RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 006816
(630 letters)
>d1itza1 c.36.1.10 (A:10-347) Transketolase (TK), PP module {Maize
(Zea mays) [TaxId: 4577]}
Length = 338
Score = 241 bits (616), Expect = 5e-75
Identities = 160/323 (49%), Positives = 201/323 (62%), Gaps = 28/323 (8%)
Query: 1 MLIVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQY 60
L +DAV+ A +GHPG+ +G A +G+VLY M+YNP+N WFNRDRFVLSAGHGC+LQY
Sbjct: 16 FLAIDAVEKANSGHPGLPMGCAPMGHVLYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQY 75
Query: 61 VCLHLAGFQSVQLEDLKRLCKMGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEA 120
LHLAG+ SV+ EDLK+ + GSRTPGHPEN T G+EVTTGPLGQG+ANAVGLALAE
Sbjct: 76 ALLHLAGYDSVKEEDLKQFRQWGSRTPGHPENFETPGVEVTTGPLGQGIANAVGLALAEK 135
Query: 121 HLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDG 180
HLAARFNKPD+ +VDH TY I+ DGC MEGI++EA +LA HW L KL YDDNH +IDG
Sbjct: 136 HLAARFNKPDSEIVDHYTYVILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDNHISIDG 195
Query: 181 PTSLVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVK------ 234
T + +ED+S RF++LGW+TI V+N + + A+ A T KPT I+V
Sbjct: 196 DTEIAFTEDVSTRFEALGWHTIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIKVTTTIGFG 255
Query: 235 ---------------------KMRERVNWVDRDQFHVIPMVYREMQIQTDHGERLEKEWC 273
R+ + W D F V V T G LE +W
Sbjct: 256 SPNKANSYSVHGSALGAKEVEATRQNLGWPY-DTFFVPEDVKSHWSRHTPEGAALEADWN 314
Query: 274 SKVYNYRSKYPHEGAELDLLLNG 296
+K Y KY + A L ++ G
Sbjct: 315 AKFAEYEKKYADDAATLKSIITG 337
>d1gpua1 c.36.1.10 (A:3-337) Transketolase (TK), PP module {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 335
Score = 240 bits (612), Expect = 1e-74
Identities = 134/323 (41%), Positives = 182/323 (56%), Gaps = 30/323 (9%)
Query: 1 MLIVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQY 60
+L VD V A +GHPG LGMA +VL+ M+ NP N W NRDRFVLS GH L Y
Sbjct: 15 ILAVDTVSKANSGHPGAPLGMAPAAHVLWSQ-MRMNPTNPDWINRDRFVLSNGHAVALLY 73
Query: 61 VCLHLAGFQSVQLEDLKRLCKMGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEA 120
LHL G+ + +EDLK+ ++GSRTPGHPE G+EVTTGPLGQG++NAVG+A+A+A
Sbjct: 74 SMLHLTGYD-LSIEDLKQFRQLGSRTPGHPEFE-LPGVEVTTGPLGQGISNAVGMAMAQA 131
Query: 121 HLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDG 180
+LAA +NKP + D+ TY + DGC EGIS EA++LA H KL L IYDDN TIDG
Sbjct: 132 NLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYDDNKITIDG 191
Query: 181 PTSLVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIR-------- 232
TS+ ED++ R+++ GW + VEN +++L+ +A+ A KPT I+
Sbjct: 192 ATSISFDEDVAKRYEAYGWEVLYVENGNEDLAGIAKAIAQAKLSKDKPTLIKMTTTIGYG 251
Query: 233 ------------------VKKMRERVNWVDRDQFHVIPMVYREM-QIQTDHGERLEKEWC 273
VK+++ + + F V VY + G +W
Sbjct: 252 SLHAGSHSVHGAPLKADDVKQLKSKFGFNPDKSFVVPQEVYDHYQKTILKPGVEANNKWN 311
Query: 274 SKVYNYRSKYPHEGAELDLLLNG 296
Y+ K+P GAEL L+G
Sbjct: 312 KLFSEYQKKFPELGAELARRLSG 334
>d2r8oa2 c.36.1.10 (A:2-332) Transketolase (TK), PP module
{Escherichia coli [TaxId: 562]}
Length = 331
Score = 236 bits (603), Expect = 3e-73
Identities = 130/323 (40%), Positives = 180/323 (55%), Gaps = 31/323 (9%)
Query: 1 MLIVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQY 60
L +DAVQ AK+GHPG +GMA++ VL+R +K+NP+N W +RDRFVLS GHG +L Y
Sbjct: 12 ALSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLKHNPQNPSWADRDRFVLSNGHGSMLIY 71
Query: 61 VCLHLAGFQSVQLEDLKRLCKMGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEA 120
LHL G+ + +E+LK ++ S+TPGHPE T G+E TTGPLGQG+ANAVG+A+AE
Sbjct: 72 SLLHLTGYD-LPMEELKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEK 130
Query: 121 HLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDG 180
LAA+FN+P +VDH TY M DGC MEGISHE +LA KL KL YDDN +IDG
Sbjct: 131 TLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGISIDG 190
Query: 181 PTSLVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIR-------- 232
++D + RF++ GW+ + + + +S K A+ A T KP+ +
Sbjct: 191 HVEGWFTDDTAMRFEAYGWHV-IRDIDGHDAASIKRAVEEARAVTDKPSLLMCKTIIGFG 249
Query: 233 -------------------VKKMRERVNWVDRDQFHVIPMVYREMQIQTDHGERLEKEWC 273
+ RE++ W F + +Y + + + G+ E W
Sbjct: 250 SPNKAGTHDSHGAPLGDAEIALTREQLGW-KYAPFEIPSEIYAQWDAK-EAGQAKESAWN 307
Query: 274 SKVYNYRSKYPHEGAELDLLLNG 296
K Y YP E AE + G
Sbjct: 308 EKFAAYAKAYPQEAAEFTRRMKG 330
>d1r9ja2 c.36.1.10 (A:1-336) Transketolase (TK), PP module
{Leishmania mexicana mexicana [TaxId: 44270]}
Length = 336
Score = 213 bits (543), Expect = 2e-64
Identities = 131/324 (40%), Positives = 180/324 (55%), Gaps = 27/324 (8%)
Query: 1 MLIVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQY 60
L D VQ K+GHPG +GMA + VL+ MKYN ++ W +RDRFV+S GHGC LQY
Sbjct: 13 CLAADIVQGGKSGHPGTPMGMAPMSAVLWTEVMKYNSQDPDWVDRDRFVMSNGHGCALQY 72
Query: 61 VCLHLAGFQSVQLEDLKRLCKMGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEA 120
LH+AG+ + ++DLK + GSRTPGHPE VT G+EVTTGPLGQG+ANAVGLA+AEA
Sbjct: 73 ALLHMAGYN-LTMDDLKGFRQDGSRTPGHPERFVTPGVEVTTGPLGQGIANAVGLAIAEA 131
Query: 121 HLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDG 180
HLAA FN+P +VDH TY DGC MEG+ EA +LA H L KL +IYD N+ +IDG
Sbjct: 132 HLAATFNRPGYNIVDHYTYVYCGDGCLMEGVCQEALSLAGHLALEKLIVIYDSNYISIDG 191
Query: 181 PTSLVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKP------TFIR-- 232
TSL +E ++ ++G++ I V+N + ++AL A KP T I
Sbjct: 192 STSLSFTEQCHQKYVAMGFHVIEVKNGDTDYEGLRKALAEAKATKGKPKMIVQTTTIGFG 251
Query: 233 ------------------VKKMRERVNWVDRDQFHVIPMVYREMQIQTDHGERLEKEWCS 274
+ ++ + + ++ V V ++ D +K W
Sbjct: 252 SSKQGTEKVHGAPLGEEDIANIKAKFGRDPQKKYDVDDDVRAVFRMHIDKCSAEQKAWEE 311
Query: 275 KVYNYRSKYPHEGAELDLLLNGGL 298
+ Y + +P EGA + G L
Sbjct: 312 LLAKYTAAFPAEGAAFVAQMRGEL 335
>d1itza2 c.36.1.6 (A:348-539) Transketolase (TK), Pyr module {Maize
(Zea mays) [TaxId: 4577]}
Length = 192
Score = 172 bits (437), Expect = 5e-51
Identities = 117/190 (61%), Positives = 148/190 (77%), Gaps = 2/190 (1%)
Query: 299 LP-GWENALPKWSTSDPLDATRGYSEKCLNQLAKVLPGLIGGSADLASSNKAYLLGYHDF 357
LP GW +ALPK++ P DATR S++CLN LA V+PGLIGGSADLASSN L + DF
Sbjct: 1 LPTGWVDALPKYTPESPGDATRNLSQQCLNALANVVPGLIGGSADLASSNMTLLKMFGDF 60
Query: 358 SQPDSPWGRNIRYGVREHAMAGISNGVALHGGGLIPFAATFLIFSDYMKNSIRLSALSHA 417
+ D+ RN+R+GVREH M I NG+ALH G +P+ ATF +F+DYM+ ++R+SALS A
Sbjct: 61 QK-DTAEERNVRFGVREHGMGAICNGIALHSPGFVPYCATFFVFTDYMRGAMRISALSEA 119
Query: 418 GVIYILTHDSIGLGEDGPTHQPVEQLAGLRAVPRLLAFRPADGNETAGSYRVAIANRDVP 477
GVIY++THDSIGLGEDGPTHQP+E L RA+P +L RPADGNETAG+Y+VA+ NR P
Sbjct: 120 GVIYVMTHDSIGLGEDGPTHQPIEHLVSFRAMPNILMLRPADGNETAGAYKVAVLNRKRP 179
Query: 478 SVIALSRQKI 487
S++ALSRQK+
Sbjct: 180 SILALSRQKL 189
>d1gpua2 c.36.1.6 (A:338-534) Transketolase (TK), Pyr module
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 197
Score = 160 bits (405), Expect = 3e-46
Identities = 94/194 (48%), Positives = 121/194 (62%), Gaps = 5/194 (2%)
Query: 299 LP-GWENALPKWSTSDPLDATRGYSEKCLNQLAKVLPGLIGGSADLASSNKAYLLGYHDF 357
LP WE+ LP ++ D ATR SE L + LP LIGGSADL SN DF
Sbjct: 1 LPANWESKLPTYTAKDSAVATRKLSETVLEDVYNQLPELIGGSADLTPSNLTRWKEALDF 60
Query: 358 SQPDS----PWGRNIRYGVREHAMAGISNGVALHGGGLIPFAATFLIFSDYMKNSIRLSA 413
P S GR IRYG+REHAM I NG++ G P+ TFL F Y ++RLSA
Sbjct: 61 QPPSSGSGNYSGRYIRYGIREHAMGAIMNGISAFGANYKPYGGTFLNFVSYAAGAVRLSA 120
Query: 414 LSHAGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAVPRLLAFRPADGNETAGSYRVAIAN 473
LS VI++ THDSIG+GEDGPTHQP+E LA R++P + +RPADGNE + +Y+ ++ +
Sbjct: 121 LSGHPVIWVATHDSIGVGEDGPTHQPIETLAHFRSLPNIQVWRPADGNEVSAAYKNSLES 180
Query: 474 RDVPSVIALSRQKI 487
+ PS+IALSRQ +
Sbjct: 181 KHTPSIIALSRQNL 194
>d1r9ja1 c.36.1.6 (A:337-526) Transketolase (TK), Pyr module
{Leishmania mexicana mexicana [TaxId: 44270]}
Length = 190
Score = 157 bits (399), Expect = 2e-45
Identities = 94/188 (50%), Positives = 118/188 (62%), Gaps = 5/188 (2%)
Query: 301 GWENALPKWSTSDPLDATRGYSEKCLNQLAKVLPGLIGGSADLASSNKAYLLGYHDFS-Q 359
GWE LP T+ ATR SE CL L +P L+GGSADL SN +
Sbjct: 2 GWEAKLP---TNSSAIATRKASENCLAVLFPAIPALMGGSADLTPSNLTRPASANLVDFS 58
Query: 360 PDSPWGRNIRYGVREHAMAGISNGVALHGGGLIPFAATFLIFSDYMKNSIRLSALSHAGV 419
S GR IR+GVREHAM I NG+ H G+IPF TFL F Y ++RL+A+SH V
Sbjct: 59 SSSKEGRYIRFGVREHAMCAILNGLDAH-DGIIPFGGTFLNFIGYALGAVRLAAISHHRV 117
Query: 420 IYILTHDSIGLGEDGPTHQPVEQLAGLRAVPRLLAFRPADGNETAGSYRVAIANRDVPSV 479
IY+ THDSIG+GEDGPTHQPVE +A LRA+P L RP+D ET+G++ VA+++ P+V
Sbjct: 118 IYVATHDSIGVGEDGPTHQPVELVAALRAMPNLQVIRPSDQTETSGAWAVALSSIHTPTV 177
Query: 480 IALSRQKI 487
+ LSRQ
Sbjct: 178 LCLSRQNT 185
>d2ieaa2 c.36.1.10 (A:56-470) Pyruvate dehydrogenase E1 component,
PP module {Escherichia coli [TaxId: 562]}
Length = 415
Score = 148 bits (374), Expect = 1e-39
Identities = 56/383 (14%), Positives = 91/383 (23%), Gaps = 57/383 (14%)
Query: 2 LIVDAVQNAK------AGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHG 55
+ V A GH A + V + H + + V GH
Sbjct: 33 NAIMTVLRASKKDLELGGHMASFQSSATIYDVCFNHFFRAR----NEQDGGDLVYFQGHI 88
Query: 56 CLLQYVCLHLAGFQSVQLEDLKRLCKMGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGL 115
Y L G + E L + E P +G
Sbjct: 89 SPGVYARAFLEGRLTQ--EQLDNFRQEVHGNGLSSYPHPKLMPEFWQFPTVSMGLGPIGA 146
Query: 116 ALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNH 175
L ++ Y + DG E S A +A KL+ L + + N
Sbjct: 147 IYQAKFLKYLEHRGLKDTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNL 206
Query: 176 NTIDGPTSLVLS--EDISARFKSLGWNTIMVENIHD----NLSSFKEALMAAANETKKPT 229
+DGP + ++ F+ GWN I V L+ NET
Sbjct: 207 QRLDGPVTGNGKIINELEGIFEGAGWNVIKVMWGSRWDELLRKDTSGKLIQLMNETVDGD 266
Query: 230 FIR-----------------------VKKMRERVNWVDRDQFHVIPMVYREMQIQTDH-- 264
+ V + W H +Y + +
Sbjct: 267 YQTFKSKDGAYVREHFFGKYPETAALVADWTDEQIWALNRGGHDPKKIYAAFKKAQETKG 326
Query: 265 -------------GERLEKEWCSKVYNYRSKYPHEGAELDLLLNGGLLPGWENALPKWST 311
G E + + + + N + LP +
Sbjct: 327 KATVILAHTIKGYGMGDAAEGKNIAHQVKKMNMDGVRHIRDRFNVPVSDADIEKLPYITF 386
Query: 312 SDPLDATRGYSEKCLNQLAKVLP 334
+ + Y +L LP
Sbjct: 387 PEGSEEHT-YLHAQRQKLHGYLP 408
>d2r8oa1 c.36.1.6 (A:333-527) Transketolase (TK), Pyr module
{Escherichia coli [TaxId: 562]}
Length = 195
Score = 123 bits (310), Expect = 3e-33
Identities = 77/199 (38%), Positives = 117/199 (58%), Gaps = 9/199 (4%)
Query: 299 LP-GWENALPKW----STSDPLDATRGYSEKCLNQLAKVLPGLIGGSADLASSNKAYLLG 353
+P ++ ++ + A+R S+ + +LP +GGSADLA SN G
Sbjct: 1 MPSDFDAKAKEFIAKLQANPAKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSG 60
Query: 354 YHDFSQPDSPWGRNIRYGVREHAMAGISNGVALHGGGLIPFAATFLIFSDYMKNSIRLSA 413
++ G I YGVRE M I+NG++LHGG +P+ +TFL+F +Y +N++R++A
Sbjct: 61 SKAINED--AAGNYIHYGVREFGMTAIANGISLHGGF-LPYTSTFLMFVEYARNAVRMAA 117
Query: 414 LSHAGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAVPRLLAFRPADGNETAGSYRVAIAN 473
L + + THDSIGLGEDGPTHQPVEQ+A LR P + +RP D E+A +++ +
Sbjct: 118 LMKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTPNMSTWRPCDQVESAVAWKYGVER 177
Query: 474 RDVPSVIALSRQKIAANLE 492
+D P+ + LSRQ + A E
Sbjct: 178 QDGPTALILSRQNL-AQQE 195
>d1itza3 c.48.1.1 (A:540-675) Transketolase (TK), C-domain {Maize
(Zea mays) [TaxId: 4577]}
Length = 136
Score = 120 bits (301), Expect = 1e-32
Identities = 70/134 (52%), Positives = 100/134 (74%)
Query: 493 GTSADEVERGGYIVSDNSSENKPEIILIGTGTELSLCEGTAKTLRQEGRRVRVVSLVCWR 552
GTS + VE+GGY +SDNS+ NKP++I++GTG+EL + A LR+EG+ VRVVS V W
Sbjct: 2 GTSIEGVEKGGYTISDNSTGNKPDLIVMGTGSELEIAAKAADELRKEGKTVRVVSFVSWE 61
Query: 553 LFDRQPAEYKEKVLPSRVVKRVSVEAGSSVGWREYVGVEGKVIGVEEFGASGAYLDTFKK 612
LFD Q EYKE VLP+ V R+S+EAGS++GW++YVG +GK IG+++FGAS +K+
Sbjct: 62 LFDEQSDEYKESVLPAAVTARISIEAGSTLGWQKYVGAQGKAIGIDKFGASAPAGTIYKE 121
Query: 613 YGFTIDNVTKVARS 626
YG T++++ A+S
Sbjct: 122 YGITVESIIAAAKS 135
>d1gpua3 c.48.1.1 (A:535-680) Transketolase (TK), C-domain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 146
Score = 114 bits (286), Expect = 2e-30
Identities = 53/138 (38%), Positives = 82/138 (59%), Gaps = 7/138 (5%)
Query: 492 EGTSADEVERGGYIVSDNSSENKPEIILIGTGTELSLCEGTAKTLRQEGRRVRVVSLVCW 551
EG+S + +GGY++ D + P+IIL+ TG+E+SL AKTL + + RVVSL +
Sbjct: 1 EGSSIESASKGGYVLQDVA---NPDIILVATGSEVSLSVEAAKTLAAKNIKARVVSLPDF 57
Query: 552 RLFDRQPAEYKEKVLPSRVVKRVSVEAGSSVGWREYVGVEGKVIGVEEFGASGAYLDTFK 611
FD+QP EY+ VLP V +SVE ++ W +Y + G++ FGASG + FK
Sbjct: 58 FTFDKQPLEYRLSVLP-DNVPIMSVEVLATTCWGKYA---HQSFGIDRFGASGKAPEVFK 113
Query: 612 KYGFTIDNVTKVARSLLS 629
+GFT + V + A+ ++
Sbjct: 114 FFGFTPEGVAERAQKTIA 131
>d2r8oa3 c.48.1.1 (A:528-663) Transketolase (TK), C-domain
{Escherichia coli [TaxId: 562]}
Length = 136
Score = 108 bits (271), Expect = 2e-28
Identities = 55/132 (41%), Positives = 79/132 (59%), Gaps = 2/132 (1%)
Query: 497 DEVERGGYIVSDNSSENKPEIILIGTGTELSLCEGTAKTLRQEGRRVRVVSLVCWRLFDR 556
+ RGGY++ D +PE+I I TG+E+ L + L EG + RVVS+ FD+
Sbjct: 7 ANIARGGYVLKD--CAGQPELIFIATGSEVELAVAAYEKLTAEGVKARVVSMPSTDAFDK 64
Query: 557 QPAEYKEKVLPSRVVKRVSVEAGSSVGWREYVGVEGKVIGVEEFGASGAYLDTFKKYGFT 616
Q A Y+E VLP V RV+VEAG + W +YVG+ G ++G+ FG S F+++GFT
Sbjct: 65 QDAAYRESVLPKAVTARVAVEAGIADYWYKYVGLNGAIVGMTTFGESAPAELLFEEFGFT 124
Query: 617 IDNVTKVARSLL 628
+DNV A+ LL
Sbjct: 125 VDNVVAKAKELL 136
>d1r9ja3 c.48.1.1 (A:527-669) Transketolase (TK), C-domain
{Leishmania mexicana mexicana [TaxId: 44270]}
Length = 143
Score = 108 bits (271), Expect = 2e-28
Identities = 52/135 (38%), Positives = 74/135 (54%), Gaps = 8/135 (5%)
Query: 494 TSADEVERGGYIVSDNSSENKPEIILIGTGTELSLCEGTAKTLRQEGRRVRVVSLVCWRL 553
+S + V G Y V D +++++ +G+E+SL AK L E R VRVVS+ C L
Sbjct: 1 SSIEGVRHGAYSVVDVP---DLQLVIVASGSEVSLAVDAAKALSGELR-VRVVSMPCQEL 56
Query: 554 FDRQPAEYKEKVLPSRVVKRVSVEAGSSVGWREYVGVEGKVIGVEEFGASGAYLDTFKKY 613
FD QP Y++ VLP+ V VSVEA S GW +Y +G+ FGAS +KK+
Sbjct: 57 FDAQPDTYRQAVLPAGV-PVVSVEAYVSFGWEKYSH---AHVGMSGFGASAPAGVLYKKF 112
Query: 614 GFTIDNVTKVARSLL 628
G T++ V + R L
Sbjct: 113 GITVEEVVRTGRELA 127
>d2ieaa3 c.48.1.1 (A:701-886) Pyruvate dehydrogenase E1 component,
C-domain {Escherichia coli [TaxId: 562]}
Length = 186
Score = 79.8 bits (196), Expect = 7e-18
Identities = 21/155 (13%), Positives = 49/155 (31%), Gaps = 20/155 (12%)
Query: 495 SADEVERGGYIVSDNSSENKPEIILIGTGTELSLC-EGTAKTLRQEGRRVRVVSLVCWRL 553
+ + + +G Y + K ++ L+G+G+ L E + G V S+ +
Sbjct: 5 AEEGIRKGIYKLETIEGS-KGKVQLLGSGSILRHVREAAEILAKDYGVGSDVYSVTSFTE 63
Query: 554 FDRQPAEYKEKVLPSRVVKR--------------VSVEAGSSVG----WREYVGVEGKVI 595
R + + + + V+ + + +V+
Sbjct: 64 LARDGQDCERWNMLHPLETPRVPYIAQVMNDAPAVASTDYMKLFAEQVRTYVPADDYRVL 123
Query: 596 GVEEFGASGAYLDTFKKYGFTIDNVTKVARSLLSE 630
G + FG S + + + V A L++
Sbjct: 124 GTDGFGRSDSRENLRHHFEVDASYVVVAALGELAK 158
>d1zpda3 c.36.1.9 (A:363-566) Pyruvate decarboxylase {Zymomonas
mobilis [TaxId: 542]}
Length = 204
Score = 36.8 bits (84), Expect = 0.004
Identities = 20/156 (12%), Positives = 42/156 (26%), Gaps = 19/156 (12%)
Query: 105 LGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKL 164
+ +G ++ A A ++ + + +
Sbjct: 45 EYEMQWGHIGWSVPAAFGYAVGAPERRNILMVGDGSFQLTAQEVAQMVRLKLPVIIFLIN 104
Query: 165 NK----LTLIYDDNHNTIDGPTSLVLSE--DISARFKSLGWNTIMVENIHDNLSSFKEAL 218
N +I+D +N I L E + + + S + + + EA+
Sbjct: 105 NYGYTIEVMIHDGPYNNIKNWDYAGLMEVFNGNGGYDSGAAKGLKAKTGGE----LAEAI 160
Query: 219 MAAANETKKPTFIRVKKMRERVNWVDRDQFHVIPMV 254
A T PT I + R+ +V
Sbjct: 161 KVALANTDGPTLIECF--------IGRED-CTEELV 187
>d1q6za3 c.36.1.9 (A:342-524) Benzoylformate decarboxylase
{Pseudomonas putida [TaxId: 303]}
Length = 183
Score = 33.9 bits (76), Expect = 0.035
Identities = 22/110 (20%), Positives = 32/110 (29%), Gaps = 16/110 (14%)
Query: 136 HRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLI-----------YDDNHNTIDGPTSL 184
I G S A AA + + + +I + + P
Sbjct: 77 PERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIMNNGTYGALRWFAGVLEAENVPGLD 136
Query: 185 VLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVK 234
V D A K G + +N+ S +EAL K P I V
Sbjct: 137 VPGIDFRALAKGYGVQALKADNLEQLKGSLQEAL-----SAKGPVLIEVS 181
>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase,
regulatory (C-terminal) domain {Escherichia coli [TaxId:
562]}
Length = 84
Score = 28.9 bits (65), Expect = 0.34
Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 20/89 (22%)
Query: 464 AGSYRVAIANRDVPSVIA-----LSRQKIAANLEGTSADEVERGGYIVSD-NSSENKPEI 517
G R+ + + P V+ + Q + N+ + GY+V D + E+ E
Sbjct: 9 HGGRRLMHIHENRPGVLTALNKIFAEQGV--NIAAQYLQTSAQMGYVVIDIEADEDVAEK 66
Query: 518 ILIGTGTELSLCEGTAKTLRQEGRRVRVV 546
L + GT R R++
Sbjct: 67 AL----QAMKAIPGT--------IRARLL 83
>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum)
[TaxId: 4682]}
Length = 425
Score = 30.8 bits (69), Expect = 0.47
Identities = 16/113 (14%), Positives = 32/113 (28%), Gaps = 14/113 (12%)
Query: 66 AGFQSVQLED-LKRLCKMGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEAHLAA 124
+ F S +LE +K L ++ N + + G + + + ++L+ A
Sbjct: 98 SNFISFELEKTIKELHEVVG-------NAAAKDRYIVFGVGVTQLIHGLVISLSPNMTAT 150
Query: 125 RFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNT 177
VV Y + + W N + N
Sbjct: 151 PDAPESKVVAHAPFYPVFREQTKYFDKKGY------VWAGNAANYVNVSNPEQ 197
>d2ihta3 c.36.1.9 (A:375-572) Carboxyethylarginine synthase
{Streptomyces clavuligerus [TaxId: 1901]}
Length = 198
Score = 29.1 bits (64), Expect = 1.2
Identities = 22/146 (15%), Positives = 43/146 (29%), Gaps = 17/146 (11%)
Query: 105 LGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKL 164
L ++ G + A A + S+ +E I+ +
Sbjct: 56 LTSAGCSSFGYGIPAAIGAQMARPDQPTFLIAGDGGFHSNSSDLETIARLNLPIVTVVVN 115
Query: 165 NK----LTLIYDDNHNTIDGPTSLVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMA 220
N + L + H+ P D A ++ G + N + L++ ++
Sbjct: 116 NDTNGLIELYQNIGHHRSHDPAVKFGGVDFVALAEANGVDATRATNREELLAALRKGA-- 173
Query: 221 AANETKKPTFIRVKKMRERVNWVDRD 246
E +P I V V+ D
Sbjct: 174 ---ELGRPFLIEVP--------VNYD 188
>d2q4qa1 c.103.1.1 (A:2-122) Hypothetical protein PTD015 (C11orf67)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 121
Score = 27.5 bits (61), Expect = 2.5
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 512 ENKPEIILIGTG--TELSLCEGTAKTLRQEGRRV 543
E + ++IG G L + T + L++ G V
Sbjct: 58 EKGVQTLVIGRGMSEALKVPSSTVEYLKKHGIDV 91
>d1e0ca1 c.46.1.2 (A:1-135) Sulfurtransferase {Azotobacter
vinelandii [TaxId: 354]}
Length = 135
Score = 27.4 bits (59), Expect = 2.7
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 122 LAARFNKPDAVVVDHRTYCIMSDGCAMEGI 151
L AR + P+ ++VD + ++G
Sbjct: 16 LQARLSAPELILVDLTSAARYAEGHIPGAR 45
>d2hqha1 b.34.10.1 (A:26-97) Dynactin 1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 72
Score = 25.8 bits (57), Expect = 3.4
Identities = 17/49 (34%), Positives = 19/49 (38%), Gaps = 4/49 (8%)
Query: 567 PSRVVKRVSVEAGSSVGWREYVGV----EGKVIGVEEFGASGAYLDTFK 611
P RV RV V G YVG GK +GV A G T +
Sbjct: 1 PLRVGSRVEVIGKGHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQ 49
>d1m6ia3 d.87.1.1 (A:478-608) Apoptosis-inducing factor (AIF) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 131
Score = 26.5 bits (58), Expect = 5.4
Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 5/77 (6%)
Query: 488 AANLEGTSADEVERGGYIVSDNSSENKPEIILIGTGTELSLCEGTAKTLRQEG-----RR 542
A + + + G I S++ +E++ I I T +G R
Sbjct: 34 ATAQDNPKSATEQSGTGIRSESETESEASEITIPPSTPAVPQAPVQGEDYGKGVIFYLRD 93
Query: 543 VRVVSLVCWRLFDRQPA 559
VV +V W +F+R P
Sbjct: 94 KVVVGIVLWNIFNRMPI 110
>d1d2ea1 b.43.3.1 (A:251-348) Elongation factor Tu (EF-Tu), domain 2
{Cow (Bos taurus), mitochondrial [TaxId: 9913]}
Length = 98
Score = 26.0 bits (57), Expect = 5.9
Identities = 5/26 (19%), Positives = 11/26 (42%)
Query: 485 QKIAANLEGTSADEVERGGYIVSDNS 510
+ A + G +++ RG + S
Sbjct: 70 DNLGALVRGLKREDLRRGLVMAKPGS 95
>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase,
regulatory (C-terminal) domain {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 78
Score = 25.2 bits (55), Expect = 6.7
Identities = 12/90 (13%), Positives = 23/90 (25%), Gaps = 18/90 (20%)
Query: 464 AGSYRVAIANRDVPSVIA-----LSRQKIAANLEGTSADEVERGGYIVSDNSSENKPEII 518
A + I D P + L + N++ E G +
Sbjct: 1 AQGINLIIHYVDRPGALGKIGTLLGTAGV--NIQAAQLSEDAEGPGATILLRLDQDVPDD 58
Query: 519 LIGTGTELSLCEGTAKTLRQEGRRVRVVSL 548
+ T ++ ++ VV L
Sbjct: 59 VR---TAIAAAVDA--------YKLEVVDL 77
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.405
Gapped
Lambda K H
0.267 0.0485 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,347,106
Number of extensions: 111838
Number of successful extensions: 358
Number of sequences better than 10.0: 1
Number of HSP's gapped: 335
Number of HSP's successfully gapped: 29
Length of query: 630
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 539
Effective length of database: 1,158,166
Effective search space: 624251474
Effective search space used: 624251474
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.9 bits)