Query 006822
Match_columns 630
No_of_seqs 97 out of 106
Neff 3.6
Searched_HMMs 46136
Date Thu Mar 28 14:59:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006822.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006822hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1003 Actin filament-coating 100.0 7.7E-34 1.7E-38 275.4 19.8 188 367-575 2-199 (205)
2 PF00261 Tropomyosin: Tropomyo 100.0 1.6E-28 3.5E-33 242.7 21.3 214 341-575 1-231 (237)
3 PF12718 Tropomyosin_1: Tropom 99.2 3.3E-10 7.2E-15 106.3 14.0 107 332-438 33-142 (143)
4 PF00261 Tropomyosin: Tropomyo 99.2 8.2E-10 1.8E-14 110.1 16.7 216 289-522 2-231 (237)
5 PRK02224 chromosome segregatio 99.0 4.2E-05 9.2E-10 88.0 48.5 44 229-272 262-305 (880)
6 PRK02224 chromosome segregatio 99.0 1.5E-05 3.2E-10 91.7 42.9 186 335-528 510-700 (880)
7 TIGR02169 SMC_prok_A chromosom 98.8 0.00012 2.7E-09 85.0 39.9 54 209-262 151-207 (1164)
8 TIGR02168 SMC_prok_B chromosom 98.7 4E-05 8.7E-10 88.4 33.8 54 501-558 964-1017(1179)
9 COG1196 Smc Chromosome segrega 98.7 3.4E-05 7.4E-10 92.4 34.1 117 472-588 903-1032(1163)
10 TIGR00606 rad50 rad50. This fa 98.6 0.0012 2.6E-08 80.4 44.9 69 107-182 598-666 (1311)
11 TIGR02168 SMC_prok_B chromosom 98.6 0.00026 5.6E-09 81.9 37.3 56 499-554 969-1027(1179)
12 TIGR02169 SMC_prok_A chromosom 98.6 0.00047 1E-08 80.3 39.5 16 499-514 955-970 (1164)
13 TIGR00606 rad50 rad50. This fa 98.4 0.019 4.1E-07 70.3 46.8 55 244-298 575-629 (1311)
14 KOG0161 Myosin class II heavy 98.3 0.017 3.7E-07 72.9 44.6 344 219-575 951-1328(1930)
15 KOG0161 Myosin class II heavy 98.3 0.003 6.5E-08 79.4 38.1 135 428-569 1065-1210(1930)
16 COG1196 Smc Chromosome segrega 98.3 0.0041 8.8E-08 75.1 37.3 50 479-528 947-996 (1163)
17 KOG0971 Microtubule-associated 98.2 0.0022 4.7E-08 75.2 31.7 277 297-573 219-557 (1243)
18 PRK03918 chromosome segregatio 98.2 0.033 7.1E-07 64.4 45.7 36 459-494 548-583 (880)
19 KOG4674 Uncharacterized conser 98.1 0.041 9E-07 69.0 39.9 294 225-560 654-984 (1822)
20 PRK04863 mukB cell division pr 98.0 0.015 3.3E-07 72.1 35.3 62 204-265 272-333 (1486)
21 PHA02562 46 endonuclease subun 98.0 0.011 2.5E-07 64.6 30.8 127 424-550 298-433 (562)
22 KOG0976 Rho/Rac1-interacting s 97.9 0.02 4.2E-07 67.0 30.3 305 260-575 34-357 (1265)
23 PF12718 Tropomyosin_1: Tropom 97.9 0.00089 1.9E-08 63.4 16.6 139 378-566 2-140 (143)
24 PF05701 WEMBL: Weak chloropla 97.9 0.082 1.8E-06 59.3 35.0 330 228-572 58-424 (522)
25 KOG4674 Uncharacterized conser 97.9 0.2 4.3E-06 63.3 41.8 297 217-533 691-1035(1822)
26 KOG0994 Extracellular matrix g 97.8 0.03 6.6E-07 67.4 31.1 254 258-565 1494-1748(1758)
27 KOG1003 Actin filament-coating 97.8 0.0053 1.2E-07 61.6 21.2 184 333-519 3-196 (205)
28 PRK03918 chromosome segregatio 97.8 0.14 3E-06 59.4 47.5 8 74-81 134-141 (880)
29 PF10174 Cast: RIM-binding pro 97.7 0.21 4.5E-06 59.0 41.2 87 333-419 335-421 (775)
30 PF10174 Cast: RIM-binding pro 97.6 0.29 6.3E-06 57.8 40.3 198 324-531 228-451 (775)
31 PF07888 CALCOCO1: Calcium bin 97.6 0.24 5.3E-06 56.3 35.1 107 370-483 277-387 (546)
32 PF07888 CALCOCO1: Calcium bin 97.5 0.24 5.2E-06 56.4 31.4 48 430-477 281-328 (546)
33 PRK01156 chromosome segregatio 97.5 0.41 8.9E-06 56.2 45.0 26 146-171 195-220 (895)
34 KOG0996 Structural maintenance 97.4 0.6 1.3E-05 57.0 37.2 361 246-628 288-674 (1293)
35 PRK11637 AmiB activator; Provi 97.4 0.22 4.9E-06 54.0 28.6 104 305-419 43-148 (428)
36 KOG0994 Extracellular matrix g 97.3 0.22 4.7E-06 60.6 29.3 96 218-319 1334-1460(1758)
37 PRK04778 septation ring format 97.2 0.57 1.2E-05 53.1 36.3 128 333-466 255-385 (569)
38 KOG0971 Microtubule-associated 97.2 0.5 1.1E-05 56.5 29.8 299 229-562 235-553 (1243)
39 PF12128 DUF3584: Protein of u 97.1 1.2 2.6E-05 54.7 40.7 233 210-445 415-705 (1201)
40 KOG0996 Structural maintenance 97.0 0.43 9.3E-06 58.2 27.9 201 285-520 381-595 (1293)
41 PRK04863 mukB cell division pr 97.0 1.8 3.8E-05 54.8 37.9 40 536-575 553-592 (1486)
42 PF01576 Myosin_tail_1: Myosin 97.0 0.00018 3.9E-09 84.3 0.0 228 338-578 571-822 (859)
43 PF00038 Filament: Intermediat 96.8 0.72 1.6E-05 47.4 28.0 71 499-569 213-290 (312)
44 KOG0933 Structural maintenance 96.8 2 4.3E-05 52.2 41.6 67 233-299 407-473 (1174)
45 KOG0250 DNA repair protein RAD 96.8 2 4.3E-05 52.4 31.0 38 562-599 531-570 (1074)
46 KOG0933 Structural maintenance 96.8 2.1 4.5E-05 52.0 33.5 314 199-559 148-504 (1174)
47 PRK01156 chromosome segregatio 96.7 2 4.4E-05 50.6 35.5 29 154-182 415-443 (895)
48 PF09726 Macoilin: Transmembra 96.6 0.27 6E-06 57.3 21.7 219 216-478 419-654 (697)
49 KOG0995 Centromere-associated 96.5 2.2 4.7E-05 49.1 33.5 317 223-560 204-547 (581)
50 PRK11637 AmiB activator; Provi 96.5 1.6 3.4E-05 47.6 25.4 34 528-561 220-253 (428)
51 PF12128 DUF3584: Protein of u 96.4 4.1 8.9E-05 50.3 44.2 139 429-574 604-758 (1201)
52 PF05701 WEMBL: Weak chloropla 96.4 2.5 5.5E-05 47.7 38.5 217 208-453 197-414 (522)
53 PHA02562 46 endonuclease subun 96.4 1.2 2.7E-05 49.0 24.0 36 147-182 173-208 (562)
54 KOG0250 DNA repair protein RAD 96.4 4 8.7E-05 49.9 29.8 34 529-562 431-464 (1074)
55 KOG0977 Nuclear envelope prote 96.3 2 4.2E-05 49.3 25.3 86 334-419 120-219 (546)
56 PF09726 Macoilin: Transmembra 96.1 2.3 4.9E-05 50.0 25.4 58 499-556 591-651 (697)
57 KOG0612 Rho-associated, coiled 96.0 5.3 0.00012 49.5 28.1 89 341-433 508-596 (1317)
58 PF05557 MAD: Mitotic checkpoi 95.8 0.0024 5.1E-08 73.4 0.0 196 370-580 224-431 (722)
59 KOG0978 E3 ubiquitin ligase in 95.7 6.2 0.00013 46.6 35.3 224 272-521 376-613 (698)
60 KOG0946 ER-Golgi vesicle-tethe 95.6 0.51 1.1E-05 55.8 17.5 123 368-491 691-816 (970)
61 PF01576 Myosin_tail_1: Myosin 95.6 0.0034 7.4E-08 73.9 0.0 210 232-452 187-404 (859)
62 PF06008 Laminin_I: Laminin Do 95.5 3.4 7.3E-05 42.3 22.8 208 229-448 49-257 (264)
63 KOG0977 Nuclear envelope prote 95.5 3.1 6.8E-05 47.7 22.8 302 146-512 47-387 (546)
64 KOG0946 ER-Golgi vesicle-tethe 95.4 3.1 6.7E-05 49.7 22.4 106 280-392 645-760 (970)
65 PF06160 EzrA: Septation ring 95.2 7.6 0.00016 44.3 36.9 150 333-491 251-403 (560)
66 PF14915 CCDC144C: CCDC144C pr 94.7 7.6 0.00016 41.8 26.6 179 380-575 88-291 (305)
67 PF12777 MT: Microtubule-bindi 94.4 4.1 8.9E-05 43.5 19.1 96 469-571 216-314 (344)
68 TIGR03185 DNA_S_dndD DNA sulfu 94.3 13 0.00028 42.9 26.1 40 142-181 210-249 (650)
69 PRK04778 septation ring format 94.3 12 0.00027 42.6 35.6 289 268-574 99-430 (569)
70 PF05483 SCP-1: Synaptonemal c 94.2 16 0.00034 43.4 35.5 85 369-475 349-437 (786)
71 PF00038 Filament: Intermediat 94.1 8.2 0.00018 39.8 32.2 56 499-554 227-282 (312)
72 TIGR03007 pepcterm_ChnLen poly 94.1 6.6 0.00014 43.2 20.3 35 543-577 350-384 (498)
73 PF14662 CCDC155: Coiled-coil 94.0 0.91 2E-05 45.9 12.4 115 462-576 3-123 (193)
74 PF05911 DUF869: Plant protein 94.0 14 0.00031 44.2 23.9 28 482-516 734-761 (769)
75 KOG0995 Centromere-associated 93.9 16 0.00034 42.5 30.2 87 255-357 195-282 (581)
76 PF10473 CENP-F_leu_zip: Leuci 93.8 4.9 0.00011 38.8 16.4 93 326-419 10-102 (140)
77 COG1579 Zn-ribbon protein, pos 93.7 2.7 5.8E-05 43.8 15.4 62 338-399 21-82 (239)
78 PF05557 MAD: Mitotic checkpoi 93.7 0.019 4.1E-07 66.2 0.0 141 370-517 275-428 (722)
79 PF05010 TACC: Transforming ac 93.5 10 0.00022 38.8 22.2 193 372-574 5-201 (207)
80 COG1579 Zn-ribbon protein, pos 93.4 12 0.00025 39.2 19.9 26 532-557 147-172 (239)
81 PF05667 DUF812: Protein of un 93.2 21 0.00045 41.6 24.2 76 499-574 444-531 (594)
82 PRK09039 hypothetical protein; 93.2 14 0.00031 39.9 20.5 33 459-491 136-168 (343)
83 KOG0963 Transcription factor/C 93.2 22 0.00047 41.7 35.6 186 208-414 55-273 (629)
84 PF10168 Nup88: Nuclear pore c 93.1 1 2.2E-05 52.9 12.7 140 431-577 575-714 (717)
85 PRK09039 hypothetical protein; 93.1 5.7 0.00012 42.8 17.3 12 580-591 263-274 (343)
86 PRK11281 hypothetical protein; 93.1 6.4 0.00014 48.7 19.6 32 491-522 281-312 (1113)
87 PLN02939 transferase, transfer 92.9 20 0.00043 44.0 23.0 198 337-578 166-399 (977)
88 KOG0018 Structural maintenance 92.8 32 0.0007 42.6 27.1 220 335-581 677-910 (1141)
89 PF14915 CCDC144C: CCDC144C pr 92.5 18 0.00039 39.0 22.9 149 244-404 75-228 (305)
90 KOG0976 Rho/Rac1-interacting s 91.9 37 0.0008 41.3 33.2 277 230-527 97-383 (1265)
91 PRK10929 putative mechanosensi 91.9 39 0.00085 42.2 24.1 30 492-521 262-291 (1109)
92 TIGR01005 eps_transp_fam exopo 91.7 27 0.00059 40.7 21.7 192 367-578 192-406 (754)
93 PF05622 HOOK: HOOK protein; 91.6 0.084 1.8E-06 61.0 1.6 173 370-572 240-415 (713)
94 TIGR00634 recN DNA repair prot 91.2 30 0.00065 39.4 20.9 9 589-597 420-428 (563)
95 PF04012 PspA_IM30: PspA/IM30 91.2 17 0.00037 36.0 17.5 18 503-520 166-183 (221)
96 PF08317 Spc7: Spc7 kinetochor 91.1 13 0.00029 39.4 17.2 52 253-309 126-177 (325)
97 KOG0018 Structural maintenance 90.4 40 0.00086 41.9 21.7 227 256-513 237-476 (1141)
98 KOG0612 Rho-associated, coiled 90.2 61 0.0013 40.9 34.2 81 217-297 436-531 (1317)
99 TIGR03007 pepcterm_ChnLen poly 90.2 24 0.00052 38.9 18.7 19 333-351 274-292 (498)
100 PF05622 HOOK: HOOK protein; 90.1 0.17 3.6E-06 58.6 2.2 49 401-449 485-533 (713)
101 PF05911 DUF869: Plant protein 89.9 52 0.0011 39.7 24.9 122 368-510 595-716 (769)
102 PF15070 GOLGA2L5: Putative go 89.8 47 0.001 39.0 32.1 101 486-586 291-398 (617)
103 PF14662 CCDC155: Coiled-coil 89.5 26 0.00057 35.7 19.0 144 333-480 35-185 (193)
104 PF06008 Laminin_I: Laminin Do 89.4 28 0.0006 35.8 27.9 86 336-421 47-144 (264)
105 PLN03188 kinesin-12 family pro 89.4 72 0.0016 40.5 25.9 119 453-573 1121-1250(1320)
106 PF10473 CENP-F_leu_zip: Leuci 88.9 23 0.00051 34.3 16.4 92 412-517 11-102 (140)
107 PF13851 GAS: Growth-arrest sp 88.6 26 0.00056 35.3 16.0 99 458-556 17-129 (201)
108 KOG0963 Transcription factor/C 88.4 59 0.0013 38.3 33.1 370 92-514 11-402 (629)
109 PF11559 ADIP: Afadin- and alp 87.9 15 0.00033 34.6 13.2 34 458-491 57-90 (151)
110 TIGR03185 DNA_S_dndD DNA sulfu 87.9 59 0.0013 37.7 29.8 123 268-396 160-289 (650)
111 PF15070 GOLGA2L5: Putative go 87.8 63 0.0014 38.0 31.0 141 267-418 167-314 (617)
112 COG5185 HEC1 Protein involved 87.8 59 0.0013 37.5 29.0 327 209-558 218-586 (622)
113 PF00769 ERM: Ezrin/radixin/mo 87.5 15 0.00032 38.0 13.9 122 347-489 4-125 (246)
114 TIGR02977 phageshock_pspA phag 87.1 36 0.00077 34.3 19.3 50 339-388 29-78 (219)
115 TIGR01005 eps_transp_fam exopo 86.6 73 0.0016 37.3 23.0 31 369-399 237-267 (754)
116 PF07926 TPR_MLP1_2: TPR/MLP1/ 86.4 28 0.00061 32.5 17.7 73 501-573 58-130 (132)
117 PF15397 DUF4618: Domain of un 86.4 49 0.0011 35.1 17.5 143 392-572 8-155 (258)
118 KOG4593 Mitotic checkpoint pro 85.9 86 0.0019 37.5 37.1 144 277-420 115-274 (716)
119 KOG0249 LAR-interacting protei 85.4 49 0.0011 39.8 17.8 123 378-512 65-187 (916)
120 PRK10869 recombination and rep 85.0 79 0.0017 36.3 25.2 40 423-477 294-334 (553)
121 TIGR01843 type_I_hlyD type I s 84.9 56 0.0012 34.5 20.0 39 546-584 244-282 (423)
122 KOG0982 Centrosomal protein Nu 84.6 80 0.0017 36.0 19.6 162 368-573 249-428 (502)
123 smart00787 Spc7 Spc7 kinetocho 83.9 26 0.00056 37.7 14.0 46 253-303 121-166 (312)
124 KOG0979 Structural maintenance 83.6 1.3E+02 0.0028 37.6 23.0 221 334-570 181-407 (1072)
125 COG3883 Uncharacterized protei 83.5 67 0.0015 34.3 18.5 62 499-572 166-227 (265)
126 PF15619 Lebercilin: Ciliary p 82.6 57 0.0012 32.9 19.6 23 469-491 120-142 (194)
127 PLN02939 transferase, transfer 81.9 1.5E+02 0.0032 37.0 21.3 51 468-528 352-402 (977)
128 PF05667 DUF812: Protein of un 81.7 1.2E+02 0.0025 35.8 21.5 39 520-558 488-529 (594)
129 KOG0980 Actin-binding protein 81.7 1.4E+02 0.0031 36.8 27.6 63 340-402 388-450 (980)
130 PF09787 Golgin_A5: Golgin sub 80.3 1.1E+02 0.0024 34.7 28.2 65 499-572 366-430 (511)
131 PRK10884 SH3 domain-containing 79.6 20 0.00044 36.4 10.8 25 338-362 90-114 (206)
132 PF11559 ADIP: Afadin- and alp 79.3 57 0.0012 30.7 15.1 89 364-477 61-150 (151)
133 PRK10698 phage shock protein P 79.0 80 0.0017 32.3 20.9 13 474-486 173-185 (222)
134 KOG0249 LAR-interacting protei 78.7 1E+02 0.0022 37.3 17.2 81 332-417 103-183 (916)
135 TIGR01843 type_I_hlyD type I s 78.5 94 0.002 32.8 17.8 9 619-627 387-395 (423)
136 PF10481 CENP-F_N: Cenp-F N-te 78.4 79 0.0017 34.2 14.9 99 349-489 40-138 (307)
137 TIGR02680 conserved hypothetic 78.2 2.1E+02 0.0045 36.6 30.4 123 308-438 222-346 (1353)
138 TIGR01010 BexC_CtrB_KpsE polys 77.7 72 0.0016 34.0 14.8 138 251-403 168-305 (362)
139 PF08614 ATG16: Autophagy prot 77.7 17 0.00036 35.9 9.4 108 287-412 73-180 (194)
140 TIGR00634 recN DNA repair prot 77.5 1.4E+02 0.003 34.2 22.1 17 422-438 298-314 (563)
141 COG1340 Uncharacterized archae 77.4 1.1E+02 0.0024 33.1 30.4 211 341-574 34-247 (294)
142 PF07926 TPR_MLP1_2: TPR/MLP1/ 77.2 64 0.0014 30.2 14.7 9 490-498 114-122 (132)
143 PF04156 IncA: IncA protein; 77.2 73 0.0016 30.8 13.7 10 310-319 82-91 (191)
144 TIGR03017 EpsF chain length de 77.0 1.2E+02 0.0025 33.0 19.5 46 505-551 321-366 (444)
145 KOG4673 Transcription factor T 76.8 1.8E+02 0.004 35.2 34.3 104 368-486 522-631 (961)
146 PF05266 DUF724: Protein of un 76.6 57 0.0012 32.9 12.9 110 286-396 77-186 (190)
147 COG0419 SbcC ATPase involved i 76.2 1.9E+02 0.0041 35.1 48.1 73 52-124 118-195 (908)
148 PF00769 ERM: Ezrin/radixin/mo 75.8 98 0.0021 32.1 14.7 110 375-491 4-113 (246)
149 smart00787 Spc7 Spc7 kinetocho 75.7 76 0.0016 34.2 14.3 58 357-414 206-263 (312)
150 KOG4438 Centromere-associated 75.6 1.5E+02 0.0033 33.7 28.2 167 400-570 219-429 (446)
151 KOG0978 E3 ubiquitin ligase in 75.3 1.9E+02 0.0042 34.8 43.8 81 499-579 528-625 (698)
152 PRK10884 SH3 domain-containing 75.0 31 0.00068 35.1 10.7 38 367-404 130-167 (206)
153 PF13747 DUF4164: Domain of un 74.2 35 0.00075 30.5 9.5 44 372-415 35-78 (89)
154 PF14073 Cep57_CLD: Centrosome 74.1 1.1E+02 0.0023 31.2 17.2 145 336-522 6-154 (178)
155 PRK10476 multidrug resistance 73.8 1.2E+02 0.0027 31.9 15.4 35 407-442 135-169 (346)
156 PF04156 IncA: IncA protein; 73.4 56 0.0012 31.6 11.6 43 374-416 107-149 (191)
157 PF05335 DUF745: Protein of un 73.2 1.1E+02 0.0024 31.0 15.7 113 318-448 62-174 (188)
158 PF13851 GAS: Growth-arrest sp 72.9 1.1E+02 0.0024 30.9 18.1 53 306-358 27-79 (201)
159 PF12325 TMF_TATA_bd: TATA ele 72.8 86 0.0019 29.6 12.2 98 458-570 21-118 (120)
160 TIGR02680 conserved hypothetic 72.3 2.9E+02 0.0063 35.4 29.9 30 99-128 424-453 (1353)
161 PF15294 Leu_zip: Leucine zipp 72.1 34 0.00075 36.6 10.5 94 465-558 130-239 (278)
162 KOG0239 Kinesin (KAR3 subfamil 71.9 2.2E+02 0.0048 34.0 21.9 188 427-626 177-395 (670)
163 PF06160 EzrA: Septation ring 71.6 2E+02 0.0043 33.2 36.7 189 246-441 75-268 (560)
164 COG0419 SbcC ATPase involved i 71.3 2.4E+02 0.0053 34.2 48.3 21 104-124 271-291 (908)
165 KOG0804 Cytoplasmic Zn-finger 70.6 34 0.00074 38.9 10.5 26 499-524 365-390 (493)
166 KOG1029 Endocytic adaptor prot 70.2 2.7E+02 0.0059 34.3 29.1 92 334-432 444-535 (1118)
167 KOG1655 Protein involved in va 68.5 98 0.0021 32.1 12.3 94 474-574 19-152 (218)
168 COG4942 Membrane-bound metallo 67.9 2.2E+02 0.0048 32.4 24.1 53 333-385 58-110 (420)
169 PF08614 ATG16: Autophagy prot 67.6 52 0.0011 32.5 10.2 60 462-521 69-128 (194)
170 PRK09841 cryptic autophosphory 67.5 2.4E+02 0.0053 33.3 17.2 140 238-403 252-397 (726)
171 PF10146 zf-C4H2: Zinc finger- 67.4 86 0.0019 32.6 12.0 62 516-577 39-103 (230)
172 PF04912 Dynamitin: Dynamitin 67.1 1.4E+02 0.003 32.6 14.2 20 115-134 33-52 (388)
173 PRK10929 putative mechanosensi 67.0 3.5E+02 0.0076 34.3 30.9 31 424-454 278-308 (1109)
174 KOG1853 LIS1-interacting prote 66.9 1E+02 0.0022 33.2 12.5 38 375-412 90-127 (333)
175 PF06120 Phage_HK97_TLTM: Tail 65.6 79 0.0017 34.2 11.7 81 333-413 87-171 (301)
176 PF15619 Lebercilin: Ciliary p 65.6 1.6E+02 0.0034 29.8 22.2 173 341-557 12-187 (194)
177 PF15294 Leu_zip: Leucine zipp 65.3 1E+02 0.0022 33.1 12.4 75 370-444 126-209 (278)
178 PRK11519 tyrosine kinase; Prov 65.0 2E+02 0.0042 34.1 15.7 61 332-403 337-397 (719)
179 PF12325 TMF_TATA_bd: TATA ele 63.4 1.4E+02 0.003 28.3 13.2 68 368-446 22-89 (120)
180 PF08826 DMPK_coil: DMPK coile 63.1 37 0.0008 28.8 7.0 46 345-390 15-60 (61)
181 PF06810 Phage_GP20: Phage min 63.1 1E+02 0.0022 30.1 11.0 65 335-399 14-81 (155)
182 KOG0980 Actin-binding protein 63.0 3.8E+02 0.0083 33.4 23.6 123 363-520 397-519 (980)
183 PF07889 DUF1664: Protein of u 63.0 1.1E+02 0.0024 29.3 10.9 84 337-437 39-122 (126)
184 PF05483 SCP-1: Synaptonemal c 62.9 3.5E+02 0.0076 32.9 37.3 350 208-574 113-525 (786)
185 smart00338 BRLZ basic region l 62.8 45 0.00097 27.4 7.4 49 516-564 15-63 (65)
186 PF05266 DUF724: Protein of un 62.5 1.6E+02 0.0036 29.7 12.7 78 334-411 96-173 (190)
187 PF08647 BRE1: BRE1 E3 ubiquit 62.0 44 0.00095 29.9 7.7 59 229-287 7-65 (96)
188 TIGR02338 gimC_beta prefoldin, 62.0 1.1E+02 0.0024 27.8 10.4 39 529-567 69-107 (110)
189 KOG0964 Structural maintenance 61.9 4.2E+02 0.0092 33.5 32.5 133 279-418 228-370 (1200)
190 PRK11281 hypothetical protein; 61.8 4.3E+02 0.0093 33.6 37.0 58 244-301 126-183 (1113)
191 PF10168 Nup88: Nuclear pore c 61.6 2.3E+02 0.0049 34.1 15.5 116 207-326 538-656 (717)
192 PF05278 PEARLI-4: Arabidopsis 61.2 2.4E+02 0.0052 30.4 14.9 54 334-387 207-260 (269)
193 PF03962 Mnd1: Mnd1 family; I 60.9 88 0.0019 31.3 10.4 89 332-438 60-148 (188)
194 COG4942 Membrane-bound metallo 60.9 3E+02 0.0064 31.4 27.6 48 371-418 61-108 (420)
195 KOG1853 LIS1-interacting prote 60.6 2.5E+02 0.0054 30.4 19.8 78 391-481 28-105 (333)
196 TIGR02977 phageshock_pspA phag 60.6 1.9E+02 0.0042 29.1 14.9 44 529-572 101-144 (219)
197 TIGR00998 8a0101 efflux pump m 60.5 2.1E+02 0.0046 29.6 15.6 61 377-441 102-162 (334)
198 PRK00846 hypothetical protein; 60.0 55 0.0012 29.0 7.8 49 527-575 13-61 (77)
199 cd00632 Prefoldin_beta Prefold 59.7 1.3E+02 0.0028 26.9 10.4 38 529-566 65-102 (105)
200 KOG0804 Cytoplasmic Zn-finger 59.4 1.8E+02 0.0038 33.5 13.3 21 108-128 87-107 (493)
201 PF01920 Prefoldin_2: Prefoldi 59.0 1.2E+02 0.0026 26.2 10.4 67 499-565 9-100 (106)
202 PF08317 Spc7: Spc7 kinetochor 58.7 2.6E+02 0.0056 30.0 21.6 63 328-390 203-265 (325)
203 PF15456 Uds1: Up-regulated Du 58.2 1.5E+02 0.0032 28.2 10.9 74 332-405 20-117 (124)
204 COG1842 PspA Phage shock prote 58.0 2.4E+02 0.0051 29.3 18.5 19 427-445 122-140 (225)
205 KOG1029 Endocytic adaptor prot 57.5 4.6E+02 0.01 32.5 24.3 133 426-572 452-598 (1118)
206 PF04102 SlyX: SlyX; InterPro 57.2 44 0.00095 28.3 6.5 47 529-575 6-52 (69)
207 TIGR02132 phaR_Bmeg polyhydrox 57.1 1E+02 0.0023 31.4 10.1 90 323-412 61-150 (189)
208 KOG4643 Uncharacterized coiled 56.0 5.3E+02 0.011 32.8 27.7 34 529-562 525-558 (1195)
209 PF07106 TBPIP: Tat binding pr 55.8 75 0.0016 30.6 8.7 84 310-393 34-133 (169)
210 TIGR01000 bacteriocin_acc bact 55.6 3.3E+02 0.0071 30.2 22.0 82 504-585 238-328 (457)
211 KOG0982 Centrosomal protein Nu 54.4 4E+02 0.0086 30.8 17.3 153 369-559 222-392 (502)
212 PRK00295 hypothetical protein; 54.1 58 0.0013 27.8 6.8 47 529-575 7-53 (68)
213 COG2433 Uncharacterized conser 53.7 1.7E+02 0.0037 34.8 12.4 70 334-403 436-508 (652)
214 TIGR01000 bacteriocin_acc bact 52.8 3.6E+02 0.0079 29.9 20.6 25 500-524 289-313 (457)
215 PF05546 She9_MDM33: She9 / Md 52.7 2.9E+02 0.0063 28.7 14.7 61 368-428 31-95 (207)
216 COG1842 PspA Phage shock prote 52.6 2.9E+02 0.0063 28.7 15.7 54 426-479 25-78 (225)
217 PRK00736 hypothetical protein; 51.8 77 0.0017 27.0 7.2 47 529-575 7-53 (68)
218 PF06005 DUF904: Protein of un 51.8 58 0.0013 28.3 6.5 47 529-575 6-52 (72)
219 KOG4643 Uncharacterized coiled 51.4 6.2E+02 0.013 32.2 33.4 41 535-575 489-529 (1195)
220 TIGR02338 gimC_beta prefoldin, 51.3 1.7E+02 0.0036 26.6 9.7 76 427-521 26-107 (110)
221 PF00170 bZIP_1: bZIP transcri 51.1 1.1E+02 0.0023 25.1 7.8 48 517-564 16-63 (64)
222 PRK11085 magnesium/nickel/coba 51.1 40 0.00086 36.3 6.6 76 96-182 128-203 (316)
223 PF09728 Taxilin: Myosin-like 50.2 3.6E+02 0.0078 29.1 29.1 80 489-568 203-299 (309)
224 KOG0993 Rab5 GTPase effector R 49.8 95 0.0021 35.4 9.3 72 396-482 106-177 (542)
225 COG1566 EmrA Multidrug resista 49.6 3E+02 0.0066 30.4 13.0 98 342-442 99-207 (352)
226 PRK04325 hypothetical protein; 49.6 73 0.0016 27.6 6.8 47 529-575 11-57 (74)
227 PF04108 APG17: Autophagy prot 49.3 4.1E+02 0.009 29.5 26.2 89 268-358 116-216 (412)
228 PTZ00464 SNF-7-like protein; P 48.5 1.4E+02 0.003 30.6 9.7 73 477-559 21-93 (211)
229 PF13870 DUF4201: Domain of un 48.4 2.7E+02 0.0057 27.0 17.0 109 307-418 18-140 (177)
230 KOG0962 DNA repair protein RAD 47.8 7.5E+02 0.016 32.1 30.9 128 143-295 821-955 (1294)
231 PF05546 She9_MDM33: She9 / Md 47.8 3.5E+02 0.0075 28.2 12.7 50 321-372 21-70 (207)
232 TIGR00293 prefoldin, archaeal 47.7 80 0.0017 28.8 7.2 44 530-573 82-125 (126)
233 COG4477 EzrA Negative regulato 47.0 5.6E+02 0.012 30.3 28.0 273 248-624 276-554 (570)
234 PLN03229 acetyl-coenzyme A car 46.6 6.1E+02 0.013 31.1 15.6 62 338-437 646-707 (762)
235 PRK09343 prefoldin subunit bet 46.2 2.5E+02 0.0055 26.2 10.8 40 529-568 73-112 (121)
236 COG1382 GimC Prefoldin, chaper 46.0 1.1E+02 0.0024 29.1 8.0 72 428-511 30-107 (119)
237 PF04728 LPP: Lipoprotein leuc 45.9 1E+02 0.0023 26.0 6.8 33 364-396 19-51 (56)
238 PF04012 PspA_IM30: PspA/IM30 45.7 3.2E+02 0.0069 27.2 21.3 53 345-397 27-79 (221)
239 KOG0962 DNA repair protein RAD 45.7 8.1E+02 0.018 31.9 37.3 33 489-521 532-564 (1294)
240 PF12329 TMF_DNA_bd: TATA elem 45.6 1.4E+02 0.0029 25.9 7.8 62 333-394 11-72 (74)
241 PF10212 TTKRSYEDQ: Predicted 45.5 5.7E+02 0.012 30.0 18.9 25 467-491 420-444 (518)
242 PRK02793 phi X174 lysis protei 45.5 1.1E+02 0.0023 26.4 7.2 48 528-575 9-56 (72)
243 PF11471 Sugarporin_N: Maltopo 45.2 34 0.00074 28.8 4.0 29 373-401 29-57 (60)
244 PF06818 Fez1: Fez1; InterPro 44.8 3.8E+02 0.0082 27.8 13.1 104 459-569 58-170 (202)
245 PF04582 Reo_sigmaC: Reovirus 44.6 40 0.00086 36.9 5.4 105 264-386 32-136 (326)
246 PF09403 FadA: Adhesion protei 44.3 3E+02 0.0064 26.4 10.7 70 506-575 24-102 (126)
247 PRK02119 hypothetical protein; 44.0 1E+02 0.0022 26.7 6.8 48 528-575 10-57 (73)
248 PF10234 Cluap1: Clusterin-ass 43.9 4.4E+02 0.0095 28.3 13.3 117 222-356 123-240 (267)
249 COG3096 MukB Uncharacterized p 43.1 7.6E+02 0.016 30.8 26.9 146 332-481 834-998 (1480)
250 PF10186 Atg14: UV radiation r 42.9 3.7E+02 0.008 27.1 19.9 48 469-523 58-105 (302)
251 PF04111 APG6: Autophagy prote 42.8 2.6E+02 0.0057 30.1 11.1 70 338-407 61-137 (314)
252 PF02994 Transposase_22: L1 tr 42.7 35 0.00076 37.3 4.8 50 372-421 140-189 (370)
253 PRK10361 DNA recombination pro 42.3 6E+02 0.013 29.4 17.0 102 394-513 96-197 (475)
254 PRK04406 hypothetical protein; 42.3 1.7E+02 0.0037 25.5 8.0 48 528-575 12-59 (75)
255 PF06548 Kinesin-related: Kine 42.1 6.1E+02 0.013 29.5 21.2 135 291-442 101-239 (488)
256 PF04111 APG6: Autophagy prote 42.0 3.2E+02 0.007 29.4 11.6 50 333-382 42-91 (314)
257 PF05010 TACC: Transforming ac 41.7 4.1E+02 0.009 27.4 24.1 37 485-528 140-180 (207)
258 PF00435 Spectrin: Spectrin re 41.7 1.9E+02 0.0042 23.5 11.6 80 337-418 4-87 (105)
259 PF12795 MscS_porin: Mechanose 41.0 4.1E+02 0.0088 27.1 21.0 147 242-407 81-228 (240)
260 PF03915 AIP3: Actin interacti 40.5 5.1E+02 0.011 29.5 13.3 117 449-588 213-332 (424)
261 KOG1899 LAR transmembrane tyro 40.4 7.6E+02 0.016 30.1 20.2 63 334-396 104-166 (861)
262 PRK10869 recombination and rep 40.3 6.4E+02 0.014 29.2 22.4 19 510-528 297-315 (553)
263 PF07544 Med9: RNA polymerase 40.3 67 0.0015 28.1 5.3 41 95-135 6-49 (83)
264 TIGR03017 EpsF chain length de 40.1 5.2E+02 0.011 28.1 22.9 32 546-577 340-371 (444)
265 PF12777 MT: Microtubule-bindi 40.0 89 0.0019 33.6 7.2 29 148-176 8-36 (344)
266 PF09755 DUF2046: Uncharacteri 39.8 5.5E+02 0.012 28.3 24.4 199 308-591 22-226 (310)
267 KOG4360 Uncharacterized coiled 39.0 7.2E+02 0.016 29.4 16.8 131 333-476 89-249 (596)
268 PRK10246 exonuclease subunit S 38.8 8.8E+02 0.019 30.3 31.7 22 425-446 777-798 (1047)
269 PF06548 Kinesin-related: Kine 38.7 6.9E+02 0.015 29.1 21.9 115 458-574 356-481 (488)
270 PRK09343 prefoldin subunit bet 38.7 3.3E+02 0.0072 25.4 10.6 77 427-522 30-112 (121)
271 PF14197 Cep57_CLD_2: Centroso 38.2 2.6E+02 0.0057 24.1 8.5 28 333-360 4-31 (69)
272 TIGR01010 BexC_CtrB_KpsE polys 37.3 5.4E+02 0.012 27.5 13.6 82 306-387 174-260 (362)
273 PF09744 Jnk-SapK_ap_N: JNK_SA 37.2 3.1E+02 0.0067 27.1 9.8 102 306-411 26-131 (158)
274 PF10212 TTKRSYEDQ: Predicted 36.9 3.3E+02 0.0071 31.8 11.3 92 297-391 404-509 (518)
275 PRK09841 cryptic autophosphory 36.5 8E+02 0.017 29.2 15.0 37 370-406 261-297 (726)
276 PF09728 Taxilin: Myosin-like 35.9 5.9E+02 0.013 27.5 30.6 62 461-523 245-306 (309)
277 PF05278 PEARLI-4: Arabidopsis 35.9 5.9E+02 0.013 27.5 12.2 51 370-420 215-265 (269)
278 PF15254 CCDC14: Coiled-coil d 35.5 9.5E+02 0.021 29.8 17.6 127 276-417 339-475 (861)
279 PF08826 DMPK_coil: DMPK coile 35.3 2.6E+02 0.0056 23.9 7.7 39 379-417 14-52 (61)
280 PRK11519 tyrosine kinase; Prov 35.2 6.4E+02 0.014 29.9 13.7 38 267-304 260-297 (719)
281 PRK15396 murein lipoprotein; P 35.2 1.4E+02 0.003 26.5 6.4 43 354-396 31-73 (78)
282 COG2433 Uncharacterized conser 35.1 3.2E+02 0.007 32.6 10.9 33 543-575 476-508 (652)
283 PF10146 zf-C4H2: Zinc finger- 33.8 5.7E+02 0.012 26.7 13.5 45 368-412 59-103 (230)
284 COG1566 EmrA Multidrug resista 33.3 7.1E+02 0.015 27.6 13.2 76 353-438 89-164 (352)
285 PF09730 BicD: Microtubule-ass 32.8 9.9E+02 0.021 29.2 36.9 305 234-574 22-445 (717)
286 PF05377 FlaC_arch: Flagella a 32.6 1E+02 0.0023 25.9 4.9 38 377-414 1-38 (55)
287 COG0497 RecN ATPase involved i 32.4 9.1E+02 0.02 28.6 24.9 39 260-298 157-195 (557)
288 PRK03598 putative efflux pump 32.4 6.1E+02 0.013 26.6 12.5 37 548-584 178-214 (331)
289 PRK10698 phage shock protein P 32.3 5.7E+02 0.012 26.2 15.6 57 518-574 87-146 (222)
290 TIGR02231 conserved hypothetic 32.2 4.3E+02 0.0092 29.9 11.2 86 333-418 70-173 (525)
291 PF03310 Cauli_DNA-bind: Cauli 32.0 70 0.0015 30.6 4.3 81 107-189 6-101 (121)
292 KOG4809 Rab6 GTPase-interactin 31.9 9.6E+02 0.021 28.7 26.5 49 387-438 428-476 (654)
293 PF10267 Tmemb_cc2: Predicted 31.7 7.8E+02 0.017 27.9 12.9 52 426-480 259-318 (395)
294 PF12072 DUF3552: Domain of un 31.6 5.4E+02 0.012 25.8 12.0 32 333-364 70-101 (201)
295 PF10779 XhlA: Haemolysin XhlA 31.6 2.3E+02 0.005 24.0 7.0 46 338-383 3-48 (71)
296 COG1382 GimC Prefoldin, chaper 31.6 3.9E+02 0.0084 25.6 9.1 19 285-303 10-28 (119)
297 PF10234 Cluap1: Clusterin-ass 31.4 1.8E+02 0.0039 31.1 7.7 48 350-397 171-218 (267)
298 KOG4603 TBP-1 interacting prot 30.9 4.4E+02 0.0094 27.2 9.7 121 272-394 5-141 (201)
299 PF07106 TBPIP: Tat binding pr 30.3 2.4E+02 0.0051 27.2 7.7 56 334-389 79-136 (169)
300 PF05529 Bap31: B-cell recepto 30.2 3.7E+02 0.008 26.4 9.2 62 339-400 123-185 (192)
301 PF00170 bZIP_1: bZIP transcri 30.0 79 0.0017 25.9 3.8 31 488-518 33-63 (64)
302 PRK00409 recombination and DNA 29.9 5.3E+02 0.011 31.3 12.0 70 371-446 515-584 (782)
303 COG4026 Uncharacterized protei 29.0 7.5E+02 0.016 26.6 13.5 134 461-622 129-271 (290)
304 PF04977 DivIC: Septum formati 28.8 96 0.0021 25.5 4.2 39 543-581 19-57 (80)
305 PF09738 DUF2051: Double stran 28.6 7.5E+02 0.016 26.9 11.8 68 550-622 142-215 (302)
306 PF02050 FliJ: Flagellar FliJ 27.6 3.8E+02 0.0083 22.7 9.2 69 334-402 12-85 (123)
307 PF08537 NBP1: Fungal Nap bind 27.1 3.6E+02 0.0078 29.8 9.1 44 333-376 174-217 (323)
308 PRK11020 hypothetical protein; 26.9 2.2E+02 0.0047 27.3 6.5 51 500-563 3-53 (118)
309 PF15188 CCDC-167: Coiled-coil 26.7 1.7E+02 0.0037 26.5 5.6 60 223-282 2-65 (85)
310 PRK10476 multidrug resistance 26.5 7.9E+02 0.017 26.0 13.5 17 342-358 87-103 (346)
311 KOG0239 Kinesin (KAR3 subfamil 26.2 1.2E+03 0.026 28.1 15.7 43 573-627 401-443 (670)
312 PF01920 Prefoldin_2: Prefoldi 26.2 4.3E+02 0.0092 22.8 8.6 20 338-357 66-85 (106)
313 PRK09973 putative outer membra 26.1 2.3E+02 0.0049 25.8 6.2 26 369-394 45-70 (85)
314 PF06810 Phage_GP20: Phage min 25.9 2.7E+02 0.0058 27.2 7.3 46 306-352 24-69 (155)
315 PF07439 DUF1515: Protein of u 25.9 2.9E+02 0.0063 26.3 7.1 50 336-385 10-63 (112)
316 PF10498 IFT57: Intra-flagella 25.5 7E+02 0.015 27.7 11.1 44 373-416 263-306 (359)
317 TIGR01069 mutS2 MutS2 family p 25.5 6.3E+02 0.014 30.7 11.6 48 372-419 511-558 (771)
318 KOG4324 Guanine nucleotide exc 25.5 4.2E+02 0.0091 30.6 9.4 163 384-562 59-236 (476)
319 PF13747 DUF4164: Domain of un 25.3 5E+02 0.011 23.3 10.2 75 499-574 5-79 (89)
320 PF15254 CCDC14: Coiled-coil d 25.0 1.1E+03 0.023 29.4 13.0 130 368-528 393-527 (861)
321 PF05384 DegS: Sensor protein 24.9 6.9E+02 0.015 24.8 13.4 84 464-561 31-118 (159)
322 PRK13729 conjugal transfer pil 24.8 2.3E+02 0.005 32.7 7.5 48 338-385 73-120 (475)
323 PF09177 Syntaxin-6_N: Syntaxi 24.7 4.9E+02 0.011 23.0 8.5 88 379-478 8-95 (97)
324 KOG3647 Predicted coiled-coil 24.5 4.4E+02 0.0096 28.8 9.0 59 275-333 106-164 (338)
325 PF06428 Sec2p: GDP/GTP exchan 24.3 1.6E+02 0.0035 27.1 5.1 71 365-442 11-82 (100)
326 PF13094 CENP-Q: CENP-Q, a CEN 24.3 2.6E+02 0.0057 26.7 6.8 50 370-419 35-84 (160)
327 PF13514 AAA_27: AAA domain 24.2 1.5E+03 0.032 28.4 42.4 63 104-180 527-589 (1111)
328 PF06785 UPF0242: Uncharacteri 24.1 1.1E+03 0.023 26.7 12.6 45 370-414 128-172 (401)
329 PF11471 Sugarporin_N: Maltopo 23.8 97 0.0021 26.1 3.3 30 367-396 30-59 (60)
330 PF10186 Atg14: UV radiation r 23.8 7.6E+02 0.017 24.9 15.9 46 369-414 63-108 (302)
331 PF07544 Med9: RNA polymerase 23.7 5E+02 0.011 22.8 8.1 76 133-233 2-77 (83)
332 PF06818 Fez1: Fez1; InterPro 23.7 5.6E+02 0.012 26.6 9.3 76 307-386 15-90 (202)
333 PF07111 HCR: Alpha helical co 23.4 1.4E+03 0.031 28.0 32.9 301 234-572 72-404 (739)
334 COG4372 Uncharacterized protei 23.3 1.2E+03 0.026 27.0 24.4 145 276-420 46-195 (499)
335 PF00846 Hanta_nucleocap: Hant 23.1 3.7E+02 0.008 30.6 8.4 54 334-387 2-67 (428)
336 PRK11578 macrolide transporter 23.1 3.3E+02 0.0073 29.0 8.0 23 429-451 103-125 (370)
337 PF03980 Nnf1: Nnf1 ; InterPr 23.1 4.3E+02 0.0093 23.7 7.6 71 506-576 31-108 (109)
338 PRK00295 hypothetical protein; 22.7 4.4E+02 0.0096 22.5 7.1 29 540-568 25-53 (68)
339 PF14073 Cep57_CLD: Centrosome 22.6 8.4E+02 0.018 24.9 16.3 13 431-443 56-68 (178)
340 PF05529 Bap31: B-cell recepto 22.4 5.5E+02 0.012 25.2 8.8 10 461-470 116-125 (192)
341 PF02181 FH2: Formin Homology 21.9 9.6E+02 0.021 25.6 11.1 194 107-354 139-343 (370)
342 KOG3958 Putative dynamitin [Cy 21.6 1.1E+03 0.023 26.4 11.2 113 425-559 191-315 (371)
343 PF04100 Vps53_N: Vps53-like, 21.5 1.1E+03 0.025 26.0 17.6 63 333-395 24-90 (383)
344 PRK03947 prefoldin subunit alp 21.5 6.6E+02 0.014 23.3 10.6 44 531-574 91-134 (140)
345 KOG1962 B-cell receptor-associ 21.4 8.4E+02 0.018 25.6 10.1 29 493-521 149-177 (216)
346 PF14584 DUF4446: Protein of u 21.2 1E+02 0.0022 30.1 3.4 92 536-627 41-138 (151)
347 PF10046 BLOC1_2: Biogenesis o 21.0 6.1E+02 0.013 22.8 9.2 28 536-563 68-95 (99)
348 KOG4403 Cell surface glycoprot 20.8 1.2E+03 0.025 27.4 11.7 31 430-460 352-382 (575)
349 PF15188 CCDC-167: Coiled-coil 20.8 54 0.0012 29.6 1.3 63 118-186 2-67 (85)
350 PF06156 DUF972: Protein of un 20.6 3.5E+02 0.0076 25.1 6.6 44 531-574 5-48 (107)
351 PF05739 SNARE: SNARE domain; 20.6 4.4E+02 0.0095 20.9 8.7 55 351-405 7-61 (63)
352 PF10458 Val_tRNA-synt_C: Valy 20.5 5E+02 0.011 21.6 7.3 27 333-359 3-29 (66)
353 PF10498 IFT57: Intra-flagella 20.5 1.2E+03 0.026 25.9 11.8 20 62-83 47-66 (359)
354 PF12795 MscS_porin: Mechanose 20.5 9.1E+02 0.02 24.6 19.6 57 499-559 154-210 (240)
No 1
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=100.00 E-value=7.7e-34 Score=275.45 Aligned_cols=188 Identities=18% Similarity=0.260 Sum_probs=184.6
Q ss_pred hHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhHh
Q 006822 367 SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKV 446 (630)
Q Consensus 367 sE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~a 446 (630)
++++|++++|+|++|++++++|++|+.+|.+|+.+++++|+|.+|++|+|++|+..+++||+.+|.||++++ +
T Consensus 2 ae~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk-------~ 74 (205)
T KOG1003|consen 2 AEADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAK-------H 74 (205)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-------H
Confidence 467899999999999999999999999999999999999999999999999999999999999999999998 9
Q ss_pred hhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHH
Q 006822 447 SSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKA 526 (630)
Q Consensus 447 saEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~ke 526 (630)
+++++++ ||++|+|+++||| ++|++++.|||.+|++|. +|.++++++++++++|+++.++++++.+
T Consensus 75 iaE~adr----K~eEVarkL~iiE---~dLE~~eeraE~~Es~~~-------eLeEe~~~~~~nlk~l~~~ee~~~q~~d 140 (205)
T KOG1003|consen 75 IAEKADR----KYEEVARKLVIIE---GELERAEERAEAAESQSE-------ELEEDLRILDSNLKSLSAKEEKLEQKEE 140 (205)
T ss_pred HHHHHHH----HHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHH-------HHHHHHHHhHhHHHHHHHHHHHHhhhHH
Confidence 9999999 9999999999999 999999999999999999 9999999999999999999999999999
Q ss_pred hh----------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC
Q 006822 527 AS----------AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (630)
Q Consensus 527 ~t----------lKeae~Rak~aE~lV~KL~~ErdrLedQl~s~keenK~L~ekld~tk 575 (630)
.| +|++++|++|++|.|++|+++||+|++.+...+.+|+.+...||+|=
T Consensus 141 ~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~~~ 199 (205)
T KOG1003|consen 141 KYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDETL 199 (205)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 99 99999999999999999999999999999999999999999999873
No 2
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=99.96 E-value=1.6e-28 Score=242.66 Aligned_cols=214 Identities=22% Similarity=0.334 Sum_probs=202.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhh-------hHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHh
Q 006822 341 EKVKSLEEQLKESEIRLQNANACFQT-------SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEI 413 (630)
Q Consensus 341 kKvksLE~qLdes~eQL~~A~aklEe-------sE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerel 413 (630)
+|+..++.+++.+..++..+..++.. +++++++|+|+|++|++++.++++|+..+..||..+++.++++.|.+
T Consensus 1 kK~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~ 80 (237)
T PF00261_consen 1 KKIQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERAR 80 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57778888887777777766666654 48899999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCchhhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhh
Q 006822 414 NFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVL 493 (630)
Q Consensus 414 k~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~L 493 (630)
++|++|...+++|++.||.||++++ .+++.++. +|+++.+++.+++ ++|.++++|++.+|++|.
T Consensus 81 k~lE~r~~~~eeri~~lE~~l~ea~-------~~~ee~e~----k~~E~~rkl~~~E---~~Le~aEeR~e~~E~ki~-- 144 (237)
T PF00261_consen 81 KVLENREQSDEERIEELEQQLKEAK-------RRAEEAER----KYEEVERKLKVLE---QELERAEERAEAAESKIK-- 144 (237)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHH-------HHHHHHHH----HHHHCHHHHHHHH---HHHHHHHHHHHHHHHHHH--
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH----HHHHHHHHHHHHH---HHHHHHHHHHhhhchhHH--
Confidence 9999999999999999999999988 99999999 9999999999999 999999999999999999
Q ss_pred ccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhh----------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006822 494 SEDNFELKNKQSFMRDKIKILESSLNRANIEKAAS----------AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSE 563 (630)
Q Consensus 494 se~N~ELeEEL~~l~~~lksLE~sl~kA~q~ke~t----------lKeae~Rak~aE~lV~KL~~ErdrLedQl~s~kee 563 (630)
+|+++|..++++|++||++..+|+++++.| +|+++.|+.++++.|.+|+.++|+|++.|...+.+
T Consensus 145 -----eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~ 219 (237)
T PF00261_consen 145 -----ELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEK 219 (237)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred hhHHHHHHhhcC
Q 006822 564 NKLLVEKLQYSG 575 (630)
Q Consensus 564 nK~L~ekld~tk 575 (630)
|+.+..+||+|=
T Consensus 220 ~~~~~~eld~~l 231 (237)
T PF00261_consen 220 YKKVQEELDQTL 231 (237)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999873
No 3
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=99.19 E-value=3.3e-10 Score=106.34 Aligned_cols=107 Identities=22% Similarity=0.348 Sum_probs=99.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHH---HHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHH
Q 006822 332 KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQE---QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLE 408 (630)
Q Consensus 332 ~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~---EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdE 408 (630)
.+.|+.+|++|+..||.+|+.++.+|..++..++.... .+-+|+|+|+.|++++.+|+.++..|..|+..+...+++
T Consensus 33 ~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~ 112 (143)
T PF12718_consen 33 KEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEH 112 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 47899999999999999999999999999999998854 344899999999999999999999999999999999999
Q ss_pred HHHHhhhhhcCCCCchhhhhhHHHHHHHHH
Q 006822 409 LSEEINFLKGNNDSNTKKVGILENQLRDLE 438 (630)
Q Consensus 409 Lerelk~Lesrs~~deEK~~~LE~QLKEa~ 438 (630)
++|.++.|+.+....+.|++.++.++++++
T Consensus 113 ~eRkv~~le~~~~~~E~k~eel~~k~~~~k 142 (143)
T PF12718_consen 113 FERKVKALEQERDQWEEKYEELEEKYKEAK 142 (143)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhc
Confidence 999999999999888999999999988764
No 4
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=99.18 E-value=8.2e-10 Score=110.05 Aligned_cols=216 Identities=21% Similarity=0.314 Sum_probs=148.9
Q ss_pred hhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhH
Q 006822 289 RFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQ 368 (630)
Q Consensus 289 kLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE 368 (630)
|++.++.+|-.+..|...+..+|+.....+. . -+.++.+|+.|++.+|.+|+.++..|..+..+++..+
T Consensus 2 K~~~l~~eld~~~~~~~~~~~~l~~~~~~~~----------~-aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e 70 (237)
T PF00261_consen 2 KIQQLKDELDEAEERLEEAEEKLKEAEKRAE----------K-AEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAE 70 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------H-HHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------H-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 5667777777777777777777766553333 2 2689999999999999999999999888888887753
Q ss_pred H--------------HHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHH
Q 006822 369 E--------------QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQL 434 (630)
Q Consensus 369 ~--------------EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QL 434 (630)
. .......+|..|+..+..|..++..|..|+.. ..+.+.++++.=...++|++.+|.++
T Consensus 71 ~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E-------~~rkl~~~E~~Le~aEeR~e~~E~ki 143 (237)
T PF00261_consen 71 KRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEE-------VERKLKVLEQELERAEERAEAAESKI 143 (237)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH-------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhchhH
Confidence 3 22334444444555555555555555555544 44445554443222356778888888
Q ss_pred HHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHH
Q 006822 435 RDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKIL 514 (630)
Q Consensus 435 KEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksL 514 (630)
++.+.+|.........-.....-.+....+.+.-|.+|..++..|+.|++.+|.+|..|-..+-.|+.+|.....+.+++
T Consensus 144 ~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~ 223 (237)
T PF00261_consen 144 KELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKV 223 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777776665444332222222233456677788889999999999999999999988888888888888888888888
Q ss_pred HHHHHHHh
Q 006822 515 ESSLNRAN 522 (630)
Q Consensus 515 E~sl~kA~ 522 (630)
..-++.+.
T Consensus 224 ~~eld~~l 231 (237)
T PF00261_consen 224 QEELDQTL 231 (237)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87776654
No 5
>PRK02224 chromosome segregation protein; Provisional
Probab=99.02 E-value=4.2e-05 Score=87.98 Aligned_cols=44 Identities=18% Similarity=0.207 Sum_probs=29.4
Q ss_pred hhhHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhc
Q 006822 229 DLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEA 272 (630)
Q Consensus 229 dLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EA 272 (630)
.++.++...+...+.+..++...+.....++.....+....-.+
T Consensus 262 ~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~~l~~~ 305 (880)
T PRK02224 262 DLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLD 305 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 36666666666667777777777777777776666655544333
No 6
>PRK02224 chromosome segregation protein; Provisional
Probab=98.99 E-value=1.5e-05 Score=91.65 Aligned_cols=186 Identities=21% Similarity=0.255 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhh
Q 006822 335 EVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEIN 414 (630)
Q Consensus 335 Ev~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk 414 (630)
++..++.++..++..++....++..+....+....++.++...++..+.....+++.+..+..++..+.....+++.+++
T Consensus 510 ~l~~l~~~~~~l~~~~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 589 (880)
T PRK02224 510 RIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIE 589 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555555555555555666666666666666666666666666
Q ss_pred hhhcCCCCchhhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhH-----HHHHHHHhhhhhhhhhhhhhhhhh
Q 006822 415 FLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDM-----ETLIEDLKSKVSKAESKTESVEEQ 489 (630)
Q Consensus 415 ~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dm-----e~vIEdLk~Kl~rAE~RaE~aEsK 489 (630)
.|+.. ..-...+..++..+.+.+..+...+..-+....+-..+-..+..+ ..-++.+..++.+++..++.++.+
T Consensus 590 ~le~~-~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l~~~~~~~~~e~l~~~~~~~~~~~~~l~~~ 668 (880)
T PRK02224 590 SLERI-RTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEK 668 (880)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66521 101222223333333222222222222111111111222233333 234555667777777777777777
Q ss_pred hhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhh
Q 006822 490 CIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAAS 528 (630)
Q Consensus 490 c~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~ke~t 528 (630)
+. ++..++..+..++..++..+.........+
T Consensus 669 l~-------~~~~~~~~l~~~i~~~~~~~e~~~~~~~~~ 700 (880)
T PRK02224 669 LD-------ELREERDDLQAEIGAVENELEELEELRERR 700 (880)
T ss_pred HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77 777777777777777777776664444443
No 7
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.75 E-value=0.00012 Score=85.02 Aligned_cols=54 Identities=17% Similarity=0.245 Sum_probs=27.8
Q ss_pred chHHHHHHHHHH---HHhhhhhhhhhHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHH
Q 006822 209 NADQQRHILRML---EKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAA 262 (630)
Q Consensus 209 t~eqqR~iLrML---ekSla~EldLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~ 262 (630)
.+..+|.+|..+ .....+-.+...+|.....+..+|+..+.........++...
T Consensus 151 ~~~~r~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~l~el~~~~~~L~~q~~~l~~~~ 207 (1164)
T TIGR02169 151 SPVERRKIIDEIAGVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRRER 207 (1164)
T ss_pred CHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788877654 222223333444555555555555555555555444444433
No 8
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.70 E-value=4e-05 Score=88.40 Aligned_cols=54 Identities=15% Similarity=0.118 Sum_probs=27.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 006822 501 KNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVY 558 (630)
Q Consensus 501 eEEL~~l~~~lksLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQl~ 558 (630)
..++.-++.+++.|...++.+...+ ..+..|.+|...-...|...++.|+..|.
T Consensus 964 ~~~~~~l~~~i~~lg~aiee~~~~~----~~a~er~~~l~~q~~dL~~~~~~L~~~i~ 1017 (1179)
T TIGR02168 964 EDDEEEARRRLKRLENKIKELGPVN----LAAIEEYEELKERYDFLTAQKEDLTEAKE 1017 (1179)
T ss_pred ccCHHHHHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777777766555554433 11223444444444444444444444433
No 9
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.70 E-value=3.4e-05 Score=92.38 Aligned_cols=117 Identities=19% Similarity=0.189 Sum_probs=67.5
Q ss_pred HhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHH---------HHHhhHHHHHHH---HHHHhHHHHhhHHHHHHhHHHH
Q 006822 472 LKSKVSKAESKTESVEEQCIVLSEDNFELKNKQS---------FMRDKIKILESS---LNRANIEKAASAKEVNHRTKLM 539 (630)
Q Consensus 472 Lk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~---------~l~~~lksLE~s---l~kA~q~ke~tlKeae~Rak~a 539 (630)
++.+..+++.++..++.+|..+......+.+++. .+..+++.++.. +...|-+-..-.++...|.++.
T Consensus 903 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~le~~i~~lg~VN~~Aiee~e~~~~r~~~l 982 (1163)
T COG1196 903 LKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEEL 982 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHH
Confidence 3344445555555555555422222222222221 344555555555 2222322333377788888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHhhcCCCCcceeccCCCC
Q 006822 540 MEMVMQLATQRELIQKQVYSLTSENKLL-VEKLQYSGKSSSATMYNAGDT 588 (630)
Q Consensus 540 E~lV~KL~~ErdrLedQl~s~keenK~L-~ekld~tkk~~~~~~~~~~~~ 588 (630)
..-...|...+++|++.|.....+.+.. .+.++...++-+.....-|.|
T Consensus 983 ~~~~~dl~~a~~~l~~~i~~~d~~~~~~f~~~f~~In~~F~~if~~L~~G 1032 (1163)
T COG1196 983 KSQREDLEEAKEKLLEVIEELDKEKRERFKETFDKINENFSEIFKELFGG 1032 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999877766543 666666666655544444443
No 10
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.63 E-value=0.0012 Score=80.35 Aligned_cols=69 Identities=20% Similarity=0.250 Sum_probs=36.6
Q ss_pred hhHHhHHHHHHHHHhhhhcccceeccccchhhHHHHHHHhHhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhhcc
Q 006822 107 SELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFI 182 (630)
Q Consensus 107 sEv~ele~~~~~lq~~I~~~~~~~~s~~~~~~~f~~~~~~~~kL~~~~~sLkq~qe~~~ei~~qsa~f~r~~~~~~ 182 (630)
.++.+++.-+.++..++......+.+|.- .++ - ..-..++..-|.+.++.+...+...+.|.-+..+|.
T Consensus 598 ~el~~~e~~l~~~~~~l~~~~~eL~~~~~--~i~--~---~~~~~~~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~ 666 (1311)
T TIGR00606 598 KELASLEQNKNHINNELESKEEQLSSYED--KLF--D---VCGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYS 666 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHh--c---CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444432 000 0 113455667777777777777777666666655544
No 11
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.62 E-value=0.00026 Score=81.85 Aligned_cols=56 Identities=20% Similarity=0.073 Sum_probs=31.6
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhHHHHhh---HHHHHHhHHHHHHHHHHHHHHHHHHH
Q 006822 499 ELKNKQSFMRDKIKILESSLNRANIEKAAS---AKEVNHRTKLMMEMVMQLATQRELIQ 554 (630)
Q Consensus 499 ELeEEL~~l~~~lksLE~sl~kA~q~ke~t---lKeae~Rak~aE~lV~KL~~ErdrLe 554 (630)
+|...|.-++..+..++.....|.++-+.+ ..|+....+-.+..+.++..+..++-
T Consensus 969 ~l~~~i~~lg~aiee~~~~~~~a~er~~~l~~q~~dL~~~~~~L~~~i~~i~~~~~~~f 1027 (1179)
T TIGR02168 969 EARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEID 1027 (1179)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888886666654332333333332 45555555555555555555555554
No 12
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.62 E-value=0.00047 Score=80.33 Aligned_cols=16 Identities=13% Similarity=0.378 Sum_probs=7.5
Q ss_pred hHHHHHHHHHhhHHHH
Q 006822 499 ELKNKQSFMRDKIKIL 514 (630)
Q Consensus 499 ELeEEL~~l~~~lksL 514 (630)
++..++..+..+++.+
T Consensus 955 ~l~~~l~~l~~~i~~l 970 (1164)
T TIGR02169 955 DVQAELQRVEEEIRAL 970 (1164)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 4444455454444443
No 13
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.36 E-value=0.019 Score=70.26 Aligned_cols=55 Identities=9% Similarity=-0.014 Sum_probs=34.9
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcc
Q 006822 244 LKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLN 298 (630)
Q Consensus 244 Lk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~ 298 (630)
+...+.....+...+++....+...+-++++-...+++..+.+...|+...-.+.
T Consensus 575 l~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~ 629 (1311)
T TIGR00606 575 LEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLF 629 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445555556666666666666666666666677777777777776666666
No 14
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.33 E-value=0.017 Score=72.95 Aligned_cols=344 Identities=20% Similarity=0.213 Sum_probs=166.4
Q ss_pred HHHHhhhhhhhhhHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcc
Q 006822 219 MLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLN 298 (630)
Q Consensus 219 MLekSla~EldLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~ 298 (630)
++.|.-..--.++.++...+.-...+.........+++-+|+....+...+.+.+--+. -++.+..||....-+|.
T Consensus 951 ~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~----~l~k~~~kle~~l~~le 1026 (1930)
T KOG0161|consen 951 TLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAK----SLNKAKAKLEQQLDDLE 1026 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 33333333333444444444333334444444445555555555444444443332222 12344455555555555
Q ss_pred cchhchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh-------HHHH
Q 006822 299 GSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS-------QEQL 371 (630)
Q Consensus 299 as~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEes-------E~EV 371 (630)
+...||...+-.++...-.|+ ..+ +.. -+.+..+..+...|+++++.-...+.+.+.+++.- +..|
T Consensus 1027 ~~le~e~~~r~e~Ek~~rkle---~el-~~~---~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i 1099 (1930)
T KOG0161|consen 1027 VTLEREKRIRMELEKAKRKLE---GEL-KDL---QESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQI 1099 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHH-HHh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 555555555555443332222 111 111 12233355566666666666666666666666553 3355
Q ss_pred HhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCC------------------chhhhhhHHHH
Q 006822 372 NEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDS------------------NTKKVGILENQ 433 (630)
Q Consensus 372 aaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~------------------deEK~~~LE~Q 433 (630)
..|.++|.+|.++++.-....+-++-+...++..-.+++.++...-+...+ -++..-..|.+
T Consensus 1100 ~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~ 1179 (1930)
T KOG0161|consen 1100 KELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQ 1179 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 566666666666665555555555555555555555555544433221110 02223333334
Q ss_pred HHHHHHHHHHhHhhhHhHH---HHH---hhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHH
Q 006822 434 LRDLEIQLQQAKVSSEASQ---EQQ---SMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFM 507 (630)
Q Consensus 434 LKEa~~QLqhA~asaEas~---eqQ---~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l 507 (630)
+...+ -.|+..+++-.. .-| .++--.=+++..-+.+|...+.....+-..+|.+|..+...+.+|...+.-+
T Consensus 1180 ~~~lr--~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~ 1257 (1930)
T KOG0161|consen 1180 IEELR--KKHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQ 1257 (1930)
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 43333 122222222111 100 0011123344455556666666666666677777764444555555555554
Q ss_pred HhhHHHHHHHHHHHhHHH---HhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC
Q 006822 508 RDKIKILESSLNRANIEK---AASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (630)
Q Consensus 508 ~~~lksLE~sl~kA~q~k---e~tlKeae~Rak~aE~lV~KL~~ErdrLedQl~s~keenK~L~ekld~tk 575 (630)
..-+.+|=.+..+-..+- ...+.+.+.-..-+-+....+..+++.++.|+.....+.-.++..+.+..
T Consensus 1258 ~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~ 1328 (1930)
T KOG0161|consen 1258 ERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENALRQLE 1328 (1930)
T ss_pred HHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444433322222222221 22266666666677777777788888888888887777777777666553
No 15
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.33 E-value=0.003 Score=79.37 Aligned_cols=135 Identities=19% Similarity=0.231 Sum_probs=68.1
Q ss_pred hhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHH
Q 006822 428 GILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFM 507 (630)
Q Consensus 428 ~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l 507 (630)
.-|++||+-.+..+.+...-.++-...-..+--.|+.+..-|.||..+++.-+....-+|.+-. +|..||..+
T Consensus 1065 ~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~-------dL~~ele~l 1137 (1930)
T KOG0161|consen 1065 EELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRR-------DLSEELEEL 1137 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 3344444444444444443333333222222334444455555555555554444444555555 666666666
Q ss_pred HhhHHHH-HHHHHHHh--H-HHHhh-------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 006822 508 RDKIKIL-ESSLNRAN--I-EKAAS-------AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVE 569 (630)
Q Consensus 508 ~~~lksL-E~sl~kA~--q-~ke~t-------lKeae~Rak~aE~lV~KL~~ErdrLedQl~s~keenK~L~e 569 (630)
...|... .....+.. . ++.++ -++.......+.++-.+++..+..|..|+-.++.....+.-
T Consensus 1138 ~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~el~~qle~l~~~k~~lek 1210 (1930)
T KOG0161|consen 1138 KEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSLAELQEQLEQLQKDKAKLEK 1210 (1930)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555543 11111111 1 11111 33444556677778888888888888888887765555433
No 16
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.29 E-value=0.0041 Score=75.06 Aligned_cols=50 Identities=18% Similarity=0.153 Sum_probs=33.7
Q ss_pred hhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhh
Q 006822 479 AESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAAS 528 (630)
Q Consensus 479 AE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~ke~t 528 (630)
.+.+....+.++-.|-..|+.--+|...+..++..|....+.....+...
T Consensus 947 ~~~~i~~le~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l 996 (1163)
T COG1196 947 LEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKL 996 (1163)
T ss_pred HHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666677777888887777777777777777766665555544443
No 17
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.24 E-value=0.0022 Score=75.21 Aligned_cols=277 Identities=23% Similarity=0.282 Sum_probs=169.6
Q ss_pred cccchhchhHHHHHHHhHHHHHhh----------hhHHHHHhhc--CChhHHH-HHHHHHHHHHHHHHHHHHHHHHhHhh
Q 006822 297 LNGSLQRESELKSKLGDFIEQLKA----------KDMVLQKLES--TKNSEVL-TMKEKVKSLEEQLKESEIRLQNANAC 363 (630)
Q Consensus 297 L~as~~REsel~sKL~~~~eqL~~----------k~~~lekl~~--s~esEv~-sLqkKvksLE~qLdes~eQL~~A~ak 363 (630)
|.-+..-|-+|+..+.+..|.|+. |=.+|+++.- ..-.|+. -+..+...|+++|.........|.+-
T Consensus 219 l~saskte~eLr~QvrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ 298 (1243)
T KOG0971|consen 219 LPSASKTEEELRAQVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEA 298 (1243)
T ss_pred CCccccchHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555555553 1223332221 1223443 36678888889988888888777766
Q ss_pred hhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcC----CCCc----hhhhhhHH---H
Q 006822 364 FQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGN----NDSN----TKKVGILE---N 432 (630)
Q Consensus 364 lEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesr----s~~d----eEK~~~LE---~ 432 (630)
-+..-.++++..--|+.+--+-+=||+|+++-...++-+.+-++|++-.+..|+.- |+.. .--+..|| .
T Consensus 299 ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~ 378 (1243)
T KOG0971|consen 299 KERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNA 378 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHH
Confidence 66677799999999999999999999999999999999999999999998888742 2211 12222333 3
Q ss_pred HHHHHHHHHHH----hHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhh----------hhhhhhhhhhhccchh
Q 006822 433 QLRDLEIQLQQ----AKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESK----------TESVEEQCIVLSEDNF 498 (630)
Q Consensus 433 QLKEa~~QLqh----A~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~R----------aE~aEsKc~~Lse~N~ 498 (630)
.||++=..|.- ++..---.+..-.+|.+++.-+..+-|-|+.++.-||.- |=.||.=...||+.|+
T Consensus 379 rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknl 458 (1243)
T KOG0971|consen 379 RLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNL 458 (1243)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhcc
Confidence 35544333321 111111111112334444444444444444444433332 2367777889999999
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhHHHHhh-----------------HHHHHHhHHHHHHHHHHH-------HHHHHHHH
Q 006822 499 ELKNKQSFMRDKIKILESSLNRANIEKAAS-----------------AKEVNHRTKLMMEMVMQL-------ATQRELIQ 554 (630)
Q Consensus 499 ELeEEL~~l~~~lksLE~sl~kA~q~ke~t-----------------lKeae~Rak~aE~lV~KL-------~~ErdrLe 554 (630)
+|++-++-++.-+.+||+-.+--.|--+.- .|++..|...+..+|-.+ -.-+..|+
T Consensus 459 nlEekVklLeetv~dlEalee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lq 538 (1243)
T KOG0971|consen 459 NLEEKVKLLEETVGDLEALEEMNEQLQESNRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQ 538 (1243)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 999999999999999987554333222211 567777776666554433 33345567
Q ss_pred HHHHHHHHhhhHHHHHHhh
Q 006822 555 KQVYSLTSENKLLVEKLQY 573 (630)
Q Consensus 555 dQl~s~keenK~L~ekld~ 573 (630)
+||--+++.+-...++.++
T Consensus 539 dqlqe~~dq~~Sseees~q 557 (1243)
T KOG0971|consen 539 DQLQELTDQQESSEEESQQ 557 (1243)
T ss_pred HHHHHHHhhhhhhHHHhcC
Confidence 7777666666655555443
No 18
>PRK03918 chromosome segregation protein; Provisional
Probab=98.15 E-value=0.033 Score=64.42 Aligned_cols=36 Identities=11% Similarity=0.219 Sum_probs=19.4
Q ss_pred HHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhc
Q 006822 459 YSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLS 494 (630)
Q Consensus 459 ysei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Ls 494 (630)
|.++.....-+.+++.++.....|.+..+.++..|.
T Consensus 548 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 583 (880)
T PRK03918 548 LEKLEELKKKLAELEKKLDELEEELAELLKELEELG 583 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 334444444555555555566666666666666443
No 19
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.08 E-value=0.041 Score=69.03 Aligned_cols=294 Identities=19% Similarity=0.229 Sum_probs=175.2
Q ss_pred hhhhhhhHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhch
Q 006822 225 ARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRE 304 (630)
Q Consensus 225 a~EldLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~RE 304 (630)
++..-|++.+...+.-...++..| ..++......-+|+=-..|.++.+++.-..+-.|-+.+|..+.-..++=
T Consensus 654 ~~~~~l~e~~~~l~~ev~~ir~~l-------~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~ 726 (1822)
T KOG4674|consen 654 ENLKKLQEDFDSLQKEVTAIRSQL-------EKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTV 726 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443 3455566667778888889999999999999999999998888777777
Q ss_pred hHHHHHHHhHHHHHhhhhHHHHHhhcCC----------hhHHHHHHHHHHHHHHHHHHHHH-------------------
Q 006822 305 SELKSKLGDFIEQLKAKDMVLQKLESTK----------NSEVLTMKEKVKSLEEQLKESEI------------------- 355 (630)
Q Consensus 305 sel~sKL~~~~eqL~~k~~~lekl~~s~----------esEv~sLqkKvksLE~qLdes~e------------------- 355 (630)
..+.+-|-.|-+.++.-+..+..|.+.+ -.|+..|......|--.++..+.
T Consensus 727 ~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~ 806 (1822)
T KOG4674|consen 727 HTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESR 806 (1822)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888888777777666651 12333333333333322222222
Q ss_pred ------HHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhh
Q 006822 356 ------RLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGI 429 (630)
Q Consensus 356 ------QL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~ 429 (630)
-|+.++.++ ++++..+.+.+..+.-.+..|..+..+.......+-..+......+..|+. ++..
T Consensus 807 i~eL~~el~~lk~kl---q~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~-------k~~e 876 (1822)
T KOG4674|consen 807 IKELERELQKLKKKL---QEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEI-------KLSE 876 (1822)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH
Confidence 222222221 334444444455555566666666666666666666666666666666665 4777
Q ss_pred HHHHHHHHHHHHHH--hHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHH
Q 006822 430 LENQLRDLEIQLQQ--AKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFM 507 (630)
Q Consensus 430 LE~QLKEa~~QLqh--A~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l 507 (630)
|+++|+..+.|... ++++.++..- +-+++...+-=|++|+.+|-.|... +- .|
T Consensus 877 L~k~l~~~~~~~~~l~~~~~~~d~~~----~~~~Lr~~~eq~~~l~~~L~~a~s~-------i~--------------~y 931 (1822)
T KOG4674|consen 877 LEKRLKSAKTQLLNLDSKSSNEDATI----LEDTLRKELEEITDLKEELTDALSQ-------IR--------------EY 931 (1822)
T ss_pred HHHHHHHhHHHHhhccccchhhhhhh----hhHHHHHHHHHHHHHHHHHHHHHHH-------HH--------------HH
Confidence 77788777666543 3344555544 4566666666677677666644433 33 44
Q ss_pred HhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006822 508 RDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSL 560 (630)
Q Consensus 508 ~~~lksLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQl~s~ 560 (630)
..-..+++.++..-+.+=+.|.++++.|.+--..=++.|..++-.|+.++..+
T Consensus 932 qe~~~s~eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l 984 (1822)
T KOG4674|consen 932 QEEYSSLEQSLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENL 984 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666666666666655555555555554444444444443
No 20
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.03 E-value=0.015 Score=72.14 Aligned_cols=62 Identities=10% Similarity=0.096 Sum_probs=35.7
Q ss_pred cccccchHHHHHHHHHHHHhhhhhhhhhHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHH
Q 006822 204 KSKMKNADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVV 265 (630)
Q Consensus 204 ~~~mqt~eqqR~iLrMLekSla~EldLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~ 265 (630)
--=|.+++++|.++-=.=+-=.+--.-.++|......-.++...+...+.....|+..+...
T Consensus 272 ad~~r~~eERR~liEEAag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA 333 (1486)
T PRK04863 272 ADYMRHANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAA 333 (1486)
T ss_pred HHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33388999888776443221133344455555555566666666666666666666655554
No 21
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.02 E-value=0.011 Score=64.62 Aligned_cols=127 Identities=10% Similarity=0.169 Sum_probs=75.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHhHhhhHhH---HHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhH
Q 006822 424 TKKVGILENQLRDLEIQLQQAKVSSEAS---QEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFEL 500 (630)
Q Consensus 424 eEK~~~LE~QLKEa~~QLqhA~asaEas---~eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~EL 500 (630)
..++..|+.++.+.+.|+......-... .++.......+......|...++.+.....+...++.++.-|...+.++
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~ 377 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDN 377 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhch
Confidence 3455555555555555555444433322 2222223445555555666666777677777777777777777777799
Q ss_pred HHHHHHHHhhHHHHHHHHHHHhHHHHhh------HHHHHHhHHHHHHHHHHHHHHH
Q 006822 501 KNKQSFMRDKIKILESSLNRANIEKAAS------AKEVNHRTKLMMEMVMQLATQR 550 (630)
Q Consensus 501 eEEL~~l~~~lksLE~sl~kA~q~ke~t------lKeae~Rak~aE~lV~KL~~Er 550 (630)
+++|..+..+++.+.........++..+ +++.+.|..+....+..+....
T Consensus 378 ~~~l~~l~~~l~~~~~~~~~~~ke~~~~~~i~~~~~~~g~~~~i~~~~l~~~n~~~ 433 (562)
T PHA02562 378 AEELAKLQDELDKIVKTKSELVKEKYHRGIVTDLLKDSGIKASIIKKYIPYFNKQI 433 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 9999999888888877766666555544 4555555444444444443333
No 22
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.88 E-value=0.02 Score=66.96 Aligned_cols=305 Identities=17% Similarity=0.189 Sum_probs=160.9
Q ss_pred HHHHHHHHHHHhccchHHHHhhhhHHHHhhhh---------HHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhc
Q 006822 260 EAAEVVWGRFLEAENSAEVLMGISKEMLGRFQ---------IVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLES 330 (630)
Q Consensus 260 E~~~~~~er~~EAENa~EvL~g~skel~gkLq---------~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~ 330 (630)
+.+++.--|.+.|+|...=|+..--.+..++= +++.+=+-+-+-+.-++.-.--.+++|.+.++.+--|.-
T Consensus 34 es~edlk~r~L~aeniiqdlrserdalhe~lvdkaglneSviie~sk~vstqetriyRrdv~llEddlk~~~sQiriLQn 113 (1265)
T KOG0976|consen 34 ESHEDLKKRLLDAENIIQDLRSERDALHESLVDKAGLNESVIIEQSKKVSTQETRIYRRDVNLLEDDLKHHESQIRILQN 113 (1265)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhhhcchhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 45666777888888888877766555555442 111121222222222222222223333333333333322
Q ss_pred C---ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHH----HHHHHHHh
Q 006822 331 T---KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESA----EEKVTQLT 403 (630)
Q Consensus 331 s---~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tA----esKle~Ls 403 (630)
+ .++|...||.-+..++.++++.+..|.+.++.++.-+.++++-.+-|.-.=+++-..-..+..- .+|++++.
T Consensus 114 ~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~~lt~~~~q~~tkl~e~~ 193 (1265)
T KOG0976|consen 114 KCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNEELNEFNMEFQTKLAEAN 193 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHH
Confidence 2 4666777777777777777777777777777766666666666666655555544433333322 23344444
Q ss_pred hhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHH---HHHhHHHHHHHHhhhhhhhh
Q 006822 404 DTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYS---AIWDMETLIEDLKSKVSKAE 480 (630)
Q Consensus 404 eTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkys---ei~dme~vIEdLk~Kl~rAE 480 (630)
.-|..+++.++-++......++|. ++=.+ .||-..-+-.-..|.+--+. .++---.+|+++..++.
T Consensus 194 ~en~~le~k~~k~~e~~~~nD~~s-le~~~-------~q~~tq~vl~ev~QLss~~q~ltp~rk~~s~i~E~d~~lq--- 262 (1265)
T KOG0976|consen 194 REKKALEEKLEKFKEDLIEKDQKS-LELHK-------DQENTQKVLKEVMQLSSQKQTLTPLRKTCSMIEEQDMDLQ--- 262 (1265)
T ss_pred HHHHHHHHHHHHHHHHhhcchHHH-HHHHH-------HHHHHHHHHHHHHHHHHhHhhhhhHhhhhHHHHHHHHHHH---
Confidence 444444444554444433222221 11011 11111111111111111111 11111134443333332
Q ss_pred hhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006822 481 SKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSL 560 (630)
Q Consensus 481 ~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQl~s~ 560 (630)
.-+...|.|-.-|--.|.-|..||+...-.++.+..-|+...+---...-+++.-+++..--+++|..++-+|.-.|.-.
T Consensus 263 ~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEa 342 (1265)
T KOG0976|consen 263 ASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEA 342 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22344555555566667788888888888888888888877776666667777777777777777777777777777776
Q ss_pred HHhhhHHHHHHhhcC
Q 006822 561 TSENKLLVEKLQYSG 575 (630)
Q Consensus 561 keenK~L~ekld~tk 575 (630)
+.+-..+.+++....
T Consensus 343 rrk~egfddk~~eLE 357 (1265)
T KOG0976|consen 343 RRKAEGFDDKLNELE 357 (1265)
T ss_pred HHhhcchhHHHHHHH
Confidence 666666666666653
No 23
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.87 E-value=0.00089 Score=63.40 Aligned_cols=139 Identities=27% Similarity=0.289 Sum_probs=105.5
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhh
Q 006822 378 IESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSM 457 (630)
Q Consensus 378 IelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~m 457 (630)
++-|+-+.+.|..|+..+++++..+...+.+.+.++..|.. |+..||.+|..+..+|..++..++.+..
T Consensus 2 m~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~-------K~~~lE~eld~~~~~l~~~k~~lee~~~---- 70 (143)
T PF12718_consen 2 MQALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQK-------KNQQLEEELDKLEEQLKEAKEKLEESEK---- 70 (143)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhHHH----
Confidence 56788899999999999999999999999999999999987 4888999998888888888777777755
Q ss_pred hHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHH
Q 006822 458 LYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTK 537 (630)
Q Consensus 458 kysei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~ke~tlKeae~Rak 537 (630)
.... ++++..++. -|++||.-...+|+..... +.++..++.
T Consensus 71 ~~~~---------------------~E~l~rriq-------~LEeele~ae~~L~e~~ek-----------l~e~d~~ae 111 (143)
T PF12718_consen 71 RKSN---------------------AEQLNRRIQ-------LLEEELEEAEKKLKETTEK-----------LREADVKAE 111 (143)
T ss_pred HHHh---------------------HHHHHhhHH-------HHHHHHHHHHHHHHHHHHH-----------HHHHHHHhH
Confidence 1111 012222233 4555555555555433222 566778899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 006822 538 LMMEMVMQLATQRELIQKQVYSLTSENKL 566 (630)
Q Consensus 538 ~aE~lV~KL~~ErdrLedQl~s~keenK~ 566 (630)
-++|-|..|..+++.++..+-.+..+|+.
T Consensus 112 ~~eRkv~~le~~~~~~E~k~eel~~k~~~ 140 (143)
T PF12718_consen 112 HFERKVKALEQERDQWEEKYEELEEKYKE 140 (143)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988888888775
No 24
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.87 E-value=0.082 Score=59.26 Aligned_cols=330 Identities=18% Similarity=0.217 Sum_probs=159.2
Q ss_pred hhhhHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccc-----hHHHHhhhhHHHHhhhhHHhhhcccchh
Q 006822 228 LDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAEN-----SAEVLMGISKEMLGRFQIVQFNLNGSLQ 302 (630)
Q Consensus 228 ldLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAEN-----a~EvL~g~skel~gkLq~~qf~L~as~~ 302 (630)
.+.-+.|...+.+.++|+.||..+..+...-.+.++..--|+-+.+. ++...+-.+.....+....-..|...-.
T Consensus 58 ~~~l~ELe~akr~veel~~kLe~~~~~~~~a~~~~e~~k~r~~e~e~~~~~~~~~~~k~ele~~~~q~~~~~~eL~~~k~ 137 (522)
T PF05701_consen 58 AQALSELESAKRTVEELKLKLEKAQAEEKQAEEDSELAKFRAKELEQGIAEEASVAWKAELESAREQYASAVAELDSVKQ 137 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677789999999999998887777777776666556554432 1222222223333333333333332221
Q ss_pred chhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHH-------------
Q 006822 303 RESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQE------------- 369 (630)
Q Consensus 303 REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~------------- 369 (630)
-=.-++.-+.++. ..|+.++.+.... .+-...-.+++..|-.++...++-+.++......++.
T Consensus 138 EL~~lr~e~~~~~---~~k~~A~~~aeea-~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~ 213 (522)
T PF05701_consen 138 ELEKLRQELASAL---DAKNAALKQAEEA-VSAAEENEEKVEELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDA 213 (522)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111111 2345555554444 3334445567777777777777777666544333311
Q ss_pred -----HHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCC----chhhhhhHHHHHHHHHHH
Q 006822 370 -----QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDS----NTKKVGILENQLRDLEIQ 440 (630)
Q Consensus 370 -----EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~----deEK~~~LE~QLKEa~~Q 440 (630)
++..-+..++.|+.++ +.+...+.|+...+.-...|..+++.....-.. ...+...+...|.-....
T Consensus 214 ~~~~~~leeae~~l~~L~~e~----~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~E 289 (522)
T PF05701_consen 214 EEWEKELEEAEEELEELKEEL----EAAKDLESKLAEASAELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKE 289 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHH
Confidence 2222333333333333 233333444444444344444444433331000 011222233334444444
Q ss_pred HHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHH
Q 006822 441 LQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNR 520 (630)
Q Consensus 441 LqhA~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~k 520 (630)
|..++.........-+.+...+..+..=++..|..+.+...|...+...+. .|+.+|.-+++.+........+
T Consensus 290 Le~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~-------~L~~eL~~~r~eLea~~~~e~~ 362 (522)
T PF05701_consen 290 LEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVS-------SLEAELNKTRSELEAAKAEEEK 362 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh-------hHHHHHHHHHHHHHHHHhhhcc
Confidence 444444444433322223344444444444455555555566556666666 8888888888888777666555
Q ss_pred HhHHHHhh---HHH-------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh
Q 006822 521 ANIEKAAS---AKE-------VNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQ 572 (630)
Q Consensus 521 A~q~ke~t---lKe-------ae~Rak~aE~lV~KL~~ErdrLedQl~s~keenK~L~ekld 572 (630)
+...-... +.. +-.-+..+..=+.++..+++.....|.+...++.....+..
T Consensus 363 ~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~e 424 (522)
T PF05701_consen 363 AKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAE 424 (522)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43221111 222 33333344444445555555555555555555544444444
No 25
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.86 E-value=0.2 Score=63.28 Aligned_cols=297 Identities=21% Similarity=0.246 Sum_probs=142.5
Q ss_pred HHHHHHhh-----------hhhhhhhHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHH----------HHHHhccch
Q 006822 217 LRMLEKSL-----------ARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVW----------GRFLEAENS 275 (630)
Q Consensus 217 LrMLekSl-----------a~EldLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~----------er~~EAENa 275 (630)
|.||++.| +|--+|..-+..-.+....+...|++...-...++-.+..+- .|+.--
T Consensus 691 le~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e--- 767 (1822)
T KOG4674|consen 691 LENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQE--- 767 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 66777665 556668888888888888888888888877777776655432 222211
Q ss_pred HHHHhhhhHHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhcC---ChhHHHHHHHHHHHHHHHHHH
Q 006822 276 AEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLEST---KNSEVLTMKEKVKSLEEQLKE 352 (630)
Q Consensus 276 ~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s---~esEv~sLqkKvksLE~qLde 352 (630)
.+-|...-..++..+-.+|+..+-...-++..+.++++-+..|. ..|.++... ..+++.+++ ..+..++..
T Consensus 768 ~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~---~el~~lk~klq~~~~~~r~l~---~~~~~~l~~ 841 (1822)
T KOG4674|consen 768 LEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELE---RELQKLKKKLQEKSSDLRELT---NSLEKQLEN 841 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---hhhhhHHHH
Confidence 12222333344444445555555555666777777776666665 333333222 122222221 222223333
Q ss_pred HHHHHHHhHhh-------hhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHH--HHHHhhhhHHHHHHhhhhhcCCCCc
Q 006822 353 SEIRLQNANAC-------FQTSQEQLNEMDNFIESLKESLYGAESRAESAEEK--VTQLTDTNLELSEEINFLKGNNDSN 423 (630)
Q Consensus 353 s~eQL~~A~ak-------lEesE~EVaaLerrIelLKEel~rAEsRa~tAesK--le~LseTNdELerelk~Lesrs~~d 423 (630)
+.-++...... +...+..++.|+..+..|+..|.-...|..+--++ .+.++.-.+.|..+
T Consensus 842 ~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~----------- 910 (1822)
T KOG4674|consen 842 AQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSNEDATILEDTLRKE----------- 910 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccccchhhhhhhhhHHHHHH-----------
Confidence 32222221111 11113333444444444444444444444433333 22222222222211
Q ss_pred hhhhhhHHHHHHHHHHHHHHhH---hhhHhHHHHHhhhHHHHH-hHHHHHHHHhhhhhhhhhhhhhhhhhhhhhc-----
Q 006822 424 TKKVGILENQLRDLEIQLQQAK---VSSEASQEQQSMLYSAIW-DMETLIEDLKSKVSKAESKTESVEEQCIVLS----- 494 (630)
Q Consensus 424 eEK~~~LE~QLKEa~~QLqhA~---asaEas~eqQ~mkysei~-dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Ls----- 494 (630)
.+++..|..+|+-+..+..+=+ .+.+.+-.+-.-.|++.. ..++=|+.+..++--.|.|.-..+..|.-|.
T Consensus 911 ~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~ 990 (1822)
T KOG4674|consen 911 LEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREELEL 990 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2344444445554443333222 222333222222233222 2223344444444333333333333333332
Q ss_pred ------cchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHH
Q 006822 495 ------EDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVN 533 (630)
Q Consensus 495 ------e~N~ELeEEL~~l~~~lksLE~sl~kA~q~ke~tlKeae 533 (630)
..++.+..+++.+++.++++.....+|+.....+=.++.
T Consensus 991 ~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~ 1035 (1822)
T KOG4674|consen 991 STKGKEDKLLDLSREISSLQNELKSLLKAASQANEQIEDLQNDLK 1035 (1822)
T ss_pred cccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 336688889999999999999999998887777733333
No 26
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.82 E-value=0.03 Score=67.42 Aligned_cols=254 Identities=20% Similarity=0.169 Sum_probs=145.9
Q ss_pred HHHHHHHHHHHHHhcc-chHHHHhhhhHHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHH
Q 006822 258 MEEAAEVVWGRFLEAE-NSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEV 336 (630)
Q Consensus 258 lEE~~~~~~er~~EAE-Na~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv 336 (630)
+|+.|+.|-+.++-.+ -.++-|+|.-++-+.+|..+..=|+-... ++ +--++| .+++
T Consensus 1494 i~~vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~---di-----~ra~~L--------------~s~A 1551 (1758)
T KOG0994|consen 1494 IEEVAEEVLALELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKG---DI-----ARAENL--------------QSEA 1551 (1758)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhh---hH-----HHHHHH--------------HHHH
Confidence 4455555555444333 23455666666666666555443332110 00 000111 2556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhh
Q 006822 337 LTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFL 416 (630)
Q Consensus 337 ~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~L 416 (630)
..-.++...+..+.+...+.|+.|....-.++.-|....+-|++....|.+++++...|+.++.-++++..+|.+.+..|
T Consensus 1552 ~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~l 1631 (1758)
T KOG0994|consen 1552 ERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEEL 1631 (1758)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777788888888888888877777777788888888999999999999999999999999999999999988888
Q ss_pred hcCCCCchhhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccc
Q 006822 417 KGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSED 496 (630)
Q Consensus 417 esrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~ 496 (630)
+........-+..-++-.--++.+.+.|+.-.+.-+. .|+.+.+ ++++--.-..-|..|||.
T Consensus 1632 k~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~----~~~~~~~---l~~~r~~g~~~ar~rAe~----------- 1693 (1758)
T KOG0994|consen 1632 KHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQK----YYELVDR---LLEKRMEGSQAARERAEQ----------- 1693 (1758)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH---HHHHHhhcchhHHHHHHH-----------
Confidence 8765433333333333333333222222222221111 3333322 233111222233333332
Q ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006822 497 NFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENK 565 (630)
Q Consensus 497 N~ELeEEL~~l~~~lksLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQl~s~keenK 565 (630)
|+.+.+.| -...++|..-+|+++.-+.--++-+...+.++.+|+..+-++....+
T Consensus 1694 ----------L~~eA~~L----l~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~I~ 1748 (1758)
T KOG0994|consen 1694 ----------LRTEAEKL----LGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVESVLDHIN 1748 (1758)
T ss_pred ----------HHHHHHHH----HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 22232222 23334555566777766666666667777777777777776655443
No 27
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=97.80 E-value=0.0053 Score=61.59 Aligned_cols=184 Identities=19% Similarity=0.297 Sum_probs=96.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHH-------HHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhh
Q 006822 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQE-------QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDT 405 (630)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~-------EVaaLerrIelLKEel~rAEsRa~tAesKle~LseT 405 (630)
+.+|.+|..++..||.+++.+++.+..|..++++.+. .+-.|+++.+.+++.+...+..+..|-.--+.+-.-
T Consensus 3 e~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK 82 (205)
T KOG1003|consen 3 EADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRK 82 (205)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777777777777777777766522 333455555555555444444333332222222222
Q ss_pred hHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhH---hhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhh
Q 006822 406 NLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAK---VSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESK 482 (630)
Q Consensus 406 NdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~---asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~R 482 (630)
-++--+.|-++++.=-..++|++.=|.++++...++.+-. -+...+.++-+-..+.- ...|..|-.|+--|++|
T Consensus 83 ~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~---e~~ik~ltdKLkEaE~r 159 (205)
T KOG1003|consen 83 YEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKY---EEELKELTDKLKEAETR 159 (205)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHH---HHHHHHHHHHHhhhhhh
Confidence 2333344444444322245566666666665555444432 22233333111112222 23444444788899999
Q ss_pred hhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHH
Q 006822 483 TESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLN 519 (630)
Q Consensus 483 aE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~ 519 (630)
|+.+|-.+.-|-.+=-+|+..+.....+-.++..-|+
T Consensus 160 AE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD 196 (205)
T KOG1003|consen 160 AEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELD 196 (205)
T ss_pred HHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHH
Confidence 9999988884444444444444444444444433333
No 28
>PRK03918 chromosome segregation protein; Provisional
Probab=97.79 E-value=0.14 Score=59.37 Aligned_cols=8 Identities=0% Similarity=0.522 Sum_probs=3.4
Q ss_pred cCCccccc
Q 006822 74 GDDLETLV 81 (630)
Q Consensus 74 ~~~~E~~~ 81 (630)
-.+|..+.
T Consensus 134 Qg~~~~~~ 141 (880)
T PRK03918 134 QGEIDAIL 141 (880)
T ss_pred ccchHHHh
Confidence 34444443
No 29
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.71 E-value=0.21 Score=58.98 Aligned_cols=87 Identities=21% Similarity=0.287 Sum_probs=51.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHH
Q 006822 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEE 412 (630)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELere 412 (630)
+.+..-||--+-.|--.|++...++....+.++..+++.+.+...|.++++.++..+.++.....|++-|..+.-+=.+.
T Consensus 335 e~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~q 414 (775)
T PF10174_consen 335 EQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQ 414 (775)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555666666666666666666666677777777777766666666666666555444444
Q ss_pred hhhhhcC
Q 006822 413 INFLKGN 419 (630)
Q Consensus 413 lk~Lesr 419 (630)
+..++.|
T Consensus 415 l~~~k~R 421 (775)
T PF10174_consen 415 LDEEKER 421 (775)
T ss_pred HHHHHHH
Confidence 4444333
No 30
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.60 E-value=0.29 Score=57.78 Aligned_cols=198 Identities=21% Similarity=0.268 Sum_probs=122.4
Q ss_pred HHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHh-------hhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHH
Q 006822 324 VLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANA-------CFQTSQEQLNEMDNFIESLKESLYGAESRAESAE 396 (630)
Q Consensus 324 ~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~a-------klEesE~EVaaLerrIelLKEel~rAEsRa~tAe 396 (630)
+++++...+++-+.++-+=+..+|+++.-......-+.+ .++...+....|.+++.-++-+|.+..+-+....
T Consensus 228 alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~q 307 (775)
T PF10174_consen 228 ALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQ 307 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445655555555555556555555544433333 3344456777888999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHhhhhhcCCCCchhh-------hhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHH---HHhHH
Q 006822 397 EKVTQLTDTNLELSEEINFLKGNNDSNTKK-------VGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSA---IWDME 466 (630)
Q Consensus 397 sKle~LseTNdELerelk~Lesrs~~deEK-------~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyse---i~dme 466 (630)
++|.-+...+.+...-+.+|+..-..-+.+ ++.|-..|.+...|+..+.+..+...+.-+-.-.+ +.|+.
T Consensus 308 t~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~ 387 (775)
T PF10174_consen 308 TRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDML 387 (775)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999877777776642222222 34555566677777777766666665422222223 33333
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHH---------HHHHHHHHHhHHHHhhHHH
Q 006822 467 TLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIK---------ILESSLNRANIEKAASAKE 531 (630)
Q Consensus 467 ~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lk---------sLE~sl~kA~q~ke~tlKe 531 (630)
-+.+ .|+.+.-.+.|+++.... +=...|.....+|. .+-..+++|...++...+.
T Consensus 388 d~~e---~ki~~Lq~kie~Lee~l~-------ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~ 451 (775)
T PF10174_consen 388 DKKE---RKINVLQKKIENLEEQLR-------EKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQER 451 (775)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 3333 666666666666655544 55555555555555 5667778888877777333
No 31
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.58 E-value=0.24 Score=56.34 Aligned_cols=107 Identities=19% Similarity=0.243 Sum_probs=54.7
Q ss_pred HHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchh----hhhhHHHHHHHHHHHHHHhH
Q 006822 370 QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTK----KVGILENQLRDLEIQLQQAK 445 (630)
Q Consensus 370 EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deE----K~~~LE~QLKEa~~QLqhA~ 445 (630)
......-.+..|++++-.++++++.+..+...+.+-- +.+...++|.+++-. -+..|-.||.++..+|.+++
T Consensus 277 ~~~~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL----~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~lke~~ 352 (546)
T PF07888_consen 277 QAQQLQQENEALKEQLRSAQEQLQASQQEAELLRKEL----SDAVNVRDRTMAELHQARLEAAQLKLQLADASLELKEGR 352 (546)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3344555567788888888888888877776654432 222223333322211 13444555555555554444
Q ss_pred hhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhh
Q 006822 446 VSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKT 483 (630)
Q Consensus 446 asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~Ra 483 (630)
+ .-.++++... ..+.....-|++|+..+.+++...
T Consensus 353 ~--q~~qEk~~l~-~~~e~~k~~ie~L~~el~~~e~~l 387 (546)
T PF07888_consen 353 S--QWAQEKQALQ-HSAEADKDEIEKLSRELQMLEEHL 387 (546)
T ss_pred H--HHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHH
Confidence 1 1122222211 223333345677777777776544
No 32
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.51 E-value=0.24 Score=56.41 Aligned_cols=48 Identities=21% Similarity=0.271 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhh
Q 006822 430 LENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVS 477 (630)
Q Consensus 430 LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~ 477 (630)
+..++...+.||+.+.....++..+=..+-.+++++-++=+-.-+++-
T Consensus 281 ~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh 328 (546)
T PF07888_consen 281 LQQENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELH 328 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666666655444555566666555443333333
No 33
>PRK01156 chromosome segregation protein; Provisional
Probab=97.46 E-value=0.41 Score=56.19 Aligned_cols=26 Identities=8% Similarity=0.070 Sum_probs=13.5
Q ss_pred hHhhhhhhHhhHHHHHHHHHHHHHhh
Q 006822 146 MEKKLHDCEGSLKESQEHVSELKMQS 171 (630)
Q Consensus 146 ~~~kL~~~~~sLkq~qe~~~ei~~qs 171 (630)
++..|.+....++.....+..++.+.
T Consensus 195 ~e~eL~~~~~~i~el~~~~~~l~~~i 220 (895)
T PRK01156 195 SNLELENIKKQIADDEKSHSITLKEI 220 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555555554444
No 34
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.42 E-value=0.6 Score=57.04 Aligned_cols=361 Identities=19% Similarity=0.203 Sum_probs=205.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhh-----HHHHhhhhHHhhhcccchhchhHHHHHHH-hHHH---
Q 006822 246 LKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGIS-----KEMLGRFQIVQFNLNGSLQRESELKSKLG-DFIE--- 316 (630)
Q Consensus 246 ~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~s-----kel~gkLq~~qf~L~as~~REsel~sKL~-~~~e--- 316 (630)
-++.+++.|+..||-.-.. ...|+..+|-+=.+++.. -+...|+-..+..+.+..--.-++..|.. .+-+
T Consensus 288 ~~~k~~e~ek~~lE~~k~~-al~fL~kenel~~~~~~~~q~~~~~~~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~ 366 (1293)
T KOG0996|consen 288 NRVKLVEKEKKALEGPKNE-ALEFLKKENELFRKKNKLCQYILYESRAKIAEMQEELEKIEEGLKDENEKFDIESNEEVE 366 (1293)
T ss_pred HHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHH
Confidence 3455678888889876554 456888888655444432 22344444444444443332233333332 1111
Q ss_pred HHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHH
Q 006822 317 QLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAE 396 (630)
Q Consensus 317 qL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAe 396 (630)
..++.+..+......-...+.++++|.+.+|.+--.-.++|.++..+....+.++-...+.+.+++-..+++..-.+.-.
T Consensus 367 k~e~~~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~ 446 (1293)
T KOG0996|consen 367 KNEAVKKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQ 446 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHH
Confidence 11111121221111113366688888888888888888888888877777777777777777777777777776666666
Q ss_pred HHHHHHhhh----hHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHH
Q 006822 397 EKVTQLTDT----NLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDL 472 (630)
Q Consensus 397 sKle~LseT----NdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIEdL 472 (630)
++...|++- +-+|...+..|+.++....++...+|+.|.-...|+..|+.=...+.-+..++......-..=+++|
T Consensus 447 ~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~l 526 (1293)
T KOG0996|consen 447 TEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEEL 526 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666655544 4445555667777777777788888888888877888877766666655555555555555556667
Q ss_pred hhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHH
Q 006822 473 KSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQREL 552 (630)
Q Consensus 473 k~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~Erdr 552 (630)
|+++....++. . +..-+|.-+. ..+..-.++-..--|++..-.+....+.+++..-|+|
T Consensus 527 k~~L~~~~~~~-------~-------e~~~~l~~~k-------~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqr 585 (1293)
T KOG0996|consen 527 KGKLLASSESL-------K-------EKKTELDDLK-------EELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQR 585 (1293)
T ss_pred HHHHHHHHHHH-------H-------HHHHHHHHHH-------HhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 77777655441 1 3333333333 3333333333334455555566666677777777776
Q ss_pred HHH---HHHHHHHhhhHHH--HHHhhcCCCCccee--ccCCCCCCc-ceee----ccCCCcccccccchHHHHHHHHhhh
Q 006822 553 IQK---QVYSLTSENKLLV--EKLQYSGKSSSATM--YNAGDTDDK-ELLI----NPTNNLAGATVKTSEDAVSLMKSVQ 620 (630)
Q Consensus 553 Led---Ql~s~keenK~L~--ekld~tkk~~~~~~--~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (630)
++. .+++...+|+.|. -.++....=+.|+- ..-|.-|+| |.-| ..-|+..--+.-|...+|.+++.-.
T Consensus 586 veE~ks~~~~~~s~~kVl~al~r~kesG~i~Gf~GRLGDLg~Id~kYDvAIsTac~~LdyiVVdt~e~aq~cI~fl~~~n 665 (1293)
T KOG0996|consen 586 VEEAKSSLSSSRSRNKVLDALMRLKESGRIPGFYGRLGDLGAIDEKYDVAISTACARLDYIVVDTIETAQECINFLKKNN 665 (1293)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHcCCCCccccccccccccchHHHHHHHHhccccceEEeccHHHHHHHHHHHHHcC
Confidence 654 5667778888873 23444444444431 111222332 1111 1112223334566677888888877
Q ss_pred hcc-eehhh
Q 006822 621 AGL-TFQVL 628 (630)
Q Consensus 621 ~~~-~~~~~ 628 (630)
-|. ||+.|
T Consensus 666 LgraTFi~L 674 (1293)
T KOG0996|consen 666 LGRATFIIL 674 (1293)
T ss_pred CCceeEEeh
Confidence 664 55543
No 35
>PRK11637 AmiB activator; Provisional
Probab=97.39 E-value=0.22 Score=53.98 Aligned_cols=104 Identities=21% Similarity=0.323 Sum_probs=68.4
Q ss_pred hHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHH
Q 006822 305 SELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKES 384 (630)
Q Consensus 305 sel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEe 384 (630)
++++.+|++...++.... .++..+++++..++.+++..+.++..+..++...+.++..+++.|..++.+
T Consensus 43 ~~~~~~l~~l~~qi~~~~-----------~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~e 111 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAKE-----------KSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNAS 111 (428)
T ss_pred hhhHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666665555433 445556667777777777777777777777777777788888888888888
Q ss_pred HHhhhhhHHHHHHHHHHHhhhhHHHHH--HhhhhhcC
Q 006822 385 LYGAESRAESAEEKVTQLTDTNLELSE--EINFLKGN 419 (630)
Q Consensus 385 l~rAEsRa~tAesKle~LseTNdELer--elk~Lesr 419 (630)
+..++.++......+...-.+.-..-. -+.+|-+.
T Consensus 112 I~~~q~~l~~~~~~l~~rlra~Y~~g~~~~l~vLl~a 148 (428)
T PRK11637 112 IAKLEQQQAAQERLLAAQLDAAFRQGEHTGLQLILSG 148 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHhcC
Confidence 888887777777766665544443211 24455554
No 36
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.34 E-value=0.22 Score=60.58 Aligned_cols=96 Identities=16% Similarity=0.135 Sum_probs=51.0
Q ss_pred HHHHHhhhhhhhhhHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHH----------------------------H
Q 006822 218 RMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGR----------------------------F 269 (630)
Q Consensus 218 rMLekSla~EldLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er----------------------------~ 269 (630)
|.=+-+.+++-|.++ +.+-...-.+|..+|+..+ |=+..+-+++. .
T Consensus 1334 R~e~l~~k~k~~f~~-~~~n~~~L~el~~~l~sL~-----L~~lne~vCG~p~apC~s~CGG~gC~~~~~cGg~sC~Ga~ 1407 (1758)
T KOG0994|consen 1334 RVEELLVKQKGDFGG-LAENSRLLVELRAELSSLP-----LTPLNEQVCGAPGAPCDSLCGGAGCRQDGTCGGLSCRGAV 1407 (1758)
T ss_pred HHHHHHHHhhhcccc-cccccHHHHHHHHHhcCCC-----CchhhHHhcCCCCCCCCCCCCCCCCCCCCCccCccccchh
Confidence 444444555666666 5555556677777777766 44444444432 2
Q ss_pred HhccchHHHHhhhhHHHHhhhhHHhhhc---ccchhchhHHHHHHHhHHHHHh
Q 006822 270 LEAENSAEVLMGISKEMLGRFQIVQFNL---NGSLQRESELKSKLGDFIEQLK 319 (630)
Q Consensus 270 ~EAENa~EvL~g~skel~gkLq~~qf~L---~as~~REsel~sKL~~~~eqL~ 319 (630)
.-|++|..+-+..--.+.+++-..+--| ..+..+=++.+.|-+.+.+|-+
T Consensus 1408 t~A~~A~~~A~~~~~~l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~~~~a~ 1460 (1758)
T KOG0994|consen 1408 TRAGGALLMAGDADTQLRSKLAEAEQTLSMVREAKLSASEAQQSAQRALEQAN 1460 (1758)
T ss_pred cccchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3345555555554445555544433333 2334444566666666665554
No 37
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.25 E-value=0.57 Score=53.07 Aligned_cols=128 Identities=23% Similarity=0.290 Sum_probs=82.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHH
Q 006822 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEE 412 (630)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELere 412 (630)
++++..+++++......+... .+..|.+.++....+|.+|--.++--...-...+.........+..+.+.|.++..+
T Consensus 255 ~~~i~~l~~~i~~~~~~l~~l--~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~E 332 (569)
T PRK04778 255 EKEIQDLKEQIDENLALLEEL--DLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEE 332 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 456666666665555544433 345555555555666666666666666666667777777888888888899999999
Q ss_pred hhhhhcC---CCCchhhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHH
Q 006822 413 INFLKGN---NDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDME 466 (630)
Q Consensus 413 lk~Lesr---s~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme 466 (630)
+..|..+ +-.+.+++..++.+|++...++......+..... -|+.+.+..
T Consensus 333 i~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~----~ysel~e~l 385 (569)
T PRK04778 333 IDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEI----AYSELQEEL 385 (569)
T ss_pred HHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC----CHHHHHHHH
Confidence 8888776 2335677888888888887666654443333332 355554443
No 38
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.19 E-value=0.5 Score=56.47 Aligned_cols=299 Identities=22% Similarity=0.268 Sum_probs=154.8
Q ss_pred hhhHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhchhHHH
Q 006822 229 DLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELK 308 (630)
Q Consensus 229 dLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~ 308 (630)
||.-||.-.|..-.+=|.||--.+-.++.+|-.-+ ...|+.--|.+|.--.+|+.-=.
T Consensus 235 dLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqE----------------------fkSkim~qqa~Lqrel~raR~e~ 292 (1243)
T KOG0971|consen 235 DLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQE----------------------FKSKIMEQQADLQRELKRARKEA 292 (1243)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888888888888888888888888775433 22333333333332222222111
Q ss_pred HHHHhHHHHHhh---------------hhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhhHHHHH
Q 006822 309 SKLGDFIEQLKA---------------KDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACF-QTSQEQLN 372 (630)
Q Consensus 309 sKL~~~~eqL~~---------------k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~akl-EesE~EVa 372 (630)
.-+...-++... |+.+=++.++- --||.++++++..||-+|.-.....++-..-. -.+--+.-
T Consensus 293 keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesL-Q~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfk 371 (1243)
T KOG0971|consen 293 KEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESL-QQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFK 371 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHH
Confidence 111111111110 22222222221 23555555665555555554444333211110 00122556
Q ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhHhhhHhHH
Q 006822 373 EMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQ 452 (630)
Q Consensus 373 aLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~ 452 (630)
-++--+.-||+-+-|-.--...+...--.+.+-..-.+.++..|+...-.-..+++.+|.++...+.|+.-| ..||+.+
T Consensus 372 qlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAA-lGAE~MV 450 (1243)
T KOG0971|consen 372 QLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAA-LGAEEMV 450 (1243)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcHHHHH
Confidence 677777888887776433333322222222222222233344444332112457889999999998888655 5677777
Q ss_pred HHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhh----HHHHHHHHHhhHHHHHHHHHHHhHHHHhh
Q 006822 453 EQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFE----LKNKQSFMRDKIKILESSLNRANIEKAAS 528 (630)
Q Consensus 453 eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~E----LeEEL~~l~~~lksLE~sl~kA~q~ke~t 528 (630)
+|...+.-.+.++-...||=.++++-++.= ..+ |-|.|.+ |-+||..+.+-.+.|+..-+.| .++
T Consensus 451 ~qLtdknlnlEekVklLeetv~dlEalee~----~EQ---L~Esn~ele~DLreEld~~~g~~kel~~r~~aa----qet 519 (1243)
T KOG0971|consen 451 EQLTDKNLNLEEKVKLLEETVGDLEALEEM----NEQ---LQESNRELELDLREELDMAKGARKELQKRVEAA----QET 519 (1243)
T ss_pred HHHHhhccCHHHHHHHHHHHHHHHHHHHHH----HHH---HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH----HHH
Confidence 755544444444444555444455444321 222 3355544 4555666645455554433332 233
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006822 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTS 562 (630)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLedQl~s~ke 562 (630)
+=|-..-..-+-++|.+|+..+..+-||..+..+
T Consensus 520 ~yDrdqTI~KfRelva~Lqdqlqe~~dq~~Ssee 553 (1243)
T KOG0971|consen 520 VYDRDQTIKKFRELVAHLQDQLQELTDQQESSEE 553 (1243)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 4444444555678999999999999998766544
No 39
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.13 E-value=1.2 Score=54.69 Aligned_cols=233 Identities=21% Similarity=0.301 Sum_probs=138.2
Q ss_pred hHHHHHHHHHHHHhhhhhhh-----hhHhhHHHhhhHHHHHhhhhhhh---HH---HHHHHHHHHHHHHHHHhccchHHH
Q 006822 210 ADQQRHILRMLEKSLARELD-----LEKKISELNQNEEQLKLKLHHTE---QV---AFRMEEAAEVVWGRFLEAENSAEV 278 (630)
Q Consensus 210 ~eqqR~iLrMLekSla~Eld-----LEkkL~es~~~eeeLk~kL~~~e---qe---~~~lEE~~~~~~er~~EAENa~Ev 278 (630)
-++.++-++-|+..+..+.. +.........-...++.++++.. ++ ....+.+.+..-+..-.+......
T Consensus 415 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~e~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 494 (1201)
T PF12128_consen 415 REQIEEEYQALEQELRQQSQEQLEELQEQREQLKSELAELKQQLKNPQYTEEEKEQLEQADKRLEQAQEQQNQAQQAVEE 494 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777778877765433 11122222222334444444322 22 222333344444555556666666
Q ss_pred HhhhhHHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhh-hhHHHHHhhcC--------------------------
Q 006822 279 LMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKA-KDMVLQKLEST-------------------------- 331 (630)
Q Consensus 279 L~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~-k~~~lekl~~s-------------------------- 331 (630)
+......+....+..+..|.....+=.+++..+.....+|.. +++-+.=|...
T Consensus 495 ~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p~~gSL~~fL~~~~p~We~tIGKVid~eLL~r~dL~P~l 574 (1201)
T PF12128_consen 495 LQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQLDPQKGSLLEFLRKNKPGWEQTIGKVIDEELLYRTDLEPQL 574 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhCCCcHHHHhHhhCCHHHhcCCCCCCee
Confidence 677777777777777777777777767777777777777763 23322222111
Q ss_pred -------------------ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhH
Q 006822 332 -------------------KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRA 392 (630)
Q Consensus 332 -------------------~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa 392 (630)
..++.....+ .|+.++.....+++.+....++.+..+...+..+..++.++..++..+
T Consensus 575 ~~~~~~dslyGl~LdL~~I~~pd~~~~ee---~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~ 651 (1201)
T PF12128_consen 575 VEDSGSDSLYGLSLDLSAIDVPDYAASEE---ELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQEL 651 (1201)
T ss_pred cCCCcccccceeEeehhhcCCchhhcChH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0122221111 566666677777777777777778888889999999999999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHhhhhhcC-CCCchhhhhhHHHHHHHHHHHHHHhH
Q 006822 393 ESAEEKVTQLTDTNLELSEEINFLKGN-NDSNTKKVGILENQLRDLEIQLQQAK 445 (630)
Q Consensus 393 ~tAesKle~LseTNdELerelk~Lesr-s~~deEK~~~LE~QLKEa~~QLqhA~ 445 (630)
.++..++..+-.....++.+..-.... -..-..++..++.+++..+.+++...
T Consensus 652 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~e~~~~~ 705 (1201)
T PF12128_consen 652 KQAEQDLQRLKNEREQLKQEIEEAKEERKEQIEEQLNELEEELKQLKQELEELL 705 (1201)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998888888777777765544332 11123445555555555554444443
No 40
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.03 E-value=0.43 Score=58.20 Aligned_cols=201 Identities=19% Similarity=0.284 Sum_probs=122.6
Q ss_pred HHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHH----------HhhcCChhHHHHHHHHHHHHHHHHHHHH
Q 006822 285 EMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQ----------KLESTKNSEVLTMKEKVKSLEEQLKESE 354 (630)
Q Consensus 285 el~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~le----------kl~~s~esEv~sLqkKvksLE~qLdes~ 354 (630)
++-.++...+--++-...+.-.++++|+.+.-+.+--...++ ++-+...-+...++..+.+|+..+...+
T Consensus 381 ~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~ 460 (1293)
T KOG0996|consen 381 ELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEE 460 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444555555666666666665555544333333 3333345667777777777777777777
Q ss_pred HHHHHhHhhhhh----hHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhH
Q 006822 355 IRLQNANACFQT----SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGIL 430 (630)
Q Consensus 355 eQL~~A~aklEe----sE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~L 430 (630)
..|..-..++.- ..+++-.++-....+..++-+|.++++.|++.+..|.......-+.+-.|++
T Consensus 461 ~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~------------ 528 (1293)
T KOG0996|consen 461 RELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKG------------ 528 (1293)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
Confidence 766666555543 3668888888888888889999999999999988887766555443333333
Q ss_pred HHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhh
Q 006822 431 ENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDK 510 (630)
Q Consensus 431 E~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~ 510 (630)
+| +. +.+..++ +-..+.+....|.++|.++..++...+..-..-. .|..-+.-++.+
T Consensus 529 --~L-------~~---~~~~~~e----~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~-------~~~~~~~~~rqr 585 (1293)
T KOG0996|consen 529 --KL-------LA---SSESLKE----KKTELDDLKEELPSLKQELKEKEKELPKLRKEER-------NLKSQLNKLRQR 585 (1293)
T ss_pred --HH-------HH---HHHHHHH----HHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHH-------HHHHHHHHHHHH
Confidence 22 21 1222333 5566788888888888887766666555444444 444455555555
Q ss_pred HHHHHHHHHH
Q 006822 511 IKILESSLNR 520 (630)
Q Consensus 511 lksLE~sl~k 520 (630)
+..+-.++..
T Consensus 586 veE~ks~~~~ 595 (1293)
T KOG0996|consen 586 VEEAKSSLSS 595 (1293)
T ss_pred HHHHHHHHHh
Confidence 5554444443
No 41
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.03 E-value=1.8 Score=54.77 Aligned_cols=40 Identities=13% Similarity=0.132 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC
Q 006822 536 TKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (630)
Q Consensus 536 ak~aE~lV~KL~~ErdrLedQl~s~keenK~L~ekld~tk 575 (630)
....+.+-..+..+++.|.++..+..+..-.+-+.+++..
T Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~qL~ 592 (1486)
T PRK04863 553 EDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQ 592 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888899999988888888877777777663
No 42
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=96.98 E-value=0.00018 Score=84.30 Aligned_cols=228 Identities=22% Similarity=0.292 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhh
Q 006822 338 TMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLK 417 (630)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Le 417 (630)
.+++.++-+..++++++.++..+....+.....+..+++++..|..++..+......|.--...+..-.+++...+..|-
T Consensus 571 e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~el~e~~~~~~~l~ 650 (859)
T PF01576_consen 571 EAQKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELREALEQAERARKQAESELDELQERLNELT 650 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666677666666666666666677888899999999999999998888888888888888888888877776
Q ss_pred cCCCCchhhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHh--------------------hhHH-HHHhHHHHHHHHhhhh
Q 006822 418 GNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQS--------------------MLYS-AIWDMETLIEDLKSKV 476 (630)
Q Consensus 418 srs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~--------------------mkys-ei~dme~vIEdLk~Kl 476 (630)
+...+-..-...||..+-.....|..+...+..+.++.. +... .=+.++.-|.||+.++
T Consensus 651 ~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ek~kka~~~~~~l~~eL~~Eq~~~~~le~~k~~LE~q~keLq~rl 730 (859)
T PF01576_consen 651 SQNSSLSEEKRKLEAEIQQLEEELEEEQSEAEAAEEKAKKAQAQAAQLAEELRQEQDHNQHLEKEKKALERQVKELQARL 730 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554433333344555555555555555544444433111 0111 1123345566677776
Q ss_pred hhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHH---HHH
Q 006822 477 SKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQR---ELI 553 (630)
Q Consensus 477 ~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~Er---drL 553 (630)
..+|.-+-..=. .-++.+.+++..||..|+.-..+...+.|-+-.--+-+.+++.+..-++ +++
T Consensus 731 ~e~E~~~~~~~k-------------~~i~kLE~ri~eLE~~Le~E~r~~~~~~k~~rk~er~~kEl~~q~ee~~k~~~~~ 797 (859)
T PF01576_consen 731 EEAEQSALKGGK-------------KQIAKLEARIRELEEELESEQRRRAEAQKQLRKLERRVKELQFQVEEERKNAERL 797 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhhhcccc-------------cHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHH
Confidence 666644322111 1345777788888887777666666554333333333333443333332 344
Q ss_pred HHHHHHHHHhhhHHHHHHhhcCCCC
Q 006822 554 QKQVYSLTSENKLLVEKLQYSGKSS 578 (630)
Q Consensus 554 edQl~s~keenK~L~ekld~tkk~~ 578 (630)
++++-.+..+.|.+-..++.+..++
T Consensus 798 ~d~~~kl~~k~k~~krq~eeaEe~~ 822 (859)
T PF01576_consen 798 QDLVDKLQLKLKQLKRQLEEAEEEA 822 (859)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 4444444444444444444444333
No 43
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.84 E-value=0.72 Score=47.42 Aligned_cols=71 Identities=14% Similarity=0.220 Sum_probs=46.7
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhHHHHhh---HHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 006822 499 ELKNKQSFMRDKIKILESSLNRANIEKAAS---AKEVNH----RTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVE 569 (630)
Q Consensus 499 ELeEEL~~l~~~lksLE~sl~kA~q~ke~t---lKeae~----Rak~aE~lV~KL~~ErdrLedQl~s~keenK~L~e 569 (630)
.+.+|++.++..+.+|+..++.....+... +.+.+. ...-....+..|..++..+..++.....+|..|.+
T Consensus 213 ~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~ 290 (312)
T PF00038_consen 213 SAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQELLD 290 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 666677777777777777777666666555 333332 23445566777788888888888777777777643
No 44
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.83 E-value=2 Score=52.20 Aligned_cols=67 Identities=18% Similarity=0.229 Sum_probs=59.2
Q ss_pred hhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhccc
Q 006822 233 KISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNG 299 (630)
Q Consensus 233 kL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~a 299 (630)
.+++++.-.+..++|+.|...|.+..+-.......+...-.+.+.++...-..+-.+|+++-|+-++
T Consensus 407 ~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l~~~~~~ 473 (1174)
T KOG0933|consen 407 TLSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVKDIEELDALQNEVEKLKKRLQSLGYKIGQ 473 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcch
Confidence 3556666778889999999999999999999999999999999999999999999999999888763
No 45
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.82 E-value=2 Score=52.40 Aligned_cols=38 Identities=11% Similarity=0.054 Sum_probs=23.4
Q ss_pred HhhhHHHHHHhhcCCCC--cceeccCCCCCCcceeeccCC
Q 006822 562 SENKLLVEKLQYSGKSS--SATMYNAGDTDDKELLINPTN 599 (630)
Q Consensus 562 eenK~L~ekld~tkk~~--~~~~~~~~~~~~~~~~~~~~~ 599 (630)
.....|-.=++..+-.. |.++...+.+-+-+..-+|.+
T Consensus 531 ~D~~~Lr~i~~~~~~~~~~ptIvvs~~~~~~y~~~~~p~~ 570 (1074)
T KOG0250|consen 531 KDARILRAIMRRLKIPGNRPTIVVSSFTPFDYSVGRNPGY 570 (1074)
T ss_pred hhHHHHHHHHHHcCCCCCCCcEEEecCCccccccccCCCC
Confidence 34445555555556554 666777777777666666665
No 46
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.79 E-value=2.1 Score=51.99 Aligned_cols=314 Identities=21% Similarity=0.257 Sum_probs=166.8
Q ss_pred ccccccccccchHHHHHHHHHHHH----------hhhhhhhhhHhhHHHhhh----HHHHHhhhhhhhHHHHHHHHHH--
Q 006822 199 SNINGKSKMKNADQQRHILRMLEK----------SLARELDLEKKISELNQN----EEQLKLKLHHTEQVAFRMEEAA-- 262 (630)
Q Consensus 199 ~~~~~~~~mqt~eqqR~iLrMLek----------Sla~EldLEkkL~es~~~----eeeLk~kL~~~eqe~~~lEE~~-- 262 (630)
|++--..+|.+.| ||-|+|- --|-+-.+|||=.-.+++ .+++.=+|.-.-+|+..+=|-.
T Consensus 148 GrITkVLNMKp~E----ILsMvEEAAGTrmye~kKe~A~ktiekKetKlkEi~~lL~eeI~P~l~KLR~Ers~~lE~q~~ 223 (1174)
T KOG0933|consen 148 GRITKVLNMKPSE----ILSMVEEAAGTRMYENKKEAAEKTIEKKETKLKEINTLLREEILPRLEKLREERSQYLEYQKI 223 (1174)
T ss_pred ccchhhhcCCcHH----HHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 5666778999887 8999984 344555555544333332 3444444544445544332222
Q ss_pred ---HHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhccc------chhchhHHHHHHHhHHHHHhhhhHHHHHhhcC--
Q 006822 263 ---EVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNG------SLQRESELKSKLGDFIEQLKAKDMVLQKLEST-- 331 (630)
Q Consensus 263 ---~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~a------s~~REsel~sKL~~~~eqL~~k~~~lekl~~s-- 331 (630)
.+-..|+..| --++++ +..-..+...++..+.+.+..-+..++.++..
T Consensus 224 ~~dle~l~R~~ia---------------------~eY~~~~~~~~~~~~~i~e~~~~i~~l~e~~~k~~~ei~~le~~ik 282 (1174)
T KOG0933|consen 224 NRDLERLSRICIA---------------------YEYLQAEEKRKNSAHEIEEMKDKIAKLDESLGKTDKEIESLEKEIK 282 (1174)
T ss_pred HHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1111222111 111111 12223445555555555555444444333332
Q ss_pred -----C----hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 006822 332 -----K----NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQL 402 (630)
Q Consensus 332 -----~----esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~L 402 (630)
+ .-++.+|..++.++-...-.....+...+..+..-+.++..|...|.+++..+..=+.+....+.-...+
T Consensus 283 ei~~~rd~em~~~~~~L~~~~~~~~~~~tr~~t~l~~~~~tl~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ 362 (1174)
T KOG0933|consen 283 EIEQQRDAEMGGEVKALEDKLDSLQNEITREETSLNLKKETLNGEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKL 362 (1174)
T ss_pred HHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 2 2334556566555555555555555566666655577888888889888888888777777654444443
Q ss_pred hhhhHHHH-------HHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhh
Q 006822 403 TDTNLELS-------EEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSK 475 (630)
Q Consensus 403 seTNdELe-------relk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk~K 475 (630)
-+.-.+.. ..+..|..--++.++--..++.||..++.++-.|....+.+.- + +.|....+...+++
T Consensus 363 ke~~~~~s~~~e~~e~~~eslt~G~Ss~~~~e~~l~~ql~~aK~~~~~~~t~~k~a~~----k---~e~~~~elk~~e~e 435 (1174)
T KOG0933|consen 363 KEAFQEDSKLLEKAEELVESLTAGLSSNEDEEKTLEDQLRDAKITLSEASTEIKQAKL----K---LEHLRKELKLREGE 435 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCccchhhHHHHHHHHHHHHHHHHHHHHHHHH----H---HHHHHHHHHhhhhH
Confidence 33333222 2233333222223334678999999998766666555554443 2 33444444433344
Q ss_pred hhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 006822 476 VSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQK 555 (630)
Q Consensus 476 l~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLed 555 (630)
+. ..+..+....++|..+.+-++.|+.++....-.... -+....|..-.-+-+.+|-.+.++|..
T Consensus 436 ~~--------------t~~~~~~~~~~~ld~~q~eve~l~~~l~~l~~~~~~-~e~l~q~~~~l~~~~~~lk~~~~~l~a 500 (1174)
T KOG0933|consen 436 LA--------------TASAEYVKDIEELDALQNEVEKLKKRLQSLGYKIGQ-EEALKQRRAKLHEDIGRLKDELDRLLA 500 (1174)
T ss_pred hh--------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcch-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33 334444488899999999999888887765433222 222223332233334555566666665
Q ss_pred HHHH
Q 006822 556 QVYS 559 (630)
Q Consensus 556 Ql~s 559 (630)
++..
T Consensus 501 ~~~~ 504 (1174)
T KOG0933|consen 501 RLAN 504 (1174)
T ss_pred hhcc
Confidence 5533
No 47
>PRK01156 chromosome segregation protein; Provisional
Probab=96.69 E-value=2 Score=50.56 Aligned_cols=29 Identities=17% Similarity=0.198 Sum_probs=15.2
Q ss_pred HhhHHHHHHHHHHHHHhhHhhhhhhhhcc
Q 006822 154 EGSLKESQEHVSELKMQSAKFQRVLSYFI 182 (630)
Q Consensus 154 ~~sLkq~qe~~~ei~~qsa~f~r~~~~~~ 182 (630)
..-+.+.+..+.+++.+...+...+..+.
T Consensus 415 ~~~~~~l~~~i~~l~~~i~~l~~~~~el~ 443 (895)
T PRK01156 415 NVKLQDISSKVSSLNQRIRALRENLDELS 443 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555565665565555554433
No 48
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.60 E-value=0.27 Score=57.34 Aligned_cols=219 Identities=18% Similarity=0.281 Sum_probs=119.0
Q ss_pred HHHHHHHhhhhhhhhhHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhh
Q 006822 216 ILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQF 295 (630)
Q Consensus 216 iLrMLekSla~EldLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf 295 (630)
...=||.-|.+ |-..|..+|++|.||+.++...++- +| .+++++..++..-..+|.
T Consensus 419 a~~rLE~dvkk---LraeLq~~Rq~E~ELRsqis~l~~~------------Er---------~lk~eL~qlr~ene~Lq~ 474 (697)
T PF09726_consen 419 AISRLEADVKK---LRAELQSSRQSEQELRSQISSLTNN------------ER---------SLKSELSQLRQENEQLQN 474 (697)
T ss_pred HHHHHHHHHHH---HHHHHHhhhhhHHHHHHHHhhcccc------------ch---------HHHHHHHHHHHHHHHHHH
Confidence 34458888888 8889999999999999998754431 11 234444444443333333
Q ss_pred hcccch-hchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhH-------------
Q 006822 296 NLNGSL-QRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNAN------------- 361 (630)
Q Consensus 296 ~L~as~-~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~------------- 361 (630)
-+.... .|+.| +.++.+|+. -+...+++-..+|.||.+-.-+-..+.
T Consensus 475 Kl~~L~~aRq~D-----Kq~l~~LEk--------------rL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~ 535 (697)
T PF09726_consen 475 KLQNLVQARQQD-----KQSLQQLEK--------------RLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQAT 535 (697)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhc
Confidence 222221 12222 112222221 122444555566666655443322111
Q ss_pred --hhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHH-HHH
Q 006822 362 --ACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLR-DLE 438 (630)
Q Consensus 362 --aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLK-Ea~ 438 (630)
..-|.+.....+|++.|.-|.-++...|++...++.++..+-.-.-|...+...|-+-=.+--||-..||+.|. |.+
T Consensus 536 r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtr 615 (697)
T PF09726_consen 536 RQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETR 615 (697)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 11122355778888888888888888888888888888655554222222222222211112346677777775 333
Q ss_pred HHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhh
Q 006822 439 IQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSK 478 (630)
Q Consensus 439 ~QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~r 478 (630)
+.|.==.|. .++.+|....-..+..++.-|.|||.|+..
T Consensus 616 iKldLfsaL-g~akrq~ei~~~~~~~~d~ei~~lk~ki~~ 654 (697)
T PF09726_consen 616 IKLDLFSAL-GDAKRQLEIAQGQLRKKDKEIEELKAKIAQ 654 (697)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333322233 234455666666777777778888887653
No 49
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.55 E-value=2.2 Score=49.05 Aligned_cols=317 Identities=18% Similarity=0.164 Sum_probs=158.0
Q ss_pred hhhhhhhhhHhhHHHhhhHHHHHhhhhhhhH----HHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcc
Q 006822 223 SLARELDLEKKISELNQNEEQLKLKLHHTEQ----VAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLN 298 (630)
Q Consensus 223 Sla~EldLEkkL~es~~~eeeLk~kL~~~eq----e~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~ 298 (630)
|--+=|+.+-. +...+.+|+.+|...-+ +...|+.....+.+.+- ..+-.-|--..+..+-..+|.|.|
T Consensus 204 ~Y~~fl~g~d~---~~~~~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~----e~ek~~~~~eslre~~~~L~~D~n 276 (581)
T KOG0995|consen 204 SYTSFLKGEDN---SSELEDELKHRLEKYFTSIANEIEDLKKTNRELEEMIN----EREKDPGKEESLREKKARLQDDVN 276 (581)
T ss_pred HHHHHhccCcc---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcCcchHHHHHHHHHHHHhHHH
Confidence 33444444444 34456677777654444 23334444444444443 333344444444555555555554
Q ss_pred cchhchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHH---HHHHHhHhhhhhhHHHHHhHH
Q 006822 299 GSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESE---IRLQNANACFQTSQEQLNEMD 375 (630)
Q Consensus 299 as~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~---eQL~~A~aklEesE~EVaaLe 375 (630)
-..--.+.+++|-..-...|+....+++. +++|...|+.+...|-++++.-. ++....+...++-..++..++
T Consensus 277 K~~~y~~~~~~k~~~~~~~l~~l~~Eie~----kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~ 352 (581)
T KOG0995|consen 277 KFQAYVSQMKSKKQHMEKKLEMLKSEIEE----KEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQ 352 (581)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33222333333332222222222222221 46677777777776666655322 122222222222222333222
Q ss_pred HHHHHH----HHHHHhhhhhHHHHHHHHHHHhhhhHHHHHH-hhhhhc--CCCC----c----hhhh-hhHHHHHHHHHH
Q 006822 376 NFIESL----KESLYGAESRAESAEEKVTQLTDTNLELSEE-INFLKG--NNDS----N----TKKV-GILENQLRDLEI 439 (630)
Q Consensus 376 rrIelL----KEel~rAEsRa~tAesKle~LseTNdELere-lk~Les--rs~~----d----eEK~-~~LE~QLKEa~~ 439 (630)
..+..| .+.=..++.+...-+.+...+-..+..+... .....| ++-- . -..+ -.|..-+.+...
T Consensus 353 ~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l~~~~~~~n~~~~pe~~~~~~~d~k~~V~~~l~el~~ei~~ 432 (581)
T KOG0995|consen 353 SELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIRRIKLGIAENSKNLERNPERAATNGVDLKSYVKPLLKELLDEISE 432 (581)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccCccccccchhHhHHHHHHHHHHHHH
Confidence 222222 2222344556666667777777777777766 555555 2110 0 0011 011111222221
Q ss_pred HHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHH
Q 006822 440 QLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLN 519 (630)
Q Consensus 440 QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~ 519 (630)
++..|+. .. .-+-+.++.|.++|++++.-+..-+.++-.++++|-..-+++. +|..--+.-++.||.++.
T Consensus 433 ~~~~~~~---~~----~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~e---ee~~k~~~E~e~le~~l~ 502 (581)
T KOG0995|consen 433 ELHEAEN---EL----ETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAE---EEWKKCRKEIEKLEEELL 502 (581)
T ss_pred HHHHHHH---HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 1211111 11 1144567788888998888888888888888888886655544 556667777788887777
Q ss_pred HHhHHHHhhHHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 006822 520 RANIEKAASAKEVNHRTKLMM----EMVMQLATQRELIQKQVYSL 560 (630)
Q Consensus 520 kA~q~ke~tlKeae~Rak~aE----~lV~KL~~ErdrLedQl~s~ 560 (630)
..+..=....++++.+-+-++ ++|.-..-+|..+..||..+
T Consensus 503 ~l~l~~~~~m~~a~~~v~s~e~el~~~~~~~~eer~ki~~ql~~~ 547 (581)
T KOG0995|consen 503 NLKLVLNTSMKEAEELVKSIELELDRMVATGEEERQKIAKQLFAV 547 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766655555666666544443 45555555666666665543
No 50
>PRK11637 AmiB activator; Provisional
Probab=96.48 E-value=1.6 Score=47.58 Aligned_cols=34 Identities=3% Similarity=0.064 Sum_probs=21.7
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006822 528 SAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLT 561 (630)
Q Consensus 528 tlKeae~Rak~aE~lV~KL~~ErdrLedQl~s~k 561 (630)
.+..+....+-....+.+|..+..+|...|..+.
T Consensus 220 ~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~l~ 253 (428)
T PRK11637 220 TLTGLESSLQKDQQQLSELRANESRLRDSIARAE 253 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555566777777777777776654
No 51
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.37 E-value=4.1 Score=50.28 Aligned_cols=139 Identities=21% Similarity=0.270 Sum_probs=71.4
Q ss_pred hHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhcc--------chhhH
Q 006822 429 ILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSE--------DNFEL 500 (630)
Q Consensus 429 ~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse--------~N~EL 500 (630)
.|+.++..++.+++.+..-.++... .++..-..++.++.++.+++...+.++.+..-|.. .+..+
T Consensus 604 ~L~~~l~~~~~~l~~~~~~~~~~e~-------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 676 (1201)
T PF12128_consen 604 ELRERLEQAEDQLQSAEERQEELEK-------QLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAK 676 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555433333222 22223334444445555555555444444442221 12344
Q ss_pred HHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh
Q 006822 501 KNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRT--------KLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQ 572 (630)
Q Consensus 501 eEEL~~l~~~lksLE~sl~kA~q~ke~tlKeae~Ra--------k~aE~lV~KL~~ErdrLedQl~s~keenK~L~ekld 572 (630)
++...-+...+..++..+.+..+....+..+...+. .........+...++.+..++-..+.+++.--..|+
T Consensus 677 ~~~~~~~~~~l~~l~~~l~~~~~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~le 756 (1201)
T PF12128_consen 677 EERKEQIEEQLNELEEELKQLKQELEELLEELKEQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAKEQLKELE 756 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666677777777777766666655444332 223445555666666666666666655555555554
Q ss_pred hc
Q 006822 573 YS 574 (630)
Q Consensus 573 ~t 574 (630)
+-
T Consensus 757 ~~ 758 (1201)
T PF12128_consen 757 QQ 758 (1201)
T ss_pred HH
Confidence 44
No 52
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.36 E-value=2.5 Score=47.69 Aligned_cols=217 Identities=18% Similarity=0.265 Sum_probs=128.1
Q ss_pred cchHHHHHHHHHHHHhhhhhhhhhHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHH
Q 006822 208 KNADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEML 287 (630)
Q Consensus 208 qt~eqqR~iLrMLekSla~EldLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~ 287 (630)
++.+++.+|+. ++. ..-..+++.|..+....+.|+..+-....-.. ++..+-.....|.+..+...
T Consensus 197 eAeee~~~~~~--~~~-~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~-----------kL~~a~~~l~~Lq~El~~~~ 262 (522)
T PF05701_consen 197 EAEEERIEIAA--ERE-QDAEEWEKELEEAEEELEELKEELEAAKDLES-----------KLAEASAELESLQAELEAAK 262 (522)
T ss_pred HHHHHHHHHHH--HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH
Confidence 44556666653 332 23346788888888888888877744333333 44444445555665555544
Q ss_pred h-hhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh
Q 006822 288 G-RFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQT 366 (630)
Q Consensus 288 g-kLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEe 366 (630)
. ++.... ......+.+...|.+....|+.-...|++.. +|+..|+..+.+|..+|.....-+...+.+...
T Consensus 263 ~~~l~~~~----~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k----~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~ 334 (522)
T PF05701_consen 263 ESKLEEEA----EAKEKSSELQSSLASAKKELEEAKKELEKAK----EEASSLRASVESLRSELEKEKEELERLKEREKE 334 (522)
T ss_pred HHHHhhhH----HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 222221 3556667778888888888888888887764 678899999999999999888888888777666
Q ss_pred hHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhHh
Q 006822 367 SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKV 446 (630)
Q Consensus 367 sE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~a 446 (630)
....|+.|+..+.-++.++.-+...-..+-.....+..+-.++..+....+.. ....-..+..++..++++++
T Consensus 335 a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~e-------a~~~~~E~~~~k~E~e~~ka 407 (522)
T PF05701_consen 335 ASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKE-------AEEAKEEVEKAKEEAEQTKA 407 (522)
T ss_pred HHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 66666665555555555553333322222222233333333333333222221 22222345556666666666
Q ss_pred hhHhHHH
Q 006822 447 SSEASQE 453 (630)
Q Consensus 447 saEas~e 453 (630)
.+.+...
T Consensus 408 ~i~t~E~ 414 (522)
T PF05701_consen 408 AIKTAEE 414 (522)
T ss_pred HHHHHHH
Confidence 6666655
No 53
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.35 E-value=1.2 Score=48.99 Aligned_cols=36 Identities=6% Similarity=0.194 Sum_probs=28.2
Q ss_pred HhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhhcc
Q 006822 147 EKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFI 182 (630)
Q Consensus 147 ~~kL~~~~~sLkq~qe~~~ei~~qsa~f~r~~~~~~ 182 (630)
..++...+..+.+.+.++..+..+.+.|++.+..+.
T Consensus 173 k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~ 208 (562)
T PHA02562 173 KDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQR 208 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 667777888888888888888888888888876654
No 54
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.35 E-value=4 Score=49.92 Aligned_cols=34 Identities=24% Similarity=0.290 Sum_probs=20.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006822 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTS 562 (630)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLedQl~s~ke 562 (630)
+++.+....-++.-..+|.+.++....+|-.++.
T Consensus 431 ~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~ 464 (1074)
T KOG0250|consen 431 AKEEEEEKEHIEGEILQLRKKIENISEELKDLKK 464 (1074)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555556666666666666666655555443
No 55
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=96.27 E-value=2 Score=49.31 Aligned_cols=86 Identities=19% Similarity=0.287 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHh--------------hhhhHHHHHHHH
Q 006822 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYG--------------AESRAESAEEKV 399 (630)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~r--------------AEsRa~tAesKl 399 (630)
+|+..|..|+...++.+....+.+.+...-+-..+++++.+.++|..+++++.+ +-..++....--
T Consensus 120 ~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr 199 (546)
T KOG0977|consen 120 EELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLR 199 (546)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 445555555555544444444444433333344456666666666666655543 333333333333
Q ss_pred HHHhhhhHHHHHHhhhhhcC
Q 006822 400 TQLTDTNLELSEEINFLKGN 419 (630)
Q Consensus 400 e~LseTNdELerelk~Lesr 419 (630)
..+.-....|..++.|+..-
T Consensus 200 ~d~~n~~q~Lleel~f~~~~ 219 (546)
T KOG0977|consen 200 VDLQNRVQTLLEELAFLKRI 219 (546)
T ss_pred HHHHhHHHHHHHHHHHHHhc
Confidence 44556667777777777754
No 56
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.09 E-value=2.3 Score=50.03 Aligned_cols=58 Identities=19% Similarity=0.158 Sum_probs=37.3
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHH---HHHHhHHHHHHHHHHHHHHHHHHHHH
Q 006822 499 ELKNKQSFMRDKIKILESSLNRANIEKAASAK---EVNHRTKLMMEMVMQLATQRELIQKQ 556 (630)
Q Consensus 499 ELeEEL~~l~~~lksLE~sl~kA~q~ke~tlK---eae~Rak~aE~lV~KL~~ErdrLedQ 556 (630)
.|--.|+.++.+---||.+|..-+--|..-.. |+--.-+.+...+.+=.+||..|...
T Consensus 591 ~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~k 651 (697)
T PF09726_consen 591 VLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAK 651 (697)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667778888888888888877777766633 33334555555555555555555443
No 57
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=95.97 E-value=5.3 Score=49.49 Aligned_cols=89 Identities=24% Similarity=0.272 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCC
Q 006822 341 EKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNN 420 (630)
Q Consensus 341 kKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs 420 (630)
++.+.|+.+++.+..++..++... ...+.-.+....+.-.+..++--+.+..++|..+..++.++...+..++..+
T Consensus 508 ~~~~~l~~~~~~~~eele~~q~~~----~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e~~ 583 (1317)
T KOG0612|consen 508 AKKRKLEALVRQLEEELEDAQKKN----DNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELEEN 583 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhhcc
Confidence 344444444444444444442221 2223334445555566666666677777888888888888888888777755
Q ss_pred CCchhhhhhHHHH
Q 006822 421 DSNTKKVGILENQ 433 (630)
Q Consensus 421 ~~deEK~~~LE~Q 433 (630)
..-.+++..|+.-
T Consensus 584 ~~~~d~l~~le~~ 596 (1317)
T KOG0612|consen 584 RDLEDKLSLLEES 596 (1317)
T ss_pred ccHHHHHHHHHHH
Confidence 5556777777655
No 58
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=95.82 E-value=0.0024 Score=73.40 Aligned_cols=196 Identities=22% Similarity=0.282 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHhhhhhH------HHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHH
Q 006822 370 QLNEMDNFIESLKESLYGAESRA------ESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQ 443 (630)
Q Consensus 370 EVaaLerrIelLKEel~rAEsRa------~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqh 443 (630)
.++..+..|..|+.++...+..+ ..=...+..|..+|..+..+++.|+... +.+..|+.+.+..+.+|+.
T Consensus 224 ~~~e~e~~i~~Le~el~~~~~~~~i~k~l~~ql~~i~~LE~en~~l~~Elk~Lr~~~----~n~elLeEe~~sLq~kl~~ 299 (722)
T PF05557_consen 224 SLAEAEQKIKELEAELKDQESDAEINKELKEQLAHIRELEKENRRLREELKHLRQSQ----ENVELLEEEKRSLQRKLER 299 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhhHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHH
Confidence 44445677777777666655543 1123467789999999999999999864 3455566665555555554
Q ss_pred hHhhhHhHHH---HHhhhHHHHHhHHHHHHHHhhhhhhhh---hhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHH
Q 006822 444 AKVSSEASQE---QQSMLYSAIWDMETLIEDLKSKVSKAE---SKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESS 517 (630)
Q Consensus 444 A~asaEas~e---qQ~mkysei~dme~vIEdLk~Kl~rAE---~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~s 517 (630)
+...-..-.. +-..+-++......++.+.-....-.+ .+.....-.+..|.+.+-.+.-+++.+...+..|+..
T Consensus 300 ~E~~~~el~~lq~e~~~Le~el~sW~sl~~~~~~~~~sPe~l~~~l~~lq~~~~~L~ek~g~~~~~~~~l~~~~~~Le~e 379 (722)
T PF05557_consen 300 LEELEEELAELQLENEKLEDELNSWESLLQDIGLEFDSPEDLARALVQLQQENASLTEKLGSLQSELRELEEEIQELEQE 379 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 4322221111 111122333333344442110000000 0111222234444444444444444444444444443
Q ss_pred HHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCCCcc
Q 006822 518 LNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSGKSSSA 580 (630)
Q Consensus 518 l~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQl~s~keenK~L~ekld~tkk~~~~ 580 (630)
...+...+..-. .....+...+.||+.|..-..++...|-.-|+.-.++...
T Consensus 380 -------~~~l~~~~~~l~----~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~e~~~ 431 (722)
T PF05557_consen 380 -------KEQLLKEIEELE----ASLEALKKLIRRLERQKALATKERDYLRAQLKSYDKEETT 431 (722)
T ss_dssp ---------------------------------------------------------------
T ss_pred -------HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 333322222211 1122344455667777777777777766666665555433
No 59
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=6.2 Score=46.58 Aligned_cols=224 Identities=25% Similarity=0.270 Sum_probs=114.7
Q ss_pred ccchHHHHhhhhHHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhcCChh--HHHHHHHHHHHHHHH
Q 006822 272 AENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNS--EVLTMKEKVKSLEEQ 349 (630)
Q Consensus 272 AENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s~es--Ev~sLqkKvksLE~q 349 (630)
+.=..+.++|-+++-.++|+ .|...-.+.+.++-..+.+..-+.-. -.-....++..++.+
T Consensus 376 ~~~~le~~k~~~ke~~~~~~-----------------~ka~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~ 438 (698)
T KOG0978|consen 376 NELRLEMLKSLLKEQRDKLQ-----------------VKARAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEEL 438 (698)
T ss_pred HHHHHHHHhCCCHHHHhHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHH
Confidence 33445778888888888777 45555555555555555544433000 000111233344444
Q ss_pred HHHHHHHHHHhHhhhhh---hHHHHHhHHHHHHHHHHHHHhhhhhHHHHH-------HHHHHHhhhhHHHHHHhhhhhcC
Q 006822 350 LKESEIRLQNANACFQT---SQEQLNEMDNFIESLKESLYGAESRAESAE-------EKVTQLTDTNLELSEEINFLKGN 419 (630)
Q Consensus 350 Ldes~eQL~~A~aklEe---sE~EVaaLerrIelLKEel~rAEsRa~tAe-------sKle~LseTNdELerelk~Lesr 419 (630)
..+.+-......+-+.+ .-+-.-+|+.+|.-|=.++.+++-+.=-.- .+...|.+.-+.++..+.-|.+.
T Consensus 439 ~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~ 518 (698)
T KOG0978|consen 439 SEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKAS 518 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433333333322222 133444566666666666666665544333 33444444444444444444444
Q ss_pred CCCchhhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHh--hhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccch
Q 006822 420 NDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQS--MLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDN 497 (630)
Q Consensus 420 s~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~--mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N 497 (630)
...-..++.-||.|++-.- =.-..-+.+--..+|. |.-.++.+...-.++||.++.+.+...+..+.+|.
T Consensus 519 ~~~~~~~i~~leeq~~~lt--~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~------ 590 (698)
T KOG0978|consen 519 VDKLELKIGKLEEQERGLT--SNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYA------ 590 (698)
T ss_pred HHHHHHHHHHHHHHHHHhh--HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 3323444555555555332 1111122222222222 12235666667777888888888888888888777
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHH
Q 006822 498 FELKNKQSFMRDKIKILESSLNRA 521 (630)
Q Consensus 498 ~ELeEEL~~l~~~lksLE~sl~kA 521 (630)
++..||...+-+.+-||.-+.+.
T Consensus 591 -e~~~ele~~~~k~~rleEE~e~L 613 (698)
T KOG0978|consen 591 -ELELELEIEKFKRKRLEEELERL 613 (698)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777666554443
No 60
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.64 E-value=0.51 Score=55.84 Aligned_cols=123 Identities=18% Similarity=0.221 Sum_probs=71.3
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhH---HHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHh
Q 006822 368 QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNL---ELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQA 444 (630)
Q Consensus 368 E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNd---ELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA 444 (630)
++++......+..|++.+.--+.++..+-++.-.+++-++ -.+++++.++..+-.-.-+...+.++|.+.+.-.+.-
T Consensus 691 ~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~ 770 (970)
T KOG0946|consen 691 EEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQGAEASKTQNEELNAALSENKKLENDQELLTKELNKKNADIESF 770 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHhHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 5566667677777777777777777765555544444221 2223333333332212334667777775555455666
Q ss_pred HhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhh
Q 006822 445 KVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCI 491 (630)
Q Consensus 445 ~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~ 491 (630)
++....+.-.|+-.-..+.|.+.|+|+++. +.---+|.-....++.
T Consensus 771 k~~~~~a~~~~~~~~~~~~~qeqv~El~~~-l~e~~~~l~~~q~e~~ 816 (970)
T KOG0946|consen 771 KATQRSAELSQGSLNDNLGDQEQVIELLKN-LSEESTRLQELQSELT 816 (970)
T ss_pred HHHHhhhhcccchhhhhhhhHHHHHHHHHh-hhhhhhHHHHHHHHHH
Confidence 666666666677778889999999998665 3333333333333333
No 61
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=95.56 E-value=0.0034 Score=73.91 Aligned_cols=210 Identities=18% Similarity=0.256 Sum_probs=0.0
Q ss_pred HhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhchhHHHHHH
Q 006822 232 KKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKL 311 (630)
Q Consensus 232 kkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL 311 (630)
..|.+.+..-.+..--++-+...+..|+.....+...+-++++..-.|.-.-..+..-|.-++-.|. .|+-.+..|
T Consensus 187 ~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~le----eEtr~k~~L 262 (859)
T PF01576_consen 187 AQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLE----EETRAKQAL 262 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH----hHhhhhhhh
Confidence 3344444444444444444444555555555555555555555544443333333333333322222 222222222
Q ss_pred HhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh--------HHHHHhHHHHHHHHHH
Q 006822 312 GDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS--------QEQLNEMDNFIESLKE 383 (630)
Q Consensus 312 ~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEes--------E~EVaaLerrIelLKE 383 (630)
.....+++ ..++.|...-+++ .+-...++.++...+.++..++.+++.- +.-=..|.+.|..+.+
T Consensus 263 ~~~l~~le---~e~~~L~eqleeE----~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e 335 (859)
T PF01576_consen 263 EKQLRQLE---HELEQLREQLEEE----EEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQE 335 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHH---HHHHHHHHHHhhh----hhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 22222222 1222222211111 1122334555555555555555555442 1111244455555555
Q ss_pred HHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhHhhhHhHH
Q 006822 384 SLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQ 452 (630)
Q Consensus 384 el~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~ 452 (630)
.+..+..+..+.+-.+.-|+.-...+...+.-..+.....+.|...++.+|-+.+..+....+--+++.
T Consensus 336 ~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q 404 (859)
T PF01576_consen 336 QLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQ 404 (859)
T ss_dssp ---------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555544444444444444444444444444444443333344455555555555433333333333333
No 62
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=95.53 E-value=3.4 Score=42.30 Aligned_cols=208 Identities=16% Similarity=0.213 Sum_probs=114.6
Q ss_pred hhhHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhchhHHH
Q 006822 229 DLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELK 308 (630)
Q Consensus 229 dLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~ 308 (630)
.+|+.+....+-.+.|..+...+-.-...+...++..+.|-..-.-.+.-+.....+++.++...-- ++....-.+|.
T Consensus 49 ~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~--~~~~~~~~~l~ 126 (264)
T PF06008_consen 49 PLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNE--NGDQLPSEDLQ 126 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--ccCCCCHHHHH
Confidence 3455666666667778888887777778888888888887776666666666666677766654433 66667788898
Q ss_pred HHHHhHHHHHhh-hhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHh
Q 006822 309 SKLGDFIEQLKA-KDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYG 387 (630)
Q Consensus 309 sKL~~~~eqL~~-k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~r 387 (630)
.+|+.+..=|.. |...+...+..-+.|...-++=+..+..+|..-..+.... .+.....++..+.++.+|.+-+.+
T Consensus 127 ~~l~ea~~mL~emr~r~f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~~l---~~~i~~~L~~~~~kL~Dl~~~l~e 203 (264)
T PF06008_consen 127 RALAEAQRMLEEMRKRDFTPQRQNAEDELKEAEDLLSRVQKWFQKPQQENESL---AEAIRDDLNDYNAKLQDLRDLLNE 203 (264)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888766553 1111222222212222222211111111211111111111 122344666777777777777777
Q ss_pred hhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhHhhh
Q 006822 388 AESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSS 448 (630)
Q Consensus 388 AEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asa 448 (630)
|......|...+..-..+-.++++....+... .......|.+++.-|.+|....
T Consensus 204 A~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~-------~~~~~~~L~~a~~~L~~a~~ll 257 (264)
T PF06008_consen 204 AQNKTREAEDLNRANQKNLEDLEKKKQELSEQ-------QNEVSETLKEAEDLLDQANDLL 257 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 77777766665555555555555444444432 3444455555554444444333
No 63
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.50 E-value=3.1 Score=47.73 Aligned_cols=302 Identities=15% Similarity=0.166 Sum_probs=160.4
Q ss_pred hHhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhhcccCCCcccccccccCCcccccccccccchHHHHHHHHHHHHhhh
Q 006822 146 MEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFIHGNNDEALEFSANGQLSNINGKSKMKNADQQRHILRMLEKSLA 225 (630)
Q Consensus 146 ~~~kL~~~~~sLkq~qe~~~ei~~qsa~f~r~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~mqt~eqqR~iLrMLekSla 225 (630)
+.++|.+|=+..+++..|=..+..+.--|+.++.. +. ++++...
T Consensus 47 LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~------~t----------s~ik~~y-------------------- 90 (546)
T KOG0977|consen 47 LNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGR------ET----------SGIKAKY-------------------- 90 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC------CC----------cchhHHh--------------------
Confidence 36677777777777777776666666666655421 11 2222222
Q ss_pred hhhhhhHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhchh
Q 006822 226 RELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRES 305 (630)
Q Consensus 226 ~EldLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REs 305 (630)
|..|..++.+.++-.-..+-++.+...+.+....+-.||.+++.....-+.......++|..++.-++=.-.|=.
T Consensus 91 -----e~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~ 165 (546)
T KOG0977|consen 91 -----EAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIK 165 (546)
T ss_pred -----hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHH
Confidence 223344555555665666666777777777777777777777777777777777777777777666654443333
Q ss_pred HHHHHHHhHHHHHhhhhHHHHHhhcCChhHH---HHHHHHHHHHHHHHHHH---------------------------HH
Q 006822 306 ELKSKLGDFIEQLKAKDMVLQKLESTKNSEV---LTMKEKVKSLEEQLKES---------------------------EI 355 (630)
Q Consensus 306 el~sKL~~~~eqL~~k~~~lekl~~s~esEv---~sLqkKvksLE~qLdes---------------------------~e 355 (630)
.+.+.++....+...--..|..++.-.+.|. ..++.+++.|-.+|+-. .-
T Consensus 166 ~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~ 245 (546)
T KOG0977|consen 166 ALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKN 245 (546)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHH
Confidence 3333333222222222233333332222222 23333333333333222 22
Q ss_pred HHHHhHhhhhhh-HH-------HH-HhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhh
Q 006822 356 RLQNANACFQTS-QE-------QL-NEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKK 426 (630)
Q Consensus 356 QL~~A~aklEes-E~-------EV-aaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK 426 (630)
+|+.|-..+-+- +. ++ ..+.++|+.++....++=.-...+...+..+--....|...+..|++++..-+.+
T Consensus 246 eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~ 325 (546)
T KOG0977|consen 246 ELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKR 325 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHH
Confidence 222221111110 11 11 1455566666654445445555566666666666677777777777776644555
Q ss_pred hhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHH
Q 006822 427 VGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSF 506 (630)
Q Consensus 427 ~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~ 506 (630)
++-|+.||.+-. .+--..+.++.+-|..+...|...-.. .-.|=+++.-|.-||+.
T Consensus 326 I~dL~~ql~e~~-----------------r~~e~~L~~kd~~i~~mReec~~l~~E-------lq~LlD~ki~Ld~EI~~ 381 (546)
T KOG0977|consen 326 IEDLEYQLDEDQ-----------------RSFEQALNDKDAEIAKMREECQQLSVE-------LQKLLDTKISLDAEIAA 381 (546)
T ss_pred HHHHHhhhhhhh-----------------hhhhhhhhhHHHHHHHHHHHHHHHHHH-------HHHhhchHhHHHhHHHH
Confidence 555555554422 112235666666666555554433322 44566777788889999
Q ss_pred HHhhHH
Q 006822 507 MRDKIK 512 (630)
Q Consensus 507 l~~~lk 512 (630)
||.=|.
T Consensus 382 YRkLLe 387 (546)
T KOG0977|consen 382 YRKLLE 387 (546)
T ss_pred HHHHhc
Confidence 875444
No 64
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.36 E-value=3.1 Score=49.69 Aligned_cols=106 Identities=17% Similarity=0.108 Sum_probs=63.6
Q ss_pred hhhhHHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006822 280 MGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQN 359 (630)
Q Consensus 280 ~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~ 359 (630)
.-+++.....++.++++++|.+.+=+ .-++++.+...+++-.++.=++++.....-..++.+|++-...||..
T Consensus 645 ~~~~~k~~e~l~~~~~kyK~lI~~lD-------~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~ 717 (970)
T KOG0946|consen 645 TQLAEKYHEELDDIQQKYKGLIRELD-------YQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGI 717 (970)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34677888899999999998776533 33444444444444433333567777777777778888877777764
Q ss_pred hHhhhhhh----------HHHHHhHHHHHHHHHHHHHhhhhhH
Q 006822 360 ANACFQTS----------QEQLNEMDNFIESLKESLYGAESRA 392 (630)
Q Consensus 360 A~aklEes----------E~EVaaLerrIelLKEel~rAEsRa 392 (630)
+..+.... ..+++++.-.++.++-+...+...+
T Consensus 718 ~~~~~~~~~q~~e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L 760 (970)
T KOG0946|consen 718 ISSKQRDLLQGAEASKTQNEELNAALSENKKLENDQELLTKEL 760 (970)
T ss_pred cccchhhHHhHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44333221 3355555555555554444444444
No 65
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=95.19 E-value=7.6 Score=44.32 Aligned_cols=150 Identities=21% Similarity=0.261 Sum_probs=86.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHH
Q 006822 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEE 412 (630)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELere 412 (630)
++++..+++++...-..|+.. .+..|...++....+|..|=..++-=-..-..-+.........+..+.+.|.++..+
T Consensus 251 ~~~i~~i~~~l~~~~~~L~~l--~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e 328 (560)
T PF06160_consen 251 EEEIEQIEEQLEEALALLKNL--ELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEE 328 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555544444444322 233343343433444443333333323333345667777788888999999999999
Q ss_pred hhhhhcCC---CCchhhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhh
Q 006822 413 INFLKGNN---DSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQ 489 (630)
Q Consensus 413 lk~Lesrs---~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsK 489 (630)
+..+..+= ..+.++...+++|++....+.........+... -|+.+.....-+. ..+..-+..-...-..
T Consensus 329 ~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~----~yS~i~~~l~~~~---~~l~~ie~~q~~~~~~ 401 (560)
T PF06160_consen 329 LERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQV----PYSEIQEELEEIE---EQLEEIEEEQEEINES 401 (560)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc----CHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 99988872 224678889999998888777766655555544 6777665554333 4444333333333333
Q ss_pred hh
Q 006822 490 CI 491 (630)
Q Consensus 490 c~ 491 (630)
+.
T Consensus 402 l~ 403 (560)
T PF06160_consen 402 LQ 403 (560)
T ss_pred HH
Confidence 44
No 66
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=94.68 E-value=7.6 Score=41.80 Aligned_cols=179 Identities=23% Similarity=0.298 Sum_probs=109.4
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHH------------------HhhhhhcCCC-------CchhhhhhHHHHH
Q 006822 380 SLKESLYGAESRAESAEEKVTQLTDTNLELSE------------------EINFLKGNND-------SNTKKVGILENQL 434 (630)
Q Consensus 380 lLKEel~rAEsRa~tAesKle~LseTNdELer------------------elk~Lesrs~-------~deEK~~~LE~QL 434 (630)
-|+-+|.---+|+++|...+..-..+--.++. .++.|+..+. ..+-|.++|+..|
T Consensus 88 rLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~el 167 (305)
T PF14915_consen 88 RLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIEL 167 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566667788887777653333222221 1222222211 1245677777777
Q ss_pred HHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHH
Q 006822 435 RDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKIL 514 (630)
Q Consensus 435 KEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksL 514 (630)
....-.|..-.-+.|..++..+-...-++.|+.+--.=++|+.+.-.+-+++|.++.=|--.|+ -++..|.+.
T Consensus 168 h~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~-------LLrQQLddA 240 (305)
T PF14915_consen 168 HHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENM-------LLRQQLDDA 240 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 7777666666566666665444455666777766666669999999999999999984444555 444333322
Q ss_pred HHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC
Q 006822 515 ESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (630)
Q Consensus 515 E~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQl~s~keenK~L~ekld~tk 575 (630)
... -..|+.++-+|..+ +-++|.+|..+.+ .|...+.++||.|..+|...+
T Consensus 241 ~~K----~~~kek~ViniQ~~---f~d~~~~L~ae~e---kq~lllEErNKeL~ne~n~Lk 291 (305)
T PF14915_consen 241 HNK----ADNKEKTVINIQDQ---FQDIVKKLQAESE---KQVLLLEERNKELINECNHLK 291 (305)
T ss_pred HHH----HHHHHHHHhhHHHH---HHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHH
Confidence 111 11244455555544 5678888877764 477888889999988888764
No 67
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=94.41 E-value=4.1 Score=43.49 Aligned_cols=96 Identities=23% Similarity=0.291 Sum_probs=82.6
Q ss_pred HHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhh---HHHHHHhHHHHHHHHHH
Q 006822 469 IEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAAS---AKEVNHRTKLMMEMVMQ 545 (630)
Q Consensus 469 IEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~ke~t---lKeae~Rak~aE~lV~K 545 (630)
|+=++.++..++...+.++.+.. +...+|.-+..++..|+...+.+...+... ++....|-.-+.+++.-
T Consensus 216 V~P~~~~l~~a~~~l~~~~~~L~-------~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~ 288 (344)
T PF12777_consen 216 VEPKRQKLEEAEAELEEAEEQLA-------EKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISG 288 (344)
T ss_dssp CCHHHHHHHHCCCCHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhh
Confidence 44566788888888888888888 889999999999999999999888877776 67778899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHH
Q 006822 546 LATQRELIQKQVYSLTSENKLLVEKL 571 (630)
Q Consensus 546 L~~ErdrLedQl~s~keenK~L~ekl 571 (630)
|..|+.|=..++..+......|...+
T Consensus 289 L~~E~~RW~~~~~~l~~~~~~l~GD~ 314 (344)
T PF12777_consen 289 LSGEKERWSEQIEELEEQLKNLVGDS 314 (344)
T ss_dssp CHHHHHCCHCHHHHHHHHHHHHHHHH
T ss_pred hcchhhhHHHHHHHHHHHhcccHHHH
Confidence 99999999999999988888876543
No 68
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=94.33 E-value=13 Score=42.93 Aligned_cols=40 Identities=18% Similarity=0.307 Sum_probs=24.1
Q ss_pred HHHHhHhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhhc
Q 006822 142 IMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYF 181 (630)
Q Consensus 142 ~~~~~~~kL~~~~~sLkq~qe~~~ei~~qsa~f~r~~~~~ 181 (630)
.+++++.++.+....+......+..++.+....+.-+..+
T Consensus 210 ~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l 249 (650)
T TIGR03185 210 EIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESL 249 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666666555555443
No 69
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=94.28 E-value=12 Score=42.58 Aligned_cols=289 Identities=16% Similarity=0.177 Sum_probs=140.6
Q ss_pred HHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhh-hhHHHHHhhcCChhHHHHHHHHHHHH
Q 006822 268 RFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKA-KDMVLQKLESTKNSEVLTMKEKVKSL 346 (630)
Q Consensus 268 r~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~-k~~~lekl~~s~esEv~sLqkKvksL 346 (630)
||+.|-+..--+......+-.+++.+.-.|+.....|.+-+.....+.+.-.. |...+.+=++- -+=+..|.+++..+
T Consensus 99 ~f~~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~-G~a~~~le~~l~~~ 177 (569)
T PRK04778 99 RFRKAKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSF-GPALDELEKQLENL 177 (569)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-cchHHHHHHHHHHH
Confidence 66666666666666666666666666666666555555555544444444433 22222222221 23445677778888
Q ss_pred HHHHHHHHHHH-----HHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCC
Q 006822 347 EEQLKESEIRL-----QNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNND 421 (630)
Q Consensus 347 E~qLdes~eQL-----~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~ 421 (630)
|.+|..+..-. ..|..-+.....++..|+..++.+-.=+...+.-. =.--++|..+..-+...+.
T Consensus 178 e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~----------P~ql~el~~gy~~m~~~gy 247 (569)
T PRK04778 178 EEEFSQFVELTESGDYVEAREILDQLEEELAALEQIMEEIPELLKELQTEL----------PDQLQELKAGYRELVEEGY 247 (569)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------hHHHHHHHHHHHHHHHcCC
Confidence 88887776632 23444444445566666666666555444433322 1222344444444444433
Q ss_pred C-----chhhhhhHHHHHHHHH-----HHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhh
Q 006822 422 S-----NTKKVGILENQLRDLE-----IQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCI 491 (630)
Q Consensus 422 ~-----deEK~~~LE~QLKEa~-----~QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~ 491 (630)
. -+.++..+..++.++. ..|..|.........+-.-+|+.+.+--.... .++.........+.
T Consensus 248 ~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~-------~vek~~~~l~~~l~ 320 (569)
T PRK04778 248 HLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARK-------YVEKNSDTLPDFLE 320 (569)
T ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhHHHHHHHH
Confidence 2 1455666666666632 23344444444444434445654443332221 12222222333333
Q ss_pred hhccchhhHHHHHHHHHhh----------HHHHHHHHHHHhHHHHhh-----------------HHHHHHhHHHHHHHHH
Q 006822 492 VLSEDNFELKNKQSFMRDK----------IKILESSLNRANIEKAAS-----------------AKEVNHRTKLMMEMVM 544 (630)
Q Consensus 492 ~Lse~N~ELeEEL~~l~~~----------lksLE~sl~kA~q~ke~t-----------------lKeae~Rak~aE~lV~ 544 (630)
=+.+.|.+|..|+..|..+ +..++..++....+-... ++++..+-+.++.-..
T Consensus 321 ~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ 400 (569)
T PRK04778 321 HAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQE 400 (569)
T ss_pred HHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455677777766666 555555555544443322 3334444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHhhc
Q 006822 545 QLATQRELIQKQVYSLTSENKLLVEKLQYS 574 (630)
Q Consensus 545 KL~~ErdrLedQl~s~keenK~L~ekld~t 574 (630)
++...+..|.......+.+...+..++...
T Consensus 401 ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~i 430 (569)
T PRK04778 401 KLSEMLQGLRKDELEAREKLERYRNKLHEI 430 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444433
No 70
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=94.19 E-value=16 Score=43.39 Aligned_cols=85 Identities=25% Similarity=0.293 Sum_probs=58.0
Q ss_pred HHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh----hhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHh
Q 006822 369 EQLNEMDNFIESLKESLYGAESRAESAEEKVTQLT----DTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQA 444 (630)
Q Consensus 369 ~EVaaLerrIelLKEel~rAEsRa~tAesKle~Ls----eTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA 444 (630)
..|..++..|..|++-+.--..|+..-+..+..++ +-+.+|++..++-.+. |-+|.+.+
T Consensus 349 ~~v~e~qtti~~L~~lL~~Eqqr~~~~ed~lk~l~~eLqkks~eleEmtk~k~~k-----------e~eleeL~------ 411 (786)
T PF05483_consen 349 FVVTELQTTICNLKELLTTEQQRLKKNEDQLKILTMELQKKSSELEEMTKQKNNK-----------EVELEELK------ 411 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHHHhhhh-----------HHHHHHHH------
Confidence 36779999999999999988999998888876554 4555665555533332 44565554
Q ss_pred HhhhHhHHHHHhhhHHHHHhHHHHHHHHhhh
Q 006822 445 KVSSEASQEQQSMLYSAIWDMETLIEDLKSK 475 (630)
Q Consensus 445 ~asaEas~eqQ~mkysei~dme~vIEdLk~K 475 (630)
...+.... ++++-.+.+.+.|.|++.
T Consensus 412 -~~L~e~qk----ll~ekk~~eki~E~lq~~ 437 (786)
T PF05483_consen 412 -KILAEKQK----LLDEKKQFEKIAEELQGT 437 (786)
T ss_pred -HHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 33333333 677888888888877765
No 71
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=94.08 E-value=8.2 Score=39.80 Aligned_cols=56 Identities=16% Similarity=0.112 Sum_probs=30.8
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 006822 499 ELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQ 554 (630)
Q Consensus 499 ELeEEL~~l~~~lksLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLe 554 (630)
.|.-+|..+++....|+..+......=..-..+....-.-.+.-+.++..++.+..
T Consensus 227 ~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~ 282 (312)
T PF00038_consen 227 SLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQL 282 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHH
Confidence 66666667777777777666665555444444444444444444444444444433
No 72
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=94.07 E-value=6.6 Score=43.17 Aligned_cols=35 Identities=9% Similarity=0.098 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCC
Q 006822 543 VMQLATQRELIQKQVYSLTSENKLLVEKLQYSGKS 577 (630)
Q Consensus 543 V~KL~~ErdrLedQl~s~keenK~L~ekld~tkk~ 577 (630)
....+.+..+|+-+.-....-|..+...+++++-.
T Consensus 350 ~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~~~ 384 (498)
T TIGR03007 350 IPEVEAELTQLNRDYEVNKSNYEQLLTRRESAEVS 384 (498)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566778888888888888888888888887654
No 73
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=94.04 E-value=0.91 Score=45.86 Aligned_cols=115 Identities=19% Similarity=0.266 Sum_probs=81.8
Q ss_pred HHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhh------HHHHHHh
Q 006822 462 IWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAAS------AKEVNHR 535 (630)
Q Consensus 462 i~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~ke~t------lKeae~R 535 (630)
.+|+..-|+||..--.|-...--..-..+....+.|..|-+|+.-++..+++++-.++.|.-.+++- ++.++--
T Consensus 3 t~dL~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~ 82 (193)
T PF14662_consen 3 TSDLLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEE 82 (193)
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777766555555544556666778889999999999999999999998888886555544 5555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCC
Q 006822 536 TKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSGK 576 (630)
Q Consensus 536 ak~aE~lV~KL~~ErdrLedQl~s~keenK~L~ekld~tkk 576 (630)
..-+-.--.++.+|-..|..+|.++-++|..+....+.+++
T Consensus 83 ~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~ 123 (193)
T PF14662_consen 83 NRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKK 123 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHH
Confidence 44444455566667777777777777777777666666654
No 74
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=94.00 E-value=14 Score=44.18 Aligned_cols=28 Identities=14% Similarity=0.229 Sum_probs=19.9
Q ss_pred hhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHH
Q 006822 482 KTESVEEQCIVLSEDNFELKNKQSFMRDKIKILES 516 (630)
Q Consensus 482 RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~ 516 (630)
..-.|-.|.+ |=-+=|..||..||+|-.
T Consensus 734 EiaaAA~KLA-------ECQeTI~sLGkQLksLa~ 761 (769)
T PF05911_consen 734 EIAAAAEKLA-------ECQETIASLGKQLKSLAT 761 (769)
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHhcCC
Confidence 3345666677 777778888988888853
No 75
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.94 E-value=16 Score=42.47 Aligned_cols=87 Identities=15% Similarity=0.205 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhh-hcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhcCCh
Q 006822 255 AFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQF-NLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKN 333 (630)
Q Consensus 255 ~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf-~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s~e 333 (630)
++||. -+..-|.+|+.++--..-+....+.-+.++-...+ .+ ..++......++++. ++++..+
T Consensus 195 k~f~d-y~~~~Y~~fl~g~d~~~~~~~Elk~~l~~~~~~i~~~i-------e~l~~~n~~l~e~i~----e~ek~~~--- 259 (581)
T KOG0995|consen 195 KLFFD-YTIRSYTSFLKGEDNSSELEDELKHRLEKYFTSIANEI-------EDLKKTNRELEEMIN----EREKDPG--- 259 (581)
T ss_pred HHHHH-HHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH----HHhcCcc---
Confidence 45554 45566777776443366666666665555554333 23 234555555555555 2233222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 006822 334 SEVLTMKEKVKSLEEQLKESEIRL 357 (630)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL 357 (630)
=..+|.+|...|.+++..++.-.
T Consensus 260 -~~eslre~~~~L~~D~nK~~~y~ 282 (581)
T KOG0995|consen 260 -KEESLREKKARLQDDVNKFQAYV 282 (581)
T ss_pred -hHHHHHHHHHHHHhHHHHHHHHH
Confidence 23356666666666666555443
No 76
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=93.80 E-value=4.9 Score=38.78 Aligned_cols=93 Identities=19% Similarity=0.239 Sum_probs=77.7
Q ss_pred HHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhh
Q 006822 326 QKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDT 405 (630)
Q Consensus 326 ekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseT 405 (630)
.+|..+ .++.-+|.++|-+||.+|..++..+..+....|.+..++.+|+..|..+-..+.+.+.-+.+..+.-..+.+.
T Consensus 10 ~kLK~~-~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~ 88 (140)
T PF10473_consen 10 EKLKES-ESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKE 88 (140)
T ss_pred HHHHHH-HHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 5778899999999999999999999999999888899999988888888888888888888888877777777
Q ss_pred hHHHHHHhhhhhcC
Q 006822 406 NLELSEEINFLKGN 419 (630)
Q Consensus 406 NdELerelk~Lesr 419 (630)
-.+....+..|+++
T Consensus 89 lq~~q~kv~eLE~~ 102 (140)
T PF10473_consen 89 LQKKQEKVSELESL 102 (140)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777777776
No 77
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=93.69 E-value=2.7 Score=43.75 Aligned_cols=62 Identities=21% Similarity=0.437 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 006822 338 TMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKV 399 (630)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKl 399 (630)
.+..+.+...+.|+.....+..++..+++.+.++.+|++.+-.++.++..+..|...++.++
T Consensus 21 rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 21 RLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555555555555666666666666666666666665555
No 78
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=93.69 E-value=0.019 Score=66.21 Aligned_cols=141 Identities=21% Similarity=0.261 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhh---hhHHHHHHhhhhhcCCCCch---hhhhhHHHHHHHHHHHHHH
Q 006822 370 QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTD---TNLELSEEINFLKGNNDSNT---KKVGILENQLRDLEIQLQQ 443 (630)
Q Consensus 370 EVaaLerrIelLKEel~rAEsRa~tAesKle~Lse---TNdELerelk~Lesrs~~de---EK~~~LE~QLKEa~~QLqh 443 (630)
.+..+..-++.||+++..-+.|+..++.-...+.. -+..|+.++..-.+-..... ..-..+=..|... |..+
T Consensus 275 ~Lr~~~~n~elLeEe~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el~sW~sl~~~~~~~~~sPe~l~~~l~~l--q~~~ 352 (722)
T PF05557_consen 275 HLRQSQENVELLEEEKRSLQRKLERLEELEEELAELQLENEKLEDELNSWESLLQDIGLEFDSPEDLARALVQL--QQEN 352 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH--HHHH
Confidence 44455566677777777777776666644444333 35566665544332111000 0111122222211 1112
Q ss_pred hHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHH-------HHHHHHHhhHHHHHH
Q 006822 444 AKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELK-------NKQSFMRDKIKILES 516 (630)
Q Consensus 444 A~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELe-------EEL~~l~~~lksLE~ 516 (630)
+.. ..+.+-.-..+..+...|.+|..++..+...++.++.+...+...+..|+ .|..+||.-|++.+.
T Consensus 353 ~~L-----~ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~ 427 (722)
T PF05557_consen 353 ASL-----TEKLGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDK 427 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHH-----HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 211 11222345667777777777777777777777777777666666665655 455666666666554
Q ss_pred H
Q 006822 517 S 517 (630)
Q Consensus 517 s 517 (630)
-
T Consensus 428 e 428 (722)
T PF05557_consen 428 E 428 (722)
T ss_dssp -
T ss_pred h
Confidence 3
No 79
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=93.49 E-value=10 Score=38.78 Aligned_cols=193 Identities=16% Similarity=0.160 Sum_probs=106.0
Q ss_pred HhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhHhhhHhH
Q 006822 372 NEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEAS 451 (630)
Q Consensus 372 aaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas 451 (630)
.+|...|..++.++-.+|.+......+|..+...|.+...=+.-++..-. .-+...+++-..++..++ .+....
T Consensus 5 ~d~d~~~~~~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~---~~i~e~~~~~~~~~~~i~---~~~~er 78 (207)
T PF05010_consen 5 KDLDAAIKKVQEEVAEKEEEEQELKKKYEELHKENQEMRKIMEEYEKTIA---QMIEEKQKQKELSEAEIQ---KLLKER 78 (207)
T ss_pred HhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHhhHHhHHHHHH---HHHhhH
Confidence 35666777777777777777777777777777777776665554444311 111111111111111111 011111
Q ss_pred HHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHH----HHHHHHHhHHHHh
Q 006822 452 QEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKIL----ESSLNRANIEKAA 527 (630)
Q Consensus 452 ~eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksL----E~sl~kA~q~ke~ 527 (630)
+. .|..+.-++.-.-||-.++++...-++.+-..=-.|-.+--+...-|.-.+.|...| +.+++.||..=+.
T Consensus 79 dq----~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~ 154 (207)
T PF05010_consen 79 DQ----AYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQ 154 (207)
T ss_pred HH----HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 344444444444444444444443333322221111122234444444444444444 4566777777777
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhc
Q 006822 528 SAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYS 574 (630)
Q Consensus 528 tlKeae~Rak~aE~lV~KL~~ErdrLedQl~s~keenK~L~ekld~t 574 (630)
.-+..........-.+.+.+..+.-|+.+|-.-+.+|.-|..=||..
T Consensus 155 v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeL 201 (207)
T PF05010_consen 155 VRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDEL 201 (207)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777788888888888888888888888887777753
No 80
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=93.38 E-value=12 Score=39.20 Aligned_cols=26 Identities=15% Similarity=0.290 Sum_probs=13.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHH
Q 006822 532 VNHRTKLMMEMVMQLATQRELIQKQV 557 (630)
Q Consensus 532 ae~Rak~aE~lV~KL~~ErdrLedQl 557 (630)
++.....+.+-+..+..+++.|...+
T Consensus 147 ~e~e~~~i~e~~~~~~~~~~~L~~~l 172 (239)
T COG1579 147 LEEEVAEIREEGQELSSKREELKEKL 172 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444445555555555665555544
No 81
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=93.23 E-value=21 Score=41.64 Aligned_cols=76 Identities=17% Similarity=0.173 Sum_probs=48.0
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHH----hHHHHhh---HHH-----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 006822 499 ELKNKQSFMRDKIKILESSLNRA----NIEKAAS---AKE-----VNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKL 566 (630)
Q Consensus 499 ELeEEL~~l~~~lksLE~sl~kA----~q~ke~t---lKe-----ae~Rak~aE~lV~KL~~ErdrLedQl~s~keenK~ 566 (630)
..-++++.++..++.++.-+..- .+-+..| =|+ --.|.--|-..|.|-..+++++-.+.-.+.++.+.
T Consensus 444 ~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~ 523 (594)
T PF05667_consen 444 QKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINS 523 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777776654433322 2222222 111 12233344556677788888999999999999999
Q ss_pred HHHHHhhc
Q 006822 567 LVEKLQYS 574 (630)
Q Consensus 567 L~ekld~t 574 (630)
+..+|+.|
T Consensus 524 l~gkL~Rt 531 (594)
T PF05667_consen 524 LTGKLDRT 531 (594)
T ss_pred HHHHHHhH
Confidence 99999977
No 82
>PRK09039 hypothetical protein; Validated
Probab=93.22 E-value=14 Score=39.87 Aligned_cols=33 Identities=12% Similarity=0.177 Sum_probs=17.2
Q ss_pred HHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhh
Q 006822 459 YSAIWDMETLIEDLKSKVSKAESKTESVEEQCI 491 (630)
Q Consensus 459 ysei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~ 491 (630)
+..|.++-.-|+-|+..+...+...+.+|.+..
T Consensus 136 ~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~ 168 (343)
T PRK09039 136 LAQVELLNQQIAALRRQLAALEAALDASEKRDR 168 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555566566665555555444444443
No 83
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=93.16 E-value=22 Score=41.70 Aligned_cols=186 Identities=17% Similarity=0.229 Sum_probs=110.6
Q ss_pred cchHHHHHHHHHHHHhhhhhhhhhHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhh------
Q 006822 208 KNADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMG------ 281 (630)
Q Consensus 208 qt~eqqR~iLrMLekSla~EldLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g------ 281 (630)
++++-.|..-+=|=|+--+|+|. .+...++-|-+-..||+++.+|.---=+|-+
T Consensus 55 ~~pe~k~k~~~~llK~yQ~EiD~--------------------LtkRsk~aE~afl~vye~L~eaPDP~pll~sa~~~l~ 114 (629)
T KOG0963|consen 55 NTPEDKLKMVNPLLKSYQSEIDN--------------------LTKRSKFAEAAFLDVYEKLIEAPDPVPLLASAAELLN 114 (629)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHhhHHHHHHHHHHHhhCCCCchHHHHHHHHhh
Confidence 35666677776666777677664 3556778888889999999999765444433
Q ss_pred -hhH------HHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhh------hHHHH---HhhcC---C----hhHHHH
Q 006822 282 -ISK------EMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAK------DMVLQ---KLEST---K----NSEVLT 338 (630)
Q Consensus 282 -~sk------el~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k------~~~le---kl~~s---~----esEv~s 338 (630)
..+ .+..+|......|.+..-.+..++ +|+...-+++++ ..+.. ++... + -.+-..
T Consensus 115 k~~~~~~e~~~lk~~lee~~~el~~~k~qq~~v~-~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~ 193 (629)
T KOG0963|consen 115 KQQKASEENEELKEELEEVNNELADLKTQQVTVR-NLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQN 193 (629)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 333333333333222221111111 111111111110 00000 00000 0 244556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhhh----HHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhh
Q 006822 339 MKEKVKSLEEQLKESEIRLQNANACFQTS----QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEIN 414 (630)
Q Consensus 339 LqkKvksLE~qLdes~eQL~~A~aklEes----E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk 414 (630)
+++++..+|...+..+..+..+..++... ..++++..-.|.++=.++.+|..|+-.++..|+.|.+....-+...+
T Consensus 194 ~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~ 273 (629)
T KOG0963|consen 194 LQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKK 273 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 77777777777777777777666666553 55788888899999999999999999999999988877666665544
No 84
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.09 E-value=1 Score=52.90 Aligned_cols=140 Identities=20% Similarity=0.261 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhh
Q 006822 431 ENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDK 510 (630)
Q Consensus 431 E~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~ 510 (630)
+.|+++.. +++.-+....+..+....+|+.++++-..+. .. ++.=+..+..+.-.||+...+.-+||.-++.+
T Consensus 575 e~Ql~~L~-~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~---~R---~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~ 647 (717)
T PF10168_consen 575 EQQLKELQ-ELQEERKSLRESAEKLAERYEEAKDKQEKLM---KR---VDRVLQLLNSQLPVLSEAEREFKKELERMKDQ 647 (717)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH---HHHHHHHHhccCCCCCHHHHHHHHHHHHHHHH
Confidence 34555442 3333333333333333336666666654444 22 22222333445566888888999999999999
Q ss_pred HHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCC
Q 006822 511 IKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSGKS 577 (630)
Q Consensus 511 lksLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQl~s~keenK~L~ekld~tkk~ 577 (630)
++.|.++++++..+...--..++.++..-...+.==....+++.+-|....++.+.+..++++.++.
T Consensus 648 l~~l~~si~~lk~k~~~Q~~~i~~~~~~~~~s~~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~~ 714 (717)
T PF10168_consen 648 LQDLKASIEQLKKKLDYQQRQIESQKSPKKKSIVLSESQKRTIKEILKQQGEEIDELVKQIKNIKKI 714 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999877666543333333332222222223344455555555555555555555555444
No 85
>PRK09039 hypothetical protein; Validated
Probab=93.07 E-value=5.7 Score=42.81 Aligned_cols=12 Identities=25% Similarity=0.268 Sum_probs=7.8
Q ss_pred ceeccCCCCCCc
Q 006822 580 ATMYNAGDTDDK 591 (630)
Q Consensus 580 ~~~~~~~~~~~~ 591 (630)
..+...|.||..
T Consensus 263 ~~I~I~GHTD~~ 274 (343)
T PRK09039 263 WVLRVDGHTDNV 274 (343)
T ss_pred eeEEEEEecCCC
Confidence 345667777765
No 86
>PRK11281 hypothetical protein; Provisional
Probab=93.07 E-value=6.4 Score=48.70 Aligned_cols=32 Identities=19% Similarity=0.132 Sum_probs=23.8
Q ss_pred hhhccchhhHHHHHHHHHhhHHHHHHHHHHHh
Q 006822 491 IVLSEDNFELKNKQSFMRDKIKILESSLNRAN 522 (630)
Q Consensus 491 ~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~ 522 (630)
.-+.+.|.+|.++|-....++..+-....++.
T Consensus 281 ~~~~~~N~~Ls~~L~~~t~~~~~l~~~~~~~~ 312 (1113)
T PRK11281 281 AQELEINLQLSQRLLKATEKLNTLTQQNLRVK 312 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33557899999999999999888765554443
No 87
>PLN02939 transferase, transferring glycosyl groups
Probab=92.91 E-value=20 Score=44.03 Aligned_cols=198 Identities=22% Similarity=0.296 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH-hhh--hhh-------------------------HHHHHhHHHHHHHHHHHHHhh
Q 006822 337 LTMKEKVKSLEEQLKESEIRLQNAN-ACF--QTS-------------------------QEQLNEMDNFIESLKESLYGA 388 (630)
Q Consensus 337 ~sLqkKvksLE~qLdes~eQL~~A~-akl--Ees-------------------------E~EVaaLerrIelLKEel~rA 388 (630)
-.||.|+..||-.|.+++.++.-+. ++. +-. -.++..+...+..||+++.--
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (977)
T PLN02939 166 EALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQFL 245 (977)
T ss_pred HHHHhhHHHHHHHhhhhhhhhhhhhhccccchhhHHHHHHHhhhhhccccccccccccHHHHHHHHHHHhHHHHHHHHHH
Confidence 3788899999988888877765332 111 000 114444444455555544321
Q ss_pred hhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhHhhh-HhHHHHHhhhHHHHHhHHH
Q 006822 389 ESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSS-EASQEQQSMLYSAIWDMET 467 (630)
Q Consensus 389 EsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asa-Eas~eqQ~mkysei~dme~ 467 (630)
. ......++..+.---+++++..|.+ .|++.+..+--|.+-+ +-+-. +|+..|.+
T Consensus 246 ~----~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-- 301 (977)
T PLN02939 246 K----AELIEVAETEERVFKLEKERSLLDA--------------SLRELESKFIVAQEDVSKLSPL----QYDCWWEK-- 301 (977)
T ss_pred H----HHHHHHHhhhHHHHHHHHHHHHHHH--------------HHHHHHHHHHhhhhhhhhccch----hHHHHHHH--
Confidence 1 1122233333444445555555554 3444432221111111 11122 35544544
Q ss_pred HHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHH
Q 006822 468 LIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLA 547 (630)
Q Consensus 468 vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~ 547 (630)
+|-|+.=+.+|-..+| +.+++...|- -++.++..||++|..|+..|-++ +.++-+-+|+.
T Consensus 302 -~~~~~~~~~~~~~~~~----~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~ 361 (977)
T PLN02939 302 -VENLQDLLDRATNQVE----KAALVLDQNQ-------DLRDKVDKLEASLKEANVSKFSS--------YKVELLQQKLK 361 (977)
T ss_pred -HHHHHHHHHHHHHHHH----HHHHHhccch-------HHHHHHHHHHHHHHHhhHhhhhH--------HHHHHHHHHHH
Confidence 3334444445554433 3455566676 56789999999999999988754 23333333433
Q ss_pred HHHHH-------HHHHHHHHHHhhhHHHHHHhhcCCCC
Q 006822 548 TQREL-------IQKQVYSLTSENKLLVEKLQYSGKSS 578 (630)
Q Consensus 548 ~Erdr-------LedQl~s~keenK~L~ekld~tkk~~ 578 (630)
...+| ++.++..-....+...+++++.+.+.
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (977)
T PLN02939 362 LLEERLQASDHEIHSYIQLYQESIKEFQDTLSKLKEES 399 (977)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33333 44444444555555555565554443
No 88
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=92.76 E-value=32 Score=42.62 Aligned_cols=220 Identities=19% Similarity=0.245 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHh-
Q 006822 335 EVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEI- 413 (630)
Q Consensus 335 Ev~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerel- 413 (630)
++.+-+-|+..||.++.-+..++.+.+-+++..+.++.-++..|.....+++.-+-++++.+.....|.+--.+.+..+
T Consensus 677 e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if 756 (1141)
T KOG0018|consen 677 EVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDRIF 756 (1141)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999999988887776666666666655555555444444444433333333322222210
Q ss_pred -hhhhcCCCC----c--------hhhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhh
Q 006822 414 -NFLKGNNDS----N--------TKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAE 480 (630)
Q Consensus 414 -k~Lesrs~~----d--------eEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE 480 (630)
.|-..-+.. + ..|.-.+++|+--++.||+--+ |+..-..+.+++.-|+++...+.--+
T Consensus 757 ~~f~~~igv~ir~Yee~~~~~~~a~k~~ef~~q~~~l~~~l~fe~---------~~d~~~~ve~~~~~v~~~~~~~~~~~ 827 (1141)
T KOG0018|consen 757 KGFCRRIGVRIREYEERELQQEFAKKRLEFENQKAKLENQLDFEK---------QKDTQRRVERWERSVEDLEKEIEGLK 827 (1141)
T ss_pred HHhhhhcCeeeehHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhee---------cccHHHHHHHHHHHHHHHHHhHHhhH
Confidence 111111110 0 1223333444433333333322 33333445555555555555555444
Q ss_pred hhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006822 481 SKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSL 560 (630)
Q Consensus 481 ~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQl~s~ 560 (630)
.+-+.++..+. +. +++.- ++ .+....+..-+++...-..-+..-.++|..++..++.+|-..
T Consensus 828 ~~e~~~~k~i~-------e~-~~~e~-k~---------k~~~~~~~~e~~e~~k~~~~~~~~~tkl~~~i~~~es~ie~~ 889 (1141)
T KOG0018|consen 828 KDEEAAEKIIA-------EI-EELEK-KN---------KSKFEKKEDEINEVKKILRRLVKELTKLDKEITSIESKIERK 889 (1141)
T ss_pred HHHHHHHHHHh-------hH-HHHHH-HH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHH
Confidence 44444555455 33 22222 11 222222222244444444555566678899999999999999
Q ss_pred HHhhhHHHHHHhhcCCCCcce
Q 006822 561 TSENKLLVEKLQYSGKSSSAT 581 (630)
Q Consensus 561 keenK~L~ekld~tkk~~~~~ 581 (630)
..+...|-..|+--....|..
T Consensus 890 ~~er~~lL~~ckl~~I~vPl~ 910 (1141)
T KOG0018|consen 890 ESERHNLLSKCKLEDIEVPLS 910 (1141)
T ss_pred HHHHHHHHHHhhhcccccccc
Confidence 988888877777666666654
No 89
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=92.45 E-value=18 Score=39.04 Aligned_cols=149 Identities=21% Similarity=0.317 Sum_probs=97.6
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhchhH----HHHHHHhHHHHHh
Q 006822 244 LKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESE----LKSKLGDFIEQLK 319 (630)
Q Consensus 244 Lk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REse----l~sKL~~~~eqL~ 319 (630)
|.-||-.-.|-+..||-.++++.-|+..|-+=. ++=|+..-||.-+.+|+.| |..|+..-+-+|.
T Consensus 75 L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~-----------dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lk 143 (305)
T PF14915_consen 75 LNSKLEKEKQNKERLETEIESYRSRLAAAIQDH-----------DQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLK 143 (305)
T ss_pred HhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhH-----------HHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHH
Confidence 444555556778889999999999998875432 3557778888889999988 6666666555555
Q ss_pred hhhHH-HHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHH
Q 006822 320 AKDMV-LQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEK 398 (630)
Q Consensus 320 ~k~~~-lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesK 398 (630)
..... -++|... ++-+.+|..++..+=+.|++--.-|.++.-.+..++.++..|+...+.=+.++.+.-.+-+..+.+
T Consensus 144 d~ne~LsQqLska-esK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eER 222 (305)
T PF14915_consen 144 DNNEILSQQLSKA-ESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEER 222 (305)
T ss_pred HHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 43222 2344333 455555555555555555555555556666665567777777777777777777777776666666
Q ss_pred HHHHhh
Q 006822 399 VTQLTD 404 (630)
Q Consensus 399 le~Lse 404 (630)
+.++--
T Consensus 223 L~Qlqs 228 (305)
T PF14915_consen 223 LSQLQS 228 (305)
T ss_pred HHHHHH
Confidence 655543
No 90
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=91.88 E-value=37 Score=41.29 Aligned_cols=277 Identities=17% Similarity=0.197 Sum_probs=133.2
Q ss_pred hhHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhchhHHHH
Q 006822 230 LEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKS 309 (630)
Q Consensus 230 LEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~s 309 (630)
||-.|-+-..-...|..++.-.|-++..|-++...+-.-+-+++--+|-+... +...+-.|+|-..-=--+-.
T Consensus 97 lEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~sr-------lh~le~eLsAk~~eIf~~~~ 169 (1265)
T KOG0976|consen 97 LEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSR-------LHKLEDELSAKAHDIFMIGE 169 (1265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-------HHHHHHHHhhhhHHHHHHHH
Confidence 45555555566677777777777777777777666555555555444433332 22222222222110000111
Q ss_pred HHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh---h---HHHHHhHHHHHHHHHH
Q 006822 310 KLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQT---S---QEQLNEMDNFIESLKE 383 (630)
Q Consensus 310 KL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEe---s---E~EVaaLerrIelLKE 383 (630)
-|...-+.|...+..++.+.+...++...+..|++.+-+.+..-....+.....-+. . +-++++--....-++-
T Consensus 170 ~L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e~~~~nD~~sle~~~~q~~tq~vl~ev~QLss~~q~ltp~rk 249 (1265)
T KOG0976|consen 170 DLHDKNEELNEFNMEFQTKLAEANREKKALEEKLEKFKEDLIEKDQKSLELHKDQENTQKVLKEVMQLSSQKQTLTPLRK 249 (1265)
T ss_pred HHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhh
Confidence 122223333333333332222224444455555554444443322221111000000 0 1122222223333344
Q ss_pred HHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhHhhhHhHH--HHHhhhHHH
Q 006822 384 SLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQ--EQQSMLYSA 461 (630)
Q Consensus 384 el~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~--eqQ~mkyse 461 (630)
..++-+++-. .+.-.|+++.+.+..|+-..+.-.+-...-|-.+|+.+.-|+.-+.+...++ -.|.-+|-.
T Consensus 250 ~~s~i~E~d~-------~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh 322 (1265)
T KOG0976|consen 250 TCSMIEEQDM-------DLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLH 322 (1265)
T ss_pred hhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 4444443333 3444455555544444433322222234445555665555555554444442 346778887
Q ss_pred HHhHH--HHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHh
Q 006822 462 IWDME--TLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAA 527 (630)
Q Consensus 462 i~dme--~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~ke~ 527 (630)
+..|. .-+-|++-.|..|.-.++++-.|.- +|+.+=....-++-++...+.-....+-+
T Consensus 323 ~enmkltrqkadirc~LlEarrk~egfddk~~-------eLEKkrd~al~dvr~i~e~k~nve~elqs 383 (1265)
T KOG0976|consen 323 LENMKLTRQKADIRCALLEARRKAEGFDDKLN-------ELEKKRDMALMDVRSIQEKKENVEEELQS 383 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHH-------HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 77777 4455677777777777777777777 78877777777777665555444433333
No 91
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=91.85 E-value=39 Score=42.19 Aligned_cols=30 Identities=17% Similarity=0.158 Sum_probs=23.0
Q ss_pred hhccchhhHHHHHHHHHhhHHHHHHHHHHH
Q 006822 492 VLSEDNFELKNKQSFMRDKIKILESSLNRA 521 (630)
Q Consensus 492 ~Lse~N~ELeEEL~~l~~~lksLE~sl~kA 521 (630)
-+.+.|.+|.++|.....++..+-....++
T Consensus 262 ~~~~~N~~Ls~~L~~~t~~~n~l~~~~~~~ 291 (1109)
T PRK10929 262 AQFKINRELSQALNQQAQRMDLIASQQRQA 291 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344779999999999999998885554443
No 92
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=91.67 E-value=27 Score=40.73 Aligned_cols=192 Identities=10% Similarity=0.131 Sum_probs=88.1
Q ss_pred hHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhHh
Q 006822 367 SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKV 446 (630)
Q Consensus 367 sE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~a 446 (630)
...-..-|+.++..++.++..||.+++.=..+...... ++. ...+.++..++.||..++.++..|.+
T Consensus 192 ~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~------------~~~-~~~~~~L~~l~~ql~~a~~~~~~a~a 258 (754)
T TIGR01005 192 NTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMG------------NNA-TLATQQLAELNTELSRARANRAAAEG 258 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc------------CCc-cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445567777777777777777766665554433321 121 11235677777777776655555544
Q ss_pred hhHhHHHHHhh--hHHHHHhH-------HHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHH
Q 006822 447 SSEASQEQQSM--LYSAIWDM-------ETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESS 517 (630)
Q Consensus 447 saEas~eqQ~m--kysei~dm-------e~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~s 517 (630)
-......+... ....+..- ..+|-+|+.++...+.+.-.+-.+ .++.+. .+..++..+..|+.+
T Consensus 259 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~L~~~l~~l~~~~~~l~~~---y~~~hP----~v~~l~~qi~~l~~~ 331 (754)
T TIGR01005 259 TADSVKKALQNGGSLDVLPEVLSSQLKLEDLIQRLRERQAELRATIADLSTT---MLANHP----RVVAAKSSLADLDAQ 331 (754)
T ss_pred HHHHHHHHHhcCCCccchhhhhcCcccccHHHHHHHHHHHHHHHHHHHHHHh---hCCCCH----HHHHHHHHHHHHHHH
Confidence 44333321100 00011111 145666666666555432222121 122222 122222233333222
Q ss_pred HHHHhHHHHhh----HHHHHHhHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCCC
Q 006822 518 LNRANIEKAAS----AKEVNHRTKLMMEMVMQ----------LATQRELIQKQVYSLTSENKLLVEKLQYSGKSS 578 (630)
Q Consensus 518 l~kA~q~ke~t----lKeae~Rak~aE~lV~K----------L~~ErdrLedQl~s~keenK~L~ekld~tkk~~ 578 (630)
+.+...+-... ..-+..|-+.+...+.+ .+.+..+|+-+......-|..+...++++.-..
T Consensus 332 i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~~~ 406 (754)
T TIGR01005 332 IRSELQKITKSLLMQADAAQARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYESYLTNYRQAASRQ 406 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22111110000 11111122222222222 255666777777788888888888888775444
No 93
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=91.59 E-value=0.084 Score=60.96 Aligned_cols=173 Identities=18% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhHhhhH
Q 006822 370 QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSE 449 (630)
Q Consensus 370 EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaE 449 (630)
+.+.+...+..|++++.+.+.-......+|+.+.....+|..+...|...+ +.+..|--.+-+++ ..
T Consensus 240 ~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A----~~a~~LrDElD~lR-------~~-- 306 (713)
T PF05622_consen 240 ELADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEA----REARALRDELDELR-------EK-- 306 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhhHHHHH-------HH--
Confidence 344556666666666666666555555566555555555544444333322 12222222222222 11
Q ss_pred hHHHHHhhhHHHHHhHHHHHHHHhhhhhh---hhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHH
Q 006822 450 ASQEQQSMLYSAIWDMETLIEDLKSKVSK---AESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKA 526 (630)
Q Consensus 450 as~eqQ~mkysei~dme~vIEdLk~Kl~r---AE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~ke 526 (630)
-+.+.++++.|+-.|.|+.- -..|.+..+.++..|=+++..|+++|+-++..- ..++.+...
T Consensus 307 ---------a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~----~qle~~k~q-- 371 (713)
T PF05622_consen 307 ---------ADRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALK----SQLEEYKKQ-- 371 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----HHHHHHHHH--
Confidence 11122233333333333221 123344556667777777888888887654422 222222111
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh
Q 006822 527 ASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQ 572 (630)
Q Consensus 527 ~tlKeae~Rak~aE~lV~KL~~ErdrLedQl~s~keenK~L~ekld 572 (630)
+.+++.+......-+.+|..++.+|+..+..+..+...+..+.+
T Consensus 372 --i~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~ 415 (713)
T PF05622_consen 372 --IQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEERD 415 (713)
T ss_dssp ----------------------------------------------
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344443334444455555555565555555555444444333
No 94
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=91.17 E-value=30 Score=39.39 Aligned_cols=9 Identities=33% Similarity=0.582 Sum_probs=6.3
Q ss_pred CCcceeecc
Q 006822 589 DDKELLINP 597 (630)
Q Consensus 589 ~~~~~~~~~ 597 (630)
|.-+|+|.|
T Consensus 420 d~v~f~~~~ 428 (563)
T TIGR00634 420 DQVEFLFSA 428 (563)
T ss_pred eEEEEEEec
Confidence 566788865
No 95
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=91.16 E-value=17 Score=36.03 Aligned_cols=18 Identities=22% Similarity=0.261 Sum_probs=7.1
Q ss_pred HHHHHHhhHHHHHHHHHH
Q 006822 503 KQSFMRDKIKILESSLNR 520 (630)
Q Consensus 503 EL~~l~~~lksLE~sl~k 520 (630)
.+.-++.++..+|.....
T Consensus 166 ~~er~e~ki~~~ea~a~a 183 (221)
T PF04012_consen 166 SFERMEEKIEEMEARAEA 183 (221)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444433333
No 96
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=91.13 E-value=13 Score=39.42 Aligned_cols=52 Identities=13% Similarity=0.211 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhchhHHHH
Q 006822 253 QVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKS 309 (630)
Q Consensus 253 qe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~s 309 (630)
..|.+--=.|...|=-|= ...+.|+-..|..++..++.|.........-+..
T Consensus 126 ~vK~~aRl~aK~~WYeWR-----~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~ 177 (325)
T PF08317_consen 126 LVKTYARLEAKKMWYEWR-----MQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDE 177 (325)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556777777775 6778888888888888888887666555444433
No 97
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=90.42 E-value=40 Score=41.87 Aligned_cols=227 Identities=18% Similarity=0.205 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhchhHHHH--HHHhHHHHHhhhhHHHHHhhcCCh
Q 006822 256 FRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKS--KLGDFIEQLKAKDMVLQKLESTKN 333 (630)
Q Consensus 256 ~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~s--KL~~~~eqL~~k~~~lekl~~s~e 333 (630)
-.+..++..+-+|+=..++.+++..+..-.+..-++.+.-.++.- |..|-+ .|=...++-......+..+ .
T Consensus 237 s~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~k---e~~l~erp~li~~ke~~~~~k~rl~~~----~ 309 (1141)
T KOG0018|consen 237 SRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEK---EEKLAERPELIKVKENASHLKKRLEEI----E 309 (1141)
T ss_pred HHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhhHHhhcchhhccchhHHHHh----h
Confidence 334445555666677777777777766655555544443332210 111111 0000000000111111111 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHH----HHHHHHHHH-------HhhhhhHHHHHHHHHHH
Q 006822 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDN----FIESLKESL-------YGAESRAESAEEKVTQL 402 (630)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLer----rIelLKEel-------~rAEsRa~tAesKle~L 402 (630)
..+.+.++....+-.+++...-++..+..+-++.+.++...-+ .+.+.++.+ +.|.-++ ...|
T Consensus 310 k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg~~lnl~d~~~~ey~rlk~ea~~~~------~~el 383 (1141)
T KOG0018|consen 310 KDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQERGSELNLKDDQVEEYERLKEEACKEA------LEEL 383 (1141)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhh------HHHH
Confidence 2333444444444444444444455555555555555554444 233333333 2222222 3333
Q ss_pred hhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhh
Q 006822 403 TDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESK 482 (630)
Q Consensus 403 seTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~R 482 (630)
.--|.+-...-..|.+ ...+...+|..++..+ .+++..+.+++.+...+.-.....++++.++..-+.+
T Consensus 384 ~~ln~~~r~~~~~ld~----~~~~~~elE~r~k~l~-------~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~ 452 (1141)
T KOG0018|consen 384 EVLNRNMRSDQDTLDH----ELERRAELEARIKQLK-------ESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESL 452 (1141)
T ss_pred HHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHH
Confidence 3333333333222322 2345666777777666 5556677767777778888888888899999999999
Q ss_pred hhhhhhhhhhhccchhhHHHHHHHHHhhHHH
Q 006822 483 TESVEEQCIVLSEDNFELKNKQSFMRDKIKI 513 (630)
Q Consensus 483 aE~aEsKc~~Lse~N~ELeEEL~~l~~~lks 513 (630)
...++++.. ++++||.-+...+-.
T Consensus 453 ~~~~~~~~~-------e~n~eL~~~~~ql~d 476 (1141)
T KOG0018|consen 453 VSSAEEEPY-------ELNEELVEVLDQLLD 476 (1141)
T ss_pred HhhhhhhHH-------HHHHHHHHHHHHHHh
Confidence 999999999 999999998776653
No 98
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=90.22 E-value=61 Score=40.89 Aligned_cols=81 Identities=21% Similarity=0.270 Sum_probs=46.4
Q ss_pred HHHHHHhhhhhhhhhHhhH--------------HHhhhHHHHHhhhhhhh-HHHHHHHHHHHHHHHHHHhccchHHHHhh
Q 006822 217 LRMLEKSLARELDLEKKIS--------------ELNQNEEQLKLKLHHTE-QVAFRMEEAAEVVWGRFLEAENSAEVLMG 281 (630)
Q Consensus 217 LrMLekSla~EldLEkkL~--------------es~~~eeeLk~kL~~~e-qe~~~lEE~~~~~~er~~EAENa~EvL~g 281 (630)
+.|||.++.+++--=+++. +..+..+.++....... ....-+--....+.+||.+.+|-...|..
T Consensus 436 ~~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~ 515 (1317)
T KOG0612|consen 436 LQILEQSLVNEMQEKEKLDEKCQAVAELEEMDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEA 515 (1317)
T ss_pred hhhcccchhhHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 6788888888743222222 22223333333332222 12222334556677888888888888887
Q ss_pred hhHHHHhhhhHHhhhc
Q 006822 282 ISKEMLGRFQIVQFNL 297 (630)
Q Consensus 282 ~skel~gkLq~~qf~L 297 (630)
....+...|..+|--.
T Consensus 516 ~~~~~~eele~~q~~~ 531 (1317)
T KOG0612|consen 516 LVRQLEEELEDAQKKN 531 (1317)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777777665443
No 99
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=90.21 E-value=24 Score=38.86 Aligned_cols=19 Identities=32% Similarity=0.548 Sum_probs=9.8
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 006822 333 NSEVLTMKEKVKSLEEQLK 351 (630)
Q Consensus 333 esEv~sLqkKvksLE~qLd 351 (630)
.+.+..++.++..++.++.
T Consensus 274 hP~v~~l~~qi~~l~~~l~ 292 (498)
T TIGR03007 274 HPDVIATKREIAQLEEQKE 292 (498)
T ss_pred ChHHHHHHHHHHHHHHHHH
Confidence 4555555555555555543
No 100
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=90.10 E-value=0.17 Score=58.59 Aligned_cols=49 Identities=24% Similarity=0.280 Sum_probs=0.0
Q ss_pred HHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhHhhhH
Q 006822 401 QLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSE 449 (630)
Q Consensus 401 ~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaE 449 (630)
.+..-.++.++...-|+.......+++..|+.|+.+....|+....-++
T Consensus 485 ~L~~~Leda~~~~~~Le~~~~~~~~~~~~lq~qle~lq~~l~~~~~~~~ 533 (713)
T PF05622_consen 485 ELQSQLEDANRRKEKLEEENREANEKILELQSQLEELQKSLQEQGSKSE 533 (713)
T ss_dssp -------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3333333333333334333333345677777777766655544433333
No 101
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=89.93 E-value=52 Score=39.66 Aligned_cols=122 Identities=22% Similarity=0.340 Sum_probs=68.6
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhHhh
Q 006822 368 QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVS 447 (630)
Q Consensus 368 E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~as 447 (630)
+.++-.|+..-..|+..+.++...+.....++.++.....++..++..++... ...|.||+-.+ .+
T Consensus 595 ~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~-------s~~E~ql~~~~-------e~ 660 (769)
T PF05911_consen 595 EEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESN-------SLAETQLKAMK-------ES 660 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH-------HH
Confidence 44666667677777777777777777777777777777777777777655542 33444444332 11
Q ss_pred hHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhh
Q 006822 448 SEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDK 510 (630)
Q Consensus 448 aEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~ 510 (630)
-+..+-+-...-.++..+-.-|.-|..++.+-...-+-++.||. +|+++|..+...
T Consensus 661 ~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~-------~Le~el~r~~~~ 716 (769)
T PF05911_consen 661 YESLETRLKDLEAEAEELQSKISSLEEELEKERALSEELEAKCR-------ELEEELERMKKE 716 (769)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHH-------HHHHHHHhhhcc
Confidence 11111111111122223333333344555544444455678898 889888887543
No 102
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=89.78 E-value=47 Score=38.96 Aligned_cols=101 Identities=19% Similarity=0.206 Sum_probs=63.8
Q ss_pred hhhhhhhhccchhhHHHHHHHHHhhHHH--HHH--HHHHHhHHHHhhHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHH
Q 006822 486 VEEQCIVLSEDNFELKNKQSFMRDKIKI--LES--SLNRANIEKAASAKEVNHR---TKLMMEMVMQLATQRELIQKQVY 558 (630)
Q Consensus 486 aEsKc~~Lse~N~ELeEEL~~l~~~lks--LE~--sl~kA~q~ke~tlKeae~R---ak~aE~lV~KL~~ErdrLedQl~ 558 (630)
+...+--++..|-+|...|+.+...-.. ++. ..+.+..-.-..-.|.+.| ..|+...+.++..|+++|..+|-
T Consensus 291 ~qe~Lea~~qqNqqL~~qls~~~~~~eg~~~~~~~~~ee~~~~~~~ipEd~es~E~m~~f~~~a~~~~eeEr~~L~~qL~ 370 (617)
T PF15070_consen 291 AQEHLEALSQQNQQLQAQLSLMALPGEGDGLESESEEEEAPQPMPSIPEDLESREAMVEFFNSALAQAEEERARLRRQLE 370 (617)
T ss_pred HHHHHHHHHhhhHHHHHHHHhhcCCCCCcccccccccccccCcCcccccccccHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3444566677777777777765444321 110 0000111111113344444 67899999999999999999999
Q ss_pred HHHHhhhHHHHHHhhcCCCCcceeccCC
Q 006822 559 SLTSENKLLVEKLQYSGKSSSATMYNAG 586 (630)
Q Consensus 559 s~keenK~L~ekld~tkk~~~~~~~~~~ 586 (630)
..+.....+...+-...+++...+...|
T Consensus 371 eqk~~~q~L~h~va~~q~e~e~~a~~~~ 398 (617)
T PF15070_consen 371 EQKVQCQHLAHQVASAQKEPEAEAPAPG 398 (617)
T ss_pred HHHHHHHHhhhccccccccccccccCcc
Confidence 8888888888888777777776655443
No 103
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=89.54 E-value=26 Score=35.71 Aligned_cols=144 Identities=24% Similarity=0.279 Sum_probs=70.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHH-------HhhhhhHHHHHHHHHHHhhh
Q 006822 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESL-------YGAESRAESAEEKVTQLTDT 405 (630)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel-------~rAEsRa~tAesKle~LseT 405 (630)
++...-|...+..|.++++..+--++.|++ ...++.+|......|++.- ...|.-.++-.++...|-+-
T Consensus 35 ee~na~L~~e~~~L~~q~~s~Qqal~~aK~----l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqee 110 (193)
T PF14662_consen 35 EEGNAQLAEEITDLRKQLKSLQQALQKAKA----LEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEE 110 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677777777777766544444422 1333333333333333332 22233333334444445555
Q ss_pred hHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhh
Q 006822 406 NLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAE 480 (630)
Q Consensus 406 NdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE 480 (630)
|-.+..+++-+..+.-.-..+-..|=+||.+++.=+-+-.+++...-.+...+...|...-.++++|+.+.+|-|
T Consensus 111 n~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LE 185 (193)
T PF14662_consen 111 NGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIEEYRSITEELRLEKSRLE 185 (193)
T ss_pred HhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555543211223344555665555333343444444444445555566666666666666655444
No 104
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=89.43 E-value=28 Score=35.77 Aligned_cols=86 Identities=10% Similarity=0.137 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhh-----------
Q 006822 336 VLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTD----------- 404 (630)
Q Consensus 336 v~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~Lse----------- 404 (630)
+..+.+.+..|+.+++....+...+..+..........+-.+-+.|...|.+-...+.....+...+..
T Consensus 47 ~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~ 126 (264)
T PF06008_consen 47 LDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQ 126 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHH
Confidence 444555566666666666666665555544433334444444444444444444444444444433333
Q ss_pred -hhHHHHHHhhhhhcCCC
Q 006822 405 -TNLELSEEINFLKGNND 421 (630)
Q Consensus 405 -TNdELerelk~Lesrs~ 421 (630)
.-.+..+.+..+++|.+
T Consensus 127 ~~l~ea~~mL~emr~r~f 144 (264)
T PF06008_consen 127 RALAEAQRMLEEMRKRDF 144 (264)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 33444555666666643
No 105
>PLN03188 kinesin-12 family protein; Provisional
Probab=89.41 E-value=72 Score=40.51 Aligned_cols=119 Identities=19% Similarity=0.249 Sum_probs=82.2
Q ss_pred HHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhh-----hhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHh
Q 006822 453 EQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCI-----VLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAA 527 (630)
Q Consensus 453 eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~-----~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~ke~ 527 (630)
++.+.+...=+++-.-|.|.|--.+||=-| .+|++.+ =||---.|=+.|-++++..=|+|+.+|--.-+.--+
T Consensus 1121 ek~~~ll~~hr~i~egi~dvkkaaakag~k--g~~~~f~~alaae~s~l~~ereker~~~~~enk~l~~qlrdtaeav~a 1198 (1320)
T PLN03188 1121 EKHIQLLARHRRIQEGIDDVKKAAARAGVR--GAESKFINALAAEISALKVEREKERRYLRDENKSLQAQLRDTAEAVQA 1198 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 433444445555666677777776666544 7777776 011112233444455555578999988655554444
Q ss_pred h------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhh
Q 006822 528 S------AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQY 573 (630)
Q Consensus 528 t------lKeae~Rak~aE~lV~KL~~ErdrLedQl~s~keenK~L~ekld~ 573 (630)
. +|||+--+.++++--+..+.|-+++..||-.+|.++..=...+++
T Consensus 1199 agellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~klkrkh~~e~~t~~q 1250 (1320)
T PLN03188 1199 AGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKLKRKHENEISTLNQ 1250 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 899999999999999999999999999999999999666666666
No 106
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=88.91 E-value=23 Score=34.25 Aligned_cols=92 Identities=21% Similarity=0.207 Sum_probs=42.7
Q ss_pred HhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhh
Q 006822 412 EINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCI 491 (630)
Q Consensus 412 elk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~ 491 (630)
+++--++.+..-.+++..||+.|.-+...++++..=++.+.. +|+.|+.+++..-+....++.-..
T Consensus 11 kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~--------------eie~L~~el~~lt~el~~L~~EL~ 76 (140)
T PF10473_consen 11 KLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKA--------------EIETLEEELEELTSELNQLELELD 76 (140)
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444556666666666665555555555554443 222233333322222223333344
Q ss_pred hhccchhhHHHHHHHHHhhHHHHHHH
Q 006822 492 VLSEDNFELKNKQSFMRDKIKILESS 517 (630)
Q Consensus 492 ~Lse~N~ELeEEL~~l~~~lksLE~s 517 (630)
.|+..+-.|..+|.-..+++..||..
T Consensus 77 ~l~sEk~~L~k~lq~~q~kv~eLE~~ 102 (140)
T PF10473_consen 77 TLRSEKENLDKELQKKQEKVSELESL 102 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555555555443
No 107
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=88.58 E-value=26 Score=35.27 Aligned_cols=99 Identities=18% Similarity=0.270 Sum_probs=75.3
Q ss_pred hHHHHHh-HHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhh--------
Q 006822 458 LYSAIWD-METLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAAS-------- 528 (630)
Q Consensus 458 kysei~d-me~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~ke~t-------- 528 (630)
-|..|.+ =+.+|.-||.++.--..+.+..+.-..-++..|..|.+-|...+..+..|...+..+..-+.+.
T Consensus 17 YYndIT~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~ 96 (201)
T PF13851_consen 17 YYNDITLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLK 96 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3665544 4588889999988888888888888888999999999999999999999999998887666643
Q ss_pred -----HHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 006822 529 -----AKEVNHRTKLMMEMVMQLATQRELIQKQ 556 (630)
Q Consensus 529 -----lKeae~Rak~aE~lV~KL~~ErdrLedQ 556 (630)
++++.--.++.+.-+.++..|||.|...
T Consensus 97 ~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~k 129 (201)
T PF13851_consen 97 ELEKELKDLKWEHEVLEQRFEKLEQERDELYRK 129 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555666666666666666654
No 108
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=88.44 E-value=59 Score=38.31 Aligned_cols=370 Identities=19% Similarity=0.190 Sum_probs=169.8
Q ss_pred HHHHHHHHHhhhhhhhhHHhHHHHHHHHHhhhhcccceeccccchhhHHHHHHHhHhhhhhhHhhHHHHHHHHHHHHHhh
Q 006822 92 IEKALVYDLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQS 171 (630)
Q Consensus 92 ~eka~efDlL~gildsEv~ele~~~~~lq~~I~~~~~~~~s~~~~~~~f~~~~~~~~kL~~~~~sLkq~qe~~~ei~~qs 171 (630)
.-|-|-|+=|-.-||+++++|.+-=++.+. .|+...+-. +-|=.- -=+.|+.-..--||++|..|--+-+-|
T Consensus 11 ~Wk~~dle~LQreLd~~~~~l~~~Q~~S~~----srk~L~e~t---refkk~-~pe~k~k~~~~llK~yQ~EiD~LtkRs 82 (629)
T KOG0963|consen 11 YWKRFDLERLQRELDAEATEIAQRQDESEI----SRKRLAEET---REFKKN-TPEDKLKMVNPLLKSYQSEIDNLTKRS 82 (629)
T ss_pred HHHhccHHHHHHHHHHHHHHHHhhhhhHHH----HHHHHHHhH---HHHhcc-CcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677888999999999999887665543 333322211 111110 015688888888999999999887766
Q ss_pred Hhhhhh----hhhcccCCCcccccccccCCccccccccccc-chHHHHHHHHHHHHhhhhhhhhhHhhHHHhhhHHHHHh
Q 006822 172 AKFQRV----LSYFIHGNNDEALEFSANGQLSNINGKSKMK-NADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKL 246 (630)
Q Consensus 172 a~f~r~----~~~~~~~~~~~~~~~~e~~~~~~~~~~~~mq-t~eqqR~iLrMLekSla~EldLEkkL~es~~~eeeLk~ 246 (630)
--=+.+ -..+..-+.... + ..+ -.+-..+.+ ..++.|...+-|++-...=.|++++ +..+..|+.
T Consensus 83 k~aE~afl~vye~L~eaPDP~p--l-l~s---a~~~l~k~~~~~~e~~~lk~~lee~~~el~~~k~q----q~~v~~l~e 152 (629)
T KOG0963|consen 83 KFAEAAFLDVYEKLIEAPDPVP--L-LAS---AAELLNKQQKASEENEELKEELEEVNNELADLKTQ----QVTVRNLKE 152 (629)
T ss_pred HhhHHHHHHHHHHHhhCCCCch--H-HHH---HHHHhhhhhhhhhhHHHHHHHHHHHHHHHhhhhhh----HHHHHhHHH
Confidence 433333 222222222111 0 000 011111111 3455556666666544433333332 223445555
Q ss_pred hhhhhhHH-HHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHH
Q 006822 247 KLHHTEQV-AFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVL 325 (630)
Q Consensus 247 kL~~~eqe-~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~l 325 (630)
++.-.++. .-+.+.++...|...- .|..+...| +++..+..+-.+......=+.+.+.++..--+|....+..
T Consensus 153 ~l~k~~~~~~~~ie~~a~~~e~~~~--q~~~e~e~~----L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~ 226 (629)
T KOG0963|consen 153 RLRKLEQLLEIFIENAANETEEKLE--QEWAEREAG----LKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKY 226 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhh
Confidence 55444443 2345556667766542 233333333 3333333333333222222222222222222222111110
Q ss_pred HHhhcC-------ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh--------HHHHHhHHHHHHHHHHHHHhhhh
Q 006822 326 QKLEST-------KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS--------QEQLNEMDNFIESLKESLYGAES 390 (630)
Q Consensus 326 ekl~~s-------~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEes--------E~EVaaLerrIelLKEel~rAEs 390 (630)
+.=... --.++-.-+.++-.+|.+......|+..++.+.... ...+..+++.|..|=.+|.+=++
T Consensus 227 dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~ 306 (629)
T KOG0963|consen 227 DEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEA 306 (629)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 000000 123344445555566666666666666555544332 33444567777777666665544
Q ss_pred hHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHH
Q 006822 391 RAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIE 470 (630)
Q Consensus 391 Ra~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIE 470 (630)
-+.....+... -+..||++++....-|+.-+.-... |+ -|++|+.-+.+..
T Consensus 307 S~~~e~e~~~~------------------------qI~~le~~l~~~~~~leel~~kL~~----~s-DYeeIK~ELsiLk 357 (629)
T KOG0963|consen 307 SLVEEREKHKA------------------------QISALEKELKAKISELEELKEKLNS----RS-DYEEIKKELSILK 357 (629)
T ss_pred HHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHhh----hc-cHHHHHHHHHHHH
Confidence 43333322111 1223333333332111111111111 12 6888988887765
Q ss_pred HHhhh-hhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHH
Q 006822 471 DLKSK-VSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKIL 514 (630)
Q Consensus 471 dLk~K-l~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksL 514 (630)
...=- ...|...-+.+..==..|-+.|..|..|++.||...-.+
T Consensus 358 ~ief~~se~a~~~~~~~~~leslLl~knr~lq~e~a~Lr~~n~~~ 402 (629)
T KOG0963|consen 358 AIEFGDSEEANDEDETAKTLESLLLEKNRKLQNENASLRVANSGL 402 (629)
T ss_pred HhhcCCcccccccccccchHHHHHHHHHhhhhHHHHHHhcccccc
Confidence 22211 112221112222223456688888888888886554433
No 109
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=87.92 E-value=15 Score=34.57 Aligned_cols=34 Identities=21% Similarity=0.332 Sum_probs=16.3
Q ss_pred hHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhh
Q 006822 458 LYSAIWDMETLIEDLKSKVSKAESKTESVEEQCI 491 (630)
Q Consensus 458 kysei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~ 491 (630)
+.+++.++..-++-|+..+.+.+++.+.++.++.
T Consensus 57 l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~ 90 (151)
T PF11559_consen 57 LSDKLRRLRSDIERLQNDVERLKEQLEELERELA 90 (151)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555455555555544444444444
No 110
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=87.90 E-value=59 Score=37.68 Aligned_cols=123 Identities=12% Similarity=0.234 Sum_probs=55.3
Q ss_pred HHHhccchHHHHhhhhHHHHh--hhhHHhhhcccchhch-hHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHH
Q 006822 268 RFLEAENSAEVLMGISKEMLG--RFQIVQFNLNGSLQRE-SELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVK 344 (630)
Q Consensus 268 r~~EAENa~EvL~g~skel~g--kLq~~qf~L~as~~RE-sel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvk 344 (630)
.+++.++..++|....+.+.| .+.....+|.....|- ++. .......+++..+..+..+. .+...+..++.
T Consensus 160 ~la~~~~~~~~l~~Ai~~LlGl~~~~~L~~dl~~~~~~~~~~~--~~~~~~~~~~~le~el~~l~----~~~e~l~~~i~ 233 (650)
T TIGR03185 160 ALANPDRLASLLKEAIEVLLGLDLIDRLAGDLTNVLRRRKKSE--LPSSILSEIEALEAELKEQS----EKYEDLAQEIA 233 (650)
T ss_pred HHhccccchHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 466778888877766666654 3445566666643321 111 01112222222222222211 12222333333
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhh----HHHHHhHHHHHHHHHHHHHhhhhhHHHHH
Q 006822 345 SLEEQLKESEIRLQNANACFQTS----QEQLNEMDNFIESLKESLYGAESRAESAE 396 (630)
Q Consensus 345 sLE~qLdes~eQL~~A~aklEes----E~EVaaLerrIelLKEel~rAEsRa~tAe 396 (630)
.++.+++..+.++..+...+... ..+...++..+..++.++.+++.++....
T Consensus 234 ~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~~l~ 289 (650)
T TIGR03185 234 HLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLRELA 289 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333333333333222221 33455667777777777766666665443
No 111
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=87.83 E-value=63 Score=37.96 Aligned_cols=141 Identities=18% Similarity=0.193 Sum_probs=85.7
Q ss_pred HHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHH
Q 006822 267 GRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSL 346 (630)
Q Consensus 267 er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksL 346 (630)
..+.|-.|+.-.|.+.--++-.+||+-|+--+....+=+++..||....+ +++. ++.|+..|+..-..+
T Consensus 167 ~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e----------~le~-K~qE~~~Lq~q~dq~ 235 (617)
T PF15070_consen 167 EQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKE----------KLEL-KSQEAQSLQEQRDQY 235 (617)
T ss_pred HHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHh-hhHHHHHHHHHHHHH
Confidence 44455555555555555555555555554433333333333333333333 4444 367788888877777
Q ss_pred HHHHHHHHHHHHHhHhhhhhhHH-------HHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhc
Q 006822 347 EEQLKESEIRLQNANACFQTSQE-------QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKG 418 (630)
Q Consensus 347 E~qLdes~eQL~~A~aklEesE~-------EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Les 418 (630)
-.+|..|....+......++..- -+..|.+--.--+..+..+-.-++.+...++.++.-|.+|...+..+-.
T Consensus 236 ~~~Lqqy~a~~q~l~~e~e~L~~q~l~Qtql~d~lq~eE~q~~~~~E~~~~ELq~~qe~Lea~~qqNqqL~~qls~~~~ 314 (617)
T PF15070_consen 236 LGHLQQYVAAYQQLASEKEELHKQLLQQTQLMDRLQHEESQGKVQLEMAHQELQEAQEHLEALSQQNQQLQAQLSLMAL 314 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcC
Confidence 77777776666555554444311 2345555444555667777888889999999999999999998875433
No 112
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=87.81 E-value=59 Score=37.54 Aligned_cols=327 Identities=19% Similarity=0.228 Sum_probs=187.5
Q ss_pred chHHHHHHHHHHHHhhh--------hhhhhhHhhHHHhhhHHHHHhhhhhhhHH----HHHHHHHHHHHHHHHHhccchH
Q 006822 209 NADQQRHILRMLEKSLA--------RELDLEKKISELNQNEEQLKLKLHHTEQV----AFRMEEAAEVVWGRFLEAENSA 276 (630)
Q Consensus 209 t~eqqR~iLrMLekSla--------~EldLEkkL~es~~~eeeLk~kL~~~eqe----~~~lEE~~~~~~er~~EAENa~ 276 (630)
|.+||---=+|.||.|- +=|+++-.-.. .+++||......-+- ...+-+.-..+++++-||.-.+
T Consensus 218 tl~qq~~~e~~Vek~lfdY~~~~Y~~fl~~~~~~~~---~e~Elk~~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s 294 (622)
T COG5185 218 TLDQQDRYELMVEKLLFDYFTESYKSFLKLEDNYEP---SEQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEAMKIS 294 (622)
T ss_pred hHhhccHHHHHHHHHHHHHHHHHHHHHhcCCCccCc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777444567777653 34455443333 456777766544443 3445555667777777777665
Q ss_pred HHHhhhhHHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHH
Q 006822 277 EVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIR 356 (630)
Q Consensus 277 EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQ 356 (630)
+-. +.+-.|--.++.|++-..--++-+++|-..-.-.++.-..++++ +++|+..|+.+...|-.|+..-...
T Consensus 295 ~~i----~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~----kEeei~~L~~~~d~L~~q~~kq~Is 366 (622)
T COG5185 295 QKI----KTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIEL----KEEEIKALQSNIDELHKQLRKQGIS 366 (622)
T ss_pred HHH----HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH----HHHHHHHHHhhHHHHHHHHHhcCCC
Confidence 533 56667777777777655555555555554433222222222222 5788888888888887777764333
Q ss_pred HH---HhHhhhhhhHHHHHhHHHHHHH----HHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCC--------
Q 006822 357 LQ---NANACFQTSQEQLNEMDNFIES----LKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNND-------- 421 (630)
Q Consensus 357 L~---~A~aklEesE~EVaaLerrIel----LKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~-------- 421 (630)
.. ..++.-+..--++.-++-.+.. +++.=..|+.++...+-++-.+-..++.+.+-+..+...+.
T Consensus 367 ~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~~sl~~~i~~~~~~i~~~~nd~~l~iN~ 446 (622)
T COG5185 367 TEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQNITRSRSQIGHNVNDSSLKINI 446 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHhhcCCCCceeecc
Confidence 22 2222222111123233333332 33344567778888887777777777777665444433321
Q ss_pred --------CchhhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHh--h-hHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhh
Q 006822 422 --------SNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQS--M-LYSAIWDMETLIEDLKSKVSKAESKTESVEEQC 490 (630)
Q Consensus 422 --------~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~--m-kysei~dme~vIEdLk~Kl~rAE~RaE~aEsKc 490 (630)
.-.+++.-++..|... +| +.....|+ . +-..+..+.+.|-+|...+..-|.|+-.|=++|
T Consensus 447 E~~~~~~sg~~~~I~~~i~eln~~-i~--------~~~~~e~nksi~Lee~i~~~~~~i~El~~~l~~~e~~L~~a~s~~ 517 (622)
T COG5185 447 EQLFPKGSGINESIKKSILELNDE-IQ--------ERIKTEENKSITLEEDIKNLKHDINELTQILEKLELELSEANSKF 517 (622)
T ss_pred ccCCccccCchHhHHHHHHHHhHH-HH--------HHHHHHhccceeHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1144555555555432 11 11111122 1 445678888999999999999999999999999
Q ss_pred hhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhH---H-HHHHHHHHHHHHHHHHHHHHH
Q 006822 491 IVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRT---K-LMMEMVMQLATQRELIQKQVY 558 (630)
Q Consensus 491 ~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~ke~tlKeae~Ra---k-~aE~lV~KL~~ErdrLedQl~ 558 (630)
-++-++|. +|+...+..+.-||..+.+.+-.--...=+++.|- . .+.++.-.+...|..++.++.
T Consensus 518 ~~~ke~~e---~e~~a~~~E~eklE~el~~lnL~s~ts~l~~eq~vqs~~i~ld~~~~~~n~~r~~i~k~V~ 586 (622)
T COG5185 518 ELSKEENE---RELVAQRIEIEKLEKELNDLNLLSKTSILDAEQLVQSTEIKLDELKVDLNRKRYKIHKQVI 586 (622)
T ss_pred HHHHHhhH---HHHHHHHHHHHHHHHHHHHhhhhccchHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 98888775 67777777778888877776654433333333331 1 133444445555555555543
No 113
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=87.45 E-value=15 Score=37.98 Aligned_cols=122 Identities=29% Similarity=0.351 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhh
Q 006822 347 EEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKK 426 (630)
Q Consensus 347 E~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK 426 (630)
|....++..+|.........+...+..-+.++..|.++.-.|+.-+..-+.+-..+...+..|...-... ..+|
T Consensus 4 Er~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~------~eEk 77 (246)
T PF00769_consen 4 EREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQ------EEEK 77 (246)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH
Confidence 3333444444444444444444555566777888888888888777665555555555554444432211 1233
Q ss_pred hhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhh
Q 006822 427 VGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQ 489 (630)
Q Consensus 427 ~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsK 489 (630)
..|+..+.++. ..+ .. +-.++.+++.-.+.|+.++..|....+.+-.+
T Consensus 78 -~~Le~e~~e~~-------~~i---~~----l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~ 125 (246)
T PF00769_consen 78 -EQLEQELREAE-------AEI---AR----LEEESERKEEEAEELQEELEEAREDEEEAKEE 125 (246)
T ss_dssp ----HHHHHHHH-------HHH---HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHH-------HHH---HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777765 111 11 34456666666777777777766554444444
No 114
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=87.14 E-value=36 Score=34.32 Aligned_cols=50 Identities=12% Similarity=0.143 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhh
Q 006822 339 MKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGA 388 (630)
Q Consensus 339 LqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rA 388 (630)
|.--+..++++|.+....+..+.+.--..+.++...+..++..+.....|
T Consensus 29 l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~A 78 (219)
T TIGR02977 29 IRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELA 78 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345555555555555555554443334445555555555555444443
No 115
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=86.58 E-value=73 Score=37.33 Aligned_cols=31 Identities=23% Similarity=0.346 Sum_probs=16.3
Q ss_pred HHHHhHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 006822 369 EQLNEMDNFIESLKESLYGAESRAESAEEKV 399 (630)
Q Consensus 369 ~EVaaLerrIelLKEel~rAEsRa~tAesKl 399 (630)
+++++++..+...+.+...|+.|+++....+
T Consensus 237 ~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l 267 (754)
T TIGR01005 237 QQLAELNTELSRARANRAAAEGTADSVKKAL 267 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555544433
No 116
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=86.43 E-value=28 Score=32.47 Aligned_cols=73 Identities=19% Similarity=0.297 Sum_probs=40.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhh
Q 006822 501 KNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQY 573 (630)
Q Consensus 501 eEEL~~l~~~lksLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQl~s~keenK~L~ekld~ 573 (630)
-+.|..++..+..+..........-+..-..+.....-.+.--..|..++..++..+--+..-|++|.+.++.
T Consensus 58 ~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 58 IKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444444444444444444444333333333444445566677777777777777778888877764
No 117
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=86.39 E-value=49 Score=35.13 Aligned_cols=143 Identities=22% Similarity=0.223 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHH-----
Q 006822 392 AESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDME----- 466 (630)
Q Consensus 392 a~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme----- 466 (630)
++.....|..|+++|.+|-+.+-..+..+. .++..| -+|-..|-.+.+.+
T Consensus 8 l~el~~h~~~L~~~N~~L~~~IqdtE~st~---~~Vr~l----------------------Lqqy~~~~~~i~~le~~~~ 62 (258)
T PF15397_consen 8 LQELKKHEDFLTKLNKELIKEIQDTEDSTA---LKVRKL----------------------LQQYDIYRTAIDILEYSNH 62 (258)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhHHhhHH---HHHHHH----------------------HHHHHHHHHHHHHHHccCh
Confidence 344556677777777777777766555431 222111 12222455555544
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHH
Q 006822 467 TLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQL 546 (630)
Q Consensus 467 ~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL 546 (630)
.-+++++++|...+++ .+++.. .|..++..+..++......++-..-.++ +|--.|+=-|-.++.+|
T Consensus 63 ~~l~~ak~eLqe~eek---~e~~l~-------~Lq~ql~~l~akI~k~~~el~~L~TYkD---~EYPvK~vqIa~L~rql 129 (258)
T PF15397_consen 63 KQLQQAKAELQEWEEK---EESKLS-------KLQQQLEQLDAKIQKTQEELNFLSTYKD---HEYPVKAVQIANLVRQL 129 (258)
T ss_pred HHHHHHHHHHHHHHHH---HHhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhhhHHHHHHHHHHHHH
Confidence 3456666777766644 556677 7777777777777766666666655555 67777777788889999
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHh
Q 006822 547 ATQRELIQKQVYSLTSENKLLVEKLQ 572 (630)
Q Consensus 547 ~~ErdrLedQl~s~keenK~L~ekld 572 (630)
+.-.|+-++++-.+.+-.+..-..+-
T Consensus 130 q~lk~~qqdEldel~e~~~~el~~l~ 155 (258)
T PF15397_consen 130 QQLKDSQQDELDELNEMRQMELASLS 155 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888777776655443
No 118
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=85.93 E-value=86 Score=37.53 Aligned_cols=144 Identities=20% Similarity=0.257 Sum_probs=88.1
Q ss_pred HHHhhhhHHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhh----hHHHHHhhcC---ChhHHHHHHHHHHHHHHH
Q 006822 277 EVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAK----DMVLQKLEST---KNSEVLTMKEKVKSLEEQ 349 (630)
Q Consensus 277 EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k----~~~lekl~~s---~esEv~sLqkKvksLE~q 349 (630)
+-+.|-...++..+.-.+++.++-..+|.+++--+...+-++... +..+-++... .+.++..+.--+..++++
T Consensus 115 ~a~~~~e~~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke 194 (716)
T KOG4593|consen 115 EALKGQEEKLQEQLERNRNQCQANLKKELELLREKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKE 194 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888889999999999999999999999888777777666542 1111111111 234444444445555555
Q ss_pred HHHHHHHHHHhHhhhhh---hHHHHHhHHHHHHHHHHHHHhhhhhHH------HHHHHHHHHhhhhHHHHHHhhhhhcCC
Q 006822 350 LKESEIRLQNANACFQT---SQEQLNEMDNFIESLKESLYGAESRAE------SAEEKVTQLTDTNLELSEEINFLKGNN 420 (630)
Q Consensus 350 Ldes~eQL~~A~aklEe---sE~EVaaLerrIelLKEel~rAEsRa~------tAesKle~LseTNdELerelk~Lesrs 420 (630)
++..-.|+....-+.-+ ...++++-+-.+......++..++-.. .-.+.++.+..++.+...+++.++.+.
T Consensus 195 ~~~~~~ql~~~~q~~~~~~~~l~e~~~~~qq~a~~~~ql~~~~ele~i~~~~~dqlqel~~l~~a~~q~~ee~~~~re~~ 274 (716)
T KOG4593|consen 195 LDRQHKQLQEENQKIQELQASLEERADHEQQNAELEQQLSLSEELEAINKNMKDQLQELEELERALSQLREELATLRENR 274 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 65555555544433322 244555666666666666666643321 234556677777777777777776653
No 119
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=85.41 E-value=49 Score=39.75 Aligned_cols=123 Identities=25% Similarity=0.259 Sum_probs=69.0
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhh
Q 006822 378 IESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSM 457 (630)
Q Consensus 378 IelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~m 457 (630)
-.+.+..+.--|.|..+|.....-...-||+++.++.-=..---...+|.-+|-.+|.-++.+|+++-. +++.-+
T Consensus 65 k~d~E~ritt~e~rflnaqre~t~~~d~ndklE~~Lankda~lrq~eekn~slqerLelaE~~l~qs~r-ae~lpe---- 139 (916)
T KOG0249|consen 65 KEDMEERITTLEKRFLNAQRESTSIHDLNDKLENELANKDADLRQNEEKNRSLQERLELAEPKLQQSLR-AETLPE---- 139 (916)
T ss_pred hcccccccchHHHHHHhccCCCCCcccchHHHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhHHh-hhhhhh----
Confidence 344555666667777777777778888899998876522221112356677777777777777777666 554433
Q ss_pred hHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHH
Q 006822 458 LYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIK 512 (630)
Q Consensus 458 kysei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lk 512 (630)
.-+++.+-.. .+.+|+.+-...|..+.-|-..|-+++.||.-.+.+++
T Consensus 140 veael~qr~~-------al~~aee~~~~~eer~~kl~~~~qe~naeL~rarqree 187 (916)
T KOG0249|consen 140 VEAELAQRNA-------ALTKAEEHSGNIEERTRKLEEQLEELNAELQRARQREK 187 (916)
T ss_pred hHHHHHHHHH-------HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222221111 12233333334444444444445577777776666665
No 120
>PRK10869 recombination and repair protein; Provisional
Probab=85.03 E-value=79 Score=36.33 Aligned_cols=40 Identities=10% Similarity=0.082 Sum_probs=23.3
Q ss_pred chhhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHH-HHHhHHHHHHHHhhhhh
Q 006822 423 NTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYS-AIWDMETLIEDLKSKVS 477 (630)
Q Consensus 423 deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkys-ei~dme~vIEdLk~Kl~ 477 (630)
|.++++.+|..|-... .-.+ ||- ++.++...-+.++.++.
T Consensus 294 dp~~l~~ie~Rl~~l~-----------~L~r----Kyg~~~~~~~~~~~~l~~eL~ 334 (553)
T PRK10869 294 DPNRLAELEQRLSKQI-----------SLAR----KHHVSPEELPQHHQQLLEEQQ 334 (553)
T ss_pred CHHHHHHHHHHHHHHH-----------HHHH----HhCCCHHHHHHHHHHHHHHHH
Confidence 6778888888776665 4445 665 44444444444444433
No 121
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=84.93 E-value=56 Score=34.49 Aligned_cols=39 Identities=13% Similarity=-0.055 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCCCcceecc
Q 006822 546 LATQRELIQKQVYSLTSENKLLVEKLQYSGKSSSATMYN 584 (630)
Q Consensus 546 L~~ErdrLedQl~s~keenK~L~ekld~tkk~~~~~~~~ 584 (630)
+..++..++.++.....+...+...++.+.--+|++-+.
T Consensus 244 ~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~i~AP~dG~V 282 (423)
T TIGR01843 244 VLEELTEAQARLAELRERLNKARDRLQRLIIRSPVDGTV 282 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcEEECCCCcEE
Confidence 334556666667777777777777788888888876544
No 122
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=84.61 E-value=80 Score=36.04 Aligned_cols=162 Identities=20% Similarity=0.202 Sum_probs=98.3
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhHhh
Q 006822 368 QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVS 447 (630)
Q Consensus 368 E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~as 447 (630)
-.+...|.+|.-.|+|.+-+.|-|+..+.+.=+ .|-+. +..+ -+|...|++-.-..+.| +.
T Consensus 249 kqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~---------rrhrE-il~k----~eReasle~Enlqmr~q-----ql 309 (502)
T KOG0982|consen 249 KQENLQLVHRYHMLEEQRREQELRAEESLSEEE---------RRHRE-ILIK----KEREASLEKENLQMRDQ-----QL 309 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH---------HHHHH-HHHH----HHHHHHHHHHHHHHHHH-----HH
Confidence 457889999999999999999988877654321 11111 1111 14555666655555433 33
Q ss_pred hHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHh
Q 006822 448 SEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAA 527 (630)
Q Consensus 448 aEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~ke~ 527 (630)
.+.+-+ +.+.++|.-..++.|-+...|...++|.+-.+++ ..-+.=.-+..+| -+..+++.+
T Consensus 310 eeente----lRs~~arlksl~dklaee~qr~sd~LE~lrlql~-------~eq~l~~rm~d~L-------rrfq~ekea 371 (502)
T KOG0982|consen 310 EEENTE----LRSLIARLKSLADKLAEEDQRSSDLLEALRLQLI-------CEQKLRVRMNDIL-------RRFQEEKEA 371 (502)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-------HHHHHHHHHHHHH-------HHHHHhhHH
Confidence 445555 8899999999999999998888888888887777 3322222233333 334455555
Q ss_pred hHHHHHHhHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHhhhHHHHHHhh
Q 006822 528 SAKEVNHRTKLMMEMVMQLAT------------------QRELIQKQVYSLTSENKLLVEKLQY 573 (630)
Q Consensus 528 tlKeae~Rak~aE~lV~KL~~------------------ErdrLedQl~s~keenK~L~ekld~ 573 (630)
|. ++|+++...|.. ...-|+..+-.++.+|..|.+..+.
T Consensus 372 tq-------ELieelrkelehlr~~kl~~a~p~rgrsSaRe~eleqevkrLrq~nr~l~eqnee 428 (502)
T KOG0982|consen 372 TQ-------ELIEELRKELEHLRRRKLVLANPVRGRSSAREIELEQEVKRLRQPNRILSEQNEE 428 (502)
T ss_pred HH-------HHHHHHHHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHhccccchhhhhhhh
Confidence 52 333343333322 2334666677777788777555443
No 123
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=83.92 E-value=26 Score=37.67 Aligned_cols=46 Identities=11% Similarity=0.152 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhc
Q 006822 253 QVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQR 303 (630)
Q Consensus 253 qe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~R 303 (630)
-.+-+--=.|...|==|= ...+.|+-..+...+..++.|..-....
T Consensus 121 lvK~~aRl~ak~~WYeWR-----~kllegLk~~L~~~~~~l~~D~~~L~~~ 166 (312)
T smart00787 121 LVKTFARLEAKKMWYEWR-----MKLLEGLKEGLDENLEGLKEDYKLLMKE 166 (312)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455666666553 3456677777777777776665544433
No 124
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=83.62 E-value=1.3e+02 Score=37.59 Aligned_cols=221 Identities=14% Similarity=0.163 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHH------hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhH
Q 006822 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLN------EMDNFIESLKESLYGAESRAESAEEKVTQLTDTNL 407 (630)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVa------aLerrIelLKEel~rAEsRa~tAesKle~LseTNd 407 (630)
.|+..|+++-++||+.++.....|..-....+..+..|- .....|+.|..+..--+ ...-..+....-++-+
T Consensus 181 ~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~~v~--y~~~~~ey~~~k~~~~ 258 (1072)
T KOG0979|consen 181 IELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELLEKKKKWVE--YKKHDREYNAYKQAKD 258 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--hHhhhHHHHHHHHHHH
Q ss_pred HHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhh
Q 006822 408 ELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVE 487 (630)
Q Consensus 408 ELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aE 487 (630)
-+..+++.|.-.-..=+.+...||++.++...+.-.+....-++.++-..+++.+.++..-++.++.+++-...+++.-.
T Consensus 259 r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq 338 (1072)
T KOG0979|consen 259 RAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQ 338 (1072)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 006822 488 EQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLL 567 (630)
Q Consensus 488 sKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQl~s~keenK~L 567 (630)
..+. ..+--+-.++.-+..+.--+.-+.++.+.+.++...--.++-..++-....-......+...
T Consensus 339 ~~i~--------------~~~k~i~~~q~el~~~~~~e~~~~~~~ei~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~l~ 404 (1072)
T KOG0979|consen 339 KRIE--------------KAKKMILDAQAELQETEDPENPVEEDQEIMKEVLQKKSSKLRDSRQEIDAEQLKSQKLRDLE 404 (1072)
T ss_pred HHHH--------------HHHHHHHHHHhhhhhcCCccccchhHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q ss_pred HHH
Q 006822 568 VEK 570 (630)
Q Consensus 568 ~ek 570 (630)
+-+
T Consensus 405 ~~k 407 (1072)
T KOG0979|consen 405 NKK 407 (1072)
T ss_pred HHH
No 125
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.47 E-value=67 Score=34.27 Aligned_cols=62 Identities=23% Similarity=0.230 Sum_probs=35.3
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh
Q 006822 499 ELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQ 572 (630)
Q Consensus 499 ELeEEL~~l~~~lksLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQl~s~keenK~L~ekld 572 (630)
.|+.++..+-.....+|..+. ++.....--.+++.+|+..-...+.+...+. +-+.++....
T Consensus 166 ~l~~~~e~l~al~~e~e~~~~-----------~L~~qk~e~~~l~~~~aa~~a~~~~e~a~l~-~qka~a~a~a 227 (265)
T COG3883 166 ALEDKLETLVALQNELETQLN-----------SLNSQKAEKNALIAALAAKEASALGEKAALE-EQKALAEAAA 227 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHH
Confidence 455555555555555555443 3344444455667777777777777776666 4445444443
No 126
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=82.65 E-value=57 Score=32.91 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=14.5
Q ss_pred HHHHhhhhhhhhhhhhhhhhhhh
Q 006822 469 IEDLKSKVSKAESKTESVEEQCI 491 (630)
Q Consensus 469 IEdLk~Kl~rAE~RaE~aEsKc~ 491 (630)
.++|..+|+.++.+++..+.++.
T Consensus 120 ReeL~~kL~~~~~~l~~~~~ki~ 142 (194)
T PF15619_consen 120 REELQRKLSQLEQKLQEKEKKIQ 142 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666666666
No 127
>PLN02939 transferase, transferring glycosyl groups
Probab=81.85 E-value=1.5e+02 Score=37.02 Aligned_cols=51 Identities=18% Similarity=0.287 Sum_probs=37.3
Q ss_pred HHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhh
Q 006822 468 LIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAAS 528 (630)
Q Consensus 468 vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~ke~t 528 (630)
.|+-|+.|+...|+|. -.++.|+.-++..|...++.++..+.+...+-.+.
T Consensus 352 ~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (977)
T PLN02939 352 KVELLQQKLKLLEERL----------QASDHEIHSYIQLYQESIKEFQDTLSKLKEESKKR 402 (977)
T ss_pred HHHHHHHHHHHHHHHH----------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 3455677777777773 34556777888899999999999888876665553
No 128
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=81.72 E-value=1.2e+02 Score=35.75 Aligned_cols=39 Identities=5% Similarity=0.079 Sum_probs=22.7
Q ss_pred HHhHHHHhhHHHHHHhHHHHHHHH---HHHHHHHHHHHHHHH
Q 006822 520 RANIEKAASAKEVNHRTKLMMEMV---MQLATQRELIQKQVY 558 (630)
Q Consensus 520 kA~q~ke~tlKeae~Rak~aE~lV---~KL~~ErdrLedQl~ 558 (630)
.|..|=.+..|-|....+-|.+.+ ..|++|+..|..++.
T Consensus 488 ~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~ 529 (594)
T PF05667_consen 488 AYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLD 529 (594)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444777777766665554 356666666666653
No 129
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=81.72 E-value=1.4e+02 Score=36.78 Aligned_cols=63 Identities=19% Similarity=0.218 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 006822 340 KEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQL 402 (630)
Q Consensus 340 qkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~L 402 (630)
+++++....|++-+..|++.|....++.+-+..+.+++++.+|+++..=...=.....|+.+.
T Consensus 388 ~eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di 450 (980)
T KOG0980|consen 388 QEQLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDI 450 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 348888889999999999999999888888888999999999988877665555555554443
No 130
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=80.26 E-value=1.1e+02 Score=34.70 Aligned_cols=65 Identities=22% Similarity=0.241 Sum_probs=34.6
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh
Q 006822 499 ELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQ 572 (630)
Q Consensus 499 ELeEEL~~l~~~lksLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQl~s~keenK~L~ekld 572 (630)
+-+.|+..+++.|... + +...-.|++.|..-..+++-+=+..+++|-.+=.++.-..--+...|+
T Consensus 366 ~ke~E~q~lr~~l~~~------~---~~s~~~elE~rl~~lt~~Li~KQ~~lE~l~~ek~al~lqlErl~~~l~ 430 (511)
T PF09787_consen 366 EKESEIQKLRNQLSAR------A---SSSSWNELESRLTQLTESLIQKQTQLESLGSEKNALRLQLERLETQLK 430 (511)
T ss_pred HHHHHHHHHHHHHHHH------h---ccCCcHhHHHHHhhccHHHHHHHHHHHHHHhhhhhccccHHHHHHHHH
Confidence 4556666666665542 1 122245788886666655554456666555444444444444444454
No 131
>PRK10884 SH3 domain-containing protein; Provisional
Probab=79.60 E-value=20 Score=36.41 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHh
Q 006822 338 TMKEKVKSLEEQLKESEIRLQNANA 362 (630)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~a 362 (630)
++..++..+|.++.+...+|.++..
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~~ 114 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNIDN 114 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555555554443
No 132
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=79.27 E-value=57 Score=30.73 Aligned_cols=89 Identities=27% Similarity=0.338 Sum_probs=54.0
Q ss_pred hhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHH
Q 006822 364 FQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQ 443 (630)
Q Consensus 364 lEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqh 443 (630)
+-....++..+++.++-|++++..++..+..+..++..+......+...++ ..+.+++.
T Consensus 61 ~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k---------------------~~kee~~k 119 (151)
T PF11559_consen 61 LRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLK---------------------QEKEELQK 119 (151)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHH
Confidence 333456667777777777777777777777777777666655544444333 33333333
Q ss_pred hHhhhHhHHHHHhhhHH-HHHhHHHHHHHHhhhhh
Q 006822 444 AKVSSEASQEQQSMLYS-AIWDMETLIEDLKSKVS 477 (630)
Q Consensus 444 A~asaEas~eqQ~mkys-ei~dme~vIEdLk~Kl~ 477 (630)
.+..+..... .|. ++++++.-|+-||..+.
T Consensus 120 lk~~~~~~~t----q~~~e~rkke~E~~kLk~rL~ 150 (151)
T PF11559_consen 120 LKNQLQQRKT----QYEHELRKKEREIEKLKERLN 150 (151)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhc
Confidence 3344433333 333 68888888888887764
No 133
>PRK10698 phage shock protein PspA; Provisional
Probab=78.97 E-value=80 Score=32.26 Aligned_cols=13 Identities=23% Similarity=0.442 Sum_probs=8.1
Q ss_pred hhhhhhhhhhhhh
Q 006822 474 SKVSKAESKTESV 486 (630)
Q Consensus 474 ~Kl~rAE~RaE~a 486 (630)
.|+.+.|.+++..
T Consensus 173 ~ki~~~Ea~aea~ 185 (222)
T PRK10698 173 RRIDQMEAEAESH 185 (222)
T ss_pred HHHHHHHHHHhHh
Confidence 5555666666654
No 134
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=78.68 E-value=1e+02 Score=37.27 Aligned_cols=81 Identities=27% Similarity=0.309 Sum_probs=51.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHH
Q 006822 332 KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSE 411 (630)
Q Consensus 332 ~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELer 411 (630)
++.++.-+.+|+.+|-.+|.-.+.+|..+-. ++...+==+.+.+++. .+..|+++..+.++.+..+...+++++-
T Consensus 103 kda~lrq~eekn~slqerLelaE~~l~qs~r-ae~lpeveael~qr~~----al~~aee~~~~~eer~~kl~~~~qe~na 177 (916)
T KOG0249|consen 103 KDADLRQNEEKNRSLQERLELAEPKLQQSLR-AETLPEVEAELAQRNA----ALTKAEEHSGNIEERTRKLEEQLEELNA 177 (916)
T ss_pred cchhhchhHHhhhhhhHHHHHhhHhhHhHHh-hhhhhhhHHHHHHHHH----HHHHHHHhhccHHHHHHHHHHHHHHHHH
Confidence 5677777777777777777777777766655 4444333344555554 3456677777777777777766666666
Q ss_pred Hhhhhh
Q 006822 412 EINFLK 417 (630)
Q Consensus 412 elk~Le 417 (630)
+|--.+
T Consensus 178 eL~rar 183 (916)
T KOG0249|consen 178 ELQRAR 183 (916)
T ss_pred HHHHHH
Confidence 665433
No 135
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=78.54 E-value=94 Score=32.81 Aligned_cols=9 Identities=11% Similarity=0.445 Sum_probs=4.1
Q ss_pred hhhcceehh
Q 006822 619 VQAGLTFQV 627 (630)
Q Consensus 619 ~~~~~~~~~ 627 (630)
+..|.+..|
T Consensus 387 l~~Gm~~~v 395 (423)
T TIGR01843 387 LSPGMPVTA 395 (423)
T ss_pred cCCCCEEEE
Confidence 344555443
No 136
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=78.44 E-value=79 Score=34.21 Aligned_cols=99 Identities=22% Similarity=0.296 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhh
Q 006822 349 QLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVG 428 (630)
Q Consensus 349 qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~ 428 (630)
+|+..+..|+..+-+.+.-..++++|.|.++.|=+ -|..+.++.+-+.-++.+=++ .+.
T Consensus 40 QleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e--------------~c~~lek~rqKlshdlq~Ke~-------qv~ 98 (307)
T PF10481_consen 40 QLESLEAALQKQKQKVEEEKNEYSALKRENQSLME--------------SCENLEKTRQKLSHDLQVKES-------QVN 98 (307)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHH--------------HHHHHHHHHHHhhHHHhhhHH-------HHH
Confidence 33444444444554545445577788887776643 466677777777777665555 377
Q ss_pred hHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhh
Q 006822 429 ILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQ 489 (630)
Q Consensus 429 ~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsK 489 (630)
.||+||--++ . .|.+++.=|.-+|+.++|+..-+-.+...
T Consensus 99 ~lEgQl~s~K-------k--------------qie~Leqelkr~KsELErsQ~~~~~~~~s 138 (307)
T PF10481_consen 99 FLEGQLNSCK-------K--------------QIEKLEQELKRCKSELERSQQAASSGDVS 138 (307)
T ss_pred HHHHHHHHHH-------H--------------HHHHHHHHHHHHHHHHHHHHHhhccCCcc
Confidence 8888876655 2 24445555566678888887766655544
No 137
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=78.18 E-value=2.1e+02 Score=36.61 Aligned_cols=123 Identities=14% Similarity=0.249 Sum_probs=73.1
Q ss_pred HHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHH-HHHhHhhhhhhHHHHHhHHHHHHHHHHHHH
Q 006822 308 KSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIR-LQNANACFQTSQEQLNEMDNFIESLKESLY 386 (630)
Q Consensus 308 ~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQ-L~~A~aklEesE~EVaaLerrIelLKEel~ 386 (630)
...|..+++++..-...|+.+... .+.+..+....+.|... +......+-....++..+.+.+..+..++.
T Consensus 222 i~~l~e~~~~~~~~~~~le~l~~~--------~~~l~~i~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (1353)
T TIGR02680 222 LTDVADALEQLDEYRDELERLEAL--------ERALRNFLQRYRRYARTMLRRRATRLRSAQTQYDQLSRDLGRARDELE 293 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666555555544432 12333333444444442 222222222336677788888888888888
Q ss_pred hhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCC-CchhhhhhHHHHHHHHH
Q 006822 387 GAESRAESAEEKVTQLTDTNLELSEEINFLKGNND-SNTKKVGILENQLRDLE 438 (630)
Q Consensus 387 rAEsRa~tAesKle~LseTNdELerelk~Lesrs~-~deEK~~~LE~QLKEa~ 438 (630)
.++.+...++.++..+...-.++..++..|++... .+-+.+..++.|++...
T Consensus 294 ~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~~~a~~~~~eL~el~~ql~~~~ 346 (1353)
T TIGR02680 294 TAREEERELDARTEALEREADALRTRLEALQGSPAYQDAEELERARADAEALQ 346 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888877632 11233344445555444
No 138
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=77.73 E-value=72 Score=33.98 Aligned_cols=138 Identities=17% Similarity=0.118 Sum_probs=82.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhc
Q 006822 251 TEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLES 330 (630)
Q Consensus 251 ~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~ 330 (630)
..+-..|+++-...+-.++-+|+....-++.....+- +.+...--....+.|+.-+.+++.+-..+...-.
T Consensus 168 ~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d---------~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~ 238 (362)
T TIGR01010 168 RKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFD---------PKAQSSAQLSLISTLEGELIRVQAQLAQLRSITP 238 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcC---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 3556678888888888888888888777766433221 1111111122233333333333332222222222
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh
Q 006822 331 TKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLT 403 (630)
Q Consensus 331 s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~Ls 403 (630)
...+.+..++.++..|+.+++.-..++..... ..+++.....+.|+.++.-|+...+.+..+++++.
T Consensus 239 ~~~P~v~~l~~~i~~l~~~i~~e~~~i~~~~~------~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~ 305 (362)
T TIGR01010 239 EQNPQVPSLQARIKSLRKQIDEQRNQLSGGLG------DSLNEQTADYQRLVLQNELAQQQLKAALTSLQQTR 305 (362)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHhhcCCC------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23799999999999999999887766654321 12344444566777778888888888888777766
No 139
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=77.65 E-value=17 Score=35.94 Aligned_cols=108 Identities=23% Similarity=0.297 Sum_probs=47.2
Q ss_pred HhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh
Q 006822 287 LGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQT 366 (630)
Q Consensus 287 ~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEe 366 (630)
-.++-..+-+|..+-++=+++..+|.... .++..+..++...+..+......+.....++..
T Consensus 73 e~~~~~l~~ELael~r~~~el~~~L~~~~------------------~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~ 134 (194)
T PF08614_consen 73 EQKLAKLQEELAELYRSKGELAQQLVELN------------------DELQELEKELSEKERRLAELEAELAQLEEKIKD 134 (194)
T ss_dssp -----------------------------------------------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccc------------------cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555554443 333344444555555555555555555555555
Q ss_pred hHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHH
Q 006822 367 SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEE 412 (630)
Q Consensus 367 sE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELere 412 (630)
...++..++..|+.|.+++.--.-....++.|+..+.+-|.+|=.-
T Consensus 135 l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~R 180 (194)
T PF08614_consen 135 LEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVER 180 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777788888888888888888888888888888888877553
No 140
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=77.55 E-value=1.4e+02 Score=34.20 Aligned_cols=17 Identities=12% Similarity=0.393 Sum_probs=12.0
Q ss_pred CchhhhhhHHHHHHHHH
Q 006822 422 SNTKKVGILENQLRDLE 438 (630)
Q Consensus 422 ~deEK~~~LE~QLKEa~ 438 (630)
.|.++++.++.+|-..+
T Consensus 298 ~dp~~L~ele~RL~~l~ 314 (563)
T TIGR00634 298 FDPERLNEIEERLAQIK 314 (563)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 36778888888776554
No 141
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=77.39 E-value=1.1e+02 Score=33.11 Aligned_cols=211 Identities=20% Similarity=0.279 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCC
Q 006822 341 EKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNN 420 (630)
Q Consensus 341 kKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs 420 (630)
.++..+=.+-|+.+.++..........-++-..++..|+.++++-..-=++++.-......+..+.++.+ +-+++
T Consensus 34 ~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~-----~~~~~ 108 (294)
T COG1340 34 KEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFN-----LGGRS 108 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-----ccCCC
Confidence 3333333334444444444333333334445566677777777766666666665555555555555443 22222
Q ss_pred CCchhhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhH
Q 006822 421 DSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFEL 500 (630)
Q Consensus 421 ~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~EL 500 (630)
+..+++-+.....-.+-.+-.-+...+ +-..|+++....++-+..+...+...+.. +++- ++
T Consensus 109 ------~~~ler~i~~Le~~~~T~~L~~e~E~~----lvq~I~~L~k~le~~~k~~e~~~~~~el~-aei~-------~l 170 (294)
T COG1340 109 ------IKSLEREIERLEKKQQTSVLTPEEERE----LVQKIKELRKELEDAKKALEENEKLKELK-AEID-------EL 170 (294)
T ss_pred ------HHHHHHHHHHHHHHHHhcCCChHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-------HH
Confidence 466677777666444444444444433 45556665555554444333333221111 1222 44
Q ss_pred HHHHHHHHhhHHHHHHHHHHHhHHHHhh---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhc
Q 006822 501 KNKQSFMRDKIKILESSLNRANIEKAAS---AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYS 574 (630)
Q Consensus 501 eEEL~~l~~~lksLE~sl~kA~q~ke~t---lKeae~Rak~aE~lV~KL~~ErdrLedQl~s~keenK~L~ekld~t 574 (630)
-.+.+-+.+++..|=...+.+...=-.+ +-++-.++..+-.-+.++...++.+|..+-....+++-+...+...
T Consensus 171 k~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l 247 (294)
T COG1340 171 KKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKAL 247 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555544444433332222 5555666777888888899999999999999998888888777644
No 142
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=77.22 E-value=64 Score=30.17 Aligned_cols=9 Identities=33% Similarity=0.121 Sum_probs=3.8
Q ss_pred hhhhccchh
Q 006822 490 CIVLSEDNF 498 (630)
Q Consensus 490 c~~Lse~N~ 498 (630)
|--|.+-|.
T Consensus 114 ~~dL~~QN~ 122 (132)
T PF07926_consen 114 IEDLNEQNK 122 (132)
T ss_pred HHHHHHHHH
Confidence 653333333
No 143
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=77.18 E-value=73 Score=30.79 Aligned_cols=10 Identities=30% Similarity=0.611 Sum_probs=3.6
Q ss_pred HHHhHHHHHh
Q 006822 310 KLGDFIEQLK 319 (630)
Q Consensus 310 KL~~~~eqL~ 319 (630)
++..+..++.
T Consensus 82 e~~~~~~~l~ 91 (191)
T PF04156_consen 82 ELSELQQQLQ 91 (191)
T ss_pred hHHhHHHHHH
Confidence 3333333333
No 144
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=76.95 E-value=1.2e+02 Score=33.01 Aligned_cols=46 Identities=4% Similarity=0.015 Sum_probs=22.0
Q ss_pred HHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHH
Q 006822 505 SFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRE 551 (630)
Q Consensus 505 ~~l~~~lksLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~Erd 551 (630)
+.++..+..++............| ..+....++++.+-..|-..++
T Consensus 321 ~~l~~~l~~~~~~~~~l~~~~~~~-~~L~r~~~~~~~~y~~ll~r~~ 366 (444)
T TIGR03017 321 AELREALENQKAKVLELNRQRDEM-SVLQRDVENAQRAYDAAMQRYT 366 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444445544444 3344445555555555544443
No 145
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=76.76 E-value=1.8e+02 Score=35.20 Aligned_cols=104 Identities=20% Similarity=0.250 Sum_probs=65.6
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCc--hhhhhhHHHHHHHHHHHHHHhH
Q 006822 368 QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSN--TKKVGILENQLRDLEIQLQQAK 445 (630)
Q Consensus 368 E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~d--eEK~~~LE~QLKEa~~QLqhA~ 445 (630)
.+-|--|+....-.++.+.+...+++.-++++.-+..|||+....+- .++|.-.| -++-..|=.|+-+.+.-|+.+.
T Consensus 522 ~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlq-k~nrlkQdear~~~~~lvqqv~dLR~~L~~~E 600 (961)
T KOG4673|consen 522 QETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQ-KENRLKQDEARERESMLVQQVEDLRQTLSKKE 600 (961)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHH-HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677788888888999999999999999999999999999877331 23332111 1222333344444443333332
Q ss_pred hhhHhHHHHHhhhHHHHHhHH----HHHHHHhhhhhhhhhhhhhh
Q 006822 446 VSSEASQEQQSMLYSAIWDME----TLIEDLKSKVSKAESKTESV 486 (630)
Q Consensus 446 asaEas~eqQ~mkysei~dme----~vIEdLk~Kl~rAE~RaE~a 486 (630)
.. ++|.+ .=|+||+-.|.-||-|++..
T Consensus 601 q~--------------aarrEd~~R~Ei~~LqrRlqaaE~R~eel 631 (961)
T KOG4673|consen 601 QQ--------------AARREDMFRGEIEDLQRRLQAAERRCEEL 631 (961)
T ss_pred HH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 22222 55788888888888885543
No 146
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=76.59 E-value=57 Score=32.86 Aligned_cols=110 Identities=20% Similarity=0.241 Sum_probs=73.1
Q ss_pred HHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q 006822 286 MLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQ 365 (630)
Q Consensus 286 l~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklE 365 (630)
+..-|+--=||......|=..|-+--.+...-++.++..=.++..- ..+...+..++..||..+-+.+.+.+.....-+
T Consensus 77 tl~~LE~~GFnV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~-~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke 155 (190)
T PF05266_consen 77 TLSELEEHGFNVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEK-EAELKELESEIKELEMKILELQRQAAKLKEKKE 155 (190)
T ss_pred HHHHHHHcCCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555556665555554444444333333333332222222222 345566777888888888888888888888888
Q ss_pred hhHHHHHhHHHHHHHHHHHHHhhhhhHHHHH
Q 006822 366 TSQEQLNEMDNFIESLKESLYGAESRAESAE 396 (630)
Q Consensus 366 esE~EVaaLerrIelLKEel~rAEsRa~tAe 396 (630)
+...+|+.|...+..+++++..++-+-++..
T Consensus 156 ~~~~ei~~lks~~~~l~~~~~~~e~~F~~~~ 186 (190)
T PF05266_consen 156 AKDKEISRLKSEAEALKEEIENAELEFQSVA 186 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8889999999999999999999998887754
No 147
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=76.16 E-value=1.9e+02 Score=35.06 Aligned_cols=73 Identities=10% Similarity=0.221 Sum_probs=41.9
Q ss_pred ccccchhhhhhH--HHHHHHHHhhcCCccccccCCCccchHHHHHHHHHHH---hhhhhhhhHHhHHHHHHHHHhhhh
Q 006822 52 DLAYSSEKLVNL--HVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDL---LFGILDSELREVERLLDTIHVEIV 124 (630)
Q Consensus 52 ~~a~~SEKl~NL--~~l~M~~~~~~~~~E~~~~~~~~i~~~s~eka~efDl---L~gildsEv~ele~~~~~lq~~I~ 124 (630)
|+...=+.++.| .+|..-|.-+-..|-.+...+..-=..-+.+.|..|. ++-.+-.-++++..-+..++..+.
T Consensus 118 ~v~~~i~~llgld~~~f~~~v~l~QGe~~~fl~~~~~er~~il~~l~~l~~~e~~~~~l~e~~~~~~~~~e~l~~~~~ 195 (908)
T COG0419 118 DVNEKIEELLGLDKDTFTRSVYLPQGEFDAFLKSKPKERKEILDELFGLEKYEKLSELLKEVIKEAKAKIEELEGQLS 195 (908)
T ss_pred hHHHHHHHHhCCCHHHHhHHheeccHhHHHHHhcCcHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566554 6888888888888887765554432344555565555 333333444555555555555554
No 148
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=75.82 E-value=98 Score=32.11 Aligned_cols=110 Identities=21% Similarity=0.274 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhHhhhHhHHHH
Q 006822 375 DNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQ 454 (630)
Q Consensus 375 errIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eq 454 (630)
+|.-..|++.+...++-+..|...+.....++..|..+++..+.- ...|+..-.++..-.+.-...+....+.
T Consensus 4 Er~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeee-------a~~Le~k~~eaee~~~rL~~~~~~~~eE 76 (246)
T PF00769_consen 4 EREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEE-------AEELEQKRQEAEEEKQRLEEEAEMQEEE 76 (246)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH--------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555566666666666655442 2334444333332222222333333333
Q ss_pred HhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhh
Q 006822 455 QSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCI 491 (630)
Q Consensus 455 Q~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~ 491 (630)
+..+-..+......|..|.....+.+..++....+..
T Consensus 77 k~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~ 113 (246)
T PF00769_consen 77 KEQLEQELREAEAEIARLEEESERKEEEAEELQEELE 113 (246)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345667777777777777776666666554444444
No 149
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=75.74 E-value=76 Score=34.24 Aligned_cols=58 Identities=21% Similarity=0.238 Sum_probs=34.9
Q ss_pred HHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhh
Q 006822 357 LQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEIN 414 (630)
Q Consensus 357 L~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk 414 (630)
|..+++++.....++..+.+.+..++.++..-..+.+....+..++...-.++++.+.
T Consensus 206 L~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~ 263 (312)
T smart00787 206 LDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLE 263 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455666666666666666666666666666666666665555555444
No 150
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=75.59 E-value=1.5e+02 Score=33.74 Aligned_cols=167 Identities=23% Similarity=0.329 Sum_probs=98.9
Q ss_pred HHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhh
Q 006822 400 TQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKA 479 (630)
Q Consensus 400 e~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rA 479 (630)
..++--...|+...+-|++..-.+-+| |=+-+.+.+--++.-+.+--+-++|+..+-++|.-+.++..|++.=+-++
T Consensus 219 ~al~llv~tLee~~~~LktqIV~sPeK---L~~~leemk~~l~k~k~~~~~l~~K~~iL~ekv~~~qti~~e~~~~lk~i 295 (446)
T KOG4438|consen 219 NALKLLVVTLEENANCLKTQIVQSPEK---LKEALEEMKDLLQKEKSAMVELQEKAKILEEKVTNLQTIEKELKALLKKI 295 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Confidence 334444555666666677765444444 33345555555666555555666777778889999999999998877777
Q ss_pred hhhh---hhhhhhhhhhccchhhHHHHHHHHHhhH---HHHHHHHHHH---hHHHHhh----------------------
Q 006822 480 ESKT---ESVEEQCIVLSEDNFELKNKQSFMRDKI---KILESSLNRA---NIEKAAS---------------------- 528 (630)
Q Consensus 480 E~Ra---E~aEsKc~~Lse~N~ELeEEL~~l~~~l---ksLE~sl~kA---~q~ke~t---------------------- 528 (630)
.+-. ++.|.+.++| ..|++|+.........+ +-.|....+. ...+.+.
T Consensus 296 ~~~~~e~d~~Et~~v~l-ke~~~Le~q~e~~~~e~~~lk~~e~~~kqL~~~~kek~~~~Qd~~~r~~E~v~~~md~~~~~ 374 (446)
T KOG4438|consen 296 SSDGVEYDSLETKVVEL-KEILELEDQIELNQLELEKLKMFENLTKQLNELKKEKESRRQDLENRKTESVKAMMDDNIEK 374 (446)
T ss_pred HHhhhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 7776 7788877754 56778877655433322 2222322222 2222222
Q ss_pred -----------HHHHHHhHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhHHHHH
Q 006822 529 -----------AKEVNHRTKLMMEMVM--QLATQRELIQKQVYSLTSENKLLVEK 570 (630)
Q Consensus 529 -----------lKeae~Rak~aE~lV~--KL~~ErdrLedQl~s~keenK~L~ek 570 (630)
.+.++.....+...=. +.+..|..++.|+.+...++-.+...
T Consensus 375 ~n~V~~kr~a~~~kie~~~~~ik~~e~~l~~~~~r~e~~~~i~aI~l~~~llk~H 429 (446)
T KOG4438|consen 375 YNVVRQKRNAKVKKIEEKNEEIKKIELFLEIARGREELESQIVAITLECILLKMH 429 (446)
T ss_pred hcccchhhccHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222222222 66788888888988888888777554
No 151
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=75.33 E-value=1.9e+02 Score=34.77 Aligned_cols=81 Identities=16% Similarity=0.108 Sum_probs=59.3
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhHHHHhh-----------------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006822 499 ELKNKQSFMRDKIKILESSLNRANIEKAAS-----------------AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLT 561 (630)
Q Consensus 499 ELeEEL~~l~~~lksLE~sl~kA~q~ke~t-----------------lKeae~Rak~aE~lV~KL~~ErdrLedQl~s~k 561 (630)
.|++.++.+.++...+...+-...+..+.+ +...+..-+-+.+.+..+..+++.+......+-
T Consensus 528 ~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rle 607 (698)
T KOG0978|consen 528 KLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLE 607 (698)
T ss_pred HHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777788888888777777777777766666 222333444556666777777777777778888
Q ss_pred HhhhHHHHHHhhcCCCCc
Q 006822 562 SENKLLVEKLQYSGKSSS 579 (630)
Q Consensus 562 eenK~L~ekld~tkk~~~ 579 (630)
+++..|..++..+++..+
T Consensus 608 EE~e~L~~kle~~k~~~~ 625 (698)
T KOG0978|consen 608 EELERLKRKLERLKKEES 625 (698)
T ss_pred HHHHHHHHHHHHhccccc
Confidence 888888999999988877
No 152
>PRK10884 SH3 domain-containing protein; Provisional
Probab=75.04 E-value=31 Score=35.07 Aligned_cols=38 Identities=18% Similarity=0.250 Sum_probs=22.4
Q ss_pred hHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhh
Q 006822 367 SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTD 404 (630)
Q Consensus 367 sE~EVaaLerrIelLKEel~rAEsRa~tAesKle~Lse 404 (630)
+...+..|++.++.|++++..+..+...++.++..+..
T Consensus 130 ~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 130 SDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666666665555554443
No 153
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=74.16 E-value=35 Score=30.51 Aligned_cols=44 Identities=20% Similarity=0.342 Sum_probs=33.2
Q ss_pred HhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhh
Q 006822 372 NEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINF 415 (630)
Q Consensus 372 aaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~ 415 (630)
..++..|+.|..+-.+=..++..++..|..+..+|.|..+.|+.
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~ 78 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDS 78 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667777777777777777777888888888888887764
No 154
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=74.10 E-value=1.1e+02 Score=31.16 Aligned_cols=145 Identities=22% Similarity=0.296 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh----HHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHH
Q 006822 336 VLTMKEKVKSLEEQLKESEIRLQNANACFQTS----QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSE 411 (630)
Q Consensus 336 v~sLqkKvksLE~qLdes~eQL~~A~aklEes----E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELer 411 (630)
+.+||+||..||-+-..++..+.......-.+ ..+..+=++....+-..--.-.+.+..|+++|..|.+ +|+-
T Consensus 6 LK~LQeKIrrLELER~qAe~nl~~LS~et~~yk~vl~~~~~~~~~~~~e~~~q~~dl~~qL~aAEtRCslLEK---QLey 82 (178)
T PF14073_consen 6 LKNLQEKIRRLELERSQAEDNLKQLSRETSHYKKVLQSEQNERERAHQELSKQNQDLSSQLSAAETRCSLLEK---QLEY 82 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHhhhhhcccchhhhccHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 56899999999988777777665432221111 1122222222222222222334566677777777765 4555
Q ss_pred HhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhh
Q 006822 412 EINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCI 491 (630)
Q Consensus 412 elk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~ 491 (630)
+++.+++- ..||-..+|+|..--+ -+ -.-..+++++++ +++..|..|.
T Consensus 83 MRkmv~~a---e~er~~~le~q~~l~~-----e~--------------------~~~~~~~~~kle----kLe~LE~E~~ 130 (178)
T PF14073_consen 83 MRKMVESA---EKERNAVLEQQVSLQR-----ER--------------------QQDQSELQAKLE----KLEKLEKEYL 130 (178)
T ss_pred HHHHHHHH---HHhhhHHHHHHHHHHH-----Hh--------------------ccchhhHHHHHH----HHHHHHHHHH
Confidence 55555553 3456666666543111 00 011222344444 3346677788
Q ss_pred hhccchhhHHHHHHHHHhhHHHHHHHHHHHh
Q 006822 492 VLSEDNFELKNKQSFMRDKIKILESSLNRAN 522 (630)
Q Consensus 492 ~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~ 522 (630)
.|.--=++-..+++.||.+|..-.
T Consensus 131 -------rLt~~Q~~ae~Ki~~LE~KL~eEe 154 (178)
T PF14073_consen 131 -------RLTATQSLAETKIKELEEKLQEEE 154 (178)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555588889999988876543
No 155
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=73.81 E-value=1.2e+02 Score=31.89 Aligned_cols=35 Identities=20% Similarity=0.200 Sum_probs=15.1
Q ss_pred HHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHH
Q 006822 407 LELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQ 442 (630)
Q Consensus 407 dELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLq 442 (630)
.+++|-.+.++. +......++..+.++..++.+++
T Consensus 135 ~~~~R~~~L~~~-g~vS~~~~~~a~~~~~~a~~~l~ 169 (346)
T PRK10476 135 RTLERLEPLLAK-GYVSAQQVDQARTAQRDAEVSLN 169 (346)
T ss_pred HHHHHHHHHHHC-CCcCHHHHHHHHHHHHHHHHHHH
Confidence 445555554433 33333344444444444443333
No 156
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=73.42 E-value=56 Score=31.57 Aligned_cols=43 Identities=33% Similarity=0.416 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhh
Q 006822 374 MDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFL 416 (630)
Q Consensus 374 LerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~L 416 (630)
....+..+++......+-.....+++..+......+.++...+
T Consensus 107 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l 149 (191)
T PF04156_consen 107 LESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIREL 149 (191)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333
No 157
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=73.22 E-value=1.1e+02 Score=31.00 Aligned_cols=113 Identities=23% Similarity=0.364 Sum_probs=74.7
Q ss_pred HhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHH
Q 006822 318 LKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEE 397 (630)
Q Consensus 318 L~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAes 397 (630)
|.+|...++.|+ .|+.....-|...-..|-.++.....|.........++..|...+...+..+..++..+..+..
T Consensus 62 L~GKq~iveqLe----~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~ 137 (188)
T PF05335_consen 62 LAGKQQIVEQLE----QEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQ 137 (188)
T ss_pred HHhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444443 3455555555555555555555555555555556778999999999999999999988888776
Q ss_pred HHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhHhhh
Q 006822 398 KVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSS 448 (630)
Q Consensus 398 Kle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asa 448 (630)
.+.+ ....|+. -..|++.|.+||.+++.-++..+..+
T Consensus 138 el~e----------K~qLLea----Ak~Rve~L~~QL~~Ar~D~~~tk~aA 174 (188)
T PF05335_consen 138 ELAE----------KTQLLEA----AKRRVEELQRQLQAARADYEKTKKAA 174 (188)
T ss_pred HHHH----------HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6554 3233332 12579999999999998887776444
No 158
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=72.85 E-value=1.1e+02 Score=30.86 Aligned_cols=53 Identities=28% Similarity=0.329 Sum_probs=29.5
Q ss_pred HHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006822 306 ELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQ 358 (630)
Q Consensus 306 el~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~ 358 (630)
++...|+.-+.++..+....+++-..-..|...|.+-++.++.+..+...+|.
T Consensus 27 ~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~ 79 (201)
T PF13851_consen 27 ELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLK 79 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 45556666666666665555554444344555555555555555555555443
No 159
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=72.75 E-value=86 Score=29.64 Aligned_cols=98 Identities=17% Similarity=0.301 Sum_probs=60.7
Q ss_pred hHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHH
Q 006822 458 LYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTK 537 (630)
Q Consensus 458 kysei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~ke~tlKeae~Rak 537 (630)
+-+.|++++.=+--|+..+.+.+..-+.+...++-|+..|-++ +.....+..|+..+.....+-+.++.=+|-+.+
T Consensus 21 L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~----~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E 96 (120)
T PF12325_consen 21 LQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL----RALKKEVEELEQELEELQQRYQTLLELLGEKSE 96 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 5567888887777777888877777777777777666555433 334444555555555555555555555555554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 006822 538 LMMEMVMQLATQRELIQKQVYSLTSENKLLVEK 570 (630)
Q Consensus 538 ~aE~lV~KL~~ErdrLedQl~s~keenK~L~ek 570 (630)
+++-|+..|.-+|.=|+...+.
T Consensus 97 -----------~veEL~~Dv~DlK~myr~Qi~~ 118 (120)
T PF12325_consen 97 -----------EVEELRADVQDLKEMYREQIDQ 118 (120)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666666666665544
No 160
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=72.31 E-value=2.9e+02 Score=35.43 Aligned_cols=30 Identities=7% Similarity=-0.110 Sum_probs=17.6
Q ss_pred HHhhhhhhhhHHhHHHHHHHHHhhhhcccc
Q 006822 99 DLLFGILDSELREVERLLDTIHVEIVNVHH 128 (630)
Q Consensus 99 DlL~gildsEv~ele~~~~~lq~~I~~~~~ 128 (630)
|.-..=|+..+..++..+..+...+..+..
T Consensus 424 ~~~r~~l~~~~~~~~~~i~~L~~~~~~~e~ 453 (1353)
T TIGR02680 424 DARRQDADRVIAQRSEQVALLRRRDDVADR 453 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666666666666666655554443
No 161
>PF15294 Leu_zip: Leucine zipper
Probab=72.09 E-value=34 Score=36.59 Aligned_cols=94 Identities=16% Similarity=0.223 Sum_probs=69.3
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHh----------------hHHHHHHHHHHHhHHHHhh
Q 006822 465 METLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRD----------------KIKILESSLNRANIEKAAS 528 (630)
Q Consensus 465 me~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~----------------~lksLE~sl~kA~q~ke~t 528 (630)
+-..|..|+.+..+..+|.-++|..|+..-+.+.+|+..|+.++. .+..||.+...+...=..+
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek~ 209 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEKA 209 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHH
Confidence 446788899999999999999999999999999999999988877 1344666666655444555
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 006822 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVY 558 (630)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLedQl~ 558 (630)
+.+-+...+..+..|.-=-+++-+.+.++.
T Consensus 210 ~~d~~~~~k~L~e~L~~~KhelL~~QeqL~ 239 (278)
T PF15294_consen 210 LQDKESQQKALEETLQSCKHELLRVQEQLS 239 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhhh
Confidence 666666666666666666666666666643
No 162
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=71.88 E-value=2.2e+02 Score=33.96 Aligned_cols=188 Identities=15% Similarity=0.116 Sum_probs=97.5
Q ss_pred hhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHH
Q 006822 427 VGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSF 506 (630)
Q Consensus 427 ~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~ 506 (630)
...+++.+.....+|+|.....+...-+.. .+..-.+ +.++-.+-+...+......+..|...-+ ++..
T Consensus 177 ~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~-~~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~~~~~-------~i~~ 245 (670)
T KOG0239|consen 177 SLKLESDLGDLVTELEHVTNSISELESVLK-SAQEERR---VLADSLGNYADLRRNIKPLEGLESTIKK-------KIQA 245 (670)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHH---HHHHHhhhhhhHHHhhhhhhhhhhHHHH-------HHHH
Confidence 345555566665666666655554322111 0111111 1111101122333344455555553333 3444
Q ss_pred HHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCC---------
Q 006822 507 MRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSGKS--------- 577 (630)
Q Consensus 507 l~~~lksLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQl~s~keenK~L~ekld~tkk~--------- 577 (630)
+.+.+..|...+..++......-++...-...+..++..|+.....|.+.. .+...++.|..++.+.|-.
T Consensus 246 l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~-~e~~~r~kL~N~i~eLkGnIRV~CRvRP 324 (670)
T KOG0239|consen 246 LQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK-KEKEERRKLHNEILELKGNIRVFCRVRP 324 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCceEEEEecC
Confidence 444444444444444444444433333333444444778888888888888 7778888887666655211
Q ss_pred ----------CcceeccC--------CCCCCcc----eeeccCCCcccccccchHHHHHHHHhhhhcceeh
Q 006822 578 ----------SSATMYNA--------GDTDDKE----LLINPTNNLAGATVKTSEDAVSLMKSVQAGLTFQ 626 (630)
Q Consensus 578 ----------~~~~~~~~--------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (630)
+..+.++. .+..++. |-|.+--...++|..-|.|+=-+..|+--|+++-
T Consensus 325 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fdkVf~p~~sQ~~VF~e~~~lv~S~lDGYnVC 395 (670)
T KOG0239|consen 325 LLPSEKQRLQSKVIDTEEQGEVQVDSPDKGDKLEPQSFKFDKVFGPLASQDDVFEEVSPLVQSALDGYNVC 395 (670)
T ss_pred CCccccccccccccccCCcceeEeecCCCCCCCccccceeeeecCCcccHHHHHHHHHHHHHHHhcCccee
Confidence 11111111 1122233 6666666677888888999999999999888764
No 163
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=71.63 E-value=2e+02 Score=33.23 Aligned_cols=189 Identities=17% Similarity=0.224 Sum_probs=110.9
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHH
Q 006822 246 LKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVL 325 (630)
Q Consensus 246 ~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~l 325 (630)
-++..+++-.+-.|+.+ -+-||+.|-+...-+.-....+-+.++.+...|+.....|..-+.......+....-...+
T Consensus 75 ~~~~~ie~~L~~ae~~~--~~~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~l 152 (560)
T PF06160_consen 75 KQLPEIEEQLFEAEEYA--DKYRFKKAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKEL 152 (560)
T ss_pred HhhHHHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555553 3568888888888888888888888888888888888888777777766666666533333
Q ss_pred HHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHH-----HhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 006822 326 QKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQ-----NANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVT 400 (630)
Q Consensus 326 ekl~~s~esEv~sLqkKvksLE~qLdes~eQL~-----~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle 400 (630)
-.-..+=-+=+..|.+++..+|.+|.++..-.. .|..-+.....++..++..++.+-.=+.......-.- +.
T Consensus 153 l~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~q---l~ 229 (560)
T PF06160_consen 153 LAHSFSYGPAIEELEKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQ---LE 229 (560)
T ss_pred HHhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHH---HH
Confidence 322222134456788888888888888877432 3444444445566666666666665555554443332 22
Q ss_pred HHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHH
Q 006822 401 QLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQL 441 (630)
Q Consensus 401 ~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QL 441 (630)
++...=.++.++==.|..-. -.+.+..++.++..+...|
T Consensus 230 eL~~gy~~m~~~gy~l~~~~--i~~~i~~i~~~l~~~~~~L 268 (560)
T PF06160_consen 230 ELKEGYREMEEEGYYLEHLD--IEEEIEQIEEQLEEALALL 268 (560)
T ss_pred HHHHHHHHHHHCCCCCCCCC--HHHHHHHHHHHHHHHHHHH
Confidence 33333333333211121111 1445566666666555444
No 164
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=71.30 E-value=2.4e+02 Score=34.15 Aligned_cols=21 Identities=48% Similarity=0.729 Sum_probs=9.3
Q ss_pred hhhhhHHhHHHHHHHHHhhhh
Q 006822 104 ILDSELREVERLLDTIHVEIV 124 (630)
Q Consensus 104 ildsEv~ele~~~~~lq~~I~ 124 (630)
+.-.+.+++...+..++..+.
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~ 291 (908)
T COG0419 271 IREEELRELERLLEELEEKIE 291 (908)
T ss_pred HHHhHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443
No 165
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=70.64 E-value=34 Score=38.94 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=11.4
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhHH
Q 006822 499 ELKNKQSFMRDKIKILESSLNRANIE 524 (630)
Q Consensus 499 ELeEEL~~l~~~lksLE~sl~kA~q~ 524 (630)
.|..+++.++..-+..|..+.+.+.+
T Consensus 365 ~l~~~~~~~e~~kk~~e~k~~q~q~k 390 (493)
T KOG0804|consen 365 SLKQESSDLEAEKKIVERKLQQLQTK 390 (493)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333
No 166
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.20 E-value=2.7e+02 Score=34.30 Aligned_cols=92 Identities=17% Similarity=0.287 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHh
Q 006822 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEI 413 (630)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerel 413 (630)
-|+.+|+.|+++|...|-++...+..++.. |..|...+++.-.+++.-..|+..-..|+..|.---.+|+..+
T Consensus 444 ~eletLn~k~qqls~kl~Dvr~~~tt~kt~-------ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~ql 516 (1118)
T KOG1029|consen 444 QELETLNFKLQQLSGKLQDVRVDITTQKTE-------IEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQL 516 (1118)
T ss_pred HHHHHHHHHHHHHhhhhhhheeccchHHHH-------HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 345577777777777776666666555444 4444444554445555555555556666666766666777766
Q ss_pred hhhhcCCCCchhhhhhHHH
Q 006822 414 NFLKGNNDSNTKKVGILEN 432 (630)
Q Consensus 414 k~Lesrs~~deEK~~~LE~ 432 (630)
+--.....-++-+...|+.
T Consensus 517 kq~q~a~~~~~~~~s~L~a 535 (1118)
T KOG1029|consen 517 KQKQSAHKETTQRKSELEA 535 (1118)
T ss_pred HHhhhhccCcchHHHHHHH
Confidence 6555443333344444443
No 167
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.46 E-value=98 Score=32.11 Aligned_cols=94 Identities=18% Similarity=0.205 Sum_probs=65.5
Q ss_pred hhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHH---------HHHHHHHhHHHHhh----------------
Q 006822 474 SKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKIL---------ESSLNRANIEKAAS---------------- 528 (630)
Q Consensus 474 ~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksL---------E~sl~kA~q~ke~t---------------- 528 (630)
.-...-..|+++.|.||. .|.-||..|+..++-. -...-+....|-.|
T Consensus 19 dai~~v~~r~dSve~KIs-------kLDaeL~k~~~Qi~k~R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~~QsfNMeQ 91 (218)
T KOG1655|consen 19 DAIDSVNKRSDSVEKKIS-------KLDAELCKYKDQIKKTRPGPAQNALKQRALRVLKQKKMYENQKDSLDQQSFNMEQ 91 (218)
T ss_pred HHHHHHHHhhhhHHHHHH-------HHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH
Confidence 444566788899999999 8888888887766532 11111111112222
Q ss_pred -------HHHHHHhHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhhhHHHHHHhhc
Q 006822 529 -------AKEVNHRTKLMMEMVMQLATQ--------RELIQKQVYSLTSENKLLVEKLQYS 574 (630)
Q Consensus 529 -------lKeae~Rak~aE~lV~KL~~E--------rdrLedQl~s~keenK~L~ekld~t 574 (630)
+|+.-+--..+.+.+.++..+ +++|+|++.-+.+....|.+-|-.+
T Consensus 92 a~~t~e~LKdtq~Tv~AmK~~~k~mK~~ykkvnId~IedlQDem~Dlmd~a~EiQE~Lgr~ 152 (218)
T KOG1655|consen 92 ANFTAESLKDTQATVAAMKDTNKEMKKQYKKVNIDKIEDLQDEMEDLMDQADEIQEVLGRN 152 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 788877777888888888764 7899999999998888888777655
No 168
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=67.87 E-value=2.2e+02 Score=32.35 Aligned_cols=53 Identities=15% Similarity=0.295 Sum_probs=44.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHH
Q 006822 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESL 385 (630)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel 385 (630)
..+...|++-++++|.++.....++..+...+......|++++..++-|+..-
T Consensus 58 ~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 58 QDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 56677888888888888888888888888888888888999998888887766
No 169
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=67.60 E-value=52 Score=32.53 Aligned_cols=60 Identities=18% Similarity=0.265 Sum_probs=7.5
Q ss_pred HHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHH
Q 006822 462 IWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRA 521 (630)
Q Consensus 462 i~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA 521 (630)
+..+...+-.|+.++.-+-..-.....+++-++..+-+|..++.....++..|+......
T Consensus 69 ~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L 128 (194)
T PF08614_consen 69 ISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQL 128 (194)
T ss_dssp ---------------------------------------------HHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433334445555555555555555555555555555444433
No 170
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=67.50 E-value=2.4e+02 Score=33.35 Aligned_cols=140 Identities=11% Similarity=0.136 Sum_probs=79.6
Q ss_pred hhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHH------HHhhhhHHhhhcccchhchhHHHHHH
Q 006822 238 NQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKE------MLGRFQIVQFNLNGSLQRESELKSKL 311 (630)
Q Consensus 238 ~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~ske------l~gkLq~~qf~L~as~~REsel~sKL 311 (630)
..+...+..|...+.+-..|+++-...+..++-.+|++.+-++-..+. ....++.+ .++..+
T Consensus 252 ~Yi~~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~-----------~~l~~q- 319 (726)
T PRK09841 252 NYLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQI-----------VNVDNQ- 319 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH-----------HHHHHH-
Confidence 345566777777777777777777777777777777777777653221 11111111 112222
Q ss_pred HhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhh
Q 006822 312 GDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESR 391 (630)
Q Consensus 312 ~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsR 391 (630)
+.++..+...+...-....+.+..|+.++.+|+.++.....++. .+...++....|+.++.-++.-
T Consensus 320 ---l~~l~~~~~~l~~~~~~~hP~v~~l~~~~~~L~~~~~~l~~~~~-----------~~p~~e~~~~~L~R~~~~~~~l 385 (726)
T PRK09841 320 ---LNELTFREAEISQLYKKDHPTYRALLEKRQTLEQERKRLNKRVS-----------AMPSTQQEVLRLSRDVEAGRAV 385 (726)
T ss_pred ---HHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHHHHHHHHHH-----------hccHHHHHHHHHHHHHHHHHHH
Confidence 22222233333332233578899998888888777766554443 2334455555666666666666
Q ss_pred HHHHHHHHHHHh
Q 006822 392 AESAEEKVTQLT 403 (630)
Q Consensus 392 a~tAesKle~Ls 403 (630)
......|..++.
T Consensus 386 Y~~lL~r~~e~~ 397 (726)
T PRK09841 386 YLQLLNRQQELS 397 (726)
T ss_pred HHHHHHHHHHHH
Confidence 666666666543
No 171
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=67.40 E-value=86 Score=32.59 Aligned_cols=62 Identities=18% Similarity=0.254 Sum_probs=48.9
Q ss_pred HHHHHHhHHHHhh---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCC
Q 006822 516 SSLNRANIEKAAS---AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSGKS 577 (630)
Q Consensus 516 ~sl~kA~q~ke~t---lKeae~Rak~aE~lV~KL~~ErdrLedQl~s~keenK~L~ekld~tkk~ 577 (630)
.-.+...+++++. +.+|..=...++..+.++..++++....+..+.++|.-|-+..+...++
T Consensus 39 kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 39 KEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555 6666777888999999999999999999999999999998888877666
No 172
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=67.07 E-value=1.4e+02 Score=32.64 Aligned_cols=20 Identities=5% Similarity=0.112 Sum_probs=12.9
Q ss_pred HHHHHHhhhhcccceecccc
Q 006822 115 LLDTIHVEIVNVHHKISSCK 134 (630)
Q Consensus 115 ~~~~lq~~I~~~~~~~~s~~ 134 (630)
-++.++..+..|+.++.++.
T Consensus 33 ~I~~~~l~~~~A~~kF~~~~ 52 (388)
T PF04912_consen 33 DIERSRLNPDEARSKFKGAR 52 (388)
T ss_pred chhhcCCCHHHHHHHhCcCc
Confidence 36666667777777665554
No 173
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=67.03 E-value=3.5e+02 Score=34.32 Aligned_cols=31 Identities=19% Similarity=0.289 Sum_probs=22.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHhHhhhHhHHHH
Q 006822 424 TKKVGILENQLRDLEIQLQQAKVSSEASQEQ 454 (630)
Q Consensus 424 eEK~~~LE~QLKEa~~QLqhA~asaEas~eq 454 (630)
.++++.+-.|-..++.+++.....-...++|
T Consensus 278 t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQ 308 (1109)
T PRK10929 278 AQRMDLIASQQRQAASQTLQVRQALNTLREQ 308 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888888888887777777666555553
No 174
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=66.92 E-value=1e+02 Score=33.18 Aligned_cols=38 Identities=16% Similarity=0.186 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHH
Q 006822 375 DNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEE 412 (630)
Q Consensus 375 errIelLKEel~rAEsRa~tAesKle~LseTNdELere 412 (630)
-+.+.-|+++++..-.--++-..-.-+|.++||-|++.
T Consensus 90 y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLEra 127 (333)
T KOG1853|consen 90 YQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERA 127 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHh
Confidence 34455555555554444445555556677777777763
No 175
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=65.57 E-value=79 Score=34.24 Aligned_cols=81 Identities=17% Similarity=0.206 Sum_probs=55.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh----HHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHH
Q 006822 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS----QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLE 408 (630)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEes----E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdE 408 (630)
...+..+++++..|...++.|..++..-....... -..+++..+.+..+-.++.+++.|+..+.+|......+-..
T Consensus 87 ~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~~~~n~~~~~~~~t~~la~~t~~L~~~~~~l~q~~~k~~~~q~~l~~ 166 (301)
T PF06120_consen 87 KRAIEDLQKKIDSLKDQIKNYQQQLAEKGITENGYIINHLMSQADATRKLAEATRELAVAQERLEQMQSKASETQATLND 166 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777888888888887776654422111111 23466788888888888999999999998888877766555
Q ss_pred HHHHh
Q 006822 409 LSEEI 413 (630)
Q Consensus 409 Lerel 413 (630)
+.+.+
T Consensus 167 ~~~~~ 171 (301)
T PF06120_consen 167 LTEQR 171 (301)
T ss_pred HHHHH
Confidence 44443
No 176
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=65.55 E-value=1.6e+02 Score=29.82 Aligned_cols=173 Identities=21% Similarity=0.244 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHh---hhhhHHHHHHHHHHHhhhhHHHHHHhhhhh
Q 006822 341 EKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYG---AESRAESAEEKVTQLTDTNLELSEEINFLK 417 (630)
Q Consensus 341 kKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~r---AEsRa~tAesKle~LseTNdELerelk~Le 417 (630)
.|++.|.+++.+.+-.+..... .+..|+.--.| |=.+...+.+.+-. --..-+.++.+|+
T Consensus 12 ~ki~~L~n~l~elq~~l~~l~~--------------ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpq---ll~~h~eEvr~Lr 74 (194)
T PF15619_consen 12 HKIKELQNELAELQRKLQELRK--------------ENKTLKQLQKRQEKALQKYEDTEAELPQ---LLQRHNEEVRVLR 74 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHhhhhhHHH---HHHHHHHHHHHHH
Confidence 4566666666655554444332 23333333333 33333333443332 2233444555555
Q ss_pred cCCCCchhhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccch
Q 006822 418 GNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDN 497 (630)
Q Consensus 418 srs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N 497 (630)
.+-...-++...+++.+++.+.++.. .-+++.++..+++ .+ .-.+| +....+..
T Consensus 75 ~~LR~~q~~~r~~~~klk~~~~el~k--------------~~~~l~~L~~L~~---dk--nL~eR-eeL~~kL~------ 128 (194)
T PF15619_consen 75 ERLRKSQEQERELERKLKDKDEELLK--------------TKDELKHLKKLSE---DK--NLAER-EELQRKLS------ 128 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHH---cC--CchhH-HHHHHHHH------
Confidence 54222234555666666665533332 3345555555555 22 11112 33334444
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 006822 498 FELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQV 557 (630)
Q Consensus 498 ~ELeEEL~~l~~~lksLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQl 557 (630)
.++..+..-..+++.|+-+++-++..=..-+.--..+..-+..-|..|..|+++|...|
T Consensus 129 -~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~kl 187 (194)
T PF15619_consen 129 -QLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKL 187 (194)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555544433322222222222334445555555555665555554
No 177
>PF15294 Leu_zip: Leucine zipper
Probab=65.34 E-value=1e+02 Score=33.13 Aligned_cols=75 Identities=21% Similarity=0.289 Sum_probs=59.6
Q ss_pred HHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhc-------CC--CCchhhhhhHHHHHHHHHHH
Q 006822 370 QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKG-------NN--DSNTKKVGILENQLRDLEIQ 440 (630)
Q Consensus 370 EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Les-------rs--~~deEK~~~LE~QLKEa~~Q 440 (630)
-.+-++..|..|.++-.+..+|+.+.+..|...-+-...++..++.|+. +. ......+.-||.++.-++.+
T Consensus 126 ~~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e 205 (278)
T PF15294_consen 126 GSELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSE 205 (278)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHH
Confidence 4456888999999999999999999999999999999999999988887 21 22345566688888777766
Q ss_pred HHHh
Q 006822 441 LQQA 444 (630)
Q Consensus 441 LqhA 444 (630)
++.+
T Consensus 206 ~ek~ 209 (278)
T PF15294_consen 206 LEKA 209 (278)
T ss_pred HHHH
Confidence 6665
No 178
>PRK11519 tyrosine kinase; Provisional
Probab=64.98 E-value=2e+02 Score=34.09 Aligned_cols=61 Identities=18% Similarity=0.168 Sum_probs=40.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh
Q 006822 332 KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLT 403 (630)
Q Consensus 332 ~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~Ls 403 (630)
..+.+.+|..+...|+.++...+.++.. +...++.+..|+.++.-++.-......|.+++.
T Consensus 337 ~hP~v~~l~~~~~~L~~~~~~l~~~~~~-----------lp~~e~~~~~L~Re~~~~~~lY~~lL~r~~e~~ 397 (719)
T PRK11519 337 EHPAYRTLLEKRKALEDEKAKLNGRVTA-----------MPKTQQEIVRLTRDVESGQQVYMQLLNKQQELK 397 (719)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHh-----------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677888877777777666665544332 334556666777777777777777777777654
No 179
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=63.39 E-value=1.4e+02 Score=28.33 Aligned_cols=68 Identities=28% Similarity=0.362 Sum_probs=36.7
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhHh
Q 006822 368 QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKV 446 (630)
Q Consensus 368 E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~a 446 (630)
.+.|..++..+.-+++++.+.+..-..+...+-.++..|+++....+ ++..|+.++++.+.+.+-+--
T Consensus 22 ~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~-----------~~~~L~~el~~l~~ry~t~Le 89 (120)
T PF12325_consen 22 QSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKK-----------EVEELEQELEELQQRYQTLLE 89 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555556666655543332 455666667666544444433
No 180
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=63.12 E-value=37 Score=28.80 Aligned_cols=46 Identities=20% Similarity=0.263 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhh
Q 006822 345 SLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAES 390 (630)
Q Consensus 345 sLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEs 390 (630)
.+.++|..+......+..++.+++....+|...|..|+.+++...+
T Consensus 15 ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 15 AIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4555566666666666666666666677777777777777665544
No 181
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=63.11 E-value=1e+02 Score=30.09 Aligned_cols=65 Identities=18% Similarity=0.248 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHH---HHHhHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 006822 335 EVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQE---QLNEMDNFIESLKESLYGAESRAESAEEKV 399 (630)
Q Consensus 335 Ev~sLqkKvksLE~qLdes~eQL~~A~aklEesE~---EVaaLerrIelLKEel~rAEsRa~tAesKl 399 (630)
++.....++..++.+++.+..||..++..++.... .+.+|...|+.|+.+...+....+.-....
T Consensus 14 ~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~ 81 (155)
T PF06810_consen 14 DIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQM 81 (155)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456667777777888888888887777766544 667778888888888776665555444433
No 182
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=63.04 E-value=3.8e+02 Score=33.35 Aligned_cols=123 Identities=24% Similarity=0.332 Sum_probs=65.5
Q ss_pred hhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHH
Q 006822 363 CFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQ 442 (630)
Q Consensus 363 klEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLq 442 (630)
.+.+...+...-.+.+++.+.+..-++.|.+.--.|++.+.+--.++-+..+ ..-.|+.
T Consensus 397 ql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~---------------------di~kQle 455 (980)
T KOG0980|consen 397 QLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYD---------------------DIQKQLE 455 (980)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHH
Confidence 3333333444444445666666666666666666666655554444433322 1112222
Q ss_pred HhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHH
Q 006822 443 QAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNR 520 (630)
Q Consensus 443 hA~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~k 520 (630)
-+..+..+. -.....+.-.+|.++....++++..|+-..+.- .|..||..+-.+++.|+..+.-
T Consensus 456 ~~~~s~~~~-------~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le-------~l~~El~~l~~e~~~lq~~~~~ 519 (980)
T KOG0980|consen 456 SAEQSIDDV-------EEENTNLNDQLEELQRAAGRAETKTESQAKALE-------SLRQELALLLIELEELQRTLSN 519 (980)
T ss_pred HHHHhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhh
Confidence 222222221 222333444556666666666666666666666 7888888888888877766433
No 183
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=62.98 E-value=1.1e+02 Score=29.34 Aligned_cols=84 Identities=15% Similarity=0.317 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhh
Q 006822 337 LTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFL 416 (630)
Q Consensus 337 ~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~L 416 (630)
++|.+-+.++=++|+...+.|..|+.. |..||+-|-.++++..+-......+...+......+...++.+
T Consensus 39 r~m~~A~~~v~kql~~vs~~l~~tKkh----------LsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v 108 (126)
T PF07889_consen 39 RSMSDAVASVSKQLEQVSESLSSTKKH----------LSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSV 108 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 367777888888888888888888765 4467777777777777777777777777777777777777766
Q ss_pred hcCCCCchhhhhhHHHHHHHH
Q 006822 417 KGNNDSNTKKVGILENQLRDL 437 (630)
Q Consensus 417 esrs~~deEK~~~LE~QLKEa 437 (630)
... +..||..|.+.
T Consensus 109 ~~~-------V~~Le~ki~~i 122 (126)
T PF07889_consen 109 QQM-------VEGLEGKIDEI 122 (126)
T ss_pred HHH-------HHHHHHHHHHH
Confidence 653 66677666554
No 184
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=62.91 E-value=3.5e+02 Score=32.86 Aligned_cols=350 Identities=21% Similarity=0.242 Sum_probs=171.7
Q ss_pred cchHHHHHHHHHHHHhhhhhhhhhHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchH--------HHH
Q 006822 208 KNADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSA--------EVL 279 (630)
Q Consensus 208 qt~eqqR~iLrMLekSla~EldLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~--------EvL 279 (630)
+|.+-||--++=|. ...| .|=-+|.+--+-.++|.-+-+++-+ .+. ...+.|.|..|.-+.- .++
T Consensus 113 k~IEaqrKaIqELQ--f~NE-~lSlKLee~i~en~dL~k~nnaTR~-lCN---lLKeT~~rsaEK~~~yE~EREET~qly 185 (786)
T PF05483_consen 113 KIIEAQRKAIQELQ--FENE-KLSLKLEEEIQENKDLRKENNATRH-LCN---LLKETCQRSAEKMKKYEYEREETRQLY 185 (786)
T ss_pred HHHHHHHHHHHHHH--Hhhh-HHhHHHHHHHhhHHHHHHhhhHHHH-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666655544 3333 0112444444445666666666555 232 3445555555544433 333
Q ss_pred hhhh---HHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHH
Q 006822 280 MGIS---KEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIR 356 (630)
Q Consensus 280 ~g~s---kel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQ 356 (630)
++.+ .-|+..+++..+.--++. -|+..||+...++...-.....+=-..++.+|.-|+-+...=|+.+++....
T Consensus 186 ~~l~~niekMi~aFEeLR~qAEn~r---~EM~fKlKE~~~k~~~leeey~~E~n~kEkqvs~L~~q~~eKen~~kdl~~~ 262 (786)
T PF05483_consen 186 MDLNENIEKMIAAFEELRVQAENDR---QEMHFKLKEDYEKFEDLEEEYKKEVNDKEKQVSLLQTQLKEKENKIKDLLLL 262 (786)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHhHHHHHHHH
Confidence 3333 345556666555433333 2566788888888877655555444445667777776666666666666655
Q ss_pred HHHhHhhh---hh-----------hHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHH-------hhh
Q 006822 357 LQNANACF---QT-----------SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEE-------INF 415 (630)
Q Consensus 357 L~~A~akl---Ee-----------sE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELere-------lk~ 415 (630)
|+...... ++ +..+.-++...+.+.|-.+-++++--..-+..+..++++-.++.++ ++-
T Consensus 263 l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K~slq~~~~tq~~le~~lq~~~k~~~qlt~eKe~~~Ee~nk 342 (786)
T PF05483_consen 263 LQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIKQSLQESESTQKALEEDLQQATKTLIQLTEEKEAQMEELNK 342 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 55443222 11 1224445555555555555555443333333333334443333332 111
Q ss_pred ------------------hhcCCCCchhhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhh
Q 006822 416 ------------------LKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVS 477 (630)
Q Consensus 416 ------------------Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~ 477 (630)
|++.-...-.|+.-+|.||+-.-.-|+.--+-.+..-. ..... +.-++.|+..|.
T Consensus 343 ~k~~~s~~v~e~qtti~~L~~lL~~Eqqr~~~~ed~lk~l~~eLqkks~eleEmtk-----~k~~k--e~eleeL~~~L~ 415 (786)
T PF05483_consen 343 AKAQHSFVVTELQTTICNLKELLTTEQQRLKKNEDQLKILTMELQKKSSELEEMTK-----QKNNK--EVELEELKKILA 415 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHH-----Hhhhh--HHHHHHHHHHHH
Confidence 11111111234444445554443333332222222221 11111 222455555554
Q ss_pred hhhhhh---hhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHH----------HHHH
Q 006822 478 KAESKT---ESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMM----------EMVM 544 (630)
Q Consensus 478 rAE~Ra---E~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~ke~tlKeae~Rak~aE----------~lV~ 544 (630)
.....+ ...|.=+--|-.++-+|.-=|......+-+|+..+..+-..+-.|.+......+-++ -...
T Consensus 416 e~qkll~ekk~~eki~E~lq~~eqel~~llq~~ekev~dLe~~l~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~n 495 (786)
T PF05483_consen 416 EKQKLLDEKKQFEKIAEELQGTEQELTGLLQIREKEVHDLEIQLTTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCN 495 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443211 122222222333344555556666777777777777777777777555554433333 2345
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHhhc
Q 006822 545 QLATQRELIQKQVYSLTSENKLLVEKLQYS 574 (630)
Q Consensus 545 KL~~ErdrLedQl~s~keenK~L~ekld~t 574 (630)
+|..|...|..+.+..+-+.|.+.+.+...
T Consensus 496 kLslEkk~laQE~~~~~~elKk~qedi~~~ 525 (786)
T PF05483_consen 496 KLSLEKKQLAQETSDMALELKKQQEDINNS 525 (786)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 666666666666666666666555554444
No 185
>smart00338 BRLZ basic region leucin zipper.
Probab=62.81 E-value=45 Score=27.38 Aligned_cols=49 Identities=18% Similarity=0.237 Sum_probs=41.1
Q ss_pred HHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006822 516 SSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSEN 564 (630)
Q Consensus 516 ~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQl~s~keen 564 (630)
.+..+.-+++..|+.+++.+....+.-...|..+++.|..++..++..+
T Consensus 15 ~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 15 EAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455677889999999999999999988888888888888888887665
No 186
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=62.50 E-value=1.6e+02 Score=29.66 Aligned_cols=78 Identities=18% Similarity=0.329 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHH
Q 006822 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSE 411 (630)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELer 411 (630)
.++.++...-..+-+..+..+.++....+.....+++++.+++.|-.|++.....-..-+.....+..+..-+..++.
T Consensus 96 ~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~ 173 (190)
T PF05266_consen 96 NKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKE 173 (190)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444445555555555555444445577777777777777776544444444333333333333333333
No 187
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=62.03 E-value=44 Score=29.94 Aligned_cols=59 Identities=20% Similarity=0.258 Sum_probs=51.0
Q ss_pred hhhHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHH
Q 006822 229 DLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEML 287 (630)
Q Consensus 229 dLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~ 287 (630)
.+++...+.+...-.+...++..++.+..|+-.-...-.++|++....+.|....+-+-
T Consensus 7 ~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~ 65 (96)
T PF08647_consen 7 SMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLN 65 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 46777777888888888999999999999999999999999999999999988866543
No 188
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=61.95 E-value=1.1e+02 Score=27.76 Aligned_cols=39 Identities=18% Similarity=0.212 Sum_probs=31.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 006822 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLL 567 (630)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLedQl~s~keenK~L 567 (630)
..++..|.++++..+..|.+..+.|+.++.......+.+
T Consensus 69 ~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 69 IQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688888999998888888888888888887776665543
No 189
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=61.88 E-value=4.2e+02 Score=33.49 Aligned_cols=133 Identities=14% Similarity=0.199 Sum_probs=68.3
Q ss_pred HhhhhHHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhcC----C------hhHHHHHHHHHHHHHH
Q 006822 279 LMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLEST----K------NSEVLTMKEKVKSLEE 348 (630)
Q Consensus 279 L~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s----~------esEv~sLqkKvksLE~ 348 (630)
.-.+.++..+.|.-+.-+-+.+..+=...++.+....+....-++.+-.|+.+ . ..+-....+|-..||-
T Consensus 228 YdrEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel 307 (1200)
T KOG0964|consen 228 YDRELNEINGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLEL 307 (1200)
T ss_pred hhhHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 34567888888888888777777776666666666655544444433333332 0 0111111222333333
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhc
Q 006822 349 QLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKG 418 (630)
Q Consensus 349 qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Les 418 (630)
+.+..+.|+.-- .+.-...-+.++.+++++...+..+...+-|...+.+...-+..-+..|++
T Consensus 308 ~~kdlq~~i~~n-------~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~ 370 (1200)
T KOG0964|consen 308 KIKDLQDQITGN-------EQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQ 370 (1200)
T ss_pred hhHHHHHHhhhh-------hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHH
Confidence 344333333221 111122334455556666666666666666666666666555555555554
No 190
>PRK11281 hypothetical protein; Provisional
Probab=61.80 E-value=4.3e+02 Score=33.55 Aligned_cols=58 Identities=14% Similarity=0.073 Sum_probs=47.5
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccch
Q 006822 244 LKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSL 301 (630)
Q Consensus 244 Lk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~ 301 (630)
|..+|...++...........+...+....+..|--+....+.+.|+|.+...|++..
T Consensus 126 LEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~ 183 (1113)
T PRK11281 126 LESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGK 183 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 5555555566666677778888899999999999999999999999999999998843
No 191
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=61.56 E-value=2.3e+02 Score=34.11 Aligned_cols=116 Identities=26% Similarity=0.357 Sum_probs=84.3
Q ss_pred ccchHHHHHHHH--HHH-HhhhhhhhhhHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhh
Q 006822 207 MKNADQQRHILR--MLE-KSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGIS 283 (630)
Q Consensus 207 mqt~eqqR~iLr--MLe-kSla~EldLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~s 283 (630)
.+.--|--.+|| -+. .-+|++ .+++...-....-+.--.+|....+++..+.+.++.+-+|+-+|..--+.|+--.
T Consensus 538 l~lL~~a~~vlreeYi~~~~~ar~-ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~ 616 (717)
T PF10168_consen 538 LELLSQATKVLREEYIEKQDLARE-EIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRV 616 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455665 222 334443 5677777777766777778999999999999999999999999999999999988
Q ss_pred HHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHH
Q 006822 284 KEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQ 326 (630)
Q Consensus 284 kel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~le 326 (630)
+.++.+++ ..+-....-|.+.+..|+....++.+-...++
T Consensus 617 ~~vl~~l~---~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~ 656 (717)
T PF10168_consen 617 DRVLQLLN---SQLPVLSEAEREFKKELERMKDQLQDLKASIE 656 (717)
T ss_pred HHHHHHHh---ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888775 44566666788888888887777654443333
No 192
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=61.23 E-value=2.4e+02 Score=30.38 Aligned_cols=54 Identities=19% Similarity=0.284 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHh
Q 006822 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYG 387 (630)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~r 387 (630)
.|+-.+.++++..|+.+++...++....+.+-..+.+-+.|..+|..++.+|.+
T Consensus 207 ~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~k 260 (269)
T PF05278_consen 207 EELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEK 260 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555444444455555555555544443
No 193
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=60.91 E-value=88 Score=31.30 Aligned_cols=89 Identities=21% Similarity=0.334 Sum_probs=57.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHH
Q 006822 332 KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSE 411 (630)
Q Consensus 332 ~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELer 411 (630)
+......++.++..|..++......+. .+...|+..+..-...++|.. ...++..|.+...+|..
T Consensus 60 ps~~~~~~~~~~~~l~~~~~~~~~~i~--------------~l~~~i~~~~~~r~~~~eR~~-~l~~l~~l~~~~~~l~~ 124 (188)
T PF03962_consen 60 PSQAKQKRQNKLEKLQKEIEELEKKIE--------------ELEEKIEEAKKGREESEEREE-LLEELEELKKELKELKK 124 (188)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHhcccccHHHHH-HHHHHHHHHHHHHHHHH
Confidence 556666666666666666555544444 444445555555555566655 67788888888888888
Q ss_pred HhhhhhcCCCCchhhhhhHHHHHHHHH
Q 006822 412 EINFLKGNNDSNTKKVGILENQLRDLE 438 (630)
Q Consensus 412 elk~Lesrs~~deEK~~~LE~QLKEa~ 438 (630)
++..+... |-+++..+...+..++
T Consensus 125 el~~~~~~---Dp~~i~~~~~~~~~~~ 148 (188)
T PF03962_consen 125 ELEKYSEN---DPEKIEKLKEEIKIAK 148 (188)
T ss_pred HHHHHHhc---CHHHHHHHHHHHHHHH
Confidence 88855554 5577777776666554
No 194
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=60.90 E-value=3e+02 Score=31.39 Aligned_cols=48 Identities=15% Similarity=0.265 Sum_probs=19.7
Q ss_pred HHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhc
Q 006822 371 LNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKG 418 (630)
Q Consensus 371 VaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Les 418 (630)
.+.|+.-|..++.++...+.-+-.+...+..+.+-...++..++.|+.
T Consensus 61 ~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~ 108 (420)
T COG4942 61 RAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEV 108 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHH
Confidence 333333344444444333333333334444444444444444444444
No 195
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=60.61 E-value=2.5e+02 Score=30.43 Aligned_cols=78 Identities=21% Similarity=0.329 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHH
Q 006822 391 RAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIE 470 (630)
Q Consensus 391 Ra~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIE 470 (630)
+..++...+-+.-+..-|++.++. + .+..+|.+++.+...-|.-+.-.+..+++|..-|..-.+-+.+.+
T Consensus 28 ~f~~~reEl~EFQegSrE~Eaele---s-------qL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Le 97 (333)
T KOG1853|consen 28 HFLQMREELNEFQEGSREIEAELE---S-------QLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLE 97 (333)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHH---H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555543 2 367777778877777777777777777777766666666666666
Q ss_pred HHhhhhhhhhh
Q 006822 471 DLKSKVSKAES 481 (630)
Q Consensus 471 dLk~Kl~rAE~ 481 (630)
.++++.-.
T Consensus 98 ---ddlsqt~a 105 (333)
T KOG1853|consen 98 ---DDLSQTHA 105 (333)
T ss_pred ---HHHHHHHH
Confidence 66664443
No 196
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=60.56 E-value=1.9e+02 Score=29.14 Aligned_cols=44 Identities=16% Similarity=0.182 Sum_probs=26.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh
Q 006822 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQ 572 (630)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLedQl~s~keenK~L~ekld 572 (630)
+..++....-....|.+|...+.+|+.+|...+-+-..|.-...
T Consensus 101 ~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~ 144 (219)
T TIGR02977 101 AEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQ 144 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555556666666666667777776666666555544443
No 197
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=60.52 E-value=2.1e+02 Score=29.58 Aligned_cols=61 Identities=18% Similarity=0.263 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHH
Q 006822 377 FIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQL 441 (630)
Q Consensus 377 rIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QL 441 (630)
.+..+..++..++..+..|..++.. +..+++|-.+.++. +.....-++..+.++..++.++
T Consensus 102 ~~~~~~~~i~~~~~~~~~a~~~l~~---a~~~~~r~~~L~~~-g~is~~~~~~a~~~~~~a~~~l 162 (334)
T TIGR00998 102 TVQQLQAKVESLKIKLEQAREKLLQ---AELDLRRRVPLFKK-GLISREELDHARKALLSAKAAL 162 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHC-CCcCHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444332 34455555543433 3323233333333444443333
No 198
>PRK00846 hypothetical protein; Provisional
Probab=60.03 E-value=55 Score=28.98 Aligned_cols=49 Identities=14% Similarity=0.036 Sum_probs=44.2
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC
Q 006822 527 ASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (630)
Q Consensus 527 ~tlKeae~Rak~aE~lV~KL~~ErdrLedQl~s~keenK~L~ekld~tk 575 (630)
..+-++++|.-|-+++|..|...+=+.+.+|..++...+.|.++++...
T Consensus 13 ~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 13 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3477889999999999999999999999999999999999999999876
No 199
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=59.73 E-value=1.3e+02 Score=26.92 Aligned_cols=38 Identities=18% Similarity=0.227 Sum_probs=32.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 006822 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKL 566 (630)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLedQl~s~keenK~ 566 (630)
...++.|.++++.-+.++....+.++.++..++.+.+.
T Consensus 65 ~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 65 RTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888999999999999999999998888877654
No 200
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=59.42 E-value=1.8e+02 Score=33.54 Aligned_cols=21 Identities=10% Similarity=0.192 Sum_probs=12.8
Q ss_pred hHHhHHHHHHHHHhhhhcccc
Q 006822 108 ELREVERLLDTIHVEIVNVHH 128 (630)
Q Consensus 108 Ev~ele~~~~~lq~~I~~~~~ 128 (630)
.+.+|=+|++.-...|.+.+-
T Consensus 87 t~~Dll~F~~~~~~~I~~iri 107 (493)
T KOG0804|consen 87 TSHDLLRFCASFIKQISDIRI 107 (493)
T ss_pred cHHHHHHHHHHHhhhhheeEE
Confidence 345556677766666666554
No 201
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=59.01 E-value=1.2e+02 Score=26.23 Aligned_cols=67 Identities=18% Similarity=0.275 Sum_probs=41.8
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhHHHHhh-------------------------HHHHHHhHHHHHHHHHHHHHHHHHH
Q 006822 499 ELKNKQSFMRDKIKILESSLNRANIEKAAS-------------------------AKEVNHRTKLMMEMVMQLATQRELI 553 (630)
Q Consensus 499 ELeEEL~~l~~~lksLE~sl~kA~q~ke~t-------------------------lKeae~Rak~aE~lV~KL~~ErdrL 553 (630)
.|..++..+...+..|+..+..+....++- .+.+..+.+.++.-+.+|...+..+
T Consensus 9 ~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l 88 (106)
T PF01920_consen 9 ELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYL 88 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666665554433332 6666667777777777777777776
Q ss_pred HHHHHHHHHhhh
Q 006822 554 QKQVYSLTSENK 565 (630)
Q Consensus 554 edQl~s~keenK 565 (630)
..++..++..++
T Consensus 89 ~~~l~~~~~~l~ 100 (106)
T PF01920_consen 89 EKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666665544
No 202
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=58.73 E-value=2.6e+02 Score=29.97 Aligned_cols=63 Identities=16% Similarity=0.317 Sum_probs=33.5
Q ss_pred hhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhh
Q 006822 328 LESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAES 390 (630)
Q Consensus 328 l~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEs 390 (630)
++.....++..++..+..+..++......+...+..+....+.+.+++..+..+..+|..|+.
T Consensus 203 ~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~ 265 (325)
T PF08317_consen 203 IESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEK 265 (325)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344566666666666655555555555555555555555555555555555555554443
No 203
>PF15456 Uds1: Up-regulated During Septation
Probab=58.19 E-value=1.5e+02 Score=28.19 Aligned_cols=74 Identities=24% Similarity=0.339 Sum_probs=50.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHH------HhHhh------------------hhhhHHHHHhHHHHHHHHHHHHHh
Q 006822 332 KNSEVLTMKEKVKSLEEQLKESEIRLQ------NANAC------------------FQTSQEQLNEMDNFIESLKESLYG 387 (630)
Q Consensus 332 ~esEv~sLqkKvksLE~qLdes~eQL~------~A~ak------------------lEesE~EVaaLerrIelLKEel~r 387 (630)
+-+||..|.+.++.|...++-....+. +|-.+ ....+++++..+++|+++-.++.+
T Consensus 20 s~eEVe~LKkEl~~L~~R~~~lr~kl~le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~~eL~~ 99 (124)
T PF15456_consen 20 SFEEVEELKKELRSLDSRLEYLRRKLALESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELAQELWK 99 (124)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 356666666666666666665554432 11111 222377999999999999999999
Q ss_pred hhhhHHHHHHHHHHHhhh
Q 006822 388 AESRAESAEEKVTQLTDT 405 (630)
Q Consensus 388 AEsRa~tAesKle~LseT 405 (630)
+|.|+.....++=+=+-+
T Consensus 100 le~R~~~~~~rLLeH~Aa 117 (124)
T PF15456_consen 100 LENRLAEVRQRLLEHTAA 117 (124)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999888887554433
No 204
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=58.00 E-value=2.4e+02 Score=29.32 Aligned_cols=19 Identities=21% Similarity=0.399 Sum_probs=10.8
Q ss_pred hhhHHHHHHHHHHHHHHhH
Q 006822 427 VGILENQLRDLEIQLQQAK 445 (630)
Q Consensus 427 ~~~LE~QLKEa~~QLqhA~ 445 (630)
+..||.++.+.+.+.+-.+
T Consensus 122 ~~~Le~Ki~e~~~~~~~l~ 140 (225)
T COG1842 122 LAALEQKIAELRAKKEALK 140 (225)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5556666666655554444
No 205
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.54 E-value=4.6e+02 Score=32.52 Aligned_cols=133 Identities=22% Similarity=0.249 Sum_probs=78.1
Q ss_pred hhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHH
Q 006822 426 KVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQS 505 (630)
Q Consensus 426 K~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~ 505 (630)
|...|+..|...+..+..++...+.-..+-..-.++|..+-+-|.+++.++.+- +-.-.+|+..|+
T Consensus 452 k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l--------------~~Ekq~l~~qlk 517 (1118)
T KOG1029|consen 452 KLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKL--------------APEKQELNHQLK 517 (1118)
T ss_pred HHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhh--------------hhHHHHHHHHHH
Confidence 455666666666555666666665554433335668888888888888887642 233336777777
Q ss_pred HHHhhHHHH---HHHHHHHhHHHHhh-----------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 006822 506 FMRDKIKIL---ESSLNRANIEKAAS-----------AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKL 571 (630)
Q Consensus 506 ~l~~~lksL---E~sl~kA~q~ke~t-----------lKeae~Rak~aE~lV~KL~~ErdrLedQl~s~keenK~L~ekl 571 (630)
.+.+..+.- ...|+++...|+.. -||++....-|.-.-.||..=++.+..|+....+.||+=-+++
T Consensus 518 q~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n~qlkelk~~~~~q~lake~~yk~e~d~~ 597 (1118)
T KOG1029|consen 518 QKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELKEDVNSQQLAKEELYKNERDKL 597 (1118)
T ss_pred HhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766554321 23455555555544 3444444444555556666666666666666666666554554
Q ss_pred h
Q 006822 572 Q 572 (630)
Q Consensus 572 d 572 (630)
+
T Consensus 598 k 598 (1118)
T KOG1029|consen 598 K 598 (1118)
T ss_pred H
Confidence 4
No 206
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=57.23 E-value=44 Score=28.32 Aligned_cols=47 Identities=19% Similarity=0.217 Sum_probs=37.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC
Q 006822 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (630)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLedQl~s~keenK~L~ekld~tk 575 (630)
+-++++|.-|.+++|.+|...+=+-+.+|..+....+.|.+++....
T Consensus 6 i~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 6 IEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56788899999999999999999999999999999999988888765
No 207
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=57.10 E-value=1e+02 Score=31.41 Aligned_cols=90 Identities=18% Similarity=0.217 Sum_probs=57.7
Q ss_pred HHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 006822 323 MVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQL 402 (630)
Q Consensus 323 ~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~L 402 (630)
.-|..+.-.+-+++..+-+-|-.||+.+|..++++.+--..+.+.++.-.++.+.+.-+|.+|-.-+.+++.-..=++--
T Consensus 61 kYLe~lNlPSr~DiarvA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~llE~~ 140 (189)
T TIGR02132 61 NYLEQVNVPTKEDIANVASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILELLEGQ 140 (189)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34555555567889999999999999999999998886666665544444555555555555555555554444444433
Q ss_pred hhhhHHHHHH
Q 006822 403 TDTNLELSEE 412 (630)
Q Consensus 403 seTNdELere 412 (630)
-+|-|||++-
T Consensus 141 ~~~~~~~~~~ 150 (189)
T TIGR02132 141 QKTQDELKET 150 (189)
T ss_pred ccchhHHHHH
Confidence 4555555543
No 208
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=56.00 E-value=5.3e+02 Score=32.75 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=23.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006822 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTS 562 (630)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLedQl~s~ke 562 (630)
.+....+.+.++..+--|..|...|.+||.+++.
T Consensus 525 ye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 525 YELLSNKLEELEELLGNLEEENAHLLKQIQSLKT 558 (1195)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 5556666666666666777777777777766665
No 209
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=55.84 E-value=75 Score=30.57 Aligned_cols=84 Identities=19% Similarity=0.279 Sum_probs=42.9
Q ss_pred HHHhHHHHHhhhhHHHHHhhcC--------------ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHH--HHHh
Q 006822 310 KLGDFIEQLKAKDMVLQKLEST--------------KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQE--QLNE 373 (630)
Q Consensus 310 KL~~~~eqL~~k~~~lekl~~s--------------~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~--EVaa 373 (630)
-...++++|...+....|.-+. +++|+..|...+..|.+++...........+.+-...+ ....
T Consensus 34 ~v~k~Ld~L~~~g~i~~K~~GKqkiY~~~Q~~~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~e 113 (169)
T PF07106_consen 34 AVQKALDSLVEEGKIVEKEYGKQKIYFANQDELEVPSPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEE 113 (169)
T ss_pred HHHHHHHHHHhCCCeeeeeecceEEEeeCccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 3445566666555444443332 35566666666666666666666655555444433222 2224
Q ss_pred HHHHHHHHHHHHHhhhhhHH
Q 006822 374 MDNFIESLKESLYGAESRAE 393 (630)
Q Consensus 374 LerrIelLKEel~rAEsRa~ 393 (630)
|...|..|+.++..-++|+.
T Consensus 114 l~~~i~~l~~e~~~l~~kL~ 133 (169)
T PF07106_consen 114 LREEIEELEEEIEELEEKLE 133 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44445555555444444443
No 210
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=55.62 E-value=3.3e+02 Score=30.24 Aligned_cols=82 Identities=17% Similarity=0.169 Sum_probs=54.6
Q ss_pred HHHHHhhHHHHHHHHHHHhHHHHhh--------HHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhc
Q 006822 504 QSFMRDKIKILESSLNRANIEKAAS--------AKEVNHR-TKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYS 574 (630)
Q Consensus 504 L~~l~~~lksLE~sl~kA~q~ke~t--------lKeae~R-ak~aE~lV~KL~~ErdrLedQl~s~keenK~L~ekld~t 574 (630)
+..+.+.+..++..+.++....... ..++..| ..+..+-......+++.++.++.............++.+
T Consensus 238 ~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l~~a~~~l~~~ 317 (457)
T TIGR01000 238 LATIQQQIDQLQKSIASYQVQKAGLTKSTASNYASSQNSKLAQLKEQQLAKVKQEITDLNQKLLELESKIKSLKEDSQKG 317 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3344444455555554444433331 2233334 444555666778888999999999999999999999999
Q ss_pred CCCCcceeccC
Q 006822 575 GKSSSATMYNA 585 (630)
Q Consensus 575 kk~~~~~~~~~ 585 (630)
..-+||+-+..
T Consensus 318 ~I~AP~dG~V~ 328 (457)
T TIGR01000 318 VIKAPEDGVLH 328 (457)
T ss_pred EEECCCCeEEE
Confidence 99999876665
No 211
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=54.37 E-value=4e+02 Score=30.81 Aligned_cols=153 Identities=16% Similarity=0.178 Sum_probs=77.9
Q ss_pred HHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhHhhh
Q 006822 369 EQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSS 448 (630)
Q Consensus 369 ~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asa 448 (630)
.++.=|+|++++|+.+---|..|....-+....|.. |+..||.|+|+.+....+ +++
T Consensus 222 ~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvh---------------------R~h~LEEq~reqElraeE--~l~ 278 (502)
T KOG0982|consen 222 RKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVH---------------------RYHMLEEQRREQELRAEE--SLS 278 (502)
T ss_pred HHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHH---------------------HHHHHHHHHHhhhhhHHH--HHH
Confidence 355566667777777766677666666666665554 455666666665522221 233
Q ss_pred HhHHHHHhhhHHHHHhHH-HHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHh
Q 006822 449 EASQEQQSMLYSAIWDME-TLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAA 527 (630)
Q Consensus 449 Eas~eqQ~mkysei~dme-~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~ke~ 527 (630)
+..++ |...|-.+.|-- ..+| ..+.++-.|.+.|-+|-..+.-+++.+.-|..-.++.++.=+.
T Consensus 279 Ee~rr-hrEil~k~eReasle~E--------------nlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~ 343 (502)
T KOG0982|consen 279 EEERR-HREILIKKEREASLEKE--------------NLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEA 343 (502)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 33333 223333332211 2222 2333344555555566555555555555555444444443333
Q ss_pred h-----------------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006822 528 S-----------------AKEVNHRTKLMMEMVMQLATQRELIQKQVYS 559 (630)
Q Consensus 528 t-----------------lKeae~Rak~aE~lV~KL~~ErdrLedQl~s 559 (630)
+ +---..+.+....++-.|-++.++|+-.+..
T Consensus 344 lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELieelrkelehlr~~kl~ 392 (502)
T KOG0982|consen 344 LRLQLICEQKLRVRMNDILRRFQEEKEATQELIEELRKELEHLRRRKLV 392 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 2223334566666777777777766655443
No 212
>PRK00295 hypothetical protein; Provisional
Probab=54.06 E-value=58 Score=27.75 Aligned_cols=47 Identities=13% Similarity=0.099 Sum_probs=41.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC
Q 006822 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (630)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLedQl~s~keenK~L~ekld~tk 575 (630)
+-+++.|.-|-+++|..|...+=+.+.+|..+....+.|.+.+....
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 67889999999999999999999999999999999999988888764
No 213
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=53.70 E-value=1.7e+02 Score=34.77 Aligned_cols=70 Identities=21% Similarity=0.330 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh---HHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh
Q 006822 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS---QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLT 403 (630)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~aklEes---E~EVaaLerrIelLKEel~rAEsRa~tAesKle~Ls 403 (630)
.|++.|..++..+...+..+..+|..+....... .-++..++++|..|+-++.+..++.+.-..++..+-
T Consensus 436 ~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 436 EENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677777777777777777777666655433 448888999999999888888887777666666553
No 214
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=52.79 E-value=3.6e+02 Score=29.91 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=10.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHhHH
Q 006822 500 LKNKQSFMRDKIKILESSLNRANIE 524 (630)
Q Consensus 500 LeEEL~~l~~~lksLE~sl~kA~q~ 524 (630)
..++|...+.++..+++.+.++...
T Consensus 289 ~~~~l~~~~~~l~~~~~~l~~a~~~ 313 (457)
T TIGR01000 289 VKQEITDLNQKLLELESKIKSLKED 313 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433
No 215
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=52.67 E-value=2.9e+02 Score=28.75 Aligned_cols=61 Identities=15% Similarity=0.221 Sum_probs=49.3
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcC----CCCchhhhh
Q 006822 368 QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGN----NDSNTKKVG 428 (630)
Q Consensus 368 E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesr----s~~deEK~~ 428 (630)
=+.|..|.+.|..++..+..+..++..|-.....+...=..+.|+++.|=.| +..|-+|--
T Consensus 31 Ys~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqRK~sWs~~DleRFT 95 (207)
T PF05546_consen 31 YSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQRKHSWSPADLERFT 95 (207)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHH
Confidence 4578888888888888999998999999888888888888899999988888 444545443
No 216
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=52.60 E-value=2.9e+02 Score=28.70 Aligned_cols=54 Identities=24% Similarity=0.307 Sum_probs=40.4
Q ss_pred hhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhh
Q 006822 426 KVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKA 479 (630)
Q Consensus 426 K~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rA 479 (630)
.-.+|+--+++.+.+|..|+..+...-..|.-++..+.+....++++..+..-|
T Consensus 25 p~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~A 78 (225)
T COG1842 25 PEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELA 78 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347888899999999999987777665556667778888888888666655443
No 217
>PRK00736 hypothetical protein; Provisional
Probab=51.83 E-value=77 Score=27.04 Aligned_cols=47 Identities=17% Similarity=0.097 Sum_probs=42.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC
Q 006822 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (630)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLedQl~s~keenK~L~ekld~tk 575 (630)
+-+++.|.-|-+++|..|...+=+-+.+|..++..-+.|.+++....
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77889999999999999999999999999999999999999998753
No 218
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=51.75 E-value=58 Score=28.27 Aligned_cols=47 Identities=17% Similarity=0.229 Sum_probs=39.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC
Q 006822 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (630)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLedQl~s~keenK~L~ekld~tk 575 (630)
+..++.|..-+-++++-|+.+++.|..+-.++.++|..|..+..+.+
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 56778888888899999999999999998888888888887777665
No 219
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=51.43 E-value=6.2e+02 Score=32.20 Aligned_cols=41 Identities=7% Similarity=-0.034 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC
Q 006822 535 RTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (630)
Q Consensus 535 Rak~aE~lV~KL~~ErdrLedQl~s~keenK~L~ekld~tk 575 (630)
+.+-...++.-=..+..||+..+.-+++.|+-....+..++
T Consensus 489 ~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~ 529 (1195)
T KOG4643|consen 489 QIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLS 529 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455666666666666666666555444443
No 220
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=51.27 E-value=1.7e+02 Score=26.57 Aligned_cols=76 Identities=21% Similarity=0.375 Sum_probs=37.8
Q ss_pred hhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHH------HHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhH
Q 006822 427 VGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDME------TLIEDLKSKVSKAESKTESVEEQCIVLSEDNFEL 500 (630)
Q Consensus 427 ~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme------~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~EL 500 (630)
...|+.+++|.+.=+..=....+++. -|--|-++. .++.+|+.... ..+..+. .|
T Consensus 26 ~~~le~~~~E~~~v~~eL~~l~~d~~-----vyk~VG~vlv~~~~~e~~~~l~~r~e-------~ie~~i~-------~l 86 (110)
T TIGR02338 26 KQQVEAQLKEAEKALEELERLPDDTP-----VYKSVGNLLVKTDKEEAIQELKEKKE-------TLELRVK-------TL 86 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcch-----hHHHhchhhheecHHHHHHHHHHHHH-------HHHHHHH-------HH
Confidence 44555555555433332223332322 255444443 44444444444 4444455 56
Q ss_pred HHHHHHHHhhHHHHHHHHHHH
Q 006822 501 KNKQSFMRDKIKILESSLNRA 521 (630)
Q Consensus 501 eEEL~~l~~~lksLE~sl~kA 521 (630)
++.+..++.+++.++.++.++
T Consensus 87 ek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 87 QRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666666777777666666554
No 221
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=51.09 E-value=1.1e+02 Score=25.11 Aligned_cols=48 Identities=23% Similarity=0.293 Sum_probs=38.3
Q ss_pred HHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006822 517 SLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSEN 564 (630)
Q Consensus 517 sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQl~s~keen 564 (630)
+..+.-+++..|+.+++.+....+.-...|..+++.|..++..+..+|
T Consensus 16 AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 16 AARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345667888889999988888888888888888888888888777665
No 222
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=51.08 E-value=40 Score=36.26 Aligned_cols=76 Identities=13% Similarity=0.336 Sum_probs=63.1
Q ss_pred HHHHHhhhhhhhhHHhHHHHHHHHHhhhhcccceeccccchhhHHHHHHHhHhhhhhhHhhHHHHHHHHHHHHHhhHhhh
Q 006822 96 LVYDLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQ 175 (630)
Q Consensus 96 ~efDlL~gildsEv~ele~~~~~lq~~I~~~~~~~~s~~~~~~~f~~~~~~~~kL~~~~~sLkq~qe~~~ei~~qsa~f~ 175 (630)
-.+++|+++||.-|.-+-..+..+..+|.+.++.|.+-.+ +. .+.+.-.++.+.++.++.+|.-...++
T Consensus 128 ~~~~vl~~Lld~iVd~~ad~lE~~~~~ld~ls~~if~~~~-~~----------~~~~~l~~i~~l~~~~~~~r~~l~~~~ 196 (316)
T PRK11085 128 NAYELLLDLFETKIEQLADEIENIYSDLEKLSRVIMEGHQ-GD----------EYDEALSTLAELEDIGWKVRLCLMDTQ 196 (316)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCC-ch----------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3489999999999999999999999999999999876432 11 234444779999999999999999999
Q ss_pred hhhhhcc
Q 006822 176 RVLSYFI 182 (630)
Q Consensus 176 r~~~~~~ 182 (630)
|++.++.
T Consensus 197 r~l~~l~ 203 (316)
T PRK11085 197 RALNFLV 203 (316)
T ss_pred HHHHHHh
Confidence 9998865
No 223
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=50.16 E-value=3.6e+02 Score=29.08 Aligned_cols=80 Identities=21% Similarity=0.325 Sum_probs=57.6
Q ss_pred hhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHH-----------------HHHHHHHHHHH
Q 006822 489 QCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMM-----------------EMVMQLATQRE 551 (630)
Q Consensus 489 Kc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~ke~tlKeae~Rak~aE-----------------~lV~KL~~Erd 551 (630)
+|..++++-.+|...|..|..+.+..+..+.+.|+.=..|=+|++.-++-+. ..+..+..++.
T Consensus 203 ~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~ 282 (309)
T PF09728_consen 203 QVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQ 282 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 7888888999999999999999999999999999988888555555444333 33445555555
Q ss_pred HHHHHHHHHHHhhhHHH
Q 006822 552 LIQKQVYSLTSENKLLV 568 (630)
Q Consensus 552 rLedQl~s~keenK~L~ 568 (630)
.+..++-..+.+...|.
T Consensus 283 ~~~~~~~~~~~k~~kLe 299 (309)
T PF09728_consen 283 KLEKELEKLKKKIEKLE 299 (309)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555555554443
No 224
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.85 E-value=95 Score=35.38 Aligned_cols=72 Identities=29% Similarity=0.327 Sum_probs=49.8
Q ss_pred HHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhh
Q 006822 396 EEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSK 475 (630)
Q Consensus 396 esKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk~K 475 (630)
+...+.+-+--..++|+++.|+-+.+ .---...||++.+-++ |++.. +.+-+.-|+.-|++||.|
T Consensus 106 eqertq~qq~~e~~erEv~~l~~lls-r~~~~~~Lenem~ka~----------Ed~eK----lrelv~pmekeI~elk~k 170 (542)
T KOG0993|consen 106 EQERTQLQQNEEKLEREVKALMELLS-RGQYQLDLENEMDKAK----------EDEEK----LRELVTPMEKEINELKKK 170 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhhhhHHHHHHHH----------hhHHH----HHHHHhhHHHHHHHHHHH
Confidence 34444555555667788777765532 0013567888877665 45555 667788999999999999
Q ss_pred hhhhhhh
Q 006822 476 VSKAESK 482 (630)
Q Consensus 476 l~rAE~R 482 (630)
+.+||.|
T Consensus 171 l~~aE~~ 177 (542)
T KOG0993|consen 171 LAKAEQR 177 (542)
T ss_pred HHhHHHH
Confidence 9999988
No 225
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=49.60 E-value=3e+02 Score=30.39 Aligned_cols=98 Identities=20% Similarity=0.285 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhhHHH-----HHhHHHHHHHH------HHHHHhhhhhHHHHHHHHHHHhhhhHHHH
Q 006822 342 KVKSLEEQLKESEIRLQNANACFQTSQEQ-----LNEMDNFIESL------KESLYGAESRAESAEEKVTQLTDTNLELS 410 (630)
Q Consensus 342 KvksLE~qLdes~eQL~~A~aklEesE~E-----VaaLerrIelL------KEel~rAEsRa~tAesKle~LseTNdELe 410 (630)
++...+.+++....++..+++.++..++. ..+++|+-.+. .++++.|..-...|..-+.... ...+
T Consensus 99 ~la~a~~~~~~~~a~~~~~~A~i~~a~a~~l~~a~~~~~R~~~L~~~g~vs~~~~~~a~~a~~~A~A~~~~a~---~~~~ 175 (352)
T COG1566 99 ALAAAEAQLRNLRAQLASAQALIAQAEAQDLDQAQNELERRAELAQRGVVSREELDRARAALQAAEAALAAAQ---AAQK 175 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhH---HHHH
Confidence 34444444444444444444444333332 33667777776 5666666666666666665544 3334
Q ss_pred HHhhhhhcCCCCchhhhhhHHHHHHHHHHHHH
Q 006822 411 EEINFLKGNNDSNTKKVGILENQLRDLEIQLQ 442 (630)
Q Consensus 411 relk~Lesrs~~deEK~~~LE~QLKEa~~QLq 442 (630)
..+..|.+.-......+..++.+++.++..|+
T Consensus 176 ~~~~~l~~~~~~~~~~v~~a~a~~~~A~l~L~ 207 (352)
T COG1566 176 QNLALLESEVSGAQAQVASAEAALDQAKLDLE 207 (352)
T ss_pred HHHHHHhhhhccchhHHHHHHHHHHHHHHHhh
Confidence 44555555433334444555555555544444
No 226
>PRK04325 hypothetical protein; Provisional
Probab=49.57 E-value=73 Score=27.60 Aligned_cols=47 Identities=13% Similarity=0.184 Sum_probs=42.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC
Q 006822 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (630)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLedQl~s~keenK~L~ekld~tk 575 (630)
+-+++.|.-|-+++|..|...+=+-+.+|..++...+.|.++++...
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77889999999999999999999999999999999999999998763
No 227
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=49.28 E-value=4.1e+02 Score=29.53 Aligned_cols=89 Identities=21% Similarity=0.183 Sum_probs=55.8
Q ss_pred HHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhc-------C-----ChhH
Q 006822 268 RFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLES-------T-----KNSE 335 (630)
Q Consensus 268 r~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~-------s-----~esE 335 (630)
+-|=.+...+.|++..+.-++.++.++..+.+...+=.....+++..+ ...+-.....+.. + +.+=
T Consensus 116 ~DFVd~~~v~~L~~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 193 (412)
T PF04108_consen 116 YDFVDEDSVEILRENLKISIDELQAIQEQLDNSLLQFDNDLRKLKKQL--INKRLKDYELLAPFQSSLGSSPSSSSSNPL 193 (412)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--hhhhhhhhhhccccccccCCCCCccccccc
Confidence 446677788999999999999999999999998887666666666655 1222111221110 0 0233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 006822 336 VLTMKEKVKSLEEQLKESEIRLQ 358 (630)
Q Consensus 336 v~sLqkKvksLE~qLdes~eQL~ 358 (630)
...+-+-+.+||.++...-+.|.
T Consensus 194 ~~~i~~~l~~le~ema~lL~sLt 216 (412)
T PF04108_consen 194 MSTILKELHSLEQEMASLLESLT 216 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666677766666555544
No 228
>PTZ00464 SNF-7-like protein; Provisional
Probab=48.46 E-value=1.4e+02 Score=30.64 Aligned_cols=73 Identities=7% Similarity=0.150 Sum_probs=51.5
Q ss_pred hhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 006822 477 SKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQ 556 (630)
Q Consensus 477 ~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQ 556 (630)
.+-+.|.+.++.|+- .++.|+..++..++..-. .+....-..|+-+-.|.+..|....++......|+.+
T Consensus 21 ~~l~~r~~~l~kKi~-------~ld~E~~~ak~~~k~~~~---~~~~~~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~ 90 (211)
T PTZ00464 21 KRIGGRSEVVDARIN-------KIDAELMKLKEQIQRTRG---MTQSRHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQL 90 (211)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhcc---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566667777776 788888888877764322 2333334457778888999999888888888888877
Q ss_pred HHH
Q 006822 557 VYS 559 (630)
Q Consensus 557 l~s 559 (630)
+++
T Consensus 91 ~~~ 93 (211)
T PTZ00464 91 QFT 93 (211)
T ss_pred HHH
Confidence 665
No 229
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=48.39 E-value=2.7e+02 Score=27.05 Aligned_cols=109 Identities=19% Similarity=0.252 Sum_probs=63.5
Q ss_pred HHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHH--------------HHHhHhhhhhhHHHHH
Q 006822 307 LKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIR--------------LQNANACFQTSQEQLN 372 (630)
Q Consensus 307 l~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQ--------------L~~A~aklEesE~EVa 372 (630)
++..+.....||..++..-+-||-. ++-.|+-...++-..+++=+.. |.+.+.++-....+..
T Consensus 18 lk~~l~k~~~ql~~ke~lge~L~~i---DFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~ 94 (177)
T PF13870_consen 18 LKHQLAKLEEQLRQKEELGEGLHLI---DFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELE 94 (177)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666655544444432 3333333333333333332222 4445555555566777
Q ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhc
Q 006822 373 EMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKG 418 (630)
Q Consensus 373 aLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Les 418 (630)
.+...|...++.+.+....+..+...+..+...+..+......+..
T Consensus 95 ~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~ 140 (177)
T PF13870_consen 95 RLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGV 140 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 7777777777777777777777777777777777777666665544
No 230
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=47.78 E-value=7.5e+02 Score=32.12 Aligned_cols=128 Identities=21% Similarity=0.207 Sum_probs=81.6
Q ss_pred HHHhHhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhhcccCCCcccccccccCCcccccccccccchHHHHHHHHHHHH
Q 006822 143 MEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFIHGNNDEALEFSANGQLSNINGKSKMKNADQQRHILRMLEK 222 (630)
Q Consensus 143 ~~~~~~kL~~~~~sLkq~qe~~~ei~~qsa~f~r~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~mqt~eqqR~iLrMLek 222 (630)
|.++.........++....-.+...++..-.+.|.++...+-.. -+++...-++.
T Consensus 821 ~~E~~~Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~~l~~~~~-------------------------e~k~~~~~~~~ 875 (1294)
T KOG0962|consen 821 VDELRKEKSKKQESLDKLRKEIECLQKEVIEQEREISRLINLRN-------------------------ELKEEKQKIER 875 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHH
Confidence 44557777777888888888888889999999999988663222 13444555677
Q ss_pred hhhhhhhhhHhhHHHhhhHHHHHhhhhhhh----HHHHHHHHHHHHHHHHHHhc---cchHHHHhhhhHHHHhhhhHHhh
Q 006822 223 SLARELDLEKKISELNQNEEQLKLKLHHTE----QVAFRMEEAAEVVWGRFLEA---ENSAEVLMGISKEMLGRFQIVQF 295 (630)
Q Consensus 223 Sla~EldLEkkL~es~~~eeeLk~kL~~~e----qe~~~lEE~~~~~~er~~EA---ENa~EvL~g~skel~gkLq~~qf 295 (630)
+|++---||..+++.+.-.-.+..++.... ..+..++++..+...-..++ +=.++-.+...++....|+.+++
T Consensus 876 ~l~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e~~k~~~~~~~~~aqk~~~~ine~~s~l~~~~~ 955 (1294)
T KOG0962|consen 876 SLARLQQLEEDIEELSEEITRLDSKVKELLERIQPLKVELEEAQSEKEELKNERNTSEKLAQKKRNDINEKVSLLHQIYK 955 (1294)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888887775555555554433 34455555555444443332 22233334555677777777665
No 231
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=47.77 E-value=3.5e+02 Score=28.21 Aligned_cols=50 Identities=20% Similarity=0.391 Sum_probs=40.2
Q ss_pred hhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHH
Q 006822 321 KDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLN 372 (630)
Q Consensus 321 k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVa 372 (630)
-...|..+.+- +.+..|.+.+..+|..|+.+...+..|+.....+.+.-+
T Consensus 21 as~~lNd~TGY--s~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs 70 (207)
T PF05546_consen 21 ASQALNDVTGY--SEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRS 70 (207)
T ss_pred HHHHHHhccCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556667764 889999999999999999999999999988887644333
No 232
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=47.71 E-value=80 Score=28.75 Aligned_cols=44 Identities=18% Similarity=0.259 Sum_probs=39.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhh
Q 006822 530 KEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQY 573 (630)
Q Consensus 530 Keae~Rak~aE~lV~KL~~ErdrLedQl~s~keenK~L~ekld~ 573 (630)
+.++.-.+++++-+..|...++.|+..+..+.+....+...+++
T Consensus 82 ~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~~ 125 (126)
T TIGR00293 82 KDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQQ 125 (126)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 67777788999999999999999999999999999999888875
No 233
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=46.95 E-value=5.6e+02 Score=30.35 Aligned_cols=273 Identities=20% Similarity=0.231 Sum_probs=139.4
Q ss_pred hhhhhHHHHHHHHHHHHH---HHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHH
Q 006822 248 LHHTEQVAFRMEEAAEVV---WGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMV 324 (630)
Q Consensus 248 L~~~eqe~~~lEE~~~~~---~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~ 324 (630)
|.-.+.+.-++.|..+++ .+|=.+|-|-.+..+.++..-+.|.. +...+....
T Consensus 276 ld~aeeel~~I~e~ie~lYd~lE~EveA~~~V~~~~~~l~~~l~k~k------------------------e~n~~L~~E 331 (570)
T COG4477 276 LDEAEEELGLIQEKIESLYDLLEREVEAKNVVEENLPILPDYLEKAK------------------------ENNEHLKEE 331 (570)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHH------------------------HHHHHHHHH
Confidence 344555555555555554 45667888888777766655544443 333333334
Q ss_pred HHHhhcC---ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 006822 325 LQKLEST---KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQ 401 (630)
Q Consensus 325 lekl~~s---~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~ 401 (630)
++.+..+ .++|.. .++..+++|++....+.......++...--+.+...++.+...+..-+..-.....-+..
T Consensus 332 ie~V~~sY~l~e~e~~----~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~ 407 (570)
T COG4477 332 IERVKESYRLAETELG----SVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTS 407 (570)
T ss_pred HHHHHHHhccChhHHH----HHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4444444 344432 345556666666666666555555543333344444444443333333332222222222
Q ss_pred HhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhh
Q 006822 402 LTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAES 481 (630)
Q Consensus 402 LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~ 481 (630)
|.+-=.+-... ++.+-++|.+.+ .|=+-+++=.+=++. -.
T Consensus 408 LrkdEl~Are~--------------l~~~~~~l~eik-------------------R~mek~nLPGlPe~~-------l~ 447 (570)
T COG4477 408 LRKDELEAREN--------------LERLKSKLHEIK-------------------RYMEKSNLPGLPETF-------LS 447 (570)
T ss_pred HHHHHHHHHHH--------------HHHHHHHHHHHH-------------------HHHHHcCCCCCcHHH-------HH
Confidence 22211111111 122222233332 121122222222211 12
Q ss_pred hhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006822 482 KTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLT 561 (630)
Q Consensus 482 RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQl~s~k 561 (630)
+...+..++- .|..+|+-+.=|++.+-.-.+.|.. ++.+-....+.+|.+ -+|-.||-.-.
T Consensus 448 l~~~~~~~i~-------~l~~eLse~pinm~~v~~~v~~a~~-------~m~~l~~~t~e~ve~-----a~LaE~lIQY~ 508 (570)
T COG4477 448 LFFTAGHEIQ-------DLMKELSEVPINMEAVSALVDIATE-------DMNTLEDETEEVVEN-----AVLAEQLIQYG 508 (570)
T ss_pred HHHhhhhHHH-------HHHHHHhhcCCcHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 2234445566 7888888888888877555554432 222333334444433 25556666677
Q ss_pred HhhhHHHHHHhhcCCCCcceeccCCCCCCcceeeccCCCcccccccchHHHHHHHHhhhhcce
Q 006822 562 SENKLLVEKLQYSGKSSSATMYNAGDTDDKELLINPTNNLAGATVKTSEDAVSLMKSVQAGLT 624 (630)
Q Consensus 562 eenK~L~ekld~tkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (630)
-+|+.-+..++..=+++--..+|+||-|. .|+.|+..+-.|-.|.|
T Consensus 509 NRYRs~~~~v~~~l~eAe~lF~~~~dY~~-----------------s~eia~qaLE~vEpGv~ 554 (570)
T COG4477 509 NRYRSRNAEVAKSLNEAERLFENAFDYDA-----------------SFEIASQALEKVEPGVT 554 (570)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHhcchhH-----------------HHHHHHHHHhhhCCcHH
Confidence 78888777787777777777888877653 46777777777777765
No 234
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=46.57 E-value=6.1e+02 Score=31.11 Aligned_cols=62 Identities=24% Similarity=0.397 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhh
Q 006822 338 TMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLK 417 (630)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Le 417 (630)
+++.||..|+.|+++.-+..-++ +++.+.|++||.++.+|-..-+. .
T Consensus 646 ~~k~KIe~L~~eIkkkIe~av~s-----------s~LK~k~E~Lk~Evaka~~~pd~----------------------~ 692 (762)
T PLN03229 646 NLQEKIESLNEEINKKIERVIRS-----------SDLKSKIELLKLEVAKASKTPDV----------------------T 692 (762)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcc-----------hhHHHHHHHHHHHHHhcCCCCCc----------------------c
Confidence 34789999998888765544432 47888999999888444322111 1
Q ss_pred cCCCCchhhhhhHHHHHHHH
Q 006822 418 GNNDSNTKKVGILENQLRDL 437 (630)
Q Consensus 418 srs~~deEK~~~LE~QLKEa 437 (630)
.-+|++.||.|+|..
T Consensus 693 -----~k~kieal~~qik~~ 707 (762)
T PLN03229 693 -----EKEKIEALEQQIKQK 707 (762)
T ss_pred -----hHHHHHHHHHHHHHH
Confidence 136899999999973
No 235
>PRK09343 prefoldin subunit beta; Provisional
Probab=46.17 E-value=2.5e+02 Score=26.16 Aligned_cols=40 Identities=18% Similarity=0.274 Sum_probs=32.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 006822 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLV 568 (630)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLedQl~s~keenK~L~ 568 (630)
.+++..|.++++.-+..|.+..++|+.++.......+.+.
T Consensus 73 ~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll 112 (121)
T PRK09343 73 EKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEML 112 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999998888888888888888877776666543
No 236
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=45.96 E-value=1.1e+02 Score=29.14 Aligned_cols=72 Identities=21% Similarity=0.344 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHH------hHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHH
Q 006822 428 GILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIW------DMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELK 501 (630)
Q Consensus 428 ~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~------dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELe 501 (630)
..+|.||+|.+.-|..---+.+++.- |-.|- ++..++.+|..+.+.-|-|....+.+-- .+.
T Consensus 30 ~~le~qL~E~~~al~Ele~l~eD~~v-----Yk~VG~llvk~~k~~~~~eL~er~E~Le~ri~tLekQe~-------~l~ 97 (119)
T COG1382 30 QQLEAQLKEIEKALEELEKLDEDAPV-----YKKVGNLLVKVSKEEAVDELEERKETLELRIKTLEKQEE-------KLQ 97 (119)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccHH-----HHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH
Confidence 45566666666555555556666533 54443 4446777777777766666666666665 444
Q ss_pred HHHHHHHhhH
Q 006822 502 NKQSFMRDKI 511 (630)
Q Consensus 502 EEL~~l~~~l 511 (630)
+++.-+.+.+
T Consensus 98 e~l~eLq~~i 107 (119)
T COG1382 98 ERLEELQSEI 107 (119)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 237
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=45.91 E-value=1e+02 Score=25.97 Aligned_cols=33 Identities=15% Similarity=0.210 Sum_probs=22.1
Q ss_pred hhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHH
Q 006822 364 FQTSQEQLNEMDNFIESLKESLYGAESRAESAE 396 (630)
Q Consensus 364 lEesE~EVaaLerrIelLKEel~rAEsRa~tAe 396 (630)
.....++|.+|..-++..+++..||-.|+.+--
T Consensus 19 vdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~a 51 (56)
T PF04728_consen 19 VDQLSSDVNALRADVQAAKEEAARANQRLDNIA 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 333345556666667777888888888887643
No 238
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=45.75 E-value=3.2e+02 Score=27.18 Aligned_cols=53 Identities=19% Similarity=0.242 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHH
Q 006822 345 SLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEE 397 (630)
Q Consensus 345 sLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAes 397 (630)
.|+.-+++.+.++..++..+...-+....+++.+..++..+.+=+.|+..|..
T Consensus 27 ~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~ 79 (221)
T PF04012_consen 27 MLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALA 79 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444445555555555555555555555543
No 239
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=45.66 E-value=8.1e+02 Score=31.87 Aligned_cols=33 Identities=3% Similarity=-0.055 Sum_probs=15.6
Q ss_pred hhhhhccchhhHHHHHHHHHhhHHHHHHHHHHH
Q 006822 489 QCIVLSEDNFELKNKQSFMRDKIKILESSLNRA 521 (630)
Q Consensus 489 Kc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA 521 (630)
+|.+++..=..-+.+++.+.+++..+=...-..
T Consensus 532 ~~~~~~k~~~~k~~~~~k~~~~~~~~~~~~~~~ 564 (1294)
T KOG0962|consen 532 KLELLKKKLRKKDAELRKIKSRLSDEKGRAIEF 564 (1294)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhcchhhhhhhcc
Confidence 344444444444555555555555544444333
No 240
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=45.64 E-value=1.4e+02 Score=25.92 Aligned_cols=62 Identities=16% Similarity=0.265 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHH
Q 006822 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAES 394 (630)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~t 394 (630)
|..+..|++.-..|-.+--.....+....++..+.+..+..+..++..+..++...+.|+..
T Consensus 11 De~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~~ 72 (74)
T PF12329_consen 11 DEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLKR 72 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44444444444444333333333344444444445556666666666666666666665543
No 241
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=45.51 E-value=5.7e+02 Score=30.03 Aligned_cols=25 Identities=32% Similarity=0.497 Sum_probs=17.7
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhhhh
Q 006822 467 TLIEDLKSKVSKAESKTESVEEQCI 491 (630)
Q Consensus 467 ~vIEdLk~Kl~rAE~RaE~aEsKc~ 491 (630)
.=|++|-.++..|++++-.....|-
T Consensus 420 ~RI~eLt~qlQ~adSKa~~f~~Ec~ 444 (518)
T PF10212_consen 420 SRIEELTSQLQHADSKAVHFYAECR 444 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355666777788877777777777
No 242
>PRK02793 phi X174 lysis protein; Provisional
Probab=45.46 E-value=1.1e+02 Score=26.42 Aligned_cols=48 Identities=21% Similarity=0.205 Sum_probs=41.4
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC
Q 006822 528 SAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (630)
Q Consensus 528 tlKeae~Rak~aE~lV~KL~~ErdrLedQl~s~keenK~L~ekld~tk 575 (630)
.+-+++.|.-|-+++|..|...+=+-+.+|..+....+.|.++++...
T Consensus 9 Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 9 RLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 466788888999999999999999999999999999999988888754
No 243
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=45.19 E-value=34 Score=28.78 Aligned_cols=29 Identities=31% Similarity=0.503 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 006822 373 EMDNFIESLKESLYGAESRAESAEEKVTQ 401 (630)
Q Consensus 373 aLerrIelLKEel~rAEsRa~tAesKle~ 401 (630)
+++-|+..||..+..||.|++.|+.+...
T Consensus 29 tiEqRLa~LE~rL~~ae~ra~~ae~~~~~ 57 (60)
T PF11471_consen 29 TIEQRLAALEQRLQAAEQRAQAAEARAKQ 57 (60)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777777777777666543
No 244
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=44.85 E-value=3.8e+02 Score=27.80 Aligned_cols=104 Identities=13% Similarity=0.211 Sum_probs=60.9
Q ss_pred HHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHH---HHHH------HHHhHHHHhhH
Q 006822 459 YSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKIL---ESSL------NRANIEKAASA 529 (630)
Q Consensus 459 ysei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksL---E~sl------~kA~q~ke~tl 529 (630)
.+....+..=+|-..+.+.+.-..++..-.|+. .|+.|+.-++..+... .... +.|........
T Consensus 58 ~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~-------~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~ 130 (202)
T PF06818_consen 58 QDSLRTKQLELEVCENELQRKKNEAELLREKLG-------QLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGE 130 (202)
T ss_pred HHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhh-------hhHHHHHHHHHHHHhhccchhhhccccccchhHHhhcccc
Confidence 333334444444445777777777777777888 6666666666655554 0111 11111111122
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 006822 530 KEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVE 569 (630)
Q Consensus 530 Keae~Rak~aE~lV~KL~~ErdrLedQl~s~keenK~L~e 569 (630)
..+..-..-++++-..|..+|.+.+.+..+.-.+-+.-.+
T Consensus 131 ~~~~~l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W~e 170 (202)
T PF06818_consen 131 DELGSLRREVERLRAELQRERQRREEQRSSFEQERRTWQE 170 (202)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3455556678888889999999998888876665554433
No 245
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=44.63 E-value=40 Score=36.88 Aligned_cols=105 Identities=14% Similarity=0.202 Sum_probs=9.4
Q ss_pred HHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHH
Q 006822 264 VVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKV 343 (630)
Q Consensus 264 ~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKv 343 (630)
.+++|+..=|.+..-|.+....+..++..++.+|+....-=++++.-|.... ..+..|+..+
T Consensus 32 ~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLs------------------stV~~lq~Sl 93 (326)
T PF04582_consen 32 PIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLS------------------STVTSLQSSL 93 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHH
Confidence 3555555555555555555555555555555555544333333333332222 3333444444
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHH
Q 006822 344 KSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLY 386 (630)
Q Consensus 344 ksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~ 386 (630)
..++..+......+......+...+..|++|...|-.||.+|.
T Consensus 94 ~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVS 136 (326)
T PF04582_consen 94 SSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVS 136 (326)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhh
Confidence 4444444443333333333333334445555555555555543
No 246
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=44.35 E-value=3e+02 Score=26.45 Aligned_cols=70 Identities=14% Similarity=0.142 Sum_probs=53.0
Q ss_pred HHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---------HHHhhhHHHHHHhhcC
Q 006822 506 FMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYS---------LTSENKLLVEKLQYSG 575 (630)
Q Consensus 506 ~l~~~lksLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQl~s---------~keenK~L~ekld~tk 575 (630)
.+.+.+++||+..+...+.++..-+.-..+++.++.-+.++..-...++..+.- .+.+|+.|..+++...
T Consensus 24 ~v~~~l~~LEae~q~L~~kE~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk~eYk~llk~y~~~~ 102 (126)
T PF09403_consen 24 SVESELNQLEAEYQQLEQKEEARYNEEKQEAEAAEAELAELKELYAEIEEKIEKLKQDSKVRWYKDEYKELLKKYKDLL 102 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Confidence 577889999999999999999888888888888888888876665555555433 3567777777776553
No 247
>PRK02119 hypothetical protein; Provisional
Probab=44.04 E-value=1e+02 Score=26.73 Aligned_cols=48 Identities=10% Similarity=0.087 Sum_probs=41.0
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC
Q 006822 528 SAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (630)
Q Consensus 528 tlKeae~Rak~aE~lV~KL~~ErdrLedQl~s~keenK~L~ekld~tk 575 (630)
-+-+++.|.-|-+++|..|...+=+-+.+|..++...+.|.+.++...
T Consensus 10 Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 10 RIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 356778888899999999999999999999999999999988887753
No 248
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=43.88 E-value=4.4e+02 Score=28.30 Aligned_cols=117 Identities=23% Similarity=0.266 Sum_probs=83.2
Q ss_pred Hhhhhhh-hhhHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccc
Q 006822 222 KSLAREL-DLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGS 300 (630)
Q Consensus 222 kSla~El-dLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as 300 (630)
++||+|+ +...+|.|.=..|-+++......-. |-++-.-.-..|+...+.+...++.++-.|+..
T Consensus 123 R~Laseit~~GA~LydlL~kE~~lr~~R~~a~~--------------r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l 188 (267)
T PF10234_consen 123 RQLASEITQRGASLYDLLGKEVELREERQRALA--------------RPLELNEIEKALKEAIKAVQQQLQQTQQQLNNL 188 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhchHhHHHHHHHHHc--------------CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578876 5778888877777666655433222 555555555678888899999999999999999
Q ss_pred hhchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHH
Q 006822 301 LQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIR 356 (630)
Q Consensus 301 ~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQ 356 (630)
...|..|-.|++.-.-.|+.-..-|+.|.+-++ .-.+-...+|.+|...-..
T Consensus 189 ~~de~~Le~KIekkk~ELER~qKRL~sLq~vRP----AfmdEyEklE~EL~~lY~~ 240 (267)
T PF10234_consen 189 ASDEANLEAKIEKKKQELERNQKRLQSLQSVRP----AFMDEYEKLEEELQKLYEI 240 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh----HHHHHHHHHHHHHHHHHHH
Confidence 999999999998888888877777777777654 3334444455555544333
No 249
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=43.08 E-value=7.6e+02 Score=30.82 Aligned_cols=146 Identities=20% Similarity=0.290 Sum_probs=88.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHH--------HHHHHHhhhhhHHHHHHH---HH
Q 006822 332 KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIES--------LKESLYGAESRAESAEEK---VT 400 (630)
Q Consensus 332 ~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIel--------LKEel~rAEsRa~tAesK---le 400 (630)
++.++..++.+-..+|..|...+.+-++-...++.+.+.++.|++.|-. |...+..-.++++.|..- ..
T Consensus 834 PE~~~~~~~~~Rnei~R~l~~~~~~~QQ~R~Q~d~aKe~~~~LnkLiPql~ll~dE~L~dRveE~~E~L~~a~e~~~fI~ 913 (1480)
T COG3096 834 PEAEIRQLNSRRNELERALSNHENDNQQQRIQFDQAKEGVTALNRLIPQLNLLADESLADRVEEIRERLDEAQEAARFIQ 913 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677889999999999999888877776666677766666666665532 233333333333333221 12
Q ss_pred HHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhH----hhhHhHHHHHhhhHHHHHhHHHHH----HHH
Q 006822 401 QLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAK----VSSEASQEQQSMLYSAIWDMETLI----EDL 472 (630)
Q Consensus 401 ~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~----asaEas~eqQ~mkysei~dme~vI----EdL 472 (630)
.---|-.+|+--.++|.+ |-+--+.|+.+...+..+..+++ +.++--+++----|+.-.+|++-- |.|
T Consensus 914 qhG~tls~LEpia~~Lqs----DPe~~e~L~~~y~qA~~~q~q~~qq~FAL~dv~qRr~HF~Y~ds~~~l~e~sdLnekL 989 (1480)
T COG3096 914 QHGNTLSKLEPIASVLQS----DPEQFEQLKEDYAQAQQMQRQARQQAFALTEVVQRRAHFSYSDSAEMLSENSDLNEKL 989 (1480)
T ss_pred HhcchHHhhhhHHHHHhC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhhhcccchhhHHH
Confidence 222345566667777776 55777888887777665555554 444444555555677777777443 444
Q ss_pred hhhhhhhhh
Q 006822 473 KSKVSKAES 481 (630)
Q Consensus 473 k~Kl~rAE~ 481 (630)
+.++..++.
T Consensus 990 r~rL~q~ea 998 (1480)
T COG3096 990 RQRLEQAEA 998 (1480)
T ss_pred HHHHHHHHH
Confidence 444444443
No 250
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=42.89 E-value=3.7e+02 Score=27.14 Aligned_cols=48 Identities=21% Similarity=0.379 Sum_probs=25.7
Q ss_pred HHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhH
Q 006822 469 IEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANI 523 (630)
Q Consensus 469 IEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q 523 (630)
+..++.++...+.|.......+. .+.+++...+.++..+..++.....
T Consensus 58 ~~~~~~~~~~~~~r~~~l~~~i~-------~~~~~i~~~r~~l~~~~~~l~~~~~ 105 (302)
T PF10186_consen 58 IQQLKREIEELRERLERLRERIE-------RLRKRIEQKRERLEELRESLEQRRS 105 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555656555555555 5555555555555555555544433
No 251
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=42.80 E-value=2.6e+02 Score=30.09 Aligned_cols=70 Identities=17% Similarity=0.254 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhh-------HHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhH
Q 006822 338 TMKEKVKSLEEQLKESEIRLQNANACFQTS-------QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNL 407 (630)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~aklEes-------E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNd 407 (630)
.+.+.+..||.+..+...++.......+.. -.+.+.+......+.++......+...+..++..|.+||.
T Consensus 61 ~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ktNv 137 (314)
T PF04111_consen 61 ELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRKTNV 137 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT--T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 333444444444444444444333333222 3355667777777777777777778888888888777774
No 252
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=42.65 E-value=35 Score=37.27 Aligned_cols=50 Identities=20% Similarity=0.365 Sum_probs=31.4
Q ss_pred HhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCC
Q 006822 372 NEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNND 421 (630)
Q Consensus 372 aaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~ 421 (630)
.+|.++|..+++.++..|.|+.........+.+-...+...+..|++++-
T Consensus 140 ~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsR 189 (370)
T PF02994_consen 140 ESLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSR 189 (370)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 35777777777777777777777766666666665566666666666543
No 253
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=42.34 E-value=6e+02 Score=29.43 Aligned_cols=102 Identities=19% Similarity=0.244 Sum_probs=51.7
Q ss_pred HHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHh
Q 006822 394 SAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLK 473 (630)
Q Consensus 394 tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk 473 (630)
.+..|+..+.++-.+|..+-+.|-++- ||..-+... +..+.+.+.-- .-+.+.+.+...=|++.-
T Consensus 96 ~~~ek~~~l~~~~~~L~~~F~~LA~~i---------le~k~~~f~---~~~~~~l~~ll---~Pl~e~l~~f~~~v~~~~ 160 (475)
T PRK10361 96 HADDKIRQMINSEQRLSEQFENLANRI---------FEHSNRRVD---EQNRQSLNSLL---SPLREQLDGFRRQVQDSF 160 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHH---HHHHHHHHHHH---hhHHHHHHHHHHHHHHHH
Confidence 456677788888888887777666652 222211111 00000000000 012223333333333322
Q ss_pred hhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHH
Q 006822 474 SKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKI 513 (630)
Q Consensus 474 ~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lks 513 (630)
.+ +++.| -+....+.-|.+.|..+..|=..+.+-||.
T Consensus 161 ~~--~~~~~-~~L~~qi~~L~~~n~~i~~ea~nLt~ALkg 197 (475)
T PRK10361 161 GK--EAQER-HTLAHEIRNLQQLNAQMAQEAINLTRALKG 197 (475)
T ss_pred HH--HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 22 33334 344556778888888888888877776654
No 254
>PRK04406 hypothetical protein; Provisional
Probab=42.32 E-value=1.7e+02 Score=25.52 Aligned_cols=48 Identities=10% Similarity=0.135 Sum_probs=41.4
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC
Q 006822 528 SAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (630)
Q Consensus 528 tlKeae~Rak~aE~lV~KL~~ErdrLedQl~s~keenK~L~ekld~tk 575 (630)
.+-+++.|.-|-+++|..|...+=+-+.+|..+....+.|.+.++...
T Consensus 12 Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 12 RINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 466788888999999999999999999999999999999988887654
No 255
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=42.12 E-value=6.1e+02 Score=29.46 Aligned_cols=135 Identities=24% Similarity=0.283 Sum_probs=62.6
Q ss_pred hHHhhhcccchhchhHHHHHHHhHHHH---HhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh-
Q 006822 291 QIVQFNLNGSLQRESELKSKLGDFIEQ---LKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQT- 366 (630)
Q Consensus 291 q~~qf~L~as~~REsel~sKL~~~~eq---L~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEe- 366 (630)
+-.+.-|-|++.||-+|..= |.+| ..+.+..+++.... .|..++-... -|..+...+ .|-+..-.-++
T Consensus 101 KavekVlagaIrREmeLEe~---C~eQAakIeQLNrLVqQyK~E--rE~naiI~Q~--re~k~~rle-slmdg~l~~~e~ 172 (488)
T PF06548_consen 101 KAVEKVLAGAIRREMELEEV---CAEQAAKIEQLNRLVQQYKHE--RECNAIIAQT--REDKILRLE-SLMDGVLPTEEF 172 (488)
T ss_pred hhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHccc--chhhHHHHHh--hhhHHHHHH-HhhccccchHHH
Confidence 55677788999999988643 3333 22333444554442 3333321100 011111111 11112112222
Q ss_pred hHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHH
Q 006822 367 SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQ 442 (630)
Q Consensus 367 sE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLq 442 (630)
..++..+|.+...+|+++.. .-......+|+ +-..-+|+.. .++-.+.-.||=.+|+ -+...+.|||
T Consensus 173 ~~ee~~sl~~e~KlLk~~~e---n~pevl~~~~E-~k~~qeel~~----~~~~~~d~~EkE~Ll~-EIq~Lk~qL~ 239 (488)
T PF06548_consen 173 IDEEYVSLMHEHKLLKEKYE---NHPEVLKEKIE-LKRVQEELEE----YRNFSFDMGEKEVLLE-EIQDLKSQLQ 239 (488)
T ss_pred hhhHhhhhhhHhhhhhhhcc---CchHHHhhHhH-HHHHHHHHHh----ccccccCcchHHHHHH-HHHHHHHHHH
Confidence 26677888888888888643 22333333332 2222333332 2333333346633333 3666667777
No 256
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=41.97 E-value=3.2e+02 Score=29.43 Aligned_cols=50 Identities=18% Similarity=0.322 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHH
Q 006822 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLK 382 (630)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLK 382 (630)
+.+...+.+.++.++.+-++....|.......+....++.+++.....++
T Consensus 42 ~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~ 91 (314)
T PF04111_consen 42 EEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELD 91 (314)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666555555555544444455555555444444
No 257
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=41.74 E-value=4.1e+02 Score=27.39 Aligned_cols=37 Identities=19% Similarity=0.290 Sum_probs=19.3
Q ss_pred hhhhhhhhhccchhhHHHHHHHHHhh----HHHHHHHHHHHhHHHHhh
Q 006822 485 SVEEQCIVLSEDNFELKNKQSFMRDK----IKILESSLNRANIEKAAS 528 (630)
Q Consensus 485 ~aEsKc~~Lse~N~ELeEEL~~l~~~----lksLE~sl~kA~q~ke~t 528 (630)
.|+.|+- .-|+|+..++++ +..|.+++.++.-+-.+.
T Consensus 140 hAeekL~-------~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SL 180 (207)
T PF05010_consen 140 HAEEKLE-------KANEEIAQVRSKHQAELLALQASLKKEEMKVQSL 180 (207)
T ss_pred HHHHHHH-------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555 445555555544 445666665554444443
No 258
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=41.66 E-value=1.9e+02 Score=23.50 Aligned_cols=80 Identities=25% Similarity=0.353 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhh----hHHHHHH
Q 006822 337 LTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDT----NLELSEE 412 (630)
Q Consensus 337 ~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseT----NdELere 412 (630)
......+..+..++......|..... ......+..+-+..+.++.++..-+.++......+..+..+ +..+...
T Consensus 4 ~~f~~~~~~l~~Wl~~~e~~l~~~~~--~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~ 81 (105)
T PF00435_consen 4 QQFQQEADELLDWLQETEAKLSSSEP--GSDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQEK 81 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSCTH--SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 45566677777777777776633222 22345566666677777777777777777777777777544 3444444
Q ss_pred hhhhhc
Q 006822 413 INFLKG 418 (630)
Q Consensus 413 lk~Les 418 (630)
+..|..
T Consensus 82 ~~~l~~ 87 (105)
T PF00435_consen 82 LEELNQ 87 (105)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 259
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=41.00 E-value=4.1e+02 Score=27.06 Aligned_cols=147 Identities=16% Similarity=0.203 Sum_probs=86.4
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhch-hHHHHHHHhHHHHHhh
Q 006822 242 EQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRE-SELKSKLGDFIEQLKA 320 (630)
Q Consensus 242 eeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~RE-sel~sKL~~~~eqL~~ 320 (630)
.+|..+|..+....-........+..++.+..+..+-+....-+...+++.+...|++..-.- +.|..=....+
T Consensus 81 ~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l----- 155 (240)
T PF12795_consen 81 EELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLL----- 155 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHH-----
Confidence 445555555555555666777778888888999999999999999999999999999842222 22221111111
Q ss_pred hhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 006822 321 KDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVT 400 (630)
Q Consensus 321 k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle 400 (630)
..|...|.-++.-++..+....-...-+....+.....+..++..++.|.+-+. .-|...|+...+
T Consensus 156 ------------~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln--~~R~~eae~~~~ 221 (240)
T PF12795_consen 156 ------------QAELAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLN--QKRRQEAEQAVE 221 (240)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 244445555555555555554444444444444445555555555666655553 234455555555
Q ss_pred HHhhhhH
Q 006822 401 QLTDTNL 407 (630)
Q Consensus 401 ~LseTNd 407 (630)
.+.....
T Consensus 222 ~a~~~~~ 228 (240)
T PF12795_consen 222 EAEQLQE 228 (240)
T ss_pred HHHHHHH
Confidence 4444433
No 260
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=40.51 E-value=5.1e+02 Score=29.50 Aligned_cols=117 Identities=15% Similarity=0.224 Sum_probs=56.2
Q ss_pred HhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhh
Q 006822 449 EASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAAS 528 (630)
Q Consensus 449 Eas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~ke~t 528 (630)
+.++. +...|.|+..+||+|+.+|..---| -...+.- -+..+|..++..|+.++.......
T Consensus 213 ~~sd~----Ll~kVdDLQD~VE~LRkDV~~RgvR--p~~~qle-------~v~kdi~~a~~~L~~m~~~i~~~k------ 273 (424)
T PF03915_consen 213 EESDR----LLTKVDDLQDLVEDLRKDVVQRGVR--PSPKQLE-------TVAKDISRASKELKKMKEYIKTEK------ 273 (424)
T ss_dssp HHHHH----HHHHHHHHHHHHHHHHHHHHHH-------HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHcCCc--CCHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhC------
Confidence 46677 8889999999999999998866544 2333333 344455555555554433322211
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhHHHHHHhhcCCCCcceeccCCCC
Q 006822 529 AKEVNHRTKLMMEMVMQLATQRELIQKQ---VYSLTSENKLLVEKLQYSGKSSSATMYNAGDT 588 (630)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLedQ---l~s~keenK~L~ekld~tkk~~~~~~~~~~~~ 588 (630)
- .=+++.|.=..+--.|.+=|..| +.-+++..+.+.+.+...+.=.....-+++.+
T Consensus 274 --p--~WkKiWE~EL~~V~eEQqfL~~QedL~~DL~eDl~k~~etf~lveq~~~~Q~k~~~~~ 332 (424)
T PF03915_consen 274 --P--IWKKIWESELQKVCEEQQFLKLQEDLLSDLKEDLKKASETFALVEQCTEEQEKSPSRS 332 (424)
T ss_dssp --H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT---------
T ss_pred --H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC
Confidence 1 11223332223333333333222 44566777777777776655444444444444
No 261
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=40.44 E-value=7.6e+02 Score=30.06 Aligned_cols=63 Identities=14% Similarity=0.248 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHH
Q 006822 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAE 396 (630)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAe 396 (630)
.+.-.+|+++.-||.+-+....|..-.....++.-++|.+|+-.|+.-..++--+|+-++.-.
T Consensus 104 ~~~~~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqel 166 (861)
T KOG1899|consen 104 PEYPEYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQEL 166 (861)
T ss_pred CcchHHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHH
Confidence 667789999999999999999998888888888888999999999999999988888777643
No 262
>PRK10869 recombination and repair protein; Provisional
Probab=40.34 E-value=6.4e+02 Score=29.19 Aligned_cols=19 Identities=16% Similarity=0.149 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHhHHHHhh
Q 006822 510 KIKILESSLNRANIEKAAS 528 (630)
Q Consensus 510 ~lksLE~sl~kA~q~ke~t 528 (630)
+|..+|.-+...+.-+-+|
T Consensus 297 ~l~~ie~Rl~~l~~L~rKy 315 (553)
T PRK10869 297 RLAELEQRLSKQISLARKH 315 (553)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3555566666666666666
No 263
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=40.31 E-value=67 Score=28.15 Aligned_cols=41 Identities=12% Similarity=0.284 Sum_probs=30.0
Q ss_pred HHHHHHhhhhhh---hhHHhHHHHHHHHHhhhhcccceeccccc
Q 006822 95 ALVYDLLFGILD---SELREVERLLDTIHVEIVNVHHKISSCKH 135 (630)
Q Consensus 95 a~efDlL~gild---sEv~ele~~~~~lq~~I~~~~~~~~s~~~ 135 (630)
+.-||+++.|-+ ...+.++.-++.|..-|..++.-|.+-..
T Consensus 6 P~i~~~l~~~~~d~~~~~kd~~~~~~~lk~Klq~ar~~i~~lpg 49 (83)
T PF07544_consen 6 PLIFDILHQISKDPPLSSKDLDTATGSLKHKLQKARAAIRELPG 49 (83)
T ss_pred chHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 456788887765 36788888888888888888776655444
No 264
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=40.05 E-value=5.2e+02 Score=28.08 Aligned_cols=32 Identities=6% Similarity=0.093 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCC
Q 006822 546 LATQRELIQKQVYSLTSENKLLVEKLQYSGKS 577 (630)
Q Consensus 546 L~~ErdrLedQl~s~keenK~L~ekld~tkk~ 577 (630)
.+.+..+|+-++-....-|..+..++++++-.
T Consensus 340 ~~~~~~~L~r~~~~~~~~y~~ll~r~~e~~l~ 371 (444)
T TIGR03017 340 QRDEMSVLQRDVENAQRAYDAAMQRYTQTRIE 371 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888888888888888887654
No 265
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=40.05 E-value=89 Score=33.60 Aligned_cols=29 Identities=28% Similarity=0.357 Sum_probs=18.4
Q ss_pred hhhhhhHhhHHHHHHHHHHHHHhhHhhhh
Q 006822 148 KKLHDCEGSLKESQEHVSELKMQSAKFQR 176 (630)
Q Consensus 148 ~kL~~~~~sLkq~qe~~~ei~~qsa~f~r 176 (630)
.||.++...+..|+.++...+-+...-++
T Consensus 8 ~KL~et~~~V~~m~~~L~~~~~~L~~k~~ 36 (344)
T PF12777_consen 8 DKLKETEEQVEEMQEELEEKQPELEEKQK 36 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777666666666666666555443
No 266
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=39.80 E-value=5.5e+02 Score=28.27 Aligned_cols=199 Identities=25% Similarity=0.280 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHH-hHHHHHHHHHHHHH
Q 006822 308 KSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLN-EMDNFIESLKESLY 386 (630)
Q Consensus 308 ~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVa-aLerrIelLKEel~ 386 (630)
+..|...+..|.+....| ..|+-...-+.+.|..+++..........++.|.-++-|+ .|-++|+.|+-+-.
T Consensus 22 ~~~l~~~~~sL~qen~~L-------k~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe 94 (310)
T PF09755_consen 22 REQLRKRIESLQQENRVL-------KRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKE 94 (310)
T ss_pred hHHHHHHHHHHHHHhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHH
Q 006822 387 GAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDME 466 (630)
Q Consensus 387 rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme 466 (630)
.---....=+.-++ ..|.+.+.-|+. +|+ .||++| ....+
T Consensus 95 ~L~~~~e~EEE~lt------n~L~rkl~qLr~------EK~-~lE~~L---------------------------e~EqE 134 (310)
T PF09755_consen 95 TLALKYEQEEEFLT------NDLSRKLNQLRQ------EKV-ELENQL---------------------------EQEQE 134 (310)
T ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHH------HHH-HHHHHH---------------------------HHhHH
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHH
Q 006822 467 TLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQL 546 (630)
Q Consensus 467 ~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL 546 (630)
.+|.-|..++.+.+.. +. .+..+|.-++.---.||+.|++..+
T Consensus 135 ~~V~kL~k~i~~Le~e-------~~-------~~q~~le~Lr~EKVdlEn~LE~EQE----------------------- 177 (310)
T PF09755_consen 135 YLVNKLQKKIERLEKE-------KS-------AKQEELERLRREKVDLENTLEQEQE----------------------- 177 (310)
T ss_pred HHHHHHHHHHHHHHHH-------HH-------HhHHHHHHHHHHHHhHHHHHHHHHH-----------------------
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhhcCCCCcceeccC-----CCCCCc
Q 006822 547 ATQRELIQKQVYSLTSENKLLVEKLQYSGKSSSATMYNA-----GDTDDK 591 (630)
Q Consensus 547 ~~ErdrLedQl~s~keenK~L~ekld~tkk~~~~~~~~~-----~~~~~~ 591 (630)
.=|.||..|+.-+..+++.|-.+|++.--.|+-..+.+ +||-++
T Consensus 178 -~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~~~~Dt~e~ 226 (310)
T PF09755_consen 178 -ALVNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVNVSEENDTAER 226 (310)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCcchHHhhcccCCchhH
No 267
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=39.02 E-value=7.2e+02 Score=29.41 Aligned_cols=131 Identities=20% Similarity=0.218 Sum_probs=68.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh------------HH--------------HHHhHHHHHHHHHHHHH
Q 006822 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS------------QE--------------QLNEMDNFIESLKESLY 386 (630)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEes------------E~--------------EVaaLerrIelLKEel~ 386 (630)
-+-+..||.+..+||++++..-.+...-.-.+-.. ++ .-++..| .+.
T Consensus 89 lk~nk~Lq~~nesLeEqv~~~~d~vvql~hels~k~ellr~ys~~~ees~~~~v~~~P~~~~~s~S~~~~---~~~---- 161 (596)
T KOG4360|consen 89 LKANKALQEDNESLEEQVDAPWDRVVQLGHELSRKDELLRGYSAAIEESEAASVCSTPLVSNESRSAFQR---ELL---- 161 (596)
T ss_pred HhhhhhhhhhhhhhHhhhcchHHHHHHhhhhhhhhhhhhheeeeccccccccccccCCCccCcchhhHHH---HHH----
Confidence 45567899999999999887666544333222110 00 1122222 111
Q ss_pred hhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhh----hhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHH
Q 006822 387 GAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKK----VGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAI 462 (630)
Q Consensus 387 rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK----~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei 462 (630)
+.-..|++.+.+-|..+.-+...|+--...-++| ++.+.++|+..+.|..--..-..--..+-+-.|++.
T Consensus 162 ------EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~ 235 (596)
T KOG4360|consen 162 ------EALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEEN 235 (596)
T ss_pred ------HHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223445555555555555555554443322222 467788888887543322100011112233467888
Q ss_pred HhHHHHHHHHhhhh
Q 006822 463 WDMETLIEDLKSKV 476 (630)
Q Consensus 463 ~dme~vIEdLk~Kl 476 (630)
+.+++.|-|++-|.
T Consensus 236 skLlsql~d~qkk~ 249 (596)
T KOG4360|consen 236 SKLLSQLVDLQKKI 249 (596)
T ss_pred HHHHHHHHhhHHHH
Confidence 88888888877764
No 268
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=38.79 E-value=8.8e+02 Score=30.31 Aligned_cols=22 Identities=36% Similarity=0.350 Sum_probs=11.2
Q ss_pred hhhhhHHHHHHHHHHHHHHhHh
Q 006822 425 KKVGILENQLRDLEIQLQQAKV 446 (630)
Q Consensus 425 EK~~~LE~QLKEa~~QLqhA~a 446 (630)
+.+..|..++..++..+..+..
T Consensus 777 ~~~~~l~~~i~~~~~~~~~~~~ 798 (1047)
T PRK10246 777 ETLTQLEQLKQNLENQRQQAQT 798 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666655544444443
No 269
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=38.69 E-value=6.9e+02 Score=29.07 Aligned_cols=115 Identities=23% Similarity=0.269 Sum_probs=80.0
Q ss_pred hHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhh-----hhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhh----
Q 006822 458 LYSAIWDMETLIEDLKSKVSKAESKTESVEEQCI-----VLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAAS---- 528 (630)
Q Consensus 458 kysei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~-----~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~ke~t---- 528 (630)
+...=.++-.-|+|.|--.+||=-| +++++.+ -||--..|=+.|-++++..=++|..+|--.-+.--..
T Consensus 356 Ll~~Hr~i~egI~dVKkaAakAg~k--G~~~rF~~slaaEiSalr~erEkEr~~l~~eNk~L~~QLrDTAEAVqAagEll 433 (488)
T PF06548_consen 356 LLARHRRIMEGIEDVKKAAAKAGVK--GAESRFINSLAAEISALRAEREKERRFLKDENKGLQIQLRDTAEAVQAAGELL 433 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHH
Confidence 3334445556677777666666444 5666655 1222233445555555557788888886554444333
Q ss_pred --HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhc
Q 006822 529 --AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYS 574 (630)
Q Consensus 529 --lKeae~Rak~aE~lV~KL~~ErdrLedQl~s~keenK~L~ekld~t 574 (630)
+++++.-+.++++--+..+.+-+++..||-.+|.+++.=..++++-
T Consensus 434 vrl~eaeea~~~a~~r~~~~eqe~ek~~kqiekLK~kh~~Ei~t~kq~ 481 (488)
T PF06548_consen 434 VRLREAEEAASVAQERAMDAEQENEKAKKQIEKLKRKHKMEISTMKQY 481 (488)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999877777654
No 270
>PRK09343 prefoldin subunit beta; Provisional
Probab=38.66 E-value=3.3e+02 Score=25.39 Aligned_cols=77 Identities=17% Similarity=0.298 Sum_probs=39.7
Q ss_pred hhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHH------HHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhH
Q 006822 427 VGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDME------TLIEDLKSKVSKAESKTESVEEQCIVLSEDNFEL 500 (630)
Q Consensus 427 ~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme------~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~EL 500 (630)
...|+.+++|++.=+..=....+++.- |--|-+++ .++.+|..+++..+ .++. .|
T Consensus 30 ~~~le~q~~e~~~~~~EL~~L~~d~~V-----Yk~VG~vlv~qd~~e~~~~l~~r~E~ie-------~~ik-------~l 90 (121)
T PRK09343 30 KSQIDLELREINKALEELEKLPDDTPI-----YKIVGNLLVKVDKTKVEKELKERKELLE-------LRSR-------TL 90 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcchh-----HHHhhHHHhhccHHHHHHHHHHHHHHHH-------HHHH-------HH
Confidence 445566666665333333344444443 66665555 44454444444444 4455 45
Q ss_pred HHHHHHHHhhHHHHHHHHHHHh
Q 006822 501 KNKQSFMRDKIKILESSLNRAN 522 (630)
Q Consensus 501 eEEL~~l~~~lksLE~sl~kA~ 522 (630)
+.....++.+++.++.++.++-
T Consensus 91 ekq~~~l~~~l~e~q~~l~~ll 112 (121)
T PRK09343 91 EKQEKKLREKLKELQAKINEML 112 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566666666666655543
No 271
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=38.18 E-value=2.6e+02 Score=24.08 Aligned_cols=28 Identities=21% Similarity=0.358 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006822 333 NSEVLTMKEKVKSLEEQLKESEIRLQNA 360 (630)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A 360 (630)
+.++.+|+.++.++..++..+..-+...
T Consensus 4 ea~~~~Lr~rLd~~~rk~~~~~~~~k~L 31 (69)
T PF14197_consen 4 EAEIATLRNRLDSLTRKNSVHEIENKRL 31 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777766666665544433
No 272
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=37.28 E-value=5.4e+02 Score=27.47 Aligned_cols=82 Identities=15% Similarity=0.178 Sum_probs=40.1
Q ss_pred HHHHHHHhHHHHHhhhhHHHHHhhcC-----ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHH
Q 006822 306 ELKSKLGDFIEQLKAKDMVLQKLEST-----KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIES 380 (630)
Q Consensus 306 el~sKL~~~~eqL~~k~~~lekl~~s-----~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIel 380 (630)
-+...+.....+|..-+..|...... .+.+......-+..|+.++.+.+.++..+....-...=.|..+..+|..
T Consensus 174 fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~ 253 (362)
T TIGR01010 174 FAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIKS 253 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHH
Confidence 44455555555555555555544443 2344445556666666666666666655543322212234444444444
Q ss_pred HHHHHHh
Q 006822 381 LKESLYG 387 (630)
Q Consensus 381 LKEel~r 387 (630)
|+..+..
T Consensus 254 l~~~i~~ 260 (362)
T TIGR01010 254 LRKQIDE 260 (362)
T ss_pred HHHHHHH
Confidence 4444433
No 273
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=37.21 E-value=3.1e+02 Score=27.15 Aligned_cols=102 Identities=18% Similarity=0.221 Sum_probs=47.1
Q ss_pred HHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh----hHHHHHhHHHHHHHH
Q 006822 306 ELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQT----SQEQLNEMDNFIESL 381 (630)
Q Consensus 306 el~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEe----sE~EVaaLerrIelL 381 (630)
.|+-|.-..+|.|+.--+.-+ ..+-|+..|......|+.+...=...-..+...+.. ..++..+|...|..|
T Consensus 26 ~LmP~VV~vLE~Le~~~~~n~----~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~L 101 (158)
T PF09744_consen 26 GLMPKVVRVLELLESLASRNQ----EHEVELELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDLQSQVEQL 101 (158)
T ss_pred HHHHHHHHHHHHHHHHHHhhh----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566566655543211111 023445556666666665554433322333333322 244555666666666
Q ss_pred HHHHHhhhhhHHHHHHHHHHHhhhhHHHHH
Q 006822 382 KESLYGAESRAESAEEKVTQLTDTNLELSE 411 (630)
Q Consensus 382 KEel~rAEsRa~tAesKle~LseTNdELer 411 (630)
++....-+.++.+......-+.+.-.++.+
T Consensus 102 e~e~r~L~~~~~~~~~q~~rlee~e~~l~~ 131 (158)
T PF09744_consen 102 EEENRQLELKLKNLSDQSSRLEEREAELKK 131 (158)
T ss_pred HHHHHHHHHHhhhhhhhccccchhHHHHHH
Confidence 665555555544444443333333333333
No 274
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=36.92 E-value=3.3e+02 Score=31.85 Aligned_cols=92 Identities=26% Similarity=0.299 Sum_probs=54.2
Q ss_pred cccchhchhHHHHHHHhHHHHHhhhhHHHHHhhcC---ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh------
Q 006822 297 LNGSLQRESELKSKLGDFIEQLKAKDMVLQKLEST---KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS------ 367 (630)
Q Consensus 297 L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s---~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEes------ 367 (630)
...-..||.-|++--..-+.+|-.+ ++..++. =-.|...|++++...|.+.+....+|..++.+.-..
T Consensus 404 ~~E~esRE~LIk~~Y~~RI~eLt~q---lQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~T 480 (518)
T PF10212_consen 404 SPEEESREQLIKSYYMSRIEELTSQ---LQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELET 480 (518)
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455678877777666666666543 2222221 146788888888877777776666666665543221
Q ss_pred -----HHHHHhHHHHHHHHHHHHHhhhhh
Q 006822 368 -----QEQLNEMDNFIESLKESLYGAESR 391 (630)
Q Consensus 368 -----E~EVaaLerrIelLKEel~rAEsR 391 (630)
+.+++.|.--+-.|-+++.+-...
T Consensus 481 Tr~NYE~QLs~MSEHLasmNeqL~~Q~ee 509 (518)
T PF10212_consen 481 TRRNYEEQLSMMSEHLASMNEQLAKQREE 509 (518)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666655555555555544443
No 275
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=36.48 E-value=8e+02 Score=29.20 Aligned_cols=37 Identities=24% Similarity=0.249 Sum_probs=28.5
Q ss_pred HHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhh
Q 006822 370 QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTN 406 (630)
Q Consensus 370 EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTN 406 (630)
......+.++-|.+.+...+.++..|+.++...-..|
T Consensus 261 k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~ 297 (726)
T PRK09841 261 QAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQR 297 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4446677788888888888888888888887766655
No 276
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=35.94 E-value=5.9e+02 Score=27.49 Aligned_cols=62 Identities=26% Similarity=0.282 Sum_probs=39.7
Q ss_pred HHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhH
Q 006822 461 AIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANI 523 (630)
Q Consensus 461 ei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q 523 (630)
+|.+|-.-|..|-.+..--..|.|..-.-++-+++.+..+.+++..+..++..|| +|.++-|
T Consensus 245 Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe-~LcRaLQ 306 (309)
T PF09728_consen 245 EMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLE-KLCRALQ 306 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHh
Confidence 4555555555555555555666666666677777777777777777777777774 3444433
No 277
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=35.92 E-value=5.9e+02 Score=27.50 Aligned_cols=51 Identities=18% Similarity=0.319 Sum_probs=25.8
Q ss_pred HHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCC
Q 006822 370 QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNN 420 (630)
Q Consensus 370 EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs 420 (630)
++...+-.+.+++..+...-.|+..++.+-..++++-.-+.....-+.+.+
T Consensus 215 eL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf~~~s 265 (269)
T PF05278_consen 215 ELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKFHGKS 265 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 333333334444444444445555555566666666555555555555544
No 278
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=35.50 E-value=9.5e+02 Score=29.78 Aligned_cols=127 Identities=21% Similarity=0.282 Sum_probs=81.0
Q ss_pred HHHHhhhhHHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhh--------h--HHHHHhhcCChhHHHHHHHHHHH
Q 006822 276 AEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAK--------D--MVLQKLESTKNSEVLTMKEKVKS 345 (630)
Q Consensus 276 ~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k--------~--~~lekl~~s~esEv~sLqkKvks 345 (630)
+-.|+|++|.|+.--.-.++. .|..-++.|+--|-+- + .+++-| -+|...|+.+++.
T Consensus 339 ~KYLLgELkaLVaeq~DsE~q---------RLitEvE~cislLPav~g~tniq~EIALA~Qpl----rsENaqLrRrLri 405 (861)
T PF15254_consen 339 LKYLLGELKALVAEQEDSEVQ---------RLITEVEACISLLPAVSGSTNIQVEIALAMQPL----RSENAQLRRRLRI 405 (861)
T ss_pred HHHHHHHHHHHHhccchHHHH---------HHHHHHHHHHHhhhhhhccccchhhhHhhhhhh----hhhhHHHHHHHHH
Confidence 345677777776543333321 2555566666555431 1 122222 4678888889888
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhh
Q 006822 346 LEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLK 417 (630)
Q Consensus 346 LE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Le 417 (630)
|..+|++-+ .-..+... ..+-=|+.+|...+-.|.-.+..+..-.+.-..|.++|.+.++-...+-+-|.
T Consensus 406 lnqqlreqe-~~~k~~~~-~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~ 475 (861)
T PF15254_consen 406 LNQQLREQE-KAEKTSGS-QDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLR 475 (861)
T ss_pred HHHHHHHHH-hhcccCCC-cccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 888888722 22211111 11334888999999999999999888888889999999998866666554443
No 279
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=35.32 E-value=2.6e+02 Score=23.86 Aligned_cols=39 Identities=31% Similarity=0.374 Sum_probs=22.2
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhh
Q 006822 379 ESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLK 417 (630)
Q Consensus 379 elLKEel~rAEsRa~tAesKle~LseTNdELerelk~Le 417 (630)
+.+.+++.+..+--.+++.++..+..-|.+|..+++.|+
T Consensus 14 Q~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~ 52 (61)
T PF08826_consen 14 QAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLK 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555666666666666666665555443
No 280
>PRK11519 tyrosine kinase; Provisional
Probab=35.24 E-value=6.4e+02 Score=29.93 Aligned_cols=38 Identities=24% Similarity=0.198 Sum_probs=26.6
Q ss_pred HHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhch
Q 006822 267 GRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRE 304 (630)
Q Consensus 267 er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~RE 304 (630)
.|.-.+.++.+.|..-...+..+|+..|..|.....+.
T Consensus 260 ~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~ 297 (719)
T PRK11519 260 RKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDK 297 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 35556777888888888888888777777776654443
No 281
>PRK15396 murein lipoprotein; Provisional
Probab=35.21 E-value=1.4e+02 Score=26.53 Aligned_cols=43 Identities=19% Similarity=0.229 Sum_probs=27.6
Q ss_pred HHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHH
Q 006822 354 EIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAE 396 (630)
Q Consensus 354 ~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAe 396 (630)
..+.+..+++.+...+.+.++..-++.-+++..||-.|+++--
T Consensus 31 ssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~~ 73 (78)
T PRK15396 31 SSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQA 73 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444556666777777778888888888887644
No 282
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=35.11 E-value=3.2e+02 Score=32.62 Aligned_cols=33 Identities=15% Similarity=0.064 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC
Q 006822 543 VMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (630)
Q Consensus 543 V~KL~~ErdrLedQl~s~keenK~L~ekld~tk 575 (630)
+..+..++++|+..|...+++...|..+|.+++
T Consensus 476 i~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 476 IRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666666666554
No 283
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=33.85 E-value=5.7e+02 Score=26.70 Aligned_cols=45 Identities=20% Similarity=0.303 Sum_probs=38.3
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHH
Q 006822 368 QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEE 412 (630)
Q Consensus 368 E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELere 412 (630)
.+.|.+|++.|...+.+-.+.+..+......+.-|-...+++-++
T Consensus 59 ~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 59 NQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999988888888888887777777666
No 284
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=33.28 E-value=7.1e+02 Score=27.62 Aligned_cols=76 Identities=18% Similarity=0.241 Sum_probs=36.4
Q ss_pred HHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHH
Q 006822 353 SEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILEN 432 (630)
Q Consensus 353 s~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~ 432 (630)
|...+..|++.+.+++..+..+...+...+ .....+..+ .+..+..++.|-.. |-.++...-+.++..-.
T Consensus 89 y~~al~qAea~la~a~~~~~~~~a~~~~~~-------A~i~~a~a~--~l~~a~~~~~R~~~-L~~~g~vs~~~~~~a~~ 158 (352)
T COG1566 89 YRAALEQAEAALAAAEAQLRNLRAQLASAQ-------ALIAQAEAQ--DLDQAQNELERRAE-LAQRGVVSREELDRARA 158 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH--HHHHHHHHHHHHHH-HHhcCcccHHHHHHHHH
Confidence 444555555555554444444444444444 444444443 55566666666544 43334333344444444
Q ss_pred HHHHHH
Q 006822 433 QLRDLE 438 (630)
Q Consensus 433 QLKEa~ 438 (630)
.+..++
T Consensus 159 a~~~A~ 164 (352)
T COG1566 159 ALQAAE 164 (352)
T ss_pred HHHHHH
Confidence 444333
No 285
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=32.85 E-value=9.9e+02 Score=29.17 Aligned_cols=305 Identities=16% Similarity=0.173 Sum_probs=0.0
Q ss_pred hHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhchhHHHHHHHh
Q 006822 234 ISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGD 313 (630)
Q Consensus 234 L~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~ 313 (630)
|.++-..|..|..++...+.|.+.+.-...-+-.-+ +||..+..+|+.....=--=+.+|+.
T Consensus 22 l~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~------------------~rl~~~~~~~~~~~~~~e~~~~~lr~ 83 (717)
T PF09730_consen 22 LQESASKEAYLQQRILELENELKQLRQELSNVQAEN------------------ERLSQLNQELRKECEDLELERKRLRE 83 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHH
Q 006822 314 FIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAE 393 (630)
Q Consensus 314 ~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~ 393 (630)
-+.+++.|+.-|-.--+.=++|.-+|||-|.. |+.++-.....+..+-..++++.-++..++++-.=-.-||..++
T Consensus 84 e~ke~K~rE~rll~dyselEeENislQKqvs~----Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qle 159 (717)
T PF09730_consen 84 EIKEYKFREARLLQDYSELEEENISLQKQVSV----LKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLE 159 (717)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhhhHHHHHHhhhhhcCCCCc--------------------------------------------------
Q 006822 394 SAEEKVTQLTDTNLELSEEINFLKGNNDSN-------------------------------------------------- 423 (630)
Q Consensus 394 tAesKle~LseTNdELerelk~Lesrs~~d-------------------------------------------------- 423 (630)
.|..=+..=-+.--.|.+++....+.....
T Consensus 160 EALesl~~EReqk~~LrkEL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 239 (717)
T PF09730_consen 160 EALESLKSEREQKNALRKELDQHLNIESISYLSNLAISLDGLKFSEDPRAATEPNNDDEEENGGLNGGPGLAKGNGDNRM 239 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCccccccccchhhcccccccccccccccCCCCchhhhcchhhccchhccccccccc
Q ss_pred ---------------------------hhhhhh-----------HHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhH
Q 006822 424 ---------------------------TKKVGI-----------LENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDM 465 (630)
Q Consensus 424 ---------------------------eEK~~~-----------LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dm 465 (630)
-.|+.. |-..|+++..||+|+......-.++-+-+..-+.-+
T Consensus 240 ~~~~~~~~~~p~~~lv~DLfSEl~~~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL 319 (717)
T PF09730_consen 240 STPRKSESFSPAPSLVSDLFSELNLSEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDAL 319 (717)
T ss_pred CCCCCCCCCCCCCcccchhhhhcchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH-------------------------------HHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHH
Q 006822 466 ETL-------------------------------IEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKIL 514 (630)
Q Consensus 466 e~v-------------------------------IEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksL 514 (630)
-.+ ++=|+.++..|.+. ++ .|..||+.++.++..+
T Consensus 320 ~~l~~~ke~~~~~d~~~~~~s~~d~~~ye~Di~~~eiLe~Ky~vav~E-------v~-------~Lk~ELk~Lk~k~~~~ 385 (717)
T PF09730_consen 320 RKLQEDKEQQSAEDSEKERDSHEDGDYYEVDINGLEILECKYKVAVSE-------VI-------QLKAELKALKSKYNEL 385 (717)
T ss_pred hhhccchhhhhhhhcccccccccccchhhhccccHHHHHHHHHHHHHH-------HH-------HHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhc
Q 006822 515 ESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYS 574 (630)
Q Consensus 515 E~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQl~s~keenK~L~ekld~t 574 (630)
+..-.....+=..-+.++..+....+..+..-...+..|+.+|.....--..-...|..+
T Consensus 386 ~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsA 445 (717)
T PF09730_consen 386 EERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRALSKLAGESQGSLNSA 445 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHH
No 286
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=32.60 E-value=1e+02 Score=25.87 Aligned_cols=38 Identities=16% Similarity=0.313 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhh
Q 006822 377 FIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEIN 414 (630)
Q Consensus 377 rIelLKEel~rAEsRa~tAesKle~LseTNdELerelk 414 (630)
||.+|+.++.+-++-..+.......++++.+.+++-.+
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk 38 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIEENVK 38 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777777777777777777777776654
No 287
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=32.42 E-value=9.1e+02 Score=28.62 Aligned_cols=39 Identities=26% Similarity=0.327 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcc
Q 006822 260 EAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLN 298 (630)
Q Consensus 260 E~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~ 298 (630)
+.....|.+|-.+.+..+-++.-..++..|++-++|.++
T Consensus 157 ~~~~~~y~~w~~~~~~l~~~~~~~~e~~~~~d~L~fq~~ 195 (557)
T COG0497 157 EAYQEAYQAWKQARRELEDLQEKERERAQRADLLQFQLE 195 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667899999999999999999999999988888764
No 288
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=32.39 E-value=6.1e+02 Score=26.58 Aligned_cols=37 Identities=5% Similarity=-0.158 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHhhcCCCCcceecc
Q 006822 548 TQRELIQKQVYSLTSENKLLVEKLQYSGKSSSATMYN 584 (630)
Q Consensus 548 ~ErdrLedQl~s~keenK~L~ekld~tkk~~~~~~~~ 584 (630)
.+++.++.++...+.........++.+.--+|+.-+.
T Consensus 178 ~~~~~~~~~l~~~~~~l~~a~~~l~~~~I~AP~dG~V 214 (331)
T PRK03598 178 QDIAQAKASLAQAQAALAQAELNLQDTELIAPSDGTI 214 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCEEECCCCeEE
Confidence 4566677777777777788888888887777776554
No 289
>PRK10698 phage shock protein PspA; Provisional
Probab=32.32 E-value=5.7e+02 Score=26.23 Aligned_cols=57 Identities=16% Similarity=0.197 Sum_probs=40.9
Q ss_pred HHHHhHHHHhh---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhc
Q 006822 518 LNRANIEKAAS---AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYS 574 (630)
Q Consensus 518 l~kA~q~ke~t---lKeae~Rak~aE~lV~KL~~ErdrLedQl~s~keenK~L~ekld~t 574 (630)
...|..+|..| +..++....-....|.+|...+.+|+..|...+.+.+.|.......
T Consensus 87 Ar~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A 146 (222)
T PRK10698 87 ARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAA 146 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555 4455566677778888888888888888888888888887766644
No 290
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=32.20 E-value=4.3e+02 Score=29.94 Aligned_cols=86 Identities=19% Similarity=0.217 Sum_probs=47.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhH------------------HHHHhHHHHHHHHHHHHHhhhhhHHH
Q 006822 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQ------------------EQLNEMDNFIESLKESLYGAESRAES 394 (630)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE------------------~EVaaLerrIelLKEel~rAEsRa~t 394 (630)
.+++..|++++..++.++...+.++..+.+.+.-.+ ..++.+.....-+.+.+...-.+...
T Consensus 70 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (525)
T TIGR02231 70 PERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDRE 149 (525)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777777777777766555544432110 02333444444445555555555555
Q ss_pred HHHHHHHHhhhhHHHHHHhhhhhc
Q 006822 395 AEEKVTQLTDTNLELSEEINFLKG 418 (630)
Q Consensus 395 AesKle~LseTNdELerelk~Les 418 (630)
+..++..+.+.-..+.+++..|.+
T Consensus 150 ~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 150 AERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 555555555555555555554443
No 291
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=31.99 E-value=70 Score=30.64 Aligned_cols=81 Identities=19% Similarity=0.306 Sum_probs=21.8
Q ss_pred hhHHhHHHHHHHHHhhhhcccceeccccc---hhhHHHH--HHHhHhhhhhhH--hhHHHH-----HHHHHHHHH---hh
Q 006822 107 SELREVERLLDTIHVEIVNVHHKISSCKH---LREVFTI--MEKMEKKLHDCE--GSLKES-----QEHVSELKM---QS 171 (630)
Q Consensus 107 sEv~ele~~~~~lq~~I~~~~~~~~s~~~---~~~~f~~--~~~~~~kL~~~~--~sLkq~-----qe~~~ei~~---qs 171 (630)
+||.+|=.-+..+..+|.-.-.++-|-.| .-++|.| |+.|-++++.|+ ..|.+. ..+|+.=.. -.
T Consensus 6 kEi~~l~~~lk~~~~~i~ailek~~s~~~~~e~lEsiAAKIIkDisdkIdkCeC~Kelle~Lk~q~d~~iip~~~~~~~~ 85 (121)
T PF03310_consen 6 KEISELIQELKKIESDIKAILEKLQSTEQDQENLESIAAKIIKDISDKIDKCECNKELLEALKKQPDKQIIPSPEEDSKG 85 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHHHHHHHHT-TTHHHHHHHHT-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHhcCCCCCcCCCCCCCCCC
Confidence 34444444444444444444344333333 2334444 555566666652 111111 222322222 24
Q ss_pred HhhhhhhhhcccCCCccc
Q 006822 172 AKFQRVLSYFIHGNNDEA 189 (630)
Q Consensus 172 a~f~r~~~~~~~~~~~~~ 189 (630)
.+|++ -+|.||++||.
T Consensus 86 ~~~~k--YSyPN~~VGne 101 (121)
T PF03310_consen 86 SSLQK--YSYPNWNVGNE 101 (121)
T ss_dssp ------------------
T ss_pred CCCcc--cCCCCCCCCch
Confidence 78888 34679999885
No 292
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.86 E-value=9.6e+02 Score=28.71 Aligned_cols=49 Identities=24% Similarity=0.272 Sum_probs=31.7
Q ss_pred hhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHH
Q 006822 387 GAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLE 438 (630)
Q Consensus 387 rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~ 438 (630)
++-++...-..|.--..+-+.++-.+++-+++. ++.|+..||.+.+.-.
T Consensus 428 ~e~~~y~de~~kaqaevdrlLeilkeveneKnD---kdkkiaeler~~kdqn 476 (654)
T KOG4809|consen 428 KEASYYRDECGKAQAEVDRLLEILKEVENEKND---KDKKIAELERHMKDQN 476 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc---ccchhhhcCchhhhhh
Confidence 333333333444444566677777788888875 5688898988877554
No 293
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=31.71 E-value=7.8e+02 Score=27.86 Aligned_cols=52 Identities=35% Similarity=0.433 Sum_probs=28.4
Q ss_pred hhhhHHHHHHHHHHHHHHh--------HhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhh
Q 006822 426 KVGILENQLRDLEIQLQQA--------KVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAE 480 (630)
Q Consensus 426 K~~~LE~QLKEa~~QLqhA--------~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE 480 (630)
|...||.|+-+. +||+++ -+..|+...=|+ |+-++|+.-+||-.+++++|-|
T Consensus 259 R~erLEeqlNd~-~elHq~Ei~~LKqeLa~~EEK~~Yqs--~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 259 RYERLEEQLNDL-TELHQNEIYNLKQELASMEEKMAYQS--YERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHH
Confidence 556677777665 344433 344444433333 5566666666665555555444
No 294
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=31.63 E-value=5.4e+02 Score=25.76 Aligned_cols=32 Identities=19% Similarity=0.328 Sum_probs=13.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 006822 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACF 364 (630)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~akl 364 (630)
+.|+..-...+..+|+.|..=+.+|..-...+
T Consensus 70 E~E~~~~~~el~~~E~rl~~rE~~L~~~~~~L 101 (201)
T PF12072_consen 70 ERELKERRKELQRLEKRLQQREEQLDRRLEQL 101 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444333333
No 295
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=31.61 E-value=2.3e+02 Score=24.01 Aligned_cols=46 Identities=20% Similarity=0.408 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHH
Q 006822 338 TMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKE 383 (630)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE 383 (630)
.+++|+..+|..++................+..+..++..|..+++
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~ 48 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKS 48 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666665554444333333333334444455555544443
No 296
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=31.55 E-value=3.9e+02 Score=25.64 Aligned_cols=19 Identities=21% Similarity=0.277 Sum_probs=12.7
Q ss_pred HHHhhhhHHhhhcccchhc
Q 006822 285 EMLGRFQIVQFNLNGSLQR 303 (630)
Q Consensus 285 el~gkLq~~qf~L~as~~R 303 (630)
..+.++|..|..|.....+
T Consensus 10 ~~l~q~QqLq~ql~~~~~q 28 (119)
T COG1382 10 AQLAQLQQLQQQLQKVILQ 28 (119)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556777777777766554
No 297
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=31.35 E-value=1.8e+02 Score=31.11 Aligned_cols=48 Identities=19% Similarity=0.243 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHH
Q 006822 350 LKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEE 397 (630)
Q Consensus 350 Ldes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAes 397 (630)
+.....++++++..+....++-++|+..|+--+-+++|++-|+.+-.+
T Consensus 171 i~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~ 218 (267)
T PF10234_consen 171 IKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQS 218 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444455555555556777889999999999999999999988653
No 298
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=30.88 E-value=4.4e+02 Score=27.17 Aligned_cols=121 Identities=21% Similarity=0.281 Sum_probs=61.4
Q ss_pred ccchHHHHhhhhHHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhcC--------------ChhHHH
Q 006822 272 AENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLEST--------------KNSEVL 337 (630)
Q Consensus 272 AENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s--------------~esEv~ 337 (630)
++|+.+|++.-..+- .|==+. .+.-|..+||.==+.-....+++|.+.+....|.-+. ++.|..
T Consensus 5 ~~~~e~ivl~~~~eq-NrP~ss-q~v~~~lq~e~lgktavqk~Ld~La~~Gki~~K~YGKqKIY~a~QDqF~~~~~eel~ 82 (201)
T KOG4603|consen 5 AEDAEGIVLRYLQEQ-NRPYSS-QDVFGNLQREHLGKTAVQKTLDQLAQQGKIKEKMYGKQKIYFADQDQFDMVSDEELQ 82 (201)
T ss_pred ccccHHHHHHHHHHh-cCCCch-HHHHHHHHHHhccchHHHHHHHHHHHcCchhHHhccceeeEeecHHhhcCCChHHHH
Confidence 456666666544331 111111 1233444455412333456678888877777766655 345555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHH--HHHhHHHHHHHHHHHHHhhhhhHHH
Q 006822 338 TMKEKVKSLEEQLKESEIRLQNANACFQTSQE--QLNEMDNFIESLKESLYGAESRAES 394 (630)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~aklEesE~--EVaaLerrIelLKEel~rAEsRa~t 394 (630)
-|-.++.-|+.++....-......+.+-...+ .+-.|+..|+.|+..+..-++|+.+
T Consensus 83 ~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~ 141 (201)
T KOG4603|consen 83 VLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKN 141 (201)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555554433322222222221111 2335667777777777777666644
No 299
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=30.28 E-value=2.4e+02 Score=27.18 Aligned_cols=56 Identities=23% Similarity=0.375 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh--hhhHHHHHhHHHHHHHHHHHHHhhh
Q 006822 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACF--QTSQEQLNEMDNFIESLKESLYGAE 389 (630)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~akl--EesE~EVaaLerrIelLKEel~rAE 389 (630)
.++..|++.+..+..+.+.....|....... ++....|..+...|..++..+..-.
T Consensus 79 ~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 79 AEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666655544443 3334455555555555555555444
No 300
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=30.18 E-value=3.7e+02 Score=26.35 Aligned_cols=62 Identities=21% Similarity=0.290 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhh-hHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 006822 339 MKEKVKSLEEQLKESEIRLQNANACFQT-SQEQLNEMDNFIESLKESLYGAESRAESAEEKVT 400 (630)
Q Consensus 339 LqkKvksLE~qLdes~eQL~~A~aklEe-sE~EVaaLerrIelLKEel~rAEsRa~tAesKle 400 (630)
+-.++-.+++.++....|...+....+. ..++....+..|+.|+.++.+++.-.+.-..+++
T Consensus 123 li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~ 185 (192)
T PF05529_consen 123 LIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKKQSE 185 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433322222 2345556666677777777765554444443333
No 301
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=29.97 E-value=79 Score=25.91 Aligned_cols=31 Identities=29% Similarity=0.343 Sum_probs=21.0
Q ss_pred hhhhhhccchhhHHHHHHHHHhhHHHHHHHH
Q 006822 488 EQCIVLSEDNFELKNKQSFMRDKIKILESSL 518 (630)
Q Consensus 488 sKc~~Lse~N~ELeEEL~~l~~~lksLE~sl 518 (630)
.++..|+..|..|..++..+...+..|....
T Consensus 33 ~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 33 EKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3355566666677777778877777776554
No 302
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=29.89 E-value=5.3e+02 Score=31.27 Aligned_cols=70 Identities=24% Similarity=0.303 Sum_probs=51.4
Q ss_pred HHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhHh
Q 006822 371 LNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKV 446 (630)
Q Consensus 371 VaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~a 446 (630)
-..+++.|+.|+.+....+.+...+.....++.+...+++++...|+.+ |-..++.-.++++.-+..|+.
T Consensus 515 ~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~------~~~~~~~~~~~a~~~l~~a~~ 584 (782)
T PRK00409 515 KEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEE------EDKLLEEAEKEAQQAIKEAKK 584 (782)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 3478888888888888888888888888888888888888888888764 445555555555544444443
No 303
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=29.02 E-value=7.5e+02 Score=26.57 Aligned_cols=134 Identities=19% Similarity=0.279 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHH
Q 006822 461 AIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMM 540 (630)
Q Consensus 461 ei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~ke~tlKeae~Rak~aE 540 (630)
+..||----+++|.|+. ++-.|=..+...+..||+..+..+.+ +|.++.-.-..+
T Consensus 129 ~~~d~ke~~ee~kekl~---------------------E~~~EkeeL~~eleele~e~ee~~er----lk~le~E~s~Le 183 (290)
T COG4026 129 EYMDLKEDYEELKEKLE---------------------ELQKEKEELLKELEELEAEYEEVQER----LKRLEVENSRLE 183 (290)
T ss_pred hhhHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHhhcCCCCcceeccCC---CCCCcce-eeccCCCcccccccchHH
Q 006822 541 EMVMQLATQRELIQKQVYSLTSE-----NKLLVEKLQYSGKSSSATMYNAG---DTDDKEL-LINPTNNLAGATVKTSED 611 (630)
Q Consensus 541 ~lV~KL~~ErdrLedQl~s~kee-----nK~L~ekld~tkk~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~ 611 (630)
....+|--++.+|.+...-+-.+ --.+++--..|-..+|-++-+-| +.++++. .+..+-..++ +.-+|
T Consensus 184 E~~~~l~~ev~~L~~r~~ELe~~~El~e~~~i~dl~~et~~l~p~die~~~~~~~~~e~e~~i~lg~~~iaa---psREd 260 (290)
T COG4026 184 EMLKKLPGEVYDLKKRWDELEPGVELPEEELISDLVKETLNLAPKDIEGQGYIYAEDEKEVEILLGTVYIAA---PSRED 260 (290)
T ss_pred HHHHhchhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhccCchhccceeeeecccccccceeeeeeeeec---CchHH
Q ss_pred HHHHHHhhhhc
Q 006822 612 AVSLMKSVQAG 622 (630)
Q Consensus 612 ~~~~~~~~~~~ 622 (630)
||..++-+..|
T Consensus 261 ave~l~iik~a 271 (290)
T COG4026 261 AVEELEIIKEA 271 (290)
T ss_pred HHHHHHHHHHH
No 304
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=28.84 E-value=96 Score=25.50 Aligned_cols=39 Identities=23% Similarity=0.246 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCCCcce
Q 006822 543 VMQLATQRELIQKQVYSLTSENKLLVEKLQYSGKSSSAT 581 (630)
Q Consensus 543 V~KL~~ErdrLedQl~s~keenK~L~ekld~tkk~~~~~ 581 (630)
..++..++..|+.++..++.+|..|..+++..++.|.+.
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~i 57 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYI 57 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 456778888888888888888888888888886666543
No 305
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=28.60 E-value=7.5e+02 Score=26.94 Aligned_cols=68 Identities=28% Similarity=0.270 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhhc----CCCCcceec--cCCCCCCcceeeccCCCcccccccchHHHHHHHHhhhhc
Q 006822 550 RELIQKQVYSLTSENKLLVEKLQYS----GKSSSATMY--NAGDTDDKELLINPTNNLAGATVKTSEDAVSLMKSVQAG 622 (630)
Q Consensus 550 rdrLedQl~s~keenK~L~ekld~t----kk~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (630)
.+|+...+..+..+...|-+.+.+. .++--+.+. .+|++.+ .|.|.-.++.+.-+.++..+++++-.|
T Consensus 142 lEr~K~~~d~L~~e~~~Lre~L~~rdeli~khGlVlv~~~~ngd~~~-----~~~~~~~~~~~~vs~e~a~~L~~aG~g 215 (302)
T PF09738_consen 142 LERQKRAHDSLREELDELREQLKQRDELIEKHGLVLVPDATNGDTSD-----EPNNVGHPKRALVSQEAAQLLESAGDG 215 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCeeeCCCCCCCcccc-----CccccCCCcccccchhhhhhhcccCCC
Confidence 3344444444444444444444433 455544443 3333332 345555667777778888888887443
No 306
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=27.57 E-value=3.8e+02 Score=22.72 Aligned_cols=69 Identities=19% Similarity=0.321 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhH-----hhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 006822 334 SEVLTMKEKVKSLEEQLKESEIRLQNAN-----ACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQL 402 (630)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~-----aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~L 402 (630)
.++.....++..|+..+..+...+.... ..+-....-+..+...|..++..+..++.....+...+..+
T Consensus 12 ~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a 85 (123)
T PF02050_consen 12 QELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEA 85 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 307
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=27.10 E-value=3.6e+02 Score=29.82 Aligned_cols=44 Identities=23% Similarity=0.369 Sum_probs=30.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHH
Q 006822 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDN 376 (630)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLer 376 (630)
.+.|.-||+|+..|+.+|.++..+|+.++..|.=+++.-+=|+.
T Consensus 174 ~D~v~LLqkk~~~l~~~l~~~~~eL~~~~k~L~faqekn~Llqs 217 (323)
T PF08537_consen 174 SDRVILLQKKIDELEERLNDLEKELEITKKDLKFAQEKNALLQS 217 (323)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888888888888888888888777666544444333333
No 308
>PRK11020 hypothetical protein; Provisional
Probab=26.90 E-value=2.2e+02 Score=27.33 Aligned_cols=51 Identities=18% Similarity=0.288 Sum_probs=38.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006822 500 LKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSE 563 (630)
Q Consensus 500 LeEEL~~l~~~lksLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQl~s~kee 563 (630)
+..||..+-++|..+.-++..|..+-+. ..+.|+..|++.|..+|.+++..
T Consensus 3 ~K~Eiq~L~drLD~~~~Klaaa~~rgd~-------------~~i~qf~~E~~~l~k~I~~lk~~ 53 (118)
T PRK11020 3 EKNEIKRLSDRLDAIRHKLAAASLRGDA-------------EKYAQFEKEKATLEAEIARLKEV 53 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCH-------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888777776666665543 45778888888888888887754
No 309
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=26.70 E-value=1.7e+02 Score=26.46 Aligned_cols=60 Identities=20% Similarity=0.308 Sum_probs=51.6
Q ss_pred hhhhhhh-hhHhhHHHhhhHHHHHhhhhhh---hHHHHHHHHHHHHHHHHHHhccchHHHHhhh
Q 006822 223 SLARELD-LEKKISELNQNEEQLKLKLHHT---EQVAFRMEEAAEVVWGRFLEAENSAEVLMGI 282 (630)
Q Consensus 223 Sla~Eld-LEkkL~es~~~eeeLk~kL~~~---eqe~~~lEE~~~~~~er~~EAENa~EvL~g~ 282 (630)
|+|.|+| ||.++..-+...+...-||+.. .....-||+....+.+++-.-|+-+..|++.
T Consensus 2 ~V~~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkE 65 (85)
T PF15188_consen 2 SVAKEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRKE 65 (85)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 5788886 9999999999888888888764 4568899999999999999999999988874
No 310
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=26.45 E-value=7.9e+02 Score=25.99 Aligned_cols=17 Identities=12% Similarity=0.233 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006822 342 KVKSLEEQLKESEIRLQ 358 (630)
Q Consensus 342 KvksLE~qLdes~eQL~ 358 (630)
.+..++.++...+.++.
T Consensus 87 ~l~~a~a~l~~a~a~l~ 103 (346)
T PRK10476 87 TVAQAQADLALADAQIM 103 (346)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444443333
No 311
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=26.17 E-value=1.2e+03 Score=28.07 Aligned_cols=43 Identities=19% Similarity=0.283 Sum_probs=26.9
Q ss_pred hcCCCCcceeccCCCCCCcceeeccCCCcccccccchHHHHHHHHhhhhcceehh
Q 006822 573 YSGKSSSATMYNAGDTDDKELLINPTNNLAGATVKTSEDAVSLMKSVQAGLTFQV 627 (630)
Q Consensus 573 ~tkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (630)
||.--..++|.|. +-...|....+..+-...++++..|++|-+
T Consensus 401 QTGSGKTyTM~G~------------~~~~~Giipral~~lF~~~~~~~~g~~y~~ 443 (670)
T KOG0239|consen 401 QTGSGKTYTMSGP------------TPEDPGIIPRALEKLFRTITSLKSGWKYDK 443 (670)
T ss_pred ccCCCccccccCC------------CcccCCccHHHHHHHHHHHHhhccCceEEe
Confidence 4555555666554 223345555677777788888888877643
No 312
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=26.17 E-value=4.3e+02 Score=22.80 Aligned_cols=20 Identities=30% Similarity=0.620 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006822 338 TMKEKVKSLEEQLKESEIRL 357 (630)
Q Consensus 338 sLqkKvksLE~qLdes~eQL 357 (630)
.|.++...++.+++....++
T Consensus 66 ~L~~~~~~~~~~i~~l~~~~ 85 (106)
T PF01920_consen 66 ELEERIEKLEKEIKKLEKQL 85 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444433333
No 313
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=26.07 E-value=2.3e+02 Score=25.79 Aligned_cols=26 Identities=15% Similarity=0.239 Sum_probs=12.4
Q ss_pred HHHHhHHHHHHHHHHHHHhhhhhHHH
Q 006822 369 EQLNEMDNFIESLKESLYGAESRAES 394 (630)
Q Consensus 369 ~EVaaLerrIelLKEel~rAEsRa~t 394 (630)
..+.++..-++--+++-.||-+|+++
T Consensus 45 ~dv~~a~aaa~aAk~EA~RAN~RiDN 70 (85)
T PRK09973 45 QDMKALRPQIYAAKSEANRANTRLDA 70 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33444444444445555555555543
No 314
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=25.92 E-value=2.7e+02 Score=27.19 Aligned_cols=46 Identities=20% Similarity=0.351 Sum_probs=34.2
Q ss_pred HHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHH
Q 006822 306 ELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKE 352 (630)
Q Consensus 306 el~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLde 352 (630)
.+.+.++....||..++..|..|..+ ...+-.|+.++..|+.+.++
T Consensus 24 ~~~~e~~~~k~ql~~~d~~i~~Lk~~-~~d~eeLk~~i~~lq~~~~~ 69 (155)
T PF06810_consen 24 KVKEERDNLKTQLKEADKQIKDLKKS-AKDNEELKKQIEELQAKNKT 69 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHH
Confidence 34567777788888888888888875 55666778887777777763
No 315
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=25.88 E-value=2.9e+02 Score=26.30 Aligned_cols=50 Identities=24% Similarity=0.377 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHh----hhhhhHHHHHhHHHHHHHHHHHH
Q 006822 336 VLTMKEKVKSLEEQLKESEIRLQNANA----CFQTSQEQLNEMDNFIESLKESL 385 (630)
Q Consensus 336 v~sLqkKvksLE~qLdes~eQL~~A~a----klEesE~EVaaLerrIelLKEel 385 (630)
+.+|+.+++.+..++++|+..-....+ .+++....+.+++..+..||+++
T Consensus 10 ~~~l~~~v~~lRed~r~SEdrsa~SRa~mhrRlDElV~Rv~~lEs~~~~lk~dV 63 (112)
T PF07439_consen 10 LGTLNAEVKELREDIRRSEDRSAASRASMHRRLDELVERVTTLESSVSTLKADV 63 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhH
Confidence 456777777777777766665433222 22333444444444444444443
No 316
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=25.52 E-value=7e+02 Score=27.69 Aligned_cols=44 Identities=20% Similarity=0.250 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhh
Q 006822 373 EMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFL 416 (630)
Q Consensus 373 aLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~L 416 (630)
-+++.++.+=.+...+..++..+..++..++++..+..++++.+
T Consensus 263 ~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~I 306 (359)
T PF10498_consen 263 YINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEI 306 (359)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45667777777788888889999999999999888888888744
No 317
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=25.49 E-value=6.3e+02 Score=30.67 Aligned_cols=48 Identities=25% Similarity=0.293 Sum_probs=38.8
Q ss_pred HhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcC
Q 006822 372 NEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGN 419 (630)
Q Consensus 372 aaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesr 419 (630)
..+++.|+.|+++....+.+...+.....++.+...+++++.+.|+.+
T Consensus 511 ~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~ 558 (771)
T TIGR01069 511 EEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKER 558 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788888888888888888888888888888888888888877764
No 318
>KOG4324 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.47 E-value=4.2e+02 Score=30.56 Aligned_cols=163 Identities=19% Similarity=0.234 Sum_probs=99.3
Q ss_pred HHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCC---------------chhhhhhHHHHHHHHHHHHHHhHhhh
Q 006822 384 SLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDS---------------NTKKVGILENQLRDLEIQLQQAKVSS 448 (630)
Q Consensus 384 el~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~---------------deEK~~~LE~QLKEa~~QLqhA~asa 448 (630)
++.+-++..+....+|. +...++-.+-+.-.+-+.... -+.+...|=.||.++++.+--+....
T Consensus 59 ~v~~l~e~~~~~~~~rn-ae~ea~~v~~e~ed~tss~~dean~mva~aRke~~a~e~~~~ql~~ql~~~dt~~~s~~~ql 137 (476)
T KOG4324|consen 59 KVHNLEEKLQLTETKRN-AESEADRVEVELEDLTSSLFDEANNMVANARKETYASEKRVNQLKKQLVEADTLLSSAQLQL 137 (476)
T ss_pred HHhcCccchhhcccccC-chhhhccccCCCcchhcccccccccccccccccchhhhhhhhhhhHHhhhhhcccchhhhhh
Confidence 34445555566666663 555555555554444433221 14556777777777775554444333
Q ss_pred HhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhh
Q 006822 449 EASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAAS 528 (630)
Q Consensus 449 Eas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~ke~t 528 (630)
..-+. |.. +++-+.=-+-|+..|.++.+-.-.--.+|-+||..-..+..|+.-+. +++.. +--+.
T Consensus 138 ~~Lkv---mhs--ms~r~e~snrl~~eLsrt~t~la~kd~~~d~lS~i~~~~s~e~~Elt-------~sLf~---Ea~Km 202 (476)
T KOG4324|consen 138 DSLKV---MHS--MSDREEGSNRLKEELSRTQTELALKDEECDILSGIRAQLSQELEELT-------ASLFE---EAHKM 202 (476)
T ss_pred hHHHH---Hhh--cchhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhhhhcccchhHHHHH-------HHHHH---HHHHH
Confidence 22222 111 44444455667888888887776667778878877776666665553 33322 11233
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006822 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTS 562 (630)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLedQl~s~ke 562 (630)
+.++..|-++|+.+.+--...|+=|+.++-.++.
T Consensus 203 V~aA~~r~~~~ek~l~Esr~~i~~lqaEv~alk~ 236 (476)
T KOG4324|consen 203 VRAANPRQEFIEKQLTESRLKIDVLQAEVNALKT 236 (476)
T ss_pred hhhcccchhhhhhhhhHhHHHHHHHHHHHHHhHH
Confidence 6788899999999998888888888888776653
No 319
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=25.27 E-value=5e+02 Score=23.28 Aligned_cols=75 Identities=15% Similarity=0.186 Sum_probs=51.5
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhc
Q 006822 499 ELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYS 574 (630)
Q Consensus 499 ELeEEL~~l~~~lksLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQl~s~keenK~L~ekld~t 574 (630)
.|+.=|.-+...+..||...+.-....... -+++.+..-+..--.+|+.+.|........+..-|+.++..|+.+
T Consensus 5 ~le~al~rL~~aid~LE~~v~~r~~~~~~~-~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a 79 (89)
T PF13747_consen 5 SLEAALTRLEAAIDRLEKAVDRRLERDRKR-DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSA 79 (89)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777788888888877766655544 455555555666666777777777777777777777777777643
No 320
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=25.02 E-value=1.1e+03 Score=29.44 Aligned_cols=130 Identities=18% Similarity=0.170 Sum_probs=61.1
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhHhh
Q 006822 368 QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVS 447 (630)
Q Consensus 368 E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~as 447 (630)
.+|.+-|-|++.-|...+-. ++|+. |..-. .+-+=|+-.|++.+ -+|++||+|+-..++
T Consensus 393 rsENaqLrRrLrilnqqlre-qe~~~----k~~~~----~~~n~El~sLqSlN-------~~Lq~ql~es~k~~e----- 451 (861)
T PF15254_consen 393 RSENAQLRRRLRILNQQLRE-QEKAE----KTSGS----QDCNLELFSLQSLN-------MSLQNQLQESLKSQE----- 451 (861)
T ss_pred hhhhHHHHHHHHHHHHHHHH-HHhhc----ccCCC----cccchhhHHHHHHH-------HHHHHHHHHHHHhHH-----
Confidence 45666677776666555433 12211 11111 22233445566653 478889998762222
Q ss_pred hHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhh-----hhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHh
Q 006822 448 SEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESK-----TESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRAN 522 (630)
Q Consensus 448 aEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~R-----aE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~ 522 (630)
.+-..-..++.|||-++.+--|-..- -+..+.|-. ..-.+..+.-|+...=.+++++.-+|+.+.
T Consensus 452 ---------~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~-~d~e~~rik~ev~eal~~~k~~q~kLe~se 521 (861)
T PF15254_consen 452 ---------LLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQ-FDIETTRIKIEVEEALVNVKSLQFKLEASE 521 (861)
T ss_pred ---------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 23333444555555444443332211 111121111 111122344455555557788887777776
Q ss_pred HHHHhh
Q 006822 523 IEKAAS 528 (630)
Q Consensus 523 q~ke~t 528 (630)
-+..-.
T Consensus 522 kEN~iL 527 (861)
T PF15254_consen 522 KENQIL 527 (861)
T ss_pred hhhhHh
Confidence 655544
No 321
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=24.94 E-value=6.9e+02 Score=24.83 Aligned_cols=84 Identities=20% Similarity=0.326 Sum_probs=49.5
Q ss_pred hHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHH--Hhh--HHHHHHhHHHH
Q 006822 464 DMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEK--AAS--AKEVNHRTKLM 539 (630)
Q Consensus 464 dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k--e~t--lKeae~Rak~a 539 (630)
++..=++++|.++...-...+..+.++. ..|.+|-..-...+.+++.. ..| |+++..+--..
T Consensus 31 ~l~~EL~evk~~v~~~I~evD~Le~~er--------------~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~ 96 (159)
T PF05384_consen 31 RLRKELEEVKEEVSEVIEEVDKLEKRER--------------QARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAML 96 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444455665555555444444444 67777765555555555543 334 66777776666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 006822 540 MEMVMQLATQRELIQKQVYSLT 561 (630)
Q Consensus 540 E~lV~KL~~ErdrLedQl~s~k 561 (630)
..-..+|...||.|+..+..+.
T Consensus 97 re~E~qLr~rRD~LErrl~~l~ 118 (159)
T PF05384_consen 97 REREKQLRERRDELERRLRNLE 118 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777777665543
No 322
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=24.85 E-value=2.3e+02 Score=32.68 Aligned_cols=48 Identities=17% Similarity=0.200 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHH
Q 006822 338 TMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESL 385 (630)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel 385 (630)
.-|.|...||++|+...-.++.........+++|..|+..|..|+..+
T Consensus 73 eqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 73 EMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 344566666666665543333222333333444444444455444444
No 323
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=24.74 E-value=4.9e+02 Score=23.01 Aligned_cols=88 Identities=17% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhh
Q 006822 379 ESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSML 458 (630)
Q Consensus 379 elLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mk 458 (630)
.++...+.++++....-..-..... ++.++..-.+.|++. +..++.+|.+.+ .|+.+++.+-.+=+.-
T Consensus 8 ~ev~~sl~~l~~~~~~~~~~~~~~~-~~~e~~~~~~eL~~~-------l~~ie~~L~DL~----~aV~ive~np~kF~l~ 75 (97)
T PF09177_consen 8 DEVQSSLDRLESLYRRWQRLRSDTS-SSEELKWLKRELRNA-------LQSIEWDLEDLE----EAVRIVEKNPSKFNLS 75 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHCC--HHHHHHHHHHHHHH-------HHHHHHHHHHHH----HHHHHHHCCHHHHT-H
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCC-CcHhHHHHHHHHHHH-------HHHHHHHHHHHH----HHHHHHHhCccccCCC
Q ss_pred HHHHHhHHHHHHHHhhhhhh
Q 006822 459 YSAIWDMETLIEDLKSKVSK 478 (630)
Q Consensus 459 ysei~dme~vIEdLk~Kl~r 478 (630)
-.+|.+--..|.+++.++..
T Consensus 76 ~~Ei~~Rr~fv~~~~~~i~~ 95 (97)
T PF09177_consen 76 EEEISRRRQFVSAIRNQIKQ 95 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
No 324
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=24.46 E-value=4.4e+02 Score=28.84 Aligned_cols=59 Identities=24% Similarity=0.239 Sum_probs=52.6
Q ss_pred hHHHHhhhhHHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhcCCh
Q 006822 275 SAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKN 333 (630)
Q Consensus 275 a~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s~e 333 (630)
+--||+-.-+..+-++|.+-..||....-|..|-+|++.-.-.|+.-..-|++|++-+.
T Consensus 106 ~Ekvlk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP 164 (338)
T KOG3647|consen 106 VEKVLKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRP 164 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 34578889999999999999999999999999999999988888888888889988854
No 325
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=24.33 E-value=1.6e+02 Score=27.09 Aligned_cols=71 Identities=18% Similarity=0.316 Sum_probs=40.5
Q ss_pred hhhHHHHHhHHHHHHHHHHHH-HhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHH
Q 006822 365 QTSQEQLNEMDNFIESLKESL-YGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQ 442 (630)
Q Consensus 365 EesE~EVaaLerrIelLKEel-~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLq 442 (630)
+..+.....++.-+++|-..| ..|=.-...|.-....+..-|..+.+.++..+. +++.|..||+..+..++
T Consensus 11 ~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~-------~l~~lq~qL~~LK~v~~ 82 (100)
T PF06428_consen 11 EEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEA-------LLESLQAQLKELKTVME 82 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCH-------CCCHCTSSSSHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 334555555555566655555 445555555555555555666666666654444 36777777777764333
No 326
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=24.32 E-value=2.6e+02 Score=26.70 Aligned_cols=50 Identities=22% Similarity=0.156 Sum_probs=34.6
Q ss_pred HHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcC
Q 006822 370 QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGN 419 (630)
Q Consensus 370 EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesr 419 (630)
.+++...-|.+|++++.+.|.-++.-...+..+.+++.-+.++++....+
T Consensus 35 qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 35 QLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44455556777777777777777777777777777777777766644443
No 327
>PF13514 AAA_27: AAA domain
Probab=24.23 E-value=1.5e+03 Score=28.41 Aligned_cols=63 Identities=14% Similarity=0.241 Sum_probs=42.8
Q ss_pred hhhhhHHhHHHHHHHHHhhhhcccceeccccchhhHHHHHHHhHhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhh
Q 006822 104 ILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSY 180 (630)
Q Consensus 104 ildsEv~ele~~~~~lq~~I~~~~~~~~s~~~~~~~f~~~~~~~~kL~~~~~sLkq~qe~~~ei~~qsa~f~r~~~~ 180 (630)
.+..=|++-|.+.|.+..+-..+... ..+...+......+.+.+..+.+...+.+.|......
T Consensus 527 ~fe~a~~~aD~laD~~~~~a~~~a~~--------------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~ 589 (1111)
T PF13514_consen 527 AFEAAVREADELADRRLREAERAARL--------------AQLRARLEEARARLARAQARLAAAEAALAALEAAWAA 589 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778888888888777666552 1235566666777777777777777777777776654
No 328
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=24.14 E-value=1.1e+03 Score=26.74 Aligned_cols=45 Identities=11% Similarity=0.285 Sum_probs=22.8
Q ss_pred HHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhh
Q 006822 370 QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEIN 414 (630)
Q Consensus 370 EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk 414 (630)
+..-|+-.|--++++--+-+-.++.....|-+-++-+.+|+||++
T Consensus 128 ~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELa 172 (401)
T PF06785_consen 128 DIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELA 172 (401)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHH
Confidence 333444444444444444444455555555555555566666554
No 329
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=23.78 E-value=97 Score=26.12 Aligned_cols=30 Identities=20% Similarity=0.376 Sum_probs=25.3
Q ss_pred hHHHHHhHHHHHHHHHHHHHhhhhhHHHHH
Q 006822 367 SQEQLNEMDNFIESLKESLYGAESRAESAE 396 (630)
Q Consensus 367 sE~EVaaLerrIelLKEel~rAEsRa~tAe 396 (630)
.|+.++.||.+++..+.....||.|+..+.
T Consensus 30 iEqRLa~LE~rL~~ae~ra~~ae~~~~~~k 59 (60)
T PF11471_consen 30 IEQRLAALEQRLQAAEQRAQAAEARAKQAK 59 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 388888999999999999999998887753
No 330
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=23.76 E-value=7.6e+02 Score=24.90 Aligned_cols=46 Identities=17% Similarity=0.346 Sum_probs=23.9
Q ss_pred HHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhh
Q 006822 369 EQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEIN 414 (630)
Q Consensus 369 ~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk 414 (630)
.++..+..++..|+..+.+...+......++..+-.++......+.
T Consensus 63 ~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 63 REIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555444444443
No 331
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=23.73 E-value=5e+02 Score=22.76 Aligned_cols=76 Identities=18% Similarity=0.257 Sum_probs=50.4
Q ss_pred ccchhhHHHHHHHhHhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhhcccCCCcccccccccCCcccccccccccchHH
Q 006822 133 CKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFIHGNNDEALEFSANGQLSNINGKSKMKNADQ 212 (630)
Q Consensus 133 ~~~~~~~f~~~~~~~~kL~~~~~sLkq~qe~~~ei~~qsa~f~r~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~mqt~eq 212 (630)
++.+..+|..+..+.. +..-+-+++-..+..||....+...++..+.... .|+++
T Consensus 2 ~e~lP~i~~~l~~~~~---d~~~~~kd~~~~~~~lk~Klq~ar~~i~~lpgi~----------------------~s~ee 56 (83)
T PF07544_consen 2 IEFLPLIFDILHQISK---DPPLSSKDLDTATGSLKHKLQKARAAIRELPGID----------------------RSVEE 56 (83)
T ss_pred ccccchHHHHHHHHhh---cCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCcc----------------------CCHHH
Confidence 3444555665521111 1455678888889999988888877776644211 37788
Q ss_pred HHHHHHHHHHhhhhhhhhhHh
Q 006822 213 QRHILRMLEKSLARELDLEKK 233 (630)
Q Consensus 213 qR~iLrMLekSla~EldLEkk 233 (630)
|-..++.|+..|++--.+=.+
T Consensus 57 q~~~i~~Le~~i~~k~~~L~~ 77 (83)
T PF07544_consen 57 QEEEIEELEEQIRKKREVLQK 77 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999876555333
No 332
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=23.72 E-value=5.6e+02 Score=26.58 Aligned_cols=76 Identities=21% Similarity=0.310 Sum_probs=37.0
Q ss_pred HHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHH
Q 006822 307 LKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLY 386 (630)
Q Consensus 307 l~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~ 386 (630)
||..|+++-..+.+|..++=.|... +..+.-++...+.++......+..-...++.++.++.-..+.++.|.+++-
T Consensus 15 LKqQLke~q~E~~~K~~Eiv~Lr~q----l~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~ 90 (202)
T PF06818_consen 15 LKQQLKESQAEVNQKDSEIVSLRAQ----LRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLG 90 (202)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhh
Confidence 5666666666666555544444332 233333444444444444444444444455555555555555555554443
No 333
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=23.41 E-value=1.4e+03 Score=27.97 Aligned_cols=301 Identities=22% Similarity=0.258 Sum_probs=0.0
Q ss_pred hHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhchhHHHHHHHh
Q 006822 234 ISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGD 313 (630)
Q Consensus 234 L~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~ 313 (630)
|.+.+..++++..=....-+.+-.||--+..+- ++.-||-+..+=...+..-+.+-..+--+|--..+||=+=.-++
T Consensus 72 lqE~rrle~e~~~lre~sl~qkmrLe~qa~Ele-~l~~ae~agraEae~Lraala~ae~~R~~lEE~~q~ELee~q~~-- 148 (739)
T PF07111_consen 72 LQELRRLEEEVRALRETSLQQKMRLEAQAEELE-ALARAEKAGRAEAEELRAALAGAEVVRKNLEEGSQRELEEAQRL-- 148 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHhhhhhHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHH--
Q ss_pred HHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHH
Q 006822 314 FIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAE 393 (630)
Q Consensus 314 ~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~ 393 (630)
-...|..|...--.++.+|..|+..||+.|.........-. .+++...+.-..|+..++++...+.
T Consensus 149 -------Hqeql~~Lt~aHq~~l~sL~~k~~~Le~~L~~le~~r~~e~-------~~La~~q~e~d~L~~qLsk~~~~le 214 (739)
T PF07111_consen 149 -------HQEQLSSLTQAHQEALASLTSKAEELEKSLESLETRRAGEA-------KELAEAQREADLLREQLSKTQEELE 214 (739)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhHHHHH
Q ss_pred HHHHHHHHHhhhhHHHH----------HHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHH
Q 006822 394 SAEEKVTQLTDTNLELS----------EEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIW 463 (630)
Q Consensus 394 tAesKle~LseTNdELe----------relk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~ 463 (630)
+-.+-+..|-.-.-+.- .++..|... |.-|+.-=--.. +.++=-+- ....+.
T Consensus 215 ~q~tlv~~LR~YvGeq~p~~~~~~~we~Er~~L~~t-------Vq~L~edR~~L~-------~T~ELLqV----RvqSLt 276 (739)
T PF07111_consen 215 AQVTLVEQLRKYVGEQVPPEVHSQAWEPEREELLET-------VQHLQEDRDALQ-------ATAELLQV----RVQSLT 276 (739)
T ss_pred HHHHHHHHHHHHHhhhCCcccccHHHHHHHHHHHHH-------HHHHHHHHHHHH-------HHHHHHHH----HHHHHH
Q ss_pred hHHHHHHHHhhhhhhhhhhhhhhh----hhh---------------hhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHH
Q 006822 464 DMETLIEDLKSKVSKAESKTESVE----EQC---------------IVLSEDNFELKNKQSFMRDKIKILESSLNRANIE 524 (630)
Q Consensus 464 dme~vIEdLk~Kl~rAE~RaE~aE----sKc---------------~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~ 524 (630)
+|+++-| .++.+=-.-.+..| .|| +-|-.--++++..++-+++++.+||..+....++
T Consensus 277 ~IL~LQE---eEL~~Kvqp~d~Le~e~~~K~q~LL~~WREKVFaLmVQLkaQeleh~~~~~qL~~qVAsLQeev~sq~qE 353 (739)
T PF07111_consen 277 DILTLQE---EELCRKVQPSDPLEPEFSRKCQQLLSRWREKVFALMVQLKAQELEHRDSVKQLRGQVASLQEEVASQQQE 353 (739)
T ss_pred HHHHHHH---HHHhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhHHHHHHh-HHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhHHHHHHh
Q 006822 525 KAASAKEVNHR-TKLMMEMVMQ--LATQRELIQKQVYSLTSENKLLVEKLQ 572 (630)
Q Consensus 525 ke~tlKeae~R-ak~aE~lV~K--L~~ErdrLedQl~s~keenK~L~ekld 572 (630)
..--.--+..| |++-..-|.. |+.+..+-++.-..+...+..-...|+
T Consensus 354 qaiLq~SLqDK~AElevERv~sktLQ~ELsrAqea~~~lqqq~~~aee~Lk 404 (739)
T PF07111_consen 354 QAILQHSLQDKAAELEVERVGSKTLQAELSRAQEARRRLQQQTASAEEQLK 404 (739)
T ss_pred HHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 334
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=23.29 E-value=1.2e+03 Score=26.96 Aligned_cols=145 Identities=19% Similarity=0.251 Sum_probs=98.8
Q ss_pred HHHHhh--hhHHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhcC---ChhHHHHHHHHHHHHHHHH
Q 006822 276 AEVLMG--ISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLEST---KNSEVLTMKEKVKSLEEQL 350 (630)
Q Consensus 276 ~EvL~g--~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s---~esEv~sLqkKvksLE~qL 350 (630)
.-||.| ||--+++=|=++--+|..-...=++|+-.|...-++|..-.-+....+.. -.+|+..-...-+.++.++
T Consensus 46 vtvltG~liSA~tLailf~~~~~lr~gVfqlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~ 125 (499)
T COG4372 46 VTVLTGMLISAATLAILFLLNRNLRSGVFQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQEL 125 (499)
T ss_pred hhhhhcchhhHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555 45556666655555555444444566666666666665544433333332 2466777666777788888
Q ss_pred HHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCC
Q 006822 351 KESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNN 420 (630)
Q Consensus 351 des~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs 420 (630)
+...-.+.+|.-.+-....+-.++..++..|-+.--+++..+++-...-+.|-.++.+++...-.|.-++
T Consensus 126 ~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~ 195 (499)
T COG4372 126 AAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRS 195 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887777777666555566777888888888888888888888888888888888888888877777764
No 335
>PF00846 Hanta_nucleocap: Hantavirus nucleocapsid protein; InterPro: IPR002214 Hantaviruses are ssRNA negative-strand viruses. The nucleocapsid protein is an internal protein of the virus particle [, ].; GO: 0019013 viral nucleocapsid; PDB: 2IC9_A 2IC6_A 2K48_A 4FI5_A.
Probab=23.12 E-value=3.7e+02 Score=30.61 Aligned_cols=54 Identities=22% Similarity=0.358 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh------------HHHHHhHHHHHHHHHHHHHh
Q 006822 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS------------QEQLNEMDNFIESLKESLYG 387 (630)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~aklEes------------E~EVaaLerrIelLKEel~r 387 (630)
+.+..||+-+...|.||-.+.-.|.+|....|.- +..|++++.+|.+||..+..
T Consensus 2 ~~~~elq~e~~~~E~qL~~a~qkl~da~~~~e~dpD~~nk~~~~~R~~~v~~~~~Ki~elkr~lAd 67 (428)
T PF00846_consen 2 STLEELQEEITQHEQQLVIARQKLKDAEKQYEKDPDDVNKSTLQQRQSVVSALQDKIAELKRQLAD 67 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466788888899999998888888887776552 56888899999988888765
No 336
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=23.09 E-value=3.3e+02 Score=29.02 Aligned_cols=23 Identities=30% Similarity=0.289 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHHHHhHhhhHhH
Q 006822 429 ILENQLRDLEIQLQQAKVSSEAS 451 (630)
Q Consensus 429 ~LE~QLKEa~~QLqhA~asaEas 451 (630)
.++.++.+++.+++.|.+-.+.+
T Consensus 103 ~~~a~l~~~~~~l~~a~~~l~~a 125 (370)
T PRK11578 103 EVEATLMELRAQRQQAEAELKLA 125 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555554444444333
No 337
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=23.09 E-value=4.3e+02 Score=23.71 Aligned_cols=71 Identities=18% Similarity=0.257 Sum_probs=53.3
Q ss_pred HHHhhHHHHHHHHHHHhHHHHhh-------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCC
Q 006822 506 FMRDKIKILESSLNRANIEKAAS-------AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSGK 576 (630)
Q Consensus 506 ~l~~~lksLE~sl~kA~q~ke~t-------lKeae~Rak~aE~lV~KL~~ErdrLedQl~s~keenK~L~ekld~tkk 576 (630)
.|..+|..|+.-...|..++..- .....-..-+.-.++..+..++++|...+-.+..+|..|.+++....+
T Consensus 31 ~v~~kLneLd~Li~eA~~r~~~~~~~~~~~~~~l~P~~~i~a~l~~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 31 DVVEKLNELDKLIEEAKERKNSGEREKPVWRHSLTPEEDIRAHLAPYKKKEREQLNARLQELEEENEALAEEIQEQRK 108 (109)
T ss_pred hHHHHHHHHHHHHHHHHHhHhccccCCCCCCCCCChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45678888888888888888731 122233344555677788899999999999999999999998876654
No 338
>PRK00295 hypothetical protein; Provisional
Probab=22.67 E-value=4.4e+02 Score=22.50 Aligned_cols=29 Identities=17% Similarity=0.215 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 006822 540 MEMVMQLATQRELIQKQVYSLTSENKLLV 568 (630)
Q Consensus 540 E~lV~KL~~ErdrLedQl~s~keenK~L~ 568 (630)
-+.|.+.++++++|..++..+..+.+.+.
T Consensus 25 n~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 25 NDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35688888899999999998888888765
No 339
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=22.63 E-value=8.4e+02 Score=24.95 Aligned_cols=13 Identities=38% Similarity=0.411 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHH
Q 006822 431 ENQLRDLEIQLQQ 443 (630)
Q Consensus 431 E~QLKEa~~QLqh 443 (630)
.+|-++.-.||..
T Consensus 56 ~~q~~dl~~qL~a 68 (178)
T PF14073_consen 56 SKQNQDLSSQLSA 68 (178)
T ss_pred hhccHHHHHHHHH
Confidence 3344444444433
No 340
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=22.43 E-value=5.5e+02 Score=25.18 Aligned_cols=10 Identities=30% Similarity=0.498 Sum_probs=4.6
Q ss_pred HHHhHHHHHH
Q 006822 461 AIWDMETLIE 470 (630)
Q Consensus 461 ei~dme~vIE 470 (630)
-+.|.-++|-
T Consensus 116 ~I~r~~~li~ 125 (192)
T PF05529_consen 116 VIRRVHSLIK 125 (192)
T ss_pred HHHHHHHHHH
Confidence 4444444444
No 341
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=21.87 E-value=9.6e+02 Score=25.57 Aligned_cols=194 Identities=20% Similarity=0.321 Sum_probs=100.4
Q ss_pred hhHHhHHHHHHHHHhhhhcccceeccccchhhHHHHHHHhHhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhhcc----
Q 006822 107 SELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFI---- 182 (630)
Q Consensus 107 sEv~ele~~~~~lq~~I~~~~~~~~s~~~~~~~f~~~~~~~~kL~~~~~sLkq~qe~~~ei~~qsa~f~r~~~~~~---- 182 (630)
+.+...|.|+-.+-. |-+.+.++..+. -+..+.+.+.+....|.....-+.+|| .|..|.+++...-
T Consensus 139 ~~L~~~E~f~~~l~~-ip~~~~rl~~~~-------~~~~f~~~~~~l~~~l~~l~~a~~~l~-~S~~l~~lL~~iL~~GN 209 (370)
T PF02181_consen 139 ATLGPAEQFLLELSK-IPRLKERLEALL-------FKSEFEEQLEELKEKLEKLEAACEELR-ESKSLRRLLEIILAIGN 209 (370)
T ss_dssp TTB-HHHHHHHHHTT-STTHHHHHHHHH-------HHHTHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHH
T ss_pred HhhccHHHHHHHHHH-HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHH
Confidence 556667777777765 666666654433 334467888888888888888888885 7889999887632
Q ss_pred --cCCC--cccccccccCCcccccccccccchHHHHHHHHHHHHhhhhhhhhhHhhHHHhhhHHHHHhhhhhhhHHHHHH
Q 006822 183 --HGNN--DEALEFSANGQLSNINGKSKMKNADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRM 258 (630)
Q Consensus 183 --~~~~--~~~~~~~e~~~~~~~~~~~~mqt~eqqR~iLrMLekSla~EldLEkkL~es~~~eeeLk~kL~~~eqe~~~l 258 (630)
|+.+ ++..+|.-+.=..- ..+.+.+.....|+.+-+.+.... -+.-....+| ..+
T Consensus 210 ~lN~g~~~g~A~GF~L~sL~kL----~~~Ks~d~~~tLL~~l~~~~~~~~------~~~~~~~~eL-----------~~v 268 (370)
T PF02181_consen 210 FLNGGTPRGNAKGFKLSSLSKL----KDTKSNDNKTTLLHYLVKIVEEKF------PDLLDLEDEL-----------SSV 268 (370)
T ss_dssp HHSTCSTTCS-SEE-GGGGGGC----CCSB-STTTSBHHHHHHHHHHTTS------GGGGGHHHHT-----------TTH
T ss_pred HhccCCCccccceecHHhHHHH----HhcccccCCchHHHHHHHHHHhcC------hHHhccHHHH-----------hhH
Confidence 2222 22222222221111 112222456678888877766521 1111111111 111
Q ss_pred HHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchh---chhHHHHHHHhHHHHHhhhhHHHHHhhcCChhH
Q 006822 259 EEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQ---RESELKSKLGDFIEQLKAKDMVLQKLESTKNSE 335 (630)
Q Consensus 259 EE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~---REsel~sKL~~~~eqL~~k~~~lekl~~s~esE 335 (630)
..++ .- -...+.+..+.+..++..++..+..... -.+....++....+... .+
T Consensus 269 ~~a~---------~~-~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~~~~f~~~~~--------------~~ 324 (370)
T PF02181_consen 269 EKAS---------KV-SLDELEQDIKELEKGLEKIKKELEAIEKDEEDDDKFKEKMKEFLEEAE--------------TK 324 (370)
T ss_dssp HHCC---------TS--HHHHHHHHHHHHHHHHHHHHHHHHCCTTSSTT-THHHHHHHHHHHHH--------------HH
T ss_pred Hhhh---------hh-hHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHH--------------HH
Confidence 1111 11 1334555566666666666666655544 44555666655554443 34
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 006822 336 VLTMKEKVKSLEEQLKESE 354 (630)
Q Consensus 336 v~sLqkKvksLE~qLdes~ 354 (630)
+..|+.....++..++..-
T Consensus 325 ~~~l~~~~~~~~~~~~~~~ 343 (370)
T PF02181_consen 325 LDELQELYEELEEAFKQLL 343 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555554443
No 342
>KOG3958 consensus Putative dynamitin [Cytoskeleton]
Probab=21.55 E-value=1.1e+03 Score=26.39 Aligned_cols=113 Identities=22% Similarity=0.251 Sum_probs=58.4
Q ss_pred hhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHH--HhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHH
Q 006822 425 KKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAI--WDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKN 502 (630)
Q Consensus 425 EK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei--~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeE 502 (630)
-|+..||+.|.+.+ ..+..-+-.||-+..-+ +-.+-.||+|+.|++--- .++.- .+++
T Consensus 191 akVA~LE~Rlt~lE-------~vvg~~~d~~~~lsa~~~~a~vletVe~L~~k~s~l~------~~~ld-------~vEq 250 (371)
T KOG3958|consen 191 AKVAELEKRLTELE-------TVVGCDQDAQNPLSAGLQGACVLETVELLQAKVSALD------LAVLD-------QVEQ 250 (371)
T ss_pred HHHHHHHHHHHHHH-------HHHcCCccccCchhhccCCchHHHHHHHHHHHHHhhC------HHHHH-------HHHH
Confidence 58999999998876 33333333344333321 234456788888866211 12222 4555
Q ss_pred HHHHHHhhHHHHHHHHHHHhHHHHhh------HHHHHHhHHHH----HHHHHHHHHHHHHHHHHHHH
Q 006822 503 KQSFMRDKIKILESSLNRANIEKAAS------AKEVNHRTKLM----MEMVMQLATQRELIQKQVYS 559 (630)
Q Consensus 503 EL~~l~~~lksLE~sl~kA~q~ke~t------lKeae~Rak~a----E~lV~KL~~ErdrLedQl~s 559 (630)
-|..|-+++... +--++++..-..+ +=|+-.|...| -.+|.++ .-+.+||.|...
T Consensus 251 RL~s~lgK~~~I-aEk~~~s~~Da~~d~KV~elye~~qrw~pi~stLP~~V~rl-~al~~LHeqa~~ 315 (371)
T KOG3958|consen 251 RLQSVLGKVNEI-AEKHKASVEDADTDSKVHELYETIQRWSPIASTLPELVQRL-VALKQLHEQAMQ 315 (371)
T ss_pred HHHHHHHHHHHH-HHhhccccccchhhhhHHHHHHHHHhhhhHHHhhHHHHHHH-HHHHHHHHHHHH
Confidence 666666666643 1123333332222 34444443322 3355565 557777777544
No 343
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=21.47 E-value=1.1e+03 Score=26.04 Aligned_cols=63 Identities=16% Similarity=0.285 Sum_probs=36.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHh----HhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHH
Q 006822 333 NSEVLTMKEKVKSLEEQLKESEIRLQNA----NACFQTSQEQLNEMDNFIESLKESLYGAESRAESA 395 (630)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A----~aklEesE~EVaaLerrIelLKEel~rAEsRa~tA 395 (630)
++=+..+++++..+..++...-.+...+ ...++.+...+..|-.+|.+++++-.++|.-...-
T Consensus 24 d~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~sE~~V~~i 90 (383)
T PF04100_consen 24 DELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAEESEQMVQEI 90 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566777777777777665554422 23344455566666666666666665555544333
No 344
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=21.46 E-value=6.6e+02 Score=23.33 Aligned_cols=44 Identities=16% Similarity=0.217 Sum_probs=31.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhc
Q 006822 531 EVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYS 574 (630)
Q Consensus 531 eae~Rak~aE~lV~KL~~ErdrLedQl~s~keenK~L~ekld~t 574 (630)
++....+++++-+..|...++.|+.+|.........+...+.+.
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l 134 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQL 134 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556677777777777777777777777777777777666654
No 345
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=21.35 E-value=8.4e+02 Score=25.61 Aligned_cols=29 Identities=24% Similarity=0.344 Sum_probs=13.2
Q ss_pred hccchhhHHHHHHHHHhhHHHHHHHHHHH
Q 006822 493 LSEDNFELKNKQSFMRDKIKILESSLNRA 521 (630)
Q Consensus 493 Lse~N~ELeEEL~~l~~~lksLE~sl~kA 521 (630)
|-+.|..+++++.-++..+++....+++|
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~ 177 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKA 177 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 33444555555555444444444444333
No 346
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=21.15 E-value=1e+02 Score=30.12 Aligned_cols=92 Identities=18% Similarity=0.230 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCCCcceeccCCCCCCcceee-----ccCCC-cccccccch
Q 006822 536 TKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSGKSSSATMYNAGDTDDKELLI-----NPTNN-LAGATVKTS 609 (630)
Q Consensus 536 ak~aE~lV~KL~~ErdrLedQl~s~keenK~L~ekld~tkk~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~ 609 (630)
.+-+|+++.++..+++.++.++....++.+.|..+++.+-...-+.=|++|+.-..++=| +..|+ .-=+..-.-
T Consensus 41 ~~~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~kvgvvRYnAF~dmGg~LSFslAlLD~~~nGvVltsI~~R 120 (151)
T PF14584_consen 41 GKNLEDLLNELFDQIDELKEELEELEKRIEELEEKLRNCVQKVGVVRYNAFEDMGGDLSFSLALLDDNNNGVVLTSIHSR 120 (151)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEEEccCcccccccceeeeEEEeCCCCEEEEEeeecC
Confidence 335688999999999999999999999999999999999888889999999876555433 22222 222333344
Q ss_pred HHHHHHHHhhhhcceehh
Q 006822 610 EDAVSLMKSVQAGLTFQV 627 (630)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~ 627 (630)
+++....|.|..|-+...
T Consensus 121 e~s~~YaK~I~~G~S~~~ 138 (151)
T PF14584_consen 121 EESRTYAKPIVNGQSSYP 138 (151)
T ss_pred CCcEEEEEEecCCccccc
Confidence 555566666776665443
No 347
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=21.05 E-value=6.1e+02 Score=22.78 Aligned_cols=28 Identities=18% Similarity=0.121 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006822 536 TKLMMEMVMQLATQRELIQKQVYSLTSE 563 (630)
Q Consensus 536 ak~aE~lV~KL~~ErdrLedQl~s~kee 563 (630)
-.-|+..|++|..-+++|..-...+-.+
T Consensus 68 Id~Ie~~V~~LE~~v~~LD~ysk~LE~k 95 (99)
T PF10046_consen 68 IDQIEEQVTELEQTVYELDEYSKELESK 95 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443333333
No 348
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=20.81 E-value=1.2e+03 Score=27.35 Aligned_cols=31 Identities=23% Similarity=0.358 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHhHhhhHhHHHHHhhhHH
Q 006822 430 LENQLRDLEIQLQQAKVSSEASQEQQSMLYS 460 (630)
Q Consensus 430 LE~QLKEa~~QLqhA~asaEas~eqQ~mkys 460 (630)
++++-.-++.||+.|+..||-.+.+++-.+.
T Consensus 352 ~~kkrqnaekql~~Ake~~eklkKKrssv~g 382 (575)
T KOG4403|consen 352 YNKKRQNAEKQLKEAKEMAEKLKKKRSSVFG 382 (575)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhcchhe
Confidence 3444445556666666888888875554443
No 349
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=20.80 E-value=54 Score=29.59 Aligned_cols=63 Identities=22% Similarity=0.334 Sum_probs=50.1
Q ss_pred HHHhhhhcccceeccccchhhHHHHHHHhHhhhhhhHhh---HHHHHHHHHHHHHhhHhhhhhhhhcccCCC
Q 006822 118 TIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGS---LKESQEHVSELKMQSAKFQRVLSYFIHGNN 186 (630)
Q Consensus 118 ~lq~~I~~~~~~~~s~~~~~~~f~~~~~~~~kL~~~~~s---Lkq~qe~~~ei~~qsa~f~r~~~~~~~~~~ 186 (630)
++..+|....+++++|.+-- +.|+.+|+..+-| =+.+.+....|+.+..+.++-+..++..|.
T Consensus 2 ~V~~eId~lEekl~~cr~~l------e~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkENr 67 (85)
T PF15188_consen 2 SVAKEIDGLEEKLAQCRRRL------EAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRKENR 67 (85)
T ss_pred cHHHHHhhHHHHHHHHHHHH------HHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhh
Confidence 35678999999999999833 4578999986544 466778899999999999999988886554
No 350
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=20.59 E-value=3.5e+02 Score=25.12 Aligned_cols=44 Identities=25% Similarity=0.181 Sum_probs=33.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhc
Q 006822 531 EVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYS 574 (630)
Q Consensus 531 eae~Rak~aE~lV~KL~~ErdrLedQl~s~keenK~L~ekld~t 574 (630)
++=.+-.-++..+.+|..++..|..++..+.++|..|.-+.++.
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~L 48 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHL 48 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666777788888888888888888888887776665544
No 351
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=20.55 E-value=4.4e+02 Score=20.89 Aligned_cols=55 Identities=16% Similarity=0.309 Sum_probs=38.4
Q ss_pred HHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhh
Q 006822 351 KESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDT 405 (630)
Q Consensus 351 des~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseT 405 (630)
+.....+...+.-.-..-.+|..-+..|..+...+.+|..++..+..++..+.+.
T Consensus 7 ~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~ 61 (63)
T PF05739_consen 7 DELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKY 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333333344456777778889999999999999999999888877654
No 352
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=20.55 E-value=5e+02 Score=21.60 Aligned_cols=27 Identities=22% Similarity=0.497 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006822 333 NSEVLTMKEKVKSLEEQLKESEIRLQN 359 (630)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~ 359 (630)
+.|..-|++++..++.++..+...|.+
T Consensus 3 ~~E~~rL~Kel~kl~~~i~~~~~kL~n 29 (66)
T PF10458_consen 3 EAEIERLEKELEKLEKEIERLEKKLSN 29 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 356777888888888888888877654
No 353
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=20.51 E-value=1.2e+03 Score=25.93 Aligned_cols=20 Identities=15% Similarity=0.037 Sum_probs=12.8
Q ss_pred hHHHHHHHHHhhcCCccccccC
Q 006822 62 NLHVLLMYLLARGDDLETLVME 83 (630)
Q Consensus 62 NL~~l~M~~~~~~~~~E~~~~~ 83 (630)
.|.-.+|..+. .+|+++--.
T Consensus 47 ~L~~WL~~~~g--~~f~~p~e~ 66 (359)
T PF10498_consen 47 SLCAWLISKAG--RKFEQPQEY 66 (359)
T ss_pred HHHHHHHHhcC--CCCCCCccc
Confidence 46667777665 788865443
No 354
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=20.46 E-value=9.1e+02 Score=24.55 Aligned_cols=57 Identities=18% Similarity=0.230 Sum_probs=42.2
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006822 499 ELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYS 559 (630)
Q Consensus 499 ELeEEL~~l~~~lksLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQl~s 559 (630)
.|.-|+..+...+.-|+..+.-++.+-+=| ..|-.+...-+..+...+..|+..|..
T Consensus 154 ~l~ae~~~l~~~~~~le~el~s~~~rq~L~----~~qrdl~~~~~~~l~~~l~~Lq~~ln~ 210 (240)
T PF12795_consen 154 LLQAELAALEAQIEMLEQELLSNNNRQELL----QLQRDLLKARIQRLQQQLQALQNLLNQ 210 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCcHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888888888888777776665 345566666677777777777777665
Done!