, acetoin dehydrogenase,
another PDH clade, etc [Energy metabolism, Pyruvate
dehydrogenase].
Length = 315
Score = 40.6 bits (96), Expect = 0.002
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 10/59 (16%)
Query: 106 GQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKL 164
G V A GLA A ++ D V C DG A +G +E+ +AA WKL
Sbjct: 113 GAQVPLATGLAFAN-----KYRGNDNVTA-----CFFGDGAANQGQFYESFNMAALWKL 161
>gnl|CDD|226466 COG3957, COG3957, Phosphoketolase [Carbohydrate transport and
metabolism].
Length = 793
Score = 41.2 bits (97), Expect = 0.002
Identities = 60/235 (25%), Positives = 88/235 (37%), Gaps = 52/235 (22%)
Query: 13 GHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDR-FVLSAGHGCLLQYVCLHLAGF--- 68
GH G G++ +Y H + ++ + +V+ GHG +L G
Sbjct: 61 GHWGTQPGLS----FIYAHLNRLI----SKYDANMAYVMGPGHGGPAIVANTYLEGTYSE 112
Query: 69 ----QSVQLEDLKRLCKMGSRTPGHPENVV--TEGIEVTTGPLGQGVANAVGLALAEAHL 122
S E L RL K S G +V T G G LG +++A G
Sbjct: 113 MYPDISQDEEGLNRLFKQFSFPGGIGSHVAPETPGSIHEGGELGYALSHAYG-------- 164
Query: 123 AARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDD--------- 173
A F+ PD +V C++ DG A G LA W NK D
Sbjct: 165 -AAFDNPDLIVA-----CVVGDGEAETG------PLATSWHSNKFLNPARDGAVLPILHL 212
Query: 174 NHNTIDGPT--SLVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETK 226
N I+ PT + + E++ A F+ G+ + VE D + LMAA +T
Sbjct: 213 NGYKIENPTVLARISDEELKALFEGYGYEPVFVEG-ADPADMHQ--LMAAVLDTA 264
>gnl|CDD|217227 pfam02780, Transketolase_C, Transketolase, C-terminal domain. The
C-terminal domain of transketolase has been proposed as
a regulatory molecule binding site.
Length = 124
Score = 38.3 bits (90), Expect = 0.002
Identities = 16/116 (13%), Positives = 34/116 (29%), Gaps = 11/116 (9%)
Query: 515 PEIILIGTGTELSLCEGTAKTLRQEGRRVRVVSLVCWRLFDR------QPAEYKEKVLPS 568
++ ++ G+ + A+ L +EG V+ L + D + V+
Sbjct: 10 DDVTIVAYGSMVHEALEAAEELAKEGISAEVIDLRTVKPLDEDTILESVKKTGRLVVVEE 69
Query: 569 RVVKRVSVEAGSSVGWREYVGVEGKV----IGVEEFGASGAYLDTFKKYGFTIDNV 620
VKR + + E +G + G T + +
Sbjct: 70 A-VKRGGFGSEVAAALAEEGFDYLDAPVLRVGGPDTPIPHGPALELAYLGLTAEKI 124
>gnl|CDD|223997 COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex,
dehydrogenase (E1) component, eukaryotic type, alpha
subunit [Energy production and conversion].
Length = 358
Score = 40.3 bits (95), Expect = 0.003
Identities = 28/98 (28%), Positives = 40/98 (40%), Gaps = 11/98 (11%)
Query: 103 GPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHW 162
G +G + A G ALA + D V V DG +G HEA AA W
Sbjct: 136 GIVGTQIPLAAGAALALKYR----GTKDGVAV-----AFFGDGATNQGDFHEALNFAAVW 186
Query: 163 KLNKLTLIYDDNHNTIDGPTSLVLSEDISARFKSLGWN 200
KL + +I +N I P S + +I A ++ +
Sbjct: 187 KLPVVFVIE-NNQYAISVPRSRQTAAEIIAA-RAAAYG 222
>gnl|CDD|223107 COG0028, IlvB, Thiamine pyrophosphate-requiring enzymes
[acetolactate synthase, pyruvate dehydrogenase
(cytochrome), glyoxylate carboligase, phosphonopyruvate
decarboxylase] [Amino acid transport and metabolism /
Coenzyme metabolism].
Length = 550
Score = 39.2 bits (92), Expect = 0.006
Identities = 34/165 (20%), Positives = 56/165 (33%), Gaps = 41/165 (24%)
Query: 101 TTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAA 160
G +G G+ A+G LA PD VV I DG M ++ + A
Sbjct: 406 GLGTMGFGLPAAIGAKLA---------APDRKVV-----AIAGDGGFM--MNGQELETAV 449
Query: 161 HWKLNKLTLIYDDN-------HNTIDGPTSLVLSEDISARF----KSLGWNTIMVENIHD 209
+ L ++ ++ + ++ + F ++ G I VE +
Sbjct: 450 RYGLPVKIVVLNNGGYGMVRQWQELFYGGRYSGTDLGNPDFVKLAEAYGAKGIRVETPEE 509
Query: 210 NLSSFKEALMAAANETKKPTFIRVKKMRERVNWVDRDQFHVIPMV 254
+ +EAL + P I V VD + V PMV
Sbjct: 510 LEEALEEAL-----ASDGPVLIDVV--------VDPE-EAVPPMV 540
>gnl|CDD|233117 TIGR00759, aceE, pyruvate dehydrogenase E1 component, homodimeric
type. Most members of this family are pyruvate
dehydrogenase complex, E1 component. Note: this family
was classified as subfamily rather than equivalog
because it includes a counterexample from Pseudomonas
putida, MdeB, that is active as an E1 component of an
alpha-ketoglutarate dehydrogenase complex rather than a
pyruvate dehydrogase complex. The second pyruvate
dehydrogenase complex E1 protein from Alcaligenes
eutrophus, PdhE, complements an aceE mutant of E. coli
but is not part of a pyruvate dehydrogenase complex
operon, is more similar to the Pseudomonas putida MdeB
than to E. coli AceE, and may have also have a different
primary specificity.
Length = 885
Score = 39.4 bits (92), Expect = 0.007
Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 7/109 (6%)
Query: 99 EVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAAL 158
+ T +G G NA+ A +L R K D + + + DG E S A
Sbjct: 185 QFPTVSMGLGPINAIYQARFMKYLENRGLKDTG---DQKVWAFLGDGEMDEPESKGAITF 241
Query: 159 AAHWKLNKLTLIYDDNHNTIDGP---TSLVLSEDISARFKSLGWNTIMV 204
AA KL+ LT + + N +DGP ++ E + + F+ GWN I V
Sbjct: 242 AAREKLDNLTFVINCNLQRLDGPVRGNGKIIQE-LESLFRGAGWNVIKV 289
>gnl|CDD|201386 pfam00676, E1_dh, Dehydrogenase E1 component. This family uses
thiamine pyrophosphate as a cofactor. This family
includes pyruvate dehydrogenase, 2-oxoglutarate
dehydrogenase and 2-oxoisovalerate dehydrogenase.
Length = 303
Score = 36.1 bits (84), Expect = 0.037
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 10/63 (15%)
Query: 103 GPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHW 162
G +G V G+ALA A++ V + + DG +G EA AA W
Sbjct: 104 GIVGAQVPLGAGIALA-----AKYRGKKEVAI-----TLFGDGATNQGQFFEALNFAALW 153
Query: 163 KLN 165
KL
Sbjct: 154 KLP 156
>gnl|CDD|215152 PLN02269, PLN02269, Pyruvate dehydrogenase E1 component subunit
alpha.
Length = 362
Score = 35.8 bits (83), Expect = 0.052
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 17/79 (21%)
Query: 97 GIEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAA 156
GI PLG G+A A ++NK + V + + DG A +G EA
Sbjct: 138 GIVGAQVPLGAGLA-----------FAQKYNKEENV-----AFALYGDGAANQGQLFEAL 181
Query: 157 ALAAHWKLNKLTLIYDDNH 175
+AA W L + + ++NH
Sbjct: 182 NIAALWDL-PVIFVCENNH 199
>gnl|CDD|177878 PLN02234, PLN02234, 1-deoxy-D-xylulose-5-phosphate synthase.
Length = 641
Score = 36.2 bits (83), Expect = 0.060
Identities = 47/183 (25%), Positives = 74/183 (40%), Gaps = 20/183 (10%)
Query: 371 GVREHAMAGISNGVALHGGGLIPFAATFLIFSDYMKNS----IRLSALSHAGVIYILTHD 426
G+ E + G+A G L PF I+S +M+ + + L V + + D
Sbjct: 405 GIAEQHAVTFAAGLACEG--LKPFCT---IYSSFMQRAYDQVVHDVDLQKLPVRFAI--D 457
Query: 427 SIGL-GEDGPTHQPVEQLAGLRAVPRLLAFRPADGNETAGSYRVAIANRDVPSVIALSR- 484
GL G DGPTH + + +P ++ P+D E A A D PS R
Sbjct: 458 RAGLMGADGPTHCGAFDVTFMACLPNMIVMAPSDEAELFNMVATAAAIDDRPSCFRYHRG 517
Query: 485 QKIAANL-EGTSADEVERG-GYIVSDNSSENKPEIILIGTGTELSLCEGTAKTLRQEGRR 542
I +L G ++ G G I+ D + L+G G+ + C A L + G +
Sbjct: 518 NGIGVSLPPGNKGVPLQIGRGRILRDGE-----RVALLGYGSAVQRCLEAASMLSERGLK 572
Query: 543 VRV 545
+ V
Sbjct: 573 ITV 575
>gnl|CDD|178194 PLN02582, PLN02582, 1-deoxy-D-xylulose-5-phosphate synthase.
Length = 677
Score = 36.0 bits (83), Expect = 0.063
Identities = 46/191 (24%), Positives = 70/191 (36%), Gaps = 36/191 (18%)
Query: 371 GVREHAMAGISNGVALHGGGLIPFAATFLIF-----------SDYMKNSIRLSALSHAGV 419
G+ E + G+A G L PF A + F D K +R A+ AG+
Sbjct: 404 GIAEQHAVTFAAGLACEG--LKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRF-AMDRAGL 460
Query: 420 IYILTHDSIGLGEDGPTHQPVEQLAGLRAVPRLLAFRPADGNETAGSYRVAIANRDVPSV 479
+ G DGPTH + + +P ++ P+D E A A D PS
Sbjct: 461 V----------GADGPTHCGAFDVTYMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSC 510
Query: 480 IALSRQ-----KIAANLEGTSADEVERGGYIVSDNSSENKPEIILIGTGTELSLCEGTAK 534
R ++ N +G EV +G ++ + L+G GT + C A
Sbjct: 511 FRYPRGNGIGVQLPPNNKGIPI-EVGKGRILLEGE------RVALLGYGTAVQSCLAAAS 563
Query: 535 TLRQEGRRVRV 545
L + G V
Sbjct: 564 LLERHGLSATV 574
>gnl|CDD|132230 TIGR03186, AKGDH_not_PDH, alpha-ketoglutarate dehydrogenase.
Several bacterial species have a paralog to homodimeric
form of the pyruvate dehydrogenase E1 component (see
model TIGR00759), often encoded next to L-methionine
gamma-lyase gene (mdeA). The member from a strain of
Pseudomonas putida was shown to act on
alpha-ketobutyrate, which is produced by MdeA.This model
serves as an exception model to TIGR00759, as other
proteins hitting TIGR00759 should be identified as the
pyruvate dehydrogenase E1 component.
Length = 889
Score = 35.6 bits (82), Expect = 0.084
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 15/110 (13%)
Query: 102 TGPLGQGVANAVGLALAEAHLAARF-----NKPDAVVVDHRTYCIMSDGCAMEGISHEAA 156
TG +G G NA+ ARF N+ A + + DG E S A
Sbjct: 188 TGSMGIGPINAI--------YQARFMRYLQNRGLARTEGRKVWGFFGDGEMDEPESIGAL 239
Query: 157 ALAAHWKLNKLTLIYDDNHNTIDGPT--SLVLSEDISARFKSLGWNTIMV 204
+LAA +L+ L + + N +DGP + + +++ ++F GWN I V
Sbjct: 240 SLAARERLDNLVFVINCNLQRLDGPVRGNGRIIDELESQFAGAGWNVIKV 289
>gnl|CDD|225815 COG3276, SelB, Selenocysteine-specific translation elongation
factor [Translation, ribosomal structure and
biogenesis].
Length = 447
Score = 33.9 bits (78), Expect = 0.23
Identities = 14/57 (24%), Positives = 26/57 (45%)
Query: 470 AIANRDVPSVIALSRQKIAANLEGTSADEVERGGYIVSDNSSENKPEIILIGTGTEL 526
+I DV A + Q++ L+G +E+ERG +++ E +I+ L
Sbjct: 217 SIQAHDVDVEEAKAGQRVGLALKGVEKEEIERGDWLLKPEPLEVTTRLIVELEIDPL 273
>gnl|CDD|131231 TIGR02176, pyruv_ox_red, pyruvate:ferredoxin (flavodoxin)
oxidoreductase, homodimeric. This model represents a
single chain form of pyruvate:ferredoxin (or flavodoxin)
oxidoreductase. This enzyme may transfer electrons to
nitrogenase in nitrogen-fixing species. Portions of this
protein are homologous to gamma subunit of the four
subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Length = 1165
Score = 33.2 bits (76), Expect = 0.49
Identities = 34/126 (26%), Positives = 52/126 (41%), Gaps = 23/126 (18%)
Query: 460 GNETAGSYRVAIANRDVPSVIALSRQKIAANLEGTSADEVERGGYIVSDNSSENKPEIIL 519
G E Y +A VP ++ KIA L G S + G + + + II
Sbjct: 224 GREAVNPYYLA-----VPGIVQKYMDKIA-KLTGRSYHLFDYYG------APDAERVIIA 271
Query: 520 IGTGTELSLCEGTAKTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLPSRVVKRVSV--- 576
+G+ E E T L +G +V ++ + +R F AE LP VKR++V
Sbjct: 272 MGSVAET--IEETVDYLNAKGEKVGLLKVRLYRPF---SAETFFAALPK-SVKRIAVLDR 325
Query: 577 --EAGS 580
E G+
Sbjct: 326 TKEPGA 331
>gnl|CDD|107261 cd04509, PBP1_ABC_transporter_GCPR_C_like, Family C of G-protein
coupled receptors and their close homologs, the type I
periplasmic-binding proteins of ATP-binding cassette
transporter-like systems. This CD includes members of
the family C of G-protein coupled receptors and their
close homologs, the type I periplasmic-binding proteins
of ATP-binding cassette transporter-like systems. The
family C GPCR includes glutamate/glycine-gated ion
channels such as the NMDA receptor, G-protein-coupled
receptors, metabotropic glutamate, GABA-B, calcium
sensing, phermone receptors, and atrial natriuretic
peptide-guanylate cyclase receptors. The glutamate
receptors that form cation-selective ion channels,
iGluR, can be classified into three different subgroups
according to their binding-affinity for the agonists
NMDA (N-methyl-D-asparate), AMPA
(alpha-amino-3-dihydro-5-methyl-3-oxo-4-
isoxazolepropionic acid), and kainate. L-glutamate is a
major neurotransmitter in the brain of vertebrates and
acts through either mGluRs or iGluRs. mGluRs subunits
possess seven transmembrane segments and a large
N-terminal extracellular domain. ABC-type
leucine-isoleucine-valine-binding protein (LIVBP) is a
bacterial periplasmic binding protein that has homology
with the amino-terminal domain of the glutamate-receptor
ion channels (iGluRs). The extracellular regions of
iGluRs are made of two PBP-like domains in tandem, a
LIVBP-like domain that constitutes the N terminus -
which is included in this CD - followed by a domain
related to lysine-arginine-ornithine-binding protein
(LAOBP) that belongs to the type II periplasmic binding
fold protein superfamily. The uncharacterized
periplasmic components of various ABC-type transport
systems are included in this group.
Length = 299
Score = 32.5 bits (74), Expect = 0.67
Identities = 31/144 (21%), Positives = 47/144 (32%), Gaps = 22/144 (15%)
Query: 96 EGIEVTTGPLGQGVANAVGLALAEAHLAARFNKP--------DAVVVDHRTYCIMSDGCA 147
EG++ GP+ GVA AV A +A P + + G +
Sbjct: 66 EGVDALVGPVSSGVALAV------APVAEALKIPLISPGATAPGLTDKKGYPYLFRTGPS 119
Query: 148 MEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGPTSLVLSEDISARFKSLGWNTIMVENI 207
E + A + K+ ++YDD+ G L + A FK G + E
Sbjct: 120 DEQQAEALADYIKEYNWKKVAILYDDD---SYGRGLLEAFK---AAFKKKGGTVVGEEYY 173
Query: 208 HDNLSSFKEALMAAANETKKPTFI 231
+ F L KP I
Sbjct: 174 PLGTTDFTSLLQKLKA--AKPDVI 195
>gnl|CDD|177870 PLN02225, PLN02225, 1-deoxy-D-xylulose-5-phosphate synthase.
Length = 701
Score = 32.8 bits (74), Expect = 0.68
Identities = 48/188 (25%), Positives = 72/188 (38%), Gaps = 21/188 (11%)
Query: 366 RNIRYGVREHAMAGISNGVALHGGGLIPFAATFLIFSDYMKNS----IRLSALSHAGVIY 421
R G+ E S G L GGL PF +I S +++ + + V +
Sbjct: 424 RFFNVGMAEQHAVTFSAG--LSSGGLKPFC---IIPSAFLQRAYDQVVHDVDRQRKAVRF 478
Query: 422 ILTHDSIGL-GEDGPTHQPVEQLAGLRAVPRLLAFRPADGNETAGSYRVAIANRDVPSVI 480
++T S GL G DGP +A + ++P ++A PAD +E A D P
Sbjct: 479 VIT--SAGLVGSDGPVQCGAFDIAFMSSLPNMIAMAPADEDELVNMVATAAYVTDRPVCF 536
Query: 481 ALSRQKIAAN--LEGTSAD-EVERGGYIVSDNSSENKPEIILIGTGTELSLCEGTAKTLR 537
R I L T E+ RG +V ++ L+G G + C L
Sbjct: 537 RFPRGSIVNMNYLVPTGLPIEIGRGRVLVEGQ------DVALLGYGAMVQNCLHAHSLLS 590
Query: 538 QEGRRVRV 545
+ G V V
Sbjct: 591 KLGLNVTV 598
>gnl|CDD|218085 pfam04430, DUF498, Protein of unknown function (DUF498/DUF598).
This is a large family of uncharacterized proteins found
in all domains of life. The structure shows a novel fold
with three beta sheets. A dimeric form is found in the
crystal structure. It was suggested that the cleft in
between the two monomers might bing nucleic acid.
Length = 109
Score = 30.6 bits (70), Expect = 0.75
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 512 ENKPEIILIGTGTEL-SLCEGTAKTLRQEGRRVRVVS 547
PE+++IGTG L L + LR+ G V V+
Sbjct: 51 APDPEVLIIGTGARLRFLPPELREALRKLGIGVEVMD 87
>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine
triphosphatases (GTPases). The Ras2 subfamily, found
exclusively in fungi, was first identified in Ustilago
maydis. In U. maydis, Ras2 is regulated by Sql2, a
protein that is homologous to GEFs (guanine nucleotide
exchange factors) of the CDC25 family. Ras2 has been
shown to induce filamentous growth, but the signaling
cascade through which Ras2 and Sql2 regulate cell
morphology is not known. Most Ras proteins contain a
lipid modification site at the C-terminus, with a
typical sequence motif CaaX, where a = an aliphatic
amino acid and X = any amino acid. Lipid binding is
essential for membrane attachment, a key feature of most
Ras proteins.
Length = 190
Score = 31.0 bits (70), Expect = 1.2
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
Query: 225 TKKPTFIRVKKMRERVNWVDRDQFHVIPMVY--------REMQIQTDHGERLEKE 271
T + TF RV++ RE++ V + +P++ E ++ T+ G L +
Sbjct: 81 TSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARR 135
>gnl|CDD|235931 PRK07092, PRK07092, benzoylformate decarboxylase; Reviewed.
Length = 530
Score = 31.1 bits (71), Expect = 1.8
Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 20/64 (31%)
Query: 103 GPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAAL--AA 160
G LG G+ AVG+ALA +P V+ ++ DG AM I AL AA
Sbjct: 407 GGLGYGLPAAVGVALA---------QPGRRVI-----GLIGDGSAMYSIQ----ALWSAA 448
Query: 161 HWKL 164
KL
Sbjct: 449 QLKL 452
>gnl|CDD|238961 cd02003, TPP_IolD, Thiamine pyrophosphate (TPP) family, IolD
subfamily, TPP-binding module; composed of proteins
similar to Rhizobium leguminosarum bv. viciae IolD. IolD
plays an important role in myo-inositol catabolism.
Length = 205
Score = 30.7 bits (70), Expect = 1.8
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
Query: 168 TLIYDDNHNTIDGPTSLVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKK 227
T D + + +L L D +A +SLG V+ I K AL A A + +
Sbjct: 122 TEFRDRDQESGQLDGAL-LPVDFAANARSLGARVEKVKTI----EELKAAL-AKAKASDR 175
Query: 228 PTFIRVK 234
T I +K
Sbjct: 176 TTVIVIK 182
>gnl|CDD|133144 cd05477, gastricsin, Gastricsins, asparate proteases produced in
gastric mucosa. Gastricsin is also called pepsinogen C.
Gastricsins are produced in gastric mucosa of mammals.
It is synthesized by the chief cells in the stomach as
an inactive zymogen. It is self-converted to a mature
enzyme under acidic conditions. Human gastricsin is
distributed throughout all parts of the stomach.
Gastricsin is synthesized as an inactive progastricsin
that has an approximately 40 residue prosequence. It is
self-converting to a mature enzyme being triggered by a
drop in pH from neutrality to acidic conditions. Like
other aspartic proteases, gastricsin are characterized
by two catalytic aspartic residues at the active site,
and display optimal activity at acidic pH. Mature enzyme
has a pseudo-2-fold symmetry that passes through the
active site between the catalytic aspartate residues.
Structurally, aspartic proteases are bilobal enzymes,
each lobe contributing a catalytic aspartate residue,
with an extended active site cleft localized between the
two lobes of the molecule. One lobe may be evolved from
the other through ancient gene-duplication event.
Although the three-dimensional structures of the two
lobes are very similar, the amino acid sequences are
more divergent, except for the conserved catalytic site
motif. This family of aspartate proteases is classified
by MEROPS as the peptidase family A1 (pepsin A, clan
AA).
Length = 318
Score = 31.0 bits (70), Expect = 1.9
Identities = 11/51 (21%), Positives = 25/51 (49%)
Query: 478 SVIALSRQKIAANLEGTSADEVERGGYIVSDNSSENKPEIILIGTGTELSL 528
S++ +Q ++ ++ A + + G Y+V+ N+ +N P + G L
Sbjct: 211 SLLTAPQQVMSTLMQSIGAQQDQYGQYVVNCNNIQNLPTLTFTINGVSFPL 261
>gnl|CDD|213390 cd12147, Cep3_C, C-terminal domain of the Cep3, a subunit of the
yeast centromere-binding factor 3. Cep3, together with
Skp1, Ctf13, and Ndc10, forms the yeast
centromere-binding factor 3 (CBF3) which initiates
kinetochore assembly by binding to the CDEIII locus of
centromeric DNA. Cep3 is comprised of two domains, the
N-terminal DNA-binding module, a Zn2Cys6-cluster,
C-terminal domain, which dimerizes and is believed to be
involved in the recruitment of the Skp1-Ctf1
heterodimer.
Length = 552
Score = 30.0 bits (68), Expect = 4.2
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 11/53 (20%)
Query: 162 WKLNKLTLIYDDNHNTIDGPTSLVLSEDISARFKSLGWNTIMVENIHDNLSSF 214
WKL+K+ IY D SL S + +L +V+N + L F
Sbjct: 362 WKLHKMYFIYYDTS------DSLSKSIHYTKVIIAL-----LVKNFKEKLEFF 403
>gnl|CDD|217223 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme, C-terminal
TPP binding domain.
Length = 151
Score = 28.3 bits (64), Expect = 7.5
Identities = 32/145 (22%), Positives = 47/145 (32%), Gaps = 35/145 (24%)
Query: 103 GPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHW 162
G +G G+ A+G LA +PD VV I DG E A +
Sbjct: 28 GTMGYGLPAAIGAKLA---------RPDRPVV-----AIAGDGGFQ-MNLQELATAVRY- 71
Query: 163 KLNKLTLIYDDN-------------HNTIDGPTSLVLSE-DISARFKSLGWNTIMVENIH 208
L ++ ++ GP L D + ++ G VE+
Sbjct: 72 NLPITVVVLNNGGYGMTRGQQTPFGGGRYSGPDGKDLPPVDFAKLAEAYGAKGARVESPE 131
Query: 209 DNLSSFKEALMAAANETKKPTFIRV 233
+ +EAL A E P I V
Sbjct: 132 E----LEEALKEAL-EHDGPALIDV 151
>gnl|CDD|185502 PTZ00182, PTZ00182, 3-methyl-2-oxobutanate dehydrogenase;
Provisional.
Length = 355
Score = 29.2 bits (66), Expect = 7.7
Identities = 11/41 (26%), Positives = 23/41 (56%)
Query: 517 IILIGTGTELSLCEGTAKTLRQEGRRVRVVSLVCWRLFDRQ 557
+ ++G G+++ + A+ L +EG V+ L R +DR+
Sbjct: 236 VTIVGYGSQVHVALKAAEELAKEGISCEVIDLRSLRPWDRE 276
>gnl|CDD|240161 cd05125, Mth938_2P1-like, Mth938_2P1-like domain. This model
contains sequences that are similar to 2P1, a partially
characterized nuclear protein, which is homologous to
E3-3 from rat and known to be alternatively spliced. Its
function is unknown. This family is part of the Mth938
family, for which structures, but no functional data are
available.
Length = 114
Score = 27.5 bits (62), Expect = 8.1
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 514 KPEIILIGTGTELS-LCEGTAKTLRQEGRRVRVVS 547
+PEI++IGTG + L K ++ G V VV
Sbjct: 54 RPEILVIGTGRKSRPLSPELRKYFKKLGIAVEVVD 88
>gnl|CDD|172567 PRK14077, pnk, inorganic polyphosphate/ATP-NAD kinase; Provisional.
Length = 287
Score = 28.6 bits (64), Expect = 8.9
Identities = 18/52 (34%), Positives = 26/52 (50%)
Query: 482 LSRQKIAANLEGTSADEVERGGYIVSDNSSENKPEIILIGTGTELSLCEGTA 533
LS K+ LE SA+ ++ GY + + + I L G GT +SLC A
Sbjct: 34 LSIYKVEILLEKESAEILDLPGYGLDELFKISDFLISLGGDGTLISLCRKAA 85
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.135 0.405
Gapped
Lambda K H
0.267 0.0843 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 32,667,717
Number of extensions: 3279200
Number of successful extensions: 3020
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2941
Number of HSP's successfully gapped: 66
Length of query: 630
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 527
Effective length of database: 6,369,140
Effective search space: 3356536780
Effective search space used: 3356536780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.5 bits)