BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006824
(630 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x
Length = 417
Score = 301 bits (771), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 168/410 (40%), Positives = 246/410 (60%), Gaps = 19/410 (4%)
Query: 213 IRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTG 272
+ +G + P +++F D +M I Y +PT +Q A+PII RD++ A+TG
Sbjct: 3 VEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTG 62
Query: 273 SGKTAAFVLPMIVHIM-DQP----ELQKEEG--------PIGVICAPTRELAHQIYLETK 319
SGKTAAF+LP++ I D P KE G PI ++ APTRELA QIY E +
Sbjct: 63 SGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEAR 122
Query: 320 KFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLD 379
KF+ +R VYGG Q ++L+ GC +++ATPGRL+DM++ + + YLVLD
Sbjct: 123 KFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLD 182
Query: 380 EADRMFDLGFEPQIRSIVGQ--IRPD--RQTLLFSATMPRKVEKLAREILSDPVRVTVGE 435
EADRM D+GFEPQIR IV Q + P R T++FSAT P++++ LAR+ L + + + VG
Sbjct: 183 EADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 242
Query: 436 VGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGF 495
VG +E+ITQ V V +++K +LL+ L D LVF K D +E L +G+
Sbjct: 243 VGSTSENITQKV-VWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGY 301
Query: 496 KAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHV 555
++HGD+ Q R E L +F+SG +L+AT VAARGLDI ++K V+NFD+ D++ +V
Sbjct: 302 ACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYV 361
Query: 556 HRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLA 605
HRIGRTGR G+ G A + ++ +L++ L+ A Q V L ++A
Sbjct: 362 HRIGRTGRVGNL-GLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMA 410
>pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|B Chain B, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|C Chain C, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|D Chain D, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
Length = 434
Score = 296 bits (758), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 161/403 (39%), Positives = 246/403 (61%), Gaps = 5/403 (1%)
Query: 197 SGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQAL 256
SG++ ++ ++V+G DVP+P++ F ++ ++K GY+ PT IQ ++
Sbjct: 28 SGIASGIHFSKYNNIPVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSI 87
Query: 257 PIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYL 316
P+I SGRD++ A+TGSGKTAAF+LP++ +++ P + P VI +PTRELA QI+
Sbjct: 88 PVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFN 147
Query: 317 ETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYL 376
E +KFA +++ VYGG S Q + + GC +VIATPGRL+D + +T ++
Sbjct: 148 EARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFV 207
Query: 377 VLDEADRMFDLGFEPQIRSIVGQI--RPDRQTLLFSATMPRKVEKLAREILSDPVRVTVG 434
VLDEADRM D+GF +R I+ + RP+ QTL+FSAT P +++++A E L + V V +G
Sbjct: 208 VLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIG 267
Query: 435 EVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKG 494
VG A D+ Q ++ + A++ L+E L D +VF K D + S L++K
Sbjct: 268 IVGGACSDVKQTIYEVNKYAKR-SKLIEILSEQAD--GTIVFVETKRGADFLASFLSEKE 324
Query: 495 FKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMH 554
F ++HGD+ Q+ R + L+ FK+G VLIAT VA+RGLDIK+IK V+N+D+ +D +
Sbjct: 325 FPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDY 384
Query: 555 VHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNV 597
VHRIGRTGR G+ +K+ A +LV L +GQ V
Sbjct: 385 VHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTV 427
>pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Dead-Box Rna Helicase Ddx5 (P68)
Length = 253
Score = 259 bits (661), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 118/250 (47%), Positives = 172/250 (68%)
Query: 185 FNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQG 244
F K+FYQ+ ++ + Q+V Y++S I V G + P+PV F + F +M I++Q
Sbjct: 3 FEKNFYQEHPDLARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQN 62
Query: 245 YEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC 304
+ +PT+IQ Q P+ LSG D++G+A+TGSGKT +++LP IVHI QP L++ +GPI ++
Sbjct: 63 FTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVL 122
Query: 305 APTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLK 364
APTRELA Q+ ++ ++ ++ + +YGG K Q ++L+ G EI IATPGRLID L+
Sbjct: 123 APTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLE 182
Query: 365 MKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREI 424
+ R TYLVLDEADRM D+GFEPQIR IV QIRPDRQTL++SAT P++V +LA +
Sbjct: 183 CGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDF 242
Query: 425 LSDPVRVTVG 434
L D + + +G
Sbjct: 243 LKDYIHINIG 252
>pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
pdb|3FE2|B Chain B, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
Length = 242
Score = 246 bits (628), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 113/235 (48%), Positives = 163/235 (69%)
Query: 200 SEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPII 259
+ Q+V Y++S I V G + P+PV F + F +M I++Q + +PT+IQ Q P+
Sbjct: 4 TAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVA 63
Query: 260 LSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETK 319
LSG D++G+A+TGSGKT +++LP IVHI QP L++ +GPI ++ APTRELA Q+
Sbjct: 64 LSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAA 123
Query: 320 KFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLD 379
++ ++ ++ + +YGG K Q ++L+ G EI IATPGRLID L+ + R TYLVLD
Sbjct: 124 EYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLD 183
Query: 380 EADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVG 434
EADRM D+GFEPQIR IV QIRPDRQTL++SAT P++V +LA + L D + + +G
Sbjct: 184 EADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIG 238
>pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
pdb|1HV8|B Chain B, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
Length = 367
Score = 221 bits (563), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 127/358 (35%), Positives = 199/358 (55%), Gaps = 18/358 (5%)
Query: 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGR-DIIGIAKTGSGKTAAFVLPMI 284
F + S +++AI +G+EKPT IQ + +P+ L+ +I+ A+TGSGKTA+F +P+I
Sbjct: 7 NFNELNLSDNILNAIRNKGFEKPTDIQXKVIPLFLNDEYNIVAQARTGSGKTASFAIPLI 66
Query: 285 VHIMDQPELQKEEGPI-GVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK 343
EL E I +I PTRELA Q+ E + + ++++ +YGG + Q K
Sbjct: 67 -------ELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIK 119
Query: 344 ELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPD 403
LK IV+ TPGR++D + L + V Y +LDEAD + GF + I+ D
Sbjct: 120 ALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEXLNXGFIKDVEKILNACNKD 178
Query: 404 RQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEK 463
++ LLFSAT PR++ LA++ D + N +I Q +V ++ E+ L
Sbjct: 179 KRILLFSATXPREILNLAKKYXGDYSFIK----AKINANIEQS-YVEVNENERFEALCRL 233
Query: 464 LPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHV 523
L G LVF K E+ S L GFKA A+HGD Q+ R ++++ FK +
Sbjct: 234 LKNKEFYG--LVFCKTKRDTKELASXLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRI 291
Query: 524 LIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEAR 581
LIATDV +RG+D+ + V+N+ + ++ + + HRIGRTGRAG K G A +++ ++E +
Sbjct: 292 LIATDVXSRGIDVNDLNCVINYHLPQNPESYXHRIGRTGRAG-KKGKAISIINRREYK 348
>pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|B Chain B, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|C Chain C, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|D Chain D, Crystal Structure Of Human Apo-Eif4aiii
Length = 391
Score = 216 bits (549), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 121/385 (31%), Positives = 208/385 (54%), Gaps = 13/385 (3%)
Query: 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIV 285
TF+ G L+ I G+EKP++IQ +A+ I+ GRD+I +++G+GKTA F +
Sbjct: 17 TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFS----I 72
Query: 286 HIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKEL 345
++ ++Q E +I APTRELA QI ++ A GG + + ++L
Sbjct: 73 SVLQCLDIQVRETQ-ALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKL 131
Query: 346 KAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 405
G +V TPGR+ DM++ ++L + LVLDEAD M + GF+ QI + + P Q
Sbjct: 132 DYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQ 191
Query: 406 TLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLP 465
+L SAT+P ++ ++ + ++DP+R+ V + E I Q + E+ W + L
Sbjct: 192 VVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAV----EREEWKFDTLC 247
Query: 466 GMIDDGDV---LVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYH 522
+ D + ++F + K VD + ++ + F +++HGD Q R I+++F+SG
Sbjct: 248 DLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASR 307
Query: 523 VLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARF 582
VLI+TDV ARGLD+ + ++N+D+ + ++++HRIGR+GR G K G A V + R
Sbjct: 308 VLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRK-GVAINFVKNDDIRI 366
Query: 583 AGELVNSLIAAGQNVSMELMDLAMK 607
++ + M + DL ++
Sbjct: 367 LRDIEQYYSTQIDEMPMNVADLILE 391
>pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0Q|B Chain B, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0S|A Chain A, The Crystal Structure Of The Exon Junction Complex At 2.2
A Resolution
Length = 410
Score = 216 bits (549), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 118/360 (32%), Positives = 199/360 (55%), Gaps = 13/360 (3%)
Query: 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIV 285
TF+ G L+ I G+EKP++IQ +A+ I+ GRD+I +++G+GKTA F +
Sbjct: 38 TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFS----I 93
Query: 286 HIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKEL 345
++ ++Q E +I APTRELA QI ++ A GG + + ++L
Sbjct: 94 SVLQCLDIQVRETQ-ALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKL 152
Query: 346 KAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 405
G +V TPGR+ DM++ ++L + LVLDEAD M + GF+ QI + + P Q
Sbjct: 153 DYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQ 212
Query: 406 TLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLP 465
+L SAT+P ++ ++ + ++DP+R+ V + E I Q + E+ W + L
Sbjct: 213 VVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAV----EREEWKFDTLC 268
Query: 466 GMIDDGDV---LVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYH 522
+ D + ++F + K VD + ++ + F +++HGD Q R I+++F+SG
Sbjct: 269 DLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASR 328
Query: 523 VLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARF 582
VLI+TDV ARGLD+ + ++N+D+ + ++++HRIGR+GR G K G A V + R
Sbjct: 329 VLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRK-GVAINFVKNDDIRI 387
>pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|2HYI|I Chain I, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|3EX7|C Chain C, The Crystal Structure Of Ejc In Its Transition State
pdb|3EX7|H Chain H, The Crystal Structure Of Ejc In Its Transition State
Length = 413
Score = 216 bits (549), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 121/385 (31%), Positives = 208/385 (54%), Gaps = 13/385 (3%)
Query: 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIV 285
TF+ G L+ I G+EKP++IQ +A+ I+ GRD+I +++G+GKTA F +
Sbjct: 39 TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFS----I 94
Query: 286 HIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKEL 345
++ ++Q E +I APTRELA QI ++ A GG + + ++L
Sbjct: 95 SVLQCLDIQVRETQ-ALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKL 153
Query: 346 KAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 405
G +V TPGR+ DM++ ++L + LVLDEAD M + GF+ QI + + P Q
Sbjct: 154 DYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQ 213
Query: 406 TLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLP 465
+L SAT+P ++ ++ + ++DP+R+ V + E I Q + E+ W + L
Sbjct: 214 VVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAV----EREEWKFDTLC 269
Query: 466 GMIDDGDV---LVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYH 522
+ D + ++F + K VD + ++ + F +++HGD Q R I+++F+SG
Sbjct: 270 DLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASR 329
Query: 523 VLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARF 582
VLI+TDV ARGLD+ + ++N+D+ + ++++HRIGR+GR G K G A V + R
Sbjct: 330 VLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRK-GVAINFVKNDDIRI 388
Query: 583 AGELVNSLIAAGQNVSMELMDLAMK 607
++ + M + DL ++
Sbjct: 389 LRDIEQYYSTQIDEMPMNVADLILE 413
>pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
pdb|2XB2|X Chain X, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
Length = 411
Score = 216 bits (549), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 118/360 (32%), Positives = 199/360 (55%), Gaps = 13/360 (3%)
Query: 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIV 285
TF+ G L+ I G+EKP++IQ +A+ I+ GRD+I +++G+GKTA F +
Sbjct: 39 TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFS----I 94
Query: 286 HIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKEL 345
++ ++Q E +I APTRELA QI ++ A GG + + ++L
Sbjct: 95 SVLQCLDIQVRETQ-ALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKL 153
Query: 346 KAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 405
G +V TPGR+ DM++ ++L + LVLDEAD M + GF+ QI + + P Q
Sbjct: 154 DYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQ 213
Query: 406 TLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLP 465
+L SAT+P ++ ++ + ++DP+R+ V + E I Q + E+ W + L
Sbjct: 214 VVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAV----EREEWKFDTLC 269
Query: 466 GMIDDGDV---LVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYH 522
+ D + ++F + K VD + ++ + F +++HGD Q R I+++F+SG
Sbjct: 270 DLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASR 329
Query: 523 VLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARF 582
VLI+TDV ARGLD+ + ++N+D+ + ++++HRIGR+GR G K G A V + R
Sbjct: 330 VLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRK-GVAINFVKNDDIRI 388
>pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 215 bits (548), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 118/359 (32%), Positives = 199/359 (55%), Gaps = 13/359 (3%)
Query: 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIV 285
TF+ G L+ I G+EKP++IQ +A+ I+ GRD+I +++G+GKTA F V
Sbjct: 2 TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFS----V 57
Query: 286 HIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKEL 345
++ ++Q E +I APTRELA Q+ ++ A GG + + ++L
Sbjct: 58 SVLQCLDIQVRETQ-ALILAPTRELAVQVQKGLLALGDYMNVQCHACIGGTNVGEDIRKL 116
Query: 346 KAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 405
G +V TPGR+ DM++ ++L + LVLDEAD M + GF+ QI + + P Q
Sbjct: 117 DYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQ 176
Query: 406 TLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLP 465
+L SAT+P ++ ++ + ++DP+R+ V + E I Q + E+ W + L
Sbjct: 177 VVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAV----EREEWKFDTLC 232
Query: 466 GMIDDGDV---LVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYH 522
+ D + ++F + K VD + ++ + F +++HGD Q R I+++F+SG
Sbjct: 233 DLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASR 292
Query: 523 VLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEAR 581
VLI+TDV ARGLD+ + ++N+D+ + ++++HRIGR+GR G K G A V + R
Sbjct: 293 VLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRK-GVAVNFVKNDDIR 350
>pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 215 bits (547), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 119/359 (33%), Positives = 199/359 (55%), Gaps = 13/359 (3%)
Query: 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIV 285
TF+ G L+ I G+EKP++IQ +A+ I+ GRD+I +++G+GKTA F V
Sbjct: 2 TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFS----V 57
Query: 286 HIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKEL 345
++ ++Q E +I APTRELA Q+ ++ A GG + + ++L
Sbjct: 58 SVLQCLDIQVRETQ-ALILAPTRELAVQVQKGLLALGDYMNVQSHACIGGTNVGEDIRKL 116
Query: 346 KAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 405
G +V TPGR+ DM++ ++L + LVLDEAD M + GF+ QI + + P Q
Sbjct: 117 DYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQ 176
Query: 406 TLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLP 465
+L SAT+P +V ++ + ++DP+R+ V + E I Q + E+ W + L
Sbjct: 177 VVLISATLPHEVLEMTNKFMTDPIRILVKRDELTLEGIKQFFVAV----EREEWKFDTLC 232
Query: 466 GMIDDGDV---LVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYH 522
+ D + ++F + K VD + ++ + F +++HGD Q R I+++F+SG
Sbjct: 233 DLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASR 292
Query: 523 VLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEAR 581
VLI+TDV ARGLD+ + ++N+D+ + ++++HRIGR+GR G K G A V + R
Sbjct: 293 VLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRK-GVAVNFVKNDDIR 350
>pdb|1WRB|A Chain A, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
pdb|1WRB|B Chain B, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
Length = 253
Score = 195 bits (496), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 100/246 (40%), Positives = 155/246 (63%), Gaps = 10/246 (4%)
Query: 210 SLAIRVSG--FDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIG 267
S+ + V+G + ++ F++ + + I Y++PT IQ A+P IL RDI+
Sbjct: 6 SIPVSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMA 65
Query: 268 IAKTGSGKTAAFVLPMIVHI----MDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323
A+TGSGKTAAF++P+I H+ ++Q K P +I APTRELA QI E++KF+
Sbjct: 66 CAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSL 125
Query: 324 SHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR 383
+ +R VYGG Q +E++ GC +++ATPGRL+D ++ +++ Y+VLDEADR
Sbjct: 126 NTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADR 185
Query: 384 MFDLGFEPQIRSIVGQIRP----DRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMA 439
M D+GFEPQIR I+ + +RQTL+FSAT P++++KLA + L + + +TVG VG
Sbjct: 186 MLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGST 245
Query: 440 NEDITQ 445
++ I Q
Sbjct: 246 SDSIKQ 251
>pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p
Length = 400
Score = 194 bits (492), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 114/357 (31%), Positives = 187/357 (52%), Gaps = 10/357 (2%)
Query: 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIV 285
TFED +L+ I + G+EKP+ IQ +A+P+ ++GRDI+ AK G+GKTAAFV+P +
Sbjct: 22 TFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLE 81
Query: 286 HIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKEL 345
+ +P+L K + +I PTRELA Q + K GI GG + D L
Sbjct: 82 KV--KPKLNKIQA---LIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRL 136
Query: 346 KAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 405
I++ TPGR++D+ K +S + ++DEAD+M F+ I I+ + P Q
Sbjct: 137 NETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQ 196
Query: 406 TLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLP 465
+LLFSAT P V++ + L P + + E + + ITQ + + +KL L L
Sbjct: 197 SLLFSATFPLTVKEFMVKHLHKPYEINLME-ELTLKGITQ-YYAFVEERQKL-HCLNTLF 253
Query: 466 GMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLI 525
+ ++F + V+ + ++ G+ H Q R ++ +F+ G L+
Sbjct: 254 SKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLV 313
Query: 526 ATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARF 582
+D+ RG+DI+++ V+NFD + + ++HRIGR+GR G G A L+ + RF
Sbjct: 314 CSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHL-GLAINLINWND-RF 368
>pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna
Helicase From Sulfolobus Tokodaii
Length = 337
Score = 192 bits (488), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 116/341 (34%), Positives = 190/341 (55%), Gaps = 24/341 (7%)
Query: 235 QLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQ 294
++ AI + G++ T +Q + +P++L G++++ AKTGSGKTAA+ +P++
Sbjct: 4 KIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPIL---------- 53
Query: 295 KEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIA 354
E G ++ PTREL Q+ + + +V+ VYGGM Q ++ +IV+A
Sbjct: 54 -ELGMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVVA 111
Query: 355 TPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMP 414
TPGRL+D+ + +S +++DEAD MF++GF I+ I+ Q + T LFSAT+P
Sbjct: 112 TPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRKITGLFSATIP 171
Query: 415 RKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVL 474
++ K+ ++ +++ + +G+AN + + VHV K+ L E D V+
Sbjct: 172 EEIRKVVKDFITNYEEIEAC-IGLANVE-HKFVHVKDDWRSKVQALREN-----KDKGVI 224
Query: 475 VFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGL 534
VF + V ++L + A L GD Q+ R + F+ G Y +LI TDVA+RGL
Sbjct: 225 VFVRTRNRV----AKLVRLFDNAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGL 280
Query: 535 DIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLV 575
DI ++ V+NFD +D+ ++HRIGRTGR G K G A T +
Sbjct: 281 DIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRK-GEAITFI 320
>pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a
pdb|3EIQ|D Chain D, Crystal Structure Of Pdcd4-eif4a
Length = 414
Score = 189 bits (481), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 121/362 (33%), Positives = 201/362 (55%), Gaps = 14/362 (3%)
Query: 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPM 283
V +F+D S L+ I G+EKP++IQ +A+ + G D+I A++G+GKTA F
Sbjct: 39 VDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFA--- 95
Query: 284 IVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK 343
+ I+ Q EL + ++ APTRELA QI G A GG + + +
Sbjct: 96 -ISILQQIELDLKATQ-ALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQ 153
Query: 344 ELKAGC-EIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRP 402
+L+ I++ TPGR+ DML + L+ + VLDEAD M GF+ QI I ++
Sbjct: 154 KLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNS 213
Query: 403 DRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLE 462
+ Q +L SATMP V ++ ++ + DP+R+ V + + E I Q + E+ W L+
Sbjct: 214 NTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFY----INVEREEWKLD 269
Query: 463 KLPGMIDDGDV---LVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSG 519
L + + + ++F + + VD + ++ + F +A+HGD DQ R I+++F+SG
Sbjct: 270 TLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSG 329
Query: 520 VYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKE 579
VLI TD+ ARG+D++ + V+N+D+ + + ++HRIGR GR G + G A +VT+++
Sbjct: 330 SSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFG-RKGVAINMVTEED 388
Query: 580 AR 581
R
Sbjct: 389 KR 390
>pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|C Chain C, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|D Chain D, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|F Chain F, Crystal Structure Of The Eif4a-Pdcd4 Complex
Length = 388
Score = 189 bits (480), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 121/362 (33%), Positives = 201/362 (55%), Gaps = 14/362 (3%)
Query: 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPM 283
V +F+D S L+ I G+EKP++IQ +A+ + G D+I A++G+GKTA F
Sbjct: 13 VDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFA--- 69
Query: 284 IVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK 343
+ I+ Q EL + ++ APTRELA QI G A GG + + +
Sbjct: 70 -ISILQQIELDLKATQ-ALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQ 127
Query: 344 ELKAGC-EIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRP 402
+L+ I++ TPGR+ DML + L+ + VLDEAD M GF+ QI I ++
Sbjct: 128 KLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNS 187
Query: 403 DRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLE 462
+ Q +L SATMP V ++ ++ + DP+R+ V + + E I Q + E+ W L+
Sbjct: 188 NTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFY----INVEREEWKLD 243
Query: 463 KLPGMIDDGDV---LVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSG 519
L + + + ++F + + VD + ++ + F +A+HGD DQ R I+++F+SG
Sbjct: 244 TLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSG 303
Query: 520 VYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKE 579
VLI TD+ ARG+D++ + V+N+D+ + + ++HRIGR GR G + G A +VT+++
Sbjct: 304 SSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFG-RKGVAINMVTEED 362
Query: 580 AR 581
R
Sbjct: 363 KR 364
>pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56
Length = 390
Score = 176 bits (447), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 109/360 (30%), Positives = 189/360 (52%), Gaps = 12/360 (3%)
Query: 221 PRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFV 280
P + F D +L+ AI G+E P+ +Q + +P + G D++ AK+G GKTA FV
Sbjct: 3 PGHMSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFV 62
Query: 281 LPMIVHIMDQPELQKEEGPIGV-ICAPTRELAHQIYLETKKFAKSH-GIRVSAVYGGMSK 338
L + +L+ G + V + TRELA QI E ++F+K ++V+ +GG+S
Sbjct: 63 LATL------QQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSI 116
Query: 339 LDQFKELKAGC-EIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFD-LGFEPQIRSI 396
+ LK C IV+ TPGR++ + + K+L + + + +LDEAD+M + L ++ I
Sbjct: 117 KKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDEADKMLEQLDMRRDVQEI 176
Query: 397 VGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEK 456
++Q ++FSAT+ +++ + R+ + DP+ + V + Q +V D EK
Sbjct: 177 FRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEK 236
Query: 457 LPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKF 516
L + L +++ V++F + L ++ F A A+H Q R+ Q+F
Sbjct: 237 NRKLFDLL-DVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQF 295
Query: 517 KSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVT 576
K +L+AT++ RG+DI+ + N+D+ D D ++HR+ R GR G K G A T V+
Sbjct: 296 KDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTK-GLAITFVS 354
>pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain
pdb|3IUY|B Chain B, Crystal Structure Of Ddx53 Dead-Box Domain
Length = 228
Score = 176 bits (445), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 92/217 (42%), Positives = 139/217 (64%), Gaps = 5/217 (2%)
Query: 220 VPRPVKTFEDCGFS--TQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTA 277
+P+P F+D F L+ +I + G KPT IQ QA PIIL G D+I +A+TG+GKT
Sbjct: 14 IPKPTCRFKD-AFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTL 72
Query: 278 AFVLPMIVHIMDQP-ELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGM 336
++++P +H+ QP ++ GP ++ PTRELA + E K++ G++ +YGG
Sbjct: 73 SYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGR 131
Query: 337 SKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSI 396
++ Q +++ G +I+IATPGRL D+ ++ + +TYLV+DEAD+M D+ FEPQIR I
Sbjct: 132 NRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKI 191
Query: 397 VGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTV 433
+ +RPDRQT++ SAT P V +LA L DP+ V V
Sbjct: 192 LLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVYV 228
>pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56
Length = 391
Score = 175 bits (443), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 107/354 (30%), Positives = 186/354 (52%), Gaps = 12/354 (3%)
Query: 227 FEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVH 286
F D +L+ AI G+E P+ +Q + +P + G D++ AK+G GKTA FVL +
Sbjct: 10 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL-- 67
Query: 287 IMDQPELQKEEGPIGV-ICAPTRELAHQIYLETKKFAKSH-GIRVSAVYGGMSKLDQFKE 344
+L+ G + V + TRELA QI E ++F+K ++V+ +GG+S +
Sbjct: 68 ----QQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV 123
Query: 345 LKAGC-EIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFD-LGFEPQIRSIVGQIRP 402
LK C IV+ TPGR++ + + K+L + + + +LDE D+M + L ++ I
Sbjct: 124 LKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH 183
Query: 403 DRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLE 462
++Q ++FSAT+ +++ + R+ + DP+ + V + Q +V D EK L +
Sbjct: 184 EKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFD 243
Query: 463 KLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYH 522
L +++ V++F + L ++ F A A+H Q R+ Q+FK
Sbjct: 244 LL-DVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR 302
Query: 523 VLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVT 576
+L+AT++ RG+DI+ + N+D+ D D ++HR+ R GR G K G A T V+
Sbjct: 303 ILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTK-GLAITFVS 355
>pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp
Length = 386
Score = 175 bits (443), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 107/354 (30%), Positives = 186/354 (52%), Gaps = 12/354 (3%)
Query: 227 FEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVH 286
F D +L+ AI G+E P+ +Q + +P + G D++ AK+G GKTA FVL +
Sbjct: 10 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL-- 67
Query: 287 IMDQPELQKEEGPIGV-ICAPTRELAHQIYLETKKFAKSH-GIRVSAVYGGMSKLDQFKE 344
+L+ G + V + TRELA QI E ++F+K ++V+ +GG+S +
Sbjct: 68 ----QQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV 123
Query: 345 LKAGC-EIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFD-LGFEPQIRSIVGQIRP 402
LK C IV+ TPGR++ + + K+L + + + +LDE D+M + L ++ I
Sbjct: 124 LKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH 183
Query: 403 DRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLE 462
++Q ++FSAT+ +++ + R+ + DP+ + V + Q +V D EK L +
Sbjct: 184 EKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFD 243
Query: 463 KLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYH 522
L +++ V++F + L ++ F A A+H Q R+ Q+FK
Sbjct: 244 LL-DVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR 302
Query: 523 VLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVT 576
+L+AT++ RG+DI+ + N+D+ D D ++HR+ R GR G K G A T V+
Sbjct: 303 ILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTK-GLAITFVS 355
>pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3
Length = 395
Score = 174 bits (440), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 118/371 (31%), Positives = 199/371 (53%), Gaps = 32/371 (8%)
Query: 225 KTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLP 282
K+F++ G + +L+ I ++KP+ IQ +ALP++L R++I +++G+GKTAAF L
Sbjct: 5 KSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLT 64
Query: 283 MIVHIMDQPELQKEEGPIGVICAPTRELAHQ---IYLETKKFAKSHGIRVSAVYGGMSKL 339
M+ + PE + P + AP+RELA Q + E KF K + +
Sbjct: 65 MLTRV--NPE---DASPQAICLAPSRELARQTLEVVQEMGKFTK--------ITSQLIVP 111
Query: 340 DQF-KELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDL-GFEPQIRSIV 397
D F K + ++++ TPG ++D+++ K + + ++ VLDEAD M D G Q +
Sbjct: 112 DSFEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVK 171
Query: 398 GQIRPDRQTLLFSATMPRKVEKLAREIL--SDPVRVTVGEVGMANEDITQVVHVIPSDAE 455
+ D Q +LFSAT V + A++I+ ++ + + EV + + I Q+ ++A+
Sbjct: 172 RFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNV--DAIKQLYMDCKNEAD 229
Query: 456 KLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQK 515
K L E L G++ G ++F + K T + + +L +G + + LHGD R ++
Sbjct: 230 KFDVLTE-LYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDD 288
Query: 516 FKSGVYHVLIATDVAARGLDIKSIKSVVNFDIAR------DMDMHVHRIGRTGRAGDKDG 569
F+ G VLI T+V ARG+DI ++ VVN+D+ D ++HRIGRTGR G K G
Sbjct: 289 FREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRK-G 347
Query: 570 TAYTLVTQKEA 580
A + V K +
Sbjct: 348 VAISFVHDKNS 358
>pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3
pdb|3RRM|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Nup159, Gle1 H337r, Ip6
And Adp
pdb|3RRN|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Gle1 H337r And Ip6
Length = 395
Score = 173 bits (438), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 118/371 (31%), Positives = 199/371 (53%), Gaps = 32/371 (8%)
Query: 225 KTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLP 282
K+F++ G + +L+ I ++KP+ IQ +ALP++L R++I +++G+GKTAAF L
Sbjct: 5 KSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLT 64
Query: 283 MIVHIMDQPELQKEEGPIGVICAPTRELAHQ---IYLETKKFAKSHGIRVSAVYGGMSKL 339
M+ + PE + P + AP+RELA Q + E KF K + +
Sbjct: 65 MLTRV--NPE---DASPQAICLAPSRELARQTLEVVQEMGKFTK--------ITSQLIVP 111
Query: 340 DQF-KELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDL-GFEPQIRSIV 397
D F K + ++++ TPG ++D+++ K + + ++ VLDEAD M D G Q +
Sbjct: 112 DSFEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVK 171
Query: 398 GQIRPDRQTLLFSATMPRKVEKLAREIL--SDPVRVTVGEVGMANEDITQVVHVIPSDAE 455
+ D Q +LFSAT V + A++I+ ++ + + EV + + I Q+ ++A+
Sbjct: 172 RFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNV--DAIKQLYMDCKNEAD 229
Query: 456 KLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQK 515
K L E L G++ G ++F + K T + + +L +G + + LHGD R ++
Sbjct: 230 KFDVLTE-LYGVMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDD 288
Query: 516 FKSGVYHVLIATDVAARGLDIKSIKSVVNFDIAR------DMDMHVHRIGRTGRAGDKDG 569
F+ G VLI T+V ARG+DI ++ VVN+D+ D ++HRIGRTGR G K G
Sbjct: 289 FREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRK-G 347
Query: 570 TAYTLVTQKEA 580
A + V K +
Sbjct: 348 VAISFVHDKNS 358
>pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In
Complex With Amp
Length = 249
Score = 172 bits (436), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 90/210 (42%), Positives = 131/210 (62%), Gaps = 6/210 (2%)
Query: 225 KTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMI 284
KTF+D G + L A + G+ KPT IQ +A+P+ L GRDIIG+A+TGSGKT AF LP++
Sbjct: 43 KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL 102
Query: 285 VHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE 344
+++ P+ ++ PTRELA QI + + S G++ + + GG+ + Q
Sbjct: 103 NALLETPQRL-----FALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLA 157
Query: 345 LKAGCEIVIATPGRLIDMLK-MKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPD 403
L I+IATPGRLID L+ K + + YLV+DEADR+ ++ FE ++ I+ I D
Sbjct: 158 LAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRD 217
Query: 404 RQTLLFSATMPRKVEKLAREILSDPVRVTV 433
R+T LFSATM +KV+KL R L +PV+ V
Sbjct: 218 RKTFLFSATMTKKVQKLQRAALKNPVKCAV 247
>pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSO|B Chain B, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|B Chain B, Crystal Structure Of A Translation Initiation Complex
Length = 395
Score = 171 bits (434), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 105/339 (30%), Positives = 183/339 (53%), Gaps = 7/339 (2%)
Query: 222 RPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVL 281
+ V F+D L+ + G+E+P++IQ +A+ I+ G D++ A++G+GKT F +
Sbjct: 19 KVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSI 78
Query: 282 PMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ 341
+ I + P ++ APTRELA QI A I+V A GG S ++
Sbjct: 79 AALQRIDTSVK-----APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVED 133
Query: 342 FKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIR 401
+ L+ +IV+ TPGR+ D ++ + ++ +LDEAD M GF+ QI I +
Sbjct: 134 AEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLP 192
Query: 402 PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLL 461
P Q +L SATMP V ++ + + +PVR+ V + + E I Q + + K L
Sbjct: 193 PTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLT 252
Query: 462 EKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVY 521
+ L I ++F + + V+E+ ++L F +A++ D Q R I+++F+SG
Sbjct: 253 D-LYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSS 311
Query: 522 HVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGR 560
+LI+TD+ ARG+D++ + V+N+D+ + + ++HRIGR
Sbjct: 312 RILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGR 350
>pdb|1FUU|A Chain A, Yeast Initiation Factor 4a
pdb|1FUU|B Chain B, Yeast Initiation Factor 4a
Length = 394
Score = 164 bits (415), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 103/337 (30%), Positives = 177/337 (52%), Gaps = 7/337 (2%)
Query: 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPM 283
V F+D L+ + G+E+P++IQ +A+ I+ G D++ A++G+GKT F +
Sbjct: 20 VYKFDDXELDENLLRGVFGYGFEEPSAIQQRAIXPIIEGHDVLAQAQSGTGKTGTFSIAA 79
Query: 284 IVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK 343
+ I + P + APTRELA QI A I+V A GG S ++ +
Sbjct: 80 LQRIDTSVK-----APQALXLAPTRELALQIQKVVXALAFHXDIKVHACIGGTSFVEDAE 134
Query: 344 ELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPD 403
L+ +IV+ TPGR+ D ++ + ++ +LDEAD GF+ QI I + P
Sbjct: 135 GLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKXFILDEADEXLSSGFKEQIYQIFTLLPPT 193
Query: 404 RQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEK 463
Q +L SAT P V ++ + +PVR+ V + + E I Q + + K L +
Sbjct: 194 TQVVLLSATXPNDVLEVTTKFXRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTD- 252
Query: 464 LPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHV 523
L I ++F + + V+E+ ++L F +A++ D Q R I ++F+SG +
Sbjct: 253 LYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIXKEFRSGSSRI 312
Query: 524 LIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGR 560
LI+TD+ ARG+D++ + V+N+D+ + + ++HRIGR
Sbjct: 313 LISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGR 349
>pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|D Chain D, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 479
Score = 162 bits (410), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 117/372 (31%), Positives = 198/372 (53%), Gaps = 29/372 (7%)
Query: 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILS--GRDIIGIAKTGSGKTAAFVL 281
VK+FE+ QL+ + G+ +P+ IQ ALP++L+ +++I +++G+GKTAAFVL
Sbjct: 91 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 150
Query: 282 PMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG-----IRVSAVYGGM 336
M+ + +P + P + +PT ELA L+T K + G ++++ G
Sbjct: 151 AMLSQV--EP---ANKYPQCLCLSPTYELA----LQTGKVIEQMGKFYPELKLAYAVRG- 200
Query: 337 SKLDQFKELKAGCEIVIATPGRLIDML-KMKALTMSRVTYLVLDEADRMFDL-GFEPQIR 394
+KL++ +++ +IVI TPG ++D K+K + ++ VLDEAD M G + Q
Sbjct: 201 NKLERGQKISE--QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSI 258
Query: 395 SIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDA 454
I + + Q LLFSAT V K A++++ DP + + + I Q + S
Sbjct: 259 RIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRD 318
Query: 455 EKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQ 514
EK L L G I ++F + T + ++L+++G + A L G+ R +++
Sbjct: 319 EKFQALC-NLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIE 377
Query: 515 KFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMD------MHVHRIGRTGRAGDKD 568
+F+ G VL+ T+V ARG+D++ + V+NFD+ D D ++HRIGRTGR G K
Sbjct: 378 RFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFG-KR 436
Query: 569 GTAYTLVTQKEA 580
G A +V K +
Sbjct: 437 GLAVNMVDSKHS 448
>pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An
Atp-analogue And Rna
Length = 424
Score = 162 bits (410), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 117/372 (31%), Positives = 198/372 (53%), Gaps = 29/372 (7%)
Query: 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILS--GRDIIGIAKTGSGKTAAFVL 281
VK+FE+ QL+ + G+ +P+ IQ ALP++L+ +++I +++G+GKTAAFVL
Sbjct: 40 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 99
Query: 282 PMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG-----IRVSAVYGGM 336
M+ + +P + P + +PT ELA L+T K + G ++++ G
Sbjct: 100 AMLSQV--EP---ANKYPQCLCLSPTYELA----LQTGKVIEQMGKFYPELKLAYAVRG- 149
Query: 337 SKLDQFKELKAGCEIVIATPGRLIDML-KMKALTMSRVTYLVLDEADRMFDL-GFEPQIR 394
+KL++ +++ +IVI TPG ++D K+K + ++ VLDEAD M G + Q
Sbjct: 150 NKLERGQKISE--QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSI 207
Query: 395 SIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDA 454
I + + Q LLFSAT V K A++++ DP + + + I Q + S
Sbjct: 208 RIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRD 267
Query: 455 EKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQ 514
EK L L G I ++F + T + ++L+++G + A L G+ R +++
Sbjct: 268 EKFQALC-NLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIE 326
Query: 515 KFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMD------MHVHRIGRTGRAGDKD 568
+F+ G VL+ T+V ARG+D++ + V+NFD+ D D ++HRIGRTGR G K
Sbjct: 327 RFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFG-KR 385
Query: 569 GTAYTLVTQKEA 580
G A +V K +
Sbjct: 386 GLAVNMVDSKHS 397
>pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
pdb|3EWS|B Chain B, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
Length = 445
Score = 162 bits (410), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 117/372 (31%), Positives = 198/372 (53%), Gaps = 29/372 (7%)
Query: 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILS--GRDIIGIAKTGSGKTAAFVL 281
VK+FE+ QL+ + G+ +P+ IQ ALP++L+ +++I +++G+GKTAAFVL
Sbjct: 61 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 120
Query: 282 PMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG-----IRVSAVYGGM 336
M+ + +P + P + +PT ELA L+T K + G ++++ G
Sbjct: 121 AMLSQV--EP---ANKYPQCLCLSPTYELA----LQTGKVIEQMGKFYPELKLAYAVRG- 170
Query: 337 SKLDQFKELKAGCEIVIATPGRLIDML-KMKALTMSRVTYLVLDEADRMFDL-GFEPQIR 394
+KL++ +++ +IVI TPG ++D K+K + ++ VLDEAD M G + Q
Sbjct: 171 NKLERGQKISE--QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSI 228
Query: 395 SIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDA 454
I + + Q LLFSAT V K A++++ DP + + + I Q + S
Sbjct: 229 RIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRD 288
Query: 455 EKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQ 514
EK L L G I ++F + T + ++L+++G + A L G+ R +++
Sbjct: 289 EKFQALC-NLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIE 347
Query: 515 KFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMD------MHVHRIGRTGRAGDKD 568
+F+ G VL+ T+V ARG+D++ + V+NFD+ D D ++HRIGRTGR G K
Sbjct: 348 RFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFG-KR 406
Query: 569 GTAYTLVTQKEA 580
G A +V K +
Sbjct: 407 GLAVNMVDSKHS 418
>pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
pdb|3FHT|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
Length = 412
Score = 162 bits (409), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 117/372 (31%), Positives = 198/372 (53%), Gaps = 29/372 (7%)
Query: 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILS--GRDIIGIAKTGSGKTAAFVL 281
VK+FE+ QL+ + G+ +P+ IQ ALP++L+ +++I +++G+GKTAAFVL
Sbjct: 24 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 83
Query: 282 PMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG-----IRVSAVYGGM 336
M+ + +P + P + +PT ELA L+T K + G ++++ G
Sbjct: 84 AMLSQV--EP---ANKYPQCLCLSPTYELA----LQTGKVIEQMGKFYPELKLAYAVRG- 133
Query: 337 SKLDQFKELKAGCEIVIATPGRLIDML-KMKALTMSRVTYLVLDEADRMFDL-GFEPQIR 394
+KL++ +++ +IVI TPG ++D K+K + ++ VLDEAD M G + Q
Sbjct: 134 NKLERGQKISE--QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSI 191
Query: 395 SIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDA 454
I + + Q LLFSAT V K A++++ DP + + + I Q + S
Sbjct: 192 RIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRD 251
Query: 455 EKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQ 514
EK L L G I ++F + T + ++L+++G + A L G+ R +++
Sbjct: 252 EKFQALC-NLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIE 310
Query: 515 KFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMD------MHVHRIGRTGRAGDKD 568
+F+ G VL+ T+V ARG+D++ + V+NFD+ D D ++HRIGRTGR G K
Sbjct: 311 RFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFG-KR 369
Query: 569 GTAYTLVTQKEA 580
G A +V K +
Sbjct: 370 GLAVNMVDSKHS 381
>pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And
Amp-Pnp
Length = 579
Score = 160 bits (405), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 123/383 (32%), Positives = 198/383 (51%), Gaps = 38/383 (9%)
Query: 235 QLMHAISKQGYEKPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPE 292
++ AI++ + T +Q + + ILS D+I AKTG+GKT AF++P+ H+++ +
Sbjct: 31 EIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINT-K 89
Query: 293 LQKEEGPIGVICAPTRELAHQIYLETKKFAK-SHGIR----VSAVYG-----GMSKLDQF 342
+ VI APTR+LA QI E KK ++G++ VS V G M+K+++
Sbjct: 90 FDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKL 149
Query: 343 KELKAGCEIVIATPGRLIDMLKMKALTMSR-VTYLVLDEADRMFDLGFEPQIRSIVGQIR 401
+ IVIATPGRLID+L+ + R V Y VLDEADR+ ++GF + +I G +
Sbjct: 150 RP-----NIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILN 204
Query: 402 PDR-------QTLLFSATMPRKVEKLAREILSDPVRVTVGEVGM----ANEDITQVVHVI 450
+TLLFSAT+ KV+KLA I++ + + V A+E I Q V +
Sbjct: 205 EKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVIS 264
Query: 451 PSDAEKLPWLLEKLPGMIDDGD----VLVFASKKTTVDEIESQLA---QKGFKAAALHGD 503
A + +E + I + D ++FA + S L +K HG
Sbjct: 265 EKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGK 324
Query: 504 KDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGR 563
Q R ++++FK +L+ TDV ARG+D ++ V+ + ++ ++HRIGRT R
Sbjct: 325 ITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTAR 384
Query: 564 AGDKDGTAYTLVTQKEARFAGEL 586
+G K+G++ + + E F EL
Sbjct: 385 SG-KEGSSVLFICKDELPFVREL 406
>pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp
pdb|3I5Y|A Chain A, Structure Of Mss116p Bound To Ssrna Containing A Single
5-Bru And Amp- Pnp
pdb|3I61|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-beryllium
Fluoride
pdb|3I62|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-aluminum
Fluoride
Length = 563
Score = 159 bits (401), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 123/383 (32%), Positives = 198/383 (51%), Gaps = 38/383 (9%)
Query: 235 QLMHAISKQGYEKPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPE 292
++ AI++ + T +Q + + ILS D+I AKTG+GKT AF++P+ H+++ +
Sbjct: 82 EIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINT-K 140
Query: 293 LQKEEGPIGVICAPTRELAHQIYLETKKFAK-SHGIR----VSAVYG-----GMSKLDQF 342
+ VI APTR+LA QI E KK ++G++ VS V G M+K+++
Sbjct: 141 FDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKL 200
Query: 343 KELKAGCEIVIATPGRLIDMLKMKALTMSR-VTYLVLDEADRMFDLGFEPQIRSIVGQIR 401
+ IVIATPGRLID+L+ + R V Y VLDEADR+ ++GF + +I G +
Sbjct: 201 RP-----NIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILN 255
Query: 402 PDR-------QTLLFSATMPRKVEKLAREILSDPVRVTVGEVGM----ANEDITQVVHVI 450
+TLLFSAT+ KV+KLA I++ + + V A+E I Q V +
Sbjct: 256 EKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVIS 315
Query: 451 PSDAEKLPWLLEKLPGMIDDGD----VLVFASKKTTVDEIESQLA---QKGFKAAALHGD 503
A + +E + I + D ++FA + S L +K HG
Sbjct: 316 EKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGK 375
Query: 504 KDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGR 563
Q R ++++FK +L+ TDV ARG+D ++ V+ + ++ ++HRIGRT R
Sbjct: 376 ITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTAR 435
Query: 564 AGDKDGTAYTLVTQKEARFAGEL 586
+G K+G++ + + E F EL
Sbjct: 436 SG-KEGSSVLFICKDELPFVREL 457
>pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion)
Bound To Ssrna And Amp-Pnp
Length = 512
Score = 158 bits (399), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 123/383 (32%), Positives = 198/383 (51%), Gaps = 38/383 (9%)
Query: 235 QLMHAISKQGYEKPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPE 292
++ AI++ + T +Q + + ILS D+I AKTG+GKT AF++P+ H+++ +
Sbjct: 31 EIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINT-K 89
Query: 293 LQKEEGPIGVICAPTRELAHQIYLETKKFAK-SHGIR----VSAVYG-----GMSKLDQF 342
+ VI APTR+LA QI E KK ++G++ VS V G M+K+++
Sbjct: 90 FDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKL 149
Query: 343 KELKAGCEIVIATPGRLIDMLKMKALTMSR-VTYLVLDEADRMFDLGFEPQIRSIVGQIR 401
+ IVIATPGRLID+L+ + R V Y VLDEADR+ ++GF + +I G +
Sbjct: 150 RP-----NIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILN 204
Query: 402 PDR-------QTLLFSATMPRKVEKLAREILSDPVRVTVGEVGM----ANEDITQVVHVI 450
+TLLFSAT+ KV+KLA I++ + + V A+E I Q V +
Sbjct: 205 EKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVIS 264
Query: 451 PSDAEKLPWLLEKLPGMIDDGD----VLVFASKKTTVDEIESQLA---QKGFKAAALHGD 503
A + +E + I + D ++FA + S L +K HG
Sbjct: 265 EKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGK 324
Query: 504 KDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGR 563
Q R ++++FK +L+ TDV ARG+D ++ V+ + ++ ++HRIGRT R
Sbjct: 325 ITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTAR 384
Query: 564 AGDKDGTAYTLVTQKEARFAGEL 586
+G K+G++ + + E F EL
Sbjct: 385 SG-KEGSSVLFICKDELPFVREL 406
>pdb|3FHO|A Chain A, Structure Of S. Pombe Dbp5
pdb|3FHO|B Chain B, Structure Of S. Pombe Dbp5
Length = 508
Score = 158 bits (399), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 118/349 (33%), Positives = 179/349 (51%), Gaps = 40/349 (11%)
Query: 251 IQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHI-MDQPELQKEEGPIGVICAPT 307
IQ +ALP++LS R++IG +++G+GKTAAF L M+ + P+ P + AP+
Sbjct: 145 IQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPK------PQAICLAPS 198
Query: 308 RELAHQI---------YLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGR 358
RELA QI Y E K + GI+ S G +K+D +IVI TPG
Sbjct: 199 RELARQIMDVVTEMGKYTEVKT---AFGIKDSVPKG--AKID--------AQIVIGTPGT 245
Query: 359 LIDMLKMKALTMSRVTYLVLDEADRMFDL-GFEPQIRSIVGQIRPDRQTLLFSATMPRKV 417
++D++K + L + VLDEAD M D G Q I + + Q +LFSAT +V
Sbjct: 246 VMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERV 305
Query: 418 EKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFA 477
EK A + + + ++ E I Q+ S+ K L+E L G++ G ++F
Sbjct: 306 EKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVE-LYGLLTIGQSIIFC 364
Query: 478 SKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIK 537
KK T +EI ++ G A L G+ + A R I+ F+ G VL+ T+V ARG+D+
Sbjct: 365 KKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVS 424
Query: 538 SIKSVVNFDIARDM------DMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580
+ VVN+D+ D ++HRIGRTGR G + G + V K++
Sbjct: 425 QVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFG-RVGVSINFVHDKKS 472
>pdb|2GXQ|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 1
pdb|2GXS|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXS|B Chain B, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXU|A Chain A, Hera N-Terminal Domain In Complex With Orthophosphate,
Crystal Form 1
Length = 207
Score = 157 bits (398), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 84/207 (40%), Positives = 122/207 (58%), Gaps = 4/207 (1%)
Query: 227 FEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVH 286
F+D +++ A+ +G PT IQ ALP+ L G+D+IG A+TG+GKT AF LP+
Sbjct: 3 FKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAER 62
Query: 287 IMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELK 346
+ P ++ P ++ PTRELA Q+ E A ++V AVYGG Q + L
Sbjct: 63 L--APSQERGRKPRALVLTPTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALL 118
Query: 347 AGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQT 406
G + V+ATPGR +D L+ L +SRV VLDEAD M +GFE ++ +++ P RQT
Sbjct: 119 RGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQT 178
Query: 407 LLFSATMPRKVEKLAREILSDPVRVTV 433
LLFSAT+P ++LA + +PV + V
Sbjct: 179 LLFSATLPSWAKRLAERYMKNPVLINV 205
>pdb|3MWJ|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWJ|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWK|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWK|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWL|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3MWL|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3NBF|A Chain A, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|B Chain B, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|C Chain C, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|D Chain D, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NEJ|A Chain A, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
pdb|3NEJ|B Chain B, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
Length = 207
Score = 156 bits (394), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 83/207 (40%), Positives = 122/207 (58%), Gaps = 4/207 (1%)
Query: 227 FEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVH 286
F+D +++ A+ +G PT I+ ALP+ L G+D+IG A+TG+GKT AF LP+
Sbjct: 3 FKDFPLKPEILEALHGRGLTTPTPIEAAALPLALEGKDLIGQARTGTGKTLAFALPIAER 62
Query: 287 IMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELK 346
+ P ++ P ++ PTRELA Q+ E A ++V AVYGG Q + L
Sbjct: 63 L--APSQERGRKPRALVLTPTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALL 118
Query: 347 AGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQT 406
G + V+ATPGR +D L+ L +SRV VLDEAD M +GFE ++ +++ P RQT
Sbjct: 119 RGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQT 178
Query: 407 LLFSATMPRKVEKLAREILSDPVRVTV 433
LLFSAT+P ++LA + +PV + V
Sbjct: 179 LLFSATLPSWAKRLAERYMKNPVLINV 205
>pdb|3LY5|A Chain A, Ddx18 Dead-Domain
pdb|3LY5|B Chain B, Ddx18 Dead-Domain
Length = 262
Score = 133 bits (334), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 77/204 (37%), Positives = 116/204 (56%), Gaps = 9/204 (4%)
Query: 227 FEDCGFST-------QLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAF 279
FED F++ + AI + G+ T IQ +++ +L GRD++ AKTGSGKT AF
Sbjct: 49 FEDTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAF 108
Query: 280 VLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKL 339
++P V ++ + G +I +PTRELA Q + K+ H + GG ++
Sbjct: 109 LIPA-VELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRS 167
Query: 340 DQFKELKAGCEIVIATPGRLID-MLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVG 398
+ ++L G I++ATPGRL+D M + LV+DEADR+ D+GFE +++ I+
Sbjct: 168 AEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIK 227
Query: 399 QIRPDRQTLLFSATMPRKVEKLAR 422
+ RQT+LFSAT RKVE LAR
Sbjct: 228 LLPTRRQTMLFSATQTRKVEDLAR 251
>pdb|3BOR|A Chain A, Crystal Structure Of The Deadc Domain Of Human Translation
Initiation Factor 4a-2
Length = 237
Score = 130 bits (326), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 116/211 (54%), Gaps = 6/211 (2%)
Query: 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPM 283
V F+D L+ I G+EKP++IQ +A+ + G D+I A++G+GKTA F
Sbjct: 29 VDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFA--- 85
Query: 284 IVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK 343
+ I+ Q E++ +E ++ APTRELA QI G A GG + ++ +
Sbjct: 86 -ISILQQLEIEFKETQ-ALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQ 143
Query: 344 ELKAGC-EIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRP 402
+L+A IV+ TPGR+ DML + L+ + VLDEAD M GF+ QI I ++
Sbjct: 144 KLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNT 203
Query: 403 DRQTLLFSATMPRKVEKLAREILSDPVRVTV 433
Q +L SATMP V ++ ++ + DP+R+ V
Sbjct: 204 SIQVVLLSATMPTDVLEVTKKFMRDPIRILV 234
>pdb|1VEC|A Chain A, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
pdb|1VEC|B Chain B, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
Length = 206
Score = 126 bits (317), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 117/207 (56%), Gaps = 6/207 (2%)
Query: 227 FEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVH 286
FED +L+ I + G+EKP+ IQ +++PI LSGRDI+ AK G+GK+ A+++P+
Sbjct: 5 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPL--- 61
Query: 287 IMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG-IRVSAVYGGMSKLDQFKEL 345
+++ +L+K+ VI PTRELA Q+ + +K G +V A GG + D L
Sbjct: 62 -LERLDLKKDNIQAMVI-VPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRL 119
Query: 346 KAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 405
+VIATPGR++D++K + V +VLDEAD++ F + I+ + +RQ
Sbjct: 120 DDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQ 179
Query: 406 TLLFSATMPRKVEKLAREILSDPVRVT 432
LL+SAT P V+K L P +
Sbjct: 180 ILLYSATFPLSVQKFMNSHLEKPYEIN 206
>pdb|2PL3|A Chain A, Human Dead-Box Rna Helicase Ddx10, Dead Domain In Complex
With Adp
Length = 236
Score = 125 bits (314), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 117/213 (54%), Gaps = 3/213 (1%)
Query: 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPM 283
+ F D S + + + + Y T IQ Q + + L G+D++G AKTGSGKT AF++P
Sbjct: 24 ITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVP- 82
Query: 284 IVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK 343
++ + + + +G +I +PTRELA+Q + +K K+H + GG L
Sbjct: 83 VLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGG-KDLKHEA 141
Query: 344 ELKAGCEIVIATPGRLID-MLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRP 402
E I++ TPGRL+ M + + + + LVLDEADR+ D+GF + +++ +
Sbjct: 142 ERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPK 201
Query: 403 DRQTLLFSATMPRKVEKLAREILSDPVRVTVGE 435
RQTLLFSAT + V+ LAR L +P V V E
Sbjct: 202 KRQTLLFSATQTKSVKDLARLSLKNPEYVWVHE 234
>pdb|3DKP|A Chain A, Human Dead-Box Rna-Helicase Ddx52, Conserved Domain I In
Complex With Adp
Length = 245
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 132/233 (56%), Gaps = 15/233 (6%)
Query: 213 IRVSGFDVPRPVKTFE----DCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGI 268
I V G D+P P+ TF+ + +++L+ I G++ PT IQ QA+P++L GR+++
Sbjct: 13 IHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLAS 72
Query: 269 AKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIR 328
A TGSGKT AF +P+++ + QP +G +I +PTRELA QI+ E K ++ G R
Sbjct: 73 APTGSGKTLAFSIPILMQ-LKQPA---NKGFRALIISPTRELASQIHRELIKISEGTGFR 128
Query: 329 VSAVYGGMSKLDQF-KELKAGCEIVIATPGRLIDMLKM--KALTMSRVTYLVLDEADRMF 385
+ ++ +F + +I++ TP RLI +LK + ++ V +LV+DE+D++F
Sbjct: 129 IHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLF 188
Query: 386 D---LGFEPQIRSIVGQIRPDR-QTLLFSATMPRKVEKLAREILSDPVRVTVG 434
+ GF Q+ SI + + +FSAT VE+ + L + + V++G
Sbjct: 189 EDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIG 241
>pdb|2G9N|A Chain A, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
pdb|2G9N|B Chain B, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
Length = 221
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/211 (34%), Positives = 107/211 (50%), Gaps = 6/211 (2%)
Query: 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPM 283
V +F+D S L+ I G+E P++IQ +A+ + G D+I A++G+G TA F
Sbjct: 14 VDSFDDMNLSESLLRGIYAYGFEXPSAIQQRAILPCIXGYDVIAQAQSGTGXTATFA--- 70
Query: 284 IVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK 343
+ I+ Q EL ++ APTRELA QI G A GG + + +
Sbjct: 71 -ISILQQIELDLXATQ-ALVLAPTRELAQQIQXVVMALGDYMGASCHACIGGTNVRAEVQ 128
Query: 344 ELKA-GCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRP 402
L+ I++ TPGR+ DML + L+ + VLDEAD M GF QI I +
Sbjct: 129 XLQMEAPHIIVGTPGRVFDMLNRRYLSPXYIXMFVLDEADEMLSRGFXDQIYDIFQXLNS 188
Query: 403 DRQTLLFSATMPRKVEKLAREILSDPVRVTV 433
+ Q +L SATMP V ++ + DP+R+ V
Sbjct: 189 NTQVVLLSATMPSDVLEVTXXFMRDPIRILV 219
>pdb|1QVA|A Chain A, Yeast Initiation Factor 4a N-Terminal Domain
Length = 223
Score = 119 bits (299), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 113/210 (53%), Gaps = 6/210 (2%)
Query: 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPM 283
V F+D QL+ + G+E+P++IQ +A+ I+ G D++ A++G+GKT F +
Sbjct: 20 VYKFDDMELDEQLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAA 79
Query: 284 IVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK 343
+ I + P ++ APTRELA QI A I+V A GG S ++ +
Sbjct: 80 LQRIDT-----SVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAE 134
Query: 344 ELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPD 403
L+ +IV+ TPGR+ D ++ + ++ +LDEAD M GF+ QI I + P
Sbjct: 135 GLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPT 193
Query: 404 RQTLLFSATMPRKVEKLAREILSDPVRVTV 433
Q +L SATMP V ++ + + +PVR+ V
Sbjct: 194 TQVVLLSATMPNDVLEVTTKFMRNPVRILV 223
>pdb|2JGN|A Chain A, Ddx3 Helicase Domain
pdb|2JGN|B Chain B, Ddx3 Helicase Domain
pdb|2JGN|C Chain C, Ddx3 Helicase Domain
Length = 185
Score = 119 bits (297), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 66/171 (38%), Positives = 101/171 (59%), Gaps = 2/171 (1%)
Query: 437 GMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFK 496
G +E+ITQ V V +++K +LL+ L D LVF K D +E L +G+
Sbjct: 14 GSTSENITQKV-VWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYA 72
Query: 497 AAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVH 556
++HGD+ Q R E L +F+SG +L+AT VAARGLDI ++K V+NFD+ D++ +VH
Sbjct: 73 CTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVH 132
Query: 557 RIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLAMK 607
RIGRTGR G+ G A + ++ +L++ L+ A Q V L ++A +
Sbjct: 133 RIGRTGRVGNL-GLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMAYE 182
>pdb|1QDE|A Chain A, Crystal Structure Of The Atpase Domain Of Translation
Initiation Factor 4a From Saccharomyces Cerevisiae-The
Prototype Of The Dead Box Protein Family
Length = 224
Score = 118 bits (296), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 112/210 (53%), Gaps = 6/210 (2%)
Query: 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPM 283
V F+D L+ + G+E+P++IQ +A+ I+ G D++ A++G+GKT F +
Sbjct: 13 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAA 72
Query: 284 IVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK 343
+ I + P ++ APTRELA QI A I+V A GG S ++ +
Sbjct: 73 LQRIDT-----SVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAE 127
Query: 344 ELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPD 403
L+ +IV+ TPGR+ D ++ + ++ +LDEAD M GF+ QI I + P
Sbjct: 128 GLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPT 186
Query: 404 RQTLLFSATMPRKVEKLAREILSDPVRVTV 433
Q +L SATMP V ++ + + +PVR+ V
Sbjct: 187 TQVVLLSATMPNDVLEVTTKFMRNPVRILV 216
>pdb|1Q0U|A Chain A, Crystal Structure Of The Bstdead N-Terminal Domain
pdb|1Q0U|B Chain B, Crystal Structure Of The Bstdead N-Terminal Domain
Length = 219
Score = 116 bits (290), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 78/213 (36%), Positives = 111/213 (52%), Gaps = 9/213 (4%)
Query: 227 FEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVH 286
F F ++ AI + KPT IQ + +P L G +G ++TG+GKT A++LP+
Sbjct: 6 FTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESXVGQSQTGTGKTHAYLLPIXEK 65
Query: 287 IMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK----SHGIRVSAVYGGMSKLDQF 342
I +PE + + VI APTRELA QIY ET K K I + GG K
Sbjct: 66 I--KPERAEVQA---VITAPTRELATQIYHETLKITKFCPKDRXIVARCLIGGTDKQKAL 120
Query: 343 KELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRP 402
++L IVI TPGR+ D ++ +AL + LV+DEAD D GF + I +
Sbjct: 121 EKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLXLDXGFITDVDQIAARXPK 180
Query: 403 DRQTLLFSATMPRKVEKLAREILSDPVRVTVGE 435
D Q L+FSAT+P K++ ++ +P V V E
Sbjct: 181 DLQXLVFSATIPEKLKPFLKKYXENPTFVHVLE 213
>pdb|1T6N|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Uap56
pdb|1T6N|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Uap56
Length = 220
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 118/210 (56%), Gaps = 8/210 (3%)
Query: 227 FEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVH 286
F D +L+ AI G+E P+ +Q + +P + G D++ AK+G GKTA FVL
Sbjct: 16 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLA---- 71
Query: 287 IMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH-GIRVSAVYGGMSKLDQFKEL 345
+ Q E + + V+C TRELA QI E ++F+K ++V+ +GG+S + L
Sbjct: 72 TLQQLEPVTGQVSVLVMCH-TRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVL 130
Query: 346 KAGC-EIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFD-LGFEPQIRSIVGQIRPD 403
K C IV+ TPGR++ + + K+L + + + +LDE D+M + L ++ I +
Sbjct: 131 KKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHE 190
Query: 404 RQTLLFSATMPRKVEKLAREILSDPVRVTV 433
+Q ++FSAT+ +++ + R+ + DP+ + V
Sbjct: 191 KQVMMFSATLSKEIRPVCRKFMQDPMEIFV 220
>pdb|2P6N|A Chain A, Human Dead-box Rna Helicase Ddx41, Helicase Domain
pdb|2P6N|B Chain B, Human Dead-box Rna Helicase Ddx41, Helicase Domain
Length = 191
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/142 (41%), Positives = 89/142 (62%), Gaps = 4/142 (2%)
Query: 436 VGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGF 495
+G A+ D+ Q V + +A K+ +LLE L VL+FA KK VD I L KG
Sbjct: 23 MGAASLDVIQEVEYVKEEA-KMVYLLECLQKT--PPPVLIFAEKKADVDAIHEYLLLKGV 79
Query: 496 KAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHV 555
+A A+HG KDQ R + ++ F+ G VL+ATDVA++GLD +I+ V+N+D+ +++ +V
Sbjct: 80 EAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYV 139
Query: 556 HRIGRTGRAGDKDGTAYTLVTQ 577
HRIGRTG +G+ G A T + +
Sbjct: 140 HRIGRTGCSGNT-GIATTFINK 160
>pdb|2KBE|A Chain A, Solution Structure Of Amino-Terminal Domain Of Dbp5p
Length = 226
Score = 102 bits (254), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 114/210 (54%), Gaps = 20/210 (9%)
Query: 225 KTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLP 282
K+F++ G + +L+ I ++KP+ IQ +ALP++L R++I +++G+GKTAAF L
Sbjct: 22 KSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLT 81
Query: 283 MIVHIMDQPELQKEEGPIGVICAPTRELAHQ---IYLETKKFAKSHGIRVSAVYGGMSKL 339
M+ + PE + P + AP+RELA Q + E KF K + +
Sbjct: 82 MLTRV--NPE---DASPQAICLAPSRELARQTLEVVQEMGKFTK--------ITSQLIVP 128
Query: 340 DQF-KELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFD-LGFEPQIRSIV 397
D F K + ++++ TPG ++D+++ K + + ++ VLDEAD M D G Q +
Sbjct: 129 DSFEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVK 188
Query: 398 GQIRPDRQTLLFSATMPRKVEKLAREILSD 427
+ D Q +LFSAT V + A++I+ +
Sbjct: 189 RFLPKDTQLVLFSATFADAVRQYAKKIVPN 218
>pdb|2HJV|A Chain A, Structure Of The Second Domain (Residues 207-368) Of The
Bacillus Subtilis Yxin Protein
pdb|2HJV|B Chain B, Structure Of The Second Domain (Residues 207-368) Of The
Bacillus Subtilis Yxin Protein
Length = 163
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 84/143 (58%), Gaps = 2/143 (1%)
Query: 445 QVVHVIPSDAEKLPWLLEKLPGMIDDGD-VLVFASKKTTVDEIESQLAQKGFKAAALHGD 503
+ H + E+ + L K M ++ D ++F K V+++ +L G+ +HG
Sbjct: 9 NIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGG 68
Query: 504 KDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGR 563
Q R +++ +FK G Y L+ATDVAARG+DI++I V+N+D+ + + +VHR GRTGR
Sbjct: 69 MIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGR 128
Query: 564 AGDKDGTAYTLVTQKEARFAGEL 586
AG+K G A + VT E RF ++
Sbjct: 129 AGNK-GKAISFVTAFEKRFLADI 150
>pdb|3FMO|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 300
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 119/214 (55%), Gaps = 21/214 (9%)
Query: 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILS--GRDIIGIAKTGSGKTAAFVL 281
VK+FE+ QL+ + G+ +P+ IQ ALP++L+ +++I +++G+GKTAAFVL
Sbjct: 91 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 150
Query: 282 PMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG-----IRVSAVYGGM 336
M+ + +P + P + +PT ELA L+T K + G ++++ G
Sbjct: 151 AMLSQV--EP---ANKYPQCLCLSPTYELA----LQTGKVIEQMGKFYPELKLAYAVRG- 200
Query: 337 SKLDQFKELKAGCEIVIATPGRLIDML-KMKALTMSRVTYLVLDEADRMFDL-GFEPQIR 394
+KL++ +++ +IVI TPG ++D K+K + ++ VLDEAD M G + Q
Sbjct: 201 NKLERGQKISE--QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSI 258
Query: 395 SIVGQIRPDRQTLLFSATMPRKVEKLAREILSDP 428
I + + Q LLFSAT V K A++++ DP
Sbjct: 259 RIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDP 292
>pdb|3FHC|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Nup214
Length = 235
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 119/214 (55%), Gaps = 21/214 (9%)
Query: 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILS--GRDIIGIAKTGSGKTAAFVL 281
VK+FE+ QL+ + G+ +P+ IQ ALP++L+ +++I +++G+GKTAAFVL
Sbjct: 24 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 83
Query: 282 PMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG-----IRVSAVYGGM 336
M+ + +P + P + +PT ELA L+T K + G ++++ G
Sbjct: 84 AMLSQV--EP---ANKYPQCLCLSPTYELA----LQTGKVIEQMGKFYPELKLAYAVRG- 133
Query: 337 SKLDQFKELKAGCEIVIATPGRLIDML-KMKALTMSRVTYLVLDEADRMFDL-GFEPQIR 394
+KL++ +++ +IVI TPG ++D K+K + ++ VLDEAD M G + Q
Sbjct: 134 NKLERGQKISE--QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSI 191
Query: 395 SIVGQIRPDRQTLLFSATMPRKVEKLAREILSDP 428
I + + Q LLFSAT V K A++++ DP
Sbjct: 192 RIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDP 225
>pdb|2OXC|A Chain A, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|2OXC|B Chain B, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|3B7G|A Chain A, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
pdb|3B7G|B Chain B, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
Length = 230
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 103/207 (49%), Gaps = 8/207 (3%)
Query: 227 FEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVH 286
FE S ++ + G+E+P+ +Q +A+P+ G D+I AK+G+GKT F
Sbjct: 26 FESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFS----TI 81
Query: 287 IMDQPELQKEEGPIGVICAPTRELAHQIY-LETKKFAKSHGIRVSAVYGGMSKLDQFKEL 345
+D L+ I +I APTRE+A QI+ + T K G+ GG + L Q K
Sbjct: 82 ALDSLVLENLSTQI-LILAPTREIAVQIHSVITAIGIKMEGLECHVFIGG-TPLSQDKTR 139
Query: 346 KAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG-FEPQIRSIVGQIRPDR 404
C I + +PGR+ ++++ L + +LDEAD++ + G F+ QI I + +
Sbjct: 140 LKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASK 199
Query: 405 QTLLFSATMPRKVEKLAREILSDPVRV 431
Q L SAT P + + + DP V
Sbjct: 200 QMLAVSATYPEFLANALTKYMRDPTFV 226
>pdb|2YJT|D Chain D, Crystal Structure Of E. Coli Dead-Box Protein Srmb Bound
To Regulator Of Ribonuclease Activity A (Rraa)
Length = 170
Score = 87.8 bits (216), Expect = 2e-17, Method: Composition-based stats.
Identities = 47/113 (41%), Positives = 67/113 (59%), Gaps = 1/113 (0%)
Query: 474 LVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARG 533
+VF K+ V E+ + L + G L G+ Q R E +++ G +VL+ATDVAARG
Sbjct: 34 IVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARG 93
Query: 534 LDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGEL 586
+DI + V NFD+ R D ++HRIGRT RAG K GTA +LV + G++
Sbjct: 94 IDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRK-GTAISLVEAHDHLLLGKV 145
>pdb|2RB4|A Chain A, Crystal Structure Of The Helicase Domain Of Human Ddx25
Rna Helicase
pdb|2RB4|B Chain B, Crystal Structure Of The Helicase Domain Of Human Ddx25
Rna Helicase
Length = 175
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 7/121 (5%)
Query: 461 LEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGV 520
L + G I G ++F + + ++ Q G + + L G+ R I+Q+F+ G
Sbjct: 25 LCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGK 84
Query: 521 YHVLIATDVAARGLDIKSIKSVVNFDIAR------DMDMHVHRIGRTGRAGDKDGTAYTL 574
VLI T+V ARG+D+K + VVNFD+ D + ++HRIGRTGR G K G A+ +
Sbjct: 85 EKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFG-KKGLAFNM 143
Query: 575 V 575
+
Sbjct: 144 I 144
>pdb|2KBF|A Chain A, Solution Structure Of Carboxyl-Terminal Domain Of Dbp5p
Length = 187
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 78/144 (54%), Gaps = 8/144 (5%)
Query: 443 ITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHG 502
I Q+ ++A+K L E L G++ G ++F + K T + + +L +G + + LHG
Sbjct: 9 IKQLYMDCKNEADKFDVLTE-LYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHG 67
Query: 503 DKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIAR------DMDMHVH 556
D R ++ F+ G VLI T+V ARG+DI ++ VVN+D+ D ++H
Sbjct: 68 DLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIH 127
Query: 557 RIGRTGRAGDKDGTAYTLVTQKEA 580
RIGRTGR G K G A + V K +
Sbjct: 128 RIGRTGRFGRK-GVAISFVHDKNS 150
>pdb|3GFP|A Chain A, Structure Of The C-Terminal Domain Of The Dead-Box Protein
Dbp5
Length = 189
Score = 78.6 bits (192), Expect = 9e-15, Method: Composition-based stats.
Identities = 50/144 (34%), Positives = 77/144 (53%), Gaps = 8/144 (5%)
Query: 443 ITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHG 502
I Q+ ++A+K L E L G+ G ++F + K T + + +L +G + + LHG
Sbjct: 11 IKQLYXDCKNEADKFDVLTE-LYGLXTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHG 69
Query: 503 DKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIAR------DMDMHVH 556
D R ++ F+ G VLI T+V ARG+DI ++ VVN+D+ D ++H
Sbjct: 70 DLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSXVVNYDLPTLANGQADPATYIH 129
Query: 557 RIGRTGRAGDKDGTAYTLVTQKEA 580
RIGRTGR G K G A + V K +
Sbjct: 130 RIGRTGRFGRK-GVAISFVHDKNS 152
>pdb|3PEU|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
H337r And Ip6
pdb|3PEV|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
And Ip6
Length = 188
Score = 77.8 bits (190), Expect = 2e-14, Method: Composition-based stats.
Identities = 50/144 (34%), Positives = 77/144 (53%), Gaps = 8/144 (5%)
Query: 443 ITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHG 502
I Q+ ++A+K L E L G+ G ++F + K T + + +L +G + + LHG
Sbjct: 10 IKQLYXDCKNEADKFDVLTE-LYGVXTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHG 68
Query: 503 DKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIAR------DMDMHVH 556
D R ++ F+ G VLI T+V ARG+DI ++ VVN+D+ D ++H
Sbjct: 69 DLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSXVVNYDLPTLANGQADPATYIH 128
Query: 557 RIGRTGRAGDKDGTAYTLVTQKEA 580
RIGRTGR G K G A + V K +
Sbjct: 129 RIGRTGRFGRK-GVAISFVHDKNS 151
>pdb|1OYY|A Chain A, Structure Of The Recq Catalytic Core Bound To Atp-Gamma-S
Length = 523
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/334 (21%), Positives = 150/334 (44%), Gaps = 36/334 (10%)
Query: 244 GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVI 303
GY++ Q + + +LSGRD + + TG GK+ + +P ++ + V+
Sbjct: 22 GYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL-----------NGLTVV 70
Query: 304 CAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCE-----IVIATPGR 358
+P L + +++G+ + + ++ Q E+ GC ++ P R
Sbjct: 71 VSPLISLMK----DQVDQLQANGVAAACLNSTQTREQQL-EVMTGCRTGQIRLLYIAPER 125
Query: 359 LIDMLKMKALTMSRVTYLVLDEADRMFDLG--FEPQIRSIVGQIRPDRQTLLFSATMPRK 416
L+ ++ L L +DEA + G F P+ ++ GQ+R TL F A
Sbjct: 126 LMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAAL-GQLRQRFPTLPFMALTATA 184
Query: 417 VEKLAREI-----LSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDG 471
+ ++I L+DP+ + +++ D + +++ + L L+ +
Sbjct: 185 DDTTRQDIVRLLGLNDPL------IQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKS 238
Query: 472 DVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAA 531
+ ++ + + V++ ++L KG AAA H + R ++ +KF+ +++AT
Sbjct: 239 GI-IYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFG 297
Query: 532 RGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAG 565
G++ +++ VV+FDI R+++ + GR GR G
Sbjct: 298 MGINKPNVRFVVHFDIPRNIESYYQETGRAGRDG 331
>pdb|1OYW|A Chain A, Structure Of The Recq Catalytic Core
Length = 523
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/334 (21%), Positives = 147/334 (44%), Gaps = 36/334 (10%)
Query: 244 GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVI 303
GY++ Q + + +LSGRD + + TG GK+ + +P ++ + V+
Sbjct: 22 GYQQFRPGQEEIIDTVLSGRDCLVVXPTGGGKSLCYQIPALLL-----------NGLTVV 70
Query: 304 CAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCE-----IVIATPGR 358
+P L + +++G+ + + ++ Q E+ GC ++ P R
Sbjct: 71 VSPLISLXK----DQVDQLQANGVAAACLNSTQTREQQL-EVXTGCRTGQIRLLYIAPER 125
Query: 359 LIDMLKMKALTMSRVTYLVLDEADRMFDLG--FEPQIRSIVGQIRPDRQTLLFSATMPRK 416
L ++ L L +DEA + G F P+ ++ GQ+R TL F A
Sbjct: 126 LXLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAAL-GQLRQRFPTLPFXALTATA 184
Query: 417 VEKLAREI-----LSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDG 471
+ ++I L+DP+ + +++ D + + + + L L +
Sbjct: 185 DDTTRQDIVRLLGLNDPL------IQISSFDRPNIRYXLXEKFKPLDQLXRYVQEQRGKS 238
Query: 472 DVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAA 531
+ ++ + + V++ ++L KG AAA H + R ++ +KF+ +++AT
Sbjct: 239 GI-IYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFG 297
Query: 532 RGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAG 565
G++ +++ VV+FDI R+++ + GR GR G
Sbjct: 298 XGINKPNVRFVVHFDIPRNIESYYQETGRAGRDG 331
>pdb|2WAX|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAX|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAY|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAY|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
Length = 193
Score = 70.9 bits (172), Expect = 2e-12, Method: Composition-based stats.
Identities = 32/103 (31%), Positives = 59/103 (57%), Gaps = 1/103 (0%)
Query: 474 LVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARG 533
++F + V+ + +++Q G+ +H Q R + F++G+ L+ TD+ RG
Sbjct: 48 IIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRG 107
Query: 534 LDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVT 576
+DI+++ V+NFD + + ++HRIGR+GR G G A L+T
Sbjct: 108 IDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHL-GLAINLIT 149
>pdb|1T5I|A Chain A, Crystal Structure Of The C-Terminal Domain Of Uap56
Length = 172
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 67/132 (50%), Gaps = 2/132 (1%)
Query: 445 QVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDK 504
Q +V D EK L + L +++ V++F + L ++ F A A+H
Sbjct: 7 QQYYVKLKDNEKNRKLFD-LLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGM 65
Query: 505 DQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRA 564
Q R+ Q+FK +L+AT++ RG+DI+ + N+D+ D D ++HR+ R GR
Sbjct: 66 PQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRF 125
Query: 565 GDKDGTAYTLVT 576
G K G A T V+
Sbjct: 126 GTK-GLAITFVS 136
>pdb|3I32|A Chain A, Dimeric Structure Of A Hera Helicase Fragment Including
The C-Terminal Reca Domain, The Dimerization Domain, And
The Rna Binding Domain
Length = 300
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 46/83 (55%)
Query: 474 LVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARG 533
+VF K +EI L + G A ALHGD Q R ++ F+ G VL+ATDVAARG
Sbjct: 32 MVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAARG 91
Query: 534 LDIKSIKSVVNFDIARDMDMHVH 556
LDI + VV++ + + + H
Sbjct: 92 LDIPQVDLVVHYRMPDRAEAYQH 114
>pdb|3EAQ|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase Hera
Form 2, Complete Dimer, Symmetric
pdb|3EAQ|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase Hera
Form 2, Complete Dimer, Symmetric
pdb|3EAR|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Partial Dimer
pdb|3EAR|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Partial Dimer
pdb|3EAS|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Complete Dimer, Asymmetric
pdb|3EAS|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Complete Dimer, Asymmetric
Length = 212
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 46/83 (55%)
Query: 474 LVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARG 533
+VF K +EI L + G A ALHGD Q R +L F+ G VL+ATDVAARG
Sbjct: 35 MVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARG 94
Query: 534 LDIKSIKSVVNFDIARDMDMHVH 556
LDI + VV++ + + + H
Sbjct: 95 LDIPQVDLVVHYRLPDRAEAYQH 117
>pdb|4DB4|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric
Rna-Dna Duplex
pdb|4DB4|B Chain B, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric
Rna-Dna Duplex
Length = 256
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 500 LHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIG 559
HG Q R ++++FK +L+ TDV ARG+D ++ V+ + ++ ++HRIG
Sbjct: 66 FHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIG 125
Query: 560 RTGRAGDKDGTAYTLVTQKEARFAGEL 586
RT R+G K+G++ + + E F EL
Sbjct: 126 RTARSG-KEGSSVLFICKDELPFVREL 151
>pdb|4DB2|C Chain C, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
pdb|4DB2|D Chain D, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
Length = 257
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 500 LHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIG 559
HG Q R ++++FK +L+ TDV ARG+D ++ V+ + ++ ++HRIG
Sbjct: 66 FHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIG 125
Query: 560 RTGRAGDKDGTAYTLVTQKEARFAGEL 586
RT R+G K+G++ + + E F EL
Sbjct: 126 RTARSG-KEGSSVLFICKDELPFVREL 151
>pdb|4DB2|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
pdb|4DB2|B Chain B, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
Length = 257
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 500 LHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIG 559
HG Q R ++++FK +L+ TDV ARG+D ++ V+ + ++ ++HRIG
Sbjct: 66 FHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIG 125
Query: 560 RTGRAGDKDGTAYTLVTQKEARFAGEL 586
RT R+G K+G++ + + E F EL
Sbjct: 126 RTARSG-KEGSSVLFICKDELPFVREL 151
>pdb|1FUK|A Chain A, Crystal Structure Of The Carboxy Terminal Domain Of Yeast
Eif4a
Length = 165
Score = 62.8 bits (151), Expect = 6e-10, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 54/83 (65%)
Query: 474 LVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARG 533
++F + + V+E+ ++L F +A++ D Q R I+++F+SG +LI+TD+ ARG
Sbjct: 34 VIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARG 93
Query: 534 LDIKSIKSVVNFDIARDMDMHVH 556
+D++ + V+N+D+ + + ++H
Sbjct: 94 IDVQQVSLVINYDLPANKENYIH 116
>pdb|2V1X|A Chain A, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2V1X|B Chain B, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2WWY|A Chain A, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
pdb|2WWY|B Chain B, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
Length = 591
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 71/340 (20%), Positives = 142/340 (41%), Gaps = 44/340 (12%)
Query: 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICA 305
EK +Q + + + ++G+++ + TG GK+ + LP + +G VIC
Sbjct: 43 EKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALC----------SDGFTLVICP 92
Query: 306 PTRELAHQIYL-------ETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGR 358
+ Q+ + T A S V V+ M +++ ELK ++ TP +
Sbjct: 93 LISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEM--VNKNSELK----LIYVTPEK 146
Query: 359 L----IDMLKM-KALTMSRVTYLVLDEADRMFDLG--FEPQIRS--IVGQIRPDRQTLLF 409
+ + M ++ KA R T + +DE G F P ++ I+ + P+ +
Sbjct: 147 IAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGL 206
Query: 410 SATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMID 469
+AT V A++IL T ++ V PS+ E +E + +I+
Sbjct: 207 TATATNHVLTDAQKILCIEKCFTF-TASFNRPNLYYEVRQKPSNTEDF---IEDIVKLIN 262
Query: 470 ------DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHV 523
G + F+ K + +++ L G A A H + + + + +K+ + V
Sbjct: 263 GRYKGQSGIIYCFSQKDS--EQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQV 320
Query: 524 LIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGR 563
++AT G+D ++ V++ +++ M+ + GR GR
Sbjct: 321 VVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGR 360
>pdb|2VA8|A Chain A, Dna Repair Helicase Hel308
pdb|2VA8|B Chain B, Dna Repair Helicase Hel308
Length = 715
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 94/204 (46%), Gaps = 14/204 (6%)
Query: 227 FEDCGFSTQLMHAISKQGYEKPTSIQCQALPI-ILSGRDIIGIAKTGSGKTAAFVLPMIV 285
ED + ++ I K+G +K Q +A+ +L G ++ + TGSGKT + +I
Sbjct: 10 IEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIIS 69
Query: 286 HIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKEL 345
++ + G + P R L ++ YL K + + G +V+ G D + +
Sbjct: 70 FLL-------KNGGKAIYVTPLRALTNEKYLTFKDW-ELIGFKVAMTSGDYDTDDAWLK- 120
Query: 346 KAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 405
+I+I T +L + + + ++ V Y VLDE + D P + S+ IR R+
Sbjct: 121 --NYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPERGPVVESVT--IRAKRR 176
Query: 406 TLLFSATMPRKVEKLAREILSDPV 429
LL + +++A+ + ++PV
Sbjct: 177 NLLALSATISNYKQIAKWLGAEPV 200
>pdb|1WP9|A Chain A, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|B Chain B, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|C Chain C, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|D Chain D, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|E Chain E, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|F Chain F, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
Length = 494
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 19/130 (14%)
Query: 469 DDGDVLVFASKKTTVDEIESQLAQKGFKA------AALHGDKDQASRME--ILQKFKSGV 520
+ ++VF + + T +I ++L + G KA A+ D+ + R + IL +F G
Sbjct: 360 QNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGE 419
Query: 521 YHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGR-----------AGDKDG 569
++VL+AT V GLD+ + VV ++ + R GRTGR G +D
Sbjct: 420 FNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMPGRVIILMAKGTRDE 479
Query: 570 TAYTLVTQKE 579
Y QKE
Sbjct: 480 AYYWSSRQKE 489
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 8/113 (7%)
Query: 271 TGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVS 330
TG GKT +I ++ + L K G + ++ APT+ L Q ++ ++
Sbjct: 32 TGLGKT------LIAMMIAEYRLTKYGGKV-LMLAPTKPLVLQHAESFRRLFNLPPEKIV 84
Query: 331 AVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR 383
A+ G S ++ K A ++++ATP + + L +++ V+ +V DEA R
Sbjct: 85 ALTGEKSPEERSKAW-ARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHR 136
>pdb|3TMI|A Chain A, Structural Basis For Rna Recognition And Activation Of
Rig-I
Length = 695
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 67/137 (48%), Gaps = 6/137 (4%)
Query: 247 KPTSIQCQ-ALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICA 305
KP + Q + ALP + G++ I A TG GKT +L H+ P+ QK +
Sbjct: 12 KPRNYQLELALPA-MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQI 70
Query: 306 PTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM 365
P E ++ K+ + HG RV+ + G ++ +++ +I+I TP L++ LK
Sbjct: 71 PVYEQQKSVF---SKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK 127
Query: 366 KAL-TMSRVTYLVLDEA 381
+ ++S T ++ DE
Sbjct: 128 GTIPSLSIFTLMIFDEC 144
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 512 ILQKFK-SGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGT 570
IL FK SG +++LIAT VA G+DI V+ ++ ++ + GR GRA G+
Sbjct: 451 ILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA---RGS 506
Query: 571 AYTLVTQKEARFAGELVN 588
L+T E +N
Sbjct: 507 KCFLLTSNAGVIEKEQIN 524
>pdb|2YKG|A Chain A, Structural Insights Into Rna Recognition By Rig-I
Length = 696
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 67/137 (48%), Gaps = 6/137 (4%)
Query: 247 KPTSIQCQ-ALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICA 305
KP + Q + ALP + G++ I A TG GKT +L H+ P+ QK +
Sbjct: 13 KPRNYQLELALPA-MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQI 71
Query: 306 PTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM 365
P E ++ K+ + HG RV+ + G ++ +++ +I+I TP L++ LK
Sbjct: 72 PVYEQNKSVF---SKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK 128
Query: 366 KAL-TMSRVTYLVLDEA 381
+ ++S T ++ DE
Sbjct: 129 GTIPSLSIFTLMIFDEC 145
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 512 ILQKFK-SGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGT 570
IL FK SG +++LIAT VA G+DI V+ ++ ++ + GR GRA G+
Sbjct: 452 ILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA---RGS 507
Query: 571 AYTLVTQKEARFAGELVN 588
L+T E +N
Sbjct: 508 KCFLLTSNAGVIEKEQIN 525
>pdb|4AY2|A Chain A, Capturing 5' Tri-Phosphorylated Rna Duplex By Rig-I
Length = 687
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 67/137 (48%), Gaps = 6/137 (4%)
Query: 247 KPTSIQCQ-ALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICA 305
KP + Q + ALP + G++ I A TG GKT +L H+ P+ QK +
Sbjct: 4 KPRNYQLELALPA-MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQI 62
Query: 306 PTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM 365
P E ++ K+ + HG RV+ + G ++ +++ +I+I TP L++ LK
Sbjct: 63 PVYEQNKSVF---SKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK 119
Query: 366 KAL-TMSRVTYLVLDEA 381
+ ++S T ++ DE
Sbjct: 120 GTIPSLSIFTLMIFDEC 136
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 512 ILQKFK-SGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGT 570
IL FK SG +++LIAT VA G+DI V+ ++ ++ + GR GRA G+
Sbjct: 443 ILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA---RGS 498
Query: 571 AYTLVTQKEARFAGELVN 588
L+T E +N
Sbjct: 499 KCFLLTSNAGVIEKEQIN 516
>pdb|2P6R|A Chain A, Crystal Structure Of Superfamily 2 Helicase Hel308 In
Complex With Unwound Dna
pdb|2P6U|A Chain A, Apo Structure Of The Hel308 Superfamily 2 Helicase
Length = 702
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 87/400 (21%), Positives = 177/400 (44%), Gaps = 64/400 (16%)
Query: 232 FSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQP 291
S+ + + ++G E+ Q +A+ + SG++++ T +GKT + M+ +
Sbjct: 10 ISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAI--- 66
Query: 292 ELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEI 351
+G + P R LA + Y KK+ K G+R+ G D E C+I
Sbjct: 67 -----KGGKSLYVVPLRALAGEKYESFKKWEKI-GLRIGISTGDYESRD---EHLGDCDI 117
Query: 352 VIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLL--- 408
++ T + +++ +A + V+ LV+DE + + +V ++R + L
Sbjct: 118 IVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIG 177
Query: 409 FSATMPRKVEKLAREI-----LSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPW--LL 461
SAT P V ++A + +SD V + E G+ E ++ S + ++ + L+
Sbjct: 178 LSATAP-NVTEIAEWLDADYYVSDWRPVPLVE-GVLCEGTLELFDGAFSTSRRVKFEELV 235
Query: 462 EKLPGMIDDGDVLVFASKKTTVDEIESQLA--------QKGFKAAALHGDKDQASR--ME 511
E+ + ++G VLVF S + ++ +L+ +G + A L ++ + SR E
Sbjct: 236 EEC--VAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAE 293
Query: 512 ILQK--------------------FKSGVYHVLIATDVAARGLDIKS----IKSVVNFD- 546
++K F+ G V++AT A G+++ + ++S+ FD
Sbjct: 294 CVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDG 353
Query: 547 IARDMDMHVHR--IGRTGRAG-DKDGTAYTLVTQKEARFA 583
++ + + ++ GR GR G D+ G A +V +++ A
Sbjct: 354 YSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIA 393
>pdb|1D9X|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb
Length = 658
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 474 LVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARG 533
LV K +++ L + G K A LH + R+EI++ + G Y VL+ ++ G
Sbjct: 449 LVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREG 508
Query: 534 LDIKSIKSVVNFDIARDMDMHVHR-----IGRTGRAGD 566
LDI + V D ++ + R IGR R +
Sbjct: 509 LDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAN 546
>pdb|1T5L|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb Point
Mutant Y96a Revealing A Novel Fold For Domain 2
pdb|1T5L|B Chain B, Crystal Structure Of The Dna Repair Protein Uvrb Point
Mutant Y96a Revealing A Novel Fold For Domain 2
Length = 658
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 474 LVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARG 533
LV K +++ L + G K A LH + R+EI++ + G Y VL+ ++ G
Sbjct: 449 LVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREG 508
Query: 534 LDIKSIKSVVNFDIARDMDMHVHR-----IGRTGRAGD 566
LDI + V D ++ + R IGR R +
Sbjct: 509 LDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAN 546
>pdb|1D9Z|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb In
Complex With Atp
Length = 657
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 474 LVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARG 533
LV K +++ L + G K A LH + R+EI++ + G Y VL+ ++ G
Sbjct: 448 LVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREG 507
Query: 534 LDIKSIKSVVNFDIARDMDMHVHR-----IGRTGRAGD 566
LDI + V D ++ + R IGR R +
Sbjct: 508 LDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAN 545
>pdb|2FDC|A Chain A, Structural Basis Of Dna Damage Recognition And Processing
By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX
pdb|2FDC|B Chain B, Structural Basis Of Dna Damage Recognition And Processing
By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX
Length = 658
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 474 LVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARG 533
LV K +++ L + G K A LH + R+EI++ + G Y VL+ ++ G
Sbjct: 449 LVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREG 508
Query: 534 LDIKSIKSVVNFDIARDMDMHVHR-----IGRTGRAGD 566
LDI + V D ++ + R IGR R +
Sbjct: 509 LDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAN 546
>pdb|3UWX|B Chain B, Crystal Structure Of Uvra-Uvrb Complex
Length = 683
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 474 LVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARG 533
LV K +++ L + G K A LH + R+EI++ + G Y VL+ ++ G
Sbjct: 474 LVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREG 533
Query: 534 LDIKSIKSVVNFDIARDMDMHVHR-----IGRTGRAGD 566
LDI + V D ++ + R IGR R +
Sbjct: 534 LDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAN 571
>pdb|4GL2|A Chain A, Structural Basis For Dsrna Duplex Backbone Recognition By
Mda5
pdb|4GL2|B Chain B, Structural Basis For Dsrna Duplex Backbone Recognition By
Mda5
Length = 699
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 506 QASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAG 565
Q + E++ KF++G ++LIAT VA GLDIK V+ + + + V GR RA
Sbjct: 450 QNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGR-ARA- 507
Query: 566 DKDGTAYTLV 575
D + Y LV
Sbjct: 508 --DESTYVLV 515
>pdb|3V4R|A Chain A, Crystal Structure Of A Uvrb Dimer-Dna Complex
pdb|3V4R|B Chain B, Crystal Structure Of A Uvrb Dimer-Dna Complex
Length = 667
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Query: 473 VLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAAR 532
VLV K +++ L + G K LH + R+EI++ + G Y VL+ ++
Sbjct: 454 VLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLRE 513
Query: 533 GLDIKSIKSVVNFDIARDMDMHVHR-----IGRTGRAGD 566
GLDI + V D ++ + R IGR R +
Sbjct: 514 GLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAE 552
>pdb|2D7D|A Chain A, Structural Insights Into The Cryptic Dna Dependent Atp-Ase
Activity Of Uvrb
pdb|2NMV|A Chain A, Damage Detection By The Uvrabc Pathway: Crystal Structure
Of Uvrb Bound To Fluorescein-Adducted Dna
Length = 661
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Query: 473 VLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAAR 532
VLV K +++ L + G K LH + R+EI++ + G Y VL+ ++
Sbjct: 448 VLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLRE 507
Query: 533 GLDIKSIKSVVNFDIARDMDMHVHR-----IGRTGRAGD 566
GLDI + V D ++ + R IGR R +
Sbjct: 508 GLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAE 546
>pdb|4I1S|A Chain A, Melanoma Differentiation Associated Protein-5 Helicase
Domain Complex With Inhibitor Non-structural Protein V
Length = 243
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 27/42 (64%)
Query: 506 QASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDI 547
Q + E++ KF++G ++LIAT VA GLDIK V+ + +
Sbjct: 200 QNEQREVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGL 241
>pdb|1GM5|A Chain A, Structure Of Recg Bound To Three-Way Dna Junction
Length = 780
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 495 FKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMH 554
FK +HG Q + ++ +F G Y +L++T V G+D+ +V + R
Sbjct: 614 FKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQ 673
Query: 555 VHRI-GRTGRAGDK 567
+H++ GR GR G +
Sbjct: 674 LHQLRGRVGRGGQE 687
>pdb|3DMQ|A Chain A, Crystal Structure Of Rapa, A Swi2SNF2 PROTEIN THAT
Recycles Rna Polymerase During Transcription
pdb|3DMQ|B Chain B, Crystal Structure Of Rapa, A Swi2SNF2 PROTEIN THAT
Recycles Rna Polymerase During Transcription
Length = 968
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 15/102 (14%)
Query: 473 VLVFASKKTTVDEIESQLAQK-GFKAAALHGDKDQASRMEILQKFKSGVY--------HV 523
VLV +K T ++E L ++ G +AA H I+++ ++ + V
Sbjct: 506 VLVICAKAATALQLEQVLREREGIRAAVFH------EGXSIIERDRAAAWFAEEDTGAQV 559
Query: 524 LIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAG 565
L+ +++ + G + + V FD+ + D+ RIGR R G
Sbjct: 560 LLCSEIGSEGRNFQFASHXVXFDLPFNPDLLEQRIGRLDRIG 601
>pdb|4A2Q|A Chain A, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|B Chain B, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|D Chain D, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|E Chain E, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
Length = 797
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 63/148 (42%), Gaps = 24/148 (16%)
Query: 461 LEKLPGMIDDG-------DVLVFASKKTTVDEIESQLAQKGF----KAAAL--HGDKDQA 507
LE+L ++DD L+FA + V ++ + + K L G +DQ
Sbjct: 615 LEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQT 674
Query: 508 SRME------ILQKFKSGV-YHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGR 560
+ M +L FK+ +LIAT VA G+DI VV ++ + ++ + GR
Sbjct: 675 TGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR 734
Query: 561 TGRAGDKDGTAYTLVTQKEARFAGELVN 588
GRA G+ LVT K E N
Sbjct: 735 -GRAA---GSKCILVTSKTEVVENEKCN 758
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 58/137 (42%), Gaps = 4/137 (2%)
Query: 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICA 305
+K S Q + ++G++ + A TGSGKT +L H + P +K +
Sbjct: 247 KKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKV 306
Query: 306 PTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM 365
P E ++ K + G V + G +++ +I++ TP L++ +
Sbjct: 307 PVYEQQKNVF---KHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFED 363
Query: 366 KALT-MSRVTYLVLDEA 381
LT +S T ++ DE
Sbjct: 364 GTLTSLSIFTLMIFDEC 380
>pdb|4A2W|A Chain A, Structure Of Full-Length Duck Rig-I
pdb|4A2W|B Chain B, Structure Of Full-Length Duck Rig-I
Length = 936
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 63/148 (42%), Gaps = 24/148 (16%)
Query: 461 LEKLPGMIDDG-------DVLVFASKKTTVDEIESQLAQKGF----KAAAL--HGDKDQA 507
LE+L ++DD L+FA + V ++ + + K L G +DQ
Sbjct: 615 LEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQT 674
Query: 508 SRME------ILQKFKSGV-YHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGR 560
+ M +L FK+ +LIAT VA G+DI VV ++ + ++ + GR
Sbjct: 675 TGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR 734
Query: 561 TGRAGDKDGTAYTLVTQKEARFAGELVN 588
GRA G+ LVT K E N
Sbjct: 735 -GRAA---GSKCILVTSKTEVVENEKCN 758
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 58/137 (42%), Gaps = 4/137 (2%)
Query: 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICA 305
+K S Q + ++G++ + A TGSGKT +L H + P +K +
Sbjct: 247 KKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKV 306
Query: 306 PTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM 365
P E ++ K + G V + G +++ +I++ TP L++ +
Sbjct: 307 PVYEQQKNVF---KHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFED 363
Query: 366 KALT-MSRVTYLVLDEA 381
LT +S T ++ DE
Sbjct: 364 GTLTSLSIFTLMIFDEC 380
>pdb|4A2P|A Chain A, Structure Of Duck Rig-I Helicase Domain
pdb|4A36|A Chain A, Structure Of Duck Rig-I Helicase Domain Bound To 19-Mer
Dsrna And Atp Transition State Analogue
pdb|4A36|B Chain B, Structure Of Duck Rig-I Helicase Domain Bound To 19-Mer
Dsrna And Atp Transition State Analogue
Length = 556
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 63/148 (42%), Gaps = 24/148 (16%)
Query: 461 LEKLPGMIDDG-------DVLVFASKKTTVDEIESQLAQKGF----KAAAL--HGDKDQA 507
LE+L ++DD L+FA + V ++ + + K L G +DQ
Sbjct: 374 LEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQT 433
Query: 508 SRME------ILQKFKSGV-YHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGR 560
+ M +L FK+ +LIAT VA G+DI VV ++ + ++ + GR
Sbjct: 434 TGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR 493
Query: 561 TGRAGDKDGTAYTLVTQKEARFAGELVN 588
GRA G+ LVT K E N
Sbjct: 494 -GRAA---GSKCILVTSKTEVVENEKCN 517
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 58/137 (42%), Gaps = 4/137 (2%)
Query: 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICA 305
+K S Q + ++G++ + A TGSGKT +L H + P +K +
Sbjct: 6 KKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKV 65
Query: 306 PTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM 365
P E ++ K + G V + G +++ +I++ TP L++ +
Sbjct: 66 PVYEQQKNVF---KHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFED 122
Query: 366 KALT-MSRVTYLVLDEA 381
LT +S T ++ DE
Sbjct: 123 GTLTSLSIFTLMIFDEC 139
>pdb|2FWR|A Chain A, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|B Chain B, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|C Chain C, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|D Chain D, Structure Of Archaeoglobus Fulgidis Xpb
Length = 472
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 47/107 (43%), Gaps = 7/107 (6%)
Query: 473 VLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAAR 532
+++F V I K F A+ + R EIL+ F++G + ++++ V
Sbjct: 352 IIIFTRHNELVYRI-----SKVFLIPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDE 406
Query: 533 GLDIKSIKSVVNFDIARDMDMHVHRIGRTGR--AGDKDGTAYTLVTQ 577
G+D+ V + ++ R+GR R G K+ Y L+++
Sbjct: 407 GIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISR 453
>pdb|3TBK|A Chain A, Mouse Rig-I Atpase Domain
Length = 555
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 6/137 (4%)
Query: 247 KPTSIQCQ-ALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICA 305
KP + Q + ALP G++ I A TG GKT +L H+ P QK +
Sbjct: 4 KPRNYQLELALPA-KKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQI 62
Query: 306 PTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM 365
P E ++ ++ + G ++++ G S + + +I+I TP L++ L
Sbjct: 63 PVYEQQATVF---SRYFERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNN 119
Query: 366 KAL-TMSRVTYLVLDEA 381
A+ ++S T + DE
Sbjct: 120 GAIPSLSVFTLXIFDEC 136
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 512 ILQKFK-SGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGD 566
+L+ F+ SG ++LIAT VA G+DI V+ ++ ++ + GR GRA D
Sbjct: 443 VLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVGNVIKXIQTRGR-GRARD 497
>pdb|2FZL|A Chain A, Structure Of C-Terminal Domain Of Archaeoglobus Fulgidus
Xpb
Length = 219
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 47/107 (43%), Gaps = 7/107 (6%)
Query: 473 VLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAAR 532
+++F V I K F A+ + R EIL+ F++G + ++++ V
Sbjct: 117 IIIFTRHNELVYRI-----SKVFLIPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDE 171
Query: 533 GLDIKSIKSVVNFDIARDMDMHVHRIGRTGR--AGDKDGTAYTLVTQ 577
G+D+ V + ++ R+GR R G K+ Y L+++
Sbjct: 172 GIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISR 218
>pdb|3U44|A Chain A, Crystal Structure Of Addab-Dna Complex
pdb|3U4Q|A Chain A, Structure Of Addab-Dna Complex At 2.8 Angstroms
Length = 1232
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 258 IILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGV 302
I+ +G+DI+ A GSGKTA V MI I EE PI V
Sbjct: 19 IVSTGQDILVAAAAGSGKTAVLVERMIRKIT------AEENPIDV 57
>pdb|1G0S|A Chain A, The Crystal Structure Of The E.Coli Adp-Ribose
Pyrophosphatase
pdb|1G0S|B Chain B, The Crystal Structure Of The E.Coli Adp-Ribose
Pyrophosphatase
pdb|1G9Q|A Chain A, Complex Structure Of The Adpr-Ase And Its Substrate Adp-
Ribose
pdb|1G9Q|B Chain B, Complex Structure Of The Adpr-Ase And Its Substrate Adp-
Ribose
pdb|1GA7|A Chain A, Crystal Structure Of The Adp-Ribose Pyrophosphatase In
Complex With Gd+3
pdb|1GA7|B Chain B, Crystal Structure Of The Adp-Ribose Pyrophosphatase In
Complex With Gd+3
pdb|1KHZ|A Chain A, Structure Of The Adpr-Ase In Complex With Ampcpr And Mg
pdb|1KHZ|B Chain B, Structure Of The Adpr-Ase In Complex With Ampcpr And Mg
Length = 209
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 14/96 (14%)
Query: 404 RQTL---LFSATMPRKVEKLAREILSDPVRVTVGEVGMA---------NEDITQV--VHV 449
R+TL FS + R +L +S VR + E G A +++ + + +
Sbjct: 21 RETLYRGFFSLDLYRFRHRLFNGQMSHEVRREIFERGHAAVLLPFDPVRDEVVLIEQIRI 80
Query: 450 IPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDE 485
D + PWLLE + GMI++G+ + +++ ++E
Sbjct: 81 AAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEE 116
>pdb|1TF2|A Chain A, Crystal Structure Of Seca:adp In An Open Conformation From
Bacillus Subtilis
pdb|1TF5|A Chain A, Crystal Structure Of Seca In An Open Conformation From
Bacillus Subtilis
Length = 844
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 52/129 (40%), Gaps = 12/129 (9%)
Query: 473 VLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAAR 532
VLV T + I L KG L+ + I + + G V IAT++A R
Sbjct: 435 VLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKGA--VTIATNMAGR 492
Query: 533 GLDIK---SIKSVVNFDIARDMDMHVHRI-----GRTGRAGDKDGTAYTLVTQKE--ARF 582
G DIK +K + + RI GR+GR GD T + L + E RF
Sbjct: 493 GTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDELMRRF 552
Query: 583 AGELVNSLI 591
E +++
Sbjct: 553 GAERTMAML 561
>pdb|1VIQ|A Chain A, Crystal Structure Of Putative Adp Ribose Pyrophosphatase
pdb|1VIQ|B Chain B, Crystal Structure Of Putative Adp Ribose Pyrophosphatase
pdb|1VIQ|C Chain C, Crystal Structure Of Putative Adp Ribose Pyrophosphatase
Length = 220
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 21/88 (23%)
Query: 408 LFSATMPRKVEKLAREILS----------DPVRVTVGEVGMANEDITQVVHVIPSDAEKL 457
LF+ M +V REI DPVR V + + + + D +
Sbjct: 41 LFNGQMSHEVR---REIFERGHAAVLLPFDPVRDEV--------VLIEQIRIAAYDTSET 89
Query: 458 PWLLEKLPGMIDDGDVLVFASKKTTVDE 485
PWLLE + GMI++G+ + +++ ++E
Sbjct: 90 PWLLEMVAGMIEEGESVEDVARREAIEE 117
>pdb|3JV2|A Chain A, Crystal Structure Of B. Subtilis Seca With Bound Peptide
pdb|3JV2|B Chain B, Crystal Structure Of B. Subtilis Seca With Bound Peptide
Length = 783
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 52/129 (40%), Gaps = 12/129 (9%)
Query: 473 VLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAAR 532
VLV T + I L KG L+ + I + + G V IAT++A R
Sbjct: 435 VLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKGA--VTIATNMAGR 492
Query: 533 GLDIK---SIKSVVNFDIARDMDMHVHRI-----GRTGRAGDKDGTAYTLVTQKEA--RF 582
G DIK +K + + RI GR+GR GD T + L + E RF
Sbjct: 493 GTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDELMRRF 552
Query: 583 AGELVNSLI 591
E +++
Sbjct: 553 GAERTMAML 561
>pdb|1M6N|A Chain A, Crystal Structure Of The Seca Translocation Atpase From
Bacillus Subtilis
pdb|1M74|A Chain A, Crystal Structure Of Mg-Adp-Bound Seca From Bacillus
Subtilis
Length = 802
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 52/129 (40%), Gaps = 12/129 (9%)
Query: 473 VLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAAR 532
VLV T + I L KG L+ + I + + G V IAT++A R
Sbjct: 432 VLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKGA--VTIATNMAGR 489
Query: 533 GLDIK---SIKSVVNFDIARDMDMHVHRI-----GRTGRAGDKDGTAYTLVTQKE--ARF 582
G DIK +K + + RI GR+GR GD T + L + E RF
Sbjct: 490 GTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDELMRRF 549
Query: 583 AGELVNSLI 591
E +++
Sbjct: 550 GAERTMAML 558
>pdb|3IQM|A Chain A, Active Site Mutants Of B. Subtilis Seca
Length = 802
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 52/129 (40%), Gaps = 12/129 (9%)
Query: 473 VLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAAR 532
VLV T + I L KG L+ + I + + G V IAT++A R
Sbjct: 432 VLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKGA--VTIATNMAGR 489
Query: 533 GLDIK---SIKSVVNFDIARDMDMHVHRI-----GRTGRAGDKDGTAYTLVTQKE--ARF 582
G DIK +K + + RI GR+GR GD T + L + E RF
Sbjct: 490 GTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDELMRRF 549
Query: 583 AGELVNSLI 591
E +++
Sbjct: 550 GAERTMAML 558
>pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of
The Yeast Chd1 Chromatin Remodeler
Length = 800
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 4/113 (3%)
Query: 469 DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFK---SGVYHVLI 525
D VL+F+ +D + L+ KG L G A R + F S + L+
Sbjct: 571 DGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLL 630
Query: 526 ATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGT-AYTLVTQ 577
+T G+++ + +VV FD + + + R R G K+ Y LV++
Sbjct: 631 STRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSK 683
>pdb|3DL8|A Chain A, Structure Of The Complex Of Aquifex Aeolicus Secyeg And
Bacillus Subtilis Seca
pdb|3DL8|B Chain B, Structure Of The Complex Of Aquifex Aeolicus Secyeg And
Bacillus Subtilis Seca
Length = 779
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 52/129 (40%), Gaps = 12/129 (9%)
Query: 473 VLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAAR 532
VLV T + I L KG L+ + I + + G V IAT++A R
Sbjct: 432 VLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKGA--VTIATNMAGR 489
Query: 533 GLDIK---SIKSVVNFDIARDMDMHVHRI-----GRTGRAGDKDGTAYTLVTQKEA--RF 582
G DIK +K + + RI GR+GR GD T + L + E RF
Sbjct: 490 GTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDELMRRF 549
Query: 583 AGELVNSLI 591
E +++
Sbjct: 550 GAERTMAML 558
>pdb|2IBM|A Chain A, A Novel Dimer Interface And Conformational Changes
Revealed By An X- Ray Structure Of B. Subtilis Seca
pdb|2IBM|B Chain B, A Novel Dimer Interface And Conformational Changes
Revealed By An X- Ray Structure Of B. Subtilis Seca
Length = 780
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 52/129 (40%), Gaps = 12/129 (9%)
Query: 473 VLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAAR 532
VLV T + I L KG L+ + I + + G V IAT++A R
Sbjct: 432 VLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKGA--VTIATNMAGR 489
Query: 533 GLDIK---SIKSVVNFDIARDMDMHVHRI-----GRTGRAGDKDGTAYTLVTQKEA--RF 582
G DIK +K + + RI GR+GR GD T + L + E RF
Sbjct: 490 GTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDELMRRF 549
Query: 583 AGELVNSLI 591
E +++
Sbjct: 550 GAERTMAML 558
>pdb|3B6E|A Chain A, Crystal Structure Of Human Dech-Box Rna Helicase Mda5
(Melanoma Differentiation-Associated Protein 5),
Dech-Domain
Length = 216
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 2/96 (2%)
Query: 260 LSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETK 319
L G++II TGSGKT V H +D+ + E G + V+ + E +
Sbjct: 46 LEGKNIIICLPTGSGKTRVAVYIAKDH-LDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQ 104
Query: 320 KFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIAT 355
F K RV + G F E+ C+I+I+T
Sbjct: 105 PFLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIIST 139
>pdb|2LTA|A Chain A, Solution Nmr Structure Of De Novo Designed Protein,
Rossmann 3x1 Fold, Northeast Structural Genomics
Consortium Target Or157
Length = 110
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 29/51 (56%)
Query: 473 VLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHV 523
+++ +S TT++E+ ++ +G + L DKD+ E +QK KS + V
Sbjct: 6 IVIISSDDTTLEELARKIKDEGLEVYILLKDKDEKRLEEKIQKLKSQGFEV 56
>pdb|1Z6A|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN
Length = 500
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/111 (20%), Positives = 54/111 (48%), Gaps = 10/111 (9%)
Query: 461 LEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAA--LHGDKDQASRMEILQKFKS 518
+E + +D+GD + ++ + +I + +K L+G+ + R +I+ KF++
Sbjct: 331 MEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQN 390
Query: 519 G--VYHVLIATDVAARGLDIKSIKSVVNFDIARDMDM------HVHRIGRT 561
V ++++ G+++ S V++FD + + V+RIG+T
Sbjct: 391 NPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQT 441
>pdb|3IQY|A Chain A, Active Site Mutants Of B. Subtilis Seca
Length = 841
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 52/129 (40%), Gaps = 12/129 (9%)
Query: 473 VLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAAR 532
VLV T + I L KG L+ + I + + G V IAT++A +
Sbjct: 432 VLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKGA--VTIATNMAGK 489
Query: 533 GLDIK---SIKSVVNFDIARDMDMHVHRI-----GRTGRAGDKDGTAYTLVTQKE--ARF 582
G DIK +K + + RI GR+GR GD T + L + E RF
Sbjct: 490 GTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDELMRRF 549
Query: 583 AGELVNSLI 591
E +++
Sbjct: 550 GAERTMAML 558
>pdb|1Z5Z|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal Domain
pdb|1Z5Z|B Chain B, Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal Domain
Length = 271
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/111 (20%), Positives = 54/111 (48%), Gaps = 10/111 (9%)
Query: 461 LEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAA--LHGDKDQASRMEILQKFKS 518
+E + +D+GD + ++ + +I + +K L+G+ + R +I+ KF++
Sbjct: 102 MEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQN 161
Query: 519 G--VYHVLIATDVAARGLDIKSIKSVVNFDIARDMDM------HVHRIGRT 561
V ++++ G+++ S V++FD + + V+RIG+T
Sbjct: 162 NPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQT 212
>pdb|1Z63|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX
With Dsdna
pdb|1Z63|B Chain B, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX
With Dsdna
Length = 500
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/104 (21%), Positives = 50/104 (48%), Gaps = 10/104 (9%)
Query: 468 IDDGDVLVFASKKTTVDEIESQLAQKGFKAAA--LHGDKDQASRMEILQKFKSG--VYHV 523
+D+GD + ++ +I + +K L+G+ + R +I+ KF++ V +
Sbjct: 338 LDEGDKIAIFTQFVDXGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFI 397
Query: 524 LIATDVAARGLDIKSIKSVVNFDIARDMDM------HVHRIGRT 561
+++ G+++ S V++FD + + V+RIG+T
Sbjct: 398 VLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQT 441
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,222,198
Number of Sequences: 62578
Number of extensions: 731264
Number of successful extensions: 2002
Number of sequences better than 100.0: 120
Number of HSP's better than 100.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1721
Number of HSP's gapped (non-prelim): 145
length of query: 630
length of database: 14,973,337
effective HSP length: 105
effective length of query: 525
effective length of database: 8,402,647
effective search space: 4411389675
effective search space used: 4411389675
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)