Query 006822
Match_columns 630
No_of_seqs 97 out of 106
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 09:53:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006822.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006822hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2b9c_A Striated-muscle alpha t 99.9 4.9E-25 1.7E-29 205.4 9.4 138 374-532 1-138 (147)
2 2efr_A General control protein 99.9 7.6E-21 2.6E-25 178.9 16.5 122 426-575 1-132 (155)
3 1c1g_A Tropomyosin; contractIl 98.9 3.3E-05 1.1E-09 71.2 34.7 80 337-416 51-130 (284)
4 1c1g_A Tropomyosin; contractIl 98.7 0.00016 5.6E-09 66.6 33.2 77 338-414 87-163 (284)
5 2z5i_A TM, general control pro 98.6 8.5E-08 2.9E-12 75.9 6.1 47 531-577 2-48 (52)
6 2efr_A General control protein 98.4 8.9E-06 3E-10 76.9 15.2 143 342-519 1-143 (155)
7 1i84_S Smooth muscle myosin he 98.3 5.6E-07 1.9E-11 105.4 8.1 8 112-119 666-673 (1184)
8 3u1c_A Tropomyosin alpha-1 cha 98.3 5.7E-06 1.9E-10 72.7 10.6 52 333-384 43-101 (101)
9 1i84_S Smooth muscle myosin he 98.2 8.6E-07 2.9E-11 103.9 6.3 15 243-257 882-896 (1184)
10 1ic2_A Tropomyosin alpha chain 98.1 1.5E-05 5.3E-10 67.2 9.5 70 338-407 3-79 (81)
11 3u59_A Tropomyosin beta chain; 98.0 1.9E-05 6.4E-10 69.1 8.9 52 333-384 43-101 (101)
12 2b9c_A Striated-muscle alpha t 97.6 0.0018 6.1E-08 60.6 15.3 141 286-437 1-141 (147)
13 3u1c_A Tropomyosin alpha-1 cha 97.4 0.0014 4.6E-08 57.6 11.6 81 338-418 6-93 (101)
14 3vkg_A Dynein heavy chain, cyt 97.3 0.036 1.2E-06 71.7 26.1 180 357-570 1922-2106(3245)
15 3u59_A Tropomyosin beta chain; 97.0 0.0072 2.5E-07 52.8 11.3 81 339-419 7-94 (101)
16 3mud_A DNA repair protein XRCC 96.7 0.00084 2.9E-08 64.7 3.6 47 529-575 116-169 (175)
17 3na7_A HP0958; flagellar bioge 96.6 0.18 6E-06 49.9 19.1 144 288-438 11-163 (256)
18 1ic2_A Tropomyosin alpha chain 96.1 0.021 7E-07 48.1 8.1 71 286-367 4-74 (81)
19 3na7_A HP0958; flagellar bioge 95.9 0.49 1.7E-05 46.8 18.3 56 338-400 29-84 (256)
20 2v71_A Nuclear distribution pr 95.7 0.6 2E-05 45.5 17.7 75 485-567 106-180 (189)
21 3vkg_A Dynein heavy chain, cyt 95.7 0.49 1.7E-05 61.6 21.6 188 308-514 1909-2103(3245)
22 3o0z_A RHO-associated protein 95.3 1.2 4.2E-05 42.7 17.9 60 423-482 4-63 (168)
23 2v71_A Nuclear distribution pr 93.2 5.7 0.0002 38.7 17.7 55 338-392 21-79 (189)
24 2fxo_A Myosin heavy chain, car 92.6 2.3 7.9E-05 38.4 13.3 107 461-567 14-123 (129)
25 2dfs_A Myosin-5A; myosin-V, in 91.7 3.8 0.00013 48.6 17.1 67 365-441 973-1039(1080)
26 3o0z_A RHO-associated protein 91.5 5.4 0.00018 38.4 15.0 113 297-416 18-137 (168)
27 2fxo_A Myosin heavy chain, car 91.4 3.5 0.00012 37.2 13.1 78 334-411 34-111 (129)
28 3mtu_E Head morphogenesis prot 90.9 0.19 6.6E-06 42.9 3.9 30 546-575 42-71 (77)
29 3oja_B Anopheles plasmodium-re 89.9 2.3 7.8E-05 45.3 12.2 103 334-443 456-562 (597)
30 2dfs_A Myosin-5A; myosin-V, in 88.4 6.2 0.00021 46.8 15.4 55 52-109 453-513 (1080)
31 3oja_B Anopheles plasmodium-re 88.0 16 0.00055 38.9 17.0 72 499-570 506-580 (597)
32 3bas_A Myosin heavy chain, str 80.4 12 0.00042 31.9 9.7 28 392-419 58-85 (89)
33 2ocy_A RAB guanine nucleotide 77.5 43 0.0015 31.7 13.3 35 370-404 59-93 (154)
34 3hnw_A Uncharacterized protein 73.8 11 0.00039 34.6 8.2 50 368-417 81-130 (138)
35 3i00_A HIP-I, huntingtin-inter 71.4 9.7 0.00033 34.6 7.0 101 298-401 6-110 (120)
36 2k48_A Nucleoprotein; viral pr 71.2 17 0.00059 32.7 8.4 57 333-389 34-102 (107)
37 3tnu_B Keratin, type II cytosk 70.6 21 0.00072 32.0 9.0 20 367-386 34-53 (129)
38 1gd2_E Transcription factor PA 70.4 7.8 0.00027 32.3 5.7 48 519-566 21-68 (70)
39 3mq9_A Bone marrow stromal ant 68.7 26 0.00089 36.5 10.6 71 376-449 397-467 (471)
40 2zqm_A Prefoldin beta subunit 68.7 50 0.0017 28.1 10.7 39 529-567 72-110 (117)
41 2e7s_A RAB guanine nucleotide 68.7 11 0.00036 35.2 6.7 19 385-403 62-80 (135)
42 2ic6_A Nucleocapsid protein; h 65.3 28 0.00095 29.8 8.1 55 334-388 5-71 (78)
43 3tnu_A Keratin, type I cytoske 64.4 27 0.00091 31.4 8.4 18 368-385 37-54 (131)
44 3hnw_A Uncharacterized protein 63.0 36 0.0012 31.3 9.1 54 338-391 79-132 (138)
45 2k48_A Nucleoprotein; viral pr 61.8 8.2 0.00028 34.7 4.4 74 279-353 26-101 (107)
46 2ic9_A Nucleocapsid protein; h 60.3 33 0.0011 30.4 7.9 57 334-390 5-73 (96)
47 2v4h_A NF-kappa-B essential mo 58.9 80 0.0028 28.6 10.3 82 468-564 25-106 (110)
48 3mq9_A Bone marrow stromal ant 57.4 1.7E+02 0.006 30.2 14.3 71 426-513 398-468 (471)
49 2ic6_A Nucleocapsid protein; h 57.3 13 0.00044 31.9 4.6 65 378-446 7-73 (78)
50 1fxk_A Prefoldin; archaeal pro 56.2 89 0.0031 26.2 10.4 36 529-564 67-102 (107)
51 2i1j_A Moesin; FERM, coiled-co 54.1 31 0.0011 38.1 8.3 30 461-490 427-456 (575)
52 3azd_A Short alpha-tropomyosin 53.6 5.1 0.00017 29.6 1.4 31 334-364 4-34 (37)
53 3tnu_A Keratin, type I cytoske 53.6 1.2E+02 0.0041 27.1 10.8 73 333-405 37-113 (131)
54 2jee_A YIIU; FTSZ, septum, coi 53.4 50 0.0017 28.4 7.7 59 459-517 19-77 (81)
55 4fi5_A Nucleoprotein; structur 52.7 54 0.0018 29.8 8.1 56 335-390 23-90 (113)
56 3tnu_B Keratin, type II cytosk 52.3 1.3E+02 0.0044 26.8 12.0 73 333-405 35-111 (129)
57 4fi5_A Nucleoprotein; structur 51.9 16 0.00054 33.2 4.6 66 378-447 24-91 (113)
58 3a7o_A Autophagy protein 16; c 51.2 74 0.0025 27.0 8.2 32 546-577 44-75 (75)
59 2ic9_A Nucleocapsid protein; h 51.0 18 0.0006 32.1 4.6 66 377-446 6-73 (96)
60 2i1j_A Moesin; FERM, coiled-co 50.0 17 0.0006 40.1 5.6 16 378-393 365-380 (575)
61 1jcd_A Major outer membrane li 45.7 69 0.0023 25.4 6.8 27 368-394 24-50 (52)
62 3mq7_A Bone marrow stromal ant 45.4 1.8E+02 0.0063 26.6 11.1 23 339-361 23-45 (121)
63 2v4h_A NF-kappa-B essential mo 44.1 1.8E+02 0.0063 26.3 10.3 52 305-357 27-78 (110)
64 4ev6_A Magnesium transport pro 43.1 2.4E+02 0.0082 28.4 12.3 60 99-180 156-215 (339)
65 3efg_A Protein SLYX homolog; x 41.8 56 0.0019 27.5 6.2 48 528-575 15-62 (78)
66 2v66_B Nuclear distribution pr 41.0 2E+02 0.0069 25.9 12.8 102 300-401 1-102 (111)
67 3mov_A Lamin-B1; LMNB1, B-type 40.3 70 0.0024 27.8 6.7 64 329-402 7-70 (95)
68 3jsv_C NF-kappa-B essential mo 40.1 1.8E+02 0.0062 25.7 9.3 88 469-571 4-91 (94)
69 3bas_A Myosin heavy chain, str 39.8 1.7E+02 0.0059 24.7 10.4 30 462-491 16-45 (89)
70 4emc_A Monopolin complex subun 38.9 45 0.0015 32.7 5.8 45 314-358 11-65 (190)
71 1sjj_A Actinin; 3-helix bundle 38.4 4.6E+02 0.016 29.3 26.6 265 108-397 306-599 (863)
72 3mq7_A Bone marrow stromal ant 38.1 94 0.0032 28.5 7.4 72 374-448 23-94 (121)
73 1v9d_A Diaphanous protein homo 37.8 1.9E+02 0.0065 29.4 10.7 108 59-182 176-283 (340)
74 3s4r_A Vimentin; alpha-helix, 37.3 1.6E+02 0.0054 25.3 8.4 28 391-418 17-44 (93)
75 3htk_A Structural maintenance 37.1 1.4E+02 0.0048 22.9 8.2 50 336-385 7-56 (60)
76 1t2k_D Cyclic-AMP-dependent tr 36.6 1.3E+02 0.0046 23.5 7.4 44 519-562 14-57 (61)
77 4gkw_A Spindle assembly abnorm 36.1 2.8E+02 0.0096 26.1 15.6 58 331-388 8-65 (167)
78 1go4_E MAD1 (mitotic arrest de 36.0 1.5E+02 0.0051 26.3 8.2 21 540-560 74-94 (100)
79 1m1j_B Fibrinogen beta chain; 35.2 3.7E+02 0.013 29.4 12.8 29 377-405 101-129 (464)
80 3qh9_A Liprin-beta-2; coiled-c 34.8 1.4E+02 0.0049 25.7 7.6 33 334-366 26-58 (81)
81 2lw1_A ABC transporter ATP-bin 34.5 1.2E+02 0.0042 25.4 7.3 58 335-393 23-80 (89)
82 4emc_A Monopolin complex subun 33.7 1.1E+02 0.0038 30.0 7.6 46 478-523 10-55 (190)
83 3jsv_C NF-kappa-B essential mo 33.5 1.4E+02 0.0047 26.4 7.5 78 305-383 5-89 (94)
84 3t98_B Nucleoporin NUP58/NUP45 33.1 1.7E+02 0.0058 25.4 8.0 69 499-567 16-84 (93)
85 3cve_A Homer protein homolog 1 31.3 1.9E+02 0.0066 24.2 7.7 35 325-360 6-40 (72)
86 3etw_A Adhesin A; antiparallel 31.3 2.7E+02 0.0091 25.4 9.3 71 506-576 6-85 (119)
87 2ocy_A RAB guanine nucleotide 31.1 3.4E+02 0.012 25.6 16.4 19 341-359 13-31 (154)
88 3azd_A Short alpha-tropomyosin 30.0 16 0.00054 27.0 0.9 31 369-399 4-34 (37)
89 3i00_A HIP-I, huntingtin-inter 29.4 2E+02 0.0069 26.0 8.2 19 473-491 91-109 (120)
90 4abm_A Charged multivesicular 29.2 2.5E+02 0.0087 23.5 9.9 33 528-560 46-78 (79)
91 3swy_A Cyclic nucleotide-gated 28.3 1.7E+02 0.0058 22.7 6.4 44 338-384 2-45 (46)
92 2oqq_A Transcription factor HY 28.3 1.5E+02 0.0051 22.8 5.9 39 527-572 3-41 (42)
93 1lwu_C Fibrinogen gamma chain; 28.2 1E+02 0.0035 32.1 6.8 50 340-389 4-53 (323)
94 2e7s_A RAB guanine nucleotide 27.7 67 0.0023 29.9 4.8 22 378-399 48-69 (135)
95 1deq_A Fibrinogen (alpha chain 27.6 5.6E+02 0.019 27.6 12.3 126 373-515 64-189 (390)
96 1ux5_A BNI1 protein; structura 26.4 2E+02 0.0069 29.9 8.8 106 63-182 261-368 (411)
97 1t2k_D Cyclic-AMP-dependent tr 26.2 70 0.0024 25.2 4.1 35 483-517 24-58 (61)
98 1l8d_A DNA double-strand break 26.0 3E+02 0.01 23.3 10.9 22 499-520 21-42 (112)
99 3ghg_A Fibrinogen alpha chain; 25.1 4.8E+02 0.016 29.3 11.6 28 534-561 131-158 (562)
100 1jnm_A Proto-oncogene C-JUN; B 24.7 1.9E+02 0.0066 22.7 6.4 44 518-561 13-56 (62)
101 3ghg_A Fibrinogen alpha chain; 24.6 4.4E+02 0.015 29.6 11.1 21 224-244 56-76 (562)
102 1dh3_A Transcription factor CR 24.4 1.7E+02 0.0058 22.9 5.9 40 518-564 13-52 (55)
103 2jee_A YIIU; FTSZ, septum, coi 24.4 3.4E+02 0.012 23.3 10.0 62 337-398 16-77 (81)
104 1x79_B RAB GTPase binding effe 23.7 4.1E+02 0.014 24.0 10.0 72 493-571 36-107 (112)
105 1wt6_A Myotonin-protein kinase 23.6 2.2E+02 0.0075 24.5 6.8 34 475-515 39-72 (81)
106 1gl2_D Syntaxin 8, vesicle tra 23.2 2.4E+02 0.0083 22.1 6.7 54 349-402 10-63 (65)
107 2akf_A Coronin-1A; coiled coil 23.1 69 0.0023 23.1 3.0 18 541-558 13-30 (32)
108 3nmd_A CGMP dependent protein 22.5 2.6E+02 0.0087 23.6 6.9 43 345-387 23-65 (72)
109 4dnd_A Syntaxin-10, SYN10; str 22.2 4.4E+02 0.015 23.8 9.1 63 407-480 63-125 (130)
110 4etp_A Kinesin-like protein KA 22.0 1.3E+02 0.0044 31.8 6.3 19 600-618 236-254 (403)
111 1t6f_A Geminin; coiled-coil, c 21.5 86 0.003 23.4 3.4 26 544-569 10-35 (37)
112 2zqm_A Prefoldin beta subunit 21.5 3.7E+02 0.012 22.6 9.4 22 337-358 73-94 (117)
113 3cvf_A Homer-3, homer protein 21.4 2.6E+02 0.0088 23.8 6.8 61 320-381 7-74 (79)
114 2j1d_G DAAM1, disheveled-assoc 20.5 2.3E+02 0.008 30.3 8.0 110 58-182 257-366 (483)
115 2eqb_B RAB guanine nucleotide 20.3 4.5E+02 0.015 23.2 11.6 16 467-482 26-41 (97)
116 4h22_A Leucine-rich repeat fli 20.2 3E+02 0.01 24.7 7.2 46 373-418 27-72 (103)
No 1
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=99.91 E-value=4.9e-25 Score=205.38 Aligned_cols=138 Identities=22% Similarity=0.321 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhHhhhHhHHH
Q 006822 374 MDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQE 453 (630)
Q Consensus 374 LerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~e 453 (630)
|+|+|++|++++.+|++|+.+|..||..++++++++.|.+++|++|+..+++|++.||.||++++ .+|+++++
T Consensus 1 l~Rri~llEeeLer~eerl~~a~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak-------~~aeeadr 73 (147)
T 2b9c_A 1 MNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAK-------HIAEDADR 73 (147)
T ss_dssp ----------CCGGGGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHH-------HHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999998 99999999
Q ss_pred HHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHH
Q 006822 454 QQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEV 532 (630)
Q Consensus 454 qQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~ke~tlKea 532 (630)
+|++++|+++|++ ++|.||+.|++.+|+||. +|+++|+.++++|||||++..+|+++++.|-..|
T Consensus 74 ----KyeE~~RKl~~~E---~dLeraeeRae~aE~k~~-------eLEeeL~~~~~nlKsLE~~eekas~rE~~yee~I 138 (147)
T 2b9c_A 74 ----KYEEVARKLVIIE---SDLERAEERAELSEGKCA-------ELEEELKTVTNNLKSLEDKVEELLSKNYHLENEV 138 (147)
T ss_dssp ----HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred ----hHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHH
Confidence 9999999999999 999999999999999999 9999999999999999999999999999996554
No 2
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=99.86 E-value=7.6e-21 Score=178.89 Aligned_cols=122 Identities=17% Similarity=0.281 Sum_probs=117.6
Q ss_pred hhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHH
Q 006822 426 KVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQS 505 (630)
Q Consensus 426 K~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~ 505 (630)
||+.||.|||++ ++++++ +|++++| +| ++|+|||+|++.+|+||. +|+++|+
T Consensus 1 r~~~lE~qlkea----------ae~ad~----KyeEvaR----~E---~dLEraEERae~aE~k~~-------eLEeeL~ 52 (155)
T 2efr_A 1 RMKQLEDKVEEL----------LSKNYH----LENEVAR----LK---KLLERAEERAELSEGKSA-------ELEEELK 52 (155)
T ss_dssp CHHHHHHHHHHH----------HHHHHH----HHHHHHH----HH---HHHHHHHHHHHHHHHHHH-------HHHHHHH
T ss_pred CHHHHHHHHHHH----------HHHhHH----HHHHHHH----HH---HHHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence 588999999985 689999 9999999 77 999999999999999999 9999999
Q ss_pred HHHhhHHHHHHHHHHHhHHHHhh----------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC
Q 006822 506 FMRDKIKILESSLNRANIEKAAS----------AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (630)
Q Consensus 506 ~l~~~lksLE~sl~kA~q~ke~t----------lKeae~Rak~aE~lV~KL~~ErdrLedQl~s~keenK~L~ekld~tk 575 (630)
.+++++||||++..+|+++++.| +|++++|++|++|.|++|++++|+|++.|.+.+.+|+.+.++||+|=
T Consensus 53 ~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl 132 (155)
T 2efr_A 53 TVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLE 132 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999874
No 3
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.87 E-value=3.3e-05 Score=71.22 Aligned_cols=80 Identities=16% Similarity=0.255 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhh
Q 006822 337 LTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFL 416 (630)
Q Consensus 337 ~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~L 416 (630)
..+...+..+...+.....++..+...+...+.++..+..++..+...+.+.+.++.....++..+...-.++...+..+
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 130 (284)
T 1c1g_A 51 KATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVI 130 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444445555555555555555555555555555555555554444444444444
No 4
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.70 E-value=0.00016 Score=66.58 Aligned_cols=77 Identities=13% Similarity=0.242 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhh
Q 006822 338 TMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEIN 414 (630)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk 414 (630)
.+..++..++.++.....++......+......+..+...+..+...+...+.....+..++..+......+...+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 163 (284)
T 1c1g_A 87 SLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYE 163 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433333444444444444444444444444444444444433333333333
No 5
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=98.56 E-value=8.5e-08 Score=75.88 Aligned_cols=47 Identities=15% Similarity=0.193 Sum_probs=43.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCC
Q 006822 531 EVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSGKS 577 (630)
Q Consensus 531 eae~Rak~aE~lV~KL~~ErdrLedQl~s~keenK~L~ekld~tkk~ 577 (630)
++-+||+||||+|+||+++||||++.+++.|++|+.+.+++|+|=.+
T Consensus 2 ~~~~~aefAERsV~KLek~ID~LEdeL~~eKek~~~i~~eLD~tl~e 48 (52)
T 2z5i_A 2 ELLSKNYHLENEVARLKKLVDDLEDELYAQKLKYKAISEELDHALND 48 (52)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999998544
No 6
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=98.35 E-value=8.9e-06 Score=76.91 Aligned_cols=143 Identities=21% Similarity=0.287 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCC
Q 006822 342 KVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNND 421 (630)
Q Consensus 342 KvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~ 421 (630)
++.+||.||+++ ...|.-+. .+++. ++.++.|||+|+..|++||..|...-.-....+|.|+.+..
T Consensus 1 r~~~lE~qlkea---ae~ad~Ky----eEvaR-------~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~see 66 (155)
T 2efr_A 1 RMKQLEDKVEEL---LSKNYHLE----NEVAR-------LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAE 66 (155)
T ss_dssp CHHHHHHHHHHH---HHHHHHHH----HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH---HHHhHHHH----HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhh
Confidence 356788888877 33333333 24444 99999999999999999999999988888899999998877
Q ss_pred CchhhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHH
Q 006822 422 SNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELK 501 (630)
Q Consensus 422 ~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELe 501 (630)
..++|.+..|.||+.+..+|..|..-|+.+.+ .|..++.-|. +.|.++.....|.. .+.
T Consensus 67 kasqrEd~yEeqIk~L~~kLKEAE~RAE~AER-------sv~kLEk~id-------~lEd~L~~~Kek~~-------~i~ 125 (155)
T 2efr_A 67 KYSQKEDKYEEEIKVLSDKLKEAETRAEFAER-------SVTKLEKSID-------DLEDELYAQKLKYK-------AIS 125 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH-------HHHHHHHHHHHHHH-------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH-------HHHHHHHHHHHHHH-------HHH
Confidence 77888888888888888777777766666655 2334444444 34444444444455 666
Q ss_pred HHHHHHHhhHHHHHHHHH
Q 006822 502 NKQSFMRDKIKILESSLN 519 (630)
Q Consensus 502 EEL~~l~~~lksLE~sl~ 519 (630)
++|...-+.|.++.+.+.
T Consensus 126 ~eLd~tl~el~~~~~~~~ 143 (155)
T 2efr_A 126 EEMKQLEDKVEELLSKNY 143 (155)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccchH
Confidence 666665555555544443
No 7
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.34 E-value=5.6e-07 Score=105.44 Aligned_cols=8 Identities=25% Similarity=0.688 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 006822 112 VERLLDTI 119 (630)
Q Consensus 112 le~~~~~l 119 (630)
|..+|++|
T Consensus 666 l~~L~~~l 673 (1184)
T 1i84_S 666 LTKLMTTL 673 (1184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444443
No 8
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=98.25 E-value=5.7e-06 Score=72.71 Aligned_cols=52 Identities=8% Similarity=0.279 Sum_probs=48.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh-------HHHHHhHHHHHHHHHHH
Q 006822 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS-------QEQLNEMDNFIESLKES 384 (630)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEes-------E~EVaaLerrIelLKEe 384 (630)
+.|+.+|++|++.+|++|+.++.+|..|+.+++.. +++|++|+|||++|+++
T Consensus 43 E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~RriqllEEe 101 (101)
T 3u1c_A 43 EDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLVEEE 101 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 78999999999999999999999999999999875 67999999999999874
No 9
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.22 E-value=8.6e-07 Score=103.91 Aligned_cols=15 Identities=13% Similarity=-0.057 Sum_probs=5.5
Q ss_pred HHHhhhhhhhHHHHH
Q 006822 243 QLKLKLHHTEQVAFR 257 (630)
Q Consensus 243 eLk~kL~~~eqe~~~ 257 (630)
+++.++...++++..
T Consensus 882 ele~~l~~Le~e~~~ 896 (1184)
T 1i84_S 882 ELEQKHTQLCEEKNL 896 (1184)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 10
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=98.08 E-value=1.5e-05 Score=67.21 Aligned_cols=70 Identities=16% Similarity=0.203 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhh-------HHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhH
Q 006822 338 TMKEKVKSLEEQLKESEIRLQNANACFQTS-------QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNL 407 (630)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~aklEes-------E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNd 407 (630)
.+.+|+..+..+.+.+..++..+...+... +++|.+|+++|+.|+++++++++|+..|..||...+++++
T Consensus 3 ~ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek~~~ 79 (81)
T 1ic2_A 3 AIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADKKAT 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 578999999999999999999888888664 7799999999999999999999999999999999998765
No 11
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=98.01 E-value=1.9e-05 Score=69.11 Aligned_cols=52 Identities=13% Similarity=0.308 Sum_probs=47.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh-------HHHHHhHHHHHHHHHHH
Q 006822 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS-------QEQLNEMDNFIESLKES 384 (630)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEes-------E~EVaaLerrIelLKEe 384 (630)
+.++.+|++|++.+|++++.++.+|..++.+++.. +++|++|+|||++|+++
T Consensus 43 E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqllEEe 101 (101)
T 3u59_A 43 EEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLVEEE 101 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 68999999999999999999999999999888774 77999999999999874
No 12
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=97.59 E-value=0.0018 Score=60.56 Aligned_cols=141 Identities=24% Similarity=0.261 Sum_probs=97.3
Q ss_pred HHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q 006822 286 MLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQ 365 (630)
Q Consensus 286 l~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklE 365 (630)
|.-|++.++-+|.-+.-|=.....||..+.......+....-|+.. -..--+|+..||.+|++.......|
T Consensus 1 l~Rri~llEeeLer~eerl~~a~~kLeeaek~adE~eR~~k~lE~r----~~~deEr~~~lE~qLkeak~~aeea----- 71 (147)
T 2b9c_A 1 MNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESR----AQKDEEKMEIQEIQLKEAKHIAEDA----- 71 (147)
T ss_dssp ----------CCGGGGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hcccHHHHHHHHHHHHHHHHHHHHH-----
Confidence 3467888888888888877777778877776666555555555443 1122346666666666655555444
Q ss_pred hhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHH
Q 006822 366 TSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDL 437 (630)
Q Consensus 366 esE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa 437 (630)
........|++..++.++.+|+.|+..++++|..|...-.-....++.|+-.......|-+..|.+++..
T Consensus 72 --drKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~eekas~rE~~yee~I~~L 141 (147)
T 2b9c_A 72 --DRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEELLSKNYHLENEVARL 141 (147)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTS
T ss_pred --HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHH
Confidence 4445578899999999999999999999999999999998888899999888776677777777777654
No 13
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=97.43 E-value=0.0014 Score=57.63 Aligned_cols=81 Identities=12% Similarity=0.158 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhh-------hhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHH
Q 006822 338 TMKEKVKSLEEQLKESEIRLQNANACF-------QTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELS 410 (630)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~akl-------EesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELe 410 (630)
...+|++.|-.+.+.+......+..++ ...+.+|++|+++|+.++.+++++++++..|..++....+...+.+
T Consensus 6 aIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE 85 (101)
T 3u1c_A 6 AIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAE 85 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677776666666666555544444 3358899999999999999999999999999999999999999988
Q ss_pred HHhhhhhc
Q 006822 411 EEINFLKG 418 (630)
Q Consensus 411 relk~Les 418 (630)
.+...|--
T Consensus 86 ~ev~~L~R 93 (101)
T 3u1c_A 86 SEVASLNR 93 (101)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887754
No 14
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.26 E-value=0.036 Score=71.67 Aligned_cols=180 Identities=12% Similarity=0.135 Sum_probs=120.6
Q ss_pred HHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHH
Q 006822 357 LQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRD 436 (630)
Q Consensus 357 L~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKE 436 (630)
+..--.|+.++.++|+.|+..+..++-.+..+...++....+...-+..+++-+.... ..+.++.+
T Consensus 1922 l~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~--------------~~~~~~~~ 1987 (3245)
T 3vkg_A 1922 LNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDAR--------------ELQVQLDV 1987 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHH
Confidence 4445556777788888888888888888887776666655555544443333222211 11111111
Q ss_pred HHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHH--HHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHH
Q 006822 437 LEIQLQQAKVSSEASQEQQSMLYSAIWDMETLI--EDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKIL 514 (630)
Q Consensus 437 a~~QLqhA~asaEas~eqQ~mkysei~dme~vI--EdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksL 514 (630)
|...+.+...+.++ ++..+. +=++.++..||.+++.++.+.. +...+|+.+..++..|
T Consensus 1988 ---~~~ei~~~k~~~e~----------dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~-------~~~~~L~~le~~l~~L 2047 (3245)
T 3vkg_A 1988 ---RNKEIAVQKVKAYA----------DLEKAEPTGPLREEVEQLENAANELKLKQD-------EIVATITALEKSIATY 2047 (3245)
T ss_dssp ---HHHHHHHHHHHHHH----------CC-------CHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHH----------HHhhcCCCChHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 11111111111111 111111 5667788888888888888888 8899999999999999
Q ss_pred HHHHHHHhHHHHhh---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 006822 515 ESSLNRANIEKAAS---AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEK 570 (630)
Q Consensus 515 E~sl~kA~q~ke~t---lKeae~Rak~aE~lV~KL~~ErdrLedQl~s~keenK~L~ek 570 (630)
+...+++..++..- ++....|-.-|++++..|..|+.|=..++..++..++.|...
T Consensus 2048 ~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L~GD 2106 (3245)
T 3vkg_A 2048 KEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTVVGD 2106 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhccHH
Confidence 99999998888876 666777889999999999999999999999988877776554
No 15
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=96.96 E-value=0.0072 Score=52.76 Aligned_cols=81 Identities=16% Similarity=0.209 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhh-------hhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHH
Q 006822 339 MKEKVKSLEEQLKESEIRLQNANAC-------FQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSE 411 (630)
Q Consensus 339 LqkKvksLE~qLdes~eQL~~A~ak-------lEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELer 411 (630)
..+|++.|-.+.+.+......+... ....+.+|.++.++|+.++.++++++.++..+..++....+...+.+.
T Consensus 7 iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~ 86 (101)
T 3u59_A 7 IKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEA 86 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455655555555555544444333 344588999999999999999999999999999999999999999999
Q ss_pred HhhhhhcC
Q 006822 412 EINFLKGN 419 (630)
Q Consensus 412 elk~Lesr 419 (630)
++..|--|
T Consensus 87 evasLnRr 94 (101)
T 3u59_A 87 EVASLNRR 94 (101)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98887653
No 16
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=96.71 E-value=0.00084 Score=64.70 Aligned_cols=47 Identities=11% Similarity=0.123 Sum_probs=44.8
Q ss_pred HHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC
Q 006822 529 AKEVNHRTK-------LMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (630)
Q Consensus 529 lKeae~Rak-------~aE~lV~KL~~ErdrLedQl~s~keenK~L~ekld~tk 575 (630)
+|.+..|++ ++++.|++|++++|+|++.+..+|++|+.+.++||+|=
T Consensus 116 Lk~a~~paE~ireli~~AertV~kLqkeiD~LEDeL~~eKek~k~i~~eLDqTl 169 (175)
T 3mud_A 116 LEKVENPAEVIRELICYCLDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLDQTL 169 (175)
T ss_dssp CEECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999 99999999999999999999999999999999999884
No 17
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.56 E-value=0.18 Score=49.94 Aligned_cols=144 Identities=14% Similarity=0.130 Sum_probs=87.7
Q ss_pred hhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh-
Q 006822 288 GRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQT- 366 (630)
Q Consensus 288 gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEe- 366 (630)
-.||.+-..+.....+=..+...+......+......+..+. .++..+...++.+|.+++....++...+..+..
T Consensus 11 ~~LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~----~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v 86 (256)
T 3na7_A 11 IEISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLE----EEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEI 86 (256)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 345666666665555555566666666666555555555443 345555555555665555555555544444432
Q ss_pred --------hHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHH
Q 006822 367 --------SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLE 438 (630)
Q Consensus 367 --------sE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~ 438 (630)
...+|..+.++|..+++++.....+.+.....+..+...-.++...+..++.. -+..+..++.++....
T Consensus 87 ~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~---~~~~~~e~~~e~~~l~ 163 (256)
T 3na7_A 87 KSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESL---VENEVKNIKETQQIIF 163 (256)
T ss_dssp SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 25577777888888888888888888777777777777777777766666554 2344455555555443
No 18
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=96.09 E-value=0.021 Score=48.12 Aligned_cols=71 Identities=15% Similarity=0.305 Sum_probs=49.4
Q ss_pred HHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q 006822 286 MLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQ 365 (630)
Q Consensus 286 l~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklE 365 (630)
+..|++.++.+.-.+.-|=..+..+|+.+. ....++ ++|+.+|++|++.||.+|+.++++|..|..+|+
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e-------~~~~~~----E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLe 72 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEADKKAAE-------ERSKQL----EDELVALQKKLKGTEDELDKYSESLKDAQEKLE 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666665544444444444444433 222222 688999999999999999999999999999988
Q ss_pred hh
Q 006822 366 TS 367 (630)
Q Consensus 366 es 367 (630)
..
T Consensus 73 ea 74 (81)
T 1ic2_A 73 LA 74 (81)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 19
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.90 E-value=0.49 Score=46.77 Aligned_cols=56 Identities=7% Similarity=0.132 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 006822 338 TMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVT 400 (630)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle 400 (630)
.|...+..++.++.....++..++. ++.++++.|..++.++.....|......++.
T Consensus 29 ~lp~el~~le~~~~~l~~~~~~~~~-------~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~ 84 (256)
T 3na7_A 29 EKRKDLDKALNDKEAKNKAILNLEE-------EKLALKLQVSKNEQTLQDTNAKIASIQKKMS 84 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555554444444 4445555555555555555555555555553
No 20
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=95.73 E-value=0.6 Score=45.53 Aligned_cols=75 Identities=16% Similarity=0.119 Sum_probs=39.2
Q ss_pred hhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006822 485 SVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSEN 564 (630)
Q Consensus 485 ~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQl~s~keen 564 (630)
..-.+|.-|=-.|-+|+-..+...+.+.++|..+++|-++..=-=-|+. + -..|..+++||.+++.-++.+.
T Consensus 106 ~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~------E--Ke~l~~~~QRLkdE~rDLk~El 177 (189)
T 2v71_A 106 QLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELD------E--KESLLVSVQRLKDEARDLRQEL 177 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H--HHHHHCCC--------------
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH------H--HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555667788888888889999999999888877654433333 2 2255677778888887777776
Q ss_pred hHH
Q 006822 565 KLL 567 (630)
Q Consensus 565 K~L 567 (630)
..+
T Consensus 178 ~v~ 180 (189)
T 2v71_A 178 AVR 180 (189)
T ss_dssp ---
T ss_pred HHH
Confidence 553
No 21
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.69 E-value=0.49 Score=61.61 Aligned_cols=188 Identities=13% Similarity=0.123 Sum_probs=87.8
Q ss_pred HHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHH----HHH
Q 006822 308 KSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIES----LKE 383 (630)
Q Consensus 308 ~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIel----LKE 383 (630)
..|-+...++...-..=|+||.++ ...|..|++++...+.+|.+.......+-........++..-....+. +..
T Consensus 1909 ~~K~~el~~~~~rl~~GL~KL~et-~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~~~ 1987 (3245)
T 3vkg_A 1909 NEKRDQLEEEQLHLNIGLKKLRDT-EAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDV 1987 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555556777888887 778888888888877777766554433322222111111111111111 112
Q ss_pred HHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhHhhhHhHHH---HHhhhHH
Q 006822 384 SLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQE---QQSMLYS 460 (630)
Q Consensus 384 el~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~e---qQ~mkys 460 (630)
+...+..+...|+..+..+.=+ .--.+++..+|.+|..++.+|+.+++...+-+. +....|+
T Consensus 1988 ~~~ei~~~k~~~e~dL~~A~Pa---------------~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~ 2052 (3245)
T 3vkg_A 1988 RNKEIAVQKVKAYADLEKAEPT---------------GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYA 2052 (3245)
T ss_dssp HHHHHHHHHHHHHHCC----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcCCC---------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222233333333333332222 011244555666666666555554433333222 1111233
Q ss_pred HHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHH
Q 006822 461 AIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKIL 514 (630)
Q Consensus 461 ei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksL 514 (630)
+... =.+.|+.++...+.|.+.|+.=+.+|+..+--=.+.+..+...++.|
T Consensus 2053 ~~~~---ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L 2103 (3245)
T 3vkg_A 2053 TLIR---ETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTV 2103 (3245)
T ss_dssp HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhc
Confidence 2211 12333455556666666666666666666665555555555555544
No 22
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=95.32 E-value=1.2 Score=42.73 Aligned_cols=60 Identities=17% Similarity=0.241 Sum_probs=41.4
Q ss_pred chhhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhh
Q 006822 423 NTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESK 482 (630)
Q Consensus 423 deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~R 482 (630)
-++|+..||+||.|++..|..-.-.+.-...+|...--.++..+..+-||++++...+.-
T Consensus 4 ~neKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~ 63 (168)
T 3o0z_A 4 ANEKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENS 63 (168)
T ss_dssp ------CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999988877766666666667766667888888888888886644433
No 23
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=93.17 E-value=5.7 Score=38.71 Aligned_cols=55 Identities=11% Similarity=0.152 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhh----hHHHHHhHHHHHHHHHHHHHhhhhhH
Q 006822 338 TMKEKVKSLEEQLKESEIRLQNANACFQT----SQEQLNEMDNFIESLKESLYGAESRA 392 (630)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~aklEe----sE~EVaaLerrIelLKEel~rAEsRa 392 (630)
.+..++..++..|+++.+.-..-.+.+|. ++...+.|..++.-|+.++.....|+
T Consensus 21 ~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~ 79 (189)
T 2v71_A 21 KYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKL 79 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666554443333322 23334444444444444444443333
No 24
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=92.65 E-value=2.3 Score=38.38 Aligned_cols=107 Identities=20% Similarity=0.250 Sum_probs=72.0
Q ss_pred HHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhh---HHHHHHhHH
Q 006822 461 AIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAAS---AKEVNHRTK 537 (630)
Q Consensus 461 ei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~ke~t---lKeae~Rak 537 (630)
+++.+..=|..|+.++.+.+.+..-+|.+..-|...-..|...|..-+.++...+....+...++... ++++..|-+
T Consensus 14 E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rle 93 (129)
T 2fxo_A 14 EMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLE 93 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666777777777777777777775555555566666666666666666666655555443 777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 006822 538 LMMEMVMQLATQRELIQKQVYSLTSENKLL 567 (630)
Q Consensus 538 ~aE~lV~KL~~ErdrLedQl~s~keenK~L 567 (630)
-.++....|..+...|++++..+++...-+
T Consensus 94 eeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 94 DEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777777655443
No 25
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=91.69 E-value=3.8 Score=48.57 Aligned_cols=67 Identities=16% Similarity=0.162 Sum_probs=34.1
Q ss_pred hhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHH
Q 006822 365 QTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQL 441 (630)
Q Consensus 365 EesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QL 441 (630)
+..+.+...++..+..|++++...+...+.+....+.+.+.++++...+. +|+..|++.....+.|+
T Consensus 973 e~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~----------~kv~~L~~e~~~L~qq~ 1039 (1080)
T 2dfs_A 973 RMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETE----------QLVSELKEQNTLLKTEK 1039 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
Confidence 33344445555555555555555555555555555555555555443222 45555555555444333
No 26
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=91.55 E-value=5.4 Score=38.36 Aligned_cols=113 Identities=20% Similarity=0.201 Sum_probs=80.6
Q ss_pred cccchhchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh-------HH
Q 006822 297 LNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS-------QE 369 (630)
Q Consensus 297 L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEes-------E~ 369 (630)
+|..-+.|+|--.||+-.-..+. +--+.-+.-++.|++++..|+..-+..+-++....+.++.= ..
T Consensus 18 ~n~kLk~EsE~~~rlkK~~tEl~-------k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se 90 (168)
T 3o0z_A 18 ANDLLRTESDTAVRLRKSHTEMS-------KSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSE 90 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555544433332 22222356688899999999998888888887777777552 55
Q ss_pred HHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhh
Q 006822 370 QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFL 416 (630)
Q Consensus 370 EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~L 416 (630)
.+++|+.+|..|..++.+.-.|...+......|.+--..++.+...+
T Consensus 91 ~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~ 137 (168)
T 3o0z_A 91 MIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNL 137 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 78899999999999999999999999888888877776666654433
No 27
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=91.43 E-value=3.5 Score=37.16 Aligned_cols=78 Identities=18% Similarity=0.250 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHH
Q 006822 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSE 411 (630)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELer 411 (630)
.....|..+...|..+......||+.-...+..++.....|..+-..|+..+...++|+..-+..+..|+..-..+..
T Consensus 34 ~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~ 111 (129)
T 2fxo_A 34 ARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLED 111 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456666666777777777777766666666666666665555566666655555555544444444433333333
No 28
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=90.88 E-value=0.19 Score=42.87 Aligned_cols=30 Identities=13% Similarity=0.129 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhhcC
Q 006822 546 LATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (630)
Q Consensus 546 L~~ErdrLedQl~s~keenK~L~ekld~tk 575 (630)
.+++||+|++.|+..|++|+.+.++||+|=
T Consensus 42 ~EKTIDDLEDkL~~eKEK~k~i~eeLDqTL 71 (77)
T 3mtu_E 42 FVSEYNDLEEKVAHAKEENLNMHQMLDQTL 71 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 578999999999999999999999999884
No 29
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=89.92 E-value=2.3 Score=45.35 Aligned_cols=103 Identities=17% Similarity=0.144 Sum_probs=69.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHH----hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHH
Q 006822 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLN----EMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLEL 409 (630)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVa----aLerrIelLKEel~rAEsRa~tAesKle~LseTNdEL 409 (630)
.++..+..++..++.++...+..++....++++...... .+.+..+.+++.+.+.++|.+..+.++....+...+.
T Consensus 456 ~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (597)
T 3oja_B 456 AEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAK 535 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhh
Confidence 345556666666666666666666666665555433222 5555667777788888888888888888888888888
Q ss_pred HHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHH
Q 006822 410 SEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQ 443 (630)
Q Consensus 410 erelk~Lesrs~~deEK~~~LE~QLKEa~~QLqh 443 (630)
++++..++. ++..+|+++++.+.+++.
T Consensus 536 ~~~~~~~~~-------~~~~le~~~~~~~~~~~~ 562 (597)
T 3oja_B 536 QKETEDLEQ-------ENIALEKQLDNKRAKQAE 562 (597)
T ss_dssp HHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHh-------hhHHHHHHHhhhhhHHHH
Confidence 888776666 366777777776644433
No 30
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=88.43 E-value=6.2 Score=46.77 Aligned_cols=55 Identities=22% Similarity=0.234 Sum_probs=26.9
Q ss_pred ccccchhhh---hhHHHHHHHHHhh---cCCccccccCCCccchHHHHHHHHHHHhhhhhhhhH
Q 006822 52 DLAYSSEKL---VNLHVLLMYLLAR---GDDLETLVMENSDVAATSIEKALVYDLLFGILDSEL 109 (630)
Q Consensus 52 ~~a~~SEKl---~NL~~l~M~~~~~---~~~~E~~~~~~~~i~~~s~eka~efDlL~gildsEv 109 (630)
=+-|+-||| +|-|+|.++-..- +-++.+....|+..--+.+++. --+-.|||-|-
T Consensus 453 cINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dn~~~idlie~~---~Gil~lLdee~ 513 (1080)
T 2dfs_A 453 CINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK---MGVLDLLDEEC 513 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCCCCCCCHHHHHHHHST---TSHHHHHHHHT
T ss_pred HHHhhhHHHHHHHHHHhhHHHHHHHhhcCCccccccccccHHHHHHHhcC---Cceeeeccccc
Confidence 345778887 6667777665432 2233333333333223444544 12233566553
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=88.02 E-value=16 Score=38.86 Aligned_cols=72 Identities=8% Similarity=0.111 Sum_probs=32.4
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhHHHHhh---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 006822 499 ELKNKQSFMRDKIKILESSLNRANIEKAAS---AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEK 570 (630)
Q Consensus 499 ELeEEL~~l~~~lksLE~sl~kA~q~ke~t---lKeae~Rak~aE~lV~KL~~ErdrLedQl~s~keenK~L~ek 570 (630)
.+.+++..+..+...++..+.+..+..... .+.++....-+++-...-...+.++..++...+.+.+.+.++
T Consensus 506 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~ 580 (597)
T 3oja_B 506 NLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666555555444433333222 222223333333333333444444444444444444444333
No 32
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=80.44 E-value=12 Score=31.87 Aligned_cols=28 Identities=32% Similarity=0.393 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhhhhHHHHHHhhhhhcC
Q 006822 392 AESAEEKVTQLTDTNLELSEEINFLKGN 419 (630)
Q Consensus 392 a~tAesKle~LseTNdELerelk~Lesr 419 (630)
+..|+.+|..|.....+|+..++.|..|
T Consensus 58 l~eaEe~~~~L~~~K~eLE~~l~el~~r 85 (89)
T 3bas_A 58 MKQLEDKVEELLSKNYHLENEVARLKKL 85 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888888888888777554
No 33
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=77.50 E-value=43 Score=31.73 Aligned_cols=35 Identities=23% Similarity=0.252 Sum_probs=15.8
Q ss_pred HHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhh
Q 006822 370 QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTD 404 (630)
Q Consensus 370 EVaaLerrIelLKEel~rAEsRa~tAesKle~Lse 404 (630)
++..|...+..=...-..||.+....+..++.||.
T Consensus 59 e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTa 93 (154)
T 2ocy_A 59 EVKRLREDIAKENELRTKAEEEADKLNKEVEDLTA 93 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444445555555555555543
No 34
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=73.76 E-value=11 Score=34.64 Aligned_cols=50 Identities=24% Similarity=0.295 Sum_probs=31.7
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhh
Q 006822 368 QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLK 417 (630)
Q Consensus 368 E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Le 417 (630)
+.++..+...|.+||.++..+..++..+..+++.+.+-+.+|.+...-|+
T Consensus 81 ~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 81 SLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556666777777777777777776666666666666666555443
No 35
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=71.40 E-value=9.7 Score=34.58 Aligned_cols=101 Identities=28% Similarity=0.339 Sum_probs=49.4
Q ss_pred ccchhchhH-HHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHH
Q 006822 298 NGSLQRESE-LKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDN 376 (630)
Q Consensus 298 ~as~~REse-l~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLer 376 (630)
+|+..-+.| +..-|+.-++.|.+ .++.+....-.-+..|...|..||-+|++..-+.+.|....+....++..+.+
T Consensus 6 ~~~~~d~rD~~Ie~Lkreie~lk~---ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~ 82 (120)
T 3i00_A 6 NGVNKDEKDHLIERLYREISGLKA---QLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRR 82 (120)
T ss_dssp ----CCTHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444434444 55556666655553 44444443457888999999999999999998888887776655555555433
Q ss_pred HHHH---HHHHHHhhhhhHHHHHHHHHH
Q 006822 377 FIES---LKESLYGAESRAESAEEKVTQ 401 (630)
Q Consensus 377 rIel---LKEel~rAEsRa~tAesKle~ 401 (630)
.... +...+..+|.|++.++.+...
T Consensus 83 ~~~~~~~~q~~~~e~E~kAqa~Eerf~K 110 (120)
T 3i00_A 83 QREDTEKAQRSLSEIERKAQANEQRYSK 110 (120)
T ss_dssp TCC-------------------------
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3222 233345566666666555443
No 36
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=71.23 E-value=17 Score=32.66 Aligned_cols=57 Identities=18% Similarity=0.308 Sum_probs=47.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh------------HHHHHhHHHHHHHHHHHHHhhh
Q 006822 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS------------QEQLNEMDNFIESLKESLYGAE 389 (630)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEes------------E~EVaaLerrIelLKEel~rAE 389 (630)
-+.+..|++-+...|.||-.+.-.|.+|....|.- .+.|++++..|.+||..+..+-
T Consensus 34 M~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~v 102 (107)
T 2k48_A 34 MSTLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADLV 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999999988777652 6689999999999998886553
No 37
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=70.59 E-value=21 Score=31.98 Aligned_cols=20 Identities=20% Similarity=0.554 Sum_probs=12.0
Q ss_pred hHHHHHhHHHHHHHHHHHHH
Q 006822 367 SQEQLNEMDNFIESLKESLY 386 (630)
Q Consensus 367 sE~EVaaLerrIelLKEel~ 386 (630)
+..+|..|.|.|+.|.-++.
T Consensus 34 ~k~Ei~elrr~iq~L~~el~ 53 (129)
T 3tnu_B 34 TKHEISEMNRMIQRLRAEID 53 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666655553
No 38
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=70.44 E-value=7.8 Score=32.27 Aligned_cols=48 Identities=13% Similarity=0.187 Sum_probs=42.4
Q ss_pred HHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 006822 519 NRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKL 566 (630)
Q Consensus 519 ~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQl~s~keenK~ 566 (630)
-.+-++|..|+++++.+..-.+.....|..|.+.|..+|..+..+++.
T Consensus 21 RafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 21 RAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345789999999999999999999999999999999999998888765
No 39
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=68.75 E-value=26 Score=36.48 Aligned_cols=71 Identities=25% Similarity=0.309 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhHhhhH
Q 006822 376 NFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSE 449 (630)
Q Consensus 376 rrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaE 449 (630)
++..+|..+|.+++-....++.+-.-...|..-|-.-|..-.+++ ..|+..||+++++.+.+|+.+.+-++
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 397 NVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQG---QKKVEELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666655555566655555444333332 25889999999999888888776554
No 40
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=68.70 E-value=50 Score=28.11 Aligned_cols=39 Identities=13% Similarity=0.187 Sum_probs=32.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 006822 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLL 567 (630)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLedQl~s~keenK~L 567 (630)
...++.|.++++.-+..|....+.++.++..++.....+
T Consensus 72 ~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 72 VAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888999999999999888888888888877766554
No 41
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=68.65 E-value=11 Score=35.24 Aligned_cols=19 Identities=32% Similarity=0.342 Sum_probs=8.0
Q ss_pred HHhhhhhHHHHHHHHHHHh
Q 006822 385 LYGAESRAESAEEKVTQLT 403 (630)
Q Consensus 385 l~rAEsRa~tAesKle~Ls 403 (630)
-..||++....+..++.||
T Consensus 62 R~~aE~~~~~ie~ElE~LT 80 (135)
T 2e7s_A 62 RTKAEEEADKLNKEVEDLT 80 (135)
T ss_dssp HHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444
No 42
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=65.34 E-value=28 Score=29.82 Aligned_cols=55 Identities=15% Similarity=0.296 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh------------HHHHHhHHHHHHHHHHHHHhh
Q 006822 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS------------QEQLNEMDNFIESLKESLYGA 388 (630)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~aklEes------------E~EVaaLerrIelLKEel~rA 388 (630)
+.+..|++-+...|.||-.+.-.|..|....+.- .+.|++++..|..||..+..+
T Consensus 5 ~~l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~~~V~~lq~Ki~elkrqlAd~ 71 (78)
T 2ic6_A 5 STLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADL 71 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677889999999999999999999888777552 668999999999999887654
No 43
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=64.37 E-value=27 Score=31.44 Aligned_cols=18 Identities=17% Similarity=0.429 Sum_probs=8.4
Q ss_pred HHHHHhHHHHHHHHHHHH
Q 006822 368 QEQLNEMDNFIESLKESL 385 (630)
Q Consensus 368 E~EVaaLerrIelLKEel 385 (630)
..+|..|.|.|+.|.-++
T Consensus 37 k~Ei~elrr~iq~L~~el 54 (131)
T 3tnu_A 37 KSEISELRRTMQNLEIEL 54 (131)
T ss_dssp ----CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445666666666655554
No 44
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=63.00 E-value=36 Score=31.34 Aligned_cols=54 Identities=11% Similarity=0.246 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhh
Q 006822 338 TMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESR 391 (630)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsR 391 (630)
.|...+..+++++-.+...|..++.+++....++..+.+.|..|..++-+.|+.
T Consensus 79 ~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~ 132 (138)
T 3hnw_A 79 SLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETE 132 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444445555566666666666666666666666666666665543
No 45
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=61.75 E-value=8.2 Score=34.72 Aligned_cols=74 Identities=23% Similarity=0.303 Sum_probs=48.5
Q ss_pred HhhhhHHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhh--hHHHHHhhcCChhHHHHHHHHHHHHHHHHHHH
Q 006822 279 LMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAK--DMVLQKLESTKNSEVLTMKEKVKSLEEQLKES 353 (630)
Q Consensus 279 L~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k--~~~lekl~~s~esEv~sLqkKvksLE~qLdes 353 (630)
|.||-+-+.+-|+-+|-.++.-...=..-+-||++++.+-+.- +.....+.. +.++|..|+.|+..|..++.+.
T Consensus 26 ~~~~~~~tM~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~-R~~~Vsalq~KiaeLKrqLAd~ 101 (107)
T 2k48_A 26 FQGIDPFTMSTLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQN-RRAAVSTLETKLGELKRQLADL 101 (107)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666666666555554444444567999999888864 233333433 5788999999988888887654
No 46
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=60.33 E-value=33 Score=30.41 Aligned_cols=57 Identities=14% Similarity=0.276 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh------------HHHHHhHHHHHHHHHHHHHhhhh
Q 006822 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS------------QEQLNEMDNFIESLKESLYGAES 390 (630)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~aklEes------------E~EVaaLerrIelLKEel~rAEs 390 (630)
+.+..|++-+...|.||-.+.-.|..|....+.- .+.|++++..|..||..+..+-.
T Consensus 5 ~~i~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNk~~~~~R~~~V~~lq~Ki~elkr~lAd~v~ 73 (96)
T 2ic9_A 5 STLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADLIA 73 (96)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4577889999999999999999999888777652 66899999999999988866543
No 47
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=58.93 E-value=80 Score=28.56 Aligned_cols=82 Identities=24% Similarity=0.274 Sum_probs=48.9
Q ss_pred HHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHH
Q 006822 468 LIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLA 547 (630)
Q Consensus 468 vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~ 547 (630)
.|.+|+..|.-||+-+..--..|- +|.+|+.-.+..+...+.--.++.--+.-+-.+=..|- +++
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~id-------elk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadRE--------kl~ 89 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELID-------KLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHARE--------KLV 89 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH--------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHH--------HHH
Confidence 366677777777766666666677 77777777666555444444445444555544444443 345
Q ss_pred HHHHHHHHHHHHHHHhh
Q 006822 548 TQRELIQKQVYSLTSEN 564 (630)
Q Consensus 548 ~ErdrLedQl~s~keen 564 (630)
.+.++|..|+..+...|
T Consensus 90 ~eKe~L~~ql~~Lq~q~ 106 (110)
T 2v4h_A 90 EKKEYLQEQLEQLQREF 106 (110)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 56666666666655544
No 48
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=57.35 E-value=1.7e+02 Score=30.24 Aligned_cols=71 Identities=14% Similarity=0.282 Sum_probs=45.4
Q ss_pred hhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHH
Q 006822 426 KVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQS 505 (630)
Q Consensus 426 K~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~ 505 (630)
....|.+||-+++.-+.++++-|..... +|- ++.+-|-.|++.++.|.+..|..+. +||.+|.
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 460 (471)
T 3mq9_A 398 VTHLLQQELTEAQKGFQDVEAQAATANH-------TVM---ALMASLDAEKAQGQKKVEELEGEIT-------TLNHKLQ 460 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH---HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhcch-------hHH---HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence 4677888888888777777766555443 121 3334444777778877666666666 6666666
Q ss_pred HHHhhHHH
Q 006822 506 FMRDKIKI 513 (630)
Q Consensus 506 ~l~~~lks 513 (630)
..+..++.
T Consensus 461 ~~~~~~~~ 468 (471)
T 3mq9_A 461 DASAEVER 468 (471)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66555553
No 49
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=57.26 E-value=13 Score=31.87 Aligned_cols=65 Identities=15% Similarity=0.217 Sum_probs=50.0
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHH--hhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhHh
Q 006822 378 IESLKESLYGAESRAESAEEKVTQLTDTNLELSEE--INFLKGNNDSNTKKVGILENQLRDLEIQLQQAKV 446 (630)
Q Consensus 378 IelLKEel~rAEsRa~tAesKle~LseTNdELere--lk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~a 446 (630)
|+.|.+++..-|..+.+|..|++.++++..---.+ ...+..|. .=+..|+..|.+.+.||..+++
T Consensus 7 l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~----~~V~~lq~Ki~elkrqlAd~va 73 (78)
T 2ic6_A 7 LKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRR----AAVSALETKLGELKRELADLIA 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHh
Confidence 78899999999999999999999998876433222 23455553 3578899999999888877766
No 50
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=56.20 E-value=89 Score=26.18 Aligned_cols=36 Identities=11% Similarity=0.166 Sum_probs=28.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006822 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSEN 564 (630)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLedQl~s~keen 564 (630)
...++.|.++++.-+..|....+.++.++..++...
T Consensus 67 ~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 67 TEELQEKLETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888899999888888888888888877766543
No 51
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=54.07 E-value=31 Score=38.11 Aligned_cols=30 Identities=13% Similarity=0.140 Sum_probs=7.4
Q ss_pred HHHhHHHHHHHHhhhhhhhhhhhhhhhhhh
Q 006822 461 AIWDMETLIEDLKSKVSKAESKTESVEEQC 490 (630)
Q Consensus 461 ei~dme~vIEdLk~Kl~rAE~RaE~aEsKc 490 (630)
+..+++.-...|+.++..|....+.+..+.
T Consensus 427 ~~~~~~~e~~~~~~~~~~a~~~~~~~~~~l 456 (575)
T 2i1j_A 427 EVELKDSETRRLQEEVEDARRKQDEAAAAL 456 (575)
T ss_dssp ---------------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555666666555544444443
No 52
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=53.62 E-value=5.1 Score=29.59 Aligned_cols=31 Identities=23% Similarity=0.260 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 006822 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACF 364 (630)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~akl 364 (630)
+++..+.+|++.|+.+++.+++++..++..+
T Consensus 4 ~~i~avKkKiq~lq~q~d~aee~~~~~~~~l 34 (37)
T 3azd_A 4 SSLEAVRRKIRSLQEQNYHLENEVARLKKLV 34 (37)
T ss_dssp --CHHHHHHHHHHHHHTTTTHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566788888888888888888777776554
No 53
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=53.56 E-value=1.2e+02 Score=27.11 Aligned_cols=73 Identities=19% Similarity=0.277 Sum_probs=39.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh----HHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhh
Q 006822 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS----QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDT 405 (630)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEes----E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseT 405 (630)
..|+..+...++.|+-+++....+-..-...+.+. ..++..++..|..|+..+.++....+.-...+..|-..
T Consensus 37 k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~v 113 (131)
T 3tnu_A 37 KSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDV 113 (131)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777788888888877765544433222222222 34666777777777777766655555444444444433
No 54
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=53.36 E-value=50 Score=28.37 Aligned_cols=59 Identities=22% Similarity=0.262 Sum_probs=44.9
Q ss_pred HHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHH
Q 006822 459 YSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESS 517 (630)
Q Consensus 459 ysei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~s 517 (630)
.++|.-+.--|++||.+-......++.+-+....|...|..|.+|......|+.+|=.+
T Consensus 19 vdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 19 IDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56677777778888888776666666666666677888889999999998888877433
No 55
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=52.74 E-value=54 Score=29.81 Aligned_cols=56 Identities=14% Similarity=0.233 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh------------HHHHHhHHHHHHHHHHHHHhhhh
Q 006822 335 EVLTMKEKVKSLEEQLKESEIRLQNANACFQTS------------QEQLNEMDNFIESLKESLYGAES 390 (630)
Q Consensus 335 Ev~sLqkKvksLE~qLdes~eQL~~A~aklEes------------E~EVaaLerrIelLKEel~rAEs 390 (630)
.+..|++-+...|.||-.+.-.|..|....+.- .+.|++++..|..||..+..+-.
T Consensus 23 ~ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl~~R~~~Vs~lq~KiaeLKrqLAd~va 90 (113)
T 4fi5_A 23 TMEELQREINAHEGQLVIARQKVRDAEKQYEKDPDELNKRTLTDREGVAVSIQAKIDELKRQLADRIA 90 (113)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788889999999999999998887776552 66889999999999988765543
No 56
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=52.27 E-value=1.3e+02 Score=26.82 Aligned_cols=73 Identities=16% Similarity=0.257 Sum_probs=44.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh----HHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhh
Q 006822 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS----QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDT 405 (630)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEes----E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseT 405 (630)
..|+..+...++.|+-+++....+-..-...+.+. ..++..++..|..|+..+.++....+.-...+..|-..
T Consensus 35 k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~Llnv 111 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQELMNT 111 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888888888888776655433333333222 34667777777777777776655555444444444333
No 57
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=51.95 E-value=16 Score=33.20 Aligned_cols=66 Identities=17% Similarity=0.196 Sum_probs=51.2
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHH--hhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhHhh
Q 006822 378 IESLKESLYGAESRAESAEEKVTQLTDTNLELSEE--INFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVS 447 (630)
Q Consensus 378 IelLKEel~rAEsRa~tAesKle~LseTNdELere--lk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~as 447 (630)
|+.|.+++..-|..+.+|..|+..++++..---.+ ...+..|. .=+..|+..|.+.+-||.-+++.
T Consensus 24 ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl~~R~----~~Vs~lq~KiaeLKrqLAd~va~ 91 (113)
T 4fi5_A 24 MEELQREINAHEGQLVIARQKVRDAEKQYEKDPDELNKRTLTDRE----GVAVSIQAKIDELKRQLADRIAT 91 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 78999999999999999999999998876433222 34566663 35788999999999888777763
No 58
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=51.17 E-value=74 Score=26.97 Aligned_cols=32 Identities=28% Similarity=0.251 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCC
Q 006822 546 LATQRELIQKQVYSLTSENKLLVEKLQYSGKS 577 (630)
Q Consensus 546 L~~ErdrLedQl~s~keenK~L~ekld~tkk~ 577 (630)
=.+-.+||.|+|-++.-+|+.|.++|..++.|
T Consensus 44 k~kd~ErLNDEiislNIENNlL~~rl~~l~~E 75 (75)
T 3a7o_A 44 KNKNTERLNDELISGTIENNVLQQKLSDLKKE 75 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred hcccHHHhhHHHHHhHHHHHHHHHHHHHHhcC
Confidence 34678999999999999999999999987754
No 59
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=50.99 E-value=18 Score=32.10 Aligned_cols=66 Identities=15% Similarity=0.203 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHH--hhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhHh
Q 006822 377 FIESLKESLYGAESRAESAEEKVTQLTDTNLELSEE--INFLKGNNDSNTKKVGILENQLRDLEIQLQQAKV 446 (630)
Q Consensus 377 rIelLKEel~rAEsRa~tAesKle~LseTNdELere--lk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~a 446 (630)
-|+.|.+++..-|..+..|..|+..++.+..---.+ ...+..|. .=+..|+..|.+.+.||..+++
T Consensus 6 ~i~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNk~~~~~R~----~~V~~lq~Ki~elkr~lAd~v~ 73 (96)
T 2ic9_A 6 TLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRR----AAVSALETKLGELKRELADLIA 73 (96)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHh
Confidence 378899999999999999999999998876433222 34566663 3578899999999888877776
No 60
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=50.05 E-value=17 Score=40.06 Aligned_cols=16 Identities=31% Similarity=0.322 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhhHH
Q 006822 378 IESLKESLYGAESRAE 393 (630)
Q Consensus 378 IelLKEel~rAEsRa~ 393 (630)
+.+|.++..+||.-+.
T Consensus 365 ~~~l~e~~~~~~~e~~ 380 (575)
T 2i1j_A 365 ILRLEEQLRQLQAAKE 380 (575)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444433
No 61
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=45.70 E-value=69 Score=25.39 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=19.3
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhhhHHH
Q 006822 368 QEQLNEMDNFIESLKESLYGAESRAES 394 (630)
Q Consensus 368 E~EVaaLerrIelLKEel~rAEsRa~t 394 (630)
.++|.++..-|+-.|++..||=.|+.+
T Consensus 24 ssdV~al~~~v~~ak~eA~RAN~RlDN 50 (52)
T 1jcd_A 24 SNDANAARSDAQAAKDDAARANQRADN 50 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 335566666677888888888888764
No 62
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=45.41 E-value=1.8e+02 Score=26.63 Aligned_cols=23 Identities=17% Similarity=0.351 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Q 006822 339 MKEKVKSLEEQLKESEIRLQNAN 361 (630)
Q Consensus 339 LqkKvksLE~qLdes~eQL~~A~ 361 (630)
.+.....|+.+|..+++-|..+.
T Consensus 23 CrN~T~lLq~qLTqAQe~l~~~e 45 (121)
T 3mq7_A 23 ARNVTHLLQQELTEAQKGFQDVE 45 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHH
Confidence 45556677777777666665554
No 63
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=44.15 E-value=1.8e+02 Score=26.27 Aligned_cols=52 Identities=23% Similarity=0.269 Sum_probs=35.6
Q ss_pred hHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 006822 305 SELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRL 357 (630)
Q Consensus 305 sel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL 357 (630)
.+|+.+|..+++.|..+...+++|... ..-...-.+.|.-|+.|.+-|..--
T Consensus 27 ~~L~~~L~~AEeaL~~Kq~~idelk~e-i~q~~~~lE~I~vLkaQv~IY~~DF 78 (110)
T 2v4h_A 27 EDLRQQLQQAEEALVAKQELIDKLKEE-AEQHKIVMETVPVLKAQADIYKADF 78 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999988888887764 2222222246677777777766553
No 64
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=43.08 E-value=2.4e+02 Score=28.36 Aligned_cols=60 Identities=23% Similarity=0.313 Sum_probs=43.0
Q ss_pred HHhhhhhhhhHHhHHHHHHHHHhhhhcccceeccccchhhHHHHHHHhHhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhh
Q 006822 99 DLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVL 178 (630)
Q Consensus 99 DlL~gildsEv~ele~~~~~lq~~I~~~~~~~~s~~~~~~~f~~~~~~~~kL~~~~~sLkq~qe~~~ei~~qsa~f~r~~ 178 (630)
.+|++|||.=|.....+++.|..+|...+..+..... +..-.++..+|++...|.|.+
T Consensus 156 ~ll~~lld~ivd~~~~~l~~l~~~i~~lE~~l~~~~~----------------------~~~l~~l~~lrr~l~~lrr~l 213 (339)
T 4ev6_A 156 FLLYHILNEITRSYSRILMNLEDELEELEDKLLAGYD----------------------REVMEKILGLRKTLVYFHKSL 213 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCC----------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh----------------------hhHHHHHHHHHHHHHHHHHHh
Confidence 4788999988888888888888888777776654332 123345667777778887777
Q ss_pred hh
Q 006822 179 SY 180 (630)
Q Consensus 179 ~~ 180 (630)
.+
T Consensus 214 ~~ 215 (339)
T 4ev6_A 214 IA 215 (339)
T ss_dssp HH
T ss_pred hh
Confidence 54
No 65
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=41.82 E-value=56 Score=27.48 Aligned_cols=48 Identities=13% Similarity=0.021 Sum_probs=36.2
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC
Q 006822 528 SAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (630)
Q Consensus 528 tlKeae~Rak~aE~lV~KL~~ErdrLedQl~s~keenK~L~ekld~tk 575 (630)
-+-+++.|.-|-+++|..|...+=+-+.+|..+....+.|.+++....
T Consensus 15 Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 15 RLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356778888888888888888888888888888888888888777654
No 66
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=40.98 E-value=2e+02 Score=25.85 Aligned_cols=102 Identities=11% Similarity=0.101 Sum_probs=0.0
Q ss_pred chhchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHH
Q 006822 300 SLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIE 379 (630)
Q Consensus 300 s~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIe 379 (630)
+.+|+.+|++|.....-..+.-..-++.......+...+||+-+..|=..-+.+...+....-..+..+-.-.....-++
T Consensus 1 ~Ek~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLe 80 (111)
T 2v66_B 1 AEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLE 80 (111)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHH
Q ss_pred HHHHHHHhhhhhHHHHHHHHHH
Q 006822 380 SLKESLYGAESRAESAEEKVTQ 401 (630)
Q Consensus 380 lLKEel~rAEsRa~tAesKle~ 401 (630)
+++.++..|=+|-.--++.+.+
T Consensus 81 D~E~k~n~aiErnalLE~El~E 102 (111)
T 2v66_B 81 DFEQRLNQAIERNAFLESELDE 102 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 67
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=40.29 E-value=70 Score=27.78 Aligned_cols=64 Identities=11% Similarity=0.155 Sum_probs=30.4
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 006822 329 ESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQL 402 (630)
Q Consensus 329 ~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~L 402 (630)
|++++..+..|+.+..+||+++.+++.+.... ++.++..|..|+..+.++....+.-...+..|
T Consensus 7 ~~~~~~~~~~Lq~~~~~LE~~l~e~E~~~~~e----------~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~L 70 (95)
T 3mov_A 7 HSSRENLYFQGQKESRACLERIQELEDLLAKE----------KDNSRRMLTDKEREMAEIRDQMQQQLNDYEQL 70 (95)
T ss_dssp -----------CCCCHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHhhHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567778888888888888888887765433 34455555555555554444333333333333
No 68
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=40.14 E-value=1.8e+02 Score=25.65 Aligned_cols=88 Identities=24% Similarity=0.249 Sum_probs=50.6
Q ss_pred HHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHH
Q 006822 469 IEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLAT 548 (630)
Q Consensus 469 IEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ 548 (630)
|++|+..+.-||+-+-+-...|- +|.+++.-.+..+...+.--.++.--++-|-.|=..|- +++.
T Consensus 4 ~~~L~~~L~~aEeaL~~kq~~id-------~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadRE--------kl~~ 68 (94)
T 3jsv_C 4 LEDLRQQLQQAEEALVAKQELID-------KLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHARE--------KLVE 68 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHh
Confidence 44555566555555444445555 66666666665555555555555555666655555553 4566
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHH
Q 006822 549 QRELIQKQVYSLTSENKLLVEKL 571 (630)
Q Consensus 549 ErdrLedQl~s~keenK~L~ekl 571 (630)
+.++|..++..+...|..|+..+
T Consensus 69 eKe~L~~ql~~lq~q~~~L~~~~ 91 (94)
T 3jsv_C 69 KKEYLQEQLEQLQREFNKLKVGC 91 (94)
T ss_dssp TTSHHHHHHHHHHHTTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 77888888888877777766543
No 69
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=39.82 E-value=1.7e+02 Score=24.71 Aligned_cols=30 Identities=20% Similarity=0.349 Sum_probs=15.8
Q ss_pred HHhHHHHHHHHhhhhhhhhhhhhhhhhhhh
Q 006822 462 IWDMETLIEDLKSKVSKAESKTESVEEQCI 491 (630)
Q Consensus 462 i~dme~vIEdLk~Kl~rAE~RaE~aEsKc~ 491 (630)
+..+..=+..|+.++.+.+....-+|.++.
T Consensus 16 m~~~eeel~~lke~l~k~e~~rkele~~~~ 45 (89)
T 3bas_A 16 MKEQLKQMDKMKEDLAKTERIKKELEEQNV 45 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444454555555565555555455555544
No 70
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=38.88 E-value=45 Score=32.69 Aligned_cols=45 Identities=22% Similarity=0.430 Sum_probs=18.3
Q ss_pred HHHHHhhhhHHHHHhhcC----------ChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006822 314 FIEQLKAKDMVLQKLEST----------KNSEVLTMKEKVKSLEEQLKESEIRLQ 358 (630)
Q Consensus 314 ~~eqL~~k~~~lekl~~s----------~esEv~sLqkKvksLE~qLdes~eQL~ 358 (630)
..+||+..+..+++|..- ++.|+..|++++.+++.+.+.++.++.
T Consensus 11 ~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~ 65 (190)
T 4emc_A 11 VKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTS 65 (190)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence 345555555555544331 345555555555555555555554443
No 71
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=38.44 E-value=4.6e+02 Score=29.26 Aligned_cols=265 Identities=8% Similarity=0.074 Sum_probs=127.5
Q ss_pred hHHhHHHHHHHHHhhhhccccee------ccccchhhHHHHHHHhHhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhhc
Q 006822 108 ELREVERLLDTIHVEIVNVHHKI------SSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYF 181 (630)
Q Consensus 108 Ev~ele~~~~~lq~~I~~~~~~~------~s~~~~~~~f~~~~~~~~kL~~~~~sLkq~qe~~~ei~~qsa~f~r~~~~~ 181 (630)
|+..++..+.+|+..+....... +.+..+...+-.+ +....+.+..|.....+...+-....+|++....+
T Consensus 306 e~~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~~w~~L---~~~~~~r~~~l~~~~~R~~~Le~l~~~F~~~~~~~ 382 (863)
T 1sjj_A 306 EKCQLEINFNTLQTKLRLSNRPAFMPSEGKMVSDINNAWGGL---EQAEKGYEEWLLNEIRRLERLDHLAEKFRQKASIH 382 (863)
T ss_dssp HHHHHHHTTTHHHHHTTTTSSCCCCCSTTSCGGGHHHHHHHH---HHHHTTTHHHHHHHHEEHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666677776665433321 1222223322222 33333333433332222222223457788887777
Q ss_pred ccCCCcccccccccCCcccccccccccchHHHHHHHHHHHHhhhhhhhhhHhhHHHhhhHHHHHhhhhhhhHHHHHHHHH
Q 006822 182 IHGNNDEALEFSANGQLSNINGKSKMKNADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEA 261 (630)
Q Consensus 182 ~~~~~~~~~~~~e~~~~~~~~~~~~mqt~eqqR~iLrMLekSla~EldLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~ 261 (630)
..|-.+....+.. ..+++ ..+.++..+..-...++..|+. .+..+.......++|...=|+-. ..+..-
T Consensus 383 ~~Wl~~~e~~l~~-~~~g~----~dl~~v~~ll~kh~~f~~el~~---~~~~v~~l~~~~~~L~~~~~~~~---~~I~~~ 451 (863)
T 1sjj_A 383 ESWTDGKEAMLQQ-KDYET----ATLSEIKALLKKHEAFESDLAA---HQDRVEQIAAIAQELNELDYYDS---PSVNAR 451 (863)
T ss_dssp HHHHHHHHHHHHS-CTTTS----SCHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHTCCTTH---HHHHHH
T ss_pred HHHHHHHHHHhhc-ccccC----CCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhCCcccH---HHHHHH
Confidence 7776655544443 22322 1233444444445666666654 34555555566666654333322 233444
Q ss_pred HHHHHHHHHhccchHHHHhhhhHHHHhhhh---HH--hhhcccchhchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHH
Q 006822 262 AEVVWGRFLEAENSAEVLMGISKEMLGRFQ---IV--QFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEV 336 (630)
Q Consensus 262 ~~~~~er~~EAENa~EvL~g~skel~gkLq---~~--qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv 336 (630)
...+..||-.=-.+++-=+..+...+..++ .. ||.-.+ .++.+=+...++.|...+. ....+++
T Consensus 452 ~~~l~~~W~~L~~~~~~R~~~L~~~l~~~q~~~~l~~~f~~~a-----~~~~~Wl~~~e~~l~~~~~------g~dl~~v 520 (863)
T 1sjj_A 452 CQKICDQWDNLGALTQKRREALERTEKLLETIDQLYLEYAKRA-----APFNNWMEGAMEDLQDTFI------VHTIEEI 520 (863)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----TTTHHHHHHHHHHHHCCCC------CSSSGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhcchHh------hccHHHH
Confidence 444555553322222222222222222222 11 332222 2344455555555543221 1235779
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH---hhhhhh---------------HHHHHhHHHHHHHHHHHHHhhhhhHHHHHH
Q 006822 337 LTMKEKVKSLEEQLKESEIRLQNAN---ACFQTS---------------QEQLNEMDNFIESLKESLYGAESRAESAEE 397 (630)
Q Consensus 337 ~sLqkKvksLE~qLdes~eQL~~A~---aklEes---------------E~EVaaLerrIelLKEel~rAEsRa~tAes 397 (630)
..|.+|...++.++......+.... ..+... ...+..+..+-+.|.+-+..=..|++.+..
T Consensus 521 e~ll~kh~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~rw~~L~~~~~~R~~~L~~~l~ 599 (863)
T 1sjj_A 521 QGLTTAHEQFKATLPDADKERQAILGIHNEVSKIVQTYHVNMAGTNPYTTITPQEINGKWEHVRQLVPRRDQALMEEHA 599 (863)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCSCCSSSSCCHHHHHHHHHHHHHHHHHHHHHHGGGHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988765543322 122110 113456666666666666666666666653
No 72
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=38.13 E-value=94 Score=28.51 Aligned_cols=72 Identities=24% Similarity=0.283 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhHhhh
Q 006822 374 MDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSS 448 (630)
Q Consensus 374 LerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asa 448 (630)
-.+...+|+..+-+|+.-+..++..-.--..|..-|..-|+..+.++ -.++.-|++.++..+.+|+.|-+-+
T Consensus 23 CrN~T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~---q~~vqeLqgEI~~Lnq~Lq~a~ae~ 94 (121)
T 3mq7_A 23 ARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQG---QKKVEELEGEITTLNHKLQDASAEV 94 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666555555555555555555544443 2456666666666666666554433
No 73
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1
Probab=37.84 E-value=1.9e+02 Score=29.41 Aligned_cols=108 Identities=16% Similarity=0.230 Sum_probs=71.1
Q ss_pred hhhhHHHHHHHHHhhcCCccccccCCCccchHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHHhhhhcccceeccccchhh
Q 006822 59 KLVNLHVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLRE 138 (630)
Q Consensus 59 Kl~NL~~l~M~~~~~~~~~E~~~~~~~~i~~~s~eka~efDlL~gildsEv~ele~~~~~lq~~I~~~~~~~~s~~~~~~ 138 (630)
|..=||.++..+.....++-.+..+-. +|++|--.|+ .-|.+++..|.+=+..++.++..... ..+.+.
T Consensus 176 k~TLLh~lv~~~~~~~p~l~~f~~eL~-----~v~~Askvs~--~~l~~~l~~l~~~~~~~~~~l~~~~~----~~~~~d 244 (340)
T 1v9d_A 176 KMTLLHFLAELCENDHPEVLKFPDELA-----HVEKASRVSA--ENLQKSLDQMKKQIADVERDVQNFPA----ATDEKD 244 (340)
T ss_dssp TSBHHHHHHHHHHHSCCTTSSGGGGCT-----THHHHHHCCH--HHHHHHHHHHHHHHHHHHHHHHTCCC----CSSSSC
T ss_pred CccHHHHHHHHHHHhCchhccchhHHH-----hHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHhccc----ccchhH
Confidence 444478888888777777766665433 3555554442 33567888888888888887765422 122345
Q ss_pred HHHHHHHhHhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhhcc
Q 006822 139 VFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFI 182 (630)
Q Consensus 139 ~f~~~~~~~~kL~~~~~sLkq~qe~~~ei~~qsa~f~r~~~~~~ 182 (630)
.|... |..-+.+++..+..++.+...+. ..|..+..+|.
T Consensus 245 ~f~~~--m~~Fl~~a~~~~~~l~~~~~~~~---~~~~~l~~yfg 283 (340)
T 1v9d_A 245 KFVEK--MTSFVKDAQEQYNKLRMMHSNME---TLYKELGDYFV 283 (340)
T ss_dssp CHHHH--HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHTT
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhC
Confidence 56532 47888899988888888877775 45777777775
No 74
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=37.27 E-value=1.6e+02 Score=25.34 Aligned_cols=28 Identities=36% Similarity=0.360 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHhhhhHHHHHHhhhhhc
Q 006822 391 RAESAEEKVTQLTDTNLELSEEINFLKG 418 (630)
Q Consensus 391 Ra~tAesKle~LseTNdELerelk~Les 418 (630)
|+++=..|.--|++.|..|+.++..+.+
T Consensus 17 RlAsyIdKVR~LEqqN~~Le~~i~~l~~ 44 (93)
T 3s4r_A 17 RFANLIDKVRFLEQQNKILLAELEQLKG 44 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444445555555555555555554444
No 75
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=37.09 E-value=1.4e+02 Score=22.92 Aligned_cols=50 Identities=18% Similarity=0.156 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHH
Q 006822 336 VLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESL 385 (630)
Q Consensus 336 v~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel 385 (630)
+..++.++...+..++.....+..++.++....+.+......|..++..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 7 KKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555544555555555555544443
No 76
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=36.56 E-value=1.3e+02 Score=23.51 Aligned_cols=44 Identities=14% Similarity=0.258 Sum_probs=34.3
Q ss_pred HHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006822 519 NRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTS 562 (630)
Q Consensus 519 ~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQl~s~ke 562 (630)
.+.-++|..|..+++.+.+..+.--..|..++..|..++..++.
T Consensus 14 ~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 14 SRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557888888888888888888888888888888877776653
No 77
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=36.09 E-value=2.8e+02 Score=26.09 Aligned_cols=58 Identities=19% Similarity=0.294 Sum_probs=46.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhh
Q 006822 331 TKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGA 388 (630)
Q Consensus 331 s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rA 388 (630)
.++..+..|+.-+.++-+++++.++.|.-+..-+.+-+..|--|..|...-.-++.+-
T Consensus 8 ~K~~~ia~L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~L 65 (167)
T 4gkw_A 8 DKEDEVADLKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKL 65 (167)
T ss_dssp CSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHH
Confidence 3678889999999999999999999988887777777777777777777766666554
No 78
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=36.00 E-value=1.5e+02 Score=26.30 Aligned_cols=21 Identities=19% Similarity=0.145 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 006822 540 MEMVMQLATQRELIQKQVYSL 560 (630)
Q Consensus 540 E~lV~KL~~ErdrLedQl~s~ 560 (630)
+..+.+|+.|+++|...+..+
T Consensus 74 ~~~~e~Lq~E~erLr~~v~~l 94 (100)
T 1go4_E 74 REDHSQLQAECERLRGLLRAM 94 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 478888889988888777654
No 79
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=35.21 E-value=3.7e+02 Score=29.40 Aligned_cols=29 Identities=10% Similarity=0.196 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHhhh
Q 006822 377 FIESLKESLYGAESRAESAEEKVTQLTDT 405 (630)
Q Consensus 377 rIelLKEel~rAEsRa~tAesKle~LseT 405 (630)
.|+.||..+...+.+..+|......+...
T Consensus 101 ~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~s 129 (464)
T 1m1j_B 101 VLRDLKDRVAKFSDTSTTMYQYVNMIDNK 129 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 35555555555555555544444444333
No 80
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=34.75 E-value=1.4e+02 Score=25.71 Aligned_cols=33 Identities=27% Similarity=0.339 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh
Q 006822 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQT 366 (630)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~aklEe 366 (630)
-|+..|.-||..+|++--.|+-.|..+++.+-.
T Consensus 26 qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~ 58 (81)
T 3qh9_A 26 QELRHLKIKVEELENERNQYEWKLKATKAEVAQ 58 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 578889999999999999999888888755433
No 81
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=34.50 E-value=1.2e+02 Score=25.36 Aligned_cols=58 Identities=19% Similarity=0.200 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHH
Q 006822 335 EVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAE 393 (630)
Q Consensus 335 Ev~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~ 393 (630)
|+..|-.+|..||.++...+.++.+...-. .--..++.+..++..++.++..+..|=.
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~ladp~~y~-~d~~~~~~l~~~l~~~e~eLe~~~erWe 80 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQVADASFFS-QPHEQTQKVLADMAAAEQELEQAFERWE 80 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTGGG-SCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccccc-CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777777777776543211 1234667777777777777777777754
No 82
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=33.70 E-value=1.1e+02 Score=29.98 Aligned_cols=46 Identities=22% Similarity=0.294 Sum_probs=27.0
Q ss_pred hhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhH
Q 006822 478 KAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANI 523 (630)
Q Consensus 478 rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q 523 (630)
.+++|.+.++.=+.-|.-.|.-|+++|......++.|..++..+..
T Consensus 10 ~~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~ 55 (190)
T 4emc_A 10 SVKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNA 55 (190)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677888888888878888888888888877777777766655443
No 83
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=33.47 E-value=1.4e+02 Score=26.39 Aligned_cols=78 Identities=24% Similarity=0.243 Sum_probs=48.0
Q ss_pred hHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHh-------HhhhhhhHHHHHhHHHH
Q 006822 305 SELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNA-------NACFQTSQEQLNEMDNF 377 (630)
Q Consensus 305 sel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A-------~aklEesE~EVaaLerr 377 (630)
.+|..+|..+++-|..+...+++|.+. ..-.....+.+.-|..|.+-|..--..= ...-+....+++.+.+.
T Consensus 5 ~~L~~~L~~aEeaL~~kq~~id~lke~-~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q 83 (94)
T 3jsv_C 5 EDLRQQLQQAEEALVAKQELIDKLKEE-AEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQRE 83 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 378999999999999999999988875 3333344466777777777776654322 22222224455555555
Q ss_pred HHHHHH
Q 006822 378 IESLKE 383 (630)
Q Consensus 378 IelLKE 383 (630)
+..|+.
T Consensus 84 ~~~L~~ 89 (94)
T 3jsv_C 84 FNKLKV 89 (94)
T ss_dssp TC----
T ss_pred HHHHHH
Confidence 555544
No 84
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=33.07 E-value=1.7e+02 Score=25.38 Aligned_cols=69 Identities=16% Similarity=0.209 Sum_probs=50.5
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 006822 499 ELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLL 567 (630)
Q Consensus 499 ELeEEL~~l~~~lksLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQl~s~keenK~L 567 (630)
+.++-|..+++.+..+|.-+...+...--|..++-.=-.-.=.+-.-|+..+..||..+-.+|+.|..+
T Consensus 16 ~fe~rL~~Yr~~IeelE~~L~s~s~~~~~Tpq~L~~~l~~~h~~FiaLAa~l~~lH~~V~~~Ke~Yl~~ 84 (93)
T 3t98_B 16 QFEVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLSY 84 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777788888888888776654333334455544455555677789999999999999999999875
No 85
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=31.31 E-value=1.9e+02 Score=24.22 Aligned_cols=35 Identities=14% Similarity=0.225 Sum_probs=21.2
Q ss_pred HHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006822 325 LQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNA 360 (630)
Q Consensus 325 lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A 360 (630)
.++|... +.+...|.++|+.+|.++..+...=...
T Consensus 6 ~~kLq~~-E~~N~~Le~~v~~le~~Le~s~~~q~~~ 40 (72)
T 3cve_A 6 HMKLQEV-EIRNKDLEGQLSEMEQRLEKSQSEQDAF 40 (72)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443 4666677777777777777766543333
No 86
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=31.26 E-value=2.7e+02 Score=25.39 Aligned_cols=71 Identities=13% Similarity=0.113 Sum_probs=42.9
Q ss_pred HHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---------HHhhhHHHHHHhhcCC
Q 006822 506 FMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSL---------TSENKLLVEKLQYSGK 576 (630)
Q Consensus 506 ~l~~~lksLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQl~s~---------keenK~L~ekld~tkk 576 (630)
.+.++++.||+.++.....++.....-..-++.+.+.+.+...-...+..++.-. +..|+.++.++...++
T Consensus 6 ~i~~~l~~Leae~q~L~~~E~qry~~eka~AE~A~~~La~~~~l~~~i~er~~~i~~~~~~~~yk~~y~~l~k~Y~~~~k 85 (119)
T 3etw_A 6 SLVGELQALDAEYQNLANQEEARFNEERAQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYEDALK 85 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 4567778888888877777777766555556666666666655555555544332 3344455555544443
No 87
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=31.15 E-value=3.4e+02 Score=25.61 Aligned_cols=19 Identities=37% Similarity=0.436 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 006822 341 EKVKSLEEQLKESEIRLQN 359 (630)
Q Consensus 341 kKvksLE~qLdes~eQL~~ 359 (630)
++...||+.|-.+...|..
T Consensus 13 n~qs~LeD~L~~~R~el~~ 31 (154)
T 2ocy_A 13 DKQSHLEEQLNKSLKTIAS 31 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HhhccHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 88
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=29.97 E-value=16 Score=26.95 Aligned_cols=31 Identities=26% Similarity=0.313 Sum_probs=25.2
Q ss_pred HHHHhHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 006822 369 EQLNEMDNFIESLKESLYGAESRAESAEEKV 399 (630)
Q Consensus 369 ~EVaaLerrIelLKEel~rAEsRa~tAesKl 399 (630)
+.+.++.++|+-|+.+.+.|+.|+..+..++
T Consensus 4 ~~i~avKkKiq~lq~q~d~aee~~~~~~~~l 34 (37)
T 3azd_A 4 SSLEAVRRKIRSLQEQNYHLENEVARLKKLV 34 (37)
T ss_dssp --CHHHHHHHHHHHHHTTTTHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567899999999999999999998876554
No 89
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=29.39 E-value=2e+02 Score=25.96 Aligned_cols=19 Identities=21% Similarity=0.319 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhhhhhhhhh
Q 006822 473 KSKVSKAESKTESVEEQCI 491 (630)
Q Consensus 473 k~Kl~rAE~RaE~aEsKc~ 491 (630)
+.++..+|.||...|.+..
T Consensus 91 q~~~~e~E~kAqa~Eerf~ 109 (120)
T 3i00_A 91 QRSLSEIERKAQANEQRYS 109 (120)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555666555555554
No 90
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=29.23 E-value=2.5e+02 Score=23.50 Aligned_cols=33 Identities=21% Similarity=0.123 Sum_probs=30.2
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006822 528 SAKEVNHRTKLMMEMVMQLATQRELIQKQVYSL 560 (630)
Q Consensus 528 tlKeae~Rak~aE~lV~KL~~ErdrLedQl~s~ 560 (630)
-|+-+-.|.++.|..+.++...+..|+.|+.++
T Consensus 46 ~Al~aLkrKK~~E~qL~q~~~ql~~LE~q~~~i 78 (79)
T 4abm_A 46 AALQALKRKKRYEKQLAQIDGTLSTIEFQREAL 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 388889999999999999999999999999874
No 91
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=28.34 E-value=1.7e+02 Score=22.72 Aligned_cols=44 Identities=20% Similarity=0.301 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHH
Q 006822 338 TMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKES 384 (630)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEe 384 (630)
++.+||..||.-++..+..+..--+.. .+-..-|..||..|+..
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~---~ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEY---NATQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhc
Confidence 467888889888888888777665543 34444566777776654
No 92
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=28.34 E-value=1.5e+02 Score=22.78 Aligned_cols=39 Identities=23% Similarity=0.363 Sum_probs=27.9
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh
Q 006822 527 ASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQ 572 (630)
Q Consensus 527 ~tlKeae~Rak~aE~lV~KL~~ErdrLedQl~s~keenK~L~ekld 572 (630)
.|+-+++.|++-.+ .....|+..|+++.-+|.+|-+.++
T Consensus 3 aYl~eLE~r~k~le-------~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 3 AYLSELENRVKDLE-------NKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 47778887766544 4445566778888888988877665
No 93
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=28.21 E-value=1e+02 Score=32.10 Aligned_cols=50 Identities=18% Similarity=0.200 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhh
Q 006822 340 KEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAE 389 (630)
Q Consensus 340 qkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAE 389 (630)
++|++.+.+++..++..+..+...+...+..+..++.+|+.|+.+|..-+
T Consensus 4 ~~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~ 53 (323)
T 1lwu_C 4 QKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIR 53 (323)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555544444444344444455555555555444333
No 94
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=27.73 E-value=67 Score=29.91 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=9.2
Q ss_pred HHHHHHHHHhhhhhHHHHHHHH
Q 006822 378 IESLKESLYGAESRAESAEEKV 399 (630)
Q Consensus 378 IelLKEel~rAEsRa~tAesKl 399 (630)
+..|..++.+...+-..|+..+
T Consensus 48 ~~~L~~~l~eE~~~R~~aE~~~ 69 (135)
T 2e7s_A 48 VKRLREDIAKENELRTKAEEEA 69 (135)
T ss_dssp HHTHHHHHHHTTSHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444433
No 95
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=27.65 E-value=5.6e+02 Score=27.59 Aligned_cols=126 Identities=13% Similarity=0.094 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhHhhhHhHH
Q 006822 373 EMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQ 452 (630)
Q Consensus 373 aLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~ 452 (630)
++.++|+.|+..|..-..--.++..-...+.+.--+-....+...+. =.+=.+.||.++.-.+ ...
T Consensus 64 ~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~---~~e~s~eLe~~i~~lk-----------~~V 129 (390)
T 1deq_A 64 DFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNT---FKQINEDLRSRIEILR-----------RKV 129 (390)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHH---HHHHHHHHHHHHHHHH-----------HHH
Q ss_pred HHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHH
Q 006822 453 EQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILE 515 (630)
Q Consensus 453 eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE 515 (630)
. ...-.|+.+..+|+++..|..|-|.-.+..=.-|.+=-.-++++.=.+..|.+-.|.|+
T Consensus 130 ~---~q~~~ir~Lq~~l~~q~~kiqRLE~~Id~c~~~C~~sC~~~l~~~vD~e~ye~qqKQL~ 189 (390)
T 1deq_A 130 I---EQVQRINLLQKNVRDQLVDMKRLEVDIDIKIRSCKGSCSRALEHKVDLEDYKNQQKQLE 189 (390)
T ss_pred H---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhccHHHHHHHHHHHH
No 96
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A {Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B* 1ux4_A
Probab=26.36 E-value=2e+02 Score=29.89 Aligned_cols=106 Identities=10% Similarity=0.096 Sum_probs=68.3
Q ss_pred HHHHHHHHHhhcCCccccccCCCccchHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHHhhhhcccceeccc--cchhhHH
Q 006822 63 LHVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDLLFGILDSELREVERLLDTIHVEIVNVHHKISSC--KHLREVF 140 (630)
Q Consensus 63 L~~l~M~~~~~~~~~E~~~~~~~~i~~~s~eka~efDlL~gildsEv~ele~~~~~lq~~I~~~~~~~~s~--~~~~~~f 140 (630)
||.++..+.....++-.+..+- .+|++|--.|+ .-|.++|++|.+=+..++.++.... ++.+ .|.+..|
T Consensus 261 Lh~l~~~v~~~~p~l~~f~~eL-----~~v~~Aakv~~--~~l~~d~~~L~~~l~~v~~~l~~~~--~s~~~~~~~~d~f 331 (411)
T 1ux5_A 261 LNYVEKIVRLNYPSFNDFLSEL-----EPVLDVVKVSI--EQLVNDCKDFSQSIVNVERSVEIGN--LSDSSKFHPLDKV 331 (411)
T ss_dssp HHHHHHHHHHHCGGGGGHHHHT-----HHHHHHTTCCH--HHHHHHHHHHHHHHHHHHHHHHHST--TTCTTSSCTTCCH
T ss_pred HHHHHHHHHHhCcccccccchh-----hhHHHHHCCCH--HHHHHHHHHHHHHHHHHHHHHHhcc--CCcccccCcccHH
Confidence 7778777777766666554432 34555544332 3456889999999999998886422 2221 1334445
Q ss_pred HHHHHhHhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhhcc
Q 006822 141 TIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFI 182 (630)
Q Consensus 141 ~~~~~~~~kL~~~~~sLkq~qe~~~ei~~qsa~f~r~~~~~~ 182 (630)
.. .|..-+..++..+...++++..+.. .|..+..+|.
T Consensus 332 ~~--~~~~fl~~a~~~~~~l~~~~~~~~~---~~~~l~~yfg 368 (411)
T 1ux5_A 332 LI--KTLPVLPEARKKGDLLEDEVKLTIM---EFESLMHTYG 368 (411)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHTT
T ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhC
Confidence 53 2367788888888888887776654 6777777775
No 97
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=26.18 E-value=70 Score=25.17 Aligned_cols=35 Identities=23% Similarity=0.327 Sum_probs=25.3
Q ss_pred hhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHH
Q 006822 483 TESVEEQCIVLSEDNFELKNKQSFMRDKIKILESS 517 (630)
Q Consensus 483 aE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~s 517 (630)
.+..|.++..|+..|.+|..++..++..+..|...
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566677778888888888888877777543
No 98
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=26.05 E-value=3e+02 Score=23.26 Aligned_cols=22 Identities=18% Similarity=0.401 Sum_probs=10.1
Q ss_pred hHHHHHHHHHhhHHHHHHHHHH
Q 006822 499 ELKNKQSFMRDKIKILESSLNR 520 (630)
Q Consensus 499 ELeEEL~~l~~~lksLE~sl~k 520 (630)
+|......++++++.++..+..
T Consensus 21 ~L~~~~~~l~~~i~~l~~~l~~ 42 (112)
T 1l8d_A 21 EITQRIGELKNKIGDLKTAIEE 42 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444433
No 99
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=25.07 E-value=4.8e+02 Score=29.27 Aligned_cols=28 Identities=7% Similarity=0.049 Sum_probs=19.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006822 534 HRTKLMMEMVMQLATQRELIQKQVYSLT 561 (630)
Q Consensus 534 ~Rak~aE~lV~KL~~ErdrLedQl~s~k 561 (630)
.+..+....|..+-.++.|||..|..-.
T Consensus 131 snIrvLQsnLedq~~kIQRLEvDIdiqi 158 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVDMKRLEVDIDIKI 158 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666777777888888887643
No 100
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=24.75 E-value=1.9e+02 Score=22.73 Aligned_cols=44 Identities=16% Similarity=0.259 Sum_probs=29.9
Q ss_pred HHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006822 518 LNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLT 561 (630)
Q Consensus 518 l~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQl~s~k 561 (630)
..+.-++|-.+..+++.+.+..+.-...|..++..|..++..++
T Consensus 13 A~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 13 ASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555777777877777777777666667777766666665554
No 101
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=24.55 E-value=4.4e+02 Score=29.55 Aligned_cols=21 Identities=14% Similarity=0.175 Sum_probs=15.4
Q ss_pred hhhhhhhhHhhHHHhhhHHHH
Q 006822 224 LARELDLEKKISELNQNEEQL 244 (630)
Q Consensus 224 la~EldLEkkL~es~~~eeeL 244 (630)
+--|.||-+.|.+.|+..+++
T Consensus 56 dkqErDltkrINELKnqLEdl 76 (562)
T 3ghg_A 56 DEVNQDFTNRINKLKNSLFEY 76 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHTHH
T ss_pred HhhcCcHHHHHHHHHHHHHHH
Confidence 345778888888877777777
No 102
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=24.39 E-value=1.7e+02 Score=22.89 Aligned_cols=40 Identities=18% Similarity=0.221 Sum_probs=24.9
Q ss_pred HHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006822 518 LNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSEN 564 (630)
Q Consensus 518 l~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQl~s~keen 564 (630)
....-.+|-.|+.+++.+ |.+|..+-..|..++..+...+
T Consensus 13 A~rSR~RKk~~~~~LE~~-------v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 13 ARESRRKKKEYVKSLENR-------VAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHh
Confidence 344456777888877776 4556666666666666555443
No 103
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=24.36 E-value=3.4e+02 Score=23.29 Aligned_cols=62 Identities=18% Similarity=0.196 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHH
Q 006822 337 LTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEK 398 (630)
Q Consensus 337 ~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesK 398 (630)
..+-+.+..|.-++++..++-.......++..+....+.+.|+-|+++...=++|+..-..|
T Consensus 16 q~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 16 QQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555555555555444444444455555667777777777777766666665555
No 104
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=23.67 E-value=4.1e+02 Score=23.97 Aligned_cols=72 Identities=15% Similarity=0.152 Sum_probs=32.1
Q ss_pred hccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 006822 493 LSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKL 571 (630)
Q Consensus 493 Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQl~s~keenK~L~ekl 571 (630)
+.+.+-+=.-++..+..++..-|..|...-+.=. .-..-+.+-+.+|...|+++..+|..+..+|-.|..+.
T Consensus 36 w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fs-------q~q~~vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~L~Gk~ 107 (112)
T 1x79_B 36 IKQSSEDSSHQISALVLRAQASEILLEELQQGLS-------QAKRDVQEQMAVLMQSREQVSEELVRLQKDNDSLQGKH 107 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhh
Confidence 3344444445555555555555544443322111 11233567788999999999999999999998887654
No 105
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=23.62 E-value=2.2e+02 Score=24.54 Aligned_cols=34 Identities=12% Similarity=0.264 Sum_probs=23.8
Q ss_pred hhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHH
Q 006822 475 KVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILE 515 (630)
Q Consensus 475 Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE 515 (630)
..--+++++.-+|.++- +|..|+..++.+++.|.
T Consensus 39 ~ni~~eskL~eae~rn~-------eL~~e~~~l~~~~eelq 72 (81)
T 1wt6_A 39 DNQNFASQLREAEARNR-------DLEAHVRQLQERMELLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 33344555555666666 99999999999888764
No 106
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=23.22 E-value=2.4e+02 Score=22.09 Aligned_cols=54 Identities=15% Similarity=0.221 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 006822 349 QLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQL 402 (630)
Q Consensus 349 qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~L 402 (630)
.|+.....+...+.-.-..-.|+..-+..|..+..+++++..|+..+..++..+
T Consensus 10 ~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~l 63 (65)
T 1gl2_D 10 GLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTLV 63 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444333444567888889999999999999999999998887654
No 107
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=23.12 E-value=69 Score=23.08 Aligned_cols=18 Identities=17% Similarity=0.322 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006822 541 EMVMQLATQRELIQKQVY 558 (630)
Q Consensus 541 ~lV~KL~~ErdrLedQl~ 558 (630)
-.|++|++.+|||++-+.
T Consensus 13 ~ivq~lq~r~drle~tvq 30 (32)
T 2akf_A 13 AIVQKLQERLDRLEETVQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 468899999999988653
No 108
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=22.50 E-value=2.6e+02 Score=23.59 Aligned_cols=43 Identities=23% Similarity=0.324 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHh
Q 006822 345 SLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYG 387 (630)
Q Consensus 345 sLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~r 387 (630)
.|+..|..-.++|..-..-.++.+.++...+..|..|..++++
T Consensus 23 eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 23 DLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333343333333333333333444444444455555555443
No 109
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=22.22 E-value=4.4e+02 Score=23.84 Aligned_cols=63 Identities=19% Similarity=0.234 Sum_probs=40.0
Q ss_pred HHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhh
Q 006822 407 LELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAE 480 (630)
Q Consensus 407 dELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE 480 (630)
.|+..-.+.|++. +..+|-+|.+. +.|+.+++..-.+=+.--.++.+--..|.+++.++...+
T Consensus 63 ~E~~~~~~EL~~~-------l~sie~dLeDL----e~sI~ivE~np~kF~l~~~Ei~~Rr~fV~~~r~~I~~mk 125 (130)
T 4dnd_A 63 EELDWTTNELRNG-------LRSIEWDLEDL----EETIGIVEANPGKFKLPAGDLQERKVFVERMREAVQEMK 125 (130)
T ss_dssp CHHHHHHHHHHHH-------HHHHHHHHHHH----HHHHHHHHHCHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHH----HHHHHHHHhCHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555553 67788888775 488888886665211112367777788887777766444
No 110
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=21.96 E-value=1.3e+02 Score=31.81 Aligned_cols=19 Identities=16% Similarity=0.307 Sum_probs=11.9
Q ss_pred CcccccccchHHHHHHHHh
Q 006822 600 NLAGATVKTSEDAVSLMKS 618 (630)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~ 618 (630)
+++-..+.+.+++..+|..
T Consensus 236 ~l~~~~v~s~~e~~~ll~~ 254 (403)
T 4etp_A 236 NVTSVKLESEEMVEIILKK 254 (403)
T ss_dssp TCCCEECCCHHHHHHHHHH
T ss_pred CcEEEEeCCHHHHHHHHHH
Confidence 3445566777777777654
No 111
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=21.53 E-value=86 Score=23.44 Aligned_cols=26 Identities=31% Similarity=0.332 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHH
Q 006822 544 MQLATQRELIQKQVYSLTSENKLLVE 569 (630)
Q Consensus 544 ~KL~~ErdrLedQl~s~keenK~L~e 569 (630)
-||-++++.=..+|.+++++|..|.+
T Consensus 10 ekLhk~ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 10 EKLHKEIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 47888888889999999999988753
No 112
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=21.52 E-value=3.7e+02 Score=22.65 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 006822 337 LTMKEKVKSLEEQLKESEIRLQ 358 (630)
Q Consensus 337 ~sLqkKvksLE~qLdes~eQL~ 358 (630)
..|.++...++..++....++.
T Consensus 73 ~~L~~~~e~ie~~i~~le~~~~ 94 (117)
T 2zqm_A 73 AELKEKIETLEVRLNALERQEK 94 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333
No 113
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=21.37 E-value=2.6e+02 Score=23.83 Aligned_cols=61 Identities=16% Similarity=0.298 Sum_probs=0.0
Q ss_pred hhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHH-------HHHHHhHhhhhhhHHHHHhHHHHHHHH
Q 006822 320 AKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESE-------IRLQNANACFQTSQEQLNEMDNFIESL 381 (630)
Q Consensus 320 ~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~-------eQL~~A~aklEesE~EVaaLerrIelL 381 (630)
.++...++|... +.....|.++|..+|.++..+. ..+..+...++-.--++.++..-+..|
T Consensus 7 e~e~~~~klq~~-E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL 74 (79)
T 3cvf_A 7 EREETQQKVQDL-ETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARL 74 (79)
T ss_dssp ---CTTHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
No 114
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A
Probab=20.54 E-value=2.3e+02 Score=30.33 Aligned_cols=110 Identities=16% Similarity=0.203 Sum_probs=74.8
Q ss_pred hhhhhHHHHHHHHHhhcCCccccccCCCccchHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHHhhhhcccceeccccchh
Q 006822 58 EKLVNLHVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLR 137 (630)
Q Consensus 58 EKl~NL~~l~M~~~~~~~~~E~~~~~~~~i~~~s~eka~efDlL~gildsEv~ele~~~~~lq~~I~~~~~~~~s~~~~~ 137 (630)
=|..=||.++..+.....++-.+..+-. +|++|--.|+ .-|.++|++|.+=+..++.+|...... ++.+ +
T Consensus 257 ~k~TLLhylv~~v~~~~p~l~~f~~eL~-----~v~~Askv~~--~~l~~~~~~L~~~l~~v~~~l~~~~~~--~~~~-~ 326 (483)
T 2j1d_G 257 KNITLLHYLITIVENKYPSVLNLNEELR-----DIPQAAKVNM--TELDKEISTLRSGLKAVETELEYQKSQ--PPQP-G 326 (483)
T ss_dssp TTCBHHHHHHHHHHHHCGGGGGHHHHTT-----THHHHHTCCH--HHHHHHHHHHHHHHHHHHHHHHHHHTS--CCCT-T
T ss_pred CCccHHHHHHHHHHHhCchhhchHHHHh-----hHHHHhcCCH--HHHHHHHHHHHHHHHHHHHHHHHhhcc--CCCc-h
Confidence 3555688999988888777776654433 3455555443 446788999999999998888765332 1222 3
Q ss_pred hHHHHHHHhHhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhhcc
Q 006822 138 EVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFI 182 (630)
Q Consensus 138 ~~f~~~~~~~~kL~~~~~sLkq~qe~~~ei~~qsa~f~r~~~~~~ 182 (630)
..|... |..=+..+...+...+.++..+.. .|..+..+|.
T Consensus 327 d~f~~~--m~~Fl~~a~~~~~~L~~~~~~~~~---~~~~l~~yFG 366 (483)
T 2j1d_G 327 DKFVSV--VSQFITVASFSFSDVEDLLAEAKD---LFTKAVKHFG 366 (483)
T ss_dssp CCHHHH--HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHTT
T ss_pred hhHHHH--HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhC
Confidence 455532 478888899999988888888765 5666666664
No 115
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=20.33 E-value=4.5e+02 Score=23.22 Aligned_cols=16 Identities=13% Similarity=0.314 Sum_probs=6.6
Q ss_pred HHHHHHhhhhhhhhhh
Q 006822 467 TLIEDLKSKVSKAESK 482 (630)
Q Consensus 467 ~vIEdLk~Kl~rAE~R 482 (630)
.=+..|+.++.+...+
T Consensus 26 ~e~~~L~~~l~eE~~~ 41 (97)
T 2eqb_B 26 DEVKRLREDIAKENEL 41 (97)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344444444443
No 116
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=20.17 E-value=3e+02 Score=24.67 Aligned_cols=46 Identities=11% Similarity=0.093 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhc
Q 006822 373 EMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKG 418 (630)
Q Consensus 373 aLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Les 418 (630)
++-=.|..||+.+..-|+-.....-.+.+.+.-...+++....|..
T Consensus 27 al~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~ 72 (103)
T 4h22_A 27 NFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQF 72 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444566666666555555555444444444444444444444433
Done!