RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 006816
(630 letters)
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate,
plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP:
c.36.1.6 c.36.1.10 c.48.1.1
Length = 675
Score = 984 bits (2546), Expect = 0.0
Identities = 348/654 (53%), Positives = 450/654 (68%), Gaps = 30/654 (4%)
Query: 1 MLIVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQY 60
L +DAV+ A +GHPG+ +G A +G+VLY M+YNP+N WFNRDRFVLSAGHGC+LQY
Sbjct: 25 FLAIDAVEKANSGHPGLPMGCAPMGHVLYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQY 84
Query: 61 VCLHLAGFQSVQLEDLKRLCKMGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEA 120
LHLAG+ SV+ EDLK+ + GSRTPGHPEN T G+EVTTGPLGQG+ANAVGLALAE
Sbjct: 85 ALLHLAGYDSVKEEDLKQFRQWGSRTPGHPENFETPGVEVTTGPLGQGIANAVGLALAEK 144
Query: 121 HLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDG 180
HLAARFNKPD+ +VDH TY I+ DGC MEGI++EA +LA HW L KL YDDNH +IDG
Sbjct: 145 HLAARFNKPDSEIVDHYTYVILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDNHISIDG 204
Query: 181 PTSLVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVK------ 234
T + +ED+S RF++LGW+TI V+N + + A+ A T KPT I+V
Sbjct: 205 DTEIAFTEDVSTRFEALGWHTIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIKVTTTIGFG 264
Query: 235 ---------------------KMRERVNWVDRDQFHVIPMVYREMQIQTDHGERLEKEWC 273
R+ + W D F V V T G LE +W
Sbjct: 265 SPNKANSYSVHGSALGAKEVEATRQNLGW-PYDTFFVPEDVKSHWSRHTPEGAALEADWN 323
Query: 274 SKVYNYRSKYPHEGAELDLLLNGGLLPGWENALPKWSTSDPLDATRGYSEKCLNQLAKVL 333
+K Y KY + A L ++ G L GW +ALPK++ P DATR S++CLN LA V+
Sbjct: 324 AKFAEYEKKYADDAATLKSIITGELPTGWVDALPKYTPESPGDATRNLSQQCLNALANVV 383
Query: 334 PGLIGGSADLASSNKAYLLGYHDFSQPDSPWGRNIRYGVREHAMAGISNGVALHGGGLIP 393
PGLIGGSADLASSN L + DF Q D+ RN+R+GVREH M I NG+ALH G +P
Sbjct: 384 PGLIGGSADLASSNMTLLKMFGDF-QKDTAEERNVRFGVREHGMGAICNGIALHSPGFVP 442
Query: 394 FAATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAVPRLL 453
+ ATF +F+DYM+ ++R+SALS AGVIY++THDSIGLGEDGPTHQP+E L RA+P +L
Sbjct: 443 YCATFFVFTDYMRGAMRISALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLVSFRAMPNIL 502
Query: 454 AFRPADGNETAGSYRVAIANRDVPSVIALSRQKIAANLEGTSADEVERGGYIVSDNSSEN 513
RPADGNETAG+Y+VA+ NR PS++ALSRQK+ +L GTS + VE+GGY +SDNS+ N
Sbjct: 503 MLRPADGNETAGAYKVAVLNRKRPSILALSRQKL-PHLPGTSIEGVEKGGYTISDNSTGN 561
Query: 514 KPEIILIGTGTELSLCEGTAKTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLPSRVVKR 573
KP++I++GTG+EL + A LR+EG+ VRVVS V W LFD Q EYKE VLP+ V R
Sbjct: 562 KPDLIVMGTGSELEIAAKAADELRKEGKTVRVVSFVSWELFDEQSDEYKESVLPAAVTAR 621
Query: 574 VSVEAGSSVGWREYVGVEGKVIGVEEFGASGAYLDTFKKYGFTIDNVTKVARSL 627
+S+EAGS++GW++YVG +GK IG+++FGAS +K+YG T++++ A+S
Sbjct: 622 ISIEAGSTLGWQKYVGAQGKAIGIDKFGASAPAGTIYKEYGITVESIIAAAKSF 675
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A
{Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10
c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A*
1tkc_A*
Length = 680
Score = 937 bits (2424), Expect = 0.0
Identities = 278/660 (42%), Positives = 384/660 (58%), Gaps = 42/660 (6%)
Query: 1 MLIVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQY 60
+L VD V A +GHPG LGMA +VL+ M+ NP N W NRDRFVLS GH L Y
Sbjct: 17 ILAVDTVSKANSGHPGAPLGMAPAAHVLWSQ-MRMNPTNPDWINRDRFVLSNGHAVALLY 75
Query: 61 VCLHLAGFQSVQLEDLKRLCKMGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEA 120
LHL G+ + +EDLK+ ++GSRTPGHPE G+EVTTGPLGQG++NAVG+A+A+A
Sbjct: 76 SMLHLTGY-DLSIEDLKQFRQLGSRTPGHPE-FELPGVEVTTGPLGQGISNAVGMAMAQA 133
Query: 121 HLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDG 180
+LAA +NKP + D+ TY + DGC EGIS EA++LA H KL L IYDDN TIDG
Sbjct: 134 NLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYDDNKITIDG 193
Query: 181 PTSLVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVK------ 234
TS+ ED++ R+++ GW + VEN +++L+ +A+ A KPT I++
Sbjct: 194 ATSISFDEDVAKRYEAYGWEVLYVENGNEDLAGIAKAIAQAKLSKDKPTLIKMTTTIGYG 253
Query: 235 --------------------KMRERVNWVDRDQFHVIPMVYREM-QIQTDHGERLEKEWC 273
+++ + + F V VY + G +W
Sbjct: 254 SLHAGSHSVHGAPLKADDVKQLKSKFGFNPDKSFVVPQEVYDHYQKTILKPGVEANNKWN 313
Query: 274 SKVYNYRSKYPHEGAELDLLLNGGLLPGWENALPKWSTSDPLDATRGYSEKCLNQLAKVL 333
Y+ K+P GAEL L+G L WE+ LP ++ D ATR SE L + L
Sbjct: 314 KLFSEYQKKFPELGAELARRLSGQLPANWESKLPTYTAKDSAVATRKLSETVLEDVYNQL 373
Query: 334 PGLIGGSADLASSNKAYLLGYHDFSQP----DSPWGRNIRYGVREHAMAGISNGVALHGG 389
P LIGGSADL SN DF P + GR IRYG+REHAM I NG++ G
Sbjct: 374 PELIGGSADLTPSNLTRWKEALDFQPPSSGSGNYSGRYIRYGIREHAMGAIMNGISAFGA 433
Query: 390 GLIPFAATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAV 449
P+ TFL F Y ++RLSALS VI++ THDSIG+GEDGPTHQP+E LA R++
Sbjct: 434 NYKPYGGTFLNFVSYAAGAVRLSALSGHPVIWVATHDSIGVGEDGPTHQPIETLAHFRSL 493
Query: 450 PRLLAFRPADGNETAGSYRVAIANRDVPSVIALSRQKIAANLEGTSADEVERGGYIVSDN 509
P + +RPADGNE + +Y+ ++ ++ PS+IALSRQ + LEG+S + +GGY++ D
Sbjct: 494 PNIQVWRPADGNEVSAAYKNSLESKHTPSIIALSRQNL-PQLEGSSIESASKGGYVLQDV 552
Query: 510 SSENKPEIILIGTGTELSLCEGTAKTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLPSR 569
+ P+IIL+ TG+E+SL AKTL + + RVVSL + FD+QP EY+ VLP
Sbjct: 553 A---NPDIILVATGSEVSLSVEAAKTLAAKNIKARVVSLPDFFTFDKQPLEYRLSVLPDN 609
Query: 570 VVKRVSVEAGSSVGWREYVGVEGKVIGVEEFGASGAYLDTFKKYGFTIDNVTKVARSLLS 629
V +SVE ++ W +Y + G++ FGASG + FK +GFT + V + A+ ++
Sbjct: 610 -VPIMSVEVLATTCWGKYA---HQSFGIDRFGASGKAPEVFKFFGFTPEGVAERAQKTIA 665
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase,
structural genomics, center for structural genomics of
infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A
{Bacillus anthracis} PDB: 3hyl_A*
Length = 690
Score = 936 bits (2422), Expect = 0.0
Identities = 282/659 (42%), Positives = 394/659 (59%), Gaps = 38/659 (5%)
Query: 1 MLIVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQY 60
L +DA++ A +GHPGM +G A + Y L+ MK+NP N WFNRDRFVLSAGHG +L Y
Sbjct: 39 TLSIDAIEKANSGHPGMPMGAAPMAYTLWTQFMKHNPNNPTWFNRDRFVLSAGHGSMLLY 98
Query: 61 VCLHLAGFQSVQLEDLKRLCKMGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEA 120
LHL+G+ V ++DLK + GS+TPGHPE T G++ TTGPLGQG+A AVG+A+AE
Sbjct: 99 SLLHLSGY-DVTMDDLKNFRQWGSKTPGHPEYGHTAGVDATTGPLGQGIATAVGMAMAER 157
Query: 121 HLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDG 180
HLAA++N+ +VDH TY I DG MEG+S EA++LAAH +L +L ++YD N ++DG
Sbjct: 158 HLAAKYNRDAYNIVDHYTYAICGDGDLMEGVSAEASSLAAHLQLGRLVVLYDSNDISLDG 217
Query: 181 PTSLVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVK------ 234
+ SE + R+K+ GW I VE+ +D + + +A+ A + K+PT I V+
Sbjct: 218 DLNRSFSESVEDRYKAYGWQVIRVEDGND-IEAIAKAIEEAKADEKRPTLIEVRTTIGFG 276
Query: 235 ---------------------KMRERVNWVDRDQFHVIPMVYREMQIQT-DHGERLEKEW 272
+E W FHV VY + D GE + EW
Sbjct: 277 SPNKSGKSASHGSPLGVEETKLTKEAYAWTAEQDFHVAEEVYENFRKTVQDVGETAQAEW 336
Query: 273 CSKVYNYRSKYPHEGAELDLLLNGGLLPGWENALPKWSTSDPLDATRGYSEKCLNQLAKV 332
+ + Y YP EL +NG L GWE LP + ATR S +N +A+
Sbjct: 337 NTMLGEYAQAYPELANELQAAMNGLLPEGWEQNLPTYELGSKA-ATRNSSGAVINAIAES 395
Query: 333 LPGLIGGSADLASSNKAYLLGYHDFSQPDSPWGRNIRYGVREHAMAGISNGVALHGGGLI 392
+P GGSADLA SNK Y+ DF D G+NI YGVRE AM NG+ALHGG L
Sbjct: 396 VPSFFGGSADLAGSNKTYMNNEKDF-TRDDYSGKNIWYGVREFAMGAAMNGIALHGG-LK 453
Query: 393 PFAATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAVPRL 452
+ TF +FSDY++ +IRL+AL V Y+ THDSI +GEDGPTH+P+EQLA LRA+P +
Sbjct: 454 TYGGTFFVFSDYLRPAIRLAALMQLPVTYVFTHDSIAVGEDGPTHEPIEQLAALRAMPNV 513
Query: 453 LAFRPADGNETAGSYRVAIANRDVPSVIALSRQKIAANLEGT---SADEVERGGYIVSDN 509
RPADGNE+ ++R+A+ + + P+ + L+RQ + LEG + ++V +G Y+VS
Sbjct: 514 SVIRPADGNESVAAWRLALESTNKPTALVLTRQDL-PTLEGAKDDTYEKVAKGAYVVSA- 571
Query: 510 SSENKPEIILIGTGTELSLCEGTAKTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLPSR 569
S + ++IL+ TG+E+SL K L +G VVS+ F+ Q AEYKE VLP
Sbjct: 572 SKKETADVILLATGSEVSLAVEAQKALAVDGVDASVVSMPSMDRFEAQTAEYKESVLPKA 631
Query: 570 VVKRVSVEAGSSVGWREYVGVEGKVIGVEEFGASGAYLDTFKKYGFTIDNVTKVARSLL 628
V KR ++E G++ GW YVG+EG V+G++ FGAS ++YGFT++NV + + +L
Sbjct: 632 VTKRFAIEMGATFGWHRYVGLEGDVLGIDTFGASAPGEKIMEEYGFTVENVVRKVKEML 690
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium
tuberculosis}
Length = 700
Score = 932 bits (2412), Expect = 0.0
Identities = 261/671 (38%), Positives = 370/671 (55%), Gaps = 47/671 (7%)
Query: 1 MLIVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQY 60
+L DAVQ GHPG A+ +A + Y L++ M+++P + W RDRFVLSAGH L Y
Sbjct: 32 VLAADAVQKVGNGHPGTAMSLAPLAYTLFQRTMRHDPSDTHWLGRDRFVLSAGHSSLTLY 91
Query: 61 VCLHLAGFQSVQLEDLKRLCKMGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEA 120
+ L+L GF ++L D++ L GS+TPGHPE T G+E+TTGPLGQG+A+AVG+A+A
Sbjct: 92 IQLYLGGF-GLELSDIESLRTWGSKTPGHPEFRHTPGVEITTGPLGQGLASAVGMAMASR 150
Query: 121 HLAARFN---KPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNT 177
+ F+ +P A DH Y I SDG EG++ EA++LAA +L L + YD N +
Sbjct: 151 YERGLFDPDAEPGASPFDHYIYVIASDGDIEEGVTSEASSLAAVQQLGNLIVFYDRNQIS 210
Query: 178 IDGPTSLVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVK--- 234
I+ T++ L ED +AR+++ GW+ VE + + +EA+ A T +P+FI ++
Sbjct: 211 IEDDTNIALCEDTAARYRAYGWHVQEVEGGEN-VVGIEEAIANAQAVTDRPSFIALRTVI 269
Query: 235 ------------------------KMRERVNWVDRDQFHVIPMVYREMQIQTDHGERLEK 270
+++ V + F V V + G++ +
Sbjct: 270 GYPAPNLMDTGKAHGAALGDDEVAAVKKIVGFDPDKTFQVREDVLTHTRGLVARGKQAHE 329
Query: 271 EWCSKVYNYRSKYPHEGAELDLLLNGGLLPGWENALPKWSTSDPLDATRGYSEKCLNQLA 330
W + + + P A LD LL L GW+ LP W ATR S L+ L
Sbjct: 330 RWQLEFDAWARREPERKALLDRLLAQKLPDGWDADLPHWEPGSKALATRAASGAVLSALG 389
Query: 331 KVLPGLIGGSADLASSNKAYLLGYHDFSQPD--------SPWGRNIRYGVREHAMAGISN 382
LP L GGSADLA SN + G F P +GR + +GVREHAM I +
Sbjct: 390 PKLPELWGGSADLAGSNNTTIKGADSFGPPSISTKEYTAHWYGRTLHFGVREHAMGAILS 449
Query: 383 GVALHGGGLIPFAATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQ 442
G+ LHG + TFL FSDYM+ ++RL+AL IY+ THDSIGLGEDGPTHQP+E
Sbjct: 450 GIVLHGP-TRAYGGTFLQFSDYMRPAVRLAALMDIDTIYVWTHDSIGLGEDGPTHQPIEH 508
Query: 443 LAGLRAVPRLLAFRPADGNETAGSYRVAIANRDV--PSVIALSRQKIAANLEGTSADEVE 500
L+ LRA+PRL RPAD NETA ++R +A R+ P + L+RQ + L+GT A+ V
Sbjct: 509 LSALRAIPRLSVVRPADANETAYAWRTILARRNGSGPVGLILTRQGV-PVLDGTDAEGVA 567
Query: 501 RGGYIVSDNS---SENKPEIILIGTGTELSLCEGTAKTLRQEGRRVRVVSLVCWRLFDRQ 557
RGGY++SD +P++ILI TG+E+ L L RVVS+ C F+ Q
Sbjct: 568 RGGYVLSDAGGLQPGEEPDVILIATGSEVQLAVAAQTLLADNDILARVVSMPCLEWFEAQ 627
Query: 558 PAEYKEKVLPSRVVKRVSVEAGSSVGWREYVGVEGKVIGVEEFGASGAYLDTFKKYGFTI 617
P EY++ VLP V RV+VEAG + W + VG G+++ +E +G S + F++YGFT
Sbjct: 628 PYEYRDAVLPPTVSARVAVEAGVAQCWHQLVGDTGEIVSIEHYGESADHKTLFREYGFTA 687
Query: 618 DNVTKVARSLL 628
+ V A L
Sbjct: 688 EAVAAAAERAL 698
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium,
metal-binding, thiamine pyrophosphate, transferase; HET:
T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6
c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Length = 669
Score = 921 bits (2382), Expect = 0.0
Identities = 267/663 (40%), Positives = 375/663 (56%), Gaps = 43/663 (6%)
Query: 1 MLIVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQY 60
L +DAVQ AK+GHPG +GMA++ VL+R +K+NP+N W +RDRFVLS GHG +L Y
Sbjct: 13 ALSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLKHNPQNPSWADRDRFVLSNGHGSMLIY 72
Query: 61 VCLHLAGFQSVQLEDLKRLCKMGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEA 120
LHL G+ + +E+LK ++ S+TPGHPE T G+E TTGPLGQG+ANAVG+A+AE
Sbjct: 73 SLLHLTGY-DLPMEELKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEK 131
Query: 121 HLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDG 180
LAA+FN+P +VDH TY M DGC MEGISHE +LA KL KL YDDN +IDG
Sbjct: 132 TLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGISIDG 191
Query: 181 PTSLVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVK------ 234
++D + RF++ GW+ I + HD +S K A+ A T KP+ + K
Sbjct: 192 HVEGWFTDDTAMRFEAYGWHVIRDIDGHD-AASIKRAVEEARAVTDKPSLLMCKTIIGFG 250
Query: 235 ---------------------KMRERVNWVDRDQFHVIPMVYREMQIQTDHGERLEKEWC 273
RE++ W F + +Y + + G+ E W
Sbjct: 251 SPNKAGTHDSHGAPLGDAEIALTREQLGW-KYAPFEIPSEIYAQWD-AKEAGQAKESAWN 308
Query: 274 SKVYNYRSKYPHEGAELDLLLNGGLLPGWENALP----KWSTSDPLDATRGYSEKCLNQL 329
K Y YP E AE + G + ++ K + A+R S+ +
Sbjct: 309 EKFAAYAKAYPQEAAEFTRRMKGEMPSDFDAKAKEFIAKLQANPAKIASRKASQNAIEAF 368
Query: 330 AKVLPGLIGGSADLASSNKAYLLGYHDFSQPDSPWGRNIRYGVREHAMAGISNGVALHGG 389
+LP +GGSADLA SN G + + G I YGVRE M I+NG++LHGG
Sbjct: 369 GPLLPEFLGGSADLAPSNLTLWSGSKAIN--EDAAGNYIHYGVREFGMTAIANGISLHGG 426
Query: 390 GLIPFAATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAV 449
+P+ +TFL+F +Y +N++R++AL + + THDSIGLGEDGPTHQPVEQ+A LR
Sbjct: 427 -FLPYTSTFLMFVEYARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVT 485
Query: 450 PRLLAFRPADGNETAGSYRVAIANRDVPSVIALSRQKIAANLEGT--SADEVERGGYIVS 507
P + +RP D E+A +++ + +D P+ + LSRQ + A E T + RGGY++
Sbjct: 486 PNMSTWRPCDQVESAVAWKYGVERQDGPTALILSRQNL-AQQERTEEQLANIARGGYVLK 544
Query: 508 DNSSENKPEIILIGTGTELSLCEGTAKTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLP 567
D +PE+I I TG+E+ L + L EG + RVVS+ FD+Q A Y+E VLP
Sbjct: 545 D--CAGQPELIFIATGSEVELAVAAYEKLTAEGVKARVVSMPSTDAFDKQDAAYRESVLP 602
Query: 568 SRVVKRVSVEAGSSVGWREYVGVEGKVIGVEEFGASGAYLDTFKKYGFTIDNVTKVARSL 627
V RV+VEAG + W +YVG+ G ++G+ FG S F+++GFT+DNV A+ L
Sbjct: 603 KAVTARVAVEAGIADYWYKYVGLNGAIVGMTTFGESAPAELLFEEFGFTVDNVVAKAKEL 662
Query: 628 LSE 630
L
Sbjct: 663 LHH 665
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine
diphosphate binding domain, transferase; HET: TPP; 2.22A
{Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10
c.48.1.1
Length = 673
Score = 920 bits (2380), Expect = 0.0
Identities = 279/656 (42%), Positives = 373/656 (56%), Gaps = 43/656 (6%)
Query: 1 MLIVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQY 60
L D VQ K+GHPG +GMA + VL+ MKYN ++ W +RDRFV+S GHGC LQY
Sbjct: 15 CLAADIVQGGKSGHPGTPMGMAPMSAVLWTEVMKYNSQDPDWVDRDRFVMSNGHGCALQY 74
Query: 61 VCLHLAGFQSVQLEDLKRLCKMGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEA 120
LH+AG+ ++ ++DLK + GSRTPGHPE VT G+EVTTGPLGQG+ANAVGLA+AEA
Sbjct: 75 ALLHMAGY-NLTMDDLKGFRQDGSRTPGHPERFVTPGVEVTTGPLGQGIANAVGLAIAEA 133
Query: 121 HLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDG 180
HLAA FN+P +VDH TY DGC MEG+ EA +LA H L KL +IYD N+ +IDG
Sbjct: 134 HLAATFNRPGYNIVDHYTYVYCGDGCLMEGVCQEALSLAGHLALEKLIVIYDSNYISIDG 193
Query: 181 PTSLVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVK------ 234
TSL +E ++ ++G++ I V+N + ++AL A KP I
Sbjct: 194 STSLSFTEQCHQKYVAMGFHVIEVKNGDTDYEGLRKALAEAKATKGKPKMIVQTTTIGFG 253
Query: 235 --------------------KMRERVNWVDRDQFHVIPMVYREMQIQTDHGERLEKEWCS 274
++ + + ++ V V ++ D +K W
Sbjct: 254 SSKQGTEKVHGAPLGEEDIANIKAKFGRDPQKKYDVDDDVRAVFRMHIDKCSAEQKAWEE 313
Query: 275 KVYNYRSKYPHEGAELDLLLNGGLLPGWENALPKWSTSDPLDATRGYSEKCLNQLAKVLP 334
+ Y + +P EGA + G L GWE LP T+ ATR SE CL L +P
Sbjct: 314 LLAKYTAAFPAEGAAFVAQMRGELPSGWEAKLP---TNSSAIATRKASENCLAVLFPAIP 370
Query: 335 GLIGGSADLASSNKAYL--LGYHDFSQPDSPWGRNIRYGVREHAMAGISNGVALHGGGLI 392
L+GGSADL SN DF S GR IR+GVREHAM I NG+ H G+I
Sbjct: 371 ALMGGSADLTPSNLTRPASANLVDF-SSSSKEGRYIRFGVREHAMCAILNGLDAH-DGII 428
Query: 393 PFAATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAVPRL 452
PF TFL F Y ++RL+A+SH VIY+ THDSIG+GEDGPTHQPVE +A LRA+P L
Sbjct: 429 PFGGTFLNFIGYALGAVRLAAISHHRVIYVATHDSIGVGEDGPTHQPVELVAALRAMPNL 488
Query: 453 LAFRPADGNETAGSYRVAIANRDVPSVIALSRQKIAANLEGTSADEVERGGYIVSDNSSE 512
RP+D ET+G++ VA+++ P+V+ LSRQ G+S + V G Y V D
Sbjct: 489 QVIRPSDQTETSGAWAVALSSIHTPTVLCLSRQNT-EPQSGSSIEGVRHGAYSVVDVP-- 545
Query: 513 NKPEIILIGTGTELSLCEGTAKTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLPSRVVK 572
+++++ +G+E+SL AK L E RVRVVS+ C LFD QP Y++ VLP+ V
Sbjct: 546 -DLQLVIVASGSEVSLAVDAAKALSGEL-RVRVVSMPCQELFDAQPDTYRQAVLPAG-VP 602
Query: 573 RVSVEAGSSVGWREYVGVEGKVIGVEEFGASGAYLDTFKKYGFTIDNVTKVARSLL 628
VSVEA S GW +Y +G+ FGAS +KK+G T++ V + R L
Sbjct: 603 VVSVEAYVSFGWEKYS---HAHVGMSGFGASAPAGVLYKKFGITVEEVVRTGRELA 655
>2e6k_A Transketolase; structural genomics, NPPSFA, national project
protein structural and functional analyses; 2.09A
{Thermus thermophilus}
Length = 651
Score = 913 bits (2363), Expect = 0.0
Identities = 286/654 (43%), Positives = 392/654 (59%), Gaps = 45/654 (6%)
Query: 1 MLIVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQY 60
L +DAV+ A++GHPGM +GMA + Y+L+R M++NP + W +RDRFVLSAGHG +L Y
Sbjct: 17 FLAIDAVEKARSGHPGMPMGMAPLAYLLFREVMRHNPLDPDWPDRDRFVLSAGHGSMLLY 76
Query: 61 VCLHLAGFQSVQLEDLKRLCKMGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEA 120
LHL G+ + LE+LK + GS+TPGHPE T G+EVTTGPLGQG++ AVGLALAE
Sbjct: 77 AVLHLTGY-DLPLEELKSFRQWGSKTPGHPERGHTPGVEVTTGPLGQGISTAVGLALAER 135
Query: 121 HLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDG 180
LAA FN+P VVVDH TY + SDG MEG+S EAA+LA HW L+KL + +DDN +IDG
Sbjct: 136 KLAAEFNRPGHVVVDHYTYVLASDGDLMEGVSGEAASLAGHWGLSKLIVFWDDNRISIDG 195
Query: 181 PTSLVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVK------ 234
PT L +ED+ AR+++ GW T+ VE+++D L + ++A+ A ++PT I V+
Sbjct: 196 PTDLAFTEDVLARYRAYGWQTLRVEDVND-LEALRKAI-KLAKLDERPTLIAVRSHIGFG 253
Query: 235 --------------------KMRERVNWVDRDQFHVIPMVYREMQIQTDHGERLEKEWCS 274
R + W F V VYR M ++ + G ++ W
Sbjct: 254 SPKQDSAKAHGEPLGPEAVEATRRNLGW-PYPPFVVPEEVYRHMDMR-EKGRAWQEAWEK 311
Query: 275 KVYNYRSKYPHEGAELDLLLNGGLLPGWENALPKWSTSDPLDATRGYSEKCLNQLAKVLP 334
+ Y YP EL L G LP P + D ATR S + LN LA LP
Sbjct: 312 ALEAYARAYPDLHQELMRRLRGE-LPPLPEEPPSF---DKPIATRAASGRALNLLAPRLP 367
Query: 335 GLIGGSADLASSNKAYLLGYHDFSQPDSPWGRNIRYGVREHAMAGISNGVALHGGGLIPF 394
L+GGSADL SN G DF +P GR + +GVREHAM I NG+ LH GG +
Sbjct: 368 ELLGGSADLTPSNNTKAEGMEDF-SRANPLGRYLHFGVREHAMGAILNGLNLH-GGYRAY 425
Query: 395 AATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAVPRLLA 454
TFL+FSDYM+ +IRL+AL +++ THDSI LGEDGPTHQPVE L LRA+P L
Sbjct: 426 GGTFLVFSDYMRPAIRLAALMGVPTVFVFTHDSIALGEDGPTHQPVEHLMSLRAMPNLFV 485
Query: 455 FRPADGNETAGSYRVAIANRDVPSVIALSRQKIAANLEGTSADEVERGGYIVSDNSSENK 514
RPAD ET ++ VA+ ++ P+ + L+RQ + L A + RGGY++ D +
Sbjct: 486 IRPADAYETFYAWLVALRRKEGPTALVLTRQAV-PLLSPEKARGLLRGGYVLEDVE---E 541
Query: 515 PEIILIGTGTELSLCEGTAKTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLPSRVVKRV 574
P+ +L+ TG+E+ L LR++G RVRVVSL + LF QP Y+++VLP + V
Sbjct: 542 PQGVLVATGSEVHLALRAQALLREKGVRVRVVSLPSFELFAAQPEAYRKEVLPPG-LPVV 600
Query: 575 SVEAGSSVGWREYVGVEGKVIGVEEFGASGAYLDTFKKYGFTIDNVTKVARSLL 628
+VEAG+S+GW Y KV+ ++ FGAS Y + +++ GFT + V + SL+
Sbjct: 601 AVEAGASLGWERYA---HKVVALDRFGASAPYPEVYERLGFTPERVAEAFLSLV 651
>3uk1_A Transketolase; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, thiamine
pyrophosphate; 2.15A {Burkholderia thailandensis} PDB:
3upt_A*
Length = 711
Score = 910 bits (2354), Expect = 0.0
Identities = 289/667 (43%), Positives = 387/667 (58%), Gaps = 47/667 (7%)
Query: 1 MLIVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQY 60
L +DAVQ A +GHPGM +GMAE+G L+ +K+NP N W +RDRFVLS GHG +L Y
Sbjct: 54 ALAMDAVQQANSGHPGMPMGMAEIGVALWSRHLKHNPTNPHWADRDRFVLSNGHGSMLLY 113
Query: 61 VCLHLAGFQSVQLEDLKRLCKMGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEA 120
LHL G+ + +E+LK ++ S+TPGHPE +T G+E TTGPLGQG+ANAVG+AL EA
Sbjct: 114 SLLHLTGY-DLPIEELKNFRQLHSKTPGHPEYGITPGVETTTGPLGQGLANAVGMALGEA 172
Query: 121 HLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDG 180
LAA FN+ DA +VDH TY + DGC MEGISHEA +LA KLNKL +YDDN +IDG
Sbjct: 173 LLAAEFNRDDAKIVDHHTYVFLGDGCLMEGISHEACSLAGTLKLNKLIALYDDNGISIDG 232
Query: 181 PTSLVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVK------ 234
+D RF++ GWN I N HD + + A+ A A + KP+ I K
Sbjct: 233 DVVNWFHDDTPKRFEAYGWNVIPNVNGHD-VDAIDAAI-AKAKRSDKPSLICCKTRIGNG 290
Query: 235 ---------------------KMRERVNWVDRDQFHVIPMVYREMQIQTDHGERLEKEWC 273
K RE + W F + VY + G+R E +W
Sbjct: 291 AATKAGGHDVHGAPLGADEIAKTREALGW-TWAPFVIPQEVYAAWD-AKEAGKRSEDDWN 348
Query: 274 SKVYNYRSKYPHEGAELDLLLNGGLLPGWENALP----KWSTSDPLDATRGYSEKCLNQL 329
+ YR+KYP E AE + + G L W + ATR S++ + L
Sbjct: 349 AAFAQYRAKYPAEAAEFERRMAGTLPADWAAKAAAIVAGANERGETVATRKASQQTIEGL 408
Query: 330 AKVLPGLIGGSADLASSNKAYLLGYHDFS----QPDSPWGRNIRYGVREHAMAGISNGVA 385
A VLP L+GGSADL SN P WG +I YGVRE M+ NG+
Sbjct: 409 AAVLPELLGGSADLTGSNLTNWKASKAVRANADGPGVQWGNHINYGVREFGMSAAINGLV 468
Query: 386 LHGGGLIPFAATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQLAG 445
LHGG PF TFL FSDY +N++R++AL I++ THDSIGLGEDGPTHQ VE +A
Sbjct: 469 LHGG-YKPFGGTFLTFSDYSRNALRVAALMKVPSIFVFTHDSIGLGEDGPTHQSVEHVAS 527
Query: 446 LRAVPRLLAFRPADGNETAGSYRVAIANRDVPSVIALSRQKIAANLEGT--SADEVERGG 503
LR +P L +RPAD ETA ++ A+A++ PS + SRQ + A T VE+GG
Sbjct: 528 LRLIPNLDVWRPADTVETAVAWTYAVAHQH-PSCLIFSRQNL-AFNARTDAQLANVEKGG 585
Query: 504 YIVSDNSSE-NKPEIILIGTGTELSLCEGTAKTLRQEGRRVRVVSLVCWRLFDRQPAEYK 562
Y++ D E +IILI TG+E+ L + L Q+G RVVS+ +FDRQ AEY+
Sbjct: 586 YVLRDWDEEIVARKIILIATGSEVELAMKAVEPLAQQGIAARVVSMPSSDVFDRQDAEYR 645
Query: 563 EKVLPSRVVKRVSVEAGSSVGWREYVGVEGKVIGVEEFGASGAYLDTFKKYGFTIDNVTK 622
E+VLP V+RV++EAG + WR+YVG+EG V+G++ FG S FK +GFT+++V +
Sbjct: 646 ERVLPHG-VRRVAIEAGVTDFWRKYVGLEGGVVGIDTFGESAPAGVLFKHFGFTVEHVIE 704
Query: 623 VARSLLS 629
A+++L+
Sbjct: 705 TAKAVLA 711
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural
genomics, center for structural genomics of infectious
DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Length = 663
Score = 903 bits (2335), Expect = 0.0
Identities = 253/662 (38%), Positives = 370/662 (55%), Gaps = 47/662 (7%)
Query: 1 MLIVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQY 60
L +DA AK+GHPGM +GMA++ VL+ +K+NP N W NRDRFVLS GHG +L Y
Sbjct: 15 FLSIDATLKAKSGHPGMPMGMADIATVLWTKFLKHNPNNPHWINRDRFVLSNGHGSMLLY 74
Query: 61 VCLHLAGFQSVQLEDLKRLCKMGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEA 120
LHL G+ + +ED+K ++ S+TPGHPE T G+E TTGPLGQGVANAVG+AL E
Sbjct: 75 SLLHLTGYD-LSIEDIKNFRQLHSKTPGHPEYGYTPGVETTTGPLGQGVANAVGMALGEK 133
Query: 121 HLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDG 180
L+ R+N PD V+DH TY + DGC MEG+SHEA +LA LNKL +DDN+ +IDG
Sbjct: 134 LLSDRYNTPDLKVIDHHTYVFLGDGCLMEGVSHEACSLAGTLGLNKLVAFWDDNNISIDG 193
Query: 181 PTSLVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVK------ 234
T S++ RF++ GW+ I + HD + ++A+ A ++ +KPT I K
Sbjct: 194 DTKGWFSDNTPERFRAYGWHVIENVDGHD-FVAIEKAINEAHSQQQKPTLICCKTVIGFG 252
Query: 235 ---------------------KMRERVNWVDRDQFHVIPMVYREMQIQTDHGERLEKEWC 273
+ +NW D F + VY+ + G+ LE W
Sbjct: 253 SPEKAGTASVHGSPLSDQERASAAKELNW-DYQAFEIPQDVYKYWD-AREKGQALEANWQ 310
Query: 274 SKVYNYRSKYPHEGAELDLLLNGGLLPGWENALPKWSTSDPLD----ATRGYSEKCLNQL 329
+ + K + E + +L+ L G E+A+ + S + ATR S+ L L
Sbjct: 311 GQRNLF--KDSPKFDEFERVLSKELPVGLESAINDYIASQLSNPVKVATRKASQMVLEVL 368
Query: 330 AKVLPGLIGGSADLASSNKAYLLGYHDFSQPDSPWGRNIRYGVREHAMAGISNGVALHGG 389
K +P + GGSADL SN G + YGVRE MA I NG++L+GG
Sbjct: 369 CKNMPEMFGGSADLTGSNNTNWSGSVWL-NNTQEGANYLSYGVREFGMAAIMNGLSLYGG 427
Query: 390 GLIPFAATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAV 449
+ P+ TFL+FSDY +N+IR+SAL V+++++HDSIGLGEDGPTHQP+E + LR +
Sbjct: 428 -IKPYGGTFLVFSDYSRNAIRMSALMKQPVVHVMSHDSIGLGEDGPTHQPIEHVPSLRLI 486
Query: 450 PRLLAFRPADGNETAGSYRVAIANRDVPSVIALSRQKIAANLEGT--SADEVERGGYIVS 507
P L +RPAD ET +++ A+ ++D PSV+ L+RQ + + T + RGGY+V
Sbjct: 487 PNLSVWRPADTIETMIAWKEAVKSKDTPSVMVLTRQNL-MPVVQTQHQVANIARGGYLVK 545
Query: 508 DNSSENKPEIILIGTGTELSLCEGTAKTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLP 567
DN ++ ++ TG+E+ L A ++G ++ V S+ C +F Q EYK+ V+
Sbjct: 546 DNP---DAKLTIVATGSEVELAVKVANEFEKKGIKLNVASIPCVEVFATQAHEYKKTVIK 602
Query: 568 SRVVKRVSVEAGSSVGWREYVGVE-GKVIGVEEFGASGAYLDTFKKYGFTIDNVTKVARS 626
+ V VE W +Y+ G+V G+ FG S D FK++GFT++N++ +
Sbjct: 603 DD-IPAVFVEMAQPDMWYKYMPKAGGEVKGIYSFGESAPAEDLFKRFGFTVENISNIVAK 661
Query: 627 LL 628
+
Sbjct: 662 YV 663
>3l84_A Transketolase; TKT, structural genomics, center for structur
genomics of infectious diseases, csgid, transferase;
HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A*
3m34_A* 3m7i_A*
Length = 632
Score = 853 bits (2206), Expect = 0.0
Identities = 246/653 (37%), Positives = 355/653 (54%), Gaps = 63/653 (9%)
Query: 1 MLIVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQY 60
L D VQ A +GHPG LG+A++ VL H +K+NP+N W NRDR V S GH L Y
Sbjct: 15 FLSADMVQKANSGHPGAPLGLADILSVLSYH-LKHNPKNPTWLNRDRLVFSGGHASALLY 73
Query: 61 VCLHLAGFQSVQLEDLKRLCKMGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEA 120
LHL+G+ + LEDLK ++ S+TPGHPE + T G+E+ TGPLGQGVANAVG A+A
Sbjct: 74 SFLHLSGY-DLSLEDLKNFRQLHSKTPGHPE-ISTLGVEIATGPLGQGVANAVGFAMAAK 131
Query: 121 HLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDG 180
++DH+ YC+ DG EGIS+EA +LA KL+ LIYD N+ +I+G
Sbjct: 132 KAQNLLGSD---LIDHKIYCLCGDGDLQEGISYEACSLAGLHKLDNFILIYDSNNISIEG 188
Query: 181 PTSLVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVK------ 234
L +E++ RF++ G+ + + HD +AL A ++ KP I K
Sbjct: 189 DVGLAFNENVKMRFEAQGFEVLSING-HD-YEEINKAL-EQAKKSTKPCLIIAKTTIAKG 245
Query: 235 ---------------------KMRERVNWVDRDQFHVIPMVYREMQIQTDHGERLEKEWC 273
K +E+ + FH+ + + G+ E +W
Sbjct: 246 AGELEGSHKSHGAPLGEEVIKKAKEQAGFDPNISFHIPQASKIRFESAVELGDLEEAKWK 305
Query: 274 SKVYNYRSKYPHEGAELDLLLNGGLLPGWENALPKWSTSDPLDATRGYSEKCLNQLAKVL 333
K+ K L+ LLN + A P + D ATR + + LN LAK L
Sbjct: 306 DKLEKSAKK-----ELLERLLNP---DFNKIAYPDFKGKDL--ATRDSNGEILNVLAKNL 355
Query: 334 PGLIGGSADLASSNKAYLLGYHDFSQPDSPWGRNIRYGVREHAMAGISNGVALHGGGLIP 393
G +GGSADL SNK L DF G+NI +G+REHAMA I+N A +G +P
Sbjct: 356 EGFLGGSADLGPSNKTELHSMGDF-----VEGKNIHFGIREHAMAAINNAFARYGI-FLP 409
Query: 394 FAATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAVPRLL 453
F+ATF IFS+Y+K + R++AL +I THDSIG+GEDGPTHQP+EQL+ RA+P L
Sbjct: 410 FSATFFIFSEYLKPAARIAALMKIKHFFIFTHDSIGVGEDGPTHQPIEQLSTFRAMPNFL 469
Query: 454 AFRPADGNETAGSYRVAIANRDVPSVIALSRQKIAANLEGTSADEVERGGYIVSDNSSEN 513
FRPADG E ++++A+ N D+PS LSRQK+ L +V+ G Y++ ++
Sbjct: 470 TFRPADGVENVKAWQIAL-NADIPSAFVLSRQKL-KALNEPVFGDVKNGAYLLKES---K 524
Query: 514 KPEIILIGTGTELSLCEGTAKTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLPSRVVKR 573
+ + L+ +G+E+ LC +A L ++G VVS+ C+ LF++Q Y+E++L V
Sbjct: 525 EAKFTLLASGSEVWLCLESANELEKQGFACNVVSMPCFELFEKQDKAYQERLLKGEV--- 581
Query: 574 VSVEAGSSVGWREYVGVEGKVIGVEEFGASGAYLDTFKKYGFTIDNVTKVARS 626
+ VEA S ++ KV G+E FG SG D F+++GF++ + S
Sbjct: 582 IGVEAAHSNELYKFC---HKVYGIESFGESGKDKDVFERFGFSVSKLVNFILS 631
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis
sugar metaboli transferase; HET: TPP; 1.75A {Homo
sapiens} PDB: 3ooy_A*
Length = 616
Score = 697 bits (1801), Expect = 0.0
Identities = 163/648 (25%), Positives = 258/648 (39%), Gaps = 77/648 (11%)
Query: 1 MLIVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQY 60
+ + A A +GHP AE+ VL+ H M+Y ++ + + DRFVLS GH + Y
Sbjct: 22 ISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKSQDPRNPHNDRFVLSKGHAAPILY 81
Query: 61 VCLHLAGFQSVQLEDLKRLCKMGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEA 120
AGF + +L L K+ S GHP +V TG LGQG+ A G+A
Sbjct: 82 AVWAEAGF--LAEAELLNLRKISSDLDGHPVPK-QAFTDVATGSLGQGLGAACGMAYTGK 138
Query: 121 HLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDG 180
+ +R YC++ DG EG EA A A+ +KL+ L I D N
Sbjct: 139 YFDK---------ASYRVYCLLGDGELSEGSVWEAMAFASIYKLDNLVAILDINRLGQSD 189
Query: 181 PTSLVLSEDISA-RFKSLGWNTIMVENIHDNLSSFKEALMAAANETK-KPTFIRVK---- 234
P L DI R ++ GW+ I+V + H E L A + K +PT I K
Sbjct: 190 PAPLQHQMDIYQKRCEAFGWHAIIV-DGHS-----VEELCKAFGQAKHQPTAIIAKTFKG 243
Query: 235 ----KMRERVNW----VDRDQFHVIPMVYREMQIQTDHGERLEKEWCSKVYNYRSKYPHE 286
+ ++ +W + ++ I + + + SK + P E
Sbjct: 244 RGITGVEDKESWHGKPLPKNMAEQII-------------QEIYSQIQSKK-KILATPPQE 289
Query: 287 GAELDLLLNGGLLPGWENALPKWSTSDPLDATRGYSEKCLNQLAKVLPGLIGGSADLASS 346
A + N +LP + D + ATR + L +L +I D +S
Sbjct: 290 DAPSVDIANI-----RMPSLPSYKVGDKI-ATRKAYGQALAKLGHASDRIIALDGDTKNS 343
Query: 347 NKAYLLGYHDFSQPDSPWGRNIRYGVREHAMAGISNGVALHGGGLIPFAATFLIFSDYMK 406
+ + + + P R I + E M I+ G A +PF +TF F
Sbjct: 344 TFS------EIFKKEHP-DRFIECYIAEQNMVSIAVGCATRNR-TVPFCSTFAAFFTRAF 395
Query: 407 NSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAVPRLLAFRPADGNETAGS 466
+ IR++A+S + + +H + +GEDGP+ +E LA R+VP F P+DG T +
Sbjct: 396 DQIRMAAISESNINLCGSHCGVSIGEDGPSQMALEDLAMFRSVPTSTVFYPSDGVATEKA 455
Query: 467 YRVAIANRDVPSVIALSRQKIAANLEGTSADEVERGGYIVSDNSSENKPEIILIGTGTEL 526
+A AN I SR + A + + D +V ++ +IG G L
Sbjct: 456 VELA-ANTKGICFIRTSRPEN-AIIYNNNEDFQVGQAKVVLK---SKDDQVTVIGAGVTL 510
Query: 527 SLCEGTAKTLRQEGRRVRVVSLVCWRLFDR-----QPAEYKEKVLPSRVVKRVSVEAGSS 581
A+ L++E +RV+ + DR K ++L V+ E G
Sbjct: 511 HEALAAAELLKKEKINIRVLDPFTIKPLDRKLILDSARATKGRIL---TVEDHYYEGGIG 567
Query: 582 VGWREYV----GVEGKVIGVEEFGASGAYLDTFKKYGFTIDNVTKVAR 625
V G+ + V SG + K +G D + + R
Sbjct: 568 EAVSSAVVGEPGITVTHLAVNRVPRSGKPAELLKMFGIDRDAIAQAVR 615
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho;
thiamine diphosphate-dependent enzyme, alpha-beta fold;
HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A*
3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Length = 845
Score = 276 bits (707), Expect = 1e-82
Identities = 96/663 (14%), Positives = 184/663 (27%), Gaps = 120/663 (18%)
Query: 2 LIVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQYV 61
D V++ GH G G+ + + R + F++ GHG
Sbjct: 72 FTRDDVKHRLVGHWGTTPGLNFLLAHINRLIADHQ-------QNTVFIMGPGHGGPAGTS 124
Query: 62 CLHLAGFQSVQ-------LEDLKRLCKMGSRTPGHPE--NVVTEGIEVTTGPLGQGVANA 112
++ G + L++ + S G P T G G LG +++A
Sbjct: 125 QSYVDGTYTEYYPNITKDEAGLQKFFRQFSYPGGIPSHFAPETPGSIHEGGELGYALSHA 184
Query: 113 VGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGI---SHEAAALAAHWKLNKLTL 169
G + CI+ DG A G ++ L +
Sbjct: 185 YGAVMNN--------------PSLFVPCIIGDGEAETGPLATGWQSNKLVNPRTDGIVLP 230
Query: 170 IYDDNHNTIDGPTSLVL--SEDISARFKSLGWNTIMVENIHDN------LSSFKEALMAA 221
I N I PT L E++ F+ +G++ DN F E
Sbjct: 231 ILHLNGYKIANPTILARISDEELHDFFRGMGYHPYEFVAGFDNEDHMSIHRRFAELFETI 290
Query: 222 ANETKK---------------PTFI-RVKKMRERVNWVD----RDQFHVIPMVYREMQIQ 261
+E P I R K ++D + + +
Sbjct: 291 FDEICDIKAAAQTDDMTRPFYPMLIFRTPKGWTCPKFIDGKKTEGSWRAHQVPLASARDT 350
Query: 262 TDHGERLEKEWCS----KVYNYRSKYPHEGAEL----------------DLLLNGGLLPG 301
+H E L+ S +++N + ++ LP
Sbjct: 351 EEHFEVLKGWMESYKPEELFNADGSIKDDVTAFMPKGELRIGANPNANGGVIREDLKLPE 410
Query: 302 WENA-----LPKWSTSDPLDATRGYSEKCLNQLAKVLPGLIGGSADLASSNK---AYLLG 353
+ ++A R C + + D +SN+ Y +
Sbjct: 411 LDQYEVTGVKEYGHGWGQVEAPRALGAYCRDIIKNNPDSFRIFGPDETASNRLNATYEVT 470
Query: 354 YHDFSQPDSP--------WGRNIRYGVREHAMAGISNGVALHGG-GLIPFAATFLIFSDY 404
+ + + EH G L G G+ +F+ D
Sbjct: 471 DKQWDNGYLSGLVDEHMAVTGQVTEQLSEHQCEGFLEAYLLTGRHGIWSSYESFVHVIDS 530
Query: 405 M--------KNSIRLSALSH--AGVIYILTHDSIGLGEDGPTHQP---VEQLAGLRAVPR 451
M + ++R + V +++ +G +HQ L
Sbjct: 531 MLNQHAKWLEATVREIPWRKPISSVNLLVSSHVWRQDHNGFSHQDPGVTSLLINKTFNND 590
Query: 452 LLA--FRPADGNETAGSYRVAIANRDVPSVIALSRQKIAANLEGTSADE-VERGGYIV-- 506
+ + D N + + + I +Q + A +E G
Sbjct: 591 HVTNIYFATDANMLLAISEKCFKSTNKINAIFAGKQPAPTWVTLDEARAELEAGAAEWKW 650
Query: 507 -SDNSSENKPEIILIGTGTELSL-CEGTAKTLRQEGRRVRVVSLVCWRLFDRQPAEYKEK 564
S+ + ++ +++L G + + L + G + +VV+ L Q E ++
Sbjct: 651 ASNAENNDEVQVVLASAGDVPTQELMAASDALNKMGIKFKVVN--VVDLLKLQSRENNDE 708
Query: 565 VLP 567
L
Sbjct: 709 ALT 711
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.1 bits (127), Expect = 3e-07
Identities = 87/529 (16%), Positives = 154/529 (29%), Gaps = 182/529 (34%)
Query: 48 FVLSAGHGCLLQYVCL--HLAGFQSVQLED--LKRLCKMGSRTPGHPENVVTEGIEVTTG 103
LS HG L ++V L + F + QL++ K L PE TEG
Sbjct: 9 LTLS--HGSL-EHVLLVPTASFFIASQLQEQFNKIL----------PE--PTEGFAADDE 53
Query: 104 PLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWK 163
P A L +F + + +S
Sbjct: 54 PT------------TPAELVGKF-------LGY--------------VSSLVEPSKVGQF 80
Query: 164 LNKLTLIYDDNHNTIDGPTSLVLS-EDISARFKSL-GWNTIMVENIHDNLSSFKEALMAA 221
L L + N L DI A L N + + + ++ A + A
Sbjct: 81 DQVLNLCLTEFENCY-------LEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMA 133
Query: 222 ANETKKPT----FIRVKKMRERV-----------NWVD--RDQFHVIPMVYREM--QIQT 262
K + F V + ++ ++ + RD + Y + +
Sbjct: 134 KRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQ----TYHVLVGDLIK 189
Query: 263 DHGERLEKEWCSKVYNYRSKYPHEGAELDLLLNGGLLPGWENALPKWSTSDPLDATRGYS 322
E L E + + G L++L W L S + D Y
Sbjct: 190 FSAETLS-ELIRTTLDAEKVFTQ-G--LNIL-------EW---LENPSNTPDKD----Y- 230
Query: 323 EKCLNQLAKV---LPGLIGGSADLASSNKAYLLGYHDFSQPDSPWGRNIRYGVREHAMAG 379
L + P LIG + L Y ++ G +
Sbjct: 231 ------LLSIPISCP-LIG----VIQ-----LAHYVVTAK---------LLGFTPGELRS 265
Query: 380 ISNGVALHGGGLIPFAATFLIFSD----YMKNSIRLSALSHAGVIYILTHDSIGLGEDGP 435
G H GL+ A + +D + + + A++ +L IG
Sbjct: 266 YLKGATGHSQGLV--TAVAIAETDSWESFFVSVRK--AIT------VLFF--IG------ 307
Query: 436 THQPVEQLAGLRAVPRLLAFRPA------DGNETAGSYRVAIANRDVPSVIALSRQKIAA 489
+ A P + P+ + NE S + S+ L+++++
Sbjct: 308 -------VRCYEAYPN-TSLPPSILEDSLENNEGVPSPML--------SISNLTQEQVQD 351
Query: 490 NLEGTSAD-EVERGGYIVSDNSSENKPEIILIGTGTELSLCEGTAKTLR 537
+ T++ + I N ++N +++ +G SL G TLR
Sbjct: 352 YVNKTNSHLPAGKQVEISLVNGAKN---LVV--SGPPQSLY-GLNLTLR 394
Score = 52.0 bits (124), Expect = 7e-07
Identities = 82/550 (14%), Positives = 153/550 (27%), Gaps = 221/550 (40%)
Query: 179 DGPTSLVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRE 238
D PT+ ++ +F LG+ + +VE + F + L E + ++
Sbjct: 52 DEPTTPA---ELVGKF--LGYVSSLVEP--SKVGQFDQVLNLCLTEFEN-CYLE------ 97
Query: 239 RVNWVDRDQFHVIPMVYREMQIQTDHGERLEKEWCSKVYNYRSKYPHEGAELDLLLNGGL 298
D H + ++ + D KE K Y ++ ++
Sbjct: 98 -----GND-IH---ALAAKLLQENDTTLVKTKELI-KNY-ITAR---------IMAK--- 134
Query: 299 LPGWENALPKWSTSDPLDATR-------------GYSEKCLNQLAKV-------LPGLIG 338
K S S A G ++ +L + + LI
Sbjct: 135 -----RPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIK 189
Query: 339 GSADL--------ASSNKAYLLGYHDF--------SQPDSPWGRNI-------------R 369
SA+ + K + G + + PD + +I
Sbjct: 190 FSAETLSELIRTTLDAEKVFTQGL-NILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAH 248
Query: 370 Y-------GVREHAMAGISNGVALHGGGLIPFAATFLIFSD----YMKNSIR-LSALSHA 417
Y G + G H GL+ A + +D + + + ++ L
Sbjct: 249 YVVTAKLLGFTPGELRSYLKGATGHSQGLV--TAVAIAETDSWESFFVSVRKAITVLFFI 306
Query: 418 GV--------IYI---LTHDSIGLGEDGPT----------------------HQPVEQ-- 442
GV + + DS+ E P+ H P +
Sbjct: 307 GVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQV 366
Query: 443 ------------LAG----LRAVPRLL--AFRPA--DGNETAGSYR-VAIANR------- 474
++G L + L A P+ D + S R + +NR
Sbjct: 367 EISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASP 426
Query: 475 -------DVPSVIA--LSRQKIA----------------ANLEGTSADEVERGGYIVS-- 507
+I L + ++ ++L S ER IV
Sbjct: 427 FHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISER---IVDCI 483
Query: 508 -------DNSSENKPE-IILIGTGTELSLCEGTAKTLRQEGRRVRVV---SLVCWRLFDR 556
+ +++ K I+ G G L T + +G VRV+ +L D
Sbjct: 484 IRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNK--DGTGVRVIVAGTL------DI 535
Query: 557 QPAE---YKE 563
P + +K+
Sbjct: 536 NPDDDYGFKQ 545
Score = 48.9 bits (116), Expect = 6e-06
Identities = 40/208 (19%), Positives = 69/208 (33%), Gaps = 72/208 (34%)
Query: 357 FSQPDSPWGRNIRYGVREHAMAGISNGVA----LHGGGLIPFAATFLIFS--DYMKNSIR 410
F+QP A+ + A L GLIP ATF S +Y
Sbjct: 1731 FTQP---------------ALTLME--KAAFEDLKSKGLIPADATFAGHSLGEY------ 1767
Query: 411 LSAL-SHAGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAVPRLLAFRPADGNETAGSYRV 469
+AL S A V+ SI E V ++ +R G +
Sbjct: 1768 -AALASLADVM------SI---ES--------------LV-EVVFYR---GMTMQVAVPR 1799
Query: 470 AIANRDVPSVIALSRQKIAANLEGTSADEV-----ERGGYIVS---DNSSENKPEIILIG 521
R +IA++ ++AA+ + V +R G++V N + +
Sbjct: 1800 DELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVE---NQQYVAA 1856
Query: 522 TGTELSLCEGTAKTLRQEG-RRVRVVSL 548
G +L + L +++ ++ L
Sbjct: 1857 -GDLRAL-DTVTNVLNFIKLQKIDIIEL 1882
Score = 47.4 bits (112), Expect = 2e-05
Identities = 60/353 (16%), Positives = 99/353 (28%), Gaps = 109/353 (30%)
Query: 71 VQLEDLKRLCKMGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEAHLAARFNKPD 130
+QL K+ TPG + ++ TG QG+ AV A+AE F
Sbjct: 244 IQLAHYVVTAKLLGFTPGE----LRSYLKGATG-HSQGLVTAV--AIAETDSWESFFVSV 296
Query: 131 AVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGPTSLV----- 185
+ + G +EA + +++ D N P+ ++
Sbjct: 297 RKAITVLFFI----GVR----CYEAYPNTSLP----PSILEDSLENNEGVPSPMLSISNL 344
Query: 186 ----LSEDISARFKSLGWNT---IMVENIHDN--LSSFKEALMAAANETKKPTFIRVKKM 236
+ + ++ L I + N N +S ++L +K +
Sbjct: 345 TQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRK---AKAPS- 400
Query: 237 RERVNWVDRDQFHVIPMVYREMQIQTDHGERLEKEWCSKVYN-----YRSKYPHEGAEL- 290
DQ IP ER K S + + S ++L
Sbjct: 401 -------GLDQ-SRIP-----------FSER--KLKFSNRFLPVASPFHSHLLVPASDLI 439
Query: 291 --DLLLNGGLLPGWENALPKWSTSDPLDATRGYSEKCLNQLAKVL--------------- 333
DL+ N + +P + T D D R S ++ +
Sbjct: 440 NKDLVKNNVSFNAKDIQIPVYDTFDGSD-LRVLSGSISERIVDCIIRLPVKWETTTQFKA 498
Query: 334 -------PGLIGGSADLASSNKAYLLGYHDFSQPDSPWGRNIRYGVREHAMAG 379
PG G L NK G GVR +AG
Sbjct: 499 THILDFGPGGASGLGVLTHRNKD---------------GT----GVRV-IVAG 531
Score = 45.4 bits (107), Expect = 7e-05
Identities = 33/201 (16%), Positives = 51/201 (25%), Gaps = 88/201 (43%)
Query: 8 QNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGH--GCLLQYVCL-H 64
Q P + L + + +K AGH G +Y L
Sbjct: 1730 QFT---QPALTL----MEKAAFE-DLK------SKGLIPADATFAGHSLG---EYAALAS 1772
Query: 65 LAGFQSVQLEDLKRLCK---------------------MGSRTPG------HPENV--VT 95
LA S +E L + M + PG E + V
Sbjct: 1773 LADVMS--IESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVV 1830
Query: 96 EGIEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEA 155
E + TG L + + N +N + V + +
Sbjct: 1831 ERVGKRTGWLVE-IVN--------------YNVENQQYV----------------AAGDL 1859
Query: 156 AALAA------HWKLNKLTLI 170
AL KL K+ +I
Sbjct: 1860 RALDTVTNVLNFIKLQKIDII 1880
Score = 44.7 bits (105), Expect = 1e-04
Identities = 45/286 (15%), Positives = 92/286 (32%), Gaps = 92/286 (32%)
Query: 26 YVLYRHAMKYNPRNHKWFNRDRFVLSAGHG-CLLQYVCLHLAG----FQSVQLEDLKRLC 80
YV+ + + P R + GH L+ V + F + + L
Sbjct: 249 YVVTAKLLGFTPGEL----RSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLF 304
Query: 81 KMGSR----TPGH--PENVVTEGIEVTTGPLGQGVAN---AV-GLALAE---------AH 121
+G R P P +++ + +E +GV + ++ L + +H
Sbjct: 305 FIGVRCYEAYPNTSLPPSILEDSLEN-----NEGVPSPMLSISNLTQEQVQDYVNKTNSH 359
Query: 122 LA-------ARFNKPDAVVVDHRTYCIMSDG--CAMEGISHEAAALAAHWKLN------- 165
L + N +VV + G ++ G++ A L+
Sbjct: 360 LPAGKQVEISLVNGAKNLVV---S------GPPQSLYGLNLTLRKAKAPSGLDQSRIPFS 410
Query: 166 --KLTLI---------YDDNHNTIDGPTSLVLSEDISARFKSLGWNT----IMVENIHD- 209
KL + H+ + P S ++++D+ ++ +N I V + D
Sbjct: 411 ERKLKFSNRFLPVASPF---HSHLLVPASDLINKDLVK--NNVSFNAKDIQIPVYDTFDG 465
Query: 210 -NLSSFKEALMAAANETKKPTFIRVKKMRERVNWVDRDQF---HVI 251
+L ++ + I +R V W QF H++
Sbjct: 466 SDLRVLSGSISERIVDC-----I----IRLPVKWETTTQFKATHIL 502
Score = 38.1 bits (88), Expect = 0.009
Identities = 83/461 (18%), Positives = 141/461 (30%), Gaps = 141/461 (30%)
Query: 106 GQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWK-- 163
GQG + E L + +V D I + + +
Sbjct: 162 GQGNTDDY---FEE--LRDLYQTYHVLVGD----LIKFSAETLSELIRTTLDAEKVFTQG 212
Query: 164 LNKLTLIYD-----DNHNTIDGPTSLVLSEDIS-ARF----KSLGWNTIMVENIHDNLSS 213
LN L + + D + P S L I A + K LG+ + + +
Sbjct: 213 LNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATG 272
Query: 214 FKEALMAA---ANETKKPTFIR-VKKMRERVNWVD-RDQFHVIPMVYRE---MQIQTDHG 265
+ L+ A A +F V+K + ++ R P ++ ++
Sbjct: 273 HSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCY-EAYPNTSLPPSILEDSLENN 331
Query: 266 E----------RLEKEWCSKVYNYRSKYPHEGAELDL-LLNG-------GL---LPGWEN 304
E L +E N + + G ++++ L+NG G L G
Sbjct: 332 EGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNL 391
Query: 305 ALPKWSTSDPLDATR-GYSEKCLNQLAKVLPGLIGGSADLASSNKAYLLGYHDFSQPDSP 363
L K LD +R +SE+ L + LP + ++ +H S
Sbjct: 392 TLRKAKAPSGLDQSRIPFSERKLKFSNRFLP--V--ASP-----------FH------SH 430
Query: 364 WGRNIRYGVREHAMAGISNGVALHGGGLIPFAATFLIFSDYMKNSIRLSALSHAGV-IYI 422
L+P A+ LI D +KN++ +A + +Y
Sbjct: 431 L--------------------------LVP--ASDLINKDLVKNNVSFNA-KDIQIPVY- 460
Query: 423 LTHDSIGLGED--------GP------THQPV--EQLAGLRAVPRLLAFRPADGNETAGS 466
T D G D PV E +A +L F P G +G
Sbjct: 461 DTFD----GSDLRVLSGSISERIVDCIIRLPVKWETTTQFKA-THILDFGP--GG-ASGL 512
Query: 467 YRVAIANRD---VPSVIALSRQKIAANLEGTSADEVERGGY 504
+ N+D V VI +A L+ D+ G+
Sbjct: 513 GVLTHRNKDGTGV-RVI------VAGTLDINPDDDY---GF 543
Score = 36.6 bits (84), Expect = 0.032
Identities = 45/331 (13%), Positives = 87/331 (26%), Gaps = 140/331 (42%)
Query: 368 IRYGVREHAMAGISNGVALHGGGLIP----FAATFL--IFSDYMKNSIRLSALSHAGVIY 421
+ +G EH + L+P F A+ L F+
Sbjct: 11 LSHGSLEHVL-------------LVPTASFFIASQLQEQFNK------------------ 39
Query: 422 ILTHDSIGLGEDGPTHQPVEQLAGLRAVPRLLAF--RPADGNETAGSY------------ 467
IL + G D P E + + L + + ++ G +
Sbjct: 40 ILPEPTEGFAADDEPTTPAELVG------KFLGYVSSLVEPSK-VGQFDQVLNLCLTEFE 92
Query: 468 RVAIANRDVPSVIALSRQKIAANLEGTSADEVERGGYIVS-------------------- 507
+ D+ ++ AA L + + + ++
Sbjct: 93 NCYLEGNDIHAL--------AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA 144
Query: 508 --DNSSENKPEIILI--GTGT------EL------------SLCEGTAKTLRQEGRRVRV 545
E +++ I G G EL L + +A+TL + R
Sbjct: 145 LFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLD 204
Query: 546 VSLVCWRLFD-----RQPAEYKEKVLPSRVVKRVSVEAGSSVGWREY---VGVEGKVIGV 597
V + + P+ P + +Y + + +IGV
Sbjct: 205 AEKVFTQGLNILEWLENPSN-----TPDK----------------DYLLSIPISCPLIGV 243
Query: 598 EEFGASGAYLDTFKKYGFTIDNVTKVARSLL 628
+ Y+ T K GFT + +
Sbjct: 244 IQLAH---YVVTAKLLGFTPGELRSYLKGAT 271
Score = 36.2 bits (83), Expect = 0.040
Identities = 33/232 (14%), Positives = 75/232 (32%), Gaps = 67/232 (28%)
Query: 422 ILTHDSIGLGEDGPT--HQPVEQLAGLRAVPRLLAFRPADGNETAGSYRVAIANRDVPSV 479
L+H S+ PT QL + + P A D P+
Sbjct: 10 TLSHGSLEHVLLVPTASFFIASQL---QE--QFNKILPEPTEGFAAD--------DEPT- 55
Query: 480 IALSRQKIAANLEGTSADEVERGGYIVSDNSSENKPEIILIG---------TGTEL---- 526
+ ++ G + VE + +++ + G ++
Sbjct: 56 ---TPAELVGKFLGYVSSLVE-------PSKVGQFDQVLNLCLTEFENCYLEGNDIHALA 105
Query: 527 -SLCEGTAKTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLPSRVVKRVSVEAGSSVGWR 585
L + TL + ++ + + R+ ++P + K S + + +V G++
Sbjct: 106 AKLLQENDTTLVKTKELIK--NYITARIMAKRPFD---KKSNSALFR--AVGEGNA---- 154
Query: 586 EYVGVEGKVIGVEEFGASG---AYLD----TFKKYGFTIDNVTKVARSLLSE 630
+++ + FG G Y + ++ Y + ++ K + LSE
Sbjct: 155 -------QLVAI--FGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSE 197
Score = 35.0 bits (80), Expect = 0.097
Identities = 44/283 (15%), Positives = 78/283 (27%), Gaps = 100/283 (35%)
Query: 427 SIGLGEDGPTHQPVEQLAGLRAVPRLLAFRPADGNETAGSYRVAIAN--RDVPSVIAL-- 482
G+G D A + V + AD N +Y +I + + P + +
Sbjct: 1628 EQGMGMDLYKTSKA---A--QDV-----WNRAD-NHFKDTYGFSILDIVINNPVNLTIHF 1676
Query: 483 ---SRQKIAANLEGTSADEVERGGYI---VSDNSSENKPEIILIGTGTELSLCEGTAKT- 535
++I N + + G + +E+ LS T T
Sbjct: 1677 GGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA---TQFTQ 1733
Query: 536 -------------LRQEGRRVR--------------------------VVSLVCWR-LFD 555
L+ +G +V +V +R +
Sbjct: 1734 PALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTM 1793
Query: 556 RQPAEYKEK---------VLPSRVVKRVSVEA--------GSSVGW-----------REY 587
+ E + P RV S EA G GW ++Y
Sbjct: 1794 QVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQY 1853
Query: 588 VGVEGKVIGVEEFGASGAYLDTFKKYGFTIDNVTKVARSLLSE 630
V G + ++ L+ K ID + ++ +SL E
Sbjct: 1854 V-AAGDLRALDTV---TNVLNFIKLQK--IDII-ELQKSLSLE 1889
Score = 32.3 bits (73), Expect = 0.66
Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 22/88 (25%)
Query: 6 AVQNA-KAGHPGMA-LGMAEVGYVLYRHAMKYNP-RNHKWFNRD--RFV---LSAGHGCL 57
+Q A G + GM + NP R F+++ ++V + G L
Sbjct: 1792 TMQVAVPRDELGRSNYGMIAI-----------NPGRVAASFSQEALQYVVERVGKRTGWL 1840
Query: 58 LQYVCLHLAGFQSV---QLEDLKRLCKM 82
++ V ++ Q V L L + +
Sbjct: 1841 VEIVNYNVENQQYVAAGDLRALDTVTNV 1868
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.9 bits (126), Expect = 3e-07
Identities = 45/355 (12%), Positives = 102/355 (28%), Gaps = 89/355 (25%)
Query: 3 IVDAVQNAKAGHPGMAL-GMAEVG-YVLYRHAMKYNPRNHKWFNRDRFVLSAGHGC---- 56
+ A+ + + + G+ G + + + + F L+ +
Sbjct: 140 LRQALLELRP-AKNVLIDGVLGSGKTWVALDVCL-SYKVQCKMDFKIFWLNLKNCNSPET 197
Query: 57 ---LLQYVCLHLAGFQSVQ----------LEDLKRLCKMGSRTPGHPE------NV---- 93
+LQ + + + + + ++ + ++ + NV
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK 257
Query: 94 VTEG------IEVTTGPLGQGVANAVGLA----LAEAHLAARFNKPDAVVVDHRTYCIMS 143
I +TT + V + + A ++ H + + ++ +
Sbjct: 258 AWNAFNLSCKILLTTR--FKQVTDFLSAATTTHISLDHHSMTLTPDEV-----KSLLLKY 310
Query: 144 DGCAMEGISHEA-----------AAL----AAHWKLNKLTLIYDDNHNTIDGPTSL-VLS 187
C + + E A A W N + D I+ +SL VL
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD-NWKHVNCDKLTTIIE--SSLNVLE 367
Query: 188 -EDISARFKSLGWNTIMVENIH---DNLSSF-----KEALMAAANETKKPTFIRVKKMRE 238
+ F L + + H LS K +M N+ K + E
Sbjct: 368 PAEYRKMFDRLS---VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK------YSLVE 418
Query: 239 RVNWVDRDQFHVIPMVYREMQIQTDHGERLEKEWCSKVYNYRSKYPHEGAELDLL 293
+ IP +Y E++++ ++ L + YN + + L
Sbjct: 419 K--QPKESTIS-IPSIYLELKVKLENEYALHRSIVDH-YNIPKTFDSDDLIPPYL 469
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit,
somatic form; pyruvate_dehydrogenase_complex, human,
multienzyme_complex_component; HET: TPP; 1.90A {Homo
sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A
3exh_A* 3exg_A 3exf_A*
Length = 365
Score = 43.0 bits (102), Expect = 2e-04
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 10/59 (16%)
Query: 106 GQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKL 164
G V G+ALA ++N D V + + DG A +G EA +AA WKL
Sbjct: 143 GAQVPLGAGIALA-----CKYNGKDEVCL-----TLYGDGAANQGQIFEAYNMAALWKL 191
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate,
glycolysis, MAG metal-binding, oxidoreductase, thiamine
pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP:
c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A*
2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Length = 886
Score = 42.1 bits (99), Expect = 6e-04
Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 9/99 (9%)
Query: 114 GLALAEAHLAARFNK--PDAVVVDH---RTYCIMSDGCAMEGISHEAAALAAHWKLNKLT 168
GL A A+F K + D Y + DG E S A +A KL+ L
Sbjct: 195 GLGPIGAIYQAKFLKYLEHRGLKDTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLV 254
Query: 169 LIYDDNHNTIDGPT---SLVLSEDISARFKSLGWNTIMV 204
+ + N +DGP +++E + F+ GWN I V
Sbjct: 255 FVINCNLQRLDGPVTGNGKIINE-LEGIFEGAGWNVIKV 292
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid,
transferase; HET: TDP; 2.40A {Escherichia coli}
Length = 621
Score = 38.6 bits (91), Expect = 0.005
Identities = 44/177 (24%), Positives = 71/177 (40%), Gaps = 34/177 (19%)
Query: 374 EHA--MAGISNGVALHGGGLIPFAA---TFL------IFSDYMKNSIRLSALSHAGVIYI 422
+HA A G+A+ GG P A TFL + D A+ V++
Sbjct: 371 QHAVTFAA---GLAI--GGYKPIVAIYSTFLQRAYDQVLHDV--------AIQKLPVLFA 417
Query: 423 LTHDSIGL-GEDGPTHQPVEQLAGLRAVPRLLAFRPADGNETAGSYRVAIANRDVPSVIA 481
+ D G+ G DG THQ L+ LR +P ++ P+D NE D PS +
Sbjct: 418 I--DRAGIVGADGQTHQGAFDLSYLRCIPEMVIMTPSDENECRQMLYTGYHYNDGPSAVR 475
Query: 482 LSRQKIAANLEGTSADEVERG-GYIVSDNSSENKPEIILIGTGTELSLCEGTAKTLR 537
R A +E T +++ G G + ++ ++ GT + A++L
Sbjct: 476 YPRGN-AVGVELTPLEKLPIGKGIVKRRGE-----KLAILNFGTLMPEAAKVAESLN 526
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS,
transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Length = 629
Score = 38.3 bits (90), Expect = 0.007
Identities = 26/120 (21%), Positives = 45/120 (37%), Gaps = 21/120 (17%)
Query: 429 GL-GEDGPTHQPVEQLAGLRAVPRLLAFRPADGNE------TAGSYRVAIANRDVPSVIA 481
G+ G DG TH V L+ LR++P + P D E A ++ D P I
Sbjct: 425 GIVGADGATHNGVFDLSFLRSIPGVRIGLPKDAAELRGMLKYAQTH-------DGPFAIR 477
Query: 482 LSRQKIAANLEGTSADEVERG-GYIVSDNSSENKPEIILIGTGTELSLCEGTAKTLRQEG 540
R A + + +++ G + +++++ G L A+ L G
Sbjct: 478 YPRGN-TAQVPAGTWPDLKWGEWERLKGGD-----DVVILAGGKALDYALKAAEDLPGVG 531
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2)
tetramer, structural genomics; HET: TDP; 1.90A {Thermus
thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A*
1umb_A*
Length = 367
Score = 37.6 bits (88), Expect = 0.010
Identities = 14/63 (22%), Positives = 20/63 (31%), Gaps = 10/63 (15%)
Query: 102 TGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAH 161
P+ V A G A++ + + V V C DG EG + AA
Sbjct: 143 ASPIASHVPPAAGAAIS-----MKLLRTGQVAV-----CTFGDGATSEGDWYAGINFAAV 192
Query: 162 WKL 164
Sbjct: 193 QGA 195
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase,
multienzyme complex, oxidoreductase; HET: TDP; 2.0A
{Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB:
3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Length = 368
Score = 37.2 bits (87), Expect = 0.013
Identities = 13/63 (20%), Positives = 20/63 (31%), Gaps = 10/63 (15%)
Query: 102 TGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAH 161
+G A G+AL + AV + DG +G +E A
Sbjct: 141 QIIIGAQYIQAAGVALG-----LKMRGKKAVAI-----TYTGDGGTSQGDFYEGINFAGA 190
Query: 162 WKL 164
+K
Sbjct: 191 FKA 193
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase,
multi-enzyme complex, acylation, oxidative
decarboxylation, maple syrup urine disease; HET: TDP;
1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A*
2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A*
1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A*
1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Length = 400
Score = 35.4 bits (82), Expect = 0.059
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 10/63 (15%)
Query: 102 TGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAH 161
+ PL + AVG A A A+ + VV+ Y +G A EG +H AA
Sbjct: 161 SSPLATQIPQAVGAAYA-----AKRANANRVVI---CYF--GEGAASEGDAHAGFNFAAT 210
Query: 162 WKL 164
+
Sbjct: 211 LEC 213
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP
cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas
putida} SCOP: c.36.1.11 PDB: 2bp7_A
Length = 407
Score = 34.7 bits (80), Expect = 0.093
Identities = 13/63 (20%), Positives = 20/63 (31%), Gaps = 10/63 (15%)
Query: 102 TGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAH 161
+G L AVG A+A + + + DG E H A A
Sbjct: 180 SGNLATQFVQAVGWAMA-----SAIKGDTKIAS---AWI--GDGATAESDFHTALTFAHV 229
Query: 162 WKL 164
++
Sbjct: 230 YRA 232
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural
genomics, PSI-2, protein structu initiative; 1.90A
{Thermoplasma acidophilum}
Length = 118
Score = 29.3 bits (66), Expect = 1.3
Identities = 21/120 (17%), Positives = 47/120 (39%), Gaps = 17/120 (14%)
Query: 514 KPEIILIGTGTELSLCEGTAKTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLPSRVVKR 573
+ +I + G++ + L++EG ++ L + F P E+ + VL S
Sbjct: 13 EADITFVTWGSQKGPILDVIEDLKEEGISANLLYLKMFSPF---PTEFVKNVL-SSANLV 68
Query: 574 VSVEAGSSVGWREYVGVEGKVIGVEEFGASGAYLDTFKKYG---FTIDNVTKVARSLLSE 630
+ VE+ + + + + + + KY T D + K A+ +L++
Sbjct: 69 IDVESNYTAQAAQMIKLYTGIDIKNKIL----------KYNGRHMTEDEILKSAKEILNK 118
>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics,
protein structure INI PSI, center for eukaryotic
structural genomics, CESG; 2.59A {Homo sapiens} SCOP:
c.103.1.1 PDB: 2q4q_A
Length = 122
Score = 29.1 bits (65), Expect = 1.6
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 512 ENKPEIILIGTGTE--LSLCEGTAKTLRQEGRRVRV 545
E + ++IG G L + T + L++ G VRV
Sbjct: 59 EKGVQTLVIGRGMSEALKVPSSTVEYLKKHGIDVRV 94
>1bdf_A RNA polymerase alpha subunit; nucleotidyltransferase, assemble;
2.50A {Escherichia coli} SCOP: d.74.3.1 d.181.1.1
Length = 235
Score = 29.7 bits (68), Expect = 2.1
Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 8/56 (14%)
Query: 469 VAIANRDVPSVIA-LSRQKIAANLEGTSADEVERG-GYIVSDNSSENKPEIILIGT 522
V I VI L+ + + ++ V+RG GY+ + ++ + IG
Sbjct: 121 VEIVKPQH--VICHLTDENASISMRIK----VQRGRGYVPASTRIHSEEDERPIGR 170
>3lcc_A Putative methyl chloride transferase; halide methyltransferase;
HET: SAH; 1.80A {Arabidopsis thaliana}
Length = 235
Score = 30.0 bits (67), Expect = 2.2
Identities = 14/84 (16%), Positives = 29/84 (34%), Gaps = 3/84 (3%)
Query: 132 VVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGPTSLVLSEDIS 191
++ D+ +C + L +L +TL+Y + + GP V
Sbjct: 135 LIFDYVFFCAIEPEMRPAWAKSMYELLKPDGEL--ITLMYPI-TDHVGGPPYKVDVSTFE 191
Query: 192 ARFKSLGWNTIMVENIHDNLSSFK 215
+G+ + VE + + K
Sbjct: 192 EVLVPIGFKAVSVEENPHAIPTRK 215
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 30.6 bits (69), Expect = 2.3
Identities = 18/123 (14%), Positives = 37/123 (30%), Gaps = 26/123 (21%)
Query: 44 NRDRFVLSAGHGCLLQYVCLHLAGFQSVQLEDLKRLCKMGSRTPGHPENVVTEGIEV--- 100
R+ F+ + G G + + KMG G V
Sbjct: 1173 TRNGFMEAQGAGIQI--------------IMQADLALKMGVPIYG---IVAMAATATDKI 1215
Query: 101 -TTGPL-GQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAAL 158
+ P G+G+ E H + ++ P+ + + + + + + +E AL
Sbjct: 1216 GRSVPAPGKGILTTA----REHHSSVKYASPNLNMKYRKRQLVTREAQIKDWVENELEAL 1271
Query: 159 AAH 161
Sbjct: 1272 KLE 1274
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 30.3 bits (68), Expect = 2.3
Identities = 7/71 (9%), Positives = 15/71 (21%), Gaps = 9/71 (12%)
Query: 231 IRVKKMRERVNWVDRDQFHVIPMVYREMQIQTDHGERLEKEWCSKVYNYRSKYPHEGAEL 290
+ + K+R + F + + + L
Sbjct: 220 LEILKLRGTSHMKGEYPFTITDHGINIFPLGAMRLTQRSSNVRVSSGVV---------RL 270
Query: 291 DLLLNGGLLPG 301
D + GG
Sbjct: 271 DEMCGGGFFKD 281
>3f9u_A Putative exported cytochrome C biogenesis-related; exported
cytochrome C biogenesis-related protein, bacteroide
fragilis; 2.20A {Bacteroides fragilis nctc 9343}
Length = 172
Score = 29.3 bits (65), Expect = 2.4
Identities = 14/93 (15%), Positives = 28/93 (30%), Gaps = 11/93 (11%)
Query: 205 ENIHDNLSSFKEALMAAANETKKPTFI--------RVKKMRERVNWVDRDQFHVIPMVYR 256
+H + + A + KP + +KM V W D +I Y
Sbjct: 27 NEVHAKFDDYDLGM-EYARQHNKPVMLDFTGYGCVNCRKMELAV-WTDPKVSSIINNDYV 84
Query: 257 EMQIQTDHGERLEKEWCSKVYNYRSKYPHEGAE 289
+ + D+ L + + N + +
Sbjct: 85 LITLYVDNKTPLTEPV-KIMENGTERTLRTVGD 116
>3goa_A 3-ketoacyl-COA thiolase; metabolism, fatty acid, phospholipid,
IDP01071, acyltransferase, cytoplasm, fatty acid
metabolism; 1.70A {Salmonella typhimurium}
Length = 387
Score = 30.1 bits (69), Expect = 2.4
Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 5/26 (19%)
Query: 440 VEQLAGLRAVPRLLAFRPADGNETAG 465
VE L+ LR AF P G TAG
Sbjct: 216 VEALSTLRP-----AFDPVSGTVTAG 236
>3cpk_A Uncharacterized protein Q7W7N7_borpa; BPP2477, BER31, NESG,
structural genomics, PSI-2, protein structure
initiative; 2.50A {Bordetella parapertussis 12822} PDB:
2k2e_A
Length = 150
Score = 28.6 bits (63), Expect = 3.5
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 512 ENKPEIILIGTGTELS-LCEGTAKTLRQEGRRVRVVS 547
N PE++L+GTG L + L G V +
Sbjct: 86 ANAPEVLLVGTGRRQHLLGPEQVRPLLAMGVGVEAMD 122
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein;
periplasmic
N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin
protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Length = 302
Score = 28.9 bits (65), Expect = 4.5
Identities = 6/34 (17%), Positives = 11/34 (32%), Gaps = 1/34 (2%)
Query: 591 EGKVIGVEEFGASGAYLDTF-KKYGFTIDNVTKV 623
G +G + L T + G + V +
Sbjct: 105 VGLTVGYPGIPVNEPILKTMVEAAGGDYEQVHLM 138
>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1,
inhibitor, lysine specific HI demethylase; HET: K0I;
1.86A {Homo sapiens} PDB: 2xue_A*
Length = 510
Score = 29.0 bits (64), Expect = 4.7
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Query: 33 MKYNPRNHKWFNRDRFVLSAGHGCLLQYVCLHLAGFQSVQLEDLKRLCKM-GSRTPGHPE 91
++ P+ + F+ G +L +V + G +VQL K+ GSRTPGH E
Sbjct: 199 KRWKPQLQELLKLPAFMRVTSTGNMLSHVGHTILGMNTVQL-----YMKVPGSRTPGHQE 253
Query: 92 NVVTEGIEVTTGP 104
N + + GP
Sbjct: 254 NNNFCSVNINIGP 266
>1gpw_B Amidotransferase HISH; lyase/transferase, complex
(lyase/transferase), histidine biosynthesis,
glutaminase, glutamine amidotransferase; 2.4A
{Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A
2wjz_B
Length = 201
Score = 28.2 bits (64), Expect = 6.7
Identities = 5/23 (21%), Positives = 11/23 (47%), Gaps = 5/23 (21%)
Query: 193 RFKSL-----GWNTIMVENIHDN 210
+ +S GWN ++ ++ N
Sbjct: 112 KLRSRRLPHMGWNEVIFKDTFPN 134
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding
protein; 2.60A {Streptococcus suis}
Length = 282
Score = 28.1 bits (63), Expect = 8.6
Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 2/70 (2%)
Query: 558 PAEYKEKVLPSRVVKRVSVEAGSSVGWREYVGVEGKVIGVEEFGASGAYLDTFKKYGFTI 617
A + E +K++ + G E V EGK + + G DTF
Sbjct: 214 KAIFTESTTNPERMKKLQEAVKAKGGQVEVVTGEGKELFSDSLAPEGEEGDTF--IDMYK 271
Query: 618 DNVTKVARSL 627
NV + + L
Sbjct: 272 HNVKLMVKYL 281
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, at cassette, DNA damage, DNA
excision; HET: ADP; 3.20A {Geobacillus
stearothermophilus} PDB: 3uwx_A
Length = 972
Score = 28.2 bits (64), Expect = 9.0
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 13/35 (37%)
Query: 409 IRL-----SALSHAGVIYILTHDSIGLGEDGPTHQ 438
IRL S L+ GV+Y+L SIGL HQ
Sbjct: 513 IRLATQIGSRLT--GVLYVLDEPSIGL------HQ 539
>3lu0_A DNA-directed RNA polymerase subunit alpha; E. coli RNA polymerase,
nucleotidyltransferase, transcription, transferase;
11.20A {Escherichia coli} PDB: 3iyd_A
Length = 329
Score = 28.2 bits (64), Expect = 9.6
Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 8/56 (14%)
Query: 469 VAIANRDVPSVIA-LSRQKIAANLEGTSADEVERG-GYIVSDNSSENKPEIILIGT 522
V I VI L+ + + ++ V+RG GY+ + ++ + IG
Sbjct: 121 VEIVKPQH--VICHLTDENASISMRIK----VQRGRGYVPASTRIHSEEDERPIGR 170
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.405
Gapped
Lambda K H
0.267 0.0478 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,916,989
Number of extensions: 630718
Number of successful extensions: 1598
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1460
Number of HSP's successfully gapped: 65
Length of query: 630
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 531
Effective length of database: 3,937,614
Effective search space: 2090873034
Effective search space used: 2090873034
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.5 bits)