Query 006823
Match_columns 630
No_of_seqs 311 out of 890
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 09:54:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006823.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006823hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hu3_A EIF4GII; heat repeat, t 100.0 1.3E-56 4.5E-61 460.1 21.5 242 47-297 7-260 (260)
2 2vso_E Eukaryotic initiation f 100.0 4.1E-53 1.4E-57 439.5 24.4 248 31-280 2-284 (284)
3 3rk6_A Polyadenylate-binding p 100.0 2.3E-48 7.8E-53 392.0 17.1 207 45-274 13-234 (234)
4 2i2o_A EIF4G-like protein; pro 100.0 5.2E-44 1.8E-48 358.0 11.4 193 62-283 11-213 (224)
5 2rg8_A Programmed cell death p 100.0 2.7E-33 9.2E-38 267.6 14.4 156 457-614 1-156 (165)
6 2ion_A PDCD4, programmed cell 100.0 8.6E-33 2.9E-37 260.6 11.1 138 460-600 3-141 (152)
7 2nsz_A Programmed cell death p 100.0 9.7E-32 3.3E-36 247.0 11.4 124 461-584 2-126 (129)
8 2zu6_B Programmed cell death p 100.0 6E-29 2.1E-33 259.6 12.9 144 452-600 151-296 (307)
9 1ug3_A EIF4GI, eukaryotic prot 100.0 2.1E-29 7.3E-34 267.6 8.9 157 458-614 3-160 (339)
10 3eiq_C Programmed cell death p 99.9 3.9E-28 1.3E-32 257.7 13.2 144 452-600 202-347 (358)
11 3eiq_C Programmed cell death p 99.9 1.9E-28 6.6E-33 260.1 10.0 149 457-607 45-193 (358)
12 2zu6_B Programmed cell death p 99.9 4.3E-28 1.5E-32 253.2 9.3 144 464-609 1-144 (307)
13 3l6a_A Eukaryotic translation 99.9 5.4E-27 1.9E-31 250.7 14.8 154 459-616 5-159 (364)
14 1uw4_B UPF2, regulator of nons 99.7 1.5E-16 5.2E-21 159.9 20.0 217 52-301 5-244 (248)
15 1h2v_C 80 kDa nuclear CAP bind 98.8 5.9E-08 2E-12 112.6 18.3 197 46-280 3-227 (771)
16 4gmj_A CCR4-NOT transcription 95.6 0.25 8.5E-06 48.8 14.7 190 48-273 4-201 (229)
17 4b89_A General negative regula 95.0 0.15 5.1E-06 50.8 11.3 191 46-274 29-225 (249)
18 3u0r_A Apoptosis inhibitor 5; 78.9 44 0.0015 36.4 15.8 160 50-233 177-360 (507)
19 3pev_B Nucleoporin GLE1; RECA, 75.5 74 0.0025 32.3 17.7 170 50-235 43-245 (297)
20 4g26_A Pentatricopeptide repea 56.3 38 0.0013 36.8 9.7 68 469-536 29-105 (501)
21 4fu3_A Regulation of nuclear P 40.3 83 0.0028 27.5 7.7 126 458-589 2-130 (135)
22 4b8b_A General negative regula 35.2 1.9E+02 0.0065 32.2 10.8 89 463-551 445-543 (603)
23 4g26_A Pentatricopeptide repea 30.6 85 0.0029 34.0 7.3 82 469-551 108-190 (501)
24 3b2a_A TON_1937, putative unch 29.8 3.8E+02 0.013 26.5 10.9 127 473-608 12-145 (265)
25 1juq_A ADP-ribosylation factor 29.8 1.4E+02 0.0047 27.6 7.6 106 178-298 31-144 (171)
26 1h2v_C 80 kDa nuclear CAP bind 26.9 3.6E+02 0.012 31.0 11.9 58 509-571 96-154 (771)
27 3l39_A Putative PHOU-like phos 26.0 4.3E+02 0.015 25.1 11.1 61 469-529 42-105 (227)
28 3rjo_A Endoplasmic reticulum a 23.7 2.5E+02 0.0085 29.3 9.3 135 467-608 252-390 (419)
29 3us6_A Histidine-containing ph 23.0 2.1E+02 0.007 25.8 7.3 69 461-529 2-83 (153)
30 1u84_A Hypothetical protein; s 21.6 2.7E+02 0.0094 23.0 7.0 64 49-116 7-77 (90)
31 3cz6_A DNA-binding protein RAP 21.3 2.9E+02 0.01 25.5 7.7 62 461-529 42-105 (168)
32 3spa_A Mtrpol, DNA-directed RN 20.7 77 0.0026 38.0 4.7 86 470-555 169-265 (1134)
33 1yoz_A Hypothetical protein AF 20.4 66 0.0023 27.3 3.0 83 480-569 21-111 (116)
34 2qk2_A LP04448P; mini spindles 20.2 5.2E+02 0.018 23.9 10.8 83 483-573 75-163 (242)
No 1
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14
Probab=100.00 E-value=1.3e-56 Score=460.14 Aligned_cols=242 Identities=40% Similarity=0.721 Sum_probs=184.7
Q ss_pred hHHHHHHHHHHHhhcCChhhHHHHHHHHHHccCCChHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhh-hCCCCCCCCC
Q 006823 47 EKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNE-KLPPFPSDEP 125 (630)
Q Consensus 47 ~~e~l~r~vk~iLNKLTpenfd~l~~ql~~l~i~~~e~L~~vi~lIfeKAi~Ep~fs~~YA~LC~~L~~-~lp~~~~~e~ 125 (630)
+.+++.|+|++|||||||+||+.|+.||+++++.+.+.+++||++||+||+.||+|+.|||+||..|+. .+|.. +.
T Consensus 7 ~~~~l~r~v~giLNKLT~~nf~~i~~ql~~~~i~~~~~l~~vi~~if~kA~~ep~f~~~YA~Lc~~L~~~~~p~~---~~ 83 (260)
T 1hu3_A 7 KTQELFRKVRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVAYANMCRCLVTLKVPMA---DK 83 (260)
T ss_dssp HHHHHHHHHHHHHTCSSCCCHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCCCC-------
T ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhCCcc---cC
Confidence 347899999999999999999999999999999999999999999999999999999999999999988 46543 22
Q ss_pred CCchhhHHHHHHHHHHHHHhchhchHH-------HHhhcCChHH--HH--HHhhHHHHHHhhhhhHHHHHHHHHhcCCCC
Q 006823 126 GGKDITFKRILLNHCQEAFEGADNTRA-------EIRQMTAPEQ--EM--ERMDQERLVKLRTLGNIRLIGELLKQKMVP 194 (630)
Q Consensus 126 ~~~~~~Fr~~LL~~cQ~eFe~~~~~~~-------e~~~~~~~e~--e~--e~~d~e~~~K~r~lGnirFIGELfk~~~l~ 194 (630)
++....||++||++||++|++.+.... ++.....+++ ++ |..+.+.+.|+|++|+|+||||||+++|++
T Consensus 84 ~~~~~~Fr~~LL~rcq~eFe~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~e~ee~~~~~k~r~lg~i~FIgeLy~~~~l~ 163 (260)
T 1hu3_A 84 PGNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLT 163 (260)
T ss_dssp -----CHHHHHHHHHHHHHHHHTC------------------------------CCSSHHHHHHHHHHHHHHHHTTTCSC
T ss_pred CccchHHHHHHHHHHHHHHhcccchhhhHHHHhhhhcccCCHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHhcCCCC
Confidence 335678999999999999999875321 1111111111 00 111122457899999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHhhhhhcCCcchhhHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHH
Q 006823 195 EKIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLR 274 (630)
Q Consensus 195 e~I~~~ci~~LL~~~~~~~p~ee~IE~lc~LL~tiG~~Ld~~~k~~~~md~~f~rl~~l~~~~~ls~Rirfmi~dlidLR 274 (630)
++|||+||..||++ |+|++|||+|.||+|||+.|+. ++++..||.||.+|+.+..+.++|+|+||||+||+|||
T Consensus 164 ~~i~~~~l~~Ll~~-----~~e~~iE~l~~lL~tvG~~L~~-~~~~~~l~~~f~~l~~~~~~~~ls~Rirfmi~~l~dLR 237 (260)
T 1hu3_A 164 EAIMHDCVVKLLKN-----HDEESLECLCRLLTTIGKDLDF-EKAKPRMDQYFNQMEKIVKERKTSSRIRFMLQDVIDLR 237 (260)
T ss_dssp HHHHHHHHHHHHHS-----CSHHHHHHHHHHHHHHHHHHCC-TTTHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 99999999999986 7999999999999999999996 45567899999999999999999999999999999999
Q ss_pred hCCCCCcccccCCCcHHHHHHHH
Q 006823 275 ANNWVPRREEMKAKTITEIHSEA 297 (630)
Q Consensus 275 ~n~W~~r~~~~~pkti~ei~~ea 297 (630)
+|||++++.+.+||||+|||+||
T Consensus 238 ~~~W~~~~~~~~pkti~~i~~ea 260 (260)
T 1hu3_A 238 LCNWVSRRADQGPKTIEQIHKEA 260 (260)
T ss_dssp HTTTCC-----------------
T ss_pred HcCCCCCccccCCCcHHHHHhhC
Confidence 99999999999999999999987
No 2
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E*
Probab=100.00 E-value=4.1e-53 Score=439.49 Aligned_cols=248 Identities=29% Similarity=0.504 Sum_probs=195.6
Q ss_pred cccccCCcccccC-----------C---CChHHHHHHHHHHHhhcCChhhHHHHHHHHHHccC-----CChHHHHHHHHH
Q 006823 31 LIKAEVPWSARRG-----------N---LSEKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGI-----TTPDILKGVIEL 91 (630)
Q Consensus 31 l~~~~~~w~~~~~-----------~---~~~~e~l~r~vk~iLNKLTpenfd~l~~ql~~l~i-----~~~e~L~~vi~l 91 (630)
|++++|+|+|+.. . ..+.+++.|+|++|||||||+||+.|+.||+++++ .+.++|++||++
T Consensus 2 l~~s~~~w~P~~~~~~~~~~~~~~~~~~~~~~e~l~r~vkgiLNKLT~~nf~~i~~ql~~~~~~~~~~~~~~~l~~vi~~ 81 (284)
T 2vso_E 2 LVPSANRWVPKFKSKKTEKKLAPDGKTELLDKDEVERKMKSLLNKLTLEMFDAISSEILAIANISVWETNGETLKAVIEQ 81 (284)
T ss_dssp -----CCCCCC---------------CCCCCHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHGGGGCSBCHHHHHHHHH
T ss_pred CCCCCCCCCChhhhcccccccCCCcccccccHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhccccCcHHHHHHHHHH
Confidence 6788999988642 0 13578999999999999999999999999999876 678999999999
Q ss_pred HHHHHhcCCCchHHHHHHHHHHhhhCCCCCCCCCC-C--chhhHHHHHHHHHHHHHhchhch--HHHHhhcCChHHHH--
Q 006823 92 IFDKAVLEPTFCPMYALLCSDLNEKLPPFPSDEPG-G--KDITFKRILLNHCQEAFEGADNT--RAEIRQMTAPEQEM-- 164 (630)
Q Consensus 92 IfeKAi~Ep~fs~~YA~LC~~L~~~lp~~~~~e~~-~--~~~~Fr~~LL~~cQ~eFe~~~~~--~~e~~~~~~~e~e~-- 164 (630)
||+||++||+|+.|||+||..|+..+|....++.+ + +...||++||++||++|++.+.. ..... .+..+.|+
T Consensus 82 If~kA~~ep~fs~~YA~Lc~~l~~~l~~~i~~e~~~~k~g~~~Fr~~LL~rcq~eFe~~~~~~~~~~~~-~~~~e~e~~~ 160 (284)
T 2vso_E 82 IFLKACDEPHWSSMYAQLCGKVVKELNPDITDETNEGKTGPKLVLHYLVARCHAEFDKGWTDKLPTNED-GTPLEPEMMS 160 (284)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHHHHHSCTTCCBCC---CCTHHHHHHHHHHHHHHHHHHCCCSSCC-------------CC
T ss_pred HHHHHHcCcchHHHHHHHHHHHHHhcCcccccccccccchhhHHHHHHHHHHHHHHhhhhhhhhhhccc-cchhhhhhhh
Confidence 99999999999999999999999988754334332 1 24689999999999999997531 00000 00000110
Q ss_pred HHhhHHHHHHhhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHhhhhhcCCc------
Q 006823 165 ERMDQERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPK------ 238 (630)
Q Consensus 165 e~~d~e~~~K~r~lGnirFIGELfk~~~l~e~I~~~ci~~LL~~~~~~~p~ee~IE~lc~LL~tiG~~Ld~~~k------ 238 (630)
+..+++.+.|+|++|||+||||||+++|++++|||+||+.||++. ...|+|++|||||+||+|||+.||+...
T Consensus 161 ~e~~~~~~~k~r~lg~i~FIgeLyk~~~l~~~i~~~ci~~LL~~~-~~~p~e~~iE~l~~lL~tvG~~Ld~~~~~~~~~~ 239 (284)
T 2vso_E 161 EEYYAAASAKRRGLGLVRFIGFLYRLNLLTGKMMFECFRRLMKDL-TDSPSEETLESVVELLNTVGEQFETDSFRTGQAT 239 (284)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH-HSCCCHHHHHHHHHHHHHHHHHHTSCC-------
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHhccCCcHHHHHHHHHHHhccC-CCCCCHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 111233578899999999999999999999999999999999741 1248999999999999999999997642
Q ss_pred --chhhHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHhC-CCCC
Q 006823 239 --SRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRAN-NWVP 280 (630)
Q Consensus 239 --~~~~md~~f~rl~~l~~~~~ls~Rirfmi~dlidLR~n-~W~~ 280 (630)
++..||.||++|+.+..+.++|+||||||+||+|||+| ||++
T Consensus 240 ~~~~~~md~~f~~l~~l~~~~~ls~RirFml~dlidLR~n~~W~~ 284 (284)
T 2vso_E 240 LEGSQLLDSLFGILDNIIQTAKISSRIKFKLIDIKELRHDKNWNS 284 (284)
T ss_dssp -CHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHTSTTC-
T ss_pred hhhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcccCCCC
Confidence 35789999999999999999999999999999999997 9985
No 3
>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.3e-48 Score=392.04 Aligned_cols=207 Identities=24% Similarity=0.423 Sum_probs=179.2
Q ss_pred CChHHHHHHHHHHHhhcCC--hhhHHHHHHHHHHc---cCCChHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhCCC
Q 006823 45 LSEKDRVLKTVKGILNKLT--PEKFDVLKGQLIDS---GITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNEKLPP 119 (630)
Q Consensus 45 ~~~~e~l~r~vk~iLNKLT--penfd~l~~ql~~l---~i~~~e~L~~vi~lIfeKAi~Ep~fs~~YA~LC~~L~~~lp~ 119 (630)
.+..+.+.|+|++|||||| |+||+.++++|+++ .+++.+.|++||++||+||++||+||+|||+||.+|...++.
T Consensus 13 ~~~~~~l~r~v~~iLNkLT~~p~~f~~l~~~i~~~~~~~~~~~~~L~~vi~lIfekAi~ep~fs~~YA~LC~~l~~~l~~ 92 (234)
T 3rk6_A 13 MGRGSTLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMGARLCNYLSHHLTI 92 (234)
T ss_dssp -----CHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHHHCCC
T ss_pred ccchHHHHHHHHHHHHHccCChhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCC
Confidence 3456789999999999999 99999999999987 789999999999999999999999999999999999998764
Q ss_pred CCCCCCCCchhhHHHHHHHHHHHHHhchhchHHHHhhcCChHHHHHHhhHHHHHHhhhhhHHHHHHHHHhc--------C
Q 006823 120 FPSDEPGGKDITFKRILLNHCQEAFEGADNTRAEIRQMTAPEQEMERMDQERLVKLRTLGNIRLIGELLKQ--------K 191 (630)
Q Consensus 120 ~~~~e~~~~~~~Fr~~LL~~cQ~eFe~~~~~~~e~~~~~~~e~e~e~~d~e~~~K~r~lGnirFIGELfk~--------~ 191 (630)
.+ +..+||++||++||++|++.++.. + . | .++|+|++|+|+||||||++ +
T Consensus 93 ~~------~~~~Fr~lLL~rcQ~eFe~~~~~~----~---~-------d--~~~k~r~lg~i~FIgELf~~l~~~~~~~~ 150 (234)
T 3rk6_A 93 SP------QSGNFRQLLLQRCRTEYEVKDQAA----K---G-------D--EVTRKRFHAFVLFLGELYLNLEIKGTNGQ 150 (234)
T ss_dssp CC------TTCCHHHHHHHHHHHHHTTHHHHT----S---S-------C--HHHHHHHHHHHHHHHHHHHHCCEECTTSS
T ss_pred CC------chhHHHHHHHHHHHHHHHhhHHhh----h---c-------c--HHHHHHHHHHHHHHHHHHhhhcccccccc
Confidence 32 246899999999999999985321 1 1 1 13578999999999999998 8
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHhhhhhcC--CcchhhHHHHHHHHHHHhhCCCCChHHHHHHHH
Q 006823 192 MVPEKIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDEN--PKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHD 269 (630)
Q Consensus 192 ~l~e~I~~~ci~~LL~~~~~~~p~ee~IE~lc~LL~tiG~~Ld~~--~k~~~~md~~f~rl~~l~~~~~ls~Rirfmi~d 269 (630)
|++++|||.||.+||... ...|+|++|||+|+||+|||+.||+. ++++..||.||++|+.+..+..+|+||||||+|
T Consensus 151 ~l~e~I~~~ci~~Ll~~l-~~~p~ee~vE~l~~lL~tvG~~Ld~~~~~~~~~~md~~f~rl~~i~~~~~ls~Rirfml~d 229 (234)
T 3rk6_A 151 VTRADILQVGLRELLNAL-FSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLK 229 (234)
T ss_dssp EECCHHHHHHHHHHHHHH-HHSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhc-cCCCChHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 999999999999999752 12489999999999999999999963 345578999999999999999999999999999
Q ss_pred HHHHH
Q 006823 270 VLDLR 274 (630)
Q Consensus 270 lidLR 274 (630)
|||||
T Consensus 230 lieLR 234 (234)
T 3rk6_A 230 LVELR 234 (234)
T ss_dssp HHHHC
T ss_pred HHHhC
Confidence 99998
No 4
>2i2o_A EIF4G-like protein; protein structure initiative, PSI, cente eukaryotic structural genomics, CESG, structural genomics, function; HET: MSE; 1.92A {Danio rerio}
Probab=100.00 E-value=5.2e-44 Score=357.98 Aligned_cols=193 Identities=20% Similarity=0.347 Sum_probs=159.6
Q ss_pred CChhhHHHHHHHHHHccCC--ChHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhCCCCCCCCCCCchhhHHHHHHHH
Q 006823 62 LTPEKFDVLKGQLIDSGIT--TPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNEKLPPFPSDEPGGKDITFKRILLNH 139 (630)
Q Consensus 62 LTpenfd~l~~ql~~l~i~--~~e~L~~vi~lIfeKAi~Ep~fs~~YA~LC~~L~~~lp~~~~~e~~~~~~~Fr~~LL~~ 139 (630)
.+-++|+..+.+|+...+. +...|++||++||+||++||+||.|||+||.+|....+. +. +...||++||++
T Consensus 11 ~~i~~f~~~~q~ll~~~~~~~~~~~l~~vi~lIfeKAi~ep~fs~~YA~LC~~L~~~~~~----~~--g~~~Fr~~LLn~ 84 (224)
T 2i2o_A 11 YKIQSFDLETQKLLKTALKDPGSVDLEKVSSVIVDQSLKDQVFSREAGRICYTIVQAEAK----QT--NGSVFRRNLLNR 84 (224)
T ss_dssp CCCTTSCHHHHHHHHHHHHCGGGSCHHHHHHHHHHHHTTCHHHHHHTHHHHHHHHHHHHH----HH--SCCHHHHHHHHH
T ss_pred cchhccCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHccc----cc--cchHHHHHHHHH
Confidence 3445566666666554332 234689999999999999999999999999999887532 11 234699999999
Q ss_pred HHHHHhchhchHHHHhhcCChHHHHHHhhHHHHHHhhhhhHHHHHHHHHhc----CC--CC-HHHHHHHHHHHhhcCCCC
Q 006823 140 CQEAFEGADNTRAEIRQMTAPEQEMERMDQERLVKLRTLGNIRLIGELLKQ----KM--VP-EKIVHHIVQELLENDGKT 212 (630)
Q Consensus 140 cQ~eFe~~~~~~~e~~~~~~~e~e~e~~d~e~~~K~r~lGnirFIGELfk~----~~--l~-e~I~~~ci~~LL~~~~~~ 212 (630)
||++|++.. + .+++.|+|++|||+||||||++ +| ++ ++|||.||..||+.. .
T Consensus 85 cQ~eFe~~e----e---------------~~~~~k~r~lG~i~FIgELf~~l~~~~~~~~~l~~i~~~cl~~Ll~~~--~ 143 (224)
T 2i2o_A 85 LQQEFKARE----E---------------TRKRSTQEWVCLVSFICNIFDYLKVNNMPMVALVHPVYDCLFRLAQSD--A 143 (224)
T ss_dssp HHHHHHTHH----H---------------HHHHCHHHHHHHHHHHHHHHHHSCBTTBCCGGGHHHHHHHHHHHTSHH--H
T ss_pred HHHHHHChH----H---------------HHHHHHHHHhHHHHHHHHHHhHhcccCcchHHHHHHHHHHHHHHhccC--C
Confidence 999999852 1 1245689999999999999999 84 56 889999999999752 2
Q ss_pred CCChhhHHHHHHHHHHHhhhhhcCCcchhhHHHHHHHHHH-HhhCCCCChHHHHHHHHHHHHHhCCCCCccc
Q 006823 213 CPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKE-LTTNSQLVPRLRFMIHDVLDLRANNWVPRRE 283 (630)
Q Consensus 213 ~p~ee~IE~lc~LL~tiG~~Ld~~~k~~~~md~~f~rl~~-l~~~~~ls~Rirfmi~dlidLR~n~W~~r~~ 283 (630)
.|+|++|||+|+||+|||+.||+..+ ..||+||.+|+. +.++.++|+||||||+||||||++||++++.
T Consensus 144 ~p~Ee~lEcl~~LL~tvG~~Ld~~~~--~~md~~f~~l~~~l~~~~~ls~RiRfml~dlieLR~~~W~~~~~ 213 (224)
T 2i2o_A 144 LKNEEEVDCLVLQLHRIGDQLEKMNV--QLMDELFNLLRDGFLLQEDLSSMGRLLLLEILEFRAGGWKLSDT 213 (224)
T ss_dssp HTSHHHHHHHHHHHHHHHHHHHHHCH--HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHTTSCCCHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcccH--HHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHHHHHHCCCCCCch
Confidence 47999999999999999999997544 789999999999 7888899999999999999999999999875
No 5
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=100.00 E-value=2.7e-33 Score=267.60 Aligned_cols=156 Identities=21% Similarity=0.231 Sum_probs=139.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhCCCCCHH
Q 006823 457 VTKLNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTR 536 (630)
Q Consensus 457 ~~~~s~eel~kk~~~il~EY~~~~D~~Ea~~~i~eL~~p~~~~~~V~~~I~~ale~~~~~re~~~~LL~~L~~~~~ls~~ 536 (630)
+|.+|+||++++++++|+|||+++|++||+.||+||++|.|||+||+.+|++|||+++.+||++++||++|+. ++||++
T Consensus 1 ~p~~s~ee~~kk~~~ii~EYf~~~D~~Ea~~~l~eL~~p~~~~~~V~~~I~~aldrk~~ere~~s~LL~~L~~-~~ls~~ 79 (165)
T 2rg8_A 1 GLPLDERAFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTT 79 (165)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHTCSGGGGHHHHHHHHHHHTSCHHHHHHHHHHHHHHBT-TTBCHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-CCCCHH
Confidence 3678999999999999999999999999999999999999999999999999999999999999999999977 999999
Q ss_pred HHHHHHHHHhccchhhhcCCCchhHHHHHHHHHHHHcCCCCHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCchhH
Q 006823 537 DIGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTAAMKSIQSSPAGQEV 614 (630)
Q Consensus 537 ~~~~Gf~~vle~l~Dl~iDvP~A~~~la~~iarai~~~~l~~~~i~~~~~~~~~~~~~~~~l~~~l~~l~~~~~g~~v 614 (630)
||.+||..+++.|||++||+|+||++||+|+||+|.++++|+.||.+++.+.++. ..++++..|-..|+..-++..|
T Consensus 80 ~i~~Gf~~lle~ldDl~iDiP~a~~~la~fiarav~d~~l~~~~l~~~~~~~~~~-~~~~~l~~a~~ll~~~~~~~~~ 156 (165)
T 2rg8_A 80 DVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCV-QARAALDKATVLLSMSKGGKRK 156 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHTTSSCTTHHHHTTTTCCCH-HHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHhChhhcccccchHHHHHHHHHHHHHcCCCCHHHHHHHHhccCch-HHHHHHHHHHHHHhccccHHHH
Confidence 9999999999999999999999999999999999999999999999999986554 4445555566777766455444
No 6
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=99.98 E-value=8.6e-33 Score=260.55 Aligned_cols=138 Identities=23% Similarity=0.326 Sum_probs=122.7
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCC-CCChHHHHHHHHHHHhCCCCCHHHH
Q 006823 460 LNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKI-PPCVEPVIQLLEFLLNKNVLTTRDI 538 (630)
Q Consensus 460 ~s~eel~kk~~~il~EY~~~~D~~Ea~~~i~eL~~p~~~~~~V~~~I~~ale~~-~~~re~~~~LL~~L~~~~~ls~~~~ 538 (630)
.++|+++++++++|+|||+++|++||++||+||++|+|||+||+++|+++||++ +.+|+++++||.+|+.+++||++||
T Consensus 3 ~~~eel~kki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~ 82 (152)
T 2ion_A 3 QPVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 82 (152)
T ss_dssp CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 357899999999999999999999999999999999999999999999999996 7889999999999999999999999
Q ss_pred HHHHHHHhccchhhhcCCCchhHHHHHHHHHHHHcCCCCHHHHHHHHhhccchHHHHHHHHH
Q 006823 539 GTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTA 600 (630)
Q Consensus 539 ~~Gf~~vle~l~Dl~iDvP~A~~~la~~iarai~~~~l~~~~i~~~~~~~~~~~~~~~~l~~ 600 (630)
.+||.++++.||||+||+|+||++||+|+++||.+|+|+++|+..+ ..++ .+|++|+++
T Consensus 83 ~~Gf~~vl~~ldDl~lDiP~A~~~la~~v~~ai~~g~l~~~~~~~~--p~~~-~~rk~f~s~ 141 (152)
T 2ion_A 83 KRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLC--PSRS-RGRKRFVSE 141 (152)
T ss_dssp HHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTCSCHHHHHTC--TTC-----------
T ss_pred HHHHHHHHHhChHhccCccchHHHHHHHHHHHHHCCCCCHHHHHhC--CCcc-cchhhhccc
Confidence 9999999999999999999999999999999999999999999985 4455 999999876
No 7
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=99.97 E-value=9.7e-32 Score=246.95 Aligned_cols=124 Identities=25% Similarity=0.358 Sum_probs=119.7
Q ss_pred CHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCCC-CChHHHHHHHHHHHhCCCCCHHHHH
Q 006823 461 NLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIP-PCVEPVIQLLEFLLNKNVLTTRDIG 539 (630)
Q Consensus 461 s~eel~kk~~~il~EY~~~~D~~Ea~~~i~eL~~p~~~~~~V~~~I~~ale~~~-~~re~~~~LL~~L~~~~~ls~~~~~ 539 (630)
+.|+++++++++|+|||+++|++||++||+||++|+|||+||+++|+++||+++ .+|+++++||.+|+.+|+||++||.
T Consensus 2 p~eel~kki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~ 81 (129)
T 2nsz_A 2 PVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMK 81 (129)
T ss_dssp CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHH
Confidence 467999999999999999999999999999999999999999999999999985 8899999999999999999999999
Q ss_pred HHHHHHhccchhhhcCCCchhHHHHHHHHHHHHcCCCCHHHHHHH
Q 006823 540 TGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEV 584 (630)
Q Consensus 540 ~Gf~~vle~l~Dl~iDvP~A~~~la~~iarai~~~~l~~~~i~~~ 584 (630)
+||.++++.|+||++|+|+||++||+|+++||.+|+++++|+..+
T Consensus 82 ~Gf~~v~~~l~Dl~lDiP~a~~~l~~~v~~ai~~g~l~~~~~~~~ 126 (129)
T 2nsz_A 82 RGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLC 126 (129)
T ss_dssp HHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTCSCHHHHHTC
T ss_pred HHHHHHHhhChHhhcCccchHHHHHHHHHHHHHCCCCCHHHHhhC
Confidence 999999999999999999999999999999999999999998753
No 8
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=99.96 E-value=6e-29 Score=259.62 Aligned_cols=144 Identities=22% Similarity=0.300 Sum_probs=128.0
Q ss_pred CCCCC-CCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCC-CCChHHHHHHHHHHHh
Q 006823 452 KPSAP-VTKLNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKI-PPCVEPVIQLLEFLLN 529 (630)
Q Consensus 452 ~~~~~-~~~~s~eel~kk~~~il~EY~~~~D~~Ea~~~i~eL~~p~~~~~~V~~~I~~ale~~-~~~re~~~~LL~~L~~ 529 (630)
..|+. +..+++++++++++++|+|||+++|++||++||+||+.|+|||+||+.+|+++||++ +.+|+++++||++|++
T Consensus 151 ~~WG~~~~~~~~eelkkki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~ 230 (307)
T 2zu6_B 151 SVWGSGGGQQSVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWK 230 (307)
T ss_dssp CSSCCCSTTSCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHH
T ss_pred hhcCCCCCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHH
Confidence 35663 345799999999999999999999999999999999999999999999999999997 7789999999999999
Q ss_pred CCCCCHHHHHHHHHHHhccchhhhcCCCchhHHHHHHHHHHHHcCCCCHHHHHHHHhhccchHHHHHHHHH
Q 006823 530 KNVLTTRDIGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTA 600 (630)
Q Consensus 530 ~~~ls~~~~~~Gf~~vle~l~Dl~iDvP~A~~~la~~iarai~~~~l~~~~i~~~~~~~~~~~~~~~~l~~ 600 (630)
+|+||++||.+||.++++.|+|++||+|+||++||+|+++||.+|++++.++..+ +...|++|+++
T Consensus 231 ~~~ls~~q~~~Gf~~vl~~l~Dl~lDiP~A~~~la~~v~~ai~~g~l~~~~~~~~-----~~~~rkrf~se 296 (307)
T 2zu6_B 231 SSTITVDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLC-----PSRGRKRFVSE 296 (307)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHTSSCHHHHHTS-----CCC--------
T ss_pred CCCCCHHHHHHHHHHHHHhccHhhcccccHHHHHHHHHHHHHHCCCCCHHHHHhC-----Ccccccccccc
Confidence 9999999999999999999999999999999999999999999999999988765 57889999876
No 9
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=99.95 E-value=2.1e-29 Score=267.64 Aligned_cols=157 Identities=25% Similarity=0.329 Sum_probs=148.5
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhCCCCCHHH
Q 006823 458 TKLNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRD 537 (630)
Q Consensus 458 ~~~s~eel~kk~~~il~EY~~~~D~~Ea~~~i~eL~~p~~~~~~V~~~I~~ale~~~~~re~~~~LL~~L~~~~~ls~~~ 537 (630)
|.+|+||++++++++|+|||+++|++||++||+||++|+|||+||+.+|+++||+++.+|+++++||++|+++++||.+|
T Consensus 3 ~~~s~ee~~k~~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~ 82 (339)
T 1ug3_A 3 AALSEEELEKKSKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQ 82 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccchhhhcCCCchhHHHHHHHHHHHHcCCCCH-HHHHHHHhhccchHHHHHHHHHHHHHhhcCCCchhH
Q 006823 538 IGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDF-IVLKEVLKKVEDNMFRRSIFTAAMKSIQSSPAGQEV 614 (630)
Q Consensus 538 ~~~Gf~~vle~l~Dl~iDvP~A~~~la~~iarai~~~~l~~-~~i~~~~~~~~~~~~~~~~l~~~l~~l~~~~~g~~v 614 (630)
|.+||.++++.++||++|+|+||.+||+|+++++.+|++|+ .++..+++.+.++|.+..|+.++++.+....|-+++
T Consensus 83 ~~~Gf~~~~~~l~Dl~lDiP~a~~~La~~v~~~i~~g~l~~~~l~~~~~~~l~~~g~~~~fl~~vl~~l~~~~g~~~l 160 (339)
T 1ug3_A 83 YYQGLYEILELAEDMEIDIPHVWLYLAELVTPILQEGGVPMGELFREITKPLRPLGKAASLLLEILGLLCKSMGPKKV 160 (339)
T ss_dssp HHHHHHHHHHHHHHHTTTCTTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHHHHTCHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHhhChHhhcCccchHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHcCHHHH
Confidence 99999999999999999999999999999999999999999 777778888888999999999999999887444444
No 10
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=99.95 E-value=3.9e-28 Score=257.70 Aligned_cols=144 Identities=22% Similarity=0.293 Sum_probs=127.0
Q ss_pred CCCCCCCC-CCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCC-CCChHHHHHHHHHHHh
Q 006823 452 KPSAPVTK-LNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKI-PPCVEPVIQLLEFLLN 529 (630)
Q Consensus 452 ~~~~~~~~-~s~eel~kk~~~il~EY~~~~D~~Ea~~~i~eL~~p~~~~~~V~~~I~~ale~~-~~~re~~~~LL~~L~~ 529 (630)
..|+.+.. .++++++++++++|+|||+++|++||++||+||++|+|||+||+.+|+++||++ +.+|+++++||.+|+.
T Consensus 202 ~~WG~g~~~~~veelkkki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~ 281 (358)
T 3eiq_C 202 SVWGSGGGQQPVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWK 281 (358)
T ss_dssp -CCCCCCSSSCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCCccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHH
Confidence 45765544 489999999999999999999999999999999999999999999999999997 6789999999999999
Q ss_pred CCCCCHHHHHHHHHHHhccchhhhcCCCchhHHHHHHHHHHHHcCCCCHHHHHHHHhhccchHHHHHHHHH
Q 006823 530 KNVLTTRDIGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTA 600 (630)
Q Consensus 530 ~~~ls~~~~~~Gf~~vle~l~Dl~iDvP~A~~~la~~iarai~~~~l~~~~i~~~~~~~~~~~~~~~~l~~ 600 (630)
+|+||.+||.+||.++++.|+||+||||+||++||+|+++||.+|+|++.|+... +++.|++|+++
T Consensus 282 ~glls~~q~~~Gf~~vl~~ldDl~lDiP~A~~~la~~varai~~g~l~~~f~~~~-----p~r~rkr~~se 347 (358)
T 3eiq_C 282 SSTITIDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLC-----PSRGRKRFVSE 347 (358)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHTSSCHHHHTTC-----CCC--------
T ss_pred CCCCCHHHHHHHHHHHHHhccHhhcccccHHHHHHHHHHHHHHCCCCCHHHHHhC-----cccCCcccccc
Confidence 9999999999999999999999999999999999999999999999999987644 67889999765
No 11
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=99.95 E-value=1.9e-28 Score=260.08 Aligned_cols=149 Identities=21% Similarity=0.249 Sum_probs=133.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhCCCCCHH
Q 006823 457 VTKLNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTR 536 (630)
Q Consensus 457 ~~~~s~eel~kk~~~il~EY~~~~D~~Ea~~~i~eL~~p~~~~~~V~~~I~~ale~~~~~re~~~~LL~~L~~~~~ls~~ 536 (630)
.|.+|++|++|++++||+|||+++|++||+.||+||++|.||+.||+.+|++||||++.+||++++||++|+. +++|++
T Consensus 45 ~p~ls~ee~~k~~~~ii~EYf~~~d~~Ea~~~l~eL~~p~~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~~-~~ls~~ 123 (358)
T 3eiq_C 45 VLPLDETAFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTN 123 (358)
T ss_dssp -----CHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTTCCGGGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTTT-TSCCHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHh-CCCCHH
Confidence 3568899999999999999999999999999999999999999999999999999999999999999999995 999999
Q ss_pred HHHHHHHHHhccchhhhcCCCchhHHHHHHHHHHHHcCCCCHHHHHHHHhhccchHHHHHHHHHHHHHhhc
Q 006823 537 DIGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTAAMKSIQS 607 (630)
Q Consensus 537 ~~~~Gf~~vle~l~Dl~iDvP~A~~~la~~iarai~~~~l~~~~i~~~~~~~~~~~~~~~~l~~~l~~l~~ 607 (630)
||.+||..+++.++|+++|+|+||+|||.|+||||.|+++++.||.++...+.+ .....+|..|-..|+.
T Consensus 124 ~i~~gf~~lle~ldDl~lDiP~a~~~la~flaRaV~d~~l~~~~l~~~~~~~~~-~~~~~~l~~a~~~L~~ 193 (358)
T 3eiq_C 124 DVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDC-VQARAALDKATVLLSM 193 (358)
T ss_dssp HHHHHHHHHHHTHHHHHHHCTTHHHHHHHHHHHHHHTTCSCSSTTGGGC---CC-HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhhhhhccccccHHHHHHHHHHHHHHhCCCCHHHHHHHhhcccc-hHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999887555543 5667778888777765
No 12
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=99.94 E-value=4.3e-28 Score=253.18 Aligned_cols=144 Identities=22% Similarity=0.247 Sum_probs=135.3
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 006823 464 DLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRDIGTGCL 543 (630)
Q Consensus 464 el~kk~~~il~EY~~~~D~~Ea~~~i~eL~~p~~~~~~V~~~I~~ale~~~~~re~~~~LL~~L~~~~~ls~~~~~~Gf~ 543 (630)
|++|+++++|+|||+++|++||+.||+||++|.|||.||+.+|++|||+++.+||++++||++|+. +++|++||.+||.
T Consensus 1 e~~k~~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~ 79 (307)
T 2zu6_B 1 AFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTDVEKSFD 79 (307)
T ss_dssp CHHHHHHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH-HTBCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh-CCCCHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999999999999999999996 9999999999999
Q ss_pred HHhccchhhhcCCCchhHHHHHHHHHHHHcCCCCHHHHHHHHhhccchHHHHHHHHHHHHHhhcCC
Q 006823 544 LYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTAAMKSIQSSP 609 (630)
Q Consensus 544 ~vle~l~Dl~iDvP~A~~~la~~iarai~~~~l~~~~i~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 609 (630)
.+++.+||+++|+|+||++||.|+||||.||++|+.|+.++..+..+ ...++++..|...|+...
T Consensus 80 ~ll~~ldDl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~~~~~~-~~g~~~l~~a~~~l~~~~ 144 (307)
T 2zu6_B 80 KLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDC-VQARAALDKATVLLSMSK 144 (307)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTTTCCC-HHHHHHHHHHHHHHHTCC
T ss_pred HHHHhhhHhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHHhcccc-hHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999998887655 456678888888887654
No 13
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=99.94 E-value=5.4e-27 Score=250.69 Aligned_cols=154 Identities=18% Similarity=0.288 Sum_probs=140.9
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCC-ChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhCCCCCHHH
Q 006823 459 KLNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPT-YHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRD 537 (630)
Q Consensus 459 ~~s~eel~kk~~~il~EY~~~~D~~Ea~~~i~eL~~p~-~~~~~V~~~I~~ale~~~~~re~~~~LL~~L~~~~~ls~~~ 537 (630)
.-+.||+.|+++++|+|||+++|++||++||+||++|. |||+||+.+|+++||+++.+||++++||++|+.+++||.+|
T Consensus 5 ~~~~~~~~k~~~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~ 84 (364)
T 3l6a_A 5 HHSKEELLKLTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDN 84 (364)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHH
T ss_pred cccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHH
Confidence 35789999999999999999999999999999999994 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccchhhhcCCCchhHHHHHHHHHHHHcCCCCHHHHHHHHhhccchHHHHHHHHHHHHHhhcCCCchhHHH
Q 006823 538 IGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTAAMKSIQSSPAGQEVLA 616 (630)
Q Consensus 538 ~~~Gf~~vle~l~Dl~iDvP~A~~~la~~iarai~~~~l~~~~i~~~~~~~~~~~~~~~~l~~~l~~l~~~~~g~~v~~ 616 (630)
|.+||.++++.++|+++|+|+||.|||+|+||+|.+|++++.++...+.. |....++..+++.+....|.+||..
T Consensus 85 ~~~Gf~~lle~l~Dl~iDiP~a~~~la~f~ar~i~~~~l~~~~l~~~l~~----G~~~~l~l~vl~~~~k~~G~~~l~~ 159 (364)
T 3l6a_A 85 FMQAFLNVLDQCPKLEVDIPLVKSYLAQFAARAIISELVSISELAQPLES----GTHFPLFLLCLQQLAKLQDREWLTE 159 (364)
T ss_dssp HHHHHHHHHHTHHHHHHHCTTHHHHHHHHHHHHHHTTSSCHHHHHHHHGG----GTTTTHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHhhChHhccccccHHHHHHHHHHHHHHcCCCCHHHHHHHhcc----cchHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999999999999999999999999999999999999999988765 3334577788888888755555543
No 14
>1uw4_B UPF2, regulator of nonsense transcripts 2; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: a.118.1.14
Probab=99.73 E-value=1.5e-16 Score=159.89 Aligned_cols=217 Identities=16% Similarity=0.231 Sum_probs=158.4
Q ss_pred HHHHHHHh-hcCChhhHHHHHHHHHHccCCChHHHHHHHHHHHHHHhcCCCchHHH--HHHHHHHhhhCCCCCCCCCCCc
Q 006823 52 LKTVKGIL-NKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMY--ALLCSDLNEKLPPFPSDEPGGK 128 (630)
Q Consensus 52 ~r~vk~iL-NKLTpenfd~l~~ql~~l~i~~~e~L~~vi~lIfeKAi~Ep~fs~~Y--A~LC~~L~~~lp~~~~~e~~~~ 128 (630)
...||.+| -.|+..+.+.++++|..+...+++..+.+++. |-|+ ..-+|..++ |.|...|....|
T Consensus 5 ~~fir~Li~~~L~~~~~~~vlk~lrKl~W~D~e~~~~l~k~-l~~~-~~~ky~nI~~lA~ll~~L~~~~~---------- 72 (248)
T 1uw4_B 5 QEYVRKLLYKDLSKVTTEKVLRQMRKLPWQDQEVKDYVICC-MINI-WNVKYNSIHCVANLLAGLVLYQE---------- 72 (248)
T ss_dssp HHHHHHHHHTTCSTTSHHHHHHHHHTSCTTSHHHHHHHHHH-HHCG-GGSCGGGHHHHHHHHHHHTTTCH----------
T ss_pred HHHHHHHHHHHcccccHHHHHHHHHcCCCCcHHHHHHHHHH-hcch-hhcccchHHHHHHHHHHHHhhCh----------
Confidence 34556655 67778899999999999999888766555544 4444 234665554 788888876533
Q ss_pred hhhHHHHHHHHHHHHHhchhchHHHHhhcCChHHHHHHhhHHHHHHhhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHhhc
Q 006823 129 DITFKRILLNHCQEAFEGADNTRAEIRQMTAPEQEMERMDQERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLEN 208 (630)
Q Consensus 129 ~~~Fr~~LL~~cQ~eFe~~~~~~~e~~~~~~~e~e~e~~d~e~~~K~r~lGnirFIGELfk~~~l~e~I~~~ci~~LL~~ 208 (630)
.|--.++...-|+...+ +|..+ .+.++|.+++|+||||||+.+|++..+|++|+..|+.-
T Consensus 73 --~~~i~vVD~vlE~Ir~g----------------LE~n~--~~~nQrRia~vkyLgELYny~lv~s~vIf~~Ly~li~f 132 (248)
T 1uw4_B 73 --DVGIHVVDGVLEDIRLG----------------MEVNQ--PKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSF 132 (248)
T ss_dssp --HHHHHHHHHHHHHHHHH----------------HHHCC--GGGHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHT
T ss_pred --HHhhhhHHHHHHHHHHH----------------HhcCc--HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHcC
Confidence 34444555444443332 22222 23456789999999999999999999999999999973
Q ss_pred CC--CCCCChhh-------HHHHHHHHHHHhhhhhcCCcchhhHHHHHHHHHHHh----------hCCCCChHHHHHHHH
Q 006823 209 DG--KTCPAEEN-------VEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELT----------TNSQLVPRLRFMIHD 269 (630)
Q Consensus 209 ~~--~~~p~ee~-------IE~lc~LL~tiG~~Ld~~~k~~~~md~~f~rl~~l~----------~~~~ls~Rirfmi~d 269 (630)
.. ...+++.+ |+++|.||.|||+.++. ...+..||.|+..++... ++..+|.+|+||++|
T Consensus 133 g~~~~~~~~~~D~p~d~FRIrLvCtLL~tcg~~f~~-~~~~kkLd~fL~ffQ~Y~~~K~~~~~~~k~~plP~~vef~l~D 211 (248)
T 1uw4_B 133 GVNPDGSPSSLDPPEHLFRIRLVCTILDTCGQYFDR-GSSKRKLDCFLVYFQRYVWWKKSLEVWTKDHPFPIDIDYMISD 211 (248)
T ss_dssp TCCTTSCCCSSSCTTCCHHHHHHHHHHHHHGGGCSS-HHHHHHHHHHHHHHHHHHHHHHTSTTCCSSSCCCHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCccchhHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHhhcccccccccCCCCCHHHHHHHHH
Confidence 11 11235555 99999999999999996 345567999999998873 345799999999999
Q ss_pred HHHH-HhCCCCCcccccCCCcHHHHHHHHHHHc
Q 006823 270 VLDL-RANNWVPRREEMKAKTITEIHSEAEKNL 301 (630)
Q Consensus 270 lidL-R~n~W~~r~~~~~pkti~ei~~ea~~~~ 301 (630)
++++ |.+-|..+.-++.++.+++|.++....+
T Consensus 212 ~~~~lrp~~~~~~~~eEa~~~v~~le~~~~~~~ 244 (248)
T 1uw4_B 212 TLELLRPKIKLCNSLEESIRQVQDLEREFLIKL 244 (248)
T ss_dssp HHHHHCTTCCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccCcccCCHHHHHHHHHHHHHHHHHHh
Confidence 9999 8888888887777888888877654443
No 15
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=98.83 E-value=5.9e-08 Score=112.62 Aligned_cols=197 Identities=15% Similarity=0.236 Sum_probs=147.3
Q ss_pred ChHHHHHHHHHHHhhcCCh-------hhHHHHHHHHHHccCCChHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhCC
Q 006823 46 SEKDRVLKTVKGILNKLTP-------EKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNEKLP 118 (630)
Q Consensus 46 ~~~e~l~r~vk~iLNKLTp-------enfd~l~~ql~~l~i~~~e~L~~vi~lIfeKAi~Ep~fs~~YA~LC~~L~~~lp 118 (630)
++.+.+..++++++-+|+. ++++.|+..|.+ ++ ...-..+++.|+.-++..|.++.+||.|...|+...|
T Consensus 3 ~~~~~~~~~l~~lI~rlge~~~~s~~~~l~~L~~~l~~-~l--~~~r~~i~~~l~~~~~~~P~Kt~vyAaLVgllN~k~p 79 (771)
T 1h2v_C 3 SDANETEDHLESLICKVGEKSACSLESNLEGLAGVLEA-DL--PNYKSKILRLLCTVARLLPEKLTIYTTLVGLLNARNY 79 (771)
T ss_dssp -------CHHHHHHHTTTSSCSSCHHHHHHHHHHHHHH-TH--HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCH
T ss_pred CCcccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHH-HH--HhhHHHHHHHHHHHHHhCCCcchHHHHHHHHHHcCCh
Confidence 4567788999999999997 566666666542 11 2234447889999999999999999999999998743
Q ss_pred CCCCCCCCCchhhHHHHHHHHHHHHHhchhchHHHHhhcCChHHHHHHhhHHHHHHhhhhhHHHHHHHHHhcCCCCHHHH
Q 006823 119 PFPSDEPGGKDITFKRILLNHCQEAFEGADNTRAEIRQMTAPEQEMERMDQERLVKLRTLGNIRLIGELLKQKMVPEKIV 198 (630)
Q Consensus 119 ~~~~~e~~~~~~~Fr~~LL~~cQ~eFe~~~~~~~e~~~~~~~e~e~e~~d~e~~~K~r~lGnirFIGELfk~~~l~e~I~ 198 (630)
.|...++.++...|....+ ..+ ++++...++|||+|++.+++++..+
T Consensus 80 ------------e~G~~lv~~l~~~f~~~l~----------------~~~-----~~~~k~~lrFLa~L~n~~Vv~~~~i 126 (771)
T 1h2v_C 80 ------------NFGGEFVEAMIRQLKESLK----------------ANN-----YNEAVYLVRFLSDLVNCHVIAAPSM 126 (771)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHH----------------TTC-----HHHHHHHHHHHHHHHHTTSBCHHHH
T ss_pred ------------hHHHHHHHHHHHHHHHHHH----------------ccC-----hHHHHHHHHHHHHhccCCeecHHHH
Confidence 5788888888888876521 111 2467789999999999999999999
Q ss_pred HHHHHHHhhcCC-CCCCC---hhhHHHHHHHHHHHhhhhhcCCcchhhHHHHHHHHHHHhhCC-C---------------
Q 006823 199 HHIVQELLENDG-KTCPA---EENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTNS-Q--------------- 258 (630)
Q Consensus 199 ~~ci~~LL~~~~-~~~p~---ee~IE~lc~LL~tiG~~Ld~~~k~~~~md~~f~rl~~l~~~~-~--------------- 258 (630)
..++..|+.... ...|. ++.+.|++..|..||+.|-+. .+..++.+|++++.+...+ +
T Consensus 127 l~lL~~Ll~~~~e~~~~q~r~D~~v~~vL~~Lp~~G~~L~e~--~~~~l~~lle~~~~yl~~r~~~~~~ll~~~~~~~~~ 204 (771)
T 1h2v_C 127 VAMFENFVSVTQEEDVPQVRRDWYVYAFLSSLPWVGKELYEK--KDAEMDRIFANTESYLKRRQKTHVPMLQVWTADKPH 204 (771)
T ss_dssp HHHHHHHHHGGGCSSCCHHHHHHHHHHHHTTHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTCCCTTHHHHCSBCCCSSC
T ss_pred HHHHHHHHHhhhhcCCcccchhHHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHhcCccchhhhhccccCCCC
Confidence 999999998531 11222 567899999999999999753 3357899999999865332 2
Q ss_pred -CChHHHHHHHHHHHHHhCCCCC
Q 006823 259 -LVPRLRFMIHDVLDLRANNWVP 280 (630)
Q Consensus 259 -ls~Rirfmi~dlidLR~n~W~~ 280 (630)
...|+.+|+..|..+|+++|..
T Consensus 205 ~~~~~l~~L~~ql~~lr~~~w~~ 227 (771)
T 1h2v_C 205 PQEEYLDCLWAQIQKLKKDRWQE 227 (771)
T ss_dssp CCCBHHHHHHHHHHHHHHTTTCC
T ss_pred chhhHHHHHHHHHHHHHHCCCCC
Confidence 1479999999999999999974
No 16
>4gmj_A CCR4-NOT transcription complex subunit 1; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens} PDB: 4gml_A
Probab=95.56 E-value=0.25 Score=48.76 Aligned_cols=190 Identities=18% Similarity=0.282 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHHHHHHccCCChHHHHHHH-HHHHHHHhcCCCchHHHHHHHHHHhhhCCCCCCCCCC
Q 006823 48 KDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVI-ELIFDKAVLEPTFCPMYALLCSDLNEKLPPFPSDEPG 126 (630)
Q Consensus 48 ~e~l~r~vk~iLNKLTpenfd~l~~ql~~l~i~~~e~L~~vi-~lIfeKAi~Ep~fs~~YA~LC~~L~~~lp~~~~~e~~ 126 (630)
+|.+..+|-.|+|.||++|++.-++++-++ + +++-..=++ =+|.++|-.||+|-.+|++|...|...
T Consensus 4 de~v~dki~Fi~NNls~~N~~~k~~elk~~-l-~~~y~~Wfa~YLV~~Ras~EpN~h~lY~~fl~~l~~~---------- 71 (229)
T 4gmj_A 4 EENIQEKIAFIFNNLSQSNMTQKVEELKET-V-KEEFMPWVSQYLVMKRVSIEPNFHSLYSNFLDTLKNP---------- 71 (229)
T ss_dssp CHHHHHHHHHHHHSCCSSTHHHHHHHHHHH-S-CGGGHHHHHHHHHHHTTTTCGGGHHHHHHHHHHHTCH----------
T ss_pred cHHhhhhheeehhcCCHHHHHHHHHHHHHH-H-hHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHhChH----------
Confidence 367899999999999999999999999874 2 233333344 346778888999999999999988532
Q ss_pred CchhhHHHHHHHHHHHHHhchhchHHHHhh-cCChHHHHHHhhHHHHHHhhhhhHHHHHHHHHhcC--CCCHHHHHHHHH
Q 006823 127 GKDITFKRILLNHCQEAFEGADNTRAEIRQ-MTAPEQEMERMDQERLVKLRTLGNIRLIGELLKQK--MVPEKIVHHIVQ 203 (630)
Q Consensus 127 ~~~~~Fr~~LL~~cQ~eFe~~~~~~~e~~~-~~~~e~e~e~~d~e~~~K~r~lGnirFIGELfk~~--~l~e~I~~~ci~ 203 (630)
.+.+.+++. .|.....+ +.. .+.... .|+ ... +-+| .++|-|-.-. -|..+ +-.++
T Consensus 72 ----~l~~~vl~~---T~~~i~~L---L~s~~~~~~~-~eR----~~L--KNLG--~WLG~lTLarnkPI~~~--~l~~K 130 (229)
T 4gmj_A 72 ----EFNKMVLNE---TYRNIKVL---LTSDKAAANF-SDR----SLL--KNLG--HWLGMITLAKNKPILHT--DLDVK 130 (229)
T ss_dssp ----HHHHHHHHH---HHHHHHHH---HTSCCCTTCH-HHH----HHH--HHHH--HHHHHHTGGGTCCCCTT--TCCHH
T ss_pred ----HHHHHHHHH---HHHHHHHH---Hhhcccccch-HHH----HHH--HHHH--HHHHHHHHccCCCchhc--ccCHH
Confidence 234444442 22222110 000 000000 011 112 2244 5677765432 11111 11234
Q ss_pred HHhhc-CCCCC-CChhhHHHHHHHHHHHhh--hhhcCCcchhhHHHHHHHHHHHhhCCCCChHHHHHHHHHHHH
Q 006823 204 ELLEN-DGKTC-PAEENVEAICQFFNTIGK--QLDENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDL 273 (630)
Q Consensus 204 ~LL~~-~~~~~-p~ee~IE~lc~LL~tiG~--~Ld~~~k~~~~md~~f~rl~~l~~~~~ls~Rirfmi~dlidL 273 (630)
.||-. ...+. .-.--|-.+|++|..|-+ .+- +.. .++-.++.-|.++.....+.--++|=|+-++.-
T Consensus 131 ~LL~eay~~g~~rL~~viPFVcKvLe~~~~S~iFk--PPN-PW~~~IL~lL~Ely~~~~lKlnlkFEIEvLfk~ 201 (229)
T 4gmj_A 131 SLLLEAYVKGQQELLYVVPFVAKVLESSIRSVVFR--PPN-PWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKN 201 (229)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHTTTTCTTTS--TTC-HHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCceEEEeehhHHHHHHhcccCCcCC--CCC-hhHHHHHHHHHHHHhCccchhhHHHHHHHHHHH
Confidence 44422 00000 000124556666666632 222 222 466788899999988888888999998888754
No 17
>4b89_A General negative regulator of transcription subun; 1.50A {Saccharomyces cerevisiae S288C} PDB: 4b8a_A 4b8c_B
Probab=95.05 E-value=0.15 Score=50.79 Aligned_cols=191 Identities=15% Similarity=0.213 Sum_probs=112.7
Q ss_pred ChHHHHHHHHHHHhhcCChhhHHHHHHHHHHccCCChHHHHHHHHH-HHHHHhcCCCchHHHHHHHHHHhhhCCCCCCCC
Q 006823 46 SEKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIEL-IFDKAVLEPTFCPMYALLCSDLNEKLPPFPSDE 124 (630)
Q Consensus 46 ~~~e~l~r~vk~iLNKLTpenfd~l~~ql~~l~i~~~e~L~~vi~l-IfeKAi~Ep~fs~~YA~LC~~L~~~lp~~~~~e 124 (630)
...+.+..+|-.|+|.||++|++.=+.++.++ + +++-..=++.- |.++|..||+|-.+|.+|+..+...
T Consensus 29 ~P~~~v~dki~Fi~NNls~~Nl~~k~~el~~~-l-~~~y~~WFA~YLV~~Ra~~EpN~H~lY~~~l~~l~~~-------- 98 (249)
T 4b89_A 29 GAPKDVVEKVLFVLNNVTLANLNNKVDELKKS-L-TPNYFSWFSTYLVTQRAKTEPNYHDLYSKVIVAMGSG-------- 98 (249)
T ss_dssp CCCHHHHHHHHHHHHHCCTTTHHHHHHHHHHH-C-CGGGHHHHHHHHHHHTTTTCGGGHHHHHHHHHHHTCH--------
T ss_pred CcCHHHHhhhhhhhhcCChHHHHHHHHHHHHH-H-HHHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHhCCH--------
Confidence 35688999999999999999999999999884 2 34445445544 6779999999999999999998642
Q ss_pred CCCchhhHHHHHHHHHHHHHhchhchHHHHhhcCChHHHHHHhhHHHHHHhhhhhHHHHHHHHHhcC---CCCHHHHHHH
Q 006823 125 PGGKDITFKRILLNHCQEAFEGADNTRAEIRQMTAPEQEMERMDQERLVKLRTLGNIRLIGELLKQK---MVPEKIVHHI 201 (630)
Q Consensus 125 ~~~~~~~Fr~~LL~~cQ~eFe~~~~~~~e~~~~~~~e~e~e~~d~e~~~K~r~lGnirFIGELfk~~---~l~e~I~~~c 201 (630)
.+-+.+++.. |.....+ +. ... ....|. ... +-+| .++|-|-.-. +++..+ .
T Consensus 99 ------~L~~~vl~~T---~~~i~~L---L~-~~~----i~~~eR-s~L--KNLG--~WLG~iTLarNkPI~~~~l---d 153 (249)
T 4b89_A 99 ------LLHQFMVNVT---LRQLFVL---LS-TKD----EQAIDK-KHL--KNLA--SWLGCITLALNKPIKHKNI---A 153 (249)
T ss_dssp ------HHHHHHHHHH---HHHHHHH---HT-BSC----GGGSCH-HHH--HHHH--HHHHHHTGGGTCCCCTTTB---C
T ss_pred ------HHHHHHHHHH---HHHHHHH---hh-hcc----cChHHH-HHH--HHHH--HHHhHHHHhcCCCchhccc---C
Confidence 2233333321 1111000 00 000 001111 111 2244 5677765432 111111 2
Q ss_pred HHHHhhc-CCCCCCChhhHHHHHHHHHHHhhh-hhcCCcchhhHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHH
Q 006823 202 VQELLEN-DGKTCPAEENVEAICQFFNTIGKQ-LDENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLR 274 (630)
Q Consensus 202 i~~LL~~-~~~~~p~ee~IE~lc~LL~tiG~~-Ld~~~k~~~~md~~f~rl~~l~~~~~ls~Rirfmi~dlidLR 274 (630)
++.||-. .... .-+--|-.+|++|..|-.. .-. +.. .++-.++.-|.++...+.+..-++|-|+-++.-=
T Consensus 154 ~K~LL~eay~~g-~L~~vIPFVcKvLe~~k~SkiFk-PPN-PWt~~IL~lL~Ely~~~~LKlnlkFEIEvL~k~l 225 (249)
T 4b89_A 154 FREMLIEAYKEN-RLEIVVPFVTKILQRASESKIFK-PPN-PWTVGILKLLIELNEKANWKLSLTFEVEVLLKSF 225 (249)
T ss_dssp HHHHHHHHHHHT-CHHHHHHHHHHHHGGGTTCSSSS-TTC-HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcC-CeEEEeeHHHHHHHhcccCCccC-CCC-chHHHHHHHHHHHHhCcchhHhHHHHHHHHHHHc
Confidence 3444422 1000 0123566677777776422 111 222 4667888999999888888999999999887643
No 18
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=78.86 E-value=44 Score=36.39 Aligned_cols=160 Identities=23% Similarity=0.294 Sum_probs=101.3
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHHccC-CChHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHhhhCCCCCCCC
Q 006823 50 RVLKTVKGILNKLTPEKFDVLKGQLIDSGI-TTPDILKGVIELIFDKAVLEPTF----CPMYALLCSDLNEKLPPFPSDE 124 (630)
Q Consensus 50 ~l~r~vk~iLNKLTpenfd~l~~ql~~l~i-~~~e~L~~vi~lIfeKAi~Ep~f----s~~YA~LC~~L~~~lp~~~~~e 124 (630)
-+...++.+|-.+|-+.|..++.=|-.+.+ .+....+.++.+|.++|=-+..| .....++...+.+.+|-|..
T Consensus 177 ~i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~-- 254 (507)
T 3u0r_A 177 LILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSK-- 254 (507)
T ss_dssp HHHHHHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBT--
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhcc--
Confidence 467788899999999999999855555554 56777889999999998554444 46788999999888886642
Q ss_pred CCCchhhHHHHHHHHHHHHHhchhchHHHHhhcCChHHHHHHhhHHHHHHhhhhhHHHHHHHHHhcCC-CC--HHHHHHH
Q 006823 125 PGGKDITFKRILLNHCQEAFEGADNTRAEIRQMTAPEQEMERMDQERLVKLRTLGNIRLIGELLKQKM-VP--EKIVHHI 201 (630)
Q Consensus 125 ~~~~~~~Fr~~LL~~cQ~eFe~~~~~~~e~~~~~~~e~e~e~~d~e~~~K~r~lGnirFIGELfk~~~-l~--e~I~~~c 201 (630)
+...+.|-.++..+ -|-.. ..+++.+++. + +.+-..+.++|+--+-- +. ...+-.+
T Consensus 255 -~v~StkFv~y~~~k---IlP~l-------~~L~e~~~~~---~-------~kL~LLK~lAE~s~~~~~~e~a~~~l~~i 313 (507)
T 3u0r_A 255 -NVHSTRFVTYFCEQ---VLPNL-------GTLTTPVEGL---D-------IQLEVLKLLAEMSSFCGDMEKLETNLRKL 313 (507)
T ss_dssp -TBCCHHHHHHHHHH---TGGGT-------TCCCCC--CC---C-------HHHHHHHHHHHHHTTCCCCTTHHHHHHHH
T ss_pred -CCChHHHHHHHHHh---hccch-------hhccccccch---H-------HHHHHHHHHHHHccCCCccchHHHHHHHH
Confidence 33345666666543 23221 2233222111 1 12567888999987633 43 2244444
Q ss_pred HHHHhhcCCCCCCCh----------------hhHHHHHHHHHHHhhhh
Q 006823 202 VQELLENDGKTCPAE----------------ENVEAICQFFNTIGKQL 233 (630)
Q Consensus 202 i~~LL~~~~~~~p~e----------------e~IE~lc~LL~tiG~~L 233 (630)
...|+.... ..|.+ -.||||.-.+.+.|++.
T Consensus 314 y~~L~~ymP-~~p~~~~~~~~~~~~~p~l~fS~vECLLy~fH~L~~k~ 360 (507)
T 3u0r_A 314 FDKLLEYMP-LPPEEAENGENAGNEEPKLQFSYVECLLYSFHQLGRKL 360 (507)
T ss_dssp HHHHHTTSC-CCC--------------CCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCC-CCcccccccccccccCcccchhHHHHHHHHHHHHhhhC
Confidence 444444321 12221 15899999999999874
No 19
>3pev_B Nucleoporin GLE1; RECA, heat, DEAD-BOX, ATPase, helicase, mRNA export, nuclear hydrolase; HET: IHP; 2.50A {Saccharomyces cerevisiae} PDB: 3peu_B* 3pex_B* 3pez_B* 3rrm_B* 3rrn_B*
Probab=75.47 E-value=74 Score=32.33 Aligned_cols=170 Identities=12% Similarity=0.154 Sum_probs=97.1
Q ss_pred HHHHHHHHHhhcCC--hhhHHHHHHHHHHc-cC--CChH----HHHHHHHHHHHHHh----cCCCchHHHHHHHHHHhhh
Q 006823 50 RVLKTVKGILNKLT--PEKFDVLKGQLIDS-GI--TTPD----ILKGVIELIFDKAV----LEPTFCPMYALLCSDLNEK 116 (630)
Q Consensus 50 ~l~r~vk~iLNKLT--penfd~l~~ql~~l-~i--~~~e----~L~~vi~lIfeKAi----~Ep~fs~~YA~LC~~L~~~ 116 (630)
...|+|+-.+|+|| .+.+..++.+|.++ .- .+.. .|..+++.|...|- ..|..+.-||.++..|...
T Consensus 43 ~~kR~I~~~igQLt~s~~qi~~i~~~L~~ll~~~~~~~~~~~~~ln~lAK~iV~Q~e~ev~~~p~sA~PlA~v~~~l~~~ 122 (297)
T 3pev_B 43 RHKRKINPKFGQLTNSNQQLFKIQNELTQLINDTKGDSLAYHWILNFIAKAVVHQAETEVRVKPESALPLGKLTLYLLVQ 122 (297)
T ss_dssp HHHHHHTTHHHHCCSBHHHHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHhhhccchhccccCCHHHHHHHHHHHHHHHhCccCCchHHHHHHHHHHHHHHHHHHHHhccCCcccchHHHHHHHHHHh
Confidence 47899999999998 56788888888774 11 1121 34444555555443 3588899999999999887
Q ss_pred CCCCCCCCCCCchhhHHHHHHHHHHHHH--hchh--c-hHHHH-hhcC---ChHHHHHHhhHHHHHHhhhhhHHHHHHHH
Q 006823 117 LPPFPSDEPGGKDITFKRILLNHCQEAF--EGAD--N-TRAEI-RQMT---APEQEMERMDQERLVKLRTLGNIRLIGEL 187 (630)
Q Consensus 117 lp~~~~~e~~~~~~~Fr~~LL~~cQ~eF--e~~~--~-~~~e~-~~~~---~~e~e~e~~d~e~~~K~r~lGnirFIGEL 187 (630)
+|+ |..+|+.+..+.- --.. . ..++. ..+- ..+...| .+...-.|+-|.+++-+-+
T Consensus 123 ~p~------------~~dillA~l~k~CP~~vp~~~~~~teegr~~mG~~~~~dg~~E---~~~~y~~Rm~Gi~~lyAAI 187 (297)
T 3pev_B 123 FPE------------LQELFMARLVKKCPFVIGFTCEIDTEKGRQNMGWKRNNENKWE---DNTSYDERMGGILSLFAII 187 (297)
T ss_dssp STT------------HHHHHHHHHHHHCGGGGTCCCCCSSHHHHHHTTCCBCTTSCBC---CHHHHHHHHHHHHHHHHHH
T ss_pred Ccc------------HHHHHHHHHhhcCCcccccCCCcccHHHHHHcCCeeCCCCCcc---cHHHHHHHHHHHHHHHHHH
Confidence 653 4555555443321 0000 0 01111 1110 0010011 1122345899999999999
Q ss_pred HhcCC-----------CCHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHhhhhhc
Q 006823 188 LKQKM-----------VPEKIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDE 235 (630)
Q Consensus 188 fk~~~-----------l~e~I~~~ci~~LL~~~~~~~p~ee~IE~lc~LL~tiG~~Ld~ 235 (630)
..... .+-.-.=..+..+|+... ...+.-...+|..+|+.+|..|-+
T Consensus 188 ~~~~~~~~~~~~~~~p~~~~~~W~wLArilN~~p-~~~t~t~~~vL~~~Le~ag~~l~~ 245 (297)
T 3pev_B 188 TRLQLPQEFITTTSHPFPIALSWHILARICNTPL-NLITNTHFVILGSWWDAAAVQFLQ 245 (297)
T ss_dssp HHSCCCTTTTTTSCCSSCTHHHHHHHHHHHTSCG-GGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCcCcccccccCCCCCCchHHHHHHHHHhCCCH-HhhcccHHHHHHHHHHHHHHHHHH
Confidence 86641 222334455666776521 001222345888999999999875
No 20
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=56.27 E-value=38 Score=36.78 Aligned_cols=68 Identities=12% Similarity=0.091 Sum_probs=45.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCCCCh-HHHHHHHHHHHhcCCC--------CChHHHHHHHHHHHhCCCCCHH
Q 006823 469 TVSLLEEYFSIRILDEALQCVEELRAPTYH-PEVVKEAIALALEKIP--------PCVEPVIQLLEFLLNKNVLTTR 536 (630)
Q Consensus 469 ~~~il~EY~~~~D~~Ea~~~i~eL~~p~~~-~~~V~~~I~~ale~~~--------~~re~~~~LL~~L~~~~~ls~~ 536 (630)
+..+|+-|-..||+++|...+.++..-... ..++...+..++-+.. ...+.+..|+..+...|+.+..
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 466788899999999999999998643333 2455555555554321 1235667788888887765443
No 21
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=40.31 E-value=83 Score=27.48 Aligned_cols=126 Identities=8% Similarity=-0.045 Sum_probs=61.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCC-CCChHHHHHHHHHHHhCCCCCHH
Q 006823 458 TKLNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKI-PPCVEPVIQLLEFLLNKNVLTTR 536 (630)
Q Consensus 458 ~~~s~eel~kk~~~il~EY~~~~D~~Ea~~~i~eL~~p~~~~~~V~~~I~~ale~~-~~~re~~~~LL~~L~~~~~ls~~ 536 (630)
...|++.|++++..+=. +-..+..+..-+-+- ..+..++|..+.. .|.+. ...|=.+.-|+.+.+...-=...
T Consensus 2 ssf~~~~l~~~L~~L~~---s~~sI~~~s~w~l~~--~~~a~~iv~~i~~-~l~~~~~~~KL~~LYLindIl~ns~~~~~ 75 (135)
T 4fu3_A 2 SSFSESALEKKLSELSN---SQQSVQTLSLWLIHH--RKHAGPIVSVWHR-ELRKAKSNRKLTFLYLANDVIQNSKRKGP 75 (135)
T ss_dssp -CCCHHHHHHHHHHCCS---STTHHHHHHHHHHHT--GGGHHHHHHHHHH-HHHHSCTTTHHHHHHHHHHHHHHHTTTCS
T ss_pred CCCCHHHHHHHHHHccc---cHHHHHHHHHHHHHH--HHHHHHHHHHHHH-HHHhcccchhHHHHHHHHHHHHHHHhcCH
Confidence 35788888888776510 111222222222221 1234455554444 45444 34444455555555321101124
Q ss_pred HHHHHHHHHhccc-hhhh-cCCCchhHHHHHHHHHHHHcCCCCHHHHHHHHhhcc
Q 006823 537 DIGTGCLLYGSLL-DDIG-IDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVE 589 (630)
Q Consensus 537 ~~~~Gf~~vle~l-~Dl~-iDvP~A~~~la~~iarai~~~~l~~~~i~~~~~~~~ 589 (630)
+|..+|..++..+ .++. ..-+....-+.+++.-.-..++.+..++..+-..+.
T Consensus 76 ~y~~~f~~~l~~~~~~~~~~~~~~~k~kl~kll~iW~~r~vf~~~~i~~L~~~l~ 130 (135)
T 4fu3_A 76 EFTREFESVLVDAFSHVAREADEGCKKPLERLLNIWQERSVYGGEFIQQLKLSME 130 (135)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHTTSSCHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHh
Confidence 6777777653222 1111 011445566667777776777777777776655443
No 22
>4b8b_A General negative regulator of transcription subun; 2.80A {Saccharomyces cerevisiae S288C}
Probab=35.19 E-value=1.9e+02 Score=32.20 Aligned_cols=89 Identities=12% Similarity=0.140 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHhcCC-CHHHHHHHHHHhCCCC-Ch-HHHHHHHHHHHhcC-----CCCChHH--HHHHHHHHHhCCC
Q 006823 463 ADLRKKTVSLLEEYFSIR-ILDEALQCVEELRAPT-YH-PEVVKEAIALALEK-----IPPCVEP--VIQLLEFLLNKNV 532 (630)
Q Consensus 463 eel~kk~~~il~EY~~~~-D~~Ea~~~i~eL~~p~-~~-~~~V~~~I~~ale~-----~~~~re~--~~~LL~~L~~~~~ 532 (630)
.++++++++..+.+|+.. .+++++.-++.++... -+ .++..++|..-+|. +=..+|+ ++.|+-.|...++
T Consensus 445 ~dIE~ean~yfqkmY~~eisI~~iV~~L~~~K~S~~~rdqdvFaCMIh~LFdEyrff~~YP~~eL~iTA~LFG~LI~~~L 524 (603)
T 4b8b_A 445 NDIEKEMQNYLQKMYSGELAIKDVIELLRRLRDSDLPRDQEVFTCITHAVIAESTFFQDYPLDALATTSVLFGSMILFQL 524 (603)
T ss_dssp HHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHGGGGGGSCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcc
Confidence 479999999999999876 5999999999987543 23 46666666666662 2233454 9999999999999
Q ss_pred CCHHHHHHHHHHHhccchh
Q 006823 533 LTTRDIGTGCLLYGSLLDD 551 (630)
Q Consensus 533 ls~~~~~~Gf~~vle~l~D 551 (630)
|+.-.+.-|+.-|++.+-+
T Consensus 525 l~~~~L~iALr~ILeAlrk 543 (603)
T 4b8b_A 525 LRGFVLDVAFRIIMRFAKE 543 (603)
T ss_dssp SCHHHHHHHHHHHHHHHTS
T ss_pred cCcchHHHHHHHHHHHHhC
Confidence 9999999999999999988
No 23
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=30.63 E-value=85 Score=33.96 Aligned_cols=82 Identities=6% Similarity=-0.061 Sum_probs=59.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCCCCh-HHHHHHHHHHHhcCCCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhc
Q 006823 469 TVSLLEEYFSIRILDEALQCVEELRAPTYH-PEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRDIGTGCLLYGS 547 (630)
Q Consensus 469 ~~~il~EY~~~~D~~Ea~~~i~eL~~p~~~-~~~V~~~I~~ale~~~~~re~~~~LL~~L~~~~~ls~~~~~~Gf~~vle 547 (630)
...+|.-|...|++++|...++++..-... ..++...+..++=+. .+.+.+.+|+..+...|+.+.......+-..+.
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~-g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRK-GDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHC-CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 578899999999999999999998654443 345556666665443 346788899999999888877666666655555
Q ss_pred cchh
Q 006823 548 LLDD 551 (630)
Q Consensus 548 ~l~D 551 (630)
...+
T Consensus 187 ~~g~ 190 (501)
T 4g26_A 187 DTKN 190 (501)
T ss_dssp HTTC
T ss_pred hCCC
Confidence 4444
No 24
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=29.84 E-value=3.8e+02 Score=26.55 Aligned_cols=127 Identities=14% Similarity=0.037 Sum_probs=72.5
Q ss_pred HHHHhcCCCHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhC--CCCCHHHHHHHHHHHhccch
Q 006823 473 LEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNK--NVLTTRDIGTGCLLYGSLLD 550 (630)
Q Consensus 473 l~EY~~~~D~~Ea~~~i~eL~~p~~~~~~V~~~I~~ale~~~~~re~~~~LL~~L~~~--~~ls~~~~~~Gf~~vle~l~ 550 (630)
|.||+-+-++.+|+..++.-+ +.+..++...=|+.+..+..+...|..+.+. +.++...+.+.|..+++.+-
T Consensus 12 lre~L~sWkiK~a~ela~~~e------~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk 85 (265)
T 3b2a_A 12 LRELVLSWQILDAVSLALEDK------RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALS 85 (265)
T ss_dssp HHHHHHTTCHHHHHHHHHHCH------HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhhHHHHHHHHHhch------hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh
Confidence 578888888888887777632 3344444444344445566777777777776 78888899999988886553
Q ss_pred hhhcCCCchhHHHHHHHHHHHHcCCCCHHHHHHHHhhc-----cchHHHHHHHHHHHHHhhcC
Q 006823 551 DIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKV-----EDNMFRRSIFTAAMKSIQSS 608 (630)
Q Consensus 551 Dl~iDvP~A~~~la~~iarai~~~~l~~~~i~~~~~~~-----~~~~~~~~~l~~~l~~l~~~ 608 (630)
+=. -++.-+-.+.+...+.+.-++.+.+..+.+-+ ..++.....+.+++..++..
T Consensus 86 ~~d---Ekval~A~r~L~~LLe~vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~ 145 (265)
T 3b2a_A 86 QEN---EKVTIKALRALGYLVKDVPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQPL 145 (265)
T ss_dssp STT---HHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBS
T ss_pred ccc---hhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcCCcc
Confidence 211 12222233444555555555554433333322 23444455555555555444
No 25
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=29.77 E-value=1.4e+02 Score=27.64 Aligned_cols=106 Identities=10% Similarity=0.161 Sum_probs=63.6
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCChh----hHHHHHHHHHHHhhhhhcCCcchhhHHHHHHHHHHH
Q 006823 178 LGNIRLIGELLKQKMVPEKIVHHIVQELLENDGKTCPAEE----NVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKEL 253 (630)
Q Consensus 178 lGnirFIGELfk~~~l~e~I~~~ci~~LL~~~~~~~p~ee----~IE~lc~LL~tiG~~Ld~~~k~~~~md~~f~rl~~l 253 (630)
.+.+.-|+.+.+.+-...+....+|++-|+. .+.. .+..|=.+++.||+.+...-..+.++ +.|..+
T Consensus 31 w~~ileicD~I~~~~~~~k~A~ral~krl~~-----~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl----~eL~kl 101 (171)
T 1juq_A 31 WEYIIGFCDQINKELEGPQIAVRLLAHKIQS-----PQEWEALQALTVLEACMKNCGRRFHNEVGKFRFL----NELIKV 101 (171)
T ss_dssp HHHHHHHHHHHHHSTTHHHHHHHHHHHHHTC-----SSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHH----HHHHHH
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHH----HHHHHH
Confidence 4667788888888765555555555555553 2332 45555566777788876322233444 445555
Q ss_pred hhC----CCCChHHHHHHHHHHHHHhCCCCCcccccCCCcHHHHHHHHH
Q 006823 254 TTN----SQLVPRLRFMIHDVLDLRANNWVPRREEMKAKTITEIHSEAE 298 (630)
Q Consensus 254 ~~~----~~ls~Rirfmi~dlidLR~n~W~~r~~~~~pkti~ei~~ea~ 298 (630)
... ...+..||-.|..+|+-....... .|+ |.+.+++-.
T Consensus 102 ~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~-----~~~-i~~~y~~Lk 144 (171)
T 1juq_A 102 VSPKYLGDRVSEKVKTKVIELLYSWTMALPE-----EAK-IKDAYHMLK 144 (171)
T ss_dssp HCCCCCCTTSCHHHHHHHHHHHHHHHHHCTT-----CHH-HHHHHHHHH
T ss_pred hccccCCCCCCHHHHHHHHHHHHHHHHHcCC-----CcH-HHHHHHHHH
Confidence 542 356889999999999987644321 233 666665443
No 26
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=26.89 E-value=3.6e+02 Score=30.99 Aligned_cols=58 Identities=14% Similarity=0.114 Sum_probs=43.0
Q ss_pred HhcCCC-CChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccchhhhcCCCchhHHHHHHHHHHH
Q 006823 509 ALEKIP-PCVEPVIQLLEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLV 571 (630)
Q Consensus 509 ale~~~-~~re~~~~LL~~L~~~~~ls~~~~~~Gf~~vle~l~Dl~iDvP~A~~~la~~iarai 571 (630)
+|++++ ....++.++|.+|+..++++..-+.+=|..+++.+.|. |+|.++ +.+++.++
T Consensus 96 ~l~~~~~~~~k~~lrFLa~L~n~~Vv~~~~il~lL~~Ll~~~~e~--~~~q~r---~D~~v~~v 154 (771)
T 1h2v_C 96 SLKANNYNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQEE--DVPQVR---RDWYVYAF 154 (771)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTTSBCHHHHHHHHHHHHHGGGCS--SCCHHH---HHHHHHHH
T ss_pred HHHccChHHHHHHHHHHHHhccCCeecHHHHHHHHHHHHHhhhhc--CCcccc---hhHHHHHH
Confidence 444554 34567889999999999999999999999999988664 677543 23444444
No 27
>3l39_A Putative PHOU-like phosphate regulatory protein; BT4638, structural genomics, joint center for structural genomics, JCSG; 1.93A {Bacteroides thetaiotaomicron}
Probab=26.04 E-value=4.3e+02 Score=25.09 Aligned_cols=61 Identities=15% Similarity=0.114 Sum_probs=41.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCCCChHHHHHHHHHHHhcC---CCCChHHHHHHHHHHHh
Q 006823 469 TVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEK---IPPCVEPVIQLLEFLLN 529 (630)
Q Consensus 469 ~~~il~EY~~~~D~~Ea~~~i~eL~~p~~~~~~V~~~I~~ale~---~~~~re~~~~LL~~L~~ 529 (630)
.-.+|.+++..+|..++...++++..-.....-+.+-|...|-+ .+-+|+-+..|+..+-+
T Consensus 42 ~a~~L~~~l~~~~~~~~~~~~~~I~~lE~~aD~i~~~i~~~L~~~fitP~dReDI~~L~~~lDd 105 (227)
T 3l39_A 42 SSVLLVESMEHDLPTERADYYKQIKDMEREGDRLTHLIFDELSTTFITPFDREDIHDLASCMDD 105 (227)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHH
Confidence 44578999988787777777776654333344555555556665 47889988888887644
No 28
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=23.71 E-value=2.5e+02 Score=29.32 Aligned_cols=135 Identities=12% Similarity=0.026 Sum_probs=78.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCCC-CChHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 006823 467 KKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIP-PCVEPVIQLLEFLLNKNVLTTRDIGTGCLLY 545 (630)
Q Consensus 467 kk~~~il~EY~~~~D~~Ea~~~i~eL~~p~~~~~~V~~~I~~ale~~~-~~re~~~~LL~~L~~~~~ls~~~~~~Gf~~v 545 (630)
...+.+++.|..+.+.+|-..++..|.+ ...+.++.+.+..+++.+. ...+ +..++..+.. +-...+ .++.=+
T Consensus 252 ~~~~~l~~~y~~s~~~~ek~~ll~aL~~-s~d~~ll~~~L~~~l~~~~ir~qD-~~~~~~~v~~-n~~g~~---~aw~fl 325 (419)
T 3rjo_A 252 EGWDFLYSKYQFSLSSTEKSQIEFALCR-TQNKEKLQWLLDESFKGDKIKTQE-FPQILTLIGR-NPVGYP---LAWQFL 325 (419)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHTT-CSCHHHHHHHHHHHHHTSSSCGGG-HHHHHHHHHT-STTTHH---HHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHcCC-CCCHHHHHHHHHHHhCCCCCchhH-HHHHHHHHhc-CcchHH---HHHHHH
Confidence 3468899999999999999999999977 3467899999999997653 3333 3345555543 434333 223333
Q ss_pred hccchhhhcCCCchhHHHHHHHHHHHHcCCCCHHH---HHHHHhhccchHHHHHHHHHHHHHhhcC
Q 006823 546 GSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIV---LKEVLKKVEDNMFRRSIFTAAMKSIQSS 608 (630)
Q Consensus 546 le~l~Dl~iDvP~A~~~la~~iarai~~~~l~~~~---i~~~~~~~~~~~~~~~~l~~~l~~l~~~ 608 (630)
.+..+.|.--.+.....++.+|.. +.....+... ++..+......+...+.+..++..++.+
T Consensus 326 ~~nw~~l~~~~~~~~~~~~~~i~~-~~~~~~t~~~l~e~~~Ff~~~~~~~~~~~~~~qale~i~~n 390 (419)
T 3rjo_A 326 RKNWNKLVQKFELGSSSIAHMVMG-TTNQFSTRTRLEEVKGFFSSLKENGSQLRCVQQTIETIEEN 390 (419)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHH-TTTTCCSHHHHHHHHHHHHTTTTC-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCchhHHHHHHH-HhhcCCCHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHH
Confidence 344444443333333445555433 2344445443 4444444333332345566777777653
No 29
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=23.04 E-value=2.1e+02 Score=25.81 Aligned_cols=69 Identities=17% Similarity=0.230 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCC---CCChHHHHHHHHHH----------HhcCCCCChHHHHHHHHHH
Q 006823 461 NLADLRKKTVSLLEEYFSIRILDEALQCVEELRA---PTYHPEVVKEAIAL----------ALEKIPPCVEPVIQLLEFL 527 (630)
Q Consensus 461 s~eel~kk~~~il~EY~~~~D~~Ea~~~i~eL~~---p~~~~~~V~~~I~~----------ale~~~~~re~~~~LL~~L 527 (630)
....+.+.+..++.-.|..|-++|....|++|.. |.|..++|...+.. +++.++.+.+.+..+.+.|
T Consensus 2 ~~~~~~~~~~~~~~~l~~~g~LD~~f~qL~~L~~~~~~~~~~ell~~Fl~d~~~~l~~L~~al~~~~~D~~~l~~~aH~L 81 (153)
T 3us6_A 2 EVGQMRRQWVDYIKSMFMEGFLDGQFLQLQQLQDENNPEFVFEVVSLFFDDSERILKDLSFAVDQQSIDFKKVDAHVHQF 81 (153)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTCBTTBTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcccccchHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHH
Confidence 3456778888888889999988899999999953 45555555555443 2333333555555555555
Q ss_pred Hh
Q 006823 528 LN 529 (630)
Q Consensus 528 ~~ 529 (630)
..
T Consensus 82 KG 83 (153)
T 3us6_A 82 KG 83 (153)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 30
>1u84_A Hypothetical protein; structural genomics, protein structure initiative, MCSG, PSI center for structural genomics; 1.60A {Geobacillus stearothermophilus} SCOP: a.230.1.1 PDB: 3r2x_C*
Probab=21.55 E-value=2.7e+02 Score=23.05 Aligned_cols=64 Identities=16% Similarity=0.297 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhhcCC-----hhhHHHHHHHHHH--ccCCChHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhh
Q 006823 49 DRVLKTVKGILNKLT-----PEKFDVLKGQLID--SGITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNEK 116 (630)
Q Consensus 49 e~l~r~vk~iLNKLT-----penfd~l~~ql~~--l~i~~~e~L~~vi~lIfeKAi~Ep~fs~~YA~LC~~L~~~ 116 (630)
....+++.-+||.-. ++.++.-+..++. ...++...|-..|..||+.+-++-- -+.. |..++.+
T Consensus 7 ~~~~~~~~~iI~~WDPf~~g~D~Y~~Ei~~Iv~av~~~d~~~~LA~~Iq~If~~SFee~~---p~e~-c~~iA~k 77 (90)
T 1u84_A 7 QQLNRLLLEWIGAWDPFGLGKDAYDVEAASVLQAVYETEDARTLAARIQSIYEFAFDEPI---PFPH-CLKLARR 77 (90)
T ss_dssp CHHHHHHHHHHHHHCTTSSCGGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHSSCC---CHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCcCCCccchHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccc---ChHH-HHHHHHH
Confidence 346677778888755 5777877777776 3567899999999999999996643 2334 6655543
No 31
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=21.27 E-value=2.9e+02 Score=25.46 Aligned_cols=62 Identities=8% Similarity=0.088 Sum_probs=39.2
Q ss_pred CHHHHHHHHHHHHHHHhcCCCHHHHHHHH-HHhCCCCChHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHHh
Q 006823 461 NLADLRKKTVSLLEEYFSIRILDEALQCV-EELRAPTYHPEVVKEAIALALEKIPPC-VEPVIQLLEFLLN 529 (630)
Q Consensus 461 s~eel~kk~~~il~EY~~~~D~~Ea~~~i-~eL~~p~~~~~~V~~~I~~ale~~~~~-re~~~~LL~~L~~ 529 (630)
|.+|+..|+..+|..=|+..+.+--++-+ .|. .+.+.+...+|. ||...... .. .+|.+|..
T Consensus 42 st~e~~~kv~eii~~~~e~s~~~~Lv~~l~~e~---Gi~~~fs~~Ii~-ALs~tsM~~p~---~VL~~l~~ 105 (168)
T 3cz6_A 42 STRQFMDKLHEVISGDYEPSQAEKLVQDLCDET---GIRKNFSTSILT-CLSGDLMVFPR---YFLNMFKD 105 (168)
T ss_dssp SHHHHHHHHHHHHHSCCCTTCHHHHHHHHHHHH---CBCHHHHHHHHH-HTTTCGGGHHH---HHHHHHHH
T ss_pred CHHHHHHHHHHHHhcccChhhHHHHHHHHHHHh---CcccccHHHHHH-HhcCCcccCHH---HHHHHHHh
Confidence 67899999999998555555555444444 333 456677777777 77665544 22 55555543
No 32
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=20.66 E-value=77 Score=37.99 Aligned_cols=86 Identities=8% Similarity=0.032 Sum_probs=56.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCCCh-HHHHHHHHHHHhcCCCCChHHHHHHHHHHHhCCC----------CCHHHH
Q 006823 470 VSLLEEYFSIRILDEALQCVEELRAPTYH-PEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNV----------LTTRDI 538 (630)
Q Consensus 470 ~~il~EY~~~~D~~Ea~~~i~eL~~p~~~-~~~V~~~I~~ale~~~~~re~~~~LL~~L~~~~~----------ls~~~~ 538 (630)
..+|+=|...|.++||...++++...... ..+.+.++..++=+.....+.+.+||..+...|+ ++.++-
T Consensus 169 NtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 169 NAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 45677788888888888888888655554 3566777777776655445677789998888775 344444
Q ss_pred HHHHHHHhccchhhhcC
Q 006823 539 GTGCLLYGSLLDDIGID 555 (630)
Q Consensus 539 ~~Gf~~vle~l~Dl~iD 555 (630)
..-+..|-..-++...+
T Consensus 249 ~~vL~~Vrkv~P~f~p~ 265 (1134)
T 3spa_A 249 ATVLKAVHKVKPTFSLP 265 (1134)
T ss_dssp HHHHHHHGGGCCCCCCC
T ss_pred HHHHHHHHHhCcccCCC
Confidence 44444555555555554
No 33
>1yoz_A Hypothetical protein AF0941; APC5573, midwest center for structural genomics, MCSG, protein structure initiative, PSI, structural genomics; 2.00A {Archaeoglobus fulgidus} SCOP: a.253.1.1
Probab=20.39 E-value=66 Score=27.25 Aligned_cols=83 Identities=13% Similarity=0.153 Sum_probs=50.1
Q ss_pred CCHHHHHHHHHHhCCCCChHHHHHHHHHHHhc---CCCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccchhhhcCC
Q 006823 480 RILDEALQCVEELRAPTYHPEVVKEAIALALE---KIPPCVEPVIQLLEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDL 556 (630)
Q Consensus 480 ~D~~Ea~~~i~eL~~p~~~~~~V~~~I~~ale---~~~~~re~~~~LL~~L~~~~~ls~~~~~~Gf~~vle~l~Dl~iDv 556 (630)
.+++|| ++|-.|....++.+.=++..++ ....+.|-+-.-|.-|. +.--+|+..-|.++++.|+|..--|
T Consensus 21 m~VeeA----k~L~D~eni~EmFRsD~E~I~~~f~~G~~t~EEa~~nl~~LK---~YavSQL~~Hy~ri~~~l~d~e~Ki 93 (116)
T 1yoz_A 21 KSVEEA----DKLLDQKNIFEMFRSDCEEILNLYKSGKAEKEEVQRNFYLLK---TYVVSQLSIHFERLKEFAESKGFKI 93 (116)
T ss_dssp SCGGGH----HHHTCHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH---HHHHHTHHHHHHHHHHHHHTTC---
T ss_pred hhHHHH----HHccCHHHHHHHHHhhHHHHHHHHHcCCccHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347777 7776666555555444443333 45666666665555443 3556789999999999999999877
Q ss_pred -----CchhHHHHHHHHH
Q 006823 557 -----PKAPNNFGEMVGK 569 (630)
Q Consensus 557 -----P~A~~~la~~iar 569 (630)
|.+-+-+|-+|.|
T Consensus 94 ~kkl~~ev~~~i~~~~~~ 111 (116)
T 1yoz_A 94 EKKLDPEVINEIALYIDR 111 (116)
T ss_dssp CCCCCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHhHHHHHHHH
Confidence 4444444444444
No 34
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=20.25 E-value=5.2e+02 Score=23.94 Aligned_cols=83 Identities=12% Similarity=0.171 Sum_probs=56.4
Q ss_pred HHHHHHHHHhCC---CCC---hHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccchhhhcCC
Q 006823 483 DEALQCVEELRA---PTY---HPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDL 556 (630)
Q Consensus 483 ~Ea~~~i~eL~~---p~~---~~~~V~~~I~~ale~~~~~re~~~~LL~~L~~~~~ls~~~~~~Gf~~vle~l~Dl~iDv 556 (630)
..|..|+..|-. +.| +..++..++...-|++...|+.+...|..++.. ++.+++...+.. .|.+ .-
T Consensus 75 ~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~--~~~~~ll~~l~~---~l~~---~~ 146 (242)
T 2qk2_A 75 AMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAS--TSLEAQQESIVE---SLSN---KN 146 (242)
T ss_dssp HHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT--SCHHHHHHHHHH---HTTC---SC
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHc--CCHHHHHHHHHH---HHcC---CC
Confidence 477788877631 222 345666666655566777899999999999873 455666555444 4443 35
Q ss_pred CchhHHHHHHHHHHHHc
Q 006823 557 PKAPNNFGEMVGKLVVA 573 (630)
Q Consensus 557 P~A~~~la~~iarai~~ 573 (630)
|.+......++++++..
T Consensus 147 ~~vr~~~l~~l~~~l~~ 163 (242)
T 2qk2_A 147 PSVKSETALFIARALTR 163 (242)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 89999999999997754
Done!