Query 006817
Match_columns 630
No_of_seqs 174 out of 320
Neff 4.8
Searched_HMMs 46136
Date Thu Mar 28 14:55:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006817.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006817hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05761 5_nucleotid: 5' nucle 100.0 1E-144 2E-149 1176.3 26.1 440 143-615 1-448 (448)
2 KOG2470 Similar to IMP-GMP spe 100.0 3E-130 6E-135 1010.8 19.9 470 97-614 11-495 (510)
3 TIGR02244 HAD-IG-Ncltidse HAD 100.0 1E-105 2E-110 846.2 27.8 337 143-482 1-342 (343)
4 KOG2469 IMP-GMP specific 5'-nu 100.0 2E-103 4E-108 827.8 23.3 412 135-586 8-424 (424)
5 TIGR02253 CTE7 HAD superfamily 99.1 9E-10 1.9E-14 107.8 12.8 106 322-464 91-196 (221)
6 TIGR01422 phosphonatase phosph 98.8 6E-08 1.3E-12 97.9 15.2 102 324-463 98-201 (253)
7 PRK13288 pyrophosphatase PpaX; 98.8 1.3E-07 2.7E-12 92.9 14.3 102 324-463 81-182 (214)
8 PLN03243 haloacid dehalogenase 98.7 1.7E-07 3.7E-12 96.6 14.0 101 325-463 109-209 (260)
9 PRK13226 phosphoglycolate phos 98.7 3.5E-07 7.6E-12 91.5 14.3 103 323-463 93-195 (229)
10 PRK13478 phosphonoacetaldehyde 98.7 6.5E-07 1.4E-11 91.5 16.0 103 324-464 100-204 (267)
11 TIGR03351 PhnX-like phosphonat 98.7 5.6E-07 1.2E-11 88.4 14.8 102 325-464 87-192 (220)
12 PRK10826 2-deoxyglucose-6-phos 98.6 1.4E-06 3E-11 86.2 16.0 104 324-465 91-194 (222)
13 PLN02940 riboflavin kinase 98.6 9.8E-07 2.1E-11 95.7 15.6 102 325-463 93-194 (382)
14 TIGR02252 DREG-2 REG-2-like, H 98.6 8.9E-07 1.9E-11 86.0 13.5 99 325-461 105-203 (203)
15 PRK13222 phosphoglycolate phos 98.5 3.4E-06 7.4E-11 82.6 16.8 102 324-463 92-193 (226)
16 PRK10725 fructose-1-P/6-phosph 98.5 2.5E-06 5.4E-11 81.6 13.7 93 331-462 93-185 (188)
17 PRK13225 phosphoglycolate phos 98.5 2.7E-06 5.8E-11 88.4 14.9 101 324-465 141-241 (273)
18 TIGR02247 HAD-1A3-hyp Epoxide 98.4 2.6E-06 5.7E-11 83.4 12.4 100 325-464 94-197 (211)
19 PLN02575 haloacid dehalogenase 98.4 5.8E-06 1.3E-10 90.1 15.6 101 326-464 217-317 (381)
20 PRK10563 6-phosphogluconate ph 98.4 7.2E-06 1.6E-10 80.8 14.8 96 323-463 86-186 (221)
21 PRK13223 phosphoglycolate phos 98.3 1.3E-05 2.9E-10 82.8 16.0 102 324-463 100-201 (272)
22 PRK11587 putative phosphatase; 98.3 1.9E-05 4.1E-10 78.2 16.0 97 324-463 82-182 (218)
23 PF13419 HAD_2: Haloacid dehal 98.3 1.2E-06 2.5E-11 80.6 6.5 104 321-462 73-176 (176)
24 COG1011 Predicted hydrolase (H 98.3 1.3E-05 2.8E-10 78.6 13.5 107 323-467 97-203 (229)
25 TIGR01509 HAD-SF-IA-v3 haloaci 98.2 4.8E-06 1E-10 78.5 9.4 109 313-462 75-183 (183)
26 TIGR01428 HAD_type_II 2-haloal 98.2 3.2E-06 6.9E-11 81.9 7.7 102 325-464 92-193 (198)
27 TIGR01548 HAD-SF-IA-hyp1 haloa 98.2 4.8E-05 1E-09 74.1 15.2 85 331-453 112-196 (197)
28 PRK09456 ?-D-glucose-1-phospha 98.2 9.9E-06 2.1E-10 79.1 9.9 103 324-463 83-185 (199)
29 PLN02919 haloacid dehalogenase 98.1 0.0001 2.2E-09 89.7 17.7 103 326-466 162-265 (1057)
30 TIGR01454 AHBA_synth_RP 3-amin 98.0 1.1E-05 2.3E-10 78.9 7.4 103 323-463 73-175 (205)
31 COG0546 Gph Predicted phosphat 98.0 0.00014 3.1E-09 72.6 15.1 100 323-463 87-189 (220)
32 PLN02770 haloacid dehalogenase 98.0 1.9E-05 4E-10 80.3 8.2 102 324-463 107-208 (248)
33 TIGR01449 PGP_bact 2-phosphogl 98.0 2.6E-05 5.7E-10 75.9 8.7 105 321-463 81-185 (213)
34 TIGR01662 HAD-SF-IIIA HAD-supe 97.9 2E-05 4.4E-10 71.8 6.8 99 323-464 23-132 (132)
35 PRK09449 dUMP phosphatase; Pro 97.9 2.7E-05 5.8E-10 76.8 7.3 103 324-464 94-197 (224)
36 PRK14988 GMP/IMP nucleotidase; 97.8 3E-05 6.5E-10 77.9 6.0 104 324-465 92-195 (224)
37 TIGR02254 YjjG/YfnB HAD superf 97.7 8.5E-05 1.8E-09 72.6 7.2 102 325-464 97-199 (224)
38 TIGR01990 bPGM beta-phosphoglu 97.7 6.5E-05 1.4E-09 71.4 5.9 98 325-462 87-184 (185)
39 TIGR01691 enolase-ppase 2,3-di 97.7 0.00013 2.7E-09 74.1 8.2 103 325-466 95-199 (220)
40 cd01427 HAD_like Haloacid deha 97.7 8.6E-05 1.9E-09 64.9 6.1 113 324-462 23-139 (139)
41 TIGR02009 PGMB-YQAB-SF beta-ph 97.6 0.0001 2.2E-09 70.0 6.7 100 323-462 86-185 (185)
42 TIGR01993 Pyr-5-nucltdase pyri 97.6 9E-05 1.9E-09 71.2 6.1 102 324-462 83-184 (184)
43 TIGR01668 YqeG_hyp_ppase HAD s 97.6 0.00011 2.4E-09 70.9 6.0 95 326-466 44-139 (170)
44 PLN02779 haloacid dehalogenase 97.5 0.00017 3.6E-09 75.4 7.1 105 324-464 143-247 (286)
45 PLN02811 hydrolase 97.5 0.00029 6.4E-09 70.0 7.5 101 327-463 80-184 (220)
46 KOG3085 Predicted hydrolase (H 97.4 0.00099 2.1E-08 68.6 10.5 105 320-463 109-213 (237)
47 TIGR01685 MDP-1 magnesium-depe 97.3 0.00045 9.7E-09 67.9 7.0 109 327-464 47-158 (174)
48 PLN02954 phosphoserine phospha 97.3 0.0046 1E-07 61.0 14.1 37 326-362 85-121 (224)
49 PRK10748 flavin mononucleotide 97.3 0.00037 8E-09 70.4 5.8 99 324-465 112-210 (238)
50 TIGR01656 Histidinol-ppas hist 97.2 0.00047 1E-08 64.7 5.1 104 325-463 27-145 (147)
51 TIGR01261 hisB_Nterm histidino 97.2 0.00079 1.7E-08 65.0 6.6 107 323-464 27-148 (161)
52 TIGR01549 HAD-SF-IA-v1 haloaci 97.1 0.00083 1.8E-08 62.3 5.5 86 328-453 67-152 (154)
53 PRK06769 hypothetical protein; 97.0 0.0009 1.9E-08 64.8 5.4 96 326-464 29-138 (173)
54 PRK06698 bifunctional 5'-methy 97.0 0.0016 3.4E-08 72.2 7.2 99 325-464 330-428 (459)
55 PRK08942 D,D-heptose 1,7-bisph 96.9 0.0021 4.6E-08 62.1 6.4 108 326-464 30-148 (181)
56 COG2179 Predicted hydrolase of 96.9 0.0012 2.6E-08 64.7 4.7 92 327-465 48-140 (175)
57 KOG3109 Haloacid dehalogenase- 96.7 0.024 5.3E-07 58.0 12.7 111 320-466 95-208 (244)
58 PRK11590 hypothetical protein; 96.7 0.053 1.1E-06 53.9 14.9 95 325-449 95-190 (211)
59 TIGR01681 HAD-SF-IIIC HAD-supe 96.6 0.0019 4.1E-08 59.7 3.9 84 328-446 32-120 (128)
60 PRK05446 imidazole glycerol-ph 96.6 0.0058 1.3E-07 66.4 7.6 106 324-464 29-149 (354)
61 TIGR00213 GmhB_yaeD D,D-heptos 96.5 0.0067 1.5E-07 58.5 6.9 113 326-463 27-150 (176)
62 TIGR01664 DNA-3'-Pase DNA 3'-p 96.5 0.0059 1.3E-07 59.1 6.3 103 319-460 36-159 (166)
63 PRK11133 serB phosphoserine ph 96.2 0.12 2.5E-06 55.6 14.9 106 324-460 180-288 (322)
64 TIGR01458 HAD-SF-IIA-hyp3 HAD- 96.2 0.0016 3.4E-08 67.1 0.5 101 329-464 124-225 (257)
65 TIGR01491 HAD-SF-IB-PSPlk HAD- 96.1 0.026 5.7E-07 54.2 8.7 109 325-461 80-188 (201)
66 smart00577 CPDc catalytic doma 96.0 0.017 3.7E-07 54.5 6.8 87 321-451 41-131 (148)
67 COG0637 Predicted phosphatase/ 95.3 0.19 4.1E-06 50.7 11.6 102 325-464 86-187 (221)
68 TIGR01489 DKMTPPase-SF 2,3-dik 95.2 0.12 2.7E-06 48.9 9.5 51 324-383 71-121 (188)
69 TIGR01452 PGP_euk phosphoglyco 95.2 0.0059 1.3E-07 63.3 0.3 37 426-463 211-247 (279)
70 TIGR00338 serB phosphoserine p 94.8 0.071 1.5E-06 52.4 6.7 105 324-459 84-191 (219)
71 TIGR01672 AphA HAD superfamily 94.7 0.074 1.6E-06 54.9 6.9 98 321-463 110-211 (237)
72 COG0647 NagD Predicted sugar p 94.7 0.14 3E-06 54.0 8.7 37 427-464 200-236 (269)
73 PF09419 PGP_phosphatase: Mito 94.6 0.12 2.6E-06 50.9 7.7 89 327-462 61-163 (168)
74 TIGR01686 FkbH FkbH-like domai 94.6 0.045 9.7E-07 58.1 5.1 86 328-454 34-122 (320)
75 TIGR01493 HAD-SF-IA-v2 Haloaci 94.4 0.02 4.3E-07 54.2 1.8 84 326-453 91-174 (175)
76 PRK09552 mtnX 2-hydroxy-3-keto 94.3 0.21 4.6E-06 49.7 8.8 40 324-363 73-112 (219)
77 PF00702 Hydrolase: haloacid d 94.0 0.07 1.5E-06 51.3 4.6 82 327-452 129-212 (215)
78 PHA02597 30.2 hypothetical pro 94.0 0.17 3.7E-06 49.1 7.2 101 324-465 73-176 (197)
79 TIGR02726 phenyl_P_delta pheny 93.6 0.067 1.4E-06 52.4 3.7 109 303-461 14-123 (169)
80 TIGR01459 HAD-SF-IIA-hyp4 HAD- 93.4 0.032 6.9E-07 56.5 1.0 100 328-463 141-241 (242)
81 TIGR01670 YrbI-phosphatas 3-de 93.2 0.064 1.4E-06 51.0 2.7 83 333-463 36-118 (154)
82 TIGR01490 HAD-SF-IB-hyp1 HAD-s 93.0 0.19 4.1E-06 48.7 5.8 107 327-464 89-198 (202)
83 KOG2469 IMP-GMP specific 5'-nu 92.3 0.0021 4.6E-08 70.3 -9.6 241 137-404 37-290 (424)
84 PF13242 Hydrolase_like: HAD-h 91.4 0.17 3.7E-06 42.3 2.9 41 424-465 11-51 (75)
85 TIGR01684 viral_ppase viral ph 91.0 0.36 7.9E-06 51.6 5.5 69 308-390 133-202 (301)
86 TIGR01488 HAD-SF-IB Haloacid D 90.7 0.64 1.4E-05 43.8 6.4 37 326-362 74-110 (177)
87 PHA02530 pseT polynucleotide k 90.5 0.31 6.7E-06 50.5 4.4 105 327-462 189-295 (300)
88 TIGR03333 salvage_mtnX 2-hydro 90.4 1.9 4.2E-05 42.8 9.8 48 315-362 60-107 (214)
89 TIGR01663 PNK-3'Pase polynucle 89.9 0.56 1.2E-05 53.8 6.2 35 318-352 190-224 (526)
90 PRK08238 hypothetical protein; 89.9 0.81 1.8E-05 51.9 7.4 46 327-384 74-119 (479)
91 PHA03398 viral phosphatase sup 89.3 0.59 1.3E-05 50.1 5.4 69 308-390 135-204 (303)
92 PRK09484 3-deoxy-D-manno-octul 88.8 0.38 8.3E-06 47.0 3.4 81 332-459 55-135 (183)
93 PRK13582 thrH phosphoserine ph 88.7 1.2 2.6E-05 43.3 6.7 37 325-362 68-104 (205)
94 TIGR01457 HAD-SF-IIA-hyp2 HAD- 86.9 0.55 1.2E-05 48.2 3.3 37 426-463 187-223 (249)
95 TIGR02251 HIF-SF_euk Dullard-l 86.3 1 2.3E-05 43.4 4.7 55 319-382 36-90 (162)
96 PRK11009 aphA acid phosphatase 85.4 2 4.3E-05 44.5 6.5 66 311-384 100-170 (237)
97 TIGR01459 HAD-SF-IIA-hyp4 HAD- 85.1 1.1 2.4E-05 45.5 4.4 49 327-384 26-77 (242)
98 PTZ00445 p36-lilke protein; Pr 84.4 1.4 3E-05 45.3 4.7 146 304-463 55-205 (219)
99 PLN02645 phosphoglycolate phos 82.6 1 2.2E-05 47.8 3.1 37 426-463 239-275 (311)
100 PRK03669 mannosyl-3-phosphogly 81.3 1.5 3.2E-05 45.2 3.6 42 149-192 2-43 (271)
101 TIGR01525 ATPase-IB_hvy heavy 81.0 1.3 2.8E-05 50.7 3.4 36 327-362 386-422 (556)
102 TIGR01460 HAD-SF-IIA Haloacid 79.5 1.5 3.3E-05 44.5 3.0 38 425-463 196-234 (236)
103 TIGR01545 YfhB_g-proteo haloac 79.5 7.1 0.00015 39.3 7.7 94 326-449 95-189 (210)
104 TIGR01456 CECR5 HAD-superfamil 79.2 1.2 2.6E-05 47.6 2.1 28 435-463 264-291 (321)
105 TIGR01512 ATPase-IB2_Cd heavy 78.8 2.3 4.9E-05 48.7 4.4 35 328-362 365-400 (536)
106 TIGR02137 HSK-PSP phosphoserin 78.4 5.6 0.00012 39.9 6.6 37 325-362 68-104 (203)
107 PF06888 Put_Phosphatase: Puta 77.9 7 0.00015 40.5 7.3 114 325-461 71-195 (234)
108 PRK10444 UMP phosphatase; Prov 77.5 2.1 4.5E-05 44.3 3.3 37 426-463 183-219 (248)
109 TIGR02250 FCP1_euk FCP1-like p 76.8 4.3 9.2E-05 39.3 5.0 43 319-362 52-94 (156)
110 TIGR01544 HAD-SF-IE haloacid d 75.3 22 0.00047 37.9 10.2 105 324-454 120-230 (277)
111 PF13344 Hydrolase_6: Haloacid 75.0 3.1 6.7E-05 37.2 3.3 32 327-358 16-51 (101)
112 TIGR01487 SPP-like sucrose-pho 73.5 3.1 6.8E-05 41.0 3.3 30 423-453 152-181 (215)
113 PHA02597 30.2 hypothetical pro 73.4 2.6 5.5E-05 40.9 2.6 14 154-167 2-15 (197)
114 COG0561 Cof Predicted hydrolas 72.8 3 6.5E-05 42.4 3.0 38 153-192 2-39 (264)
115 PLN02770 haloacid dehalogenase 72.1 4.1 8.9E-05 41.5 3.8 36 151-191 19-54 (248)
116 PRK10748 flavin mononucleotide 70.6 2.2 4.9E-05 43.1 1.5 21 150-170 6-26 (238)
117 PLN02779 haloacid dehalogenase 68.4 5.3 0.00011 42.0 3.8 36 152-191 38-73 (286)
118 PRK09449 dUMP phosphatase; Pro 67.2 4.8 0.0001 39.7 3.0 32 153-191 2-33 (224)
119 PF05152 DUF705: Protein of un 67.2 9.2 0.0002 41.0 5.2 67 318-393 135-201 (297)
120 TIGR01511 ATPase-IB1_Cu copper 67.2 7.3 0.00016 44.9 4.9 35 328-362 408-442 (562)
121 TIGR02254 YjjG/YfnB HAD superf 65.0 6.2 0.00013 38.5 3.3 18 154-171 1-18 (224)
122 PRK10530 pyridoxal phosphate ( 63.9 7.4 0.00016 39.4 3.7 33 423-457 204-236 (272)
123 TIGR01662 HAD-SF-IIIA HAD-supe 62.5 4.6 0.0001 36.6 1.7 38 155-192 1-44 (132)
124 TIGR01993 Pyr-5-nucltdase pyri 62.1 9.8 0.00021 36.5 4.0 35 155-191 1-37 (184)
125 PRK10513 sugar phosphate phosp 59.8 8.4 0.00018 39.2 3.3 37 153-191 2-38 (270)
126 PRK01158 phosphoglycolate phos 58.7 9.3 0.0002 37.7 3.3 35 422-458 161-195 (230)
127 TIGR02009 PGMB-YQAB-SF beta-ph 58.6 11 0.00025 35.6 3.8 16 154-169 1-16 (185)
128 TIGR01664 DNA-3'-Pase DNA 3'-p 57.2 7.1 0.00015 37.9 2.1 40 153-192 12-61 (166)
129 PRK14988 GMP/IMP nucleotidase; 55.8 6.6 0.00014 39.6 1.7 20 149-168 5-24 (224)
130 TIGR01689 EcbF-BcbF capsule bi 55.6 8.5 0.00018 36.3 2.3 15 155-169 2-16 (126)
131 COG0560 SerB Phosphoserine pho 55.0 25 0.00055 35.6 5.7 39 324-362 76-114 (212)
132 PF08645 PNK3P: Polynucleotide 54.5 11 0.00023 36.6 2.8 34 317-350 21-54 (159)
133 PTZ00174 phosphomannomutase; P 54.2 14 0.0003 37.7 3.8 37 153-191 4-40 (247)
134 TIGR01684 viral_ppase viral ph 53.2 12 0.00027 40.3 3.3 47 148-195 120-168 (301)
135 PRK13582 thrH phosphoserine ph 53.2 11 0.00024 36.5 2.8 21 430-451 140-160 (205)
136 TIGR01670 YrbI-phosphatas 3-de 52.9 15 0.00032 34.9 3.5 39 154-192 1-47 (154)
137 PRK00192 mannosyl-3-phosphogly 52.9 13 0.00029 38.3 3.4 36 423-460 195-231 (273)
138 PF08645 PNK3P: Polynucleotide 52.6 8 0.00017 37.4 1.6 17 155-171 1-17 (159)
139 PRK10976 putative hydrolase; P 52.2 14 0.0003 37.5 3.4 37 154-192 2-38 (266)
140 COG0731 Fe-S oxidoreductases [ 52.1 12 0.00026 40.3 3.0 80 263-352 32-120 (296)
141 TIGR02461 osmo_MPG_phos mannos 50.9 13 0.00028 37.7 3.0 34 156-192 1-34 (225)
142 TIGR01689 EcbF-BcbF capsule bi 50.4 18 0.00039 34.1 3.6 100 307-434 7-123 (126)
143 PLN02645 phosphoglycolate phos 50.2 17 0.00037 38.6 3.8 65 306-384 33-97 (311)
144 cd01427 HAD_like Haloacid deha 49.1 14 0.0003 31.9 2.4 15 156-170 1-15 (139)
145 PRK15126 thiamin pyrimidine py 48.9 14 0.00031 37.8 2.9 26 423-449 193-218 (272)
146 TIGR01449 PGP_bact 2-phosphogl 48.8 15 0.00033 35.6 2.9 30 157-191 1-30 (213)
147 TIGR00338 serB phosphoserine p 48.6 9.6 0.00021 37.4 1.5 19 151-169 11-29 (219)
148 TIGR02463 MPGP_rel mannosyl-3- 46.8 19 0.00041 35.5 3.3 33 157-191 2-34 (221)
149 PHA03398 viral phosphatase sup 45.9 18 0.0004 39.1 3.2 48 148-196 122-171 (303)
150 TIGR01482 SPP-subfamily Sucros 44.9 14 0.0003 36.3 2.0 33 157-191 1-33 (225)
151 smart00775 LNS2 LNS2 domain. T 44.6 20 0.00043 34.6 3.0 14 156-169 1-14 (157)
152 TIGR01990 bPGM beta-phosphoglu 44.4 17 0.00036 34.4 2.4 31 156-191 1-31 (185)
153 PRK08883 ribulose-phosphate 3- 41.6 18 0.00038 37.1 2.2 128 294-446 47-200 (220)
154 PF11019 DUF2608: Protein of u 41.5 73 0.0016 33.3 6.8 47 318-364 74-120 (252)
155 TIGR01681 HAD-SF-IIIC HAD-supe 40.1 29 0.00062 32.0 3.2 14 155-168 1-14 (128)
156 TIGR01458 HAD-SF-IIA-hyp3 HAD- 39.3 27 0.00058 36.1 3.2 27 327-353 23-49 (257)
157 TIGR01428 HAD_type_II 2-haloal 38.8 16 0.00035 35.3 1.4 17 154-170 1-17 (198)
158 COG0241 HisB Histidinol phosph 38.6 79 0.0017 31.8 6.2 23 327-349 33-55 (181)
159 PF09949 DUF2183: Uncharacteri 37.7 51 0.0011 30.0 4.3 27 344-370 2-28 (100)
160 PRK08745 ribulose-phosphate 3- 37.3 32 0.00068 35.5 3.3 128 295-446 52-204 (223)
161 PLN02887 hydrolase family prot 37.1 33 0.00072 40.2 3.7 28 423-451 512-539 (580)
162 TIGR00213 GmhB_yaeD D,D-heptos 36.4 34 0.00074 32.9 3.2 38 155-192 2-45 (176)
163 TIGR01491 HAD-SF-IB-PSPlk HAD- 36.0 19 0.00041 34.4 1.4 17 154-170 4-20 (201)
164 PF12710 HAD: haloacid dehalog 34.7 33 0.00072 32.4 2.8 35 328-362 92-126 (192)
165 PF06941 NT5C: 5' nucleotidase 34.5 19 0.00041 35.2 1.1 28 326-353 74-101 (191)
166 TIGR01457 HAD-SF-IIA-hyp2 HAD- 33.0 47 0.001 34.1 3.7 22 328-349 20-41 (249)
167 cd06280 PBP1_LacI_like_4 Ligan 32.7 81 0.0018 31.2 5.3 25 139-163 172-211 (263)
168 COG4850 Uncharacterized conser 32.5 51 0.0011 36.3 3.9 56 328-383 199-259 (373)
169 smart00775 LNS2 LNS2 domain. T 32.2 41 0.00089 32.4 3.0 37 327-363 29-65 (157)
170 PLN02423 phosphomannomutase 31.8 46 0.001 34.2 3.5 34 152-187 4-38 (245)
171 PRK12702 mannosyl-3-phosphogly 31.6 47 0.001 36.0 3.5 37 154-192 1-37 (302)
172 PRK14502 bifunctional mannosyl 31.6 80 0.0017 37.9 5.7 44 147-192 409-452 (694)
173 TIGR00099 Cof-subfamily Cof su 31.5 37 0.00081 34.3 2.7 34 156-191 1-34 (256)
174 COG5610 Predicted hydrolase (H 31.3 96 0.0021 35.8 5.9 114 319-468 92-207 (635)
175 PF00702 Hydrolase: haloacid d 31.2 25 0.00055 33.6 1.4 18 154-171 1-18 (215)
176 PF12689 Acid_PPase: Acid Phos 31.2 24 0.00053 34.9 1.3 11 155-165 4-14 (169)
177 PF00834 Ribul_P_3_epim: Ribul 30.8 86 0.0019 31.8 5.1 51 328-391 92-142 (201)
178 PRK10444 UMP phosphatase; Prov 30.7 44 0.00096 34.6 3.1 36 327-362 19-54 (248)
179 PF10146 zf-C4H2: Zinc finger- 30.3 3E+02 0.0065 28.7 9.0 11 463-473 34-44 (230)
180 PRK10727 DNA-binding transcrip 30.1 1E+02 0.0022 32.3 5.7 68 139-207 237-329 (343)
181 TIGR01509 HAD-SF-IA-v3 haloaci 29.9 19 0.00041 33.7 0.3 16 156-171 1-16 (183)
182 PRK06769 hypothetical protein; 29.8 39 0.00084 32.7 2.4 45 151-195 1-50 (173)
183 TIGR01672 AphA HAD superfamily 29.2 27 0.00059 36.2 1.3 14 156-169 65-78 (237)
184 PF03031 NIF: NLI interacting 29.2 76 0.0017 29.7 4.2 53 320-381 31-83 (159)
185 cd06270 PBP1_GalS_like Ligand 28.6 1.5E+02 0.0033 29.3 6.5 24 139-162 177-215 (268)
186 PRK10671 copA copper exporting 28.6 51 0.0011 40.0 3.6 35 328-362 653-687 (834)
187 TIGR01261 hisB_Nterm histidino 28.3 61 0.0013 31.3 3.4 38 155-192 2-48 (161)
188 TIGR01493 HAD-SF-IA-v2 Haloaci 27.7 26 0.00056 33.0 0.7 14 156-169 1-14 (175)
189 TIGR00685 T6PP trehalose-phosp 27.6 28 0.00062 35.4 1.1 39 424-463 173-217 (244)
190 PF02358 Trehalose_PPase: Treh 27.0 40 0.00087 34.0 2.0 29 159-187 2-30 (235)
191 cd06289 PBP1_MalI_like Ligand- 26.7 1.7E+02 0.0036 28.8 6.3 24 139-162 178-216 (268)
192 TIGR01486 HAD-SF-IIB-MPGP mann 26.5 59 0.0013 33.1 3.1 29 423-452 181-211 (256)
193 PRK08942 D,D-heptose 1,7-bisph 26.4 56 0.0012 31.5 2.8 17 153-170 2-18 (181)
194 KOG2961 Predicted hydrolase (H 25.7 54 0.0012 32.7 2.5 45 420-465 121-169 (190)
195 cd06296 PBP1_CatR_like Ligand- 25.0 1.5E+02 0.0032 29.3 5.6 67 139-205 178-268 (270)
196 PF08444 Gly_acyl_tr_C: Aralky 24.7 61 0.0013 29.1 2.5 32 161-192 24-55 (89)
197 PF03962 Mnd1: Mnd1 family; I 24.7 2E+02 0.0044 28.9 6.5 10 389-398 4-13 (188)
198 PF08282 Hydrolase_3: haloacid 24.6 57 0.0012 31.6 2.5 33 157-191 1-33 (254)
199 PRK06698 bifunctional 5'-methy 24.5 51 0.0011 36.9 2.4 16 154-169 241-256 (459)
200 TIGR01454 AHBA_synth_RP 3-amin 24.4 29 0.00062 33.8 0.4 30 157-191 1-31 (205)
201 TIGR02417 fruct_sucro_rep D-fr 23.2 65 0.0014 33.3 2.8 66 139-205 238-327 (327)
202 TIGR01522 ATPase-IIA2_Ca golgi 23.2 1E+02 0.0022 37.7 4.8 95 328-445 531-628 (884)
203 KOG2882 p-Nitrophenyl phosphat 22.6 71 0.0015 34.7 2.9 41 431-472 238-278 (306)
204 PF10146 zf-C4H2: Zinc finger- 22.3 4.6E+02 0.01 27.4 8.7 14 478-491 36-49 (230)
205 TIGR01663 PNK-3'Pase polynucle 22.2 56 0.0012 37.9 2.2 40 152-192 166-216 (526)
206 TIGR01656 Histidinol-ppas hist 21.9 72 0.0016 29.8 2.6 37 155-191 1-45 (147)
207 TIGR01668 YqeG_hyp_ppase HAD s 21.8 1E+02 0.0022 29.8 3.6 41 150-192 21-62 (170)
208 TIGR01484 HAD-SF-IIB HAD-super 21.7 82 0.0018 30.6 3.0 32 157-189 2-33 (204)
209 PF13419 HAD_2: Haloacid dehal 20.8 72 0.0016 28.9 2.3 14 157-170 1-14 (176)
210 TIGR01533 lipo_e_P4 5'-nucleot 20.7 97 0.0021 32.8 3.5 36 327-362 120-155 (266)
211 cd06275 PBP1_PurR Ligand-bindi 20.6 1.8E+02 0.004 28.6 5.3 24 139-162 178-216 (269)
212 PRK09722 allulose-6-phosphate 20.0 83 0.0018 32.7 2.7 51 329-392 96-146 (229)
No 1
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=100.00 E-value=1.1e-144 Score=1176.26 Aligned_cols=440 Identities=43% Similarity=0.700 Sum_probs=353.1
Q ss_pred eEecCccccCCccEEEEecccceeeeCccchHHHHHHHHHHHHhh-cCCCCCC--CCCCccccccceEeecCCCcEEeec
Q 006817 143 IFCSRTLNLRSISAIGYDMDYTLMHYNVMAWEGRAYDYCMVNLRN-MGFPVEG--LAFDPDLVIRGLVIDKEKGNLVKAD 219 (630)
Q Consensus 143 IF~Nr~L~L~~I~~iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~-~gYP~~~--L~yDp~F~iRGLv~D~~~GnLLKvD 219 (630)
|||||+|+|++|+|||||||||||+|++++++.|||++++++||+ +|||+++ ++|||+|+|||||||+++|||||||
T Consensus 1 VF~Nr~l~l~~i~~iGFDmDyTLa~Y~~~~~~~L~y~~~~~~LV~~~gYP~~ll~~~~dp~F~iRGL~~D~~~GnlLKld 80 (448)
T PF05761_consen 1 VFVNRSLNLKDIDVIGFDMDYTLARYKSPELEELIYELARERLVEEKGYPEELLNLEYDPDFAIRGLVIDKERGNLLKLD 80 (448)
T ss_dssp -EESS-EECCC--EEEE-TBTTTBEE-CCHHHHHHHHHHHHHHHHHTT--GGGGG----CCC--TTEEEETTTTEEEEEB
T ss_pred CeeCCccccccCCEEEECcccchhhcCHHHHHHHHHHHHHHHHHhccCCCHHHhCCCCchhhhhcceeeEcccCeEEEEc
Confidence 899999999999999999999999999999999999999999996 9999885 5799999999999999999999999
Q ss_pred CCCcEEEEeeccccccHhHHHHHhcCeeccccccccchhhhhhhchhHHHHHHHHHHhhh--cCCCCCCCCCCChHHHHH
Q 006817 220 RFGYVKRAMHGTTMLSNRAVSEMYGRELVDLRKESRWEFLNTLFSVSEAVAYMQMVNRLD--EGAIGPELGPLDYKGLYK 297 (630)
Q Consensus 220 ~~g~I~~a~HG~~~Ls~eEi~e~Yg~~~i~~~~~~r~~~l~tlFslpEa~L~a~lVd~~d--~~~~~~~l~~~~y~~L~~ 297 (630)
++|+|++|+||+++|+.+||+++||+++++.....+|.+++|+||+||+||||++||++| .+.+ .++|..||+
T Consensus 81 ~~g~I~~a~hG~~~l~~eei~~~Y~~~~i~~~~~~~~~~l~tlFslpe~~L~a~lvd~~d~~~~~~-----~~~~~~l~~ 155 (448)
T PF05761_consen 81 RFGYILRAYHGFRPLSDEEIRELYGNKFIPLSDDSRFFQLNTLFSLPEAYLFAQLVDYFDVEDGNI-----EYDYRSLYQ 155 (448)
T ss_dssp TTSBEEEEEETTEEE-HHHHCCCCTTSB--TTSTTTEEEE-SCCHHHHHHHHHHHHHHHHECCTTC-----CEEHHHHHH
T ss_pred CCCcEEEEEeccccCCHHHHHHhcCCcccccchhhHHHHHhhHhhhhHHHHHHHHHHHhhcccCCC-----CCCHHHHHH
Confidence 999999999999999999999999999999877669999999999999999999999999 4433 288999999
Q ss_pred HHHHHHHhccchhhhHHHHHcCcccccccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCc
Q 006817 298 AVGKALFRAHVEGQLKSEIMSKPELFVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLF 377 (630)
Q Consensus 298 DV~~Av~~vH~~G~lk~~v~~npekYI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~F 377 (630)
||++||++||.+|.||++|++||+|||+|+|+++++|++||++||||||||||+|+|||++|+|++|..+++++|||+||
T Consensus 156 DV~~Avd~~H~~G~lk~~v~~dp~kYi~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~dW~dlF 235 (448)
T PF05761_consen 156 DVRDAVDHVHRDGSLKREVKEDPEKYIHKDPKLPPWLERLRSAGKKLFLITNSPFDYTNAVMSYLLGPFLGEDPDWRDLF 235 (448)
T ss_dssp HHHHHHHHHHHCSCHHHHHHTTCCCCEE--CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHHHHHCGCCSSTTT-GGGCE
T ss_pred HHHHHHHHHhcchHHHHHHHHCHHHHccCCchHHHHHHHHHhcCceEEEecCCCCchhhhhhhhccCCCCCCCCChhhhe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEccCCCCCCCCCCCcEEeeCCCCccccc---ccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhccccc
Q 006817 378 NMVIVSARKPEFFQMSHPLYEVVTGEGLMRPC---FKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVH 454 (630)
Q Consensus 378 DvVIv~A~KP~FF~~~~pf~~v~~~~g~l~~~---~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDI~~sKk~ 454 (630)
|||||+|+||+||++++|||+|++++|.+.+. ..+++|+||+|||+++|++++||+|++||||||||||||++||+.
T Consensus 236 DvVIv~A~KP~FF~~~~pfr~vd~~~g~l~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~g~~VLY~GDhi~~Di~~~k~~ 315 (448)
T PF05761_consen 236 DVVIVDARKPGFFTEGRPFREVDTETGKLKWGKYVGPLEKGKVYSGGNWDQLHKLLGWRGKEVLYFGDHIYGDILKSKKR 315 (448)
T ss_dssp CEEEES--CCHHHCT---EEEEETTTSSEECS---SS--TC-EEEE--HHHHHHHCT--GGGEEEEESSTTTTHHHHHHH
T ss_pred eEEEEcCCCCcccCCCCceEEEECCCCccccccccccccCCCEeecCCHHHHHHHHccCCCeEEEECCchhhhhhhhccc
Confidence 99999999999999999999999999998764 479999999999999999999999999999999999999999999
Q ss_pred cCceEEeehHhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhhhhccccChHHHHHHHHHHH
Q 006817 455 LRWRTALICRELEEEYNALINSRGQRARLVELINQKEVVGDLFNQLRLSLQRRNRGHPAQTLAATNMDDQELTESMQKLL 534 (630)
Q Consensus 455 ~gWRT~aIVpELe~Ei~i~~~~~~~~~~l~~L~~~~~~l~d~~~~l~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 534 (630)
+||||+|||||||+||++|+..+..+++|..|..+.+.+.+.+.+++ +.++++
T Consensus 316 ~gWrT~~Ii~ELe~Ei~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~---------------------------~~~~~~ 368 (448)
T PF05761_consen 316 HGWRTAAIIPELEQEIEIWNSKKYRFEELQELEELLEELQDHLDQLR---------------------------SSSELR 368 (448)
T ss_dssp H-SEEEEE-TTHHHHHHHHHHTHHHHHHHHHHHHHCHHHHCHHHHHH---------------------------HHHHHH
T ss_pred cceEEEEEehhhhhhhhhhhhcchhhhHHHHHHHHHHHHHHHhcccc---------------------------cchhhH
Confidence 99999999999999999998877777777766554444444332211 223344
Q ss_pred HHHHHHHhhhhhhhhhcccccccccccccccCCCCCChhhhhhcccchhhcccccccccCCCCcccccCCcCCCCCcccc
Q 006817 535 VVMQRLDQKIAPMLESDGELFNKRWGFLSRAGLWDKSHLMRQIEKYADIYTSRVSNFLHYTPFMYFRSQEQTLAHDSYSY 614 (630)
Q Consensus 535 ~~~~~~d~~~~~~~~~~~~lFN~~fGslfRtg~~~~S~Fa~Qv~RyADLYtS~vsNLL~Ysp~~~Fr~~r~~lpHE~~~~ 614 (630)
..+++++++++.+.+++++.|||+||||||||+ ++|+||+||+||||||||+|+|||+|||+++|||+|++||||+++|
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~fn~~~GslfRtg~-~~s~Fa~qv~RyAdlYtS~v~Nll~y~~~~~Fr~~~~~lpHE~~~~ 447 (448)
T PF05761_consen 369 PDISELRKERRELRREMKELFNPQFGSLFRTGH-NPSYFARQVERYADLYTSSVSNLLNYSPNYYFRPPRDLLPHESTVW 447 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT-TTT-BSSEETT-EEBHHHHHHHHH-SEEESSHHHHHHS-TT-EE-------CCG----
T ss_pred HHHHHHHHHHHHHHHHHhhhcccchHHHHhcCC-CccHHHHHHHHHhhhhhccccHHHhCCcceEEeCCCCCCCCCCCCC
Confidence 455566677777778889999999999999997 9999999999999999999999999999999999999999999988
Q ss_pred c
Q 006817 615 Y 615 (630)
Q Consensus 615 ~ 615 (630)
.
T Consensus 448 ~ 448 (448)
T PF05761_consen 448 H 448 (448)
T ss_dssp -
T ss_pred C
Confidence 4
No 2
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=100.00 E-value=2.6e-130 Score=1010.80 Aligned_cols=470 Identities=29% Similarity=0.482 Sum_probs=423.8
Q ss_pred CcCCCCCCcCCCCchHHHHHHHHHHHHHhhhhCCCCCCCCCCCCCeeEecCccccCCccEEEEecccceeeeCccchHHH
Q 006817 97 PVGIDGEAALDGPIEEVARMEAQEAEHLLNDFGIPSPSSARNSPRGIFCSRTLNLRSISAIGYDMDYTLMHYNVMAWEGR 176 (630)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~IF~Nr~L~L~~I~~iGFDmDYTLa~Y~~~~~e~L 176 (630)
+..++.|++.+..|....|+...+++ +.|.+|+..++.+||++||+|++++|++|++||||||||||+|.+. ++.|
T Consensus 11 a~~l~e~~~~~~e~t~~~he~~~~~~---r~l~ip~~i~sllnp~aiy~nne~sl~dievygfdydytla~ys~h-lh~l 86 (510)
T KOG2470|consen 11 AVALPECSTVEDEITKIRHEFELAKQ---RFLNIPEAINSLLNPQAIYVNNELSLDDIEVYGFDYDYTLAHYSSH-LHSL 86 (510)
T ss_pred ccccccCCcchHHHHHHhhhhhhccc---cccCCCHHHHhccChhheeecCcccccceeEeccccchhHHHHHHH-HHHH
Confidence 45678999999999998777776666 5677999999999999999999999999999999999999999976 9999
Q ss_pred HHHHHHHHHh-hcCCCCCC--CCCCccccccceEeecCCCcEEeecCCCcEEE--EeeccccccHhHHHHHhcCeecccc
Q 006817 177 AYDYCMVNLR-NMGFPVEG--LAFDPDLVIRGLVIDKEKGNLVKADRFGYVKR--AMHGTTMLSNRAVSEMYGRELVDLR 251 (630)
Q Consensus 177 ~y~~~~~~Lv-~~gYP~~~--L~yDp~F~iRGLv~D~~~GnLLKvD~~g~I~~--a~HG~~~Ls~eEi~e~Yg~~~i~~~ 251 (630)
||+++++.|| ++.||+.+ ++|||+|+||||++|+++|.|||+|+||+|+. ||+|.++++++||.++||+.+|++.
T Consensus 87 if~~ard~lvn~frYPe~i~q~eYdPnFaIRGLhYDv~kglLmKlDaF~~iqlgt~YrGr~kv~~eEvi~mY~~rhipl~ 166 (510)
T KOG2470|consen 87 IFDLARDHLVNEFRYPEVIRQYEYDPNFAIRGLHYDVQKGLLMKLDAFHYIQLGTVYRGRRKVPDEEVIEMYGGRHIPLD 166 (510)
T ss_pred HHHHHHHHHHHhccChHHhhhcccCCCcccchhhhHhhhhhheeeccceeeccCceeecCccCCHHHHHHHhcCCccCHH
Confidence 9999999998 59999775 58999999999999999999999999999995 8999999999999999999999986
Q ss_pred cc-------ccchhhhhhhchhHHHHHHHHHHhhhcCCCCCCCCCCChHHHHHHHHHHHHhccchhhhHHHHHcCccccc
Q 006817 252 KE-------SRWEFLNTLFSVSEAVAYMQMVNRLDEGAIGPELGPLDYKGLYKAVGKALFRAHVEGQLKSEIMSKPELFV 324 (630)
Q Consensus 252 ~~-------~r~~~l~tlFslpEa~L~a~lVd~~d~~~~~~~l~~~~y~~L~~DV~~Av~~vH~~G~lk~~v~~npekYI 324 (630)
+. +.+.+|+|+||+|||||++|+|+||..+.+. +++..+|+||++||..||+.|.+ +|.+|+||||
T Consensus 167 q~~g~~~k~~~mvqlmDiFs~pEmcLls~vveYF~~~~le-----fd~~~ly~Dv~~ai~~vH~~~~~--~i~~~~ekyi 239 (510)
T KOG2470|consen 167 QMSGFYGKGSKMVQLMDIFSLPEMCLLSCVVEYFLDNKLE-----FDPSHLYKDVNDAIRDVHRKGHM--KIESDLEKYI 239 (510)
T ss_pred HhcCccCCCchHHHHHHHhccHHHHHHHHHHHHHHhcccc-----CCHHHHHHhHHHHHHHhhhhhhH--HHhhchHHHh
Confidence 54 4589999999999999999999999887664 88999999999999999999999 8999999999
Q ss_pred ccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCC-CCCcEEeeCCC
Q 006817 325 EPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQM-SHPLYEVVTGE 403 (630)
Q Consensus 325 ~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A~KP~FF~~-~~pf~~v~~~~ 403 (630)
+++|++..+|.+|+.+|||+||||||||+|+|++|+|++| +|||++||||||+|+||.||++ .+|||..|..+
T Consensus 240 ~r~~ql~~fl~kL~~~GKklFLiTNSPysFVd~GM~flvG------~~WRdlFDVVIvqA~KP~Fftde~rPfR~~dek~ 313 (510)
T KOG2470|consen 240 ERNPQLLAFLRKLKDHGKKLFLITNSPYSFVDKGMRFLVG------DDWRDLFDVVIVQANKPEFFTDERRPFRKYDEKR 313 (510)
T ss_pred hccHHHHHHHHHHHHhcCcEEEEeCCchhhhhcCceeeeC------ccHHhhhheeEEecCCCcccccccCcchhhcccc
Confidence 9999999999999999999999999999999999999995 8999999999999999999996 56999999888
Q ss_pred Cccc--ccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhccccccCceEEeehHhhHHHHHHHhhchHHHH
Q 006817 404 GLMR--PCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICRELEEEYNALINSRGQRA 481 (630)
Q Consensus 404 g~l~--~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDI~~sKk~~gWRT~aIVpELe~Ei~i~~~~~~~~~ 481 (630)
|.+. .+.+++||+||.+||+.+|.+++||+|++|||||||+|||++++...+||||+|||||||+||+++ |.++++.
T Consensus 314 ~sl~wdkv~klekgkiYy~G~l~~flelt~WrG~~VlYFGDHlySDLad~tlkhgWRTgAII~EL~~Eiki~-N~e~y~~ 392 (510)
T KOG2470|consen 314 GSLLWDKVDKLEKGKIYYQGNLKSFLELTGWRGPRVLYFGDHLYSDLADLTLKHGWRTGAIIPELEREIKIQ-NTEQYRF 392 (510)
T ss_pred cchhhhhhhhcccCceeeeccHHHHHHHhccCCCeeEEecCcchhhhhhhHhhcccccccchHHHHHHHhhc-cHHHHHH
Confidence 8765 578999999999999999999999999999999999999999999999999999999999999996 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhhhhccccChHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccccc
Q 006817 482 RLVELINQKEVVGDLFNQLRLSLQRRNRGHPAQTLAATNMDDQELTESMQKLLVVMQRLDQKIAPMLESDGELFNKRWGF 561 (630)
Q Consensus 482 ~l~~L~~~~~~l~d~~~~l~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~~~~~lFN~~fGs 561 (630)
+..|+..+..+|++... | .++.+|++.. ++|++ ++ .+++.+|++||.+|||
T Consensus 393 s~~w~q~lt~Ller~q~------~---rseasq~~L~---------ew~~e----Rq-------~lR~~tK~~FN~qFGs 443 (510)
T KOG2470|consen 393 SQTWLQILTGLLERMQA------Q---RSEASQSVLD---------EWMKE----RQ-------ELRDTTKQMFNAQFGS 443 (510)
T ss_pred HHHHHHHHHHHHHHHHh------h---hhHHHHHHHH---------HHHHH----HH-------HHHHHHHHHHHHhhcc
Confidence 99998666666665421 1 1222333222 22221 11 1334678999999999
Q ss_pred ccccCCCCCChhhhhhcccchhhcccccccccCCCCcccccCCcCCCCCcccc
Q 006817 562 LSRAGLWDKSHLMRQIEKYADIYTSRVSNFLHYTPFMYFRSQEQTLAHDSYSY 614 (630)
Q Consensus 562 lfRtg~~~~S~Fa~Qv~RyADLYtS~vsNLL~Ysp~~~Fr~~r~~lpHE~~~~ 614 (630)
+|||.+ |||||+|++.||||||||+++|||+|++.|+|||+|++||||.|+|
T Consensus 444 ~FrT~~-nptyFsrrl~rfaDiYts~lsnlL~y~~~htfYprr~~mpHe~~~~ 495 (510)
T KOG2470|consen 444 TFRTDH-NPTYFSRRLHRFADIYTSSLSNLLNYRVEHTFYPRRTPMPHEVPVW 495 (510)
T ss_pred eeeccC-CccHHHHHHHHHHHHHhccHHHHHhcCcccccCCcCCCCccccccc
Confidence 999985 8999999999999999999999999999999999999999999999
No 3
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=100.00 E-value=1e-105 Score=846.22 Aligned_cols=337 Identities=44% Similarity=0.724 Sum_probs=318.4
Q ss_pred eEecCccccCCccEEEEecccceeeeCccchHHHHHHHHHHHHhh-cCCCCCC--CCCCccccccceEeecCCCcEEeec
Q 006817 143 IFCSRTLNLRSISAIGYDMDYTLMHYNVMAWEGRAYDYCMVNLRN-MGFPVEG--LAFDPDLVIRGLVIDKEKGNLVKAD 219 (630)
Q Consensus 143 IF~Nr~L~L~~I~~iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~-~gYP~~~--L~yDp~F~iRGLv~D~~~GnLLKvD 219 (630)
|||||+|+|++|+|||||||||||+|+++++|.|||++++++||+ +|||+++ ++|||+|+||||++|+++|||||+|
T Consensus 1 if~nr~l~l~~i~~~GFDmDyTLa~Y~~~~~e~L~y~~~~~~LV~~~gYp~~l~~~~~d~~f~iRGL~~D~~~GnllKld 80 (343)
T TIGR02244 1 VFVNRELNLEKIQVFGFDMDYTLAQYKSPELEALIYDLAKERLVKRFGYPEELLSFAYDPTFAIRGLVFDKLKGNLLKLD 80 (343)
T ss_pred CeeCCccccccCCEEEECccccccccChHHHHHHHHHHHHHHHHHhcCCChHHhCCcCCCcccccceeeEcccCeEEEEc
Confidence 899999999999999999999999999999999999999999996 7999775 5799999999999999999999999
Q ss_pred CCCcEEEEeeccccccHhHHHHHhcCeeccccccccchhhhhhhchhHHHHHHHHHHhhhcCCCCCCCCCCChHHHHHHH
Q 006817 220 RFGYVKRAMHGTTMLSNRAVSEMYGRELVDLRKESRWEFLNTLFSVSEAVAYMQMVNRLDEGAIGPELGPLDYKGLYKAV 299 (630)
Q Consensus 220 ~~g~I~~a~HG~~~Ls~eEi~e~Yg~~~i~~~~~~r~~~l~tlFslpEa~L~a~lVd~~d~~~~~~~l~~~~y~~L~~DV 299 (630)
++|+|++|+||+++|+.+||.++||+++++..+.++|.++||+|||||||||||+||++|+... +++ +++|.+||+||
T Consensus 81 ~~g~I~~~~hG~~~l~~~e~~~~Y~~~~~~~~~~~~~~~l~tlF~lpe~~L~a~lvd~~~~~~~-~~~-~~~~~~~~~dv 158 (343)
T TIGR02244 81 RFGNILRGYHGLRPLSDKEVQEIYGNKYISRSNGDRYYLLDTLFSLPEACLIAQLVDYFDDHPK-GPL-AFDYRQIYQDV 158 (343)
T ss_pred CCCcEEEEecCCccCCHHHHHHHcCccccCCCCCccEEEecccccchHHHHHHHHHHHHhcccc-CCC-CCCHHHHHHHH
Confidence 9999999999999999999999999999988776799999999999999999999999997642 122 37999999999
Q ss_pred HHHHHhccchhhhHHHHHcCcccccccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccE
Q 006817 300 GKALFRAHVEGQLKSEIMSKPELFVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNM 379 (630)
Q Consensus 300 ~~Av~~vH~~G~lk~~v~~npekYI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDv 379 (630)
++||++||.+|.||++|++||++||+++|.++.+|.+|+++|||+||+|||+++|++.+|+|++|+++ ++++|++|||+
T Consensus 159 ~~av~~~h~~g~lk~~v~~dp~~yv~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g~~~-~~~~w~~yFD~ 237 (343)
T TIGR02244 159 RDALDWVHRKGSLKKKVMENPEKYVLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLGPFL-GEHDWRDYFDV 237 (343)
T ss_pred HHHHHHhcccchHHHHHHHCHHHHhccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhCCcc-cccchHhhCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999987666 67899999999
Q ss_pred EEEccCCCCCCCCCCCcEEeeCCCCcccccc--cCCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhccccccCc
Q 006817 380 VIVSARKPEFFQMSHPLYEVVTGEGLMRPCF--KARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRW 457 (630)
Q Consensus 380 VIv~A~KP~FF~~~~pf~~v~~~~g~l~~~~--~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDI~~sKk~~gW 457 (630)
||++|+||+||++++|||+|++++|.+++.. .+++|+||+|||+.+|++++||++++|||||||||+||+.+||.+||
T Consensus 238 IIt~a~KP~FF~~~~pf~~v~~~~g~~~~~~~~~l~~g~vY~gGn~~~~~~~l~~~~~~vlYvGD~i~~Di~~~kk~~Gw 317 (343)
T TIGR02244 238 VIVDARKPGFFTEGRPFRQVDVETGSLKWGEVDGLEPGKVYSGGSLKQFHELLKWRGKEVLYFGDHIYGDLLRSKKKRGW 317 (343)
T ss_pred EEeCCCCCcccCCCCceEEEeCCCCcccCCccccccCCCeEeCCCHHHHHHHHCCCCCcEEEECCcchHHHHhhHHhcCc
Confidence 9999999999999999999999999887543 38999999999999999999999999999999999999999999999
Q ss_pred eEEeehHhhHHHHHHHhhchHHHHH
Q 006817 458 RTALICRELEEEYNALINSRGQRAR 482 (630)
Q Consensus 458 RT~aIVpELe~Ei~i~~~~~~~~~~ 482 (630)
||++|+||||+|+++|+++.+++++
T Consensus 318 ~TvlI~pEL~~E~~~~~~~~~~~~~ 342 (343)
T TIGR02244 318 RTAAIIPELEQEVGILTNSKSLREE 342 (343)
T ss_pred EEEEEchhHHHHHHHHhhchhhhhc
Confidence 9999999999999999888776543
No 4
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.8e-103 Score=827.80 Aligned_cols=412 Identities=44% Similarity=0.706 Sum_probs=378.2
Q ss_pred CCCCCCCeeEecCccccCCccEEEEecccceeeeCccchHHHHHHHHHHHHhhcCCCCCCC--CCCccccccceEeecCC
Q 006817 135 SARNSPRGIFCSRTLNLRSISAIGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMGFPVEGL--AFDPDLVIRGLVIDKEK 212 (630)
Q Consensus 135 ~~~~~~~~IF~Nr~L~L~~I~~iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~~gYP~~~L--~yDp~F~iRGLv~D~~~ 212 (630)
..+..+++|||||+|+|++|.+|||||||||++|+.+++|.|||+++.+.|++.|||.+++ .|||+|++|||++|.++
T Consensus 8 ~~r~~~~~if~~rsl~l~~i~~~GfdmDyTL~~Y~~~~~esLay~~~~~~l~~~Gyp~~ll~~~~d~~f~~rGL~ld~~~ 87 (424)
T KOG2469|consen 8 DGRDVPHRIFCNRSLNLENIGIVGFDMDYTLARYNLPEMESLAYDLAQFLLKDKGYPNELLSTSFDWNFPCRGLVLDKER 87 (424)
T ss_pred cccccchheehhhhhhhhcCcEEeeccccchhhhcccchHHHHHHHHHHHHHhcCChhhhhccccCccceeeeeEEeccC
Confidence 3567788899999999999999999999999999999999999997777788999997654 69999999999999999
Q ss_pred CcEEeecCCCcEEEEeeccccccHhHHHHHhcCeeccccccccchhhhhhhchhHHHHHHHHHHhhhcCCCCCCCCCCCh
Q 006817 213 GNLVKADRFGYVKRAMHGTTMLSNRAVSEMYGRELVDLRKESRWEFLNTLFSVSEAVAYMQMVNRLDEGAIGPELGPLDY 292 (630)
Q Consensus 213 GnLLKvD~~g~I~~a~HG~~~Ls~eEi~e~Yg~~~i~~~~~~r~~~l~tlFslpEa~L~a~lVd~~d~~~~~~~l~~~~y 292 (630)
||++|+|++|+|++|+||+++++.+|+.|+||++.+++.+ ++|+.++|+|++||+.++||+||++|.+...+... ++|
T Consensus 88 GN~lKld~~~~vl~a~hg~rfls~~~~~eiyg~~~~~~~~-~~~~~l~t~F~~~ea~~~aq~vd~~d~~~~~~~~~-~dy 165 (424)
T KOG2469|consen 88 GNLLKLDRFGYVLRAAHGTRFLSNEEISEIYGRKLVRLSD-SRYYLLNTLFSMPEADLFAQAVDFLDNGPEYGPVD-MDY 165 (424)
T ss_pred CceeeeeccCceeeeccccccccccchhhhcccccccccC-chhhhhhhhhhchhHHHHHhhcchhhcCCccCccc-hhh
Confidence 9999999999999999999999999999999999999988 89999999999999999999999999998876554 899
Q ss_pred HHHHHHHHHHHHhccchhhhHHHHHcCcccccccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCC
Q 006817 293 KGLYKAVGKALFRAHVEGQLKSEIMSKPELFVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMG 372 (630)
Q Consensus 293 ~~L~~DV~~Av~~vH~~G~lk~~v~~npekYI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~d 372 (630)
+.+|+||++|+++||.+|.+|++++++|||||++++.++++|.++|++|||+||+|||.|+|||.+|++++| .|
T Consensus 166 k~~~~~v~~~~~~~h~~~~lk~~~~~~pek~V~~d~~~v~~l~~~r~sGKk~fl~Tns~~~ytd~~mt~~~~------~d 239 (424)
T KOG2469|consen 166 KPGWKDVRAAGNAVHLYGLLKKKMMGKPERYVVYDGTIVPLLSMLRDSGKKTFLHTNSDWDYTDIFMAFHYG------FD 239 (424)
T ss_pred cchHHHHHHHHhHHHHHHHHHHHHhcCCCceeeecCccccchHHHHhhccceEEeeccccchhhHHHHHHhC------CC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999995 79
Q ss_pred CCCCccEEEEccCCCCCCCCCCCcEEeeCCCCcccc---cccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchh
Q 006817 373 WRDLFNMVIVSARKPEFFQMSHPLYEVVTGEGLMRP---CFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVS 449 (630)
Q Consensus 373 Wrd~FDvVIv~A~KP~FF~~~~pf~~v~~~~g~l~~---~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDI~ 449 (630)
|+.|||+|||.|+||+||.+++++|+|++++|++++ +.++++|++|+||+++.++.+++.+|++|||+|||||+||+
T Consensus 240 W~~yfd~v~~~a~Kp~ff~e~~vlreV~t~~g~l~~g~~~~p~e~~~~ySggs~~~~~~~l~~~g~diLy~gdHi~~dvl 319 (424)
T KOG2469|consen 240 WETYFDLVETRAAKPGFFHEGTVLREVEPQEGLLKNGDNTGPLEQGGVYSGGSLKTVETSMKVKGKDILYGGDHIWGDVL 319 (424)
T ss_pred cceeEEEEEEeccCCccccccceeeeeccccccccccccCCcchhcccCCcchHHHHHHHhcccccceeecccceeeeEE
Confidence 999999999999999999999999999999999886 56789999999999999999999999999999999999999
Q ss_pred ccccccCceEEeehHhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhhhhccccChHHHHHH
Q 006817 450 QSKVHLRWRTALICRELEEEYNALINSRGQRARLVELINQKEVVGDLFNQLRLSLQRRNRGHPAQTLAATNMDDQELTES 529 (630)
Q Consensus 450 ~sKk~~gWRT~aIVpELe~Ei~i~~~~~~~~~~l~~L~~~~~~l~d~~~~l~~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 529 (630)
.|||+.||||++|||||+.|..+|..++ +.+.++++....++|+|++++.++++.....+ ...+++++++.
T Consensus 320 ~skk~~~wrt~lv~peL~~e~~v~~~~k---e~~~el~~~~~~laDiy~~l~~s~~s~~~~~~------~~r~~~~~~~~ 390 (424)
T KOG2469|consen 320 VSKKRRGWRTVLVAPELEREDLVLLDSK---EEFIELLNWSSKLADIYPNLDLSLLSAPKDLS------IKRDIQKLTEC 390 (424)
T ss_pred ecceecceEEEEEehhhhhhhhhhccch---HHHHHHhccchhhHhhccCCchhhhhcccccc------hhHHHHHHHHh
Confidence 9999999999999999999999998776 35777888899999999999887666533332 22233333332
Q ss_pred HHHHHHHHHHHHhhhhhhhhhcccccccccccccccCCCCCChhhhhhcccchhhcc
Q 006817 530 MQKLLVVMQRLDQKIAPMLESDGELFNKRWGFLSRAGLWDKSHLMRQIEKYADIYTS 586 (630)
Q Consensus 530 ~~~l~~~~~~~d~~~~~~~~~~~~lFN~~fGslfRtg~~~~S~Fa~Qv~RyADLYtS 586 (630)
| ..|+-.|||+||||+ +.|.||.|++||||||||
T Consensus 391 ~----------------------dk~~~~~~sl~~s~~-~~t~~a~q~~r~A~~y~s 424 (424)
T KOG2469|consen 391 M----------------------DKFYGVWGSLFRTGY-QRTRFALQVERYADLYTS 424 (424)
T ss_pred H----------------------HHHhcchHHhhcccc-ccchHHHHHHHHHHHhcC
Confidence 2 346668999999997 999999999999999997
No 5
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=99.10 E-value=9e-10 Score=107.84 Aligned_cols=106 Identities=25% Similarity=0.374 Sum_probs=82.3
Q ss_pred cccccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeeC
Q 006817 322 LFVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVT 401 (630)
Q Consensus 322 kYI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A~KP~FF~~~~pf~~v~~ 401 (630)
.++...|.+..+|.+|+++|.++.++||++-.++...++.+ +|.+|||.|++....
T Consensus 91 ~~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~---------~l~~~f~~i~~~~~~--------------- 146 (221)
T TIGR02253 91 AYLRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERL---------GVRDFFDAVITSEEE--------------- 146 (221)
T ss_pred HhCCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhC---------ChHHhccEEEEeccC---------------
Confidence 35667889999999999999999999999998888887754 499999999875421
Q ss_pred CCCcccccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhccccccCceEEeehH
Q 006817 402 GEGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICR 464 (630)
Q Consensus 402 ~~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDI~~sKk~~gWRT~aIVp 464 (630)
|..+| ...+ .....+.+|...++++||||++..||..+++ .||+|++|-.
T Consensus 147 --~~~KP-----~~~~-----~~~~~~~~~~~~~~~~~igDs~~~di~~A~~-aG~~~i~~~~ 196 (221)
T TIGR02253 147 --GVEKP-----HPKI-----FYAALKRLGVKPEEAVMVGDRLDKDIKGAKN-LGMKTVWINQ 196 (221)
T ss_pred --CCCCC-----CHHH-----HHHHHHHcCCChhhEEEECCChHHHHHHHHH-CCCEEEEECC
Confidence 11111 0112 3456667788889999999999999998886 5999999853
No 6
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=98.85 E-value=6e-08 Score=97.87 Aligned_cols=102 Identities=15% Similarity=0.131 Sum_probs=75.4
Q ss_pred cccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCc-cEEEEccCCCCCCCCCCCcEEeeCC
Q 006817 324 VEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLF-NMVIVSARKPEFFQMSHPLYEVVTG 402 (630)
Q Consensus 324 I~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~F-DvVIv~A~KP~FF~~~~pf~~v~~~ 402 (630)
+..-|.+..+|..|+++|.++.++||++-..++.+++.+ .+.++| |.||+...-+
T Consensus 98 ~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~---------gl~~~f~d~ii~~~~~~--------------- 153 (253)
T TIGR01422 98 SSPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEA---------ALQGYRPDYNVTTDDVP--------------- 153 (253)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHH---------HhcCCCCceEEccccCC---------------
Confidence 455688999999999999999999999999999988765 266775 8887643210
Q ss_pred CCcccccccCCCCccccCCCHHHHHHHhCCC-CCcEEEEcCccccchhccccccCceEEeeh
Q 006817 403 EGLMRPCFKARTGGLYSGGSAQMIENSLNIH-GDEILYVGDHIYTDVSQSKVHLRWRTALIC 463 (630)
Q Consensus 403 ~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~-G~~VLYfGDHIygDI~~sKk~~gWRT~aIV 463 (630)
.-+| ...+| ....+.+|.. ..+++||||.+ .||..++. .|++|++|.
T Consensus 154 --~~KP-----~p~~~-----~~a~~~l~~~~~~~~l~IGDs~-~Di~aA~~-aGi~~i~v~ 201 (253)
T TIGR01422 154 --AGRP-----APWMA-----LKNAIELGVYDVAACVKVGDTV-PDIEEGRN-AGMWTVGLI 201 (253)
T ss_pred --CCCC-----CHHHH-----HHHHHHcCCCCchheEEECCcH-HHHHHHHH-CCCeEEEEe
Confidence 0011 01222 2345556764 67899999998 99998875 699999995
No 7
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=98.77 E-value=1.3e-07 Score=92.94 Aligned_cols=102 Identities=22% Similarity=0.223 Sum_probs=77.1
Q ss_pred cccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeeCCC
Q 006817 324 VEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGE 403 (630)
Q Consensus 324 I~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A~KP~FF~~~~pf~~v~~~~ 403 (630)
+..-|....+|..|+++|.++.++||+.-.++...+..+ +|.+|||.|++....+ .
T Consensus 81 ~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~---------gl~~~f~~i~~~~~~~---------------~ 136 (214)
T PRK13288 81 VTEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLT---------GLDEFFDVVITLDDVE---------------H 136 (214)
T ss_pred cccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc---------CChhceeEEEecCcCC---------------C
Confidence 334588999999999999999999999999999888765 4899999998632210 0
Q ss_pred CcccccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhccccccCceEEeeh
Q 006817 404 GLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 463 (630)
Q Consensus 404 g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDI~~sKk~~gWRT~aIV 463 (630)
+ +| ++.+ ...+.+.+|...++++||||+. .||..++. .|+++++|-
T Consensus 137 ~--Kp-----~p~~-----~~~~~~~~~~~~~~~~~iGDs~-~Di~aa~~-aG~~~i~v~ 182 (214)
T PRK13288 137 A--KP-----DPEP-----VLKALELLGAKPEEALMVGDNH-HDILAGKN-AGTKTAGVA 182 (214)
T ss_pred C--CC-----CcHH-----HHHHHHHcCCCHHHEEEECCCH-HHHHHHHH-CCCeEEEEc
Confidence 0 00 1122 2345666788888999999997 89998876 599999884
No 8
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=98.72 E-value=1.7e-07 Score=96.56 Aligned_cols=101 Identities=11% Similarity=0.216 Sum_probs=78.4
Q ss_pred ccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeeCCCC
Q 006817 325 EPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEG 404 (630)
Q Consensus 325 ~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A~KP~FF~~~~pf~~v~~~~g 404 (630)
..-|.+..+|..|+++|.++.++||++..++..++.++ .|.+|||.||+...-. .+
T Consensus 109 ~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~---------gl~~~Fd~ii~~~d~~---------------~~ 164 (260)
T PLN03243 109 RLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAV---------GMEGFFSVVLAAEDVY---------------RG 164 (260)
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHc---------CCHhhCcEEEecccCC---------------CC
Confidence 34678999999999999999999999999999999876 3999999999763210 00
Q ss_pred cccccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhccccccCceEEeeh
Q 006817 405 LMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 463 (630)
Q Consensus 405 ~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDI~~sKk~~gWRT~aIV 463 (630)
+| ...+| ....+.+|....+++||||.. .||..++. .||+|++|-
T Consensus 165 --KP-----~Pe~~-----~~a~~~l~~~p~~~l~IgDs~-~Di~aA~~-aG~~~i~v~ 209 (260)
T PLN03243 165 --KP-----DPEMF-----MYAAERLGFIPERCIVFGNSN-SSVEAAHD-GCMKCVAVA 209 (260)
T ss_pred --CC-----CHHHH-----HHHHHHhCCChHHeEEEcCCH-HHHHHHHH-cCCEEEEEe
Confidence 11 01233 355667788889999999995 68887775 699999885
No 9
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=98.67 E-value=3.5e-07 Score=91.51 Aligned_cols=103 Identities=14% Similarity=0.138 Sum_probs=77.6
Q ss_pred ccccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeeCC
Q 006817 323 FVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTG 402 (630)
Q Consensus 323 YI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A~KP~FF~~~~pf~~v~~~ 402 (630)
++..-|....+|..|++.|.++.++||++-.++..+++.+ .|.++||+|++.-..
T Consensus 93 ~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~---------~l~~~f~~i~~~~~~---------------- 147 (229)
T PRK13226 93 QSQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQL---------GWEQRCAVLIGGDTL---------------- 147 (229)
T ss_pred cCeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc---------CchhcccEEEecCcC----------------
Confidence 4556689999999999999999999999998888877754 489999998765321
Q ss_pred CCcccccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhccccccCceEEeeh
Q 006817 403 EGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 463 (630)
Q Consensus 403 ~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDI~~sKk~~gWRT~aIV 463 (630)
+..+| . ..+ .....+.+|....+++||||+. .||...+. .||+|++|.
T Consensus 148 -~~~KP----~-p~~-----~~~~~~~l~~~p~~~l~IGDs~-~Di~aA~~-aG~~~i~v~ 195 (229)
T PRK13226 148 -AERKP----H-PLP-----LLVAAERIGVAPTDCVYVGDDE-RDILAARA-AGMPSVAAL 195 (229)
T ss_pred -CCCCC----C-HHH-----HHHHHHHhCCChhhEEEeCCCH-HHHHHHHH-CCCcEEEEe
Confidence 10111 0 111 2356677788889999999995 89887764 699999984
No 10
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=98.66 E-value=6.5e-07 Score=91.49 Aligned_cols=103 Identities=13% Similarity=0.049 Sum_probs=73.7
Q ss_pred cccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCC-ccEEEEccCCCCCCCCCCCcEEeeCC
Q 006817 324 VEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDL-FNMVIVSARKPEFFQMSHPLYEVVTG 402 (630)
Q Consensus 324 I~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~-FDvVIv~A~KP~FF~~~~pf~~v~~~ 402 (630)
+..-|....+|..|+++|.++.++||+.-..++.++..+ .+.++ ||.||+...-
T Consensus 100 ~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~---------~l~~~~~d~i~~~~~~---------------- 154 (267)
T PRK13478 100 ATPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLA---------AAQGYRPDHVVTTDDV---------------- 154 (267)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHH---------hhcCCCceEEEcCCcC----------------
Confidence 445688999999999999999999999999998888754 14455 4877654321
Q ss_pred CCcccccccCCCCccccCCCHHHHHHHhCCC-CCcEEEEcCccccchhccccccCceEEeehH
Q 006817 403 EGLMRPCFKARTGGLYSGGSAQMIENSLNIH-GDEILYVGDHIYTDVSQSKVHLRWRTALICR 464 (630)
Q Consensus 403 ~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~-G~~VLYfGDHIygDI~~sKk~~gWRT~aIVp 464 (630)
+..+| ...+| ....+.+|.. ..+++||||.. .||..++. .|++|++|..
T Consensus 155 -~~~KP-----~p~~~-----~~a~~~l~~~~~~e~l~IGDs~-~Di~aA~~-aG~~~i~v~~ 204 (267)
T PRK13478 155 -PAGRP-----YPWMA-----LKNAIELGVYDVAACVKVDDTV-PGIEEGLN-AGMWTVGVIL 204 (267)
T ss_pred -CCCCC-----ChHHH-----HHHHHHcCCCCCcceEEEcCcH-HHHHHHHH-CCCEEEEEcc
Confidence 00011 01222 3445556775 47899999998 89998876 6999999964
No 11
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=98.65 E-value=5.6e-07 Score=88.45 Aligned_cols=102 Identities=18% Similarity=0.245 Sum_probs=76.2
Q ss_pred ccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCC--CCccEEEEccCCCCCCCCCCCcEEeeCC
Q 006817 325 EPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWR--DLFNMVIVSARKPEFFQMSHPLYEVVTG 402 (630)
Q Consensus 325 ~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWr--d~FDvVIv~A~KP~FF~~~~pf~~v~~~ 402 (630)
..-|....+|..|+++|.++.++||+.-.++..++..+ .|. ++||.|++...-.
T Consensus 87 ~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~---------~l~~~~~f~~i~~~~~~~--------------- 142 (220)
T TIGR03351 87 VALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKL---------GWTVGDDVDAVVCPSDVA--------------- 142 (220)
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHh---------hhhhhccCCEEEcCCcCC---------------
Confidence 45678899999999999999999999999999999865 266 9999999874421
Q ss_pred CCcccccccCCCCccccCCCHHHHHHHhCCC-CCcEEEEcCccccchhccccccCceE-EeehH
Q 006817 403 EGLMRPCFKARTGGLYSGGSAQMIENSLNIH-GDEILYVGDHIYTDVSQSKVHLRWRT-ALICR 464 (630)
Q Consensus 403 ~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~-G~~VLYfGDHIygDI~~sKk~~gWRT-~aIVp 464 (630)
.+ +| ...+| ....+.+|.. ..+++||||.. .||..++. .||+| ++|..
T Consensus 143 ~~--KP-----~p~~~-----~~a~~~~~~~~~~~~~~igD~~-~Di~aa~~-aG~~~~i~~~~ 192 (220)
T TIGR03351 143 AG--RP-----APDLI-----LRAMELTGVQDVQSVAVAGDTP-NDLEAGIN-AGAGAVVGVLT 192 (220)
T ss_pred CC--CC-----CHHHH-----HHHHHHcCCCChhHeEEeCCCH-HHHHHHHH-CCCCeEEEEec
Confidence 01 11 01121 2344556776 57999999997 79988875 69999 77754
No 12
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=98.60 E-value=1.4e-06 Score=86.21 Aligned_cols=104 Identities=18% Similarity=0.206 Sum_probs=79.6
Q ss_pred cccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeeCCC
Q 006817 324 VEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGE 403 (630)
Q Consensus 324 I~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A~KP~FF~~~~pf~~v~~~~ 403 (630)
...-|.+..+|..|++.|.++.++||+.-..+..+++++ .+.++||.|++...-+ .
T Consensus 91 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~---------~l~~~f~~~~~~~~~~---------------~ 146 (222)
T PRK10826 91 RPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMF---------DLRDYFDALASAEKLP---------------Y 146 (222)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhC---------cchhcccEEEEcccCC---------------C
Confidence 344578999999999999999999999999999998875 3889999988653210 0
Q ss_pred CcccccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhccccccCceEEeehHh
Q 006817 404 GLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICRE 465 (630)
Q Consensus 404 g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDI~~sKk~~gWRT~aIVpE 465 (630)
+ +| ++.+ ...+++.+|....+++||||+. .||...+. .|+++++|-..
T Consensus 147 ~--Kp-----~~~~-----~~~~~~~~~~~~~~~~~igDs~-~Di~aA~~-aG~~~i~v~~~ 194 (222)
T PRK10826 147 S--KP-----HPEV-----YLNCAAKLGVDPLTCVALEDSF-NGMIAAKA-ARMRSIVVPAP 194 (222)
T ss_pred C--CC-----CHHH-----HHHHHHHcCCCHHHeEEEcCCh-hhHHHHHH-cCCEEEEecCC
Confidence 1 00 0112 2456777888888999999998 79998875 69999998643
No 13
>PLN02940 riboflavin kinase
Probab=98.58 E-value=9.8e-07 Score=95.73 Aligned_cols=102 Identities=16% Similarity=0.234 Sum_probs=76.6
Q ss_pred ccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeeCCCC
Q 006817 325 EPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEG 404 (630)
Q Consensus 325 ~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A~KP~FF~~~~pf~~v~~~~g 404 (630)
..-|.+..+|..|+++|.++.++||+.-.+++..+.-.+ .|.++||.|++...- +
T Consensus 93 ~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~--------gl~~~Fd~ii~~d~v-----------------~ 147 (382)
T PLN02940 93 KALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQ--------GWKESFSVIVGGDEV-----------------E 147 (382)
T ss_pred CCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhcc--------ChHhhCCEEEehhhc-----------------C
Confidence 345889999999999999999999999999888776332 399999999885421 0
Q ss_pred cccccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhccccccCceEEeeh
Q 006817 405 LMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 463 (630)
Q Consensus 405 ~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDI~~sKk~~gWRT~aIV 463 (630)
..+| +..+ .....+.+|....++++|||.. .||..++. .|+++++|-
T Consensus 148 ~~KP-----~p~~-----~~~a~~~lgv~p~~~l~VGDs~-~Di~aA~~-aGi~~I~v~ 194 (382)
T PLN02940 148 KGKP-----SPDI-----FLEAAKRLNVEPSNCLVIEDSL-PGVMAGKA-AGMEVIAVP 194 (382)
T ss_pred CCCC-----CHHH-----HHHHHHHcCCChhHEEEEeCCH-HHHHHHHH-cCCEEEEEC
Confidence 0010 0112 2345666788889999999997 59887775 699999985
No 14
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=98.57 E-value=8.9e-07 Score=85.97 Aligned_cols=99 Identities=25% Similarity=0.388 Sum_probs=71.2
Q ss_pred ccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeeCCCC
Q 006817 325 EPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEG 404 (630)
Q Consensus 325 ~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A~KP~FF~~~~pf~~v~~~~g 404 (630)
...|....+|.+|+++|.++.++||++... ...+.. ..|.++||.|++... .|
T Consensus 105 ~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~~-~~~l~~---------~~l~~~fd~i~~s~~-----------------~~ 157 (203)
T TIGR02252 105 QVYPDAIKLLKDLRERGLILGVISNFDSRL-RGLLEA---------LGLLEYFDFVVTSYE-----------------VG 157 (203)
T ss_pred eeCcCHHHHHHHHHHCCCEEEEEeCCchhH-HHHHHH---------CCcHHhcceEEeecc-----------------cC
Confidence 446789999999999999999999998654 444442 248899999987432 11
Q ss_pred cccccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhccccccCceEEe
Q 006817 405 LMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTAL 461 (630)
Q Consensus 405 ~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDI~~sKk~~gWRT~a 461 (630)
..+| . ..+ .....+.+|....+++||||....||..++. .||+|++
T Consensus 158 ~~KP----~-~~~-----~~~~~~~~~~~~~~~~~IgD~~~~Di~~A~~-aG~~~i~ 203 (203)
T TIGR02252 158 AEKP----D-PKI-----FQEALERAGISPEEALHIGDSLRNDYQGARA-AGWRALL 203 (203)
T ss_pred CCCC----C-HHH-----HHHHHHHcCCChhHEEEECCCchHHHHHHHH-cCCeeeC
Confidence 1111 0 112 2345666788889999999999999998865 6999874
No 15
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=98.54 E-value=3.4e-06 Score=82.65 Aligned_cols=102 Identities=21% Similarity=0.310 Sum_probs=76.0
Q ss_pred cccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeeCCC
Q 006817 324 VEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGE 403 (630)
Q Consensus 324 I~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A~KP~FF~~~~pf~~v~~~~ 403 (630)
...-|.+..+|..++++|.++.++||+.-.+...++..+ .|.++||.|++...-
T Consensus 92 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~---------~l~~~f~~~~~~~~~----------------- 145 (226)
T PRK13222 92 SRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEAL---------GIADYFSVVIGGDSL----------------- 145 (226)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc---------CCccCccEEEcCCCC-----------------
Confidence 445688999999999999999999999999998888755 378899987653210
Q ss_pred CcccccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhccccccCceEEeeh
Q 006817 404 GLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 463 (630)
Q Consensus 404 g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDI~~sKk~~gWRT~aIV 463 (630)
+..++ ++. ....+.+.++....+++||||.. .|+...+. .||.|++|.
T Consensus 146 ~~~kp-----~~~-----~~~~~~~~~~~~~~~~i~igD~~-~Di~~a~~-~g~~~i~v~ 193 (226)
T PRK13222 146 PNKKP-----DPA-----PLLLACEKLGLDPEEMLFVGDSR-NDIQAARA-AGCPSVGVT 193 (226)
T ss_pred CCCCc-----ChH-----HHHHHHHHcCCChhheEEECCCH-HHHHHHHH-CCCcEEEEC
Confidence 00000 011 13345666677888999999995 89998876 699999985
No 16
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=98.48 E-value=2.5e-06 Score=81.57 Aligned_cols=93 Identities=10% Similarity=0.161 Sum_probs=67.4
Q ss_pred hHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeeCCCCcccccc
Q 006817 331 PLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEGLMRPCF 410 (630)
Q Consensus 331 ~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A~KP~FF~~~~pf~~v~~~~g~l~~~~ 410 (630)
..+|..|++. .++.++||+.-.+++..++.+ .|.+|||.|++...- +..+|
T Consensus 93 ~e~L~~L~~~-~~l~I~T~~~~~~~~~~l~~~---------~l~~~fd~i~~~~~~-----------------~~~KP-- 143 (188)
T PRK10725 93 IEVVKAWHGR-RPMAVGTGSESAIAEALLAHL---------GLRRYFDAVVAADDV-----------------QHHKP-- 143 (188)
T ss_pred HHHHHHHHhC-CCEEEEcCCchHHHHHHHHhC---------CcHhHceEEEehhhc-----------------cCCCC--
Confidence 5778888765 789999999999999998875 389999998875321 00011
Q ss_pred cCCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhccccccCceEEee
Q 006817 411 KARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALI 462 (630)
Q Consensus 411 ~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDI~~sKk~~gWRT~aI 462 (630)
...+| ....+.+|....+++||||. ..||..++. .||+|++|
T Consensus 144 ---~p~~~-----~~~~~~~~~~~~~~l~igDs-~~di~aA~~-aG~~~i~~ 185 (188)
T PRK10725 144 ---APDTF-----LRCAQLMGVQPTQCVVFEDA-DFGIQAARA-AGMDAVDV 185 (188)
T ss_pred ---ChHHH-----HHHHHHcCCCHHHeEEEecc-HhhHHHHHH-CCCEEEee
Confidence 01111 23455567777899999997 889988875 69999987
No 17
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=98.48 E-value=2.7e-06 Score=88.43 Aligned_cols=101 Identities=15% Similarity=0.218 Sum_probs=78.0
Q ss_pred cccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeeCCC
Q 006817 324 VEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGE 403 (630)
Q Consensus 324 I~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A~KP~FF~~~~pf~~v~~~~ 403 (630)
+..-|....+|..|+++|.++.++||+.-.+++.+++.+ .|.++||.|++....+ +
T Consensus 141 ~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~---------gl~~~F~~vi~~~~~~-------~-------- 196 (273)
T PRK13225 141 LQLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQ---------GLRSLFSVVQAGTPIL-------S-------- 196 (273)
T ss_pred CCcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc---------CChhheEEEEecCCCC-------C--------
Confidence 455688999999999999999999999999999999865 3899999887542110 0
Q ss_pred CcccccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhccccccCceEEeehHh
Q 006817 404 GLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICRE 465 (630)
Q Consensus 404 g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDI~~sKk~~gWRT~aIVpE 465 (630)
+..+ ...+++.++....+++||||.+ .||..++. .||+|++|...
T Consensus 197 ----------k~~~-----~~~~l~~~~~~p~~~l~IGDs~-~Di~aA~~-AG~~~I~v~~g 241 (273)
T PRK13225 197 ----------KRRA-----LSQLVAREGWQPAAVMYVGDET-RDVEAARQ-VGLIAVAVTWG 241 (273)
T ss_pred ----------CHHH-----HHHHHHHhCcChhHEEEECCCH-HHHHHHHH-CCCeEEEEecC
Confidence 0111 2345566678888999999996 69998876 79999998543
No 18
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=98.42 E-value=2.6e-06 Score=83.35 Aligned_cols=100 Identities=21% Similarity=0.254 Sum_probs=70.7
Q ss_pred ccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEcc----CCCCCCCCCCCcEEee
Q 006817 325 EPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSA----RKPEFFQMSHPLYEVV 400 (630)
Q Consensus 325 ~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A----~KP~FF~~~~pf~~v~ 400 (630)
...|.+..+|..|+++|.++.++||+............ ...+.++||.|++.. +||.
T Consensus 94 ~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~-------~~~l~~~fd~v~~s~~~~~~KP~------------ 154 (211)
T TIGR02247 94 KLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALL-------PGDIMALFDAVVESCLEGLRKPD------------ 154 (211)
T ss_pred ccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhh-------hhhhHhhCCEEEEeeecCCCCCC------------
Confidence 34578899999999999999999999765432222111 124889999998542 3331
Q ss_pred CCCCcccccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhccccccCceEEeehH
Q 006817 401 TGEGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICR 464 (630)
Q Consensus 401 ~~~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDI~~sKk~~gWRT~aIVp 464 (630)
..+| ...++.+|....+++||||. ..||..++. .||.|++|.+
T Consensus 155 --------------p~~~-----~~~~~~~g~~~~~~l~i~D~-~~di~aA~~-aG~~~i~v~~ 197 (211)
T TIGR02247 155 --------------PRIY-----QLMLERLGVAPEECVFLDDL-GSNLKPAAA-LGITTIKVSD 197 (211)
T ss_pred --------------HHHH-----HHHHHHcCCCHHHeEEEcCC-HHHHHHHHH-cCCEEEEECC
Confidence 1222 35566778888999999875 668888875 6999999863
No 19
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=98.40 E-value=5.8e-06 Score=90.08 Aligned_cols=101 Identities=11% Similarity=0.169 Sum_probs=77.3
Q ss_pred cCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeeCCCCc
Q 006817 326 PDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEGL 405 (630)
Q Consensus 326 kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A~KP~FF~~~~pf~~v~~~~g~ 405 (630)
.-|....+|..|+++|.++.++||++-.+++..+..+ .|.+|||.||+..... .+
T Consensus 217 l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~l---------gL~~yFd~Iv~sddv~---------------~~- 271 (381)
T PLN02575 217 LRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSI---------GIRGFFSVIVAAEDVY---------------RG- 271 (381)
T ss_pred cCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc---------CCHHHceEEEecCcCC---------------CC-
Confidence 3478899999999999999999999999999998865 3899999998864321 00
Q ss_pred ccccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhccccccCceEEeehH
Q 006817 406 MRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICR 464 (630)
Q Consensus 406 l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDI~~sKk~~gWRT~aIVp 464 (630)
+| ...+| ....+.+|...++++||||.. .||..++. .||++++|..
T Consensus 272 -KP-----~Peif-----l~A~~~lgl~Peecl~IGDS~-~DIeAAk~-AGm~~IgV~~ 317 (381)
T PLN02575 272 -KP-----DPEMF-----IYAAQLLNFIPERCIVFGNSN-QTVEAAHD-ARMKCVAVAS 317 (381)
T ss_pred -CC-----CHHHH-----HHHHHHcCCCcccEEEEcCCH-HHHHHHHH-cCCEEEEECC
Confidence 00 01122 234566788889999999987 58877764 6999999974
No 20
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=98.39 E-value=7.2e-06 Score=80.80 Aligned_cols=96 Identities=14% Similarity=0.178 Sum_probs=70.0
Q ss_pred ccccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCcc-EEEEcc----CCCCCCCCCCCcE
Q 006817 323 FVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFN-MVIVSA----RKPEFFQMSHPLY 397 (630)
Q Consensus 323 YI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FD-vVIv~A----~KP~FF~~~~pf~ 397 (630)
.+...|.+..+|..| +.++.++||++-.+++..+... +..++|| +|++.- .||
T Consensus 86 ~~~~~~gv~~~L~~L---~~~~~ivTn~~~~~~~~~l~~~---------~l~~~F~~~v~~~~~~~~~KP---------- 143 (221)
T PRK10563 86 ELEPIAGANALLESI---TVPMCVVSNGPVSKMQHSLGKT---------GMLHYFPDKLFSGYDIQRWKP---------- 143 (221)
T ss_pred cCCcCCCHHHHHHHc---CCCEEEEeCCcHHHHHHHHHhc---------ChHHhCcceEeeHHhcCCCCC----------
Confidence 455568888899888 4789999999999998887644 4788996 555432 222
Q ss_pred EeeCCCCcccccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhccccccCceEEeeh
Q 006817 398 EVVTGEGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 463 (630)
Q Consensus 398 ~v~~~~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDI~~sKk~~gWRT~aIV 463 (630)
+..+| ....+.+|....+++||||.. .||..++ ..|++|+++.
T Consensus 144 ----------------~p~~~-----~~a~~~~~~~p~~~l~igDs~-~di~aA~-~aG~~~i~~~ 186 (221)
T PRK10563 144 ----------------DPALM-----FHAAEAMNVNVENCILVDDSS-AGAQSGI-AAGMEVFYFC 186 (221)
T ss_pred ----------------ChHHH-----HHHHHHcCCCHHHeEEEeCcH-hhHHHHH-HCCCEEEEEC
Confidence 01222 244566788788999999998 6988776 4799999875
No 21
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=98.34 E-value=1.3e-05 Score=82.79 Aligned_cols=102 Identities=18% Similarity=0.221 Sum_probs=76.5
Q ss_pred cccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeeCCC
Q 006817 324 VEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGE 403 (630)
Q Consensus 324 I~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A~KP~FF~~~~pf~~v~~~~ 403 (630)
...-|.+..+|..|+++|.++.++||++-.+...++..+ .|..+||.|++...-
T Consensus 100 ~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~---------~i~~~f~~i~~~d~~----------------- 153 (272)
T PRK13223 100 TVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQM---------KIGRYFRWIIGGDTL----------------- 153 (272)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHc---------CcHhhCeEEEecCCC-----------------
Confidence 344588999999999999999999999998888877754 378899987664210
Q ss_pred CcccccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhccccccCceEEeeh
Q 006817 404 GLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 463 (630)
Q Consensus 404 g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDI~~sKk~~gWRT~aIV 463 (630)
+..++ + ..-...+.+.+|....+++||||+ ..||...+. .||+|++|.
T Consensus 154 ~~~Kp-----~-----p~~~~~~~~~~g~~~~~~l~IGD~-~~Di~aA~~-aGi~~i~v~ 201 (272)
T PRK13223 154 PQKKP-----D-----PAALLFVMKMAGVPPSQSLFVGDS-RSDVLAAKA-AGVQCVALS 201 (272)
T ss_pred CCCCC-----C-----cHHHHHHHHHhCCChhHEEEECCC-HHHHHHHHH-CCCeEEEEe
Confidence 00010 0 112335666778888999999999 699998876 699999985
No 22
>PRK11587 putative phosphatase; Provisional
Probab=98.33 E-value=1.9e-05 Score=78.24 Aligned_cols=97 Identities=13% Similarity=0.126 Sum_probs=69.4
Q ss_pred cccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEcc----CCCCCCCCCCCcEEe
Q 006817 324 VEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSA----RKPEFFQMSHPLYEV 399 (630)
Q Consensus 324 I~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A----~KP~FF~~~~pf~~v 399 (630)
+..-|....+|..|+++|.++.++||+....+....... .+ .+||.|++.. .||
T Consensus 82 ~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~---------~l-~~~~~i~~~~~~~~~KP------------ 139 (218)
T PRK11587 82 ITALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAA---------GL-PAPEVFVTAERVKRGKP------------ 139 (218)
T ss_pred ceeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhc---------CC-CCccEEEEHHHhcCCCC------------
Confidence 344688999999999999999999999988876665532 13 4577766531 122
Q ss_pred eCCCCcccccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhccccccCceEEeeh
Q 006817 400 VTGEGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 463 (630)
Q Consensus 400 ~~~~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDI~~sKk~~gWRT~aIV 463 (630)
...+| ....+.+|....+++||||+. .||..++. .|+.|++|-
T Consensus 140 --------------~p~~~-----~~~~~~~g~~p~~~l~igDs~-~di~aA~~-aG~~~i~v~ 182 (218)
T PRK11587 140 --------------EPDAY-----LLGAQLLGLAPQECVVVEDAP-AGVLSGLA-AGCHVIAVN 182 (218)
T ss_pred --------------CcHHH-----HHHHHHcCCCcccEEEEecch-hhhHHHHH-CCCEEEEEC
Confidence 01122 234556788889999999995 68877764 699999984
No 23
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=98.31 E-value=1.2e-06 Score=80.65 Aligned_cols=104 Identities=25% Similarity=0.370 Sum_probs=83.1
Q ss_pred ccccccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEee
Q 006817 321 ELFVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVV 400 (630)
Q Consensus 321 ekYI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A~KP~FF~~~~pf~~v~ 400 (630)
...+...|.+..+|.+|+++|.++.++||.+-..+...++.+ .|.++||.|++....+.
T Consensus 73 ~~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~---------~~~~~f~~i~~~~~~~~------------ 131 (176)
T PF13419_consen 73 ESKLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERL---------GLDDYFDEIISSDDVGS------------ 131 (176)
T ss_dssp HGGEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHT---------THGGGCSEEEEGGGSSS------------
T ss_pred hhccchhhhhhhhhhhcccccceeEEeecCCccccccccccc---------ccccccccccccchhhh------------
Confidence 367788999999999999999999999999999998888876 37799999998754321
Q ss_pred CCCCcccccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhccccccCceEEee
Q 006817 401 TGEGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALI 462 (630)
Q Consensus 401 ~~~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDI~~sKk~~gWRT~aI 462 (630)
.+| ...+ ...+.+-+|...+++++|||+. .||..++. .||+|+.|
T Consensus 132 -----~Kp-----~~~~-----~~~~~~~~~~~p~~~~~vgD~~-~d~~~A~~-~G~~~i~v 176 (176)
T PF13419_consen 132 -----RKP-----DPDA-----YRRALEKLGIPPEEILFVGDSP-SDVEAAKE-AGIKTIWV 176 (176)
T ss_dssp -----STT-----SHHH-----HHHHHHHHTSSGGGEEEEESSH-HHHHHHHH-TTSEEEEE
T ss_pred -----hhh-----HHHH-----HHHHHHHcCCCcceEEEEeCCH-HHHHHHHH-cCCeEEeC
Confidence 111 0122 3456666799999999999999 99998875 69999986
No 24
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=98.28 E-value=1.3e-05 Score=78.61 Aligned_cols=107 Identities=23% Similarity=0.369 Sum_probs=80.5
Q ss_pred ccccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeeCC
Q 006817 323 FVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTG 402 (630)
Q Consensus 323 YI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A~KP~FF~~~~pf~~v~~~ 402 (630)
.+..-|++...|.++++. .+|.++||..-........-+ | ..++||.|++....
T Consensus 97 ~~~~~~~~~~~L~~l~~~-~~l~ilTNg~~~~~~~~l~~~-------g--l~~~Fd~v~~s~~~---------------- 150 (229)
T COG1011 97 LLPDYPEALEALKELGKK-YKLGILTNGARPHQERKLRQL-------G--LLDYFDAVFISEDV---------------- 150 (229)
T ss_pred hCccChhHHHHHHHHHhh-ccEEEEeCCChHHHHHHHHHc-------C--ChhhhheEEEeccc----------------
Confidence 345567788888888777 889999999888888777755 3 78999999876433
Q ss_pred CCcccccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhccccccCceEEeehHhhH
Q 006817 403 EGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICRELE 467 (630)
Q Consensus 403 ~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDI~~sKk~~gWRT~aIVpELe 467 (630)
|..+| ...+| ..+++.+|....++++|||++..||..++. .||+|+.|.++-.
T Consensus 151 -g~~KP-----~~~~f-----~~~~~~~g~~p~~~l~VgD~~~~di~gA~~-~G~~~vwi~~~~~ 203 (229)
T COG1011 151 -GVAKP-----DPEIF-----EYALEKLGVPPEEALFVGDSLENDILGARA-LGMKTVWINRGGK 203 (229)
T ss_pred -ccCCC-----CcHHH-----HHHHHHcCCCcceEEEECCChhhhhHHHHh-cCcEEEEECCCCC
Confidence 32222 12344 356778888888999999999999987765 6999998876543
No 25
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=98.25 E-value=4.8e-06 Score=78.51 Aligned_cols=109 Identities=29% Similarity=0.468 Sum_probs=76.3
Q ss_pred HHHHHcCcccccccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCC
Q 006817 313 KSEIMSKPELFVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQM 392 (630)
Q Consensus 313 k~~v~~npekYI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A~KP~FF~~ 392 (630)
...+..+.+ +...|.+..+|.+|++.|.++.++||++... ...... + ++.++||.||+...
T Consensus 75 ~~~~~~~~~--~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~-~--------~l~~~f~~i~~~~~------- 135 (183)
T TIGR01509 75 YDAILDEEK--LKPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQE-L--------GLRDLFDVVIFSGD------- 135 (183)
T ss_pred HHHHHhccC--CccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHh-c--------CCHHHCCEEEEcCC-------
Confidence 344444433 6678899999999999999999999999988 444332 2 36779999987421
Q ss_pred CCCcEEeeCCCCcccccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhccccccCceEEee
Q 006817 393 SHPLYEVVTGEGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALI 462 (630)
Q Consensus 393 ~~pf~~v~~~~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDI~~sKk~~gWRT~aI 462 (630)
.|..+| ...+| ..+.+.+|...++++||||+. .||..+++ .||+|++|
T Consensus 136 ----------~~~~KP-----~~~~~-----~~~~~~~~~~~~~~~~vgD~~-~di~aA~~-~G~~~i~v 183 (183)
T TIGR01509 136 ----------VGRGKP-----DPDIY-----LLALKKLGLKPEECLFVDDSP-AGIEAAKA-AGMHTVLV 183 (183)
T ss_pred ----------CCCCCC-----CHHHH-----HHHHHHcCCCcceEEEEcCCH-HHHHHHHH-cCCEEEeC
Confidence 010111 01222 355667788889999999998 58887764 79999976
No 26
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=98.22 E-value=3.2e-06 Score=81.95 Aligned_cols=102 Identities=25% Similarity=0.468 Sum_probs=78.2
Q ss_pred ccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeeCCCC
Q 006817 325 EPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEG 404 (630)
Q Consensus 325 ~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A~KP~FF~~~~pf~~v~~~~g 404 (630)
..-|.+..+|.+|+++|.++.++||++..++...++.+ .+.++||.|++... .|
T Consensus 92 ~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~---------gl~~~fd~i~~s~~-----------------~~ 145 (198)
T TIGR01428 92 PPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHA---------GLDDPFDAVLSADA-----------------VR 145 (198)
T ss_pred CCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHC---------CChhhhheeEehhh-----------------cC
Confidence 34588999999999999999999999999999888754 28899999887421 01
Q ss_pred cccccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhccccccCceEEeehH
Q 006817 405 LMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICR 464 (630)
Q Consensus 405 ~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDI~~sKk~~gWRT~aIVp 464 (630)
..+| ...+ .....+.+|..-.++++|||+. .||..++. .||+|+.|-+
T Consensus 146 ~~KP-----~~~~-----~~~~~~~~~~~p~~~~~vgD~~-~Di~~A~~-~G~~~i~v~r 193 (198)
T TIGR01428 146 AYKP-----APQV-----YQLALEALGVPPDEVLFVASNP-WDLGGAKK-FGFKTAWVNR 193 (198)
T ss_pred CCCC-----CHHH-----HHHHHHHhCCChhhEEEEeCCH-HHHHHHHH-CCCcEEEecC
Confidence 1111 0112 2345667788888999999999 89998865 7999999865
No 27
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=98.19 E-value=4.8e-05 Score=74.10 Aligned_cols=85 Identities=19% Similarity=0.249 Sum_probs=63.0
Q ss_pred hHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeeCCCCcccccc
Q 006817 331 PLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEGLMRPCF 410 (630)
Q Consensus 331 ~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A~KP~FF~~~~pf~~v~~~~g~l~~~~ 410 (630)
..+|..|++.|.++.++||++-.++..+++.+ .|..|||.|++...-+ . +|
T Consensus 112 ~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~---------gl~~~f~~~~~~~~~~----------------~--KP-- 162 (197)
T TIGR01548 112 KGLLRELHRAPKGMAVVTGRPRKDAAKFLTTH---------GLEILFPVQIWMEDCP----------------P--KP-- 162 (197)
T ss_pred HHHHHHHHHcCCcEEEECCCCHHHHHHHHHHc---------CchhhCCEEEeecCCC----------------C--Cc--
Confidence 78889999999999999999999999999865 3889999888743311 0 11
Q ss_pred cCCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhcccc
Q 006817 411 KARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKV 453 (630)
Q Consensus 411 ~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDI~~sKk 453 (630)
. ..+ .....+.+|....+++||||.+ .||...++
T Consensus 163 --~-p~~-----~~~~~~~~~~~~~~~i~vGD~~-~Di~aA~~ 196 (197)
T TIGR01548 163 --N-PEP-----LILAAKALGVEACHAAMVGDTV-DDIITGRK 196 (197)
T ss_pred --C-HHH-----HHHHHHHhCcCcccEEEEeCCH-HHHHHHHh
Confidence 0 111 2234556788888999999998 58876653
No 28
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=98.16 E-value=9.9e-06 Score=79.10 Aligned_cols=103 Identities=16% Similarity=0.288 Sum_probs=75.1
Q ss_pred cccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeeCCC
Q 006817 324 VEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGE 403 (630)
Q Consensus 324 I~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A~KP~FF~~~~pf~~v~~~~ 403 (630)
....|.+..+|..++++|.++.++||++-..+....... ..|.++||.|++... .
T Consensus 83 ~~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~--------~~l~~~fd~v~~s~~-----------------~ 137 (199)
T PRK09456 83 VALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEY--------PEVRAAADHIYLSQD-----------------L 137 (199)
T ss_pred hccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhc--------hhHHHhcCEEEEecc-----------------c
Confidence 345788999999999999999999999977665544322 248899999987642 1
Q ss_pred CcccccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhccccccCceEEeeh
Q 006817 404 GLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 463 (630)
Q Consensus 404 g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDI~~sKk~~gWRT~aIV 463 (630)
|..+| +..+| ....+.+|....+++||||+.. ||..++. .||+|+.|-
T Consensus 138 ~~~KP-----~p~~~-----~~~~~~~~~~p~~~l~vgD~~~-di~aA~~-aG~~~i~~~ 185 (199)
T PRK09456 138 GMRKP-----EARIY-----QHVLQAEGFSAADAVFFDDNAD-NIEAANA-LGITSILVT 185 (199)
T ss_pred CCCCC-----CHHHH-----HHHHHHcCCChhHeEEeCCCHH-HHHHHHH-cCCEEEEec
Confidence 11111 12344 3566777888899999999975 7776664 799999874
No 29
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.06 E-value=0.0001 Score=89.71 Aligned_cols=103 Identities=15% Similarity=0.247 Sum_probs=77.4
Q ss_pred cCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCC-CCccEEEEccCCCCCCCCCCCcEEeeCCCC
Q 006817 326 PDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWR-DLFNMVIVSARKPEFFQMSHPLYEVVTGEG 404 (630)
Q Consensus 326 kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWr-d~FDvVIv~A~KP~FF~~~~pf~~v~~~~g 404 (630)
.-|.+..+|..|+++|.++.++||+.-.+++.++..+ .|. .+||.||+.-.- +
T Consensus 162 ~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~---------gl~~~~Fd~iv~~~~~-----------------~ 215 (1057)
T PLN02919 162 GFPGALELITQCKNKGLKVAVASSADRIKVDANLAAA---------GLPLSMFDAIVSADAF-----------------E 215 (1057)
T ss_pred cCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHc---------CCChhHCCEEEECccc-----------------c
Confidence 3588999999999999999999999999999998765 374 899998864310 1
Q ss_pred cccccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhccccccCceEEeehHhh
Q 006817 405 LMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICREL 466 (630)
Q Consensus 405 ~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDI~~sKk~~gWRT~aIVpEL 466 (630)
..+| ...+| ....+.+|....+++||||.. .||...+. .||+|++|....
T Consensus 216 ~~KP-----~Pe~~-----~~a~~~lgv~p~e~v~IgDs~-~Di~AA~~-aGm~~I~v~~~~ 265 (1057)
T PLN02919 216 NLKP-----APDIF-----LAAAKILGVPTSECVVIEDAL-AGVQAARA-AGMRCIAVTTTL 265 (1057)
T ss_pred cCCC-----CHHHH-----HHHHHHcCcCcccEEEEcCCH-HHHHHHHH-cCCEEEEECCCC
Confidence 0111 12233 245666788889999999997 58877764 699999998653
No 30
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=98.04 E-value=1.1e-05 Score=78.86 Aligned_cols=103 Identities=20% Similarity=0.249 Sum_probs=78.1
Q ss_pred ccccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeeCC
Q 006817 323 FVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTG 402 (630)
Q Consensus 323 YI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A~KP~FF~~~~pf~~v~~~ 402 (630)
.+..-|....+|.+|+++|.++.++||+.-.++...++.+ +|.++||.|++.-.
T Consensus 73 ~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~---------~l~~~f~~i~~~~~----------------- 126 (205)
T TIGR01454 73 EVEVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEAL---------GLLPLFDHVIGSDE----------------- 126 (205)
T ss_pred ccccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHc---------CChhheeeEEecCc-----------------
Confidence 4566789999999999999999999999999999888755 48999998876311
Q ss_pred CCcccccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhccccccCceEEeeh
Q 006817 403 EGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 463 (630)
Q Consensus 403 ~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDI~~sKk~~gWRT~aIV 463 (630)
.+..+| +..+ .....+.+|....+++||||+. .||..+++ .|+++++|.
T Consensus 127 ~~~~KP-----~~~~-----~~~~~~~~~~~~~~~l~igD~~-~Di~aA~~-~Gi~~i~~~ 175 (205)
T TIGR01454 127 VPRPKP-----APDI-----VREALRLLDVPPEDAVMVGDAV-TDLASARA-AGTATVAAL 175 (205)
T ss_pred CCCCCC-----ChHH-----HHHHHHHcCCChhheEEEcCCH-HHHHHHHH-cCCeEEEEE
Confidence 010011 0112 2355666788889999999997 79998876 699999884
No 31
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=98.02 E-value=0.00014 Score=72.61 Aligned_cols=100 Identities=22% Similarity=0.293 Sum_probs=73.9
Q ss_pred ccccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeeCC
Q 006817 323 FVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTG 402 (630)
Q Consensus 323 YI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A~KP~FF~~~~pf~~v~~~ 402 (630)
....-|.++.+|..|+++|-+++++||-+-.+++.+.... .+.+|||+|+....-| .
T Consensus 87 ~~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~---------gl~~~F~~i~g~~~~~---~----------- 143 (220)
T COG0546 87 ESRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKAL---------GLADYFDVIVGGDDVP---P----------- 143 (220)
T ss_pred cCccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHh---------CCccccceEEcCCCCC---C-----------
Confidence 4566789999999999999999999999999999999974 3889999999822110 0
Q ss_pred CCcccccccCCCCccccCCCHH---HHHHHhCCCCCcEEEEcCccccchhccccccCceEEeeh
Q 006817 403 EGLMRPCFKARTGGLYSGGSAQ---MIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 463 (630)
Q Consensus 403 ~g~l~~~~~l~~G~VYsgGn~~---~l~~llg~~G~~VLYfGDHIygDI~~sKk~~gWRT~aIV 463 (630)
.+ .+.. .+++.+|....+++||||.++ ||...|. .|-.+++|-
T Consensus 144 ---~K-------------P~P~~l~~~~~~~~~~~~~~l~VGDs~~-Di~aA~~-Ag~~~v~v~ 189 (220)
T COG0546 144 ---PK-------------PDPEPLLLLLEKLGLDPEEALMVGDSLN-DILAAKA-AGVPAVGVT 189 (220)
T ss_pred ---CC-------------cCHHHHHHHHHHhCCChhheEEECCCHH-HHHHHHH-cCCCEEEEE
Confidence 00 1111 345556666348999999985 8887775 466666663
No 32
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=97.99 E-value=1.9e-05 Score=80.31 Aligned_cols=102 Identities=16% Similarity=0.174 Sum_probs=79.0
Q ss_pred cccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeeCCC
Q 006817 324 VEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGE 403 (630)
Q Consensus 324 I~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A~KP~FF~~~~pf~~v~~~~ 403 (630)
+..-|.+..+|..|++.|.++.++||++-.++...++.+ .|.+|||.||+...-+.
T Consensus 107 ~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~---------gl~~~Fd~iv~~~~~~~--------------- 162 (248)
T PLN02770 107 LKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLL---------GLSDFFQAVIIGSECEH--------------- 162 (248)
T ss_pred CCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHc---------CChhhCcEEEecCcCCC---------------
Confidence 345678999999999999999999999999999999865 38999999988763210
Q ss_pred CcccccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhccccccCceEEeeh
Q 006817 404 GLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 463 (630)
Q Consensus 404 g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDI~~sKk~~gWRT~aIV 463 (630)
+ +| . ..+ .....+.+|....+++||||.. .||..++. .|++|++|-
T Consensus 163 ~--KP----~-p~~-----~~~a~~~~~~~~~~~l~vgDs~-~Di~aA~~-aGi~~i~v~ 208 (248)
T PLN02770 163 A--KP----H-PDP-----YLKALEVLKVSKDHTFVFEDSV-SGIKAGVA-AGMPVVGLT 208 (248)
T ss_pred C--CC----C-hHH-----HHHHHHHhCCChhHEEEEcCCH-HHHHHHHH-CCCEEEEEe
Confidence 0 10 0 111 2344566788888999999999 89998874 699999984
No 33
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=97.98 E-value=2.6e-05 Score=75.87 Aligned_cols=105 Identities=17% Similarity=0.276 Sum_probs=79.4
Q ss_pred ccccccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEee
Q 006817 321 ELFVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVV 400 (630)
Q Consensus 321 ekYI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A~KP~FF~~~~pf~~v~ 400 (630)
.+.+..-|....+|..|+++|.++.++||+.-.++..+++.+ +|.++||.|++....
T Consensus 81 ~~~~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~---------~l~~~f~~~~~~~~~-------------- 137 (213)
T TIGR01449 81 GELTSVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELL---------GLAKYFSVLIGGDSL-------------- 137 (213)
T ss_pred cccCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc---------CcHhhCcEEEecCCC--------------
Confidence 345566789999999999999999999999999999999865 489999988753211
Q ss_pred CCCCcccccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhccccccCceEEeeh
Q 006817 401 TGEGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 463 (630)
Q Consensus 401 ~~~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDI~~sKk~~gWRT~aIV 463 (630)
+..+| +..+ ...+.+.+|....+++||||+ ..|+..+++ .|+.+++|.
T Consensus 138 ---~~~Kp-----~p~~-----~~~~~~~~~~~~~~~~~igDs-~~d~~aa~~-aG~~~i~v~ 185 (213)
T TIGR01449 138 ---AQRKP-----HPDP-----LLLAAERLGVAPQQMVYVGDS-RVDIQAARA-AGCPSVLLT 185 (213)
T ss_pred ---CCCCC-----ChHH-----HHHHHHHcCCChhHeEEeCCC-HHHHHHHHH-CCCeEEEEc
Confidence 00011 0112 235566678888899999999 589998876 699999884
No 34
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=97.94 E-value=2e-05 Score=71.79 Aligned_cols=99 Identities=26% Similarity=0.313 Sum_probs=71.3
Q ss_pred ccccCCCchHHHHHHHHhCCeEEEEeCCC--------hHHHHHhhcccccccCCCCCCCCCCccEEEEcc--CCCCCCCC
Q 006817 323 FVEPDPELPLALLDQKEAGKKLLLITNSD--------YHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSA--RKPEFFQM 392 (630)
Q Consensus 323 YI~kdp~l~~~L~~lr~~GKKlFLiTNS~--------~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A--~KP~FF~~ 392 (630)
....-|.+..+|..|+++|.+++++||+. .+++...+..+- .. |+.+++.. .||
T Consensus 23 ~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~---------l~--~~~~~~~~~~~KP----- 86 (132)
T TIGR01662 23 ERILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELG---------VP--IDVLYACPHCRKP----- 86 (132)
T ss_pred HheeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCC---------CC--EEEEEECCCCCCC-----
Confidence 34556889999999999999999999999 667777776551 11 44444332 111
Q ss_pred CCCcEEeeCCCCcccccccCCCCccccCCCHHHHHHHh-CCCCCcEEEEcCccccchhccccccCceEEeehH
Q 006817 393 SHPLYEVVTGEGLMRPCFKARTGGLYSGGSAQMIENSL-NIHGDEILYVGDHIYTDVSQSKVHLRWRTALICR 464 (630)
Q Consensus 393 ~~pf~~v~~~~g~l~~~~~l~~G~VYsgGn~~~l~~ll-g~~G~~VLYfGDHIygDI~~sKk~~gWRT~aIVp 464 (630)
+. +-...+++.+ +...++++||||+...||..++. .||+|+.|-|
T Consensus 87 ---------------------~~-----~~~~~~~~~~~~~~~~~~v~IGD~~~~Di~~A~~-~Gi~~i~~~~ 132 (132)
T TIGR01662 87 ---------------------KP-----GMFLEALKRFNEIDPEESVYVGDQDLTDLQAAKR-AGLAFILVAP 132 (132)
T ss_pred ---------------------Ch-----HHHHHHHHHcCCCChhheEEEcCCCcccHHHHHH-CCCeEEEeeC
Confidence 11 2224566677 58889999999988899998865 6999999854
No 35
>PRK09449 dUMP phosphatase; Provisional
Probab=97.90 E-value=2.7e-05 Score=76.80 Aligned_cols=103 Identities=19% Similarity=0.321 Sum_probs=75.7
Q ss_pred cccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeeCCC
Q 006817 324 VEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGE 403 (630)
Q Consensus 324 I~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A~KP~FF~~~~pf~~v~~~~ 403 (630)
+..-|....+|..|+ +|.++.++||+..+.++..+..+ .+.++||.||+...-
T Consensus 94 ~~~~~g~~~~L~~L~-~~~~~~i~Tn~~~~~~~~~l~~~---------~l~~~fd~v~~~~~~----------------- 146 (224)
T PRK09449 94 CTPLPGAVELLNALR-GKVKMGIITNGFTELQQVRLERT---------GLRDYFDLLVISEQV----------------- 146 (224)
T ss_pred CccCccHHHHHHHHH-hCCeEEEEeCCcHHHHHHHHHhC---------ChHHHcCEEEEECcc-----------------
Confidence 345688999999999 67899999999999999888765 388899999876421
Q ss_pred CcccccccCCCCccccCCCHHHHHHHhCCCC-CcEEEEcCccccchhccccccCceEEeehH
Q 006817 404 GLMRPCFKARTGGLYSGGSAQMIENSLNIHG-DEILYVGDHIYTDVSQSKVHLRWRTALICR 464 (630)
Q Consensus 404 g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G-~~VLYfGDHIygDI~~sKk~~gWRT~aIVp 464 (630)
|..+| . ..+| ....+.+|... .+++||||+...||..++. .||+|+.|.+
T Consensus 147 ~~~KP----~-p~~~-----~~~~~~~~~~~~~~~~~vgD~~~~Di~~A~~-aG~~~i~~~~ 197 (224)
T PRK09449 147 GVAKP----D-VAIF-----DYALEQMGNPDRSRVLMVGDNLHSDILGGIN-AGIDTCWLNA 197 (224)
T ss_pred CCCCC----C-HHHH-----HHHHHHcCCCCcccEEEEcCCcHHHHHHHHH-CCCcEEEECC
Confidence 11111 0 1122 34455567654 6899999999999997765 6999999863
No 36
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=97.81 E-value=3e-05 Score=77.86 Aligned_cols=104 Identities=15% Similarity=0.229 Sum_probs=75.9
Q ss_pred cccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeeCCC
Q 006817 324 VEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGE 403 (630)
Q Consensus 324 I~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A~KP~FF~~~~pf~~v~~~~ 403 (630)
+..-|.+..+|..|+++|.++.++||++..+++..++.+ .|.++||.||+...-.
T Consensus 92 ~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~---------~l~~~fd~iv~s~~~~---------------- 146 (224)
T PRK14988 92 AVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHT---------GLDAHLDLLLSTHTFG---------------- 146 (224)
T ss_pred CCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHC---------CcHHHCCEEEEeeeCC----------------
Confidence 345678999999999999999999999999999888764 3999999988654210
Q ss_pred CcccccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhccccccCceEEeehHh
Q 006817 404 GLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICRE 465 (630)
Q Consensus 404 g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDI~~sKk~~gWRT~aIVpE 465 (630)
..+| ...+| ...++.+|....+++||||... ||..++ ..||+|+..|+-
T Consensus 147 -~~KP-----~p~~~-----~~~~~~~~~~p~~~l~igDs~~-di~aA~-~aG~~~~~~v~~ 195 (224)
T PRK14988 147 -YPKE-----DQRLW-----QAVAEHTGLKAERTLFIDDSEP-ILDAAA-QFGIRYCLGVTN 195 (224)
T ss_pred -CCCC-----CHHHH-----HHHHHHcCCChHHEEEEcCCHH-HHHHHH-HcCCeEEEEEeC
Confidence 0011 01122 3456667888889999999985 777665 579998665543
No 37
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=97.70 E-value=8.5e-05 Score=72.56 Aligned_cols=102 Identities=18% Similarity=0.300 Sum_probs=77.6
Q ss_pred ccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeeCCCC
Q 006817 325 EPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEG 404 (630)
Q Consensus 325 ~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A~KP~FF~~~~pf~~v~~~~g 404 (630)
...|....+|.++++. .++.++||+.-......+..+ .|..+||.|++...- |
T Consensus 97 ~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~~~~~~l~~~---------~l~~~fd~i~~~~~~-----------------~ 149 (224)
T TIGR02254 97 QLLPGAFELMENLQQK-FRLYIVTNGVRETQYKRLRKS---------GLFPFFDDIFVSEDA-----------------G 149 (224)
T ss_pred eeCccHHHHHHHHHhc-CcEEEEeCCchHHHHHHHHHC---------CcHhhcCEEEEcCcc-----------------C
Confidence 4457889999999998 899999999999999888765 488899999885421 1
Q ss_pred cccccccCCCCccccCCCHHHHHHHh-CCCCCcEEEEcCccccchhccccccCceEEeehH
Q 006817 405 LMRPCFKARTGGLYSGGSAQMIENSL-NIHGDEILYVGDHIYTDVSQSKVHLRWRTALICR 464 (630)
Q Consensus 405 ~l~~~~~l~~G~VYsgGn~~~l~~ll-g~~G~~VLYfGDHIygDI~~sKk~~gWRT~aIVp 464 (630)
..+| +..+| ....+.+ |....+++||||+...||..+++ .||.++.+-+
T Consensus 150 ~~KP-----~~~~~-----~~~~~~~~~~~~~~~v~igD~~~~di~~A~~-~G~~~i~~~~ 199 (224)
T TIGR02254 150 IQKP-----DKEIF-----NYALERMPKFSKEEVLMIGDSLTADIKGGQN-AGLDTCWMNP 199 (224)
T ss_pred CCCC-----CHHHH-----HHHHHHhcCCCchheEEECCCcHHHHHHHHH-CCCcEEEECC
Confidence 1111 11233 2445556 88888999999999899998876 6999999865
No 38
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=97.69 E-value=6.5e-05 Score=71.40 Aligned_cols=98 Identities=16% Similarity=0.209 Sum_probs=69.9
Q ss_pred ccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeeCCCC
Q 006817 325 EPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEG 404 (630)
Q Consensus 325 ~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A~KP~FF~~~~pf~~v~~~~g 404 (630)
..-|.+..+|..|+++|.++.++||+.- ....++.+ .|.++||.||....-+
T Consensus 87 ~~~pg~~~~L~~L~~~g~~~~i~s~~~~--~~~~l~~~---------~l~~~f~~~~~~~~~~----------------- 138 (185)
T TIGR01990 87 DVLPGIKNLLDDLKKNNIKIALASASKN--APTVLEKL---------GLIDYFDAIVDPAEIK----------------- 138 (185)
T ss_pred ccCccHHHHHHHHHHCCCeEEEEeCCcc--HHHHHHhc---------CcHhhCcEEEehhhcC-----------------
Confidence 3458899999999999999999999853 34444433 4889999988654211
Q ss_pred cccccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhccccccCceEEee
Q 006817 405 LMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALI 462 (630)
Q Consensus 405 ~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDI~~sKk~~gWRT~aI 462 (630)
..+| +..+|. ..++.++...++++||||+. .||..++. .||+|++|
T Consensus 139 ~~kp-----~p~~~~-----~~~~~~~~~~~~~v~vgD~~-~di~aA~~-aG~~~i~v 184 (185)
T TIGR01990 139 KGKP-----DPEIFL-----AAAEGLGVSPSECIGIEDAQ-AGIEAIKA-AGMFAVGV 184 (185)
T ss_pred CCCC-----ChHHHH-----HHHHHcCCCHHHeEEEecCH-HHHHHHHH-cCCEEEec
Confidence 0000 122332 45566778888999999996 89988875 69999986
No 39
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=97.67 E-value=0.00013 Score=74.09 Aligned_cols=103 Identities=18% Similarity=0.180 Sum_probs=76.0
Q ss_pred ccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEE--ccCCCCCCCCCCCcEEeeCC
Q 006817 325 EPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIV--SARKPEFFQMSHPLYEVVTG 402 (630)
Q Consensus 325 ~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv--~A~KP~FF~~~~pf~~v~~~ 402 (630)
..-|++..+|.+|+++|.++.++||++-..+..++.+.-. .++.+|||.++. -+.||
T Consensus 95 ~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~~------~~L~~~f~~~fd~~~g~KP--------------- 153 (220)
T TIGR01691 95 HLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSDA------GNLTPYFSGYFDTTVGLKT--------------- 153 (220)
T ss_pred CcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhccc------cchhhhcceEEEeCcccCC---------------
Confidence 4457899999999999999999999999999998887531 246666664321 01122
Q ss_pred CCcccccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhccccccCceEEeehHhh
Q 006817 403 EGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICREL 466 (630)
Q Consensus 403 ~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDI~~sKk~~gWRT~aIVpEL 466 (630)
.... ...+.+.+|....++|||||+. .||..++. .||+|+++++.=
T Consensus 154 -----------~p~~-----y~~i~~~lgv~p~e~lfVgDs~-~Di~AA~~-AG~~ti~v~r~g 199 (220)
T TIGR01691 154 -----------EAQS-----YVKIAGQLGSPPREILFLSDII-NELDAARK-AGLHTGQLVRPG 199 (220)
T ss_pred -----------CHHH-----HHHHHHHhCcChhHEEEEeCCH-HHHHHHHH-cCCEEEEEECCC
Confidence 1122 3456677788889999999995 89888765 799999998643
No 40
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=97.67 E-value=8.6e-05 Score=64.85 Aligned_cols=113 Identities=24% Similarity=0.291 Sum_probs=80.2
Q ss_pred cccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeeCCC
Q 006817 324 VEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGE 403 (630)
Q Consensus 324 I~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A~KP~FF~~~~pf~~v~~~~ 403 (630)
+...|.+..+|.+|+++|.+++++||+...++...++.+ .+..+|+.|+.....+.+-.......
T Consensus 23 ~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~---------~~~~~~~~i~~~~~~~~~~~~~~~~~------ 87 (139)
T cd01427 23 LELYPGVKEALKELKEKGIKLALATNKSRREVLELLEEL---------GLDDYFDPVITSNGAAIYYPKEGLFL------ 87 (139)
T ss_pred CCcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHc---------CCchhhhheeccchhhhhcccccccc------
Confidence 455678999999999999999999999999998888764 26688898887776654432221110
Q ss_pred CcccccccCCCCcccc----CCCHHHHHHHhCCCCCcEEEEcCccccchhccccccCceEEee
Q 006817 404 GLMRPCFKARTGGLYS----GGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALI 462 (630)
Q Consensus 404 g~l~~~~~l~~G~VYs----gGn~~~l~~llg~~G~~VLYfGDHIygDI~~sKk~~gWRT~aI 462 (630)
....++. .+....+.+.++...++++||||+. +|+...+. .||+|++|
T Consensus 88 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igD~~-~d~~~~~~-~g~~~i~v 139 (139)
T cd01427 88 ---------GGGPFDIGKPNPDKLLAALKLLGVDPEEVLMVGDSL-NDIEMAKA-AGGLGVAV 139 (139)
T ss_pred ---------cccccccCCCCHHHHHHHHHHcCCChhhEEEeCCCH-HHHHHHHH-cCCceeeC
Confidence 0011111 1222355666677788999999999 99988874 59999875
No 41
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=97.65 E-value=0.0001 Score=70.03 Aligned_cols=100 Identities=16% Similarity=0.214 Sum_probs=74.3
Q ss_pred ccccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeeCC
Q 006817 323 FVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTG 402 (630)
Q Consensus 323 YI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A~KP~FF~~~~pf~~v~~~ 402 (630)
.+...|.+..+|..|+++|.++.++||+ ..++.+++.+ .|.+|||.|+.....+
T Consensus 86 ~~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~~---------~l~~~f~~v~~~~~~~--------------- 139 (185)
T TIGR02009 86 GAEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAKL---------GLTDYFDAIVDADEVK--------------- 139 (185)
T ss_pred CCCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHHc---------ChHHHCCEeeehhhCC---------------
Confidence 3667889999999999999999999999 6677777754 4889999998753211
Q ss_pred CCcccccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhccccccCceEEee
Q 006817 403 EGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALI 462 (630)
Q Consensus 403 ~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDI~~sKk~~gWRT~aI 462 (630)
..+| ...+| ....+-+|...++++||||.. .||..++. .||+|++|
T Consensus 140 --~~kp-----~~~~~-----~~~~~~~~~~~~~~v~IgD~~-~di~aA~~-~G~~~i~v 185 (185)
T TIGR02009 140 --EGKP-----HPETF-----LLAAELLGVSPNECVVFEDAL-AGVQAARA-AGMFAVAV 185 (185)
T ss_pred --CCCC-----ChHHH-----HHHHHHcCCCHHHeEEEeCcH-hhHHHHHH-CCCeEeeC
Confidence 0011 01222 345666788888999999995 79998876 59999875
No 42
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=97.63 E-value=9e-05 Score=71.17 Aligned_cols=102 Identities=21% Similarity=0.367 Sum_probs=71.9
Q ss_pred cccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeeCCC
Q 006817 324 VEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGE 403 (630)
Q Consensus 324 I~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A~KP~FF~~~~pf~~v~~~~ 403 (630)
+...|.+..+|.+|+ +++.++||++-..+...++.+ .+.++||.|++...-..-.
T Consensus 83 ~~~~~g~~~~L~~L~---~~~~i~Tn~~~~~~~~~l~~~---------gl~~~fd~i~~~~~~~~~~------------- 137 (184)
T TIGR01993 83 LKPDPELRNLLLRLP---GRKIIFTNGDRAHARRALNRL---------GIEDCFDGIFCFDTANPDY------------- 137 (184)
T ss_pred CCCCHHHHHHHHhCC---CCEEEEeCCCHHHHHHHHHHc---------CcHhhhCeEEEeecccCcc-------------
Confidence 446678888999887 469999999999999888865 3889999988764321000
Q ss_pred CcccccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhccccccCceEEee
Q 006817 404 GLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALI 462 (630)
Q Consensus 404 g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDI~~sKk~~gWRT~aI 462 (630)
+..+| ...+| ....+.+|....+++||||+. .||..+++ .|++|++|
T Consensus 138 ~~~KP-----~p~~~-----~~~~~~~~~~~~~~l~vgD~~-~di~aA~~-~G~~~i~v 184 (184)
T TIGR01993 138 LLPKP-----SPQAY-----EKALREAGVDPERAIFFDDSA-RNIAAAKA-LGMKTVLV 184 (184)
T ss_pred CCCCC-----CHHHH-----HHHHHHhCCCccceEEEeCCH-HHHHHHHH-cCCEEeeC
Confidence 00011 01233 345566788889999999997 58877765 69999875
No 43
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=97.58 E-value=0.00011 Score=70.90 Aligned_cols=95 Identities=23% Similarity=0.290 Sum_probs=65.8
Q ss_pred cCCCchHHHHHHHHhCCeEEEEeCCC-hHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeeCCCC
Q 006817 326 PDPELPLALLDQKEAGKKLLLITNSD-YHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEG 404 (630)
Q Consensus 326 kdp~l~~~L~~lr~~GKKlFLiTNS~-~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A~KP~FF~~~~pf~~v~~~~g 404 (630)
.-|.+..+|..|++.|.+++++||++ -..+..+.+.+ | +..+ ....||
T Consensus 44 ~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~-g--------l~~~-----~~~~KP----------------- 92 (170)
T TIGR01668 44 AYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKAL-G--------IPVL-----PHAVKP----------------- 92 (170)
T ss_pred cChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHc-C--------CEEE-----cCCCCC-----------------
Confidence 34678899999999999999999998 45554444322 1 2111 011122
Q ss_pred cccccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhccccccCceEEeehHhh
Q 006817 405 LMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICREL 466 (630)
Q Consensus 405 ~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDI~~sKk~~gWRT~aIVpEL 466 (630)
++. -....++.+|...++++||||+++.||..++. .||+|++|-+.-
T Consensus 93 ---------~p~-----~~~~~l~~~~~~~~~~l~IGDs~~~Di~aA~~-aGi~~i~v~~g~ 139 (170)
T TIGR01668 93 ---------PGC-----AFRRAHPEMGLTSEQVAVVGDRLFTDVMGGNR-NGSYTILVEPLV 139 (170)
T ss_pred ---------ChH-----HHHHHHHHcCCCHHHEEEECCcchHHHHHHHH-cCCeEEEEccCc
Confidence 011 22345666788889999999999999998876 699999996654
No 44
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=97.54 E-value=0.00017 Score=75.40 Aligned_cols=105 Identities=11% Similarity=0.154 Sum_probs=77.0
Q ss_pred cccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeeCCC
Q 006817 324 VEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGE 403 (630)
Q Consensus 324 I~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A~KP~FF~~~~pf~~v~~~~ 403 (630)
+..-|.+..+|..|++.|.++.++||+.-.+.+.++..+.+ ..|.++||+| .... .
T Consensus 143 ~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~~------~~~~~~~~~v-~~~~-----------------~ 198 (286)
T PLN02779 143 LPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLLG------PERAQGLDVF-AGDD-----------------V 198 (286)
T ss_pred CCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcc------ccccCceEEE-eccc-----------------c
Confidence 34567899999999999999999999999999999887642 4577788876 2110 0
Q ss_pred CcccccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhccccccCceEEeehH
Q 006817 404 GLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICR 464 (630)
Q Consensus 404 g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDI~~sKk~~gWRT~aIVp 464 (630)
+..+| . ..+ .....+.+|....+++||||.+ .||..++. .||++++|..
T Consensus 199 ~~~KP----~-p~~-----~~~a~~~~~~~p~~~l~IGDs~-~Di~aA~~-aG~~~i~v~~ 247 (286)
T PLN02779 199 PKKKP----D-PDI-----YNLAAETLGVDPSRCVVVEDSV-IGLQAAKA-AGMRCIVTKS 247 (286)
T ss_pred CCCCC----C-HHH-----HHHHHHHhCcChHHEEEEeCCH-HhHHHHHH-cCCEEEEEcc
Confidence 11111 0 111 2345667788889999999997 69998876 6999998854
No 45
>PLN02811 hydrolase
Probab=97.47 E-value=0.00029 Score=69.97 Aligned_cols=101 Identities=15% Similarity=0.173 Sum_probs=67.4
Q ss_pred CCCchHHHHHHHHhCCeEEEEeCCChHHHHH-hhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeeCCCCc
Q 006817 327 DPELPLALLDQKEAGKKLLLITNSDYHYTDK-MMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEGL 405 (630)
Q Consensus 327 dp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~-~M~Yl~~~~l~~g~dWrd~FDvVIv~A~KP~FF~~~~pf~~v~~~~g~ 405 (630)
-|.+..+|..|++.|.++.++||+.-.+... ...+ ..|.++||.|++... |. .+.
T Consensus 80 ~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~---------~~l~~~f~~i~~~~~-~~--------------~~~ 135 (220)
T PLN02811 80 MPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRH---------GELFSLMHHVVTGDD-PE--------------VKQ 135 (220)
T ss_pred CccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHccc---------HHHHhhCCEEEECCh-hh--------------ccC
Confidence 4788999999999999999999998765443 3332 138899998887541 00 000
Q ss_pred ccccccCCCCccccCCCHHHHHHHh---CCCCCcEEEEcCccccchhccccccCceEEeeh
Q 006817 406 MRPCFKARTGGLYSGGSAQMIENSL---NIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 463 (630)
Q Consensus 406 l~~~~~l~~G~VYsgGn~~~l~~ll---g~~G~~VLYfGDHIygDI~~sKk~~gWRT~aIV 463 (630)
.+| ...+| ....+.+ |....+++||||+. .|+..++. .|++|++|-
T Consensus 136 ~KP-----~p~~~-----~~a~~~~~~~~~~~~~~v~IgDs~-~di~aA~~-aG~~~i~v~ 184 (220)
T PLN02811 136 GKP-----APDIF-----LAAARRFEDGPVDPGKVLVFEDAP-SGVEAAKN-AGMSVVMVP 184 (220)
T ss_pred CCC-----CcHHH-----HHHHHHhCCCCCCccceEEEeccH-hhHHHHHH-CCCeEEEEe
Confidence 011 01222 1223333 36678999999998 58887765 699999984
No 46
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=97.41 E-value=0.00099 Score=68.64 Aligned_cols=105 Identities=22% Similarity=0.388 Sum_probs=70.9
Q ss_pred cccccccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEe
Q 006817 320 PELFVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEV 399 (630)
Q Consensus 320 pekYI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A~KP~FF~~~~pf~~v 399 (630)
|+-|..-++.. .+|+++|+.|.+|-++||=+..+- ...=. ..=..|||.||+++.-
T Consensus 109 ~~~~~~~~~~~-~~lq~lR~~g~~l~iisN~d~r~~--~~l~~--------~~l~~~fD~vv~S~e~------------- 164 (237)
T KOG3085|consen 109 PSAWKYLDGMQ-ELLQKLRKKGTILGIISNFDDRLR--LLLLP--------LGLSAYFDFVVESCEV------------- 164 (237)
T ss_pred ccCceeccHHH-HHHHHHHhCCeEEEEecCCcHHHH--HHhhc--------cCHHHhhhhhhhhhhh-------------
Confidence 44454555545 899999999954544444444443 22211 1234899999987531
Q ss_pred eCCCCcccccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhccccccCceEEeeh
Q 006817 400 VTGEGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 463 (630)
Q Consensus 400 ~~~~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDI~~sKk~~gWRT~aIV 463 (630)
|..+| -.+||+ ..++.+|..-.+|+++||..-.|+..++. .||+|.+|.
T Consensus 165 ----g~~KP-----Dp~If~-----~al~~l~v~Pee~vhIgD~l~nD~~gA~~-~G~~ailv~ 213 (237)
T KOG3085|consen 165 ----GLEKP-----DPRIFQ-----LALERLGVKPEECVHIGDLLENDYEGARN-LGWHAILVD 213 (237)
T ss_pred ----ccCCC-----ChHHHH-----HHHHHhCCChHHeEEecCccccccHhHHH-cCCEEEEEc
Confidence 22222 134652 45788888888999999999999998875 699999997
No 47
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=97.35 E-value=0.00045 Score=67.89 Aligned_cols=109 Identities=15% Similarity=0.102 Sum_probs=71.2
Q ss_pred CCCchHHHHHHHHhCCeEEEEeCC-ChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeeCCCCc
Q 006817 327 DPELPLALLDQKEAGKKLLLITNS-DYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEGL 405 (630)
Q Consensus 327 dp~l~~~L~~lr~~GKKlFLiTNS-~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A~KP~FF~~~~pf~~v~~~~g~ 405 (630)
-|....+|..|+++|.+++++||+ .-.++..+|.++--...+.....-++||.||+.. +| +.
T Consensus 47 ~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~~~~l~~~~~~~~~~~~Fd~iv~~~-~~----------------~~ 109 (174)
T TIGR01685 47 IKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILGTFEITYAGKTVPMHSLFDDRIEIY-KP----------------NK 109 (174)
T ss_pred cccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHhCCcCCCCCcccHHHhceeeeecc-CC----------------ch
Confidence 477889999999999999999999 9999999998762000001111228999998853 22 00
Q ss_pred ccccccCCCCccccCCCHHHHHHHh--CCCCCcEEEEcCccccchhccccccCceEEeehH
Q 006817 406 MRPCFKARTGGLYSGGSAQMIENSL--NIHGDEILYVGDHIYTDVSQSKVHLRWRTALICR 464 (630)
Q Consensus 406 l~~~~~l~~G~VYsgGn~~~l~~ll--g~~G~~VLYfGDHIygDI~~sKk~~gWRT~aIVp 464 (630)
..+. ..+ +..+.+.. |..-.+++||||.. .||...+ ..|++|++|..
T Consensus 110 ~kp~-----~~i-----~~~~~~~~~~gl~p~e~l~VgDs~-~di~aA~-~aGi~~i~v~~ 158 (174)
T TIGR01685 110 AKQL-----EMI-----LQKVNKVDPSVLKPAQILFFDDRT-DNVREVW-GYGVTSCYCPS 158 (174)
T ss_pred HHHH-----HHH-----HHHhhhcccCCCCHHHeEEEcChh-HhHHHHH-HhCCEEEEcCC
Confidence 0000 000 11222333 56678999999999 4566654 67999999843
No 48
>PLN02954 phosphoserine phosphatase
Probab=97.34 E-value=0.0046 Score=61.02 Aligned_cols=37 Identities=11% Similarity=0.183 Sum_probs=33.9
Q ss_pred cCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhccc
Q 006817 326 PDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHS 362 (630)
Q Consensus 326 kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl 362 (630)
..|....+|..++++|.++.++||+.-.++..+++.+
T Consensus 85 l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~ 121 (224)
T PLN02954 85 LSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAIL 121 (224)
T ss_pred CCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHh
Confidence 4588999999999999999999999999999998865
No 49
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=97.29 E-value=0.00037 Score=70.37 Aligned_cols=99 Identities=25% Similarity=0.349 Sum_probs=69.6
Q ss_pred cccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeeCCC
Q 006817 324 VEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGE 403 (630)
Q Consensus 324 I~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A~KP~FF~~~~pf~~v~~~~ 403 (630)
+..-|.+..+|..|++. .++.++||++.. ++. ..+.+|||.||+...-
T Consensus 112 ~~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~-----~~~---------~gl~~~fd~i~~~~~~----------------- 159 (238)
T PRK10748 112 IDVPQATHDTLKQLAKK-WPLVAITNGNAQ-----PEL---------FGLGDYFEFVLRAGPH----------------- 159 (238)
T ss_pred CCCCccHHHHHHHHHcC-CCEEEEECCCch-----HHH---------CCcHHhhceeEecccC-----------------
Confidence 45568899999999875 679999998765 221 2488999998865321
Q ss_pred CcccccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhccccccCceEEeehHh
Q 006817 404 GLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICRE 465 (630)
Q Consensus 404 g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDI~~sKk~~gWRT~aIVpE 465 (630)
+..+| +..+| ....+.+|....+++||||++..||..++. .||+|+.|-+.
T Consensus 160 ~~~KP-----~p~~~-----~~a~~~~~~~~~~~~~VGD~~~~Di~~A~~-aG~~~i~v~~~ 210 (238)
T PRK10748 160 GRSKP-----FSDMY-----HLAAEKLNVPIGEILHVGDDLTTDVAGAIR-CGMQACWINPE 210 (238)
T ss_pred CcCCC-----cHHHH-----HHHHHHcCCChhHEEEEcCCcHHHHHHHHH-CCCeEEEEcCC
Confidence 00011 01122 233455678888999999999999998876 79999998653
No 50
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=97.20 E-value=0.00047 Score=64.69 Aligned_cols=104 Identities=18% Similarity=0.268 Sum_probs=64.0
Q ss_pred ccCCCchHHHHHHHHhCCeEEEEeCCCh---------------HHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCC
Q 006817 325 EPDPELPLALLDQKEAGKKLLLITNSDY---------------HYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEF 389 (630)
Q Consensus 325 ~kdp~l~~~L~~lr~~GKKlFLiTNS~~---------------~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A~KP~F 389 (630)
...|.+..+|..|+++|.++.++||.+. ..+..+++.+ + +. |+.++.....|.
T Consensus 27 ~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~--------l~--~~~~~~~~~~~~- 94 (147)
T TIGR01656 27 QLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQL-G--------VA--VDGVLFCPHHPA- 94 (147)
T ss_pred EEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhC-C--------Cc--eeEEEECCCCCC-
Confidence 3468889999999999999999999873 3444444433 1 21 111111110000
Q ss_pred CCCCCCcEEeeCCCCcccccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhccccccCceEEeeh
Q 006817 390 FQMSHPLYEVVTGEGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 463 (630)
Q Consensus 390 F~~~~pf~~v~~~~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDI~~sKk~~gWRT~aIV 463 (630)
...+..+| + -+-+..+.+.+|....+++||||+ ..||..++. .||+|++|.
T Consensus 95 -----------~~~~~~KP----~------~~~~~~~~~~~~~~~~e~i~IGDs-~~Di~~A~~-~Gi~~v~i~ 145 (147)
T TIGR01656 95 -----------DNCSCRKP----K------PGLILEALKRLGVDASRSLVVGDR-LRDLQAARN-AGLAAVLLV 145 (147)
T ss_pred -----------CCCCCCCC----C------HHHHHHHHHHcCCChHHEEEEcCC-HHHHHHHHH-CCCCEEEec
Confidence 00000011 0 111345566678888899999999 889988864 799999985
No 51
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=97.19 E-value=0.00079 Score=64.98 Aligned_cols=107 Identities=21% Similarity=0.214 Sum_probs=71.2
Q ss_pred ccccCCCchHHHHHHHHhCCeEEEEeCCC---------------hHHHHHhhcccccccCCCCCCCCCCccEEEEccCCC
Q 006817 323 FVEPDPELPLALLDQKEAGKKLLLITNSD---------------YHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKP 387 (630)
Q Consensus 323 YI~kdp~l~~~L~~lr~~GKKlFLiTNS~---------------~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A~KP 387 (630)
.+..-|.+..+|.+|+++|.+++++||.+ ..+++.+.+.+ ++. ||-+++.+.+|
T Consensus 27 ~~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~---------gl~--fd~ii~~~~~~ 95 (161)
T TIGR01261 27 KLRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQ---------GII--FDDVLICPHFP 95 (161)
T ss_pred HeeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHC---------CCc--eeEEEECCCCC
Confidence 35566889999999999999999999963 44555555433 243 87666554333
Q ss_pred CCCCCCCCcEEeeCCCCcccccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhccccccCceEEeehH
Q 006817 388 EFFQMSHPLYEVVTGEGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICR 464 (630)
Q Consensus 388 ~FF~~~~pf~~v~~~~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDI~~sKk~~gWRT~aIVp 464 (630)
. + +.+..+| .-+-+..+.+.+|....+++||||. ..|+..++. .||.+++|-+
T Consensus 96 ~---~---------~~~~~KP----------~~~~~~~~~~~~~~~~~e~l~IGD~-~~Di~~A~~-aGi~~i~~~~ 148 (161)
T TIGR01261 96 D---D---------NCDCRKP----------KIKLLEPYLKKNLIDKARSYVIGDR-ETDMQLAEN-LGIRGIQYDE 148 (161)
T ss_pred C---C---------CCCCCCC----------CHHHHHHHHHHcCCCHHHeEEEeCC-HHHHHHHHH-CCCeEEEECh
Confidence 1 0 0011111 0122345566667777899999998 679998775 6999999864
No 52
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=97.09 E-value=0.00083 Score=62.32 Aligned_cols=86 Identities=26% Similarity=0.349 Sum_probs=62.2
Q ss_pred CCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeeCCCCccc
Q 006817 328 PELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEGLMR 407 (630)
Q Consensus 328 p~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A~KP~FF~~~~pf~~v~~~~g~l~ 407 (630)
|.+..+|..|++.|.++.++||+....+...+.+.+ .++|+.|++... + + -+
T Consensus 67 ~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~l----------~~~f~~i~~~~~-~----------------~-~K 118 (154)
T TIGR01549 67 RGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKHL----------GDYFDLILGSDE-F----------------G-AK 118 (154)
T ss_pred cCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHHH----------HhcCcEEEecCC-C----------------C-CC
Confidence 678999999999999999999999999999888753 246888775321 0 0 00
Q ss_pred ccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhcccc
Q 006817 408 PCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKV 453 (630)
Q Consensus 408 ~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDI~~sKk 453 (630)
| ++ .....+++.+|... +++||||+ -.|+..++.
T Consensus 119 p-----~~-----~~~~~~~~~~~~~~-~~l~iGDs-~~Di~aa~~ 152 (154)
T TIGR01549 119 P-----EP-----EIFLAALESLGLPP-EVLHVGDN-LNDIEGARN 152 (154)
T ss_pred c-----CH-----HHHHHHHHHcCCCC-CEEEEeCC-HHHHHHHHH
Confidence 0 01 11234566678877 99999999 788876653
No 53
>PRK06769 hypothetical protein; Validated
Probab=97.03 E-value=0.0009 Score=64.83 Aligned_cols=96 Identities=19% Similarity=0.197 Sum_probs=61.8
Q ss_pred cCCCchHHHHHHHHhCCeEEEEeCCChH---------HHHHhhcccccccCCCCCCCCCCccEEEE-----ccCCCCCCC
Q 006817 326 PDPELPLALLDQKEAGKKLLLITNSDYH---------YTDKMMQHSFNRFLPNDMGWRDLFNMVIV-----SARKPEFFQ 391 (630)
Q Consensus 326 kdp~l~~~L~~lr~~GKKlFLiTNS~~~---------Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv-----~A~KP~FF~ 391 (630)
.-|....+|.+|++.|.+++++||++-. +... +... | +.++|+.++. ..+||
T Consensus 29 ~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~-l~~~-------g--~~~~~~~~~~~~~~~~~~KP---- 94 (173)
T PRK06769 29 LFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQE-LKGF-------G--FDDIYLCPHKHGDGCECRKP---- 94 (173)
T ss_pred ECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHH-HHhC-------C--cCEEEECcCCCCCCCCCCCC----
Confidence 4588999999999999999999999742 2221 2211 1 2122211110 01122
Q ss_pred CCCCcEEeeCCCCcccccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhccccccCceEEeehH
Q 006817 392 MSHPLYEVVTGEGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICR 464 (630)
Q Consensus 392 ~~~pf~~v~~~~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDI~~sKk~~gWRT~aIVp 464 (630)
.-+......+.+|..-.+++||||.. .|+..++. .||++++|-+
T Consensus 95 ---------------------------~p~~~~~~~~~l~~~p~~~i~IGD~~-~Di~aA~~-aGi~~i~v~~ 138 (173)
T PRK06769 95 ---------------------------STGMLLQAAEKHGLDLTQCAVIGDRW-TDIVAAAK-VNATTILVRT 138 (173)
T ss_pred ---------------------------CHHHHHHHHHHcCCCHHHeEEEcCCH-HHHHHHHH-CCCeEEEEec
Confidence 01222345555777778999999997 89998875 6999999965
No 54
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=96.96 E-value=0.0016 Score=72.25 Aligned_cols=99 Identities=15% Similarity=0.097 Sum_probs=72.1
Q ss_pred ccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeeCCCC
Q 006817 325 EPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEG 404 (630)
Q Consensus 325 ~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A~KP~FF~~~~pf~~v~~~~g 404 (630)
..-|....+|..|++.|.++.++||+.-.++...++++ +|.+|||.|++.-.-+ +
T Consensus 330 ~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~---------~l~~~f~~i~~~d~v~----------------~ 384 (459)
T PRK06698 330 ALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYY---------DLDQWVTETFSIEQIN----------------S 384 (459)
T ss_pred CcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHC---------CcHhhcceeEecCCCC----------------C
Confidence 44588999999999999999999999999999999865 4899999988643100 0
Q ss_pred cccccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhccccccCceEEeehH
Q 006817 405 LMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICR 464 (630)
Q Consensus 405 ~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDI~~sKk~~gWRT~aIVp 464 (630)
. .|+.+| ....+- ...++++||||+. .|+...|. .|++|++|-.
T Consensus 385 ~-------~kP~~~-----~~al~~--l~~~~~v~VGDs~-~Di~aAk~-AG~~~I~v~~ 428 (459)
T PRK06698 385 L-------NKSDLV-----KSILNK--YDIKEAAVVGDRL-SDINAAKD-NGLIAIGCNF 428 (459)
T ss_pred C-------CCcHHH-----HHHHHh--cCcceEEEEeCCH-HHHHHHHH-CCCeEEEEeC
Confidence 0 001111 111111 2346899999997 99988865 6999999854
No 55
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=96.87 E-value=0.0021 Score=62.08 Aligned_cols=108 Identities=24% Similarity=0.323 Sum_probs=65.2
Q ss_pred cCCCchHHHHHHHHhCCeEEEEeCCCh----HHHH-------HhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCC
Q 006817 326 PDPELPLALLDQKEAGKKLLLITNSDY----HYTD-------KMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSH 394 (630)
Q Consensus 326 kdp~l~~~L~~lr~~GKKlFLiTNS~~----~Yt~-------~~M~Yl~~~~l~~g~dWrd~FDvVIv~A~KP~FF~~~~ 394 (630)
.-|....+|.+|++.|.++.++||++- .|+. .-+..++.. ..+ +||-|++...-+.
T Consensus 30 ~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~g~--~f~~i~~~~~~~~------ 96 (181)
T PRK08942 30 PIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSLAD-----RGG--RLDGIYYCPHHPE------ 96 (181)
T ss_pred ECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHH-----cCC--ccceEEECCCCCC------
Confidence 457889999999999999999999973 1221 112222321 112 4776664321100
Q ss_pred CcEEeeCCCCcccccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhccccccCceEEeehH
Q 006817 395 PLYEVVTGEGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICR 464 (630)
Q Consensus 395 pf~~v~~~~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDI~~sKk~~gWRT~aIVp 464 (630)
.+.+..+| ...+| ....+.+|....+++||||+. .||..++. .||++++|-.
T Consensus 97 ------~~~~~~KP-----~p~~~-----~~~~~~l~~~~~~~~~VgDs~-~Di~~A~~-aG~~~i~v~~ 148 (181)
T PRK08942 97 ------DGCDCRKP-----KPGML-----LSIAERLNIDLAGSPMVGDSL-RDLQAAAA-AGVTPVLVRT 148 (181)
T ss_pred ------CCCcCCCC-----CHHHH-----HHHHHHcCCChhhEEEEeCCH-HHHHHHHH-CCCeEEEEcC
Confidence 00011111 01122 245566788889999999997 59998875 6998888743
No 56
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=96.87 E-value=0.0012 Score=64.70 Aligned_cols=92 Identities=28% Similarity=0.406 Sum_probs=66.2
Q ss_pred CCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccE-EEEccCCCCCCCCCCCcEEeeCCCCc
Q 006817 327 DPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNM-VIVSARKPEFFQMSHPLYEVVTGEGL 405 (630)
Q Consensus 327 dp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDv-VIv~A~KP~FF~~~~pf~~v~~~~g~ 405 (630)
-|++..|+..+|++|-|+++++|-.=.=+.. |-.-||| -|-.|+||-
T Consensus 48 tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~---------------~~~~l~v~fi~~A~KP~----------------- 95 (175)
T COG2179 48 TPELRAWLAELKEAGIKVVVVSNNKESRVAR---------------AAEKLGVPFIYRAKKPF----------------- 95 (175)
T ss_pred CHHHHHHHHHHHhcCCEEEEEeCCCHHHHHh---------------hhhhcCCceeecccCcc-----------------
Confidence 4789999999999999999999954333322 3333333 245677771
Q ss_pred ccccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhccccccCceEEeehHh
Q 006817 406 MRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICRE 465 (630)
Q Consensus 406 l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDI~~sKk~~gWRT~aIVpE 465 (630)
+=......+-++..-++|+.|||.|+.||+..+. .|.||++|.|=
T Consensus 96 --------------~~~fr~Al~~m~l~~~~vvmVGDqL~TDVlggnr-~G~~tIlV~Pl 140 (175)
T COG2179 96 --------------GRAFRRALKEMNLPPEEVVMVGDQLFTDVLGGNR-AGMRTILVEPL 140 (175)
T ss_pred --------------HHHHHHHHHHcCCChhHEEEEcchhhhhhhcccc-cCcEEEEEEEe
Confidence 0011234555677889999999999999998875 79999999883
No 57
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=96.71 E-value=0.024 Score=58.02 Aligned_cols=111 Identities=22% Similarity=0.259 Sum_probs=76.0
Q ss_pred cccccccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEe
Q 006817 320 PELFVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEV 399 (630)
Q Consensus 320 pekYI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A~KP~FF~~~~pf~~v 399 (630)
|=.+|.+|+.|+.+|+.|+..+| .+-||++=.-+.++.+++ | =.|.||.||+- ...+|.
T Consensus 95 Plq~LkPD~~LRnlLL~l~~r~k--~~FTNa~k~HA~r~Lk~L-------G--ieDcFegii~~-------e~~np~--- 153 (244)
T KOG3109|consen 95 PLQDLKPDPVLRNLLLSLKKRRK--WIFTNAYKVHAIRILKKL-------G--IEDCFEGIICF-------ETLNPI--- 153 (244)
T ss_pred cHhhcCCCHHHHHHHHhCccccE--EEecCCcHHHHHHHHHHh-------C--hHHhccceeEe-------eccCCC---
Confidence 44568999999999999998874 667999999999999988 3 67899999963 222221
Q ss_pred eCCCCcccccccCCCCccccCCCHHHH---HHHhCCCCCcEEEEcCccccchhccccccCceEEeehHhh
Q 006817 400 VTGEGLMRPCFKARTGGLYSGGSAQMI---ENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICREL 466 (630)
Q Consensus 400 ~~~~g~l~~~~~l~~G~VYsgGn~~~l---~~llg~~G~~VLYfGDHIygDI~~sKk~~gWRT~aIVpEL 466 (630)
++ .+=+-=+...+ .+..|...++=.||=|.-..-|...|. .||+|++|-.|=
T Consensus 154 --~~------------~~vcKP~~~afE~a~k~agi~~p~~t~FfDDS~~NI~~ak~-vGl~tvlv~~~~ 208 (244)
T KOG3109|consen 154 --EK------------TVVCKPSEEAFEKAMKVAGIDSPRNTYFFDDSERNIQTAKE-VGLKTVLVGREH 208 (244)
T ss_pred --CC------------ceeecCCHHHHHHHHHHhCCCCcCceEEEcCchhhHHHHHh-ccceeEEEEeee
Confidence 11 11112223334 455677755444444555677887765 699999997653
No 58
>PRK11590 hypothetical protein; Provisional
Probab=96.69 E-value=0.053 Score=53.93 Aligned_cols=95 Identities=13% Similarity=0.053 Sum_probs=61.8
Q ss_pred ccCCCchHHH-HHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeeCCC
Q 006817 325 EPDPELPLAL-LDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGE 403 (630)
Q Consensus 325 ~kdp~l~~~L-~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A~KP~FF~~~~pf~~v~~~~ 403 (630)
..-|.....| ..+++.|.++.++|||+-.|+..++.++- |..-..+|=+ +. ++ ..+
T Consensus 95 ~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l~---------~~~~~~~i~t---~l----------~~-~~t 151 (211)
T PRK11590 95 TAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDTP---------WLPRVNLIAS---QM----------QR-RYG 151 (211)
T ss_pred cCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHcc---------ccccCceEEE---EE----------EE-EEc
Confidence 3467888888 46788899999999999999999998762 5443333322 22 11 123
Q ss_pred CcccccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchh
Q 006817 404 GLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVS 449 (630)
Q Consensus 404 g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDI~ 449 (630)
|.+.. ...|-.|=+..+.+.+|......-..|||+ +|+-
T Consensus 152 g~~~g------~~c~g~~K~~~l~~~~~~~~~~~~aY~Ds~-~D~p 190 (211)
T PRK11590 152 GWVLT------LRCLGHEKVAQLERKIGTPLRLYSGYSDSK-QDNP 190 (211)
T ss_pred cEECC------ccCCChHHHHHHHHHhCCCcceEEEecCCc-ccHH
Confidence 43321 224444555567777765555566779999 8875
No 59
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=96.62 E-value=0.0019 Score=59.72 Aligned_cols=84 Identities=20% Similarity=0.211 Sum_probs=62.3
Q ss_pred CCchHHHHHHHHhCCeEEEEeCC-ChHHHHHhhcccccccCCCC--CCCCCCccEEEEccCCCCCCCCCCCcEEeeCCCC
Q 006817 328 PELPLALLDQKEAGKKLLLITNS-DYHYTDKMMQHSFNRFLPND--MGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEG 404 (630)
Q Consensus 328 p~l~~~L~~lr~~GKKlFLiTNS-~~~Yt~~~M~Yl~~~~l~~g--~dWrd~FDvVIv~A~KP~FF~~~~pf~~v~~~~g 404 (630)
|.+..+|+.|+++|.++.++||+ .-.++..+++..-. .+ ..+.++||.+++...||.
T Consensus 32 ~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~~----~~~i~~l~~~f~~~~~~~~~pk---------------- 91 (128)
T TIGR01681 32 KEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFED----FGIIFPLAEYFDPLTIGYWLPK---------------- 91 (128)
T ss_pred HHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhccc----cccchhhHhhhhhhhhcCCCcH----------------
Confidence 57888999999999999999999 89999998876420 00 016889998887755531
Q ss_pred cccccccCCCCccccCCCHHHHHHHhC--CCCCcEEEEcCcccc
Q 006817 405 LMRPCFKARTGGLYSGGSAQMIENSLN--IHGDEILYVGDHIYT 446 (630)
Q Consensus 405 ~l~~~~~l~~G~VYsgGn~~~l~~llg--~~G~~VLYfGDHIyg 446 (630)
+.. .....+.+| +..++++||||....
T Consensus 92 ----------p~~-----~~~a~~~lg~~~~p~~~l~igDs~~n 120 (128)
T TIGR01681 92 ----------SPR-----LVEIALKLNGVLKPKSILFVDDRPDN 120 (128)
T ss_pred ----------HHH-----HHHHHHHhcCCCCcceEEEECCCHhH
Confidence 111 234566678 888999999998753
No 60
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=96.55 E-value=0.0058 Score=66.43 Aligned_cols=106 Identities=22% Similarity=0.293 Sum_probs=67.2
Q ss_pred cccCCCchHHHHHHHHhCCeEEEEeCC---------------ChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCC
Q 006817 324 VEPDPELPLALLDQKEAGKKLLLITNS---------------DYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPE 388 (630)
Q Consensus 324 I~kdp~l~~~L~~lr~~GKKlFLiTNS---------------~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A~KP~ 388 (630)
+...|.+..+|..|+++|.+++++||. +-.++..++... .+ +||.|+.....|
T Consensus 29 ~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~~~---------gl--~fd~i~i~~~~~- 96 (354)
T PRK05446 29 LAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFESQ---------GI--KFDEVLICPHFP- 96 (354)
T ss_pred ceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHHHHc---------CC--ceeeEEEeCCcC-
Confidence 556788999999999999999999995 122333333322 23 377776654333
Q ss_pred CCCCCCCcEEeeCCCCcccccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhccccccCceEEeehH
Q 006817 389 FFQMSHPLYEVVTGEGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICR 464 (630)
Q Consensus 389 FF~~~~pf~~v~~~~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDI~~sKk~~gWRT~aIVp 464 (630)
.+. .+.-+| .-+-+....+.++....+++||||.. +|+..++. .||++++|=|
T Consensus 97 --sd~---------~~~rKP----------~p~~l~~a~~~l~v~~~~svmIGDs~-sDi~aAk~-aGi~~I~v~~ 149 (354)
T PRK05446 97 --EDN---------CSCRKP----------KTGLVEEYLAEGAIDLANSYVIGDRE-TDVQLAEN-MGIKGIRYAR 149 (354)
T ss_pred --ccc---------CCCCCC----------CHHHHHHHHHHcCCCcccEEEEcCCH-HHHHHHHH-CCCeEEEEEC
Confidence 000 000011 01223344455677789999999985 89998875 6999999833
No 61
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=96.49 E-value=0.0067 Score=58.52 Aligned_cols=113 Identities=21% Similarity=0.226 Sum_probs=64.9
Q ss_pred cCCCchHHHHHHHHhCCeEEEEeCCCh----HHHHHh-------hcccccccCCCCCCCCCCccEEEEccCCCCCCCCCC
Q 006817 326 PDPELPLALLDQKEAGKKLLLITNSDY----HYTDKM-------MQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSH 394 (630)
Q Consensus 326 kdp~l~~~L~~lr~~GKKlFLiTNS~~----~Yt~~~-------M~Yl~~~~l~~g~dWrd~FDvVIv~A~KP~FF~~~~ 394 (630)
.-|.+..+|.+|+++|.++.++||++- .|+... |..++. ..+-. ||.|+....-|.- .
T Consensus 27 ~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l~------~~~~~-~~~i~~~~~~~~~----~ 95 (176)
T TIGR00213 27 FIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEWMDWSLA------ERDVD-LDGIYYCPHHPEG----V 95 (176)
T ss_pred ECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHH------HcCCC-ccEEEECCCCCcc----c
Confidence 357899999999999999999999983 233221 111221 11112 6666554322100 0
Q ss_pred CcEEeeCCCCcccccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhccccccCceEEeeh
Q 006817 395 PLYEVVTGEGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 463 (630)
Q Consensus 395 pf~~v~~~~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDI~~sKk~~gWRT~aIV 463 (630)
+ ++..+.+..+| +..+ +....+.+|....+++||||.. .||...+. .||+|+..|
T Consensus 96 ~--~~~~~~~~~KP-----~p~~-----~~~a~~~~~~~~~~~v~VGDs~-~Di~aA~~-aG~~~~i~v 150 (176)
T TIGR00213 96 E--EFRQVCDCRKP-----KPGM-----LLQARKELHIDMAQSYMVGDKL-EDMQAGVA-AKVKTNVLV 150 (176)
T ss_pred c--cccCCCCCCCC-----CHHH-----HHHHHHHcCcChhhEEEEcCCH-HHHHHHHH-CCCcEEEEE
Confidence 0 00000011111 1122 2355666788889999999986 69997775 699995444
No 62
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=96.47 E-value=0.0059 Score=59.14 Aligned_cols=103 Identities=18% Similarity=0.300 Sum_probs=64.5
Q ss_pred CcccccccCCCchHHHHHHHHhCCeEEEEeCCChH------------HHHHhhcccccccCCCCCCCCCCccEEEEccCC
Q 006817 319 KPELFVEPDPELPLALLDQKEAGKKLLLITNSDYH------------YTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARK 386 (630)
Q Consensus 319 npekYI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~------------Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A~K 386 (630)
+|++....-|.+..+|.+|+++|.++.++||.+-. .+..+++.+ | +. +|.+|+.. .
T Consensus 36 ~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~-------g--l~--~~~ii~~~-~ 103 (166)
T TIGR01664 36 SASDWRFLYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKL-------K--VP--IQVLAATH-A 103 (166)
T ss_pred ChHHeEEecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHc-------C--CC--EEEEEecC-C
Confidence 45555444578999999999999999999998753 344445543 2 32 24444432 1
Q ss_pred CCCCCCCCCcEEeeCCCCcccccccCCCCccccCCCHHHHHHHhC--CCCCcEEEEcCcc-------ccchhccccccCc
Q 006817 387 PEFFQMSHPLYEVVTGEGLMRPCFKARTGGLYSGGSAQMIENSLN--IHGDEILYVGDHI-------YTDVSQSKVHLRW 457 (630)
Q Consensus 387 P~FF~~~~pf~~v~~~~g~l~~~~~l~~G~VYsgGn~~~l~~llg--~~G~~VLYfGDHI-------ygDI~~sKk~~gW 457 (630)
... . +| ..+....+.+.+| ....+++||||.. -.|+..++. .|+
T Consensus 104 -~~~-------------~--KP----------~p~~~~~~~~~~~~~~~~~~~v~VGD~~~~~~~~~~~Di~aA~~-aGi 156 (166)
T TIGR01664 104 -GLY-------------R--KP----------MTGMWEYLQSQYNSPIKMTRSFYVGDAAGRKLDFSDADIKFAKN-LGL 156 (166)
T ss_pred -CCC-------------C--CC----------ccHHHHHHHHHcCCCCCchhcEEEECCCCCCCCCchhHHHHHHH-CCC
Confidence 000 0 00 0122334555566 7778999999986 389998875 577
Q ss_pred eEE
Q 006817 458 RTA 460 (630)
Q Consensus 458 RT~ 460 (630)
.++
T Consensus 157 ~~~ 159 (166)
T TIGR01664 157 EFK 159 (166)
T ss_pred CcC
Confidence 764
No 63
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=96.19 E-value=0.12 Score=55.60 Aligned_cols=106 Identities=14% Similarity=0.162 Sum_probs=65.7
Q ss_pred cccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeeCCC
Q 006817 324 VEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGE 403 (630)
Q Consensus 324 I~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A~KP~FF~~~~pf~~v~~~~ 403 (630)
+...|....+|..|++.|.++.++||+...|++.++..+ + +|-++.+ .+++. .
T Consensus 180 l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~L-g------------ld~~~an------------~lei~--d 232 (322)
T PRK11133 180 LPLMPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKL-R------------LDAAVAN------------ELEIM--D 232 (322)
T ss_pred CCCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHc-C------------CCeEEEe------------EEEEE--C
Confidence 345678889999999999999999999999988877753 2 1222221 11221 2
Q ss_pred CcccccccCCCCccccCCCHHHH---HHHhCCCCCcEEEEcCccccchhccccccCceEE
Q 006817 404 GLMRPCFKARTGGLYSGGSAQMI---ENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTA 460 (630)
Q Consensus 404 g~l~~~~~l~~G~VYsgGn~~~l---~~llg~~G~~VLYfGDHIygDI~~sKk~~gWRT~ 460 (630)
|.+... .....+...+....+ .+-+|....++++|||.. .|+.-.+. .|.-.+
T Consensus 233 g~ltg~--v~g~iv~~k~K~~~L~~la~~lgi~~~qtIaVGDg~-NDl~m~~~-AGlgiA 288 (322)
T PRK11133 233 GKLTGN--VLGDIVDAQYKADTLTRLAQEYEIPLAQTVAIGDGA-NDLPMIKA-AGLGIA 288 (322)
T ss_pred CEEEeE--ecCccCCcccHHHHHHHHHHHcCCChhhEEEEECCH-HHHHHHHH-CCCeEE
Confidence 222110 000012233445444 445677778999999999 89987654 466443
No 64
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=96.16 E-value=0.0016 Score=67.07 Aligned_cols=101 Identities=14% Similarity=0.099 Sum_probs=67.7
Q ss_pred CchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEcc-CCCCCCCCCCCcEEeeCCCCccc
Q 006817 329 ELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSA-RKPEFFQMSHPLYEVVTGEGLMR 407 (630)
Q Consensus 329 ~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A-~KP~FF~~~~pf~~v~~~~g~l~ 407 (630)
.+...+..|++.|+++|+.||.+-.|....... ..+-.+|+.|.... .+|.++....
T Consensus 124 ~l~~a~~~L~~~~~~~~iatn~~~~~~~~~~~~---------~g~g~~~~~i~~~~~~~~~~~gKP~------------- 181 (257)
T TIGR01458 124 ILNQAFRLLLDGAKPLLIAIGKGRYYKRKDGLA---------LDVGPFVTALEYATDTKATVVGKPS------------- 181 (257)
T ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCcCCCCCC---------CCchHHHHHHHHHhCCCceeecCCC-------------
Confidence 455566777788899999999998887654432 23677888776432 2332221111
Q ss_pred ccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhccccccCceEEeehH
Q 006817 408 PCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICR 464 (630)
Q Consensus 408 ~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDI~~sKk~~gWRT~aIVp 464 (630)
..+| ....+.+|....++++|||++..||.-.+. .||+|++|..
T Consensus 182 -------p~~~-----~~~~~~~~~~~~~~~~vGD~~~~Di~~a~~-~G~~~i~v~~ 225 (257)
T TIGR01458 182 -------KTFF-----LEALRATGCEPEEAVMIGDDCRDDVGGAQD-CGMRGIQVRT 225 (257)
T ss_pred -------HHHH-----HHHHHHhCCChhhEEEECCCcHHHHHHHHH-cCCeEEEECC
Confidence 1122 123444577788999999999999998875 6999999953
No 65
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=96.12 E-value=0.026 Score=54.17 Aligned_cols=109 Identities=17% Similarity=0.145 Sum_probs=69.5
Q ss_pred ccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeeCCCC
Q 006817 325 EPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEG 404 (630)
Q Consensus 325 ~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A~KP~FF~~~~pf~~v~~~~g 404 (630)
...|....+|..|+++|.+++++||+.-.++..++..+ | ...+|+.++.... -+++.. .+....
T Consensus 80 ~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~-------g--~~~~~~~~~~~~~-~g~~~p-~~~~~~----- 143 (201)
T TIGR01491 80 SLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKL-------N--PDYVYSNELVFDE-KGFIQP-DGIVRV----- 143 (201)
T ss_pred CCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHh-------C--CCeEEEEEEEEcC-CCeEec-ceeeEE-----
Confidence 34678899999999999999999999999999999876 2 4456765554321 111110 011000
Q ss_pred cccccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhccccccCceEEe
Q 006817 405 LMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTAL 461 (630)
Q Consensus 405 ~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDI~~sKk~~gWRT~a 461 (630)
. ...++ .-...+.+.+|....+++||||+. .|+-..+. .||..++
T Consensus 144 --~---~~~k~-----~~~~~~~~~~~~~~~~~i~iGDs~-~D~~~a~~-ag~~~a~ 188 (201)
T TIGR01491 144 --T---FDNKG-----EAVERLKRELNPSLTETVAVGDSK-NDLPMFEV-ADISISL 188 (201)
T ss_pred --c---cccHH-----HHHHHHHHHhCCCHHHEEEEcCCH-hHHHHHHh-cCCeEEE
Confidence 0 00001 112344555677778999999994 69987765 5885544
No 66
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=96.02 E-value=0.017 Score=54.52 Aligned_cols=87 Identities=14% Similarity=0.070 Sum_probs=61.8
Q ss_pred ccccccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEcc----CCCCCCCCCCCc
Q 006817 321 ELFVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSA----RKPEFFQMSHPL 396 (630)
Q Consensus 321 ekYI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A----~KP~FF~~~~pf 396 (630)
.-++..-|.+..+|..|+ .|.++.+.||+.-+|+..+++.+ +..| .+||.|+... .||.
T Consensus 41 ~~~v~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~~~~~il~~l-------~~~~-~~f~~i~~~~d~~~~KP~-------- 103 (148)
T smart00577 41 GVYVKKRPGVDEFLKRAS-ELFELVVFTAGLRMYADPVLDLL-------DPKK-YFGYRRLFRDECVFVKGK-------- 103 (148)
T ss_pred EEEEEECCCHHHHHHHHH-hccEEEEEeCCcHHHHHHHHHHh-------CcCC-CEeeeEEECccccccCCe--------
Confidence 344556789999999998 57899999999999999999876 2333 5679887754 2332
Q ss_pred EEeeCCCCcccccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhcc
Q 006817 397 YEVVTGEGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQS 451 (630)
Q Consensus 397 ~~v~~~~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDI~~s 451 (630)
| ..-.+.+|....+++||||.. .|+...
T Consensus 104 ---------------------~-----~k~l~~l~~~p~~~i~i~Ds~-~~~~aa 131 (148)
T smart00577 104 ---------------------Y-----VKDLSLLGRDLSNVIIIDDSP-DSWPFH 131 (148)
T ss_pred ---------------------E-----eecHHHcCCChhcEEEEECCH-HHhhcC
Confidence 0 011344577788999999997 444433
No 67
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=95.32 E-value=0.19 Score=50.69 Aligned_cols=102 Identities=18% Similarity=0.272 Sum_probs=72.9
Q ss_pred ccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeeCCCC
Q 006817 325 EPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEG 404 (630)
Q Consensus 325 ~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A~KP~FF~~~~pf~~v~~~~g 404 (630)
..-|.+..+|..|++.|.++-+.|||+-.-+..+++-+ .=.+|||.+|+.+.=+ .+
T Consensus 86 ~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~---------gl~~~f~~~v~~~dv~---------------~~ 141 (221)
T COG0637 86 KPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARL---------GLLDYFDVIVTADDVA---------------RG 141 (221)
T ss_pred CCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHc---------cChhhcchhccHHHHh---------------cC
Confidence 34578899999999999999999999988888887643 2467999988765321 11
Q ss_pred cccccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhccccccCceEEeehH
Q 006817 405 LMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICR 464 (630)
Q Consensus 405 ~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDI~~sKk~~gWRT~aIVp 464 (630)
+| .+-+|- .-.+.+|....+++.|.|...|=. +-+..|-+++.|..
T Consensus 142 --KP-----~Pd~yL-----~Aa~~Lgv~P~~CvviEDs~~Gi~--Aa~aAGm~vv~v~~ 187 (221)
T COG0637 142 --KP-----APDIYL-----LAAERLGVDPEECVVVEDSPAGIQ--AAKAAGMRVVGVPA 187 (221)
T ss_pred --CC-----CCHHHH-----HHHHHcCCChHHeEEEecchhHHH--HHHHCCCEEEEecC
Confidence 11 122331 235667888899999999998833 33457999998864
No 68
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=95.23 E-value=0.12 Score=48.87 Aligned_cols=51 Identities=20% Similarity=0.345 Sum_probs=43.2
Q ss_pred cccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEc
Q 006817 324 VEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVS 383 (630)
Q Consensus 324 I~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~ 383 (630)
+...|.+..+|..|++.|-++.++||+.-.++..+++.+ +|.++||.|++.
T Consensus 71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~---------~l~~~f~~i~~~ 121 (188)
T TIGR01489 71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGI---------GEKDVFIEIYSN 121 (188)
T ss_pred CCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHc---------CChhheeEEecc
Confidence 445677889999999999999999999999999988754 388999998853
No 69
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=95.18 E-value=0.0059 Score=63.30 Aligned_cols=37 Identities=27% Similarity=0.355 Sum_probs=31.5
Q ss_pred HHHHhCCCCCcEEEEcCccccchhccccccCceEEeeh
Q 006817 426 IENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 463 (630)
Q Consensus 426 l~~llg~~G~~VLYfGDHIygDI~~sKk~~gWRT~aIV 463 (630)
..+.+|....++++|||.+..||.-.+. .||+|++|-
T Consensus 211 ~~~~~~~~~~~~lmIGD~~~tDI~~A~~-aGi~si~V~ 247 (279)
T TIGR01452 211 ITENFSIDPARTLMVGDRLETDILFGHR-CGMTTVLVL 247 (279)
T ss_pred HHHHhCCChhhEEEECCChHHHHHHHHH-cCCcEEEEC
Confidence 4555677788999999999999998875 699999994
No 70
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=94.80 E-value=0.071 Score=52.44 Aligned_cols=105 Identities=15% Similarity=0.118 Sum_probs=66.7
Q ss_pred cccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeeCCC
Q 006817 324 VEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGE 403 (630)
Q Consensus 324 I~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A~KP~FF~~~~pf~~v~~~~ 403 (630)
+...|....+|..++++|.++.++||+.-.++..++..+ + +..+|+..+... ++. + +
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~-~--------i~~~~~~~~~~~-------~~~-~------~ 140 (219)
T TIGR00338 84 LPLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKL-G--------LDAAFANRLEVE-------DGK-L------T 140 (219)
T ss_pred CCcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHc-C--------CCceEeeEEEEE-------CCE-E------E
Confidence 346788999999999999999999999999999888765 1 344665433221 000 0 0
Q ss_pred CcccccccCCCCccccCCCHHHH---HHHhCCCCCcEEEEcCccccchhccccccCceE
Q 006817 404 GLMRPCFKARTGGLYSGGSAQMI---ENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRT 459 (630)
Q Consensus 404 g~l~~~~~l~~G~VYsgGn~~~l---~~llg~~G~~VLYfGDHIygDI~~sKk~~gWRT 459 (630)
|.... ..++..+....+ ++.++....+++||||. .+|+...+. .|+..
T Consensus 141 ~~~~~------~~~~~~~k~~~~~~~~~~~~~~~~~~i~iGDs-~~Di~aa~~-ag~~i 191 (219)
T TIGR00338 141 GLVEG------PIVDASYKGKTLLILLRKEGISPENTVAVGDG-ANDLSMIKA-AGLGI 191 (219)
T ss_pred EEecC------cccCCcccHHHHHHHHHHcCCCHHHEEEEECC-HHHHHHHHh-CCCeE
Confidence 00000 001111233333 34456667799999999 599987665 58865
No 71
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=94.74 E-value=0.074 Score=54.87 Aligned_cols=98 Identities=11% Similarity=0.103 Sum_probs=62.0
Q ss_pred ccccccCCCchHHHHHHHHhCCeEEEEeCC----ChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCc
Q 006817 321 ELFVEPDPELPLALLDQKEAGKKLLLITNS----DYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPL 396 (630)
Q Consensus 321 ekYI~kdp~l~~~L~~lr~~GKKlFLiTNS----~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A~KP~FF~~~~pf 396 (630)
+....+-+....+|..++++|.++|++||. .=.+++.+++++- +.++|++|+..-.-+.
T Consensus 110 ~~~s~p~~~a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~lG---------i~~~f~~i~~~d~~~~-------- 172 (237)
T TIGR01672 110 DEFSIPKEVARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNFH---------IPAMNPVIFAGDKPGQ-------- 172 (237)
T ss_pred ccCCcchhHHHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHhC---------CchheeEEECCCCCCC--------
Confidence 333334444888999999999999999998 5557777776552 5679987755321100
Q ss_pred EEeeCCCCcccccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhccccccCceEEeeh
Q 006817 397 YEVVTGEGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 463 (630)
Q Consensus 397 ~~v~~~~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDI~~sKk~~gWRT~aIV 463 (630)
.++ .. ....+-.| -++||||++ .||...+. .|-++++|.
T Consensus 173 ---------~Kp------~~-------~~~l~~~~----i~i~vGDs~-~DI~aAk~-AGi~~I~V~ 211 (237)
T TIGR01672 173 ---------YQY------TK-------TQWIQDKN----IRIHYGDSD-NDITAAKE-AGARGIRIL 211 (237)
T ss_pred ---------CCC------CH-------HHHHHhCC----CeEEEeCCH-HHHHHHHH-CCCCEEEEE
Confidence 000 00 00111112 179999999 89976654 689988874
No 72
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=94.66 E-value=0.14 Score=54.02 Aligned_cols=37 Identities=30% Similarity=0.417 Sum_probs=29.9
Q ss_pred HHHhCCCCCcEEEEcCccccchhccccccCceEEeehH
Q 006817 427 ENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICR 464 (630)
Q Consensus 427 ~~llg~~G~~VLYfGDHIygDI~~sKk~~gWRT~aIVp 464 (630)
.+.++...+++|-|||.+.+||.-.+. .||.|++|.-
T Consensus 200 l~~~~~~~~~~~mVGD~~~TDI~~a~~-~G~~t~LV~T 236 (269)
T COG0647 200 LEKLGLDRSEVLMVGDRLDTDILGAKA-AGLDTLLVLT 236 (269)
T ss_pred HHHhCCCcccEEEEcCCchhhHHHHHH-cCCCEEEEcc
Confidence 334455557999999999999998875 6999999953
No 73
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=94.62 E-value=0.12 Score=50.95 Aligned_cols=89 Identities=24% Similarity=0.311 Sum_probs=59.0
Q ss_pred CCCchHHHHHHHHhCC--eEEEEeCCC-------hHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcE
Q 006817 327 DPELPLALLDQKEAGK--KLLLITNSD-------YHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLY 397 (630)
Q Consensus 327 dp~l~~~L~~lr~~GK--KlFLiTNS~-------~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A~KP~FF~~~~pf~ 397 (630)
.|++..+|.++++.+. ++.+++||- ..-+..+-+-+ | ..++.-.|+||
T Consensus 61 ~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~l-------g------Ipvl~h~~kKP---------- 117 (168)
T PF09419_consen 61 PPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKAL-------G------IPVLRHRAKKP---------- 117 (168)
T ss_pred CHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhh-------C------CcEEEeCCCCC----------
Confidence 4678889999998864 699999993 44444443322 1 44555667777
Q ss_pred EeeCCCCcccccccCCCCccccCCCHHHHHHHhCC-----CCCcEEEEcCccccchhccccccCceEEee
Q 006817 398 EVVTGEGLMRPCFKARTGGLYSGGSAQMIENSLNI-----HGDEILYVGDHIYTDVSQSKVHLRWRTALI 462 (630)
Q Consensus 398 ~v~~~~g~l~~~~~l~~G~VYsgGn~~~l~~llg~-----~G~~VLYfGDHIygDI~~sKk~~gWRT~aI 462 (630)
|+...+.+.++. +-+++..|||.++.||+-... .|-.|++|
T Consensus 118 -----------------------~~~~~i~~~~~~~~~~~~p~eiavIGDrl~TDVl~gN~-~G~~tilv 163 (168)
T PF09419_consen 118 -----------------------GCFREILKYFKCQKVVTSPSEIAVIGDRLFTDVLMGNR-MGSYTILV 163 (168)
T ss_pred -----------------------ccHHHHHHHHhhccCCCCchhEEEEcchHHHHHHHhhc-cCceEEEE
Confidence 222233333332 257899999999999998876 57556654
No 74
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=94.59 E-value=0.045 Score=58.11 Aligned_cols=86 Identities=20% Similarity=0.264 Sum_probs=66.1
Q ss_pred CCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcc---cccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeeCCCC
Q 006817 328 PELPLALLDQKEAGKKLLLITNSDYHYTDKMMQH---SFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEG 404 (630)
Q Consensus 328 p~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Y---l~~~~l~~g~dWrd~FDvVIv~A~KP~FF~~~~pf~~v~~~~g 404 (630)
|.+..+|.+|++.|.++.++||.+...+..+++. +++ ..++||.|+.. .||
T Consensus 34 ~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~~~~~~~--------~~~~f~~~~~~-~~p----------------- 87 (320)
T TIGR01686 34 KTLQEKIKTLKKQGFLLALASKNDEDDAKKVFERRKDFIL--------QAEDFDARSIN-WGP----------------- 87 (320)
T ss_pred HHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHhCccccC--------cHHHeeEEEEe-cCc-----------------
Confidence 5688899999999999999999999999999986 222 56889988665 333
Q ss_pred cccccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhccccc
Q 006817 405 LMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVH 454 (630)
Q Consensus 405 ~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDI~~sKk~ 454 (630)
..-+...+.+-+|..-.+++||||+.+ |+...+..
T Consensus 88 --------------k~~~i~~~~~~l~i~~~~~vfidD~~~-d~~~~~~~ 122 (320)
T TIGR01686 88 --------------KSESLRKIAKKLNLGTDSFLFIDDNPA-ERANVKIT 122 (320)
T ss_pred --------------hHHHHHHHHHHhCCCcCcEEEECCCHH-HHHHHHHH
Confidence 122344566667888889999999987 77766653
No 75
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=94.41 E-value=0.02 Score=54.23 Aligned_cols=84 Identities=19% Similarity=0.334 Sum_probs=57.2
Q ss_pred cCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeeCCCCc
Q 006817 326 PDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEGL 405 (630)
Q Consensus 326 kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A~KP~FF~~~~pf~~v~~~~g~ 405 (630)
.-|....+|. ++.++||++-.+....+..+ ...++||.||+.-. .|.
T Consensus 91 ~~~g~~~~L~-------~~~i~Tn~~~~~~~~~l~~~---------~l~~~fd~v~~~~~-----------------~~~ 137 (175)
T TIGR01493 91 PWPDSAAALA-------RVAILSNASHWAFDQFAQQA---------GLPWYFDRAFSVDT-----------------VRA 137 (175)
T ss_pred CCCchHHHHH-------HHhhhhCCCHHHHHHHHHHC---------CCHHHHhhhccHhh-----------------cCC
Confidence 4567777776 37899999999999988765 27889998764321 011
Q ss_pred ccccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhcccc
Q 006817 406 MRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKV 453 (630)
Q Consensus 406 l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDI~~sKk 453 (630)
.+| ...+| ....+.+|....+++|||||. .||..+++
T Consensus 138 ~KP-----~p~~f-----~~~~~~~~~~p~~~l~vgD~~-~Di~~A~~ 174 (175)
T TIGR01493 138 YKP-----DPVVY-----ELVFDTVGLPPDRVLMVAAHQ-WDLIGARK 174 (175)
T ss_pred CCC-----CHHHH-----HHHHHHHCCCHHHeEeEecCh-hhHHHHhc
Confidence 111 12233 244566688889999999994 79987764
No 76
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=94.26 E-value=0.21 Score=49.67 Aligned_cols=40 Identities=10% Similarity=0.040 Sum_probs=36.0
Q ss_pred cccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccc
Q 006817 324 VEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSF 363 (630)
Q Consensus 324 I~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~ 363 (630)
+...|....+|..++++|.+++++||+.-.|+..+++.++
T Consensus 73 ~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~ 112 (219)
T PRK09552 73 AEIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGLI 112 (219)
T ss_pred CCcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHhC
Confidence 4567889999999999999999999999999999998764
No 77
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=94.00 E-value=0.07 Score=51.34 Aligned_cols=82 Identities=26% Similarity=0.426 Sum_probs=61.6
Q ss_pred CCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccC--CCCCCCCCCCcEEeeCCCC
Q 006817 327 DPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSAR--KPEFFQMSHPLYEVVTGEG 404 (630)
Q Consensus 327 dp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A~--KP~FF~~~~pf~~v~~~~g 404 (630)
-|+...+|..|++.|.++.++|+.+...+..+.+.+ | ++|.+|..-. ||.
T Consensus 129 ~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~l-g-----------i~~~~v~a~~~~kP~---------------- 180 (215)
T PF00702_consen 129 RPGAKEALQELKEAGIKVAILTGDNESTASAIAKQL-G-----------IFDSIVFARVIGKPE---------------- 180 (215)
T ss_dssp HTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHT-T-----------SCSEEEEESHETTTH----------------
T ss_pred hhhhhhhhhhhhccCcceeeeecccccccccccccc-c-----------ccccccccccccccc----------------
Confidence 478999999999999999999999999999999965 2 2444333332 320
Q ss_pred cccccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhccc
Q 006817 405 LMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSK 452 (630)
Q Consensus 405 ~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDI~~sK 452 (630)
.++| ..+.+.++..+.+|+||||.+ .|+...|
T Consensus 181 ----------~k~~-----~~~i~~l~~~~~~v~~vGDg~-nD~~al~ 212 (215)
T PF00702_consen 181 ----------PKIF-----LRIIKELQVKPGEVAMVGDGV-NDAPALK 212 (215)
T ss_dssp ----------HHHH-----HHHHHHHTCTGGGEEEEESSG-GHHHHHH
T ss_pred ----------chhH-----HHHHHHHhcCCCEEEEEccCH-HHHHHHH
Confidence 1111 466777898888999999999 9987655
No 78
>PHA02597 30.2 hypothetical protein; Provisional
Probab=93.96 E-value=0.17 Score=49.14 Aligned_cols=101 Identities=11% Similarity=0.102 Sum_probs=64.3
Q ss_pred cccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhccc-ccccCCCCCCCCCCccEEEEccC-CCCCCCCCCCcEEeeC
Q 006817 324 VEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHS-FNRFLPNDMGWRDLFNMVIVSAR-KPEFFQMSHPLYEVVT 401 (630)
Q Consensus 324 I~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl-~~~~l~~g~dWrd~FDvVIv~A~-KP~FF~~~~pf~~v~~ 401 (630)
+..-|....+|.+|++.++ ++++||..-.........+ +. .-|.++|+.||+... ||. |
T Consensus 73 ~~~~pG~~e~L~~L~~~~~-~~i~Tn~~~~~~~~~~~~~~l~------~~f~~~f~~i~~~~~~~~k------p------ 133 (197)
T PHA02597 73 LSAYDDALDVINKLKEDYD-FVAVTALGDSIDALLNRQFNLN------ALFPGAFSEVLMCGHDESK------E------ 133 (197)
T ss_pred ccCCCCHHHHHHHHHhcCC-EEEEeCCccchhHHHHhhCCHH------HhCCCcccEEEEeccCccc------H------
Confidence 3456788999999998875 6888997766665444433 11 224457777765433 220 0
Q ss_pred CCCcccccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhcccccc-CceEEeehHh
Q 006817 402 GEGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHL-RWRTALICRE 465 (630)
Q Consensus 402 ~~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDI~~sKk~~-gWRT~aIVpE 465 (630)
.+ .....+.+| ..+++||||...+ +..++... |+.|+.+-..
T Consensus 134 --------------~~-----~~~a~~~~~--~~~~v~vgDs~~d-i~aA~~a~~Gi~~i~~~~~ 176 (197)
T PHA02597 134 --------------KL-----FIKAKEKYG--DRVVCFVDDLAHN-LDAAHEALSQLPVIHMLRG 176 (197)
T ss_pred --------------HH-----HHHHHHHhC--CCcEEEeCCCHHH-HHHHHHHHcCCcEEEecch
Confidence 01 123344445 4569999999988 77776533 9999999655
No 79
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=93.59 E-value=0.067 Score=52.38 Aligned_cols=109 Identities=17% Similarity=0.196 Sum_probs=74.3
Q ss_pred HHhccchhhhHHHHH-cCcccccccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEE
Q 006817 303 LFRAHVEGQLKSEIM-SKPELFVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVI 381 (630)
Q Consensus 303 v~~vH~~G~lk~~v~-~npekYI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVI 381 (630)
+|-|+.+|+++=.-. +.+.+|=.+|. .-+.+|++.|.++.++||.+..+++..++.+- +.++|+.+
T Consensus 14 ~dGv~tdg~~~~~~~g~~~~~~~~~D~---~~~~~L~~~Gi~laIiT~k~~~~~~~~l~~lg---------i~~~f~~~- 80 (169)
T TIGR02726 14 VDGVMTDGRIVINDEGIESRNFDIKDG---MGVIVLQLCGIDVAIITSKKSGAVRHRAEELK---------IKRFHEGI- 80 (169)
T ss_pred CceeeECCeEEEcCCCcEEEEEecchH---HHHHHHHHCCCEEEEEECCCcHHHHHHHHHCC---------CcEEEecC-
Confidence 567777776531111 11444444443 45778889999999999999999999999882 66777632
Q ss_pred EccCCCCCCCCCCCcEEeeCCCCcccccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhccccccCceEEe
Q 006817 382 VSARKPEFFQMSHPLYEVVTGEGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTAL 461 (630)
Q Consensus 382 v~A~KP~FF~~~~pf~~v~~~~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDI~~sKk~~gWRT~a 461 (630)
|| +.. ....+.+.+|....+++||||.. .|+.-.+. .|+.-+.
T Consensus 81 ----kp--------------------------kp~-----~~~~~~~~l~~~~~ev~~iGD~~-nDi~~~~~-ag~~~am 123 (169)
T TIGR02726 81 ----KK--------------------------KTE-----PYAQMLEEMNISDAEVCYVGDDL-VDLSMMKR-VGLAVAV 123 (169)
T ss_pred ----CC--------------------------CHH-----HHHHHHHHcCcCHHHEEEECCCH-HHHHHHHH-CCCeEEC
Confidence 11 000 23456666788888999999997 79987765 5766544
No 80
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=93.35 E-value=0.032 Score=56.54 Aligned_cols=100 Identities=17% Similarity=0.115 Sum_probs=61.0
Q ss_pred CCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeeCCCCccc
Q 006817 328 PELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEGLMR 407 (630)
Q Consensus 328 p~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A~KP~FF~~~~pf~~v~~~~g~l~ 407 (630)
|.+..+|..+++.|.++ ++||.+..|....+..+ +.-.+|+.+...+.+|.+. |+..
T Consensus 141 ~~~~~~l~~l~~~g~~~-i~tN~d~~~~~~~~~~~---------~~g~~~~~i~~~g~~~~~~-------------gKP~ 197 (242)
T TIGR01459 141 DEFDELFAPIVARKIPN-ICANPDRGINQHGIYRY---------GAGYYAELIKQLGGKVIYS-------------GKPY 197 (242)
T ss_pred HHHHHHHHHHHhCCCcE-EEECCCEeccCCCceEe---------cccHHHHHHHHhCCcEecC-------------CCCC
Confidence 34556677777788874 89999999987665432 1234565442222233111 1100
Q ss_pred ccccCCCCccccCCCHHHHHHHhCCC-CCcEEEEcCccccchhccccccCceEEeeh
Q 006817 408 PCFKARTGGLYSGGSAQMIENSLNIH-GDEILYVGDHIYTDVSQSKVHLRWRTALIC 463 (630)
Q Consensus 408 ~~~~l~~G~VYsgGn~~~l~~llg~~-G~~VLYfGDHIygDI~~sKk~~gWRT~aIV 463 (630)
..+ .....+.+|.. ..+++||||.+..||.-.+. .||+|++|.
T Consensus 198 -------~~~-----~~~~~~~~~~~~~~~~~~vGD~~~~Di~~a~~-~G~~~i~v~ 241 (242)
T TIGR01459 198 -------PAI-----FHKALKECSNIPKNRMLMVGDSFYTDILGANR-LGIDTALVL 241 (242)
T ss_pred -------HHH-----HHHHHHHcCCCCcccEEEECCCcHHHHHHHHH-CCCeEEEEe
Confidence 011 12334445544 35899999999999998875 699999873
No 81
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=93.18 E-value=0.064 Score=51.05 Aligned_cols=83 Identities=12% Similarity=0.167 Sum_probs=58.8
Q ss_pred HHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeeCCCCcccccccC
Q 006817 333 ALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEGLMRPCFKA 412 (630)
Q Consensus 333 ~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A~KP~FF~~~~pf~~v~~~~g~l~~~~~l 412 (630)
.+.+|+++|.+++++||.+...+..++..+ | +.++|+- .||
T Consensus 36 ~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~-------g--i~~~~~~-----~~~------------------------- 76 (154)
T TIGR01670 36 GIRCALKSGIEVAIITGRKAKLVEDRCKTL-------G--ITHLYQG-----QSN------------------------- 76 (154)
T ss_pred HHHHHHHCCCEEEEEECCCCHHHHHHHHHc-------C--CCEEEec-----ccc-------------------------
Confidence 689999999999999999999998887765 2 4455541 111
Q ss_pred CCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhccccccCceEEeeh
Q 006817 413 RTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 463 (630)
Q Consensus 413 ~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDI~~sKk~~gWRT~aIV 463 (630)
+. --...+++.+|....+++||||.. .|+.-.+.. |- +++|-
T Consensus 77 -k~-----~~~~~~~~~~~~~~~~~~~vGDs~-~D~~~~~~a-g~-~~~v~ 118 (154)
T TIGR01670 77 -KL-----IAFSDILEKLALAPENVAYIGDDL-IDWPVMEKV-GL-SVAVA 118 (154)
T ss_pred -hH-----HHHHHHHHHcCCCHHHEEEECCCH-HHHHHHHHC-CC-eEecC
Confidence 01 112455666788888999999997 899877653 44 36664
No 82
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=93.03 E-value=0.19 Score=48.71 Aligned_cols=107 Identities=13% Similarity=0.172 Sum_probs=63.8
Q ss_pred CCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeeCCCCcc
Q 006817 327 DPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEGLM 406 (630)
Q Consensus 327 dp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A~KP~FF~~~~pf~~v~~~~g~l 406 (630)
.|....+|.+++++|.++.++|||+-.++..+++++ | +..+|...+.. .++|..
T Consensus 89 ~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~l-g--------~~~~~~~~l~~-----------------~~~g~~ 142 (202)
T TIGR01490 89 YPEARDLIRWHKAEGHTIVLVSASLTILVKPLARIL-G--------IDNAIGTRLEE-----------------SEDGIY 142 (202)
T ss_pred cHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHc-C--------CcceEecceEE-----------------cCCCEE
Confidence 456778889999999999999999999999999865 1 44555441111 011111
Q ss_pred cccccCCCCccccCCCHHHHHHHh---CCCCCcEEEEcCccccchhccccccCceEEeehH
Q 006817 407 RPCFKARTGGLYSGGSAQMIENSL---NIHGDEILYVGDHIYTDVSQSKVHLRWRTALICR 464 (630)
Q Consensus 407 ~~~~~l~~G~VYsgGn~~~l~~ll---g~~G~~VLYfGDHIygDI~~sKk~~gWRT~aIVp 464 (630)
.. +......+..+-...+.+++ +...++++|+||+. +|+--.+. .| ..++|.|
T Consensus 143 ~g--~~~~~~~~g~~K~~~l~~~~~~~~~~~~~~~~~gDs~-~D~~~~~~-a~-~~~~v~~ 198 (202)
T TIGR01490 143 TG--NIDGNNCKGEGKVHALAELLAEEQIDLKDSYAYGDSI-SDLPLLSL-VG-HPYVVNP 198 (202)
T ss_pred eC--CccCCCCCChHHHHHHHHHHHHcCCCHHHcEeeeCCc-ccHHHHHh-CC-CcEEeCC
Confidence 10 00001122223333455544 45556899999999 89865543 33 4445544
No 83
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=92.30 E-value=0.0021 Score=70.27 Aligned_cols=241 Identities=9% Similarity=-0.144 Sum_probs=145.2
Q ss_pred CCCCCeeEecCccccCCccEEEEecccceeeeCccchHHHHHHHHHHHHhhcCCCCCCC--CCCccccccceEeecCCCc
Q 006817 137 RNSPRGIFCSRTLNLRSISAIGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMGFPVEGL--AFDPDLVIRGLVIDKEKGN 214 (630)
Q Consensus 137 ~~~~~~IF~Nr~L~L~~I~~iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~~gYP~~~L--~yDp~F~iRGLv~D~~~Gn 214 (630)
...+-.++++++|... +.+.+++++|++. |..+..+.+.|..--..|...++|...+ .+++-++++|+.++...++
T Consensus 37 TL~~Y~~~~~esLay~-~~~~~l~~~Gyp~-~ll~~~~d~~f~~rGL~ld~~~GN~lKld~~~~vl~a~hg~rfls~~~~ 114 (424)
T KOG2469|consen 37 TLARYNLPEMESLAYD-LAQFLLKDKGYPN-ELLSTSFDWNFPCRGLVLDKERGNLLKLDRFGYVLRAAHGTRFLSNEEI 114 (424)
T ss_pred chhhhcccchHHHHHH-HHHHHHHhcCChh-hhhccccCccceeeeeEEeccCCceeeeeccCceeeeccccccccccch
Confidence 3466679999999999 9999999999998 6666555555544333455678886655 4799999999999999999
Q ss_pred EEeecCCCcEEEEeeccccccHhHHHHHhc-CeeccccccccchhhhhhhchhHHHHHHHHHHhhhcCCCCCCCCCCChH
Q 006817 215 LVKADRFGYVKRAMHGTTMLSNRAVSEMYG-RELVDLRKESRWEFLNTLFSVSEAVAYMQMVNRLDEGAIGPELGPLDYK 293 (630)
Q Consensus 215 LLKvD~~g~I~~a~HG~~~Ls~eEi~e~Yg-~~~i~~~~~~r~~~l~tlFslpEa~L~a~lVd~~d~~~~~~~l~~~~y~ 293 (630)
..+.++.+ -.+++ ...|= ++..+....--+.++-++|+ .+++..+ +.....+.+. ..++
T Consensus 115 ~eiyg~~~---------~~~~~---~~~~~l~t~F~~~ea~~~aq~vd~~d-----~~~~~~~--~~~dyk~~~~-~v~~ 174 (424)
T KOG2469|consen 115 SEIYGRKL---------VRLSD---SRYYLLNTLFSMPEADLFAQAVDFLD-----NGPEYGP--VDMDYKPGWK-DVRA 174 (424)
T ss_pred hhhccccc---------ccccC---chhhhhhhhhhchhHHHHHhhcchhh-----cCCccCc--cchhhcchHH-HHHH
Confidence 99999888 12222 11111 12121111122333444444 3332211 1121222221 3366
Q ss_pred HHHHHHHHHHHhccchhhhHHHHHcCcccccccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhh-c---ccc----cc
Q 006817 294 GLYKAVGKALFRAHVEGQLKSEIMSKPELFVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMM-Q---HSF----NR 365 (630)
Q Consensus 294 ~L~~DV~~Av~~vH~~G~lk~~v~~npekYI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M-~---Yl~----~~ 365 (630)
.++.+..++.-+.|+.|...+.|..+ ++++. .+..+.-.-|...-+ +.++.||++.-+++..| . |.. +.
T Consensus 175 ~~~~~h~~~~lk~~~~~~pek~V~~d-~~~v~-~l~~~r~sGKk~fl~-Tns~~~ytd~~mt~~~~~dW~~yfd~v~~~a 251 (424)
T KOG2469|consen 175 AGNAVHLYGLLKKKMMGKPERYVVYD-GTIVP-LLSMLRDSGKKTFLH-TNSDWDYTDIFMAFHYGFDWETYFDLVETRA 251 (424)
T ss_pred HHhHHHHHHHHHHHHhcCCCceeeec-Ccccc-chHHHHhhccceEEe-eccccchhhHHHHHHhCCCcceeEEEEEEec
Confidence 88888888988899999997766554 45554 444444444444445 47999999999999999 2 211 10
Q ss_pred cCC--CCCCCCCCccEEEEccCCCCCCCCCCCcEEeeCCCC
Q 006817 366 FLP--NDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEG 404 (630)
Q Consensus 366 ~l~--~g~dWrd~FDvVIv~A~KP~FF~~~~pf~~v~~~~g 404 (630)
..| .++. --+++ |-+++.||.==+...|..+....+|
T Consensus 252 ~Kp~ff~e~-~vlre-V~t~~g~l~~g~~~~p~e~~~~ySg 290 (424)
T KOG2469|consen 252 AKPGFFHEG-TVLRE-VEPQEGLLKNGDNTGPLEQGGVYSG 290 (424)
T ss_pred cCCcccccc-ceeee-eccccccccccccCCcchhcccCCc
Confidence 011 1222 22222 4567777654444556655544444
No 84
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=91.42 E-value=0.17 Score=42.28 Aligned_cols=41 Identities=22% Similarity=0.300 Sum_probs=34.2
Q ss_pred HHHHHHhCCCCCcEEEEcCccccchhccccccCceEEeehHh
Q 006817 424 QMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICRE 465 (630)
Q Consensus 424 ~~l~~llg~~G~~VLYfGDHIygDI~~sKk~~gWRT~aIVpE 465 (630)
....+.++....++++|||.+..||.-.+. .||+|++|.--
T Consensus 11 ~~a~~~~~~~~~~~~~VGD~~~~Di~~a~~-~G~~~ilV~tG 51 (75)
T PF13242_consen 11 EQALKRLGVDPSRCVMVGDSLETDIEAAKA-AGIDTILVLTG 51 (75)
T ss_dssp HHHHHHHTSGGGGEEEEESSTTTHHHHHHH-TTSEEEEESSS
T ss_pred HHHHHHcCCCHHHEEEEcCCcHhHHHHHHH-cCCcEEEECCC
Confidence 345666788888999999999999998875 69999999643
No 85
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=90.99 E-value=0.36 Score=51.61 Aligned_cols=69 Identities=23% Similarity=0.299 Sum_probs=55.7
Q ss_pred chhhhHHHHHcCccccc-ccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCC
Q 006817 308 VEGQLKSEIMSKPELFV-EPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARK 386 (630)
Q Consensus 308 ~~G~lk~~v~~npekYI-~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A~K 386 (630)
.+|+|-. + ++=| .+||.+..+|.+|+++|.++.|+||+.-+++...|+.+ ....|||+||+....
T Consensus 133 LDgTLi~----~-~~~v~irdPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~l---------GLd~YFdvIIs~Gdv 198 (301)
T TIGR01684 133 LDSTLIT----D-EEPVRIRDPRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKV---------KLDRYFDIIISGGHK 198 (301)
T ss_pred cCCCCcC----C-CCccccCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHc---------CCCcccCEEEECCcc
Confidence 5787732 2 3434 56899999999999999999999999999999888865 377899999999877
Q ss_pred CCCC
Q 006817 387 PEFF 390 (630)
Q Consensus 387 P~FF 390 (630)
..--
T Consensus 199 ~~~k 202 (301)
T TIGR01684 199 AEEY 202 (301)
T ss_pred ccCC
Confidence 5444
No 86
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=90.69 E-value=0.64 Score=43.76 Aligned_cols=37 Identities=11% Similarity=0.117 Sum_probs=34.0
Q ss_pred cCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhccc
Q 006817 326 PDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHS 362 (630)
Q Consensus 326 kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl 362 (630)
..|....+|..++++|.++.++|+|.-.|+..++..+
T Consensus 74 ~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~ 110 (177)
T TIGR01488 74 LRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKL 110 (177)
T ss_pred cCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHc
Confidence 4688999999999999999999999999999998876
No 87
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=90.50 E-value=0.31 Score=50.54 Aligned_cols=105 Identities=13% Similarity=0.083 Sum_probs=66.4
Q ss_pred CCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCC-CccEEEEccCCCCCCCCCCCcEEeeCCCCc
Q 006817 327 DPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRD-LFNMVIVSARKPEFFQMSHPLYEVVTGEGL 405 (630)
Q Consensus 327 dp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd-~FDvVIv~A~KP~FF~~~~pf~~v~~~~g~ 405 (630)
.|....+|.+|++.|.+++++||.+..++..++.++- +.. +||.|+....-+.|..+.. .++
T Consensus 189 ~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l~---------~~~~~f~~i~~~~~~~~~~~~~~--------~~k 251 (300)
T PHA02530 189 NPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWLR---------QTDIWFDDLIGRPPDMHFQREQG--------DKR 251 (300)
T ss_pred ChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHHHHH---------HcCCchhhhhCCcchhhhcccCC--------CCC
Confidence 4678889999999999999999999999999999883 343 7998876653222221110 010
Q ss_pred ccccccCCCCccccCCCHHHHHHHhCC-CCCcEEEEcCccccchhccccccCceEEee
Q 006817 406 MRPCFKARTGGLYSGGSAQMIENSLNI-HGDEILYVGDHIYTDVSQSKVHLRWRTALI 462 (630)
Q Consensus 406 l~~~~~l~~G~VYsgGn~~~l~~llg~-~G~~VLYfGDHIygDI~~sKk~~gWRT~aI 462 (630)
-.+ .++. ..+.+ ++. .-.+++||||..+ ||...+ ..|-.+++|
T Consensus 252 p~p-------~~~~----~~l~~-~~~~~~~~~~~vgD~~~-d~~~a~-~~Gi~~i~v 295 (300)
T PHA02530 252 PDD-------VVKE----EIFWE-KIAPKYDVLLAVDDRDQ-VVDMWR-RIGLECWQV 295 (300)
T ss_pred CcH-------HHHH----HHHHH-HhccCceEEEEEcCcHH-HHHHHH-HhCCeEEEe
Confidence 000 0110 12233 344 3478999999954 444443 457777766
No 88
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=90.37 E-value=1.9 Score=42.77 Aligned_cols=48 Identities=15% Similarity=0.027 Sum_probs=39.2
Q ss_pred HHHcCcccccccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhccc
Q 006817 315 EIMSKPELFVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHS 362 (630)
Q Consensus 315 ~v~~npekYI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl 362 (630)
++.+-..+.+...|.+..+|..+++.|.++.++|||.-.|+..++..+
T Consensus 60 ~~~~~~~~~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~ 107 (214)
T TIGR03333 60 EITSFVLETAEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGI 107 (214)
T ss_pred HHHHHHHhcCcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhh
Confidence 343333334667889999999999999999999999999999998876
No 89
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=89.94 E-value=0.56 Score=53.83 Aligned_cols=35 Identities=26% Similarity=0.326 Sum_probs=30.6
Q ss_pred cCcccccccCCCchHHHHHHHHhCCeEEEEeCCCh
Q 006817 318 SKPELFVEPDPELPLALLDQKEAGKKLLLITNSDY 352 (630)
Q Consensus 318 ~npekYI~kdp~l~~~L~~lr~~GKKlFLiTNS~~ 352 (630)
.+|+.+...-|.++..|.+|++.|.+++++||..-
T Consensus 190 ~~~~d~~~l~pgV~e~L~~L~~~Gy~IvIvTNQ~g 224 (526)
T TIGR01663 190 KGPDDWQIIFPEIPEKLKELEADGFKICIFTNQGG 224 (526)
T ss_pred CCHHHeeecccCHHHHHHHHHHCCCEEEEEECCcc
Confidence 46777766678999999999999999999999766
No 90
>PRK08238 hypothetical protein; Validated
Probab=89.90 E-value=0.81 Score=51.87 Aligned_cols=46 Identities=30% Similarity=0.382 Sum_probs=39.9
Q ss_pred CCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEcc
Q 006817 327 DPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSA 384 (630)
Q Consensus 327 dp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A 384 (630)
.|+...+++++++.|.++.|+|||+-.+++.+++++ | + ||.||..-
T Consensus 74 ~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~l-------G--l---Fd~Vigsd 119 (479)
T PRK08238 74 NEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHL-------G--L---FDGVFASD 119 (479)
T ss_pred ChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHc-------C--C---CCEEEeCC
Confidence 467889999999999999999999999999999977 2 2 89888763
No 91
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=89.32 E-value=0.59 Score=50.11 Aligned_cols=69 Identities=22% Similarity=0.282 Sum_probs=54.2
Q ss_pred chhhhHHHHHcCccccc-ccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCC
Q 006817 308 VEGQLKSEIMSKPELFV-EPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARK 386 (630)
Q Consensus 308 ~~G~lk~~v~~npekYI-~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A~K 386 (630)
.+|+|-.. ++=| .++|.+..+|.+|++.|.++.++||.+-+++...++.+ .+..+||+||+....
T Consensus 135 ~D~TL~~~-----~~~v~irdp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~l---------gL~~yFDvII~~g~i 200 (303)
T PHA03398 135 LDSTLITD-----EEPVRIRDPFVYDSLDELKERGCVLVLWSYGNREHVVHSLKET---------KLEGYFDIIICGGRK 200 (303)
T ss_pred cCCCccCC-----CCccccCChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHc---------CCCccccEEEECCCc
Confidence 56776321 3333 56899999999999999999999999999998888865 267999999998775
Q ss_pred CCCC
Q 006817 387 PEFF 390 (630)
Q Consensus 387 P~FF 390 (630)
.+--
T Consensus 201 ~~k~ 204 (303)
T PHA03398 201 AGEY 204 (303)
T ss_pred cccc
Confidence 4433
No 92
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=88.81 E-value=0.38 Score=47.05 Aligned_cols=81 Identities=14% Similarity=0.194 Sum_probs=58.6
Q ss_pred HHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeeCCCCccccccc
Q 006817 332 LALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEGLMRPCFK 411 (630)
Q Consensus 332 ~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A~KP~FF~~~~pf~~v~~~~g~l~~~~~ 411 (630)
..+.+|++.|.++.++||.+...+..++..+ | +..+|+ +.+|
T Consensus 55 ~~i~~L~~~Gi~v~I~T~~~~~~v~~~l~~l-------g--l~~~f~-----g~~~------------------------ 96 (183)
T PRK09484 55 YGIRCLLTSGIEVAIITGRKSKLVEDRMTTL-------G--ITHLYQ-----GQSN------------------------ 96 (183)
T ss_pred HHHHHHHHCCCEEEEEeCCCcHHHHHHHHHc-------C--Cceeec-----CCCc------------------------
Confidence 4677888999999999999999999988876 1 333442 1000
Q ss_pred CCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhccccccCceE
Q 006817 412 ARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRT 459 (630)
Q Consensus 412 l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDI~~sKk~~gWRT 459 (630)
+ ..-+..+++.+|....+|+||||.+ .|+.-.+. .|...
T Consensus 97 --k-----~~~l~~~~~~~gl~~~ev~~VGDs~-~D~~~a~~-aG~~~ 135 (183)
T PRK09484 97 --K-----LIAFSDLLEKLAIAPEQVAYIGDDL-IDWPVMEK-VGLSV 135 (183)
T ss_pred --H-----HHHHHHHHHHhCCCHHHEEEECCCH-HHHHHHHH-CCCeE
Confidence 0 1224456677788889999999997 89987765 58773
No 93
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=88.70 E-value=1.2 Score=43.26 Aligned_cols=37 Identities=16% Similarity=0.300 Sum_probs=32.3
Q ss_pred ccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhccc
Q 006817 325 EPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHS 362 (630)
Q Consensus 325 ~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl 362 (630)
..-|....+|..++++ .++.++||+.-.+++.++..+
T Consensus 68 ~~~pg~~e~L~~L~~~-~~~~IvS~~~~~~~~~~l~~~ 104 (205)
T PRK13582 68 DPLPGAVEFLDWLRER-FQVVILSDTFYEFAGPLMRQL 104 (205)
T ss_pred CCCCCHHHHHHHHHhc-CCEEEEeCCcHHHHHHHHHHc
Confidence 3458888999999988 789999999999999988865
No 94
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=86.93 E-value=0.55 Score=48.18 Aligned_cols=37 Identities=27% Similarity=0.308 Sum_probs=31.4
Q ss_pred HHHHhCCCCCcEEEEcCccccchhccccccCceEEeeh
Q 006817 426 IENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 463 (630)
Q Consensus 426 l~~llg~~G~~VLYfGDHIygDI~~sKk~~gWRT~aIV 463 (630)
+.+.++....+++||||++..||.-.+. .||+|++|-
T Consensus 187 ~~~~~~~~~~~~~~VGD~~~~Di~~a~~-~G~~~v~v~ 223 (249)
T TIGR01457 187 AVEHLGTEREETLMVGDNYLTDIRAGID-AGIDTLLVH 223 (249)
T ss_pred HHHHcCCCcccEEEECCCchhhHHHHHH-cCCcEEEEc
Confidence 4555677788999999999999998876 599999995
No 95
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=86.25 E-value=1 Score=43.40 Aligned_cols=55 Identities=15% Similarity=0.083 Sum_probs=47.2
Q ss_pred CcccccccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEE
Q 006817 319 KPELFVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIV 382 (630)
Q Consensus 319 npekYI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv 382 (630)
+..-|+.+-|.+..+|..|.+. -.+.+.|++.-.|++.+++.+- .++.+|+.++.
T Consensus 36 ~~~~~v~~RPgl~eFL~~l~~~-yei~I~Ts~~~~yA~~il~~ld--------p~~~~f~~~l~ 90 (162)
T TIGR02251 36 IIPVYVFKRPHVDEFLERVSKW-YELVIFTASLEEYADPVLDILD--------RGGKVISRRLY 90 (162)
T ss_pred EEEEEEEECCCHHHHHHHHHhc-CEEEEEcCCcHHHHHHHHHHHC--------cCCCEEeEEEE
Confidence 5567889999999999999887 7899999999999999999872 35668887765
No 96
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=85.37 E-value=2 Score=44.49 Aligned_cols=66 Identities=8% Similarity=0.098 Sum_probs=45.9
Q ss_pred hhHHHHHcCcccccccCCCchHHHHHHHHhCCeEEEEeCCC----hHHHHHhhcccccccCCCCCCC-CCCccEEEEcc
Q 006817 311 QLKSEIMSKPELFVEPDPELPLALLDQKEAGKKLLLITNSD----YHYTDKMMQHSFNRFLPNDMGW-RDLFNMVIVSA 384 (630)
Q Consensus 311 ~lk~~v~~npekYI~kdp~l~~~L~~lr~~GKKlFLiTNS~----~~Yt~~~M~Yl~~~~l~~g~dW-rd~FDvVIv~A 384 (630)
.+.+...++...+..+-|....+|..+++.|.++|+|||.. -..++.+++.. | - | .++|++++...
T Consensus 100 ~fw~~y~~~~~~~a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~-g------i-p~~~~f~vil~gd 170 (237)
T PRK11009 100 KFWEKMNNGWDEFSIPKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLADDF-H------I-PADNMNPVIFAGD 170 (237)
T ss_pred HHHHHHHhcccccCcchHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHc-C------C-CcccceeEEEcCC
Confidence 34455555556666677778999999999999999999953 44666666522 2 1 2 56888876543
No 97
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=85.07 E-value=1.1 Score=45.45 Aligned_cols=49 Identities=24% Similarity=0.273 Sum_probs=37.5
Q ss_pred CCCchHHHHHHHHhCCeEEEEeCCChHHHH--HhhcccccccCCCCCCCCC-CccEEEEcc
Q 006817 327 DPELPLALLDQKEAGKKLLLITNSDYHYTD--KMMQHSFNRFLPNDMGWRD-LFNMVIVSA 384 (630)
Q Consensus 327 dp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~--~~M~Yl~~~~l~~g~dWrd-~FDvVIv~A 384 (630)
-|....+|.+|+++|+++.++||+.-.... ..+..+ .+.. +||.||+.+
T Consensus 26 ~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~---------gl~~~~~~~Ii~s~ 77 (242)
T TIGR01459 26 YPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSL---------GINADLPEMIISSG 77 (242)
T ss_pred CccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHC---------CCCccccceEEccH
Confidence 477889999999999999999999877655 333333 2455 899888765
No 98
>PTZ00445 p36-lilke protein; Provisional
Probab=84.36 E-value=1.4 Score=45.30 Aligned_cols=146 Identities=16% Similarity=0.214 Sum_probs=93.5
Q ss_pred HhccchhhhHHHHHcCcccccccC-CCchHHHHHHHHhCCeEEEEeCCChHH--HHHhhcccccccCCCC--CCCCCCcc
Q 006817 304 FRAHVEGQLKSEIMSKPELFVEPD-PELPLALLDQKEAGKKLLLITNSDYHY--TDKMMQHSFNRFLPND--MGWRDLFN 378 (630)
Q Consensus 304 ~~vH~~G~lk~~v~~npekYI~kd-p~l~~~L~~lr~~GKKlFLiTNS~~~Y--t~~~M~Yl~~~~l~~g--~dWrd~FD 378 (630)
=.+|..|...+. +++..++..- |++..|+.+|+++|-++.++|=|+=.- .+.=-+|+-|..+-+. +.=.--|+
T Consensus 55 I~~HsgG~~~~~--~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~lk~s~~~~~ 132 (219)
T PTZ00445 55 ITKHSGGYIDPD--NDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRMVEAALKKSKCDFK 132 (219)
T ss_pred hhhhcccccCCC--cchhhhhccCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechHHHHHHHHHhcCccce
Confidence 357888876554 6778888764 789999999999999999999887533 1111122222111000 11145689
Q ss_pred EEEEccCCCCCCCCCCCcEEeeCCCCcccccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhccccccCce
Q 006817 379 MVIVSARKPEFFQMSHPLYEVVTGEGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWR 458 (630)
Q Consensus 379 vVIv~A~KP~FF~~~~pf~~v~~~~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDI~~sKk~~gWR 458 (630)
+..|.|-=|.|+.+..-+.++ |..+|-. ..+.|. .+.+++-.|....++|+|=|. --.|..+++ .||.
T Consensus 133 i~~~~~yyp~~w~~p~~y~~~----gl~KPdp---~iK~yH---le~ll~~~gl~peE~LFIDD~-~~NVeaA~~-lGi~ 200 (219)
T PTZ00445 133 IKKVYAYYPKFWQEPSDYRPL----GLDAPMP---LDKSYH---LKQVCSDFNVNPDEILFIDDD-MNNCKNALK-EGYI 200 (219)
T ss_pred eeeeeeeCCcccCChhhhhhh----cccCCCc---cchHHH---HHHHHHHcCCCHHHeEeecCC-HHHHHHHHH-CCCE
Confidence 999999999999987655443 3333311 012240 134555567888899999777 344555544 7999
Q ss_pred EEeeh
Q 006817 459 TALIC 463 (630)
Q Consensus 459 T~aIV 463 (630)
|+.+-
T Consensus 201 ai~f~ 205 (219)
T PTZ00445 201 ALHVT 205 (219)
T ss_pred EEEcC
Confidence 99875
No 99
>PLN02645 phosphoglycolate phosphatase
Probab=82.63 E-value=1 Score=47.77 Aligned_cols=37 Identities=27% Similarity=0.368 Sum_probs=31.4
Q ss_pred HHHHhCCCCCcEEEEcCccccchhccccccCceEEeeh
Q 006817 426 IENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 463 (630)
Q Consensus 426 l~~llg~~G~~VLYfGDHIygDI~~sKk~~gWRT~aIV 463 (630)
..+.+|.+..+++||||.+..||.-.+. .||+|++|.
T Consensus 239 a~~~~~~~~~~~~~VGD~~~~Di~~A~~-aG~~~ilV~ 275 (311)
T PLN02645 239 LANKFGIEKSQICMVGDRLDTDILFGQN-GGCKTLLVL 275 (311)
T ss_pred HHHHcCCCcccEEEEcCCcHHHHHHHHH-cCCCEEEEc
Confidence 3445677888999999999999998876 599999994
No 100
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=81.28 E-value=1.5 Score=45.24 Aligned_cols=42 Identities=29% Similarity=0.206 Sum_probs=29.4
Q ss_pred cccCCccEEEEecccceeeeCccchHHHHHHHHHHHHhhcCCCC
Q 006817 149 LNLRSISAIGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMGFPV 192 (630)
Q Consensus 149 L~L~~I~~iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~~gYP~ 192 (630)
|+|++++.|-+|||+||..=+.. .-.... .++++|.+.|.+.
T Consensus 2 ~~~~~~~lI~~DlDGTLL~~~~~-i~~~~~-~ai~~l~~~Gi~~ 43 (271)
T PRK03669 2 LSLQDPLLIFTDLDGTLLDSHTY-DWQPAA-PWLTRLREAQVPV 43 (271)
T ss_pred CCcCCCeEEEEeCccCCcCCCCc-CcHHHH-HHHHHHHHcCCeE
Confidence 78999999999999999964321 212233 3356677888883
No 101
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=81.00 E-value=1.3 Score=50.75 Aligned_cols=36 Identities=25% Similarity=0.342 Sum_probs=33.0
Q ss_pred CCCchHHHHHHHHhC-CeEEEEeCCChHHHHHhhccc
Q 006817 327 DPELPLALLDQKEAG-KKLLLITNSDYHYTDKMMQHS 362 (630)
Q Consensus 327 dp~l~~~L~~lr~~G-KKlFLiTNS~~~Yt~~~M~Yl 362 (630)
-|+...+|.+|++.| .++.++||.+...+..+++.+
T Consensus 386 ~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~l 422 (556)
T TIGR01525 386 RPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAEL 422 (556)
T ss_pred hHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHh
Confidence 367888999999999 999999999999999999977
No 102
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=79.51 E-value=1.5 Score=44.49 Aligned_cols=38 Identities=26% Similarity=0.324 Sum_probs=30.1
Q ss_pred HHHHHhCCCCCcE-EEEcCccccchhccccccCceEEeeh
Q 006817 425 MIENSLNIHGDEI-LYVGDHIYTDVSQSKVHLRWRTALIC 463 (630)
Q Consensus 425 ~l~~llg~~G~~V-LYfGDHIygDI~~sKk~~gWRT~aIV 463 (630)
...+.++...+++ +||||.+..||.-++. .||+|++|.
T Consensus 196 ~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~-~G~~~i~v~ 234 (236)
T TIGR01460 196 AALNLLQARPERRDVMVGDNLRTDILGAKN-AGFDTLLVL 234 (236)
T ss_pred HHHHHhCCCCccceEEECCCcHHHHHHHHH-CCCcEEEEe
Confidence 3455566666665 9999999999998875 699999983
No 103
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=79.49 E-value=7.1 Score=39.25 Aligned_cols=94 Identities=14% Similarity=0.058 Sum_probs=58.8
Q ss_pred cCCCchHHHH-HHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeeCCCC
Q 006817 326 PDPELPLALL-DQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEG 404 (630)
Q Consensus 326 kdp~l~~~L~-~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A~KP~FF~~~~pf~~v~~~~g 404 (630)
.-|.....|. .+++.|.++.++|||+-.|+..++.+. .|..-.++|=+ +. ++. ++|
T Consensus 95 l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~~---------~~~~~~~~i~t---~l----------e~~-~gg 151 (210)
T TIGR01545 95 AFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFDS---------NFIHRLNLIAS---QI----------ERG-NGG 151 (210)
T ss_pred CCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHhc---------cccccCcEEEE---Ee----------EEe-CCc
Confidence 3678888885 678889999999999999999999764 13333444422 21 221 113
Q ss_pred cccccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchh
Q 006817 405 LMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVS 449 (630)
Q Consensus 405 ~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDI~ 449 (630)
.. .....|..|=+..+.+.+|......-..|||+ +|+-
T Consensus 152 ~~------~g~~c~g~~Kv~rl~~~~~~~~~~~~aYsDS~-~D~p 189 (210)
T TIGR01545 152 WV------LPLRCLGHEKVAQLEQKIGSPLKLYSGYSDSK-QDNP 189 (210)
T ss_pred eE------cCccCCChHHHHHHHHHhCCChhheEEecCCc-ccHH
Confidence 22 11224445555567777764334445679998 8864
No 104
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=79.16 E-value=1.2 Score=47.57 Aligned_cols=28 Identities=21% Similarity=0.445 Sum_probs=25.3
Q ss_pred CcEEEEcCccccchhccccccCceEEeeh
Q 006817 435 DEILYVGDHIYTDVSQSKVHLRWRTALIC 463 (630)
Q Consensus 435 ~~VLYfGDHIygDI~~sKk~~gWRT~aIV 463 (630)
.++++|||.+++||.-.+. .||.|++|-
T Consensus 264 ~~~~mIGD~~~tDI~ga~~-~G~~silV~ 291 (321)
T TIGR01456 264 HALYMVGDNPASDIIGAQN-YGWFSCLVK 291 (321)
T ss_pred heEEEEcCChhhhhhhHHh-CCceEEEec
Confidence 5899999999999998875 699999995
No 105
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=78.81 E-value=2.3 Score=48.66 Aligned_cols=35 Identities=17% Similarity=0.351 Sum_probs=32.7
Q ss_pred CCchHHHHHHHHhCC-eEEEEeCCChHHHHHhhccc
Q 006817 328 PELPLALLDQKEAGK-KLLLITNSDYHYTDKMMQHS 362 (630)
Q Consensus 328 p~l~~~L~~lr~~GK-KlFLiTNS~~~Yt~~~M~Yl 362 (630)
|+....+++|++.|. ++.++||.+...+..+++.+
T Consensus 365 ~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~l 400 (536)
T TIGR01512 365 PDAAEAIAELKALGIEKVVMLTGDRRAVAERVAREL 400 (536)
T ss_pred HHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHc
Confidence 678889999999999 99999999999999999977
No 106
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=78.44 E-value=5.6 Score=39.90 Aligned_cols=37 Identities=11% Similarity=0.192 Sum_probs=32.9
Q ss_pred ccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhccc
Q 006817 325 EPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHS 362 (630)
Q Consensus 325 ~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl 362 (630)
...|....++..+++.| ++.++||+.-.++..++..+
T Consensus 68 ~l~pga~ell~~lk~~~-~~~IVS~~~~~~~~~il~~l 104 (203)
T TIGR02137 68 KPLEGAVEFVDWLRERF-QVVILSDTFYEFSQPLMRQL 104 (203)
T ss_pred CCCccHHHHHHHHHhCC-eEEEEeCChHHHHHHHHHHc
Confidence 34788999999999887 89999999999999999876
No 107
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=77.92 E-value=7 Score=40.55 Aligned_cols=114 Identities=18% Similarity=0.344 Sum_probs=70.9
Q ss_pred ccCCCchHHHHHH--HHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeeCC
Q 006817 325 EPDPELPLALLDQ--KEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTG 402 (630)
Q Consensus 325 ~kdp~l~~~L~~l--r~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A~KP~FF~~~~pf~~v~~~ 402 (630)
.-+|.++.++..+ ...|-.+.+|++|.--|.+.+++.- .=+++|+=|+++ |..|.++-- ..|.+.
T Consensus 71 p~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~~---------gl~~~f~~I~TN---pa~~~~~G~-l~v~py 137 (234)
T PF06888_consen 71 PIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILEHH---------GLRDCFSEIFTN---PACFDADGR-LRVRPY 137 (234)
T ss_pred CCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHhC---------CCccccceEEeC---CceecCCce-EEEeCc
Confidence 3467777888888 3568889999999999999999844 367899998886 345543211 122221
Q ss_pred CCcccccccCCCCccccCCC-H--HHHHHHhC------CCCCcEEEEcCccccchhccccccCceEEe
Q 006817 403 EGLMRPCFKARTGGLYSGGS-A--QMIENSLN------IHGDEILYVGDHIYTDVSQSKVHLRWRTAL 461 (630)
Q Consensus 403 ~g~l~~~~~l~~G~VYsgGn-~--~~l~~llg------~~G~~VLYfGDHIygDI~~sKk~~gWRT~a 461 (630)
.. +.+. -++-| + ..+.+++. ..-++|+||||- .+|.-.+++...-+.++
T Consensus 138 h~--------h~C~-~C~~NmCK~~il~~~~~~~~~~g~~~~rviYiGDG-~nD~Cp~~~L~~~D~v~ 195 (234)
T PF06888_consen 138 HS--------HGCS-LCPPNMCKGKILERLLQEQAQRGVPYDRVIYIGDG-RNDFCPALRLRPRDVVF 195 (234)
T ss_pred cC--------CCCC-cCCCccchHHHHHHHHHHHhhcCCCcceEEEECCC-CCCcCcccccCCCCEEe
Confidence 11 1111 11111 1 23444443 334899999998 58888887654455554
No 108
>PRK10444 UMP phosphatase; Provisional
Probab=77.50 E-value=2.1 Score=44.29 Aligned_cols=37 Identities=27% Similarity=0.375 Sum_probs=31.2
Q ss_pred HHHHhCCCCCcEEEEcCccccchhccccccCceEEeeh
Q 006817 426 IENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 463 (630)
Q Consensus 426 l~~llg~~G~~VLYfGDHIygDI~~sKk~~gWRT~aIV 463 (630)
..+.++....+++||||.+..||.-.+. .|++|++|-
T Consensus 183 ~~~~~~~~~~~~v~IGD~~~tDi~~A~~-~G~~~vlV~ 219 (248)
T PRK10444 183 ALNKMQAHSEETVIVGDNLRTDILAGFQ-AGLETILVL 219 (248)
T ss_pred HHHHcCCCcccEEEECCCcHHHHHHHHH-cCCCEEEEC
Confidence 3455677788999999999999998875 699999994
No 109
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=76.85 E-value=4.3 Score=39.26 Aligned_cols=43 Identities=12% Similarity=0.062 Sum_probs=39.1
Q ss_pred CcccccccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhccc
Q 006817 319 KPELFVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHS 362 (630)
Q Consensus 319 npekYI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl 362 (630)
+...|+.+-|.+..+|.++.+. .++.+.||+.-.|++.+++++
T Consensus 52 ~~~~~v~~rPgv~efL~~l~~~-yel~I~T~~~~~yA~~vl~~l 94 (156)
T TIGR02250 52 TMWYLTKLRPFLHEFLKEASKL-YEMHVYTMGTRAYAQAIAKLI 94 (156)
T ss_pred CeEEEEEECCCHHHHHHHHHhh-cEEEEEeCCcHHHHHHHHHHh
Confidence 5678888999999999999855 899999999999999999988
No 110
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=75.33 E-value=22 Score=37.94 Aligned_cols=105 Identities=9% Similarity=0.088 Sum_probs=66.8
Q ss_pred cccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeeCCC
Q 006817 324 VEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGE 403 (630)
Q Consensus 324 I~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A~KP~FF~~~~pf~~v~~~~ 403 (630)
+...|....++..|+++|-++.++|++.-.++..++..+ .|-+.|+.|+.+ . .++ .++
T Consensus 120 l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~l---------gl~~~~~~IvSN--~----------L~f-~~d 177 (277)
T TIGR01544 120 VMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQA---------GVYHPNVKVVSN--F----------MDF-DED 177 (277)
T ss_pred CccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHc---------CCCCcCceEEee--e----------EEE-CCC
Confidence 445788999999999999999999999999999998864 254555444332 1 112 123
Q ss_pred CcccccccCCCCccccCCCHHHH----HHHhC--CCCCcEEEEcCccccchhccccc
Q 006817 404 GLMRPCFKARTGGLYSGGSAQMI----ENSLN--IHGDEILYVGDHIYTDVSQSKVH 454 (630)
Q Consensus 404 g~l~~~~~l~~G~VYsgGn~~~l----~~llg--~~G~~VLYfGDHIygDI~~sKk~ 454 (630)
|.+... ...-|-.+|....+ .+.++ ....+|++|||.+- |+.-..-.
T Consensus 178 GvltG~---~~P~i~~~~K~~~v~~~~~~~~~~~~~~~~vI~vGDs~~-Dl~ma~g~ 230 (277)
T TIGR01544 178 GVLKGF---KGPLIHTFNKNHDVALRNTEYFNQLKDRSNIILLGDSQG-DLRMADGV 230 (277)
T ss_pred CeEeCC---CCCcccccccHHHHHHHHHHHhCccCCcceEEEECcChh-hhhHhcCC
Confidence 433321 11123334444443 33455 55678999999985 77765543
No 111
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=74.99 E-value=3.1 Score=37.20 Aligned_cols=32 Identities=31% Similarity=0.440 Sum_probs=25.0
Q ss_pred CCCchHHHHHHHHhCCeEEEEeCCCh----HHHHHh
Q 006817 327 DPELPLALLDQKEAGKKLLLITNSDY----HYTDKM 358 (630)
Q Consensus 327 dp~l~~~L~~lr~~GKKlFLiTNS~~----~Yt~~~ 358 (630)
-|.-..++.+|+++||+++++||+.- .|.++.
T Consensus 16 ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L 51 (101)
T PF13344_consen 16 IPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKL 51 (101)
T ss_dssp -TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHH
T ss_pred CcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHH
Confidence 46788999999999999999999984 455444
No 112
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=73.54 E-value=3.1 Score=41.03 Aligned_cols=30 Identities=23% Similarity=0.409 Sum_probs=23.5
Q ss_pred HHHHHHHhCCCCCcEEEEcCccccchhcccc
Q 006817 423 AQMIENSLNIHGDEILYVGDHIYTDVSQSKV 453 (630)
Q Consensus 423 ~~~l~~llg~~G~~VLYfGDHIygDI~~sKk 453 (630)
...+.+.+|+...++++|||..- |+--.+.
T Consensus 152 i~~l~~~~~i~~~~~i~iGDs~N-D~~ml~~ 181 (215)
T TIGR01487 152 VEKLKELLGIKPEEVAAIGDSEN-DIDLFRV 181 (215)
T ss_pred HHHHHHHhCCCHHHEEEECCCHH-HHHHHHh
Confidence 45667778999899999999876 7765553
No 113
>PHA02597 30.2 hypothetical protein; Provisional
Probab=73.37 E-value=2.6 Score=40.93 Aligned_cols=14 Identities=29% Similarity=0.245 Sum_probs=13.1
Q ss_pred ccEEEEecccceee
Q 006817 154 ISAIGYDMDYTLMH 167 (630)
Q Consensus 154 I~~iGFDmDYTLa~ 167 (630)
++++-||||+||+-
T Consensus 2 ~k~viFDlDGTLiD 15 (197)
T PHA02597 2 KPTILTDVDGVLLS 15 (197)
T ss_pred CcEEEEecCCceEc
Confidence 68899999999999
No 114
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=72.77 E-value=3 Score=42.45 Aligned_cols=38 Identities=26% Similarity=0.391 Sum_probs=26.6
Q ss_pred CccEEEEecccceeeeCccchHHHHHHHHHHHHhhcCCCC
Q 006817 153 SISAIGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMGFPV 192 (630)
Q Consensus 153 ~I~~iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~~gYP~ 192 (630)
.++.+.||||+||...+.. ...-. ..+++++.+.|.+.
T Consensus 2 ~~kli~~DlDGTLl~~~~~-i~~~~-~~al~~~~~~g~~v 39 (264)
T COG0561 2 MIKLLAFDLDGTLLDSNKT-ISPET-KEALARLREKGVKV 39 (264)
T ss_pred CeeEEEEcCCCCccCCCCc-cCHHH-HHHHHHHHHCCCEE
Confidence 5789999999999999976 22222 22334666788874
No 115
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=72.15 E-value=4.1 Score=41.55 Aligned_cols=36 Identities=25% Similarity=0.310 Sum_probs=24.7
Q ss_pred cCCccEEEEecccceeeeCccchHHHHHHHHHHHHhhcCCC
Q 006817 151 LRSISAIGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMGFP 191 (630)
Q Consensus 151 L~~I~~iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~~gYP 191 (630)
++.|+++-||||+||+.-. ..+++...+.+.++|++
T Consensus 19 ~~~~k~viFDlDGTLiDs~-----~~~~~a~~~~~~~~g~~ 54 (248)
T PLN02770 19 LAPLEAVLFDVDGTLCDSD-----PLHYYAFREMLQEINFN 54 (248)
T ss_pred cCccCEEEEcCCCccCcCH-----HHHHHHHHHHHHHhccc
Confidence 4568999999999999753 23444444455666654
No 116
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=70.63 E-value=2.2 Score=43.11 Aligned_cols=21 Identities=38% Similarity=0.485 Sum_probs=17.5
Q ss_pred ccCCccEEEEecccceeeeCc
Q 006817 150 NLRSISAIGYDMDYTLMHYNV 170 (630)
Q Consensus 150 ~L~~I~~iGFDmDYTLa~Y~~ 170 (630)
+|..|++|-||||+||+--.+
T Consensus 6 ~~~~~k~iiFDlDGTL~D~~~ 26 (238)
T PRK10748 6 PLGRISALTFDLDDTLYDNRP 26 (238)
T ss_pred CCCCceeEEEcCcccccCChH
Confidence 356799999999999998653
No 117
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=68.36 E-value=5.3 Score=41.97 Aligned_cols=36 Identities=14% Similarity=0.080 Sum_probs=26.2
Q ss_pred CCccEEEEecccceeeeCccchHHHHHHHHHHHHhhcCCC
Q 006817 152 RSISAIGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMGFP 191 (630)
Q Consensus 152 ~~I~~iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~~gYP 191 (630)
+.+++|-||||+||+-... .+.++...+.+.++|+|
T Consensus 38 ~~~k~VIFDlDGTLvDS~~----~~~~~a~~~~l~~~G~~ 73 (286)
T PLN02779 38 ALPEALLFDCDGVLVETER----DGHRVAFNDAFKEFGLR 73 (286)
T ss_pred cCCcEEEEeCceeEEcccc----HHHHHHHHHHHHHcCCC
Confidence 4579999999999998641 34455555566778985
No 118
>PRK09449 dUMP phosphatase; Provisional
Probab=67.19 E-value=4.8 Score=39.66 Aligned_cols=32 Identities=22% Similarity=0.319 Sum_probs=21.4
Q ss_pred CccEEEEecccceeeeCccchHHHHHHHHHHHHhhcCCC
Q 006817 153 SISAIGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMGFP 191 (630)
Q Consensus 153 ~I~~iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~~gYP 191 (630)
.|++|-||||+||+.+.. ++.+.+.+...|++
T Consensus 2 ~~k~iiFDlDGTLid~~~-------~~~~~~~~~~~g~~ 33 (224)
T PRK09449 2 KYDWILFDADETLFHFDA-------FAGLQRMFSRYGVD 33 (224)
T ss_pred CccEEEEcCCCchhcchh-------hHHHHHHHHHhCCC
Confidence 489999999999997432 23333334556765
No 119
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=67.19 E-value=9.2 Score=41.02 Aligned_cols=67 Identities=16% Similarity=0.196 Sum_probs=55.3
Q ss_pred cCcccccccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCC
Q 006817 318 SKPELFVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMS 393 (630)
Q Consensus 318 ~npekYI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A~KP~FF~~~ 393 (630)
.+-+.=-.++|.+...|.+||+.|..|.|=+-..-+++...|+-+- =.++||+||+..+|-+-....
T Consensus 135 td~~~v~Ir~~~v~~sL~~Lk~~g~vLvLWSyG~~eHV~~sl~~~~---------L~~~Fd~ii~~G~~~~~~~~~ 201 (297)
T PF05152_consen 135 TDEGDVRIRDPAVYDSLRELKEQGCVLVLWSYGNREHVRHSLKELK---------LEGYFDIIICGGNKAGEYNSR 201 (297)
T ss_pred ccCCccccCChHHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHHhC---------CccccEEEEeCCccCCcCCcc
Confidence 3333334688999999999999999999999999999999999762 238999999999998777644
No 120
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=67.18 E-value=7.3 Score=44.93 Aligned_cols=35 Identities=14% Similarity=0.227 Sum_probs=32.3
Q ss_pred CCchHHHHHHHHhCCeEEEEeCCChHHHHHhhccc
Q 006817 328 PELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHS 362 (630)
Q Consensus 328 p~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl 362 (630)
|+...++++|++.|.++.++||.+-.+++.+++.+
T Consensus 408 ~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~l 442 (562)
T TIGR01511 408 PEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKEL 442 (562)
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHc
Confidence 56778999999999999999999999999999987
No 121
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=64.97 E-value=6.2 Score=38.50 Aligned_cols=18 Identities=17% Similarity=0.493 Sum_probs=15.7
Q ss_pred ccEEEEecccceeeeCcc
Q 006817 154 ISAIGYDMDYTLMHYNVM 171 (630)
Q Consensus 154 I~~iGFDmDYTLa~Y~~~ 171 (630)
|+++-||||+||+.....
T Consensus 1 ~k~viFD~DGTL~d~~~~ 18 (224)
T TIGR02254 1 YKTLLFDLDDTILDFQAA 18 (224)
T ss_pred CCEEEEcCcCcccccchH
Confidence 678999999999998753
No 122
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=63.88 E-value=7.4 Score=39.39 Aligned_cols=33 Identities=12% Similarity=0.132 Sum_probs=25.4
Q ss_pred HHHHHHHhCCCCCcEEEEcCccccchhccccccCc
Q 006817 423 AQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRW 457 (630)
Q Consensus 423 ~~~l~~llg~~G~~VLYfGDHIygDI~~sKk~~gW 457 (630)
+..+++.+|+..++|++|||.. .|+--.+. .|+
T Consensus 204 l~~l~~~~gi~~~e~i~~GD~~-NDi~m~~~-ag~ 236 (272)
T PRK10530 204 LTQWVEAQGWSMKNVVAFGDNF-NDISMLEA-AGL 236 (272)
T ss_pred HHHHHHHcCCCHHHeEEeCCCh-hhHHHHHh-cCc
Confidence 4567788899889999999995 78876654 354
No 123
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=62.47 E-value=4.6 Score=36.64 Aligned_cols=38 Identities=26% Similarity=0.289 Sum_probs=22.6
Q ss_pred cEEEEecccceee---eCccchHHHHHHHHH---HHHhhcCCCC
Q 006817 155 SAIGYDMDYTLMH---YNVMAWEGRAYDYCM---VNLRNMGFPV 192 (630)
Q Consensus 155 ~~iGFDmDYTLa~---Y~~~~~e~L~y~~~~---~~Lv~~gYP~ 192 (630)
+++-||||+||.. |..+.-+...|..+. +.|.+.||+.
T Consensus 1 k~~~~D~dgtL~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~l 44 (132)
T TIGR01662 1 KGVVLDLDGTLTDDVPYVDDEDERILYPEVPDALAELKEAGYKV 44 (132)
T ss_pred CEEEEeCCCceecCCCCCCCHHHheeCCCHHHHHHHHHHCCCEE
Confidence 5788999999994 222222233444443 4455677773
No 124
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=62.09 E-value=9.8 Score=36.46 Aligned_cols=35 Identities=14% Similarity=0.054 Sum_probs=20.2
Q ss_pred cEEEEecccceeeeCccchHHHHHHHHH-HHHh-hcCCC
Q 006817 155 SAIGYDMDYTLMHYNVMAWEGRAYDYCM-VNLR-NMGFP 191 (630)
Q Consensus 155 ~~iGFDmDYTLa~Y~~~~~e~L~y~~~~-~~Lv-~~gYP 191 (630)
+++-||||+||+--... +. -+++.++ +.+. .+|.|
T Consensus 1 ~~viFDlDGTL~ds~~~-~~-~~~~~~~~~~~~~~~g~~ 37 (184)
T TIGR01993 1 DVWFFDLDNTLYPHSAG-IF-LQIDRNITEFVAARLKLS 37 (184)
T ss_pred CeEEEeCCCCCCCCccc-HH-HHHHHHHHHHHHHHcCcC
Confidence 57899999999943322 22 2333332 3333 57776
No 125
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=59.78 E-value=8.4 Score=39.17 Aligned_cols=37 Identities=24% Similarity=0.231 Sum_probs=25.7
Q ss_pred CccEEEEecccceeeeCccchHHHHHHHHHHHHhhcCCC
Q 006817 153 SISAIGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMGFP 191 (630)
Q Consensus 153 ~I~~iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~~gYP 191 (630)
.|+.+.||||+||...+. .+..-.. .++++|.+.|++
T Consensus 2 ~~kli~~DlDGTLl~~~~-~i~~~~~-~ai~~l~~~G~~ 38 (270)
T PRK10513 2 AIKLIAIDMDGTLLLPDH-TISPAVK-QAIAAARAKGVN 38 (270)
T ss_pred ceEEEEEecCCcCcCCCC-ccCHHHH-HHHHHHHHCCCE
Confidence 488999999999997643 2333333 345667788877
No 126
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=58.70 E-value=9.3 Score=37.74 Aligned_cols=35 Identities=17% Similarity=0.296 Sum_probs=26.5
Q ss_pred CHHHHHHHhCCCCCcEEEEcCccccchhccccccCce
Q 006817 422 SAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWR 458 (630)
Q Consensus 422 n~~~l~~llg~~G~~VLYfGDHIygDI~~sKk~~gWR 458 (630)
-+..+++.+|....++++|||..- |+--.+. .|+-
T Consensus 161 al~~l~~~~~i~~~~~i~~GD~~N-Di~m~~~-ag~~ 195 (230)
T PRK01158 161 GLKKLAELMGIDPEEVAAIGDSEN-DLEMFEV-AGFG 195 (230)
T ss_pred HHHHHHHHhCCCHHHEEEECCchh-hHHHHHh-cCce
Confidence 345778888998899999999876 8776654 3553
No 127
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=58.59 E-value=11 Score=35.56 Aligned_cols=16 Identities=25% Similarity=0.372 Sum_probs=14.2
Q ss_pred ccEEEEecccceeeeC
Q 006817 154 ISAIGYDMDYTLMHYN 169 (630)
Q Consensus 154 I~~iGFDmDYTLa~Y~ 169 (630)
|++|-||+|+||+-..
T Consensus 1 ~~~iiFD~DGTL~ds~ 16 (185)
T TIGR02009 1 YKAVIFDMDGVIVDTA 16 (185)
T ss_pred CCeEEEcCCCcccCCh
Confidence 5789999999999875
No 128
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=57.24 E-value=7.1 Score=37.88 Aligned_cols=40 Identities=18% Similarity=0.322 Sum_probs=24.2
Q ss_pred CccEEEEecccceeeeCccc-h----HHH--HHHHH---HHHHhhcCCCC
Q 006817 153 SISAIGYDMDYTLMHYNVMA-W----EGR--AYDYC---MVNLRNMGFPV 192 (630)
Q Consensus 153 ~I~~iGFDmDYTLa~Y~~~~-~----e~L--~y~~~---~~~Lv~~gYP~ 192 (630)
..+++-||+|+||...++.. + +.. .|.-+ ++.|.+.||+.
T Consensus 12 ~~k~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l 61 (166)
T TIGR01664 12 QSKVAAFDLDGTLITTRSGKVFPTSASDWRFLYPEIPAKLQELDDEGYKI 61 (166)
T ss_pred cCcEEEEeCCCceEecCCCCcccCChHHeEEecCCHHHHHHHHHHCCCEE
Confidence 45889999999999744311 1 111 23333 45566778874
No 129
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=55.83 E-value=6.6 Score=39.55 Aligned_cols=20 Identities=25% Similarity=0.436 Sum_probs=16.6
Q ss_pred cccCCccEEEEecccceeee
Q 006817 149 LNLRSISAIGYDMDYTLMHY 168 (630)
Q Consensus 149 L~L~~I~~iGFDmDYTLa~Y 168 (630)
+....|++|-||||+||+-.
T Consensus 5 ~~~~~~k~vIFDlDGTL~d~ 24 (224)
T PRK14988 5 IAWQDVDTVLLDMDGTLLDL 24 (224)
T ss_pred CCcccCCEEEEcCCCCccch
Confidence 34557899999999999993
No 130
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=55.63 E-value=8.5 Score=36.30 Aligned_cols=15 Identities=20% Similarity=0.255 Sum_probs=13.1
Q ss_pred cEEEEecccceeeeC
Q 006817 155 SAIGYDMDYTLMHYN 169 (630)
Q Consensus 155 ~~iGFDmDYTLa~Y~ 169 (630)
++|.||+|+||+.-+
T Consensus 2 K~i~~DiDGTL~~~~ 16 (126)
T TIGR01689 2 KRLVMDLDNTITLTE 16 (126)
T ss_pred CEEEEeCCCCcccCC
Confidence 689999999998764
No 131
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=55.01 E-value=25 Score=35.62 Aligned_cols=39 Identities=15% Similarity=0.215 Sum_probs=34.8
Q ss_pred cccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhccc
Q 006817 324 VEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHS 362 (630)
Q Consensus 324 I~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl 362 (630)
+.--|....++..+++.|-++++||.|.-.|++.++..+
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~l 114 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERL 114 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHh
Confidence 444577888999999999999999999999999999977
No 132
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=54.49 E-value=11 Score=36.58 Aligned_cols=34 Identities=26% Similarity=0.421 Sum_probs=28.3
Q ss_pred HcCcccccccCCCchHHHHHHHHhCCeEEEEeCC
Q 006817 317 MSKPELFVEPDPELPLALLDQKEAGKKLLLITNS 350 (630)
Q Consensus 317 ~~npekYI~kdp~l~~~L~~lr~~GKKlFLiTNS 350 (630)
..+|+.+..-.|.++..|.++.+.|.+++++||-
T Consensus 21 ~~~~~D~~~~~~~v~~~L~~l~~~Gy~IvIvTNQ 54 (159)
T PF08645_consen 21 PKDPDDWKFFPPGVPEALRELHKKGYKIVIVTNQ 54 (159)
T ss_dssp -SSTCGGEEC-TTHHHHHHHHHHTTEEEEEEEE-
T ss_pred cCCHHHhhhcchhHHHHHHHHHhcCCeEEEEeCc
Confidence 3468888888888999999999999999999995
No 133
>PTZ00174 phosphomannomutase; Provisional
Probab=54.22 E-value=14 Score=37.70 Aligned_cols=37 Identities=19% Similarity=0.229 Sum_probs=26.0
Q ss_pred CccEEEEecccceeeeCccchHHHHHHHHHHHHhhcCCC
Q 006817 153 SISAIGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMGFP 191 (630)
Q Consensus 153 ~I~~iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~~gYP 191 (630)
+++.|.||||+||..-+.. +..-. ..++++|.+.|..
T Consensus 4 ~~klia~DlDGTLL~~~~~-is~~~-~~ai~~l~~~Gi~ 40 (247)
T PTZ00174 4 KKTILLFDVDGTLTKPRNP-ITQEM-KDTLAKLKSKGFK 40 (247)
T ss_pred CCeEEEEECcCCCcCCCCC-CCHHH-HHHHHHHHHCCCE
Confidence 4899999999999976543 43333 3445667777775
No 134
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=53.25 E-value=12 Score=40.32 Aligned_cols=47 Identities=19% Similarity=0.274 Sum_probs=30.8
Q ss_pred ccccCCccEEEEecccceeeeCccc-h-HHHHHHHHHHHHhhcCCCCCCC
Q 006817 148 TLNLRSISAIGYDMDYTLMHYNVMA-W-EGRAYDYCMVNLRNMGFPVEGL 195 (630)
Q Consensus 148 ~L~L~~I~~iGFDmDYTLa~Y~~~~-~-e~L~y~~~~~~Lv~~gYP~~~L 195 (630)
++-.+-.++|.||||+||..=..+. . ..-+.+ +++.|.+.|+|..+.
T Consensus 120 ~~~~~~~kvIvFDLDgTLi~~~~~v~irdPgV~E-aL~~LkekGikLaIa 168 (301)
T TIGR01684 120 SKVFEPPHVVVFDLDSTLITDEEPVRIRDPRIYD-SLTELKKRGCILVLW 168 (301)
T ss_pred ccccccceEEEEecCCCCcCCCCccccCCHHHHH-HHHHHHHCCCEEEEE
Confidence 4556677899999999998865321 1 122333 467788889885433
No 135
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=53.25 E-value=11 Score=36.48 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=15.0
Q ss_pred hCCCCCcEEEEcCccccchhcc
Q 006817 430 LNIHGDEILYVGDHIYTDVSQS 451 (630)
Q Consensus 430 lg~~G~~VLYfGDHIygDI~~s 451 (630)
++..+.+++||||.. .|+...
T Consensus 140 ~~~~~~~~v~iGDs~-~D~~~~ 160 (205)
T PRK13582 140 LKSLGYRVIAAGDSY-NDTTML 160 (205)
T ss_pred HHHhCCeEEEEeCCH-HHHHHH
Confidence 344567899999996 786433
No 136
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=52.91 E-value=15 Score=34.95 Aligned_cols=39 Identities=21% Similarity=0.194 Sum_probs=24.5
Q ss_pred ccEEEEecccceee----eCccc--hHHHHH--HHHHHHHhhcCCCC
Q 006817 154 ISAIGYDMDYTLMH----YNVMA--WEGRAY--DYCMVNLRNMGFPV 192 (630)
Q Consensus 154 I~~iGFDmDYTLa~----Y~~~~--~e~L~y--~~~~~~Lv~~gYP~ 192 (630)
|+++-||+|+||.. |.... ...+-+ ..+++.|.+.||..
T Consensus 1 ~~~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~~~~~i~~Lk~~G~~i 47 (154)
T TIGR01670 1 IRLLILDVDGVLTDGKIYYTNNGEEIKAFNVRDGYGIRCALKSGIEV 47 (154)
T ss_pred CeEEEEeCceeEEcCeEEECCCCcEEEEEechhHHHHHHHHHCCCEE
Confidence 67899999999998 43331 111100 12677888777764
No 137
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=52.91 E-value=13 Score=38.28 Aligned_cols=36 Identities=11% Similarity=0.119 Sum_probs=26.8
Q ss_pred HHHHHHHhCCCC-CcEEEEcCccccchhccccccCceEE
Q 006817 423 AQMIENSLNIHG-DEILYVGDHIYTDVSQSKVHLRWRTA 460 (630)
Q Consensus 423 ~~~l~~llg~~G-~~VLYfGDHIygDI~~sKk~~gWRT~ 460 (630)
...+.+.+|... .+|++|||..- |+--.+ ..|...+
T Consensus 195 l~~l~~~~~i~~~~~v~~~GDs~N-Di~m~~-~ag~~va 231 (273)
T PRK00192 195 VRWLKELYRRQDGVETIALGDSPN-DLPMLE-AADIAVV 231 (273)
T ss_pred HHHHHHHHhccCCceEEEEcCChh-hHHHHH-hCCeeEE
Confidence 567788889998 99999999987 766544 3454443
No 138
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=52.56 E-value=8 Score=37.41 Aligned_cols=17 Identities=24% Similarity=0.210 Sum_probs=12.7
Q ss_pred cEEEEecccceeeeCcc
Q 006817 155 SAIGYDMDYTLMHYNVM 171 (630)
Q Consensus 155 ~~iGFDmDYTLa~Y~~~ 171 (630)
++.+||+|+||+.-++.
T Consensus 1 Kia~fD~DgTLi~~~s~ 17 (159)
T PF08645_consen 1 KIAFFDLDGTLIKTKSG 17 (159)
T ss_dssp SEEEE-SCTTTEE-STS
T ss_pred CEEEEeCCCCccCCCCC
Confidence 57899999999998764
No 139
>PRK10976 putative hydrolase; Provisional
Probab=52.23 E-value=14 Score=37.55 Aligned_cols=37 Identities=19% Similarity=0.146 Sum_probs=25.7
Q ss_pred ccEEEEecccceeeeCccchHHHHHHHHHHHHhhcCCCC
Q 006817 154 ISAIGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMGFPV 192 (630)
Q Consensus 154 I~~iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~~gYP~ 192 (630)
|+.+.+|||+||..-+. .+..-.. .++++|.+.|.+.
T Consensus 2 ikli~~DlDGTLl~~~~-~is~~~~-~ai~~l~~~G~~~ 38 (266)
T PRK10976 2 YQVVASDLDGTLLSPDH-TLSPYAK-ETLKLLTARGIHF 38 (266)
T ss_pred ceEEEEeCCCCCcCCCC-cCCHHHH-HHHHHHHHCCCEE
Confidence 78999999999997653 2333333 3456677888873
No 140
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=52.08 E-value=12 Score=40.25 Aligned_cols=80 Identities=15% Similarity=0.045 Sum_probs=45.3
Q ss_pred hchhHHHHHHHHHHhhhcCCCCCCCCCCChHHHHHHHHHHHHhccchhhhHHHHHcCcccccc--------cCCCchHHH
Q 006817 263 FSVSEAVAYMQMVNRLDEGAIGPELGPLDYKGLYKAVGKALFRAHVEGQLKSEIMSKPELFVE--------PDPELPLAL 334 (630)
Q Consensus 263 FslpEa~L~a~lVd~~d~~~~~~~l~~~~y~~L~~DV~~Av~~vH~~G~lk~~v~~npekYI~--------kdp~l~~~L 334 (630)
......|+|+++ -.+.......-..+.-.+|.+.++.-+...+ + .+---.||- -+|.|..++
T Consensus 32 ~~Cs~~CvyC~~--G~~~~~~~~~~efi~~~~I~~~~~~~~~~~g-~-------ea~~pd~vtis~~GEPTLy~~L~elI 101 (296)
T COG0731 32 KWCSYNCVYCWR--GRTKKGTPERPEFIVEESILEELKLLLGYKG-D-------EATEPDHVTISLSGEPTLYPNLGELI 101 (296)
T ss_pred hhhcCCCeEEec--ccCCCCCCCCCceecHHHHHHHHHHHhcccc-c-------ccCCCCEEEEeCCCCcccccCHHHHH
Confidence 344556788776 1111111111112455677776665554433 0 111223331 146788888
Q ss_pred HHHHHhC-CeEEEEeCCCh
Q 006817 335 LDQKEAG-KKLLLITNSDY 352 (630)
Q Consensus 335 ~~lr~~G-KKlFLiTNS~~ 352 (630)
..+++.| |++|||||+.-
T Consensus 102 ~~~k~~g~~~tflvTNgsl 120 (296)
T COG0731 102 EEIKKRGKKTTFLVTNGSL 120 (296)
T ss_pred HHHHhcCCceEEEEeCCCh
Confidence 8899999 79999999988
No 141
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=50.87 E-value=13 Score=37.65 Aligned_cols=34 Identities=26% Similarity=0.342 Sum_probs=22.6
Q ss_pred EEEEecccceeeeCccchHHHHHHHHHHHHhhcCCCC
Q 006817 156 AIGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMGFPV 192 (630)
Q Consensus 156 ~iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~~gYP~ 192 (630)
+|-||||+||.. +...... -..++++|.+.|.|.
T Consensus 1 li~~DlDGTLl~-~~~~~~~--~~~ai~~l~~~G~~~ 34 (225)
T TIGR02461 1 VIFTDLDGTLLP-PGYEPGP--AREALEELKDLGFPI 34 (225)
T ss_pred CEEEeCCCCCcC-CCCCchH--HHHHHHHHHHCCCEE
Confidence 367999999998 4333332 244556677788883
No 142
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=50.44 E-value=18 Score=34.11 Aligned_cols=100 Identities=9% Similarity=0.112 Sum_probs=63.0
Q ss_pred cchhhhHHHHHcCccccc--ccCCCchHHHHHHHHhCCeEEEEeCCChHHHH------------HhhcccccccCCCCCC
Q 006817 307 HVEGQLKSEIMSKPELFV--EPDPELPLALLDQKEAGKKLLLITNSDYHYTD------------KMMQHSFNRFLPNDMG 372 (630)
Q Consensus 307 H~~G~lk~~v~~npekYI--~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~------------~~M~Yl~~~~l~~g~d 372 (630)
-.+|+| +..+.+.|. ...++....|.++++.|-+++++|.-+..... .+..++- .
T Consensus 7 DiDGTL---~~~~~~~y~~~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~--------k 75 (126)
T TIGR01689 7 DLDNTI---TLTENGDYANVAPILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLN--------Q 75 (126)
T ss_pred eCCCCc---ccCCCCcccccccCHHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHH--------H
Confidence 467877 333444564 34567777888888999999999999998876 6677663 3
Q ss_pred CCCCccEEEEccCCC---CCCCCCCCcEEeeCCCCcccccccCCCCccccCCCHHHHHHHhCCCC
Q 006817 373 WRDLFNMVIVSARKP---EFFQMSHPLYEVVTGEGLMRPCFKARTGGLYSGGSAQMIENSLNIHG 434 (630)
Q Consensus 373 Wrd~FDvVIv~A~KP---~FF~~~~pf~~v~~~~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G 434 (630)
|.=-||=|++.+--| +||-+.+-. +...+.+=|..++++|++...
T Consensus 76 ~~ipYd~l~~~kp~~~~~~~~~dD~~i-----------------r~~~~~~~~~~~~~~~~~~~~ 123 (126)
T TIGR01689 76 HNVPYDEIYVGKPWCGHDGFYVDDRAI-----------------RPSEFSSLTYDEINTLTKIDK 123 (126)
T ss_pred cCCCCceEEeCCCcCCCCCceecchhh-----------------CHHHHHhcCHHHHHHHHhhcc
Confidence 555677777753322 344433321 123444556667777776543
No 143
>PLN02645 phosphoglycolate phosphatase
Probab=50.16 E-value=17 Score=38.64 Aligned_cols=65 Identities=17% Similarity=0.113 Sum_probs=40.2
Q ss_pred ccchhhhHHHHHcCcccccccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEcc
Q 006817 306 AHVEGQLKSEIMSKPELFVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSA 384 (630)
Q Consensus 306 vH~~G~lk~~v~~npekYI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A 384 (630)
...+|.|+.. ..+ =|.....|.+|+++||+++++||.+..-...+.+.+-. + | -.-.+|-|++.+
T Consensus 33 ~D~DGtl~~~------~~~--~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~--l--G--i~~~~~~I~ts~ 97 (311)
T PLN02645 33 FDCDGVIWKG------DKL--IEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFES--L--G--LNVTEEEIFSSS 97 (311)
T ss_pred EeCcCCeEeC------Ccc--CcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHH--C--C--CCCChhhEeehH
Confidence 3467888652 112 26678999999999999999999774444443333211 0 1 224466666654
No 144
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=49.05 E-value=14 Score=31.92 Aligned_cols=15 Identities=33% Similarity=0.474 Sum_probs=12.5
Q ss_pred EEEEecccceeeeCc
Q 006817 156 AIGYDMDYTLMHYNV 170 (630)
Q Consensus 156 ~iGFDmDYTLa~Y~~ 170 (630)
++-||+|+||+.-++
T Consensus 1 ~~vfD~D~tl~~~~~ 15 (139)
T cd01427 1 AVLFDLDGTLLDSEP 15 (139)
T ss_pred CeEEccCCceEccCc
Confidence 367999999988774
No 145
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=48.90 E-value=14 Score=37.80 Aligned_cols=26 Identities=15% Similarity=0.318 Sum_probs=21.2
Q ss_pred HHHHHHHhCCCCCcEEEEcCccccchh
Q 006817 423 AQMIENSLNIHGDEILYVGDHIYTDVS 449 (630)
Q Consensus 423 ~~~l~~llg~~G~~VLYfGDHIygDI~ 449 (630)
+..|++.+|+...+|+-|||.- -||-
T Consensus 193 l~~l~~~~gi~~~~v~afGD~~-NDi~ 218 (272)
T PRK15126 193 LAVLSQHLGLSLADCMAFGDAM-NDRE 218 (272)
T ss_pred HHHHHHHhCCCHHHeEEecCCH-HHHH
Confidence 4678999999999999999973 4544
No 146
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=48.77 E-value=15 Score=35.63 Aligned_cols=30 Identities=23% Similarity=0.361 Sum_probs=18.4
Q ss_pred EEEecccceeeeCccchHHHHHHHHHHHHhhcCCC
Q 006817 157 IGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMGFP 191 (630)
Q Consensus 157 iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~~gYP 191 (630)
+-||||+||+-- +...++...+.+.+.|.|
T Consensus 1 viFD~DGTL~Ds-----~~~~~~~~~~~~~~~~~~ 30 (213)
T TIGR01449 1 VLFDLDGTLVDS-----APDIAAAVNMALAALGLP 30 (213)
T ss_pred CeecCCCccccC-----HHHHHHHHHHHHHHCCCC
Confidence 359999999952 223344334445567776
No 147
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=48.59 E-value=9.6 Score=37.42 Aligned_cols=19 Identities=42% Similarity=0.585 Sum_probs=16.2
Q ss_pred cCCccEEEEecccceeeeC
Q 006817 151 LRSISAIGYDMDYTLMHYN 169 (630)
Q Consensus 151 L~~I~~iGFDmDYTLa~Y~ 169 (630)
++.++++-||||+||+...
T Consensus 11 ~~~~k~iiFD~DGTL~~~~ 29 (219)
T TIGR00338 11 LRSKKLVVFDMDSTLINAE 29 (219)
T ss_pred hccCCEEEEeCcccCCCch
Confidence 5668899999999999863
No 148
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=46.82 E-value=19 Score=35.51 Aligned_cols=33 Identities=24% Similarity=0.439 Sum_probs=0.0
Q ss_pred EEEecccceeeeCccchHHHHHHHHHHHHhhcCCC
Q 006817 157 IGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMGFP 191 (630)
Q Consensus 157 iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~~gYP 191 (630)
|.+|||+||..-+...... -..+++.|.+.|.|
T Consensus 2 i~~DlDGTLL~~~~~~~~~--~~~~l~~l~~~gi~ 34 (221)
T TIGR02463 2 VFSDLDGTLLDSHSYDWQP--AAPWLTRLQEAGIP 34 (221)
T ss_pred EEEeCCCCCcCCCCCCcHH--HHHHHHHHHHCCCe
No 149
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=45.86 E-value=18 Score=39.06 Aligned_cols=48 Identities=21% Similarity=0.228 Sum_probs=31.0
Q ss_pred ccccCCccEEEEecccceeeeCccc-h-HHHHHHHHHHHHhhcCCCCCCCC
Q 006817 148 TLNLRSISAIGYDMDYTLMHYNVMA-W-EGRAYDYCMVNLRNMGFPVEGLA 196 (630)
Q Consensus 148 ~L~L~~I~~iGFDmDYTLa~Y~~~~-~-e~L~y~~~~~~Lv~~gYP~~~L~ 196 (630)
++-.+-.++++||||+||..=..+. . ..-+++ +++.|.+.|++.....
T Consensus 122 ~~~~~~~~~i~~D~D~TL~~~~~~v~irdp~V~E-tL~eLkekGikLaIvT 171 (303)
T PHA03398 122 SLVWEIPHVIVFDLDSTLITDEEPVRIRDPFVYD-SLDELKERGCVLVLWS 171 (303)
T ss_pred eeEeeeccEEEEecCCCccCCCCccccCChhHHH-HHHHHHHCCCEEEEEc
Confidence 3444566899999999998765321 1 133455 4567888888854433
No 150
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=44.86 E-value=14 Score=36.25 Aligned_cols=33 Identities=21% Similarity=0.198 Sum_probs=0.0
Q ss_pred EEEecccceeeeCccchHHHHHHHHHHHHhhcCCC
Q 006817 157 IGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMGFP 191 (630)
Q Consensus 157 iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~~gYP 191 (630)
|.||||+||. +...--.-....++++|.+.|.+
T Consensus 1 i~~DlDGTLl--~~~~~i~~~~~~al~~l~~~Gi~ 33 (225)
T TIGR01482 1 IASDIDGTLT--DPNRAINESALEAIRKAESVGIP 33 (225)
T ss_pred CeEeccCccC--CCCcccCHHHHHHHHHHHHCCCE
No 151
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=44.64 E-value=20 Score=34.58 Aligned_cols=14 Identities=21% Similarity=0.225 Sum_probs=11.8
Q ss_pred EEEEecccceeeeC
Q 006817 156 AIGYDMDYTLMHYN 169 (630)
Q Consensus 156 ~iGFDmDYTLa~Y~ 169 (630)
+|-||||+||....
T Consensus 1 iVisDIDGTL~~sd 14 (157)
T smart00775 1 IVISDIDGTITKSD 14 (157)
T ss_pred CEEEecCCCCcccc
Confidence 36799999999875
No 152
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=44.42 E-value=17 Score=34.45 Aligned_cols=31 Identities=19% Similarity=0.259 Sum_probs=20.1
Q ss_pred EEEEecccceeeeCccchHHHHHHHHHHHHhhcCCC
Q 006817 156 AIGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMGFP 191 (630)
Q Consensus 156 ~iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~~gYP 191 (630)
++-||+|+||+.... ..+....+-+.++|+|
T Consensus 1 ~iiFD~DGTL~ds~~-----~~~~~~~~~~~~~g~~ 31 (185)
T TIGR01990 1 AVIFDLDGVITDTAE-----YHYLAWKALADELGIP 31 (185)
T ss_pred CeEEcCCCccccChH-----HHHHHHHHHHHHcCCC
Confidence 367999999997653 3444444434567776
No 153
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=41.61 E-value=18 Score=37.12 Aligned_cols=128 Identities=16% Similarity=0.187 Sum_probs=74.5
Q ss_pred HHHHHHHHH----HHhccchhhhHHHHHcCccccccc---------------CCCchHHHHHHHHhCCeEEEEeCCChHH
Q 006817 294 GLYKAVGKA----LFRAHVEGQLKSEIMSKPELFVEP---------------DPELPLALLDQKEAGKKLLLITNSDYHY 354 (630)
Q Consensus 294 ~L~~DV~~A----v~~vH~~G~lk~~v~~npekYI~k---------------dp~l~~~L~~lr~~GKKlFLiTNS~~~Y 354 (630)
.+.+++++. ...|| | +.+||++||.. .+.+..+|..+|+.|+|.-|.-|-.-+.
T Consensus 47 ~~i~~i~~~~~~~~~dvH----L---Mv~~p~~~i~~~~~~gad~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~ 119 (220)
T PRK08883 47 PICKALRDYGITAPIDVH----L---MVKPVDRIIPDFAKAGASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPL 119 (220)
T ss_pred HHHHHHHHhCCCCCEEEE----e---ccCCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCCCCH
Confidence 355667653 24577 2 45677777633 3457788999999999999998876544
Q ss_pred HHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeeCCCCcccccccC--CC---CccccCCCHH--HHH
Q 006817 355 TDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEGLMRPCFKA--RT---GGLYSGGSAQ--MIE 427 (630)
Q Consensus 355 t~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A~KP~FF~~~~pf~~v~~~~g~l~~~~~l--~~---G~VYsgGn~~--~l~ 427 (630)
... .+ +-++-|.|.+-+--|+|-.. +|.....+ +++...++ ++ -.|...|... .+.
T Consensus 120 ~~i--~~-----------~l~~~D~vlvMtV~PGfgGq--~fi~~~le--kI~~l~~~~~~~~~~~~I~vdGGI~~eni~ 182 (220)
T PRK08883 120 HHL--EY-----------IMDKVDLILLMSVNPGFGGQ--SFIPHTLD--KLRAVRKMIDESGRDIRLEIDGGVKVDNIR 182 (220)
T ss_pred HHH--HH-----------HHHhCCeEEEEEecCCCCCc--eecHhHHH--HHHHHHHHHHhcCCCeeEEEECCCCHHHHH
Confidence 322 22 33578999999999999643 33221111 11111111 11 1244555443 333
Q ss_pred HHhCCCCCcEEEEcCcccc
Q 006817 428 NSLNIHGDEILYVGDHIYT 446 (630)
Q Consensus 428 ~llg~~G~~VLYfGDHIyg 446 (630)
++. ..|.+++-+|=-||+
T Consensus 183 ~l~-~aGAd~vVvGSaIf~ 200 (220)
T PRK08883 183 EIA-EAGADMFVAGSAIFG 200 (220)
T ss_pred HHH-HcCCCEEEEeHHHhC
Confidence 333 457788888865553
No 154
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=41.50 E-value=73 Score=33.27 Aligned_cols=47 Identities=9% Similarity=0.085 Sum_probs=39.8
Q ss_pred cCcccccccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhccccc
Q 006817 318 SKPELFVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFN 364 (630)
Q Consensus 318 ~npekYI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~ 364 (630)
....++..-+++++.++..|.+.|..++-+|-.+-.+.+..+++|-.
T Consensus 74 ~~~~~~~lie~~~~~~i~~lq~~~~~v~alT~~~~~~~~~t~~~Lk~ 120 (252)
T PF11019_consen 74 FELRKMELIESDVPNIINSLQNKGIPVIALTARGPNMEDWTLRELKS 120 (252)
T ss_pred HhhcceEEcchhHHHHHHHHHHCCCcEEEEcCCChhhHHHHHHHHHH
Confidence 34445555677899999999999999999999999999999999863
No 155
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=40.07 E-value=29 Score=32.02 Aligned_cols=14 Identities=36% Similarity=0.430 Sum_probs=12.4
Q ss_pred cEEEEecccceeee
Q 006817 155 SAIGYDMDYTLMHY 168 (630)
Q Consensus 155 ~~iGFDmDYTLa~Y 168 (630)
+++-||+||||...
T Consensus 1 kli~~DlD~Tl~~~ 14 (128)
T TIGR01681 1 KVIVFDLDNTLWTG 14 (128)
T ss_pred CEEEEeCCCCCCCC
Confidence 46889999999987
No 156
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=39.27 E-value=27 Score=36.08 Aligned_cols=27 Identities=22% Similarity=0.199 Sum_probs=23.6
Q ss_pred CCCchHHHHHHHHhCCeEEEEeCCChH
Q 006817 327 DPELPLALLDQKEAGKKLLLITNSDYH 353 (630)
Q Consensus 327 dp~l~~~L~~lr~~GKKlFLiTNS~~~ 353 (630)
-|.....+.+|+++|++++++||.+..
T Consensus 23 ~~~a~~al~~l~~~G~~~~~~Tn~~~~ 49 (257)
T TIGR01458 23 VPGSQEAVKRLRGASVKVRFVTNTTKE 49 (257)
T ss_pred CCCHHHHHHHHHHCCCeEEEEECCCCC
Confidence 467888999999999999999997665
No 157
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=38.78 E-value=16 Score=35.28 Aligned_cols=17 Identities=29% Similarity=0.358 Sum_probs=14.7
Q ss_pred ccEEEEecccceeeeCc
Q 006817 154 ISAIGYDMDYTLMHYNV 170 (630)
Q Consensus 154 I~~iGFDmDYTLa~Y~~ 170 (630)
|++|-||||+||+-+.+
T Consensus 1 ik~viFD~dgTLiD~~~ 17 (198)
T TIGR01428 1 IKALVFDVYGTLFDVHS 17 (198)
T ss_pred CcEEEEeCCCcCccHHH
Confidence 57899999999998763
No 158
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=38.58 E-value=79 Score=31.82 Aligned_cols=23 Identities=43% Similarity=0.554 Sum_probs=21.5
Q ss_pred CCCchHHHHHHHHhCCeEEEEeC
Q 006817 327 DPELPLALLDQKEAGKKLLLITN 349 (630)
Q Consensus 327 dp~l~~~L~~lr~~GKKlFLiTN 349 (630)
.|...+.|.+|++.|-++.++||
T Consensus 33 ~~g~i~al~~l~~~gy~lVvvTN 55 (181)
T COG0241 33 IPGVIPALLKLQRAGYKLVVVTN 55 (181)
T ss_pred CccHHHHHHHHHhCCCeEEEEEC
Confidence 57888999999999999999999
No 159
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=37.68 E-value=51 Score=29.99 Aligned_cols=27 Identities=11% Similarity=0.183 Sum_probs=22.2
Q ss_pred EEEEeCCChHHHHHhhcccccccCCCC
Q 006817 344 LLLITNSDYHYTDKMMQHSFNRFLPND 370 (630)
Q Consensus 344 lFLiTNS~~~Yt~~~M~Yl~~~~l~~g 370 (630)
+|-+|||+|...+.+.+|+--..+|.|
T Consensus 2 f~YvS~SPwnly~~l~~Fl~~~~~P~G 28 (100)
T PF09949_consen 2 FFYVSNSPWNLYPFLRDFLRRNGFPAG 28 (100)
T ss_pred EEEEcCCHHHHHHHHHHHHHhcCCCCC
Confidence 688999999999999999964445655
No 160
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=37.30 E-value=32 Score=35.47 Aligned_cols=128 Identities=16% Similarity=0.167 Sum_probs=74.5
Q ss_pred HHHHHHHH----HHhccchhhhHHHHHcCccccccc---------------CCCchHHHHHHHHhCCeEEEEeCCChHHH
Q 006817 295 LYKAVGKA----LFRAHVEGQLKSEIMSKPELFVEP---------------DPELPLALLDQKEAGKKLLLITNSDYHYT 355 (630)
Q Consensus 295 L~~DV~~A----v~~vH~~G~lk~~v~~npekYI~k---------------dp~l~~~L~~lr~~GKKlFLiTNS~~~Yt 355 (630)
+.+++++. ...|| | ..+||++||.. .+.+..+|..+|+.|+|.-|.-|-.-+.-
T Consensus 52 ~i~~lr~~~~~~~~dvH----L---Mv~~P~~~i~~~~~~gad~I~~H~Ea~~~~~~~l~~Ir~~g~k~GlalnP~T~~~ 124 (223)
T PRK08745 52 VCQALRKHGITAPIDVH----L---MVEPVDRIVPDFADAGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNPATPVD 124 (223)
T ss_pred HHHHHHhhCCCCCEEEE----e---ccCCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCceeEEeCCCCCHH
Confidence 55666654 14567 2 45677777633 34567889999999999999988654332
Q ss_pred HHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeeCCCCcccccccC--C---CCccccCCCHH-HHHHH
Q 006817 356 DKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEGLMRPCFKA--R---TGGLYSGGSAQ-MIENS 429 (630)
Q Consensus 356 ~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A~KP~FF~~~~pf~~v~~~~g~l~~~~~l--~---~G~VYsgGn~~-~l~~l 429 (630)
.+-.| + ++.|.|.+-+--|+|-... |.+-.. .+++...++ + .-.|..-|... +-.+.
T Consensus 125 -~i~~~-l-----------~~vD~VlvMtV~PGf~GQ~--fi~~~l--~KI~~l~~~~~~~~~~~~IeVDGGI~~eti~~ 187 (223)
T PRK08745 125 -ILDWV-L-----------PELDLVLVMSVNPGFGGQA--FIPSAL--DKLRAIRKKIDALGKPIRLEIDGGVKADNIGA 187 (223)
T ss_pred -HHHHH-H-----------hhcCEEEEEEECCCCCCcc--ccHHHH--HHHHHHHHHHHhcCCCeeEEEECCCCHHHHHH
Confidence 22222 2 4789999999999998543 211000 011110011 1 12355555443 22334
Q ss_pred hCCCCCcEEEEcCcccc
Q 006817 430 LNIHGDEILYVGDHIYT 446 (630)
Q Consensus 430 lg~~G~~VLYfGDHIyg 446 (630)
+-..|.+++-+|=-||+
T Consensus 188 l~~aGaDi~V~GSaiF~ 204 (223)
T PRK08745 188 IAAAGADTFVAGSAIFN 204 (223)
T ss_pred HHHcCCCEEEEChhhhC
Confidence 44457899999976664
No 161
>PLN02887 hydrolase family protein
Probab=37.10 E-value=33 Score=40.19 Aligned_cols=28 Identities=32% Similarity=0.522 Sum_probs=22.4
Q ss_pred HHHHHHHhCCCCCcEEEEcCccccchhcc
Q 006817 423 AQMIENSLNIHGDEILYVGDHIYTDVSQS 451 (630)
Q Consensus 423 ~~~l~~llg~~G~~VLYfGDHIygDI~~s 451 (630)
+..|++.+|+...+|+.|||. +-||-=-
T Consensus 512 Lk~L~e~lGI~~eeviAFGDs-~NDIeML 539 (580)
T PLN02887 512 VKMLLNHLGVSPDEIMAIGDG-ENDIEML 539 (580)
T ss_pred HHHHHHHcCCCHHHEEEEecc-hhhHHHH
Confidence 467899999999999999998 3565533
No 162
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=36.38 E-value=34 Score=32.91 Aligned_cols=38 Identities=26% Similarity=0.275 Sum_probs=22.4
Q ss_pred cEEEEecccceeeeC--ccchHHH-HHH---HHHHHHhhcCCCC
Q 006817 155 SAIGYDMDYTLMHYN--VMAWEGR-AYD---YCMVNLRNMGFPV 192 (630)
Q Consensus 155 ~~iGFDmDYTLa~Y~--~~~~e~L-~y~---~~~~~Lv~~gYP~ 192 (630)
+++-||.|+||+... ....+.+ .|. .+++.|.+.||+.
T Consensus 2 ~~~~~D~Dgtl~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l 45 (176)
T TIGR00213 2 KAIFLDRDGTINIDHGYVHEIDNFEFIDGVIDALRELKKMGYAL 45 (176)
T ss_pred CEEEEeCCCCEeCCCCCCCCHHHeEECCCHHHHHHHHHHCCCEE
Confidence 678999999999321 1122232 122 2345666788884
No 163
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=36.03 E-value=19 Score=34.45 Aligned_cols=17 Identities=35% Similarity=0.348 Sum_probs=14.8
Q ss_pred ccEEEEecccceeeeCc
Q 006817 154 ISAIGYDMDYTLMHYNV 170 (630)
Q Consensus 154 I~~iGFDmDYTLa~Y~~ 170 (630)
|+.+-||+|+||+.-.+
T Consensus 4 ~k~viFD~DGTLid~~~ 20 (201)
T TIGR01491 4 IKLIIFDLDGTLTDVMS 20 (201)
T ss_pred ceEEEEeCCCCCcCCcc
Confidence 78899999999998653
No 164
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=34.73 E-value=33 Score=32.43 Aligned_cols=35 Identities=14% Similarity=0.297 Sum_probs=31.8
Q ss_pred CCchHHHHHHHHhCCeEEEEeCCChHHHHHhhccc
Q 006817 328 PELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHS 362 (630)
Q Consensus 328 p~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl 362 (630)
|+...++..++++|.+++++|.|+-.++..++.++
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~ 126 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERL 126 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHc
Confidence 77779999999999999999999999999998744
No 165
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=34.51 E-value=19 Score=35.23 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=18.0
Q ss_pred cCCCchHHHHHHHHhCCeEEEEeCCChH
Q 006817 326 PDPELPLALLDQKEAGKKLLLITNSDYH 353 (630)
Q Consensus 326 kdp~l~~~L~~lr~~GKKlFLiTNS~~~ 353 (630)
+-|.....|.+|++.|-.+++||.++..
T Consensus 74 p~~gA~e~l~~L~~~g~~~~~Itar~~~ 101 (191)
T PF06941_consen 74 PIPGAVEALKKLRDKGHEIVIITARPPE 101 (191)
T ss_dssp B-TTHHHHHHHHHTSTTEEEEEEE-SSS
T ss_pred ccHHHHHHHHHHHHcCCcEEEEEecCcc
Confidence 4456667777787777566667766665
No 166
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=33.00 E-value=47 Score=34.12 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=20.1
Q ss_pred CCchHHHHHHHHhCCeEEEEeC
Q 006817 328 PELPLALLDQKEAGKKLLLITN 349 (630)
Q Consensus 328 p~l~~~L~~lr~~GKKlFLiTN 349 (630)
|.....|.+|+++|++++++||
T Consensus 20 ~~a~~~l~~l~~~g~~~~~~Tn 41 (249)
T TIGR01457 20 PEAETFVHELQKRDIPYLFVTN 41 (249)
T ss_pred cCHHHHHHHHHHCCCeEEEEeC
Confidence 4678899999999999999998
No 167
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=32.66 E-value=81 Score=31.24 Aligned_cols=25 Identities=28% Similarity=0.550 Sum_probs=19.3
Q ss_pred CCCeeEecCcc------------cc---CCccEEEEeccc
Q 006817 139 SPRGIFCSRTL------------NL---RSISAIGYDMDY 163 (630)
Q Consensus 139 ~~~~IF~Nr~L------------~L---~~I~~iGFDmDY 163 (630)
.+..|||++.- .+ ++|.++|||-+.
T Consensus 172 ~~~ai~~~~d~~a~g~~~~l~~~g~~~p~di~iig~d~~~ 211 (263)
T cd06280 172 RPEALVASNGLLLLGALRAVRAAGLRIPQDLALAGFDNDP 211 (263)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCCCCCcEEEEEeCChh
Confidence 47899999763 12 689999999875
No 168
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=32.47 E-value=51 Score=36.30 Aligned_cols=56 Identities=18% Similarity=0.338 Sum_probs=42.3
Q ss_pred CCchHHHHHHHHhC-CeEEEEeCCChHHHHHhhcccccccCCCC----CCCCCCccEEEEc
Q 006817 328 PELPLALLDQKEAG-KKLLLITNSDYHYTDKMMQHSFNRFLPND----MGWRDLFNMVIVS 383 (630)
Q Consensus 328 p~l~~~L~~lr~~G-KKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g----~dWrd~FDvVIv~ 383 (630)
|.+..|++.|-+.| .-+|-++||+|.+-...=.|+-.+.+|.| .+|-..||.+++.
T Consensus 199 pGV~~~yr~l~~~~~apvfYvSnSPw~~f~~L~efi~~~~~P~GPl~L~~~g~~~~~i~~s 259 (373)
T COG4850 199 PGVSAWYRALTNLGDAPVFYVSNSPWQLFPTLQEFITNRNFPYGPLLLRRWGGVLDNIIES 259 (373)
T ss_pred CCHHHHHHHHHhcCCCCeEEecCChhHhHHHHHHHHhcCCCCCCchhHhhcCCcccccccc
Confidence 56777888887776 77999999999999999999887667766 3555555555443
No 169
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=32.20 E-value=41 Score=32.41 Aligned_cols=37 Identities=19% Similarity=0.203 Sum_probs=32.2
Q ss_pred CCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccc
Q 006817 327 DPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSF 363 (630)
Q Consensus 327 dp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~ 363 (630)
.|....++.+++++|.+++++|.++|.-.+....|+-
T Consensus 29 ~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~ 65 (157)
T smart00775 29 HPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLS 65 (157)
T ss_pred CHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHH
Confidence 4678889999999999999999999999887777763
No 170
>PLN02423 phosphomannomutase
Probab=31.78 E-value=46 Score=34.15 Aligned_cols=34 Identities=26% Similarity=0.216 Sum_probs=19.9
Q ss_pred CCccEEE-EecccceeeeCccchHHHHHHHHHHHHhh
Q 006817 152 RSISAIG-YDMDYTLMHYNVMAWEGRAYDYCMVNLRN 187 (630)
Q Consensus 152 ~~I~~iG-FDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~ 187 (630)
++.+++. ||||+||..-+-+ +..-.. .++++|.+
T Consensus 4 ~~~~~i~~~D~DGTLl~~~~~-i~~~~~-~ai~~l~~ 38 (245)
T PLN02423 4 RKPGVIALFDVDGTLTAPRKE-ATPEML-EFMKELRK 38 (245)
T ss_pred CccceEEEEeccCCCcCCCCc-CCHHHH-HHHHHHHh
Confidence 4566666 9999999965533 333222 33444543
No 171
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=31.59 E-value=47 Score=36.02 Aligned_cols=37 Identities=14% Similarity=0.273 Sum_probs=25.6
Q ss_pred ccEEEEecccceeeeCccchHHHHHHHHHHHHhhcCCCC
Q 006817 154 ISAIGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMGFPV 192 (630)
Q Consensus 154 I~~iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~~gYP~ 192 (630)
.+.|-+|||+||..-+...++. +. -++++|.+.|.|.
T Consensus 1 ~KLIftDLDGTLLd~~~~~~~~-a~-~aL~~Lk~~GI~v 37 (302)
T PRK12702 1 MRLVLSSLDGSLLDLEFNSYGA-AR-QALAALERRSIPL 37 (302)
T ss_pred CcEEEEeCCCCCcCCCCcCCHH-HH-HHHHHHHHCCCEE
Confidence 3678899999999854433333 33 3467788889983
No 172
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=31.58 E-value=80 Score=37.91 Aligned_cols=44 Identities=16% Similarity=0.109 Sum_probs=30.7
Q ss_pred CccccCCccEEEEecccceeeeCccchHHHHHHHHHHHHhhcCCCC
Q 006817 147 RTLNLRSISAIGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMGFPV 192 (630)
Q Consensus 147 r~L~L~~I~~iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~~gYP~ 192 (630)
+..+....++|-+|||+||..-+...... . ..+++.|.+.|.|.
T Consensus 409 ~~~~~~~~KLIfsDLDGTLLd~d~~i~~~-t-~eAL~~L~ekGI~~ 452 (694)
T PRK14502 409 LPSSGQFKKIVYTDLDGTLLNPLTYSYST-A-LDALRLLKDKELPL 452 (694)
T ss_pred CCCcCceeeEEEEECcCCCcCCCCccCHH-H-HHHHHHHHHcCCeE
Confidence 45566788999999999999854432232 2 23566777889883
No 173
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=31.54 E-value=37 Score=34.30 Aligned_cols=34 Identities=24% Similarity=0.292 Sum_probs=0.0
Q ss_pred EEEEecccceeeeCccchHHHHHHHHHHHHhhcCCC
Q 006817 156 AIGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMGFP 191 (630)
Q Consensus 156 ~iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~~gYP 191 (630)
.+-||||+||..-+.. +..-..+ ++++|.+.|++
T Consensus 1 li~~DlDGTLl~~~~~-i~~~~~~-~i~~l~~~G~~ 34 (256)
T TIGR00099 1 LIFIDLDGTLLNDDHT-ISPSTKE-ALAKLREKGIK 34 (256)
T ss_pred CEEEeCCCCCCCCCCc-cCHHHHH-HHHHHHHCCCe
No 174
>COG5610 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=31.28 E-value=96 Score=35.77 Aligned_cols=114 Identities=18% Similarity=0.262 Sum_probs=71.7
Q ss_pred Cccccc-ccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcE
Q 006817 319 KPELFV-EPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLY 397 (630)
Q Consensus 319 npekYI-~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A~KP~FF~~~~pf~ 397 (630)
+.||=| .|+.+...+.+...++||+|.||+. -.+-..++.=++.. .| |.| ...|++
T Consensus 92 ~tEKevLypn~~~~eL~e~ai~n~krVIlISD--MYlps~Il~~~L~s---~g----------------~d~--~nipiY 148 (635)
T COG5610 92 NTEKEVLYPNKKNIELVEEAIKNEKRVILISD--MYLPSSILRTFLNS---FG----------------PDF--NNIPIY 148 (635)
T ss_pred ccceeEeeccccchHHHHHHHhCCCeEEEEec--ccCcHHHHHHHHHh---cC----------------CCc--cCceee
Confidence 556654 4677888888999999999999964 34444454433321 12 112 123443
Q ss_pred EeeCCCCcccccccCCCCccccCCCH-HHHHHHhCCCCCcEEEEcCccccchhccccccCceEEeehHhhHH
Q 006817 398 EVVTGEGLMRPCFKARTGGLYSGGSA-QMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICRELEE 468 (630)
Q Consensus 398 ~v~~~~g~l~~~~~l~~G~VYsgGn~-~~l~~llg~~G~~VLYfGDHIygDI~~sKk~~gWRT~aIVpELe~ 468 (630)
-- +.. .+.+ -.|++ +.+.++=++..++.+-+||+..+|++.||+ .|--|-.-+-||-+
T Consensus 149 ~S----~e~----rl~K----nSg~LFk~Vlk~EnVd~~~w~H~GDN~~aD~l~pk~-LgI~Tlf~~s~l~~ 207 (635)
T COG5610 149 MS----SEF----RLKK----NSGNLFKAVLKLENVDPKKWIHCGDNWVADYLKPKN-LGISTLFYISQLLP 207 (635)
T ss_pred ec----cee----ehhc----ccchHHHHHHhhcCCChhheEEecCchhhhhcCccc-cchhHHHHHHHhhh
Confidence 21 111 1111 13443 355667778889999999999999999986 57777666777755
No 175
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=31.24 E-value=25 Score=33.62 Aligned_cols=18 Identities=33% Similarity=0.324 Sum_probs=15.1
Q ss_pred ccEEEEecccceeeeCcc
Q 006817 154 ISAIGYDMDYTLMHYNVM 171 (630)
Q Consensus 154 I~~iGFDmDYTLa~Y~~~ 171 (630)
|+++-||+|+||..-+..
T Consensus 1 i~~i~fDktGTLt~~~~~ 18 (215)
T PF00702_consen 1 IDAICFDKTGTLTQGKMS 18 (215)
T ss_dssp ESEEEEECCTTTBESHHE
T ss_pred CeEEEEecCCCcccCeEE
Confidence 689999999999876644
No 176
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=31.22 E-value=24 Score=34.88 Aligned_cols=11 Identities=45% Similarity=0.918 Sum_probs=0.0
Q ss_pred cEEEEecccce
Q 006817 155 SAIGYDMDYTL 165 (630)
Q Consensus 155 ~~iGFDmDYTL 165 (630)
+.|-||+||||
T Consensus 4 klvvFDLD~Tl 14 (169)
T PF12689_consen 4 KLVVFDLDYTL 14 (169)
T ss_dssp SEEEE-STTTS
T ss_pred cEEEEcCcCCC
No 177
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=30.82 E-value=86 Score=31.77 Aligned_cols=51 Identities=24% Similarity=0.214 Sum_probs=37.5
Q ss_pred CCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCC
Q 006817 328 PELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQ 391 (630)
Q Consensus 328 p~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A~KP~FF~ 391 (630)
+.+..++..+|++|+|.-|.=|-....-. + ..|-+..|.|.+-+-.|+|=.
T Consensus 92 ~~~~~~i~~ik~~g~k~GialnP~T~~~~-----~--------~~~l~~vD~VlvMsV~PG~~G 142 (201)
T PF00834_consen 92 EDPKETIKYIKEAGIKAGIALNPETPVEE-----L--------EPYLDQVDMVLVMSVEPGFGG 142 (201)
T ss_dssp TTHHHHHHHHHHTTSEEEEEE-TTS-GGG-----G--------TTTGCCSSEEEEESS-TTTSS
T ss_pred hCHHHHHHHHHHhCCCEEEEEECCCCchH-----H--------HHHhhhcCEEEEEEecCCCCc
Confidence 45677899999999999998877654321 1 357788999999999999754
No 178
>PRK10444 UMP phosphatase; Provisional
Probab=30.68 E-value=44 Score=34.56 Aligned_cols=36 Identities=19% Similarity=0.155 Sum_probs=28.6
Q ss_pred CCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhccc
Q 006817 327 DPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHS 362 (630)
Q Consensus 327 dp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl 362 (630)
-|....++.+|++.||+++++||....=.....+.+
T Consensus 19 ~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l 54 (248)
T PRK10444 19 VPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRF 54 (248)
T ss_pred CccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHH
Confidence 577889999999999999999999885444444443
No 179
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=30.30 E-value=3e+02 Score=28.74 Aligned_cols=11 Identities=27% Similarity=0.377 Sum_probs=5.6
Q ss_pred hHhhHHHHHHH
Q 006817 463 CRELEEEYNAL 473 (630)
Q Consensus 463 VpELe~Ei~i~ 473 (630)
|.|++.|++.+
T Consensus 34 L~e~~kE~~~L 44 (230)
T PF10146_consen 34 LEEYRKEMEEL 44 (230)
T ss_pred HHHHHHHHHHH
Confidence 44555555544
No 180
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=30.07 E-value=1e+02 Score=32.28 Aligned_cols=68 Identities=25% Similarity=0.287 Sum_probs=35.5
Q ss_pred CCCeeEecCc------------ccc---CCccEEEEecccceeeeCccc-------hHHHH---HHHHHHHHhhcCCCCC
Q 006817 139 SPRGIFCSRT------------LNL---RSISAIGYDMDYTLMHYNVMA-------WEGRA---YDYCMVNLRNMGFPVE 193 (630)
Q Consensus 139 ~~~~IF~Nr~------------L~L---~~I~~iGFDmDYTLa~Y~~~~-------~e~L~---y~~~~~~Lv~~gYP~~ 193 (630)
.+..|||.+. ..+ ++|.++||| |--++.|-.|. .++|+ .+++.+++.....|..
T Consensus 237 ~~~ai~~~nD~~A~g~~~al~~~G~~vP~disVigfD-~~~~~~~~~p~lttv~~~~~~~g~~A~~~l~~~i~g~~~~~~ 315 (343)
T PRK10727 237 NFTAVACYNDSMAAGAMGVLNDNGIDVPGEISLIGFD-DVLVSRYVRPRLTTVRYPIVTMATQAAELALALADNRPLPEI 315 (343)
T ss_pred CCCEEEEcCcHHHHHHHHHHHHcCCCCCcceeEEeec-CcHHHHhcCCCCeeeeCCHHHHHHHHHHHHHHHhcCCCCCCc
Confidence 4678999754 233 589999998 44455554332 23343 3333443332223322
Q ss_pred CCCCCccccccceE
Q 006817 194 GLAFDPDLVIRGLV 207 (630)
Q Consensus 194 ~L~yDp~F~iRGLv 207 (630)
.....|.+..|+-+
T Consensus 316 ~~~i~~~Li~R~S~ 329 (343)
T PRK10727 316 TNVFSPTLVRRHSV 329 (343)
T ss_pred cEEeCcEEEEecCC
Confidence 22345666666543
No 181
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=29.93 E-value=19 Score=33.73 Aligned_cols=16 Identities=31% Similarity=0.389 Sum_probs=13.5
Q ss_pred EEEEecccceeeeCcc
Q 006817 156 AIGYDMDYTLMHYNVM 171 (630)
Q Consensus 156 ~iGFDmDYTLa~Y~~~ 171 (630)
++-||||+||+...+.
T Consensus 1 ~vlFDlDgtLv~~~~~ 16 (183)
T TIGR01509 1 AILFDLDGVLVDTSSA 16 (183)
T ss_pred CeeeccCCceechHHH
Confidence 4679999999998764
No 182
>PRK06769 hypothetical protein; Validated
Probab=29.81 E-value=39 Score=32.73 Aligned_cols=45 Identities=16% Similarity=0.201 Sum_probs=27.4
Q ss_pred cCCccEEEEecccceeeeCccch-HHH-HHHHH---HHHHhhcCCCCCCC
Q 006817 151 LRSISAIGYDMDYTLMHYNVMAW-EGR-AYDYC---MVNLRNMGFPVEGL 195 (630)
Q Consensus 151 L~~I~~iGFDmDYTLa~Y~~~~~-e~L-~y~~~---~~~Lv~~gYP~~~L 195 (630)
|..|+++=||.|+||..+..-.+ ..+ .|.-+ ++.|.+.||+.-.+
T Consensus 1 ~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~ 50 (173)
T PRK06769 1 MTNIQAIFIDRDGTIGGDTTIHYPGSFTLFPFTKASLQKLKANHIKIFSF 50 (173)
T ss_pred CCCCcEEEEeCCCcccCCCCCCCHHHeEECCCHHHHHHHHHHCCCEEEEE
Confidence 56799999999999976632001 011 23333 45566778885433
No 183
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=29.25 E-value=27 Score=36.22 Aligned_cols=14 Identities=29% Similarity=0.622 Sum_probs=12.1
Q ss_pred EEEEecccceeeeC
Q 006817 156 AIGYDMDYTLMHYN 169 (630)
Q Consensus 156 ~iGFDmDYTLa~Y~ 169 (630)
+|+||+|+||+.=.
T Consensus 65 aViFDlDgTLlDSs 78 (237)
T TIGR01672 65 AVSFDIDDTVLFSS 78 (237)
T ss_pred EEEEeCCCccccCc
Confidence 89999999998643
No 184
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=29.22 E-value=76 Score=29.74 Aligned_cols=53 Identities=15% Similarity=0.227 Sum_probs=40.1
Q ss_pred cccccccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEE
Q 006817 320 PELFVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVI 381 (630)
Q Consensus 320 pekYI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVI 381 (630)
...+|.+-|.+..+|..+.+. ..+++.|.+.-.|++.+++.+. +. +.+|+-++
T Consensus 31 ~~~~v~~RP~l~~FL~~l~~~-~ev~i~T~~~~~ya~~v~~~ld-------p~-~~~~~~~~ 83 (159)
T PF03031_consen 31 GGYYVKLRPGLDEFLEELSKH-YEVVIWTSASEEYAEPVLDALD-------PN-GKLFSRRL 83 (159)
T ss_dssp EEEEEEE-TTHHHHHHHHHHH-CEEEEE-SS-HHHHHHHHHHHT-------TT-TSSEEEEE
T ss_pred cceeEeeCchHHHHHHHHHHh-ceEEEEEeehhhhhhHHHHhhh-------hh-cccccccc
Confidence 356778889999999998555 7899999999999999999884 22 56676666
No 185
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=28.61 E-value=1.5e+02 Score=29.31 Aligned_cols=24 Identities=25% Similarity=0.652 Sum_probs=17.5
Q ss_pred CCCeeEecCc-c-----------cc---CCccEEEEecc
Q 006817 139 SPRGIFCSRT-L-----------NL---RSISAIGYDMD 162 (630)
Q Consensus 139 ~~~~IF~Nr~-L-----------~L---~~I~~iGFDmD 162 (630)
.+..|||+.. + .+ ++|.++|||-+
T Consensus 177 ~~~ai~~~~d~~a~g~~~~l~~~g~~ip~di~v~g~d~~ 215 (268)
T cd06270 177 PFTAVFCANDEMAAGAISALREHGISVPQDVSIIGFDDV 215 (268)
T ss_pred CCCEEEEcCcHHHHHHHHHHHHcCCCCCCceeEEEecCc
Confidence 4678999864 1 22 58999999964
No 186
>PRK10671 copA copper exporting ATPase; Provisional
Probab=28.58 E-value=51 Score=39.97 Aligned_cols=35 Identities=17% Similarity=0.299 Sum_probs=29.4
Q ss_pred CCchHHHHHHHHhCCeEEEEeCCChHHHHHhhccc
Q 006817 328 PELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHS 362 (630)
Q Consensus 328 p~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl 362 (630)
|.....+.+|++.|.++.++|+.+-..+..+.+.+
T Consensus 653 ~~a~~~i~~L~~~gi~v~~~Tgd~~~~a~~ia~~l 687 (834)
T PRK10671 653 SDSVAALQRLHKAGYRLVMLTGDNPTTANAIAKEA 687 (834)
T ss_pred hhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHc
Confidence 34556788899999999999999999999888865
No 187
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=28.26 E-value=61 Score=31.35 Aligned_cols=38 Identities=21% Similarity=0.158 Sum_probs=22.5
Q ss_pred cEEEEecccceeeeCc-----cchHHH-HHHHH---HHHHhhcCCCC
Q 006817 155 SAIGYDMDYTLMHYNV-----MAWEGR-AYDYC---MVNLRNMGFPV 192 (630)
Q Consensus 155 ~~iGFDmDYTLa~Y~~-----~~~e~L-~y~~~---~~~Lv~~gYP~ 192 (630)
+++.||.|+||..=++ ...+.+ .|..+ +++|.+.||+.
T Consensus 2 ~~~~~d~dg~l~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~g~~l 48 (161)
T TIGR01261 2 KILFIDRDGTLIEEPPSDFQVDALEKLRFEKGVIPALLKLKKAGYKF 48 (161)
T ss_pred CEEEEeCCCCccccCCCccccCCHHHeeECCCHHHHHHHHHHCCCeE
Confidence 5789999999988222 222232 22333 45566678873
No 188
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=27.72 E-value=26 Score=33.05 Aligned_cols=14 Identities=29% Similarity=0.354 Sum_probs=11.9
Q ss_pred EEEEecccceeeeC
Q 006817 156 AIGYDMDYTLMHYN 169 (630)
Q Consensus 156 ~iGFDmDYTLa~Y~ 169 (630)
++-||+|+||+-..
T Consensus 1 ~viFD~DGTL~D~~ 14 (175)
T TIGR01493 1 AMVFDVYGTLVDVH 14 (175)
T ss_pred CeEEecCCcCcccH
Confidence 46799999999765
No 189
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=27.59 E-value=28 Score=35.40 Aligned_cols=39 Identities=21% Similarity=0.144 Sum_probs=25.3
Q ss_pred HHHHHHhCCCCCcEEEEcCccccchhccccc----cCc--eEEeeh
Q 006817 424 QMIENSLNIHGDEILYVGDHIYTDVSQSKVH----LRW--RTALIC 463 (630)
Q Consensus 424 ~~l~~llg~~G~~VLYfGDHIygDI~~sKk~----~gW--RT~aIV 463 (630)
..+.+.++.....++||||. ..|+---+.. .+| .++.|.
T Consensus 173 ~~~~~~~~~~~~~~i~iGD~-~~D~~~~~~~~~~~~~~g~~~v~v~ 217 (244)
T TIGR00685 173 KRLLWHQPGSGISPVYLGDD-ITDEDAFRVVNNQWGNYGFYPVPIG 217 (244)
T ss_pred HHHHHhcccCCCceEEEcCC-CcHHHHHHHHhcccCCCCeEEEEEe
Confidence 45566667777899999995 4576655543 233 466665
No 190
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=26.98 E-value=40 Score=34.01 Aligned_cols=29 Identities=21% Similarity=-0.126 Sum_probs=15.7
Q ss_pred EecccceeeeCccchHHHHHHHHHHHHhh
Q 006817 159 YDMDYTLMHYNVMAWEGRAYDYCMVNLRN 187 (630)
Q Consensus 159 FDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~ 187 (630)
||+|+||+-+............+++.|..
T Consensus 2 lDyDGTL~p~~~~p~~~~~~~~~~~~L~~ 30 (235)
T PF02358_consen 2 LDYDGTLAPIVDDPDAAVPPPELRELLRA 30 (235)
T ss_dssp EE-TTTSS---S-GGG----HHHHHHHHH
T ss_pred cccCCccCCCCCCccccCCCHHHHHHHHH
Confidence 79999999999876777777777776653
No 191
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=26.74 E-value=1.7e+02 Score=28.78 Aligned_cols=24 Identities=33% Similarity=0.667 Sum_probs=17.8
Q ss_pred CCCeeEecCc------------ccc---CCccEEEEecc
Q 006817 139 SPRGIFCSRT------------LNL---RSISAIGYDMD 162 (630)
Q Consensus 139 ~~~~IF~Nr~------------L~L---~~I~~iGFDmD 162 (630)
.+..|||... ..+ ++|.++|||.+
T Consensus 178 ~~~~i~~~~~~~a~~~~~al~~~g~~~p~di~iig~d~~ 216 (268)
T cd06289 178 RPTAIVCFNDLVAFGAMSGLRRAGLTPGRDIAVVGFDDV 216 (268)
T ss_pred CCCEEEEcCcHHHHHHHHHHHHcCCCCCcceEEEeecCc
Confidence 4678998755 223 48999999986
No 192
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=26.54 E-value=59 Score=33.09 Aligned_cols=29 Identities=17% Similarity=0.200 Sum_probs=23.5
Q ss_pred HHHHHHHhCCC--CCcEEEEcCccccchhccc
Q 006817 423 AQMIENSLNIH--GDEILYVGDHIYTDVSQSK 452 (630)
Q Consensus 423 ~~~l~~llg~~--G~~VLYfGDHIygDI~~sK 452 (630)
...+++.+|.. ..++++|||..= |+--.+
T Consensus 181 i~~l~~~~~i~~~~~~~~a~GD~~N-D~~Ml~ 211 (256)
T TIGR01486 181 ANALKQFYNQPGGAIKVVGLGDSPN-DLPLLE 211 (256)
T ss_pred HHHHHHHHhhcCCCceEEEEcCCHh-hHHHHH
Confidence 56788888888 889999999965 876555
No 193
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=26.39 E-value=56 Score=31.48 Aligned_cols=17 Identities=29% Similarity=0.272 Sum_probs=13.2
Q ss_pred CccEEEEecccceeeeCc
Q 006817 153 SISAIGYDMDYTLMHYNV 170 (630)
Q Consensus 153 ~I~~iGFDmDYTLa~Y~~ 170 (630)
-++++-||+|+|| ..+.
T Consensus 2 ~~~~~~~d~~~t~-~~~~ 18 (181)
T PRK08942 2 SMKAIFLDRDGVI-NVDS 18 (181)
T ss_pred CccEEEEECCCCc-ccCC
Confidence 4688999999998 4443
No 194
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=25.70 E-value=54 Score=32.66 Aligned_cols=45 Identities=18% Similarity=0.254 Sum_probs=33.0
Q ss_pred CCCHHHHHHHhC----CCCCcEEEEcCccccchhccccccCceEEeehHh
Q 006817 420 GGSAQMIENSLN----IHGDEILYVGDHIYTDVSQSKVHLRWRTALICRE 465 (630)
Q Consensus 420 gGn~~~l~~llg----~~G~~VLYfGDHIygDI~~sKk~~gWRT~aIVpE 465 (630)
+|....++.+.| ...++|+.|||-+|.||+-.... |--++.+-|=
T Consensus 121 ~ct~E~~~y~~~Nshv~~~se~~~vGDRlfTDI~~aN~m-Gs~gVw~~~g 169 (190)
T KOG2961|consen 121 ACTAEEVEYHFGNSHVCTSSELIMVGDRLFTDIVYANRM-GSLGVWTEPG 169 (190)
T ss_pred CccHHHHHHHhCCcccCChhHeEEEccchhhhHhhhhhc-cceeEEeccc
Confidence 556667777777 45789999999999999987654 5445555443
No 195
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=24.99 E-value=1.5e+02 Score=29.30 Aligned_cols=67 Identities=19% Similarity=0.275 Sum_probs=34.4
Q ss_pred CCCeeEecCcc------------cc---CCccEEEEeccc---------ceeeeCccchHHHHHHHHHHHHhhcCCCCCC
Q 006817 139 SPRGIFCSRTL------------NL---RSISAIGYDMDY---------TLMHYNVMAWEGRAYDYCMVNLRNMGFPVEG 194 (630)
Q Consensus 139 ~~~~IF~Nr~L------------~L---~~I~~iGFDmDY---------TLa~Y~~~~~e~L~y~~~~~~Lv~~gYP~~~ 194 (630)
.+..|||++.- .+ ++|.++|||..- |.+..++..+-..+++++.+.|.....|...
T Consensus 178 ~~~ai~~~~d~~a~~~~~~l~~~g~~~p~~i~v~~~d~~~~~~~~~~~~~~i~~~~~~~g~~a~~~l~~~l~~~~~~~~~ 257 (270)
T cd06296 178 RPTAIFAGNDLMALGVYEAARERGLRIPEDLSVVGFDDLPEARWVSPPLTTVRQPLREMGRAAVRLLLRLIEGEEPESRR 257 (270)
T ss_pred CCcEEEEcCcHHHHHHHHHHHHhCCCCCCceEEEEECChhhhcccCCCceEecCCHHHHHHHHHHHHHHHhcCCCCCCcc
Confidence 46789997642 22 589999999642 2233333333333444444444322233222
Q ss_pred CCCCccccccc
Q 006817 195 LAFDPDLVIRG 205 (630)
Q Consensus 195 L~yDp~F~iRG 205 (630)
....|.+..|+
T Consensus 258 ~~i~~~li~r~ 268 (270)
T cd06296 258 VELATELVVRD 268 (270)
T ss_pred eEecceEEeeC
Confidence 23455555553
No 196
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=24.74 E-value=61 Score=29.14 Aligned_cols=32 Identities=28% Similarity=0.413 Sum_probs=27.5
Q ss_pred cccceeeeCccchHHHHHHHHHHHHhhcCCCC
Q 006817 161 MDYTLMHYNVMAWEGRAYDYCMVNLRNMGFPV 192 (630)
Q Consensus 161 mDYTLa~Y~~~~~e~L~y~~~~~~Lv~~gYP~ 192 (630)
|=|||-.|+-.-+...+--...++|.+.|||.
T Consensus 24 mgyTlPeyR~~G~~~~v~~~~~~~L~~~g~P~ 55 (89)
T PF08444_consen 24 MGYTLPEYRGQGLMSQVMYHLAQYLHKLGFPF 55 (89)
T ss_pred ccccCHhHhcCCHHHHHHHHHHHHHHHCCCCe
Confidence 67999999988887777777778999999994
No 197
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=24.72 E-value=2e+02 Score=28.85 Aligned_cols=10 Identities=30% Similarity=0.634 Sum_probs=5.2
Q ss_pred CCCCCCCcEE
Q 006817 389 FFQMSHPLYE 398 (630)
Q Consensus 389 FF~~~~pf~~ 398 (630)
||.+..-||.
T Consensus 4 ~f~e~~~~y~ 13 (188)
T PF03962_consen 4 IFHESKDFYT 13 (188)
T ss_pred HHhhcCCccc
Confidence 5555555543
No 198
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=24.57 E-value=57 Score=31.59 Aligned_cols=33 Identities=21% Similarity=0.163 Sum_probs=0.0
Q ss_pred EEEecccceeeeCccchHHHHHHHHHHHHhhcCCC
Q 006817 157 IGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMGFP 191 (630)
Q Consensus 157 iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~~gYP 191 (630)
|-||+|+||+.-+.. +.+-.-+.+.+ |.+.|++
T Consensus 1 i~~DlDGTLl~~~~~-i~~~~~~al~~-l~~~g~~ 33 (254)
T PF08282_consen 1 IFSDLDGTLLNSDGK-ISPETIEALKE-LQEKGIK 33 (254)
T ss_dssp EEEECCTTTCSTTSS-SCHHHHHHHHH-HHHTTCE
T ss_pred cEEEECCceecCCCe-eCHHHHHHHHh-hcccceE
No 199
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=24.49 E-value=51 Score=36.91 Aligned_cols=16 Identities=38% Similarity=0.586 Sum_probs=13.9
Q ss_pred ccEEEEecccceeeeC
Q 006817 154 ISAIGYDMDYTLMHYN 169 (630)
Q Consensus 154 I~~iGFDmDYTLa~Y~ 169 (630)
++++=||||+||+.=.
T Consensus 241 ~k~vIFDlDGTLiDs~ 256 (459)
T PRK06698 241 LQALIFDMDGTLFQTD 256 (459)
T ss_pred hhheeEccCCceecch
Confidence 6899999999999843
No 200
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=24.41 E-value=29 Score=33.85 Aligned_cols=30 Identities=17% Similarity=0.215 Sum_probs=17.5
Q ss_pred EEEecccceeeeCccchHHHHHHHHHHHHhh-cCCC
Q 006817 157 IGYDMDYTLMHYNVMAWEGRAYDYCMVNLRN-MGFP 191 (630)
Q Consensus 157 iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~-~gYP 191 (630)
+-||||+||+-=.. .+.+...+.+.+ .|+|
T Consensus 1 iiFDlDGTL~Ds~~-----~~~~~~~~~~~~~~~~~ 31 (205)
T TIGR01454 1 VVFDLDGVLVDSFA-----VMREAFAIAYREVVGDG 31 (205)
T ss_pred CeecCcCccccCHH-----HHHHHHHHHHHHhcCCC
Confidence 46999999987432 233333333444 4665
No 201
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=23.24 E-value=65 Score=33.29 Aligned_cols=66 Identities=12% Similarity=0.138 Sum_probs=36.4
Q ss_pred CCCeeEecCcc-c---------c----CCccEEEEecccceeeeCccch-------HHHHHHH---HHHHHhhcCCCCCC
Q 006817 139 SPRGIFCSRTL-N---------L----RSISAIGYDMDYTLMHYNVMAW-------EGRAYDY---CMVNLRNMGFPVEG 194 (630)
Q Consensus 139 ~~~~IF~Nr~L-~---------L----~~I~~iGFDmDYTLa~Y~~~~~-------e~L~y~~---~~~~Lv~~gYP~~~ 194 (630)
.|..|||.+.. . + ++|.++||| |.-++.|-.|.+ +.++... +.+++.....+...
T Consensus 238 ~~~Ai~~~~D~~A~g~~~al~~~g~vP~dvsvigfd-~~~~~~~~~p~lTti~~~~~~~g~~a~~~l~~~i~~~~~~~~~ 316 (327)
T TIGR02417 238 LPQALFTTSYTLLEGVLDYMLERPLLDSQLHLATFG-DNYLLDFLPLPINSVAQQHRQLAWHALELALAAIDGKKPEPGQ 316 (327)
T ss_pred CCcEEEEcCcHHHHHHHHHHHHcCCCCCcceEEEEC-CchHHHccCCCceEEeCCHHHHHHHHHHHHHHHhcCCCCCCce
Confidence 36789998641 1 1 489999999 666666654433 4444433 33333221112222
Q ss_pred CCCCccccccc
Q 006817 195 LAFDPDLVIRG 205 (630)
Q Consensus 195 L~yDp~F~iRG 205 (630)
....|.+.+||
T Consensus 317 ~~i~~~li~r~ 327 (327)
T TIGR02417 317 RYIPRTLQIRH 327 (327)
T ss_pred EEeccEEEecC
Confidence 33567777776
No 202
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=23.19 E-value=1e+02 Score=37.75 Aligned_cols=95 Identities=14% Similarity=0.206 Sum_probs=61.8
Q ss_pred CCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeeCCCCccc
Q 006817 328 PELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEGLMR 407 (630)
Q Consensus 328 p~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A~KP~FF~~~~pf~~v~~~~g~l~ 407 (630)
|+.+..+.+++++|.++.++|+-+-.-+..+.+-+ | ..+.++.+|.+.. +...+. ..+.
T Consensus 531 ~~~~~~i~~l~~~Gi~v~miTGD~~~tA~~ia~~~-G--------i~~~~~~~v~g~~----------l~~~~~--~~l~ 589 (884)
T TIGR01522 531 PGVKEAVTTLITGGVRIIMITGDSQETAVSIARRL-G--------MPSKTSQSVSGEK----------LDAMDD--QQLS 589 (884)
T ss_pred hHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc-C--------CCCCCCceeEhHH----------hHhCCH--HHHH
Confidence 57889999999999999999999999999998766 2 1122333443221 101000 0111
Q ss_pred ccccCCCCccccCCCHHH---HHHHhCCCCCcEEEEcCccc
Q 006817 408 PCFKARTGGLYSGGSAQM---IENSLNIHGDEILYVGDHIY 445 (630)
Q Consensus 408 ~~~~l~~G~VYsgGn~~~---l~~llg~~G~~VLYfGDHIy 445 (630)
. .+.+..||+.=+..+ +-+.++..|..|+++||-+-
T Consensus 590 ~--~~~~~~Vfar~~P~~K~~iv~~lq~~g~~v~mvGDGvN 628 (884)
T TIGR01522 590 Q--IVPKVAVFARASPEHKMKIVKALQKRGDVVAMTGDGVN 628 (884)
T ss_pred H--HhhcCeEEEECCHHHHHHHHHHHHHCCCEEEEECCCcc
Confidence 1 134556887777664 44455667899999999764
No 203
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=22.59 E-value=71 Score=34.68 Aligned_cols=41 Identities=24% Similarity=0.284 Sum_probs=32.0
Q ss_pred CCCCCcEEEEcCccccchhccccccCceEEeehHhhHHHHHH
Q 006817 431 NIHGDEILYVGDHIYTDVSQSKVHLRWRTALICRELEEEYNA 472 (630)
Q Consensus 431 g~~G~~VLYfGDHIygDI~~sKk~~gWRT~aIVpELe~Ei~i 472 (630)
+..-++.|.|||-+=+||+--+. +|..|.+|.-=...|-.+
T Consensus 238 ~i~psRt~mvGDRL~TDIlFG~~-~G~~TLLvltGv~~led~ 278 (306)
T KOG2882|consen 238 NIDPSRTCMVGDRLDTDILFGKN-CGFKTLLVLSGVTTLEDI 278 (306)
T ss_pred CCCcceEEEEcccchhhhhHhhc-cCcceEEEecCcCcHHHH
Confidence 55678999999999999998764 799999997654444443
No 204
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=22.34 E-value=4.6e+02 Score=27.40 Aligned_cols=14 Identities=21% Similarity=0.396 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHH
Q 006817 478 GQRARLVELINQKE 491 (630)
Q Consensus 478 ~~~~~l~~L~~~~~ 491 (630)
+++++...|++++.
T Consensus 36 e~~kE~~~L~~Er~ 49 (230)
T PF10146_consen 36 EYRKEMEELLQERM 49 (230)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444555554443
No 205
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=22.18 E-value=56 Score=37.95 Aligned_cols=40 Identities=20% Similarity=0.375 Sum_probs=25.6
Q ss_pred CCccEEEEecccceeeeCc--------cchHHHHHHHHHHH---HhhcCCCC
Q 006817 152 RSISAIGYDMDYTLMHYNV--------MAWEGRAYDYCMVN---LRNMGFPV 192 (630)
Q Consensus 152 ~~I~~iGFDmDYTLa~Y~~--------~~~e~L~y~~~~~~---Lv~~gYP~ 192 (630)
...+++.||+|+||+.-++ ..|+ +.|..+.+. |.+.||+.
T Consensus 166 ~~~Kia~fD~DGTLi~t~sg~~~~~~~~d~~-~l~pgV~e~L~~L~~~Gy~I 216 (526)
T TIGR01663 166 GQEKIAGFDLDGTIIKTKSGKVFPKGPDDWQ-IIFPEIPEKLKELEADGFKI 216 (526)
T ss_pred ccCcEEEEECCCCccccCCCccCCCCHHHee-ecccCHHHHHHHHHHCCCEE
Confidence 5679999999999997543 1121 234555444 45678873
No 206
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=21.95 E-value=72 Score=29.80 Aligned_cols=37 Identities=19% Similarity=0.247 Sum_probs=22.3
Q ss_pred cEEEEecccceeeeCccch----HHH-HHHH---HHHHHhhcCCC
Q 006817 155 SAIGYDMDYTLMHYNVMAW----EGR-AYDY---CMVNLRNMGFP 191 (630)
Q Consensus 155 ~~iGFDmDYTLa~Y~~~~~----e~L-~y~~---~~~~Lv~~gYP 191 (630)
+++-||+|+||+.=++..+ ..+ .|+. +++.|.+.||+
T Consensus 1 ~~~~~d~dgtl~~~~~~~~~~~~~~~~~~~g~~~~l~~Lk~~g~~ 45 (147)
T TIGR01656 1 PALFLDRDGVINEDTVSDYPRSLDDWQLRPGAVPALLTLRAAGYT 45 (147)
T ss_pred CeEEEeCCCceeccCCcccCCCHHHeEEcCChHHHHHHHHHCCCE
Confidence 4688999999998775322 111 2332 34455567776
No 207
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=21.84 E-value=1e+02 Score=29.79 Aligned_cols=41 Identities=20% Similarity=0.190 Sum_probs=27.8
Q ss_pred ccCCccEEEEecccceeeeCcc-chHHHHHHHHHHHHhhcCCCC
Q 006817 150 NLRSISAIGYDMDYTLMHYNVM-AWEGRAYDYCMVNLRNMGFPV 192 (630)
Q Consensus 150 ~L~~I~~iGFDmDYTLa~Y~~~-~~e~L~y~~~~~~Lv~~gYP~ 192 (630)
.-..++++-+|+|+||..++.. .+.. ...+++.|.+.|++.
T Consensus 21 ~~~~v~~vv~D~Dgtl~~~~~~~~~pg--v~e~L~~Lk~~g~~l 62 (170)
T TIGR01668 21 KKVGIKGVVLDKDNTLVYPDHNEAYPA--LRDWIEELKAAGRKL 62 (170)
T ss_pred HHCCCCEEEEecCCccccCCCCCcChh--HHHHHHHHHHcCCEE
Confidence 3468999999999999988752 2222 123455666777774
No 208
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=21.69 E-value=82 Score=30.56 Aligned_cols=32 Identities=25% Similarity=0.343 Sum_probs=0.0
Q ss_pred EEEecccceeeeCccchHHHHHHHHHHHHhhcC
Q 006817 157 IGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMG 189 (630)
Q Consensus 157 iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~~g 189 (630)
+-||+|+||+.-+......-.. .++++|.+.|
T Consensus 2 i~~D~DgTL~~~~~~~~~~~~~-~~l~~l~~~g 33 (204)
T TIGR01484 2 LFFDLDGTLLDPNAHELSPETI-EALERLREAG 33 (204)
T ss_pred EEEeCcCCCcCCCCCcCCHHHH-HHHHHHHHCC
No 209
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=20.82 E-value=72 Score=28.94 Aligned_cols=14 Identities=36% Similarity=0.472 Sum_probs=11.6
Q ss_pred EEEecccceeeeCc
Q 006817 157 IGYDMDYTLMHYNV 170 (630)
Q Consensus 157 iGFDmDYTLa~Y~~ 170 (630)
|-||+|+||+....
T Consensus 1 iifD~dgtL~d~~~ 14 (176)
T PF13419_consen 1 IIFDLDGTLVDTDP 14 (176)
T ss_dssp EEEESBTTTEEHHH
T ss_pred cEEECCCCcEeCHH
Confidence 46999999998764
No 210
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=20.68 E-value=97 Score=32.83 Aligned_cols=36 Identities=11% Similarity=0.043 Sum_probs=28.4
Q ss_pred CCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhccc
Q 006817 327 DPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHS 362 (630)
Q Consensus 327 dp~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl 362 (630)
-|....+|..+++.|.++|++||.+-...+..+..+
T Consensus 120 ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~L 155 (266)
T TIGR01533 120 VAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNL 155 (266)
T ss_pred CccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHH
Confidence 467788999999999999999999866655554444
No 211
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=20.62 E-value=1.8e+02 Score=28.63 Aligned_cols=24 Identities=38% Similarity=0.773 Sum_probs=17.6
Q ss_pred CCCeeEecCc------------ccc---CCccEEEEecc
Q 006817 139 SPRGIFCSRT------------LNL---RSISAIGYDMD 162 (630)
Q Consensus 139 ~~~~IF~Nr~------------L~L---~~I~~iGFDmD 162 (630)
.+..|||++. ..+ ++|.++|||..
T Consensus 178 ~~~ai~~~~d~~a~g~~~~l~~~g~~vp~di~vvg~d~~ 216 (269)
T cd06275 178 RPTAVFCGNDLMAMGALCAAQEAGLRVPQDLSIIGYDDI 216 (269)
T ss_pred CCcEEEECChHHHHHHHHHHHHcCCCCCcceEEEEeCCh
Confidence 4678999864 233 48999999964
No 212
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=20.03 E-value=83 Score=32.66 Aligned_cols=51 Identities=18% Similarity=0.183 Sum_probs=37.6
Q ss_pred CchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCC
Q 006817 329 ELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQM 392 (630)
Q Consensus 329 ~l~~~L~~lr~~GKKlFLiTNS~~~Yt~~~M~Yl~~~~l~~g~dWrd~FDvVIv~A~KP~FF~~ 392 (630)
.+..+|.++|+.|+|.-|.=|-.-+.- .+- ++ -+.-|.|.+-+=-|+|-..
T Consensus 96 ~~~~~i~~Ik~~G~kaGlalnP~T~~~-~l~-~~-----------l~~vD~VLvMsV~PGf~GQ 146 (229)
T PRK09722 96 QAFRLIDEIRRAGMKVGLVLNPETPVE-SIK-YY-----------IHLLDKITVMTVDPGFAGQ 146 (229)
T ss_pred hHHHHHHHHHHcCCCEEEEeCCCCCHH-HHH-HH-----------HHhcCEEEEEEEcCCCcch
Confidence 456788999999999998888765442 222 22 2467999999999999853
Done!