Query 006824
Match_columns 630
No_of_seqs 464 out of 3197
Neff 8.9
Searched_HMMs 46136
Date Thu Mar 28 15:01:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006824.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006824hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0339 ATP-dependent RNA heli 100.0 4E-108 8E-113 821.3 40.8 594 1-612 1-609 (731)
2 KOG0331 ATP-dependent RNA heli 100.0 3.9E-80 8.4E-85 644.0 35.8 428 180-609 16-479 (519)
3 KOG0336 ATP-dependent RNA heli 100.0 7.5E-79 1.6E-83 595.9 31.0 430 179-611 166-605 (629)
4 KOG0333 U5 snRNP-like RNA heli 100.0 1.9E-77 4.1E-82 603.5 36.2 496 102-607 128-654 (673)
5 KOG0334 RNA helicase [RNA proc 100.0 1.5E-77 3.2E-82 653.1 34.9 446 166-612 305-754 (997)
6 PTZ00110 helicase; Provisional 100.0 7.4E-74 1.6E-78 629.3 50.8 438 170-609 74-515 (545)
7 KOG0341 DEAD-box protein abstr 100.0 6.6E-76 1.4E-80 571.6 21.9 425 179-607 124-558 (610)
8 PLN00206 DEAD-box ATP-dependen 100.0 9.9E-69 2.1E-73 587.2 48.8 431 172-605 66-502 (518)
9 KOG0330 ATP-dependent RNA heli 100.0 4.3E-69 9.3E-74 526.1 32.5 366 223-596 59-425 (476)
10 KOG0335 ATP-dependent RNA heli 100.0 1.3E-67 2.7E-72 540.7 31.7 396 212-609 61-475 (482)
11 KOG0338 ATP-dependent RNA heli 100.0 4.4E-67 9.5E-72 526.4 31.0 375 224-602 180-562 (691)
12 COG0513 SrmB Superfamily II DN 100.0 9.5E-66 2.1E-70 559.7 42.5 374 225-603 29-409 (513)
13 KOG0328 Predicted ATP-dependen 100.0 2.7E-64 5.8E-69 472.3 28.6 377 221-604 23-399 (400)
14 KOG0342 ATP-dependent RNA heli 100.0 1.4E-61 3.1E-66 487.1 30.5 361 224-587 81-446 (543)
15 PRK04837 ATP-dependent RNA hel 100.0 2.3E-60 4.9E-65 511.8 41.6 367 224-593 7-377 (423)
16 KOG0340 ATP-dependent RNA heli 100.0 2.2E-61 4.9E-66 466.6 28.7 364 223-593 5-376 (442)
17 PRK10590 ATP-dependent RNA hel 100.0 1.7E-59 3.7E-64 508.3 43.1 364 226-592 2-366 (456)
18 KOG0345 ATP-dependent RNA heli 100.0 8.4E-60 1.8E-64 470.9 34.9 355 225-582 4-368 (567)
19 PRK04537 ATP-dependent RNA hel 100.0 4.8E-59 1E-63 513.6 43.5 366 224-592 8-378 (572)
20 PRK11776 ATP-dependent RNA hel 100.0 5.1E-59 1.1E-63 506.7 42.9 359 224-591 3-362 (460)
21 PRK11634 ATP-dependent RNA hel 100.0 1.6E-58 3.4E-63 512.1 43.0 360 224-591 5-365 (629)
22 KOG0343 RNA Helicase [RNA proc 100.0 3.1E-59 6.6E-64 473.8 32.3 360 222-586 66-431 (758)
23 PRK11192 ATP-dependent RNA hel 100.0 5.7E-58 1.2E-62 495.4 44.0 364 226-592 2-366 (434)
24 KOG0326 ATP-dependent RNA heli 100.0 1E-60 2.2E-65 455.2 17.7 368 224-600 84-451 (459)
25 PRK01297 ATP-dependent RNA hel 100.0 3E-56 6.4E-61 486.2 45.5 379 222-603 84-469 (475)
26 KOG0346 RNA helicase [RNA proc 100.0 2.3E-57 5.1E-62 449.3 28.6 366 225-592 19-424 (569)
27 KOG0348 ATP-dependent RNA heli 100.0 3.3E-57 7.1E-62 457.7 29.7 366 221-588 132-564 (708)
28 PTZ00424 helicase 45; Provisio 100.0 3.4E-55 7.3E-60 470.2 41.5 369 224-599 27-395 (401)
29 KOG0344 ATP-dependent RNA heli 100.0 5.8E-56 1.3E-60 457.0 28.2 401 204-606 111-523 (593)
30 KOG0347 RNA helicase [RNA proc 100.0 3E-56 6.5E-61 452.0 20.8 370 221-594 177-586 (731)
31 KOG0332 ATP-dependent RNA heli 100.0 1.2E-52 2.6E-57 408.3 30.2 372 222-603 87-470 (477)
32 KOG0327 Translation initiation 100.0 4E-53 8.7E-58 415.8 25.5 368 224-601 25-393 (397)
33 KOG0337 ATP-dependent RNA heli 100.0 7E-54 1.5E-58 422.8 19.6 362 224-591 20-381 (529)
34 KOG4284 DEAD box protein [Tran 100.0 7.3E-52 1.6E-56 426.1 24.6 356 217-580 17-381 (980)
35 TIGR03817 DECH_helic helicase/ 100.0 1.5E-49 3.3E-54 448.8 39.9 345 231-591 20-401 (742)
36 KOG0350 DEAD-box ATP-dependent 100.0 5.2E-49 1.1E-53 395.8 25.5 354 232-592 144-554 (620)
37 PLN03137 ATP-dependent DNA hel 100.0 1.7E-47 3.6E-52 428.4 39.2 345 225-588 435-797 (1195)
38 TIGR00614 recQ_fam ATP-depende 100.0 7.4E-47 1.6E-51 410.8 35.9 327 242-589 6-344 (470)
39 PRK11057 ATP-dependent DNA hel 100.0 1.2E-44 2.6E-49 403.5 38.5 332 233-587 10-352 (607)
40 PRK02362 ski2-like helicase; P 100.0 7.5E-45 1.6E-49 415.1 33.9 338 226-579 2-398 (737)
41 PRK13767 ATP-dependent helicas 100.0 4.5E-44 9.8E-49 412.2 38.2 342 232-576 18-396 (876)
42 PRK00254 ski2-like helicase; P 100.0 5E-44 1.1E-48 407.4 34.7 339 226-579 2-389 (720)
43 TIGR01389 recQ ATP-dependent D 100.0 1.2E-43 2.6E-48 396.7 36.3 322 243-588 9-341 (591)
44 TIGR02621 cas3_GSU0051 CRISPR- 100.0 6E-43 1.3E-47 387.2 33.3 315 243-577 12-390 (844)
45 KOG0329 ATP-dependent RNA heli 100.0 1.9E-44 4.1E-49 334.0 14.1 335 223-600 40-378 (387)
46 TIGR00580 mfd transcription-re 100.0 1.3E-41 2.8E-46 387.5 39.8 334 232-592 436-786 (926)
47 PRK01172 ski2-like helicase; P 100.0 6.3E-42 1.4E-46 388.5 33.2 334 226-579 2-379 (674)
48 PRK10689 transcription-repair 100.0 9.8E-41 2.1E-45 388.1 40.8 316 237-578 591-919 (1147)
49 PRK10917 ATP-dependent DNA hel 100.0 2.5E-40 5.5E-45 372.6 41.2 338 234-597 248-608 (681)
50 TIGR00643 recG ATP-dependent D 100.0 9.1E-40 2E-44 365.8 39.3 348 235-607 224-595 (630)
51 COG1201 Lhr Lhr-like helicases 100.0 6.2E-40 1.3E-44 361.3 33.7 340 232-577 8-361 (814)
52 PRK09401 reverse gyrase; Revie 100.0 2.5E-39 5.4E-44 377.2 34.1 297 244-564 78-431 (1176)
53 PRK09751 putative ATP-dependen 100.0 6.4E-39 1.4E-43 374.3 34.0 303 267-572 1-379 (1490)
54 COG0514 RecQ Superfamily II DN 100.0 9.3E-39 2E-43 340.2 31.0 325 243-589 13-348 (590)
55 PHA02653 RNA helicase NPH-II; 100.0 1.1E-38 2.5E-43 351.8 30.5 313 250-581 167-517 (675)
56 PRK12898 secA preprotein trans 100.0 9.1E-38 2E-42 339.1 32.1 318 246-581 102-589 (656)
57 PRK14701 reverse gyrase; Provi 100.0 9.5E-38 2.1E-42 370.9 32.2 328 236-586 68-464 (1638)
58 KOG0349 Putative DEAD-box RNA 100.0 8.4E-39 1.8E-43 316.2 19.2 278 298-576 286-613 (725)
59 PHA02558 uvsW UvsW helicase; P 100.0 1.6E-37 3.4E-42 339.5 30.0 306 245-572 112-447 (501)
60 TIGR01587 cas3_core CRISPR-ass 100.0 3E-37 6.6E-42 325.8 29.8 302 264-579 1-337 (358)
61 TIGR01970 DEAH_box_HrpB ATP-de 100.0 4.7E-37 1E-41 346.9 30.8 305 251-581 6-339 (819)
62 COG1202 Superfamily II helicas 100.0 1.5E-37 3.3E-42 317.5 22.0 337 227-578 196-553 (830)
63 COG1111 MPH1 ERCC4-like helica 100.0 4.7E-36 1E-40 305.4 30.8 324 244-578 12-481 (542)
64 PRK11664 ATP-dependent RNA hel 100.0 9.7E-37 2.1E-41 345.2 28.6 303 252-580 10-341 (812)
65 PRK09200 preprotein translocas 100.0 6.4E-36 1.4E-40 331.5 31.9 320 244-581 76-544 (790)
66 TIGR01054 rgy reverse gyrase. 100.0 1E-35 2.2E-40 347.5 33.9 291 236-549 67-409 (1171)
67 TIGR03714 secA2 accessory Sec 100.0 2.6E-35 5.5E-40 323.5 33.2 320 247-581 68-540 (762)
68 COG1204 Superfamily II helicas 100.0 3.8E-36 8.2E-41 336.1 27.1 336 231-578 15-408 (766)
69 TIGR00963 secA preprotein tran 100.0 1.1E-35 2.4E-40 324.2 27.0 317 247-581 56-520 (745)
70 PRK13766 Hef nuclease; Provisi 100.0 5.9E-35 1.3E-39 337.7 33.6 325 244-579 12-480 (773)
71 KOG2340 Uncharacterized conser 100.0 1.4E-34 3.1E-39 293.2 20.7 346 244-590 213-680 (698)
72 TIGR03158 cas3_cyano CRISPR-as 100.0 2.6E-33 5.6E-38 293.2 29.9 290 251-562 1-357 (357)
73 KOG0354 DEAD-box like helicase 100.0 4.2E-33 9E-38 300.0 26.8 321 246-578 61-529 (746)
74 COG1205 Distinct helicase fami 100.0 1.3E-32 2.8E-37 312.1 31.5 334 233-576 56-420 (851)
75 TIGR00603 rad25 DNA repair hel 100.0 1.4E-32 3.1E-37 302.0 28.6 321 246-594 254-625 (732)
76 KOG0351 ATP-dependent DNA heli 100.0 2.9E-32 6.3E-37 306.7 27.5 329 241-590 258-604 (941)
77 KOG0952 DNA/RNA helicase MER3/ 100.0 2.6E-32 5.6E-37 296.3 25.9 332 243-583 106-496 (1230)
78 KOG0352 ATP-dependent DNA heli 100.0 2E-32 4.4E-37 270.9 20.4 332 236-588 7-372 (641)
79 PRK11131 ATP-dependent RNA hel 100.0 4.9E-31 1.1E-35 303.2 31.2 302 251-581 78-414 (1294)
80 PRK04914 ATP-dependent helicas 100.0 1.5E-30 3.3E-35 295.7 34.2 333 246-591 151-616 (956)
81 KOG0353 ATP-dependent DNA heli 100.0 1.8E-30 3.8E-35 253.4 23.8 359 229-605 75-493 (695)
82 cd00268 DEADc DEAD-box helicas 100.0 3.2E-30 6.9E-35 250.0 25.3 202 227-431 1-202 (203)
83 PRK05580 primosome assembly pr 100.0 3.7E-29 8.1E-34 281.0 34.2 312 246-579 143-550 (679)
84 COG1200 RecG RecG-like helicas 100.0 9.2E-29 2E-33 262.8 33.8 345 234-604 249-617 (677)
85 PRK13104 secA preprotein trans 100.0 2E-29 4.3E-34 278.9 28.8 329 247-593 82-606 (896)
86 TIGR01967 DEAH_box_HrpA ATP-de 100.0 1.1E-29 2.4E-34 293.2 27.5 305 253-581 73-407 (1283)
87 COG1061 SSL2 DNA or RNA helica 100.0 3.1E-29 6.7E-34 268.9 26.9 294 246-564 35-376 (442)
88 PRK12899 secA preprotein trans 100.0 1.5E-28 3.2E-33 271.3 31.4 180 194-385 32-228 (970)
89 PRK09694 helicase Cas3; Provis 100.0 6.8E-28 1.5E-32 272.5 37.0 353 245-607 284-726 (878)
90 PF06862 DUF1253: Protein of u 100.0 1.1E-28 2.4E-33 256.3 27.9 292 297-589 36-426 (442)
91 PRK12904 preprotein translocas 100.0 2.4E-28 5.2E-33 270.3 27.4 317 247-581 81-576 (830)
92 KOG0947 Cytoplasmic exosomal R 100.0 2.1E-28 4.5E-33 263.1 22.5 311 246-578 296-723 (1248)
93 PLN03142 Probable chromatin-re 100.0 1.2E-27 2.5E-32 273.0 29.5 320 246-578 168-599 (1033)
94 KOG0951 RNA helicase BRR2, DEA 100.0 5.4E-28 1.2E-32 265.7 24.9 356 231-599 295-717 (1674)
95 COG1197 Mfd Transcription-repa 100.0 1E-26 2.2E-31 260.2 34.6 360 195-579 535-914 (1139)
96 PRK12906 secA preprotein trans 100.0 2.5E-27 5.4E-32 261.2 28.5 317 247-581 80-556 (796)
97 KOG0385 Chromatin remodeling c 100.0 2.2E-27 4.7E-32 250.6 25.2 317 246-579 166-600 (971)
98 TIGR00595 priA primosomal prot 100.0 8.7E-27 1.9E-31 252.9 29.5 286 266-575 1-378 (505)
99 PRK13107 preprotein translocas 99.9 1.6E-26 3.4E-31 255.1 24.8 317 247-581 82-594 (908)
100 PRK11448 hsdR type I restricti 99.9 2.5E-25 5.5E-30 258.7 32.7 303 246-565 412-801 (1123)
101 COG4098 comFA Superfamily II D 99.9 6.2E-25 1.4E-29 213.1 29.1 316 246-590 96-427 (441)
102 KOG0948 Nuclear exosomal RNA h 99.9 8.9E-27 1.9E-31 244.9 15.9 310 246-578 128-539 (1041)
103 KOG1002 Nucleotide excision re 99.9 3.3E-26 7.2E-31 230.5 19.1 364 187-588 148-757 (791)
104 KOG0387 Transcription-coupled 99.9 3.5E-25 7.6E-30 235.2 24.4 315 246-578 204-658 (923)
105 KOG0950 DNA polymerase theta/e 99.9 6.5E-26 1.4E-30 246.1 19.2 342 232-588 207-621 (1008)
106 PF00270 DEAD: DEAD/DEAH box h 99.9 4.2E-25 9E-30 207.4 20.3 166 249-420 1-169 (169)
107 COG4581 Superfamily II RNA hel 99.9 2.9E-25 6.3E-30 248.6 22.2 311 247-577 119-536 (1041)
108 KOG0384 Chromodomain-helicase 99.9 2.2E-25 4.7E-30 246.2 18.2 376 184-579 310-812 (1373)
109 KOG0389 SNF2 family DNA-depend 99.9 5.4E-23 1.2E-27 218.4 20.7 322 247-580 399-890 (941)
110 PRK12900 secA preprotein trans 99.9 1.8E-22 3.8E-27 224.0 22.8 140 453-595 580-732 (1025)
111 COG1203 CRISPR-associated heli 99.9 2.7E-22 5.8E-27 227.8 24.6 323 247-578 195-550 (733)
112 COG1643 HrpA HrpA-like helicas 99.9 3.4E-22 7.5E-27 223.0 24.8 308 250-580 53-389 (845)
113 KOG0392 SNF2 family DNA-depend 99.9 2.4E-22 5.2E-27 221.3 21.9 325 246-578 974-1454(1549)
114 KOG0922 DEAH-box RNA helicase 99.9 2.8E-21 6.1E-26 203.9 22.7 308 250-581 54-393 (674)
115 TIGR01407 dinG_rel DnaQ family 99.9 5.2E-20 1.1E-24 213.4 33.4 346 232-591 231-829 (850)
116 TIGR00631 uvrb excinuclease AB 99.9 4.1E-20 8.9E-25 205.5 29.3 131 454-586 425-561 (655)
117 PRK12326 preprotein translocas 99.9 2.7E-20 5.8E-25 201.4 26.3 315 247-580 78-549 (764)
118 KOG0390 DNA repair protein, SN 99.9 3.4E-20 7.3E-25 202.8 25.9 322 247-578 238-707 (776)
119 COG1110 Reverse gyrase [DNA re 99.9 1E-19 2.2E-24 199.1 29.1 285 238-549 73-417 (1187)
120 KOG0391 SNF2 family DNA-depend 99.9 6.4E-20 1.4E-24 200.3 26.9 126 455-580 1260-1389(1958)
121 TIGR00348 hsdR type I site-spe 99.9 1.2E-19 2.6E-24 204.2 28.6 312 248-577 239-650 (667)
122 KOG0923 mRNA splicing factor A 99.9 1.9E-20 4E-25 195.5 20.2 311 247-579 265-607 (902)
123 smart00487 DEXDc DEAD-like hel 99.8 1.7E-19 3.7E-24 173.1 22.2 187 243-435 4-192 (201)
124 KOG0926 DEAH-box RNA helicase 99.8 2.4E-20 5.2E-25 197.9 16.8 310 251-578 260-704 (1172)
125 PRK13103 secA preprotein trans 99.8 1.7E-19 3.6E-24 200.0 24.0 329 247-594 82-611 (913)
126 COG4096 HsdR Type I site-speci 99.8 5.4E-20 1.2E-24 198.5 19.2 297 246-565 164-526 (875)
127 PRK05298 excinuclease ABC subu 99.8 1E-18 2.2E-23 196.0 29.6 147 455-603 430-591 (652)
128 KOG0920 ATP-dependent RNA heli 99.8 1.8E-19 4E-24 200.3 23.2 315 248-579 174-545 (924)
129 KOG0924 mRNA splicing factor A 99.8 1.4E-19 3.1E-24 189.2 20.0 309 247-578 356-697 (1042)
130 PRK12903 secA preprotein trans 99.8 5.9E-19 1.3E-23 193.5 25.3 329 247-594 78-560 (925)
131 COG1198 PriA Primosomal protei 99.8 3.6E-18 7.9E-23 188.3 30.4 312 246-579 197-604 (730)
132 KOG1000 Chromatin remodeling p 99.8 3E-18 6.6E-23 173.7 26.4 313 246-576 197-600 (689)
133 KOG0388 SNF2 family DNA-depend 99.8 4.7E-19 1E-23 185.7 20.7 128 453-580 1026-1156(1185)
134 PRK07246 bifunctional ATP-depe 99.8 2.6E-17 5.6E-22 188.4 29.8 326 247-591 245-798 (820)
135 CHL00122 secA preprotein trans 99.8 6.2E-18 1.3E-22 186.8 23.4 275 247-537 76-491 (870)
136 KOG0949 Predicted helicase, DE 99.8 2.7E-18 5.8E-23 186.1 19.3 159 247-415 511-673 (1330)
137 COG0556 UvrB Helicase subunit 99.8 2.2E-17 4.8E-22 169.6 24.5 164 404-577 387-556 (663)
138 KOG1123 RNA polymerase II tran 99.8 3.3E-19 7.2E-24 180.7 10.9 319 246-594 301-671 (776)
139 COG4889 Predicted helicase [Ge 99.8 1.4E-18 3.1E-23 185.8 13.9 350 235-595 149-618 (1518)
140 KOG0386 Chromatin remodeling c 99.8 2.9E-18 6.2E-23 186.9 13.7 313 246-576 393-836 (1157)
141 PRK12902 secA preprotein trans 99.7 3.7E-16 8.1E-21 172.4 26.0 275 247-537 85-506 (939)
142 PRK08074 bifunctional ATP-depe 99.7 6.3E-16 1.4E-20 180.3 27.7 123 469-591 751-908 (928)
143 TIGR03117 cas_csf4 CRISPR-asso 99.7 5.3E-15 1.1E-19 162.3 32.9 114 469-584 469-623 (636)
144 cd00079 HELICc Helicase superf 99.7 4.9E-17 1.1E-21 145.4 13.7 119 455-574 12-131 (131)
145 KOG4150 Predicted ATP-dependen 99.7 1.9E-16 4.1E-21 162.9 15.1 345 239-593 278-657 (1034)
146 PF00271 Helicase_C: Helicase 99.7 5.9E-17 1.3E-21 131.1 9.0 78 488-565 1-78 (78)
147 KOG0953 Mitochondrial RNA heli 99.7 1.7E-15 3.6E-20 156.3 21.2 277 265-588 194-486 (700)
148 cd00046 DEXDc DEAD-like helica 99.7 1E-15 2.2E-20 138.1 17.1 144 263-413 1-144 (144)
149 KOG0925 mRNA splicing factor A 99.7 9.1E-16 2E-20 155.6 17.9 327 224-578 24-387 (699)
150 KOG4439 RNA polymerase II tran 99.7 1.7E-15 3.8E-20 159.7 18.2 109 470-578 746-858 (901)
151 KOG1015 Transcription regulato 99.6 7.7E-15 1.7E-19 158.6 18.6 120 458-577 1129-1276(1567)
152 COG1199 DinG Rad3-related DNA 99.6 4E-14 8.6E-19 161.3 25.4 107 470-579 479-619 (654)
153 PRK12901 secA preprotein trans 99.6 2.7E-14 5.9E-19 159.3 22.8 125 452-580 609-743 (1112)
154 PF04851 ResIII: Type III rest 99.6 3.1E-15 6.8E-20 142.1 12.4 153 247-415 3-184 (184)
155 COG0553 HepA Superfamily II DN 99.6 4.8E-14 1E-18 166.7 25.2 325 246-579 337-823 (866)
156 PRK11747 dinG ATP-dependent DN 99.6 1.1E-12 2.4E-17 148.6 31.2 117 470-590 534-688 (697)
157 KOG0951 RNA helicase BRR2, DEA 99.6 5.1E-14 1.1E-18 156.8 19.0 313 247-586 1143-1502(1674)
158 TIGR00604 rad3 DNA repair heli 99.6 1.2E-12 2.5E-17 149.6 30.2 74 244-322 7-84 (705)
159 smart00490 HELICc helicase sup 99.6 2.1E-14 4.5E-19 116.9 9.5 81 485-565 2-82 (82)
160 TIGR02562 cas3_yersinia CRISPR 99.5 2E-12 4.4E-17 145.3 21.3 308 248-565 409-880 (1110)
161 PRK14873 primosome assembly pr 99.5 5.7E-12 1.2E-16 140.4 22.6 275 271-578 169-539 (665)
162 PF02399 Herpes_ori_bp: Origin 99.4 1.6E-11 3.4E-16 135.0 22.4 289 265-578 52-388 (824)
163 COG0653 SecA Preprotein transl 99.3 7E-11 1.5E-15 130.8 20.2 320 247-579 78-546 (822)
164 PF00176 SNF2_N: SNF2 family N 99.3 1.6E-11 3.6E-16 126.2 12.4 158 251-415 1-174 (299)
165 COG0610 Type I site-specific r 99.2 1.8E-09 4E-14 125.7 24.6 297 263-576 274-651 (962)
166 PF07652 Flavi_DEAD: Flaviviru 99.1 7.5E-11 1.6E-15 103.6 6.0 134 262-416 4-139 (148)
167 smart00489 DEXDc3 DEAD-like he 99.1 1.7E-09 3.6E-14 110.0 14.0 73 247-321 8-84 (289)
168 smart00488 DEXDc2 DEAD-like he 99.1 1.7E-09 3.6E-14 110.0 14.0 73 247-321 8-84 (289)
169 KOG1016 Predicted DNA helicase 99.0 2.4E-09 5.2E-14 114.6 14.0 108 471-578 720-849 (1387)
170 PF07517 SecA_DEAD: SecA DEAD- 99.0 1.9E-08 4.1E-13 99.6 17.3 128 246-385 76-210 (266)
171 KOG1001 Helicase-like transcri 98.9 4.9E-09 1.1E-13 116.4 12.1 106 471-576 540-647 (674)
172 KOG0921 Dosage compensation co 98.8 3.8E-08 8.2E-13 107.5 11.8 309 255-578 386-774 (1282)
173 TIGR00596 rad1 DNA repair prot 98.6 5.6E-07 1.2E-11 102.4 15.9 70 345-414 4-73 (814)
174 KOG1133 Helicase of the DEAD s 98.6 2E-05 4.4E-10 84.9 25.9 77 470-549 629-720 (821)
175 KOG0952 DNA/RNA helicase MER3/ 98.6 1.4E-08 3.1E-13 112.8 0.4 227 248-487 928-1170(1230)
176 PRK15483 type III restriction- 98.5 1.8E-06 3.9E-11 98.5 14.8 74 520-593 501-583 (986)
177 KOG1131 RNA polymerase II tran 98.5 2.9E-05 6.2E-10 81.0 21.1 81 470-551 530-625 (755)
178 COG3587 Restriction endonuclea 98.4 9.8E-06 2.1E-10 89.2 16.3 74 520-593 483-568 (985)
179 PF13086 AAA_11: AAA domain; P 98.4 5.8E-06 1.3E-10 81.4 13.7 73 247-320 1-75 (236)
180 PF13872 AAA_34: P-loop contai 98.3 3.3E-06 7.3E-11 83.9 11.2 171 230-419 26-226 (303)
181 PF13307 Helicase_C_2: Helicas 98.3 1.9E-06 4.2E-11 80.3 7.4 103 470-574 9-147 (167)
182 PF13604 AAA_30: AAA domain; P 98.2 4.6E-06 9.9E-11 79.9 9.4 123 247-412 1-130 (196)
183 KOG1802 RNA helicase nonsense 98.2 1.3E-05 2.8E-10 85.8 11.7 84 239-333 402-485 (935)
184 PF02562 PhoH: PhoH-like prote 98.2 8.8E-06 1.9E-10 77.5 9.1 141 246-411 3-154 (205)
185 PF12340 DUF3638: Protein of u 98.1 6.9E-05 1.5E-09 72.0 14.2 152 225-386 3-186 (229)
186 KOG0383 Predicted helicase [Ge 98.0 2.3E-07 4.9E-12 102.1 -6.0 77 456-533 616-696 (696)
187 TIGR00376 DNA helicase, putati 97.9 0.00011 2.3E-09 82.9 12.9 68 246-321 156-224 (637)
188 PRK10536 hypothetical protein; 97.9 0.00027 5.8E-09 69.4 13.8 141 244-409 56-209 (262)
189 PF09848 DUF2075: Uncharacteri 97.8 8.7E-05 1.9E-09 78.1 10.3 108 264-399 3-117 (352)
190 KOG1803 DNA helicase [Replicat 97.8 5E-05 1.1E-09 81.1 8.2 66 246-319 184-250 (649)
191 KOG1132 Helicase of the DEAD s 97.8 0.00011 2.3E-09 81.6 10.2 103 471-574 562-719 (945)
192 PRK10875 recD exonuclease V su 97.7 0.0004 8.6E-09 77.6 13.4 142 249-412 154-301 (615)
193 TIGR01447 recD exodeoxyribonuc 97.7 0.00043 9.2E-09 77.1 13.7 142 250-412 148-295 (586)
194 TIGR01448 recD_rel helicase, p 97.6 0.0006 1.3E-08 78.1 13.3 131 246-412 322-452 (720)
195 PF13245 AAA_19: Part of AAA d 97.5 0.00049 1.1E-08 54.7 7.2 53 262-318 10-62 (76)
196 smart00492 HELICc3 helicase su 97.5 0.0013 2.8E-08 59.2 10.8 93 482-574 3-135 (141)
197 PF13871 Helicase_C_4: Helicas 97.4 0.00066 1.4E-08 67.5 9.1 82 511-592 52-144 (278)
198 PF13401 AAA_22: AAA domain; P 97.4 0.00077 1.7E-08 59.8 8.2 37 374-413 89-125 (131)
199 TIGR02768 TraA_Ti Ti-type conj 97.3 0.0031 6.7E-08 72.7 14.8 122 246-410 351-474 (744)
200 KOG1805 DNA replication helica 97.3 0.0012 2.6E-08 74.3 10.9 138 229-386 655-810 (1100)
201 PRK13889 conjugal transfer rel 97.3 0.0019 4.2E-08 75.5 13.0 124 246-412 345-470 (988)
202 smart00491 HELICc2 helicase su 97.3 0.0019 4.1E-08 58.2 9.6 93 482-574 3-136 (142)
203 PRK08181 transposase; Validate 97.2 0.0053 1.2E-07 61.5 13.1 121 248-417 88-213 (269)
204 PF05970 PIF1: PIF1-like helic 97.2 0.00079 1.7E-08 71.1 7.1 60 247-314 1-66 (364)
205 COG1875 NYN ribonuclease and A 97.1 0.0044 9.5E-08 62.9 10.9 142 244-410 225-385 (436)
206 PF00580 UvrD-helicase: UvrD/R 97.1 0.0017 3.7E-08 66.9 8.6 123 248-382 1-125 (315)
207 PRK04296 thymidine kinase; Pro 97.1 0.0041 8.8E-08 59.3 10.1 110 263-413 3-115 (190)
208 PRK14974 cell division protein 97.0 0.0065 1.4E-07 62.8 12.0 132 263-425 141-276 (336)
209 COG3421 Uncharacterized protei 97.0 0.001 2.2E-08 71.0 6.0 167 267-443 2-193 (812)
210 TIGR02760 TraI_TIGR conjugativ 97.0 0.065 1.4E-06 68.0 22.6 237 247-520 429-686 (1960)
211 PRK13826 Dtr system oriT relax 97.0 0.013 2.7E-07 69.3 14.8 137 232-412 367-505 (1102)
212 PRK12723 flagellar biosynthesi 96.8 0.017 3.6E-07 61.1 13.2 131 262-424 174-309 (388)
213 cd00009 AAA The AAA+ (ATPases 96.8 0.016 3.5E-07 51.7 11.4 17 262-278 19-35 (151)
214 KOG0298 DEAD box-containing he 96.8 0.0044 9.5E-08 71.7 8.9 153 261-420 373-557 (1394)
215 PF14617 CMS1: U3-containing 9 96.7 0.0033 7.2E-08 61.8 6.7 87 296-383 124-212 (252)
216 PRK14722 flhF flagellar biosyn 96.7 0.012 2.6E-07 61.6 10.5 131 261-425 136-270 (374)
217 PRK06921 hypothetical protein; 96.6 0.025 5.4E-07 56.9 12.4 45 261-313 116-160 (266)
218 PF00448 SRP54: SRP54-type pro 96.6 0.018 3.9E-07 55.0 10.3 131 265-424 4-136 (196)
219 PRK06526 transposase; Provisio 96.6 0.011 2.4E-07 58.9 9.2 47 370-416 157-204 (254)
220 COG1419 FlhF Flagellar GTP-bin 96.5 0.051 1.1E-06 56.7 13.4 135 260-426 201-337 (407)
221 PRK07952 DNA replication prote 96.4 0.063 1.4E-06 53.1 13.4 49 370-418 160-210 (244)
222 PRK05642 DNA replication initi 96.4 0.018 3.9E-07 56.8 9.4 46 370-415 95-141 (234)
223 PRK08116 hypothetical protein; 96.4 0.067 1.5E-06 53.8 13.6 48 370-418 176-226 (268)
224 PHA02533 17 large terminase pr 96.4 0.021 4.6E-07 63.0 10.6 148 247-413 59-210 (534)
225 PF03354 Terminase_1: Phage Te 96.3 0.0091 2E-07 65.5 7.7 150 250-411 1-161 (477)
226 PRK05703 flhF flagellar biosyn 96.3 0.097 2.1E-06 56.3 15.0 129 262-424 221-354 (424)
227 PRK12377 putative replication 96.3 0.027 5.8E-07 55.8 9.9 49 370-418 161-211 (248)
228 TIGR01075 uvrD DNA helicase II 96.2 0.031 6.6E-07 64.7 11.2 109 246-383 3-114 (715)
229 smart00382 AAA ATPases associa 96.2 0.012 2.7E-07 52.0 6.4 41 262-310 2-42 (148)
230 PRK06835 DNA replication prote 96.1 0.097 2.1E-06 54.2 13.4 48 370-417 244-293 (329)
231 PRK11889 flhF flagellar biosyn 96.1 0.11 2.4E-06 54.4 13.6 129 263-425 242-375 (436)
232 PRK06893 DNA replication initi 96.1 0.015 3.3E-07 57.2 6.9 47 370-416 89-137 (229)
233 PRK11773 uvrD DNA-dependent he 96.0 0.039 8.4E-07 63.9 11.3 71 246-322 8-78 (721)
234 PRK08727 hypothetical protein; 95.9 0.029 6.3E-07 55.3 8.3 48 370-417 91-140 (233)
235 PRK14087 dnaA chromosomal repl 95.9 0.05 1.1E-06 59.0 10.7 110 263-417 142-253 (450)
236 KOG0989 Replication factor C, 95.9 0.036 7.9E-07 55.2 8.4 47 367-414 124-170 (346)
237 COG1484 DnaC DNA replication p 95.8 0.045 9.8E-07 54.6 9.3 49 260-317 103-151 (254)
238 TIGR01547 phage_term_2 phage t 95.8 0.037 8E-07 59.3 9.3 145 264-425 3-152 (396)
239 cd01120 RecA-like_NTPases RecA 95.8 0.068 1.5E-06 48.8 9.7 45 370-414 83-137 (165)
240 PRK08084 DNA replication initi 95.7 0.043 9.3E-07 54.2 8.5 44 372-415 97-142 (235)
241 COG2805 PilT Tfp pilus assembl 95.7 0.016 3.5E-07 57.4 5.3 54 218-290 99-152 (353)
242 TIGR01074 rep ATP-dependent DN 95.7 0.052 1.1E-06 62.4 10.3 70 248-323 2-71 (664)
243 TIGR03420 DnaA_homol_Hda DnaA 95.7 0.052 1.1E-06 53.1 8.8 42 373-414 91-133 (226)
244 PF05127 Helicase_RecD: Helica 95.6 0.0055 1.2E-07 57.0 1.7 124 266-414 1-124 (177)
245 cd01124 KaiC KaiC is a circadi 95.6 0.061 1.3E-06 50.8 8.8 48 265-321 2-49 (187)
246 TIGR00362 DnaA chromosomal rep 95.6 0.095 2.1E-06 56.3 11.2 47 372-418 199-247 (405)
247 PRK08903 DnaA regulatory inact 95.6 0.051 1.1E-06 53.3 8.4 43 372-415 90-133 (227)
248 PRK00149 dnaA chromosomal repl 95.4 0.11 2.4E-06 56.6 11.3 48 371-418 210-259 (450)
249 PRK11054 helD DNA helicase IV; 95.4 0.062 1.3E-06 61.3 9.5 72 246-323 195-266 (684)
250 PRK10919 ATP-dependent DNA hel 95.4 0.03 6.5E-07 64.1 7.1 71 247-323 2-72 (672)
251 PRK12422 chromosomal replicati 95.4 0.12 2.7E-06 55.8 11.2 50 371-420 201-252 (445)
252 PRK14086 dnaA chromosomal repl 95.3 0.12 2.5E-06 57.5 10.5 49 370-418 375-425 (617)
253 TIGR00064 ftsY signal recognit 95.1 0.31 6.6E-06 49.2 12.5 132 263-425 73-214 (272)
254 TIGR01073 pcrA ATP-dependent D 95.1 0.11 2.4E-06 60.3 10.6 110 246-383 3-114 (726)
255 PRK14712 conjugal transfer nic 95.1 0.16 3.5E-06 62.3 12.1 63 246-314 834-900 (1623)
256 PRK12727 flagellar biosynthesi 95.1 0.41 8.9E-06 52.2 13.7 129 261-424 349-481 (559)
257 PRK10917 ATP-dependent DNA hel 95.1 0.067 1.4E-06 61.4 8.4 98 447-544 286-389 (681)
258 PRK13709 conjugal transfer nic 95.0 0.23 4.9E-06 61.8 13.2 65 246-314 966-1032(1747)
259 PRK05707 DNA polymerase III su 95.0 0.15 3.2E-06 52.9 10.2 42 247-289 3-48 (328)
260 PRK00771 signal recognition pa 95.0 0.29 6.2E-06 52.7 12.5 52 373-424 176-228 (437)
261 TIGR02785 addA_Gpos recombinat 95.0 0.18 3.9E-06 61.8 12.3 124 247-383 1-126 (1232)
262 PRK14723 flhF flagellar biosyn 95.0 0.18 3.8E-06 57.5 11.2 130 262-424 185-317 (767)
263 PRK06731 flhF flagellar biosyn 95.0 0.41 8.9E-06 48.0 12.8 131 261-425 74-209 (270)
264 KOG1513 Nuclear helicase MOP-3 94.9 0.04 8.7E-07 61.0 5.7 82 513-594 850-942 (1300)
265 COG0593 DnaA ATPase involved i 94.9 0.13 2.9E-06 54.2 9.4 47 372-418 175-223 (408)
266 PF00308 Bac_DnaA: Bacterial d 94.9 0.1 2.2E-06 50.9 7.9 48 370-417 95-144 (219)
267 PRK08939 primosomal protein Dn 94.7 0.21 4.6E-06 51.2 10.1 50 370-419 215-267 (306)
268 PHA03333 putative ATPase subun 94.6 0.78 1.7E-05 51.3 14.7 61 259-326 184-244 (752)
269 PRK08769 DNA polymerase III su 94.6 0.42 9.1E-06 49.2 12.1 43 246-289 3-52 (319)
270 PF05621 TniB: Bacterial TniB 94.6 0.13 2.9E-06 51.7 8.2 53 263-320 62-118 (302)
271 COG1435 Tdk Thymidine kinase [ 94.6 0.36 7.7E-06 45.3 10.3 105 263-400 5-109 (201)
272 COG1444 Predicted P-loop ATPas 94.6 0.34 7.4E-06 54.8 12.1 144 244-414 211-357 (758)
273 COG2256 MGS1 ATPase related to 94.6 0.16 3.4E-06 52.7 8.6 37 372-413 104-140 (436)
274 TIGR02881 spore_V_K stage V sp 94.6 0.33 7.2E-06 48.7 11.1 16 263-278 43-58 (261)
275 PTZ00112 origin recognition co 94.5 0.47 1E-05 54.4 12.9 41 371-412 868-909 (1164)
276 PRK06995 flhF flagellar biosyn 94.5 0.19 4.2E-06 54.5 9.8 21 261-281 255-275 (484)
277 PF00004 AAA: ATPase family as 94.5 0.087 1.9E-06 46.3 6.1 17 372-388 58-74 (132)
278 PRK05580 primosome assembly pr 94.4 0.19 4.2E-06 57.5 10.1 93 453-546 172-266 (679)
279 PRK14088 dnaA chromosomal repl 94.4 0.43 9.3E-06 51.7 12.3 50 372-421 194-245 (440)
280 TIGR01425 SRP54_euk signal rec 94.4 0.41 8.9E-06 51.1 11.8 131 264-424 102-235 (429)
281 PHA02544 44 clamp loader, smal 94.4 0.37 8E-06 49.8 11.3 39 372-410 100-138 (316)
282 PRK09183 transposase/IS protei 94.4 0.21 4.5E-06 50.0 9.0 21 258-278 98-118 (259)
283 PRK00411 cdc6 cell division co 94.3 0.34 7.3E-06 51.8 11.2 24 263-287 56-79 (394)
284 PRK12402 replication factor C 94.3 0.36 7.8E-06 50.3 11.1 40 371-412 124-163 (337)
285 COG1474 CDC6 Cdc6-related prot 94.2 1 2.3E-05 47.4 14.2 42 370-412 121-163 (366)
286 TIGR00643 recG ATP-dependent D 94.2 0.13 2.9E-06 58.5 8.1 94 451-544 264-363 (630)
287 PTZ00293 thymidine kinase; Pro 94.2 0.34 7.4E-06 46.5 9.6 38 262-307 4-41 (211)
288 cd01122 GP4d_helicase GP4d_hel 94.1 0.2 4.3E-06 50.5 8.5 117 259-387 27-155 (271)
289 PF13173 AAA_14: AAA domain 94.0 0.54 1.2E-05 41.4 10.1 38 372-413 61-98 (128)
290 PRK14964 DNA polymerase III su 94.0 0.33 7.2E-06 52.9 10.2 19 263-281 36-54 (491)
291 PRK13833 conjugal transfer pro 94.0 0.19 4.2E-06 51.7 8.0 64 240-311 123-187 (323)
292 TIGR00595 priA primosomal prot 93.9 0.18 3.8E-06 55.7 8.2 93 453-546 7-101 (505)
293 PRK08533 flagellar accessory p 93.9 0.75 1.6E-05 45.2 11.8 52 261-321 23-74 (230)
294 TIGR03499 FlhF flagellar biosy 93.9 0.31 6.7E-06 49.5 9.3 20 261-280 193-212 (282)
295 PRK13342 recombination factor 93.9 0.52 1.1E-05 50.7 11.6 37 372-413 92-128 (413)
296 PRK14721 flhF flagellar biosyn 93.9 0.43 9.2E-06 51.0 10.6 132 261-424 190-323 (420)
297 PF06745 KaiC: KaiC; InterPro 93.9 0.36 7.7E-06 47.2 9.5 128 261-413 18-160 (226)
298 PRK11331 5-methylcytosine-spec 93.9 0.18 3.8E-06 53.9 7.6 32 248-279 180-211 (459)
299 PRK07764 DNA polymerase III su 93.8 0.59 1.3E-05 54.4 12.4 42 371-414 119-160 (824)
300 TIGR00580 mfd transcription-re 93.7 0.18 3.9E-06 59.4 8.1 98 447-544 476-579 (926)
301 COG4626 Phage terminase-like p 93.7 0.48 1E-05 51.4 10.5 148 246-412 60-224 (546)
302 TIGR02760 TraI_TIGR conjugativ 93.7 0.33 7.2E-06 61.9 10.9 63 246-314 1018-1084(1960)
303 PF05876 Terminase_GpA: Phage 93.6 0.14 3.1E-06 57.0 6.8 125 246-385 15-147 (557)
304 COG0470 HolB ATPase involved i 93.5 0.41 9E-06 49.5 9.8 41 370-411 107-147 (325)
305 cd00984 DnaB_C DnaB helicase C 93.5 0.27 5.9E-06 48.6 8.0 110 261-385 12-136 (242)
306 TIGR03689 pup_AAA proteasome A 93.5 0.48 1E-05 51.9 10.3 17 262-278 216-232 (512)
307 TIGR03881 KaiC_arch_4 KaiC dom 93.5 0.87 1.9E-05 44.6 11.5 51 261-320 19-69 (229)
308 TIGR03877 thermo_KaiC_1 KaiC d 93.5 0.39 8.5E-06 47.4 9.0 52 261-321 20-71 (237)
309 KOG0739 AAA+-type ATPase [Post 93.5 1.1 2.4E-05 44.7 11.7 149 222-427 127-292 (439)
310 PF13177 DNA_pol3_delta2: DNA 93.4 0.57 1.2E-05 43.3 9.3 41 371-412 101-141 (162)
311 CHL00181 cbbX CbbX; Provisiona 93.3 1 2.2E-05 45.8 11.9 18 262-279 59-76 (287)
312 PRK12724 flagellar biosynthesi 93.3 1.1 2.4E-05 47.7 12.3 127 262-424 223-356 (432)
313 PLN03025 replication factor C 93.3 0.93 2E-05 46.9 11.8 39 372-412 99-137 (319)
314 KOG0991 Replication factor C, 93.3 0.22 4.8E-06 47.7 6.3 41 371-412 112-152 (333)
315 PRK13894 conjugal transfer ATP 93.2 0.28 6E-06 50.6 7.7 66 237-310 124-190 (319)
316 TIGR03015 pepcterm_ATPase puta 93.1 1.8 3.9E-05 43.4 13.5 32 247-278 23-59 (269)
317 PRK14960 DNA polymerase III su 93.1 0.85 1.8E-05 51.1 11.6 42 371-414 117-158 (702)
318 KOG0298 DEAD box-containing he 93.1 0.11 2.3E-06 60.8 4.8 100 469-572 1220-1319(1394)
319 PRK14961 DNA polymerase III su 93.0 0.99 2.2E-05 47.7 11.7 14 265-278 41-54 (363)
320 PRK12726 flagellar biosynthesi 93.0 1.2 2.7E-05 46.6 11.9 20 261-280 205-224 (407)
321 cd00561 CobA_CobO_BtuR ATP:cor 92.9 1.3 2.7E-05 40.7 10.7 53 370-422 93-147 (159)
322 COG4962 CpaF Flp pilus assembl 92.9 0.19 4.1E-06 51.3 5.8 60 244-312 154-214 (355)
323 PRK13341 recombination factor 92.9 0.76 1.7E-05 52.8 11.2 40 372-416 109-148 (725)
324 PRK07003 DNA polymerase III su 92.8 0.95 2E-05 51.5 11.5 35 502-536 242-278 (830)
325 PRK14956 DNA polymerase III su 92.8 0.59 1.3E-05 50.5 9.7 15 265-279 43-57 (484)
326 TIGR02880 cbbX_cfxQ probable R 92.8 1 2.3E-05 45.7 11.1 18 262-279 58-75 (284)
327 TIGR03878 thermo_KaiC_2 KaiC d 92.8 0.87 1.9E-05 45.6 10.4 37 261-305 35-71 (259)
328 PRK12323 DNA polymerase III su 92.8 1.1 2.4E-05 50.2 11.8 40 370-410 122-161 (700)
329 PRK14949 DNA polymerase III su 92.8 1.1 2.3E-05 52.1 12.0 44 371-416 118-161 (944)
330 PRK06904 replicative DNA helic 92.7 1.8 4E-05 47.3 13.5 116 261-386 220-348 (472)
331 PF03796 DnaB_C: DnaB-like hel 92.7 0.95 2.1E-05 45.3 10.7 138 262-412 19-179 (259)
332 PRK07994 DNA polymerase III su 92.6 1.1 2.4E-05 50.6 11.8 17 371-387 118-134 (647)
333 PRK09112 DNA polymerase III su 92.6 0.86 1.9E-05 47.8 10.4 31 259-290 39-72 (351)
334 PRK09111 DNA polymerase III su 92.6 1.1 2.4E-05 50.4 11.8 40 370-410 130-169 (598)
335 PHA03368 DNA packaging termina 92.5 0.92 2E-05 50.5 10.7 136 259-414 251-391 (738)
336 PF10593 Z1: Z1 domain; Inter 92.5 0.63 1.4E-05 45.9 8.7 102 494-605 110-216 (239)
337 PRK04195 replication factor C 92.5 0.62 1.3E-05 51.3 9.6 17 262-278 39-55 (482)
338 PRK14962 DNA polymerase III su 92.4 1.6 3.5E-05 47.7 12.6 14 265-278 39-52 (472)
339 TIGR00959 ffh signal recogniti 92.4 1.7 3.7E-05 46.7 12.6 17 264-280 101-117 (428)
340 PRK10867 signal recognition pa 92.4 1.9 4.1E-05 46.4 12.9 17 264-280 102-118 (433)
341 COG3973 Superfamily I DNA and 92.4 0.75 1.6E-05 50.2 9.6 90 230-321 187-283 (747)
342 PRK06645 DNA polymerase III su 92.4 1.8 3.9E-05 47.6 13.0 16 264-279 45-60 (507)
343 PRK14873 primosome assembly pr 92.4 0.3 6.5E-06 55.4 7.2 92 454-546 171-265 (665)
344 PRK11823 DNA repair protein Ra 92.4 1 2.2E-05 48.9 10.9 51 262-321 80-130 (446)
345 PF03969 AFG1_ATPase: AFG1-lik 92.4 2.5 5.4E-05 44.5 13.4 109 262-416 62-171 (362)
346 TIGR03600 phage_DnaB phage rep 92.2 1.2 2.5E-05 48.2 11.2 115 261-385 193-318 (421)
347 PRK05973 replicative DNA helic 92.0 0.77 1.7E-05 45.1 8.6 66 246-321 49-114 (237)
348 PRK14963 DNA polymerase III su 92.0 0.74 1.6E-05 50.7 9.4 27 370-400 114-140 (504)
349 PRK08506 replicative DNA helic 92.0 0.94 2E-05 49.6 10.2 114 261-385 191-315 (472)
350 PF01695 IstB_IS21: IstB-like 91.9 0.45 9.8E-06 44.7 6.6 49 257-314 42-90 (178)
351 TIGR00708 cobA cob(I)alamin ad 91.8 2.2 4.7E-05 39.7 10.8 53 370-422 95-149 (173)
352 PRK06871 DNA polymerase III su 91.7 1.2 2.6E-05 46.0 9.9 40 249-289 4-50 (325)
353 TIGR02782 TrbB_P P-type conjug 91.6 0.72 1.6E-05 47.2 8.3 66 238-311 109-175 (299)
354 TIGR02928 orc1/cdc6 family rep 91.6 1.2 2.7E-05 46.9 10.5 24 263-287 41-64 (365)
355 PRK05986 cob(I)alamin adenolsy 91.6 2.4 5.2E-05 40.0 11.0 147 260-423 20-168 (191)
356 KOG0741 AAA+-type ATPase [Post 91.6 1.4 3E-05 47.5 10.2 58 370-432 322-393 (744)
357 PRK05563 DNA polymerase III su 91.5 1.7 3.8E-05 48.5 11.9 17 264-280 40-56 (559)
358 cd01121 Sms Sms (bacterial rad 91.5 1.3 2.8E-05 46.8 10.2 51 262-321 82-132 (372)
359 PRK07940 DNA polymerase III su 91.5 1 2.2E-05 47.9 9.5 45 371-417 116-160 (394)
360 COG1198 PriA Primosomal protei 91.4 0.27 5.9E-06 55.8 5.4 92 452-544 226-319 (730)
361 PRK04328 hypothetical protein; 91.4 1.6 3.5E-05 43.4 10.4 52 261-321 22-73 (249)
362 PF05496 RuvB_N: Holliday junc 91.4 0.52 1.1E-05 45.5 6.4 16 263-278 51-66 (233)
363 KOG0733 Nuclear AAA ATPase (VC 91.3 0.92 2E-05 49.6 8.8 53 223-278 506-561 (802)
364 PRK10689 transcription-repair 91.3 0.59 1.3E-05 56.5 8.3 98 447-544 625-728 (1147)
365 PRK06964 DNA polymerase III su 91.2 1.5 3.2E-05 45.8 10.1 41 248-289 2-47 (342)
366 PRK08840 replicative DNA helic 91.2 2.8 6.1E-05 45.7 12.8 115 261-385 216-342 (464)
367 KOG0738 AAA+-type ATPase [Post 91.2 1.7 3.6E-05 45.1 10.1 22 257-278 235-261 (491)
368 KOG2543 Origin recognition com 91.2 4.2 9.2E-05 42.2 12.9 142 248-416 10-161 (438)
369 PRK08691 DNA polymerase III su 91.2 2.4 5.2E-05 48.0 12.3 40 370-410 117-156 (709)
370 PRK14959 DNA polymerase III su 91.1 1.9 4.1E-05 48.4 11.4 17 264-280 40-56 (624)
371 PRK14969 DNA polymerase III su 91.0 1.2 2.6E-05 49.4 10.0 40 370-410 117-156 (527)
372 PRK14958 DNA polymerase III su 91.0 1.6 3.5E-05 48.2 10.7 39 371-410 118-156 (509)
373 PRK14952 DNA polymerase III su 91.0 1.8 4E-05 48.4 11.2 43 370-414 116-158 (584)
374 PRK08699 DNA polymerase III su 90.9 1.4 3E-05 45.7 9.6 33 248-280 2-39 (325)
375 PF02572 CobA_CobO_BtuR: ATP:c 90.9 7.3 0.00016 36.2 13.3 53 370-422 94-148 (172)
376 PF03237 Terminase_6: Terminas 90.8 2.3 4.9E-05 44.6 11.6 145 266-428 1-154 (384)
377 PRK09087 hypothetical protein; 90.7 0.68 1.5E-05 45.3 6.8 40 375-416 90-130 (226)
378 KOG2028 ATPase related to the 90.7 1.4 3E-05 45.2 8.9 16 263-278 163-178 (554)
379 PF06733 DEAD_2: DEAD_2; Inte 90.7 0.21 4.5E-06 46.8 3.0 46 342-387 113-160 (174)
380 cd03115 SRP The signal recogni 90.6 4.3 9.3E-05 37.6 12.0 54 371-424 81-135 (173)
381 PRK14965 DNA polymerase III su 90.6 1.7 3.7E-05 48.8 10.7 43 370-414 117-159 (576)
382 PRK08006 replicative DNA helic 90.5 3.9 8.5E-05 44.7 13.1 115 261-385 223-349 (471)
383 PRK11034 clpA ATP-dependent Cl 90.5 2.7 5.9E-05 48.7 12.4 17 262-278 207-223 (758)
384 COG1200 RecG RecG-like helicas 90.5 0.91 2E-05 50.4 8.1 87 458-544 299-390 (677)
385 TIGR02524 dot_icm_DotB Dot/Icm 90.4 0.45 9.7E-06 50.0 5.6 49 221-288 111-159 (358)
386 KOG0741 AAA+-type ATPase [Post 90.4 6.2 0.00013 42.7 13.6 137 230-416 494-652 (744)
387 PRK07993 DNA polymerase III su 90.3 2.9 6.2E-05 43.5 11.3 41 248-289 3-50 (334)
388 PRK10416 signal recognition pa 90.2 4.6 9.9E-05 41.7 12.7 54 371-424 195-255 (318)
389 PRK14957 DNA polymerase III su 90.1 2.8 6.1E-05 46.5 11.7 40 370-410 117-156 (546)
390 TIGR02012 tigrfam_recA protein 90.1 1.3 2.8E-05 45.6 8.5 43 261-311 54-96 (321)
391 PHA00729 NTP-binding motif con 90.1 2.9 6.2E-05 40.7 10.4 75 350-424 60-139 (226)
392 TIGR02525 plasmid_TraJ plasmid 90.1 0.54 1.2E-05 49.5 5.8 50 221-289 126-175 (372)
393 COG2909 MalT ATP-dependent tra 90.0 1.1 2.4E-05 51.0 8.4 42 373-414 130-171 (894)
394 PRK13764 ATPase; Provisional 89.9 0.73 1.6E-05 51.4 7.0 26 261-287 256-281 (602)
395 PRK06067 flagellar accessory p 89.9 4.6 9.9E-05 39.6 12.1 51 262-321 25-75 (234)
396 TIGR00635 ruvB Holliday juncti 89.9 0.61 1.3E-05 47.9 6.1 16 263-278 31-46 (305)
397 PF02534 T4SS-DNA_transf: Type 89.8 0.32 6.9E-06 53.4 4.1 49 263-321 45-93 (469)
398 PRK14954 DNA polymerase III su 89.8 2.2 4.8E-05 48.1 10.7 17 264-280 40-56 (620)
399 PRK07004 replicative DNA helic 89.8 1.8 3.9E-05 47.2 9.8 115 261-385 212-337 (460)
400 COG0552 FtsY Signal recognitio 89.7 5.6 0.00012 40.7 12.4 131 264-424 141-280 (340)
401 PRK09165 replicative DNA helic 89.7 2.3 4.9E-05 47.0 10.5 119 262-385 217-354 (497)
402 TIGR02639 ClpA ATP-dependent C 89.6 4.9 0.00011 46.7 13.8 16 263-278 204-219 (731)
403 TIGR01243 CDC48 AAA family ATP 89.6 2.5 5.4E-05 49.2 11.3 25 261-287 211-235 (733)
404 COG1485 Predicted ATPase [Gene 89.5 6.8 0.00015 40.4 12.8 108 263-417 66-175 (367)
405 TIGR00665 DnaB replicative DNA 89.5 3.4 7.4E-05 44.8 11.7 114 261-385 194-318 (434)
406 COG3972 Superfamily I DNA and 89.4 1.1 2.4E-05 47.7 7.3 141 236-384 152-307 (660)
407 PRK07471 DNA polymerase III su 89.4 3.1 6.6E-05 43.9 10.9 26 264-290 43-68 (365)
408 PRK14955 DNA polymerase III su 89.4 2.2 4.7E-05 45.7 9.9 17 370-386 125-141 (397)
409 PRK05748 replicative DNA helic 89.3 2.3 5E-05 46.3 10.3 115 261-385 202-327 (448)
410 PRK13900 type IV secretion sys 89.3 1.1 2.5E-05 46.5 7.5 44 259-311 157-200 (332)
411 PRK06090 DNA polymerase III su 89.3 1.8 3.9E-05 44.6 8.8 41 247-288 3-50 (319)
412 PTZ00454 26S protease regulato 89.3 1.8 3.9E-05 46.1 9.1 54 222-278 139-195 (398)
413 cd01126 TraG_VirD4 The TraG/Tr 89.2 0.26 5.6E-06 52.6 2.8 56 264-333 1-56 (384)
414 PRK04841 transcriptional regul 89.2 3 6.5E-05 49.8 12.1 44 371-414 120-163 (903)
415 PRK05896 DNA polymerase III su 89.2 2.1 4.5E-05 47.8 9.7 17 263-279 39-55 (605)
416 TIGR01243 CDC48 AAA family ATP 89.2 1.4 3.1E-05 51.2 9.0 45 372-416 546-601 (733)
417 COG2109 BtuR ATP:corrinoid ade 89.1 3.5 7.6E-05 38.5 9.5 53 371-423 121-175 (198)
418 PRK00440 rfc replication facto 89.1 5 0.00011 41.3 12.2 38 372-410 102-139 (319)
419 PRK08760 replicative DNA helic 88.9 2.5 5.5E-05 46.3 10.1 114 261-385 228-352 (476)
420 KOG1513 Nuclear helicase MOP-3 88.8 0.27 5.9E-06 54.7 2.5 156 246-413 263-454 (1300)
421 PF05729 NACHT: NACHT domain 88.8 2.9 6.3E-05 38.0 9.2 25 264-289 2-26 (166)
422 COG2804 PulE Type II secretory 88.7 0.77 1.7E-05 49.4 5.7 41 248-289 242-284 (500)
423 PRK13851 type IV secretion sys 88.7 0.74 1.6E-05 48.0 5.6 45 258-311 158-202 (344)
424 cd01130 VirB11-like_ATPase Typ 88.5 1.4 3E-05 41.7 6.9 32 247-278 9-41 (186)
425 PRK13897 type IV secretion sys 88.5 0.46 1E-05 53.3 4.1 57 263-333 159-215 (606)
426 COG1197 Mfd Transcription-repa 88.4 1.6 3.4E-05 51.6 8.4 77 468-544 641-722 (1139)
427 COG1110 Reverse gyrase [DNA re 88.4 0.97 2.1E-05 52.3 6.5 62 469-530 124-191 (1187)
428 TIGR01420 pilT_fam pilus retra 88.3 1.5 3.2E-05 46.0 7.5 43 261-310 121-163 (343)
429 PRK14951 DNA polymerase III su 88.2 2.5 5.3E-05 47.6 9.6 17 371-387 123-139 (618)
430 PF01637 Arch_ATPase: Archaeal 88.2 0.78 1.7E-05 44.5 5.2 40 374-413 120-165 (234)
431 TIGR02237 recomb_radB DNA repa 88.2 3.7 8.1E-05 39.4 9.9 39 261-307 11-49 (209)
432 TIGR00614 recQ_fam ATP-depende 88.1 1.8 3.8E-05 47.6 8.4 75 470-544 51-133 (470)
433 cd03239 ABC_SMC_head The struc 88.0 0.55 1.2E-05 44.1 3.8 42 371-412 115-157 (178)
434 TIGR00763 lon ATP-dependent pr 88.0 6.6 0.00014 46.0 13.4 18 261-278 346-363 (775)
435 COG1219 ClpX ATP-dependent pro 88.0 0.48 1E-05 47.7 3.4 28 260-289 95-122 (408)
436 COG2255 RuvB Holliday junction 87.9 2.3 5E-05 42.4 7.9 40 356-400 91-130 (332)
437 PHA00012 I assembly protein 87.9 3.5 7.5E-05 42.1 9.4 56 371-426 80-140 (361)
438 PRK09354 recA recombinase A; P 87.8 2.8 6E-05 43.6 9.1 42 262-311 60-101 (349)
439 PRK14950 DNA polymerase III su 87.7 3.2 6.9E-05 46.9 10.3 17 370-386 118-134 (585)
440 CHL00176 ftsH cell division pr 87.7 3.2 6.9E-05 47.1 10.2 16 263-278 217-232 (638)
441 cd01128 rho_factor Transcripti 87.6 2.8 6E-05 41.6 8.7 20 259-278 13-32 (249)
442 TIGR03880 KaiC_arch_3 KaiC dom 87.6 4.4 9.6E-05 39.4 10.1 51 262-321 16-66 (224)
443 KOG0740 AAA+-type ATPase [Post 87.6 3.4 7.3E-05 43.9 9.6 53 371-423 244-309 (428)
444 KOG0742 AAA+-type ATPase [Post 87.5 1.2 2.6E-05 46.4 5.9 16 263-278 385-400 (630)
445 COG0513 SrmB Superfamily II DN 87.5 1.9 4.1E-05 47.8 8.2 68 473-544 102-180 (513)
446 TIGR00678 holB DNA polymerase 87.4 2.1 4.5E-05 40.5 7.4 25 264-289 16-40 (188)
447 COG0210 UvrD Superfamily I DNA 87.4 1.4 2.9E-05 50.7 7.3 71 247-323 2-72 (655)
448 PRK08451 DNA polymerase III su 87.3 0.9 1.9E-05 50.1 5.4 40 370-410 115-154 (535)
449 TIGR02655 circ_KaiC circadian 87.3 4.2 9.1E-05 44.8 10.7 59 254-321 250-313 (484)
450 cd01129 PulE-GspE PulE/GspE Th 87.2 1.6 3.4E-05 43.9 6.8 38 249-287 65-104 (264)
451 PRK14948 DNA polymerase III su 87.2 4.5 9.8E-05 45.8 11.0 17 263-279 39-55 (620)
452 COG1132 MdlB ABC-type multidru 87.1 1.3 2.7E-05 50.0 6.7 43 370-412 481-523 (567)
453 PF12846 AAA_10: AAA-like doma 87.1 1.8 3.9E-05 44.0 7.4 41 263-311 2-42 (304)
454 KOG0058 Peptide exporter, ABC 87.1 1.6 3.5E-05 48.8 7.2 41 370-411 620-660 (716)
455 PRK05595 replicative DNA helic 87.0 2 4.3E-05 46.8 7.9 113 262-385 201-324 (444)
456 KOG0701 dsRNA-specific nucleas 86.8 0.53 1.1E-05 57.5 3.5 93 473-565 295-399 (1606)
457 TIGR03346 chaperone_ClpB ATP-d 86.8 8.4 0.00018 45.6 13.5 17 263-279 195-211 (852)
458 PRK06321 replicative DNA helic 86.7 8 0.00017 42.3 12.3 113 262-385 226-349 (472)
459 PRK05636 replicative DNA helic 86.6 4.7 0.0001 44.5 10.5 110 262-385 265-388 (505)
460 PRK10865 protein disaggregatio 86.5 7.5 0.00016 46.0 12.8 16 263-278 200-215 (857)
461 PRK07399 DNA polymerase III su 86.4 3.1 6.7E-05 42.9 8.5 44 263-307 27-78 (314)
462 PF05707 Zot: Zonular occluden 86.4 2.3 5E-05 40.4 7.1 52 372-423 79-135 (193)
463 COG5008 PilU Tfp pilus assembl 86.1 0.63 1.4E-05 45.6 3.0 44 223-286 106-150 (375)
464 cd00268 DEADc DEAD-box helicas 86.1 16 0.00035 34.6 13.0 71 470-544 69-149 (203)
465 TIGR02868 CydC thiol reductant 86.1 1 2.2E-05 50.2 5.3 41 370-410 486-526 (529)
466 PRK03992 proteasome-activating 86.1 4 8.7E-05 43.5 9.5 16 263-278 166-181 (389)
467 PHA03372 DNA packaging termina 86.0 8.1 0.00017 42.8 11.6 130 260-413 200-337 (668)
468 PRK07414 cob(I)yrinic acid a,c 86.0 15 0.00033 34.2 11.9 52 371-422 114-167 (178)
469 KOG1132 Helicase of the DEAD s 85.9 14 0.00029 42.6 13.5 12 404-415 481-492 (945)
470 CHL00095 clpC Clp protease ATP 85.7 5.2 0.00011 47.2 11.0 17 263-279 201-217 (821)
471 TIGR01241 FtsH_fam ATP-depende 85.7 5.6 0.00012 43.9 10.8 22 263-286 89-110 (495)
472 PRK10436 hypothetical protein; 85.6 1.9 4.2E-05 46.8 6.8 36 251-287 205-242 (462)
473 TIGR02858 spore_III_AA stage I 85.4 5.4 0.00012 40.1 9.5 30 256-287 102-134 (270)
474 TIGR02533 type_II_gspE general 85.4 1.5 3.3E-05 48.1 6.0 38 249-287 227-266 (486)
475 PRK14701 reverse gyrase; Provi 85.1 3.2 6.8E-05 52.1 9.1 59 470-528 122-186 (1638)
476 PRK06620 hypothetical protein; 85.0 5 0.00011 38.9 8.7 106 301-416 17-126 (214)
477 PRK13850 type IV secretion sys 84.7 0.99 2.2E-05 51.3 4.3 43 263-315 140-182 (670)
478 PRK07133 DNA polymerase III su 84.5 9.2 0.0002 43.8 11.7 17 370-386 116-132 (725)
479 KOG0339 ATP-dependent RNA heli 84.3 6.9 0.00015 42.0 9.7 71 470-544 295-376 (731)
480 KOG1832 HIV-1 Vpr-binding prot 84.2 0.9 1.9E-05 51.3 3.4 11 29-39 1393-1403(1516)
481 TIGR00416 sms DNA repair prote 84.1 5.8 0.00013 43.2 9.7 51 262-321 94-144 (454)
482 PF04665 Pox_A32: Poxvirus A32 83.8 1.5 3.3E-05 43.0 4.6 35 264-306 15-49 (241)
483 PRK00080 ruvB Holliday junctio 83.8 2.6 5.7E-05 43.8 6.7 16 263-278 52-67 (328)
484 COG1122 CbiO ABC-type cobalt t 83.7 2.8 6E-05 41.2 6.4 33 372-404 156-188 (235)
485 PHA00350 putative assembly pro 83.6 11 0.00023 40.1 11.0 17 265-281 4-20 (399)
486 PRK06305 DNA polymerase III su 83.5 13 0.00027 40.6 12.0 16 264-279 41-56 (451)
487 KOG1806 DEAD box containing he 83.4 1.7 3.8E-05 50.1 5.3 73 243-321 734-806 (1320)
488 cd01131 PilT Pilus retraction 83.2 1.8 3.8E-05 41.4 4.8 22 265-287 4-25 (198)
489 PF00437 T2SE: Type II/IV secr 83.2 1.1 2.4E-05 45.1 3.5 44 260-311 125-168 (270)
490 PRK14971 DNA polymerase III su 83.2 7.9 0.00017 43.9 10.5 42 370-413 119-160 (614)
491 TIGR03345 VI_ClpV1 type VI sec 83.1 8.5 0.00018 45.5 11.2 16 263-278 209-224 (852)
492 KOG0347 RNA helicase [RNA proc 83.1 2.2 4.9E-05 46.0 5.7 68 473-544 266-346 (731)
493 TIGR03819 heli_sec_ATPase heli 83.0 3.2 7E-05 43.3 6.9 64 237-311 154-218 (340)
494 TIGR02640 gas_vesic_GvpN gas v 82.8 1.6 3.5E-05 43.8 4.5 27 253-279 12-38 (262)
495 cd03221 ABCF_EF-3 ABCF_EF-3 E 82.8 9.4 0.0002 34.3 9.1 40 370-412 86-125 (144)
496 TIGR00767 rho transcription te 82.7 2 4.4E-05 45.3 5.2 19 260-278 166-184 (415)
497 PRK14953 DNA polymerase III su 82.7 8.7 0.00019 42.2 10.4 17 370-386 117-133 (486)
498 TIGR01389 recQ ATP-dependent D 82.6 5.5 0.00012 45.1 9.2 94 448-544 33-133 (591)
499 KOG1969 DNA replication checkp 82.6 6.2 0.00013 44.4 9.0 15 263-277 327-341 (877)
500 PRK11634 ATP-dependent RNA hel 82.6 4 8.6E-05 46.4 8.0 71 470-544 74-155 (629)
No 1
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.6e-108 Score=821.29 Aligned_cols=594 Identities=61% Similarity=0.940 Sum_probs=535.3
Q ss_pred CCCCCcccccccccccccccccccCCCcccccCCCCCCCCCCCC---CCCccCcccccchhhhccCCCCCCCCCccCChH
Q 006824 1 MTKRKFGFEGFNINRQTSYSFEQSQAPQRLYVPPSSRYSHDNYE---DTDLDNIDYEDNDAAKAANDTGNGAEKEEIDPL 77 (630)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 77 (630)
|+.|+|||+||+.+|+++|+++++++|++.|+|.+....-.+.. ..-.++++.+||+.+.+.......++.||+||+
T Consensus 1 l~~r~~g~~g~~rn~~ts~~~e~s~~~~~~y~~~s~yg~~~~~~~~rk~i~ddey~eddd~p~~~s~~~a~~~~de~d~l 80 (731)
T KOG0339|consen 1 LSNRKFGMEGFGRNRQTSYSFERSQAPQRLYVPPSSYGGDNSEDADRKNIDDDEYEEDDDIPEGGSAAAAGGEVDEIDPL 80 (731)
T ss_pred CCccCCCCCCCCcCcccccchhhhcCccceecChhhcCCCchhhhhhhcccccccccccccccccchhhccCCCCCCCCc
Confidence 78999999999999999999999999999999866554431111 112222223333444343444556778899999
Q ss_pred HHHHHhhHHHhhcCCCCCCccccccccCC------------CCCChhhHHHHhhhhhcchhhhhhhhcCCCChHHHHHHH
Q 006824 78 DAFMEGIHEEMRAAPPPKPKEKLERYKDD------------DEEDPMESFLMAKKDVGLTLAADALRAGYDSDEEVYAAA 145 (630)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~ 145 (630)
+|||+.+++++++.+++..++++++.+++ ++++..+.+++++.+ .......
T Consensus 81 dafMA~~~d~~~sd~~~~e~kk~eRkn~dd~~p~~~vr~dI~~e~aae~~~kym~e-----------------~k~~~~~ 143 (731)
T KOG0339|consen 81 DAFMAKIEDQAQSDKKPLEQKKKERKNDDDDDPTATVRADIDEEDAAEALFKYMSE-----------------NKRAGAA 143 (731)
T ss_pred chhhhhhhhhhhccCCccchHHHhhhccCCCccchhhhcchhhHHhHHHHHHHhhh-----------------cccchhh
Confidence 99999999999887765544443333322 222333333333322 1111223
Q ss_pred hhhhcCCCCCCCCCChhhhhhccCCCCCCCCCCCcccCCCcccCccCCccccCCCHHHHHHHHHHcCceeccCCCCCCCC
Q 006824 146 KAVDAGMLDYDSDDNPVVVEKKKIEPIPALDHSLIDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVK 225 (630)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~ 225 (630)
.+.++...+||+++|+....|+.++|+++++|+.|.|.||+++||.+|+.|+.++..+...++..+++++.|..+|+|++
T Consensus 144 ~e~~~~~leydsd~nPi~~~kr~idpl~~idhs~i~y~p~~kdfy~e~esI~gl~~~d~~~~r~~Lnlrv~g~s~~rpvt 223 (731)
T KOG0339|consen 144 KECDDMCLEYDSDGNPIAPDKRQIDPLPPIDHSEIDYEPFNKDFYEEHESIEGLTKMDVIDLRLTLNLRVSGSSPPRPVT 223 (731)
T ss_pred hhcccceeecCCCCCccCcccccCCCCCCcchhhccccccccccccChhhhhccccccchhhHhhhcceeccCCCCCCcc
Confidence 34455668999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEc
Q 006824 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICA 305 (630)
Q Consensus 226 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~ 305 (630)
+|++++|.+.|+.++.+..|.+|||+|++++|..++|+|++.+|.||||||.+|++|++.|+++++++..+++|..||||
T Consensus 224 sfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilv 303 (731)
T KOG0339|consen 224 SFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILV 303 (731)
T ss_pred hhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhh
Q 006824 306 PTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (630)
Q Consensus 306 Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~ 385 (630)
|||+||.|++.++++|++.++++++++|||.+.++|+..|..|+.||||||++|++++..+..++.+++|||||||++|+
T Consensus 304 PTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmf 383 (731)
T KOG0339|consen 304 PTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMF 383 (731)
T ss_pred ccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHhhcCCCCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCccccHHHHHHhcc
Q 006824 386 DLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLP 465 (630)
Q Consensus 386 ~~~~~~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~ 465 (630)
++||.++|++|..++++++|+|+||||++..++.+++.+|.+|+++..+..+.++..|.|.+.++++...|+.||+..|.
T Consensus 384 dmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~L~ 463 (731)
T KOG0339|consen 384 DMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRHLV 463 (731)
T ss_pred ccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEEEEe
Q 006824 466 GMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNF 545 (630)
Q Consensus 466 ~~~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI~~ 545 (630)
.+...|++|||+..+..++.++..|+..++++..+||+++|.+|.+++..|+.+...|||+|++++||+||+.+++||||
T Consensus 464 ~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvny 543 (731)
T KOG0339|consen 464 EFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNY 543 (731)
T ss_pred hhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHhhhcccCCCCCeEEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHHHHHhhcccc
Q 006824 546 DIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLAMKVGRRE 612 (630)
Q Consensus 546 ~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~~~~~l~~~l~~~~~~vp~~L~~la~~~~~~~ 612 (630)
|+..+++.|.|||||+||+|. .|++|++++..|..++..||+.|+.++|.||++|++||++.++.+
T Consensus 544 D~ardIdththrigrtgRag~-kGvayTlvTeKDa~fAG~LVnnLe~agQnVP~~l~dlamk~s~fr 609 (731)
T KOG0339|consen 544 DFARDIDTHTHRIGRTGRAGE-KGVAYTLVTEKDAEFAGHLVNNLEGAGQNVPDELMDLAMKSSWFR 609 (731)
T ss_pred cccchhHHHHHHhhhcccccc-cceeeEEechhhHHHhhHHHHHHhhccccCChHHHHHHhhhhhhh
Confidence 999999999999999999995 599999999999999999999999999999999999999976544
No 2
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.9e-80 Score=644.03 Aligned_cols=428 Identities=50% Similarity=0.818 Sum_probs=398.1
Q ss_pred cccCCCcccCccCCccccCCCHHHHHHHHHHcCceeccCC-CCCCCCCccc-----------------------------
Q 006824 180 IDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFD-VPRPVKTFED----------------------------- 229 (630)
Q Consensus 180 ~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~p~~~~~~----------------------------- 229 (630)
..+.+|.+.||.+++........+...++.+..+.+++.. +|.|+.+|+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~v~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 95 (519)
T KOG0331|consen 16 LDLSPFDKNFYKEHPSVKKRGSAEVERKRKKNEITVKGGDSVPKPVKSFEESGFPAKVLEEIPKLSRSSGESDSSAAFQE 95 (519)
T ss_pred cccCcccccccccccccccccccccccccCcceeeccCCCCCCCCccchhcccCCccccccccccccccccCCcchhhhc
Confidence 4577999999999988888888888888888888888766 7777666554
Q ss_pred CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhc-CCcccccCCCeEEEEcccH
Q 006824 230 CGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMD-QPELQKEEGPIGVICAPTR 308 (630)
Q Consensus 230 ~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~-~~~~~~~~~~~vLil~Ptr 308 (630)
++++..+...++..||..|||||.++||+++.|+|++.+|.||||||++|++|++.|+.. ++....+++|++|||+|||
T Consensus 96 ~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTR 175 (519)
T KOG0331|consen 96 LGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTR 175 (519)
T ss_pred ccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcH
Confidence 455666677778999999999999999999999999999999999999999999999998 7778888999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCC
Q 006824 309 ELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG 388 (630)
Q Consensus 309 ~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~ 388 (630)
|||.|+...+.+++..+++++.|+|||.....|.+.+..|++|+||||++|.++++.+...|+++.|+|+||||+|++++
T Consensus 176 ELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmG 255 (519)
T KOG0331|consen 176 ELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMG 255 (519)
T ss_pred HHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhhc-CCCCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccc--cccccceEEEEEcCCccccHHHHHHhcc
Q 006824 389 FEPQIRSIVGQI-RPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVG--MANEDITQVVHVIPSDAEKLPWLLEKLP 465 (630)
Q Consensus 389 ~~~~v~~i~~~l-~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~--~~~~~i~q~~~~~~~~~~k~~~l~~~l~ 465 (630)
|.++++.|++.+ ++.+|++++|||||..++.++..|+.+|+.+.++... .++.++.|.+..++ ...|...|..+|.
T Consensus 256 Fe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~-~~~K~~~l~~lL~ 334 (519)
T KOG0331|consen 256 FEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCD-ETAKLRKLGKLLE 334 (519)
T ss_pred cHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcC-HHHHHHHHHHHHH
Confidence 999999999999 7788999999999999999999999999999998653 67889999999987 6778888888777
Q ss_pred CCC--CCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEEE
Q 006824 466 GMI--DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVV 543 (630)
Q Consensus 466 ~~~--~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI 543 (630)
... ..+++||||+++..|+.|...|...++++.+|||+.+|.+|..+++.|++|+..|||||++++||||||+|++||
T Consensus 335 ~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVI 414 (519)
T KOG0331|consen 335 DISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVI 414 (519)
T ss_pred HHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEE
Confidence 664 567999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCHHHHHHHhhhcccCCCCCeEEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHHHHHhhc
Q 006824 544 NFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLAMKVG 609 (630)
Q Consensus 544 ~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~~~~~l~~~l~~~~~~vp~~L~~la~~~~ 609 (630)
|||+|.+.+.|+||+|||||+| +.|.+++|++..+...+..+++.|..++|.+|+.|..++....
T Consensus 415 nydfP~~vEdYVHRiGRTGRa~-~~G~A~tfft~~~~~~a~~l~~~l~e~~q~v~~~l~~~~~~~~ 479 (519)
T KOG0331|consen 415 NYDFPNNVEDYVHRIGRTGRAG-KKGTAITFFTSDNAKLARELIKVLREAGQTVPPDLLEYARVSG 479 (519)
T ss_pred eCCCCCCHHHHHhhcCccccCC-CCceEEEEEeHHHHHHHHHHHHHHHHccCCCChHHHHHHhhcc
Confidence 9999999999999999999999 6799999999999999999999999999999999999987754
No 3
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.5e-79 Score=595.93 Aligned_cols=430 Identities=42% Similarity=0.706 Sum_probs=401.9
Q ss_pred CcccCCCcccCccCCccccCCCHHHHHHHHHHc-Cceecc------CCCCCCCCCccc-CCCCHHHHHHHHHcCCCCCcH
Q 006824 179 LIDYEPFNKDFYQDSASISGMSEQDVMEYKKSL-AIRVSG------FDVPRPVKTFED-CGFSTQLMHAISKQGYEKPTS 250 (630)
Q Consensus 179 ~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~p~p~~~~~~-~~l~~~l~~~l~~~~~~~~~~ 250 (630)
....+|..++||.++.+.++|+..++..|++.. .|++.. ..+|+|..+|++ |...+.+++.|.+.||.+|||
T Consensus 166 W~~lpPi~knfYke~~e~s~ls~~q~~~~r~en~~it~dd~K~gekrpIPnP~ctFddAFq~~pevmenIkK~GFqKPtP 245 (629)
T KOG0336|consen 166 WAKLPPIKKNFYKESNETSNLSKEQLQEWRKENFNITCDDLKEGEKRPIPNPVCTFDDAFQCYPEVMENIKKTGFQKPTP 245 (629)
T ss_pred cccCCchhhhhhhcCchhccCCHHHHHHHHHcCCcEEecccccCCcccCCCCcCcHHHHHhhhHHHHHHHHhccCCCCCc
Confidence 345679999999999999999999999999877 566542 457999999998 578999999999999999999
Q ss_pred HHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCc-ccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCceE
Q 006824 251 IQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPE-LQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRV 329 (630)
Q Consensus 251 ~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~-~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~ 329 (630)
+|.|+||++++|.|++++|.||+|||++|++|.+.|+..++. +...++|.+|+++|||+|+.|+.-++.++.. .|++.
T Consensus 246 IqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysy-ng~ks 324 (629)
T KOG0336|consen 246 IQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSY-NGLKS 324 (629)
T ss_pred chhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhh-cCcce
Confidence 999999999999999999999999999999999999998874 3456799999999999999999998888865 48999
Q ss_pred EEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCcHHHHHHHHhhcCCCCcEEEE
Q 006824 330 SAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLF 409 (630)
Q Consensus 330 ~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q~l~~ 409 (630)
+|+|||.++.+++..++.|.+||++||++|.++...+..++.++.|+|+||||+|++|+|+++++.|+-.++|++|+++.
T Consensus 325 vc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtvmT 404 (629)
T KOG0336|consen 325 VCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVMT 404 (629)
T ss_pred EEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccHHHHHHHHHHcCCCeEEEEccccc-ccccceEEEEEcCCccccHHHHHHhccCCCCCCCEEEEccchhhHHHHHH
Q 006824 410 SATMPRKVEKLAREILSDPVRVTVGEVGM-ANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIES 488 (630)
Q Consensus 410 SAT~~~~~~~l~~~~~~~~~~i~~~~~~~-~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~~~~~iLIF~~s~~~~~~l~~ 488 (630)
|||||+.+..|+..|+.+|+.+.++.... +...+.|.+ .+..+..|+..+..++.......++||||.++..++.|..
T Consensus 405 SATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i-~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSS 483 (629)
T KOG0336|consen 405 SATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNI-IVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSS 483 (629)
T ss_pred cccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeE-EecccHHHHHHHHHHHHhcCCCceEEEEEechhhhhhccc
Confidence 99999999999999999999999998765 466788887 6667778888888888888788899999999999999999
Q ss_pred HHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEEEEeCCCCCHHHHHHHhhhcccCCCCC
Q 006824 489 QLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKD 568 (630)
Q Consensus 489 ~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~QriGR~gR~g~~~ 568 (630)
-|.-.|+....|||+-+|.+|+.+++.|++|+++|||||++++||||++++.||+|||+|.|++.|+||+||+||+| ++
T Consensus 484 d~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaG-r~ 562 (629)
T KOG0336|consen 484 DFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAG-RT 562 (629)
T ss_pred hhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCC-CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999 78
Q ss_pred eEEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHHHHHhhccc
Q 006824 569 GTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLAMKVGRR 611 (630)
Q Consensus 569 g~~~~l~~~~d~~~~~~l~~~l~~~~~~vp~~L~~la~~~~~~ 611 (630)
|++++|++.+|...+..|+++|++++|+||++|..||.+....
T Consensus 563 G~sis~lt~~D~~~a~eLI~ILe~aeQevPdeL~~mAeryk~~ 605 (629)
T KOG0336|consen 563 GTSISFLTRNDWSMAEELIQILERAEQEVPDELVRMAERYKLK 605 (629)
T ss_pred cceEEEEehhhHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999887543
No 4
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=1.9e-77 Score=603.52 Aligned_cols=496 Identities=38% Similarity=0.603 Sum_probs=424.9
Q ss_pred cccCCCCCChhhHHHH-hhhhhcchhhhhhhhcCCCChHHHHHHHhhhhcCCCCCCCCCChhhhhhccCCCCCCCCCCCc
Q 006824 102 RYKDDDEEDPMESFLM-AKKDVGLTLAADALRAGYDSDEEVYAAAKAVDAGMLDYDSDDNPVVVEKKKIEPIPALDHSLI 180 (630)
Q Consensus 102 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (630)
.++|+..+|-...+.. +........|+++..+|.|..++..+.+...+-...-.-+++.+.....-.+. .......
T Consensus 128 ~fdWda~edT~~d~~~l~~~~~~i~~fgrG~~ag~d~~~qkk~~s~~~~~~e~r~t~~~ke~~~~~~qk~---~k~~~k~ 204 (673)
T KOG0333|consen 128 VFDWDASEDTSNDYNPLYSSRHDIQLFGRGFVAGIDVKEQKKEKSKYGEMMEKRRTEDEKEQEEELLQKV---CKKEAKS 204 (673)
T ss_pred EEeecccccccccchhhhcCcccchhhccccccccchHHHHhhhhhhhhHhhhhcchhhhhhHHHHHHHh---hhhhhhc
Confidence 4677776655544322 12224466799999999998888766554222110000000000000000000 0111112
Q ss_pred ccCCCcccCccCCccccCCCHHHHHHHHHHcCceeccCCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHH
Q 006824 181 DYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIIL 260 (630)
Q Consensus 181 ~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il 260 (630)
.|+ .+| |.+ ..+..|++.+|..|++.++|.++|..+|.|+.+|++.+||.++++.+.+.||..|+|+|.+++|..+
T Consensus 205 ~~D--drh-W~~-k~l~Em~~rdwri~redynis~kg~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~l 280 (673)
T KOG0333|consen 205 GWD--DRH-WSE-KVLAEMTERDWRIFREDYNISIKGGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGL 280 (673)
T ss_pred ccc--ccc-hhh-hhHHhcCCccceeeecceeeeecCCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchh
Confidence 232 233 322 2468899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccc----cCCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCC
Q 006824 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQK----EEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGM 336 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~----~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~ 336 (630)
+++|+|+.|.||||||++|++|++..+...|++.. ..||+++||+|||+|++||.++..+|++.+|++++.+.||.
T Consensus 281 Q~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~ 360 (673)
T KOG0333|consen 281 QNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGL 360 (673)
T ss_pred ccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEeccc
Confidence 99999999999999999999999999998885433 45999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCcHHHHHHHHhhcCC--------------
Q 006824 337 SKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRP-------------- 402 (630)
Q Consensus 337 ~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~-------------- 402 (630)
+..++...+..||+|+||||++|.+.|.+..+.++.+.+||+||||+|++|||.+.+..++.+++.
T Consensus 361 s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~ 440 (673)
T KOG0333|consen 361 SFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEE 440 (673)
T ss_pred chhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHH
Confidence 999999999999999999999999999999999999999999999999999999999999998852
Q ss_pred -----------CCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCccccHHHHHHhccCCCCCC
Q 006824 403 -----------DRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDG 471 (630)
Q Consensus 403 -----------~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~~~~ 471 (630)
.+|+++||||+|+.++.+++.|+.+|+.++++..+.....+.|.+..+.. +.|+..|+++|... ...
T Consensus 441 ~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~e-d~k~kkL~eil~~~-~~p 518 (673)
T KOG0333|consen 441 RVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSE-DEKRKKLIEILESN-FDP 518 (673)
T ss_pred HHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheEEEEecc-hHHHHHHHHHHHhC-CCC
Confidence 27999999999999999999999999999999999999999999998865 56799999999876 456
Q ss_pred CEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEEEEeCCCCCH
Q 006824 472 DVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDM 551 (630)
Q Consensus 472 ~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~~~ 551 (630)
++|||+|++..|+.|++.|.+.|+.++.+||+.+|++|..+++.|++|...|||||++++||||||+|++|||||++.++
T Consensus 519 piIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksi 598 (673)
T KOG0333|consen 519 PIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSI 598 (673)
T ss_pred CEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcccCCCCCeEEEEEeccccHHHHHHHHHHHH-HcCCCCCHHHHHHHHh
Q 006824 552 DMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLI-AAGQNVSMELMDLAMK 607 (630)
Q Consensus 552 ~~y~QriGR~gR~g~~~g~~~~l~~~~d~~~~~~l~~~l~-~~~~~vp~~L~~la~~ 607 (630)
.+|+|||||+||+| +.|+|++|+++.|....++|++.|. ......|++|......
T Consensus 599 eDYtHRIGRTgRAG-k~GtaiSflt~~dt~v~ydLkq~l~es~~s~~P~Ela~h~~a 654 (673)
T KOG0333|consen 599 EDYTHRIGRTGRAG-KSGTAISFLTPADTAVFYDLKQALRESVKSHCPPELANHPDA 654 (673)
T ss_pred HHHHHHhccccccc-cCceeEEEeccchhHHHHHHHHHHHHhhhccCChhhccChhh
Confidence 99999999999999 7899999999999999999999987 5678999999876544
No 5
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-77 Score=653.08 Aligned_cols=446 Identities=48% Similarity=0.791 Sum_probs=428.7
Q ss_pred hccCCCCCCCCCCCcccCCCcccCccCCccccCCCHHHHHHHHHHcC-ceeccCCCCCCCCCcccCCCCHHHHHHHHHcC
Q 006824 166 KKKIEPIPALDHSLIDYEPFNKDFYQDSASISGMSEQDVMEYKKSLA-IRVSGFDVPRPVKTFEDCGFSTQLMHAISKQG 244 (630)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~p~~~~~~~~l~~~l~~~l~~~~ 244 (630)
.+....+..++|+.+.|+||+++||.+.++++.|+..++..|+..+. +.++|..+|.|+++|.++|+...++..+++.|
T Consensus 305 ~~~~~~~~~~~~S~~~~epFRknfy~e~~di~~ms~~eV~~yr~~l~~i~v~g~~~pkpv~sW~q~gl~~~il~tlkkl~ 384 (997)
T KOG0334|consen 305 LKAKKNLIQVDHSKISYEPFRKNFYIEVRDIKRMSAAEVDEYRCELDGIKVKGKECPKPVTSWTQCGLSSKILETLKKLG 384 (997)
T ss_pred cccccceeecccccccchhhhhcccccchhHHHHHHHHHHHhhcCccceeeccCCCCcccchHhhCCchHHHHHHHHHhc
Confidence 34445788999999999999999999999999999999999999995 99999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhh
Q 006824 245 YEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS 324 (630)
Q Consensus 245 ~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~ 324 (630)
|.+|+|||.+|||+|++|+|+|++|.||||||++|+||++.|+..+|....+.||.+||++|||+||.||.+++.+|++.
T Consensus 385 y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~ 464 (997)
T KOG0334|consen 385 YEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKL 464 (997)
T ss_pred CCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHcc---ccccCceeEEEecchhhhhcCCcHHHHHHHHhhcC
Q 006824 325 HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK---ALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIR 401 (630)
Q Consensus 325 ~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~---~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~ 401 (630)
.+++++++|||.....++.+++.|+.|+||||+++++++..+ ..++.++.++|+||||+|++++|.+++..|+.+++
T Consensus 465 l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlr 544 (997)
T KOG0334|consen 465 LGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLR 544 (997)
T ss_pred cCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcc
Confidence 999999999999999999999999999999999999998764 34577788999999999999999999999999999
Q ss_pred CCCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCccccHHHHHHhccCCCCCCCEEEEccchh
Q 006824 402 PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKT 481 (630)
Q Consensus 402 ~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~~~~~iLIF~~s~~ 481 (630)
+.+|+++||||+|+.+..+++..++.|+.+.++.....+..+.|.+.++.....|+..|.++|......+++||||.+..
T Consensus 545 pdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe 624 (997)
T KOG0334|consen 545 PDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQE 624 (997)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCch
Confidence 99999999999999999999999999999999999999999999999999889999999999999888999999999999
Q ss_pred hHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEEEEeCCCCCHHHHHHHhhhc
Q 006824 482 TVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRT 561 (630)
Q Consensus 482 ~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~QriGR~ 561 (630)
.|+.+...|.+.|+.+..+||+.+|.+|..+++.|++|.+.+||||++++||+|++.+..||||++|.....|+||+||+
T Consensus 625 ~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRT 704 (997)
T KOG0334|consen 625 KADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRT 704 (997)
T ss_pred HHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCeEEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHHHHHhhcccc
Q 006824 562 GRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLAMKVGRRE 612 (630)
Q Consensus 562 gR~g~~~g~~~~l~~~~d~~~~~~l~~~l~~~~~~vp~~L~~la~~~~~~~ 612 (630)
||+| ..|.|++|+++.+..++.+|+++|+.+++.+|..|..|+.++..+.
T Consensus 705 grag-rkg~AvtFi~p~q~~~a~dl~~al~~~~~~~P~~l~~l~~~f~~~~ 754 (997)
T KOG0334|consen 705 GRAG-RKGAAVTFITPDQLKYAGDLCKALELSKQPVPKLLQALSERFKAKQ 754 (997)
T ss_pred ccCC-ccceeEEEeChHHhhhHHHHHHHHHhccCCCchHHHHHHHHHHhhh
Confidence 9999 5799999999999999999999999999999999999998876444
No 6
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=7.4e-74 Score=629.29 Aligned_cols=438 Identities=47% Similarity=0.751 Sum_probs=407.1
Q ss_pred CCCCCCCCCCcccCCCcccCccCCccccCCCHHHHHHHHHHcCcee-ccCCCCCCCCCcccCCCCHHHHHHHHHcCCCCC
Q 006824 170 EPIPALDHSLIDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRV-SGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKP 248 (630)
Q Consensus 170 ~~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~p~~~~~~~~l~~~l~~~l~~~~~~~~ 248 (630)
..++.++|+...+.||+++||.+++.+..++.+++..+++...+.+ .+..+|+|+.+|.+++|++.+++.|.+.||.+|
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~p 153 (545)
T PTZ00110 74 KRLQPIDWKSINLVPFEKNFYKEHPEVSALSSKEVDEIRKEKEITIIAGENVPKPVVSFEYTSFPDYILKSLKNAGFTEP 153 (545)
T ss_pred cccCCCCCccccccchhhhcccCChhhhcCCHHHHHHHHHhcCcEEecCCCCCcccCCHhhcCCCHHHHHHHHHCCCCCC
Confidence 4678899999999999999999999999999999999999998886 788999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCce
Q 006824 249 TSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIR 328 (630)
Q Consensus 249 ~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~ 328 (630)
||+|.++||.+++|+|+|+++|||||||++|++|++.++..++......+|.+|||+|||+||.|+.+.+.++....+++
T Consensus 154 t~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~ 233 (545)
T PTZ00110 154 TPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIR 233 (545)
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHhcccCcc
Confidence 99999999999999999999999999999999999999988766556678999999999999999999999999888999
Q ss_pred EEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCcHHHHHHHHhhcCCCCcEEE
Q 006824 329 VSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLL 408 (630)
Q Consensus 329 ~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q~l~ 408 (630)
+.+++||.....+...+..+++|+|+||++|.+++......++++.+|||||||+|++++|..++..++..+++.+|+++
T Consensus 234 ~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~~~q~l~ 313 (545)
T PTZ00110 234 NTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLM 313 (545)
T ss_pred EEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCCCCCeEEE
Confidence 99999999999999999999999999999999999988888999999999999999999999999999999999999999
Q ss_pred EeecccHHHHHHHHHHcC-CCeEEEEcccc-cccccceEEEEEcCCccccHHHHHHhccCCC-CCCCEEEEccchhhHHH
Q 006824 409 FSATMPRKVEKLAREILS-DPVRVTVGEVG-MANEDITQVVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDE 485 (630)
Q Consensus 409 ~SAT~~~~~~~l~~~~~~-~~~~i~~~~~~-~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~-~~~~iLIF~~s~~~~~~ 485 (630)
||||+|..++.+++.++. +|+.+.++... .....+.|.+..+. ...|...|..++.... ...++||||+++..|+.
T Consensus 314 ~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~-~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~ 392 (545)
T PTZ00110 314 WSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVE-EHEKRGKLKMLLQRIMRDGDKILIFVETKKGADF 392 (545)
T ss_pred EEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEe-chhHHHHHHHHHHHhcccCCeEEEEecChHHHHH
Confidence 999999999999999886 58888776654 34456777776664 4467777777776654 56799999999999999
Q ss_pred HHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEEEEeCCCCCHHHHHHHhhhcccCC
Q 006824 486 IESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAG 565 (630)
Q Consensus 486 l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~QriGR~gR~g 565 (630)
++..|...++.+..+||++++.+|..+++.|++|+.+|||||++++||||||++++||+||+|.++..|+||+||+||.|
T Consensus 393 l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G 472 (545)
T PTZ00110 393 LTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAG 472 (545)
T ss_pred HHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHHHHHhhc
Q 006824 566 DKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLAMKVG 609 (630)
Q Consensus 566 ~~~g~~~~l~~~~d~~~~~~l~~~l~~~~~~vp~~L~~la~~~~ 609 (630)
..|.+++|+++.+...+.+|++.|..++|+||++|.+|+....
T Consensus 473 -~~G~ai~~~~~~~~~~~~~l~~~l~~~~q~vp~~l~~~~~~~~ 515 (545)
T PTZ00110 473 -AKGASYTFLTPDKYRLARDLVKVLREAKQPVPPELEKLSNERS 515 (545)
T ss_pred -CCceEEEEECcchHHHHHHHHHHHHHccCCCCHHHHHHHHHhc
Confidence 6799999999999999999999999999999999999997765
No 7
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=6.6e-76 Score=571.62 Aligned_cols=425 Identities=43% Similarity=0.673 Sum_probs=401.8
Q ss_pred CcccCCCcccCccCCccccCCCHHHHHHHHHHcCceeccCCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH
Q 006824 179 LIDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPI 258 (630)
Q Consensus 179 ~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~ 258 (630)
.|.|+.--+..|.|+--+..|++++.+..|+.+.|.+.|..+|+|+.+|.++.||..+++.|++.|+..|||+|.|++|.
T Consensus 124 Gi~Y~ePi~T~WkPP~hir~mS~e~~e~vRk~~~I~veGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPv 203 (610)
T KOG0341|consen 124 GITYEEPIKTAWKPPRHIRKMSEEQRELVRKQLHILVEGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPV 203 (610)
T ss_pred CCcccCcchhccCCcHHHHHhhHHHHHHHHHhheEEeeCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcce
Confidence 46787777888999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCC---cccccCCCeEEEEcccHHHHHHHHHHHHHHhhhc------CceE
Q 006824 259 ILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQP---ELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH------GIRV 329 (630)
Q Consensus 259 il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~---~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~------~~~~ 329 (630)
+++|||+|.+|-||||||++|.||++...+.+. ++..+.||..|||||+|+||.|+++.+..++..+ .+++
T Consensus 204 vLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs 283 (610)
T KOG0341|consen 204 VLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRS 283 (610)
T ss_pred EeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhh
Confidence 999999999999999999999999999888764 4567889999999999999999999999988764 3688
Q ss_pred EEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCcHHHHHHHHhhcCCCCcEEEE
Q 006824 330 SAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLF 409 (630)
Q Consensus 330 ~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q~l~~ 409 (630)
.++.||....++...++.|.+|+|+||++|.+++.+....|.-+.|+++||||+|+++||...++.|+.+++.++|+++|
T Consensus 284 ~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLF 363 (610)
T KOG0341|consen 284 LLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLF 363 (610)
T ss_pred hhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeee
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCccccHHHHHHhccCCCCCCCEEEEccchhhHHHHHHH
Q 006824 410 SATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQ 489 (630)
Q Consensus 410 SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~ 489 (630)
|||+|..++.+++..+..|+.+.++..+.+..++.|.+.++. ...|+.+|++.|++. ..++||||..+.+++.+.+|
T Consensus 364 SATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyVk-qEaKiVylLeCLQKT--~PpVLIFaEkK~DVD~IhEY 440 (610)
T KOG0341|consen 364 SATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYVK-QEAKIVYLLECLQKT--SPPVLIFAEKKADVDDIHEY 440 (610)
T ss_pred eccccHHHHHHHHhhcccceEEecccccccchhHHHHHHHHH-hhhhhhhHHHHhccC--CCceEEEeccccChHHHHHH
Confidence 999999999999999999999999999999999999988885 458999999999875 56899999999999999999
Q ss_pred HHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEEEEeCCCCCHHHHHHHhhhcccCCCCCe
Q 006824 490 LAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDG 569 (630)
Q Consensus 490 L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~QriGR~gR~g~~~g 569 (630)
|--+|+.++.|||+.+|++|..+++.|+.|+..|||||++++.|+|+|++.+|||||+|..++.|+|||||+||.| ++|
T Consensus 441 LLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg-~~G 519 (610)
T KOG0341|consen 441 LLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSG-KTG 519 (610)
T ss_pred HHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCC-Ccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 689
Q ss_pred EEEEEecccc-HHHHHHHHHHHHHcCCCCCHHHHHHHHh
Q 006824 570 TAYTLVTQKE-ARFAGELVNSLIAAGQNVSMELMDLAMK 607 (630)
Q Consensus 570 ~~~~l~~~~d-~~~~~~l~~~l~~~~~~vp~~L~~la~~ 607 (630)
.+.+|++++. ...+-++...|..++|.+|+-|..|+-.
T Consensus 520 iATTfINK~~~esvLlDLK~LL~EakQ~vP~~L~~L~~~ 558 (610)
T KOG0341|consen 520 IATTFINKNQEESVLLDLKHLLQEAKQEVPPVLAELAGP 558 (610)
T ss_pred eeeeeecccchHHHHHHHHHHHHHhhccCCHHHHHhCCC
Confidence 9999999864 5668899999999999999999999744
No 8
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=9.9e-69 Score=587.22 Aligned_cols=431 Identities=31% Similarity=0.529 Sum_probs=391.2
Q ss_pred CCCCCCCCccc-CCCcccCccCCcccc-CCCHHHHHHHHHHcCceeccCCCCCCCCCcccCCCCHHHHHHHHHcCCCCCc
Q 006824 172 IPALDHSLIDY-EPFNKDFYQDSASIS-GMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPT 249 (630)
Q Consensus 172 ~~~~~~~~~~~-~~f~~~f~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~l~~~l~~~l~~~~~~~~~ 249 (630)
-..++|....+ .+|+++||..++... +++..++..+|+.+++.+.|...|+|+.+|.+++|++.+++.|.+.||..||
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~~~g~~~p~pi~~f~~~~l~~~l~~~L~~~g~~~pt 145 (518)
T PLN00206 66 RVAVGAPKPKRLPATDECFYVRDPGSTSGLSSSQAELLRRKLEIHVKGEAVPPPILSFSSCGLPPKLLLNLETAGYEFPT 145 (518)
T ss_pred cCCcCCCchhhcCCcCCcCCccCcchhccCCHHHHHHHHHHCCCEecCCCCCchhcCHHhCCCCHHHHHHHHHcCCCCCC
Confidence 34566666555 778999999887764 5999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCc--ccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCc
Q 006824 250 SIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPE--LQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGI 327 (630)
Q Consensus 250 ~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~--~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~ 327 (630)
|+|.++||.+++|+|+++++|||||||++|++|++.+++..+. .....+|++|||+|||+||.|+.+.+..+....++
T Consensus 146 piQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~ 225 (518)
T PLN00206 146 PIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPF 225 (518)
T ss_pred HHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCc
Confidence 9999999999999999999999999999999999999875432 12346899999999999999999999999888889
Q ss_pred eEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCcHHHHHHHHhhcCCCCcEE
Q 006824 328 RVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTL 407 (630)
Q Consensus 328 ~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q~l 407 (630)
++..++||.....+...+..+++|||+||++|.+++.+....++++.+|||||||+|++++|..++..++..+ +.+|++
T Consensus 226 ~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l-~~~q~l 304 (518)
T PLN00206 226 KTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQAL-SQPQVL 304 (518)
T ss_pred eEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHHHHHHhC-CCCcEE
Confidence 9999999999999988899999999999999999999888889999999999999999999999999999888 478999
Q ss_pred EEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCccccHHHHHHhccCCC-CCCCEEEEccchhhHHHH
Q 006824 408 LFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEI 486 (630)
Q Consensus 408 ~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~-~~~~iLIF~~s~~~~~~l 486 (630)
+||||+++.++.++..++.++..+.++........+.+.+..+.. ..|...|...+.... ..+++||||+++..++.+
T Consensus 305 ~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~-~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l 383 (518)
T PLN00206 305 LFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVET-KQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLL 383 (518)
T ss_pred EEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccc-hhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHH
Confidence 999999999999999999999999888776666777777776653 456667777775432 245899999999999999
Q ss_pred HHHHHh-CCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEEEEeCCCCCHHHHHHHhhhcccCC
Q 006824 487 ESQLAQ-KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAG 565 (630)
Q Consensus 487 ~~~L~~-~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~QriGR~gR~g 565 (630)
+..|.. .++.+..+||++++.+|..+++.|++|+.+|||||++++||||+|++++||+||+|.++..|+||+||+||.|
T Consensus 384 ~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g 463 (518)
T PLN00206 384 ANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMG 463 (518)
T ss_pred HHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCC
Confidence 999975 5899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006824 566 DKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLA 605 (630)
Q Consensus 566 ~~~g~~~~l~~~~d~~~~~~l~~~l~~~~~~vp~~L~~la 605 (630)
..|.+++|++..+...+.++++.|..+++.+|++|.++.
T Consensus 464 -~~G~ai~f~~~~~~~~~~~l~~~l~~~~~~vp~~l~~~~ 502 (518)
T PLN00206 464 -EKGTAIVFVNEEDRNLFPELVALLKSSGAAIPRELANSR 502 (518)
T ss_pred -CCeEEEEEEchhHHHHHHHHHHHHHHcCCCCCHHHHhCh
Confidence 579999999999999999999999999999999999865
No 9
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.3e-69 Score=526.05 Aligned_cols=366 Identities=39% Similarity=0.642 Sum_probs=346.8
Q ss_pred CCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEE
Q 006824 223 PVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGV 302 (630)
Q Consensus 223 p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vL 302 (630)
...+|.++++.+.+.+++...++.+||++|+++||.++.|+|+|+.|.||||||.+|++|++++++..|. .+.+|
T Consensus 59 ~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~-----~~~~l 133 (476)
T KOG0330|consen 59 SFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPK-----LFFAL 133 (476)
T ss_pred hhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCC-----CceEE
Confidence 4578999999999999999999999999999999999999999999999999999999999999998764 48999
Q ss_pred EEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHH-ccccccCceeEEEecch
Q 006824 303 ICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLK-MKALTMSRVTYLVLDEA 381 (630)
Q Consensus 303 il~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~-~~~~~l~~i~~lVvDEa 381 (630)
||+||||||.||.+.+..+....|+++.++.||.....+...+.+.++||||||++|.++++ .+.+.+..+.++|+|||
T Consensus 134 VLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEA 213 (476)
T KOG0330|consen 134 VLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEA 213 (476)
T ss_pred EecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchH
Confidence 99999999999999999999999999999999999999999999999999999999999998 57788999999999999
Q ss_pred hhhhcCCcHHHHHHHHhhcCCCCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCccccHHHHH
Q 006824 382 DRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLL 461 (630)
Q Consensus 382 h~~~~~~~~~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~ 461 (630)
|+++++.|...+..|+..++..+|+++||||||..+.++.+.-+.+|+.+.+.........+.|.+.+++. ..|..+|+
T Consensus 214 DrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~-k~K~~yLV 292 (476)
T KOG0330|consen 214 DRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPG-KDKDTYLV 292 (476)
T ss_pred HhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccc-cccchhHH
Confidence 99999999999999999999999999999999999999999999999999998888888899999998865 46888888
Q ss_pred HhccCCCCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccE
Q 006824 462 EKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKS 541 (630)
Q Consensus 462 ~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~ 541 (630)
.+|.... ...+||||++...++.++-.|...|+.+..+||.|+|..|.-+++.|++|...|||||++++||+|||.|++
T Consensus 293 ~ll~e~~-g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~ 371 (476)
T KOG0330|consen 293 YLLNELA-GNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDV 371 (476)
T ss_pred HHHHhhc-CCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceE
Confidence 8887653 478999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEeccccHHHHHHHHHHHHHcCCC
Q 006824 542 VVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQN 596 (630)
Q Consensus 542 VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~~~~~l~~~l~~~~~~ 596 (630)
|||||.|.+..+|+||+||++|+| ..|.+++|++.+|.....+|...+......
T Consensus 372 VVNyDiP~~skDYIHRvGRtaRaG-rsG~~ItlVtqyDve~~qrIE~~~gkkl~~ 425 (476)
T KOG0330|consen 372 VVNYDIPTHSKDYIHRVGRTARAG-RSGKAITLVTQYDVELVQRIEHALGKKLPE 425 (476)
T ss_pred EEecCCCCcHHHHHHHcccccccC-CCcceEEEEehhhhHHHHHHHHHHhcCCCc
Confidence 999999999999999999999999 689999999999999999998888776644
No 10
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-67 Score=540.73 Aligned_cols=396 Identities=43% Similarity=0.704 Sum_probs=369.0
Q ss_pred CceeccCCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCC
Q 006824 212 AIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQP 291 (630)
Q Consensus 212 ~~~~~~~~~p~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~ 291 (630)
...+.|..+|.++.+|.+-.+.+.+...+...++..|||+|+.++|.+..|+|++.||+||||||.+|++|++.++++..
T Consensus 61 ~v~~~G~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~ 140 (482)
T KOG0335|consen 61 PVKVSGRDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEG 140 (482)
T ss_pred eeeccCCccCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcC
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred ccc-----ccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHcc
Q 006824 292 ELQ-----KEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK 366 (630)
Q Consensus 292 ~~~-----~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~ 366 (630)
... ....|.+||++|||+||.|++++++++....+++++..|||.+...+.+.+.++|+|+||||++|.++++.+
T Consensus 141 ~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g 220 (482)
T KOG0335|consen 141 PEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERG 220 (482)
T ss_pred cccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcc
Confidence 321 113599999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCceeEEEecchhhhhc-CCcHHHHHHHHhhcCC----CCcEEEEeecccHHHHHHHHHHcCC-CeEEEEccccccc
Q 006824 367 ALTMSRVTYLVLDEADRMFD-LGFEPQIRSIVGQIRP----DRQTLLFSATMPRKVEKLAREILSD-PVRVTVGEVGMAN 440 (630)
Q Consensus 367 ~~~l~~i~~lVvDEah~~~~-~~~~~~v~~i~~~l~~----~~q~l~~SAT~~~~~~~l~~~~~~~-~~~i~~~~~~~~~ 440 (630)
.+.|..+.|+||||||+|++ ++|.++++.|+.+... .+|+++||||+|..++.++..++.+ .+.+.++..+...
T Consensus 221 ~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~ 300 (482)
T KOG0335|consen 221 KISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTS 300 (482)
T ss_pred eeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeecccc
Confidence 99999999999999999999 9999999999998853 7999999999999999999999886 8999999999999
Q ss_pred ccceEEEEEcCCccccHHHHHHhccCCC---CCC-----CEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHH
Q 006824 441 EDITQVVHVIPSDAEKLPWLLEKLPGMI---DDG-----DVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEI 512 (630)
Q Consensus 441 ~~i~q~~~~~~~~~~k~~~l~~~l~~~~---~~~-----~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~ 512 (630)
.++.|.+.++.. ..|...|+++|.... ..+ +++|||.++..+..++.+|...++++..|||+.+|.+|.++
T Consensus 301 ~ni~q~i~~V~~-~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~a 379 (482)
T KOG0335|consen 301 ENITQKILFVNE-MEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQA 379 (482)
T ss_pred ccceeEeeeecc-hhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHH
Confidence 999999999864 577888888876543 233 79999999999999999999999999999999999999999
Q ss_pred HHHhhcCCceEEEEcCCcccCCCCCCccEEEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEeccccHHHHHHHHHHHHH
Q 006824 513 LQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIA 592 (630)
Q Consensus 513 ~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~~~~~l~~~l~~ 592 (630)
++.|++|+.+|||||++++||||||+|++||+||+|.+..+|+|||||+||.| ..|.++.|+...+......|++.|..
T Consensus 380 l~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~G-n~G~atsf~n~~~~~i~~~L~~~l~e 458 (482)
T KOG0335|consen 380 LNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVG-NGGRATSFFNEKNQNIAKALVEILTE 458 (482)
T ss_pred HHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCC-CCceeEEEeccccchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 57999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHhhc
Q 006824 593 AGQNVSMELMDLAMKVG 609 (630)
Q Consensus 593 ~~~~vp~~L~~la~~~~ 609 (630)
++|.+|+||.+++....
T Consensus 459 a~q~vP~wl~~~~~~~~ 475 (482)
T KOG0335|consen 459 ANQEVPQWLSELSRERE 475 (482)
T ss_pred hcccCcHHHHhhhhhcc
Confidence 99999999999775543
No 11
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.4e-67 Score=526.41 Aligned_cols=375 Identities=37% Similarity=0.574 Sum_probs=343.2
Q ss_pred CCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEE
Q 006824 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVI 303 (630)
Q Consensus 224 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLi 303 (630)
..+|.+++|+..+++++...||..|||||..+||..+-|+|++.||.||||||.+|++|+|.+++..|.. ....+|||
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~--~~~TRVLV 257 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKK--VAATRVLV 257 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCccc--CcceeEEE
Confidence 3689999999999999999999999999999999999999999999999999999999999999987743 33678999
Q ss_pred EcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHc-cccccCceeEEEecchh
Q 006824 304 CAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM-KALTMSRVTYLVLDEAD 382 (630)
Q Consensus 304 l~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~-~~~~l~~i~~lVvDEah 382 (630)
|||||+|+.|++...++++....+.++++.||.+...|-..|++++||+|+||++|++++++ ..+.+.+|.++|+||||
T Consensus 258 L~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEAD 337 (691)
T KOG0338|consen 258 LVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEAD 337 (691)
T ss_pred EeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHH
Confidence 99999999999999999999999999999999999999999999999999999999999986 46789999999999999
Q ss_pred hhhcCCcHHHHHHHHhhcCCCCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCC--ccccHHHH
Q 006824 383 RMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPS--DAEKLPWL 460 (630)
Q Consensus 383 ~~~~~~~~~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~--~~~k~~~l 460 (630)
+|++.+|..+++.|+..|+.+||+++|||||+..+..|+.--+.+|+++.+...........|.|..+.. ...+-..|
T Consensus 338 RMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l 417 (691)
T KOG0338|consen 338 RMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAML 417 (691)
T ss_pred HHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHH
Confidence 9999999999999999999999999999999999999999999999999999888888888888876653 22344445
Q ss_pred HHhccCCCCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCcc
Q 006824 461 LEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIK 540 (630)
Q Consensus 461 ~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~ 540 (630)
..++... ....++||+.++..|.++.-.|.-.|++++-+||.++|.+|.+.++.|++++++|||||++++|||||++|.
T Consensus 418 ~~l~~rt-f~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~ 496 (691)
T KOG0338|consen 418 ASLITRT-FQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQ 496 (691)
T ss_pred HHHHHHh-cccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCcccee
Confidence 5555444 367899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEeccccHHHHHHHHHHHHHc-----CCCCCHHHH
Q 006824 541 SVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAA-----GQNVSMELM 602 (630)
Q Consensus 541 ~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~~~~~l~~~l~~~-----~~~vp~~L~ 602 (630)
+||||.+|.++..|+||+||+.|+| +.|.+++|+...|...+..|++.-..+ +..+|++.+
T Consensus 497 tVINy~mP~t~e~Y~HRVGRTARAG-RaGrsVtlvgE~dRkllK~iik~~~~a~~klk~R~i~~~~I 562 (691)
T KOG0338|consen 497 TVINYAMPKTIEHYLHRVGRTARAG-RAGRSVTLVGESDRKLLKEIIKSSTKAGSKLKNRNIPPEVI 562 (691)
T ss_pred EEEeccCchhHHHHHHHhhhhhhcc-cCcceEEEeccccHHHHHHHHhhhhhcccchhhcCCCHHHH
Confidence 9999999999999999999999999 689999999999999999999885433 344555443
No 12
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.5e-66 Score=559.74 Aligned_cols=374 Identities=46% Similarity=0.726 Sum_probs=343.2
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEE
Q 006824 225 KTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC 304 (630)
Q Consensus 225 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil 304 (630)
.+|.++++++.++++|.+.||..|||+|.++||.++.|+|+++.|+||||||++|++|++.++.... .....+ +||+
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~--~~~~~~-aLil 105 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSV--ERKYVS-ALIL 105 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhccc--ccCCCc-eEEE
Confidence 7899999999999999999999999999999999999999999999999999999999999976421 111122 9999
Q ss_pred cccHHHHHHHHHHHHHHhhhc-CceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhh
Q 006824 305 APTRELAHQIYLETKKFAKSH-GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR 383 (630)
Q Consensus 305 ~Ptr~La~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~ 383 (630)
+|||+||.|+++.+.++.... ++++.+++||.+...+...+..|++||||||++|++++.+..+.++.+.++|+||||+
T Consensus 106 ~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADr 185 (513)
T COG0513 106 APTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADR 185 (513)
T ss_pred CCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhh
Confidence 999999999999999999988 7999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCcHHHHHHHHhhcCCCCcEEEEeecccHHHHHHHHHHcCCCeEEEEccccc--ccccceEEEEEcCCccccHHHHH
Q 006824 384 MFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGM--ANEDITQVVHVIPSDAEKLPWLL 461 (630)
Q Consensus 384 ~~~~~~~~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~--~~~~i~q~~~~~~~~~~k~~~l~ 461 (630)
|+++||.+.+..|+..+++++|+++||||+|..+..+++.++.+|..+.+..... ....+.|.+..+.....|+..|.
T Consensus 186 mLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~ 265 (513)
T COG0513 186 MLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLL 265 (513)
T ss_pred hhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999888875444 78899999999876556888888
Q ss_pred HhccCCCCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccE
Q 006824 462 EKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKS 541 (630)
Q Consensus 462 ~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~ 541 (630)
.++... ...++||||+++..++.++..|...|+++..|||+++|.+|.++++.|++|+.+|||||++++|||||++|++
T Consensus 266 ~ll~~~-~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~ 344 (513)
T COG0513 266 KLLKDE-DEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSH 344 (513)
T ss_pred HHHhcC-CCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccce
Confidence 888764 3347999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEeccc-cHHHHHHHHHHHHHc---CCCCCHHHHH
Q 006824 542 VVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQK-EARFAGELVNSLIAA---GQNVSMELMD 603 (630)
Q Consensus 542 VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~-d~~~~~~l~~~l~~~---~~~vp~~L~~ 603 (630)
|||||+|.+++.|+||+||+||+| ..|.+++|+++. +...+..+.+.+... ...+|.....
T Consensus 345 VinyD~p~~~e~yvHRiGRTgRaG-~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~~~~~~~~~~~~ 409 (513)
T COG0513 345 VINYDLPLDPEDYVHRIGRTGRAG-RKGVAISFVTEEEEVKKLKRIEKRLERKLPSAVLLPLDEPE 409 (513)
T ss_pred eEEccCCCCHHHheeccCccccCC-CCCeEEEEeCcHHHHHHHHHHHHHHhccccccccCCcchhh
Confidence 999999999999999999999999 689999999986 889999999887665 3456654443
No 13
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.7e-64 Score=472.34 Aligned_cols=377 Identities=33% Similarity=0.561 Sum_probs=351.8
Q ss_pred CCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCe
Q 006824 221 PRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPI 300 (630)
Q Consensus 221 p~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~ 300 (630)
-.++.+|+++||+..+++++...||.+|+.+|+.|++.+++|+|++.++..|+|||.+|.+.++..+--. .....
T Consensus 23 ~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~-----~r~tQ 97 (400)
T KOG0328|consen 23 VKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDIS-----VRETQ 97 (400)
T ss_pred cccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccc-----cceee
Confidence 4578899999999999999999999999999999999999999999999999999998887776554221 22467
Q ss_pred EEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecc
Q 006824 301 GVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDE 380 (630)
Q Consensus 301 vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDE 380 (630)
+|||.|||+||.|+.+.+..++...++.+..+.||.+..+.++.+.-|++++.+||+++.+++++..+..+.+.++|+||
T Consensus 98 ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDE 177 (400)
T KOG0328|consen 98 ALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDE 177 (400)
T ss_pred EEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCcHHHHHHHHhhcCCCCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCccccHHHH
Q 006824 381 ADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWL 460 (630)
Q Consensus 381 ah~~~~~~~~~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l 460 (630)
||.|++.+|..++..++..+++..|++++|||+|.++.++...|+.+|+.+.+...+...+.|.|.+.-+..+.-|+..|
T Consensus 178 aDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKfdtL 257 (400)
T KOG0328|consen 178 ADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTL 257 (400)
T ss_pred HHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987776688888
Q ss_pred HHhccCCCCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCcc
Q 006824 461 LEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIK 540 (630)
Q Consensus 461 ~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~ 540 (630)
..+...+ .-.+.+||||++..++.|.+.|+..++.+.+.||+|.|++|..++..|++|+.+|||+|++.+||+|+|.|+
T Consensus 258 cdLYd~L-tItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVs 336 (400)
T KOG0328|consen 258 CDLYDTL-TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVS 336 (400)
T ss_pred HHHhhhh-ehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeE
Confidence 7766443 345889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHHH
Q 006824 541 SVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDL 604 (630)
Q Consensus 541 ~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~~~~~l~~~l~~~~~~vp~~L~~l 604 (630)
+|||||+|.+.+.|+|||||.||.| ..|.++-|+...|.+.+.++.+.+.-.-.++|-.+.++
T Consensus 337 lviNYDLP~nre~YIHRIGRSGRFG-RkGvainFVk~~d~~~lrdieq~yst~i~emp~nvad~ 399 (400)
T KOG0328|consen 337 LVINYDLPNNRELYIHRIGRSGRFG-RKGVAINFVKSDDLRILRDIEQYYSTQIDEMPMNVADL 399 (400)
T ss_pred EEEecCCCccHHHHhhhhccccccC-CcceEEEEecHHHHHHHHHHHHHHhhhcccccchhhhc
Confidence 9999999999999999999999999 67999999999999999999999998888888765543
No 14
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1.4e-61 Score=487.05 Aligned_cols=361 Identities=38% Similarity=0.548 Sum_probs=331.0
Q ss_pred CCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEE
Q 006824 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVI 303 (630)
Q Consensus 224 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLi 303 (630)
...|.+..|++..+++|..+||..+|++|...++.++.|+|+++.|.||+|||++|++|++.++++.+... .++-.+||
T Consensus 81 ~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~-r~~~~vlI 159 (543)
T KOG0342|consen 81 TFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKP-RNGTGVLI 159 (543)
T ss_pred hhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCC-CCCeeEEE
Confidence 45677888999999999999999999999999999999999999999999999999999999999876433 37888999
Q ss_pred EcccHHHHHHHHHHHHHHhhhc-CceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHcccc-ccCceeEEEecch
Q 006824 304 CAPTRELAHQIYLETKKFAKSH-GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKAL-TMSRVTYLVLDEA 381 (630)
Q Consensus 304 l~Ptr~La~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~-~l~~i~~lVvDEa 381 (630)
|||||+||.|++.+++++.... ++.+..+.||.+......++.++|.|+||||++|.+++++... ..+...++|+|||
T Consensus 160 i~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEA 239 (543)
T KOG0342|consen 160 ICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEA 239 (543)
T ss_pred ecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecc
Confidence 9999999999999999999988 9999999999999999999999999999999999999988544 3466789999999
Q ss_pred hhhhcCCcHHHHHHHHhhcCCCCcEEEEeecccHHHHHHHHHHcCC-CeEEEEccc--ccccccceEEEEEcCCccccHH
Q 006824 382 DRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSD-PVRVTVGEV--GMANEDITQVVHVIPSDAEKLP 458 (630)
Q Consensus 382 h~~~~~~~~~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~-~~~i~~~~~--~~~~~~i~q~~~~~~~~~~k~~ 458 (630)
|+++++||...+..|+..++..+|+++||||.++.++++++..+.. |..+.+... ..+...+.|.+.+.+.. .++.
T Consensus 240 DrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~-~~f~ 318 (543)
T KOG0342|consen 240 DRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSD-SRFS 318 (543)
T ss_pred hhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEecccc-chHH
Confidence 9999999999999999999999999999999999999999987765 777766543 34567888988887654 4588
Q ss_pred HHHHhccCCCCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCC
Q 006824 459 WLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKS 538 (630)
Q Consensus 459 ~l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~ 538 (630)
.++.+|++.....++||||+|...+..++..|....++|..|||+++|..|..+...|.+.+..|||||++++||+|+|+
T Consensus 319 ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~ 398 (543)
T KOG0342|consen 319 LLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPD 398 (543)
T ss_pred HHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCC
Confidence 88899988776689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEeccccHHHHHHHH
Q 006824 539 IKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELV 587 (630)
Q Consensus 539 v~~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~~~~~l~ 587 (630)
|++||.||+|.++.+|+||+||+||.| +.|.++.|+.+++..++..|.
T Consensus 399 V~~VvQ~~~P~d~~~YIHRvGRTaR~g-k~G~alL~l~p~El~Flr~LK 446 (543)
T KOG0342|consen 399 VDWVVQYDPPSDPEQYIHRVGRTAREG-KEGKALLLLAPWELGFLRYLK 446 (543)
T ss_pred ceEEEEeCCCCCHHHHHHHhccccccC-CCceEEEEeChhHHHHHHHHh
Confidence 999999999999999999999999988 789999999999988877665
No 15
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.3e-60 Score=511.78 Aligned_cols=367 Identities=37% Similarity=0.579 Sum_probs=330.2
Q ss_pred CCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCccc--ccCCCeE
Q 006824 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQ--KEEGPIG 301 (630)
Q Consensus 224 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~--~~~~~~v 301 (630)
-.+|.+++|++.++++|...||..|+|+|.++||.+++|+|++++||||||||++|++|++.+++..+... ...++++
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~ 86 (423)
T PRK04837 7 EQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRA 86 (423)
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 36899999999999999999999999999999999999999999999999999999999999997654321 2347899
Q ss_pred EEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecch
Q 006824 302 VICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEA 381 (630)
Q Consensus 302 Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEa 381 (630)
|||+|||+||.|+++.+..+....++++..++||.....+...+..+++|+|+||++|.+++......+..+.+||||||
T Consensus 87 lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEa 166 (423)
T PRK04837 87 LIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEA 166 (423)
T ss_pred EEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecH
Confidence 99999999999999999999998899999999999988888888889999999999999999888888999999999999
Q ss_pred hhhhcCCcHHHHHHHHhhcCC--CCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCccccHHH
Q 006824 382 DRMFDLGFEPQIRSIVGQIRP--DRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPW 459 (630)
Q Consensus 382 h~~~~~~~~~~v~~i~~~l~~--~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~ 459 (630)
|+|++++|...+..++..++. .+|+++||||++..+..++..++.+|..+.+.........+.+.+... ....|...
T Consensus 167 d~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~-~~~~k~~~ 245 (423)
T PRK04837 167 DRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYP-SNEEKMRL 245 (423)
T ss_pred HHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeC-CHHHHHHH
Confidence 999999999999999998874 577899999999999999999999998888766555555666655544 34567777
Q ss_pred HHHhccCCCCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCc
Q 006824 460 LLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSI 539 (630)
Q Consensus 460 l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v 539 (630)
|..++... ...++||||+++..|+.++..|...|+.+..+||++++.+|..+++.|++|+++|||||++++||+|+|++
T Consensus 246 l~~ll~~~-~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v 324 (423)
T PRK04837 246 LQTLIEEE-WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAV 324 (423)
T ss_pred HHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCcccc
Confidence 77776543 35689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEeccccHHHHHHHHHHHHHc
Q 006824 540 KSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAA 593 (630)
Q Consensus 540 ~~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~~~~~l~~~l~~~ 593 (630)
++||+||+|.++..|+||+||+||.| +.|.+++|+++.+...+..+.+.+...
T Consensus 325 ~~VI~~d~P~s~~~yiqR~GR~gR~G-~~G~ai~~~~~~~~~~~~~i~~~~~~~ 377 (423)
T PRK04837 325 THVFNYDLPDDCEDYVHRIGRTGRAG-ASGHSISLACEEYALNLPAIETYIGHS 377 (423)
T ss_pred CEEEEeCCCCchhheEeccccccCCC-CCeeEEEEeCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999 679999999999988888887666444
No 16
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-61 Score=466.62 Aligned_cols=364 Identities=35% Similarity=0.518 Sum_probs=327.1
Q ss_pred CCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEE
Q 006824 223 PVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGV 302 (630)
Q Consensus 223 p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vL 302 (630)
....|..+||++++.+.++..|+.+|||+|..|||.|+.|+|+|.+|.||||||.+|.+|+++.+...| +|-.+|
T Consensus 5 t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP-----~giFal 79 (442)
T KOG0340|consen 5 TAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDP-----YGIFAL 79 (442)
T ss_pred ccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCC-----CcceEE
Confidence 457899999999999999999999999999999999999999999999999999999999999997765 477899
Q ss_pred EEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHcc----ccccCceeEEEe
Q 006824 303 ICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK----ALTMSRVTYLVL 378 (630)
Q Consensus 303 il~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~----~~~l~~i~~lVv 378 (630)
|++|||+||.|+.+.+..+.+..++++.+++||...-.+...|...+||+|+||++|.+.+..+ ...++++.++|+
T Consensus 80 vlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVl 159 (442)
T KOG0340|consen 80 VLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVL 159 (442)
T ss_pred EecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999765 335789999999
Q ss_pred cchhhhhcCCcHHHHHHHHhhcCCCCcEEEEeecccHHHHHHHHHHcCCC--eEEEEcccccccccceEEEEEcCCcccc
Q 006824 379 DEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDP--VRVTVGEVGMANEDITQVVHVIPSDAEK 456 (630)
Q Consensus 379 DEah~~~~~~~~~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~--~~i~~~~~~~~~~~i~q~~~~~~~~~~k 456 (630)
||||+|++.+|..++..+++.+++.||+++||||++..+..+..--...+ ..+.............|.+..++ ...|
T Consensus 160 DEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~-~~vk 238 (442)
T KOG0340|consen 160 DEADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVS-IDVK 238 (442)
T ss_pred cchhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecc-hhhh
Confidence 99999999999999999999999999999999999988776655444432 22222223344455667776664 5678
Q ss_pred HHHHHHhccCCCC--CCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCC
Q 006824 457 LPWLLEKLPGMID--DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGL 534 (630)
Q Consensus 457 ~~~l~~~l~~~~~--~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gl 534 (630)
..+|+..|..... .+.++||+++...|+.|+..|+..++.++.+|+.|+|.+|..++.+|+++..+|||||++++||+
T Consensus 239 daYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGL 318 (442)
T KOG0340|consen 239 DAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGL 318 (442)
T ss_pred HHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCC
Confidence 8899999987755 67899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEeccccHHHHHHHHHHHHHc
Q 006824 535 DIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAA 593 (630)
Q Consensus 535 di~~v~~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~~~~~l~~~l~~~ 593 (630)
|||.|..|||||.|..|.+|+||+||+.|+| ..|.++.++++.|...+..|.+.+...
T Consensus 319 DIP~V~LVvN~diPr~P~~yiHRvGRtARAG-R~G~aiSivt~rDv~l~~aiE~~igkK 376 (442)
T KOG0340|consen 319 DIPTVELVVNHDIPRDPKDYIHRVGRTARAG-RKGMAISIVTQRDVELLQAIEEEIGKK 376 (442)
T ss_pred CCCceeEEEecCCCCCHHHHHHhhcchhccc-CCcceEEEechhhHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999 679999999999999988887776543
No 17
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=1.7e-59 Score=508.26 Aligned_cols=364 Identities=40% Similarity=0.656 Sum_probs=327.3
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccc-cCCCeEEEE
Q 006824 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQK-EEGPIGVIC 304 (630)
Q Consensus 226 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~-~~~~~vLil 304 (630)
+|++++|++.+++.|.+.||..|||+|.++||.+++|+|+|+++|||||||++|++|++.++........ ...+++|||
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 6899999999999999999999999999999999999999999999999999999999999865432211 234689999
Q ss_pred cccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhh
Q 006824 305 APTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRM 384 (630)
Q Consensus 305 ~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~ 384 (630)
+||++||.|+.+.+..+....++++..++||.+...+...+..+++|+|+||++|.+++......++++++|||||||+|
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~l 161 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRM 161 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHH
Confidence 99999999999999999988899999999999998888888889999999999999999888888999999999999999
Q ss_pred hcCCcHHHHHHHHhhcCCCCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCccccHHHHHHhc
Q 006824 385 FDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKL 464 (630)
Q Consensus 385 ~~~~~~~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l 464 (630)
++++|...+..++..++..+|+++||||++..+..++..++.+|..+.+.........+.+.+..+.. ..+...+..++
T Consensus 162 l~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~l~ 240 (456)
T PRK10590 162 LDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDK-KRKRELLSQMI 240 (456)
T ss_pred hccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCH-HHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888776655556667777766643 34444444444
Q ss_pred cCCCCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEEEE
Q 006824 465 PGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN 544 (630)
Q Consensus 465 ~~~~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI~ 544 (630)
.. ....++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+++|||||+++++|||||++++||+
T Consensus 241 ~~-~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~ 319 (456)
T PRK10590 241 GK-GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVN 319 (456)
T ss_pred Hc-CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEE
Confidence 32 23468999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHHHHHhhhcccCCCCCeEEEEEeccccHHHHHHHHHHHHH
Q 006824 545 FDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIA 592 (630)
Q Consensus 545 ~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~~~~~l~~~l~~ 592 (630)
|++|.++..|+||+||+||.| ..|.+++|++..+...+..+.+.+..
T Consensus 320 ~~~P~~~~~yvqR~GRaGR~g-~~G~ai~l~~~~d~~~~~~ie~~l~~ 366 (456)
T PRK10590 320 YELPNVPEDYVHRIGRTGRAA-ATGEALSLVCVDEHKLLRDIEKLLKK 366 (456)
T ss_pred eCCCCCHHHhhhhccccccCC-CCeeEEEEecHHHHHHHHHHHHHhcC
Confidence 999999999999999999999 67999999999999988888877643
No 18
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.4e-60 Score=470.86 Aligned_cols=355 Identities=36% Similarity=0.553 Sum_probs=316.3
Q ss_pred CCcccCC--CCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEE
Q 006824 225 KTFEDCG--FSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGV 302 (630)
Q Consensus 225 ~~~~~~~--l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vL 302 (630)
.+|++++ |.+++++++...||...||+|..+||.+++++|+++.++||||||++|++|++..++.+........-.+|
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgal 83 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGAL 83 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEE
Confidence 4577665 44999999999999999999999999999999999999999999999999999998765432222234689
Q ss_pred EEcccHHHHHHHHHHHHHHhhh-cCceEEEEECCCChHHHHHHHHc-CCcEEEeChHHHHHHHHcccccc--CceeEEEe
Q 006824 303 ICAPTRELAHQIYLETKKFAKS-HGIRVSAVYGGMSKLDQFKELKA-GCEIVIATPGRLIDMLKMKALTM--SRVTYLVL 378 (630)
Q Consensus 303 il~Ptr~La~Q~~~~~~~~~~~-~~~~~~~~~gg~~~~~~~~~l~~-~~dIiv~Tp~~L~~~l~~~~~~l--~~i~~lVv 378 (630)
||+|||+||.||.+.+..|... ..+++.++.||.+..+++..+.. ++.|+|||||+|.+++.+....+ ++++++|+
T Consensus 84 IIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVL 163 (567)
T KOG0345|consen 84 IISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVL 163 (567)
T ss_pred EecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEe
Confidence 9999999999999999999887 58899999999999888887764 78899999999999998855444 59999999
Q ss_pred cchhhhhcCCcHHHHHHHHhhcCCCCcEEEEeecccHHHHHHHHHHcCCCeEEEEccccc--ccccceEEEEEcCCcccc
Q 006824 379 DEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGM--ANEDITQVVHVIPSDAEK 456 (630)
Q Consensus 379 DEah~~~~~~~~~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~--~~~~i~q~~~~~~~~~~k 456 (630)
||||++++|||..+++.|++.++++|+|=+||||...++.++++..++||+.+.+..... +.......+..+ ....|
T Consensus 164 DEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~-~a~eK 242 (567)
T KOG0345|consen 164 DEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVC-EADEK 242 (567)
T ss_pred cchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEe-cHHHH
Confidence 999999999999999999999999999999999999999999999999999999987665 444555555555 56789
Q ss_pred HHHHHHhccCCCCCCCEEEEccchhhHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCC
Q 006824 457 LPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK--GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGL 534 (630)
Q Consensus 457 ~~~l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~--~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gl 534 (630)
...|+.+|... ..+++|||.+|-..++.....|... ...+..+||.|++..|..++..|.+....+|+||++++|||
T Consensus 243 ~~~lv~~L~~~-~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGl 321 (567)
T KOG0345|consen 243 LSQLVHLLNNN-KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGL 321 (567)
T ss_pred HHHHHHHHhcc-ccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccC
Confidence 99999999874 4679999999999999998888765 67899999999999999999999998889999999999999
Q ss_pred CCCCccEEEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEeccccHHH
Q 006824 535 DIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARF 582 (630)
Q Consensus 535 di~~v~~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~~ 582 (630)
|||++++||.||+|.++..|+||+||++|+| ..|.+++|+.+.+..+
T Consensus 322 Dip~iD~VvQ~DpP~~~~~FvHR~GRTaR~g-r~G~Aivfl~p~E~aY 368 (567)
T KOG0345|consen 322 DIPGIDLVVQFDPPKDPSSFVHRCGRTARAG-REGNAIVFLNPREEAY 368 (567)
T ss_pred CCCCceEEEecCCCCChhHHHhhcchhhhcc-CccceEEEecccHHHH
Confidence 9999999999999999999999999999999 6799999999966443
No 19
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=4.8e-59 Score=513.62 Aligned_cols=366 Identities=37% Similarity=0.603 Sum_probs=327.7
Q ss_pred CCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCccc--ccCCCeE
Q 006824 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQ--KEEGPIG 301 (630)
Q Consensus 224 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~--~~~~~~v 301 (630)
..+|.+++|++.+++.|.+.||..|||+|.++||.++.|+|+++++|||||||++|++|++.+++..+... ...++++
T Consensus 8 ~~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~ra 87 (572)
T PRK04537 8 DLTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRA 87 (572)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 34699999999999999999999999999999999999999999999999999999999999987654221 2236899
Q ss_pred EEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHcc-ccccCceeEEEecc
Q 006824 302 VICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK-ALTMSRVTYLVLDE 380 (630)
Q Consensus 302 Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~-~~~l~~i~~lVvDE 380 (630)
|||+||++||.|+++.+.++....++++..++||.....+...+..+++|||+||++|.+++... .+.+..+++|||||
T Consensus 88 LIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDE 167 (572)
T PRK04537 88 LILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDE 167 (572)
T ss_pred EEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecC
Confidence 99999999999999999999998899999999999988888888888999999999999998764 46688999999999
Q ss_pred hhhhhcCCcHHHHHHHHhhcCC--CCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCccccHH
Q 006824 381 ADRMFDLGFEPQIRSIVGQIRP--DRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLP 458 (630)
Q Consensus 381 ah~~~~~~~~~~v~~i~~~l~~--~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~ 458 (630)
||+|++++|...+..++..++. .+|+++||||++..+..++..++.+|..+.+.........+.+.+... ....|..
T Consensus 168 Ah~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~-~~~~k~~ 246 (572)
T PRK04537 168 ADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFP-ADEEKQT 246 (572)
T ss_pred HHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEec-CHHHHHH
Confidence 9999999999999999998876 789999999999999999999999988777655555555666766554 3456777
Q ss_pred HHHHhccCCCCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCC
Q 006824 459 WLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKS 538 (630)
Q Consensus 459 ~l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~ 538 (630)
.|..++... ...++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+++|||||+++++|||+++
T Consensus 247 ~L~~ll~~~-~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~ 325 (572)
T PRK04537 247 LLLGLLSRS-EGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDG 325 (572)
T ss_pred HHHHHHhcc-cCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccC
Confidence 777777543 4568999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEeccccHHHHHHHHHHHHH
Q 006824 539 IKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIA 592 (630)
Q Consensus 539 v~~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~~~~~l~~~l~~ 592 (630)
+++||||++|.++..|+||+||+||.| +.|.+++|++..+...+.++.+.+..
T Consensus 326 V~~VInyd~P~s~~~yvqRiGRaGR~G-~~G~ai~~~~~~~~~~l~~i~~~~~~ 378 (572)
T PRK04537 326 VKYVYNYDLPFDAEDYVHRIGRTARLG-EEGDAISFACERYAMSLPDIEAYIEQ 378 (572)
T ss_pred CCEEEEcCCCCCHHHHhhhhcccccCC-CCceEEEEecHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999 67999999999988888888776643
No 20
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=5.1e-59 Score=506.70 Aligned_cols=359 Identities=40% Similarity=0.626 Sum_probs=326.8
Q ss_pred CCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEE
Q 006824 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVI 303 (630)
Q Consensus 224 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLi 303 (630)
+.+|.+++|++.++++|.+.||..|||+|.++||.+++|+|++++||||||||++|++|++.++... ..++++||
T Consensus 3 ~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~-----~~~~~~li 77 (460)
T PRK11776 3 MTAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVK-----RFRVQALV 77 (460)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhc-----cCCceEEE
Confidence 3579999999999999999999999999999999999999999999999999999999999987432 23568999
Q ss_pred EcccHHHHHHHHHHHHHHhhhc-CceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchh
Q 006824 304 CAPTRELAHQIYLETKKFAKSH-GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEAD 382 (630)
Q Consensus 304 l~Ptr~La~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah 382 (630)
|+||++||.|+.++++.++... ++++..++||.+...+...+..+++|+|+||++|.+++.+....++++++|||||||
T Consensus 78 l~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad 157 (460)
T PRK11776 78 LCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEAD 157 (460)
T ss_pred EeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHH
Confidence 9999999999999999988754 789999999999999999999999999999999999999888889999999999999
Q ss_pred hhhcCCcHHHHHHHHhhcCCCCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCccccHHHHHH
Q 006824 383 RMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLE 462 (630)
Q Consensus 383 ~~~~~~~~~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~ 462 (630)
+|++++|...+..++..+++.+|+++||||+++.+..++..++.+|..+.+.... ....+.+.+..+... .|...+..
T Consensus 158 ~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~~-~k~~~l~~ 235 (460)
T PRK11776 158 RMLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH-DLPAIEQRFYEVSPD-ERLPALQR 235 (460)
T ss_pred HHhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC-CCCCeeEEEEEeCcH-HHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988775543 344577777766543 47777777
Q ss_pred hccCCCCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEE
Q 006824 463 KLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSV 542 (630)
Q Consensus 463 ~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~V 542 (630)
++... ..+++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++|
T Consensus 236 ll~~~-~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~V 314 (460)
T PRK11776 236 LLLHH-QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAV 314 (460)
T ss_pred HHHhc-CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeE
Confidence 77543 45689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEeccccHHHHHHHHHHHH
Q 006824 543 VNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLI 591 (630)
Q Consensus 543 I~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~~~~~l~~~l~ 591 (630)
|+|++|.++..|+||+||+||.| ..|.+++|+++.+...+..+.+.+.
T Consensus 315 I~~d~p~~~~~yiqR~GRtGR~g-~~G~ai~l~~~~e~~~~~~i~~~~~ 362 (460)
T PRK11776 315 INYELARDPEVHVHRIGRTGRAG-SKGLALSLVAPEEMQRANAIEDYLG 362 (460)
T ss_pred EEecCCCCHhHhhhhcccccCCC-CcceEEEEEchhHHHHHHHHHHHhC
Confidence 99999999999999999999999 6799999999999888877776654
No 21
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.6e-58 Score=512.06 Aligned_cols=360 Identities=40% Similarity=0.653 Sum_probs=327.9
Q ss_pred CCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEE
Q 006824 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVI 303 (630)
Q Consensus 224 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLi 303 (630)
..+|.+++|++.++++|.+.||..|+|+|.++||.+++|+|+|++||||||||++|++|++..+... ..+|++||
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~-----~~~~~~LI 79 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE-----LKAPQILV 79 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc-----cCCCeEEE
Confidence 3579999999999999999999999999999999999999999999999999999999999887432 24688999
Q ss_pred EcccHHHHHHHHHHHHHHhhhc-CceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchh
Q 006824 304 CAPTRELAHQIYLETKKFAKSH-GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEAD 382 (630)
Q Consensus 304 l~Ptr~La~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah 382 (630)
|+||++||.|+++.+.++.... ++.++.++||.+...+...+..+++|||+||++|.+++.+..+.++.+.+|||||||
T Consensus 80 L~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd 159 (629)
T PRK11634 80 LAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEAD 159 (629)
T ss_pred EeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHH
Confidence 9999999999999999998765 789999999999888888888899999999999999999888889999999999999
Q ss_pred hhhcCCcHHHHHHHHhhcCCCCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCccccHHHHHH
Q 006824 383 RMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLE 462 (630)
Q Consensus 383 ~~~~~~~~~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~ 462 (630)
.|++++|...+..++..++..+|+++||||+|+.+..++..++.+|..+.+.........+.+.+..+. ...|...|..
T Consensus 160 ~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~-~~~k~~~L~~ 238 (629)
T PRK11634 160 EMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVW-GMRKNEALVR 238 (629)
T ss_pred HHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEec-hhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999988887766556667777766554 3467777777
Q ss_pred hccCCCCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEE
Q 006824 463 KLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSV 542 (630)
Q Consensus 463 ~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~V 542 (630)
.+... ...++||||+++..++.++..|...++.+..+||++++.+|.++++.|++|+++|||||+++++|||+|+|++|
T Consensus 239 ~L~~~-~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~V 317 (629)
T PRK11634 239 FLEAE-DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLV 317 (629)
T ss_pred HHHhc-CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEE
Confidence 77543 34689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEeccccHHHHHHHHHHHH
Q 006824 543 VNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLI 591 (630)
Q Consensus 543 I~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~~~~~l~~~l~ 591 (630)
|+||+|.++..|+||+||+||.| +.|.+++|+++.+...+..|.+.+.
T Consensus 318 I~~d~P~~~e~yvqRiGRtGRaG-r~G~ai~~v~~~e~~~l~~ie~~~~ 365 (629)
T PRK11634 318 VNYDIPMDSESYVHRIGRTGRAG-RAGRALLFVENRERRLLRNIERTMK 365 (629)
T ss_pred EEeCCCCCHHHHHHHhccccCCC-CcceEEEEechHHHHHHHHHHHHhC
Confidence 99999999999999999999999 6799999999988888877766653
No 22
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=3.1e-59 Score=473.76 Aligned_cols=360 Identities=34% Similarity=0.538 Sum_probs=326.8
Q ss_pred CCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeE
Q 006824 222 RPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIG 301 (630)
Q Consensus 222 ~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~v 301 (630)
..+..|.+++|+.+.+++|+..+|..+|.+|+++||..++|+|+|+.|.||||||++|++|+|.+++.. ......|-.+
T Consensus 66 ~~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~-kWs~~DGlGa 144 (758)
T KOG0343|consen 66 TTIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRL-KWSPTDGLGA 144 (758)
T ss_pred hhhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHc-CCCCCCCcee
Confidence 345789999999999999999999999999999999999999999999999999999999999998764 3455678889
Q ss_pred EEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHc-cccccCceeEEEecc
Q 006824 302 VICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM-KALTMSRVTYLVLDE 380 (630)
Q Consensus 302 Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~-~~~~l~~i~~lVvDE 380 (630)
|||.|||+||.|+++.+.+.++..++.+.++.||........++ ++++|+||||++|+.++.. ..+..+++.++|+||
T Consensus 145 lIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi-~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDE 223 (758)
T KOG0343|consen 145 LIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERI-SQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDE 223 (758)
T ss_pred EEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhh-hcCCeEEechHHHHHHhhhcCCCCCCcceEEEecc
Confidence 99999999999999999999999999999999999876665554 4599999999999988865 456678999999999
Q ss_pred hhhhhcCCcHHHHHHHHhhcCCCCcEEEEeecccHHHHHHHHHHcCCCeEEEEccc--ccccccceEEEEEcCCccccHH
Q 006824 381 ADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEV--GMANEDITQVVHVIPSDAEKLP 458 (630)
Q Consensus 381 ah~~~~~~~~~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~--~~~~~~i~q~~~~~~~~~~k~~ 458 (630)
||+|++|||...+..|++.+++.+||++||||.+..+..+++--+.+|..+.+... ...+....|.+..++. ..|+.
T Consensus 224 ADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l-~~Ki~ 302 (758)
T KOG0343|consen 224 ADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPL-EDKID 302 (758)
T ss_pred HHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEeh-hhHHH
Confidence 99999999999999999999999999999999999999999999999999988743 3456678888888864 57999
Q ss_pred HHHHhccCCCCCCCEEEEccchhhHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCC
Q 006824 459 WLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK--GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDI 536 (630)
Q Consensus 459 ~l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~--~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi 536 (630)
.|..++.... ..++|||++|...+..++..|.+. |+++.++||.|+|..|..+...|...+..||+||++++||+|+
T Consensus 303 ~L~sFI~shl-k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDF 381 (758)
T KOG0343|consen 303 MLWSFIKSHL-KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDF 381 (758)
T ss_pred HHHHHHHhcc-ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCC
Confidence 9999998774 468999999999999999999876 8999999999999999999999999999999999999999999
Q ss_pred CCccEEEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEeccccH-HHHHHH
Q 006824 537 KSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA-RFAGEL 586 (630)
Q Consensus 537 ~~v~~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~-~~~~~l 586 (630)
|.|++||.||+|.+..+|+||+||+.|.+ ..|.+++++++.+. .++.+|
T Consensus 382 paVdwViQ~DCPedv~tYIHRvGRtAR~~-~~G~sll~L~psEeE~~l~~L 431 (758)
T KOG0343|consen 382 PAVDWVIQVDCPEDVDTYIHRVGRTARYK-ERGESLLMLTPSEEEAMLKKL 431 (758)
T ss_pred cccceEEEecCchhHHHHHHHhhhhhccc-CCCceEEEEcchhHHHHHHHH
Confidence 99999999999999999999999999998 67999999999884 433333
No 23
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=5.7e-58 Score=495.40 Aligned_cols=364 Identities=37% Similarity=0.608 Sum_probs=330.8
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEc
Q 006824 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICA 305 (630)
Q Consensus 226 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~ 305 (630)
+|+++++++.+++.|.+.||..|+++|.++||.++.|+|+++++|||+|||++|++|++.++...+. ....++++|||+
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~-~~~~~~~~lil~ 80 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPR-RKSGPPRILILT 80 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccc-cCCCCceEEEEC
Confidence 6899999999999999999999999999999999999999999999999999999999999876432 223457899999
Q ss_pred ccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhh
Q 006824 306 PTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (630)
Q Consensus 306 Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~ 385 (630)
||++||.|+++.+..++...++.+..++||.....+...+..+++|+|+||++|.+++....+.+.++.+|||||||+|+
T Consensus 81 Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l 160 (434)
T PRK11192 81 PTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRML 160 (434)
T ss_pred CcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHh
Confidence 99999999999999999988999999999999888877788889999999999999999888888999999999999999
Q ss_pred cCCcHHHHHHHHhhcCCCCcEEEEeecccH-HHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCccccHHHHHHhc
Q 006824 386 DLGFEPQIRSIVGQIRPDRQTLLFSATMPR-KVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKL 464 (630)
Q Consensus 386 ~~~~~~~v~~i~~~l~~~~q~l~~SAT~~~-~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l 464 (630)
+++|...+..+...++..+|+++||||++. .+..+...++.+|..+...........+.+.+........|...|..++
T Consensus 161 ~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~ 240 (434)
T PRK11192 161 DMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCHLL 240 (434)
T ss_pred CCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHHHHH
Confidence 999999999999999999999999999985 5788899999999988776665566677777777765566777777776
Q ss_pred cCCCCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEEEE
Q 006824 465 PGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN 544 (630)
Q Consensus 465 ~~~~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI~ 544 (630)
.. ...+++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++||+
T Consensus 241 ~~-~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~ 319 (434)
T PRK11192 241 KQ-PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVIN 319 (434)
T ss_pred hc-CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEE
Confidence 54 24578999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHHHHHhhhcccCCCCCeEEEEEeccccHHHHHHHHHHHHH
Q 006824 545 FDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIA 592 (630)
Q Consensus 545 ~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~~~~~l~~~l~~ 592 (630)
|++|.+...|+||+||+||.| ..|.+++|++..|...+..+.+.+..
T Consensus 320 ~d~p~s~~~yiqr~GR~gR~g-~~g~ai~l~~~~d~~~~~~i~~~~~~ 366 (434)
T PRK11192 320 FDMPRSADTYLHRIGRTGRAG-RKGTAISLVEAHDHLLLGKIERYIEE 366 (434)
T ss_pred ECCCCCHHHHhhcccccccCC-CCceEEEEecHHHHHHHHHHHHHHhc
Confidence 999999999999999999999 67999999999999988888876643
No 24
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-60 Score=455.20 Aligned_cols=368 Identities=30% Similarity=0.518 Sum_probs=340.6
Q ss_pred CCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEE
Q 006824 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVI 303 (630)
Q Consensus 224 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLi 303 (630)
-..|+++.|+..++..+...||.+|+|+|.++||.++.|+|++.-|..|+|||.+|++|++..+-.. .+.-.++|
T Consensus 84 G~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~-----~~~IQ~~i 158 (459)
T KOG0326|consen 84 GNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPK-----KNVIQAII 158 (459)
T ss_pred CccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCcc-----ccceeEEE
Confidence 3679999999999999999999999999999999999999999999999999999999999987432 34556899
Q ss_pred EcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhh
Q 006824 304 CAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR 383 (630)
Q Consensus 304 l~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~ 383 (630)
++|||+||.|+...++.+++..++.+.+.+||++..+++-++..+.+++|+||++++++.+++...++.+.++|+||||.
T Consensus 159 lVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADK 238 (459)
T KOG0326|consen 159 LVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADK 238 (459)
T ss_pred EeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999998999999999999999
Q ss_pred hhcCCcHHHHHHHHhhcCCCCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCccccHHHHHHh
Q 006824 384 MFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEK 463 (630)
Q Consensus 384 ~~~~~~~~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~ 463 (630)
+++..|...+..++..+++.+|++++|||+|-.+..+...++.+|..+..- .......+.|.+.++. +..|...|-.+
T Consensus 239 lLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM-~eLtl~GvtQyYafV~-e~qKvhCLntL 316 (459)
T KOG0326|consen 239 LLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLM-EELTLKGVTQYYAFVE-ERQKVHCLNTL 316 (459)
T ss_pred hhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehh-hhhhhcchhhheeeec-hhhhhhhHHHH
Confidence 999999999999999999999999999999999999999999999988653 3466778999988885 45677766665
Q ss_pred ccCCCCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEEE
Q 006824 464 LPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVV 543 (630)
Q Consensus 464 l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI 543 (630)
+.+. .-.+.|||||+...++.++..+.+.|++|..+|+.|-|.+|.++.+.|++|.++.||||+.+.||+||+.++.||
T Consensus 317 fskL-qINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVI 395 (459)
T KOG0326|consen 317 FSKL-QINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVI 395 (459)
T ss_pred HHHh-cccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEE
Confidence 5443 456889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCHHHHHHHhhhcccCCCCCeEEEEEeccccHHHHHHHHHHHHHcCCCCCHH
Q 006824 544 NFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSME 600 (630)
Q Consensus 544 ~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~~~~~l~~~l~~~~~~vp~~ 600 (630)
|||+|.++++|+||+||.||.| ..|.|+.|++-+|...+.+|.+.|...-.++|..
T Consensus 396 NFDfpk~aEtYLHRIGRsGRFG-hlGlAInLityedrf~L~~IE~eLGtEI~pip~~ 451 (459)
T KOG0326|consen 396 NFDFPKNAETYLHRIGRSGRFG-HLGLAINLITYEDRFNLYRIEQELGTEIKPIPSN 451 (459)
T ss_pred ecCCCCCHHHHHHHccCCccCC-CcceEEEEEehhhhhhHHHHHHHhccccccCCCc
Confidence 9999999999999999999999 6899999999999999999999997777777753
No 25
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3e-56 Score=486.25 Aligned_cols=379 Identities=39% Similarity=0.583 Sum_probs=333.2
Q ss_pred CCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCccc--ccCCC
Q 006824 222 RPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQ--KEEGP 299 (630)
Q Consensus 222 ~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~--~~~~~ 299 (630)
....+|.+++|++.++++|.+.||..|+|+|.++|+.+++|+|+|+++|||||||++|++|++..+...+... ....+
T Consensus 84 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~ 163 (475)
T PRK01297 84 EGKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEP 163 (475)
T ss_pred cCCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCc
Confidence 4456899999999999999999999999999999999999999999999999999999999999987654211 12368
Q ss_pred eEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHH-cCCcEEEeChHHHHHHHHccccccCceeEEEe
Q 006824 300 IGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELK-AGCEIVIATPGRLIDMLKMKALTMSRVTYLVL 378 (630)
Q Consensus 300 ~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~-~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVv 378 (630)
++|||+||++||.|+++.+..+....++.+..++||.....+...+. .+++|+|+||++|..++......++++++|||
T Consensus 164 ~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lVi 243 (475)
T PRK01297 164 RALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVL 243 (475)
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEe
Confidence 89999999999999999999999888999999999988877777765 45899999999999998888888999999999
Q ss_pred cchhhhhcCCcHHHHHHHHhhcCC--CCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCcccc
Q 006824 379 DEADRMFDLGFEPQIRSIVGQIRP--DRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEK 456 (630)
Q Consensus 379 DEah~~~~~~~~~~v~~i~~~l~~--~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k 456 (630)
||||++++++|...+..++..+.. .+|++++|||++..+..++..++.+|..+.+.........+.+.+..+. ...+
T Consensus 244 DEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~k 322 (475)
T PRK01297 244 DEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVA-GSDK 322 (475)
T ss_pred chHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEec-chhH
Confidence 999999999999999999998854 6799999999999999999999999988877665555556667666554 3456
Q ss_pred HHHHHHhccCCCCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCC
Q 006824 457 LPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDI 536 (630)
Q Consensus 457 ~~~l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi 536 (630)
...|..++... ...++||||+++..++.++..|...++.+..+||++++.+|.++++.|++|+++|||||+++++||||
T Consensus 323 ~~~l~~ll~~~-~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi 401 (475)
T PRK01297 323 YKLLYNLVTQN-PWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHI 401 (475)
T ss_pred HHHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcc
Confidence 66666666543 34689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEeccccHHHHHHHHHHHHHcC-CC-CCHHHHH
Q 006824 537 KSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAG-QN-VSMELMD 603 (630)
Q Consensus 537 ~~v~~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~~~~~l~~~l~~~~-~~-vp~~L~~ 603 (630)
+++++||+|++|.++..|+||+||+||.| ..|.+++|++..|..++..+.+.+.... .. .|.+|+.
T Consensus 402 ~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g-~~g~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T PRK01297 402 DGISHVINFTLPEDPDDYVHRIGRTGRAG-ASGVSISFAGEDDAFQLPEIEELLGRKISCEMPPAELLK 469 (475)
T ss_pred cCCCEEEEeCCCCCHHHHHHhhCccCCCC-CCceEEEEecHHHHHHHHHHHHHhCCCCcccCCcHHHhh
Confidence 99999999999999999999999999999 6799999999999888888888876653 34 4445554
No 26
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.3e-57 Score=449.33 Aligned_cols=366 Identities=33% Similarity=0.537 Sum_probs=327.9
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcc-cccCCCeEEE
Q 006824 225 KTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPEL-QKEEGPIGVI 303 (630)
Q Consensus 225 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~-~~~~~~~vLi 303 (630)
.+|++++|.+++++++.+.||.+||-+|..+||.++.|+|++..|.||||||.+|++|++..++..... ....+|.++|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 789999999999999999999999999999999999999999999999999999999999999887644 4566899999
Q ss_pred EcccHHHHHHHHHHHHHHhhhcC--ceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccc-cccCceeEEEecc
Q 006824 304 CAPTRELAHQIYLETKKFAKSHG--IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKA-LTMSRVTYLVLDE 380 (630)
Q Consensus 304 l~Ptr~La~Q~~~~~~~~~~~~~--~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~-~~l~~i~~lVvDE 380 (630)
|+||++||.|++..+.++....+ +++.-+....+.......+...++|+|+||+++..++..+. ..+..++++|+||
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDE 178 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDE 178 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEech
Confidence 99999999999999999877653 56666666666666656677789999999999999998876 5678899999999
Q ss_pred hhhhhcCCcHHHHHHHHhhcCCCCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccc-cceEEEEEcCCccccHHH
Q 006824 381 ADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANE-DITQVVHVIPSDAEKLPW 459 (630)
Q Consensus 381 ah~~~~~~~~~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~-~i~q~~~~~~~~~~k~~~ 459 (630)
||.++..||...+..+.+++++..|.++||||+...+..+-..+|++|+.+........+. .+.|....+ ++.+|+..
T Consensus 179 ADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~c-se~DKfll 257 (569)
T KOG0346|consen 179 ADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKC-SEEDKFLL 257 (569)
T ss_pred hhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEe-ccchhHHH
Confidence 9999999999999999999999999999999999999999999999999988876665544 455555555 47889999
Q ss_pred HHHhccCCCCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcC-----------
Q 006824 460 LLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD----------- 528 (630)
Q Consensus 460 l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~----------- 528 (630)
++.+++-.+-.|++|||+|+...|.++.-+|.+.|++.++++|.|+...|.-++++|+.|-+.++|||+
T Consensus 258 lyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee 337 (569)
T KOG0346|consen 258 LYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEE 337 (569)
T ss_pred HHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhcc
Confidence 888887666679999999999999999999999999999999999999999999999999999999999
Q ss_pred ------------------------CcccCCCCCCccEEEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEeccccHHHHH
Q 006824 529 ------------------------VAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAG 584 (630)
Q Consensus 529 ------------------------~~~~Gldi~~v~~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~~~~ 584 (630)
-++||||+..|.+|+|||+|.+...|+||+||++|.+ ++|++++|+.+.+.....
T Consensus 338 ~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~-n~GtalSfv~P~e~~g~~ 416 (569)
T KOG0346|consen 338 VKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGN-NKGTALSFVSPKEEFGKE 416 (569)
T ss_pred ccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCC-CCCceEEEecchHHhhhh
Confidence 2459999999999999999999999999999999998 689999999998877556
Q ss_pred HHHHHHHH
Q 006824 585 ELVNSLIA 592 (630)
Q Consensus 585 ~l~~~l~~ 592 (630)
.|...+..
T Consensus 417 ~le~~~~d 424 (569)
T KOG0346|consen 417 SLESILKD 424 (569)
T ss_pred HHHHHHhh
Confidence 66666655
No 27
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.3e-57 Score=457.73 Aligned_cols=366 Identities=36% Similarity=0.554 Sum_probs=315.0
Q ss_pred CCCCCCcccCCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCC-cccccCC
Q 006824 221 PRPVKTFEDCGFSTQLMHAISK-QGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQP-ELQKEEG 298 (630)
Q Consensus 221 p~p~~~~~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~-~~~~~~~ 298 (630)
|-.-..|..+||.+.+...|.. +++..||.+|+++||.+++|+|+++.++||||||++|++|++.++.... .+.+..|
T Consensus 132 ~fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G 211 (708)
T KOG0348|consen 132 PFTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDG 211 (708)
T ss_pred ccccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCC
Confidence 4456789999999999999975 5999999999999999999999999999999999999999999998765 4567789
Q ss_pred CeEEEEcccHHHHHHHHHHHHHHhhhcCc-eEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHc-cccccCceeEE
Q 006824 299 PIGVICAPTRELAHQIYLETKKFAKSHGI-RVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM-KALTMSRVTYL 376 (630)
Q Consensus 299 ~~vLil~Ptr~La~Q~~~~~~~~~~~~~~-~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~-~~~~l~~i~~l 376 (630)
+.+|||+||||||.|+++.+.++.+.+.. ..+.+.||.++.....+|++|++|+|+||++|.+.|.+ ..+.++++.+|
T Consensus 212 ~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwl 291 (708)
T KOG0348|consen 212 PYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWL 291 (708)
T ss_pred ceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEE
Confidence 99999999999999999999999987653 34567889888888899999999999999999999986 45678899999
Q ss_pred EecchhhhhcCCcHHHHHHHHhhcC-------------CCCcEEEEeecccHHHHHHHHHHcCCCeEEEEccc-------
Q 006824 377 VLDEADRMFDLGFEPQIRSIVGQIR-------------PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEV------- 436 (630)
Q Consensus 377 VvDEah~~~~~~~~~~v~~i~~~l~-------------~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~------- 436 (630)
|+||||+++++||...+..|++.+. +.+|.+++|||++..+..|+..-+.+|+.+.....
T Consensus 292 VlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~ 371 (708)
T KOG0348|consen 292 VLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPK 371 (708)
T ss_pred EecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcc
Confidence 9999999999999999999988772 24799999999999999999999999988872110
Q ss_pred ------------------ccccccceEEEEEcCCccccHHHHHHhccCCC---CCCCEEEEccchhhHHHHHHHHHhC--
Q 006824 437 ------------------GMANEDITQVVHVIPSDAEKLPWLLEKLPGMI---DDGDVLVFASKKTTVDEIESQLAQK-- 493 (630)
Q Consensus 437 ------------------~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~---~~~~iLIF~~s~~~~~~l~~~L~~~-- 493 (630)
........|.+.+++. .-++..|..+|.... ...++|||+.+...++.=+..|...
T Consensus 372 ~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPp-KLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~ 450 (708)
T KOG0348|consen 372 DKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPP-KLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALL 450 (708)
T ss_pred hhhhhhcCCcccccccccccCcHHhhhceEecCC-chhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhh
Confidence 1223445677777754 356666666665432 3458999999999998877777642
Q ss_pred --------------------CCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEEEEeCCCCCHHH
Q 006824 494 --------------------GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDM 553 (630)
Q Consensus 494 --------------------~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~~~~~ 553 (630)
+.++..+||+|+|.+|..+++.|...+-.||+||++++||+|+|.|++||.||+|.++.+
T Consensus 451 ~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~ad 530 (708)
T KOG0348|consen 451 SHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTAD 530 (708)
T ss_pred cccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHH
Confidence 456999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcccCCCCCeEEEEEeccccHHHHHHHHH
Q 006824 554 HVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVN 588 (630)
Q Consensus 554 y~QriGR~gR~g~~~g~~~~l~~~~d~~~~~~l~~ 588 (630)
|+||+||+.|+| ..|.++.|+.+.+..++..+..
T Consensus 531 ylHRvGRTARaG-~kG~alLfL~P~Eaey~~~l~~ 564 (708)
T KOG0348|consen 531 YLHRVGRTARAG-EKGEALLFLLPSEAEYVNYLKK 564 (708)
T ss_pred HHHHhhhhhhcc-CCCceEEEecccHHHHHHHHHh
Confidence 999999999999 5799999999999886554433
No 28
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=3.4e-55 Score=470.17 Aligned_cols=369 Identities=33% Similarity=0.546 Sum_probs=328.4
Q ss_pred CCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEE
Q 006824 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVI 303 (630)
Q Consensus 224 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLi 303 (630)
..+|.++++++.+.+++.+.||..|+|+|.++|+.+++|+|+++++|||||||++|++|++.++.. ..+++++||
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~-----~~~~~~~li 101 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDY-----DLNACQALI 101 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcC-----CCCCceEEE
Confidence 578999999999999999999999999999999999999999999999999999999999988742 124678999
Q ss_pred EcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhh
Q 006824 304 CAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR 383 (630)
Q Consensus 304 l~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~ 383 (630)
|+||++||.|+.+.+..++...++.+..++|+.....++..+..+++|+|+||++|.+++......++++++|||||||+
T Consensus 102 l~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~ 181 (401)
T PTZ00424 102 LAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADE 181 (401)
T ss_pred ECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHH
Confidence 99999999999999999988778888889999888888888888899999999999999988888899999999999999
Q ss_pred hhcCCcHHHHHHHHhhcCCCCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCccccHHHHHHh
Q 006824 384 MFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEK 463 (630)
Q Consensus 384 ~~~~~~~~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~ 463 (630)
+.+.+|...+..++..+++..|++++|||+++.+..+...++.+|..+.+.........+.+.+..+.....+...+...
T Consensus 182 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 261 (401)
T PTZ00424 182 MLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLCDL 261 (401)
T ss_pred HHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988776655555566677766665444455555555
Q ss_pred ccCCCCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEEE
Q 006824 464 LPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVV 543 (630)
Q Consensus 464 l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI 543 (630)
+... ...++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++||
T Consensus 262 ~~~~-~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI 340 (401)
T PTZ00424 262 YETL-TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVI 340 (401)
T ss_pred HHhc-CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEE
Confidence 4432 356899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCHHHHHHHhhhcccCCCCCeEEEEEeccccHHHHHHHHHHHHHcCCCCCH
Q 006824 544 NFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSM 599 (630)
Q Consensus 544 ~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~~~~~l~~~l~~~~~~vp~ 599 (630)
+|++|.++..|+||+||+||.| +.|.|++|+++.+...+..+.+.+.......+.
T Consensus 341 ~~~~p~s~~~y~qr~GRagR~g-~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~~ 395 (401)
T PTZ00424 341 NYDLPASPENYIHRIGRSGRFG-RKGVAINFVTPDDIEQLKEIERHYNTQIEEMPM 395 (401)
T ss_pred EECCCCCHHHEeecccccccCC-CCceEEEEEcHHHHHHHHHHHHHHCCcccccCc
Confidence 9999999999999999999999 679999999999998888887777554444443
No 29
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.8e-56 Score=456.97 Aligned_cols=401 Identities=33% Similarity=0.529 Sum_probs=357.7
Q ss_pred HHHHHHHcCceeccCCCCCCCCCccc----CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHH
Q 006824 204 VMEYKKSLAIRVSGFDVPRPVKTFED----CGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAF 279 (630)
Q Consensus 204 ~~~~~~~~~~~~~~~~~p~p~~~~~~----~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~ 279 (630)
....|+.+.+.+.|..+|+|+.+|.+ +.+...+++.+...+|..|+|+|++|+|.++.+++++.|+|||||||++|
T Consensus 111 ~~~~Rk~~k~~v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf 190 (593)
T KOG0344|consen 111 LLGIRKSNKINVDGFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAF 190 (593)
T ss_pred cccchhcceeeccCCCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhh
Confidence 44568888999999999999999997 67899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHh--hhcCceEEEEECCCChHHH-HHHHHcCCcEEEeCh
Q 006824 280 VLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA--KSHGIRVSAVYGGMSKLDQ-FKELKAGCEIVIATP 356 (630)
Q Consensus 280 ~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~--~~~~~~~~~~~gg~~~~~~-~~~l~~~~dIiv~Tp 356 (630)
++|++.++..........|-+++|+.|||+||.|++.++.++. ...++++..+......... .......++|+++||
T Consensus 191 ~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP 270 (593)
T KOG0344|consen 191 NLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTP 270 (593)
T ss_pred hhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCH
Confidence 9999999976543233557889999999999999999999998 5445554443333221111 111223489999999
Q ss_pred HHHHHHHHccc--cccCceeEEEecchhhhhcC-CcHHHHHHHHhhcC-CCCcEEEEeecccHHHHHHHHHHcCCCeEEE
Q 006824 357 GRLIDMLKMKA--LTMSRVTYLVLDEADRMFDL-GFEPQIRSIVGQIR-PDRQTLLFSATMPRKVEKLAREILSDPVRVT 432 (630)
Q Consensus 357 ~~L~~~l~~~~--~~l~~i~~lVvDEah~~~~~-~~~~~v~~i~~~l~-~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~ 432 (630)
.++...+.... +.++.+.++|+||||++++. .|..|+..|+..+. ++..+-+||||++..+++++.....++..+.
T Consensus 271 ~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vi 350 (593)
T KOG0344|consen 271 MRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVI 350 (593)
T ss_pred HHHHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEE
Confidence 99999998765 67899999999999999998 89999999988774 6677889999999999999999999999999
Q ss_pred EcccccccccceEEEEEcCCccccHHHHHHhccCCCCCCCEEEEccchhhHHHHHHHH-HhCCCcEEEEeCCCCHHHHHH
Q 006824 433 VGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQL-AQKGFKAAALHGDKDQASRME 511 (630)
Q Consensus 433 ~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L-~~~~~~~~~ihg~~~~~~r~~ 511 (630)
++....+...+.|....+.+...|+..+.+.+.... ..++|||+.++..|..|...| .-.++.+.+|||..++.+|.+
T Consensus 351 vg~~~sa~~~V~QelvF~gse~~K~lA~rq~v~~g~-~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde 429 (593)
T KOG0344|consen 351 VGLRNSANETVDQELVFCGSEKGKLLALRQLVASGF-KPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDE 429 (593)
T ss_pred EecchhHhhhhhhhheeeecchhHHHHHHHHHhccC-CCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHH
Confidence 999999999999999999999999999999887763 469999999999999999999 667899999999999999999
Q ss_pred HHHHhhcCCceEEEEcCCcccCCCCCCccEEEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEeccccHHHHHHHHHHHH
Q 006824 512 ILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLI 591 (630)
Q Consensus 512 ~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~~~~~l~~~l~ 591 (630)
+++.|+.|+++|||||++++||+|+.++++|||||.|.+...|+||+||+||+| +.|.||+||+..|...+.-+++.++
T Consensus 430 ~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag-~~g~Aitfytd~d~~~ir~iae~~~ 508 (593)
T KOG0344|consen 430 TMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAG-RSGKAITFYTDQDMPRIRSIAEVME 508 (593)
T ss_pred HHHHHhccCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCC-CCcceEEEeccccchhhhhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999 6899999999999999999999999
Q ss_pred HcCCCCCHHHHHHHH
Q 006824 592 AAGQNVSMELMDLAM 606 (630)
Q Consensus 592 ~~~~~vp~~L~~la~ 606 (630)
.+|.+||++++.+.+
T Consensus 509 ~sG~evpe~~m~~~k 523 (593)
T KOG0344|consen 509 QSGCEVPEKIMGIKK 523 (593)
T ss_pred HcCCcchHHHHhhhh
Confidence 999999999999985
No 30
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3e-56 Score=452.03 Aligned_cols=370 Identities=33% Similarity=0.514 Sum_probs=314.9
Q ss_pred CCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcC-CCEEEEeCCCChHHHHHHHHHHHHHhcCCccc-----
Q 006824 221 PRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSG-RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQ----- 294 (630)
Q Consensus 221 p~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g-~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~----- 294 (630)
+-.+..|.+++||..++++|...||..||+||...+|.+..| .|+++.|.||||||++|-+|++..+....+..
T Consensus 177 ~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~ 256 (731)
T KOG0347|consen 177 KVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSN 256 (731)
T ss_pred ccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhh
Confidence 556788999999999999999999999999999999999999 79999999999999999999999655433211
Q ss_pred ---ccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHcccc---
Q 006824 295 ---KEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKAL--- 368 (630)
Q Consensus 295 ---~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~--- 368 (630)
....|.+||++|||+||.|+.+-+...+...++++..++||.....|-+-|...++|+|||||+|+.++.....
T Consensus 257 ~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~ 336 (731)
T KOG0347|consen 257 TSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLG 336 (731)
T ss_pred HHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhh
Confidence 12244599999999999999999999999999999999999999999888988999999999999999987655
Q ss_pred ccCceeEEEecchhhhhcCCcHHHHHHHHhhcC-----CCCcEEEEeecccH---------------------HHHHHHH
Q 006824 369 TMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIR-----PDRQTLLFSATMPR---------------------KVEKLAR 422 (630)
Q Consensus 369 ~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~-----~~~q~l~~SAT~~~---------------------~~~~l~~ 422 (630)
+++.+.++||||+|||++.|+-..+..++.+++ ..+|+++||||++- .++.|+.
T Consensus 337 ~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk 416 (731)
T KOG0347|consen 337 NFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMK 416 (731)
T ss_pred hhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHH
Confidence 467789999999999999998888888888775 57899999999852 2344444
Q ss_pred HH--cCCCeEEEEcccccccccceEEEEEcCCccccHHHHHHhccCCCCCCCEEEEccchhhHHHHHHHHHhCCCcEEEE
Q 006824 423 EI--LSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAAL 500 (630)
Q Consensus 423 ~~--~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~i 500 (630)
.+ .++|..+...........+......| ....|-.+|+-+|.. ..|++|||||++..+.+|+-+|...++....|
T Consensus 417 ~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C-~~~eKD~ylyYfl~r--yPGrTlVF~NsId~vKRLt~~L~~L~i~p~~L 493 (731)
T KOG0347|consen 417 KIGFRGKPKIIDLTPQSATASTLTESLIEC-PPLEKDLYLYYFLTR--YPGRTLVFCNSIDCVKRLTVLLNNLDIPPLPL 493 (731)
T ss_pred HhCccCCCeeEecCcchhHHHHHHHHhhcC-CccccceeEEEEEee--cCCceEEEechHHHHHHHHHHHhhcCCCCchh
Confidence 32 34565555444333333333333333 233455555555544 48999999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEEEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEeccccH
Q 006824 501 HGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (630)
Q Consensus 501 hg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~ 580 (630)
|..|.|.+|.+.++.|++....|||||++++||||||+|.|||+|-.|.+.+.|+||.||+.|++ ..|..+.|+.|.+.
T Consensus 494 HA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~-~~Gvsvml~~P~e~ 572 (731)
T KOG0347|consen 494 HASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARAN-SEGVSVMLCGPQEV 572 (731)
T ss_pred hHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEeccccccccc-CCCeEEEEeChHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999 67999999999999
Q ss_pred HHHHHHHHHHHHcC
Q 006824 581 RFAGELVNSLIAAG 594 (630)
Q Consensus 581 ~~~~~l~~~l~~~~ 594 (630)
..+.+|..-|....
T Consensus 573 ~~~~KL~ktL~k~~ 586 (731)
T KOG0347|consen 573 GPLKKLCKTLKKKE 586 (731)
T ss_pred HHHHHHHHHHhhcc
Confidence 99999999987754
No 31
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-52 Score=408.32 Aligned_cols=372 Identities=31% Similarity=0.492 Sum_probs=327.8
Q ss_pred CCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcC--CCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCC
Q 006824 222 RPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGP 299 (630)
Q Consensus 222 ~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g--~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~ 299 (630)
-.+++|++++|+++++++|..++|.+|+.+|..++|.++.. +++|.++..|+|||.+|.|.||.++--. ..-|
T Consensus 87 yS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~-----~~~P 161 (477)
T KOG0332|consen 87 YSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPD-----VVVP 161 (477)
T ss_pred cccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcc-----ccCC
Confidence 45789999999999999999999999999999999999987 7999999999999999999999987332 2367
Q ss_pred eEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHc-cccccCceeEEEe
Q 006824 300 IGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM-KALTMSRVTYLVL 378 (630)
Q Consensus 300 ~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~-~~~~l~~i~~lVv 378 (630)
.++-|+|||+||.|+.+.+.+.++..+++..+...|.... .-..+ ..+|+|+||+.+.+++.+ ..+.+..+.++|+
T Consensus 162 Q~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~-rG~~i--~eqIviGTPGtv~Dlm~klk~id~~kikvfVl 238 (477)
T KOG0332|consen 162 QCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAK-RGNKL--TEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVL 238 (477)
T ss_pred CceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccc-cCCcc--hhheeeCCCccHHHHHHHHHhhChhhceEEEe
Confidence 8899999999999999999999988888887777665211 10111 157999999999999887 6777889999999
Q ss_pred cchhhhhcC-CcHHHHHHHHhhcCCCCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCccccH
Q 006824 379 DEADRMFDL-GFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKL 457 (630)
Q Consensus 379 DEah~~~~~-~~~~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~ 457 (630)
||||.|++. ||.++-..|...++++.|+++||||+...+..++..+..++..+.+.........|.|.+..|.....|+
T Consensus 239 DEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~ 318 (477)
T KOG0332|consen 239 DEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDDKY 318 (477)
T ss_pred cchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhhHH
Confidence 999999975 6999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCC
Q 006824 458 PWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIK 537 (630)
Q Consensus 458 ~~l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~ 537 (630)
..|.+ |.....-|+.||||.++..+..++..|...|..+.++||.|...+|..++.+|+.|+.+|||+|++++||+|++
T Consensus 319 ~~l~~-lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~ 397 (477)
T KOG0332|consen 319 QALVN-LYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVA 397 (477)
T ss_pred HHHHH-HHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccc
Confidence 99999 44555668999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEeCCCC------CHHHHHHHhhhcccCCCCCeEEEEEeccc-cHHHHHHHHHHHHHcC-CCCCHHHHH
Q 006824 538 SIKSVVNFDIAR------DMDMHVHRIGRTGRAGDKDGTAYTLVTQK-EARFAGELVNSLIAAG-QNVSMELMD 603 (630)
Q Consensus 538 ~v~~VI~~~~p~------~~~~y~QriGR~gR~g~~~g~~~~l~~~~-d~~~~~~l~~~l~~~~-~~vp~~L~~ 603 (630)
.|+.|||||+|. ++++|+|||||+||.| +.|.++-|+... ....+..|.++....- ...|..+.+
T Consensus 398 qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFG-kkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~~~~d~~E 470 (477)
T KOG0332|consen 398 QVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFG-KKGLAINLVDDKDSMNIMNKIQKHFNMKIKRLDPDDLDE 470 (477)
T ss_pred eEEEEEecCCccccCCCCCHHHHHHHhccccccc-ccceEEEeecccCcHHHHHHHHHHHhhcceecCCccHHH
Confidence 999999999996 6889999999999999 789999988765 4566677877774433 444444443
No 32
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4e-53 Score=415.84 Aligned_cols=368 Identities=33% Similarity=0.547 Sum_probs=337.7
Q ss_pred CCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEE
Q 006824 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVI 303 (630)
Q Consensus 224 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLi 303 (630)
+.+|++++|++.|++.+...||.+|+.+|+.||..+..|.|+++.+++|+|||.+|+++++.++-. ......+|+
T Consensus 25 vdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~-----~~ke~qali 99 (397)
T KOG0327|consen 25 VDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDM-----SVKETQALI 99 (397)
T ss_pred hhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCc-----chHHHHHHH
Confidence 459999999999999999999999999999999999999999999999999999999999988621 122445899
Q ss_pred EcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHH-cCCcEEEeChHHHHHHHHccccccCceeEEEecchh
Q 006824 304 CAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELK-AGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEAD 382 (630)
Q Consensus 304 l~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~-~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah 382 (630)
++|||+||.|+......++...+.++..+.||.....+...+. .+++|+++||+++.+++....+....++++|+||||
T Consensus 100 laPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaD 179 (397)
T KOG0327|consen 100 LAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEAD 179 (397)
T ss_pred hcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchH
Confidence 9999999999999999999888999999999998885555544 468999999999999999998888889999999999
Q ss_pred hhhcCCcHHHHHHHHhhcCCCCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCccccHHHHHH
Q 006824 383 RMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLE 462 (630)
Q Consensus 383 ~~~~~~~~~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~ 462 (630)
.|+..+|..++..++++++++.|++++|||+|..+..+.+.++.+|+.+.+...+.....+.|++..+..+. |+..|..
T Consensus 180 EmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~-k~~~l~d 258 (397)
T KOG0327|consen 180 EMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEE-KLDTLCD 258 (397)
T ss_pred hhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccc-cccHHHH
Confidence 999999999999999999999999999999999999999999999999999998888999999998886654 8888888
Q ss_pred hccCCCCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEE
Q 006824 463 KLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSV 542 (630)
Q Consensus 463 ~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~V 542 (630)
+.. .-.+.+||||+...+..+...|...++.+.++||.|.+.+|..++..|+.|..+|||.|+.++||+|+..+..|
T Consensus 259 l~~---~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slv 335 (397)
T KOG0327|consen 259 LYR---RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLV 335 (397)
T ss_pred HHH---hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhccee
Confidence 877 45688999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEeccccHHHHHHHHHHHHHcCCCCCHHH
Q 006824 543 VNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMEL 601 (630)
Q Consensus 543 I~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~~~~~l~~~l~~~~~~vp~~L 601 (630)
|||++|.+...|+||+||+||.| .+|.++.|++..|...+.++.+++.-.-.+.|...
T Consensus 336 inydlP~~~~~yihR~gr~gr~g-rkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~~~ 393 (397)
T KOG0327|consen 336 VNYDLPARKENYIHRIGRAGRFG-RKGVAINFVTEEDVRDLKDIEKFYNTPIEELPSNF 393 (397)
T ss_pred eeeccccchhhhhhhcccccccC-CCceeeeeehHhhHHHHHhHHHhcCCcceecccch
Confidence 99999999999999999999999 67999999999999999999887765555555443
No 33
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7e-54 Score=422.82 Aligned_cols=362 Identities=38% Similarity=0.594 Sum_probs=334.4
Q ss_pred CCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEE
Q 006824 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVI 303 (630)
Q Consensus 224 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLi 303 (630)
.-+|..+||...++++|.+.||..|||+|+..+|.++.++|++..+.||||||.+|++||+.++.... ..|.++||
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s----~~g~Rali 95 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS----QTGLRALI 95 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc----ccccceee
Confidence 56899999999999999999999999999999999999999999999999999999999999986542 45788999
Q ss_pred EcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhh
Q 006824 304 CAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR 383 (630)
Q Consensus 304 l~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~ 383 (630)
+.|||+|+.|..+..+.+++..++++++++||.+..+++..+..+.|||+|||+++..+.-.-.+.|+++.|||+||||+
T Consensus 96 lsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadr 175 (529)
T KOG0337|consen 96 LSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADR 175 (529)
T ss_pred ccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhH
Confidence 99999999999999999999999999999999999999999999999999999999887765567899999999999999
Q ss_pred hhcCCcHHHHHHHHhhcCCCCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCccccHHHHHHh
Q 006824 384 MFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEK 463 (630)
Q Consensus 384 ~~~~~~~~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~ 463 (630)
++.+||.+++..++..++..+|+++||||+|+.+..+++.-+.+|+.+...............+..+ ....|...|+..
T Consensus 176 lfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~-~~a~K~aaLl~i 254 (529)
T KOG0337|consen 176 LFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRV-RKAEKEAALLSI 254 (529)
T ss_pred HHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeee-ccHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999888655555555555555555 456899999999
Q ss_pred ccCCCCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEEE
Q 006824 464 LPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVV 543 (630)
Q Consensus 464 l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI 543 (630)
+.....+.+++|||.+..+++.+...|...|+.+..++|.+++..|...+..|..++..+||.|++++||+|||....||
T Consensus 255 l~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvi 334 (529)
T KOG0337|consen 255 LGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVI 334 (529)
T ss_pred HhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccc
Confidence 98887777899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCHHHHHHHhhhcccCCCCCeEEEEEeccccHHHHHHHHHHHH
Q 006824 544 NFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLI 591 (630)
Q Consensus 544 ~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~~~~~l~~~l~ 591 (630)
|||.|.....|+||+||+.|+| ..|.+|.|+.+.+..++-+|--.|.
T Consensus 335 nyd~p~~~klFvhRVgr~arag-rtg~aYs~V~~~~~~yl~DL~lflg 381 (529)
T KOG0337|consen 335 NYDFPPDDKLFVHRVGRVARAG-RTGRAYSLVASTDDPYLLDLQLFLG 381 (529)
T ss_pred cccCCCCCceEEEEecchhhcc-ccceEEEEEecccchhhhhhhhhcC
Confidence 9999999999999999999999 6899999999999888888766653
No 34
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=7.3e-52 Score=426.10 Aligned_cols=356 Identities=31% Similarity=0.457 Sum_probs=323.6
Q ss_pred cCCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCccccc
Q 006824 217 GFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKE 296 (630)
Q Consensus 217 ~~~~p~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~ 296 (630)
+.-.|.-...|+++.|...++..|+..+|..||++|..|||.++++-|+|+++..|+|||++|.+.++..+.- ..
T Consensus 17 ~DV~~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~-----~~ 91 (980)
T KOG4284|consen 17 IDVQSNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDS-----RS 91 (980)
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCc-----cc
Confidence 3445777789999999999999999999999999999999999999999999999999999998888776532 34
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHHhhhc-CceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeE
Q 006824 297 EGPIGVICAPTRELAHQIYLETKKFAKSH-GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTY 375 (630)
Q Consensus 297 ~~~~vLil~Ptr~La~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~ 375 (630)
+.+..+||+|||++|.|+.+.+.+++..+ |+++.++.||+.......+++. |+|+|+||+++..+++.+.++.+.+.+
T Consensus 92 ~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~-~rIvIGtPGRi~qL~el~~~n~s~vrl 170 (980)
T KOG4284|consen 92 SHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQ-TRIVIGTPGRIAQLVELGAMNMSHVRL 170 (980)
T ss_pred CcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhh-ceEEecCchHHHHHHHhcCCCccceeE
Confidence 57889999999999999999999998854 8999999999998877777765 899999999999999999999999999
Q ss_pred EEecchhhhhc-CCcHHHHHHHHhhcCCCCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCcc
Q 006824 376 LVLDEADRMFD-LGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDA 454 (630)
Q Consensus 376 lVvDEah~~~~-~~~~~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~ 454 (630)
+|+||||.+++ ..|...+..|++.++..+|+++||||.|.++..++..++++|..+.........-.|.|++...++..
T Consensus 171 fVLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~n 250 (980)
T KOG4284|consen 171 FVLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPN 250 (980)
T ss_pred EEeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCc
Confidence 99999999998 45999999999999999999999999999999999999999999988888888889999998877642
Q ss_pred -------ccHHHHHHhccCCCCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEc
Q 006824 455 -------EKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIAT 527 (630)
Q Consensus 455 -------~k~~~l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT 527 (630)
.|+..|..++... +-.+.||||+....|+-++++|...|+.|.+|+|.|+|.+|..++..+++-.++|||+|
T Consensus 251 nsveemrlklq~L~~vf~~i-py~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsT 329 (980)
T KOG4284|consen 251 NSVEEMRLKLQKLTHVFKSI-PYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVST 329 (980)
T ss_pred chHHHHHHHHHHHHHHHhhC-chHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEec
Confidence 2666666666654 34578999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCCCccEEEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEeccccH
Q 006824 528 DVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (630)
Q Consensus 528 ~~~~~Gldi~~v~~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~ 580 (630)
+..+||||-+.|+.|||.|+|.+..+|.|||||+||.| ..|.+++|+.....
T Consensus 330 DLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG-~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 330 DLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFG-AHGAAVTLLEDERE 381 (980)
T ss_pred chhhccCCccccceEEecCCCcchHHHHHHhhhccccc-ccceeEEEeccchh
Confidence 99999999999999999999999999999999999999 46999999986543
No 35
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=1.5e-49 Score=448.80 Aligned_cols=345 Identities=19% Similarity=0.261 Sum_probs=274.7
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHH
Q 006824 231 GFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTREL 310 (630)
Q Consensus 231 ~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~L 310 (630)
.+++.+.+.|.+.||.+|+++|.+++|.+++|+|+++++|||||||++|++|++..+... .++++|||+|||+|
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~------~~~~aL~l~PtraL 93 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD------PRATALYLAPTKAL 93 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC------CCcEEEEEcChHHH
Confidence 488999999999999999999999999999999999999999999999999999998653 26789999999999
Q ss_pred HHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHcc----ccccCceeEEEecchhhhhc
Q 006824 311 AHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK----ALTMSRVTYLVLDEADRMFD 386 (630)
Q Consensus 311 a~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~----~~~l~~i~~lVvDEah~~~~ 386 (630)
|.|+...++++. ..++++..+.|+.+ ..+...+..+++|||+||++|...+... ...++++++|||||||.|.+
T Consensus 94 a~q~~~~l~~l~-~~~i~v~~~~Gdt~-~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g 171 (742)
T TIGR03817 94 AADQLRAVRELT-LRGVRPATYDGDTP-TEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG 171 (742)
T ss_pred HHHHHHHHHHhc-cCCeEEEEEeCCCC-HHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC
Confidence 999999999987 34778777666655 4555667778999999999987533211 12378999999999999876
Q ss_pred CCcHHHHHHHHhh-------cCCCCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCC-------
Q 006824 387 LGFEPQIRSIVGQ-------IRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPS------- 452 (630)
Q Consensus 387 ~~~~~~v~~i~~~-------l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~------- 452 (630)
.|+.++..++.. ++..+|++++|||+++..+ ++..++..|..+. ...+... ...+...+.+.
T Consensus 172 -~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~i-~~~~~~~-~~~~~~~~~p~~~~~~~~ 247 (742)
T TIGR03817 172 -VFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVAV-TEDGSPR-GARTVALWEPPLTELTGE 247 (742)
T ss_pred -ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEEE-CCCCCCc-CceEEEEecCCccccccc
Confidence 377776655544 3567899999999998754 6778888886543 2222211 11222221111
Q ss_pred ---------ccccHHHHHHhccCCCCCCCEEEEccchhhHHHHHHHHHhC--------CCcEEEEeCCCCHHHHHHHHHH
Q 006824 453 ---------DAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK--------GFKAAALHGDKDQASRMEILQK 515 (630)
Q Consensus 453 ---------~~~k~~~l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~--------~~~~~~ihg~~~~~~r~~~~~~ 515 (630)
...+...+..++. ...++||||+|+..++.++..|... +..+..+||++++.+|.++++.
T Consensus 248 ~~~~~r~~~~~~~~~~l~~l~~---~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~ 324 (742)
T TIGR03817 248 NGAPVRRSASAEAADLLADLVA---EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERA 324 (742)
T ss_pred cccccccchHHHHHHHHHHHHH---CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHH
Confidence 0123333444443 2569999999999999999998763 5678999999999999999999
Q ss_pred hhcCCceEEEEcCCcccCCCCCCccEEEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEec--cccHHHHHHHHHHHH
Q 006824 516 FKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVT--QKEARFAGELVNSLI 591 (630)
Q Consensus 516 F~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~--~~d~~~~~~l~~~l~ 591 (630)
|++|++++||||+++++||||+++++||+|++|.++..|+||+||+||.| +.|.++++.+ +.|..++..+...+.
T Consensus 325 f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G-~~g~ai~v~~~~~~d~~~~~~~~~~~~ 401 (742)
T TIGR03817 325 LRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRG-QGALVVLVARDDPLDTYLVHHPEALFD 401 (742)
T ss_pred HHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCC-CCcEEEEEeCCChHHHHHHhCHHHHhc
Confidence 99999999999999999999999999999999999999999999999999 6799999886 445555555544444
No 36
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.2e-49 Score=395.84 Aligned_cols=354 Identities=30% Similarity=0.464 Sum_probs=288.2
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHH---------cCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEE
Q 006824 232 FSTQLMHAISKQGYEKPTSIQCQALPIIL---------SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGV 302 (630)
Q Consensus 232 l~~~l~~~l~~~~~~~~~~~Q~~~i~~il---------~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vL 302 (630)
|...+.+.+.++++..+.|+|.+.+|+++ ..+|+++.||||||||++|.+|++..+...+ -+.-++|
T Consensus 144 lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~----v~~LRav 219 (620)
T KOG0350|consen 144 LEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRP----VKRLRAV 219 (620)
T ss_pred HHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCC----ccceEEE
Confidence 33445677899999999999999999996 3589999999999999999999999887653 2357799
Q ss_pred EEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHHcC-----CcEEEeChHHHHHHHH-ccccccCceeEE
Q 006824 303 ICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAG-----CEIVIATPGRLIDMLK-MKALTMSRVTYL 376 (630)
Q Consensus 303 il~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~-----~dIiv~Tp~~L~~~l~-~~~~~l~~i~~l 376 (630)
||+||++|+.|++..+.+++...|+.|+.+.|..+.......|.+. .||+|+||++|.+++. ...+.|+.+.|+
T Consensus 220 VivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfL 299 (620)
T KOG0350|consen 220 VIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFL 299 (620)
T ss_pred EEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEE
Confidence 9999999999999999999999999988888888887777777653 4899999999999998 467889999999
Q ss_pred EecchhhhhcCCcHHHHHHHHhhcCC----------------------------------CCcEEEEeecccHHHHHHHH
Q 006824 377 VLDEADRMFDLGFEPQIRSIVGQIRP----------------------------------DRQTLLFSATMPRKVEKLAR 422 (630)
Q Consensus 377 VvDEah~~~~~~~~~~v~~i~~~l~~----------------------------------~~q~l~~SAT~~~~~~~l~~ 422 (630)
||||||||++..|...+-.++.++.. ..+.++||||++..-..+..
T Consensus 300 VIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~ 379 (620)
T KOG0350|consen 300 VIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKD 379 (620)
T ss_pred EechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhh
Confidence 99999999987655554444433321 23578889998877777777
Q ss_pred HHcCCCeEEEEcc----cccccccceEEEEEcCCccccHHHHHHhccCCCCCCCEEEEccchhhHHHHHHHHH----hCC
Q 006824 423 EILSDPVRVTVGE----VGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLA----QKG 494 (630)
Q Consensus 423 ~~~~~~~~i~~~~----~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~----~~~ 494 (630)
--++.|..+.+.. .-.....+.+..... ....|-..+...+... .-.++|+|+++...+.+++..|+ ..+
T Consensus 380 l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~-~~~~kpl~~~~lI~~~-k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~ 457 (620)
T KOG0350|consen 380 LTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVT-EPKFKPLAVYALITSN-KLNRTLCFVNSVSSANRLAHVLKVEFCSDN 457 (620)
T ss_pred hhcCCCceEEeecccceeeecChhhhhceeec-ccccchHhHHHHHHHh-hcceEEEEecchHHHHHHHHHHHHHhcccc
Confidence 7788885544432 112222333333332 3334555555555543 34689999999999999999887 336
Q ss_pred CcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEEEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEE
Q 006824 495 FKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTL 574 (630)
Q Consensus 495 ~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l 574 (630)
+++-.+.|.++...|...+++|..|.++||||+++++||+|+.+++.|||||+|.+...|+||+||++|+| ..|.|+++
T Consensus 458 ~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAg-q~G~a~tl 536 (620)
T KOG0350|consen 458 FKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAG-QDGYAITL 536 (620)
T ss_pred chhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhccccccc-CCceEEEe
Confidence 77888999999999999999999999999999999999999999999999999999999999999999999 57999999
Q ss_pred eccccHHHHHHHHHHHHH
Q 006824 575 VTQKEARFAGELVNSLIA 592 (630)
Q Consensus 575 ~~~~d~~~~~~l~~~l~~ 592 (630)
++..+.....++++....
T Consensus 537 l~~~~~r~F~klL~~~~~ 554 (620)
T KOG0350|consen 537 LDKHEKRLFSKLLKKTNL 554 (620)
T ss_pred eccccchHHHHHHHHhcc
Confidence 999998888888776544
No 37
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=1.7e-47 Score=428.44 Aligned_cols=345 Identities=18% Similarity=0.290 Sum_probs=268.3
Q ss_pred CCcccCC--CCHHHHHHHHH-cCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeE
Q 006824 225 KTFEDCG--FSTQLMHAISK-QGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIG 301 (630)
Q Consensus 225 ~~~~~~~--l~~~l~~~l~~-~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~v 301 (630)
..|...+ ....+...+++ .|+..|+|+|.++|+.++.|+|+|+++|||+|||++|++|++.. ++.+
T Consensus 435 ~~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~-----------~GiT 503 (1195)
T PLN03137 435 KKWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC-----------PGIT 503 (1195)
T ss_pred ccccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc-----------CCcE
Confidence 3466444 44455555554 48999999999999999999999999999999999999999854 4569
Q ss_pred EEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHH------cCCcEEEeChHHHHH---HHHc-cc-ccc
Q 006824 302 VICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELK------AGCEIVIATPGRLID---MLKM-KA-LTM 370 (630)
Q Consensus 302 Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~------~~~dIiv~Tp~~L~~---~l~~-~~-~~l 370 (630)
|||+|+++|+.+++..+... ++.+..+.++....++...+. ..++|+++||++|.. ++.. .. ...
T Consensus 504 LVISPLiSLmqDQV~~L~~~----GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~ 579 (1195)
T PLN03137 504 LVISPLVSLIQDQIMNLLQA----NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSR 579 (1195)
T ss_pred EEEeCHHHHHHHHHHHHHhC----CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhc
Confidence 99999999998666555543 899999999988776654443 358999999999862 2221 11 123
Q ss_pred CceeEEEecchhhhhcCC--cHHHHHHH--HhhcCCCCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEE
Q 006824 371 SRVTYLVLDEADRMFDLG--FEPQIRSI--VGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQV 446 (630)
Q Consensus 371 ~~i~~lVvDEah~~~~~~--~~~~v~~i--~~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~ 446 (630)
..+.+|||||||++++|| |.+.+..+ +...-+..|+++||||+++.+...+...+.....+... ......++ .
T Consensus 580 ~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr-~Sf~RpNL--~ 656 (1195)
T PLN03137 580 GLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFR-QSFNRPNL--W 656 (1195)
T ss_pred cccceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEee-cccCccce--E
Confidence 458999999999999998 77766653 44444678999999999999887666655432211111 11222222 2
Q ss_pred EEEcCCccccHHHHHHhccCCCCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEE
Q 006824 447 VHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIA 526 (630)
Q Consensus 447 ~~~~~~~~~k~~~l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLva 526 (630)
+.++.........+...+.........||||.++..++.++..|...|+.+..+||+|++.+|..+++.|..|+++||||
T Consensus 657 y~Vv~k~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVA 736 (1195)
T PLN03137 657 YSVVPKTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICA 736 (1195)
T ss_pred EEEeccchhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEE
Confidence 23333222223455566554434567899999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccCCCCCCccEEEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEeccccHHHHHHHHH
Q 006824 527 TDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVN 588 (630)
Q Consensus 527 T~~~~~Gldi~~v~~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~~~~~l~~ 588 (630)
|.++++|||+|+|++||||++|.+++.|+||+||+||.| ..|.|++|++..|...+..++.
T Consensus 737 TdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG-~~g~cILlys~~D~~~~~~lI~ 797 (1195)
T PLN03137 737 TVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDG-QRSSCVLYYSYSDYIRVKHMIS 797 (1195)
T ss_pred echhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCC-CCceEEEEecHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999 6799999999988776666553
No 38
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=7.4e-47 Score=410.77 Aligned_cols=327 Identities=20% Similarity=0.322 Sum_probs=258.8
Q ss_pred HcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHH
Q 006824 242 KQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (630)
Q Consensus 242 ~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 321 (630)
..||..|+|+|.++|+.+++|+|+++++|||+|||++|++|++.. ++.+|||+||++|+.|++..+..+
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~-----------~~~~lVi~P~~~L~~dq~~~l~~~ 74 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS-----------DGITLVISPLISLMEDQVLQLKAS 74 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc-----------CCcEEEEecHHHHHHHHHHHHHHc
Confidence 359999999999999999999999999999999999999998753 456899999999999998888765
Q ss_pred hhhcCceEEEEECCCChHHHH---HHHHc-CCcEEEeChHHHHHHHH-cccc-ccCceeEEEecchhhhhcCC--cHHHH
Q 006824 322 AKSHGIRVSAVYGGMSKLDQF---KELKA-GCEIVIATPGRLIDMLK-MKAL-TMSRVTYLVLDEADRMFDLG--FEPQI 393 (630)
Q Consensus 322 ~~~~~~~~~~~~gg~~~~~~~---~~l~~-~~dIiv~Tp~~L~~~l~-~~~~-~l~~i~~lVvDEah~~~~~~--~~~~v 393 (630)
++.+..+.++....+.. ..+.. ..+|+++||+++..... ...+ ....+.+|||||||++.+|+ |.+.+
T Consensus 75 ----gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~ 150 (470)
T TIGR00614 75 ----GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDY 150 (470)
T ss_pred ----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHH
Confidence 78888887776654332 22333 47999999999754221 1111 46789999999999999887 56665
Q ss_pred HHH--HhhcCCCCcEEEEeecccHHHHHHHHHHcC--CCeEEEEcccccccccceEEEEEcCCccccHHHHHHhccCCCC
Q 006824 394 RSI--VGQIRPDRQTLLFSATMPRKVEKLAREILS--DPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMID 469 (630)
Q Consensus 394 ~~i--~~~l~~~~q~l~~SAT~~~~~~~l~~~~~~--~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~~ 469 (630)
..+ +....++.|+++||||+++.+...+...+. +|..+... ....++...+ ..........+...+.....
T Consensus 151 ~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s---~~r~nl~~~v--~~~~~~~~~~l~~~l~~~~~ 225 (470)
T TIGR00614 151 KALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTS---FDRPNLYYEV--RRKTPKILEDLLRFIRKEFK 225 (470)
T ss_pred HHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCC---CCCCCcEEEE--EeCCccHHHHHHHHHHHhcC
Confidence 544 233346889999999999987766555543 44443321 1122222222 22222345556666654334
Q ss_pred CCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEEEEeCCCC
Q 006824 470 DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIAR 549 (630)
Q Consensus 470 ~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~ 549 (630)
...+||||+++..++.++..|...|+.+..+||+|++.+|..+++.|++|+++|||||+++++|+|+|+|++||+|++|.
T Consensus 226 ~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~ 305 (470)
T TIGR00614 226 GKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPK 305 (470)
T ss_pred CCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCC
Confidence 45669999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHhhhcccCCCCCeEEEEEeccccHHHHHHHHHH
Q 006824 550 DMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNS 589 (630)
Q Consensus 550 ~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~~~~~l~~~ 589 (630)
++..|+||+||+||.| ..|.|++|+++.|...+..++..
T Consensus 306 s~~~y~Qr~GRaGR~G-~~~~~~~~~~~~d~~~~~~~~~~ 344 (470)
T TIGR00614 306 SMESYYQESGRAGRDG-LPSECHLFYAPADINRLRRLLME 344 (470)
T ss_pred CHHHHHhhhcCcCCCC-CCceEEEEechhHHHHHHHHHhc
Confidence 9999999999999999 68999999999998877776653
No 39
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=1.2e-44 Score=403.50 Aligned_cols=332 Identities=19% Similarity=0.340 Sum_probs=258.8
Q ss_pred CHHHHHHHHH-cCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHH
Q 006824 233 STQLMHAISK-QGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELA 311 (630)
Q Consensus 233 ~~~l~~~l~~-~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La 311 (630)
+......|++ .||..|+|+|.++++.+++|+|+++++|||+|||++|++|++.. +..+|||+|+++|+
T Consensus 10 ~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~-----------~g~tlVisPl~sL~ 78 (607)
T PRK11057 10 ESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL-----------DGLTLVVSPLISLM 78 (607)
T ss_pred hhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc-----------CCCEEEEecHHHHH
Confidence 3333444444 59999999999999999999999999999999999999999854 34589999999999
Q ss_pred HHHHHHHHHHhhhcCceEEEEECCCChHHHHH---HHHc-CCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcC
Q 006824 312 HQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK---ELKA-GCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDL 387 (630)
Q Consensus 312 ~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~~-~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~ 387 (630)
.|++..+..+ ++.+.++.++........ .+.. ..+++++||++|........+...++++|||||||++.+|
T Consensus 79 ~dqv~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~ 154 (607)
T PRK11057 79 KDQVDQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQW 154 (607)
T ss_pred HHHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccc
Confidence 9998888765 788888877776654432 2232 4789999999987422222333457899999999999988
Q ss_pred C--cHHHHHHH--HhhcCCCCcEEEEeecccHHHHHHHHHHc--CCCeEEEEcccccccccceEEEEEcCCccccHHHHH
Q 006824 388 G--FEPQIRSI--VGQIRPDRQTLLFSATMPRKVEKLAREIL--SDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLL 461 (630)
Q Consensus 388 ~--~~~~v~~i--~~~l~~~~q~l~~SAT~~~~~~~l~~~~~--~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~ 461 (630)
+ |.+.+..+ +....+..+++++|||+++.....+...+ .+|.... .. ....++.. ..+. ...+...+.
T Consensus 155 G~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~-~~--~~r~nl~~--~v~~-~~~~~~~l~ 228 (607)
T PRK11057 155 GHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQI-SS--FDRPNIRY--TLVE-KFKPLDQLM 228 (607)
T ss_pred cCcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEE-CC--CCCCccee--eeee-ccchHHHHH
Confidence 7 56555433 22233678999999999988765444443 3444322 11 11122221 1221 223445555
Q ss_pred HhccCCCCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccE
Q 006824 462 EKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKS 541 (630)
Q Consensus 462 ~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~ 541 (630)
..+... ...++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|+.|+.+|||||+++++|||+|+|++
T Consensus 229 ~~l~~~-~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~ 307 (607)
T PRK11057 229 RYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRF 307 (607)
T ss_pred HHHHhc-CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCE
Confidence 555432 4568999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEeccccHHHHHHHH
Q 006824 542 VVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELV 587 (630)
Q Consensus 542 VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~~~~~l~ 587 (630)
||+|++|.++..|+||+||+||.| ..|.|++|+++.|...+..++
T Consensus 308 VI~~d~P~s~~~y~Qr~GRaGR~G-~~~~~ill~~~~d~~~~~~~~ 352 (607)
T PRK11057 308 VVHFDIPRNIESYYQETGRAGRDG-LPAEAMLFYDPADMAWLRRCL 352 (607)
T ss_pred EEEeCCCCCHHHHHHHhhhccCCC-CCceEEEEeCHHHHHHHHHHH
Confidence 999999999999999999999999 679999999999977766554
No 40
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=7.5e-45 Score=415.13 Aligned_cols=338 Identities=24% Similarity=0.361 Sum_probs=265.7
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEE
Q 006824 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPI-ILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC 304 (630)
Q Consensus 226 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~-il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil 304 (630)
.|++++||+.+++.+.+.|+.+|+|+|.++++. +++|+|+++++|||||||++|.+|++.++. ++.++|||
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~--------~~~kal~i 73 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIA--------RGGKALYI 73 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHh--------cCCcEEEE
Confidence 478899999999999999999999999999998 779999999999999999999999999884 25679999
Q ss_pred cccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhh
Q 006824 305 APTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRM 384 (630)
Q Consensus 305 ~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~ 384 (630)
+||++||.|++..+.++.. +|+++..++|+...... ....++|+||||+++..++......+.++++|||||+|.+
T Consensus 74 ~P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l 149 (737)
T PRK02362 74 VPLRALASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLI 149 (737)
T ss_pred eChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECcccc
Confidence 9999999999999998754 58999999988765432 2345899999999999998876667889999999999999
Q ss_pred hcCCcHHHHHHHHhhc---CCCCcEEEEeecccHHHHHHHHHHcCC-------CeEEEEcc--cccccccceEEEEEcCC
Q 006824 385 FDLGFEPQIRSIVGQI---RPDRQTLLFSATMPRKVEKLAREILSD-------PVRVTVGE--VGMANEDITQVVHVIPS 452 (630)
Q Consensus 385 ~~~~~~~~v~~i~~~l---~~~~q~l~~SAT~~~~~~~l~~~~~~~-------~~~i~~~~--~~~~~~~i~q~~~~~~~ 452 (630)
.+.+++..++.++..+ .+..|+|++|||+++. ..++.++... |+.+..+. .........+.......
T Consensus 150 ~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~-~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~ 228 (737)
T PRK02362 150 DSANRGPTLEVTLAKLRRLNPDLQVVALSATIGNA-DELADWLDAELVDSEWRPIDLREGVFYGGAIHFDDSQREVEVPS 228 (737)
T ss_pred CCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCH-HHHHHHhCCCcccCCCCCCCCeeeEecCCeeccccccccCCCcc
Confidence 9888888888776655 4788999999999753 5566655322 21111100 00000000000000011
Q ss_pred ccccHHHHHHhccCCCCCCCEEEEccchhhHHHHHHHHHhC------------------------------------CCc
Q 006824 453 DAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK------------------------------------GFK 496 (630)
Q Consensus 453 ~~~k~~~l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~------------------------------------~~~ 496 (630)
.......+...+. ..+++||||+++..|+.++..|... ...
T Consensus 229 ~~~~~~~~~~~~~---~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~g 305 (737)
T PRK02362 229 KDDTLNLVLDTLE---EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKG 305 (737)
T ss_pred chHHHHHHHHHHH---cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhC
Confidence 1112223333332 4679999999999999998888642 136
Q ss_pred EEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEEEE----eC-----CCCCHHHHHHHhhhcccCC-C
Q 006824 497 AAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN----FD-----IARDMDMHVHRIGRTGRAG-D 566 (630)
Q Consensus 497 ~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI~----~~-----~p~~~~~y~QriGR~gR~g-~ 566 (630)
++.+||+|++.+|..+++.|++|.++|||||+++++|+|+|.+++||+ |+ .|.++.+|.||+||+||.| +
T Consensus 306 va~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d 385 (737)
T PRK02362 306 AAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLD 385 (737)
T ss_pred EEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCC
Confidence 899999999999999999999999999999999999999999999997 76 5889999999999999999 4
Q ss_pred CCeEEEEEecccc
Q 006824 567 KDGTAYTLVTQKE 579 (630)
Q Consensus 567 ~~g~~~~l~~~~d 579 (630)
..|.++++....+
T Consensus 386 ~~G~~ii~~~~~~ 398 (737)
T PRK02362 386 PYGEAVLLAKSYD 398 (737)
T ss_pred CCceEEEEecCch
Confidence 4599999987653
No 41
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=4.5e-44 Score=412.18 Aligned_cols=342 Identities=22% Similarity=0.289 Sum_probs=253.4
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCccc-ccCCCeEEEEcccHHH
Q 006824 232 FSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQ-KEEGPIGVICAPTREL 310 (630)
Q Consensus 232 l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~-~~~~~~vLil~Ptr~L 310 (630)
|++.+.+.+.+ +|..|+|+|.++||.+++|+|++++||||||||++|++|++.+++...... ..+++++|||+||++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 55556565554 789999999999999999999999999999999999999999987543211 1347889999999999
Q ss_pred HHHHHHHHHH-------Hhh----hc-CceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHcccc--ccCceeEE
Q 006824 311 AHQIYLETKK-------FAK----SH-GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKAL--TMSRVTYL 376 (630)
Q Consensus 311 a~Q~~~~~~~-------~~~----~~-~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~--~l~~i~~l 376 (630)
+.|++..+.. ++. .. ++++.+.+|+.......+.+...++|+||||++|..++..... .++++.+|
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~V 176 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWV 176 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEE
Confidence 9999886653 221 12 6688889999888777777778899999999999888765432 47899999
Q ss_pred EecchhhhhcCCcHHHHHHHHhh----cCCCCcEEEEeecccHHHHHHHHHHcCC-----C--eEEEEcccccccccceE
Q 006824 377 VLDEADRMFDLGFEPQIRSIVGQ----IRPDRQTLLFSATMPRKVEKLAREILSD-----P--VRVTVGEVGMANEDITQ 445 (630)
Q Consensus 377 VvDEah~~~~~~~~~~v~~i~~~----l~~~~q~l~~SAT~~~~~~~l~~~~~~~-----~--~~i~~~~~~~~~~~i~q 445 (630)
||||+|.+.+..++.++...+.. ..+..|++++|||+++. ..++.++... + ..+... .......+..
T Consensus 177 VIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~-~~va~~L~~~~~~~~~r~~~iv~~-~~~k~~~i~v 254 (876)
T PRK13767 177 IVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPL-EEVAKFLVGYEDDGEPRDCEIVDA-RFVKPFDIKV 254 (876)
T ss_pred EEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCH-HHHHHHhcCccccCCCCceEEEcc-CCCccceEEE
Confidence 99999999987777666554433 33678999999999763 4455444321 2 222111 0000101110
Q ss_pred EEE---Ec-CCccccHHHHHHhccCC-CCCCCEEEEccchhhHHHHHHHHHhC------CCcEEEEeCCCCHHHHHHHHH
Q 006824 446 VVH---VI-PSDAEKLPWLLEKLPGM-IDDGDVLVFASKKTTVDEIESQLAQK------GFKAAALHGDKDQASRMEILQ 514 (630)
Q Consensus 446 ~~~---~~-~~~~~k~~~l~~~l~~~-~~~~~iLIF~~s~~~~~~l~~~L~~~------~~~~~~ihg~~~~~~r~~~~~ 514 (630)
... .. .........+...+... ...+++||||+|+..|+.++..|... +..+.++||++++.+|..+++
T Consensus 255 ~~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~ 334 (876)
T PRK13767 255 ISPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEE 334 (876)
T ss_pred eccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHH
Confidence 000 00 01111122223333222 12568999999999999999999873 468999999999999999999
Q ss_pred HhhcCCceEEEEcCCcccCCCCCCccEEEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEec
Q 006824 515 KFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVT 576 (630)
Q Consensus 515 ~F~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~ 576 (630)
.|++|+++|||||+++++|||+|++++||+|+.|.++..|+||+||+||.+...+..+++..
T Consensus 335 ~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~ 396 (876)
T PRK13767 335 KLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVV 396 (876)
T ss_pred HHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEc
Confidence 99999999999999999999999999999999999999999999999997533333444433
No 42
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=5e-44 Score=407.37 Aligned_cols=339 Identities=22% Similarity=0.307 Sum_probs=266.7
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEE
Q 006824 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPI-ILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC 304 (630)
Q Consensus 226 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~-il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil 304 (630)
+|.++++++.+.+.+.+.|+.+|+|+|.++++. +++|+|+++++|||||||++|.+|++.++... +.++|||
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~-------~~~~l~l 74 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE-------GGKAVYL 74 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc-------CCeEEEE
Confidence 577889999999999999999999999999986 88999999999999999999999999987542 5689999
Q ss_pred cccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhh
Q 006824 305 APTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRM 384 (630)
Q Consensus 305 ~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~ 384 (630)
+|+++||.|++..+..+. ..++++..++|+...... ....++|+|+||+++..++......++++++|||||+|.+
T Consensus 75 ~P~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l 150 (720)
T PRK00254 75 VPLKALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLI 150 (720)
T ss_pred eChHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCcc
Confidence 999999999999998864 468999999998765432 2356899999999999988877667899999999999999
Q ss_pred hcCCcHHHHHHHHhhcCCCCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCc-ccc-----HH
Q 006824 385 FDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSD-AEK-----LP 458 (630)
Q Consensus 385 ~~~~~~~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~-~~k-----~~ 458 (630)
.+.+++..+..++..+....|+|++|||+++. ..++.++....................+.+...... ..+ ..
T Consensus 151 ~~~~rg~~le~il~~l~~~~qiI~lSATl~n~-~~la~wl~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (720)
T PRK00254 151 GSYDRGATLEMILTHMLGRAQILGLSATVGNA-EELAEWLNAELVVSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWES 229 (720)
T ss_pred CCccchHHHHHHHHhcCcCCcEEEEEccCCCH-HHHHHHhCCccccCCCCCCcceeeEecCCeeeccCcchhcchHHHHH
Confidence 98889999999999999999999999999863 666665433221111000000000011111111111 011 12
Q ss_pred HHHHhccCCCCCCCEEEEccchhhHHHHHHHHHhC---------------------------------CCcEEEEeCCCC
Q 006824 459 WLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK---------------------------------GFKAAALHGDKD 505 (630)
Q Consensus 459 ~l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~---------------------------------~~~~~~ihg~~~ 505 (630)
.+.+.+. ..+++||||+++..|+.++..|... ...++.+||+|+
T Consensus 230 ~~~~~i~---~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~ 306 (720)
T PRK00254 230 LVYDAVK---KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLG 306 (720)
T ss_pred HHHHHHH---hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCC
Confidence 2223332 3578999999999998887666421 235899999999
Q ss_pred HHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEEEE-------eCCCC-CHHHHHHHhhhcccCC-CCCeEEEEEec
Q 006824 506 QASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN-------FDIAR-DMDMHVHRIGRTGRAG-DKDGTAYTLVT 576 (630)
Q Consensus 506 ~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI~-------~~~p~-~~~~y~QriGR~gR~g-~~~g~~~~l~~ 576 (630)
+.+|..+.+.|++|.++|||||+++++|+|+|++.+||. ++.|. ....|.||+||+||.| +..|.++++++
T Consensus 307 ~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~ 386 (720)
T PRK00254 307 RTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVAT 386 (720)
T ss_pred HHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEec
Confidence 999999999999999999999999999999999999984 55544 4679999999999987 56799999988
Q ss_pred ccc
Q 006824 577 QKE 579 (630)
Q Consensus 577 ~~d 579 (630)
..+
T Consensus 387 ~~~ 389 (720)
T PRK00254 387 TEE 389 (720)
T ss_pred Ccc
Confidence 755
No 43
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=1.2e-43 Score=396.71 Aligned_cols=322 Identities=21% Similarity=0.357 Sum_probs=259.3
Q ss_pred cCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHh
Q 006824 243 QGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (630)
Q Consensus 243 ~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 322 (630)
.||..|+|+|.++|+.+++|+|+++++|||+|||++|++|++.+ +..+|||+|+++|+.|++..+..+
T Consensus 9 fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~-----------~g~~lVisPl~sL~~dq~~~l~~~- 76 (591)
T TIGR01389 9 FGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL-----------KGLTVVISPLISLMKDQVDQLRAA- 76 (591)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc-----------CCcEEEEcCCHHHHHHHHHHHHHc-
Confidence 69999999999999999999999999999999999999999853 345899999999999998888775
Q ss_pred hhcCceEEEEECCCChHHHHHH---HH-cCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCC--cHHHHHHH
Q 006824 323 KSHGIRVSAVYGGMSKLDQFKE---LK-AGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG--FEPQIRSI 396 (630)
Q Consensus 323 ~~~~~~~~~~~gg~~~~~~~~~---l~-~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~--~~~~v~~i 396 (630)
|+.+..+.++.+..+.... +. +..+|+++||++|............++++|||||||++.+|| |.+.+..+
T Consensus 77 ---gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l 153 (591)
T TIGR01389 77 ---GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRL 153 (591)
T ss_pred ---CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHH
Confidence 7888888887776544322 22 458999999999975433334456789999999999999886 66665544
Q ss_pred ---HhhcCCCCcEEEEeecccHHHHHHHHHHcC--CCeEEEEcccccccccceEEEEEcCCccccHHHHHHhccCCCCCC
Q 006824 397 ---VGQIRPDRQTLLFSATMPRKVEKLAREILS--DPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDG 471 (630)
Q Consensus 397 ---~~~l~~~~q~l~~SAT~~~~~~~l~~~~~~--~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~~~~ 471 (630)
...+ +..+++++|||+++.+...+...+. ++..+. . .....++.. ... ....+...+...+.... ..
T Consensus 154 ~~l~~~~-~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~-~--~~~r~nl~~--~v~-~~~~~~~~l~~~l~~~~-~~ 225 (591)
T TIGR01389 154 GSLAERF-PQVPRIALTATADAETRQDIRELLRLADANEFI-T--SFDRPNLRF--SVV-KKNNKQKFLLDYLKKHR-GQ 225 (591)
T ss_pred HHHHHhC-CCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEe-c--CCCCCCcEE--EEE-eCCCHHHHHHHHHHhcC-CC
Confidence 3333 3556999999999988776666554 333222 1 111222222 222 12346667777776542 56
Q ss_pred CEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEEEEeCCCCCH
Q 006824 472 DVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDM 551 (630)
Q Consensus 472 ~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~~~ 551 (630)
++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|.+|+++|||||+++++|+|+|++++||+|++|.|+
T Consensus 226 ~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~ 305 (591)
T TIGR01389 226 SGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNL 305 (591)
T ss_pred CEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcccCCCCCeEEEEEeccccHHHHHHHHH
Q 006824 552 DMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVN 588 (630)
Q Consensus 552 ~~y~QriGR~gR~g~~~g~~~~l~~~~d~~~~~~l~~ 588 (630)
..|+|++||+||.| ..|.|++|+++.|...+..++.
T Consensus 306 ~~y~Q~~GRaGR~G-~~~~~il~~~~~d~~~~~~~i~ 341 (591)
T TIGR01389 306 ESYYQEAGRAGRDG-LPAEAILLYSPADIALLKRRIE 341 (591)
T ss_pred HHHhhhhccccCCC-CCceEEEecCHHHHHHHHHHHh
Confidence 99999999999999 6799999999988776665543
No 44
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=6e-43 Score=387.16 Aligned_cols=315 Identities=21% Similarity=0.288 Sum_probs=247.8
Q ss_pred cCCCCCcHHHHHHHHHHHcCC-CEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEE-EcccHHHHHHHHHHHHH
Q 006824 243 QGYEKPTSIQCQALPIILSGR-DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVI-CAPTRELAHQIYLETKK 320 (630)
Q Consensus 243 ~~~~~~~~~Q~~~i~~il~g~-d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLi-l~Ptr~La~Q~~~~~~~ 320 (630)
.||. |+|+|.+++|.++.|+ ++++.+|||||||.++.++++... .....|+.|| ++|||+|+.|+++.+.+
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~------~~~~~~~rLv~~vPtReLa~Qi~~~~~~ 84 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVE------IGAKVPRRLVYVVNRRTVVDQVTEEAEK 84 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhcccc------ccccccceEEEeCchHHHHHHHHHHHHH
Confidence 4787 9999999999999998 577789999999987655554321 1123455555 67999999999999999
Q ss_pred Hhhhc-----------------------CceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHcccc---------
Q 006824 321 FAKSH-----------------------GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKAL--------- 368 (630)
Q Consensus 321 ~~~~~-----------------------~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~--------- 368 (630)
+++.+ .+++.+++||.+...++..+..+++|||+|+ +++.+..+
T Consensus 85 ~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~----D~i~sr~L~~gYg~~~~ 160 (844)
T TIGR02621 85 IGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTV----DMIGSRLLFSGYGCGFK 160 (844)
T ss_pred HHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECH----HHHcCCccccccccccc
Confidence 98765 4889999999999999999999999999996 44444443
Q ss_pred -------ccCceeEEEecchhhhhcCCcHHHHHHHHhhc--CC---CCcEEEEeecccHHHHHHHHHHcCCCeEEEEccc
Q 006824 369 -------TMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI--RP---DRQTLLFSATMPRKVEKLAREILSDPVRVTVGEV 436 (630)
Q Consensus 369 -------~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l--~~---~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~ 436 (630)
.++.+++||||||| ++++|...+..|+..+ .+ .+|+++||||++..+..++..++.++..+.+...
T Consensus 161 ~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~ 238 (844)
T TIGR02621 161 SRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKK 238 (844)
T ss_pred cccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccc
Confidence 26789999999999 6799999999999975 33 2699999999999888888888878876665443
Q ss_pred ccccccceEEEEEcCCccccHHHHHHhccC--CCCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHH----
Q 006824 437 GMANEDITQVVHVIPSDAEKLPWLLEKLPG--MIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRM---- 510 (630)
Q Consensus 437 ~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~--~~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~---- 510 (630)
......+.+.+ .. ....|...++..+.. ....+++|||||++..++.++..|...++ ..+||.|++.+|.
T Consensus 239 ~l~a~ki~q~v-~v-~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~ 314 (844)
T TIGR02621 239 RLAAKKIVKLV-PP-SDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVK 314 (844)
T ss_pred cccccceEEEE-ec-ChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHH
Confidence 34444555532 22 222344343333211 12356899999999999999999998876 9999999999999
Q ss_pred -HHHHHhhc----CC-------ceEEEEcCCcccCCCCCCccEEEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEecc
Q 006824 511 -EILQKFKS----GV-------YHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ 577 (630)
Q Consensus 511 -~~~~~F~~----g~-------~~VLvaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~ 577 (630)
.+++.|++ |. ..|||||+++++||||+. ++||++..| ++.|+||+||+||.|...+.++++++.
T Consensus 315 ~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 315 KEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred HHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 88999987 54 689999999999999986 899998776 799999999999999544555666643
No 45
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-44 Score=334.01 Aligned_cols=335 Identities=29% Similarity=0.492 Sum_probs=286.9
Q ss_pred CCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEE
Q 006824 223 PVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGV 302 (630)
Q Consensus 223 p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vL 302 (630)
..+.|.++-|++++++++...||..|+.+|.++||...-|-|++.+|..|.|||.+|++..|..+--- .....+|
T Consensus 40 hssgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv-----~g~vsvl 114 (387)
T KOG0329|consen 40 HSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPV-----DGQVSVL 114 (387)
T ss_pred eccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCC-----CCeEEEE
Confidence 34678899999999999999999999999999999999999999999999999999999988876221 1235689
Q ss_pred EEcccHHHHHHHHHHHHHHhhhc-CceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecch
Q 006824 303 ICAPTRELAHQIYLETKKFAKSH-GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEA 381 (630)
Q Consensus 303 il~Ptr~La~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEa 381 (630)
++|.||+||.|+.++..+|++.. ++++.+++||.........+++.++|+|+||+++..+.+...++++.+..+|+|||
T Consensus 115 vmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEc 194 (387)
T KOG0329|consen 115 VMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDEC 194 (387)
T ss_pred EEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhH
Confidence 99999999999999999998865 78999999999988888888888899999999999999999999999999999999
Q ss_pred hhhhcC-CcHHHHHHHHhhcCCCCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccc-cccccceEEEEEcCCccccHHH
Q 006824 382 DRMFDL-GFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVG-MANEDITQVVHVIPSDAEKLPW 459 (630)
Q Consensus 382 h~~~~~-~~~~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~~i~q~~~~~~~~~~k~~~ 459 (630)
|.|+++ ..+..+..|+...+...|+++||||++.+++..++.++.+|..+.+.... .......|.+..+. +..|...
T Consensus 195 dkmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLk-e~eKNrk 273 (387)
T KOG0329|consen 195 DKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLK-ENEKNRK 273 (387)
T ss_pred HHHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhh-hhhhhhh
Confidence 998854 56888999999999999999999999999999999999999998887643 44566677766664 4567777
Q ss_pred HHHhccCCCCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCc
Q 006824 460 LLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSI 539 (630)
Q Consensus 460 l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v 539 (630)
+.++|... .-.+++||+.+... | . | ..+ ||||++++||+||..+
T Consensus 274 l~dLLd~L-eFNQVvIFvKsv~R-------l-----------------------~-f---~kr-~vat~lfgrgmdierv 317 (387)
T KOG0329|consen 274 LNDLLDVL-EFNQVVIFVKSVQR-------L-----------------------S-F---QKR-LVATDLFGRGMDIERV 317 (387)
T ss_pred hhhhhhhh-hhcceeEeeehhhh-------h-----------------------h-h---hhh-hHHhhhhccccCcccc
Confidence 77766543 45689999988665 0 0 3 223 8999999999999999
Q ss_pred cEEEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEecc-ccHHHHHHHHHHHHHcCCCCCHH
Q 006824 540 KSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ-KEARFAGELVNSLIAAGQNVSME 600 (630)
Q Consensus 540 ~~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~-~d~~~~~~l~~~l~~~~~~vp~~ 600 (630)
+.|+|||+|.++++|+||+||+||.| ..|.+++|++. +|...+..+....+-.-.++|++
T Consensus 318 Ni~~NYdmp~~~DtYlHrv~rAgrfG-tkglaitfvs~e~da~iLn~vqdRf~v~i~eLpde 378 (387)
T KOG0329|consen 318 NIVFNYDMPEDSDTYLHRVARAGRFG-TKGLAITFVSDENDAKILNPVQDRFEVNIKELPDE 378 (387)
T ss_pred eeeeccCCCCCchHHHHHhhhhhccc-cccceeehhcchhhHHHhchhhHhhhccHhhcCcc
Confidence 99999999999999999999999999 57999999986 46677777766666666677766
No 46
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=1.3e-41 Score=387.50 Aligned_cols=334 Identities=19% Similarity=0.260 Sum_probs=257.6
Q ss_pred CCHHHHHHHHH-cCCCCCcHHHHHHHHHHHcC------CCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEE
Q 006824 232 FSTQLMHAISK-QGYEKPTSIQCQALPIILSG------RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC 304 (630)
Q Consensus 232 l~~~l~~~l~~-~~~~~~~~~Q~~~i~~il~g------~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil 304 (630)
.+..+...+.. .+| +|||+|.++|+.++++ +|++++|+||+|||.+|+++++..+.. +++++||
T Consensus 436 ~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~--------g~qvlvL 506 (926)
T TIGR00580 436 PDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD--------GKQVAVL 506 (926)
T ss_pred CCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh--------CCeEEEE
Confidence 34455565555 477 5999999999999975 799999999999999999999887643 5789999
Q ss_pred cccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHH---HHHHHc-CCcEEEeChHHHHHHHHccccccCceeEEEecc
Q 006824 305 APTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ---FKELKA-GCEIVIATPGRLIDMLKMKALTMSRVTYLVLDE 380 (630)
Q Consensus 305 ~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~l~~-~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDE 380 (630)
+||++||.|+++.+.+++..+++++..++|+.+..+. ...+.. .++|||+||..+ .....++++++|||||
T Consensus 507 vPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L~llVIDE 581 (926)
T TIGR00580 507 VPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL-----QKDVKFKDLGLLIIDE 581 (926)
T ss_pred eCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh-----hCCCCcccCCEEEeec
Confidence 9999999999999999988888999888887764433 334444 489999999432 2345678999999999
Q ss_pred hhhhhcCCcHHHHHHHHhhcCCCCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCcccc-HHH
Q 006824 381 ADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEK-LPW 459 (630)
Q Consensus 381 ah~~~~~~~~~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k-~~~ 459 (630)
+|++ +......+..+++..|+++||||+.+....+......++..+...... ...+...+.... ... ...
T Consensus 582 ahrf-----gv~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~--R~~V~t~v~~~~--~~~i~~~ 652 (926)
T TIGR00580 582 EQRF-----GVKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPED--RLPVRTFVMEYD--PELVREA 652 (926)
T ss_pred cccc-----chhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCC--ccceEEEEEecC--HHHHHHH
Confidence 9994 334455667777889999999998877665655555566555433221 223333333221 111 122
Q ss_pred HHHhccCCCCCCCEEEEccchhhHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCC
Q 006824 460 LLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK--GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIK 537 (630)
Q Consensus 460 l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~--~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~ 537 (630)
+...+ ...++++|||++...++.+++.|.+. ++++..+||+|++.+|..++..|++|+.+|||||+++++|+|+|
T Consensus 653 i~~el---~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp 729 (926)
T TIGR00580 653 IRREL---LRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIP 729 (926)
T ss_pred HHHHH---HcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccc
Confidence 22222 24679999999999999999999885 78999999999999999999999999999999999999999999
Q ss_pred CccEEEEeCCCC-CHHHHHHHhhhcccCCCCCeEEEEEecccc--HHHHHHHHHHHHH
Q 006824 538 SIKSVVNFDIAR-DMDMHVHRIGRTGRAGDKDGTAYTLVTQKE--ARFAGELVNSLIA 592 (630)
Q Consensus 538 ~v~~VI~~~~p~-~~~~y~QriGR~gR~g~~~g~~~~l~~~~d--~~~~~~l~~~l~~ 592 (630)
++++||+++.|. +...|.||+||+||.| +.|.|++|+...+ .....+-++.+..
T Consensus 730 ~v~~VIi~~a~~~gls~l~Qr~GRvGR~g-~~g~aill~~~~~~l~~~~~~RL~~~~~ 786 (926)
T TIGR00580 730 NANTIIIERADKFGLAQLYQLRGRVGRSK-KKAYAYLLYPHQKALTEDAQKRLEAIQE 786 (926)
T ss_pred cCCEEEEecCCCCCHHHHHHHhcCCCCCC-CCeEEEEEECCcccCCHHHHHHHHHHHH
Confidence 999999999875 6779999999999998 6899999987653 2333333444433
No 47
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=6.3e-42 Score=388.54 Aligned_cols=334 Identities=21% Similarity=0.305 Sum_probs=256.6
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEc
Q 006824 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICA 305 (630)
Q Consensus 226 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~ 305 (630)
.|.+++|++.+++.+.+.+|. |+|+|.++++.+.+++++++++|||||||+++.++++.++.. +.++|||+
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~--------~~k~v~i~ 72 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA--------GLKSIYIV 72 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh--------CCcEEEEe
Confidence 467889999999999999886 999999999999999999999999999999999999888743 46799999
Q ss_pred ccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhh
Q 006824 306 PTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (630)
Q Consensus 306 Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~ 385 (630)
|+++||.|+++.+.++. ..|+++...+|+...... ....++|+|+||+++..++.+....+.++++|||||||.+.
T Consensus 73 P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~ 148 (674)
T PRK01172 73 PLRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIG 148 (674)
T ss_pred chHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhcc
Confidence 99999999999999864 468888888887654332 23468999999999999888776678899999999999998
Q ss_pred cCCcHHHHHHHHhh---cCCCCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEE-----EEcCCccccH
Q 006824 386 DLGFEPQIRSIVGQ---IRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVV-----HVIPSDAEKL 457 (630)
Q Consensus 386 ~~~~~~~v~~i~~~---l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~-----~~~~~~~~k~ 457 (630)
+.+++..+..++.. +++..|+|++|||+++ ...++.++.......... ...+.... ..+.......
T Consensus 149 d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n-~~~la~wl~~~~~~~~~r-----~vpl~~~i~~~~~~~~~~~~~~~ 222 (674)
T PRK01172 149 DEDRGPTLETVLSSARYVNPDARILALSATVSN-ANELAQWLNASLIKSNFR-----PVPLKLGILYRKRLILDGYERSQ 222 (674)
T ss_pred CCCccHHHHHHHHHHHhcCcCCcEEEEeCccCC-HHHHHHHhCCCccCCCCC-----CCCeEEEEEecCeeeeccccccc
Confidence 88888777776554 4578899999999975 356666553322111100 00111000 0111110011
Q ss_pred HHHHHhccC-CCCCCCEEEEccchhhHHHHHHHHHhC-------------------------CCcEEEEeCCCCHHHHHH
Q 006824 458 PWLLEKLPG-MIDDGDVLVFASKKTTVDEIESQLAQK-------------------------GFKAAALHGDKDQASRME 511 (630)
Q Consensus 458 ~~l~~~l~~-~~~~~~iLIF~~s~~~~~~l~~~L~~~-------------------------~~~~~~ihg~~~~~~r~~ 511 (630)
..+...+.. ....+++||||+++..++.++..|... ...++.+||++++.+|..
T Consensus 223 ~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ 302 (674)
T PRK01172 223 VDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRF 302 (674)
T ss_pred ccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHH
Confidence 112222222 124679999999999999999888653 125889999999999999
Q ss_pred HHHHhhcCCceEEEEcCCcccCCCCCCccEEEEeCC---------CCCHHHHHHHhhhcccCC-CCCeEEEEEecccc
Q 006824 512 ILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDI---------ARDMDMHVHRIGRTGRAG-DKDGTAYTLVTQKE 579 (630)
Q Consensus 512 ~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~---------p~~~~~y~QriGR~gR~g-~~~g~~~~l~~~~d 579 (630)
+.+.|++|.++|||||+++++|+|+|+. .||+++. |.++.+|.||+||+||.| +..|.+++++...+
T Consensus 303 ve~~f~~g~i~VLvaT~~la~Gvnipa~-~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~ 379 (674)
T PRK01172 303 IEEMFRNRYIKVIVATPTLAAGVNLPAR-LVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPA 379 (674)
T ss_pred HHHHHHcCCCeEEEecchhhccCCCcce-EEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcc
Confidence 9999999999999999999999999985 5665543 457889999999999998 45688888766443
No 48
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=9.8e-41 Score=388.13 Aligned_cols=316 Identities=19% Similarity=0.233 Sum_probs=251.1
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHHcC------CCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHH
Q 006824 237 MHAISKQGYEKPTSIQCQALPIILSG------RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTREL 310 (630)
Q Consensus 237 ~~~l~~~~~~~~~~~Q~~~i~~il~g------~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~L 310 (630)
.+.....+| .||+.|.++|+.++++ +|++++++||+|||.+|+.+++..+. ++++++||+||++|
T Consensus 591 ~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~--------~g~qvlvLvPT~eL 661 (1147)
T PRK10689 591 QLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE--------NHKQVAVLVPTTLL 661 (1147)
T ss_pred HHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH--------cCCeEEEEeCcHHH
Confidence 344455677 7999999999999987 89999999999999999888876652 37789999999999
Q ss_pred HHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHH---H-cCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhc
Q 006824 311 AHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKEL---K-AGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFD 386 (630)
Q Consensus 311 a~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~-~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~ 386 (630)
|.|++..+.+++...++++.+++|+.+..++...+ . ++++|||+||+.+. ....+.++++|||||+|++
T Consensus 662 A~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~-----~~v~~~~L~lLVIDEahrf-- 734 (1147)
T PRK10689 662 AQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ-----SDVKWKDLGLLIVDEEHRF-- 734 (1147)
T ss_pred HHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh-----CCCCHhhCCEEEEechhhc--
Confidence 99999999998877788888888888876665443 2 35899999996442 2345778999999999996
Q ss_pred CCcHHHHHHHHhhcCCCCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCccccHHHHHHhccC
Q 006824 387 LGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPG 466 (630)
Q Consensus 387 ~~~~~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~ 466 (630)
++. ....+..+++++|+++||||+++....++...+.++..+...... ...+.+.+..+.....+ ..+.. .
T Consensus 735 -G~~--~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~--r~~v~~~~~~~~~~~~k-~~il~---e 805 (1147)
T PRK10689 735 -GVR--HKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR--RLAVKTFVREYDSLVVR-EAILR---E 805 (1147)
T ss_pred -chh--HHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCC--CCCceEEEEecCcHHHH-HHHHH---H
Confidence 322 245567778899999999999888888888888888776543322 22344433332211111 22222 2
Q ss_pred CCCCCCEEEEccchhhHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEEEE
Q 006824 467 MIDDGDVLVFASKKTTVDEIESQLAQK--GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN 544 (630)
Q Consensus 467 ~~~~~~iLIF~~s~~~~~~l~~~L~~~--~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI~ 544 (630)
....++++||||++..++.+++.|.+. ++.+.++||+|++.+|.+++..|++|+++|||||+++++|+|+|++++||+
T Consensus 806 l~r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi 885 (1147)
T PRK10689 806 ILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIII 885 (1147)
T ss_pred HhcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEE
Confidence 234679999999999999999999887 789999999999999999999999999999999999999999999999996
Q ss_pred eCCC-CCHHHHHHHhhhcccCCCCCeEEEEEeccc
Q 006824 545 FDIA-RDMDMHVHRIGRTGRAGDKDGTAYTLVTQK 578 (630)
Q Consensus 545 ~~~p-~~~~~y~QriGR~gR~g~~~g~~~~l~~~~ 578 (630)
.+.. .+...|.||+||+||.| +.|.|++++...
T Consensus 886 ~~ad~fglaq~~Qr~GRvGR~g-~~g~a~ll~~~~ 919 (1147)
T PRK10689 886 ERADHFGLAQLHQLRGRVGRSH-HQAYAWLLTPHP 919 (1147)
T ss_pred ecCCCCCHHHHHHHhhccCCCC-CceEEEEEeCCC
Confidence 6543 35678999999999999 679999887653
No 49
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=2.5e-40 Score=372.56 Aligned_cols=338 Identities=21% Similarity=0.284 Sum_probs=250.1
Q ss_pred HHHHHHHH-HcCCCCCcHHHHHHHHHHHcC------CCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcc
Q 006824 234 TQLMHAIS-KQGYEKPTSIQCQALPIILSG------RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAP 306 (630)
Q Consensus 234 ~~l~~~l~-~~~~~~~~~~Q~~~i~~il~g------~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~P 306 (630)
..+.+.+. ..+| +||++|.++++.+.++ .+++++|+||||||++|++|++..+. +|.+++|++|
T Consensus 248 ~~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~--------~g~q~lilaP 318 (681)
T PRK10917 248 GELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE--------AGYQAALMAP 318 (681)
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH--------cCCeEEEEec
Confidence 34444444 4466 6999999999999977 47999999999999999999988763 3778999999
Q ss_pred cHHHHHHHHHHHHHHhhhcCceEEEEECCCChH---HHHHHHHcC-CcEEEeChHHHHHHHHccccccCceeEEEecchh
Q 006824 307 TRELAHQIYLETKKFAKSHGIRVSAVYGGMSKL---DQFKELKAG-CEIVIATPGRLIDMLKMKALTMSRVTYLVLDEAD 382 (630)
Q Consensus 307 tr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~---~~~~~l~~~-~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah 382 (630)
|++||.|+++.+++++...++++.+++|+.+.. .....+..| ++|+|+||+.+.. ...+.+++++||||+|
T Consensus 319 T~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~H 393 (681)
T PRK10917 319 TEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQH 393 (681)
T ss_pred cHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechh
Confidence 999999999999999998899999999998854 334455554 9999999987743 3357889999999999
Q ss_pred hhhcCCcHHHHHHHHhhcCCCCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCccccHHHHHH
Q 006824 383 RMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLE 462 (630)
Q Consensus 383 ~~~~~~~~~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~ 462 (630)
++.. .....+......+++++||||+.+....+. ...+.....+.........+...+... .+...++.
T Consensus 394 rfg~-----~qr~~l~~~~~~~~iL~~SATp~prtl~~~--~~g~~~~s~i~~~p~~r~~i~~~~~~~----~~~~~~~~ 462 (681)
T PRK10917 394 RFGV-----EQRLALREKGENPHVLVMTATPIPRTLAMT--AYGDLDVSVIDELPPGRKPITTVVIPD----SRRDEVYE 462 (681)
T ss_pred hhhH-----HHHHHHHhcCCCCCEEEEeCCCCHHHHHHH--HcCCCceEEEecCCCCCCCcEEEEeCc----ccHHHHHH
Confidence 9532 223334444556899999999877644333 333322222222222223343333221 22333333
Q ss_pred hccCC-CCCCCEEEEccch--------hhHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcc
Q 006824 463 KLPGM-IDDGDVLVFASKK--------TTVDEIESQLAQK--GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAA 531 (630)
Q Consensus 463 ~l~~~-~~~~~iLIF~~s~--------~~~~~l~~~L~~~--~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~ 531 (630)
.+... ....+++|||+.. ..+..+++.|... ++.+..+||+|++.+|..+++.|++|+.+|||||++++
T Consensus 463 ~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie 542 (681)
T PRK10917 463 RIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIE 542 (681)
T ss_pred HHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECccee
Confidence 33322 2356899999964 3456677777765 57899999999999999999999999999999999999
Q ss_pred cCCCCCCccEEEEeCCCC-CHHHHHHHhhhcccCCCCCeEEEEEeccccHHHHHHHHHHHHHcCCCC
Q 006824 532 RGLDIKSIKSVVNFDIAR-DMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNV 597 (630)
Q Consensus 532 ~Gldi~~v~~VI~~~~p~-~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~~~~~l~~~l~~~~~~v 597 (630)
+|+|+|++++||+|++|. ....|.||+||+||.| ..|.|+++++........+.++.+......+
T Consensus 543 ~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g-~~g~~ill~~~~~~~~~~~rl~~~~~~~dgf 608 (681)
T PRK10917 543 VGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGA-AQSYCVLLYKDPLSETARERLKIMRETNDGF 608 (681)
T ss_pred eCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCC-CceEEEEEECCCCChhHHHHHHHHHHhcchH
Confidence 999999999999999987 5788889999999998 6799999996443333444445555544333
No 50
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=9.1e-40 Score=365.85 Aligned_cols=348 Identities=19% Similarity=0.260 Sum_probs=253.3
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHHcC------CCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccH
Q 006824 235 QLMHAISKQGYEKPTSIQCQALPIILSG------RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTR 308 (630)
Q Consensus 235 ~l~~~l~~~~~~~~~~~Q~~~i~~il~g------~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr 308 (630)
.+.+.+...+| .||+.|..+++.++++ .+.+++|+||||||++|++|++..+. ++++++|++||+
T Consensus 224 ~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~--------~g~qvlilaPT~ 294 (630)
T TIGR00643 224 LLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE--------AGYQVALMAPTE 294 (630)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH--------cCCcEEEECCHH
Confidence 34455666788 7999999999999876 26899999999999999999988763 367899999999
Q ss_pred HHHHHHHHHHHHHhhhcCceEEEEECCCChHH---HHHHHHc-CCcEEEeChHHHHHHHHccccccCceeEEEecchhhh
Q 006824 309 ELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD---QFKELKA-GCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRM 384 (630)
Q Consensus 309 ~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~---~~~~l~~-~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~ 384 (630)
+||.|+++.+.+++...++++.+++|+.+... .+..+.. .++|||+||+.+.. ...+.++++|||||+|++
T Consensus 295 ~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~f 369 (630)
T TIGR00643 295 ILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHRF 369 (630)
T ss_pred HHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhhc
Confidence 99999999999999988999999999987654 3444444 47999999987754 345788999999999995
Q ss_pred hcCCcHHHHHHHHhhcC--CCCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCccccHHHHHH
Q 006824 385 FDLGFEPQIRSIVGQIR--PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLE 462 (630)
Q Consensus 385 ~~~~~~~~v~~i~~~l~--~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~ 462 (630)
... +...+..... ..+++++||||+.+....+ ....+.....+.........+...+. .. .....++.
T Consensus 370 g~~----qr~~l~~~~~~~~~~~~l~~SATp~prtl~l--~~~~~l~~~~i~~~p~~r~~i~~~~~--~~--~~~~~~~~ 439 (630)
T TIGR00643 370 GVE----QRKKLREKGQGGFTPHVLVMSATPIPRTLAL--TVYGDLDTSIIDELPPGRKPITTVLI--KH--DEKDIVYE 439 (630)
T ss_pred cHH----HHHHHHHhcccCCCCCEEEEeCCCCcHHHHH--HhcCCcceeeeccCCCCCCceEEEEe--Cc--chHHHHHH
Confidence 322 2222333322 2688999999987654333 22222211111111111223333222 11 12234444
Q ss_pred hccCC-CCCCCEEEEccch--------hhHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcc
Q 006824 463 KLPGM-IDDGDVLVFASKK--------TTVDEIESQLAQK--GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAA 531 (630)
Q Consensus 463 ~l~~~-~~~~~iLIF~~s~--------~~~~~l~~~L~~~--~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~ 531 (630)
.+... ....+++|||+.. ..+..+++.|... ++.+..+||+|++.+|..+++.|++|+.+|||||++++
T Consensus 440 ~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie 519 (630)
T TIGR00643 440 FIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIE 519 (630)
T ss_pred HHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceee
Confidence 44332 2356899999876 4466677777653 78899999999999999999999999999999999999
Q ss_pred cCCCCCCccEEEEeCCCC-CHHHHHHHhhhcccCCCCCeEEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHHHHHh
Q 006824 532 RGLDIKSIKSVVNFDIAR-DMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLAMK 607 (630)
Q Consensus 532 ~Gldi~~v~~VI~~~~p~-~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~~~~~l~~~l~~~~~~vp~~L~~la~~ 607 (630)
+|+|+|++++||+++.|. +...|.||+||+||.| +.|.|++++.........+.++.+......+...-.+|..+
T Consensus 520 ~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g-~~g~~il~~~~~~~~~~~~rl~~~~~~~dgf~iae~dl~~R 595 (630)
T TIGR00643 520 VGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGD-HQSYCLLVYKNPKSESAKKRLRVMADTLDGFVIAEEDLELR 595 (630)
T ss_pred cCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCC-CCcEEEEEECCCCCHHHHHHHHHHHhhcccHHHHHHHHhcC
Confidence 999999999999999986 6788899999999998 67999999943333334444566666555554444555443
No 51
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=6.2e-40 Score=361.26 Aligned_cols=340 Identities=23% Similarity=0.321 Sum_probs=273.2
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHH
Q 006824 232 FSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELA 311 (630)
Q Consensus 232 l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La 311 (630)
|++.+.+.+... |..|||.|.+|||.+.+|+|+|++||||||||+++.||+++.+.+........+-.+|||+|.|+|.
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn 86 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALN 86 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHH
Confidence 778888888887 9999999999999999999999999999999999999999999887423334567899999999999
Q ss_pred HHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHcc--ccccCceeEEEecchhhhhcCCc
Q 006824 312 HQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK--ALTMSRVTYLVLDEADRMFDLGF 389 (630)
Q Consensus 312 ~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~--~~~l~~i~~lVvDEah~~~~~~~ 389 (630)
..+...+..++...|+.+.+.+|.++..+..+...+.+||+|+||+.|.-++... .-.+.++.++||||.|.+.+...
T Consensus 87 ~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKR 166 (814)
T COG1201 87 NDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKR 166 (814)
T ss_pred HHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhcccc
Confidence 9999999999999999999999999988888888889999999999999888653 23588999999999999987766
Q ss_pred HHHHHHHHhhc---CCCCcEEEEeecccHHHHHHHHHHcCC--CeEEEEcccccccccceEEEEEcC--Cc----cccHH
Q 006824 390 EPQIRSIVGQI---RPDRQTLLFSATMPRKVEKLAREILSD--PVRVTVGEVGMANEDITQVVHVIP--SD----AEKLP 458 (630)
Q Consensus 390 ~~~v~~i~~~l---~~~~q~l~~SAT~~~~~~~l~~~~~~~--~~~i~~~~~~~~~~~i~q~~~~~~--~~----~~k~~ 458 (630)
+.++..-+..+ -+..|.|++|||..+. ...++.+.+. +..+... ......++.-..-... .. .....
T Consensus 167 G~~Lsl~LeRL~~l~~~~qRIGLSATV~~~-~~varfL~g~~~~~~Iv~~-~~~k~~~i~v~~p~~~~~~~~~~~~~~~~ 244 (814)
T COG1201 167 GVQLALSLERLRELAGDFQRIGLSATVGPP-EEVAKFLVGFGDPCEIVDV-SAAKKLEIKVISPVEDLIYDEELWAALYE 244 (814)
T ss_pred chhhhhhHHHHHhhCcccEEEeehhccCCH-HHHHHHhcCCCCceEEEEc-ccCCcceEEEEecCCccccccchhHHHHH
Confidence 66665444333 2388999999999754 5567666655 3333321 1122222221111111 00 11223
Q ss_pred HHHHhccCCCCCCCEEEEccchhhHHHHHHHHHhCC-CcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCC
Q 006824 459 WLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKG-FKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIK 537 (630)
Q Consensus 459 ~l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~~-~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~ 537 (630)
.+.+++++ ...+|||+||+..++.++..|++.+ ..+..+||.++.+.|..+.+.|++|+.+++|||+.++-||||.
T Consensus 245 ~i~~~v~~---~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG 321 (814)
T COG1201 245 RIAELVKK---HRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIG 321 (814)
T ss_pred HHHHHHhh---cCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccC
Confidence 33333433 3479999999999999999999986 8999999999999999999999999999999999999999999
Q ss_pred CccEEEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEecc
Q 006824 538 SIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ 577 (630)
Q Consensus 538 ~v~~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~ 577 (630)
+++.||+|+.|.+...++||+||+|+.-......+++...
T Consensus 322 ~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 322 DIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred CceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 9999999999999999999999999765344555555544
No 52
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=2.5e-39 Score=377.18 Aligned_cols=297 Identities=24% Similarity=0.317 Sum_probs=242.5
Q ss_pred CCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhh
Q 006824 244 GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (630)
Q Consensus 244 ~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~ 323 (630)
|+ .|+++|..++|.++.|+|++++||||+|||. |.++++..+. .+++++|||+|||+|+.|+++.+++++.
T Consensus 78 G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~-------~~g~~alIL~PTreLa~Qi~~~l~~l~~ 148 (1176)
T PRK09401 78 GS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLA-------KKGKKSYIIFPTRLLVEQVVEKLEKFGE 148 (1176)
T ss_pred CC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHH-------hcCCeEEEEeccHHHHHHHHHHHHHHhh
Confidence 65 8999999999999999999999999999996 5566555442 2378899999999999999999999999
Q ss_pred hcCceEEEEECCCC-----hHHHHHHHHc-CCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhc-----------
Q 006824 324 SHGIRVSAVYGGMS-----KLDQFKELKA-GCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFD----------- 386 (630)
Q Consensus 324 ~~~~~~~~~~gg~~-----~~~~~~~l~~-~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~----------- 386 (630)
..++.+..++|+.. ...+...+.. +++|+|+||++|.+.+. .+....+++|||||||+|++
T Consensus 149 ~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~ 226 (1176)
T PRK09401 149 KVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKNIDKLLYL 226 (1176)
T ss_pred hcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccchhhHHHh
Confidence 88888888887754 2333444554 58999999999998876 34556799999999999986
Q ss_pred CCcH-HHHHHHHhhcCC------------------------CCcEEEEeecccHH-HHHHHHHHcCCCeEEEEccccccc
Q 006824 387 LGFE-PQIRSIVGQIRP------------------------DRQTLLFSATMPRK-VEKLAREILSDPVRVTVGEVGMAN 440 (630)
Q Consensus 387 ~~~~-~~v~~i~~~l~~------------------------~~q~l~~SAT~~~~-~~~l~~~~~~~~~~i~~~~~~~~~ 440 (630)
+||. ..+..++..++. .+|+++||||+++. +.. .++.++..+.++......
T Consensus 227 lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~~~~~~~ 303 (1176)
T PRK09401 227 LGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVGSPVFYL 303 (1176)
T ss_pred CCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEecCccccc
Confidence 6785 678878777754 68999999999864 332 234555566666666666
Q ss_pred ccceEEEEEcCCccccHHHHHHhccCCCCCCCEEEEccchhh---HHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhh
Q 006824 441 EDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTT---VDEIESQLAQKGFKAAALHGDKDQASRMEILQKFK 517 (630)
Q Consensus 441 ~~i~q~~~~~~~~~~k~~~l~~~l~~~~~~~~iLIF~~s~~~---~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~ 517 (630)
.++.+.+.... .+...|..++... ..++||||++... ++.++++|...|+++..+||++ .+.++.|+
T Consensus 304 rnI~~~yi~~~---~k~~~L~~ll~~l--~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~ 373 (1176)
T PRK09401 304 RNIVDSYIVDE---DSVEKLVELVKRL--GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFE 373 (1176)
T ss_pred CCceEEEEEcc---cHHHHHHHHHHhc--CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHH
Confidence 77888776554 5666777776554 3589999999887 9999999999999999999999 23469999
Q ss_pred cCCceEEEE----cCCcccCCCCCC-ccEEEEeCCCC------CHHHHHHHhhhcccC
Q 006824 518 SGVYHVLIA----TDVAARGLDIKS-IKSVVNFDIAR------DMDMHVHRIGRTGRA 564 (630)
Q Consensus 518 ~g~~~VLva----T~~~~~Gldi~~-v~~VI~~~~p~------~~~~y~QriGR~gR~ 564 (630)
+|+++|||| |++++||||+|+ +++|||||+|. ....|.||+||+...
T Consensus 374 ~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~~ 431 (1176)
T PRK09401 374 EGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLSL 431 (1176)
T ss_pred CCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHhh
Confidence 999999999 689999999999 89999999998 678899999999754
No 53
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=6.4e-39 Score=374.27 Aligned_cols=303 Identities=21% Similarity=0.273 Sum_probs=226.6
Q ss_pred EEeCCCChHHHHHHHHHHHHHhcCCcc-----cccCCCeEEEEcccHHHHHHHHHHHHHHhh------------hcCceE
Q 006824 267 GIAKTGSGKTAAFVLPMIVHIMDQPEL-----QKEEGPIGVICAPTRELAHQIYLETKKFAK------------SHGIRV 329 (630)
Q Consensus 267 ~~a~TGsGKT~~~~l~~l~~~~~~~~~-----~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~------------~~~~~~ 329 (630)
+++|||||||++|.+|++..++.++.. ...++.++|||+|+++|+.|+.+.++..+. ..++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 479999999999999999999865311 123468999999999999999998875321 236889
Q ss_pred EEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHcc-ccccCceeEEEecchhhhhcCCcHHHH----HHHHhhcCCCC
Q 006824 330 SAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK-ALTMSRVTYLVLDEADRMFDLGFEPQI----RSIVGQIRPDR 404 (630)
Q Consensus 330 ~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~-~~~l~~i~~lVvDEah~~~~~~~~~~v----~~i~~~l~~~~ 404 (630)
...+|+.+..++.+.+.+.++|||+||++|..++... ...++++++|||||+|.|.+..++.++ ..+...+....
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 9999999888877777778999999999999887653 346899999999999999876555554 44444556678
Q ss_pred cEEEEeecccHHHHHHHHHHcCC-CeEEEEcccccccccceEEEEEcCCcc-------------------ccHHHHH-Hh
Q 006824 405 QTLLFSATMPRKVEKLAREILSD-PVRVTVGEVGMANEDITQVVHVIPSDA-------------------EKLPWLL-EK 463 (630)
Q Consensus 405 q~l~~SAT~~~~~~~l~~~~~~~-~~~i~~~~~~~~~~~i~q~~~~~~~~~-------------------~k~~~l~-~~ 463 (630)
|+|+||||+++ .+.+++++... |+.+.. ........+... ....... .....+. ..
T Consensus 161 QrIgLSATI~n-~eevA~~L~g~~pv~Iv~-~~~~r~~~l~v~-vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~i 237 (1490)
T PRK09751 161 QRIGLSATVRS-ASDVAAFLGGDRPVTVVN-PPAMRHPQIRIV-VPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGI 237 (1490)
T ss_pred eEEEEEeeCCC-HHHHHHHhcCCCCEEEEC-CCCCcccceEEE-EecCchhhccccccccccccchhhhhhhhHHHHHHH
Confidence 99999999987 46677655443 555532 212112222211 1111000 0011111 12
Q ss_pred ccCCCCCCCEEEEccchhhHHHHHHHHHhCC---------------------------------CcEEEEeCCCCHHHHH
Q 006824 464 LPGMIDDGDVLVFASKKTTVDEIESQLAQKG---------------------------------FKAAALHGDKDQASRM 510 (630)
Q Consensus 464 l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~~---------------------------------~~~~~ihg~~~~~~r~ 510 (630)
+.......++||||||+..|+.++..|.+.. +.+.++||++++.+|.
T Consensus 238 l~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~ 317 (1490)
T PRK09751 238 LDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRA 317 (1490)
T ss_pred HHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHH
Confidence 2222245789999999999999999997531 1257899999999999
Q ss_pred HHHHHhhcCCceEEEEcCCcccCCCCCCccEEEEeCCCCCHHHHHHHhhhcccCCCCCeEEE
Q 006824 511 EILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAY 572 (630)
Q Consensus 511 ~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~ 572 (630)
.+.+.|++|++++||||+.+++||||+++++||+|+.|.++..|+||+||+||.....+.++
T Consensus 318 ~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gl 379 (1490)
T PRK09751 318 ITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGL 379 (1490)
T ss_pred HHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEE
Confidence 99999999999999999999999999999999999999999999999999999742334444
No 54
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=9.3e-39 Score=340.16 Aligned_cols=325 Identities=22% Similarity=0.387 Sum_probs=262.1
Q ss_pred cCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHh
Q 006824 243 QGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (630)
Q Consensus 243 ~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 322 (630)
.||..++|-|.++|..+++|+|+++..|||.||+++|.+|++.. .| .+|||.|..+|....+..++..
T Consensus 13 fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~----------~G-~TLVVSPLiSLM~DQV~~l~~~- 80 (590)
T COG0514 13 FGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL----------EG-LTLVVSPLISLMKDQVDQLEAA- 80 (590)
T ss_pred hCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc----------CC-CEEEECchHHHHHHHHHHHHHc-
Confidence 48999999999999999999999999999999999999999865 13 4899999999999998888887
Q ss_pred hhcCceEEEEECCCChHHHH---HHHHcC-CcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCC--cHHHHHHH
Q 006824 323 KSHGIRVSAVYGGMSKLDQF---KELKAG-CEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG--FEPQIRSI 396 (630)
Q Consensus 323 ~~~~~~~~~~~gg~~~~~~~---~~l~~~-~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~--~~~~v~~i 396 (630)
|+.+.++.+..+..+.. ..+..| .++++-+|++|..-.-.+.+.-..+.++||||||++.+|| |.+.+..+
T Consensus 81 ---Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~l 157 (590)
T COG0514 81 ---GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRL 157 (590)
T ss_pred ---CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHH
Confidence 88988888887765543 333333 7999999999975433333335578999999999999998 88887766
Q ss_pred H---hhcCCCCcEEEEeecccHHHHHHHHHHcCC--CeEEEEcccccccccceEEEEEcCCccccHHHHHHhccCCCCCC
Q 006824 397 V---GQIRPDRQTLLFSATMPRKVEKLAREILSD--PVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDG 471 (630)
Q Consensus 397 ~---~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~--~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~~~~ 471 (630)
- ..+ ++.+++++|||.++.+...+...+.- +..+. . ....+++...+........+..++.+.+ ....+
T Consensus 158 g~l~~~~-~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~-~--sfdRpNi~~~v~~~~~~~~q~~fi~~~~--~~~~~ 231 (590)
T COG0514 158 GRLRAGL-PNPPVLALTATATPRVRDDIREQLGLQDANIFR-G--SFDRPNLALKVVEKGEPSDQLAFLATVL--PQLSK 231 (590)
T ss_pred HHHHhhC-CCCCEEEEeCCCChHHHHHHHHHhcCCCcceEE-e--cCCCchhhhhhhhcccHHHHHHHHHhhc--cccCC
Confidence 4 334 47899999999999988777665542 32222 1 2223333333332222334444444311 22356
Q ss_pred CEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEEEEeCCCCCH
Q 006824 472 DVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDM 551 (630)
Q Consensus 472 ~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~~~ 551 (630)
..||||.|+..++.++..|...|+.+..+|++|+..+|..+.+.|.+++.+|+|||.++++|||-|+|++||||++|.++
T Consensus 232 ~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~ 311 (590)
T COG0514 232 SGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSI 311 (590)
T ss_pred CeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcccCCCCCeEEEEEeccccHHHHHHHHHH
Q 006824 552 DMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNS 589 (630)
Q Consensus 552 ~~y~QriGR~gR~g~~~g~~~~l~~~~d~~~~~~l~~~ 589 (630)
+.|.|-+||+||.| .+..|++|+++.|......+...
T Consensus 312 EsYyQE~GRAGRDG-~~a~aill~~~~D~~~~~~~i~~ 348 (590)
T COG0514 312 ESYYQETGRAGRDG-LPAEAILLYSPEDIRWQRYLIEQ 348 (590)
T ss_pred HHHHHHHhhccCCC-CcceEEEeeccccHHHHHHHHHh
Confidence 99999999999999 78999999999998776665543
No 55
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=1.1e-38 Score=351.81 Aligned_cols=313 Identities=18% Similarity=0.218 Sum_probs=233.6
Q ss_pred HHHHHHHHHHHcCCCEEEEeCCCChHHHH---------HHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHH
Q 006824 250 SIQCQALPIILSGRDIIGIAKTGSGKTAA---------FVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKK 320 (630)
Q Consensus 250 ~~Q~~~i~~il~g~d~l~~a~TGsGKT~~---------~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~ 320 (630)
.+|.++++.+++|+++|++|+||||||.+ |++|.+..+.... ....++.++|++|||+||.|+...+.+
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~--~~~~~~~ilvt~PrreLa~qi~~~i~~ 244 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID--PNFIERPIVLSLPRVALVRLHSITLLK 244 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc--cccCCcEEEEECcHHHHHHHHHHHHHH
Confidence 58999999999999999999999999986 3334444332110 022356799999999999999998877
Q ss_pred Hhhh---cCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCcHHHHHHHH
Q 006824 321 FAKS---HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIV 397 (630)
Q Consensus 321 ~~~~---~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~ 397 (630)
..+. .+..+.+.+||... ........+.+|+|+|++. ....++.+++|||||||.+..++ +.+..++
T Consensus 245 ~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L-------~l~~L~~v~~VVIDEaHEr~~~~--DllL~ll 314 (675)
T PHA02653 245 SLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKL-------TLNKLFDYGTVIIDEVHEHDQIG--DIIIAVA 314 (675)
T ss_pred HhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCcc-------cccccccCCEEEccccccCccch--hHHHHHH
Confidence 6543 25677888998763 2222233468999999752 11257899999999999987664 4555555
Q ss_pred hhc-CCCCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCc--------cccHHHHHHhccCC-
Q 006824 398 GQI-RPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSD--------AEKLPWLLEKLPGM- 467 (630)
Q Consensus 398 ~~l-~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~--------~~k~~~l~~~l~~~- 467 (630)
..+ +..+|+++||||++.++..+ ..++.+|..+.+.. .....+.+.+...... ......+...+...
T Consensus 315 k~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~g--rt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~ 391 (675)
T PHA02653 315 RKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPG--GTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYT 391 (675)
T ss_pred HHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCC--CcCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhh
Confidence 544 33469999999999888776 57888888877643 2334555554322110 01111223333222
Q ss_pred -CCCCCEEEEccchhhHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHHh-hcCCceEEEEcCCcccCCCCCCccEEE
Q 006824 468 -IDDGDVLVFASKKTTVDEIESQLAQK--GFKAAALHGDKDQASRMEILQKF-KSGVYHVLIATDVAARGLDIKSIKSVV 543 (630)
Q Consensus 468 -~~~~~iLIF~~s~~~~~~l~~~L~~~--~~~~~~ihg~~~~~~r~~~~~~F-~~g~~~VLvaT~~~~~Gldi~~v~~VI 543 (630)
...+.+||||+++..++.+++.|.+. ++.+..+||++++. .++++.| ++|+.+|||||++++||||||+|++||
T Consensus 392 ~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VI 469 (675)
T PHA02653 392 PPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVY 469 (675)
T ss_pred cccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEE
Confidence 13468999999999999999999887 79999999999985 4667777 789999999999999999999999999
Q ss_pred EeC---CCC---------CHHHHHHHhhhcccCCCCCeEEEEEeccccHH
Q 006824 544 NFD---IAR---------DMDMHVHRIGRTGRAGDKDGTAYTLVTQKEAR 581 (630)
Q Consensus 544 ~~~---~p~---------~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~ 581 (630)
++| .|. |.+.|+||+||+||.. +|.|+.|+++.+..
T Consensus 470 D~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~~--~G~c~rLyt~~~~~ 517 (675)
T PHA02653 470 DTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRVS--PGTYVYFYDLDLLK 517 (675)
T ss_pred ECCCccCCCcccCcccccCHHHHHHhccCcCCCC--CCeEEEEECHHHhH
Confidence 998 555 7889999999999995 79999999987643
No 56
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=9.1e-38 Score=339.11 Aligned_cols=318 Identities=19% Similarity=0.222 Sum_probs=248.3
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhc
Q 006824 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (630)
Q Consensus 246 ~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~ 325 (630)
..|+|+|..++|.++.|+ |..+.||+|||++|++|++.+.+ .|+.++||+||++||.|.++++.+++..+
T Consensus 102 ~~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al--------~G~~v~VvTptreLA~qdae~~~~l~~~l 171 (656)
T PRK12898 102 QRHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAAL--------AGLPVHVITVNDYLAERDAELMRPLYEAL 171 (656)
T ss_pred CCCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhh--------cCCeEEEEcCcHHHHHHHHHHHHHHHhhc
Confidence 368999999999999999 99999999999999999998764 37789999999999999999999999999
Q ss_pred CceEEEEECCCChHHHHHHHHcCCcEEEeChHHH-HHHHHccc-------------------------cccCceeEEEec
Q 006824 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRL-IDMLKMKA-------------------------LTMSRVTYLVLD 379 (630)
Q Consensus 326 ~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L-~~~l~~~~-------------------------~~l~~i~~lVvD 379 (630)
|+++.+++||.+. +.+....+++|+++|...| .++|..+. ...+.+.++|||
T Consensus 172 Glsv~~i~gg~~~--~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvD 249 (656)
T PRK12898 172 GLTVGCVVEDQSP--DERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVD 249 (656)
T ss_pred CCEEEEEeCCCCH--HHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEee
Confidence 9999999999764 3445556899999999877 44553321 123568899999
Q ss_pred chhhhhc---------------C---CcHHH--------------------------------HHHHHhh----------
Q 006824 380 EADRMFD---------------L---GFEPQ--------------------------------IRSIVGQ---------- 399 (630)
Q Consensus 380 Eah~~~~---------------~---~~~~~--------------------------------v~~i~~~---------- 399 (630)
|+|.++- . .+... ++.++..
T Consensus 250 EvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~ 329 (656)
T PRK12898 250 EADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVR 329 (656)
T ss_pred cccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccchH
Confidence 9998621 0 00000 1111000
Q ss_pred --------cC------C-------------------------------------------------------------CC
Q 006824 400 --------IR------P-------------------------------------------------------------DR 404 (630)
Q Consensus 400 --------l~------~-------------------------------------------------------------~~ 404 (630)
+. . ..
T Consensus 330 ~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~ 409 (656)
T PRK12898 330 REELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYL 409 (656)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhH
Confidence 00 0 03
Q ss_pred cEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCccccHHHHHHhccCCC-CCCCEEEEccchhhH
Q 006824 405 QTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTV 483 (630)
Q Consensus 405 q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~-~~~~iLIF~~s~~~~ 483 (630)
++.+||||.+.....+...|..+++.+...... .....+.+ ++.....|+..|...+.... ...++||||+++..+
T Consensus 410 kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~--~r~~~~~~-v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~s 486 (656)
T PRK12898 410 RLAGMTGTAREVAGELWSVYGLPVVRIPTNRPS--QRRHLPDE-VFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAAS 486 (656)
T ss_pred HHhcccCcChHHHHHHHHHHCCCeEEeCCCCCc--cceecCCE-EEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHH
Confidence 678899999988888888888887665443322 11222323 33345678888888886642 246899999999999
Q ss_pred HHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCC---Ccc-----EEEEeCCCCCHHHHH
Q 006824 484 DEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIK---SIK-----SVVNFDIARDMDMHV 555 (630)
Q Consensus 484 ~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~---~v~-----~VI~~~~p~~~~~y~ 555 (630)
+.++..|...|+++..|||.++ +|+..+..|..+...|+|||++++||+||+ +|. +||+|+.|.+...|.
T Consensus 487 e~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~ 564 (656)
T PRK12898 487 ERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDR 564 (656)
T ss_pred HHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHH
Confidence 9999999999999999999854 566666777777778999999999999999 666 999999999999999
Q ss_pred HHhhhcccCCCCCeEEEEEeccccHH
Q 006824 556 HRIGRTGRAGDKDGTAYTLVTQKEAR 581 (630)
Q Consensus 556 QriGR~gR~g~~~g~~~~l~~~~d~~ 581 (630)
||+||+||.| .+|.+++|++.+|.-
T Consensus 565 hr~GRTGRqG-~~G~s~~~is~eD~l 589 (656)
T PRK12898 565 QLAGRCGRQG-DPGSYEAILSLEDDL 589 (656)
T ss_pred HhcccccCCC-CCeEEEEEechhHHH
Confidence 9999999999 689999999988743
No 57
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=9.5e-38 Score=370.91 Aligned_cols=328 Identities=21% Similarity=0.259 Sum_probs=251.9
Q ss_pred HHHHHHH-cCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHH
Q 006824 236 LMHAISK-QGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQI 314 (630)
Q Consensus 236 l~~~l~~-~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~ 314 (630)
+.+.+.+ .|| .|+++|++++|.+++|+|++++||||+|||++++++++... ..++++|||+||++|+.|+
T Consensus 68 ~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~--------~~g~~aLVl~PTreLa~Qi 138 (1638)
T PRK14701 68 FEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLA--------LKGKKCYIILPTTLLVKQT 138 (1638)
T ss_pred HHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHH--------hcCCeEEEEECHHHHHHHH
Confidence 4455555 688 69999999999999999999999999999996666655442 1367899999999999999
Q ss_pred HHHHHHHhhhc--CceEEEEECCCChHHHH---HHHHcC-CcEEEeChHHHHHHHHccccccCceeEEEecchhhhhc--
Q 006824 315 YLETKKFAKSH--GIRVSAVYGGMSKLDQF---KELKAG-CEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFD-- 386 (630)
Q Consensus 315 ~~~~~~~~~~~--~~~~~~~~gg~~~~~~~---~~l~~~-~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~-- 386 (630)
++.+..++... ++++..++|+.+..++. ..+..| ++|+|+||++|.+.+... ....++++||||||+|++
T Consensus 139 ~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l--~~~~i~~iVVDEAD~ml~~~ 216 (1638)
T PRK14701 139 VEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM--KHLKFDFIFVDDVDAFLKAS 216 (1638)
T ss_pred HHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH--hhCCCCEEEEECceeccccc
Confidence 99999998765 45677888988876653 345554 899999999998876532 126799999999999986
Q ss_pred ---------CCcHHHHHH----HHh----------------------hcCCCCc-EEEEeecccHHHHHHHHHHcCCCeE
Q 006824 387 ---------LGFEPQIRS----IVG----------------------QIRPDRQ-TLLFSATMPRKVEKLAREILSDPVR 430 (630)
Q Consensus 387 ---------~~~~~~v~~----i~~----------------------~l~~~~q-~l~~SAT~~~~~~~l~~~~~~~~~~ 430 (630)
+||.+.+.. ++. .++..+| ++++|||+++.- ....++.++..
T Consensus 217 knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~--~~~~l~~~~l~ 294 (1638)
T PRK14701 217 KNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKG--DRVKLYRELLG 294 (1638)
T ss_pred cccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchh--HHHHHhhcCeE
Confidence 578877764 332 2334555 677999998641 12234567777
Q ss_pred EEEcccccccccceEEEEEcCCccccHHHHHHhccCCCCCCCEEEEccchhh---HHHHHHHHHhCCCcEEEEeCCCCHH
Q 006824 431 VTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTT---VDEIESQLAQKGFKAAALHGDKDQA 507 (630)
Q Consensus 431 i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~~~~~iLIF~~s~~~---~~~l~~~L~~~~~~~~~ihg~~~~~ 507 (630)
+.++........+.+.+..... ..+ ..|..++... ..++||||++... |+.++.+|...|+++..+||+
T Consensus 295 f~v~~~~~~lr~i~~~yi~~~~-~~k-~~L~~ll~~~--g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~---- 366 (1638)
T PRK14701 295 FEVGSGRSALRNIVDVYLNPEK-IIK-EHVRELLKKL--GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK---- 366 (1638)
T ss_pred EEecCCCCCCCCcEEEEEECCH-HHH-HHHHHHHHhC--CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch----
Confidence 8877766666778777765532 223 4666666554 4589999999875 589999999999999999995
Q ss_pred HHHHHHHHhhcCCceEEEEc----CCcccCCCCCC-ccEEEEeCCCC---CHHHHHHHh-------------hhcccCCC
Q 006824 508 SRMEILQKFKSGVYHVLIAT----DVAARGLDIKS-IKSVVNFDIAR---DMDMHVHRI-------------GRTGRAGD 566 (630)
Q Consensus 508 ~r~~~~~~F~~g~~~VLvaT----~~~~~Gldi~~-v~~VI~~~~p~---~~~~y~Qri-------------GR~gR~g~ 566 (630)
|..+++.|++|+++||||| ++++||||+|+ |++|||||+|. ++..|.|-. ||+||.|
T Consensus 367 -R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g- 444 (1638)
T PRK14701 367 -NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEG- 444 (1638)
T ss_pred -HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccC-
Confidence 8899999999999999999 48999999999 99999999999 887666654 9999998
Q ss_pred CCeEEEEEeccccHHHHHHH
Q 006824 567 KDGTAYTLVTQKEARFAGEL 586 (630)
Q Consensus 567 ~~g~~~~l~~~~d~~~~~~l 586 (630)
..+.++..+...+...+.++
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~ 464 (1638)
T PRK14701 445 IPIEGVLDVFPEDVEFLRSI 464 (1638)
T ss_pred CcchhHHHhHHHHHHHHHHH
Confidence 45566544444444444433
No 58
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=8.4e-39 Score=316.19 Aligned_cols=278 Identities=34% Similarity=0.508 Sum_probs=225.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHhhhc---CceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCcee
Q 006824 298 GPIGVICAPTRELAHQIYLETKKFAKSH---GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVT 374 (630)
Q Consensus 298 ~~~vLil~Ptr~La~Q~~~~~~~~~~~~---~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~ 374 (630)
.|.++|+-|.|+|+.|.++.+++|-... .++..++.||.-...|...+..|.+|+|+||++|...+..+...+..+.
T Consensus 286 ap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~cr 365 (725)
T KOG0349|consen 286 APEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCR 365 (725)
T ss_pred CcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeE
Confidence 4889999999999999999877775543 4577788999999999999999999999999999999999999999999
Q ss_pred EEEecchhhhhcCCcHHHHHHHHhhcCC------CCcEEEEeecccH-HHHHHHHHHcCCCeEEEEcccccccccceEEE
Q 006824 375 YLVLDEADRMFDLGFEPQIRSIVGQIRP------DRQTLLFSATMPR-KVEKLAREILSDPVRVTVGEVGMANEDITQVV 447 (630)
Q Consensus 375 ~lVvDEah~~~~~~~~~~v~~i~~~l~~------~~q~l~~SAT~~~-~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~ 447 (630)
++|+|||+.++..++.+.+..+...++. ..|.+++|||+.. ++..+....++-|.-+...........+.+.+
T Consensus 366 FlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhvv 445 (725)
T KOG0349|consen 366 FLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHVV 445 (725)
T ss_pred EEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhccce
Confidence 9999999999999999999999888763 4689999999853 34556777777777766555444444433333
Q ss_pred EEcCCc-cccHH----------------------------HHHHhccCC--------CCCCCEEEEccchhhHHHHHHHH
Q 006824 448 HVIPSD-AEKLP----------------------------WLLEKLPGM--------IDDGDVLVFASKKTTVDEIESQL 490 (630)
Q Consensus 448 ~~~~~~-~~k~~----------------------------~l~~~l~~~--------~~~~~iLIF~~s~~~~~~l~~~L 490 (630)
..+... ...+. .-+.+++.- -.-.+.||||.++.+|+.|.++|
T Consensus 446 ~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~ 525 (725)
T KOG0349|consen 446 KLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMM 525 (725)
T ss_pred eecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHH
Confidence 222110 01111 111111110 02357999999999999999999
Q ss_pred HhCC---CcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEEEEeCCCCCHHHHHHHhhhcccCCCC
Q 006824 491 AQKG---FKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDK 567 (630)
Q Consensus 491 ~~~~---~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~QriGR~gR~g~~ 567 (630)
.+.| ++|+++||+..+.+|.+.++.|+.+.+++||||++++||+||.++-.+||.-+|.....|+|||||+||+. .
T Consensus 526 ~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgrae-r 604 (725)
T KOG0349|consen 526 NQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAE-R 604 (725)
T ss_pred HHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhh-h
Confidence 9874 79999999999999999999999999999999999999999999999999999999999999999999987 6
Q ss_pred CeEEEEEec
Q 006824 568 DGTAYTLVT 576 (630)
Q Consensus 568 ~g~~~~l~~ 576 (630)
.|.++.++.
T Consensus 605 mglaislva 613 (725)
T KOG0349|consen 605 MGLAISLVA 613 (725)
T ss_pred cceeEEEee
Confidence 789988864
No 59
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=1.6e-37 Score=339.47 Aligned_cols=306 Identities=16% Similarity=0.169 Sum_probs=223.0
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhh
Q 006824 245 YEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS 324 (630)
Q Consensus 245 ~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~ 324 (630)
...|+++|.++++.++.++++++++|||+|||+++.+.+ ..+... ...++|||+||++|+.||.+.+.++...
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~-~~~~~~------~~~~vLilvpt~eL~~Q~~~~l~~~~~~ 184 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLS-RYYLEN------YEGKVLIIVPTTSLVTQMIDDFVDYRLF 184 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH-HHHHhc------CCCeEEEEECcHHHHHHHHHHHHHhccc
Confidence 357999999999999999999999999999998754422 222221 2347999999999999999999998754
Q ss_pred cCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCcHHHHHHHHhhcCCCC
Q 006824 325 HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDR 404 (630)
Q Consensus 325 ~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~ 404 (630)
....+..+++|.... .+.+|+|+||+++..... ..+..+++||+||||++.. ..+..++..+++.+
T Consensus 185 ~~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~----~~~~~il~~~~~~~ 250 (501)
T PHA02558 185 PREAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTG----KSLTSIITKLDNCK 250 (501)
T ss_pred cccceeEEecCcccC-------CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccc----hhHHHHHHhhhccc
Confidence 344555666765543 347999999999876432 2467899999999999874 34567777777778
Q ss_pred cEEEEeecccHHHHHH--HHHHcCCCeEEEEcccccc------cccceEE--------------------EEEcCCcccc
Q 006824 405 QTLLFSATMPRKVEKL--AREILSDPVRVTVGEVGMA------NEDITQV--------------------VHVIPSDAEK 456 (630)
Q Consensus 405 q~l~~SAT~~~~~~~l--~~~~~~~~~~i~~~~~~~~------~~~i~q~--------------------~~~~~~~~~k 456 (630)
++++||||+....... ...+++ |+...+...... ...+... +..+.....+
T Consensus 251 ~~lGLTATp~~~~~~~~~~~~~fG-~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~R 329 (501)
T PHA02558 251 FKFGLTGSLRDGKANILQYVGLFG-DIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKR 329 (501)
T ss_pred eEEEEeccCCCccccHHHHHHhhC-CceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHH
Confidence 9999999997532211 112222 222221110000 0000000 0001111223
Q ss_pred HHHHHHhccCCC-CCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEc-CCcccCC
Q 006824 457 LPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIAT-DVAARGL 534 (630)
Q Consensus 457 ~~~l~~~l~~~~-~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT-~~~~~Gl 534 (630)
...+...+.... .+.++||||++..+++.+++.|...+.++..+||++++.+|..+++.|++|+..||||| +++++|+
T Consensus 330 n~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~ 409 (501)
T PHA02558 330 NKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGI 409 (501)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceecccc
Confidence 333333333222 34689999999999999999999999999999999999999999999999999999998 8999999
Q ss_pred CCCCccEEEEeCCCCCHHHHHHHhhhcccCCCCCeEEE
Q 006824 535 DIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAY 572 (630)
Q Consensus 535 di~~v~~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~ 572 (630)
|+|++++||++.++.+...|+||+||++|.+..+..++
T Consensus 410 Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~ 447 (501)
T PHA02558 410 SIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIAT 447 (501)
T ss_pred ccccccEEEEecCCcchhhhhhhhhccccCCCCCceEE
Confidence 99999999999999999999999999999984333333
No 60
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=3e-37 Score=325.83 Aligned_cols=302 Identities=20% Similarity=0.228 Sum_probs=213.0
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChH----
Q 006824 264 DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKL---- 339 (630)
Q Consensus 264 d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~---- 339 (630)
++++++|||||||++|++|++..+.. ..+.+++|++|+++|+.|+++.+..++. -.+..++++....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~------~~~~~ii~v~P~~~L~~q~~~~l~~~f~---~~~~~~~~~~~~~~~~~ 71 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS------QKADRVIIALPTRATINAMYRRAKELFG---SNLGLLHSSSSFKRIKE 71 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh------CCCCeEEEEeehHHHHHHHHHHHHHHhC---cccEEeeccHHHHHHhc
Confidence 58999999999999999999987543 2366899999999999999999999753 2344444432210
Q ss_pred -------HH-HHHH------HcCCcEEEeChHHHHHHHHccc----ccc--CceeEEEecchhhhhcCCcHHHHHHHHhh
Q 006824 340 -------DQ-FKEL------KAGCEIVIATPGRLIDMLKMKA----LTM--SRVTYLVLDEADRMFDLGFEPQIRSIVGQ 399 (630)
Q Consensus 340 -------~~-~~~l------~~~~dIiv~Tp~~L~~~l~~~~----~~l--~~i~~lVvDEah~~~~~~~~~~v~~i~~~ 399 (630)
.. .... .-.++|+|+||+.+...+.... ..+ ...++||+||+|.+.++++.. +..++..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~ 150 (358)
T TIGR01587 72 MGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEV 150 (358)
T ss_pred cCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHH
Confidence 00 0111 1136899999999988765421 111 123799999999998765443 5555555
Q ss_pred cC-CCCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEE-cCCccccHHHHHHhccCCCCCCCEEEEc
Q 006824 400 IR-PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHV-IPSDAEKLPWLLEKLPGMIDDGDVLVFA 477 (630)
Q Consensus 400 l~-~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~-~~~~~~k~~~l~~~l~~~~~~~~iLIF~ 477 (630)
+. .+.|+++||||+|..+..++..+...+.......... .....+.+.. ......+...+..++......+++||||
T Consensus 151 l~~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~ 229 (358)
T TIGR01587 151 LKDNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEE-RRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIV 229 (358)
T ss_pred HHHcCCCEEEEecCchHHHHHHHhcCCCcccccCCCCccc-cccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEE
Confidence 54 5789999999999877777665543321111111000 0011122211 1122234445554444334567999999
Q ss_pred cchhhHHHHHHHHHhCCC--cEEEEeCCCCHHHHHHH----HHHhhcCCceEEEEcCCcccCCCCCCccEEEEeCCCCCH
Q 006824 478 SKKTTVDEIESQLAQKGF--KAAALHGDKDQASRMEI----LQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDM 551 (630)
Q Consensus 478 ~s~~~~~~l~~~L~~~~~--~~~~ihg~~~~~~r~~~----~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~~~ 551 (630)
+++..++.++..|.+.+. .+..+||++++.+|.++ ++.|++|+..|||||+++++|+||+ ++.||++..| +
T Consensus 230 ~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~ 306 (358)
T TIGR01587 230 NTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--I 306 (358)
T ss_pred CCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--H
Confidence 999999999999988765 59999999999999764 8899999999999999999999995 8899998766 8
Q ss_pred HHHHHHhhhcccCCCCCe---EEEEEecccc
Q 006824 552 DMHVHRIGRTGRAGDKDG---TAYTLVTQKE 579 (630)
Q Consensus 552 ~~y~QriGR~gR~g~~~g---~~~~l~~~~d 579 (630)
..|+||+||+||.|.+.| .+++|....+
T Consensus 307 ~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 307 DSLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred HHHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 899999999999984444 7777766443
No 61
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=4.7e-37 Score=346.87 Aligned_cols=305 Identities=21% Similarity=0.281 Sum_probs=235.9
Q ss_pred HHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHH-HhhhcCceE
Q 006824 251 IQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKK-FAKSHGIRV 329 (630)
Q Consensus 251 ~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~-~~~~~~~~~ 329 (630)
+-.+.+..+.+++++|++|+||||||.+|.++++.+.. .+++++|+.|||++|.|++..+.+ +....|..+
T Consensus 6 ~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~--------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~V 77 (819)
T TIGR01970 6 VLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG--------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTV 77 (819)
T ss_pred HHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc--------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEE
Confidence 34456677778899999999999999999999987752 246799999999999999988754 333445666
Q ss_pred EEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchh-hhhcCCcHHH-HHHHHhhcCCCCcEE
Q 006824 330 SAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEAD-RMFDLGFEPQ-IRSIVGQIRPDRQTL 407 (630)
Q Consensus 330 ~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah-~~~~~~~~~~-v~~i~~~l~~~~q~l 407 (630)
.+.+++... ...+.+|+|+||+.|.+++... ..++++++|||||+| ++++.++.-. +..+...++++.|+|
T Consensus 78 Gy~vr~~~~------~s~~t~I~v~T~G~Llr~l~~d-~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlI 150 (819)
T TIGR01970 78 GYRVRGENK------VSRRTRLEVVTEGILTRMIQDD-PELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKIL 150 (819)
T ss_pred EEEEccccc------cCCCCcEEEECCcHHHHHHhhC-cccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEE
Confidence 655554332 2345789999999999988764 468999999999999 5777665433 345666778899999
Q ss_pred EEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCccccH-----HHHHHhccCCCCCCCEEEEccchhh
Q 006824 408 LFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKL-----PWLLEKLPGMIDDGDVLVFASKKTT 482 (630)
Q Consensus 408 ~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~-----~~l~~~l~~~~~~~~iLIF~~s~~~ 482 (630)
+||||++... +..++.++..+.+... ...+.+.+..... ..++ ..+...+.. ..+.+|||+++..+
T Consensus 151 lmSATl~~~~---l~~~l~~~~vI~~~gr---~~pVe~~y~~~~~-~~~~~~~v~~~l~~~l~~--~~g~iLVFlpg~~e 221 (819)
T TIGR01970 151 AMSATLDGER---LSSLLPDAPVVESEGR---SFPVEIRYLPLRG-DQRLEDAVSRAVEHALAS--ETGSILVFLPGQAE 221 (819)
T ss_pred EEeCCCCHHH---HHHHcCCCcEEEecCc---ceeeeeEEeecch-hhhHHHHHHHHHHHHHHh--cCCcEEEEECCHHH
Confidence 9999998653 4567766544444322 2234444443322 2222 222333322 35789999999999
Q ss_pred HHHHHHHHHh---CCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEEEEeCCCCC---------
Q 006824 483 VDEIESQLAQ---KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARD--------- 550 (630)
Q Consensus 483 ~~~l~~~L~~---~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~~--------- 550 (630)
++.++..|.. .++.+..+||++++.+|.++++.|.+|+.+|||||+++++||||++|++||+++.|..
T Consensus 222 I~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~ 301 (819)
T TIGR01970 222 IRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGI 301 (819)
T ss_pred HHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCC
Confidence 9999999987 4789999999999999999999999999999999999999999999999999998753
Q ss_pred ---------HHHHHHHhhhcccCCCCCeEEEEEeccccHH
Q 006824 551 ---------MDMHVHRIGRTGRAGDKDGTAYTLVTQKEAR 581 (630)
Q Consensus 551 ---------~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~ 581 (630)
...|.||.||+||.+ +|.||.|+++.+..
T Consensus 302 ~~L~~~~iSkasa~QR~GRAGR~~--~G~cyrL~t~~~~~ 339 (819)
T TIGR01970 302 TRLETVRISQASATQRAGRAGRLE--PGVCYRLWSEEQHQ 339 (819)
T ss_pred ceeeEEEECHHHHHhhhhhcCCCC--CCEEEEeCCHHHHH
Confidence 345899999999995 79999999987643
No 62
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=1.5e-37 Score=317.49 Aligned_cols=337 Identities=20% Similarity=0.299 Sum_probs=275.7
Q ss_pred cccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEc
Q 006824 227 FEDCGFSTQLMHAISKQGYEKPTSIQCQALPI-ILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICA 305 (630)
Q Consensus 227 ~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~-il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~ 305 (630)
.+++.+++++.+.|+..|+..+.|+|.-++.. ++.|+|.+++.+|+||||++.-++-+..++.. |.+.|+|+
T Consensus 196 vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~-------g~KmlfLv 268 (830)
T COG1202 196 VDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSG-------GKKMLFLV 268 (830)
T ss_pred ccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhC-------CCeEEEEe
Confidence 45677999999999999999999999999977 77999999999999999999988888887654 77899999
Q ss_pred ccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHH----HHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecch
Q 006824 306 PTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQF----KELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEA 381 (630)
Q Consensus 306 Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~----~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEa 381 (630)
|..+||+|-++.++.-+..+|+.+..-.|-.-....- -.....+||||+||+++-.+++.+ ..+.++..|||||+
T Consensus 269 PLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVVIDEi 347 (830)
T COG1202 269 PLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVVIDEI 347 (830)
T ss_pred hhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEEeeee
Confidence 9999999999999998888999987777653322111 011124899999999998888877 56899999999999
Q ss_pred hhhhcCCcHHHHHHHHhh---cCCCCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCccccHH
Q 006824 382 DRMFDLGFEPQIRSIVGQ---IRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLP 458 (630)
Q Consensus 382 h~~~~~~~~~~v~~i~~~---l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~ 458 (630)
|.+-+...++.+.-++.. +-+..|+|.+|||..++ ..+++.+.-+++.+.- .+.++..+..+......|+.
T Consensus 348 HtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp-~elA~~l~a~lV~y~~-----RPVplErHlvf~~~e~eK~~ 421 (830)
T COG1202 348 HTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNP-EELAKKLGAKLVLYDE-----RPVPLERHLVFARNESEKWD 421 (830)
T ss_pred eeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCCh-HHHHHHhCCeeEeecC-----CCCChhHeeeeecCchHHHH
Confidence 998876666666655544 44789999999999766 6688887766655432 23344555556666677777
Q ss_pred HHHHhccC-------CCCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcc
Q 006824 459 WLLEKLPG-------MIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAA 531 (630)
Q Consensus 459 ~l~~~l~~-------~~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~ 531 (630)
.+..+.+. ....|++|||++|+..|..++.+|...|+++..+|++++..+|..+...|.++++.++|+|-+++
T Consensus 422 ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~ 501 (830)
T COG1202 422 IIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALA 501 (830)
T ss_pred HHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhh
Confidence 66555432 12357999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCccEEEE----eC-CCCCHHHHHHHhhhcccCC-CCCeEEEEEeccc
Q 006824 532 RGLDIKSIKSVVN----FD-IARDMDMHVHRIGRTGRAG-DKDGTAYTLVTQK 578 (630)
Q Consensus 532 ~Gldi~~v~~VI~----~~-~p~~~~~y~QriGR~gR~g-~~~g~~~~l~~~~ 578 (630)
.|+|+|. +.||+ ++ -+-++..|.||+||+||.+ +..|++|.++.+.
T Consensus 502 AGVDFPA-SQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 502 AGVDFPA-SQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred cCCCCch-HHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 9999996 45553 33 3558999999999999999 6679999998763
No 63
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.7e-36 Score=305.38 Aligned_cols=324 Identities=25% Similarity=0.283 Sum_probs=238.8
Q ss_pred CCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhh
Q 006824 244 GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (630)
Q Consensus 244 ~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~ 323 (630)
+..+++.+|.......+.+ ++|++.|||.|||.++++-+.+.+.+.+ + ++|+++||+-|+.|.+..|.+++.
T Consensus 12 ~~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~------~-kvlfLAPTKPLV~Qh~~~~~~v~~ 83 (542)
T COG1111 12 NTIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFG------G-KVLFLAPTKPLVLQHAEFCRKVTG 83 (542)
T ss_pred ccccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcC------C-eEEEecCCchHHHHHHHHHHHHhC
Confidence 3357888999988777766 9999999999999998888888875542 4 899999999999999999999986
Q ss_pred hcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCcHHHHHHHHhhcCCC
Q 006824 324 SHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPD 403 (630)
Q Consensus 324 ~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~ 403 (630)
...-.++.++|.....+. ..+.....|+|+||+.+.+-+..+.+.+.++.++|+|||||-....-.-.+....-....+
T Consensus 84 ip~~~i~~ltGev~p~~R-~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~ 162 (542)
T COG1111 84 IPEDEIAALTGEVRPEER-EELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKN 162 (542)
T ss_pred CChhheeeecCCCChHHH-HHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhccC
Confidence 555567777777665544 4555668999999999999999999999999999999999965432222333333334567
Q ss_pred CcEEEEeecccHHHHH---HHHHHcCCCeEEE------------------------------------------------
Q 006824 404 RQTLLFSATMPRKVEK---LAREILSDPVRVT------------------------------------------------ 432 (630)
Q Consensus 404 ~q~l~~SAT~~~~~~~---l~~~~~~~~~~i~------------------------------------------------ 432 (630)
+.++++||||....+. .+..+.-..+.+.
T Consensus 163 ~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~ 242 (542)
T COG1111 163 PLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKEL 242 (542)
T ss_pred ceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 7899999999543222 1111110000000
Q ss_pred ---Ecccc--------cc----------c-------------------------ccceE---------------------
Q 006824 433 ---VGEVG--------MA----------N-------------------------EDITQ--------------------- 445 (630)
Q Consensus 433 ---~~~~~--------~~----------~-------------------------~~i~q--------------------- 445 (630)
..... .. . .++..
T Consensus 243 g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~ 322 (542)
T COG1111 243 GVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAK 322 (542)
T ss_pred CceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHH
Confidence 00000 00 0 00000
Q ss_pred ----------------EEEEcCCccccHHHHHHhccCCC---CCCCEEEEccchhhHHHHHHHHHhCCCcEE--EEe---
Q 006824 446 ----------------VVHVIPSDAEKLPWLLEKLPGMI---DDGDVLVFASKKTTVDEIESQLAQKGFKAA--ALH--- 501 (630)
Q Consensus 446 ----------------~~~~~~~~~~k~~~l~~~l~~~~---~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~--~ih--- 501 (630)
......-...|+..+.+++.... .+.++|||++.+..++.+.++|.+.+..+. ++-
T Consensus 323 ~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~ 402 (542)
T COG1111 323 SLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQAS 402 (542)
T ss_pred HHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccc
Confidence 00000012335555555554332 245899999999999999999999887763 222
Q ss_pred ----CCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEEEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEecc
Q 006824 502 ----GDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ 577 (630)
Q Consensus 502 ----g~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~ 577 (630)
.||+|.+..++++.|++|.++|||||+++++|||||.++.||+|++..|+..++||.||+||. +.|.+++|++.
T Consensus 403 r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~--r~Grv~vLvt~ 480 (542)
T COG1111 403 REGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK--RKGRVVVLVTE 480 (542)
T ss_pred cccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC--CCCeEEEEEec
Confidence 479999999999999999999999999999999999999999999999999999999999997 47999999998
Q ss_pred c
Q 006824 578 K 578 (630)
Q Consensus 578 ~ 578 (630)
.
T Consensus 481 g 481 (542)
T COG1111 481 G 481 (542)
T ss_pred C
Confidence 7
No 64
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=9.7e-37 Score=345.20 Aligned_cols=303 Identities=21% Similarity=0.282 Sum_probs=233.7
Q ss_pred HHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHH-hhhcCceEE
Q 006824 252 QCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF-AKSHGIRVS 330 (630)
Q Consensus 252 Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~-~~~~~~~~~ 330 (630)
-.+.+..+.++++++++|+||||||++|.++++.... .++++||++|||++|.|++..+... ....|..+.
T Consensus 10 ~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~--------~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VG 81 (812)
T PRK11664 10 LPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG--------INGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVG 81 (812)
T ss_pred HHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC--------cCCeEEEECChHHHHHHHHHHHHHHhCcccCceEE
Confidence 3456677788999999999999999999988886531 1347999999999999999888543 344567777
Q ss_pred EEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhh-hhcCCc-HHHHHHHHhhcCCCCcEEE
Q 006824 331 AVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR-MFDLGF-EPQIRSIVGQIRPDRQTLL 408 (630)
Q Consensus 331 ~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~-~~~~~~-~~~v~~i~~~l~~~~q~l~ 408 (630)
..+++.+.. .....|+|+||++|.+++... ..++++++|||||+|. .++.++ ...+..++..++++.|+|+
T Consensus 82 y~vr~~~~~------~~~t~I~v~T~G~Llr~l~~d-~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlil 154 (812)
T PRK11664 82 YRMRAESKV------GPNTRLEVVTEGILTRMIQRD-PELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLI 154 (812)
T ss_pred EEecCcccc------CCCCcEEEEChhHHHHHHhhC-CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEE
Confidence 777765432 124689999999999988764 4689999999999996 444432 2234556677888999999
Q ss_pred EeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCccccHH-----HHHHhccCCCCCCCEEEEccchhhH
Q 006824 409 FSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLP-----WLLEKLPGMIDDGDVLVFASKKTTV 483 (630)
Q Consensus 409 ~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~-----~l~~~l~~~~~~~~iLIF~~s~~~~ 483 (630)
||||++.. .+..++.++..+.+... ...+.+.+..... ..++. .+...+.. ..+.+|||+++..++
T Consensus 155 mSATl~~~---~l~~~~~~~~~I~~~gr---~~pV~~~y~~~~~-~~~~~~~v~~~l~~~l~~--~~g~iLVFlpg~~ei 225 (812)
T PRK11664 155 MSATLDND---RLQQLLPDAPVIVSEGR---SFPVERRYQPLPA-HQRFDEAVARATAELLRQ--ESGSLLLFLPGVGEI 225 (812)
T ss_pred EecCCCHH---HHHHhcCCCCEEEecCc---cccceEEeccCch-hhhHHHHHHHHHHHHHHh--CCCCEEEEcCCHHHH
Confidence 99999865 23566665544443322 2235555443332 22332 22333322 358999999999999
Q ss_pred HHHHHHHHh---CCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEEEEeCCCCC----------
Q 006824 484 DEIESQLAQ---KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARD---------- 550 (630)
Q Consensus 484 ~~l~~~L~~---~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~~---------- 550 (630)
+.+++.|.. .++.+..+||++++.+|..++..|.+|+.+|||||+++++||||++|++||+++.+..
T Consensus 226 ~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~ 305 (812)
T PRK11664 226 QRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLT 305 (812)
T ss_pred HHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcc
Confidence 999999987 5788999999999999999999999999999999999999999999999999887653
Q ss_pred --------HHHHHHHhhhcccCCCCCeEEEEEeccccH
Q 006824 551 --------MDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (630)
Q Consensus 551 --------~~~y~QriGR~gR~g~~~g~~~~l~~~~d~ 580 (630)
...|.||.||+||.+ +|.||.|+++.+.
T Consensus 306 ~L~~~~iSkasa~QR~GRaGR~~--~G~cyrL~t~~~~ 341 (812)
T PRK11664 306 RLVTQRISQASMTQRAGRAGRLE--PGICLHLYSKEQA 341 (812)
T ss_pred eeEEEeechhhhhhhccccCCCC--CcEEEEecCHHHH
Confidence 357999999999985 7999999997654
No 65
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=6.4e-36 Score=331.47 Aligned_cols=320 Identities=18% Similarity=0.232 Sum_probs=238.3
Q ss_pred CCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhh
Q 006824 244 GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (630)
Q Consensus 244 ~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~ 323 (630)
|. .|+++|..+++.+.+|+ |+.+.||+|||+++++|++...+. |+.++|++||++||.|.++.+..++.
T Consensus 76 g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~--------G~~v~VvTpt~~LA~qd~e~~~~l~~ 144 (790)
T PRK09200 76 GM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE--------GKGVHLITVNDYLAKRDAEEMGQVYE 144 (790)
T ss_pred CC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc--------CCCeEEEeCCHHHHHHHHHHHHHHHh
Confidence 54 79999999999988887 999999999999999999866543 77899999999999999999999999
Q ss_pred hcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHH-HHHHHcc------ccccCceeEEEecchhhhhc-C--------
Q 006824 324 SHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRL-IDMLKMK------ALTMSRVTYLVLDEADRMFD-L-------- 387 (630)
Q Consensus 324 ~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L-~~~l~~~------~~~l~~i~~lVvDEah~~~~-~-------- 387 (630)
.+|+++.++.|+.+...+.+. ..+++|+++||++| .+++..+ ...++.+.++||||||+|+- .
T Consensus 145 ~lGl~v~~i~g~~~~~~~r~~-~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliis 223 (790)
T PRK09200 145 FLGLTVGLNFSDIDDASEKKA-IYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIIS 223 (790)
T ss_pred hcCCeEEEEeCCCCcHHHHHH-hcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeee
Confidence 999999999999884444343 34699999999999 5555432 23568899999999998731 0
Q ss_pred -------CcHHHHHHHHhhcCC--------C-------------------------------------------------
Q 006824 388 -------GFEPQIRSIVGQIRP--------D------------------------------------------------- 403 (630)
Q Consensus 388 -------~~~~~v~~i~~~l~~--------~------------------------------------------------- 403 (630)
.+...+..+...+.. .
T Consensus 224 g~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~ 303 (790)
T PRK09200 224 GKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDV 303 (790)
T ss_pred CCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCC
Confidence 011111122221110 0
Q ss_pred ------------------------------------------------------------CcEEEEeecccHHHHHHHHH
Q 006824 404 ------------------------------------------------------------RQTLLFSATMPRKVEKLARE 423 (630)
Q Consensus 404 ------------------------------------------------------------~q~l~~SAT~~~~~~~l~~~ 423 (630)
..+.+||+|....-.++...
T Consensus 304 dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~ 383 (790)
T PRK09200 304 DYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEV 383 (790)
T ss_pred cEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHH
Confidence 24455555554333333333
Q ss_pred HcCCCeEEEEcccccccccceEEEEEcCCccccHHHHHHhccCC-CCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeC
Q 006824 424 ILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGM-IDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHG 502 (630)
Q Consensus 424 ~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~-~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg 502 (630)
|.- .+....... ..........++.....|...++..+... ....++||||+|...++.++..|.+.|+++..+||
T Consensus 384 Y~l-~v~~IPt~k--p~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~ 460 (790)
T PRK09200 384 YNM-EVVQIPTNR--PIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNA 460 (790)
T ss_pred hCC-cEEECCCCC--CcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecC
Confidence 322 221111111 11111111122234457888888887653 34568999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCC---CCcc-----EEEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEE
Q 006824 503 DKDQASRMEILQKFKSGVYHVLIATDVAARGLDI---KSIK-----SVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTL 574 (630)
Q Consensus 503 ~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi---~~v~-----~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l 574 (630)
.+.+.++..+...+..| .|+|||++++||+|| ++|. +||+|++|.+...|.||+||+||.| .+|.+++|
T Consensus 461 ~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G-~~G~s~~~ 537 (790)
T PRK09200 461 KNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQG-DPGSSQFF 537 (790)
T ss_pred CccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCC-CCeeEEEE
Confidence 99988887777776665 799999999999999 6898 9999999999999999999999999 68999999
Q ss_pred eccccHH
Q 006824 575 VTQKEAR 581 (630)
Q Consensus 575 ~~~~d~~ 581 (630)
++..|.-
T Consensus 538 is~eD~l 544 (790)
T PRK09200 538 ISLEDDL 544 (790)
T ss_pred EcchHHH
Confidence 9987743
No 66
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=1e-35 Score=347.47 Aligned_cols=291 Identities=24% Similarity=0.319 Sum_probs=226.2
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHH
Q 006824 236 LMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIY 315 (630)
Q Consensus 236 l~~~l~~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~ 315 (630)
+.+.+.+.....|+|+|..++|.++.|+|++++||||+|||+ |.+|++..+.. .++++|||+|||+||.|++
T Consensus 67 f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~-------~g~~vLIL~PTreLa~Qi~ 138 (1171)
T TIGR01054 67 FEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK-------KGKRCYIILPTTLLVIQVA 138 (1171)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh-------cCCeEEEEeCHHHHHHHHH
Confidence 444555545558999999999999999999999999999997 66777665532 2788999999999999999
Q ss_pred HHHHHHhhhcCceEE---EEECCCChHHH---HHHHHc-CCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhc--
Q 006824 316 LETKKFAKSHGIRVS---AVYGGMSKLDQ---FKELKA-GCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFD-- 386 (630)
Q Consensus 316 ~~~~~~~~~~~~~~~---~~~gg~~~~~~---~~~l~~-~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~-- 386 (630)
+.+.+++...++.+. +++||.+..++ +..+.. +++|+|+||++|.+.+..- .. .++++||||||+|++
T Consensus 139 ~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l--~~-~~~~iVvDEaD~~L~~~ 215 (1171)
T TIGR01054 139 EKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDEL--GP-KFDFIFVDDVDALLKAS 215 (1171)
T ss_pred HHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHh--cC-CCCEEEEeChHhhhhcc
Confidence 999999987776654 45687776554 334444 4999999999999877641 12 899999999999997
Q ss_pred ---------CCcHHH-HHHHH----------------------hhcCCCCc--EEEEeec-ccHHHHHHHHHHcCCCeEE
Q 006824 387 ---------LGFEPQ-IRSIV----------------------GQIRPDRQ--TLLFSAT-MPRKVEKLAREILSDPVRV 431 (630)
Q Consensus 387 ---------~~~~~~-v~~i~----------------------~~l~~~~q--~l~~SAT-~~~~~~~l~~~~~~~~~~i 431 (630)
+||... +..++ +.++..+| +++|||| +|..+. ..++.++..+
T Consensus 216 k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~---~~l~r~ll~~ 292 (1171)
T TIGR01054 216 KNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKR---AKLFRELLGF 292 (1171)
T ss_pred ccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccH---HHHcccccce
Confidence 678764 45443 23444555 5678999 555433 2345566667
Q ss_pred EEcccccccccceEEEEEcCCccccHHHHHHhccCCCCCCCEEEEccch---hhHHHHHHHHHhCCCcEEEEeCCCCHHH
Q 006824 432 TVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKK---TTVDEIESQLAQKGFKAAALHGDKDQAS 508 (630)
Q Consensus 432 ~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~~~~~iLIF~~s~---~~~~~l~~~L~~~~~~~~~ihg~~~~~~ 508 (630)
.++.......++.+.+..... +...|..++... ..++||||+++ ..|+.++..|...|+++..+||++++
T Consensus 293 ~v~~~~~~~r~I~~~~~~~~~---~~~~L~~ll~~l--~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~-- 365 (1171)
T TIGR01054 293 EVGGGSDTLRNVVDVYVEDED---LKETLLEIVKKL--GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK-- 365 (1171)
T ss_pred EecCccccccceEEEEEeccc---HHHHHHHHHHHc--CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH--
Confidence 776666666677777654432 244566666543 35899999999 99999999999999999999999973
Q ss_pred HHHHHHHhhcCCceEEEE----cCCcccCCCCCC-ccEEEEeCCCC
Q 006824 509 RMEILQKFKSGVYHVLIA----TDVAARGLDIKS-IKSVVNFDIAR 549 (630)
Q Consensus 509 r~~~~~~F~~g~~~VLva----T~~~~~Gldi~~-v~~VI~~~~p~ 549 (630)
.+++.|++|+++|||| |++++||||||+ |++|||||+|.
T Consensus 366 --~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 366 --EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred --HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 6899999999999999 489999999999 89999999996
No 67
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=2.6e-35 Score=323.52 Aligned_cols=320 Identities=20% Similarity=0.177 Sum_probs=230.8
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcC
Q 006824 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (630)
Q Consensus 247 ~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~ 326 (630)
.++|+|.|++..+..+++.|+.++||+|||++|++|++.+.+. ++.++||+|+++||.|+++++..++..+|
T Consensus 68 glrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~--------g~~V~VVTpn~yLA~Rdae~m~~l~~~LG 139 (762)
T TIGR03714 68 GMFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALT--------GKGAMLVTTNDYLAKRDAEEMGPVYEWLG 139 (762)
T ss_pred CCCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhc--------CCceEEeCCCHHHHHHHHHHHHHHHhhcC
Confidence 3566666666666656668999999999999999998777653 45699999999999999999999999999
Q ss_pred ceEEEEECCCC---hHHHHHHHHcCCcEEEeChHHH-HHHHHc------cccccCceeEEEecchhhhhcCC--------
Q 006824 327 IRVSAVYGGMS---KLDQFKELKAGCEIVIATPGRL-IDMLKM------KALTMSRVTYLVLDEADRMFDLG-------- 388 (630)
Q Consensus 327 ~~~~~~~gg~~---~~~~~~~l~~~~dIiv~Tp~~L-~~~l~~------~~~~l~~i~~lVvDEah~~~~~~-------- 388 (630)
+++.+++++.. .....+....+++|+++||++| .+++.. ....++.+.++||||||.|+-..
T Consensus 140 Lsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliis 219 (762)
T TIGR03714 140 LTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVIS 219 (762)
T ss_pred CcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeee
Confidence 99998887632 2222334445799999999999 565532 23457789999999999983210
Q ss_pred --------cHHHHHHHHhhcCCC---------------------------------------------------------
Q 006824 389 --------FEPQIRSIVGQIRPD--------------------------------------------------------- 403 (630)
Q Consensus 389 --------~~~~v~~i~~~l~~~--------------------------------------------------------- 403 (630)
....+..+...+.+.
T Consensus 220 g~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~ 299 (762)
T TIGR03714 220 GAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNK 299 (762)
T ss_pred CCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCC
Confidence 111111222222110
Q ss_pred ------------------------------------------------------------CcEEEEeecccHHHHHHHHH
Q 006824 404 ------------------------------------------------------------RQTLLFSATMPRKVEKLARE 423 (630)
Q Consensus 404 ------------------------------------------------------------~q~l~~SAT~~~~~~~l~~~ 423 (630)
.++.+||+|...+..++...
T Consensus 300 dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~i 379 (762)
T TIGR03714 300 DYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIET 379 (762)
T ss_pred ceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHHH
Confidence 24555566654444444433
Q ss_pred HcCCCeEEEEcccccccccceEEEEEcCCccccHHHHHHhccCC-CCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeC
Q 006824 424 ILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGM-IDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHG 502 (630)
Q Consensus 424 ~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~-~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg 502 (630)
| +-.+.......+ .......-.++.....|+..++..+... ....++||||+++..++.++..|.+.|+++..+||
T Consensus 380 Y-~l~v~~IPt~kp--~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a 456 (762)
T TIGR03714 380 Y-SLSVVKIPTNKP--IIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNA 456 (762)
T ss_pred h-CCCEEEcCCCCC--eeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecC
Confidence 2 212211111111 1111111122334557888888877654 34568999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCC---------CccEEEEeCCCCCHHHHHHHhhhcccCCCCCeEEEE
Q 006824 503 DKDQASRMEILQKFKSGVYHVLIATDVAARGLDIK---------SIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYT 573 (630)
Q Consensus 503 ~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~---------~v~~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~ 573 (630)
.+.+.++..+...++.| .|+|||++++||+||+ ++.+|++|++|..... .||+||+||.| ++|.+++
T Consensus 457 ~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG-~~G~s~~ 532 (762)
T TIGR03714 457 QNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQG-DPGSSQF 532 (762)
T ss_pred CChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCC-CceeEEE
Confidence 99998887776666665 7999999999999999 9999999999998777 99999999999 6899999
Q ss_pred EeccccHH
Q 006824 574 LVTQKEAR 581 (630)
Q Consensus 574 l~~~~d~~ 581 (630)
|++..|.-
T Consensus 533 ~is~eD~l 540 (762)
T TIGR03714 533 FVSLEDDL 540 (762)
T ss_pred EEccchhh
Confidence 99987743
No 68
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=3.8e-36 Score=336.15 Aligned_cols=336 Identities=23% Similarity=0.310 Sum_probs=258.4
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHH-HHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHH
Q 006824 231 GFSTQLMHAISKQGYEKPTSIQCQALPI-ILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRE 309 (630)
Q Consensus 231 ~l~~~l~~~l~~~~~~~~~~~Q~~~i~~-il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~ 309 (630)
.++..+.+.+...++..+.|.|+.++.. ++.++|+|+++|||||||+++++.+++.+.+. +.++++|||+++
T Consensus 15 ~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~-------~~k~vYivPlkA 87 (766)
T COG1204 15 KLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG-------GGKVVYIVPLKA 87 (766)
T ss_pred cccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc-------CCcEEEEeChHH
Confidence 3677788888888887888888877755 45669999999999999999999999998653 567999999999
Q ss_pred HHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCc
Q 006824 310 LAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGF 389 (630)
Q Consensus 310 La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~ 389 (630)
||.+.++++. .+..+|+++...+|+...... ...+++|||+||+++..++++....+..+++|||||+|.+.+...
T Consensus 88 La~Ek~~~~~-~~~~~GirV~~~TgD~~~~~~---~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~R 163 (766)
T COG1204 88 LAEEKYEEFS-RLEELGIRVGISTGDYDLDDE---RLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTR 163 (766)
T ss_pred HHHHHHHHhh-hHHhcCCEEEEecCCcccchh---hhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCccc
Confidence 9999999999 445679999999998775442 234699999999999999988777888999999999999888766
Q ss_pred HHHHHHHHhhcC---CCCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccc-cccceEEEEEcCCcc-----ccHHHH
Q 006824 390 EPQIRSIVGQIR---PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMA-NEDITQVVHVIPSDA-----EKLPWL 460 (630)
Q Consensus 390 ~~~v~~i~~~l~---~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~-~~~i~q~~~~~~~~~-----~k~~~l 460 (630)
++.+..|+..++ ...|++++|||+|+. ..++.++-.++........... .....+.+....... .+....
T Consensus 164 G~~lE~iv~r~~~~~~~~rivgLSATlpN~-~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~ 242 (766)
T COG1204 164 GPVLESIVARMRRLNELIRIVGLSATLPNA-EEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLA 242 (766)
T ss_pred CceehhHHHHHHhhCcceEEEEEeeecCCH-HHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHH
Confidence 777777766554 447999999999865 6788887776652222222111 112223333322111 112222
Q ss_pred HHhc-cCCCCCCCEEEEccchhhHHHHHHHHHhC-------------------------------------CCcEEEEeC
Q 006824 461 LEKL-PGMIDDGDVLVFASKKTTVDEIESQLAQK-------------------------------------GFKAAALHG 502 (630)
Q Consensus 461 ~~~l-~~~~~~~~iLIF~~s~~~~~~l~~~L~~~-------------------------------------~~~~~~ihg 502 (630)
...+ ......+++||||+++..+...++.|... -..++.+|.
T Consensus 243 ~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhA 322 (766)
T COG1204 243 LELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHA 322 (766)
T ss_pred HHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCcccccc
Confidence 2222 23335779999999999999999888730 124788999
Q ss_pred CCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEEE----EeC-----CCCCHHHHHHHhhhcccCC-CCCeEEE
Q 006824 503 DKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVV----NFD-----IARDMDMHVHRIGRTGRAG-DKDGTAY 572 (630)
Q Consensus 503 ~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI----~~~-----~p~~~~~y~QriGR~gR~g-~~~g~~~ 572 (630)
+++..+|..+...|+.|+++||+||..+++|+|+|.-..|| .|+ .+-++.+|.||+||+||.| +..|.++
T Consensus 323 GL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~ 402 (766)
T COG1204 323 GLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAI 402 (766)
T ss_pred CCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEE
Confidence 99999999999999999999999999999999999755555 466 4557889999999999999 5567888
Q ss_pred EEeccc
Q 006824 573 TLVTQK 578 (630)
Q Consensus 573 ~l~~~~ 578 (630)
++.+..
T Consensus 403 i~~~~~ 408 (766)
T COG1204 403 ILATSH 408 (766)
T ss_pred EEecCc
Confidence 887443
No 69
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=1.1e-35 Score=324.22 Aligned_cols=317 Identities=19% Similarity=0.212 Sum_probs=239.4
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcC
Q 006824 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (630)
Q Consensus 247 ~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~ 326 (630)
.|+++|..+.+.+..|+ |+.++||+|||++|++|++...+. |..++||+||+.||.|.++++.+++..+|
T Consensus 56 ~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~--------G~~V~VvTpt~~LA~qdae~~~~l~~~LG 125 (745)
T TIGR00963 56 RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT--------GKGVHVVTVNDYLAQRDAEWMGQVYRFLG 125 (745)
T ss_pred CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh--------CCCEEEEcCCHHHHHHHHHHHHHHhccCC
Confidence 68889998888888776 999999999999999999654432 44599999999999999999999999999
Q ss_pred ceEEEEECCCChHHHHHHHHcCCcEEEeChHHH-HHHHHcc------ccccCceeEEEecchhhhhc-CCc---------
Q 006824 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRL-IDMLKMK------ALTMSRVTYLVLDEADRMFD-LGF--------- 389 (630)
Q Consensus 327 ~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L-~~~l~~~------~~~l~~i~~lVvDEah~~~~-~~~--------- 389 (630)
+++.+++||.+.......+ .++|+++||++| .++++.+ ...++.+.++||||+|+|+- ...
T Consensus 126 Lsv~~i~g~~~~~~r~~~y--~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~~ 203 (745)
T TIGR00963 126 LSVGLILSGMSPEERREAY--ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPA 203 (745)
T ss_pred CeEEEEeCCCCHHHHHHhc--CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCCC
Confidence 9999999998865543333 489999999999 8888765 34678899999999999742 100
Q ss_pred ------HHHHHHHHhhcCC-------------------------------------------------------------
Q 006824 390 ------EPQIRSIVGQIRP------------------------------------------------------------- 402 (630)
Q Consensus 390 ------~~~v~~i~~~l~~------------------------------------------------------------- 402 (630)
......+...+..
T Consensus 204 ~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dYi 283 (745)
T TIGR00963 204 EKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDYI 283 (745)
T ss_pred CCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEE
Confidence 0000111111110
Q ss_pred --------------------------------------------------------CCcEEEEeecccHHHHHHHHHHcC
Q 006824 403 --------------------------------------------------------DRQTLLFSATMPRKVEKLAREILS 426 (630)
Q Consensus 403 --------------------------------------------------------~~q~l~~SAT~~~~~~~l~~~~~~ 426 (630)
...+.+||+|...+...+...|.-
T Consensus 284 V~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l 363 (745)
T TIGR00963 284 VRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIYNL 363 (745)
T ss_pred EECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHhCC
Confidence 024455666655444444333322
Q ss_pred CCeEEEEcccccccccceEEEEEcCCccccHHHHHHhccCC-CCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCC
Q 006824 427 DPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGM-IDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKD 505 (630)
Q Consensus 427 ~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~-~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~ 505 (630)
+ +.+.....+ .........++.....|+..++..+... ..+.++||||++...++.++..|.+.|+++..+|+.
T Consensus 364 ~-vv~IPtnkp--~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~-- 438 (745)
T TIGR00963 364 E-VVVVPTNRP--VIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK-- 438 (745)
T ss_pred C-EEEeCCCCC--eeeeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--
Confidence 2 222111111 1111111122334556888887776443 345689999999999999999999999999999998
Q ss_pred HHHHHHHHHHhhcCCceEEEEcCCcccCCCCCC-------ccEEEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEeccc
Q 006824 506 QASRMEILQKFKSGVYHVLIATDVAARGLDIKS-------IKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQK 578 (630)
Q Consensus 506 ~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~-------v~~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~ 578 (630)
+.+|+..+..|..+...|+|||++++||+||+. .-+||+++.|.|...|.|++||+||.| .+|.+.+|++..
T Consensus 439 q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG-~~G~s~~~ls~e 517 (745)
T TIGR00963 439 NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQG-DPGSSRFFLSLE 517 (745)
T ss_pred hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCC-CCcceEEEEecc
Confidence 889999999999999999999999999999998 559999999999999999999999999 689999999998
Q ss_pred cHH
Q 006824 579 EAR 581 (630)
Q Consensus 579 d~~ 581 (630)
|.-
T Consensus 518 D~l 520 (745)
T TIGR00963 518 DNL 520 (745)
T ss_pred HHH
Confidence 743
No 70
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=5.9e-35 Score=337.67 Aligned_cols=325 Identities=25% Similarity=0.318 Sum_probs=243.6
Q ss_pred CCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhh
Q 006824 244 GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (630)
Q Consensus 244 ~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~ 323 (630)
+..+|+++|.+++..++.+ ++|+++|||+|||+++++++..++. ..+.++|||+||++|+.||...+++++.
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~-------~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 83 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLH-------KKGGKVLILAPTKPLVEQHAEFFRKFLN 83 (773)
T ss_pred CcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHH-------hCCCeEEEEeCcHHHHHHHHHHHHHHhC
Confidence 3457899999999988887 9999999999999999988887763 1256899999999999999999999875
Q ss_pred hcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCcHHHHHHHHhhcCCC
Q 006824 324 SHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPD 403 (630)
Q Consensus 324 ~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~ 403 (630)
..+..+..++|+.+.. ....+..+++|+|+||+.+...+......+..+++|||||||++........+...+....+.
T Consensus 84 ~~~~~v~~~~g~~~~~-~r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~ 162 (773)
T PRK13766 84 IPEEKIVVFTGEVSPE-KRAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKN 162 (773)
T ss_pred CCCceEEEEeCCCCHH-HHHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCC
Confidence 4445777777776654 445566678999999999988877777778899999999999987554344444444444567
Q ss_pred CcEEEEeecccHH---HHHHHHHHcCCCeEEE--------------------Eccc------------------------
Q 006824 404 RQTLLFSATMPRK---VEKLAREILSDPVRVT--------------------VGEV------------------------ 436 (630)
Q Consensus 404 ~q~l~~SAT~~~~---~~~l~~~~~~~~~~i~--------------------~~~~------------------------ 436 (630)
+++++||||+... +..++..+....+.+. +.-.
T Consensus 163 ~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~ 242 (773)
T PRK13766 163 PLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKEL 242 (773)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 7899999998422 2222222111100000 0000
Q ss_pred ccc---c------------ccceEE-------------------------------------------------------
Q 006824 437 GMA---N------------EDITQV------------------------------------------------------- 446 (630)
Q Consensus 437 ~~~---~------------~~i~q~------------------------------------------------------- 446 (630)
+.. . ..+.+.
T Consensus 243 ~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~ 322 (773)
T PRK13766 243 GVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKA 322 (773)
T ss_pred CCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHH
Confidence 000 0 000000
Q ss_pred ----------------EEEcCCccccHHHHHHhccCC---CCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCC----
Q 006824 447 ----------------VHVIPSDAEKLPWLLEKLPGM---IDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGD---- 503 (630)
Q Consensus 447 ----------------~~~~~~~~~k~~~l~~~l~~~---~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~---- 503 (630)
...+.....|+..|.+.|... ...+++||||++...|..|+++|...++.+..+||.
T Consensus 323 ~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~ 402 (773)
T PRK13766 323 SKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKD 402 (773)
T ss_pred HHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEcccccc
Confidence 000011234555555555433 245789999999999999999999999999999986
Q ss_pred ----CCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEEEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEecccc
Q 006824 504 ----KDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKE 579 (630)
Q Consensus 504 ----~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d 579 (630)
+++.+|.+++..|++|+.+|||||+++++|+|+|.+++||+||+|+++..|+||+||+||.| .|.+++|++...
T Consensus 403 ~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~--~~~v~~l~~~~t 480 (773)
T PRK13766 403 GDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQE--EGRVVVLIAKGT 480 (773)
T ss_pred ccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCC--CCEEEEEEeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999987 589999988643
No 71
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.4e-34 Score=293.23 Aligned_cols=346 Identities=21% Similarity=0.271 Sum_probs=265.1
Q ss_pred CCCCCcHHHHHHHHHHHcCCCEEEEeCCC-ChH--HHHHHHHHHHHHhcCCcccccC-----------------------
Q 006824 244 GYEKPTSIQCQALPIILSGRDIIGIAKTG-SGK--TAAFVLPMIVHIMDQPELQKEE----------------------- 297 (630)
Q Consensus 244 ~~~~~~~~Q~~~i~~il~g~d~l~~a~TG-sGK--T~~~~l~~l~~~~~~~~~~~~~----------------------- 297 (630)
.-..+|+.|.+.+..+.+++|+++...|- .|+ +-+|++++|+|+++.+++..+|
T Consensus 213 ~s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~t 292 (698)
T KOG2340|consen 213 KSEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFT 292 (698)
T ss_pred ccCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCC
Confidence 34579999999999999999998765443 233 4679999999999877544332
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHhhhcCc---------eEEEEECC--------CChHHHHHHHHcC------------
Q 006824 298 GPIGVICAPTRELAHQIYLETKKFAKSHGI---------RVSAVYGG--------MSKLDQFKELKAG------------ 348 (630)
Q Consensus 298 ~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~---------~~~~~~gg--------~~~~~~~~~l~~~------------ 348 (630)
+|+||||||+|+.|..+++.+..++....- +...-|+| .++++.+..++.|
T Consensus 293 RpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~f 372 (698)
T KOG2340|consen 293 RPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAF 372 (698)
T ss_pred CceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHH
Confidence 699999999999999999999888442111 00111221 2334444444433
Q ss_pred -------------CcEEEeChHHHHHHHHc------cccccCceeEEEecchhhhhcCCcHHHHHHHHhhcCC-------
Q 006824 349 -------------CEIVIATPGRLIDMLKM------KALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRP------- 402 (630)
Q Consensus 349 -------------~dIiv~Tp~~L~~~l~~------~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~------- 402 (630)
+||+||+|.+|.+++.. ...+|++|.++|||.||.|+ +++|.++..|+.+++.
T Consensus 373 tkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l-~QNwEhl~~ifdHLn~~P~k~h~ 451 (698)
T KOG2340|consen 373 TKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIML-MQNWEHLLHIFDHLNLQPSKQHD 451 (698)
T ss_pred HHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHH-HhhHHHHHHHHHHhhcCcccccC
Confidence 89999999999999973 34568999999999999988 5678899999999863
Q ss_pred -----------------CCcEEEEeecccHHHHHHHHHHcCCCeE-EEE------cccccccccceEEEEEc------CC
Q 006824 403 -----------------DRQTLLFSATMPRKVEKLAREILSDPVR-VTV------GEVGMANEDITQVVHVI------PS 452 (630)
Q Consensus 403 -----------------~~q~l~~SAT~~~~~~~l~~~~~~~~~~-i~~------~~~~~~~~~i~q~~~~~------~~ 452 (630)
.+|+++||+...+.+..++..+|.|..- +.. +........+.|.+..+ ..
T Consensus 452 ~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~ 531 (698)
T KOG2340|consen 452 VDFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIET 531 (698)
T ss_pred CChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccC
Confidence 2699999999999999999999987421 111 11222223334444332 23
Q ss_pred ccccHHHHHHhccCCC-C--CCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCC
Q 006824 453 DAEKLPWLLEKLPGMI-D--DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDV 529 (630)
Q Consensus 453 ~~~k~~~l~~~l~~~~-~--~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~ 529 (630)
.+.++.+++..+...+ . ...+|||+|++-+..+++++|++..+.++.||.+.++..-.++++.|..|+..||++|.+
T Consensus 532 ~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER 611 (698)
T KOG2340|consen 532 PDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTER 611 (698)
T ss_pred chHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehh
Confidence 5678888877664332 2 347999999999999999999999999999999999999999999999999999999999
Q ss_pred cc--cCCCCCCccEEEEeCCCCCHHHHHHHh---hhcccCC---CCCeEEEEEeccccHHHHHHHHHHH
Q 006824 530 AA--RGLDIKSIKSVVNFDIARDMDMHVHRI---GRTGRAG---DKDGTAYTLVTQKEARFAGELVNSL 590 (630)
Q Consensus 530 ~~--~Gldi~~v~~VI~~~~p~~~~~y~Qri---GR~gR~g---~~~g~~~~l~~~~d~~~~~~l~~~l 590 (630)
++ |+.+|++|+.||+|.+|.+|.+|...+ +|+.-.| ...-+|.+++++.|.--+..+|..-
T Consensus 612 ~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~ivGte 680 (698)
T KOG2340|consen 612 AHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENIVGTE 680 (698)
T ss_pred hhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHhhhHH
Confidence 98 999999999999999999999997655 4443322 1235899999999998888887643
No 72
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=2.6e-33 Score=293.19 Aligned_cols=290 Identities=17% Similarity=0.181 Sum_probs=204.5
Q ss_pred HHHHHHHHHHcCCC--EEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhc---
Q 006824 251 IQCQALPIILSGRD--IIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH--- 325 (630)
Q Consensus 251 ~Q~~~i~~il~g~d--~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~--- 325 (630)
+|.++++.+.++.+ +++++|||||||.+|++|++.. +.++++++|+++|+.|+++.+..++..+
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~-----------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~ 69 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG-----------ENDTIALYPTNALIEDQTEAIKEFVDVFKPE 69 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc-----------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCC
Confidence 59999999999975 7889999999999999998842 3358999999999999999999987543
Q ss_pred -CceEEEEECCCChHH-HH-----------------HH--HHcCCcEEEeChHHHHHHHHccc--------cccCceeEE
Q 006824 326 -GIRVSAVYGGMSKLD-QF-----------------KE--LKAGCEIVIATPGRLIDMLKMKA--------LTMSRVTYL 376 (630)
Q Consensus 326 -~~~~~~~~gg~~~~~-~~-----------------~~--l~~~~dIiv~Tp~~L~~~l~~~~--------~~l~~i~~l 376 (630)
+..+..+.|...... .. +. ..+.++|+++||+.|..++.... ..+.++++|
T Consensus 70 ~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~i 149 (357)
T TIGR03158 70 RDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTV 149 (357)
T ss_pred CCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEE
Confidence 455555555321110 00 00 12358899999999987664311 125789999
Q ss_pred EecchhhhhcCCc-----HHHHHHHHhhcCCCCcEEEEeecccHHHHHHHHHH--cCCCeEEEEccc-----------cc
Q 006824 377 VLDEADRMFDLGF-----EPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREI--LSDPVRVTVGEV-----------GM 438 (630)
Q Consensus 377 VvDEah~~~~~~~-----~~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~~~--~~~~~~i~~~~~-----------~~ 438 (630)
||||+|.+..++. ......++.......+++++|||+++.+...+... ++.|..+..+.. ..
T Consensus 150 V~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~ 229 (357)
T TIGR03158 150 IFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADN 229 (357)
T ss_pred EEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccc
Confidence 9999999764331 12233344433445799999999999877777665 455544433320 00
Q ss_pred -------ccccceEEEEEcCCccccHHHH---HHhccCC---CCCCCEEEEccchhhHHHHHHHHHhCC--CcEEEEeCC
Q 006824 439 -------ANEDITQVVHVIPSDAEKLPWL---LEKLPGM---IDDGDVLVFASKKTTVDEIESQLAQKG--FKAAALHGD 503 (630)
Q Consensus 439 -------~~~~i~q~~~~~~~~~~k~~~l---~~~l~~~---~~~~~iLIF~~s~~~~~~l~~~L~~~~--~~~~~ihg~ 503 (630)
....+.+.+.. ....+...+ ...+.+. ...+++||||+++..++.++..|+..+ +.+..+||.
T Consensus 230 ~~~~~~~~~~~i~~~~~~--~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~ 307 (357)
T TIGR03158 230 KTQSFRPVLPPVELELIP--APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGF 307 (357)
T ss_pred cccccceeccceEEEEEe--CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecC
Confidence 00134443333 222333333 2333221 245689999999999999999999864 578899999
Q ss_pred CCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEEEEeCCCCCHHHHHHHhhhcc
Q 006824 504 KDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTG 562 (630)
Q Consensus 504 ~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~QriGR~g 562 (630)
+++.+|.++ ++..|||||++++||+||+.+ +|| ++ |.++..|+||+||+|
T Consensus 308 ~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 308 APKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred CCHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 999988755 478999999999999999987 666 55 889999999999997
No 73
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=4.2e-33 Score=300.00 Aligned_cols=321 Identities=26% Similarity=0.306 Sum_probs=231.9
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhc
Q 006824 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (630)
Q Consensus 246 ~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~ 325 (630)
-.++++|.+.+...+ |+++|+++|||+|||.+++..|++|+-+.+ ..++++++||+-|+.|....+..++..
T Consensus 61 ~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p------~~KiVF~aP~~pLv~QQ~a~~~~~~~~- 132 (746)
T KOG0354|consen 61 LELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRP------KGKVVFLAPTRPLVNQQIACFSIYLIP- 132 (746)
T ss_pred ccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCC------cceEEEeeCCchHHHHHHHHHhhccCc-
Confidence 468999999998888 999999999999999999999999987665 477999999999999999777777653
Q ss_pred CceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccc-cCceeEEEecchhhhhcCC-cHHHHHHHHhhcCCC
Q 006824 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALT-MSRVTYLVLDEADRMFDLG-FEPQIRSIVGQIRPD 403 (630)
Q Consensus 326 ~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~-l~~i~~lVvDEah~~~~~~-~~~~v~~i~~~l~~~ 403 (630)
..+....||.........+....+|+|+||+.|.+.|...... |+.+.++||||||+-.... +...++.++..-...
T Consensus 133 -~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~~ 211 (746)
T KOG0354|consen 133 -YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQG 211 (746)
T ss_pred -ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhhcc
Confidence 5666667775555455567777999999999999988765333 6899999999999966443 444444555554455
Q ss_pred CcEEEEeecccHHHHHHHH---HHcCC----------------------CeEE---------------------------
Q 006824 404 RQTLLFSATMPRKVEKLAR---EILSD----------------------PVRV--------------------------- 431 (630)
Q Consensus 404 ~q~l~~SAT~~~~~~~l~~---~~~~~----------------------~~~i--------------------------- 431 (630)
.|+|++|||+....+.... .++-+ |+.+
T Consensus 212 ~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l 291 (746)
T KOG0354|consen 212 NQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGL 291 (746)
T ss_pred ccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCc
Confidence 5999999999754332211 11110 0000
Q ss_pred ---EEcc----------cccccccc--eEE--------------------EEEc--------------------------
Q 006824 432 ---TVGE----------VGMANEDI--TQV--------------------VHVI-------------------------- 450 (630)
Q Consensus 432 ---~~~~----------~~~~~~~i--~q~--------------------~~~~-------------------------- 450 (630)
.-.. ......+. .+. ...+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~ 371 (746)
T KOG0354|consen 292 IEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEAR 371 (746)
T ss_pred cccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcch
Confidence 0000 00000000 000 0000
Q ss_pred -------------------CCccccHHHHHHhccCC---CCCCCEEEEccchhhHHHHHHHHHhC---CCcEEEEe----
Q 006824 451 -------------------PSDAEKLPWLLEKLPGM---IDDGDVLVFASKKTTVDEIESQLAQK---GFKAAALH---- 501 (630)
Q Consensus 451 -------------------~~~~~k~~~l~~~l~~~---~~~~~iLIF~~s~~~~~~l~~~L~~~---~~~~~~ih---- 501 (630)
+....|+..+.+.+... ....++||||.++..|..|.++|... +++...+-
T Consensus 372 ~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~ 451 (746)
T KOG0354|consen 372 LIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGK 451 (746)
T ss_pred hhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccc
Confidence 00122333333333222 23457999999999999999999832 33333332
Q ss_pred ----CCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEEEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEecc
Q 006824 502 ----GDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ 577 (630)
Q Consensus 502 ----g~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~ 577 (630)
.+|+|.+..++++.|++|+++|||||+++++||||+.++.||.||...|+...+||.|| ||+- .|.++.+++.
T Consensus 452 s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa~--ns~~vll~t~ 528 (746)
T KOG0354|consen 452 STQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRAR--NSKCVLLTTG 528 (746)
T ss_pred cccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-cccc--CCeEEEEEcc
Confidence 48999999999999999999999999999999999999999999999999999999999 9985 6999999984
Q ss_pred c
Q 006824 578 K 578 (630)
Q Consensus 578 ~ 578 (630)
.
T Consensus 529 ~ 529 (746)
T KOG0354|consen 529 S 529 (746)
T ss_pred h
Confidence 4
No 74
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=1.3e-32 Score=312.10 Aligned_cols=334 Identities=23% Similarity=0.329 Sum_probs=256.8
Q ss_pred CHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHH
Q 006824 233 STQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAH 312 (630)
Q Consensus 233 ~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~ 312 (630)
...+..++.+.|+..|+++|.+|+..+.+|+|+|++.+||||||.+|++|++.+++..+ ..++|+|.||++||+
T Consensus 56 ~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~------~a~AL~lYPtnALa~ 129 (851)
T COG1205 56 DESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDP------SARALLLYPTNALAN 129 (851)
T ss_pred hhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCc------CccEEEEechhhhHh
Confidence 34457788888999999999999999999999999999999999999999999998875 337899999999999
Q ss_pred HHHHHHHHHhhhcC--ceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHcc----ccccCceeEEEecchhhhhc
Q 006824 313 QIYLETKKFAKSHG--IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK----ALTMSRVTYLVLDEADRMFD 386 (630)
Q Consensus 313 Q~~~~~~~~~~~~~--~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~----~~~l~~i~~lVvDEah~~~~ 386 (630)
.+.+.+.++....+ +.+....|.....+...-+.+.++||+|||.+|..++.+. ...++.+++|||||+|..-.
T Consensus 130 DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrG 209 (851)
T COG1205 130 DQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRG 209 (851)
T ss_pred hHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccc
Confidence 99999999998877 6666666666655554566778999999999998865443 23467799999999998543
Q ss_pred CCcHHHHHHHHhh-------cCCCCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcC-C------
Q 006824 387 LGFEPQIRSIVGQ-------IRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIP-S------ 452 (630)
Q Consensus 387 ~~~~~~v~~i~~~-------l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~-~------ 452 (630)
-|+.++..+++. .+...|+|+.|||+... ..++..+.+......+...+...... ..+..-+ .
T Consensus 210 -v~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np-~e~~~~l~~~~f~~~v~~~g~~~~~~-~~~~~~p~~~~~~~~ 286 (851)
T COG1205 210 -VQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANP-GEFAEELFGRDFEVPVDEDGSPRGLR-YFVRREPPIRELAES 286 (851)
T ss_pred -cchhHHHHHHHHHHHHHhccCCCceEEEEeccccCh-HHHHHHhcCCcceeeccCCCCCCCce-EEEEeCCcchhhhhh
Confidence 245555544433 34578999999999765 45677777766665444333333222 2222222 0
Q ss_pred -ccccHHHHHHhccCCC-CCCCEEEEccchhhHHHHH----HHHHhCC----CcEEEEeCCCCHHHHHHHHHHhhcCCce
Q 006824 453 -DAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIE----SQLAQKG----FKAAALHGDKDQASRMEILQKFKSGVYH 522 (630)
Q Consensus 453 -~~~k~~~l~~~l~~~~-~~~~iLIF~~s~~~~~~l~----~~L~~~~----~~~~~ihg~~~~~~r~~~~~~F~~g~~~ 522 (630)
...+...+..++.... .+-++|+|+.+...++.+. ..+...+ ..+..+++++...+|.++...|+.|+..
T Consensus 287 ~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~ 366 (851)
T COG1205 287 IRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELL 366 (851)
T ss_pred cccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCcc
Confidence 0122222222222111 3458999999999999996 4554555 6789999999999999999999999999
Q ss_pred EEEEcCCcccCCCCCCccEEEEeCCCC-CHHHHHHHhhhcccCCCCCeEEEEEec
Q 006824 523 VLIATDVAARGLDIKSIKSVVNFDIAR-DMDMHVHRIGRTGRAGDKDGTAYTLVT 576 (630)
Q Consensus 523 VLvaT~~~~~Gldi~~v~~VI~~~~p~-~~~~y~QriGR~gR~g~~~g~~~~l~~ 576 (630)
++++|.+++-|+||.++..||+++.|. +...++||.||+||.+ +.+..+.+..
T Consensus 367 ~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~-~~~l~~~v~~ 420 (851)
T COG1205 367 GVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRG-QESLVLVVLR 420 (851)
T ss_pred EEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCC-CCceEEEEeC
Confidence 999999999999999999999999999 8999999999999998 4455554444
No 75
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.4e-32 Score=302.01 Aligned_cols=321 Identities=17% Similarity=0.214 Sum_probs=221.2
Q ss_pred CCCcHHHHHHHHHHH-cC--CCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHh
Q 006824 246 EKPTSIQCQALPIIL-SG--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (630)
Q Consensus 246 ~~~~~~Q~~~i~~il-~g--~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 322 (630)
..|+|+|.+++..++ +| +..++++|||+|||++.+.. +.++ +.++|||||+..|+.||.+++.+|+
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~a-a~~l----------~k~tLILvps~~Lv~QW~~ef~~~~ 322 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTA-ACTV----------KKSCLVLCTSAVSVEQWKQQFKMWS 322 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHH-HHHh----------CCCEEEEeCcHHHHHHHHHHHHHhc
Confidence 468999999999988 34 47899999999999986543 3443 2348999999999999999999986
Q ss_pred hhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHcc--------ccccCceeEEEecchhhhhcCCcHHHHH
Q 006824 323 KSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK--------ALTMSRVTYLVLDEADRMFDLGFEPQIR 394 (630)
Q Consensus 323 ~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~--------~~~l~~i~~lVvDEah~~~~~~~~~~v~ 394 (630)
......+..++|+.... ......|+|+|++.+.....+. .+.-..+++||+||||++.. ....
T Consensus 323 ~l~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA----~~fr 393 (732)
T TIGR00603 323 TIDDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA----AMFR 393 (732)
T ss_pred CCCCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH----HHHH
Confidence 44344555555543221 1123789999999875432211 12224689999999999753 4455
Q ss_pred HHHhhcCCCCcEEEEeecccHHHHH--HHHHHcCCCeEEEEccccccc----ccceEEEEEcC-----------------
Q 006824 395 SIVGQIRPDRQTLLFSATMPRKVEK--LAREILSDPVRVTVGEVGMAN----EDITQVVHVIP----------------- 451 (630)
Q Consensus 395 ~i~~~l~~~~q~l~~SAT~~~~~~~--l~~~~~~~~~~i~~~~~~~~~----~~i~q~~~~~~----------------- 451 (630)
.++..+. .+..++||||+.++-.. .+..+++ |..+......... ..+...-..++
T Consensus 394 ~il~~l~-a~~RLGLTATP~ReD~~~~~L~~LiG-P~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k 471 (732)
T TIGR00603 394 RVLTIVQ-AHCKLGLTATLVREDDKITDLNFLIG-PKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKR 471 (732)
T ss_pred HHHHhcC-cCcEEEEeecCcccCCchhhhhhhcC-CeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhh
Confidence 5666654 34579999999754221 1223333 3222221111100 01111111111
Q ss_pred -----CccccHHHHHHhccCC-CCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcC-CceEE
Q 006824 452 -----SDAEKLPWLLEKLPGM-IDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSG-VYHVL 524 (630)
Q Consensus 452 -----~~~~k~~~l~~~l~~~-~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g-~~~VL 524 (630)
....|+..+..++... ....++||||.+...+..++..| + +..|||.+++.+|.++++.|+.| .+++|
T Consensus 472 ~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L---~--~~~I~G~ts~~ER~~il~~Fr~~~~i~vL 546 (732)
T TIGR00603 472 MLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL---G--KPFIYGPTSQQERMQILQNFQHNPKVNTI 546 (732)
T ss_pred hHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc---C--CceEECCCCHHHHHHHHHHHHhCCCccEE
Confidence 1223444443444322 24569999999999999888887 2 46699999999999999999875 88999
Q ss_pred EEcCCcccCCCCCCccEEEEeCCC-CCHHHHHHHhhhcccCCCCCeE-------EEEEecccc--HHHHHHHHHHHHHcC
Q 006824 525 IATDVAARGLDIKSIKSVVNFDIA-RDMDMHVHRIGRTGRAGDKDGT-------AYTLVTQKE--ARFAGELVNSLIAAG 594 (630)
Q Consensus 525 vaT~~~~~Gldi~~v~~VI~~~~p-~~~~~y~QriGR~gR~g~~~g~-------~~~l~~~~d--~~~~~~l~~~l~~~~ 594 (630)
|+|+++.+|+|+|++++||+++.| .|...|+||+||++|.+. .|. .|+|++... ..+..+-.++|...|
T Consensus 547 v~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~-~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq~fl~~qG 625 (732)
T TIGR00603 547 FLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKK-GSDAEEYNAFFYSLVSKDTQEMYYSTKRQRFLVDQG 625 (732)
T ss_pred EEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCC-CCccccccceEEEEecCCchHHHHHHHHHHHHHHCC
Confidence 999999999999999999999987 599999999999999983 333 488888754 455666677776654
No 76
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=2.9e-32 Score=306.67 Aligned_cols=329 Identities=20% Similarity=0.283 Sum_probs=263.3
Q ss_pred HHcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHH
Q 006824 241 SKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKK 320 (630)
Q Consensus 241 ~~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~ 320 (630)
...|...++|-|.++|..++.|+|+++.+|||.||+++|.+|++.. ++..|||.|..+|+..+...+.+
T Consensus 258 ~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~-----------~gitvVISPL~SLm~DQv~~L~~ 326 (941)
T KOG0351|consen 258 EVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL-----------GGVTVVISPLISLMQDQVTHLSK 326 (941)
T ss_pred HHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc-----------CCceEEeccHHHHHHHHHHhhhh
Confidence 4568899999999999999999999999999999999999999754 45789999999999877655533
Q ss_pred HhhhcCceEEEEECCCChHHH---HHHHHcC---CcEEEeChHHHHHHHH--ccccccCc---eeEEEecchhhhhcCC-
Q 006824 321 FAKSHGIRVSAVYGGMSKLDQ---FKELKAG---CEIVIATPGRLIDMLK--MKALTMSR---VTYLVLDEADRMFDLG- 388 (630)
Q Consensus 321 ~~~~~~~~~~~~~gg~~~~~~---~~~l~~~---~dIiv~Tp~~L~~~l~--~~~~~l~~---i~~lVvDEah~~~~~~- 388 (630)
. ++....+.++....++ ++.+..+ ++|+..||+++...-. .....+.. +.++||||||....|+
T Consensus 327 ~----~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgH 402 (941)
T KOG0351|consen 327 K----GIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGH 402 (941)
T ss_pred c----CcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcc
Confidence 3 8999999888877633 4445544 7999999999875322 12223444 8999999999999997
Q ss_pred -cHHHHHHHHhhc--CCCCcEEEEeecccHHHHHHHHHHcC--CCeEEEEcccccccccceEEEEEcCCc-cccHHHHHH
Q 006824 389 -FEPQIRSIVGQI--RPDRQTLLFSATMPRKVEKLAREILS--DPVRVTVGEVGMANEDITQVVHVIPSD-AEKLPWLLE 462 (630)
Q Consensus 389 -~~~~v~~i~~~l--~~~~q~l~~SAT~~~~~~~l~~~~~~--~~~~i~~~~~~~~~~~i~q~~~~~~~~-~~k~~~l~~ 462 (630)
|.+.++.+.... .+...+|++|||.+..++.-+-..++ +|..+. ......+....+. ... ......+..
T Consensus 403 dFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~---~sfnR~NL~yeV~--~k~~~~~~~~~~~ 477 (941)
T KOG0351|consen 403 DFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFK---SSFNRPNLKYEVS--PKTDKDALLDILE 477 (941)
T ss_pred cccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceec---ccCCCCCceEEEE--eccCccchHHHHH
Confidence 777776553222 24478999999999988776665554 444222 1222233333222 222 344455566
Q ss_pred hccCCCCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEE
Q 006824 463 KLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSV 542 (630)
Q Consensus 463 ~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~V 542 (630)
.+........+||||.++.+|+.++..|...++.+..+|++|+..+|..+-..|..++++|++||=+++.|+|-|+|+.|
T Consensus 478 ~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~V 557 (941)
T KOG0351|consen 478 ESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFV 557 (941)
T ss_pred HhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEE
Confidence 66666677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEeccccHHHHHHHHHHH
Q 006824 543 VNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSL 590 (630)
Q Consensus 543 I~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~~~~~l~~~l 590 (630)
|+|.+|.+++.|.|-+||+||.| ....|++|+...|...+..++..=
T Consensus 558 iH~~lPks~E~YYQE~GRAGRDG-~~s~C~l~y~~~D~~~l~~ll~s~ 604 (941)
T KOG0351|consen 558 IHYSLPKSFEGYYQEAGRAGRDG-LPSSCVLLYGYADISELRRLLTSG 604 (941)
T ss_pred EECCCchhHHHHHHhccccCcCC-CcceeEEecchhHHHHHHHHHHcc
Confidence 99999999999999999999999 689999999999887776665543
No 77
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=2.6e-32 Score=296.35 Aligned_cols=332 Identities=22% Similarity=0.272 Sum_probs=252.1
Q ss_pred cCCCCCcHHHHHHHHHHH-cCCCEEEEeCCCChHHHHHHHHHHHHHhcCC--cccccCCCeEEEEcccHHHHHHHHHHHH
Q 006824 243 QGYEKPTSIQCQALPIIL-SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQP--ELQKEEGPIGVICAPTRELAHQIYLETK 319 (630)
Q Consensus 243 ~~~~~~~~~Q~~~i~~il-~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~--~~~~~~~~~vLil~Ptr~La~Q~~~~~~ 319 (630)
.+|..++.+|+.++|.++ +..|+|+|||||||||.+|+|.+|+.+.... -....++-++++|+|+++||..+++.|.
T Consensus 106 f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~ 185 (1230)
T KOG0952|consen 106 FSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFS 185 (1230)
T ss_pred ccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHh
Confidence 366788999999999988 4579999999999999999999998886521 1233567899999999999999999999
Q ss_pred HHhhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHcc---ccccCceeEEEecchhhhhcCCcHHHHHHH
Q 006824 320 KFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK---ALTMSRVTYLVLDEADRMFDLGFEPQIRSI 396 (630)
Q Consensus 320 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~---~~~l~~i~~lVvDEah~~~~~~~~~~v~~i 396 (630)
+-+..+|++|.-++|.......- -..++|||+||+++--.-++. ...++.+.+|||||+|.+-+ ..++.++.|
T Consensus 186 kkl~~~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd-~RGpvlEti 261 (1230)
T KOG0952|consen 186 KKLAPLGISVRELTGDTQLTKTE---IADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHD-DRGPVLETI 261 (1230)
T ss_pred hhcccccceEEEecCcchhhHHH---HHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcC-cccchHHHH
Confidence 98888999999999987655432 224999999999884433322 22357799999999998654 457777777
Q ss_pred HhhcC-------CCCcEEEEeecccHHHHHHHHHHcCCC-eEEEEcccccccccceEEEEEcCCcc--c--------cHH
Q 006824 397 VGQIR-------PDRQTLLFSATMPRKVEKLAREILSDP-VRVTVGEVGMANEDITQVVHVIPSDA--E--------KLP 458 (630)
Q Consensus 397 ~~~l~-------~~~q~l~~SAT~~~~~~~l~~~~~~~~-~~i~~~~~~~~~~~i~q~~~~~~~~~--~--------k~~ 458 (630)
+.... ...++|++|||+|+ .++++.++-.|| ..+...........+.+.+.-+.... . ...
T Consensus 262 VaRtlr~vessqs~IRivgLSATlPN-~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~ 340 (1230)
T KOG0952|consen 262 VARTLRLVESSQSMIRIVGLSATLPN-YEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYD 340 (1230)
T ss_pred HHHHHHHHHhhhhheEEEEeeccCCC-HHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHH
Confidence 66543 56789999999985 577888776663 33333334445555666665554331 1 112
Q ss_pred HHHHhccCCCCCCCEEEEccchhhHHHHHHHHHhC-----------------------CCcEEEEeCCCCHHHHHHHHHH
Q 006824 459 WLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK-----------------------GFKAAALHGDKDQASRMEILQK 515 (630)
Q Consensus 459 ~l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~-----------------------~~~~~~ihg~~~~~~r~~~~~~ 515 (630)
.+.+.+ ..+.+++|||.++....+.++.|.+. ...++.+|.||...+|..+...
T Consensus 341 kv~e~~---~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~ 417 (1230)
T KOG0952|consen 341 KVVEFL---QEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKE 417 (1230)
T ss_pred HHHHHH---HcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHH
Confidence 223333 24678999999999999999998763 1347889999999999999999
Q ss_pred hhcCCceEEEEcCCcccCCCCCCccEEEE-----eCCCC------CHHHHHHHhhhcccCC-CCCeEEEEEeccccHHHH
Q 006824 516 FKSGVYHVLIATDVAARGLDIKSIKSVVN-----FDIAR------DMDMHVHRIGRTGRAG-DKDGTAYTLVTQKEARFA 583 (630)
Q Consensus 516 F~~g~~~VLvaT~~~~~Gldi~~v~~VI~-----~~~p~------~~~~y~QriGR~gR~g-~~~g~~~~l~~~~d~~~~ 583 (630)
|..|-++||+||..+++|+|+|.- +||+ ||... .+.+.+|..||+||.+ +..|.++++.+..-....
T Consensus 418 F~~G~i~vL~cTaTLAwGVNLPA~-aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y 496 (1230)
T KOG0952|consen 418 FKEGHIKVLCCTATLAWGVNLPAY-AVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHY 496 (1230)
T ss_pred HhcCCceEEEecceeeeccCCcce-EEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHH
Confidence 999999999999999999999974 4554 44333 4678899999999988 667888888876654444
No 78
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=2e-32 Score=270.93 Aligned_cols=332 Identities=21% Similarity=0.294 Sum_probs=243.5
Q ss_pred HHHHHHHc-CCCCC-cHHHHHHHHHHHcC-CCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHH
Q 006824 236 LMHAISKQ-GYEKP-TSIQCQALPIILSG-RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAH 312 (630)
Q Consensus 236 l~~~l~~~-~~~~~-~~~Q~~~i~~il~g-~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~ 312 (630)
+.++|++. |+.++ ++.|.+|+..+..+ +|+.+++|||+||+++|.||+|.+ +.+.||+.|..+|+.
T Consensus 7 VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~-----------~gITIV~SPLiALIk 75 (641)
T KOG0352|consen 7 VREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH-----------GGITIVISPLIALIK 75 (641)
T ss_pred HHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh-----------CCeEEEehHHHHHHH
Confidence 44555554 55554 68999999998866 799999999999999999999987 447899999999999
Q ss_pred HHHHHHHHHhhhcCceEEEEECCCChHH---HHHHHH---cCCcEEEeChHHHHHHHHc----cccccCceeEEEecchh
Q 006824 313 QIYLETKKFAKSHGIRVSAVYGGMSKLD---QFKELK---AGCEIVIATPGRLIDMLKM----KALTMSRVTYLVLDEAD 382 (630)
Q Consensus 313 Q~~~~~~~~~~~~~~~~~~~~gg~~~~~---~~~~l~---~~~dIiv~Tp~~L~~~l~~----~~~~l~~i~~lVvDEah 382 (630)
...+-+.++ .+.+..+.+-.+..+ .+.+|. ....|+..||++...-.-. ...+-.-+.|+||||||
T Consensus 76 DQiDHL~~L----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAH 151 (641)
T KOG0352|consen 76 DQIDHLKRL----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAH 151 (641)
T ss_pred HHHHHHHhc----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhh
Confidence 888877776 444444444333322 222232 3467999999876432111 11123457899999999
Q ss_pred hhhcCC--cHHHHHHH--HhhcCCCCcEEEEeecccHHHHHHHHH--HcCCCeEEEEcccccccccceE---EEEEcCCc
Q 006824 383 RMFDLG--FEPQIRSI--VGQIRPDRQTLLFSATMPRKVEKLARE--ILSDPVRVTVGEVGMANEDITQ---VVHVIPSD 453 (630)
Q Consensus 383 ~~~~~~--~~~~v~~i--~~~l~~~~q~l~~SAT~~~~~~~l~~~--~~~~~~~i~~~~~~~~~~~i~q---~~~~~~~~ 453 (630)
...+|| |.+.+..+ +...-+....+++|||.++.+++.+-. .+++|+.+.-.... ..++.. +...+.
T Consensus 152 CVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~F--R~NLFYD~~~K~~I~-- 227 (641)
T KOG0352|consen 152 CVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTF--RDNLFYDNHMKSFIT-- 227 (641)
T ss_pred hHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcch--hhhhhHHHHHHHHhh--
Confidence 999997 66554433 222235778999999999998775543 45667654322111 111100 001111
Q ss_pred cccHHHHHHhccCCC------------CCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCc
Q 006824 454 AEKLPWLLEKLPGMI------------DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVY 521 (630)
Q Consensus 454 ~~k~~~l~~~l~~~~------------~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~ 521 (630)
+-+..|.++-...+ ..|--||||.|+..|+.++-.|...|++...+|.|+...+|.++-+.|++|++
T Consensus 228 -D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~ 306 (641)
T KOG0352|consen 228 -DCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEI 306 (641)
T ss_pred -hHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCC
Confidence 11222222211111 13457999999999999999999999999999999999999999999999999
Q ss_pred eEEEEcCCcccCCCCCCccEEEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEeccccHHHHHHHHH
Q 006824 522 HVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVN 588 (630)
Q Consensus 522 ~VLvaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~~~~~l~~ 588 (630)
+|++||..+++|+|-|+|+.||++++|.|..-|.|-.||+||.| ++..|..+++.+|...+.-|++
T Consensus 307 PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDG-k~SyCRLYYsR~D~~~i~FLi~ 372 (641)
T KOG0352|consen 307 PVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDG-KRSYCRLYYSRQDKNALNFLVS 372 (641)
T ss_pred CEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCC-CccceeeeecccchHHHHHHHh
Confidence 99999999999999999999999999999999999999999999 7899999999999876655544
No 79
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=4.9e-31 Score=303.24 Aligned_cols=302 Identities=21% Similarity=0.321 Sum_probs=213.4
Q ss_pred HHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcc----cHHHHHHHHHHHHH-Hhhhc
Q 006824 251 IQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAP----TRELAHQIYLETKK-FAKSH 325 (630)
Q Consensus 251 ~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~P----tr~La~Q~~~~~~~-~~~~~ 325 (630)
+-.+.+..+..++.++++|+||||||. .+|.+...... +....+++.-| +++||.++.+++.. ++...
T Consensus 78 ~r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g~-----g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~V 150 (1294)
T PRK11131 78 KKQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELGR-----GVKGLIGHTQPRRLAARTVANRIAEELETELGGCV 150 (1294)
T ss_pred HHHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcCC-----CCCCceeeCCCcHHHHHHHHHHHHHHHhhhhccee
Confidence 444566777788888999999999997 47865553321 11123334446 56888888777764 32222
Q ss_pred CceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchh-hhhcCCcHHH-HHHHHhhcCCC
Q 006824 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEAD-RMFDLGFEPQ-IRSIVGQIRPD 403 (630)
Q Consensus 326 ~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah-~~~~~~~~~~-v~~i~~~l~~~ 403 (630)
|+.+ ...+ ....++.|+|+||++|.+.+.... .++.+++||||||| ++++.+|... +..++.. +++
T Consensus 151 GY~v----rf~~------~~s~~t~I~v~TpG~LL~~l~~d~-~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~-rpd 218 (1294)
T PRK11131 151 GYKV----RFND------QVSDNTMVKLMTDGILLAEIQQDR-LLMQYDTIIIDEAHERSLNIDFILGYLKELLPR-RPD 218 (1294)
T ss_pred ceee----cCcc------ccCCCCCEEEEChHHHHHHHhcCC-ccccCcEEEecCccccccccchHHHHHHHhhhc-CCC
Confidence 3221 1111 113468999999999999987654 48999999999999 6888887653 3343332 467
Q ss_pred CcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCc-----cccHHHHHHhccC--CCCCCCEEEE
Q 006824 404 RQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSD-----AEKLPWLLEKLPG--MIDDGDVLVF 476 (630)
Q Consensus 404 ~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~-----~~k~~~l~~~l~~--~~~~~~iLIF 476 (630)
.|+|+||||++. ..+.+.|...|+ +.+... ...+.+.+...... ......++..+.. ....+.+|||
T Consensus 219 lKvILmSATid~--e~fs~~F~~apv-I~V~Gr---~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVF 292 (1294)
T PRK11131 219 LKVIITSATIDP--ERFSRHFNNAPI-IEVSGR---TYPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIF 292 (1294)
T ss_pred ceEEEeeCCCCH--HHHHHHcCCCCE-EEEcCc---cccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 899999999975 356666655564 444322 22344444433221 1122333332221 1245789999
Q ss_pred ccchhhHHHHHHHHHhCCCc---EEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEEEEeCC------
Q 006824 477 ASKKTTVDEIESQLAQKGFK---AAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDI------ 547 (630)
Q Consensus 477 ~~s~~~~~~l~~~L~~~~~~---~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~------ 547 (630)
+++..+++.+++.|...++. +..+||++++.+|..+++. .|..+|||||+++++|||||+|++||+++.
T Consensus 293 Lpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Y 370 (1294)
T PRK11131 293 MSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRY 370 (1294)
T ss_pred cCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCcccccc
Confidence 99999999999999987664 6789999999999999875 578899999999999999999999999863
Q ss_pred ---------C---CCHHHHHHHhhhcccCCCCCeEEEEEeccccHH
Q 006824 548 ---------A---RDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEAR 581 (630)
Q Consensus 548 ---------p---~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~ 581 (630)
| -|...|.||+||+||.+ +|.||.|++..+..
T Consensus 371 d~~~~~~~Lp~~~iSkasa~QRaGRAGR~~--~G~c~rLyte~d~~ 414 (1294)
T PRK11131 371 SYRTKVQRLPIEPISQASANQRKGRCGRVS--EGICIRLYSEDDFL 414 (1294)
T ss_pred ccccCcccCCeeecCHhhHhhhccccCCCC--CcEEEEeCCHHHHH
Confidence 3 35578999999999996 79999999987644
No 80
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=1.5e-30 Score=295.69 Aligned_cols=333 Identities=18% Similarity=0.182 Sum_probs=214.8
Q ss_pred CCCcHHHHHHHHHHHcC--CCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhh
Q 006824 246 EKPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (630)
Q Consensus 246 ~~~~~~Q~~~i~~il~g--~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~ 323 (630)
..|.|+|..++..++.. ..+|+..++|.|||+.+.+.+-..+.. +...++|||||+ .|+.||..++.+.+
T Consensus 151 ~~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~------g~~~rvLIVvP~-sL~~QW~~El~~kF- 222 (956)
T PRK04914 151 ASLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLT------GRAERVLILVPE-TLQHQWLVEMLRRF- 222 (956)
T ss_pred CCCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHc------CCCCcEEEEcCH-HHHHHHHHHHHHHh-
Confidence 46899999999877644 478999999999998876555443332 223469999997 89999999986654
Q ss_pred hcCceEEEEECCCChHHHH---HHHHcCCcEEEeChHHHHHHHH-ccccccCceeEEEecchhhhhcCC--cHHHHHHHH
Q 006824 324 SHGIRVSAVYGGMSKLDQF---KELKAGCEIVIATPGRLIDMLK-MKALTMSRVTYLVLDEADRMFDLG--FEPQIRSIV 397 (630)
Q Consensus 324 ~~~~~~~~~~gg~~~~~~~---~~l~~~~dIiv~Tp~~L~~~l~-~~~~~l~~i~~lVvDEah~~~~~~--~~~~v~~i~ 397 (630)
++...++.++. ..... ...+...+++|+|++.+...-. ...+.-..+++|||||||++.... -......+.
T Consensus 223 --~l~~~i~~~~~-~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~ 299 (956)
T PRK04914 223 --NLRFSLFDEER-YAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVE 299 (956)
T ss_pred --CCCeEEEcCcc-hhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHH
Confidence 45444433321 11000 0111236899999988765211 112223478999999999986311 112222232
Q ss_pred hhcCCCCcEEEEeecccH-HHH-------------------------------HHHHHHcC-CC----------------
Q 006824 398 GQIRPDRQTLLFSATMPR-KVE-------------------------------KLAREILS-DP---------------- 428 (630)
Q Consensus 398 ~~l~~~~q~l~~SAT~~~-~~~-------------------------------~l~~~~~~-~~---------------- 428 (630)
........++++||||-. ..+ .++..++. .+
T Consensus 300 ~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~ 379 (956)
T PRK04914 300 QLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQ 379 (956)
T ss_pred HHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhccc
Confidence 222344678999999842 000 00010000 00
Q ss_pred ---------------------------------eEEEEcccc----cccccceEEEEE-c--------------------
Q 006824 429 ---------------------------------VRVTVGEVG----MANEDITQVVHV-I-------------------- 450 (630)
Q Consensus 429 ---------------------------------~~i~~~~~~----~~~~~i~q~~~~-~-------------------- 450 (630)
..+...... .......+.+.. +
T Consensus 380 ~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l 459 (956)
T PRK04914 380 DIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDML 459 (956)
T ss_pred chhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhc
Confidence 000000000 000000011000 0
Q ss_pred ---------------CCccccHHHHHHhccCCCCCCCEEEEccchhhHHHHHHHHH-hCCCcEEEEeCCCCHHHHHHHHH
Q 006824 451 ---------------PSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLA-QKGFKAAALHGDKDQASRMEILQ 514 (630)
Q Consensus 451 ---------------~~~~~k~~~l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~-~~~~~~~~ihg~~~~~~r~~~~~ 514 (630)
...+.|..+|...+... ...++||||+++..+..+...|. ..|+.+..+||+|++.+|.++++
T Consensus 460 ~pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~-~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~ 538 (956)
T PRK04914 460 YPEQIYQEFEDNATWWNFDPRVEWLIDFLKSH-RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAA 538 (956)
T ss_pred CHHHHHHHHhhhhhccccCHHHHHHHHHHHhc-CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHH
Confidence 01123566677766654 35799999999999999999995 56999999999999999999999
Q ss_pred HhhcC--CceEEEEcCCcccCCCCCCccEEEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEeccccHHHHHHHHHHHH
Q 006824 515 KFKSG--VYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLI 591 (630)
Q Consensus 515 ~F~~g--~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~~~~~l~~~l~ 591 (630)
.|+++ ...|||||+++++|+|++.+++|||||+|+||..|.||+||+||.|+ .+.+.+++..........+.+.+.
T Consensus 539 ~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ-~~~V~i~~~~~~~t~~e~i~~~~~ 616 (956)
T PRK04914 539 YFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQ-KHDIQIHVPYLEGTAQERLFRWYH 616 (956)
T ss_pred HHhcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCC-CceEEEEEccCCCCHHHHHHHHHh
Confidence 99984 58999999999999999999999999999999999999999999994 455555544333233344444443
No 81
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.97 E-value=1.8e-30 Score=253.44 Aligned_cols=359 Identities=19% Similarity=0.303 Sum_probs=265.7
Q ss_pred cCCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEccc
Q 006824 229 DCGFSTQLMHAISK-QGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPT 307 (630)
Q Consensus 229 ~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Pt 307 (630)
+++.+.+..+.|+. ....+++|.|..+|+..+.|.+++++.|||.||+++|.+|+|.. ...+|||||.
T Consensus 75 ~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a-----------dg~alvi~pl 143 (695)
T KOG0353|consen 75 DFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA-----------DGFALVICPL 143 (695)
T ss_pred CCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc-----------CCceEeechh
Confidence 34455555555543 36688999999999999999999999999999999999999875 4558999999
Q ss_pred HHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHH---H---HcCCcEEEeChHHHHHH---HHc--cccccCceeEE
Q 006824 308 RELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE---L---KAGCEIVIATPGRLIDM---LKM--KALTMSRVTYL 376 (630)
Q Consensus 308 r~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l---~~~~dIiv~Tp~~L~~~---l~~--~~~~l~~i~~l 376 (630)
..|+....-.++.+ |+....+....++.+..+- + .+...+|..||+.+... +.+ ..+....+.+|
T Consensus 144 islmedqil~lkql----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~i 219 (695)
T KOG0353|consen 144 ISLMEDQILQLKQL----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLI 219 (695)
T ss_pred HHHHHHHHHHHHHh----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEE
Confidence 99998877777776 7777777666665443221 1 12357899999988642 222 23446678999
Q ss_pred EecchhhhhcCC--cHHHHH--HHHhhcCCCCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCC
Q 006824 377 VLDEADRMFDLG--FEPQIR--SIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPS 452 (630)
Q Consensus 377 VvDEah~~~~~~--~~~~v~--~i~~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~ 452 (630)
.+||+|....|| |.+.+. .|+..--+...+++++||.++.+..-+..++.--..++. ..+...++....+..-+.
T Consensus 220 aidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf-~a~fnr~nl~yev~qkp~ 298 (695)
T KOG0353|consen 220 AIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTF-RAGFNRPNLKYEVRQKPG 298 (695)
T ss_pred eecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhhee-ecccCCCCceeEeeeCCC
Confidence 999999999987 555443 344444467889999999998887777766543222221 122333344333333332
Q ss_pred -ccccHHHHHHhccCCCCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcc
Q 006824 453 -DAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAA 531 (630)
Q Consensus 453 -~~~k~~~l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~ 531 (630)
.++-...+..++..-..+..-||||-+..+|+.++..|+..|+....+|.+|.+.+|.-+-+.|..|++.|+|+|-+++
T Consensus 299 n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafg 378 (695)
T KOG0353|consen 299 NEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFG 378 (695)
T ss_pred ChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeec
Confidence 2233445555665554555679999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCccEEEEeCCCCCHHHHHH-------------------------------------------HhhhcccCCCCC
Q 006824 532 RGLDIKSIKSVVNFDIARDMDMHVH-------------------------------------------RIGRTGRAGDKD 568 (630)
Q Consensus 532 ~Gldi~~v~~VI~~~~p~~~~~y~Q-------------------------------------------riGR~gR~g~~~ 568 (630)
.|+|-|+|+.||+..+|.+++.|.| -.||+||.+ .+
T Consensus 379 mgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~-~~ 457 (695)
T KOG0353|consen 379 MGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDD-MK 457 (695)
T ss_pred ccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCC-Cc
Confidence 9999999999999999999999999 568999988 46
Q ss_pred eEEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006824 569 GTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLA 605 (630)
Q Consensus 569 g~~~~l~~~~d~~~~~~l~~~l~~~~~~vp~~L~~la 605 (630)
..|+.++--.|.-....+|. ++..|+.--.+|...|
T Consensus 458 a~cilyy~~~difk~ssmv~-~e~~g~q~ly~mv~y~ 493 (695)
T KOG0353|consen 458 ADCILYYGFADIFKISSMVQ-MENTGIQKLYEMVRYA 493 (695)
T ss_pred ccEEEEechHHHHhHHHHHH-HHhhhHHHHHHHHHHH
Confidence 88999888776555554444 3344433333344333
No 82
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.97 E-value=3.2e-30 Score=249.99 Aligned_cols=202 Identities=54% Similarity=0.880 Sum_probs=185.9
Q ss_pred cccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcc
Q 006824 227 FEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAP 306 (630)
Q Consensus 227 ~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~P 306 (630)
|+++++++.+.+.+.+.|+..|+++|.++++.+++|+++++++|||+|||++|++|++.++...+ ..+++++||++|
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~---~~~~~~viii~p 77 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP---KKDGPQALILAP 77 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc---ccCCceEEEEcC
Confidence 67889999999999999999999999999999999999999999999999999999999987653 235789999999
Q ss_pred cHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhc
Q 006824 307 TRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFD 386 (630)
Q Consensus 307 tr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~ 386 (630)
|++|+.|+...+..+....++.+..++|+.........+..+++|+|+||+.|..++......+..++++|+||+|.+.+
T Consensus 78 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~ 157 (203)
T cd00268 78 TRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLD 157 (203)
T ss_pred CHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhc
Confidence 99999999999999988778999999999888777777766899999999999999988877889999999999999999
Q ss_pred CCcHHHHHHHHhhcCCCCcEEEEeecccHHHHHHHHHHcCCCeEE
Q 006824 387 LGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRV 431 (630)
Q Consensus 387 ~~~~~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i 431 (630)
.++...+..++..++..+|++++|||+++.+..++..++.+|+.+
T Consensus 158 ~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 158 MGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred cChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 999999999999999999999999999999999999999988765
No 83
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.97 E-value=3.7e-29 Score=280.96 Aligned_cols=312 Identities=20% Similarity=0.275 Sum_probs=216.2
Q ss_pred CCCcHHHHHHHHHHHcC---CCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHh
Q 006824 246 EKPTSIQCQALPIILSG---RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (630)
Q Consensus 246 ~~~~~~Q~~~i~~il~g---~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 322 (630)
..|++.|.++++.+..+ +++++.++||||||.+|+.++...+. .|..+|||+||++|+.|+++.+++.+
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~--------~g~~vLvLvPt~~L~~Q~~~~l~~~f 214 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLA--------QGKQALVLVPEIALTPQMLARFRARF 214 (679)
T ss_pred CCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHH--------cCCeEEEEeCcHHHHHHHHHHHHHHh
Confidence 36999999999999874 78999999999999999877665542 26679999999999999999888754
Q ss_pred hhcCceEEEEECCCChHHH---HHHHHc-CCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCc---HHHHHH
Q 006824 323 KSHGIRVSAVYGGMSKLDQ---FKELKA-GCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGF---EPQIRS 395 (630)
Q Consensus 323 ~~~~~~~~~~~gg~~~~~~---~~~l~~-~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~---~~~v~~ 395 (630)
+..+..++|+.+..+. +..+.. ..+|+|+|+..+. ..++++++|||||+|.....+. ..+.+.
T Consensus 215 ---g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~ 284 (679)
T PRK05580 215 ---GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARD 284 (679)
T ss_pred ---CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHHH
Confidence 6788899998876544 333433 4799999998764 3578899999999998653321 111222
Q ss_pred --HHhhcCCCCcEEEEeecccHHHHHHHHHHcCCCeEEEEccc--ccccccceEEEEEcC---C-c-cccHHHHHHhccC
Q 006824 396 --IVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEV--GMANEDITQVVHVIP---S-D-AEKLPWLLEKLPG 466 (630)
Q Consensus 396 --i~~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~--~~~~~~i~q~~~~~~---~-~-~~k~~~l~~~l~~ 466 (630)
++.....+.|+|++|||++.+....+.. +....+..... +.....+ ..+..-. . . ..-...+++.+.+
T Consensus 285 va~~ra~~~~~~~il~SATps~~s~~~~~~--g~~~~~~l~~r~~~~~~p~v-~~id~~~~~~~~~~~~ls~~l~~~i~~ 361 (679)
T PRK05580 285 LAVVRAKLENIPVVLGSATPSLESLANAQQ--GRYRLLRLTKRAGGARLPEV-EIIDMRELLRGENGSFLSPPLLEAIKQ 361 (679)
T ss_pred HHHHHhhccCCCEEEEcCCCCHHHHHHHhc--cceeEEEeccccccCCCCeE-EEEechhhhhhcccCCCCHHHHHHHHH
Confidence 2333456789999999988665444321 11112211111 1111111 1111000 0 0 0011234444443
Q ss_pred CCC-CCCEEEEccch------------------------------------------------------------hhHHH
Q 006824 467 MID-DGDVLVFASKK------------------------------------------------------------TTVDE 485 (630)
Q Consensus 467 ~~~-~~~iLIF~~s~------------------------------------------------------------~~~~~ 485 (630)
... +.++|||+|++ ..+++
T Consensus 362 ~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~ 441 (679)
T PRK05580 362 RLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTER 441 (679)
T ss_pred HHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHH
Confidence 333 34788887752 24567
Q ss_pred HHHHHHhC--CCcEEEEeCCCCH--HHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEEEEeCCC--CC---------
Q 006824 486 IESQLAQK--GFKAAALHGDKDQ--ASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIA--RD--------- 550 (630)
Q Consensus 486 l~~~L~~~--~~~~~~ihg~~~~--~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p--~~--------- 550 (630)
+++.|.+. +.++..+|+++.+ .+++.+++.|++|+..|||+|+++++|+|+|+|+.|+.++.. -+
T Consensus 442 ~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er 521 (679)
T PRK05580 442 LEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASER 521 (679)
T ss_pred HHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHH
Confidence 78888775 7889999999864 678999999999999999999999999999999999766543 22
Q ss_pred -HHHHHHHhhhcccCCCCCeEEEEEecccc
Q 006824 551 -MDMHVHRIGRTGRAGDKDGTAYTLVTQKE 579 (630)
Q Consensus 551 -~~~y~QriGR~gR~g~~~g~~~~l~~~~d 579 (630)
...|+|++||+||.+ +.|.+++.....+
T Consensus 522 ~~~~l~q~~GRagR~~-~~g~viiqT~~p~ 550 (679)
T PRK05580 522 TFQLLTQVAGRAGRAE-KPGEVLIQTYHPE 550 (679)
T ss_pred HHHHHHHHHhhccCCC-CCCEEEEEeCCCC
Confidence 257899999999987 6799887665443
No 84
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.97 E-value=9.2e-29 Score=262.78 Aligned_cols=345 Identities=23% Similarity=0.311 Sum_probs=263.0
Q ss_pred HHHHHHH-HHcCCCCCcHHHHHHHHHHHcC------CCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcc
Q 006824 234 TQLMHAI-SKQGYEKPTSIQCQALPIILSG------RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAP 306 (630)
Q Consensus 234 ~~l~~~l-~~~~~~~~~~~Q~~~i~~il~g------~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~P 306 (630)
..+++.+ ....| +||..|++++.-|... -+-+++|..|||||+++++.++..+- +|..+..++|
T Consensus 249 ~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~--------~G~Q~ALMAP 319 (677)
T COG1200 249 GELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE--------AGYQAALMAP 319 (677)
T ss_pred HHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHH--------cCCeeEEecc
Confidence 3344443 44455 7999999999998844 35699999999999999999988863 3777999999
Q ss_pred cHHHHHHHHHHHHHHhhhcCceEEEEECCCChH---HHHHHHHcC-CcEEEeChHHHHHHHHccccccCceeEEEecchh
Q 006824 307 TRELAHQIYLETKKFAKSHGIRVSAVYGGMSKL---DQFKELKAG-CEIVIATPGRLIDMLKMKALTMSRVTYLVLDEAD 382 (630)
Q Consensus 307 tr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~---~~~~~l~~~-~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah 382 (630)
|--||.|.+..+.+++..+|+++..++|..+.. .....+.+| .+|+|+|..-+ .....++++.++|+||-|
T Consensus 320 TEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALi-----Qd~V~F~~LgLVIiDEQH 394 (677)
T COG1200 320 TEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALI-----QDKVEFHNLGLVIIDEQH 394 (677)
T ss_pred HHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhh-----hcceeecceeEEEEeccc
Confidence 999999999999999999999999999976644 334455666 89999996444 345568899999999999
Q ss_pred hhhcCCcHHHHHHHHhhcCC-CCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCccccHHHHH
Q 006824 383 RMFDLGFEPQIRSIVGQIRP-DRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLL 461 (630)
Q Consensus 383 ~~~~~~~~~~v~~i~~~l~~-~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~ 461 (630)
| |+-+-+..+..-.. .+.+++||||+-|. .++-..+++-....+...+.-...|....... .+...++
T Consensus 395 R-----FGV~QR~~L~~KG~~~Ph~LvMTATPIPR--TLAlt~fgDldvS~IdElP~GRkpI~T~~i~~----~~~~~v~ 463 (677)
T COG1200 395 R-----FGVHQRLALREKGEQNPHVLVMTATPIPR--TLALTAFGDLDVSIIDELPPGRKPITTVVIPH----ERRPEVY 463 (677)
T ss_pred c-----ccHHHHHHHHHhCCCCCcEEEEeCCCchH--HHHHHHhccccchhhccCCCCCCceEEEEecc----ccHHHHH
Confidence 9 56666666666666 68999999998665 35666666655544544444444554444322 3445555
Q ss_pred HhccCC-CCCCCEEEEccchhhH--------HHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCc
Q 006824 462 EKLPGM-IDDGDVLVFASKKTTV--------DEIESQLAQK--GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVA 530 (630)
Q Consensus 462 ~~l~~~-~~~~~iLIF~~s~~~~--------~~l~~~L~~~--~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~ 530 (630)
+.+... ..+.++-|.||-.++. ..++..|+.. ++.++.+||.|+..++.+++..|++|+++|||||.+.
T Consensus 464 e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVI 543 (677)
T COG1200 464 ERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVI 543 (677)
T ss_pred HHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEE
Confidence 544433 2456889999877654 4566666643 6779999999999999999999999999999999999
Q ss_pred ccCCCCCCccEEEEeCCCC-CHHHHHHHhhhcccCCCCCeEEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHHH
Q 006824 531 ARGLDIKSIKSVVNFDIAR-DMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDL 604 (630)
Q Consensus 531 ~~Gldi~~v~~VI~~~~p~-~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~~~~~l~~~l~~~~~~vp~~L~~l 604 (630)
+.|+|+|+++.+|+++.-. ..++.-|--||+||.+ ..+.|+.++.+.......+-++.+.....-+-..=.+|
T Consensus 544 EVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~-~qSyC~Ll~~~~~~~~a~~RL~im~~t~DGF~IAE~DL 617 (677)
T COG1200 544 EVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGD-LQSYCVLLYKPPLSEVAKQRLKIMRETTDGFVIAEEDL 617 (677)
T ss_pred EecccCCCCeEEEEechhhhhHHHHHHhccccCCCC-cceEEEEEeCCCCChhHHHHHHHHHhcCCcceehhhhH
Confidence 9999999999999988643 5667778889999977 67999999998876777777788877665544333333
No 85
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=2e-29 Score=278.92 Aligned_cols=329 Identities=19% Similarity=0.219 Sum_probs=231.8
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcC
Q 006824 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (630)
Q Consensus 247 ~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~ 326 (630)
.|++.|.-+--.+ .+.-|..++||+|||++|++|++.+++. |..++||+||++||.|.++++..++..+|
T Consensus 82 ~~ydvQliGg~~L--h~G~Iaem~TGeGKTL~a~Lpa~~~al~--------G~~V~VvTpn~yLA~qd~e~m~~l~~~lG 151 (896)
T PRK13104 82 RHFDVQLIGGMVL--HEGNIAEMRTGEGKTLVATLPAYLNAIS--------GRGVHIVTVNDYLAKRDSQWMKPIYEFLG 151 (896)
T ss_pred CcchHHHhhhhhh--ccCccccccCCCCchHHHHHHHHHHHhc--------CCCEEEEcCCHHHHHHHHHHHHHHhcccC
Confidence 3555555544444 4455999999999999999999987753 44599999999999999999999999999
Q ss_pred ceEEEEECCCChHHHHHHHHcCCcEEEeChHHH-HHHHHcc-cccc-----CceeEEEecchhhhhc-C-----------
Q 006824 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRL-IDMLKMK-ALTM-----SRVTYLVLDEADRMFD-L----------- 387 (630)
Q Consensus 327 ~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L-~~~l~~~-~~~l-----~~i~~lVvDEah~~~~-~----------- 387 (630)
+++.+++||.+.......+ .++|+++||++| .+++..+ .+.+ +.+.++||||||+|+- .
T Consensus 152 Ltv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg~~ 229 (896)
T PRK13104 152 LTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISGAA 229 (896)
T ss_pred ceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeeeCCC
Confidence 9999999998877664443 599999999999 8988765 2333 5899999999999742 0
Q ss_pred ----CcHHHHHHHHhhcCC--------------CCcEEEE----------------------------------------
Q 006824 388 ----GFEPQIRSIVGQIRP--------------DRQTLLF---------------------------------------- 409 (630)
Q Consensus 388 ----~~~~~v~~i~~~l~~--------------~~q~l~~---------------------------------------- 409 (630)
.....+..+...+.. ..+.+.+
T Consensus 230 ~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~aL 309 (896)
T PRK13104 230 EDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNAAL 309 (896)
T ss_pred ccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHHHH
Confidence 011112222222211 1122222
Q ss_pred ----------------------------------------------------------------------------eecc
Q 006824 410 ----------------------------------------------------------------------------SATM 413 (630)
Q Consensus 410 ----------------------------------------------------------------------------SAT~ 413 (630)
|+|.
T Consensus 310 ~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGTa 389 (896)
T PRK13104 310 KAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTGTA 389 (896)
T ss_pred HHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCCCC
Confidence 2222
Q ss_pred cHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCccccHHHHHHhccCCC-CCCCEEEEccchhhHHHHHHHHHh
Q 006824 414 PRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQ 492 (630)
Q Consensus 414 ~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~-~~~~iLIF~~s~~~~~~l~~~L~~ 492 (630)
..+-.++...|-- ++.+.. ...........-.++.....|+..+++.+.... .+.|+||||+|+..++.++..|.+
T Consensus 390 ~te~~Ef~~iY~l-~Vv~IP--tnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~ 466 (896)
T PRK13104 390 DTEAYEFQQIYNL-EVVVIP--TNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKK 466 (896)
T ss_pred hhHHHHHHHHhCC-CEEECC--CCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHH
Confidence 2221111111111 111000 000000111111223345568888887775543 456999999999999999999999
Q ss_pred CCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCC----------------------------------
Q 006824 493 KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKS---------------------------------- 538 (630)
Q Consensus 493 ~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~---------------------------------- 538 (630)
.|+++..+|+.+.+.++..+.+.|+.|. |+|||++++||+||.-
T Consensus 467 ~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 544 (896)
T PRK13104 467 ENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEV 544 (896)
T ss_pred cCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHH
Confidence 9999999999999999999999999994 9999999999999972
Q ss_pred ----ccEEEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEeccccHHHH----HHHHHHHHHc
Q 006824 539 ----IKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFA----GELVNSLIAA 593 (630)
Q Consensus 539 ----v~~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~~~----~~l~~~l~~~ 593 (630)
--+||--..+.|.-.-.|..||+||.| .+|.+.+|++-+|.-.- ..+.+.+...
T Consensus 545 ~~~GGL~VIgTerhesrRID~QLrGRaGRQG-DPGss~f~lSleD~l~~~f~~~~~~~~~~~~ 606 (896)
T PRK13104 545 IAAGGLRIIGSERHESRRIDNQLRGRAGRQG-DPGSSRFYLSLEDNLMRIFASERVASMMRRL 606 (896)
T ss_pred HHcCCCEEEeeccCchHHHHHHhccccccCC-CCCceEEEEEcCcHHHHHhChHHHHHHHHHc
Confidence 237888888889888899999999999 58999999998874332 3344445443
No 86
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.97 E-value=1.1e-29 Score=293.25 Aligned_cols=305 Identities=20% Similarity=0.311 Sum_probs=214.4
Q ss_pred HHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEE
Q 006824 253 CQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAV 332 (630)
Q Consensus 253 ~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~ 332 (630)
.+.+..+.+++.+|++|+||||||.+ +|.+..-... +...++++.-|.|-.|..++..+.+.. +..+...
T Consensus 73 ~~Il~~l~~~~vvii~g~TGSGKTTq--lPq~lle~~~-----~~~~~I~~tQPRRlAA~svA~RvA~el---g~~lG~~ 142 (1283)
T TIGR01967 73 EDIAEAIAENQVVIIAGETGSGKTTQ--LPKICLELGR-----GSHGLIGHTQPRRLAARTVAQRIAEEL---GTPLGEK 142 (1283)
T ss_pred HHHHHHHHhCceEEEeCCCCCCcHHH--HHHHHHHcCC-----CCCceEecCCccHHHHHHHHHHHHHHh---CCCcceE
Confidence 35666677778899999999999974 6766543221 112356667798887777665554433 4444444
Q ss_pred ECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchh-hhhcCCcHHH-HHHHHhhcCCCCcEEEEe
Q 006824 333 YGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEAD-RMFDLGFEPQ-IRSIVGQIRPDRQTLLFS 410 (630)
Q Consensus 333 ~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah-~~~~~~~~~~-v~~i~~~l~~~~q~l~~S 410 (630)
+|.....+. ....+..|+|+|++.|...+.... .++.+++||||||| ++++.+|.-. +..++. .+++.|+|+||
T Consensus 143 VGY~vR~~~--~~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~-~rpdLKlIlmS 218 (1283)
T TIGR01967 143 VGYKVRFHD--QVSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLP-RRPDLKIIITS 218 (1283)
T ss_pred EeeEEcCCc--ccCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHHHh-hCCCCeEEEEe
Confidence 443222111 112357899999999999887654 48999999999999 6888887654 455543 35788999999
Q ss_pred ecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCc-----cccHHHHHHhccCC--CCCCCEEEEccchhhH
Q 006824 411 ATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSD-----AEKLPWLLEKLPGM--IDDGDVLVFASKKTTV 483 (630)
Q Consensus 411 AT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~-----~~k~~~l~~~l~~~--~~~~~iLIF~~s~~~~ 483 (630)
||+.. ..+.+.|...|+ +.+... ...+...+...... ..+...+...+... ...|.+|||+++..++
T Consensus 219 ATld~--~~fa~~F~~apv-I~V~Gr---~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI 292 (1283)
T TIGR01967 219 ATIDP--ERFSRHFNNAPI-IEVSGR---TYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGEREI 292 (1283)
T ss_pred CCcCH--HHHHHHhcCCCE-EEECCC---cccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHH
Confidence 99974 456666555564 333221 22333333322211 12223333333221 1357899999999999
Q ss_pred HHHHHHHHhCC---CcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEEEEeCCCC-----------
Q 006824 484 DEIESQLAQKG---FKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIAR----------- 549 (630)
Q Consensus 484 ~~l~~~L~~~~---~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~----------- 549 (630)
+.+++.|...+ +.+..+||++++.+|.+++..+ +..+|||||+++++|||||+|++||+++.+.
T Consensus 293 ~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~ 370 (1283)
T TIGR01967 293 RDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQ 370 (1283)
T ss_pred HHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCcc
Confidence 99999998764 4588999999999999986543 2468999999999999999999999998542
Q ss_pred -------CHHHHHHHhhhcccCCCCCeEEEEEeccccHH
Q 006824 550 -------DMDMHVHRIGRTGRAGDKDGTAYTLVTQKEAR 581 (630)
Q Consensus 550 -------~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~ 581 (630)
|...|.||.||+||.| +|.||.|++..+..
T Consensus 371 ~L~~~~ISkasa~QRaGRAGR~~--~G~cyRLyte~~~~ 407 (1283)
T TIGR01967 371 RLPIEPISQASANQRKGRCGRVA--PGICIRLYSEEDFN 407 (1283)
T ss_pred ccCCccCCHHHHHHHhhhhCCCC--CceEEEecCHHHHH
Confidence 5679999999999998 79999999987653
No 87
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.97 E-value=3.1e-29 Score=268.85 Aligned_cols=294 Identities=21% Similarity=0.276 Sum_probs=204.1
Q ss_pred CCCcHHHHHHHHHHHc----CCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHH
Q 006824 246 EKPTSIQCQALPIILS----GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (630)
Q Consensus 246 ~~~~~~Q~~~i~~il~----g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 321 (630)
..|+|+|.+++..+.+ .+..++++|||+|||.+++. ++..+ +..+||||||++|+.||.+.+.++
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~-~~~~~----------~~~~Lvlv~~~~L~~Qw~~~~~~~ 103 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAE-AIAEL----------KRSTLVLVPTKELLDQWAEALKKF 103 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHH-HHHHh----------cCCEEEEECcHHHHHHHHHHHHHh
Confidence 4799999999999998 89999999999999987543 33443 333999999999999998777776
Q ss_pred hhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCcHHHHHHHHhhcC
Q 006824 322 AKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIR 401 (630)
Q Consensus 322 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~ 401 (630)
.... .....+||...... . ..|+|+|++.+........+....+.+||+||||++.... ...+...+.
T Consensus 104 ~~~~--~~~g~~~~~~~~~~-----~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~----~~~~~~~~~ 171 (442)
T COG1061 104 LLLN--DEIGIYGGGEKELE-----P-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPS----YRRILELLS 171 (442)
T ss_pred cCCc--cccceecCceeccC-----C-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHH----HHHHHHhhh
Confidence 5321 12333344332211 0 4699999999987521122223479999999999977543 333444443
Q ss_pred CCCcEEEEeecccHHHH---HHHHHHcCCCeEEEEcccccccc----cceEEEEEc--C---------------------
Q 006824 402 PDRQTLLFSATMPRKVE---KLAREILSDPVRVTVGEVGMANE----DITQVVHVI--P--------------------- 451 (630)
Q Consensus 402 ~~~q~l~~SAT~~~~~~---~l~~~~~~~~~~i~~~~~~~~~~----~i~q~~~~~--~--------------------- 451 (630)
.....++||||+++... ..+..+++ |..+.......... +........ .
T Consensus 172 ~~~~~LGLTATp~R~D~~~~~~l~~~~g-~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~ 250 (442)
T COG1061 172 AAYPRLGLTATPEREDGGRIGDLFDLIG-PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRAR 250 (442)
T ss_pred cccceeeeccCceeecCCchhHHHHhcC-CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhh
Confidence 33338999999875431 11222222 33333222111110 000000000 0
Q ss_pred --------------CccccHHHHHHhccCCCCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhh
Q 006824 452 --------------SDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFK 517 (630)
Q Consensus 452 --------------~~~~k~~~l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~ 517 (630)
....+...+...+.......+++|||.+..++..++..|...++ +..+.|.++..+|..+++.|+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr 329 (442)
T COG1061 251 GTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFR 329 (442)
T ss_pred hhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHH
Confidence 01112222222332222356999999999999999999998888 899999999999999999999
Q ss_pred cCCceEEEEcCCcccCCCCCCccEEEEeCCCCCHHHHHHHhhhcccC
Q 006824 518 SGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRA 564 (630)
Q Consensus 518 ~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~QriGR~gR~ 564 (630)
.|.+.+|+++.++.+|+|+|+++++|+..+..|+..|+||+||..|.
T Consensus 330 ~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 330 TGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRP 376 (442)
T ss_pred cCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccC
Confidence 99999999999999999999999999999999999999999999993
No 88
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=1.5e-28 Score=271.33 Aligned_cols=180 Identities=18% Similarity=0.281 Sum_probs=142.6
Q ss_pred ccccCCCHHHHHHHHHHcCcee-ccCCCCCCCCCcccCCCCHHHHHHHH-----HcCCCCC---cHHHHHHHHHHHcCCC
Q 006824 194 ASISGMSEQDVMEYKKSLAIRV-SGFDVPRPVKTFEDCGFSTQLMHAIS-----KQGYEKP---TSIQCQALPIILSGRD 264 (630)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~p~~~~~~~~l~~~l~~~l~-----~~~~~~~---~~~Q~~~i~~il~g~d 264 (630)
+.+..++.++....-..+.... .+..+... -.+.+++...+.+.+. ..||..| +|+|.|++|.++.+++
T Consensus 32 ~~~~~lsd~eL~~kt~~~k~~l~~~~~ld~~--l~eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~g 109 (970)
T PRK12899 32 EKFSSLSDDELRNKTAELKQRYQDGESLDKL--LPEAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKG 109 (970)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHcCCchHHH--HHHHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCC
Confidence 3467777766654433332222 22211111 1245678888887776 5788888 9999999999999999
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHH
Q 006824 265 IIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE 344 (630)
Q Consensus 265 ~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~ 344 (630)
+++.++||+|||++|++|++.+++.. ..++||+||++||.|+++.+..++..+|+++.+++||.+...+...
T Consensus 110 vIAeaqTGeGKTLAf~LP~l~~aL~g--------~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~ 181 (970)
T PRK12899 110 FITEMQTGEGKTLTAVMPLYLNALTG--------KPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEI 181 (970)
T ss_pred eEEEeCCCCChHHHHHHHHHHHHhhc--------CCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHH
Confidence 99999999999999999999887642 2389999999999999999999999999999999999998887655
Q ss_pred HHcCCcEEEeChHHH-HHHHHccccccC-------ceeEEEecchhhhh
Q 006824 345 LKAGCEIVIATPGRL-IDMLKMKALTMS-------RVTYLVLDEADRMF 385 (630)
Q Consensus 345 l~~~~dIiv~Tp~~L-~~~l~~~~~~l~-------~i~~lVvDEah~~~ 385 (630)
+ +|+|+||||++| .++++.+...++ .+.++||||||+|+
T Consensus 182 y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 182 Y--QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSIL 228 (970)
T ss_pred c--CCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhhh
Confidence 4 599999999999 999987755544 56899999999984
No 89
>PRK09694 helicase Cas3; Provisional
Probab=99.97 E-value=6.8e-28 Score=272.53 Aligned_cols=353 Identities=19% Similarity=0.197 Sum_probs=223.7
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhh
Q 006824 245 YEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS 324 (630)
Q Consensus 245 ~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~ 324 (630)
...|+|+|..+........-+|+.||||+|||.++++.+...+ . .+...+++|.+||+++++|++..+.+++..
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~-~-----~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~ 357 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLI-D-----QGLADSIIFALPTQATANAMLSRLEALASK 357 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHH-H-----hCCCCeEEEECcHHHHHHHHHHHHHHHHHH
Confidence 3589999998865544567789999999999998776655433 2 122467999999999999999999876553
Q ss_pred c--CceEEEEECCCChHHHHH--------------------HHHc-------CCcEEEeChHHHHHHHHc-cccccCc--
Q 006824 325 H--GIRVSAVYGGMSKLDQFK--------------------ELKA-------GCEIVIATPGRLIDMLKM-KALTMSR-- 372 (630)
Q Consensus 325 ~--~~~~~~~~gg~~~~~~~~--------------------~l~~-------~~dIiv~Tp~~L~~~l~~-~~~~l~~-- 372 (630)
. ...+.+.+|.......+. .... -++|+|||+..++..+-. ....++.
T Consensus 358 ~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~ 437 (878)
T PRK09694 358 LFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFG 437 (878)
T ss_pred hcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHh
Confidence 2 245666666543211111 1111 179999999888754432 2222333
Q ss_pred --eeEEEecchhhhhcCCcHHHHHHHHhhc-CCCCcEEEEeecccHHHHH-HHHHHcCC-CeE-------EE-Ecccc--
Q 006824 373 --VTYLVLDEADRMFDLGFEPQIRSIVGQI-RPDRQTLLFSATMPRKVEK-LAREILSD-PVR-------VT-VGEVG-- 437 (630)
Q Consensus 373 --i~~lVvDEah~~~~~~~~~~v~~i~~~l-~~~~q~l~~SAT~~~~~~~-l~~~~~~~-~~~-------i~-~~~~~-- 437 (630)
-++|||||+|.+ +......+..++..+ .....+|+||||+|..+.. +...+... +.. +. .....
T Consensus 438 La~svvIiDEVHAy-D~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~ 516 (878)
T PRK09694 438 LGRSVLIVDEVHAY-DAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQ 516 (878)
T ss_pred hccCeEEEechhhC-CHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccce
Confidence 358999999985 332344455555544 2356799999999988654 34433211 100 00 00000
Q ss_pred ---cc------cccceEEEEEcC-CccccHHHHHHhccC-CCCCCCEEEEccchhhHHHHHHHHHhCC---CcEEEEeCC
Q 006824 438 ---MA------NEDITQVVHVIP-SDAEKLPWLLEKLPG-MIDDGDVLVFASKKTTVDEIESQLAQKG---FKAAALHGD 503 (630)
Q Consensus 438 ---~~------~~~i~q~~~~~~-~~~~k~~~l~~~l~~-~~~~~~iLIF~~s~~~~~~l~~~L~~~~---~~~~~ihg~ 503 (630)
.. .......+.... ........+++.+.. ....+++|||||++..++.+++.|++.+ ..+..+||.
T Consensus 517 ~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsr 596 (878)
T PRK09694 517 RFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHAR 596 (878)
T ss_pred eeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCC
Confidence 00 000011111110 000111223333322 2345689999999999999999999764 679999999
Q ss_pred CCHHHH----HHHHHHh-hcCC---ceEEEEcCCcccCCCCCCccEEEEeCCCCCHHHHHHHhhhcccCCCC--C-e---
Q 006824 504 KDQASR----MEILQKF-KSGV---YHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDK--D-G--- 569 (630)
Q Consensus 504 ~~~~~r----~~~~~~F-~~g~---~~VLvaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~QriGR~gR~g~~--~-g--- 569 (630)
+++.+| .++++.| ++|+ ..|||||+++++|+|| +++.||....| ++.++||+||+||.+.+ + |
T Consensus 597 f~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~~~rp~~~~~ 673 (878)
T PRK09694 597 FTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHRKYRPAGFEI 673 (878)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCCCCCCCCCcC
Confidence 999999 4567788 6666 4799999999999999 57999998877 78999999999998842 1 2
Q ss_pred -EEEEEecc-----------ccHHHHHHHHHHHHHcC---CCCCHHHHHHHHh
Q 006824 570 -TAYTLVTQ-----------KEARFAGELVNSLIAAG---QNVSMELMDLAMK 607 (630)
Q Consensus 570 -~~~~l~~~-----------~d~~~~~~l~~~l~~~~---~~vp~~L~~la~~ 607 (630)
.++++... .+...+.+-...|...+ ..+|.....+...
T Consensus 674 p~~~V~~p~~~~~~~~~~VY~~~~~L~rT~~~L~~~~~~~~~~P~~~~~lve~ 726 (878)
T PRK09694 674 PVATVLLPDGEGYGRSGYIYGNTRVLWRTEQLLEEHNAASLFFPDAYREWIES 726 (878)
T ss_pred ceEEEEeccccccCCceeecCchHHHHHHHHHHHhcCCCCcCChHHHHHHHHH
Confidence 33443211 12224444455666654 4577776666554
No 90
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.97 E-value=1.1e-28 Score=256.31 Aligned_cols=292 Identities=17% Similarity=0.222 Sum_probs=236.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHHhhh-------------cCc------eEEEEECCCChHHHHHHHHcC---------
Q 006824 297 EGPIGVICAPTRELAHQIYLETKKFAKS-------------HGI------RVSAVYGGMSKLDQFKELKAG--------- 348 (630)
Q Consensus 297 ~~~~vLil~Ptr~La~Q~~~~~~~~~~~-------------~~~------~~~~~~gg~~~~~~~~~l~~~--------- 348 (630)
.+|+||||+|+|..|.++++.+.+++.. +|+ ....-.....++.++..++.|
T Consensus 36 tRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlG 115 (442)
T PF06862_consen 36 TRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLG 115 (442)
T ss_pred CCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEe
Confidence 4799999999999999999999888765 110 000111123455566666655
Q ss_pred ----------------CcEEEeChHHHHHHHHc------cccccCceeEEEecchhhhhcCCcHHHHHHHHhhcCC----
Q 006824 349 ----------------CEIVIATPGRLIDMLKM------KALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRP---- 402 (630)
Q Consensus 349 ----------------~dIiv~Tp~~L~~~l~~------~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~---- 402 (630)
+|||||||.+|...+.. ...+|++|+++|||.||.|+ |++|.++..++.+++.
T Consensus 116 ik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~-MQNW~Hv~~v~~~lN~~P~~ 194 (442)
T PF06862_consen 116 IKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLL-MQNWEHVLHVFEHLNLQPKK 194 (442)
T ss_pred EEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHH-HhhHHHHHHHHHHhccCCCC
Confidence 89999999999999974 45679999999999999976 7789999999998863
Q ss_pred --------------------CCcEEEEeecccHHHHHHHHHHcCCCe---EEEE-----cccccccccceEEEEEcCC--
Q 006824 403 --------------------DRQTLLFSATMPRKVEKLAREILSDPV---RVTV-----GEVGMANEDITQVVHVIPS-- 452 (630)
Q Consensus 403 --------------------~~q~l~~SAT~~~~~~~l~~~~~~~~~---~i~~-----~~~~~~~~~i~q~~~~~~~-- 452 (630)
-||+|++|+...+++..+.+..|.|.. .+.. +........+.|.+..++.
T Consensus 195 ~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s 274 (442)
T PF06862_consen 195 SHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSS 274 (442)
T ss_pred CCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCC
Confidence 279999999999999999999888742 2222 2223455678888887664
Q ss_pred ----ccccHHHHHHhcc-CCC---CCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEE
Q 006824 453 ----DAEKLPWLLEKLP-GMI---DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVL 524 (630)
Q Consensus 453 ----~~~k~~~l~~~l~-~~~---~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VL 524 (630)
.+.++.++...+. ... ..+++|||++|+-+..+|+++|++.++.++.||+++++.+..+++..|..|+.+||
T Consensus 275 ~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iL 354 (442)
T PF06862_consen 275 PADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPIL 354 (442)
T ss_pred cchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEE
Confidence 3456666665332 222 35689999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCcc--cCCCCCCccEEEEeCCCCCHHHHHHHhhhcccCCC-----CCeEEEEEeccccHHHHHHHHHH
Q 006824 525 IATDVAA--RGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGD-----KDGTAYTLVTQKEARFAGELVNS 589 (630)
Q Consensus 525 vaT~~~~--~Gldi~~v~~VI~~~~p~~~~~y~QriGR~gR~g~-----~~g~~~~l~~~~d~~~~~~l~~~ 589 (630)
|+|++++ +.+.|.++++||+|++|.+|..|...++..+.... ..+.|.++++..|...+++||..
T Consensus 355 L~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIVGt 426 (442)
T PF06862_consen 355 LYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIVGT 426 (442)
T ss_pred EEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHhCH
Confidence 9999999 99999999999999999999999998876655431 35799999999999999999864
No 91
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=2.4e-28 Score=270.34 Aligned_cols=317 Identities=19% Similarity=0.204 Sum_probs=235.4
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcC
Q 006824 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (630)
Q Consensus 247 ~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~ 326 (630)
.|++.|.-+.-.+..| -|..++||+|||+++++|++...+. |..+-|++||..||.|.++.+..++..+|
T Consensus 81 ~~~dvQlig~l~L~~G--~Iaem~TGeGKTLva~lpa~l~aL~--------G~~V~IvTpn~yLA~rd~e~~~~l~~~LG 150 (830)
T PRK12904 81 RHFDVQLIGGMVLHEG--KIAEMKTGEGKTLVATLPAYLNALT--------GKGVHVVTVNDYLAKRDAEWMGPLYEFLG 150 (830)
T ss_pred CCCccHHHhhHHhcCC--chhhhhcCCCcHHHHHHHHHHHHHc--------CCCEEEEecCHHHHHHHHHHHHHHHhhcC
Confidence 5677777776666565 4999999999999999999744432 33477999999999999999999999999
Q ss_pred ceEEEEECCCChHHHHHHHHcCCcEEEeChHHH-HHHHHccc------cccCceeEEEecchhhhhcC------------
Q 006824 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRL-IDMLKMKA------LTMSRVTYLVLDEADRMFDL------------ 387 (630)
Q Consensus 327 ~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L-~~~l~~~~------~~l~~i~~lVvDEah~~~~~------------ 387 (630)
+++.+++|+.+..++...+ .++|+++||+.| .++++.+. ..++.+.++||||||+|+-.
T Consensus 151 lsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg~~ 228 (830)
T PRK12904 151 LSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPA 228 (830)
T ss_pred CeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeECCC
Confidence 9999999998887665554 499999999999 88887553 24678999999999997310
Q ss_pred ----CcHHHHHHHHhhcCC-------------------------------------------------------------
Q 006824 388 ----GFEPQIRSIVGQIRP------------------------------------------------------------- 402 (630)
Q Consensus 388 ----~~~~~v~~i~~~l~~------------------------------------------------------------- 402 (630)
.....+..+...+..
T Consensus 229 ~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~dYi 308 (830)
T PRK12904 229 EDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVDYI 308 (830)
T ss_pred CcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEE
Confidence 011122222222211
Q ss_pred --------------------------------------------------------CCcEEEEeecccHHHHHHHHHHcC
Q 006824 403 --------------------------------------------------------DRQTLLFSATMPRKVEKLAREILS 426 (630)
Q Consensus 403 --------------------------------------------------------~~q~l~~SAT~~~~~~~l~~~~~~ 426 (630)
..++.+||+|...+...+...|.-
T Consensus 309 V~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l 388 (830)
T PRK12904 309 VKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYNL 388 (830)
T ss_pred EECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHhCC
Confidence 024455666665444444433322
Q ss_pred CCeEEEEcccccccccceEEEEEcCCccccHHHHHHhccCC-CCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCC
Q 006824 427 DPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGM-IDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKD 505 (630)
Q Consensus 427 ~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~-~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~ 505 (630)
+.+.+ +.. .........-.++.....|+..+...+... ....++||||+|+..++.++..|.+.|+++..+|+.
T Consensus 389 ~vv~I-Ptn--kp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak-- 463 (830)
T PRK12904 389 DVVVI-PTN--RPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK-- 463 (830)
T ss_pred CEEEc-CCC--CCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--
Confidence 22111 111 111111111122334557888888888653 245689999999999999999999999999999995
Q ss_pred HHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCc--------------------------------------cEEEEeCC
Q 006824 506 QASRMEILQKFKSGVYHVLIATDVAARGLDIKSI--------------------------------------KSVVNFDI 547 (630)
Q Consensus 506 ~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v--------------------------------------~~VI~~~~ 547 (630)
+.+|+..+..|+.+...|+|||++++||+||+-- -+||....
T Consensus 464 q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTer 543 (830)
T PRK12904 464 NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTER 543 (830)
T ss_pred hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEeccc
Confidence 8899999999999999999999999999999743 37888888
Q ss_pred CCCHHHHHHHhhhcccCCCCCeEEEEEeccccHH
Q 006824 548 ARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEAR 581 (630)
Q Consensus 548 p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~ 581 (630)
|.|.-.-.|..||+||.| .+|.+.+|++-+|.-
T Consensus 544 hesrRid~QlrGRagRQG-dpGss~f~lSleD~l 576 (830)
T PRK12904 544 HESRRIDNQLRGRSGRQG-DPGSSRFYLSLEDDL 576 (830)
T ss_pred CchHHHHHHhhcccccCC-CCCceeEEEEcCcHH
Confidence 999999999999999999 589999999988743
No 92
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=2.1e-28 Score=263.11 Aligned_cols=311 Identities=20% Similarity=0.218 Sum_probs=235.1
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhc
Q 006824 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (630)
Q Consensus 246 ~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~ 325 (630)
..|.++|++||-++..|..+++.|+|.+|||+++-.++... ..++.+++|..|-++|-+|-++.++.-+...
T Consensus 296 FelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAiala--------q~h~TR~iYTSPIKALSNQKfRDFk~tF~Dv 367 (1248)
T KOG0947|consen 296 FELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALA--------QKHMTRTIYTSPIKALSNQKFRDFKETFGDV 367 (1248)
T ss_pred CCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHH--------HhhccceEecchhhhhccchHHHHHHhcccc
Confidence 36889999999999999999999999999998765543222 1236779999999999999998888776533
Q ss_pred CceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCcHHHHHHHHhhcCCCCc
Q 006824 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 405 (630)
Q Consensus 326 ~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q 405 (630)
| .++|...... .+.++|+|.+.|..++.++..-++++++||+||+|.+-+...+-.++.++-.+++..+
T Consensus 368 g----LlTGDvqinP-------eAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV~ 436 (1248)
T KOG0947|consen 368 G----LLTGDVQINP-------EASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHVN 436 (1248)
T ss_pred c----eeecceeeCC-------CcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeeccccce
Confidence 3 6777765543 3789999999999999999988999999999999999888888888889999999999
Q ss_pred EEEEeecccHHHHHHHHHHcCCC-eEEEEcccccccccceEEEEE-------------------------c-------C-
Q 006824 406 TLLFSATMPRKVEKLAREILSDP-VRVTVGEVGMANEDITQVVHV-------------------------I-------P- 451 (630)
Q Consensus 406 ~l~~SAT~~~~~~~l~~~~~~~~-~~i~~~~~~~~~~~i~q~~~~-------------------------~-------~- 451 (630)
+|++|||.|+.. +++.|+.+-. ..+.+...........+.+.. . .
T Consensus 437 ~IlLSATVPN~~-EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~ 515 (1248)
T KOG0947|consen 437 FILLSATVPNTL-EFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDV 515 (1248)
T ss_pred EEEEeccCCChH-HHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhccccccccc
Confidence 999999999774 4788775421 111111110000011100000 0 0
Q ss_pred -------------------------------Cccc---cHHHHHHhccCCCCCCCEEEEccchhhHHHHHHHHHhC----
Q 006824 452 -------------------------------SDAE---KLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK---- 493 (630)
Q Consensus 452 -------------------------------~~~~---k~~~l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~---- 493 (630)
.... .+..++..|... .--|++|||-++..|+..+.+|...
T Consensus 516 ~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~-~lLP~VvFvFSkkrCde~a~~L~~~nL~~ 594 (1248)
T KOG0947|consen 516 EKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKK-NLLPVVVFVFSKKRCDEYADYLTNLNLTD 594 (1248)
T ss_pred ccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhc-ccCceEEEEEccccHHHHHHHHhccCccc
Confidence 0000 123334444332 2348999999999999999998752
Q ss_pred -----------------------------------CCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCC
Q 006824 494 -----------------------------------GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKS 538 (630)
Q Consensus 494 -----------------------------------~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~ 538 (630)
.-.++++|||+-+--++-+.-.|..|-++||+||..++.|+|.|.
T Consensus 595 ~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPA 674 (1248)
T KOG0947|consen 595 SKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPA 674 (1248)
T ss_pred chhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCc
Confidence 124889999999999999999999999999999999999999997
Q ss_pred ccEEEEeCCCC---------CHHHHHHHhhhcccCC-CCCeEEEEEeccc
Q 006824 539 IKSVVNFDIAR---------DMDMHVHRIGRTGRAG-DKDGTAYTLVTQK 578 (630)
Q Consensus 539 v~~VI~~~~p~---------~~~~y~QriGR~gR~g-~~~g~~~~l~~~~ 578 (630)
++||+-.+.. +|-.|.||.||+||.| +.+|+++++....
T Consensus 675 -RtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 675 -RTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred -eeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 5555544332 5889999999999999 8889999988754
No 93
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.96 E-value=1.2e-27 Score=272.96 Aligned_cols=320 Identities=18% Similarity=0.273 Sum_probs=216.4
Q ss_pred CCCcHHHHHHHHHHH----cCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHH
Q 006824 246 EKPTSIQCQALPIIL----SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (630)
Q Consensus 246 ~~~~~~Q~~~i~~il----~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 321 (630)
.+|+|+|.+++.+++ +|.++|++..||.|||++.+ .++.++...+ +....+|||||. .++.||..++.+|
T Consensus 168 ~~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaI-alL~~L~~~~----~~~gp~LIVvP~-SlL~nW~~Ei~kw 241 (1033)
T PLN03142 168 GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTI-SLLGYLHEYR----GITGPHMVVAPK-STLGNWMNEIRRF 241 (1033)
T ss_pred cchHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHH-HHHHHHHHhc----CCCCCEEEEeCh-HHHHHHHHHHHHH
Confidence 368999999999986 67889999999999998743 3444443221 112347999996 6677899999999
Q ss_pred hhhcCceEEEEECCCChHHHHHH---HHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCcHHHHHHHHh
Q 006824 322 AKSHGIRVSAVYGGMSKLDQFKE---LKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVG 398 (630)
Q Consensus 322 ~~~~~~~~~~~~gg~~~~~~~~~---l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~ 398 (630)
+. .+++..++|.......... .....+|+|+|++.+..... .+.-..+.+|||||||++.+. ...+...+.
T Consensus 242 ~p--~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~--~L~k~~W~~VIvDEAHrIKN~--~Sklskalr 315 (1033)
T PLN03142 242 CP--VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKT--ALKRFSWRYIIIDEAHRIKNE--NSLLSKTMR 315 (1033)
T ss_pred CC--CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHH--HhccCCCCEEEEcCccccCCH--HHHHHHHHH
Confidence 86 5666767665433222211 12357999999998875432 222346889999999998754 334445555
Q ss_pred hcCCCCcEEEEeecccHH-HHHHH---H---------------H----------------------HcCC----------
Q 006824 399 QIRPDRQTLLFSATMPRK-VEKLA---R---------------E----------------------ILSD---------- 427 (630)
Q Consensus 399 ~l~~~~q~l~~SAT~~~~-~~~l~---~---------------~----------------------~~~~---------- 427 (630)
.++. ...+++|+||-.+ +.++. . + ++..
T Consensus 316 ~L~a-~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~L 394 (1033)
T PLN03142 316 LFST-NYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGL 394 (1033)
T ss_pred Hhhc-CcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhC
Confidence 5543 3458899997421 11111 0 0 0000
Q ss_pred C-e---EEEEcccc--c-------------c-----cc---cc-eE---E------E------------EEcCCccccHH
Q 006824 428 P-V---RVTVGEVG--M-------------A-----NE---DI-TQ---V------V------------HVIPSDAEKLP 458 (630)
Q Consensus 428 ~-~---~i~~~~~~--~-------------~-----~~---~i-~q---~------~------------~~~~~~~~k~~ 458 (630)
| . .+.+.-.. . . .. .+ .+ . + ..+...+.|+.
T Consensus 395 PpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~ 474 (1033)
T PLN03142 395 PPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMV 474 (1033)
T ss_pred CCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHH
Confidence 0 0 00000000 0 0 00 00 00 0 0 00001134555
Q ss_pred HHHHhccCCC-CCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcC---CceEEEEcCCcccCC
Q 006824 459 WLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSG---VYHVLIATDVAARGL 534 (630)
Q Consensus 459 ~l~~~l~~~~-~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g---~~~VLvaT~~~~~Gl 534 (630)
.|..+|.... .+.++|||+.....++.|..+|...++.++.|||+++..+|..++..|++. ...+|++|.+++.||
T Consensus 475 lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGI 554 (1033)
T PLN03142 475 LLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGI 554 (1033)
T ss_pred HHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCC
Confidence 5555554432 346999999999999999999999999999999999999999999999763 346789999999999
Q ss_pred CCCCccEEEEeCCCCCHHHHHHHhhhcccCCCCC-eEEEEEeccc
Q 006824 535 DIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKD-GTAYTLVTQK 578 (630)
Q Consensus 535 di~~v~~VI~~~~p~~~~~y~QriGR~gR~g~~~-g~~~~l~~~~ 578 (630)
|+..+++||+||+||||..+.|++||++|.|++. ..+|.|++..
T Consensus 555 NLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~g 599 (1033)
T PLN03142 555 NLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEY 599 (1033)
T ss_pred chhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCC
Confidence 9999999999999999999999999999999543 4567777764
No 94
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=5.4e-28 Score=265.74 Aligned_cols=356 Identities=20% Similarity=0.228 Sum_probs=256.5
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcC-CCEEEEeCCCChHHHHHHHHHHHHHhcCCcccc---cCCCeEEEEcc
Q 006824 231 GFSTQLMHAISKQGYEKPTSIQCQALPIILSG-RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQK---EEGPIGVICAP 306 (630)
Q Consensus 231 ~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g-~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~---~~~~~vLil~P 306 (630)
.+|.+-..++. |..++.++|....+..+.+ .++++|||||+|||..+++-+|..+-....... -..-++++++|
T Consensus 295 elP~Wnq~aF~--g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAP 372 (1674)
T KOG0951|consen 295 ELPKWNQPAFF--GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAP 372 (1674)
T ss_pred CCcchhhhhcc--cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEee
Confidence 45555555543 5567999999999998877 699999999999999999999988855432111 12347999999
Q ss_pred cHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHcc--ccccCceeEEEecchhhh
Q 006824 307 TRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK--ALTMSRVTYLVLDEADRM 384 (630)
Q Consensus 307 tr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~--~~~l~~i~~lVvDEah~~ 384 (630)
..+||+.|+..+.+....+|++|.-.+|......+ -..+..||||||+..--+-++. ....+-+.++|+||.|.+
T Consensus 373 mKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~---qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLL 449 (1674)
T KOG0951|consen 373 MKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKE---QIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLL 449 (1674)
T ss_pred HHHHHHHHHHHHHhhccccCcEEEEecccccchhh---hhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhc
Confidence 99999999999999999999999999998764432 1235899999999984433331 122445789999999986
Q ss_pred hcCCcHHHHHHHHhhcC-------CCCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCcc--c
Q 006824 385 FDLGFEPQIRSIVGQIR-------PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDA--E 455 (630)
Q Consensus 385 ~~~~~~~~v~~i~~~l~-------~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~--~ 455 (630)
-+ ..++.+.+|..... ...+++++|||+|+- .+.+.-+..++..+...........+.|.+.-+.... .
T Consensus 450 hD-dRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy-~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~ 527 (1674)
T KOG0951|consen 450 HD-DRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNY-EDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLK 527 (1674)
T ss_pred cc-ccchHHHHHHHHHHHHhhhcccCceeeeecccCCch-hhhHHHhccCcccccccCcccCcCCccceEeccccCCchH
Confidence 44 35777777665442 367899999999965 4445444455544445555566667777776654321 1
Q ss_pred cHH----HHHHhccCCCCCCCEEEEccchhhHHHHHHHHHh-------------------------------------CC
Q 006824 456 KLP----WLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQ-------------------------------------KG 494 (630)
Q Consensus 456 k~~----~l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~-------------------------------------~~ 494 (630)
+++ ..++.+.+....+++|||+.++++.-+.++.++. ..
T Consensus 528 ~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLp 607 (1674)
T KOG0951|consen 528 RFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLP 607 (1674)
T ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhh
Confidence 222 2233333444558999999999988877777662 14
Q ss_pred CcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEEE----EeCC------CCCHHHHHHHhhhcccC
Q 006824 495 FKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVV----NFDI------ARDMDMHVHRIGRTGRA 564 (630)
Q Consensus 495 ~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI----~~~~------p~~~~~y~QriGR~gR~ 564 (630)
+.++.+|.||+..+|......|..|.++|||+|..+++|+|+|+-..+| .|++ +-+|.+.+||+||+||.
T Consensus 608 ygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp 687 (1674)
T KOG0951|consen 608 YGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRP 687 (1674)
T ss_pred ccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCC
Confidence 5699999999999999999999999999999999999999999754444 2554 34789999999999998
Q ss_pred C-CCCeEEEEEeccccHHHHHHHHHHHHHcCCCCCH
Q 006824 565 G-DKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSM 599 (630)
Q Consensus 565 g-~~~g~~~~l~~~~d~~~~~~l~~~l~~~~~~vp~ 599 (630)
+ +..|..++.....+.. ..+...+|.+|.
T Consensus 688 ~~D~~gegiiit~~se~q------yyls~mn~qLpi 717 (1674)
T KOG0951|consen 688 QYDTCGEGIIITDHSELQ------YYLSLMNQQLPI 717 (1674)
T ss_pred ccCcCCceeeccCchHhh------hhHHhhhhcCCC
Confidence 8 4445555544444333 334444555553
No 95
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.96 E-value=1e-26 Score=260.17 Aligned_cols=360 Identities=21% Similarity=0.236 Sum_probs=263.0
Q ss_pred cccCCCHHHHHHHHHHcCceecc--C---CC--CCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHH----cC-
Q 006824 195 SISGMSEQDVMEYKKSLAIRVSG--F---DV--PRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIIL----SG- 262 (630)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~--~---~~--p~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il----~g- 262 (630)
.+..+....|..-|.+..-.+.. . .+ -+....=-.+..+...+..+...---.-||-|..||..+. ++
T Consensus 535 ~L~kLG~~~W~k~K~K~~~~v~diA~eLi~lyA~R~~~~G~af~~d~~~q~~F~~~FPyeET~DQl~AI~eVk~DM~~~k 614 (1139)
T COG1197 535 KLHKLGGGAWKKAKAKARKKVRDIAAELIKLYAKRQAKKGFAFPPDTEWQEEFEASFPYEETPDQLKAIEEVKRDMESGK 614 (1139)
T ss_pred cccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCChHHHHHHHhcCCCcCCHHHHHHHHHHHHHhccCC
Confidence 46677777887776654222210 0 00 0000000012334445555554433367999999999876 44
Q ss_pred -CCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHH
Q 006824 263 -RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ 341 (630)
Q Consensus 263 -~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~ 341 (630)
-|-|+||..|-|||-+++-+++..++. |+.|.|||||.-||+|.++.+++-+..+.+++..+..-.+..++
T Consensus 615 pMDRLiCGDVGFGKTEVAmRAAFkAV~~--------GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~ 686 (1139)
T COG1197 615 PMDRLICGDVGFGKTEVAMRAAFKAVMD--------GKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQ 686 (1139)
T ss_pred cchheeecCcCCcHHHHHHHHHHHHhcC--------CCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHH
Confidence 378999999999999988888888754 78899999999999999999999999999999888776666655
Q ss_pred HH---HHHcC-CcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCcHHHHHHHHhhcCCCCcEEEEeecccHHH
Q 006824 342 FK---ELKAG-CEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKV 417 (630)
Q Consensus 342 ~~---~l~~~-~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q~l~~SAT~~~~~ 417 (630)
.. .+..| .||||+|.- |-.....+++++++||||=|+ |+-.-+.-++.++.+.-++-+||||-|..
T Consensus 687 ~~il~~la~G~vDIvIGTHr-----LL~kdv~FkdLGLlIIDEEqR-----FGVk~KEkLK~Lr~~VDvLTLSATPIPRT 756 (1139)
T COG1197 687 KEILKGLAEGKVDIVIGTHR-----LLSKDVKFKDLGLLIIDEEQR-----FGVKHKEKLKELRANVDVLTLSATPIPRT 756 (1139)
T ss_pred HHHHHHHhcCCccEEEechH-----hhCCCcEEecCCeEEEechhh-----cCccHHHHHHHHhccCcEEEeeCCCCcch
Confidence 43 34444 799999963 223455688999999999999 44455666677788889999999987776
Q ss_pred HHHHHHHcCCCeEEEEcccccccccceEEEEEcCCccccHHHHHHhccCCCCCCCEEEEccchhhHHHHHHHHHhC--CC
Q 006824 418 EKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK--GF 495 (630)
Q Consensus 418 ~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~--~~ 495 (630)
-.++..-+++--.+.. .+.....|...+.-.+ +.--... ++++..++|++-..+|.......++..|+.. ..
T Consensus 757 L~Msm~GiRdlSvI~T--PP~~R~pV~T~V~~~d-~~~ireA---I~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEa 830 (1139)
T COG1197 757 LNMSLSGIRDLSVIAT--PPEDRLPVKTFVSEYD-DLLIREA---ILRELLRGGQVFYVHNRVESIEKKAERLRELVPEA 830 (1139)
T ss_pred HHHHHhcchhhhhccC--CCCCCcceEEEEecCC-hHHHHHH---HHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCce
Confidence 6666555554333322 1222223333332221 1111222 2334456899999999999999999999986 56
Q ss_pred cEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEEEEeCCCC-CHHHHHHHhhhcccCCCCCeEEEEE
Q 006824 496 KAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIAR-DMDMHVHRIGRTGRAGDKDGTAYTL 574 (630)
Q Consensus 496 ~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~-~~~~y~QriGR~gR~g~~~g~~~~l 574 (630)
.+++.||.|+..+-++++..|.+|+++|||||.+.+.|||||+++++|+-+... ..++..|.-||+||.. +.+.||.+
T Consensus 831 rI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~-~~AYAYfl 909 (1139)
T COG1197 831 RIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSN-KQAYAYFL 909 (1139)
T ss_pred EEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCcc-ceEEEEEe
Confidence 799999999999999999999999999999999999999999999999866543 5788899999999988 68999999
Q ss_pred ecccc
Q 006824 575 VTQKE 579 (630)
Q Consensus 575 ~~~~d 579 (630)
+.+..
T Consensus 910 ~p~~k 914 (1139)
T COG1197 910 YPPQK 914 (1139)
T ss_pred ecCcc
Confidence 98644
No 96
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=2.5e-27 Score=261.23 Aligned_cols=317 Identities=20% Similarity=0.241 Sum_probs=225.9
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcC
Q 006824 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (630)
Q Consensus 247 ~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~ 326 (630)
.|++.|.-+.-.+..|+ |..+.||+|||+++.+|++...+. |..|-|++||.-||.|-++.+..++..+|
T Consensus 80 ~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~--------G~~v~vvT~neyLA~Rd~e~~~~~~~~LG 149 (796)
T PRK12906 80 RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALT--------GKGVHVVTVNEYLSSRDATEMGELYRWLG 149 (796)
T ss_pred CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHc--------CCCeEEEeccHHHHHhhHHHHHHHHHhcC
Confidence 57788887776666665 999999999999999998887754 66699999999999999999999999999
Q ss_pred ceEEEEECCCChHHHHHHHHcCCcEEEeChHHHH-HHHHcc------ccccCceeEEEecchhhhhc-C-----------
Q 006824 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLI-DMLKMK------ALTMSRVTYLVLDEADRMFD-L----------- 387 (630)
Q Consensus 327 ~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~-~~l~~~------~~~l~~i~~lVvDEah~~~~-~----------- 387 (630)
+++.++.++.+..+... .. .|||+.+|...|- ++|+.+ ....+.+.+.||||+|.|+- .
T Consensus 150 l~vg~i~~~~~~~~r~~-~y-~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg~~ 227 (796)
T PRK12906 150 LTVGLNLNSMSPDEKRA-AY-NCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQA 227 (796)
T ss_pred CeEEEeCCCCCHHHHHH-Hh-cCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCCCC
Confidence 99999988766654432 22 5899999987764 333321 22346788999999998631 0
Q ss_pred -C---cHHHHHHHHhhcCC-------------------C-----------------------------------------
Q 006824 388 -G---FEPQIRSIVGQIRP-------------------D----------------------------------------- 403 (630)
Q Consensus 388 -~---~~~~v~~i~~~l~~-------------------~----------------------------------------- 403 (630)
+ ....+..+...+.. .
T Consensus 228 ~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A 307 (796)
T PRK12906 228 EKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALRA 307 (796)
T ss_pred CcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHHHH
Confidence 0 11111111111100 0
Q ss_pred --------------------------------------------------------------------CcEEEEeecccH
Q 006824 404 --------------------------------------------------------------------RQTLLFSATMPR 415 (630)
Q Consensus 404 --------------------------------------------------------------------~q~l~~SAT~~~ 415 (630)
.++.+||+|...
T Consensus 308 ~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~~ 387 (796)
T PRK12906 308 NYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAKT 387 (796)
T ss_pred HHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCCHH
Confidence 134444555443
Q ss_pred HHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCccccHHHHHHhccCC-CCCCCEEEEccchhhHHHHHHHHHhCC
Q 006824 416 KVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGM-IDDGDVLVFASKKTTVDEIESQLAQKG 494 (630)
Q Consensus 416 ~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~-~~~~~iLIF~~s~~~~~~l~~~L~~~~ 494 (630)
+-..+...|.- ++...+... ........-.++.....|+..++..+... ....++||||+|+..++.++..|.+.|
T Consensus 388 e~~Ef~~iY~l-~vv~IPtnk--p~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~g 464 (796)
T PRK12906 388 EEEEFREIYNM-EVITIPTNR--PVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAG 464 (796)
T ss_pred HHHHHHHHhCC-CEEEcCCCC--CeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCC
Confidence 33333222222 111111110 00011111122334456888888877543 245699999999999999999999999
Q ss_pred CcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCC---Ccc-----EEEEeCCCCCHHHHHHHhhhcccCCC
Q 006824 495 FKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIK---SIK-----SVVNFDIARDMDMHVHRIGRTGRAGD 566 (630)
Q Consensus 495 ~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~---~v~-----~VI~~~~p~~~~~y~QriGR~gR~g~ 566 (630)
+++..+|+.+.+.++..+...++.|. |+|||++++||.||+ +|. +||+++.|.|...|.|++||+||.|
T Consensus 465 i~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG- 541 (796)
T PRK12906 465 IPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQG- 541 (796)
T ss_pred CCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCC-
Confidence 99999999988777776666666665 999999999999995 888 9999999999999999999999999
Q ss_pred CCeEEEEEeccccHH
Q 006824 567 KDGTAYTLVTQKEAR 581 (630)
Q Consensus 567 ~~g~~~~l~~~~d~~ 581 (630)
.+|.+.+|++.+|.-
T Consensus 542 ~~G~s~~~~sleD~l 556 (796)
T PRK12906 542 DPGSSRFYLSLEDDL 556 (796)
T ss_pred CCcceEEEEeccchH
Confidence 689999999998743
No 97
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.96 E-value=2.2e-27 Score=250.62 Aligned_cols=317 Identities=20% Similarity=0.328 Sum_probs=225.8
Q ss_pred CCCcHHHHHHHHHHH----cCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHH
Q 006824 246 EKPTSIQCQALPIIL----SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (630)
Q Consensus 246 ~~~~~~Q~~~i~~il----~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 321 (630)
..++++|.+++.|+. +|-++|+...||.|||++ .+.++.++.... ...|| .||+||...|. .|.+++.+|
T Consensus 166 g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQ-tIs~l~yl~~~~---~~~GP-fLVi~P~StL~-NW~~Ef~rf 239 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQ-TISLLGYLKGRK---GIPGP-FLVIAPKSTLD-NWMNEFKRF 239 (971)
T ss_pred CccchhhhccHHHHHHHHhcCcccEeehhcccchHHH-HHHHHHHHHHhc---CCCCC-eEEEeeHhhHH-HHHHHHHHh
Confidence 468999999999976 677899999999999987 445555553321 22466 59999988887 699999999
Q ss_pred hhhcCceEEEEECCCChHHHH-HHHH--cCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCcHHHHHHHHh
Q 006824 322 AKSHGIRVSAVYGGMSKLDQF-KELK--AGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVG 398 (630)
Q Consensus 322 ~~~~~~~~~~~~gg~~~~~~~-~~l~--~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~ 398 (630)
++ ++++++++|........ +.+. ...+|+|+|++..+.- +..+.--.|.|+|||||||+-+.. ..+..++.
T Consensus 240 ~P--~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~~W~ylvIDEaHRiKN~~--s~L~~~lr 313 (971)
T KOG0385|consen 240 TP--SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKFNWRYLVIDEAHRIKNEK--SKLSKILR 313 (971)
T ss_pred CC--CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh--HHHHhcCCceEEEechhhhhcchh--hHHHHHHH
Confidence 98 78888888875433322 2222 3589999999987653 223333468999999999987653 34445566
Q ss_pred hcCCCCcEEEEeeccc-HHHHHH---------------------------------------------------------
Q 006824 399 QIRPDRQTLLFSATMP-RKVEKL--------------------------------------------------------- 420 (630)
Q Consensus 399 ~l~~~~q~l~~SAT~~-~~~~~l--------------------------------------------------------- 420 (630)
.+.... -+++|+|+- +++.+|
T Consensus 314 ~f~~~n-rLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sL 392 (971)
T KOG0385|consen 314 EFKTDN-RLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSL 392 (971)
T ss_pred Hhcccc-eeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcC
Confidence 665433 366677752 111111
Q ss_pred ------------------------------------------------HHHHcCCCeEEEEcccccccccceEEEEEcCC
Q 006824 421 ------------------------------------------------AREILSDPVRVTVGEVGMANEDITQVVHVIPS 452 (630)
Q Consensus 421 ------------------------------------------------~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~ 452 (630)
+++.|..|..+.....+... .....+-.
T Consensus 393 ppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~py----ttdehLv~ 468 (971)
T KOG0385|consen 393 PPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPY----TTDEHLVT 468 (971)
T ss_pred CCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCC----CcchHHHh
Confidence 11111111111110000000 00000012
Q ss_pred ccccHHHHHHhccCCC-CCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcC---CceEEEEcC
Q 006824 453 DAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSG---VYHVLIATD 528 (630)
Q Consensus 453 ~~~k~~~l~~~l~~~~-~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g---~~~VLvaT~ 528 (630)
.+.|+..|..+|..+. .+.+||||.+.....+.+.+|+--.++.++.|.|.++.++|..+++.|... +.-+|++|.
T Consensus 469 nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTR 548 (971)
T KOG0385|consen 469 NSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTR 548 (971)
T ss_pred cCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecc
Confidence 3456666666666553 356899999999999999999999999999999999999999999999864 355799999
Q ss_pred CcccCCCCCCccEEEEeCCCCCHHHHHHHhhhcccCCC-CCeEEEEEecccc
Q 006824 529 VAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGD-KDGTAYTLVTQKE 579 (630)
Q Consensus 529 ~~~~Gldi~~v~~VI~~~~p~~~~~y~QriGR~gR~g~-~~g~~~~l~~~~d 579 (630)
+++.|||+..+++||+||..|||..-+|...||+|.|+ ++..+|.|++.+-
T Consensus 549 AGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitent 600 (971)
T KOG0385|consen 549 AGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENT 600 (971)
T ss_pred ccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccch
Confidence 99999999999999999999999999999999999994 4566778888764
No 98
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.96 E-value=8.7e-27 Score=252.87 Aligned_cols=286 Identities=19% Similarity=0.283 Sum_probs=194.2
Q ss_pred EEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHH---H
Q 006824 266 IGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ---F 342 (630)
Q Consensus 266 l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~ 342 (630)
|+.|+||||||.+|+.. +.+++.. +.++|||+|+++|+.|+++.+++.+ +..+..++++.+..+. +
T Consensus 1 LL~g~TGsGKT~v~l~~-i~~~l~~-------g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~~~ 69 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQA-IEKVLAL-------GKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQAW 69 (505)
T ss_pred CccCCCCCCHHHHHHHH-HHHHHHc-------CCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHHHH
Confidence 47899999999998654 4444332 6679999999999999999888764 6778888888765543 4
Q ss_pred HHHHc-CCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCC---c---HHHHHHHHhhcCCCCcEEEEeecccH
Q 006824 343 KELKA-GCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG---F---EPQIRSIVGQIRPDRQTLLFSATMPR 415 (630)
Q Consensus 343 ~~l~~-~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~---~---~~~v~~i~~~l~~~~q~l~~SAT~~~ 415 (630)
..+.. .++|||+|+..+. ..+.++++|||||+|....++ . ...+..+. ....+.++|++|||++.
T Consensus 70 ~~~~~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~r-a~~~~~~vil~SATPsl 141 (505)
T TIGR00595 70 RKVKNGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYR-AKKFNCPVVLGSATPSL 141 (505)
T ss_pred HHHHcCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHH-HHhcCCCEEEEeCCCCH
Confidence 44444 4799999998763 357789999999999865332 1 11122222 33357899999999876
Q ss_pred HHHHHHHHHcCCCeEEEEccc--ccccccceEEEEEcCCcc---ccHHHHHHhccCCCC-CCCEEEEccchhh-------
Q 006824 416 KVEKLAREILSDPVRVTVGEV--GMANEDITQVVHVIPSDA---EKLPWLLEKLPGMID-DGDVLVFASKKTT------- 482 (630)
Q Consensus 416 ~~~~l~~~~~~~~~~i~~~~~--~~~~~~i~q~~~~~~~~~---~k~~~l~~~l~~~~~-~~~iLIF~~s~~~------- 482 (630)
+....+. -+....+..... +.....+ +.+ -+.... .-...+++.+..... ++++|||+|++..
T Consensus 142 es~~~~~--~g~~~~~~l~~r~~~~~~p~v-~vi-d~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~ 217 (505)
T TIGR00595 142 ESYHNAK--QKAYRLLVLTRRVSGRKPPEV-KLI-DMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCR 217 (505)
T ss_pred HHHHHHh--cCCeEEeechhhhcCCCCCeE-EEE-ecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhh
Confidence 5433332 122111111111 1111111 111 111110 011234555544433 4589999877653
Q ss_pred -----------------------------------------------------HHHHHHHHHhC--CCcEEEEeCCCCHH
Q 006824 483 -----------------------------------------------------VDEIESQLAQK--GFKAAALHGDKDQA 507 (630)
Q Consensus 483 -----------------------------------------------------~~~l~~~L~~~--~~~~~~ihg~~~~~ 507 (630)
.+++.+.|.+. +.++..+|+++++.
T Consensus 218 ~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~ 297 (505)
T TIGR00595 218 SCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSR 297 (505)
T ss_pred hCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccC
Confidence 47788888876 78999999999876
Q ss_pred HH--HHHHHHhhcCCceEEEEcCCcccCCCCCCccEEEEeCCCC------------CHHHHHHHhhhcccCCCCCeEEEE
Q 006824 508 SR--MEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIAR------------DMDMHVHRIGRTGRAGDKDGTAYT 573 (630)
Q Consensus 508 ~r--~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~------------~~~~y~QriGR~gR~g~~~g~~~~ 573 (630)
.+ ..+++.|.+|+.+|||+|+++++|+|+|+|++|+.++... ....|+|++||+||.+ +.|.+++
T Consensus 298 ~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~-~~g~vii 376 (505)
T TIGR00595 298 KGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAE-DPGQVII 376 (505)
T ss_pred ccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCC-CCCEEEE
Confidence 65 8999999999999999999999999999999986544321 2457899999999988 5788886
Q ss_pred Ee
Q 006824 574 LV 575 (630)
Q Consensus 574 l~ 575 (630)
..
T Consensus 377 qt 378 (505)
T TIGR00595 377 QT 378 (505)
T ss_pred Ee
Confidence 54
No 99
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=1.6e-26 Score=255.13 Aligned_cols=317 Identities=16% Similarity=0.195 Sum_probs=224.6
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcC
Q 006824 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (630)
Q Consensus 247 ~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~ 326 (630)
.|++.|.-+--.+ .+.-|..++||.|||+++++|++.+.+. |..|.||+|++.||.|..+++..++..+|
T Consensus 82 ~~ydVQliGgl~L--~~G~IaEm~TGEGKTL~a~lp~~l~al~--------g~~VhIvT~ndyLA~RD~e~m~~l~~~lG 151 (908)
T PRK13107 82 RHFDVQLLGGMVL--DSNRIAEMRTGEGKTLTATLPAYLNALT--------GKGVHVITVNDYLARRDAENNRPLFEFLG 151 (908)
T ss_pred CcCchHHhcchHh--cCCccccccCCCCchHHHHHHHHHHHhc--------CCCEEEEeCCHHHHHHHHHHHHHHHHhcC
Confidence 3555665444444 4456999999999999999999887754 45599999999999999999999999999
Q ss_pred ceEEEEECCCChHHHHHHHHcCCcEEEeChHHH-HHHHHcc-ccc-----cCceeEEEecchhhhhcCC-----------
Q 006824 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRL-IDMLKMK-ALT-----MSRVTYLVLDEADRMFDLG----------- 388 (630)
Q Consensus 327 ~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L-~~~l~~~-~~~-----l~~i~~lVvDEah~~~~~~----------- 388 (630)
+++.++.++.+....... -+|||+++||+.| .++|+.+ ... .+.+.++||||||.|+-..
T Consensus 152 lsv~~i~~~~~~~~r~~~--Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIISg~~ 229 (908)
T PRK13107 152 LTVGINVAGLGQQEKKAA--YNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAA 229 (908)
T ss_pred CeEEEecCCCCHHHHHhc--CCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceeecCCC
Confidence 999999998876432221 2699999999999 8888765 222 3778999999999874210
Q ss_pred -----cHHHHHHHHhhcC-------------------CCCcEE-------------------------------------
Q 006824 389 -----FEPQIRSIVGQIR-------------------PDRQTL------------------------------------- 407 (630)
Q Consensus 389 -----~~~~v~~i~~~l~-------------------~~~q~l------------------------------------- 407 (630)
....+..+...+. ...+.+
T Consensus 230 ~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~~~~ 309 (908)
T PRK13107 230 EDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLLHH 309 (908)
T ss_pred ccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHHHHH
Confidence 1111111111111 011122
Q ss_pred -------------------------------------------------------------------------------E
Q 006824 408 -------------------------------------------------------------------------------L 408 (630)
Q Consensus 408 -------------------------------------------------------------------------------~ 408 (630)
+
T Consensus 310 i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL~G 389 (908)
T PRK13107 310 VNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKLAG 389 (908)
T ss_pred HHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHhhc
Confidence 2
Q ss_pred EeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCccccHHHHHHhccCCC-CCCCEEEEccchhhHHHHH
Q 006824 409 FSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIE 487 (630)
Q Consensus 409 ~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~-~~~~iLIF~~s~~~~~~l~ 487 (630)
||+|...+..++...|--+ +...... .........-.++.....|+..+++.+.... .+.++||||+|...++.++
T Consensus 390 MTGTa~te~~Ef~~iY~l~-Vv~IPTn--kp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls 466 (908)
T PRK13107 390 MTGTADTEAFEFQHIYGLD-TVVVPTN--RPMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLA 466 (908)
T ss_pred ccCCChHHHHHHHHHhCCC-EEECCCC--CCccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHH
Confidence 2222222222211111111 1000000 0000111111222334578888887776553 3458999999999999999
Q ss_pred HHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCC------------------------------
Q 006824 488 SQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIK------------------------------ 537 (630)
Q Consensus 488 ~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~------------------------------ 537 (630)
..|...++++..+|+..++.++..+...|+.|. |+|||++++||.||.
T Consensus 467 ~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (908)
T PRK13107 467 RLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIR 544 (908)
T ss_pred HHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhh
Confidence 999999999999999999999999999999998 999999999999997
Q ss_pred -------CccEEEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEeccccHH
Q 006824 538 -------SIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEAR 581 (630)
Q Consensus 538 -------~v~~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~ 581 (630)
+--+||-...+.|.-.-.|..||+||.| .+|.+.+|++-+|.-
T Consensus 545 ~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQG-DPGss~f~lSlED~L 594 (908)
T PRK13107 545 HDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQG-DAGSSRFYLSMEDSL 594 (908)
T ss_pred HHHHHHcCCCEEEecccCchHHHHhhhhcccccCC-CCCceeEEEEeCcHH
Confidence 2347888888999999999999999999 589999999988853
No 100
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.95 E-value=2.5e-25 Score=258.74 Aligned_cols=303 Identities=17% Similarity=0.245 Sum_probs=198.2
Q ss_pred CCCcHHHHHHHHHHH----c-CCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHH
Q 006824 246 EKPTSIQCQALPIIL----S-GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKK 320 (630)
Q Consensus 246 ~~~~~~Q~~~i~~il----~-g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~ 320 (630)
..|+++|..|+..+. . .+.++++++||||||.+++ .++..++.. ...+++|||+|+++|+.|+.+.+..
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai-~li~~L~~~-----~~~~rVLfLvDR~~L~~Qa~~~F~~ 485 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAI-ALMYRLLKA-----KRFRRILFLVDRSALGEQAEDAFKD 485 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHH-HHHHHHHhc-----CccCeEEEEecHHHHHHHHHHHHHh
Confidence 358999999998775 2 3689999999999998743 344444432 2246899999999999999999888
Q ss_pred HhhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHcc-----ccccCceeEEEecchhhhhc---------
Q 006824 321 FAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK-----ALTMSRVTYLVLDEADRMFD--------- 386 (630)
Q Consensus 321 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~-----~~~l~~i~~lVvDEah~~~~--------- 386 (630)
+....+.....+++....... .......|+|||++.|...+... ...+..+++||+||||+-..
T Consensus 486 ~~~~~~~~~~~i~~i~~L~~~--~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~ 563 (1123)
T PRK11448 486 TKIEGDQTFASIYDIKGLEDK--FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGE 563 (1123)
T ss_pred cccccccchhhhhchhhhhhh--cccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccch
Confidence 733212111112221110111 11234789999999998765321 13467889999999999531
Q ss_pred C------CcHHHHHHHHhhcCCCCcEEEEeecccHHHHHHHHHHcCCCe---------------------EEEEc--ccc
Q 006824 387 L------GFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPV---------------------RVTVG--EVG 437 (630)
Q Consensus 387 ~------~~~~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~---------------------~i~~~--~~~ 437 (630)
. ++...++.++.++. ...|+|||||...... +++.|+ .+... ..+
T Consensus 564 ~~~~~~~~~~~~yr~iL~yFd--A~~IGLTATP~r~t~~----~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~g 637 (1123)
T PRK11448 564 LQFRDQLDYVSKYRRVLDYFD--AVKIGLTATPALHTTE----IFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEG 637 (1123)
T ss_pred hccchhhhHHHHHHHHHhhcC--ccEEEEecCCccchhH----HhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEecccc
Confidence 0 12356777887764 4679999999754322 222332 11110 000
Q ss_pred ccccc---c---eEEE-----EEcCCc--------------cccH----HHHHHhccCCCCCCCEEEEccchhhHHHHHH
Q 006824 438 MANED---I---TQVV-----HVIPSD--------------AEKL----PWLLEKLPGMIDDGDVLVFASKKTTVDEIES 488 (630)
Q Consensus 438 ~~~~~---i---~q~~-----~~~~~~--------------~~k~----~~l~~~l~~~~~~~~iLIF~~s~~~~~~l~~ 488 (630)
..... + .... ...+.. .... ..+...+... ..+++||||.+..+|+.++.
T Consensus 638 i~~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~-~~~KtiIF~~s~~HA~~i~~ 716 (1123)
T PRK11448 638 IHFEKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPT-GEGKTLIFAATDAHADMVVR 716 (1123)
T ss_pred ccccccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhcc-CCCcEEEEEcCHHHHHHHHH
Confidence 00000 0 0000 000000 0001 1122222221 24799999999999999998
Q ss_pred HHHhC------C---CcEEEEeCCCCHHHHHHHHHHhhcCCc-eEEEEcCCcccCCCCCCccEEEEeCCCCCHHHHHHHh
Q 006824 489 QLAQK------G---FKAAALHGDKDQASRMEILQKFKSGVY-HVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRI 558 (630)
Q Consensus 489 ~L~~~------~---~~~~~ihg~~~~~~r~~~~~~F~~g~~-~VLvaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~Qri 558 (630)
.|.+. + ..+..+||+.+ ++..++..|+++.. .|||+++++.+|+|+|.+.+||++.++.|...|+||+
T Consensus 717 ~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmI 794 (1123)
T PRK11448 717 LLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQML 794 (1123)
T ss_pred HHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHH
Confidence 87653 2 24667999875 46789999999987 5899999999999999999999999999999999999
Q ss_pred hhcccCC
Q 006824 559 GRTGRAG 565 (630)
Q Consensus 559 GR~gR~g 565 (630)
||+.|.-
T Consensus 795 GRgtR~~ 801 (1123)
T PRK11448 795 GRATRLC 801 (1123)
T ss_pred hhhccCC
Confidence 9999974
No 101
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.94 E-value=6.2e-25 Score=213.13 Aligned_cols=316 Identities=19% Similarity=0.235 Sum_probs=220.6
Q ss_pred CCCcHHHHHHHHHHH----cCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHH
Q 006824 246 EKPTSIQCQALPIIL----SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (630)
Q Consensus 246 ~~~~~~Q~~~i~~il----~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 321 (630)
.+++|.|+.+-..++ +..++|+.|-||+|||.. +...+..++.+ |.++.|..|....|..++..++..
T Consensus 96 G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~~-------G~~vciASPRvDVclEl~~Rlk~a 167 (441)
T COG4098 96 GTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALNQ-------GGRVCIASPRVDVCLELYPRLKQA 167 (441)
T ss_pred cccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHHhc-------CCeEEEecCcccchHHHHHHHHHh
Confidence 479999998876655 668999999999999974 66777777655 788999999999999999888887
Q ss_pred hhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCcHHHHHHHHhhcC
Q 006824 322 AKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIR 401 (630)
Q Consensus 322 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~ 401 (630)
+. +..+.++||++...-. ..++|||.-.|.++- ..++++||||+|..--.........+-+..+
T Consensus 168 F~--~~~I~~Lyg~S~~~fr-------~plvVaTtHQLlrFk-------~aFD~liIDEVDAFP~~~d~~L~~Av~~ark 231 (441)
T COG4098 168 FS--NCDIDLLYGDSDSYFR-------APLVVATTHQLLRFK-------QAFDLLIIDEVDAFPFSDDQSLQYAVKKARK 231 (441)
T ss_pred hc--cCCeeeEecCCchhcc-------ccEEEEehHHHHHHH-------hhccEEEEeccccccccCCHHHHHHHHHhhc
Confidence 65 5788899998765422 789999998888764 3688999999998643332333334445556
Q ss_pred CCCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCccc-----cHH-HHHHhccCCC-CCCCEE
Q 006824 402 PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAE-----KLP-WLLEKLPGMI-DDGDVL 474 (630)
Q Consensus 402 ~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~-----k~~-~l~~~l~~~~-~~~~iL 474 (630)
...-+|.+|||+++.++.-+.. ++...+.+...-...+-..-.+.++..-.. |+. .|...|.... .+-++|
T Consensus 232 ~~g~~IylTATp~k~l~r~~~~--g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~l 309 (441)
T COG4098 232 KEGATIYLTATPTKKLERKILK--GNLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVL 309 (441)
T ss_pred ccCceEEEecCChHHHHHHhhh--CCeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEE
Confidence 6778999999999886554432 122122221111111111222233322111 111 3445554332 345899
Q ss_pred EEccchhhHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEEEEeCCC--CC
Q 006824 475 VFASKKTTVDEIESQLAQK--GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIA--RD 550 (630)
Q Consensus 475 IF~~s~~~~~~l~~~L~~~--~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p--~~ 550 (630)
||+++....+.++..|+.. ...++.+|+. ...|.+.++.|++|++.+||+|.+++||+.+|+|+.+|.=.-. .+
T Consensus 310 iF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfT 387 (441)
T COG4098 310 IFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFT 387 (441)
T ss_pred EEecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCccccc
Confidence 9999999999999999553 3455788885 3568899999999999999999999999999999988864433 46
Q ss_pred HHHHHHHhhhcccCCCC-CeEEEEEeccccHHHHHHHHHHH
Q 006824 551 MDMHVHRIGRTGRAGDK-DGTAYTLVTQKEARFAGELVNSL 590 (630)
Q Consensus 551 ~~~y~QriGR~gR~g~~-~g~~~~l~~~~d~~~~~~l~~~l 590 (630)
-+..+|..||+||.-.. .|.++ ||...-.+.+.+-.+.+
T Consensus 388 esaLVQIaGRvGRs~~~PtGdv~-FFH~G~skaM~~A~keI 427 (441)
T COG4098 388 ESALVQIAGRVGRSLERPTGDVL-FFHYGKSKAMKQARKEI 427 (441)
T ss_pred HHHHHHHhhhccCCCcCCCCcEE-EEeccchHHHHHHHHHH
Confidence 78899999999997643 35544 44444434444444433
No 102
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.94 E-value=8.9e-27 Score=244.93 Aligned_cols=310 Identities=21% Similarity=0.239 Sum_probs=231.4
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhc
Q 006824 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (630)
Q Consensus 246 ~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~ 325 (630)
..|.|+|.++|-.+-++..+++.|.|.+|||.++-.++...+ .++.+|++..|-++|.+|-++++..-++.
T Consensus 128 F~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sL--------r~kQRVIYTSPIKALSNQKYREl~~EF~D- 198 (1041)
T KOG0948|consen 128 FTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSL--------REKQRVIYTSPIKALSNQKYRELLEEFKD- 198 (1041)
T ss_pred cccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHH--------HhcCeEEeeChhhhhcchhHHHHHHHhcc-
Confidence 368899999999999999999999999999987665554443 23667999999999999999888776553
Q ss_pred CceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCcHHHHHHHHhhcCCCCc
Q 006824 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 405 (630)
Q Consensus 326 ~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q 405 (630)
|.+.+|...... .+..+|+|.+.|..++.++.--++.+.+||+||+|.|-+...+-.++.-+-.++.+.+
T Consensus 199 ---VGLMTGDVTInP-------~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr 268 (1041)
T KOG0948|consen 199 ---VGLMTGDVTINP-------DASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVR 268 (1041)
T ss_pred ---cceeecceeeCC-------CCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEeccccce
Confidence 344556554433 3779999999999999998888899999999999999988766666666667888999
Q ss_pred EEEEeecccHHHHHHHHHHcC---CCeEEEEcccccccccceEE---------EEEcCCc----cccHHHHHHhccCCC-
Q 006824 406 TLLFSATMPRKVEKLAREILS---DPVRVTVGEVGMANEDITQV---------VHVIPSD----AEKLPWLLEKLPGMI- 468 (630)
Q Consensus 406 ~l~~SAT~~~~~~~l~~~~~~---~~~~i~~~~~~~~~~~i~q~---------~~~~~~~----~~k~~~l~~~l~~~~- 468 (630)
.+++|||+|+. ..++.|+++ .|..+.+... ......+. +.+++.. .+.+......|....
T Consensus 269 ~VFLSATiPNA-~qFAeWI~~ihkQPcHVVYTdy--RPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~ 345 (1041)
T KOG0948|consen 269 FVFLSATIPNA-RQFAEWICHIHKQPCHVVYTDY--RPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGE 345 (1041)
T ss_pred EEEEeccCCCH-HHHHHHHHHHhcCCceEEeecC--CCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCC
Confidence 99999999977 457888764 4555543321 11111111 1111110 011222222221110
Q ss_pred ------------------------------------CCCCEEEEccchhhHHHHHHHHHhC-------------------
Q 006824 469 ------------------------------------DDGDVLVFASKKTTVDEIESQLAQK------------------- 493 (630)
Q Consensus 469 ------------------------------------~~~~iLIF~~s~~~~~~l~~~L~~~------------------- 493 (630)
...++|||+-++.+|+.++-.+.+.
T Consensus 346 ~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi 425 (1041)
T KOG0948|consen 346 SDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAI 425 (1041)
T ss_pred CccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHH
Confidence 1236999999999999998877652
Q ss_pred --------------------CCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEEEEeCC------
Q 006824 494 --------------------GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDI------ 547 (630)
Q Consensus 494 --------------------~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~------ 547 (630)
.-.++.+|+|+-+--++-+.-.|..|-+++|+||..++.|+|.|. ++|++-..
T Consensus 426 ~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPA-kTVvFT~~rKfDG~ 504 (1041)
T KOG0948|consen 426 DQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPA-KTVVFTAVRKFDGK 504 (1041)
T ss_pred HhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcc-eeEEEeeccccCCc
Confidence 124889999999999999999999999999999999999999996 55555332
Q ss_pred ---CCCHHHHHHHhhhcccCC-CCCeEEEEEeccc
Q 006824 548 ---ARDMDMHVHRIGRTGRAG-DKDGTAYTLVTQK 578 (630)
Q Consensus 548 ---p~~~~~y~QriGR~gR~g-~~~g~~~~l~~~~ 578 (630)
+-+--.|+||.||+||.| +..|.|+.+++..
T Consensus 505 ~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 505 KFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred ceeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 125668999999999999 7789999998753
No 103
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.94 E-value=3.3e-26 Score=230.55 Aligned_cols=364 Identities=18% Similarity=0.252 Sum_probs=240.2
Q ss_pred ccCccCCccccCCCHHHHHHHHHHcCceeccCCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcC----
Q 006824 187 KDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSG---- 262 (630)
Q Consensus 187 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g---- 262 (630)
-..|..++++.++ |..+.+..+........|..+. ..+-|+|.+.+.|+...
T Consensus 148 ~rl~eh~pE~~~v----~~dlde~~p~i~e~aeqP~dli--------------------i~LL~fQkE~l~Wl~~QE~Ss 203 (791)
T KOG1002|consen 148 LRLYEHHPELRNV----FTDLDEANPVIAERAEQPDDLI--------------------IPLLPFQKEGLAWLTSQEESS 203 (791)
T ss_pred hhhhhcCchhhhh----hhhhhhcCchhhhcccCcccce--------------------ecchhhhHHHHHHHHHhhhhh
Confidence 3455666665554 6667766666666666665444 56789999999998744
Q ss_pred -CCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHH
Q 006824 263 -RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ 341 (630)
Q Consensus 263 -~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~ 341 (630)
...|+..++|.|||++.+..+++.+ .+...|||+|+.+|. ||.+++..+.. |-..+.+|.|.++...
T Consensus 204 ~~GGiLADEMGMGKTIQtIaLllae~---------~ra~tLVvaP~VAlm-QW~nEI~~~T~--gslkv~~YhG~~R~~n 271 (791)
T KOG1002|consen 204 VAGGILADEMGMGKTIQTIALLLAEV---------DRAPTLVVAPTVALM-QWKNEIERHTS--GSLKVYIYHGAKRDKN 271 (791)
T ss_pred hccceehhhhccchHHHHHHHHHhcc---------ccCCeeEEccHHHHH-HHHHHHHHhcc--CceEEEEEecccccCC
Confidence 4679999999999998776666543 133389999999987 89999999987 6666778888888888
Q ss_pred HHHHHcCCcEEEeChHHHHHHHHccccc-------------cCc--eeEEEecchhhhhcCC------------------
Q 006824 342 FKELKAGCEIVIATPGRLIDMLKMKALT-------------MSR--VTYLVLDEADRMFDLG------------------ 388 (630)
Q Consensus 342 ~~~l~~~~dIiv~Tp~~L~~~l~~~~~~-------------l~~--i~~lVvDEah~~~~~~------------------ 388 (630)
+.++. ++|++++|+..+....++.... |.+ +..||+||||.+.+..
T Consensus 272 ikel~-~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK~R~snTArAV~~L~tt~rw~L 350 (791)
T KOG1002|consen 272 IKELM-NYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIKDRQSNTARAVFALETTYRWCL 350 (791)
T ss_pred HHHhh-cCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhcccccccccHHHHHHhhHhhhhhhc
Confidence 77776 4999999999998877653221 233 4569999999874421
Q ss_pred -------cHHHHHHHHhhcCCC---------------------------------CcEEEEeecccHHHHHH--------
Q 006824 389 -------FEPQIRSIVGQIRPD---------------------------------RQTLLFSATMPRKVEKL-------- 420 (630)
Q Consensus 389 -------~~~~v~~i~~~l~~~---------------------------------~q~l~~SAT~~~~~~~l-------- 420 (630)
....+.+++..++.+ .++.+|.+.++..+..+
T Consensus 351 SGTPLQNrigElySLiRFL~i~Pfsyyfc~~cdc~~~~~~ftdr~~c~~c~h~~m~h~~~~n~~mlk~IqkfG~eGpGk~ 430 (791)
T KOG1002|consen 351 SGTPLQNRIGELYSLIRFLNINPFSYYFCTKCDCASLDWKFTDRMHCDHCSHNIMQHTCFFNHFMLKPIQKFGVEGPGKE 430 (791)
T ss_pred cCCcchhhHHHHHHHHHHHccCcchhhhhhhccccccceeecccccCCcccchhhhhhhhhcccccccchhhcccCchHH
Confidence 011122222222210 12333333332111100
Q ss_pred --------------------------------------------------------------------------------
Q 006824 421 -------------------------------------------------------------------------------- 420 (630)
Q Consensus 421 -------------------------------------------------------------------------------- 420 (630)
T Consensus 431 af~~~h~llk~ImlrrTkl~RAdDLgLPPRiv~vRrD~fn~eE~D~YeSLY~dSkrkfntyieeGvvlNNYAnIF~LitR 510 (791)
T KOG1002|consen 431 AFNNIHTLLKNIMLRRTKLERADDLGLPPRIVTVRRDFFNEEEKDLYESLYKDSKRKFNTYIEEGVVLNNYANIFTLITR 510 (791)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccCCCccceeeehhhhhhHHHHHHHHHHHhhHHhhhhHHhhhhhhhhHHHHHHHHHH
Confidence
Q ss_pred HHHHcCCCeEEEEcccc-cccccce-EEEEE------------------------------------cC-----------
Q 006824 421 AREILSDPVRVTVGEVG-MANEDIT-QVVHV------------------------------------IP----------- 451 (630)
Q Consensus 421 ~~~~~~~~~~i~~~~~~-~~~~~i~-q~~~~------------------------------------~~----------- 451 (630)
++.....|..+...... ....+.. +.... ++
T Consensus 511 mRQ~aDHP~LVl~S~~~n~~~enk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDls 590 (791)
T KOG1002|consen 511 MRQAADHPDLVLYSANANLPDENKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLS 590 (791)
T ss_pred HHHhccCcceeeehhhcCCCccccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccccc
Confidence 01111112222221000 0000000 00000 00
Q ss_pred --------------------------CccccHHHHHHhccCCCC---CCCEEEEccchhhHHHHHHHHHhCCCcEEEEeC
Q 006824 452 --------------------------SDAEKLPWLLEKLPGMID---DGDVLVFASKKTTVDEIESQLAQKGFKAAALHG 502 (630)
Q Consensus 452 --------------------------~~~~k~~~l~~~l~~~~~---~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg 502 (630)
..+.|+..|.+.|.-... .-+.|||.+...+.+.+...|.+.|+.|+.+.|
T Consensus 591 e~alek~~l~~Fk~sSIlnRinm~~~qsSTKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~G 670 (791)
T KOG1002|consen 591 EPALEKTDLKGFKASSILNRINMDDWQSSTKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVG 670 (791)
T ss_pred chhhhhcchhhhhhHHHhhhcchhhhcchhHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEecc
Confidence 123566666666543322 347899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhcC-CceE-EEEcCCcccCCCCCCccEEEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEeccccH
Q 006824 503 DKDQASRMEILQKFKSG-VYHV-LIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (630)
Q Consensus 503 ~~~~~~r~~~~~~F~~g-~~~V-LvaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~ 580 (630)
+|++..|..+++.|++. .+.| |++-.+++..+|+..+++|+++||+|||..-+|...|.+|.|+....-++-|..++.
T Consensus 671 sMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEns 750 (791)
T KOG1002|consen 671 SMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENS 750 (791)
T ss_pred CCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhcc
Confidence 99999999999999986 3554 567799999999999999999999999999999999999999655554444443332
Q ss_pred HHHHHHHH
Q 006824 581 RFAGELVN 588 (630)
Q Consensus 581 ~~~~~l~~ 588 (630)
.-.+|++
T Consensus 751 -iE~kIie 757 (791)
T KOG1002|consen 751 -IEEKIIE 757 (791)
T ss_pred -HHHHHHH
Confidence 2234444
No 104
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.94 E-value=3.5e-25 Score=235.24 Aligned_cols=315 Identities=22% Similarity=0.262 Sum_probs=216.6
Q ss_pred CCCcHHHHHHHHHHH----cCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHH
Q 006824 246 EKPTSIQCQALPIIL----SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (630)
Q Consensus 246 ~~~~~~Q~~~i~~il----~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 321 (630)
..|.|+|+.++.|+. ++...|+...||.|||++ ++..|..++..... -..+|||||. .+..||..++..|
T Consensus 204 ~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQ-iisFLaaL~~S~k~----~~paLIVCP~-Tii~qW~~E~~~w 277 (923)
T KOG0387|consen 204 SKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQ-IISFLAALHHSGKL----TKPALIVCPA-TIIHQWMKEFQTW 277 (923)
T ss_pred HHhhHHHHHHHHHHHHHHhccCCCeecccccCccchh-HHHHHHHHhhcccc----cCceEEEccH-HHHHHHHHHHHHh
Confidence 357899999999986 567889999999999976 34445555444211 1348999996 6777999999999
Q ss_pred hhhcCceEEEEECCCCh--------HHHHH-----HHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCC
Q 006824 322 AKSHGIRVSAVYGGMSK--------LDQFK-----ELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG 388 (630)
Q Consensus 322 ~~~~~~~~~~~~gg~~~--------~~~~~-----~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~ 388 (630)
+. .+++.++++..+. ..... ....+..|+|+|+..+.-. ...+.-..|+|+|+||.|+|-+..
T Consensus 278 ~p--~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~--~d~l~~~~W~y~ILDEGH~IrNpn 353 (923)
T KOG0387|consen 278 WP--PFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ--GDDLLGILWDYVILDEGHRIRNPN 353 (923)
T ss_pred Cc--ceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc--CcccccccccEEEecCcccccCCc
Confidence 87 5777777776552 11111 1123467999999877542 122233468999999999987653
Q ss_pred cHHHHHHHHhhcCCCCcEEEEeeccc-HHHHHHHH---------------------------------------------
Q 006824 389 FEPQIRSIVGQIRPDRQTLLFSATMP-RKVEKLAR--------------------------------------------- 422 (630)
Q Consensus 389 ~~~~v~~i~~~l~~~~q~l~~SAT~~-~~~~~l~~--------------------------------------------- 422 (630)
.++...+..++. .+-|++|+|+- +++.+|..
T Consensus 354 --s~islackki~T-~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~ 430 (923)
T KOG0387|consen 354 --SKISLACKKIRT-VHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAV 430 (923)
T ss_pred --cHHHHHHHhccc-cceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHH
Confidence 233333444432 33355566642 22222211
Q ss_pred ----------------------------------------------------------------------HHcCCCeEEE
Q 006824 423 ----------------------------------------------------------------------EILSDPVRVT 432 (630)
Q Consensus 423 ----------------------------------------------------------------------~~~~~~~~i~ 432 (630)
.+|..|..+.
T Consensus 431 ~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~ 510 (923)
T KOG0387|consen 431 ALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLD 510 (923)
T ss_pred HHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCccccc
Confidence 1111111111
Q ss_pred EcccccccccceEEEE--EcCCccccHHHHHHhccCCCC-CCCEEEEccchhhHHHHHHHHH-hCCCcEEEEeCCCCHHH
Q 006824 433 VGEVGMANEDITQVVH--VIPSDAEKLPWLLEKLPGMID-DGDVLVFASKKTTVDEIESQLA-QKGFKAAALHGDKDQAS 508 (630)
Q Consensus 433 ~~~~~~~~~~i~q~~~--~~~~~~~k~~~l~~~l~~~~~-~~~iLIF~~s~~~~~~l~~~L~-~~~~~~~~ihg~~~~~~ 508 (630)
-.. ....+.-. -......|+..+..+|..+.. +.++|+|..++.+.+.+..+|. ..++.++.+.|.++...
T Consensus 511 ~~~-----~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~ 585 (923)
T KOG0387|consen 511 RRD-----EDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAAL 585 (923)
T ss_pred Ccc-----cccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccch
Confidence 000 00000000 011234577777777776644 4589999999999999999999 58999999999999999
Q ss_pred HHHHHHHhhcCCc--eEEEEcCCcccCCCCCCccEEEEeCCCCCHHHHHHHhhhcccCCCCCe-EEEEEeccc
Q 006824 509 RMEILQKFKSGVY--HVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDG-TAYTLVTQK 578 (630)
Q Consensus 509 r~~~~~~F~~g~~--~VLvaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~QriGR~gR~g~~~g-~~~~l~~~~ 578 (630)
|..++..|+++.. -+|++|.+.+-|+|+.+++.||+|||.|||.+-.|..-|+.|.|++.. .+|.|++..
T Consensus 586 R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~g 658 (923)
T KOG0387|consen 586 RQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAG 658 (923)
T ss_pred hhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCC
Confidence 9999999998764 368899999999999999999999999999999999999999996654 556677753
No 105
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.94 E-value=6.5e-26 Score=246.06 Aligned_cols=342 Identities=22% Similarity=0.263 Sum_probs=246.4
Q ss_pred CCHHHHH-HHHHcCCCCCcHHHHHHH--HHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccH
Q 006824 232 FSTQLMH-AISKQGYEKPTSIQCQAL--PIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTR 308 (630)
Q Consensus 232 l~~~l~~-~l~~~~~~~~~~~Q~~~i--~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr 308 (630)
+++.+.+ .....|..+++.+|.+++ |.++.++++|+.+||+.|||++.-+.++..++.. +..++.++|..
T Consensus 207 ~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~-------rr~~llilp~v 279 (1008)
T KOG0950|consen 207 LPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR-------RRNVLLILPYV 279 (1008)
T ss_pred CchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH-------hhceeEeccee
Confidence 4444444 445568899999999998 6788999999999999999999999999888654 45589999999
Q ss_pred HHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHc--cccccCceeEEEecchhhhhc
Q 006824 309 ELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM--KALTMSRVTYLVLDEADRMFD 386 (630)
Q Consensus 309 ~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~--~~~~l~~i~~lVvDEah~~~~ 386 (630)
..+..-...+..+....|+.+...+|....... .+.-++.|||.++-..++.. ..-.+..+++|||||.|.+.+
T Consensus 280 siv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~----~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d 355 (1008)
T KOG0950|consen 280 SIVQEKISALSPFSIDLGFPVEEYAGRFPPEKR----RKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGD 355 (1008)
T ss_pred ehhHHHHhhhhhhccccCCcchhhcccCCCCCc----ccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeec
Confidence 999888888999999999999988876555433 22368999999988776654 223467899999999999999
Q ss_pred CCcHHHHHHHHhhc-----CCCCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCccccH----
Q 006824 387 LGFEPQIRSIVGQI-----RPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKL---- 457 (630)
Q Consensus 387 ~~~~~~v~~i~~~l-----~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~---- 457 (630)
.+.+..++.++..+ ....|+|+||||+++. .++..++..-+...-...-...+.+.--...... .+.
T Consensus 356 ~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~--~lL~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~--~r~~~lr 431 (1008)
T KOG0950|consen 356 KGRGAILELLLAKILYENLETSVQIIGMSATIPNN--SLLQDWLDAFVYTTRFRPVPLKEYIKPGSLIYES--SRNKVLR 431 (1008)
T ss_pred cccchHHHHHHHHHHHhccccceeEeeeecccCCh--HHHHHHhhhhheecccCcccchhccCCCcccccc--hhhHHHH
Confidence 98888877776543 3456899999999864 2333333322111100000000000000000000 011
Q ss_pred ---------------HHHHHhccCCCCCC-CEEEEccchhhHHHHHHHHHhC----------------------------
Q 006824 458 ---------------PWLLEKLPGMIDDG-DVLVFASKKTTVDEIESQLAQK---------------------------- 493 (630)
Q Consensus 458 ---------------~~l~~~l~~~~~~~-~iLIF~~s~~~~~~l~~~L~~~---------------------------- 493 (630)
..++.+..+....+ .+||||+++..|+.++..+...
T Consensus 432 ~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~ 511 (1008)
T KOG0950|consen 432 EIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPG 511 (1008)
T ss_pred HhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCc
Confidence 12222222222334 5999999999999888655430
Q ss_pred ----------CCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEEEEe---C-CCCCHHHHHHHhh
Q 006824 494 ----------GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNF---D-IARDMDMHVHRIG 559 (630)
Q Consensus 494 ----------~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI~~---~-~p~~~~~y~QriG 559 (630)
.+.+.++|.|++..+|..+...|++|-+.|++||+.++.|+|+|..+.+|-. + .......|.||+|
T Consensus 512 ~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~G 591 (1008)
T KOG0950|consen 512 ILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVG 591 (1008)
T ss_pred ccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhh
Confidence 3458899999999999999999999999999999999999999987766632 2 2335679999999
Q ss_pred hcccCC-CCCeEEEEEeccccHHHHHHHHH
Q 006824 560 RTGRAG-DKDGTAYTLVTQKEARFAGELVN 588 (630)
Q Consensus 560 R~gR~g-~~~g~~~~l~~~~d~~~~~~l~~ 588 (630)
|+||+| +..|.+++.+.+.+......+++
T Consensus 592 RAGR~gidT~GdsiLI~k~~e~~~~~~lv~ 621 (1008)
T KOG0950|consen 592 RAGRTGIDTLGDSILIIKSSEKKRVRELVN 621 (1008)
T ss_pred hhhhcccccCcceEEEeeccchhHHHHHHh
Confidence 999999 66799999999988766555554
No 106
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.93 E-value=4.2e-25 Score=207.44 Aligned_cols=166 Identities=35% Similarity=0.575 Sum_probs=143.3
Q ss_pred cHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCce
Q 006824 249 TSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIR 328 (630)
Q Consensus 249 ~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~ 328 (630)
||+|.++++.+.+|+++++.+|||+|||++|+++++..+... ...++||++|+++|+.|+...+.+++...+++
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~------~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~ 74 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG------KDARVLIIVPTRALAEQQFERLRKFFSNTNVR 74 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT------SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSS
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC------CCceEEEEeecccccccccccccccccccccc
Confidence 689999999999999999999999999999999999988653 13479999999999999999999999877789
Q ss_pred EEEEECCCChH-HHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCcHHHHHHHHhhcCC--CCc
Q 006824 329 VSAVYGGMSKL-DQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRP--DRQ 405 (630)
Q Consensus 329 ~~~~~gg~~~~-~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~--~~q 405 (630)
+..++++.... .....+..+++|+|+||++|...+......+.++++||+||+|.+..+.+...+..++..+.. +.|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~ 154 (169)
T PF00270_consen 75 VVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQ 154 (169)
T ss_dssp EEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSE
T ss_pred cccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCc
Confidence 99999988865 444445567999999999999999875556777999999999999988888889998888743 589
Q ss_pred EEEEeecccHHHHHH
Q 006824 406 TLLFSATMPRKVEKL 420 (630)
Q Consensus 406 ~l~~SAT~~~~~~~l 420 (630)
++++|||+++.++.+
T Consensus 155 ~i~~SAT~~~~~~~~ 169 (169)
T PF00270_consen 155 IILLSATLPSNVEKL 169 (169)
T ss_dssp EEEEESSSTHHHHHH
T ss_pred EEEEeeCCChhHhhC
Confidence 999999999776653
No 107
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.93 E-value=2.9e-25 Score=248.62 Aligned_cols=311 Identities=21% Similarity=0.254 Sum_probs=231.8
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcC
Q 006824 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (630)
Q Consensus 247 ~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~ 326 (630)
.|.++|++++.++..|..++++||||+|||.+.-.++...+ .++.++++.+|.++|.+|.+..+...+....
T Consensus 119 ~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al--------~~~qrviYTsPIKALsNQKyrdl~~~fgdv~ 190 (1041)
T COG4581 119 ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALAL--------RDGQRVIYTSPIKALSNQKYRDLLAKFGDVA 190 (1041)
T ss_pred CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHH--------HcCCceEeccchhhhhhhHHHHHHHHhhhhh
Confidence 68999999999999999999999999999987655544433 2366699999999999999988876654332
Q ss_pred ceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCcHHHHHHHHhhcCCCCcE
Q 006824 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQT 406 (630)
Q Consensus 327 ~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q~ 406 (630)
-.+.+++|..... .++.++|+|-+.|..++.++...+..+..||+||+|.|.+...+...+.++-+++...|+
T Consensus 191 ~~vGL~TGDv~IN-------~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~v~~ 263 (1041)
T COG4581 191 DMVGLMTGDVSIN-------PDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPDHVRF 263 (1041)
T ss_pred hhccceecceeeC-------CCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcCCCCcE
Confidence 2345566665543 348899999999999999998889999999999999999998888899999999999999
Q ss_pred EEEeecccHHHHHHHHHHcC---CCeEEEEcccccccccceEEE-------EEcCCcc----------------------
Q 006824 407 LLFSATMPRKVEKLAREILS---DPVRVTVGEVGMANEDITQVV-------HVIPSDA---------------------- 454 (630)
Q Consensus 407 l~~SAT~~~~~~~l~~~~~~---~~~~i~~~~~~~~~~~i~q~~-------~~~~~~~---------------------- 454 (630)
|+||||.|+. .++..|+.. .|..+.+.. ....+..+.+ ..++...
T Consensus 264 v~LSATv~N~-~EF~~Wi~~~~~~~~~vv~t~--~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~ 340 (1041)
T COG4581 264 VFLSATVPNA-EEFAEWIQRVHSQPIHVVSTE--HRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVR 340 (1041)
T ss_pred EEEeCCCCCH-HHHHHHHHhccCCCeEEEeec--CCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchhcc
Confidence 9999999976 557777652 233332221 1111111111 1111000
Q ss_pred ------------------------ccHHHHHHhccCCCCCCCEEEEccchhhHHHHHHHHHhC-----------------
Q 006824 455 ------------------------EKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK----------------- 493 (630)
Q Consensus 455 ------------------------~k~~~l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~----------------- 493 (630)
.+...+++.+... ..-++|+||-++..|+..+..+...
T Consensus 341 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~-~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~ 419 (1041)
T COG4581 341 ETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKD-NLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIID 419 (1041)
T ss_pred ccCccccccccccccccCCcccccccchHHHhhhhhh-cCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHH
Confidence 0001112222111 1237999999999998888776521
Q ss_pred -----------CC-------------cEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEEEEeCC--
Q 006824 494 -----------GF-------------KAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDI-- 547 (630)
Q Consensus 494 -----------~~-------------~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~-- 547 (630)
++ .++++|++|=+.-+..+...|..|-++|+++|.+++.|+|.|. ++|+++..
T Consensus 420 ~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPa-rtvv~~~l~K 498 (1041)
T COG4581 420 HAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPA-RTVVFTSLSK 498 (1041)
T ss_pred HHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcc-cceeeeeeEE
Confidence 11 2568999999999999999999999999999999999999996 55555443
Q ss_pred -------CCCHHHHHHHhhhcccCC-CCCeEEEEEecc
Q 006824 548 -------ARDMDMHVHRIGRTGRAG-DKDGTAYTLVTQ 577 (630)
Q Consensus 548 -------p~~~~~y~QriGR~gR~g-~~~g~~~~l~~~ 577 (630)
+-++..|.|+.||+||.| +..|.+++.-.+
T Consensus 499 ~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~ 536 (1041)
T COG4581 499 FDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPP 536 (1041)
T ss_pred ecCCceeecChhHHHHhhhhhccccccccceEEEecCC
Confidence 336889999999999999 777999988443
No 108
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.93 E-value=2.2e-25 Score=246.18 Aligned_cols=376 Identities=18% Similarity=0.295 Sum_probs=242.7
Q ss_pred CCcccCccCCccccCCCHHHHHHHHHHcCcee---ccCCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHH
Q 006824 184 PFNKDFYQDSASISGMSEQDVMEYKKSLAIRV---SGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIIL 260 (630)
Q Consensus 184 ~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~p~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il 260 (630)
|+.-..|.....|..+...++..+...-.... .+...-++-..|..+...+..+. | ..++.+|..++++++
T Consensus 310 pY~e~TWE~~~~I~~~~~~~~~~~~~Re~sk~~p~~~~~~~~~rp~~~Kle~qp~~~~-----g-~~LRdyQLeGlNWl~ 383 (1373)
T KOG0384|consen 310 PYEECTWEDAEDIAKKAQEEIEEFQSRENSKTLPNKGCKYRPQRPRFRKLEKQPEYKG-----G-NELRDYQLEGLNWLL 383 (1373)
T ss_pred CcccccccchhhhhhhHHHHHHHHhhhhccccCCCCccccCccchhHHHhhcCccccc-----c-chhhhhhcccchhHH
Confidence 44445666666666666666666654432111 11111112223333322222221 2 679999999999987
Q ss_pred ----cCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCC
Q 006824 261 ----SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGM 336 (630)
Q Consensus 261 ----~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~ 336 (630)
.+.++|+...+|.|||++ .+.+|..++... ...|| .|||+|...+. .|..++..|+ .+++++.+|..
T Consensus 384 ~~W~~~~n~ILADEmgLgktvq-ti~fl~~l~~~~---~~~gp-flvvvplst~~-~W~~ef~~w~---~mn~i~y~g~~ 454 (1373)
T KOG0384|consen 384 YSWYKRNNCILADEMGLGKTVQ-TITFLSYLFHSL---QIHGP-FLVVVPLSTIT-AWEREFETWT---DMNVIVYHGNL 454 (1373)
T ss_pred HHHHhcccceehhhcCCCcchH-HHHHHHHHHHhh---hccCC-eEEEeehhhhH-HHHHHHHHHh---hhceeeeecch
Confidence 678999999999999976 344555554432 12366 58999987666 5889999987 68888888877
Q ss_pred ChHHHHHHHH----c-----CCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCcHHHHHHHHhhcCCCCcEE
Q 006824 337 SKLDQFKELK----A-----GCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTL 407 (630)
Q Consensus 337 ~~~~~~~~l~----~-----~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q~l 407 (630)
...+.++... . ..+++++|++.++.-- ..+.--.+.+++|||||++-+. ...+...+..++... -|
T Consensus 455 ~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk--~~L~~i~w~~~~vDeahrLkN~--~~~l~~~l~~f~~~~-rl 529 (1373)
T KOG0384|consen 455 ESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDK--AELSKIPWRYLLVDEAHRLKND--ESKLYESLNQFKMNH-RL 529 (1373)
T ss_pred hHHHHHHHHHheecCCccccccceeehhhHHHhccH--hhhccCCcceeeecHHhhcCch--HHHHHHHHHHhcccc-ee
Confidence 7666655532 1 2689999998775421 1222235679999999997654 233333455554333 36
Q ss_pred EEeeccc-HHHHHHHHHH-cCCCeEEEEc--------------------------------cc-ccccccceEEE-----
Q 006824 408 LFSATMP-RKVEKLAREI-LSDPVRVTVG--------------------------------EV-GMANEDITQVV----- 447 (630)
Q Consensus 408 ~~SAT~~-~~~~~l~~~~-~~~~~~i~~~--------------------------------~~-~~~~~~i~q~~----- 447 (630)
++|+|+- +++.+|+.-+ +-.|..+... .+ ........++.
T Consensus 530 litgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdvekslp~k~E~IlrVels 609 (1373)
T KOG0384|consen 530 LITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKSLPPKEETILRVELS 609 (1373)
T ss_pred eecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccCCCCCcceEEEeehh
Confidence 6677753 2333332110 0000000000 00 00000000000
Q ss_pred -------------------------------------------EEcC-----------------------CccccHHHHH
Q 006824 448 -------------------------------------------HVIP-----------------------SDAEKLPWLL 461 (630)
Q Consensus 448 -------------------------------------------~~~~-----------------------~~~~k~~~l~ 461 (630)
..+. ..+.|+..|-
T Consensus 610 ~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI~sSGKlVLLD 689 (1373)
T KOG0384|consen 610 DLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALIQSSGKLVLLD 689 (1373)
T ss_pred HHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHHHHhcCcEEeHH
Confidence 0000 0122322233
Q ss_pred HhccCCCC-CCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhc---CCceEEEEcCCcccCCCCC
Q 006824 462 EKLPGMID-DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKS---GVYHVLIATDVAARGLDIK 537 (630)
Q Consensus 462 ~~l~~~~~-~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~---g~~~VLvaT~~~~~Gldi~ 537 (630)
.+|..+.. +++||||.+...+.+.|++||...+|++..|.|.....-|..++.+|.. ..+.+|+||.+++-|||+.
T Consensus 690 KLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLa 769 (1373)
T KOG0384|consen 690 KLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLA 769 (1373)
T ss_pred HHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCccccccc
Confidence 33333322 4689999999999999999999999999999999999999999999986 4678999999999999999
Q ss_pred CccEEEEeCCCCCHHHHHHHhhhcccCCCC-CeEEEEEecccc
Q 006824 538 SIKSVVNFDIARDMDMHVHRIGRTGRAGDK-DGTAYTLVTQKE 579 (630)
Q Consensus 538 ~v~~VI~~~~p~~~~~y~QriGR~gR~g~~-~g~~~~l~~~~d 579 (630)
.+++||+||..|||..-+|...||+|+|++ ...+|.|+|..-
T Consensus 770 tADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~T 812 (1373)
T KOG0384|consen 770 TADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNT 812 (1373)
T ss_pred ccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCc
Confidence 999999999999999999999999999954 467889999864
No 109
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.91 E-value=5.4e-23 Score=218.40 Aligned_cols=322 Identities=21% Similarity=0.332 Sum_probs=225.8
Q ss_pred CCcHHHHHHHHHHH----cCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHh
Q 006824 247 KPTSIQCQALPIIL----SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (630)
Q Consensus 247 ~~~~~Q~~~i~~il----~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 322 (630)
+|-++|.-+++|+. ++-+.|+..++|.|||.+ +++.+..+... ...||. |||||...|- .|..++.+||
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQ-vIaFlayLkq~----g~~gpH-LVVvPsSTle-NWlrEf~kwC 471 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQ-VIAFLAYLKQI----GNPGPH-LVVVPSSTLE-NWLREFAKWC 471 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhH-HHHHHHHHHHc----CCCCCc-EEEecchhHH-HHHHHHHHhC
Confidence 47899999999975 445779999999999976 45566666543 235675 9999998776 5999999999
Q ss_pred hhcCceEEEEECCCChHHHHHHHHc----CCcEEEeChHHHHHHH-HccccccCceeEEEecchhhhhcCCcHHHHHHHH
Q 006824 323 KSHGIRVSAVYGGMSKLDQFKELKA----GCEIVIATPGRLIDML-KMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIV 397 (630)
Q Consensus 323 ~~~~~~~~~~~gg~~~~~~~~~l~~----~~dIiv~Tp~~L~~~l-~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~ 397 (630)
+ .+++...||.......++.... +.+|+|+||.....-- .+..+.-.++.++|+||+|.+-++. ...+..++
T Consensus 472 P--sl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~-SeRy~~LM 548 (941)
T KOG0389|consen 472 P--SLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT-SERYKHLM 548 (941)
T ss_pred C--ceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc-hHHHHHhc
Confidence 8 7888999998766665554432 5899999996554211 1122234578999999999988775 22333333
Q ss_pred hhcCCCCcEEEEeecccH-HHHHHHH---------------------------------------------HH-------
Q 006824 398 GQIRPDRQTLLFSATMPR-KVEKLAR---------------------------------------------EI------- 424 (630)
Q Consensus 398 ~~l~~~~q~l~~SAT~~~-~~~~l~~---------------------------------------------~~------- 424 (630)
. ++ ..+.|++|+|+-. ++.+|+. .+
T Consensus 549 ~-I~-An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFILR 626 (941)
T KOG0389|consen 549 S-IN-ANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFILR 626 (941)
T ss_pred c-cc-ccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHHH
Confidence 2 12 3345888999732 1111100 00
Q ss_pred ------cCC-Ce---EEEE----------------------cccc----------------cccccce------------
Q 006824 425 ------LSD-PV---RVTV----------------------GEVG----------------MANEDIT------------ 444 (630)
Q Consensus 425 ------~~~-~~---~i~~----------------------~~~~----------------~~~~~i~------------ 444 (630)
+.+ |- .|.. .... .+++...
T Consensus 627 R~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~~ 706 (941)
T KOG0389|consen 627 RLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLRK 706 (941)
T ss_pred HHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHHH
Confidence 000 00 0000 0000 0000000
Q ss_pred ------------------------------------EEE----EEcC----CccccHHHHHHhccCCCC-CCCEEEEccc
Q 006824 445 ------------------------------------QVV----HVIP----SDAEKLPWLLEKLPGMID-DGDVLVFASK 479 (630)
Q Consensus 445 ------------------------------------q~~----~~~~----~~~~k~~~l~~~l~~~~~-~~~iLIF~~s 479 (630)
++- ..+. -.+.|+..|-.+|..... +.+||||...
T Consensus 707 mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQF 786 (941)
T KOG0389|consen 707 MAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQF 786 (941)
T ss_pred HHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeHH
Confidence 000 0000 134566677777766544 4689999999
Q ss_pred hhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCC--ceEEEEcCCcccCCCCCCccEEEEeCCCCCHHHHHHH
Q 006824 480 KTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGV--YHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHR 557 (630)
Q Consensus 480 ~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~--~~VLvaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~Qr 557 (630)
..+.+.|..+|...++.+..+.|.+...+|..++..|...+ .-+|++|.+++-|||+.++++||+||...||-.-.|.
T Consensus 787 TqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QA 866 (941)
T KOG0389|consen 787 TQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQA 866 (941)
T ss_pred HHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchh
Confidence 99999999999999999999999999999999999998765 4578999999999999999999999999999999999
Q ss_pred hhhcccCC-CCCeEEEEEeccccH
Q 006824 558 IGRTGRAG-DKDGTAYTLVTQKEA 580 (630)
Q Consensus 558 iGR~gR~g-~~~g~~~~l~~~~d~ 580 (630)
-.||+|.| .++.+++.|+++.-.
T Consensus 867 EDRcHRvGQtkpVtV~rLItk~TI 890 (941)
T KOG0389|consen 867 EDRCHRVGQTKPVTVYRLITKSTI 890 (941)
T ss_pred HHHHHhhCCcceeEEEEEEecCcH
Confidence 99999999 556788889998754
No 110
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=1.8e-22 Score=223.97 Aligned_cols=140 Identities=21% Similarity=0.264 Sum_probs=119.2
Q ss_pred ccccHHHHHHhccCC-CCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcc
Q 006824 453 DAEKLPWLLEKLPGM-IDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAA 531 (630)
Q Consensus 453 ~~~k~~~l~~~l~~~-~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~ 531 (630)
...|+..++..+... ....++||||+|+..++.|+..|...|+++.+||+ .+.+|+..+..|..+...|+|||++++
T Consensus 580 ~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAG 657 (1025)
T PRK12900 580 RREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAG 657 (1025)
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcC
Confidence 446788888887543 23569999999999999999999999999999997 688999999999999999999999999
Q ss_pred cCCCCC---Ccc-----EEEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEeccccHHHH----HHHHHHHHHcCC
Q 006824 532 RGLDIK---SIK-----SVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFA----GELVNSLIAAGQ 595 (630)
Q Consensus 532 ~Gldi~---~v~-----~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~~~----~~l~~~l~~~~~ 595 (630)
||+||+ +|. +||++..|.+...|.|++||+||.| .+|.+++|++..|.-+- .++.+.+...+.
T Consensus 658 RGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqG-dpGsS~ffvSleD~Lmr~f~~~~i~~~~~~~~~ 732 (1025)
T PRK12900 658 RGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQG-DPGESVFYVSLEDELMRLFGSDRVISVMDRLGH 732 (1025)
T ss_pred CCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCC-CCcceEEEechhHHHHHhhCcHHHHHHHHHcCC
Confidence 999999 554 4489999999999999999999999 68999999999875421 256666655554
No 111
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.90 E-value=2.7e-22 Score=227.82 Aligned_cols=323 Identities=19% Similarity=0.236 Sum_probs=214.3
Q ss_pred CCcHHHHHHHHHHHcC---C-CEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHh
Q 006824 247 KPTSIQCQALPIILSG---R-DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (630)
Q Consensus 247 ~~~~~Q~~~i~~il~g---~-d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 322 (630)
.+++.|..++..+++. . .+++.||||.|||.+.+.+++...... ....++++++.|++.+++++++.++++.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~----~~~~~r~i~vlP~~t~ie~~~~r~~~~~ 270 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK----IKLKSRVIYVLPFRTIIEDMYRRAKEIF 270 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc----ccccceEEEEccHHHHHHHHHHHHHhhh
Confidence 3478999999888744 4 789999999999999888888776542 2257889999999999999999999887
Q ss_pred hhcCceEEEEECCCChHHHHHHH---------------HcCCcEEEeChHHHHHHHHccc-cc-c--CceeEEEecchhh
Q 006824 323 KSHGIRVSAVYGGMSKLDQFKEL---------------KAGCEIVIATPGRLIDMLKMKA-LT-M--SRVTYLVLDEADR 383 (630)
Q Consensus 323 ~~~~~~~~~~~gg~~~~~~~~~l---------------~~~~dIiv~Tp~~L~~~l~~~~-~~-l--~~i~~lVvDEah~ 383 (630)
...+......+|..... -.... .....++++||..+........ .. + -..+++|+||+|.
T Consensus 271 ~~~~~~~~~~h~~~~~~-~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~ 349 (733)
T COG1203 271 GLFSVIGKSLHSSSKEP-LLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHL 349 (733)
T ss_pred cccccccccccccccch-hhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHh
Confidence 64433322122222211 11110 0114455666655544222111 11 1 2357899999999
Q ss_pred hhcCCcHHHHHHHHhhc-CCCCcEEEEeecccHHHHHHHHHHcCCCeEEEEccccc---ccccceEEEEEcCCccccHHH
Q 006824 384 MFDLGFEPQIRSIVGQI-RPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGM---ANEDITQVVHVIPSDAEKLPW 459 (630)
Q Consensus 384 ~~~~~~~~~v~~i~~~l-~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~---~~~~i~q~~~~~~~~~~k~~~ 459 (630)
+.+......+..++..+ .....+|++|||+|+.....+...+.+...+....... ....+.+. ............
T Consensus 350 ~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~-~~~~~~~~~~~~ 428 (733)
T COG1203 350 YADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRK-ERVDVEDGPQEE 428 (733)
T ss_pred hcccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccc-cchhhhhhhhHh
Confidence 87663344444444443 35678999999999999988888877655444321100 00001110 000000000011
Q ss_pred HHHhcc-CCCCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhh----cCCceEEEEcCCcccCC
Q 006824 460 LLEKLP-GMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFK----SGVYHVLIATDVAARGL 534 (630)
Q Consensus 460 l~~~l~-~~~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~----~g~~~VLvaT~~~~~Gl 534 (630)
+..... .....++++|.|||+..|.+++..|+..+.++..+|+.+...+|.+.+..+. .+...|+|||++++.|+
T Consensus 429 ~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagv 508 (733)
T COG1203 429 LIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGV 508 (733)
T ss_pred hhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEe
Confidence 222222 2234578999999999999999999998888999999999999998888654 46788999999999999
Q ss_pred CCCCccEEEEeCCCCCHHHHHHHhhhcccCCC-CCeEEEEEeccc
Q 006824 535 DIKSIKSVVNFDIARDMDMHVHRIGRTGRAGD-KDGTAYTLVTQK 578 (630)
Q Consensus 535 di~~v~~VI~~~~p~~~~~y~QriGR~gR~g~-~~g~~~~l~~~~ 578 (630)
||. .+.+| .-+..+...+||+||++|.|. ..|.++.+....
T Consensus 509 Did-fd~mI--Te~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~ 550 (733)
T COG1203 509 DID-FDVLI--TELAPIDSLIQRAGRVNRHGKKENGKIYVYNDEE 550 (733)
T ss_pred ccc-cCeee--ecCCCHHHHHHHHHHHhhcccccCCceeEeeccc
Confidence 995 45444 335558899999999999993 356777666544
No 112
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.90 E-value=3.4e-22 Score=222.96 Aligned_cols=308 Identities=20% Similarity=0.262 Sum_probs=211.2
Q ss_pred HHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhh-hcCce
Q 006824 250 SIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK-SHGIR 328 (630)
Q Consensus 250 ~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~-~~~~~ 328 (630)
....+.+..+.+.+-++++|+||||||.+ +|.+..-.. -..+.++.+.-|.|-.|..+++.+..-.. ..|-.
T Consensus 53 ~~~~~i~~ai~~~~vvii~getGsGKTTq--lP~~lle~g-----~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~ 125 (845)
T COG1643 53 AVRDEILKAIEQNQVVIIVGETGSGKTTQ--LPQFLLEEG-----LGIAGKIGCTQPRRLAARSVAERVAEELGEKLGET 125 (845)
T ss_pred HHHHHHHHHHHhCCEEEEeCCCCCChHHH--HHHHHHhhh-----cccCCeEEecCchHHHHHHHHHHHHHHhCCCcCce
Confidence 34456667777888999999999999976 444332211 12345677888998777666655444332 22333
Q ss_pred EEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhh-hhcCCcH-HHHHHHHhhcCCCCcE
Q 006824 329 VSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR-MFDLGFE-PQIRSIVGQIRPDRQT 406 (630)
Q Consensus 329 ~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~-~~~~~~~-~~v~~i~~~l~~~~q~ 406 (630)
|.+..-..+. ......|-++|.|.|...+..+.. |+.+++|||||||. -++.++. -.+..++...+++.++
T Consensus 126 VGY~iRfe~~------~s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKi 198 (845)
T COG1643 126 VGYSIRFESK------VSPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKL 198 (845)
T ss_pred eeEEEEeecc------CCCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceE
Confidence 3333222221 122478999999999999876664 89999999999994 3333222 2345556667778999
Q ss_pred EEEeecccHHHHHHHHHHcC-CCeEEEEcccccccccceEEEEEcCCccc-cHHHHHHhccCC--CCCCCEEEEccchhh
Q 006824 407 LLFSATMPRKVEKLAREILS-DPVRVTVGEVGMANEDITQVVHVIPSDAE-KLPWLLEKLPGM--IDDGDVLVFASKKTT 482 (630)
Q Consensus 407 l~~SAT~~~~~~~l~~~~~~-~~~~i~~~~~~~~~~~i~q~~~~~~~~~~-k~~~l~~~l~~~--~~~~~iLIF~~s~~~ 482 (630)
|+||||+..+ + +..++. .|+...-+ ....+...+........ -...+...+... ...|.+|||.+...+
T Consensus 199 IimSATld~~--r-fs~~f~~apvi~i~G----R~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~E 271 (845)
T COG1643 199 IIMSATLDAE--R-FSAYFGNAPVIEIEG----RTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQRE 271 (845)
T ss_pred EEEecccCHH--H-HHHHcCCCCEEEecC----CccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHH
Confidence 9999999654 3 444555 45443322 22233333322222222 122222222221 247899999999999
Q ss_pred HHHHHHHHHh----CCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEEEEeCC-----------
Q 006824 483 VDEIESQLAQ----KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDI----------- 547 (630)
Q Consensus 483 ~~~l~~~L~~----~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~----------- 547 (630)
...+++.|.. ..+.+..+||.++..+..++++--..|+.+|++||++++.+|.|++++.||.-+.
T Consensus 272 I~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g 351 (845)
T COG1643 272 IERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTG 351 (845)
T ss_pred HHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccC
Confidence 9999999987 3478999999999999999887777787889999999999999999999996443
Q ss_pred -------CCCHHHHHHHhhhcccCCCCCeEEEEEeccccH
Q 006824 548 -------ARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (630)
Q Consensus 548 -------p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~ 580 (630)
|-|-....||.||+||.+ +|.||.+++..+.
T Consensus 352 ~~~L~~~~ISqAsA~QRaGRAGR~~--pGicyRLyse~~~ 389 (845)
T COG1643 352 LTRLETEPISKASADQRAGRAGRTG--PGICYRLYSEEDF 389 (845)
T ss_pred ceeeeEEEechhhhhhhccccccCC--CceEEEecCHHHH
Confidence 224556789999999998 8999999998654
No 113
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.90 E-value=2.4e-22 Score=221.34 Aligned_cols=325 Identities=21% Similarity=0.270 Sum_probs=216.9
Q ss_pred CCCcHHHHHHHHHHH---cC-CCEEEEeCCCChHHHHHHHHHHHHHhcCC-cccccCCCeEEEEcccHHHHHHHHHHHHH
Q 006824 246 EKPTSIQCQALPIIL---SG-RDIIGIAKTGSGKTAAFVLPMIVHIMDQP-ELQKEEGPIGVICAPTRELAHQIYLETKK 320 (630)
Q Consensus 246 ~~~~~~Q~~~i~~il---~g-~d~l~~a~TGsGKT~~~~l~~l~~~~~~~-~~~~~~~~~vLil~Ptr~La~Q~~~~~~~ 320 (630)
.+++.+|++++.|+. .+ =+.|+|..||.|||++.+-.+....+.++ ....-+....|||||. .|+--|..++.+
T Consensus 974 a~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~k 1052 (1549)
T KOG0392|consen 974 AKLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKK 1052 (1549)
T ss_pred HHHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHH
Confidence 357889999999864 33 38899999999999886554444444432 1112233348999995 788899999999
Q ss_pred HhhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCcHHHHHHHHhhc
Q 006824 321 FAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI 400 (630)
Q Consensus 321 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l 400 (630)
|+.. +++....|+-......+.-.+.++|||++|+.+..-+. .+.-..|.|+|+||-|-|-+. ...+....+.+
T Consensus 1053 f~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d--~l~~~~wNYcVLDEGHVikN~--ktkl~kavkqL 1126 (1549)
T KOG0392|consen 1053 FFPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVD--YLIKIDWNYCVLDEGHVIKNS--KTKLTKAVKQL 1126 (1549)
T ss_pred hcch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHH--HHHhcccceEEecCcceecch--HHHHHHHHHHH
Confidence 9885 67777777766665666666678999999988764332 122246789999999987654 33444445555
Q ss_pred CCCCcEEEEeeccc-HHHHHHHH---HH----------------------------------------------------
Q 006824 401 RPDRQTLLFSATMP-RKVEKLAR---EI---------------------------------------------------- 424 (630)
Q Consensus 401 ~~~~q~l~~SAT~~-~~~~~l~~---~~---------------------------------------------------- 424 (630)
+.+++ +++|+|+- +++.++.. .+
T Consensus 1127 ~a~hR-LILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LR 1205 (1549)
T KOG0392|consen 1127 RANHR-LILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLR 1205 (1549)
T ss_pred hhcce-EEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHH
Confidence 54443 56788862 11111100 00
Q ss_pred ------cCC-CeEEEEcc---------------------------cccccc-c-----ceEEE-----------EEcC--
Q 006824 425 ------LSD-PVRVTVGE---------------------------VGMANE-D-----ITQVV-----------HVIP-- 451 (630)
Q Consensus 425 ------~~~-~~~i~~~~---------------------------~~~~~~-~-----i~q~~-----------~~~~-- 451 (630)
+.+ |-.+.... .+.... . |.|.. .+..
T Consensus 1206 RlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~ 1285 (1549)
T KOG0392|consen 1206 RLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPV 1285 (1549)
T ss_pred HHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCC
Confidence 000 10000000 000000 0 00000 0000
Q ss_pred ---------------------CccccHHHHHHhccCCC---------------CCCCEEEEccchhhHHHHHHHHHhC--
Q 006824 452 ---------------------SDAEKLPWLLEKLPGMI---------------DDGDVLVFASKKTTVDEIESQLAQK-- 493 (630)
Q Consensus 452 ---------------------~~~~k~~~l~~~l~~~~---------------~~~~iLIF~~s~~~~~~l~~~L~~~-- 493 (630)
....|+..|-.+|.... ..+++||||+-+.+++.+.+-|.+.
T Consensus 1286 hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~m 1365 (1549)
T KOG0392|consen 1286 HPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYM 1365 (1549)
T ss_pred cchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhc
Confidence 01234445544443221 2357999999999999999998765
Q ss_pred -CCcEEEEeCCCCHHHHHHHHHHhhcC-CceEE-EEcCCcccCCCCCCccEEEEeCCCCCHHHHHHHhhhcccCCCCC-e
Q 006824 494 -GFKAAALHGDKDQASRMEILQKFKSG-VYHVL-IATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKD-G 569 (630)
Q Consensus 494 -~~~~~~ihg~~~~~~r~~~~~~F~~g-~~~VL-vaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~QriGR~gR~g~~~-g 569 (630)
.+....+.|..++.+|.++.+.|+++ .+.|| ++|.+++-|+|+.++++||+++-.|||-.-+|.+.|++|.|++. -
T Consensus 1366 psVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvV 1445 (1549)
T KOG0392|consen 1366 PSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVV 1445 (1549)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceee
Confidence 34456899999999999999999998 67776 56799999999999999999999999999999999999999654 4
Q ss_pred EEEEEeccc
Q 006824 570 TAYTLVTQK 578 (630)
Q Consensus 570 ~~~~l~~~~ 578 (630)
.+|.|++..
T Consensus 1446 NVyRlItrG 1454 (1549)
T KOG0392|consen 1446 NVYRLITRG 1454 (1549)
T ss_pred eeeeehhcc
Confidence 577888865
No 114
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.88 E-value=2.8e-21 Score=203.87 Aligned_cols=308 Identities=20% Similarity=0.261 Sum_probs=206.1
Q ss_pred HHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHH-HHhhhcCce
Q 006824 250 SIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETK-KFAKSHGIR 328 (630)
Q Consensus 250 ~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~-~~~~~~~~~ 328 (630)
.+-.+.+..+-.++-+|+.|+||||||.+ +|-+.. .-. -....++.+.-|.|-.|..++.... +....+|-.
T Consensus 54 ~~r~~il~~ve~nqvlIviGeTGsGKSTQ--ipQyL~--eaG---~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~ 126 (674)
T KOG0922|consen 54 KYRDQILYAVEDNQVLIVIGETGSGKSTQ--IPQYLA--EAG---FASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEE 126 (674)
T ss_pred HHHHHHHHHHHHCCEEEEEcCCCCCcccc--HhHHHH--hcc---cccCCcEEeecCchHHHHHHHHHHHHHhCCCcCce
Confidence 34456777788889999999999999976 443222 111 1112337788899988877765443 333333444
Q ss_pred EEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCcHHHHHHHHhhc---CCCCc
Q 006824 329 VSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI---RPDRQ 405 (630)
Q Consensus 329 ~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l---~~~~q 405 (630)
|.....-.+.. .....|.+.|-|.|++-+..+. .|+.+++|||||||.=. . ..+.+..+++.+ +++.+
T Consensus 127 VGY~IRFed~t------s~~TrikymTDG~LLRE~l~Dp-~LskYsvIIlDEAHERs-l-~TDiLlGlLKki~~~R~~Lk 197 (674)
T KOG0922|consen 127 VGYTIRFEDST------SKDTRIKYMTDGMLLREILKDP-LLSKYSVIILDEAHERS-L-HTDILLGLLKKILKKRPDLK 197 (674)
T ss_pred eeeEEEecccC------CCceeEEEecchHHHHHHhcCC-ccccccEEEEechhhhh-h-HHHHHHHHHHHHHhcCCCce
Confidence 43322211111 1126799999999998776554 48999999999999511 0 122333333322 46678
Q ss_pred EEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCccccHHHHHH--hccCCCCCCCEEEEccchhhH
Q 006824 406 TLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLE--KLPGMIDDGDVLVFASKKTTV 483 (630)
Q Consensus 406 ~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~--~l~~~~~~~~iLIF~~s~~~~ 483 (630)
+|++|||+..+ .+..|+.+...+.+.. ....+...+..-+..+.--..+.. .+....+.|.+|||.+..++.
T Consensus 198 lIimSATlda~---kfS~yF~~a~i~~i~G---R~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEI 271 (674)
T KOG0922|consen 198 LIIMSATLDAE---KFSEYFNNAPILTIPG---RTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEI 271 (674)
T ss_pred EEEEeeeecHH---HHHHHhcCCceEeecC---CCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHH
Confidence 99999999643 5556666533333322 223344444333222211111211 122235678999999999999
Q ss_pred HHHHHHHHhC----C----CcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEEEE--------eCC
Q 006824 484 DEIESQLAQK----G----FKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN--------FDI 547 (630)
Q Consensus 484 ~~l~~~L~~~----~----~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI~--------~~~ 547 (630)
+.++..|.+. + .-+..+||.++.++..++...-..|..+|+++|++++..+.|+++..||. |++
T Consensus 272 e~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p 351 (674)
T KOG0922|consen 272 EAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNP 351 (674)
T ss_pred HHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeecc
Confidence 9999998764 1 12578999999999999988888899999999999999999999999996 333
Q ss_pred ----------CCCHHHHHHHhhhcccCCCCCeEEEEEeccccHH
Q 006824 548 ----------ARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEAR 581 (630)
Q Consensus 548 ----------p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~ 581 (630)
|-|-..-.||.||+||.| +|.||.+++.++..
T Consensus 352 ~~g~~~L~v~~ISkasA~QRaGRAGRt~--pGkcyRLYte~~~~ 393 (674)
T KOG0922|consen 352 RTGLDSLIVVPISKASANQRAGRAGRTG--PGKCYRLYTESAYD 393 (674)
T ss_pred ccCccceeEEechHHHHhhhcccCCCCC--CceEEEeeeHHHHh
Confidence 335667789999999998 89999999987654
No 115
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.88 E-value=5.2e-20 Score=213.45 Aligned_cols=346 Identities=20% Similarity=0.223 Sum_probs=214.1
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHH----HHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEccc
Q 006824 232 FSTQLMHAISKQGYEKPTSIQCQALP----IILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPT 307 (630)
Q Consensus 232 l~~~l~~~l~~~~~~~~~~~Q~~~i~----~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Pt 307 (630)
+++.+...+...||. ++|.|.+.+. .+..++++++.||||+|||++|++|++.+.. ++.+++|.+||
T Consensus 231 ~~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~--------~~~~vvi~t~t 301 (850)
T TIGR01407 231 LSSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI--------TEKPVVISTNT 301 (850)
T ss_pred ccHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc--------CCCeEEEEeCc
Confidence 334566677777876 8999998666 5557899999999999999999999988764 24579999999
Q ss_pred HHHHHHHHH-HHHHHhhhcC--ceEEEEECCCChH-----HH--------------------------------------
Q 006824 308 RELAHQIYL-ETKKFAKSHG--IRVSAVYGGMSKL-----DQ-------------------------------------- 341 (630)
Q Consensus 308 r~La~Q~~~-~~~~~~~~~~--~~~~~~~gg~~~~-----~~-------------------------------------- 341 (630)
++|..|+.. .+..+.+.++ ++++.+.|+.+.- .+
T Consensus 302 ~~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~ 381 (850)
T TIGR01407 302 KVLQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGG 381 (850)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCc
Confidence 999999975 5666655444 6666666553210 00
Q ss_pred ----H------------------------HHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCC-----
Q 006824 342 ----F------------------------KELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG----- 388 (630)
Q Consensus 342 ----~------------------------~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~----- 388 (630)
+ +.....++||||....|...+......+....++||||||++.+..
T Consensus 382 ~~~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d~a~~~~~ 461 (850)
T TIGR01407 382 NKMFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPDIAENQLQ 461 (850)
T ss_pred chhhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHHHHHHHhc
Confidence 0 0011228999999998887664443335667899999999974310
Q ss_pred --c-----HHH----------------------------------------------------------------HHHHH
Q 006824 389 --F-----EPQ----------------------------------------------------------------IRSIV 397 (630)
Q Consensus 389 --~-----~~~----------------------------------------------------------------v~~i~ 397 (630)
+ ... +...+
T Consensus 462 ~~ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~~ 541 (850)
T TIGR01407 462 EELDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKFD 541 (850)
T ss_pred ceeCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 0 000 00000
Q ss_pred hh-----------c-------------------------------------CCCCcEEEEeecccHH-HHHHHHHHcCCC
Q 006824 398 GQ-----------I-------------------------------------RPDRQTLLFSATMPRK-VEKLAREILSDP 428 (630)
Q Consensus 398 ~~-----------l-------------------------------------~~~~q~l~~SAT~~~~-~~~l~~~~~~~~ 428 (630)
.. + +....+|++|||++.. -.......++-+
T Consensus 542 ~~~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~ 621 (850)
T TIGR01407 542 LALKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLT 621 (850)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCCC
Confidence 00 0 0124688999998632 122333333321
Q ss_pred -e-EEEEcccccccccceEEEEEcCC----c-----cccHHHHHHhccCC--CCCCCEEEEccchhhHHHHHHHHHh---
Q 006824 429 -V-RVTVGEVGMANEDITQVVHVIPS----D-----AEKLPWLLEKLPGM--IDDGDVLVFASKKTTVDEIESQLAQ--- 492 (630)
Q Consensus 429 -~-~i~~~~~~~~~~~i~q~~~~~~~----~-----~~k~~~l~~~l~~~--~~~~~iLIF~~s~~~~~~l~~~L~~--- 492 (630)
. ........... ..+...+++. . ..-...+...+... ...|++|||++|+...+.++..|..
T Consensus 622 ~~~~~~~~~spf~~--~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~ 699 (850)
T TIGR01407 622 DVHFNTIEPTPLNY--AENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPE 699 (850)
T ss_pred ccccceecCCCCCH--HHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhcc
Confidence 1 11111111110 1111112111 0 11112233333222 1357899999999999999999975
Q ss_pred -CCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCcc--EEEEeCCCCC----H--------------
Q 006824 493 -KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIK--SVVNFDIARD----M-------------- 551 (630)
Q Consensus 493 -~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~--~VI~~~~p~~----~-------------- 551 (630)
.++. ++..+.. ..|..+++.|++|+..||++|+.+.+|+|+++.. .||+..+|.. |
T Consensus 700 ~~~~~--~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~ 776 (850)
T TIGR01407 700 FEGYE--VLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGK 776 (850)
T ss_pred ccCce--EEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcC
Confidence 2333 3333333 5788999999999999999999999999999855 6777776642 1
Q ss_pred ------------HHHHHHhhhcccCCCCCeEEEEEecc-ccHHHHHHHHHHHH
Q 006824 552 ------------DMHVHRIGRTGRAGDKDGTAYTLVTQ-KEARFAGELVNSLI 591 (630)
Q Consensus 552 ------------~~y~QriGR~gR~g~~~g~~~~l~~~-~d~~~~~~l~~~l~ 591 (630)
..+.|.+||+-|..+..|.++++-.. ....+-..+.+.|.
T Consensus 777 ~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R~~~~~Yg~~~~~sLp 829 (850)
T TIGR01407 777 NPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRRLVGKRYGKRFEKSLP 829 (850)
T ss_pred CchHHhhHHHHHHHHHHhhccccccCCceEEEEEEccccccchHHHHHHHhCC
Confidence 22359999999988556655554332 23445566666653
No 116
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.87 E-value=4.1e-20 Score=205.51 Aligned_cols=131 Identities=22% Similarity=0.391 Sum_probs=115.9
Q ss_pred cccHHHHHHhccCCC-CCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCccc
Q 006824 454 AEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAAR 532 (630)
Q Consensus 454 ~~k~~~l~~~l~~~~-~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~ 532 (630)
..++..|+..+.... .+.++||||+++..++.++.+|...|+.+..+||++++.+|.+++..|+.|++.|||||+.+++
T Consensus 425 ~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~r 504 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLRE 504 (655)
T ss_pred cchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcC
Confidence 356677777776653 3558999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccEEEEeC-----CCCCHHHHHHHhhhcccCCCCCeEEEEEeccccHHHHHHH
Q 006824 533 GLDIKSIKSVVNFD-----IARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGEL 586 (630)
Q Consensus 533 Gldi~~v~~VI~~~-----~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~~~~~l 586 (630)
|+|+|++++||+++ .|.+...|+||+||+||.. .|.+++|++..+......|
T Consensus 505 GfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~--~G~vi~~~~~~~~~~~~ai 561 (655)
T TIGR00631 505 GLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV--NGKVIMYADKITDSMQKAI 561 (655)
T ss_pred CeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCC--CCEEEEEEcCCCHHHHHHH
Confidence 99999999999988 7999999999999999985 6999999997654443333
No 117
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.87 E-value=2.7e-20 Score=201.41 Aligned_cols=315 Identities=20% Similarity=0.218 Sum_probs=219.5
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcC
Q 006824 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (630)
Q Consensus 247 ~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~ 326 (630)
.|++.|.-+.-.+++|+ |..+.||+|||++..+|++...+. |..|.|++|+..||.|-++++..++..+|
T Consensus 78 r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~--------G~~VhvvT~NdyLA~RDae~m~~ly~~LG 147 (764)
T PRK12326 78 RPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQ--------GRRVHVITVNDYLARRDAEWMGPLYEALG 147 (764)
T ss_pred CcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHc--------CCCeEEEcCCHHHHHHHHHHHHHHHHhcC
Confidence 57888988888888774 789999999999999998877654 66799999999999999999999999999
Q ss_pred ceEEEEECCCChHHHHHHHHcCCcEEEeChHHHH-HHHHc------cccccCceeEEEecchhhhhcC------------
Q 006824 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLI-DMLKM------KALTMSRVTYLVLDEADRMFDL------------ 387 (630)
Q Consensus 327 ~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~-~~l~~------~~~~l~~i~~lVvDEah~~~~~------------ 387 (630)
+++.++.++.+..+. +... .|||+.+|..-|- ++|+. .....+.+.+.||||+|.|+-.
T Consensus 148 Lsvg~i~~~~~~~er-r~aY-~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiISg~~ 225 (764)
T PRK12326 148 LTVGWITEESTPEER-RAAY-ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLAGST 225 (764)
T ss_pred CEEEEECCCCCHHHH-HHHH-cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceeeeCCC
Confidence 999999887765543 3333 4999999987653 23322 2223567899999999986310
Q ss_pred ---CcHHHHHHHHhhcCCC-------------------------------------------------------------
Q 006824 388 ---GFEPQIRSIVGQIRPD------------------------------------------------------------- 403 (630)
Q Consensus 388 ---~~~~~v~~i~~~l~~~------------------------------------------------------------- 403 (630)
.....+..+...+...
T Consensus 226 ~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~dYi 305 (764)
T PRK12326 226 PGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDVHYI 305 (764)
T ss_pred cchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCCcEE
Confidence 0111111222222110
Q ss_pred ---------------------------------------------------------CcEEEEeecccHHHHHHHHHHcC
Q 006824 404 ---------------------------------------------------------RQTLLFSATMPRKVEKLAREILS 426 (630)
Q Consensus 404 ---------------------------------------------------------~q~l~~SAT~~~~~~~l~~~~~~ 426 (630)
..+.+||+|.......+...|--
T Consensus 306 V~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY~l 385 (764)
T PRK12326 306 VRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFYDL 385 (764)
T ss_pred EECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHHHHhCC
Confidence 24455555554444433333322
Q ss_pred CCeEEEEcccccccccceEEEEEcCCccccHHHHHHhccCC-CCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCC
Q 006824 427 DPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGM-IDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKD 505 (630)
Q Consensus 427 ~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~-~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~ 505 (630)
+ +.+.+...+ .......-.++.....|+..+++.+... ..+.||||.+.+....+.++..|.+.|++..+++..-.
T Consensus 386 ~-Vv~IPtnkp--~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~ 462 (764)
T PRK12326 386 G-VSVIPPNKP--NIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKND 462 (764)
T ss_pred c-EEECCCCCC--ceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCch
Confidence 2 111111111 1111111122334557888888877655 34558999999999999999999999999999998644
Q ss_pred HHHHHHHHHHhhcCC-ceEEEEcCCcccCCCCC---------------CccEEEEeCCCCCHHHHHHHhhhcccCCCCCe
Q 006824 506 QASRMEILQKFKSGV-YHVLIATDVAARGLDIK---------------SIKSVVNFDIARDMDMHVHRIGRTGRAGDKDG 569 (630)
Q Consensus 506 ~~~r~~~~~~F~~g~-~~VLvaT~~~~~Gldi~---------------~v~~VI~~~~p~~~~~y~QriGR~gR~g~~~g 569 (630)
. ++.-+- -..|+ ..|.|||++++||-||. +--+||....+.|...-.|..||+||.| .+|
T Consensus 463 ~--~EA~II-a~AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQG-DpG 538 (764)
T PRK12326 463 A--EEARII-AEAGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQG-DPG 538 (764)
T ss_pred H--hHHHHH-HhcCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCC-CCC
Confidence 3 322222 23454 56999999999999997 3348999999999999999999999999 689
Q ss_pred EEEEEeccccH
Q 006824 570 TAYTLVTQKEA 580 (630)
Q Consensus 570 ~~~~l~~~~d~ 580 (630)
.+.+|++-+|.
T Consensus 539 ss~f~lSleDd 549 (764)
T PRK12326 539 SSVFFVSLEDD 549 (764)
T ss_pred ceeEEEEcchh
Confidence 99999998774
No 118
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.86 E-value=3.4e-20 Score=202.82 Aligned_cols=322 Identities=17% Similarity=0.207 Sum_probs=207.2
Q ss_pred CCcHHHHHHHHHHH---cC-------CCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHH
Q 006824 247 KPTSIQCQALPIIL---SG-------RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYL 316 (630)
Q Consensus 247 ~~~~~Q~~~i~~il---~g-------~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~ 316 (630)
.++|+|++++..+. .| ..+|+...+|+|||++ +++++..++.+.+....--.+.|||+|. .|+..|++
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq-~IsflwtlLrq~P~~~~~~~k~lVV~P~-sLv~nWkk 315 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQ-CISFIWTLLRQFPQAKPLINKPLVVAPS-SLVNNWKK 315 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHH-HHHHHHHHHHhCcCccccccccEEEccH-HHHHHHHH
Confidence 58899999998865 22 3578888999999987 4455555554432212223568999995 78899999
Q ss_pred HHHHHhhhcCceEEEEECCCCh-HH---HHHHH---HcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCc
Q 006824 317 ETKKFAKSHGIRVSAVYGGMSK-LD---QFKEL---KAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGF 389 (630)
Q Consensus 317 ~~~~~~~~~~~~~~~~~gg~~~-~~---~~~~l---~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~ 389 (630)
++.+|.....+....+++..+. +. .+..+ .-..-|++.+++.+.+... ...+..++++|+||.|++-+.
T Consensus 316 EF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~--~il~~~~glLVcDEGHrlkN~-- 391 (776)
T KOG0390|consen 316 EFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCR--KILLIRPGLLVCDEGHRLKNS-- 391 (776)
T ss_pred HHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHH--HHhcCCCCeEEECCCCCccch--
Confidence 9999988666777778887664 11 11111 1125688899999876554 445668999999999997654
Q ss_pred HHHHHHHHhhcCCCCcEEEEeeccc-HHHHHH------------------------------------------------
Q 006824 390 EPQIRSIVGQIRPDRQTLLFSATMP-RKVEKL------------------------------------------------ 420 (630)
Q Consensus 390 ~~~v~~i~~~l~~~~q~l~~SAT~~-~~~~~l------------------------------------------------ 420 (630)
...+...+..+...+ -|++|+|+- +++.++
T Consensus 392 ~s~~~kaL~~l~t~r-RVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~eL 470 (776)
T KOG0390|consen 392 DSLTLKALSSLKTPR-RVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQEL 470 (776)
T ss_pred hhHHHHHHHhcCCCc-eEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHHH
Confidence 445556666665444 466788862 111111
Q ss_pred ---HHHHcCCCeEEEEcccccccccceEEEEEcC----------------------------------------------
Q 006824 421 ---AREILSDPVRVTVGEVGMANEDITQVVHVIP---------------------------------------------- 451 (630)
Q Consensus 421 ---~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~---------------------------------------------- 451 (630)
...++..... .......+.....+.++.
T Consensus 471 ~~~t~~fi~rrt~---~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~ 547 (776)
T KOG0390|consen 471 RELTNKFILRRTG---DILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCE 547 (776)
T ss_pred HHHHHhheeeccc---chhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhcccc
Confidence 1111111000 000000000000000000
Q ss_pred ---------------------------CccccHHHHHHhccCCCC--CCCEEEEccchhhHHHHHHHHHhCCCcEEEEeC
Q 006824 452 ---------------------------SDAEKLPWLLEKLPGMID--DGDVLVFASKKTTVDEIESQLAQKGFKAAALHG 502 (630)
Q Consensus 452 ---------------------------~~~~k~~~l~~~l~~~~~--~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg 502 (630)
....|+..|+.++..... ..++.+..|.+...+.+...++-.|+.+..+||
T Consensus 548 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG 627 (776)
T KOG0390|consen 548 KTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDG 627 (776)
T ss_pred cccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcC
Confidence 011223333333311111 123444455556666666666667999999999
Q ss_pred CCCHHHHHHHHHHhhcCC---ceEEEEcCCcccCCCCCCccEEEEeCCCCCHHHHHHHhhhcccCCCC-CeEEEEEeccc
Q 006824 503 DKDQASRMEILQKFKSGV---YHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDK-DGTAYTLVTQK 578 (630)
Q Consensus 503 ~~~~~~r~~~~~~F~~g~---~~VLvaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~QriGR~gR~g~~-~g~~~~l~~~~ 578 (630)
.++..+|..+++.|++.. .-+|++|.+++.||++-+++.||+||++|||+.-.|.++|+.|.|++ ...+|.|++..
T Consensus 628 ~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatG 707 (776)
T KOG0390|consen 628 KTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATG 707 (776)
T ss_pred CCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCC
Confidence 999999999999998743 33677889999999999999999999999999999999999999955 45667777653
No 119
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.86 E-value=1e-19 Score=199.08 Aligned_cols=285 Identities=26% Similarity=0.391 Sum_probs=200.4
Q ss_pred HHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHH
Q 006824 238 HAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLE 317 (630)
Q Consensus 238 ~~l~~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~ 317 (630)
+.+.+.-...|...|+--..-++.|+..-+.||||.|||.- .+.+-..+. ..|.+++||+||+.|+.|+++.
T Consensus 73 ~fF~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTf-g~~~sl~~a-------~kgkr~yii~PT~~Lv~Q~~~k 144 (1187)
T COG1110 73 EFFKKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTF-GLLMSLYLA-------KKGKRVYIIVPTTTLVRQVYER 144 (1187)
T ss_pred HHHHHhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhHH-HHHHHHHHH-------hcCCeEEEEecCHHHHHHHHHH
Confidence 33444433489999999999999999999999999999963 333322322 2368899999999999999999
Q ss_pred HHHHhhhcC-ceEEEEECCC-Ch---HHHHHHHHc-CCcEEEeChHHHHHHHHccccccC--ceeEEEecchhhhhcC--
Q 006824 318 TKKFAKSHG-IRVSAVYGGM-SK---LDQFKELKA-GCEIVIATPGRLIDMLKMKALTMS--RVTYLVLDEADRMFDL-- 387 (630)
Q Consensus 318 ~~~~~~~~~-~~~~~~~gg~-~~---~~~~~~l~~-~~dIiv~Tp~~L~~~l~~~~~~l~--~i~~lVvDEah~~~~~-- 387 (630)
+.+++...+ ..+..+|++. +. .+....+.+ +.||+|+|.+-|..... .|. ++++|++|.+|.++-.
T Consensus 145 l~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e----~L~~~kFdfifVDDVDA~Lkask 220 (1187)
T COG1110 145 LKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFE----ELSKLKFDFIFVDDVDAILKASK 220 (1187)
T ss_pred HHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHH----HhcccCCCEEEEccHHHHHhccc
Confidence 999987666 5555545554 22 223344444 58999999876665443 333 6899999999987532
Q ss_pred ---------CcHHH-------HHHHHhhc------------------------CCCCcEEEEeecccHH--HHHHHHHHc
Q 006824 388 ---------GFEPQ-------IRSIVGQI------------------------RPDRQTLLFSATMPRK--VEKLAREIL 425 (630)
Q Consensus 388 ---------~~~~~-------v~~i~~~l------------------------~~~~q~l~~SAT~~~~--~~~l~~~~~ 425 (630)
||... +..+...+ .+..++++.|||..+. -..+++.++
T Consensus 221 NvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLl 300 (1187)
T COG1110 221 NVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELL 300 (1187)
T ss_pred cHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHh
Confidence 22221 11111111 1245899999997543 234566666
Q ss_pred CCCeEEEEcccccccccceEEEEEcCCccccHHHHHHhccCCCCCCCEEEEccc---hhhHHHHHHHHHhCCCcEEEEeC
Q 006824 426 SDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASK---KTTVDEIESQLAQKGFKAAALHG 502 (630)
Q Consensus 426 ~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~~~~~iLIF~~s---~~~~~~l~~~L~~~~~~~~~ihg 502 (630)
+ +.++.......+|...+... .-...++++++.+ +.+.|||++. ...++.++++|+..|+++..+|.
T Consensus 301 g----FevG~~~~~LRNIvD~y~~~----~~~e~~~elvk~l--G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a 370 (1187)
T COG1110 301 G----FEVGSGGEGLRNIVDIYVES----ESLEKVVELVKKL--GDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHA 370 (1187)
T ss_pred C----CccCccchhhhheeeeeccC----ccHHHHHHHHHHh--CCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeec
Confidence 5 23344334444555544433 3344445555443 4478999999 99999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhcCCceEEEEc----CCcccCCCCCC-ccEEEEeCCCC
Q 006824 503 DKDQASRMEILQKFKSGVYHVLIAT----DVAARGLDIKS-IKSVVNFDIAR 549 (630)
Q Consensus 503 ~~~~~~r~~~~~~F~~g~~~VLvaT----~~~~~Gldi~~-v~~VI~~~~p~ 549 (630)
+ ....++.|..|+++|||+. .++-||+|+|. ++.+|+|+.|.
T Consensus 371 ~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk 417 (1187)
T COG1110 371 E-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPK 417 (1187)
T ss_pred c-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCc
Confidence 4 2678999999999999876 46779999997 89999999994
No 120
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.86 E-value=6.4e-20 Score=200.34 Aligned_cols=126 Identities=21% Similarity=0.396 Sum_probs=108.2
Q ss_pred ccHHHHHHhccCCC-CCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCC--ceEEEEcCCcc
Q 006824 455 EKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGV--YHVLIATDVAA 531 (630)
Q Consensus 455 ~k~~~l~~~l~~~~-~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~--~~VLvaT~~~~ 531 (630)
.|+..|.-+|+++. .+.++|||+....+.+-|..+|.-.|+.++.|.|..+.++|...+++|+... +.++++|...+
T Consensus 1260 GKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSgg 1339 (1958)
T KOG0391|consen 1260 GKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGG 1339 (1958)
T ss_pred chHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCc
Confidence 45555555555443 3568999999999999999999999999999999999999999999999864 56889999999
Q ss_pred cCCCCCCccEEEEeCCCCCHHHHHHHhhhcccCC-CCCeEEEEEeccccH
Q 006824 532 RGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAG-DKDGTAYTLVTQKEA 580 (630)
Q Consensus 532 ~Gldi~~v~~VI~~~~p~~~~~y~QriGR~gR~g-~~~g~~~~l~~~~d~ 580 (630)
.|||+.++++||+||..||+..-.|.-.|++|+| .+.-+.|.|++..-.
T Consensus 1340 vGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TI 1389 (1958)
T KOG0391|consen 1340 VGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTI 1389 (1958)
T ss_pred cccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccchH
Confidence 9999999999999999999999999889999988 445678888887643
No 121
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.86 E-value=1.2e-19 Score=204.22 Aligned_cols=312 Identities=17% Similarity=0.154 Sum_probs=187.4
Q ss_pred CcHHHHHHHHHHH----c------CCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHH
Q 006824 248 PTSIQCQALPIIL----S------GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLE 317 (630)
Q Consensus 248 ~~~~Q~~~i~~il----~------g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~ 317 (630)
++++|..|+..+. + .+..+++.+||||||++.+..+...+ . ....+++|||+|+.+|..|+.+.
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~-~-----~~~~~~vl~lvdR~~L~~Q~~~~ 312 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKAL-E-----LLKNPKVFFVVDRRELDYQLMKE 312 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHH-h-----hcCCCeEEEEECcHHHHHHHHHH
Confidence 7889999997764 2 25799999999999987554443332 2 23468899999999999999999
Q ss_pred HHHHhhhcCceEEEEECCCChHHHHHHHHc-CCcEEEeChHHHHHHHHcc--ccccCc-eeEEEecchhhhhcCCcHHHH
Q 006824 318 TKKFAKSHGIRVSAVYGGMSKLDQFKELKA-GCEIVIATPGRLIDMLKMK--ALTMSR-VTYLVLDEADRMFDLGFEPQI 393 (630)
Q Consensus 318 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~-~~dIiv~Tp~~L~~~l~~~--~~~l~~-i~~lVvDEah~~~~~~~~~~v 393 (630)
+..+... . ..+..+.......+.. ...|+|+|.+.|...+... ...... --+||+||||+.... .+
T Consensus 313 f~~~~~~----~--~~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~----~~ 382 (667)
T TIGR00348 313 FQSLQKD----C--AERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYG----EL 382 (667)
T ss_pred HHhhCCC----C--CcccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccch----HH
Confidence 9988531 1 1111122222223332 3689999999998644321 111111 128999999995422 23
Q ss_pred HHHHhhcCCCCcEEEEeecccHHHH----HHHHHHcCCCeEEEEcccccccccceEEEEE--------cCC---------
Q 006824 394 RSIVGQIRPDRQTLLFSATMPRKVE----KLAREILSDPVRVTVGEVGMANEDITQVVHV--------IPS--------- 452 (630)
Q Consensus 394 ~~i~~~l~~~~q~l~~SAT~~~~~~----~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~--------~~~--------- 452 (630)
...+...-++...++|||||-.... ......+++++. .+.-......+....+.+ +..
T Consensus 383 ~~~l~~~~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~-~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~ 461 (667)
T TIGR00348 383 AKNLKKALKNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLH-RYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDE 461 (667)
T ss_pred HHHHHhhCCCCcEEEEeCCCcccccccccccccCCCCCeEE-EeeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHH
Confidence 3333222356789999999954211 111111112211 111100000110000000 000
Q ss_pred -----------------------------ccccHHH----HHHhccCCC--CCCCEEEEccchhhHHHHHHHHHhC----
Q 006824 453 -----------------------------DAEKLPW----LLEKLPGMI--DDGDVLVFASKKTTVDEIESQLAQK---- 493 (630)
Q Consensus 453 -----------------------------~~~k~~~----l~~~l~~~~--~~~~iLIF~~s~~~~~~l~~~L~~~---- 493 (630)
....... +++...... ..++.+|||.++..|..+.+.|.+.
T Consensus 462 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~ 541 (667)
T TIGR00348 462 IFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEK 541 (667)
T ss_pred HHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccc
Confidence 0000011 111111111 2479999999999999999998664
Q ss_pred -CCcEEEEeCCCCHH---------------------HHHHHHHHhhc-CCceEEEEcCCcccCCCCCCccEEEEeCCCCC
Q 006824 494 -GFKAAALHGDKDQA---------------------SRMEILQKFKS-GVYHVLIATDVAARGLDIKSIKSVVNFDIARD 550 (630)
Q Consensus 494 -~~~~~~ihg~~~~~---------------------~r~~~~~~F~~-g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~~ 550 (630)
+.....+++..+.. ....+++.|++ +..+|||+++.+.+|+|.|.+.+++...+-.+
T Consensus 542 ~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk~ 621 (667)
T TIGR00348 542 FEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLKY 621 (667)
T ss_pred cCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEeccccc
Confidence 24556666654332 22478889976 67899999999999999999999999887776
Q ss_pred HHHHHHHhhhcccC-C--CCCeEEEEEecc
Q 006824 551 MDMHVHRIGRTGRA-G--DKDGTAYTLVTQ 577 (630)
Q Consensus 551 ~~~y~QriGR~gR~-g--~~~g~~~~l~~~ 577 (630)
. .++|++||+.|. + ...|.++-|+..
T Consensus 622 h-~LlQai~R~nR~~~~~K~~g~IvDy~g~ 650 (667)
T TIGR00348 622 H-GLLQAIARTNRIDGKDKTFGLIVDYRGL 650 (667)
T ss_pred c-HHHHHHHHhccccCCCCCCEEEEECcCh
Confidence 4 589999999994 3 223555555543
No 122
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.86 E-value=1.9e-20 Score=195.47 Aligned_cols=311 Identities=20% Similarity=0.274 Sum_probs=208.2
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcC
Q 006824 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (630)
Q Consensus 247 ~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~ 326 (630)
..+++-.+.+.++..++-+|+.|.||||||.+ +|-+.+--.. ...|.++-+.-|.|-.|..++..+.+- .|
T Consensus 265 PVy~ykdell~av~e~QVLiI~GeTGSGKTTQ--iPQyL~EaGy----tk~gk~IgcTQPRRVAAmSVAaRVA~E---Mg 335 (902)
T KOG0923|consen 265 PVYPYKDELLKAVKEHQVLIIVGETGSGKTTQ--IPQYLYEAGY----TKGGKKIGCTQPRRVAAMSVAARVAEE---MG 335 (902)
T ss_pred CchhhHHHHHHHHHhCcEEEEEcCCCCCcccc--ccHHHHhccc----ccCCceEeecCcchHHHHHHHHHHHHH---hC
Confidence 45677778888899999999999999999965 6654443211 123444677789998888776444332 23
Q ss_pred ceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhh-hhcCCcHHHHHHHHhhcCCCCc
Q 006824 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR-MFDLGFEPQIRSIVGQIRPDRQ 405 (630)
Q Consensus 327 ~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~-~~~~~~~~~v~~i~~~l~~~~q 405 (630)
.+...-+|..-+.+..- ....-|-++|-|+|+.-+.... .|.++++|||||||. -+..+..-.+-.-+..++|+..
T Consensus 336 vkLG~eVGYsIRFEdcT--SekTvlKYMTDGmLlREfL~ep-dLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdLK 412 (902)
T KOG0923|consen 336 VKLGHEVGYSIRFEDCT--SEKTVLKYMTDGMLLREFLSEP-DLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDLK 412 (902)
T ss_pred cccccccceEEEecccc--CcceeeeeecchhHHHHHhccc-cccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcce
Confidence 33322222222222111 1124578899999988665443 588999999999995 2222111112222345678999
Q ss_pred EEEEeecccHHHHHHHHHHcCC-CeEEEEcccccccccceEEEEEcCCccccHHHHHHhccC---CCCCCCEEEEccchh
Q 006824 406 TLLFSATMPRKVEKLAREILSD-PVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPG---MIDDGDVLVFASKKT 481 (630)
Q Consensus 406 ~l~~SAT~~~~~~~l~~~~~~~-~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~---~~~~~~iLIF~~s~~ 481 (630)
+++.|||+..+ -+..|+.+ |+....+. ...+...+...+. .+-+...+..+.+ ..+.|.||||..-..
T Consensus 413 llIsSAT~DAe---kFS~fFDdapIF~iPGR----RyPVdi~Yt~~PE-AdYldAai~tVlqIH~tqp~GDILVFltGQe 484 (902)
T KOG0923|consen 413 LLISSATMDAE---KFSAFFDDAPIFRIPGR----RYPVDIFYTKAPE-ADYLDAAIVTVLQIHLTQPLGDILVFLTGQE 484 (902)
T ss_pred EEeeccccCHH---HHHHhccCCcEEeccCc----ccceeeecccCCc-hhHHHHHHhhheeeEeccCCccEEEEeccHH
Confidence 99999999643 34555554 55444332 2233333333332 2233332222222 234688999999999
Q ss_pred hHHHHHHHHHhC---------CCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEEEEeCC-----
Q 006824 482 TVDEIESQLAQK---------GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDI----- 547 (630)
Q Consensus 482 ~~~~l~~~L~~~---------~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~----- 547 (630)
..+.....|... .+-++.||..++......+++---.|-.+|++||+++...|.|+++..||.-+.
T Consensus 485 EIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~ns 564 (902)
T KOG0923|consen 485 EIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNS 564 (902)
T ss_pred HHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccC
Confidence 988877777542 345889999999999999988778899999999999999999999999996333
Q ss_pred -------------CCCHHHHHHHhhhcccCCCCCeEEEEEecccc
Q 006824 548 -------------ARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKE 579 (630)
Q Consensus 548 -------------p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d 579 (630)
|-|...-.||.||+||.| +|+|+.+++.+.
T Consensus 565 ynprtGmesL~v~piSKAsA~QRaGRAGRtg--PGKCfRLYt~~a 607 (902)
T KOG0923|consen 565 YNPRTGMESLLVTPISKASANQRAGRAGRTG--PGKCFRLYTAWA 607 (902)
T ss_pred cCCCcCceeEEEeeechhhhhhhccccCCCC--CCceEEeechhh
Confidence 334556679999999999 899999999553
No 123
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.84 E-value=1.7e-19 Score=173.12 Aligned_cols=187 Identities=41% Similarity=0.627 Sum_probs=157.5
Q ss_pred cCCCCCcHHHHHHHHHHHcC-CCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHH
Q 006824 243 QGYEKPTSIQCQALPIILSG-RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (630)
Q Consensus 243 ~~~~~~~~~Q~~~i~~il~g-~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 321 (630)
.++..|+++|.++++.+... +.+++.++||+|||.+++.+++.++...+ ..++||++|++.++.|+...+.++
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~------~~~~l~~~p~~~~~~~~~~~~~~~ 77 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK------GKRVLVLVPTRELAEQWAEELKKL 77 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC------CCcEEEEeCCHHHHHHHHHHHHHH
Confidence 45678999999999999999 99999999999999988888888775432 456999999999999999999988
Q ss_pred hhhcCceEEEEECCCChHHHHHHHHcCC-cEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCcHHHHHHHHhhc
Q 006824 322 AKSHGIRVSAVYGGMSKLDQFKELKAGC-EIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI 400 (630)
Q Consensus 322 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~-dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l 400 (630)
+...........++......+..+..+. +|+++|++.+...+.........+.++|+||+|.+....+...+..++..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~ 157 (201)
T smart00487 78 GPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLL 157 (201)
T ss_pred hccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhC
Confidence 7654445566666666666777777776 999999999999988766667789999999999988757788888898888
Q ss_pred CCCCcEEEEeecccHHHHHHHHHHcCCCeEEEEcc
Q 006824 401 RPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGE 435 (630)
Q Consensus 401 ~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~ 435 (630)
++..+++++|||+++.....+..++.+.+.+....
T Consensus 158 ~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~~ 192 (201)
T smart00487 158 PKNVQLLLLSATPPEEIENLLELFLNDPVFIDVGP 192 (201)
T ss_pred CccceEEEEecCCchhHHHHHHHhcCCCEEEeCCc
Confidence 88899999999999998888988888777766543
No 124
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=2.4e-20 Score=197.95 Aligned_cols=310 Identities=21% Similarity=0.271 Sum_probs=196.4
Q ss_pred HHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEE
Q 006824 251 IQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVS 330 (630)
Q Consensus 251 ~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~ 330 (630)
-.++++..|..+--+|+||.||||||.+ +|-+.+-.....-...++..+=|.-|.|-.|..++.....-+..++-.|.
T Consensus 260 eEq~IMEaIn~n~vvIIcGeTGsGKTTQ--vPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVs 337 (1172)
T KOG0926|consen 260 EEQRIMEAINENPVVIICGETGSGKTTQ--VPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVS 337 (1172)
T ss_pred HHHHHHHHhhcCCeEEEecCCCCCcccc--chHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCcccee
Confidence 3455677777888899999999999965 55443332222112223446778889998877766554333222343333
Q ss_pred E--EECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhh-cC----CcHHHHHHHHhhcC--
Q 006824 331 A--VYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF-DL----GFEPQIRSIVGQIR-- 401 (630)
Q Consensus 331 ~--~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~-~~----~~~~~v~~i~~~l~-- 401 (630)
+ -+.|.-. ....|.++|-|.|+.-+.... .|..++.|||||||.=. .. |....+-.+...+.
T Consensus 338 YqIRfd~ti~--------e~T~IkFMTDGVLLrEi~~Df-lL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke 408 (1172)
T KOG0926|consen 338 YQIRFDGTIG--------EDTSIKFMTDGVLLREIENDF-LLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKE 408 (1172)
T ss_pred EEEEeccccC--------CCceeEEecchHHHHHHHHhH-hhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhh
Confidence 3 2222211 237899999999999887654 48899999999999511 00 11222222222221
Q ss_pred ----CCCcEEEEeecccHHHHHHH--HHHcCC-CeEEEEcccccccccceEEEEEcCCccccHHHHHH--hccCCCCCCC
Q 006824 402 ----PDRQTLLFSATMPRKVEKLA--REILSD-PVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLE--KLPGMIDDGD 472 (630)
Q Consensus 402 ----~~~q~l~~SAT~~~~~~~l~--~~~~~~-~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~--~l~~~~~~~~ 472 (630)
+...+|+||||+-- .++. +.++.. |-.+.+ ......+..+|..-...+.-...+-. .+.+.++.|.
T Consensus 409 ~~~~kpLKLIIMSATLRV--sDFtenk~LFpi~pPlikV---dARQfPVsIHF~krT~~DYi~eAfrKtc~IH~kLP~G~ 483 (1172)
T KOG0926|consen 409 QCQIKPLKLIIMSATLRV--SDFTENKRLFPIPPPLIKV---DARQFPVSIHFNKRTPDDYIAEAFRKTCKIHKKLPPGG 483 (1172)
T ss_pred hcccCceeEEEEeeeEEe--cccccCceecCCCCceeee---ecccCceEEEeccCCCchHHHHHHHHHHHHhhcCCCCc
Confidence 24578999999842 2222 111111 112222 22333444444433222211111111 2334567899
Q ss_pred EEEEccchhhHHHHHHHHHhC-----------------------------------------------------------
Q 006824 473 VLVFASKKTTVDEIESQLAQK----------------------------------------------------------- 493 (630)
Q Consensus 473 iLIF~~s~~~~~~l~~~L~~~----------------------------------------------------------- 493 (630)
||||+....++..++..|++.
T Consensus 484 ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~ 563 (1172)
T KOG0926|consen 484 ILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFAS 563 (1172)
T ss_pred EEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchh
Confidence 999999999999999888760
Q ss_pred ----------------------------------------CCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccC
Q 006824 494 ----------------------------------------GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARG 533 (630)
Q Consensus 494 ----------------------------------------~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~G 533 (630)
..-|..+++-++.....+++..--.|..-++|||+++...
T Consensus 564 ~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETS 643 (1172)
T KOG0926|consen 564 LRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETS 643 (1172)
T ss_pred hhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcc
Confidence 0126677777888888888887788888899999999999
Q ss_pred CCCCCccEEEE--------eCCCCCHHHH----------HHHhhhcccCCCCCeEEEEEeccc
Q 006824 534 LDIKSIKSVVN--------FDIARDMDMH----------VHRIGRTGRAGDKDGTAYTLVTQK 578 (630)
Q Consensus 534 ldi~~v~~VI~--------~~~p~~~~~y----------~QriGR~gR~g~~~g~~~~l~~~~ 578 (630)
|.||++++||. ||--.....| -||+||+||.| +|+||.|++..
T Consensus 644 LTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg--pGHcYRLYSSA 704 (1172)
T KOG0926|consen 644 LTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG--PGHCYRLYSSA 704 (1172)
T ss_pred cccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC--CCceeehhhhH
Confidence 99999999996 4444433333 49999999999 79999999864
No 125
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.84 E-value=1.7e-19 Score=199.95 Aligned_cols=329 Identities=17% Similarity=0.174 Sum_probs=217.4
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcC
Q 006824 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (630)
Q Consensus 247 ~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~ 326 (630)
.|++.|.-+--.+ .+.-|..+.||+|||+++.+|++...+. |..|.|++||..||.|-++++..++..+|
T Consensus 82 ~~ydVQliGg~~L--h~G~iaEM~TGEGKTLvA~l~a~l~al~--------G~~VhvvT~ndyLA~RD~e~m~~l~~~lG 151 (913)
T PRK13103 82 RHFDVQLIGGMTL--HEGKIAEMRTGEGKTLVGTLAVYLNALS--------GKGVHVVTVNDYLARRDANWMRPLYEFLG 151 (913)
T ss_pred CcchhHHHhhhHh--ccCccccccCCCCChHHHHHHHHHHHHc--------CCCEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 4555665554444 4556899999999999999999877654 66799999999999999999999999999
Q ss_pred ceEEEEECCCChHHHHHHHHcCCcEEEeChHHH-HHHHHcc------ccccCceeEEEecchhhhhc-CC----------
Q 006824 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRL-IDMLKMK------ALTMSRVTYLVLDEADRMFD-LG---------- 388 (630)
Q Consensus 327 ~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L-~~~l~~~------~~~l~~i~~lVvDEah~~~~-~~---------- 388 (630)
+++.++.++.+..+.... .. |+|+++|..-| .++|+.+ ....+.+.++||||+|+++- ..
T Consensus 152 l~v~~i~~~~~~~err~~-Y~-~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLIISg~~ 229 (913)
T PRK13103 152 LSVGIVTPFQPPEEKRAA-YA-ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLIISGQA 229 (913)
T ss_pred CEEEEECCCCCHHHHHHH-hc-CCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCceeecCCC
Confidence 999999887765544333 33 99999999876 2333322 22347899999999998631 00
Q ss_pred -----cHHHHHHHHhhcCC-------------------C-----------------------------------------
Q 006824 389 -----FEPQIRSIVGQIRP-------------------D----------------------------------------- 403 (630)
Q Consensus 389 -----~~~~v~~i~~~l~~-------------------~----------------------------------------- 403 (630)
....+..+...+.. .
T Consensus 230 ~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~~~~ 309 (913)
T PRK13103 230 EDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGLLTH 309 (913)
T ss_pred ccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhHHHHH
Confidence 01111111111100 0
Q ss_pred ---------------------------------------------------------------------------CcEEE
Q 006824 404 ---------------------------------------------------------------------------RQTLL 408 (630)
Q Consensus 404 ---------------------------------------------------------------------------~q~l~ 408 (630)
.++.+
T Consensus 310 i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kLsG 389 (913)
T PRK13103 310 VYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNKLSG 389 (913)
T ss_pred HHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcchhcc
Confidence 12333
Q ss_pred EeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCccccHHHHHHhccCCC-CCCCEEEEccchhhHHHHH
Q 006824 409 FSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIE 487 (630)
Q Consensus 409 ~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~-~~~~iLIF~~s~~~~~~l~ 487 (630)
||+|...+...+...|-- ++.+.....+.. .....-.++.....|+..+++.+.... .+.||||-+.|....+.|+
T Consensus 390 MTGTa~te~~Ef~~iY~l-~Vv~IPTnkP~~--R~D~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls 466 (913)
T PRK13103 390 MTGTADTEAFEFRQIYGL-DVVVIPPNKPLA--RKDFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMS 466 (913)
T ss_pred CCCCCHHHHHHHHHHhCC-CEEECCCCCCcc--cccCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHH
Confidence 333333222222222211 111111111111 111111223345678888888776553 3558999999999999999
Q ss_pred HHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcC-CceEEEEcCCcccCCCCC-----------------------------
Q 006824 488 SQLAQKGFKAAALHGDKDQASRMEILQKFKSG-VYHVLIATDVAARGLDIK----------------------------- 537 (630)
Q Consensus 488 ~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g-~~~VLvaT~~~~~Gldi~----------------------------- 537 (630)
..|...|++..+++.... +++.-+-. ..| ...|.|||++++||-||.
T Consensus 467 ~~L~~~gi~h~VLNAk~~--~~EA~IIa-~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (913)
T PRK13103 467 NLLKKEGIEHKVLNAKYH--EKEAEIIA-QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQK 543 (913)
T ss_pred HHHHHcCCcHHHhccccc--hhHHHHHH-cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHh
Confidence 999999999888877533 33322222 455 457999999999999995
Q ss_pred --------CccEEEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEeccccHHH----HHHHHHHHHHcC
Q 006824 538 --------SIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARF----AGELVNSLIAAG 594 (630)
Q Consensus 538 --------~v~~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~~----~~~l~~~l~~~~ 594 (630)
+=-+||--..+.|.-.-.|..||+||.| .+|.+.+|++-+|.-+ ..++.+.+...+
T Consensus 544 ~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQG-DPGsS~f~lSlED~Lmr~fg~~~~~~~~~~~~ 611 (913)
T PRK13103 544 RHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQG-DPGSSRFYLSLEDSLMRIFASDRVKNFMKALG 611 (913)
T ss_pred HHHHHHHcCCCEEEeeccCchHHHHHHhccccccCC-CCCceEEEEEcCcHHHHhhCcHHHHHHHHHcC
Confidence 3347888889999999999999999999 5899999999887433 235555555443
No 126
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.84 E-value=5.4e-20 Score=198.50 Aligned_cols=297 Identities=19% Similarity=0.214 Sum_probs=191.2
Q ss_pred CCCcHHHHHHHHHHH----cC-CCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHH
Q 006824 246 EKPTSIQCQALPIIL----SG-RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKK 320 (630)
Q Consensus 246 ~~~~~~Q~~~i~~il----~g-~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~ 320 (630)
..|+.+|..||..+. .| +.+|+++.||+|||.++ +.++..+++. +.-.++|+|+-+++|+.|.+..+..
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTA-iaii~rL~r~-----~~~KRVLFLaDR~~Lv~QA~~af~~ 237 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTA-IAIIDRLIKS-----GWVKRVLFLADRNALVDQAYGAFED 237 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeH-HHHHHHHHhc-----chhheeeEEechHHHHHHHHHHHHH
Confidence 358899999997754 44 45899999999999764 3444444432 3467799999999999999999988
Q ss_pred HhhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHcc-----ccccCceeEEEecchhhhhcCCcHHHHHH
Q 006824 321 FAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK-----ALTMSRVTYLVLDEADRMFDLGFEPQIRS 395 (630)
Q Consensus 321 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~-----~~~l~~i~~lVvDEah~~~~~~~~~~v~~ 395 (630)
+..... .+..+.+ .... ..+.|.|+|++.+...+... .+....+++||||||||-. ......
T Consensus 238 ~~P~~~-~~n~i~~-~~~~-------~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi----~~~~~~ 304 (875)
T COG4096 238 FLPFGT-KMNKIED-KKGD-------TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGI----YSEWSS 304 (875)
T ss_pred hCCCcc-ceeeeec-ccCC-------cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhH----HhhhHH
Confidence 876422 2222221 1111 13899999999999888754 2223458999999999944 333336
Q ss_pred HHhhcCCCCcEEEEeecccHHHHHHHHHHc-CCCeEEE------------------Ec----ccccccccc---------
Q 006824 396 IVGQIRPDRQTLLFSATMPRKVEKLAREIL-SDPVRVT------------------VG----EVGMANEDI--------- 443 (630)
Q Consensus 396 i~~~l~~~~q~l~~SAT~~~~~~~l~~~~~-~~~~~i~------------------~~----~~~~~~~~i--------- 443 (630)
|+.++..-. +++|||+...+..---.|+ +.|+..+ +. ..+......
T Consensus 305 I~dYFdA~~--~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~ 382 (875)
T COG4096 305 ILDYFDAAT--QGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGE 382 (875)
T ss_pred HHHHHHHHH--HhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhcc
Confidence 666554333 4459998764433222333 3332211 10 001110000
Q ss_pred -----eEEEEEcC--------C-ccccHHHHHHhccCC--C-CCCCEEEEccchhhHHHHHHHHHhC-----CCcEEEEe
Q 006824 444 -----TQVVHVIP--------S-DAEKLPWLLEKLPGM--I-DDGDVLVFASKKTTVDEIESQLAQK-----GFKAAALH 501 (630)
Q Consensus 444 -----~q~~~~~~--------~-~~~k~~~l~~~l~~~--~-~~~~iLIF~~s~~~~~~l~~~L~~~-----~~~~~~ih 501 (630)
.+.+...+ . ...-...|.+.+... . .-+++||||.+..+|++++..|... +--+..|.
T Consensus 383 ~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT 462 (875)
T COG4096 383 AIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKIT 462 (875)
T ss_pred ccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEe
Confidence 00010000 0 001112333444431 1 1468999999999999999999764 34467788
Q ss_pred CCCCHHHHHHHHHHhhc-CC-ceEEEEcCCcccCCCCCCccEEEEeCCCCCHHHHHHHhhhcccCC
Q 006824 502 GDKDQASRMEILQKFKS-GV-YHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAG 565 (630)
Q Consensus 502 g~~~~~~r~~~~~~F~~-g~-~~VLvaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~QriGR~gR~g 565 (630)
|.-.+. ...+..|.. .+ .+|.|+.+++..|+|+|.|..+|++..-.|..-|.||+||..|.-
T Consensus 463 ~d~~~~--q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl~ 526 (875)
T COG4096 463 GDAEQA--QALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRLC 526 (875)
T ss_pred ccchhh--HHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccccC
Confidence 865543 344666655 33 457777799999999999999999999999999999999999953
No 127
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.84 E-value=1e-18 Score=196.01 Aligned_cols=147 Identities=22% Similarity=0.340 Sum_probs=127.2
Q ss_pred ccHHHHHHhccCCCC-CCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccC
Q 006824 455 EKLPWLLEKLPGMID-DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARG 533 (630)
Q Consensus 455 ~k~~~l~~~l~~~~~-~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~G 533 (630)
.++..|+..|..... +.++||||+++..++.++..|...|+++..+||++++.+|..++..|+.|++.|||||+.+++|
T Consensus 430 ~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rG 509 (652)
T PRK05298 430 GQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREG 509 (652)
T ss_pred ccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCC
Confidence 456677777766543 4579999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccEEEEeCC-----CCCHHHHHHHhhhcccCCCCCeEEEEEecc---------ccHHHHHHHHHHHHHcCCCCCH
Q 006824 534 LDIKSIKSVVNFDI-----ARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ---------KEARFAGELVNSLIAAGQNVSM 599 (630)
Q Consensus 534 ldi~~v~~VI~~~~-----p~~~~~y~QriGR~gR~g~~~g~~~~l~~~---------~d~~~~~~l~~~l~~~~~~vp~ 599 (630)
+|+|++++||+++. |.+...|+||+||+||. ..|.|++|++. .+...+.++...+......+|.
T Consensus 510 fdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~--~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 587 (652)
T PRK05298 510 LDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN--VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITPK 587 (652)
T ss_pred ccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC--CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCCh
Confidence 99999999999885 78999999999999996 47999999984 4556666677777777777776
Q ss_pred HHHH
Q 006824 600 ELMD 603 (630)
Q Consensus 600 ~L~~ 603 (630)
....
T Consensus 588 ~~~~ 591 (652)
T PRK05298 588 TIKK 591 (652)
T ss_pred hHHH
Confidence 6543
No 128
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.84 E-value=1.8e-19 Score=200.32 Aligned_cols=315 Identities=21% Similarity=0.256 Sum_probs=221.2
Q ss_pred CcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHH-HhhhcC
Q 006824 248 PTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKK-FAKSHG 326 (630)
Q Consensus 248 ~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~-~~~~~~ 326 (630)
.+..+.+.+..+.+.+-++++|.||+|||.+.---++.+..... ...++++--|.|-.|.-+++.+.+ .....|
T Consensus 174 a~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~-----~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g 248 (924)
T KOG0920|consen 174 AYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG-----AACNIICTQPRRISAISVAERVAKERGESLG 248 (924)
T ss_pred cHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC-----CCCeEEecCCchHHHHHHHHHHHHHhccccC
Confidence 35678888999999999999999999999774444555554432 355577778999888777766543 333345
Q ss_pred ceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhh-hhcCCcHHHHHHHHhhcCCCCc
Q 006824 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR-MFDLGFEPQIRSIVGQIRPDRQ 405 (630)
Q Consensus 327 ~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~-~~~~~~~~~v~~i~~~l~~~~q 405 (630)
-.|..-.+..+.. .....+.+||.+.|++.+.. ...+..+++||+||+|. =.+..|.-.+...+-..+++.+
T Consensus 249 ~~VGYqvrl~~~~------s~~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~Lk 321 (924)
T KOG0920|consen 249 EEVGYQVRLESKR------SRETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLK 321 (924)
T ss_pred CeeeEEEeeeccc------CCceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCce
Confidence 4444433332221 12367999999999999877 44688999999999994 3344566556555666679999
Q ss_pred EEEEeecccHHHHHHHHHHcCCCeEEEEccccccc----------------ccceEE------------EEEcC--Cccc
Q 006824 406 TLLFSATMPRKVEKLAREILSDPVRVTVGEVGMAN----------------EDITQV------------VHVIP--SDAE 455 (630)
Q Consensus 406 ~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~----------------~~i~q~------------~~~~~--~~~~ 455 (630)
+|+||||+.. +++..|++....+.+....... .+..+. ..... .+..
T Consensus 322 vILMSAT~da---e~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~ 398 (924)
T KOG0920|consen 322 VILMSATLDA---ELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYD 398 (924)
T ss_pred EEEeeeecch---HHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHH
Confidence 9999999973 3555666554344333221111 000111 00000 0111
Q ss_pred cHHHHHHhccCCCCCCCEEEEccchhhHHHHHHHHHhC-------CCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcC
Q 006824 456 KLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK-------GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD 528 (630)
Q Consensus 456 k~~~l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~-------~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~ 528 (630)
-+..++..+......|.||||.+.+..+..+.+.|... .+-+..+|+.++..+...+...--.|..+|+++|+
T Consensus 399 Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTN 478 (924)
T KOG0920|consen 399 LIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATN 478 (924)
T ss_pred HHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhh
Confidence 12334444444445789999999999999999999642 36688999999999999998888899999999999
Q ss_pred CcccCCCCCCccEEEE--------eCCCCCH----------HHHHHHhhhcccCCCCCeEEEEEecccc
Q 006824 529 VAARGLDIKSIKSVVN--------FDIARDM----------DMHVHRIGRTGRAGDKDGTAYTLVTQKE 579 (630)
Q Consensus 529 ~~~~Gldi~~v~~VI~--------~~~p~~~----------~~y~QriGR~gR~g~~~g~~~~l~~~~d 579 (630)
+++..|.|++|-+||. ||+-.+. ..-.||.||+||.- .|.||.+++...
T Consensus 479 IAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~--~G~cy~L~~~~~ 545 (924)
T KOG0920|consen 479 IAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVR--PGICYHLYTRSR 545 (924)
T ss_pred hHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCcc--CCeeEEeechhh
Confidence 9999999999999995 6654433 34469999999985 899999999754
No 129
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.83 E-value=1.4e-19 Score=189.17 Aligned_cols=309 Identities=20% Similarity=0.259 Sum_probs=199.1
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcC
Q 006824 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (630)
Q Consensus 247 ~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~ 326 (630)
.....+.+.+..|-.++-++++++||||||.+ +|-+ ++... -.+...+-+.-|.|..|..++.....- .+
T Consensus 356 Pvf~~R~~ll~~ir~n~vvvivgETGSGKTTQ--l~Qy--L~edG---Y~~~GmIGcTQPRRvAAiSVAkrVa~E---M~ 425 (1042)
T KOG0924|consen 356 PVFACRDQLLSVIRENQVVVIVGETGSGKTTQ--LAQY--LYEDG---YADNGMIGCTQPRRVAAISVAKRVAEE---MG 425 (1042)
T ss_pred chHHHHHHHHHHHhhCcEEEEEecCCCCchhh--hHHH--HHhcc---cccCCeeeecCchHHHHHHHHHHHHHH---hC
Confidence 34456667777777888999999999999976 3322 22211 112334556669998888776554433 23
Q ss_pred ceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCcHHHHHHHHhh---cCCC
Q 006824 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQ---IRPD 403 (630)
Q Consensus 327 ~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~---l~~~ 403 (630)
.....-.|..-+.+..-. ...-|-+.|-+.|+.-.-... .|..+++||+||||.=. . +.+.+.-++.. -+.+
T Consensus 426 ~~lG~~VGYsIRFEdvT~--~~T~IkymTDGiLLrEsL~d~-~L~kYSviImDEAHERs-l-NtDilfGllk~~larRrd 500 (1042)
T KOG0924|consen 426 VTLGDTVGYSIRFEDVTS--EDTKIKYMTDGILLRESLKDR-DLDKYSVIIMDEAHERS-L-NTDILFGLLKKVLARRRD 500 (1042)
T ss_pred CccccccceEEEeeecCC--CceeEEEeccchHHHHHhhhh-hhhheeEEEechhhhcc-c-chHHHHHHHHHHHHhhcc
Confidence 333222222222221110 125688899998876443333 47789999999999521 1 12333333322 2457
Q ss_pred CcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCccccHHHHHHhcc--CCCCCCCEEEEccchh
Q 006824 404 RQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLP--GMIDDGDVLVFASKKT 481 (630)
Q Consensus 404 ~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~--~~~~~~~iLIF~~s~~ 481 (630)
..+|+.|||+. .+++..-|...|.....|. ...+...+...+..+.--..+-..+. .....|.+|||.....
T Consensus 501 lKliVtSATm~--a~kf~nfFgn~p~f~IpGR----TyPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqe 574 (1042)
T KOG0924|consen 501 LKLIVTSATMD--AQKFSNFFGNCPQFTIPGR----TYPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQE 574 (1042)
T ss_pred ceEEEeecccc--HHHHHHHhCCCceeeecCC----ccceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCc
Confidence 88999999995 4556655554565544332 22333333333222221122222222 1124578999999988
Q ss_pred hHHHHHHHHHhC----------CCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEEEEeCC----
Q 006824 482 TVDEIESQLAQK----------GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDI---- 547 (630)
Q Consensus 482 ~~~~l~~~L~~~----------~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~---- 547 (630)
..+-.+..+... ++.+..|++.+++.-..++++.-..|..+++|||++++..|.|+++.+||..+.
T Consensus 575 diE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~k 654 (1042)
T KOG0924|consen 575 DIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLK 654 (1042)
T ss_pred chhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeee
Confidence 776655555432 578999999999999999988888899999999999999999999999997443
Q ss_pred --------------CCCHHHHHHHhhhcccCCCCCeEEEEEeccc
Q 006824 548 --------------ARDMDMHVHRIGRTGRAGDKDGTAYTLVTQK 578 (630)
Q Consensus 548 --------------p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~ 578 (630)
|-|-..-.||.||+||.| +|+||.+++..
T Consensus 655 vyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~--pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 655 VYNPRIGMDALQIVPISQANADQRAGRAGRTG--PGTCYRLYTED 697 (1042)
T ss_pred ecccccccceeEEEechhccchhhccccCCCC--Ccceeeehhhh
Confidence 334556679999999998 89999999973
No 130
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.83 E-value=5.9e-19 Score=193.50 Aligned_cols=329 Identities=18% Similarity=0.217 Sum_probs=223.8
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcC
Q 006824 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (630)
Q Consensus 247 ~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~ 326 (630)
.|++.|.-+.-.+..| -|..+.||-|||+++.+|+..+.+. |..|-||+..--||..=.+++..++..+|
T Consensus 78 r~ydVQliGglvLh~G--~IAEMkTGEGKTLvAtLpayLnAL~--------GkgVhVVTvNdYLA~RDae~mg~vy~fLG 147 (925)
T PRK12903 78 RPYDVQIIGGIILDLG--SVAEMKTGEGKTITSIAPVYLNALT--------GKGVIVSTVNEYLAERDAEEMGKVFNFLG 147 (925)
T ss_pred CcCchHHHHHHHHhcC--CeeeecCCCCccHHHHHHHHHHHhc--------CCceEEEecchhhhhhhHHHHHHHHHHhC
Confidence 5777777776666555 5899999999999999998766543 55688999999999999999999999999
Q ss_pred ceEEEEECCCChHHHHHHHHcCCcEEEeChHHHH-HHHHcc------ccccCceeEEEecchhhhhc-CC----------
Q 006824 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLI-DMLKMK------ALTMSRVTYLVLDEADRMFD-LG---------- 388 (630)
Q Consensus 327 ~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~-~~l~~~------~~~l~~i~~lVvDEah~~~~-~~---------- 388 (630)
+++.++..+.........+ .|||+.+|..-|- ++|+.+ ....+.+.+.||||+|.++- ..
T Consensus 148 LsvG~i~~~~~~~~rr~aY--~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLIISg~~ 225 (925)
T PRK12903 148 LSVGINKANMDPNLKREAY--ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISGGQ 225 (925)
T ss_pred CceeeeCCCCChHHHHHhc--cCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCcccccCCC
Confidence 9999998876655443332 4999999987763 344322 22356789999999998631 00
Q ss_pred -----cHHHHHHHHhhcCC-------C-----------------------------------------------------
Q 006824 389 -----FEPQIRSIVGQIRP-------D----------------------------------------------------- 403 (630)
Q Consensus 389 -----~~~~v~~i~~~l~~-------~----------------------------------------------------- 403 (630)
+...+..+...+.. .
T Consensus 226 ~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~dYiV 305 (925)
T PRK12903 226 SNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVEYIV 305 (925)
T ss_pred ccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCCceEE
Confidence 11111222222111 0
Q ss_pred --------------------------------------------------------CcEEEEeecccHHHHHHHHHHcCC
Q 006824 404 --------------------------------------------------------RQTLLFSATMPRKVEKLAREILSD 427 (630)
Q Consensus 404 --------------------------------------------------------~q~l~~SAT~~~~~~~l~~~~~~~ 427 (630)
.++.+||+|...+-.++...|.-+
T Consensus 306 ~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY~l~ 385 (925)
T PRK12903 306 RDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYNMR 385 (925)
T ss_pred ECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhCCC
Confidence 234445555444433343333222
Q ss_pred CeEEEEcccccccccceEEEEEcCCccccHHHHHHhccCCC-CCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCH
Q 006824 428 PVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQ 506 (630)
Q Consensus 428 ~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~-~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~ 506 (630)
.+.+ ....+ .......-.++.....|+..++..+.... .+.||||.|.|....+.|+..|.+.|++..+++...
T Consensus 386 Vv~I-PTnkP--~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~-- 460 (925)
T PRK12903 386 VNVV-PTNKP--VIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQ-- 460 (925)
T ss_pred EEEC-CCCCC--eeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccc--
Confidence 1111 11111 11111111222345678888888776543 455999999999999999999999999999999853
Q ss_pred HHHHHHHHHhhcC-CceEEEEcCCcccCCCCCCcc--------EEEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEecc
Q 006824 507 ASRMEILQKFKSG-VYHVLIATDVAARGLDIKSIK--------SVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ 577 (630)
Q Consensus 507 ~~r~~~~~~F~~g-~~~VLvaT~~~~~Gldi~~v~--------~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~ 577 (630)
.+++..+-. ..| ...|.|||++++||-||.--. +||....|.|...-.|..||+||.| .+|.+.+|++-
T Consensus 461 ~e~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQG-DpGss~f~lSL 538 (925)
T PRK12903 461 NAREAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQG-DVGESRFFISL 538 (925)
T ss_pred hhhHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCC-CCCcceEEEec
Confidence 344433333 556 467999999999999998433 8999999999988999999999999 68999999998
Q ss_pred ccHHHH-----HHHHHHHHHcC
Q 006824 578 KEARFA-----GELVNSLIAAG 594 (630)
Q Consensus 578 ~d~~~~-----~~l~~~l~~~~ 594 (630)
.|.-+- .++...+...+
T Consensus 539 eD~L~r~f~~~~ri~~~~~~l~ 560 (925)
T PRK12903 539 DDQLFRRFSNFDKIKEAFKKLG 560 (925)
T ss_pred chHHHHHhCCHHHHHHHHHhcC
Confidence 874332 35666565544
No 131
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.83 E-value=3.6e-18 Score=188.25 Aligned_cols=312 Identities=22% Similarity=0.321 Sum_probs=210.4
Q ss_pred CCCcHHHHHHHHHHHcC----CCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHH
Q 006824 246 EKPTSIQCQALPIILSG----RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (630)
Q Consensus 246 ~~~~~~Q~~~i~~il~g----~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 321 (630)
..+++-|..++..+.+. .-.++.+-||||||.+|+ .++..++.+ |..+|||+|-.+|..|+...++..
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl-~~i~~~L~~-------GkqvLvLVPEI~Ltpq~~~rf~~r 268 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYL-EAIAKVLAQ-------GKQVLVLVPEIALTPQLLARFKAR 268 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHH-HHHHHHHHc-------CCEEEEEeccccchHHHHHHHHHH
Confidence 46889999999998765 678999999999999865 555555554 778999999999999998888777
Q ss_pred hhhcCceEEEEECCCChHHH---HHHHH-cCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcC---CcHHHHH
Q 006824 322 AKSHGIRVSAVYGGMSKLDQ---FKELK-AGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDL---GFEPQIR 394 (630)
Q Consensus 322 ~~~~~~~~~~~~gg~~~~~~---~~~l~-~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~---~~~~~v~ 394 (630)
+ |.++.+++++.+..+. |.... +...|+|+|-..| ...++++++|||||=|--.-. +...+.+
T Consensus 269 F---g~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-------F~Pf~~LGLIIvDEEHD~sYKq~~~prYhAR 338 (730)
T COG1198 269 F---GAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL-------FLPFKNLGLIIVDEEHDSSYKQEDGPRYHAR 338 (730)
T ss_pred h---CCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh-------cCchhhccEEEEeccccccccCCcCCCcCHH
Confidence 5 6888889988876554 44444 3589999996544 336789999999999953211 1111222
Q ss_pred --HHHhhcCCCCcEEEEeecccHHHHHHHHHHcCCCeEEEEccc-ccc-cccceEEEEEcCCcccc----HHHHHHhccC
Q 006824 395 --SIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEV-GMA-NEDITQVVHVIPSDAEK----LPWLLEKLPG 466 (630)
Q Consensus 395 --~i~~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~-~~~-~~~i~q~~~~~~~~~~k----~~~l~~~l~~ 466 (630)
.++..-..+.++|+-|||++-+ .+.+..-+....+..... +.+ ...+. .+..-...... ...|++.+.+
T Consensus 339 dvA~~Ra~~~~~pvvLgSATPSLE--S~~~~~~g~y~~~~L~~R~~~a~~p~v~-iiDmr~e~~~~~~~lS~~Ll~~i~~ 415 (730)
T COG1198 339 DVAVLRAKKENAPVVLGSATPSLE--SYANAESGKYKLLRLTNRAGRARLPRVE-IIDMRKEPLETGRSLSPALLEAIRK 415 (730)
T ss_pred HHHHHHHHHhCCCEEEecCCCCHH--HHHhhhcCceEEEEccccccccCCCcce-EEeccccccccCccCCHHHHHHHHH
Confidence 2333334578899999998744 344332222222222211 111 22221 11111111111 1455555554
Q ss_pred CC-CCCCEEEEccchhhH------------------------------------------------------------HH
Q 006824 467 MI-DDGDVLVFASKKTTV------------------------------------------------------------DE 485 (630)
Q Consensus 467 ~~-~~~~iLIF~~s~~~~------------------------------------------------------------~~ 485 (630)
.. .+.++|+|.|++..+ ++
T Consensus 416 ~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~Gter 495 (730)
T COG1198 416 TLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTER 495 (730)
T ss_pred HHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHH
Confidence 43 345788888887655 44
Q ss_pred HHHHHHhC--CCcEEEEeCCCCHH--HHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEEEEeCCCC------------
Q 006824 486 IESQLAQK--GFKAAALHGDKDQA--SRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIAR------------ 549 (630)
Q Consensus 486 l~~~L~~~--~~~~~~ihg~~~~~--~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~------------ 549 (630)
+.+.|.+. +.++..+.++++.. .-...+..|.+|+.+|||.|++++.|+|+|+++.|...+...
T Consensus 496 ieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er 575 (730)
T COG1198 496 IEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASER 575 (730)
T ss_pred HHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHH
Confidence 44445443 56788888887654 356789999999999999999999999999999988766543
Q ss_pred CHHHHHHHhhhcccCCCCCeEEEEEecccc
Q 006824 550 DMDMHVHRIGRTGRAGDKDGTAYTLVTQKE 579 (630)
Q Consensus 550 ~~~~y~QriGR~gR~g~~~g~~~~l~~~~d 579 (630)
....+.|-.||+||.+ ++|.+++-....+
T Consensus 576 ~fqll~QvaGRAgR~~-~~G~VvIQT~~P~ 604 (730)
T COG1198 576 TFQLLMQVAGRAGRAG-KPGEVVIQTYNPD 604 (730)
T ss_pred HHHHHHHHHhhhccCC-CCCeEEEEeCCCC
Confidence 2346789999999997 5788777655444
No 132
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.83 E-value=3e-18 Score=173.73 Aligned_cols=313 Identities=17% Similarity=0.207 Sum_probs=215.8
Q ss_pred CCCcHHHHHHHHHHH-cCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhh
Q 006824 246 EKPTSIQCQALPIIL-SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS 324 (630)
Q Consensus 246 ~~~~~~Q~~~i~~il-~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~ 324 (630)
..+.|+|.+++...+ .|..+++...||.|||++++..+-.+.. ..| .|||||. .+-..|.+.+..|+..
T Consensus 197 s~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyra--------Ewp-lliVcPA-svrftWa~al~r~lps 266 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRA--------EWP-LLIVCPA-SVRFTWAKALNRFLPS 266 (689)
T ss_pred HhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhh--------cCc-EEEEecH-HHhHHHHHHHHHhccc
Confidence 457899999997765 6788999999999999987655544432 244 6999996 4566799999999875
Q ss_pred cCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCcHHHHHHHHhhcCCCC
Q 006824 325 HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDR 404 (630)
Q Consensus 325 ~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~ 404 (630)
..- +.++.++...... +-....|.|.+++.|..+-. .+.-..+.+||+||+|.+.+.. ....+.++..+..-.
T Consensus 267 ~~p-i~vv~~~~D~~~~---~~t~~~v~ivSye~ls~l~~--~l~~~~~~vvI~DEsH~Lk~sk-tkr~Ka~~dllk~ak 339 (689)
T KOG1000|consen 267 IHP-IFVVDKSSDPLPD---VCTSNTVAIVSYEQLSLLHD--ILKKEKYRVVIFDESHMLKDSK-TKRTKAATDLLKVAK 339 (689)
T ss_pred ccc-eEEEecccCCccc---cccCCeEEEEEHHHHHHHHH--HHhcccceEEEEechhhhhccc-hhhhhhhhhHHHHhh
Confidence 433 4455555443322 11225699999988865432 2223458899999999977654 445777777777778
Q ss_pred cEEEEeeccc-------------------HHHHHHHHHHcCC-CeEEEEccccccc------------------------
Q 006824 405 QTLLFSATMP-------------------RKVEKLAREILSD-PVRVTVGEVGMAN------------------------ 440 (630)
Q Consensus 405 q~l~~SAT~~-------------------~~~~~l~~~~~~~-~~~i~~~~~~~~~------------------------ 440 (630)
++|++|+|+. ++..+++..||.- .+.+.....+..+
T Consensus 340 hvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~q 419 (689)
T KOG1000|consen 340 HVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQ 419 (689)
T ss_pred heEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8999999972 1233444445432 1111111111111
Q ss_pred --ccceEEEEEcCC-------------------------------------ccccHHHHHHhccCC-----CCCCCEEEE
Q 006824 441 --EDITQVVHVIPS-------------------------------------DAEKLPWLLEKLPGM-----IDDGDVLVF 476 (630)
Q Consensus 441 --~~i~q~~~~~~~-------------------------------------~~~k~~~l~~~l~~~-----~~~~~iLIF 476 (630)
.. .+.+.++.. ...|...+.+.|... ....+.|||
T Consensus 420 LPpK-rr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVF 498 (689)
T KOG1000|consen 420 LPPK-RREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVF 498 (689)
T ss_pred CCcc-ceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEE
Confidence 11 222222111 011222223333221 123489999
Q ss_pred ccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcC-CceE-EEEcCCcccCCCCCCccEEEEeCCCCCHHHH
Q 006824 477 ASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSG-VYHV-LIATDVAARGLDIKSIKSVVNFDIARDMDMH 554 (630)
Q Consensus 477 ~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g-~~~V-LvaT~~~~~Gldi~~v~~VI~~~~p~~~~~y 554 (630)
|......+.+...+.+.++....|.|.++..+|..+.+.|+.. ++.| +++-.+++.|+++..++.||+..++|||...
T Consensus 499 aHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvL 578 (689)
T KOG1000|consen 499 AHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVL 578 (689)
T ss_pred ehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceE
Confidence 9999999999999999999999999999999999999999865 4555 5666888999999999999999999999999
Q ss_pred HHHhhhcccCCCCCeEEEEEec
Q 006824 555 VHRIGRTGRAGDKDGTAYTLVT 576 (630)
Q Consensus 555 ~QriGR~gR~g~~~g~~~~l~~ 576 (630)
+|.-.|++|.|++..+-+.++.
T Consensus 579 lQAEDRaHRiGQkssV~v~ylv 600 (689)
T KOG1000|consen 579 LQAEDRAHRIGQKSSVFVQYLV 600 (689)
T ss_pred EechhhhhhccccceeeEEEEE
Confidence 9999999999976655444443
No 133
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.82 E-value=4.7e-19 Score=185.69 Aligned_cols=128 Identities=23% Similarity=0.413 Sum_probs=111.4
Q ss_pred ccccHHHHHHhccCCC-CCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCc-eEEEEcCCc
Q 006824 453 DAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVY-HVLIATDVA 530 (630)
Q Consensus 453 ~~~k~~~l~~~l~~~~-~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~-~VLvaT~~~ 530 (630)
++.|+..|..+|..+. .+.++|+|++...+.+.+.+||...++....+.|.....+|..++..|+...+ -+|++|.++
T Consensus 1026 dSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAG 1105 (1185)
T KOG0388|consen 1026 DSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAG 1105 (1185)
T ss_pred cccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccC
Confidence 4456666666666553 35689999999999999999999999999999999999999999999998654 568899999
Q ss_pred ccCCCCCCccEEEEeCCCCCHHHHHHHhhhcccCC-CCCeEEEEEeccccH
Q 006824 531 ARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAG-DKDGTAYTLVTQKEA 580 (630)
Q Consensus 531 ~~Gldi~~v~~VI~~~~p~~~~~y~QriGR~gR~g-~~~g~~~~l~~~~d~ 580 (630)
+-|||+..+++||+||..|||..-.|.+.|++|.| .+..++|.+++..-.
T Consensus 1106 GLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTv 1156 (1185)
T KOG0388|consen 1106 GLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTV 1156 (1185)
T ss_pred cccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccH
Confidence 99999999999999999999999999999999999 445678888887654
No 134
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.80 E-value=2.6e-17 Score=188.42 Aligned_cols=326 Identities=19% Similarity=0.227 Sum_probs=203.2
Q ss_pred CCcHHHHHHHHHH----HcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHH-HHHHHH
Q 006824 247 KPTSIQCQALPII----LSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIY-LETKKF 321 (630)
Q Consensus 247 ~~~~~Q~~~i~~i----l~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~-~~~~~~ 321 (630)
.+++-|.+....+ ..+..+++.|+||+|||++|++|++.+. .+.++||++||++|+.|+. ..+..+
T Consensus 245 e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~---------~~~~vvI~t~T~~Lq~Ql~~~~i~~l 315 (820)
T PRK07246 245 EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS---------DQRQIIVSVPTKILQDQIMAEEVKAI 315 (820)
T ss_pred ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc---------CCCcEEEEeCcHHHHHHHHHHHHHHH
Confidence 5899999855443 3678899999999999999999988753 2567999999999999994 777777
Q ss_pred hhhcCceEEEEECCCChH-----HH------------------------------------------HHHH---------
Q 006824 322 AKSHGIRVSAVYGGMSKL-----DQ------------------------------------------FKEL--------- 345 (630)
Q Consensus 322 ~~~~~~~~~~~~gg~~~~-----~~------------------------------------------~~~l--------- 345 (630)
.+.+++++.++.|+.+.- .+ |..+
T Consensus 316 ~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~~~ 395 (820)
T PRK07246 316 QEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLSQS 395 (820)
T ss_pred HHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCCCC
Confidence 777788877777664311 00 0000
Q ss_pred ---------------HcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCC-----c-------HHHH-----
Q 006824 346 ---------------KAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG-----F-------EPQI----- 393 (630)
Q Consensus 346 ---------------~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~-----~-------~~~v----- 393 (630)
...++|||+....|...+.... .+...+++||||||++.+.. . ...+
T Consensus 396 cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~-~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 474 (820)
T PRK07246 396 SLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK-DFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTIQKALS 474 (820)
T ss_pred CCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc-CCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHHHHHHH
Confidence 0127899999988877664433 36789999999999874310 0 0000
Q ss_pred --------------------------------------------------------HHHHhh------c-----------
Q 006824 394 --------------------------------------------------------RSIVGQ------I----------- 400 (630)
Q Consensus 394 --------------------------------------------------------~~i~~~------l----------- 400 (630)
..++.. +
T Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~~~~~~ 554 (820)
T PRK07246 475 GPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQSEKRVT 554 (820)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCCccee
Confidence 000000 0
Q ss_pred ----------------CCCCcEEEEeeccc--HHHHHHHHHHcCC-CeEEEEcccccccccceEEEEEc----CCc----
Q 006824 401 ----------------RPDRQTLLFSATMP--RKVEKLAREILSD-PVRVTVGEVGMANEDITQVVHVI----PSD---- 453 (630)
Q Consensus 401 ----------------~~~~q~l~~SAT~~--~~~~~l~~~~~~~-~~~i~~~~~~~~~~~i~q~~~~~----~~~---- 453 (630)
+....+|++|||++ +.. .+...+.-+ .....+. .... .+...++ +..
T Consensus 555 ~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f-~~~~~lGl~~~~~~~~~---~~~~--~~~~~~i~~~~p~~~~~~ 628 (820)
T PRK07246 555 YLNSASKAFTHFSQLLPETCKTYFVSATLQISPRV-SLADLLGFEEYLFHKIE---KDKK--QDQLVVVDQDMPLVTETS 628 (820)
T ss_pred EEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCC-cHHHHcCCCccceecCC---CChH--HccEEEeCCCCCCCCCCC
Confidence 01146788888885 222 233222211 1111110 1111 1111111 111
Q ss_pred -cccHHHHHHhccCC-CCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcc
Q 006824 454 -AEKLPWLLEKLPGM-IDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAA 531 (630)
Q Consensus 454 -~~k~~~l~~~l~~~-~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~ 531 (630)
..-...+...+... ...|++||+++|+...+.++..|....+.+ ...|... .+..+++.|+++...||++|..+.
T Consensus 629 ~~~~~~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFw 705 (820)
T PRK07246 629 DEVYAEEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFW 705 (820)
T ss_pred hHHHHHHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhh
Confidence 11122333332211 246899999999999999999997665554 5555322 256689999999899999999999
Q ss_pred cCCCCCC--ccEEEEeCCCC----CH--------------------------HHHHHHhhhcccCCCCCeEEEEEeccc-
Q 006824 532 RGLDIKS--IKSVVNFDIAR----DM--------------------------DMHVHRIGRTGRAGDKDGTAYTLVTQK- 578 (630)
Q Consensus 532 ~Gldi~~--v~~VI~~~~p~----~~--------------------------~~y~QriGR~gR~g~~~g~~~~l~~~~- 578 (630)
+|+|+|+ ...||+..+|. +| ..+.|.+||.-|.....|.++++-..-
T Consensus 706 EGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~R~~ 785 (820)
T PRK07246 706 EGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDRRIL 785 (820)
T ss_pred CCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECCccc
Confidence 9999974 56677777652 21 124599999999885567655554432
Q ss_pred cHHHHHHHHHHHH
Q 006824 579 EARFAGELVNSLI 591 (630)
Q Consensus 579 d~~~~~~l~~~l~ 591 (630)
...+-..+.+.|.
T Consensus 786 ~k~Yg~~~l~sLP 798 (820)
T PRK07246 786 TKSYGKQILASLA 798 (820)
T ss_pred ccHHHHHHHHhCC
Confidence 3445566666653
No 135
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.80 E-value=6.2e-18 Score=186.81 Aligned_cols=275 Identities=17% Similarity=0.129 Sum_probs=177.9
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcC
Q 006824 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (630)
Q Consensus 247 ~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~ 326 (630)
.|++.|.-+. +.-.+..|..+.||.|||+++.+|++.+.+. |..|.||+++..||.+-++++..++..+|
T Consensus 76 r~ydvQlig~--l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL~--------G~~VhVvT~NdyLA~RD~e~m~pvy~~LG 145 (870)
T CHL00122 76 RHFDVQLIGG--LVLNDGKIAEMKTGEGKTLVATLPAYLNALT--------GKGVHIVTVNDYLAKRDQEWMGQIYRFLG 145 (870)
T ss_pred CCCchHhhhh--HhhcCCccccccCCCCchHHHHHHHHHHHhc--------CCceEEEeCCHHHHHHHHHHHHHHHHHcC
Confidence 3566666554 4445668999999999999999999655442 56699999999999999999999999999
Q ss_pred ceEEEEECCCChHHHHHHHHcCCcEEEeChHHHH-HHHHc------cccccCceeEEEecchhhhhc-CC----------
Q 006824 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLI-DMLKM------KALTMSRVTYLVLDEADRMFD-LG---------- 388 (630)
Q Consensus 327 ~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~-~~l~~------~~~~l~~i~~lVvDEah~~~~-~~---------- 388 (630)
+++.++.++.+..+....+ .|||+.+|..-|- ++|+. .....+.+.++||||+|.|+- ..
T Consensus 146 Lsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeArTPLiISg~~ 223 (870)
T CHL00122 146 LTVGLIQEGMSSEERKKNY--LKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPLIISGQS 223 (870)
T ss_pred CceeeeCCCCChHHHHHhc--CCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccCCCceeccCCC
Confidence 9999998877765443332 4899999986443 33322 122356789999999998621 00
Q ss_pred -----cHHHHHHHHhhcCC-------------------------------------------------------------
Q 006824 389 -----FEPQIRSIVGQIRP------------------------------------------------------------- 402 (630)
Q Consensus 389 -----~~~~v~~i~~~l~~------------------------------------------------------------- 402 (630)
....+..+...+..
T Consensus 224 ~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf~~d~dYiV 303 (870)
T CHL00122 224 KTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFKNVHYIV 303 (870)
T ss_pred ccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 00011111111110
Q ss_pred -------------------------------------------------------CCcEEEEeecccHHHHHHHHHHcCC
Q 006824 403 -------------------------------------------------------DRQTLLFSATMPRKVEKLAREILSD 427 (630)
Q Consensus 403 -------------------------------------------------------~~q~l~~SAT~~~~~~~l~~~~~~~ 427 (630)
...+.+||+|....-.++...|--
T Consensus 304 ~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY~l- 382 (870)
T CHL00122 304 RNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEFEKIYNL- 382 (870)
T ss_pred ECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHHHHHHHhCC-
Confidence 024555666655443333333322
Q ss_pred CeEEEEcccccccccceEEEEEcCCccccHHHHHHhccCC-CCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCH
Q 006824 428 PVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGM-IDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQ 506 (630)
Q Consensus 428 ~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~-~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~ 506 (630)
.+.+.+... ..........++.....|+..+++.+... ..+.||||.|.|....+.++..|.+.|++..+++..-.+
T Consensus 383 ~vv~IPtnk--p~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~ 460 (870)
T CHL00122 383 EVVCIPTHR--PMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPEN 460 (870)
T ss_pred CEEECCCCC--CccceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCcc
Confidence 222111111 11111111123334567888887776554 345589999999999999999999999999999986433
Q ss_pred HHHHHHHHHhhcC-CceEEEEcCCcccCCCCC
Q 006824 507 ASRMEILQKFKSG-VYHVLIATDVAARGLDIK 537 (630)
Q Consensus 507 ~~r~~~~~~F~~g-~~~VLvaT~~~~~Gldi~ 537 (630)
.+++..+-. ..| ...|.|||++++||.||.
T Consensus 461 ~~~EA~IIA-~AG~~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 461 VRRESEIVA-QAGRKGSITIATNMAGRGTDII 491 (870)
T ss_pred chhHHHHHH-hcCCCCcEEEeccccCCCcCee
Confidence 233332222 245 457999999999999985
No 136
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.79 E-value=2.7e-18 Score=186.08 Aligned_cols=159 Identities=19% Similarity=0.248 Sum_probs=111.5
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcC
Q 006824 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (630)
Q Consensus 247 ~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~ 326 (630)
.|..+|...+..+=.+..++++|||.+|||.+ ..-++..++.. .....+|+++||.+|+.|+...+........
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfi-sfY~iEKVLRe-----sD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t 584 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFI-SFYAIEKVLRE-----SDSDVVIYVAPTKALVNQVSANVYARFDTKT 584 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceec-cHHHHHHHHhh-----cCCCEEEEecchHHHhhhhhHHHHHhhccCc
Confidence 47789999999999999999999999999964 33344444432 3456699999999999999877665542211
Q ss_pred c-eEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHc---cccccCceeEEEecchhhhhcCCcHHHHHHHHhhcCC
Q 006824 327 I-RVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM---KALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRP 402 (630)
Q Consensus 327 ~-~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~---~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~ 402 (630)
+ +...+.|.....=++. .-+|.|+|+-|+.+..++-. ...+..++.++|+||+|.+..+.-.-....++..+
T Consensus 585 ~~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li-- 660 (1330)
T KOG0949|consen 585 FLRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI-- 660 (1330)
T ss_pred cccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc--
Confidence 1 2222222211111111 11499999999999988876 45567899999999999988765444445555544
Q ss_pred CCcEEEEeecccH
Q 006824 403 DRQTLLFSATMPR 415 (630)
Q Consensus 403 ~~q~l~~SAT~~~ 415 (630)
.+.++++|||+.+
T Consensus 661 ~CP~L~LSATigN 673 (1330)
T KOG0949|consen 661 PCPFLVLSATIGN 673 (1330)
T ss_pred CCCeeEEecccCC
Confidence 4679999999854
No 137
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.79 E-value=2.2e-17 Score=169.61 Aligned_cols=164 Identities=23% Similarity=0.344 Sum_probs=127.7
Q ss_pred CcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCccccHHHHHHhccCC-CCCCCEEEEccchhh
Q 006824 404 RQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGM-IDDGDVLVFASKKTT 482 (630)
Q Consensus 404 ~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~-~~~~~iLIF~~s~~~ 482 (630)
.|+|+.|||+.+.-..... ++-+.-.+.+.+..-+.+.. - ........|+..+... ..+.++||-+-|+.+
T Consensus 387 ~q~i~VSATPg~~E~e~s~---~~vveQiIRPTGLlDP~iev----R-p~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkm 458 (663)
T COG0556 387 PQTIYVSATPGDYELEQSG---GNVVEQIIRPTGLLDPEIEV----R-PTKGQVDDLLSEIRKRVAKNERVLVTTLTKKM 458 (663)
T ss_pred CCEEEEECCCChHHHHhcc---CceeEEeecCCCCCCCceee----e-cCCCcHHHHHHHHHHHHhcCCeEEEEeehHHH
Confidence 5999999998754221111 12233334444443333221 1 2335666677666553 346799999999999
Q ss_pred HHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEEEEeCC-----CCCHHHHHHH
Q 006824 483 VDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDI-----ARDMDMHVHR 557 (630)
Q Consensus 483 ~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~-----p~~~~~y~Qr 557 (630)
++.|.+||.+.|+++..+|++.+.-+|.+++..++.|.+.|||.-+.+-+|+|+|.|..|.++|. ..|-...+|.
T Consensus 459 AEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQt 538 (663)
T COG0556 459 AEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQT 538 (663)
T ss_pred HHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999875 4578899999
Q ss_pred hhhcccCCCCCeEEEEEecc
Q 006824 558 IGRTGRAGDKDGTAYTLVTQ 577 (630)
Q Consensus 558 iGR~gR~g~~~g~~~~l~~~ 577 (630)
|||+.|.- .|.++.+...
T Consensus 539 IGRAARN~--~GkvIlYAD~ 556 (663)
T COG0556 539 IGRAARNV--NGKVILYADK 556 (663)
T ss_pred HHHHhhcc--CCeEEEEchh
Confidence 99999975 6888888654
No 138
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.79 E-value=3.3e-19 Score=180.68 Aligned_cols=319 Identities=18% Similarity=0.249 Sum_probs=211.9
Q ss_pred CCCcHHHHHHHHHHHc-C--CCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHh
Q 006824 246 EKPTSIQCQALPIILS-G--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (630)
Q Consensus 246 ~~~~~~Q~~~i~~il~-g--~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 322 (630)
..++|+|..++..++. | |..|++.|+|+|||++-+-+ .+.+ +..+|+||.+-..+.||...+..|+
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTA-a~ti----------kK~clvLcts~VSVeQWkqQfk~ws 369 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTA-ACTI----------KKSCLVLCTSAVSVEQWKQQFKQWS 369 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeee-eeee----------cccEEEEecCccCHHHHHHHHHhhc
Confidence 5789999999999983 3 68999999999999874433 2333 4559999999999999999999998
Q ss_pred hhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHcc--------ccccCceeEEEecchhhhhcCCcHHHHH
Q 006824 323 KSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK--------ALTMSRVTYLVLDEADRMFDLGFEPQIR 394 (630)
Q Consensus 323 ~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~--------~~~l~~i~~lVvDEah~~~~~~~~~~v~ 394 (630)
....-.++.++...+.. ...++.|+|+|+.++..--++. .+.-..|.++|+||+|.+...-|...+.
T Consensus 370 ti~d~~i~rFTsd~Ke~-----~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVls 444 (776)
T KOG1123|consen 370 TIQDDQICRFTSDAKER-----FPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLS 444 (776)
T ss_pred ccCccceEEeecccccc-----CCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHH
Confidence 65555555555544332 3357999999998775422211 1223568999999999887776787777
Q ss_pred HHHhhcCCCCcEEEEeecccHHHHHHHH-HHcCCCeEEEEcccccc----------------------------cccceE
Q 006824 395 SIVGQIRPDRQTLLFSATMPRKVEKLAR-EILSDPVRVTVGEVGMA----------------------------NEDITQ 445 (630)
Q Consensus 395 ~i~~~l~~~~q~l~~SAT~~~~~~~l~~-~~~~~~~~i~~~~~~~~----------------------------~~~i~q 445 (630)
.+-.|++ +++|||+-++-.++.. .|+-.|..+........ +..-..
T Consensus 445 iv~aHcK-----LGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~ 519 (776)
T KOG1123|consen 445 IVQAHCK-----LGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRM 519 (776)
T ss_pred HHHHHhh-----ccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhh
Confidence 7777775 9999999765333221 11111211111000000 000011
Q ss_pred EEEEcCCccccHHH---HHHhccCCCCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcC-Cc
Q 006824 446 VVHVIPSDAEKLPW---LLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSG-VY 521 (630)
Q Consensus 446 ~~~~~~~~~~k~~~---l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g-~~ 521 (630)
...++ ...|+.. |+..-.+ .+.++|||..+.-....++-.|.+ -.|+|.++|.+|.++++.|+.+ ++
T Consensus 520 lLyvM--NP~KFraCqfLI~~HE~--RgDKiIVFsDnvfALk~YAikl~K-----pfIYG~Tsq~ERm~ILqnFq~n~~v 590 (776)
T KOG1123|consen 520 LLYVM--NPNKFRACQFLIKFHER--RGDKIIVFSDNVFALKEYAIKLGK-----PFIYGPTSQNERMKILQNFQTNPKV 590 (776)
T ss_pred eeeec--CcchhHHHHHHHHHHHh--cCCeEEEEeccHHHHHHHHHHcCC-----ceEECCCchhHHHHHHHhcccCCcc
Confidence 11111 2344433 3333222 467999999887777776665533 4789999999999999999865 57
Q ss_pred eEEEEcCCcccCCCCCCccEEEEeCCCC-CHHHHHHHhhhcccCC--CC---CeEEEEEeccccHHH--HHHHHHHHHHc
Q 006824 522 HVLIATDVAARGLDIKSIKSVVNFDIAR-DMDMHVHRIGRTGRAG--DK---DGTAYTLVTQKEARF--AGELVNSLIAA 593 (630)
Q Consensus 522 ~VLvaT~~~~~Gldi~~v~~VI~~~~p~-~~~~y~QriGR~gR~g--~~---~g~~~~l~~~~d~~~--~~~l~~~l~~~ 593 (630)
+.++-..++...+|+|.++++|...... |-..-.||+||..|+- +. ....|+|++..-... ..+-.++|-..
T Consensus 591 NTIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~YStKRQ~FLidQ 670 (776)
T KOG1123|consen 591 NTIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMYYSTKRQQFLIDQ 670 (776)
T ss_pred ceEEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHHhhhhhhhhhhhc
Confidence 7788888999999999999999877654 5667789999999864 11 234566666653332 23444555544
Q ss_pred C
Q 006824 594 G 594 (630)
Q Consensus 594 ~ 594 (630)
|
T Consensus 671 G 671 (776)
T KOG1123|consen 671 G 671 (776)
T ss_pred C
Confidence 3
No 139
>COG4889 Predicted helicase [General function prediction only]
Probab=99.78 E-value=1.4e-18 Score=185.80 Aligned_cols=350 Identities=19% Similarity=0.202 Sum_probs=210.8
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHHcC----CCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHH
Q 006824 235 QLMHAISKQGYEKPTSIQCQALPIILSG----RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTREL 310 (630)
Q Consensus 235 ~l~~~l~~~~~~~~~~~Q~~~i~~il~g----~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~L 310 (630)
++...+.-..-.+|+|+|++|+...+.| ...=+++.+|+|||.+.+ -+...+. ..++|+|+|+.+|
T Consensus 149 e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsL-kisEala---------~~~iL~LvPSIsL 218 (1518)
T COG4889 149 ELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSL-KISEALA---------AARILFLVPSISL 218 (1518)
T ss_pred ccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHH-HHHHHHh---------hhheEeecchHHH
Confidence 4444444445578999999999998866 123345569999997643 3333332 3569999999999
Q ss_pred HHHHHHHHHHHhhhcCceEEEEECCCChHHHHH-------------------------HHHcCCcEEEeChHHHHHHHHc
Q 006824 311 AHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK-------------------------ELKAGCEIVIATPGRLIDMLKM 365 (630)
Q Consensus 311 a~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~-------------------------~l~~~~dIiv~Tp~~L~~~l~~ 365 (630)
..|..++|..-. ...++...+++..+...... .-..+--||++|++.+..+-+.
T Consensus 219 LsQTlrew~~~~-~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eA 297 (1518)
T COG4889 219 LSQTLREWTAQK-ELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEA 297 (1518)
T ss_pred HHHHHHHHhhcc-CccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHH
Confidence 999887776543 23667776666543321110 0113467999999999998888
Q ss_pred cccccCceeEEEecchhhhhcCCcHHHHHHHHhhcC-----CCCcEEEEeecccHHH-----------------------
Q 006824 366 KALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIR-----PDRQTLLFSATMPRKV----------------------- 417 (630)
Q Consensus 366 ~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~-----~~~q~l~~SAT~~~~~----------------------- 417 (630)
....+..+++||+|||||-........=.+-+..+. +..+.+.||||+.---
T Consensus 298 Qe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~f 377 (1518)
T COG4889 298 QEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTF 377 (1518)
T ss_pred HHcCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhh
Confidence 888899999999999998543211110011111111 1123467788863110
Q ss_pred ----------HHHHHHHcCCCeEEEEcccccccccceEEEEEcCCc------cccHHHHHHhccC-CC---------C--
Q 006824 418 ----------EKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSD------AEKLPWLLEKLPG-MI---------D-- 469 (630)
Q Consensus 418 ----------~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~------~~k~~~l~~~l~~-~~---------~-- 469 (630)
+...+.++.+...+...-.........|....-+.. ..|+.-..+-|.. .. .
T Consensus 378 Geef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ 457 (1518)
T COG4889 378 GEEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADT 457 (1518)
T ss_pred chhhhcccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCc
Confidence 112233333332222111111111111111111110 0111111111111 00 0
Q ss_pred --CCCEEEEccchhhHHHHHHHHHh-------------CCC--cEEEEeCCCCHHHHHHHHHH---hhcCCceEEEEcCC
Q 006824 470 --DGDVLVFASKKTTVDEIESQLAQ-------------KGF--KAAALHGDKDQASRMEILQK---FKSGVYHVLIATDV 529 (630)
Q Consensus 470 --~~~iLIF~~s~~~~~~l~~~L~~-------------~~~--~~~~ihg~~~~~~r~~~~~~---F~~g~~~VLvaT~~ 529 (630)
..+.|-||.+......++..|.+ .++ .+.-+.|.|...+|...+.. |...+++||--..+
T Consensus 458 ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRc 537 (1518)
T COG4889 458 APMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARC 537 (1518)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchh
Confidence 12468899998888777766543 133 45556689999988555443 34567889988899
Q ss_pred cccCCCCCCccEEEEeCCCCCHHHHHHHhhhcccCC--CCCeEEEEEe-------------ccccHHHHHHHHHHHHHcC
Q 006824 530 AARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAG--DKDGTAYTLV-------------TQKEARFAGELVNSLIAAG 594 (630)
Q Consensus 530 ~~~Gldi~~v~~VI~~~~p~~~~~y~QriGR~gR~g--~~~g~~~~l~-------------~~~d~~~~~~l~~~l~~~~ 594 (630)
+++|+|+|.++.||++++..++.+.+|.+||+-|.. .+.|..+.=+ ...+.+.++++++.|....
T Consensus 538 LSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPIalpegi~p~~~l~~n~nFk~VWqVlnALRShD 617 (1518)
T COG4889 538 LSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPIALPEGIKPLDELVNNTNFKNVWQVLKALRSHD 617 (1518)
T ss_pred hhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEeccCCCCCchHHHhcCccHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999965 2334443322 1235677888899886665
Q ss_pred C
Q 006824 595 Q 595 (630)
Q Consensus 595 ~ 595 (630)
.
T Consensus 618 ~ 618 (1518)
T COG4889 618 E 618 (1518)
T ss_pred H
Confidence 4
No 140
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.76 E-value=2.9e-18 Score=186.94 Aligned_cols=313 Identities=20% Similarity=0.317 Sum_probs=204.2
Q ss_pred CCCcHHHHHHHHHHH----cCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHH
Q 006824 246 EKPTSIQCQALPIIL----SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (630)
Q Consensus 246 ~~~~~~Q~~~i~~il----~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 321 (630)
..+.++|..++.|+. +.-+.|+..+||.|||.+ .+.++.+++... ...||. |||||+..|.+ |..++.+|
T Consensus 393 G~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQ-tIsLitYLmE~K---~~~GP~-LvivPlstL~N-W~~Ef~kW 466 (1157)
T KOG0386|consen 393 GELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQ-TISLITYLMEHK---QMQGPF-LIIVPLSTLVN-WSSEFPKW 466 (1157)
T ss_pred CCCchhhhhhhHHHhhccCCCcccccchhcccchHHH-HHHHHHHHHHHc---ccCCCe-EEeccccccCC-chhhcccc
Confidence 478899999999976 234789999999999987 455666666542 345775 89999999985 89999999
Q ss_pred hhhcCceEEEEECCCChHHHH-HH-HHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCcHHHHHHHHh-
Q 006824 322 AKSHGIRVSAVYGGMSKLDQF-KE-LKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVG- 398 (630)
Q Consensus 322 ~~~~~~~~~~~~gg~~~~~~~-~~-l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~- 398 (630)
+. .+......|.......+ .. .....+|+++|++.+.. .+..+.--+|.|+||||.|+|.+. ...+...++
T Consensus 467 aP--Sv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik--dk~lLsKI~W~yMIIDEGHRmKNa--~~KLt~~L~t 540 (1157)
T KOG0386|consen 467 AP--SVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK--DKALLSKISWKYMIIDEGHRMKNA--ICKLTDTLNT 540 (1157)
T ss_pred cc--ceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC--CHHHHhccCCcceeecccccccch--hhHHHHHhhc
Confidence 76 45555444432221111 11 12458999999988765 222222336789999999998543 112222222
Q ss_pred hcCCCCcEEEEeecccHH---------------------------------------------------HHHH-------
Q 006824 399 QIRPDRQTLLFSATMPRK---------------------------------------------------VEKL------- 420 (630)
Q Consensus 399 ~l~~~~q~l~~SAT~~~~---------------------------------------------------~~~l------- 420 (630)
++.. ..-+++|+|+..+ +...
T Consensus 541 ~y~~-q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLR 619 (1157)
T KOG0386|consen 541 HYRA-QRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLR 619 (1157)
T ss_pred cccc-hhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHH
Confidence 2221 1223334443100 0000
Q ss_pred -----------------------------------------------------------HHHHcCCCeEEEEcccccccc
Q 006824 421 -----------------------------------------------------------AREILSDPVRVTVGEVGMANE 441 (630)
Q Consensus 421 -----------------------------------------------------------~~~~~~~~~~i~~~~~~~~~~ 441 (630)
.+++|..|..+.-. ..
T Consensus 620 RlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~v-----e~ 694 (1157)
T KOG0386|consen 620 RLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANV-----EN 694 (1157)
T ss_pred hhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhh-----cc
Confidence 01111111100000 00
Q ss_pred cceEEEEE--cCCccccHHHHHHhccCCC-CCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhc
Q 006824 442 DITQVVHV--IPSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKS 518 (630)
Q Consensus 442 ~i~q~~~~--~~~~~~k~~~l~~~l~~~~-~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~ 518 (630)
.+...+.. +-....|+..|-..|.++. .++++|.||....-...+..||.-.++....+.|.+...+|-..+..|+.
T Consensus 695 ~~~~~~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~ 774 (1157)
T KOG0386|consen 695 SYTLHYDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNA 774 (1157)
T ss_pred ccccccChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcC
Confidence 00000000 0012345555555554442 36799999999999999999999999999999999999999999999987
Q ss_pred CC---ceEEEEcCCcccCCCCCCccEEEEeCCCCCHHHHHHHhhhcccCCCC-CeEEEEEec
Q 006824 519 GV---YHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDK-DGTAYTLVT 576 (630)
Q Consensus 519 g~---~~VLvaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~QriGR~gR~g~~-~g~~~~l~~ 576 (630)
-. ..+|++|.+.+.|+|+..+++||+||..|||....|+-.|++|.|++ ...++.+++
T Consensus 775 Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~t 836 (1157)
T KOG0386|consen 775 PDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLIT 836 (1157)
T ss_pred CCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeeh
Confidence 54 45789999999999999999999999999999999999999999943 334444444
No 141
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.74 E-value=3.7e-16 Score=172.40 Aligned_cols=275 Identities=19% Similarity=0.202 Sum_probs=175.6
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcC
Q 006824 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (630)
Q Consensus 247 ~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~ 326 (630)
.|++.|.-+- +.-.+.-|..+.||-|||+++.+|++...+. |..|-||+++..||..-++++..++..+|
T Consensus 85 r~ydVQliGg--l~Lh~G~IAEM~TGEGKTL~atlpaylnAL~--------GkgVhVVTvNdYLA~RDae~m~~vy~~LG 154 (939)
T PRK12902 85 RHFDVQLIGG--MVLHEGQIAEMKTGEGKTLVATLPSYLNALT--------GKGVHVVTVNDYLARRDAEWMGQVHRFLG 154 (939)
T ss_pred CcchhHHHhh--hhhcCCceeeecCCCChhHHHHHHHHHHhhc--------CCCeEEEeCCHHHHHhHHHHHHHHHHHhC
Confidence 3555555444 4445567999999999999999998876554 56699999999999999999999999999
Q ss_pred ceEEEEECCCChHHHHHHHHcCCcEEEeChHHH-----HHHHHc--cccccCceeEEEecchhhhh-cCC----------
Q 006824 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRL-----IDMLKM--KALTMSRVTYLVLDEADRMF-DLG---------- 388 (630)
Q Consensus 327 ~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L-----~~~l~~--~~~~l~~i~~lVvDEah~~~-~~~---------- 388 (630)
++|.++.++....+.. ..-.|||+++|+..| .+.+.. .....+.+.+.||||+|.|+ |..
T Consensus 155 Ltvg~i~~~~~~~err--~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILIDEArTPLIISg~~ 232 (939)
T PRK12902 155 LSVGLIQQDMSPEERK--KNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILIDEARTPLIISGQV 232 (939)
T ss_pred CeEEEECCCCChHHHH--HhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccceeeccCCCcccccCCC
Confidence 9999998776554432 223599999999877 443332 22345778999999999863 100
Q ss_pred -----cHHHHHHHHhhcCC--------------C----------------------------------------------
Q 006824 389 -----FEPQIRSIVGQIRP--------------D---------------------------------------------- 403 (630)
Q Consensus 389 -----~~~~v~~i~~~l~~--------------~---------------------------------------------- 403 (630)
.......+...+.. .
T Consensus 233 ~~~~~~y~~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~AL~A~~lf~~ 312 (939)
T PRK12902 233 ERPQEKYQKAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFNALKAKELFIK 312 (939)
T ss_pred ccchHHHHHHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHHHHHHHHHHhc
Confidence 01111111111111 1
Q ss_pred --------------------------------------------------------------CcEEEEeecccHHHHHHH
Q 006824 404 --------------------------------------------------------------RQTLLFSATMPRKVEKLA 421 (630)
Q Consensus 404 --------------------------------------------------------------~q~l~~SAT~~~~~~~l~ 421 (630)
.++.+||+|...+-.++.
T Consensus 313 d~dYiV~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGTa~te~~Ef~ 392 (939)
T PRK12902 313 DVNYIVRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGTAKTEEVEFE 392 (939)
T ss_pred CCeEEEECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCHHHHHHHH
Confidence 133334444332222222
Q ss_pred HHHcCCCeEEEEcccccccccceEEEEEcCCccccHHHHHHhccCCC-CCCCEEEEccchhhHHHHHHHHHhCCCcEEEE
Q 006824 422 REILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAAL 500 (630)
Q Consensus 422 ~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~-~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~i 500 (630)
..|--+ +...... .........-.++.....|+..+++.+.... .+.||||.+.|....+.++..|.+.|++..++
T Consensus 393 ~iY~l~-Vv~IPTn--kP~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vL 469 (939)
T PRK12902 393 KTYKLE-VTVIPTN--RPRRRQDWPDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLL 469 (939)
T ss_pred HHhCCc-EEEcCCC--CCeeeecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchhee
Confidence 222111 1111110 0011111111223344678888887776553 45599999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHHhhcCC-ceEEEEcCCcccCCCCC
Q 006824 501 HGDKDQASRMEILQKFKSGV-YHVLIATDVAARGLDIK 537 (630)
Q Consensus 501 hg~~~~~~r~~~~~~F~~g~-~~VLvaT~~~~~Gldi~ 537 (630)
+..-.+.+++..+-. ..|+ ..|-|||++++||-||.
T Consensus 470 NAk~~~~~~EA~IIa-~AG~~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 470 NAKPENVEREAEIVA-QAGRKGAVTIATNMAGRGTDII 506 (939)
T ss_pred eCCCcchHhHHHHHH-hcCCCCcEEEeccCCCCCcCEe
Confidence 986333333333222 2454 56999999999999986
No 142
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.73 E-value=6.3e-16 Score=180.28 Aligned_cols=123 Identities=18% Similarity=0.208 Sum_probs=90.0
Q ss_pred CCCCEEEEccchhhHHHHHHHHHhCCC--cEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCC--ccEEEE
Q 006824 469 DDGDVLVFASKKTTVDEIESQLAQKGF--KAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKS--IKSVVN 544 (630)
Q Consensus 469 ~~~~iLIF~~s~~~~~~l~~~L~~~~~--~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~--v~~VI~ 544 (630)
..|++|||++|+.....++..|..... .+..+.-+++...|..+++.|+.++..||++|..+.+|+|+|+ +++||+
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI 830 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVI 830 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEE
Confidence 367999999999999999999976422 1223333444456789999999999999999999999999998 588999
Q ss_pred eCCCC-CH-----------------------------HHHHHHhhhcccCCCCCeEEEEEeccc-cHHHHHHHHHHHH
Q 006824 545 FDIAR-DM-----------------------------DMHVHRIGRTGRAGDKDGTAYTLVTQK-EARFAGELVNSLI 591 (630)
Q Consensus 545 ~~~p~-~~-----------------------------~~y~QriGR~gR~g~~~g~~~~l~~~~-d~~~~~~l~~~l~ 591 (630)
..+|. +| ..+.|.+||+-|..+..|.++++-..- ...+-..+.+.|.
T Consensus 831 ~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~~~k~Yg~~~l~sLP 908 (928)
T PRK08074 831 VRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRLTTTSYGKYFLESLP 908 (928)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCccccchHHHHHHHhCC
Confidence 88664 22 123599999999986567655544432 4455566666663
No 143
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.73 E-value=5.3e-15 Score=162.28 Aligned_cols=114 Identities=19% Similarity=0.216 Sum_probs=83.7
Q ss_pred CCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhc----CCceEEEEcCCcccCCCC--------
Q 006824 469 DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKS----GVYHVLIATDVAARGLDI-------- 536 (630)
Q Consensus 469 ~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~----g~~~VLvaT~~~~~Gldi-------- 536 (630)
..|++||.+.|+..+..++..|...---...+.|..+ .+..+++.|+. |...||++|..+.+|||+
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~ 546 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPD 546 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCC
Confidence 4789999999999999999999764223355666443 35667888887 478999999999999999
Q ss_pred CC--ccEEEEeCCCCCH-------------------------HHHHHHhhhcccCCCC--CeEEEEEeccccHHHHH
Q 006824 537 KS--IKSVVNFDIARDM-------------------------DMHVHRIGRTGRAGDK--DGTAYTLVTQKEARFAG 584 (630)
Q Consensus 537 ~~--v~~VI~~~~p~~~-------------------------~~y~QriGR~gR~g~~--~g~~~~l~~~~d~~~~~ 584 (630)
|+ +++||+..+|..+ ..+.|-+||.-|..+. .|.++++-..-...+-.
T Consensus 547 ~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R~~~~yg~ 623 (636)
T TIGR03117 547 KDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGRIHWPYME 623 (636)
T ss_pred CCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCCCCchhHH
Confidence 34 8999998777321 1345999999998855 67777666553333333
No 144
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.73 E-value=4.9e-17 Score=145.45 Aligned_cols=119 Identities=45% Similarity=0.718 Sum_probs=109.8
Q ss_pred ccHHHHHHhccCCC-CCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccC
Q 006824 455 EKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARG 533 (630)
Q Consensus 455 ~k~~~l~~~l~~~~-~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~G 533 (630)
.|...+...+.... ..+++||||++...++.++.+|...+..+..+||+++..+|..++..|++|...||++|..+++|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G 91 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARG 91 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcC
Confidence 68888888777654 46799999999999999999999989999999999999999999999999999999999999999
Q ss_pred CCCCCccEEEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEE
Q 006824 534 LDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTL 574 (630)
Q Consensus 534 ldi~~v~~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l 574 (630)
+|+|++++||++++|+++..+.|++||++|.|+ .|.++++
T Consensus 92 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~-~~~~~~~ 131 (131)
T cd00079 92 IDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQ-KGTAILL 131 (131)
T ss_pred cChhhCCEEEEeCCCCCHHHheecccccccCCC-CceEEeC
Confidence 999999999999999999999999999999994 6777654
No 145
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.70 E-value=1.9e-16 Score=162.85 Aligned_cols=345 Identities=12% Similarity=0.061 Sum_probs=229.9
Q ss_pred HHHHcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHH
Q 006824 239 AISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLET 318 (630)
Q Consensus 239 ~l~~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~ 318 (630)
.+.++.-.....+|.+++..+.+|+++++.-.|.+||.++|.+.+......-+ ....+++.|+.+++......+
T Consensus 278 ~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~------~s~~~~~~~~~~~~~~~~~~~ 351 (1034)
T KOG4150|consen 278 LLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCH------ATNSLLPSEMVEHLRNGSKGQ 351 (1034)
T ss_pred HHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCc------ccceecchhHHHHhhccCCce
Confidence 33444556788999999999999999999999999999999998887766543 334788899999986543211
Q ss_pred HHHh---hhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccc----cCceeEEEecchhhhhcCCcHH
Q 006824 319 KKFA---KSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALT----MSRVTYLVLDEADRMFDLGFEP 391 (630)
Q Consensus 319 ~~~~---~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~----l~~i~~lVvDEah~~~~~~~~~ 391 (630)
.-.. +...--++-.+.|.+......-.+.|..++++.|......+-.+... +-...++++||+|..... |..
T Consensus 352 ~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~-~~~ 430 (1034)
T KOG4150|consen 352 VVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFP-TKA 430 (1034)
T ss_pred EEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecc-hhh
Confidence 1000 00112334456666666666667788999999999887655433222 223467899999975432 333
Q ss_pred HH----HHHHhhc-----CCCCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCC-----c---c
Q 006824 392 QI----RSIVGQI-----RPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPS-----D---A 454 (630)
Q Consensus 392 ~v----~~i~~~l-----~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~-----~---~ 454 (630)
++ +.++..+ +.+.|++-.|||+...++....-+.-+-+.+.. .......-...+.+-+. . .
T Consensus 431 ~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~--~DGSPs~~K~~V~WNP~~~P~~~~~~~ 508 (1034)
T KOG4150|consen 431 LAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVT--IDGSPSSEKLFVLWNPSAPPTSKSEKS 508 (1034)
T ss_pred HHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEE--ecCCCCccceEEEeCCCCCCcchhhhh
Confidence 33 3333322 356799999999987766544444333332221 11222233344444332 1 1
Q ss_pred ccHHHHHHhccCCC-CCCCEEEEccchhhHHHHHHHHH----hCC----CcEEEEeCCCCHHHHHHHHHHhhcCCceEEE
Q 006824 455 EKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLA----QKG----FKAAALHGDKDQASRMEILQKFKSGVYHVLI 525 (630)
Q Consensus 455 ~k~~~l~~~l~~~~-~~~~iLIF~~s~~~~~~l~~~L~----~~~----~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLv 525 (630)
.+......++.+.. .+-++|-||+++.-|+.+....+ +.+ -.+..+.||...++|..+....-.|+..-+|
T Consensus 509 ~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giI 588 (1034)
T KOG4150|consen 509 SKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGII 588 (1034)
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEE
Confidence 12222222222222 34589999999999987755443 322 2356788999999999999999999999999
Q ss_pred EcCCcccCCCCCCccEEEEeCCCCCHHHHHHHhhhcccCCCCCeEEE--EEeccccHHHHHHHHHHHHHc
Q 006824 526 ATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAY--TLVTQKEARFAGELVNSLIAA 593 (630)
Q Consensus 526 aT~~~~~Gldi~~v~~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~--~l~~~~d~~~~~~l~~~l~~~ 593 (630)
+|++++-|+||.+++.|++.++|.|+..+.|..||+||.+ ++..++ .+..+-|..++..-...+...
T Consensus 589 aTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRN-k~SLavyva~~~PVDQ~Y~~HP~~l~~~p 657 (1034)
T KOG4150|consen 589 ATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRN-KPSLAVYVAFLGPVDQYYMSHPDKLFGSP 657 (1034)
T ss_pred ecchhhhccccccceeEEEccCchhHHHHHHHhccccccC-CCceEEEEEeccchhhHhhcCcHHHhCCC
Confidence 9999999999999999999999999999999999999998 444433 333455555554444444333
No 146
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.70 E-value=5.9e-17 Score=131.08 Aligned_cols=78 Identities=44% Similarity=0.695 Sum_probs=75.6
Q ss_pred HHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEEEEeCCCCCHHHHHHHhhhcccCC
Q 006824 488 SQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAG 565 (630)
Q Consensus 488 ~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~QriGR~gR~g 565 (630)
++|...++.+..+||++++.+|..+++.|++|...|||||+++++|+|+|.+++||++++|+|+..|.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 367888999999999999999999999999999999999999999999999999999999999999999999999986
No 147
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.69 E-value=1.7e-15 Score=156.29 Aligned_cols=277 Identities=22% Similarity=0.306 Sum_probs=182.1
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHH
Q 006824 265 IIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE 344 (630)
Q Consensus 265 ~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~ 344 (630)
++-+|||.||||.- +|.++.. ....++.-|.|-||..+++.+.+. |+.+..++|.........
T Consensus 194 i~H~GPTNSGKTy~----ALqrl~~--------aksGvycGPLrLLA~EV~~r~na~----gipCdL~TGeE~~~~~~~- 256 (700)
T KOG0953|consen 194 IMHVGPTNSGKTYR----ALQRLKS--------AKSGVYCGPLRLLAHEVYDRLNAL----GIPCDLLTGEERRFVLDN- 256 (700)
T ss_pred EEEeCCCCCchhHH----HHHHHhh--------hccceecchHHHHHHHHHHHhhhc----CCCccccccceeeecCCC-
Confidence 67789999999954 4555532 344799999999999999888877 888888888655443311
Q ss_pred HHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCcHHHH-HHHHhhcCCCCcEEEEeecccHHHHHHHHH
Q 006824 345 LKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQI-RSIVGQIRPDRQTLLFSATMPRKVEKLARE 423 (630)
Q Consensus 345 l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v-~~i~~~l~~~~q~l~~SAT~~~~~~~l~~~ 423 (630)
...+..+-||.++..- -..+++.||||++.|.+.+.+..+ +.++.......++. +- +.+-.+++.
T Consensus 257 -~~~a~hvScTVEM~sv--------~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLC---Ge--psvldlV~~ 322 (700)
T KOG0953|consen 257 -GNPAQHVSCTVEMVSV--------NTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLC---GE--PSVLDLVRK 322 (700)
T ss_pred -CCcccceEEEEEEeec--------CCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhcc---CC--chHHHHHHH
Confidence 1125566677643311 236899999999999886644333 34433332222222 21 234456665
Q ss_pred HcCCC-eEEEEcccccccccceEEEEEcCCccccHHHHHHhccCCCCCCCEEEEccchhhHHHHHHHHHhCCCc-EEEEe
Q 006824 424 ILSDP-VRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFK-AAALH 501 (630)
Q Consensus 424 ~~~~~-~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~~~~-~~~ih 501 (630)
++... ..+.+ ..+..+. +-.-...++..+... ..|.+ |.|-|+...-.+...+.+.|.. +++|+
T Consensus 323 i~k~TGd~vev-----------~~YeRl~-pL~v~~~~~~sl~nl-k~GDC-vV~FSkk~I~~~k~kIE~~g~~k~aVIY 388 (700)
T KOG0953|consen 323 ILKMTGDDVEV-----------REYERLS-PLVVEETALGSLSNL-KPGDC-VVAFSKKDIFTVKKKIEKAGNHKCAVIY 388 (700)
T ss_pred HHhhcCCeeEE-----------EeecccC-cceehhhhhhhhccC-CCCCe-EEEeehhhHHHHHHHHHHhcCcceEEEe
Confidence 54321 01111 1111111 111112334444443 34444 4566788888899999888765 99999
Q ss_pred CCCCHHHHHHHHHHhhc--CCceEEEEcCCcccCCCCCCccEEEEeCCC---------CCHHHHHHHhhhcccCCCC--C
Q 006824 502 GDKDQASRMEILQKFKS--GVYHVLIATDVAARGLDIKSIKSVVNFDIA---------RDMDMHVHRIGRTGRAGDK--D 568 (630)
Q Consensus 502 g~~~~~~r~~~~~~F~~--g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p---------~~~~~y~QriGR~gR~g~~--~ 568 (630)
|+++++.|.+--..|++ ++++|||||++.++|+|+ +++.||+|++- -......|..||+||.|.+ .
T Consensus 389 GsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~ 467 (700)
T KOG0953|consen 389 GSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQ 467 (700)
T ss_pred cCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcC
Confidence 99999999999999988 899999999999999999 78999998864 2456778999999999832 4
Q ss_pred eEEEEEeccccHHHHHHHHH
Q 006824 569 GTAYTLVTQKEARFAGELVN 588 (630)
Q Consensus 569 g~~~~l~~~~d~~~~~~l~~ 588 (630)
|.+.+|- .+|...+.++++
T Consensus 468 G~vTtl~-~eDL~~L~~~l~ 486 (700)
T KOG0953|consen 468 GEVTTLH-SEDLKLLKRILK 486 (700)
T ss_pred ceEEEee-HhhHHHHHHHHh
Confidence 5555554 456565555544
No 148
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.69 E-value=1e-15 Score=138.14 Aligned_cols=144 Identities=40% Similarity=0.548 Sum_probs=112.9
Q ss_pred CCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHH
Q 006824 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQF 342 (630)
Q Consensus 263 ~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 342 (630)
+++++.++||+|||.+++..+...... ...++++|++|++.++.|+...+..+... +..+..+.++.......
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~------~~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 73 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS------LKGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQE 73 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc------ccCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHH
Confidence 468999999999999877777666533 23577999999999999999999888765 67777788877766666
Q ss_pred HHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCcHHHHHHHHhhcCCCCcEEEEeecc
Q 006824 343 KELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATM 413 (630)
Q Consensus 343 ~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q~l~~SAT~ 413 (630)
.....+++|+++|++.+...+.........++++|+||+|.+....+...............+++++|||+
T Consensus 74 ~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 74 KLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 56667899999999999888776555566889999999999887654444333344445778899999996
No 149
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.69 E-value=9.1e-16 Score=155.63 Aligned_cols=327 Identities=18% Similarity=0.268 Sum_probs=198.5
Q ss_pred CCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEE
Q 006824 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVI 303 (630)
Q Consensus 224 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLi 303 (630)
++.|...+++++..+.+++..--.....+...+..+.+++-+++.|.||||||.+ +|-+..-+..+. ...+.-
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQ--iPq~~~~~~~~~-----~~~v~C 96 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQ--IPQFVLEYELSH-----LTGVAC 96 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCcccc--CcHHHHHHHHhh-----ccceee
Confidence 7788888899998888877644444455556667778889999999999999965 333322221111 122555
Q ss_pred EcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhh
Q 006824 304 CAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR 383 (630)
Q Consensus 304 l~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~ 383 (630)
.-|.|..|.+++.... ...++...--.|..-..+.... ...-+-+||-++|.+-.... -.+.++++||+||||.
T Consensus 97 TQprrvaamsva~RVa---dEMDv~lG~EVGysIrfEdC~~--~~T~Lky~tDgmLlrEams~-p~l~~y~viiLDeahE 170 (699)
T KOG0925|consen 97 TQPRRVAAMSVAQRVA---DEMDVTLGEEVGYSIRFEDCTS--PNTLLKYCTDGMLLREAMSD-PLLGRYGVIILDEAHE 170 (699)
T ss_pred cCchHHHHHHHHHHHH---HHhccccchhccccccccccCC--hhHHHHHhcchHHHHHHhhC-cccccccEEEechhhh
Confidence 5688888887764433 3334433333333222222000 00012235666555443333 3478999999999995
Q ss_pred h-hcCC-cHHHHHHHHhhcCCCCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCccccHHHHH
Q 006824 384 M-FDLG-FEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLL 461 (630)
Q Consensus 384 ~-~~~~-~~~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~ 461 (630)
= +..+ ..-.++.++.. +++.++|.+|||+... -+..|+.++-.+.+.. ...+.. +..-....+.+...+
T Consensus 171 RtlATDiLmGllk~v~~~-rpdLk~vvmSatl~a~---Kfq~yf~n~Pll~vpg----~~PvEi-~Yt~e~erDylEaai 241 (699)
T KOG0925|consen 171 RTLATDILMGLLKEVVRN-RPDLKLVVMSATLDAE---KFQRYFGNAPLLAVPG----THPVEI-FYTPEPERDYLEAAI 241 (699)
T ss_pred hhHHHHHHHHHHHHHHhh-CCCceEEEeecccchH---HHHHHhCCCCeeecCC----CCceEE-EecCCCChhHHHHHH
Confidence 1 1111 01122222222 4789999999998533 4556666655555432 122222 222222233333333
Q ss_pred Hhcc---CCCCCCCEEEEccchhhHHHHHHHHHhC---------CCcEEEEeCCCCHHHHHHHHHHhh---cC--CceEE
Q 006824 462 EKLP---GMIDDGDVLVFASKKTTVDEIESQLAQK---------GFKAAALHGDKDQASRMEILQKFK---SG--VYHVL 524 (630)
Q Consensus 462 ~~l~---~~~~~~~iLIF~~s~~~~~~l~~~L~~~---------~~~~~~ihg~~~~~~r~~~~~~F~---~g--~~~VL 524 (630)
..+. .....|.+|||....++.+..++.+... ...+..+| +.+..++++-.. +| ..+|+
T Consensus 242 rtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvV 317 (699)
T KOG0925|consen 242 RTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVV 317 (699)
T ss_pred HHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEE
Confidence 3222 2234789999999999999888888743 25677777 333333333222 12 25799
Q ss_pred EEcCCcccCCCCCCccEEEEeCC------------------CCCHHHHHHHhhhcccCCCCCeEEEEEeccc
Q 006824 525 IATDVAARGLDIKSIKSVVNFDI------------------ARDMDMHVHRIGRTGRAGDKDGTAYTLVTQK 578 (630)
Q Consensus 525 vaT~~~~~Gldi~~v~~VI~~~~------------------p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~ 578 (630)
|+|.++...+.|+++.+||.-++ |-|...-.||.||+||.- +|.|+.+++++
T Consensus 318 vstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~--pGkcfrLYte~ 387 (699)
T KOG0925|consen 318 VSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR--PGKCFRLYTEE 387 (699)
T ss_pred EEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCC--CCceEEeecHH
Confidence 99999999999999999997443 345566779999999975 89999999865
No 150
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.67 E-value=1.7e-15 Score=159.73 Aligned_cols=109 Identities=17% Similarity=0.292 Sum_probs=91.2
Q ss_pred CCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhc--CCceE-EEEcCCcccCCCCCCccEEEEeC
Q 006824 470 DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKS--GVYHV-LIATDVAARGLDIKSIKSVVNFD 546 (630)
Q Consensus 470 ~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~--g~~~V-LvaT~~~~~Gldi~~v~~VI~~~ 546 (630)
..+++|...=......++..|...|+.+..+||.....+|..+++.|+. |..+| ||+-.+.+.|+|+-+.+|+|++|
T Consensus 746 keK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvD 825 (901)
T KOG4439|consen 746 KEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVD 825 (901)
T ss_pred cceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEe
Confidence 4567777777777788889999999999999999999999999999964 44555 45668888999999999999999
Q ss_pred CCCCHHHHHHHhhhcccCCCCCe-EEEEEeccc
Q 006824 547 IARDMDMHVHRIGRTGRAGDKDG-TAYTLVTQK 578 (630)
Q Consensus 547 ~p~~~~~y~QriGR~gR~g~~~g-~~~~l~~~~ 578 (630)
+.|||.--.|.+.|..|.|++.. ..+.|++..
T Consensus 826 lHWNPaLEqQAcDRIYR~GQkK~V~IhR~~~~g 858 (901)
T KOG4439|consen 826 LHWNPALEQQACDRIYRMGQKKDVFIHRLMCKG 858 (901)
T ss_pred cccCHHHHHHHHHHHHHhcccCceEEEEEEecC
Confidence 99999999999999999995544 444555554
No 151
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.63 E-value=7.7e-15 Score=158.56 Aligned_cols=120 Identities=26% Similarity=0.318 Sum_probs=98.4
Q ss_pred HHHHHhccCCCC-CCCEEEEccchhhHHHHHHHHHhC----------------------CCcEEEEeCCCCHHHHHHHHH
Q 006824 458 PWLLEKLPGMID-DGDVLVFASKKTTVDEIESQLAQK----------------------GFKAAALHGDKDQASRMEILQ 514 (630)
Q Consensus 458 ~~l~~~l~~~~~-~~~iLIF~~s~~~~~~l~~~L~~~----------------------~~~~~~ihg~~~~~~r~~~~~ 514 (630)
..|+++|..... +.+.|||.++....+.|..+|... |.....|.|..+..+|.....
T Consensus 1129 iLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~ 1208 (1567)
T KOG1015|consen 1129 ILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAE 1208 (1567)
T ss_pred ehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHH
Confidence 344444443322 458999999999999999999752 556889999999999999999
Q ss_pred HhhcCC----ceEEEEcCCcccCCCCCCccEEEEeCCCCCHHHHHHHhhhcccCCC-CCeEEEEEecc
Q 006824 515 KFKSGV----YHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGD-KDGTAYTLVTQ 577 (630)
Q Consensus 515 ~F~~g~----~~VLvaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~QriGR~gR~g~-~~g~~~~l~~~ 577 (630)
.|++-. .-.||+|.+++-|+|+-.++.||+||..|||.--+|.|=|+.|.|+ ++..+|.|+..
T Consensus 1209 ~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAq 1276 (1567)
T KOG1015|consen 1209 EFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQ 1276 (1567)
T ss_pred HhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhc
Confidence 998742 2379999999999999999999999999999999999999999994 45566667654
No 152
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.63 E-value=4e-14 Score=161.32 Aligned_cols=107 Identities=21% Similarity=0.298 Sum_probs=82.0
Q ss_pred CCCEEEEccchhhHHHHHHHHHhCCCc-EEEEeCCCCHHHHHHHHHHhhcCCc-eEEEEcCCcccCCCCCC--ccEEEEe
Q 006824 470 DGDVLVFASKKTTVDEIESQLAQKGFK-AAALHGDKDQASRMEILQKFKSGVY-HVLIATDVAARGLDIKS--IKSVVNF 545 (630)
Q Consensus 470 ~~~iLIF~~s~~~~~~l~~~L~~~~~~-~~~ihg~~~~~~r~~~~~~F~~g~~-~VLvaT~~~~~Gldi~~--v~~VI~~ 545 (630)
++++|||++|+..+..+...|...... ....+|..+ +..+++.|..+.- .++|+|..+.+|+|+++ .+.||+.
T Consensus 479 ~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~ 555 (654)
T COG1199 479 PGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVIV 555 (654)
T ss_pred CCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEEE
Confidence 569999999999999999999876542 445555444 4478888877655 89999999999999998 5889998
Q ss_pred CCCCC------------------------------HHHHHHHhhhcccCCCCCeEEEEEecccc
Q 006824 546 DIARD------------------------------MDMHVHRIGRTGRAGDKDGTAYTLVTQKE 579 (630)
Q Consensus 546 ~~p~~------------------------------~~~y~QriGR~gR~g~~~g~~~~l~~~~d 579 (630)
+.|.- .....|.+||+-|.-+..|.++++-..-.
T Consensus 556 ~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~R~~ 619 (654)
T COG1199 556 GLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDKRYA 619 (654)
T ss_pred ecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecccch
Confidence 87752 22346999999997655677666655433
No 153
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.63 E-value=2.7e-14 Score=159.29 Aligned_cols=125 Identities=21% Similarity=0.284 Sum_probs=101.1
Q ss_pred CccccHHHHHHhccCCC-CCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcC-CceEEEEcCC
Q 006824 452 SDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSG-VYHVLIATDV 529 (630)
Q Consensus 452 ~~~~k~~~l~~~l~~~~-~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g-~~~VLvaT~~ 529 (630)
....|+..+++.+.... .+.||||-+.|....+.|+..|...|++..+++.... +++.-+-. ..| ...|-|||++
T Consensus 609 t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h--~~EAeIVA-~AG~~GaVTIATNM 685 (1112)
T PRK12901 609 TKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLH--QKEAEIVA-EAGQPGTVTIATNM 685 (1112)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccch--hhHHHHHH-hcCCCCcEEEeccC
Confidence 34567888887776553 3558999999999999999999999999888877643 33333322 334 4569999999
Q ss_pred cccCCCCC--------CccEEEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEeccccH
Q 006824 530 AARGLDIK--------SIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (630)
Q Consensus 530 ~~~Gldi~--------~v~~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~ 580 (630)
++||-||. +--+||.-..+.|...-.|..||+||.| .+|.+.+|++-+|.
T Consensus 686 AGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQG-DPGsS~f~lSLEDd 743 (1112)
T PRK12901 686 AGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQG-DPGSSQFYVSLEDN 743 (1112)
T ss_pred cCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCC-CCCcceEEEEcccH
Confidence 99999998 4568999999999999999999999999 58999999998874
No 154
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.62 E-value=3.1e-15 Score=142.06 Aligned_cols=153 Identities=23% Similarity=0.175 Sum_probs=101.6
Q ss_pred CCcHHHHHHHHHHHc-------CCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHH
Q 006824 247 KPTSIQCQALPIILS-------GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETK 319 (630)
Q Consensus 247 ~~~~~Q~~~i~~il~-------g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~ 319 (630)
+|+++|.+++..+.. ++.+++.+|||||||.+++..+.... . ++||++|+..|+.|+.+.+.
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~-~----------~~l~~~p~~~l~~Q~~~~~~ 71 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA-R----------KVLIVAPNISLLEQWYDEFD 71 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH-C----------EEEEEESSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc-c----------ceeEecCHHHHHHHHHHHHH
Confidence 589999999998883 68999999999999988665444443 1 69999999999999999997
Q ss_pred HHhhhcCceEEE----------EECC-CChHHHHHHHHcCCcEEEeChHHHHHHHHcc-----------ccccCceeEEE
Q 006824 320 KFAKSHGIRVSA----------VYGG-MSKLDQFKELKAGCEIVIATPGRLIDMLKMK-----------ALTMSRVTYLV 377 (630)
Q Consensus 320 ~~~~~~~~~~~~----------~~gg-~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~-----------~~~l~~i~~lV 377 (630)
.+.......... .... ..............+++++|+..|....... ........+||
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI 151 (184)
T PF04851_consen 72 DFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVI 151 (184)
T ss_dssp HHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEE
T ss_pred HhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEE
Confidence 765431111000 0011 1111111222345789999999998876531 12345678999
Q ss_pred ecchhhhhcCCcHHHHHHHHhhcCCCCcEEEEeecccH
Q 006824 378 LDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPR 415 (630)
Q Consensus 378 vDEah~~~~~~~~~~v~~i~~~l~~~~q~l~~SAT~~~ 415 (630)
+||||++....- ...++. .+...+|+|||||.+
T Consensus 152 ~DEaH~~~~~~~---~~~i~~--~~~~~~l~lTATp~r 184 (184)
T PF04851_consen 152 IDEAHHYPSDSS---YREIIE--FKAAFILGLTATPFR 184 (184)
T ss_dssp EETGGCTHHHHH---HHHHHH--SSCCEEEEEESS-S-
T ss_pred EehhhhcCCHHH---HHHHHc--CCCCeEEEEEeCccC
Confidence 999999764431 344444 556779999999864
No 155
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.62 E-value=4.8e-14 Score=166.69 Aligned_cols=325 Identities=22% Similarity=0.270 Sum_probs=206.7
Q ss_pred CCCcHHHHHHHHHHH-----cCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHH
Q 006824 246 EKPTSIQCQALPIIL-----SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKK 320 (630)
Q Consensus 246 ~~~~~~Q~~~i~~il-----~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~ 320 (630)
..+.++|..++.++. .+.+.++...+|.|||++.+..+. +++... ....+.+||+||+ +++.+|..++.+
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~-~~~~~~---~~~~~~~liv~p~-s~~~nw~~e~~k 411 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLL-SLLESI---KVYLGPALIVVPA-SLLSNWKREFEK 411 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHH-hhhhcc---cCCCCCeEEEecH-HHHHHHHHHHhh
Confidence 567899999999866 367889999999999987544433 333221 1114568999997 566689999999
Q ss_pred HhhhcCceEEEEECCCCh----HHHHHHHHcC-----CcEEEeChHHHHHHH-HccccccCceeEEEecchhhhhcCCcH
Q 006824 321 FAKSHGIRVSAVYGGMSK----LDQFKELKAG-----CEIVIATPGRLIDML-KMKALTMSRVTYLVLDEADRMFDLGFE 390 (630)
Q Consensus 321 ~~~~~~~~~~~~~gg~~~----~~~~~~l~~~-----~dIiv~Tp~~L~~~l-~~~~~~l~~i~~lVvDEah~~~~~~~~ 390 (630)
+...... +...+|.... ......+... .+++++|++.|.... ......-..+.++|+||+|++.+.. .
T Consensus 412 ~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~-s 489 (866)
T COG0553 412 FAPDLRL-VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQ-S 489 (866)
T ss_pred hCccccc-eeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhh-h
Confidence 9874432 5555554431 4444444442 799999999998742 1122334568899999999975432 1
Q ss_pred HHHHHHHhhcCCCCcEEEEeeccc-HHHHHH---HH--------------------------------------------
Q 006824 391 PQIRSIVGQIRPDRQTLLFSATMP-RKVEKL---AR-------------------------------------------- 422 (630)
Q Consensus 391 ~~v~~i~~~l~~~~q~l~~SAT~~-~~~~~l---~~-------------------------------------------- 422 (630)
.....+. .++...+ +++|+||- +.+.++ ..
T Consensus 490 ~~~~~l~-~~~~~~~-~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 567 (866)
T COG0553 490 SEGKALQ-FLKALNR-LDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGIELLRK 567 (866)
T ss_pred HHHHHHH-HHhhcce-eeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccchhhHHHHHHHHHH
Confidence 1111111 1111111 33333331 000000 00
Q ss_pred ---H----------------------------------------------------------------------------
Q 006824 423 ---E---------------------------------------------------------------------------- 423 (630)
Q Consensus 423 ---~---------------------------------------------------------------------------- 423 (630)
.
T Consensus 568 ~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 647 (866)
T COG0553 568 LLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALLTR 647 (866)
T ss_pred HHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHH
Confidence 0
Q ss_pred ---HcCCCeEEEEc-ccccccc--------cceEEEEEcCCcc-ccHHHHHHhc-cCCCCC-C--CEEEEccchhhHHHH
Q 006824 424 ---ILSDPVRVTVG-EVGMANE--------DITQVVHVIPSDA-EKLPWLLEKL-PGMIDD-G--DVLVFASKKTTVDEI 486 (630)
Q Consensus 424 ---~~~~~~~i~~~-~~~~~~~--------~i~q~~~~~~~~~-~k~~~l~~~l-~~~~~~-~--~iLIF~~s~~~~~~l 486 (630)
+|..|..+..+ ....... ............. .|...+..++ ...... . ++|||++.....+.+
T Consensus 648 lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il 727 (866)
T COG0553 648 LRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLL 727 (866)
T ss_pred HHHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHH
Confidence 00000000000 0000000 0000000000011 4666666666 344333 3 899999999999999
Q ss_pred HHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcC--CceEEEEcCCcccCCCCCCccEEEEeCCCCCHHHHHHHhhhcccC
Q 006824 487 ESQLAQKGFKAAALHGDKDQASRMEILQKFKSG--VYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRA 564 (630)
Q Consensus 487 ~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g--~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~QriGR~gR~ 564 (630)
..+|...++.+..++|.++...|...+..|.++ ...+|++|.+++.|+|+.++++||+||++||+....|...|++|.
T Consensus 728 ~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~Ri 807 (866)
T COG0553 728 EDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRI 807 (866)
T ss_pred HHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHh
Confidence 999999999999999999999999999999986 455677889999999999999999999999999999999999999
Q ss_pred CCC-CeEEEEEecccc
Q 006824 565 GDK-DGTAYTLVTQKE 579 (630)
Q Consensus 565 g~~-~g~~~~l~~~~d 579 (630)
|++ .-.++.+++...
T Consensus 808 gQ~~~v~v~r~i~~~t 823 (866)
T COG0553 808 GQKRPVKVYRLITRGT 823 (866)
T ss_pred cCcceeEEEEeecCCc
Confidence 944 445666666554
No 156
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.59 E-value=1.1e-12 Score=148.58 Aligned_cols=117 Identities=22% Similarity=0.352 Sum_probs=84.0
Q ss_pred CCCEEEEccchhhHHHHHHHHHhC-CCcEEEEeCCCCHHHHHHHHHHhh----cCCceEEEEcCCcccCCCCCC--ccEE
Q 006824 470 DGDVLVFASKKTTVDEIESQLAQK-GFKAAALHGDKDQASRMEILQKFK----SGVYHVLIATDVAARGLDIKS--IKSV 542 (630)
Q Consensus 470 ~~~iLIF~~s~~~~~~l~~~L~~~-~~~~~~ihg~~~~~~r~~~~~~F~----~g~~~VLvaT~~~~~Gldi~~--v~~V 542 (630)
.+++|||++|+...+.++..|... +.. ..++|.. .|..+++.|+ .|+..||++|..+.+|||+|+ +++|
T Consensus 534 ~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~v 609 (697)
T PRK11747 534 HKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQV 609 (697)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCCc---hHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEE
Confidence 557999999999999999999753 333 4556642 4667776666 478889999999999999998 7899
Q ss_pred EEeCCCC----CHH--------------------------HHHHHhhhcccCCCCCeEEEEEeccc-cHHHHHHHHHHH
Q 006824 543 VNFDIAR----DMD--------------------------MHVHRIGRTGRAGDKDGTAYTLVTQK-EARFAGELVNSL 590 (630)
Q Consensus 543 I~~~~p~----~~~--------------------------~y~QriGR~gR~g~~~g~~~~l~~~~-d~~~~~~l~~~l 590 (630)
|+..+|. +|. .+.|.+||.-|.....|.++++-..- ...+-..+++.|
T Consensus 610 II~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R~~~~~Yg~~~l~sL 688 (697)
T PRK11747 610 IITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRRLLTKRYGKRLLDAL 688 (697)
T ss_pred EEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEcccccchhHHHHHHHhC
Confidence 9988764 221 22489999999875566655444432 344555666555
No 157
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.58 E-value=5.1e-14 Score=156.77 Aligned_cols=313 Identities=18% Similarity=0.229 Sum_probs=211.8
Q ss_pred CCcHHHHHHHHHHHcC-CCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHH-Hhhh
Q 006824 247 KPTSIQCQALPIILSG-RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKK-FAKS 324 (630)
Q Consensus 247 ~~~~~Q~~~i~~il~g-~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~-~~~~ 324 (630)
...|+|.|.++.+.+. +++++++|+|||||.++-++++. ..+..++++++|..+.+...+..|.+ |...
T Consensus 1143 ~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~---------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~ 1213 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR---------PDTIGRAVYIAPLEEIADEQYRDWEKKFSKL 1213 (1674)
T ss_pred ccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC---------CccceEEEEecchHHHHHHHHHHHHHhhccc
Confidence 3479999999998755 67999999999999987777765 23356799999999999888877754 5555
Q ss_pred cCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCC------cHHHHHHHHh
Q 006824 325 HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG------FEPQIRSIVG 398 (630)
Q Consensus 325 ~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~------~~~~v~~i~~ 398 (630)
.|..++.+.|..+..- .+....+|+|+||+++-.+ + ..+.+++.|+||+|.+.+.. ... ++.|-.
T Consensus 1214 ~G~~~~~l~ge~s~~l---kl~~~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg~~g~v~evi~S-~r~ia~ 1284 (1674)
T KOG0951|consen 1214 LGLRIVKLTGETSLDL---KLLQKGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGGVYGAVYEVICS-MRYIAS 1284 (1674)
T ss_pred cCceEEecCCccccch---HHhhhcceEEechhHHHHH-h----hhhhcceEeeehhhhhcccCCceEEEEee-HHHHHH
Confidence 6888888877665442 3444589999999998665 2 67789999999999977321 112 566667
Q ss_pred hcCCCCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCcc--ccH----HHHHHhcc-CCCCCC
Q 006824 399 QIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDA--EKL----PWLLEKLP-GMIDDG 471 (630)
Q Consensus 399 ~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~--~k~----~~l~~~l~-~~~~~~ 471 (630)
.+-+..+++.+|..+.+. ..+ +...+..+...............+..+.... ... ......+. ......
T Consensus 1285 q~~k~ir~v~ls~~lana-~d~---ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k 1360 (1674)
T KOG0951|consen 1285 QLEKKIRVVALSSSLANA-RDL---IGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRK 1360 (1674)
T ss_pred HHHhheeEEEeehhhccc-hhh---ccccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCC
Confidence 777788899999887643 333 1122222322223333333333333332211 111 11122222 223456
Q ss_pred CEEEEccchhhHHHHHHHHHh----------------------CCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCC
Q 006824 472 DVLVFASKKTTVDEIESQLAQ----------------------KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDV 529 (630)
Q Consensus 472 ~iLIF~~s~~~~~~l~~~L~~----------------------~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~ 529 (630)
+.+||+++++.|..++..|-. ...+.++=|.+++..+..-+...|..|.+.|+|....
T Consensus 1361 ~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~ 1440 (1674)
T KOG0951|consen 1361 PAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD 1440 (1674)
T ss_pred CeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc
Confidence 899999999999877655432 1233444499999999999999999999999998866
Q ss_pred cccCCCCCCccEEEE----eC------CCCCHHHHHHHhhhcccCCCCCeEEEEEeccccHHHHHHH
Q 006824 530 AARGLDIKSIKSVVN----FD------IARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGEL 586 (630)
Q Consensus 530 ~~~Gldi~~v~~VI~----~~------~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~d~~~~~~l 586 (630)
..|+-...--.||+ || .+..+....|++|++.|+ |.|+++....+..++.+.
T Consensus 1441 -~~~~~~~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~~----~k~vi~~~~~~k~yykkf 1502 (1674)
T KOG0951|consen 1441 -CYGTKLKAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASGA----GKCVIMCHTPKKEYYKKF 1502 (1674)
T ss_pred -cccccccceEEEEecceeecccccccccCchhHHHHHhhhhcCC----ccEEEEecCchHHHHHHh
Confidence 77777654333332 33 245688899999999985 568888888777766554
No 158
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.58 E-value=1.2e-12 Score=149.61 Aligned_cols=74 Identities=22% Similarity=0.201 Sum_probs=61.7
Q ss_pred CCCCCcHHHHHHHHHHH----cCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHH
Q 006824 244 GYEKPTSIQCQALPIIL----SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETK 319 (630)
Q Consensus 244 ~~~~~~~~Q~~~i~~il----~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~ 319 (630)
.|..++|.|.+.+..+. .+.++++.+|||+|||++.+.|++......+ ..+++++++.|..-..|+.++++
T Consensus 7 Py~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~-----~~~kIiy~sRThsQl~q~i~Elk 81 (705)
T TIGR00604 7 PYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP-----EVRKIIYASRTHSQLEQATEELR 81 (705)
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc-----ccccEEEEcccchHHHHHHHHHH
Confidence 45667999999886654 7789999999999999999999998765432 34789999999999999999999
Q ss_pred HHh
Q 006824 320 KFA 322 (630)
Q Consensus 320 ~~~ 322 (630)
+..
T Consensus 82 ~~~ 84 (705)
T TIGR00604 82 KLM 84 (705)
T ss_pred hhh
Confidence 853
No 159
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.55 E-value=2.1e-14 Score=116.93 Aligned_cols=81 Identities=46% Similarity=0.724 Sum_probs=77.5
Q ss_pred HHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEEEEeCCCCCHHHHHHHhhhcccC
Q 006824 485 EIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRA 564 (630)
Q Consensus 485 ~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~QriGR~gR~ 564 (630)
.++..|...++.+..+||.++..+|..++..|..|...|||+|+++++|+|++.+++||++++|+++..|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46778888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 006824 565 G 565 (630)
Q Consensus 565 g 565 (630)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 6
No 160
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.48 E-value=2e-12 Score=145.33 Aligned_cols=308 Identities=19% Similarity=0.189 Sum_probs=177.4
Q ss_pred CcHHHHHHHHHHHc--------CCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHH
Q 006824 248 PTSIQCQALPIILS--------GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETK 319 (630)
Q Consensus 248 ~~~~Q~~~i~~il~--------g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~ 319 (630)
-..+|-.|+..+.. |-=++-.|.||+|||++= .-+++.+.. ...|.+..|-.-.|.|--|.=..++
T Consensus 409 rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aN-ARImyaLsd-----~~~g~RfsiALGLRTLTLQTGda~r 482 (1110)
T TIGR02562 409 RFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLAN-ARAMYALRD-----DKQGARFAIALGLRSLTLQTGHALK 482 (1110)
T ss_pred CcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHH-HHHHHHhCC-----CCCCceEEEEccccceeccchHHHH
Confidence 35689999988764 223577899999999763 333333322 2346677777788888777777777
Q ss_pred HHhhhcCceEEEEECCCChHHHHH-------------------------------------------HHH--------cC
Q 006824 320 KFAKSHGIRVSAVYGGMSKLDQFK-------------------------------------------ELK--------AG 348 (630)
Q Consensus 320 ~~~~~~~~~~~~~~gg~~~~~~~~-------------------------------------------~l~--------~~ 348 (630)
+-.....-...+++||....+.+. .+. -.
T Consensus 483 ~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~ 562 (1110)
T TIGR02562 483 TRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLA 562 (1110)
T ss_pred HhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhc
Confidence 655433333444444433222111 000 01
Q ss_pred CcEEEeChHHHHHHHHc--c-ccccC----ceeEEEecchhhhhcCCcHHHHHHHHhhc-CCCCcEEEEeecccHHHHH-
Q 006824 349 CEIVIATPGRLIDMLKM--K-ALTMS----RVTYLVLDEADRMFDLGFEPQIRSIVGQI-RPDRQTLLFSATMPRKVEK- 419 (630)
Q Consensus 349 ~dIiv~Tp~~L~~~l~~--~-~~~l~----~i~~lVvDEah~~~~~~~~~~v~~i~~~l-~~~~q~l~~SAT~~~~~~~- 419 (630)
++|+|||+..++..... . ...+. .-+.|||||+|.+-... ...+..++.-+ .....++++|||+|+.+..
T Consensus 563 apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~-~~~L~rlL~w~~~lG~~VlLmSATLP~~l~~~ 641 (1110)
T TIGR02562 563 APVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPED-LPALLRLVQLAGLLGSRVLLSSATLPPALVKT 641 (1110)
T ss_pred CCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHH-HHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHH
Confidence 78999999999887632 1 11111 23679999999843222 22333333321 1357899999999988654
Q ss_pred HHHHH----------cCCC---eEEEEc---cccccc--------------------------ccceEEEEE--cCCcc-
Q 006824 420 LAREI----------LSDP---VRVTVG---EVGMAN--------------------------EDITQVVHV--IPSDA- 454 (630)
Q Consensus 420 l~~~~----------~~~~---~~i~~~---~~~~~~--------------------------~~i~q~~~~--~~~~~- 454 (630)
+...| .+.| ..+.-. ...... ..+...... ++...
T Consensus 642 L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~~~~~~ 721 (1110)
T TIGR02562 642 LFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLSLSSLPR 721 (1110)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEeecCCccc
Confidence 33333 2222 211110 000000 011111111 11111
Q ss_pred ---ccHHHHHHhccCC------------CCCCC----EEEEccchhhHHHHHHHHHhC------CCcEEEEeCCCCHHHH
Q 006824 455 ---EKLPWLLEKLPGM------------IDDGD----VLVFASKKTTVDEIESQLAQK------GFKAAALHGDKDQASR 509 (630)
Q Consensus 455 ---~k~~~l~~~l~~~------------~~~~~----iLIF~~s~~~~~~l~~~L~~~------~~~~~~ihg~~~~~~r 509 (630)
.....+.+.+.+. ...++ -||-++++..+..++..|... .+.++++|+......|
T Consensus 722 ~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~R 801 (1110)
T TIGR02562 722 ENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLR 801 (1110)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHH
Confidence 1112222222110 01222 378888889888888888754 3458899999987777
Q ss_pred HHHHHHh----------------------hc----CCceEEEEcCCcccCCCCCCccEEEEeCCCCCHHHHHHHhhhccc
Q 006824 510 MEILQKF----------------------KS----GVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGR 563 (630)
Q Consensus 510 ~~~~~~F----------------------~~----g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~QriGR~gR 563 (630)
..+.++. .+ +...|+|+|++++.|+|+. .+.+| .-|.++...+|++||+.|
T Consensus 802 s~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~d-fd~~~--~~~~~~~sliQ~aGR~~R 878 (1110)
T TIGR02562 802 SYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDHD-YDWAI--ADPSSMRSIIQLAGRVNR 878 (1110)
T ss_pred HHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEeccc-CCeee--eccCcHHHHHHHhhcccc
Confidence 7666553 12 3567999999999999994 34443 446779999999999999
Q ss_pred CC
Q 006824 564 AG 565 (630)
Q Consensus 564 ~g 565 (630)
.|
T Consensus 879 ~~ 880 (1110)
T TIGR02562 879 HR 880 (1110)
T ss_pred cc
Confidence 87
No 161
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.46 E-value=5.7e-12 Score=140.41 Aligned_cols=275 Identities=9% Similarity=0.123 Sum_probs=161.4
Q ss_pred CCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHH---HHHHHHc
Q 006824 271 TGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD---QFKELKA 347 (630)
Q Consensus 271 TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~---~~~~l~~ 347 (630)
+|||||.+|+-.+ ..++.. |..+|||+|...|..|+...++..+. +..+..++++.+..+ .|..+..
T Consensus 169 ~GSGKTevyl~~i-~~~l~~-------Gk~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w~~~~~ 238 (665)
T PRK14873 169 PGEDWARRLAAAA-AATLRA-------GRGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRWLAVLR 238 (665)
T ss_pred CCCcHHHHHHHHH-HHHHHc-------CCeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHHHHhC
Confidence 5999999876544 444332 66799999999999999999887763 256778888777554 4455555
Q ss_pred C-CcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcC---CcHHHHHH--HHhhcCCCCcEEEEeecccHHHHHHH
Q 006824 348 G-CEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDL---GFEPQIRS--IVGQIRPDRQTLLFSATMPRKVEKLA 421 (630)
Q Consensus 348 ~-~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~---~~~~~v~~--i~~~l~~~~q~l~~SAT~~~~~~~l~ 421 (630)
| ..|||+|-..+ ...+.++.+|||||=|.-.-. ....+.+. ++..-..+..+|+.|||++-+....+
T Consensus 239 G~~~IViGtRSAv-------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~~~~ 311 (665)
T PRK14873 239 GQARVVVGTRSAV-------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQALV 311 (665)
T ss_pred CCCcEEEEcceeE-------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHHHHH
Confidence 5 78999996443 346789999999999853211 11112222 22223357789999999986654433
Q ss_pred HHHcCCCeEEEEc--ccccccccceEEEEE---cC-Cccc----cHHHHHHhccCCCCCCCEEEEccchhhHHHHH----
Q 006824 422 REILSDPVRVTVG--EVGMANEDITQVVHV---IP-SDAE----KLPWLLEKLPGMIDDGDVLVFASKKTTVDEIE---- 487 (630)
Q Consensus 422 ~~~~~~~~~i~~~--~~~~~~~~i~q~~~~---~~-~~~~----k~~~l~~~l~~~~~~~~iLIF~~s~~~~~~l~---- 487 (630)
.. +....+... ........+.-.-.. .. .... --..++..+.+.+..|++|||+|.+..+-.+.
T Consensus 312 ~~--g~~~~~~~~~~~~~~~~P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~gqvll~lnRrGyap~l~C~~C 389 (665)
T PRK14873 312 ES--GWAHDLVAPRPVVRARAPRVRALGDSGLALERDPAARAARLPSLAFRAARDALEHGPVLVQVPRRGYVPSLACARC 389 (665)
T ss_pred hc--CcceeeccccccccCCCCeEEEEeCchhhhccccccccCccCHHHHHHHHHHHhcCcEEEEecCCCCCCeeEhhhC
Confidence 21 111111000 001111111111000 00 0000 11234555555555569999999877664322
Q ss_pred -------------------------------------------------------HHHHhC--CCcEEEEeCCCCHHHHH
Q 006824 488 -------------------------------------------------------SQLAQK--GFKAAALHGDKDQASRM 510 (630)
Q Consensus 488 -------------------------------------------------------~~L~~~--~~~~~~ihg~~~~~~r~ 510 (630)
+.|.+. +.++..+. +.
T Consensus 390 g~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V~r~d-------~d 462 (665)
T PRK14873 390 RTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPVVTSG-------GD 462 (665)
T ss_pred cCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCEEEEC-------hH
Confidence 111111 12222222 23
Q ss_pred HHHHHhhcCCceEEEEcC----CcccCCCCCCccEEEEeCCCC------------CHHHHHHHhhhcccCCCCCeEEEEE
Q 006824 511 EILQKFKSGVYHVLIATD----VAARGLDIKSIKSVVNFDIAR------------DMDMHVHRIGRTGRAGDKDGTAYTL 574 (630)
Q Consensus 511 ~~~~~F~~g~~~VLvaT~----~~~~Gldi~~v~~VI~~~~p~------------~~~~y~QriGR~gR~g~~~g~~~~l 574 (630)
.++..|. ++..|||+|. +++ +++..|+..|... ....+.|..||+||.+ +.|.+++.
T Consensus 463 ~~l~~~~-~~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~-~~G~V~iq 535 (665)
T PRK14873 463 QVVDTVD-AGPALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRA-DGGQVVVV 535 (665)
T ss_pred HHHHhhc-cCCCEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCC-CCCEEEEE
Confidence 4677776 5899999998 555 3667787766432 1345678999999977 67888887
Q ss_pred eccc
Q 006824 575 VTQK 578 (630)
Q Consensus 575 ~~~~ 578 (630)
..+.
T Consensus 536 ~~p~ 539 (665)
T PRK14873 536 AESS 539 (665)
T ss_pred eCCC
Confidence 5444
No 162
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.42 E-value=1.6e-11 Score=134.98 Aligned_cols=289 Identities=16% Similarity=0.198 Sum_probs=181.5
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHH
Q 006824 265 IIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE 344 (630)
Q Consensus 265 ~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~ 344 (630)
.++-+|+|||||.+. +..+...++. ...++|+|...+.|+.++...+... ++.-...|........ .
T Consensus 52 ~vVRSpMGTGKTtaL-i~wLk~~l~~------~~~~VLvVShRrSL~~sL~~rf~~~----~l~gFv~Y~d~~~~~i-~- 118 (824)
T PF02399_consen 52 LVVRSPMGTGKTTAL-IRWLKDALKN------PDKSVLVVSHRRSLTKSLAERFKKA----GLSGFVNYLDSDDYII-D- 118 (824)
T ss_pred EEEECCCCCCcHHHH-HHHHHHhccC------CCCeEEEEEhHHHHHHHHHHHHhhc----CCCcceeeeccccccc-c-
Confidence 588999999999863 4444444332 2667999999999999988777665 2222222222211100 0
Q ss_pred HHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCcHHH------HH-HHHhhcCCCCcEEEEeecccHHH
Q 006824 345 LKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQ------IR-SIVGQIRPDRQTLLFSATMPRKV 417 (630)
Q Consensus 345 l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~------v~-~i~~~l~~~~q~l~~SAT~~~~~ 417 (630)
....+-+++..+.|..+. ...+.++++|||||+-..+..-|.+. +. .+...++....+|++-|++....
T Consensus 119 -~~~~~rLivqIdSL~R~~---~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~t 194 (824)
T PF02399_consen 119 -GRPYDRLIVQIDSLHRLD---GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQT 194 (824)
T ss_pred -ccccCeEEEEehhhhhcc---cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHH
Confidence 012467778887776653 22466799999999997665423222 22 23344567788999999999998
Q ss_pred HHHHHHHcCC-CeEEEEcccccccccceEEEEEcC----------------------------------CccccHHHHHH
Q 006824 418 EKLAREILSD-PVRVTVGEVGMANEDITQVVHVIP----------------------------------SDAEKLPWLLE 462 (630)
Q Consensus 418 ~~l~~~~~~~-~~~i~~~~~~~~~~~i~q~~~~~~----------------------------------~~~~k~~~l~~ 462 (630)
-+++..+..+ ++.+.+.......-.-++....-. .......++-.
T Consensus 195 vdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~ 274 (824)
T PF02399_consen 195 VDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSE 274 (824)
T ss_pred HHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHH
Confidence 8888886543 344433321111110000000000 00111223333
Q ss_pred hccCCCCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCC--cc
Q 006824 463 KLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKS--IK 540 (630)
Q Consensus 463 ~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~--v~ 540 (630)
++.....+.+|-||++|...++.+++.....+.++..+++..+..+.+ . -++++|+++|.++..|+++.. .+
T Consensus 275 L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv~----~--W~~~~VviYT~~itvG~Sf~~~HF~ 348 (824)
T PF02399_consen 275 LLARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDVE----S--WKKYDVVIYTPVITVGLSFEEKHFD 348 (824)
T ss_pred HHHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccccc----c--ccceeEEEEeceEEEEeccchhhce
Confidence 333334466889999999999999999999999999998877665332 1 467999999999999999865 34
Q ss_pred EEEEeCCC--C--CHHHHHHHhhhcccCCCCCeEEEEEeccc
Q 006824 541 SVVNFDIA--R--DMDMHVHRIGRTGRAGDKDGTAYTLVTQK 578 (630)
Q Consensus 541 ~VI~~~~p--~--~~~~y~QriGR~gR~g~~~g~~~~l~~~~ 578 (630)
.|+.|=-| . +.....|++||+-... ....++.+...
T Consensus 349 ~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~--~~ei~v~~d~~ 388 (824)
T PF02399_consen 349 SMFAYVKPMSYGPDMVSVYQMLGRVRSLL--DNEIYVYIDAS 388 (824)
T ss_pred EEEEEecCCCCCCcHHHHHHHHHHHHhhc--cCeEEEEEecc
Confidence 45555222 2 2345789999998876 45666666653
No 163
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.33 E-value=7e-11 Score=130.80 Aligned_cols=320 Identities=20% Similarity=0.220 Sum_probs=200.8
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcC
Q 006824 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (630)
Q Consensus 247 ~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~ 326 (630)
.++|+-.|.+-.+.....-+..+.||-|||++..+|+.-..+. |..+.+|+..--||..-.+++.++...+|
T Consensus 78 g~~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~--------gkgVhvVTvNdYLA~RDae~m~~l~~~LG 149 (822)
T COG0653 78 GMRHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALA--------GKGVHVVTVNDYLARRDAEWMGPLYEFLG 149 (822)
T ss_pred CCChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcC--------CCCcEEeeehHHhhhhCHHHHHHHHHHcC
Confidence 3455556666667677778999999999999999998665543 55588999999999999999999999999
Q ss_pred ceEEEEECCCChHHHHHHHHcCCcEEEeChHHHH-HHHH------ccccccCceeEEEecchhhhhc----------C--
Q 006824 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLI-DMLK------MKALTMSRVTYLVLDEADRMFD----------L-- 387 (630)
Q Consensus 327 ~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~-~~l~------~~~~~l~~i~~lVvDEah~~~~----------~-- 387 (630)
+++.+...+....+....+ .|||..+|-..|- +++. ..........+.|+||+|.++- .
T Consensus 150 lsvG~~~~~m~~~ek~~aY--~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG~~ 227 (822)
T COG0653 150 LSVGVILAGMSPEEKRAAY--ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISGPA 227 (822)
T ss_pred CceeeccCCCChHHHHHHH--hcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeeeccc
Confidence 9999999998776654444 3999999976552 2222 2233455688999999998631 1
Q ss_pred ----CcHHHHHHHHhhcCCC--------CcEEEEeecccHHHHH---------------------H--HHHHc-CCCe--
Q 006824 388 ----GFEPQIRSIVGQIRPD--------RQTLLFSATMPRKVEK---------------------L--AREIL-SDPV-- 429 (630)
Q Consensus 388 ----~~~~~v~~i~~~l~~~--------~q~l~~SAT~~~~~~~---------------------l--~~~~~-~~~~-- 429 (630)
.....+..+...+... .+.|.|+-.=-...+. . +..++ .+..
T Consensus 228 ~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~dYI 307 (822)
T COG0653 228 EDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVDYI 307 (822)
T ss_pred ccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCeeE
Confidence 1122333333322211 1112221110000000 0 00000 0000
Q ss_pred --------------------------------------------------------------------------------
Q 006824 430 -------------------------------------------------------------------------------- 429 (630)
Q Consensus 430 -------------------------------------------------------------------------------- 429 (630)
T Consensus 308 Vrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY~l 387 (822)
T COG0653 308 VRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIYGL 387 (822)
T ss_pred EecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhccCC
Confidence
Q ss_pred EEEEcccccccccceEEEEEcCCccccHHHHHHhccCC-CCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHH
Q 006824 430 RVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGM-IDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQAS 508 (630)
Q Consensus 430 ~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~-~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~ 508 (630)
.+.+.+.......+...-..+.+...|+..++..+... ..+.|+||-+.++...+.+.+.|.+.|++..++...-. .
T Consensus 388 ~vv~iPTnrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h--~ 465 (822)
T COG0653 388 DVVVIPTNRPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH--A 465 (822)
T ss_pred ceeeccCCCcccCCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH--H
Confidence 00000000000011111122223456777777777654 34679999999999999999999999999888887654 3
Q ss_pred HHHHHHHhhcCCceEEEEcCCcccCCCCCCcc-----------EEEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEecc
Q 006824 509 RMEILQKFKSGVYHVLIATDVAARGLDIKSIK-----------SVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ 577 (630)
Q Consensus 509 r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~-----------~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~ 577 (630)
++.-+-.+.-....|-|||++++||-||.--. +||--.-..|-..--|.-||+||.| .+|.+..|++-
T Consensus 466 ~EA~Iia~AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQG-DpG~S~F~lSl 544 (822)
T COG0653 466 REAEIIAQAGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQG-DPGSSRFYLSL 544 (822)
T ss_pred HHHHHHhhcCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCC-Ccchhhhhhhh
Confidence 43333333333446889999999999997443 3444443444444458899999999 57999888887
Q ss_pred cc
Q 006824 578 KE 579 (630)
Q Consensus 578 ~d 579 (630)
.|
T Consensus 545 eD 546 (822)
T COG0653 545 ED 546 (822)
T ss_pred HH
Confidence 65
No 164
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.30 E-value=1.6e-11 Score=126.17 Aligned_cols=158 Identities=21% Similarity=0.207 Sum_probs=94.3
Q ss_pred HHHHHHHHHH-------------cCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHH
Q 006824 251 IQCQALPIIL-------------SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLE 317 (630)
Q Consensus 251 ~Q~~~i~~il-------------~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~ 317 (630)
+|.+++.+++ ..+.+|++..+|+|||++.+..+ .++...... .....+|||||. .+..||..+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~-~~l~~~~~~--~~~~~~LIv~P~-~l~~~W~~E 76 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALI-SYLKNEFPQ--RGEKKTLIVVPS-SLLSQWKEE 76 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHH-HHHHHCCTT--SS-S-EEEEE-T-TTHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhh-hhhhhcccc--ccccceeEeecc-chhhhhhhh
Confidence 5888888773 34789999999999998754443 344332110 111248999999 788899999
Q ss_pred HHHHhhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHH---ccccccCceeEEEecchhhhhcCCcHHHHH
Q 006824 318 TKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLK---MKALTMSRVTYLVLDEADRMFDLGFEPQIR 394 (630)
Q Consensus 318 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~---~~~~~l~~i~~lVvDEah~~~~~~~~~~v~ 394 (630)
+.+++....+++..+.|...............+++|+|++.+..... ...+.-..+++||+||+|.+.+. .....
T Consensus 77 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~--~s~~~ 154 (299)
T PF00176_consen 77 IEKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNK--DSKRY 154 (299)
T ss_dssp HHHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTT--TSHHH
T ss_pred hccccccccccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEecccccccc--ccccc
Confidence 99998655666665555541222222233458999999999981110 01111235999999999998544 23334
Q ss_pred HHHhhcCCCCcEEEEeecccH
Q 006824 395 SIVGQIRPDRQTLLFSATMPR 415 (630)
Q Consensus 395 ~i~~~l~~~~q~l~~SAT~~~ 415 (630)
..+..+. ....+++|||+..
T Consensus 155 ~~l~~l~-~~~~~lLSgTP~~ 174 (299)
T PF00176_consen 155 KALRKLR-ARYRWLLSGTPIQ 174 (299)
T ss_dssp HHHHCCC-ECEEEEE-SS-SS
T ss_pred ccccccc-cceEEeecccccc
Confidence 4444465 6667889999743
No 165
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.21 E-value=1.8e-09 Score=125.74 Aligned_cols=297 Identities=17% Similarity=0.178 Sum_probs=166.5
Q ss_pred CCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHH
Q 006824 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQF 342 (630)
Q Consensus 263 ~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 342 (630)
+..+++--||||||++.+..+ ..+... ...|.++||+-++.|-.|+.+++..+........ ...+..+..
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A-~~l~~~-----~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~Lk 343 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLA-RLLLEL-----PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSELK 343 (962)
T ss_pred CceEEEeecCCchHHHHHHHH-HHHHhc-----cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHHHHH
Confidence 468999999999998743332 333332 4589999999999999999999999976432211 233444444
Q ss_pred HHHHcC-CcEEEeChHHHHHHHHccc-cccCc-eeEEEecchhhhhcCCcHHHHHHHHhhcCCCCcEEEEeecccHHHHH
Q 006824 343 KELKAG-CEIVIATPGRLIDMLKMKA-LTMSR-VTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEK 419 (630)
Q Consensus 343 ~~l~~~-~dIiv~Tp~~L~~~l~~~~-~~l~~-i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q~l~~SAT~~~~~~~ 419 (630)
..+..+ ..|||||.+.|...+.... ..+.+ -=+||+||||| .+++.....+...++ +...++||+||--.-..
T Consensus 344 ~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHR---SQ~G~~~~~~~~~~~-~a~~~gFTGTPi~~~d~ 419 (962)
T COG0610 344 ELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHR---SQYGELAKLLKKALK-KAIFIGFTGTPIFKEDK 419 (962)
T ss_pred HHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhh---ccccHHHHHHHHHhc-cceEEEeeCCccccccc
Confidence 445544 3899999999998886541 11222 33678899999 334444444444443 47799999998432111
Q ss_pred H-HHHHcCCCeEEEEccc----ccccccceEEEE-EcCCc---------------------------------------c
Q 006824 420 L-AREILSDPVRVTVGEV----GMANEDITQVVH-VIPSD---------------------------------------A 454 (630)
Q Consensus 420 l-~~~~~~~~~~i~~~~~----~~~~~~i~q~~~-~~~~~---------------------------------------~ 454 (630)
. ....+++.+....-.. +... ++..... .+... .
T Consensus 420 ~tt~~~fg~ylh~Y~i~daI~Dg~vl-~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~ 498 (962)
T COG0610 420 DTTKDVFGDYLHTYTITDAIRDGAVL-PVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLA 498 (962)
T ss_pred cchhhhhcceeEEEecchhhccCcee-eEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcch
Confidence 1 1222233222211110 0000 1100000 00000 0
Q ss_pred cc----HHHHHHhccC-CCCCCCEEEEccchhhHHHHHHHHHhC-----------C--------C--cEEEE--eCCCCH
Q 006824 455 EK----LPWLLEKLPG-MIDDGDVLVFASKKTTVDEIESQLAQK-----------G--------F--KAAAL--HGDKDQ 506 (630)
Q Consensus 455 ~k----~~~l~~~l~~-~~~~~~iLIF~~s~~~~~~l~~~L~~~-----------~--------~--~~~~i--hg~~~~ 506 (630)
.+ ...+...... .....++.+.++++..+..+.+.+... + + ..... |... .
T Consensus 499 ~r~~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~ 577 (962)
T COG0610 499 VRLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAKL-K 577 (962)
T ss_pred HHHHHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHHH-H
Confidence 00 0111122222 223457777777777555554443321 0 0 00000 1111 2
Q ss_pred HHHHHHHHH--hhcCCceEEEEcCCcccCCCCCCccEEEEeCCCCCHHHHHHHhhhcccCC-C--CCeEEEEEec
Q 006824 507 ASRMEILQK--FKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAG-D--KDGTAYTLVT 576 (630)
Q Consensus 507 ~~r~~~~~~--F~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~QriGR~gR~g-~--~~g~~~~l~~ 576 (630)
..+...... +.....++||.++.+-.|+|.|.++++.. |-|--....+|.+.|+.|.- . ..|.++.|..
T Consensus 578 ~~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmYv-DK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g 651 (962)
T COG0610 578 DEKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLYV-DKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG 651 (962)
T ss_pred HHHhhhhhhhcCcCCCCCEEEEEccccccCCccccceEEe-ccccccchHHHHHHHhccCCCCCCCCcEEEECcc
Confidence 223333444 34456899999999999999999887765 44566778899999999965 2 3466666655
No 166
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.13 E-value=7.5e-11 Score=103.57 Aligned_cols=134 Identities=16% Similarity=0.186 Sum_probs=79.7
Q ss_pred CCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHH
Q 006824 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ 341 (630)
Q Consensus 262 g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~ 341 (630)
|+-.++-..+|+|||.-.+.-++...+.. +.++|||.|||.++..+.+.++.. .+++....-+
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~~-------~~rvLvL~PTRvva~em~~aL~~~----~~~~~t~~~~------ 66 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIKR-------RLRVLVLAPTRVVAEEMYEALKGL----PVRFHTNARM------ 66 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHHT-------T--EEEEESSHHHHHHHHHHTTTS----SEEEESTTSS------
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHHc-------cCeEEEecccHHHHHHHHHHHhcC----CcccCceeee------
Confidence 44567889999999986555556555443 778999999999999877666433 3333211111
Q ss_pred HHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCcHHHHHHHHhhc--CCCCcEEEEeecccHH
Q 006824 342 FKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI--RPDRQTLLFSATMPRK 416 (630)
Q Consensus 342 ~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l--~~~~q~l~~SAT~~~~ 416 (630)
.....+.-|-++|+..+...+.. ...+.++++||+||||-+-... -.....+..+ .....+|++|||+|-.
T Consensus 67 -~~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~Dp~s--IA~rg~l~~~~~~g~~~~i~mTATPPG~ 139 (148)
T PF07652_consen 67 -RTHFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTDPTS--IAARGYLRELAESGEAKVIFMTATPPGS 139 (148)
T ss_dssp -----SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--SHHH--HHHHHHHHHHHHTTS-EEEEEESS-TT-
T ss_pred -ccccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccCCHHH--HhhheeHHHhhhccCeeEEEEeCCCCCC
Confidence 12235677899999999887766 4457899999999999732111 0111122222 1235799999999855
No 167
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.07 E-value=1.7e-09 Score=109.96 Aligned_cols=73 Identities=21% Similarity=0.189 Sum_probs=58.4
Q ss_pred CCcHHHHHHH----HHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHH
Q 006824 247 KPTSIQCQAL----PIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (630)
Q Consensus 247 ~~~~~Q~~~i----~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 321 (630)
.|+|.|.+.+ ..+..|.++++.+|||+|||++|++|++.++...+.. ..+.+++|+++|..+..|...++++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~--~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER--IQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc--ccccceeEEeccHHHHHHHHHHHHhc
Confidence 3699999954 5556889999999999999999999999887654311 12347999999999999988877765
No 168
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.07 E-value=1.7e-09 Score=109.96 Aligned_cols=73 Identities=21% Similarity=0.189 Sum_probs=58.4
Q ss_pred CCcHHHHHHH----HHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHH
Q 006824 247 KPTSIQCQAL----PIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (630)
Q Consensus 247 ~~~~~Q~~~i----~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 321 (630)
.|+|.|.+.+ ..+..|.++++.+|||+|||++|++|++.++...+.. ..+.+++|+++|..+..|...++++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~--~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER--IQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc--ccccceeEEeccHHHHHHHHHHHHhc
Confidence 3699999954 5556889999999999999999999999887654311 12347999999999999988877765
No 169
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=99.04 E-value=2.4e-09 Score=114.56 Aligned_cols=108 Identities=24% Similarity=0.384 Sum_probs=91.0
Q ss_pred CCEEEEccchhhHHHHHHHHHhC------------------CCcEEEEeCCCCHHHHHHHHHHhhcCC---ceEEEEcCC
Q 006824 471 GDVLVFASKKTTVDEIESQLAQK------------------GFKAAALHGDKDQASRMEILQKFKSGV---YHVLIATDV 529 (630)
Q Consensus 471 ~~iLIF~~s~~~~~~l~~~L~~~------------------~~~~~~ihg~~~~~~r~~~~~~F~~g~---~~VLvaT~~ 529 (630)
.++|||..+....+.|...|.+. +.....+.|..+..+|++++++|+..- --+|++|.+
T Consensus 720 ~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstra 799 (1387)
T KOG1016|consen 720 EKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRA 799 (1387)
T ss_pred ceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhcc
Confidence 47999999999999999999764 234567889999999999999998742 247889999
Q ss_pred cccCCCCCCccEEEEeCCCCCHHHHHHHhhhcccCC-CCCeEEEEEeccc
Q 006824 530 AARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAG-DKDGTAYTLVTQK 578 (630)
Q Consensus 530 ~~~Gldi~~v~~VI~~~~p~~~~~y~QriGR~gR~g-~~~g~~~~l~~~~ 578 (630)
..-|+|+-+.+.+|+++.-|++---.|.+-|+.|.| .++..+|.++...
T Consensus 800 g~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~ 849 (1387)
T KOG1016|consen 800 GSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDN 849 (1387)
T ss_pred ccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhh
Confidence 999999999999999999999999999999999999 4556666666543
No 170
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.99 E-value=1.9e-08 Score=99.55 Aligned_cols=128 Identities=23% Similarity=0.311 Sum_probs=97.2
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhc
Q 006824 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (630)
Q Consensus 246 ~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~ 325 (630)
..|++.|.-++-.+..|+ |+...||-|||++..+|+..+.+. |..|-|++....||..=++++..++..+
T Consensus 76 ~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~--------G~~V~vvT~NdyLA~RD~~~~~~~y~~L 145 (266)
T PF07517_consen 76 LRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ--------GKGVHVVTSNDYLAKRDAEEMRPFYEFL 145 (266)
T ss_dssp ----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT--------SS-EEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh--------cCCcEEEeccHHHhhccHHHHHHHHHHh
Confidence 468888888887776666 999999999999988888877654 6668999999999999999999999999
Q ss_pred CceEEEEECCCChHHHHHHHHcCCcEEEeChHHHH-HHHHcc------ccccCceeEEEecchhhhh
Q 006824 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLI-DMLKMK------ALTMSRVTYLVLDEADRMF 385 (630)
Q Consensus 326 ~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~-~~l~~~------~~~l~~i~~lVvDEah~~~ 385 (630)
|+++.+++++.+..... ... .++|+.+|...+. ++|+.+ ....+.+.++||||+|.|+
T Consensus 146 Glsv~~~~~~~~~~~r~-~~Y-~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 146 GLSVGIITSDMSSEERR-EAY-AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp T--EEEEETTTEHHHHH-HHH-HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred hhccccCccccCHHHHH-HHH-hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 99999999987754432 222 2889999998886 344321 1125678999999999876
No 171
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.94 E-value=4.9e-09 Score=116.45 Aligned_cols=106 Identities=16% Similarity=0.199 Sum_probs=93.2
Q ss_pred CCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCC-ceE-EEEcCCcccCCCCCCccEEEEeCCC
Q 006824 471 GDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGV-YHV-LIATDVAARGLDIKSIKSVVNFDIA 548 (630)
Q Consensus 471 ~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~-~~V-LvaT~~~~~Gldi~~v~~VI~~~~p 548 (630)
.+++||++....+..+...|...++.+..+.|.|+...|.+.+..|..+. ..| |++..+++.|+|+..+.+|+..|+.
T Consensus 540 ~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~ 619 (674)
T KOG1001|consen 540 PKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPW 619 (674)
T ss_pred CceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchh
Confidence 48999999999999999999999999999999999999999999999654 344 4577888999999999999999999
Q ss_pred CCHHHHHHHhhhcccCCCCCeEEEEEec
Q 006824 549 RDMDMHVHRIGRTGRAGDKDGTAYTLVT 576 (630)
Q Consensus 549 ~~~~~y~QriGR~gR~g~~~g~~~~l~~ 576 (630)
|||..--|.+.|++|.|+.+.+-++.+.
T Consensus 620 wnp~~eeQaidR~hrigq~k~v~v~r~~ 647 (674)
T KOG1001|consen 620 WNPAVEEQAIDRAHRIGQTKPVKVSRFI 647 (674)
T ss_pred cChHHHHHHHHHHHHhcccceeeeeeeh
Confidence 9999999999999999955555454443
No 172
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.78 E-value=3.8e-08 Score=107.47 Aligned_cols=309 Identities=17% Similarity=0.234 Sum_probs=180.3
Q ss_pred HHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHH-HhhhcCceEEEEE
Q 006824 255 ALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKK-FAKSHGIRVSAVY 333 (630)
Q Consensus 255 ~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~-~~~~~~~~~~~~~ 333 (630)
.+..+...+-+++-+.||.|||..+.--+|..++... ......+.+.-|+|..+.-+.+.+.. -+...+-.+
T Consensus 386 i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns---~g~~~na~v~qprrisaisiaerva~er~e~~g~tv---- 458 (1282)
T KOG0921|consen 386 ILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENS---NGASFNAVVSQPRRISAISLAERVANERGEEVGETC---- 458 (1282)
T ss_pred HHHHHhcCceeeEeecccccchhHHHHHHHHHHhhcc---ccccccceeccccccchHHHHHHHHHhhHHhhcccc----
Confidence 3444556677899999999999887777777766543 12223467778988887766654432 222222222
Q ss_pred CCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhh-cCCcHHHHHHHHhhcCCCCcE------
Q 006824 334 GGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF-DLGFEPQIRSIVGQIRPDRQT------ 406 (630)
Q Consensus 334 gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~-~~~~~~~v~~i~~~l~~~~q~------ 406 (630)
|...+....- -..---|.+||.+-+.+++... +..+.++|+||.|..- +..|...+..-+...-++...
T Consensus 459 gy~vRf~Sa~-prpyg~i~fctvgvllr~~e~g---lrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lmsat 534 (1282)
T KOG0921|consen 459 GYNVRFDSAT-PRPYGSIMFCTVGVLLRMMENG---LRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLMSAT 534 (1282)
T ss_pred cccccccccc-cccccceeeeccchhhhhhhhc---ccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhhhcc
Confidence 2211111100 0011358999999999888654 5578899999999621 222332222222222233344
Q ss_pred ----------------EEEeecccHHHHHHHHHHcCCCeEEEEccccccccc-ce-----------EEEEE-c-------
Q 006824 407 ----------------LLFSATMPRKVEKLAREILSDPVRVTVGEVGMANED-IT-----------QVVHV-I------- 450 (630)
Q Consensus 407 ----------------l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~-i~-----------q~~~~-~------- 450 (630)
.+.++|+|-. .++...+..+.....+........ .. ..... +
T Consensus 535 IdTd~f~~~f~~~p~~~~~grt~pvq--~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~ 612 (1282)
T KOG0921|consen 535 IDTDLFTNFFSSIPDVTVHGRTFPVQ--SFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNES 612 (1282)
T ss_pred cchhhhhhhhccccceeeccccccHH--HHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcch
Confidence 4445554422 222222211111111110000000 00 00000 0
Q ss_pred -------CCcc----ccHHHHHHhccCCCCCCCEEEEccchhhHHHHHHHHHhC-------CCcEEEEeCCCCHHHHHHH
Q 006824 451 -------PSDA----EKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK-------GFKAAALHGDKDQASRMEI 512 (630)
Q Consensus 451 -------~~~~----~k~~~l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~-------~~~~~~ihg~~~~~~r~~~ 512 (630)
.+.. .-...++..+....-.+-++||.+-......|.++|... .+.+..+|.+....+..++
T Consensus 613 ~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkv 692 (1282)
T KOG0921|consen 613 TRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKV 692 (1282)
T ss_pred hhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhc
Confidence 0000 111222333332223467999999999999999988654 4678899999988888888
Q ss_pred HHHhhcCCceEEEEcCCcccCCCCCCccEEEEeCC------------------CCCHHHHHHHhhhcccCCCCCeEEEEE
Q 006824 513 LQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDI------------------ARDMDMHVHRIGRTGRAGDKDGTAYTL 574 (630)
Q Consensus 513 ~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~------------------p~~~~~y~QriGR~gR~g~~~g~~~~l 574 (630)
.+....|..+++++|.++...+.|.++..||+.+. +.+....+||-||+||.- +|.|..+
T Consensus 693 f~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR--~G~~f~l 770 (1282)
T KOG0921|consen 693 FEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVR--PGFCFHL 770 (1282)
T ss_pred cCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceec--ccccccc
Confidence 88888999999999999999999988777775332 234556689999999974 7889888
Q ss_pred eccc
Q 006824 575 VTQK 578 (630)
Q Consensus 575 ~~~~ 578 (630)
.+..
T Consensus 771 cs~a 774 (1282)
T KOG0921|consen 771 CSRA 774 (1282)
T ss_pred cHHH
Confidence 7754
No 173
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.63 E-value=5.6e-07 Score=102.43 Aligned_cols=70 Identities=19% Similarity=0.078 Sum_probs=58.5
Q ss_pred HHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCcHHHHHHHHhhcCCCCcEEEEeeccc
Q 006824 345 LKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMP 414 (630)
Q Consensus 345 l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q~l~~SAT~~ 414 (630)
+.....|+++||..|..-+-.+.+.+..+..|||||||++........+-.++..-++..-+.+|||.+.
T Consensus 4 ly~~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~ 73 (814)
T TIGR00596 4 VYLEGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPE 73 (814)
T ss_pred HhhcCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCc
Confidence 3445689999999998777778888999999999999999876667777777777778888999999874
No 174
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=98.61 E-value=2e-05 Score=84.89 Aligned_cols=77 Identities=17% Similarity=0.317 Sum_probs=55.8
Q ss_pred CCCEEEEccchhhHHHHHHHHHhCCC-------cEEEEeCCCCHHHHHHHHHHhh----cCCceEEEEc--CCcccCCCC
Q 006824 470 DGDVLVFASKKTTVDEIESQLAQKGF-------KAAALHGDKDQASRMEILQKFK----SGVYHVLIAT--DVAARGLDI 536 (630)
Q Consensus 470 ~~~iLIF~~s~~~~~~l~~~L~~~~~-------~~~~ihg~~~~~~r~~~~~~F~----~g~~~VLvaT--~~~~~Gldi 536 (630)
++++++|+||+.....+...+.+.|+ +-+.+-..-+ -..++..+. .|...+|+|. ..+++|||+
T Consensus 629 PgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF 705 (821)
T KOG1133|consen 629 PGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSEGINF 705 (821)
T ss_pred CCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEecccccccccc
Confidence 38999999999999999999987643 2222222222 344555553 4666788776 788899999
Q ss_pred CC--ccEEEEeCCCC
Q 006824 537 KS--IKSVVNFDIAR 549 (630)
Q Consensus 537 ~~--v~~VI~~~~p~ 549 (630)
.+ .+.||.+++|.
T Consensus 706 ~D~LgRaVvvVGlPy 720 (821)
T KOG1133|consen 706 SDDLGRAVVVVGLPY 720 (821)
T ss_pred ccccccEEEEeecCC
Confidence 87 78999999886
No 175
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.55 E-value=1.4e-08 Score=112.79 Aligned_cols=227 Identities=20% Similarity=0.202 Sum_probs=145.4
Q ss_pred CcHHHHHHHHHHH-cCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcC
Q 006824 248 PTSIQCQALPIIL-SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (630)
Q Consensus 248 ~~~~Q~~~i~~il-~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~ 326 (630)
+.|+|.+.+..+. ...+.++.+|||+|||++|.+.++......| +.++++++|-.+|+..-.+.+.+.....|
T Consensus 928 fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p------~~kvvyIap~kalvker~~Dw~~r~~~~g 1001 (1230)
T KOG0952|consen 928 FNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYP------GSKVVYIAPDKALVKERSDDWSKRDELPG 1001 (1230)
T ss_pred cCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCC------CccEEEEcCCchhhcccccchhhhcccCC
Confidence 4455665554433 2357899999999999999999888776554 67799999999999988888877766668
Q ss_pred ceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHH--ccccccCceeEEEecchhhhhcCCcHHHHHHHH-------
Q 006824 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLK--MKALTMSRVTYLVLDEADRMFDLGFEPQIRSIV------- 397 (630)
Q Consensus 327 ~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~--~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~------- 397 (630)
++++-+.|..... ...+ ..++|+|+||++...+.+ .+...+.+++.+|+||.|.+.+ +.++.++.+.
T Consensus 1002 ~k~ie~tgd~~pd--~~~v-~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~-~rgPVle~ivsr~n~~s 1077 (1230)
T KOG0952|consen 1002 IKVIELTGDVTPD--VKAV-READIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGE-DRGPVLEVIVSRMNYIS 1077 (1230)
T ss_pred ceeEeccCccCCC--hhhe-ecCceEEcccccccCccccccchhhhccccceeecccccccC-CCcceEEEEeeccccCc
Confidence 9998888876654 1222 248999999999988776 3455678999999999998653 3344333322
Q ss_pred hhcCCCCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccceEEEE------EcCCccccHHHHHHhccCCCCCC
Q 006824 398 GQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVH------VIPSDAEKLPWLLEKLPGMIDDG 471 (630)
Q Consensus 398 ~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~------~~~~~~~k~~~l~~~l~~~~~~~ 471 (630)
.+..+..+.+++|.-+ .+..+++.++...+. .... ...........+. +++....+..--...++...+..
T Consensus 1078 ~~t~~~vr~~glsta~-~na~dla~wl~~~~~-~nf~-~svrpvp~~~~i~gfp~~~~cprm~smnkpa~qaik~~sp~~ 1154 (1230)
T KOG0952|consen 1078 SQTEEPVRYLGLSTAL-ANANDLADWLNIKDM-YNFR-PSVRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIKTHSPIK 1154 (1230)
T ss_pred cccCcchhhhhHhhhh-hccHHHHHHhCCCCc-CCCC-cccccCCceEeecCCCchhcchhhhhcccHHHHHHhcCCCCC
Confidence 2233445666665433 344667777655443 1110 0111111111111 12222233444456666666778
Q ss_pred CEEEEccchhhHHHHH
Q 006824 472 DVLVFASKKTTVDEIE 487 (630)
Q Consensus 472 ~iLIF~~s~~~~~~l~ 487 (630)
++|||+.+......-+
T Consensus 1155 p~lifv~srrqtrlta 1170 (1230)
T KOG0952|consen 1155 PVLIFVSSRRQTRLTA 1170 (1230)
T ss_pred ceEEEeecccccccch
Confidence 9999998877554333
No 176
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.48 E-value=1.8e-06 Score=98.52 Aligned_cols=74 Identities=19% Similarity=0.276 Sum_probs=57.4
Q ss_pred CceEEEEcCCcccCCCCCCccEEEEeCCCCCHHHHHHHhhhcccCC-CCCeE--------EEEEeccccHHHHHHHHHHH
Q 006824 520 VYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAG-DKDGT--------AYTLVTQKEARFAGELVNSL 590 (630)
Q Consensus 520 ~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~QriGR~gR~g-~~~g~--------~~~l~~~~d~~~~~~l~~~l 590 (630)
..++|++-.++.+|.|.|+|-.+.......|...-.|.+||..|.- +..|. -.++.+.....++..|..-+
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 5789999999999999999999999998888989999999999853 22221 22344556677888888877
Q ss_pred HHc
Q 006824 591 IAA 593 (630)
Q Consensus 591 ~~~ 593 (630)
...
T Consensus 581 ~~~ 583 (986)
T PRK15483 581 NSD 583 (986)
T ss_pred Hhh
Confidence 654
No 177
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=98.45 E-value=2.9e-05 Score=80.96 Aligned_cols=81 Identities=17% Similarity=0.233 Sum_probs=54.4
Q ss_pred CCCEEEEccchhhHHHHHHHHHhCCC-------cEEEEeCCCCHHHHHHHHHHh----hcCCceEEEEc--CCcccCCCC
Q 006824 470 DGDVLVFASKKTTVDEIESQLAQKGF-------KAAALHGDKDQASRMEILQKF----KSGVYHVLIAT--DVAARGLDI 536 (630)
Q Consensus 470 ~~~iLIF~~s~~~~~~l~~~L~~~~~-------~~~~ihg~~~~~~r~~~~~~F----~~g~~~VLvaT--~~~~~Gldi 536 (630)
+++++.|.+++...+.+.......|+ +...| +.-+..+-.-++... .+|+..||++. .-+++|+|+
T Consensus 530 pdG~v~ff~sylYmesiv~~w~~~gil~ei~k~KL~fI-etpD~~ETs~al~ny~~aC~~gRGavl~sVargkVsEgidF 608 (755)
T KOG1131|consen 530 PDGIVCFFPSYLYMESIVSRWYEQGILDEIMKYKLLFI-ETPDFRETSLALANYRYACDNGRGAVLLSVARGKVSEGIDF 608 (755)
T ss_pred CCceEEEEehHHHHHHHHHHHHHHhHHHHHhhCceEEE-eCCchhhhHHHHHHHHHHhcCCCCceEEEEecCccccCccc
Confidence 46789999999988888776665543 33333 333333334444443 45788888655 566799999
Q ss_pred CCcc--EEEEeCCCCCH
Q 006824 537 KSIK--SVVNFDIARDM 551 (630)
Q Consensus 537 ~~v~--~VI~~~~p~~~ 551 (630)
..-- .||+++.|.-.
T Consensus 609 ~hhyGR~ViM~gIP~qy 625 (755)
T KOG1131|consen 609 DHHYGREVIMEGIPYQY 625 (755)
T ss_pred ccccCceEEEEeccchh
Confidence 8755 89999999743
No 178
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.37 E-value=9.8e-06 Score=89.22 Aligned_cols=74 Identities=16% Similarity=0.252 Sum_probs=59.8
Q ss_pred CceEEEEcCCcccCCCCCCccEEEEeCCCCCHHHHHHHhhhcccCC-CCCeEEEE-----------EeccccHHHHHHHH
Q 006824 520 VYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAG-DKDGTAYT-----------LVTQKEARFAGELV 587 (630)
Q Consensus 520 ~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~QriGR~gR~g-~~~g~~~~-----------l~~~~d~~~~~~l~ 587 (630)
-.++|.+--++-+|.|-|+|=++.-.....|-..=.|-+||..|.. +..|.-++ ++......++..|+
T Consensus 483 plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~Lq 562 (985)
T COG3587 483 PLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKALQ 562 (985)
T ss_pred cceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHHH
Confidence 3679999999999999999999999999999999999999999965 34454333 55666778888888
Q ss_pred HHHHHc
Q 006824 588 NSLIAA 593 (630)
Q Consensus 588 ~~l~~~ 593 (630)
.-+...
T Consensus 563 kEI~~~ 568 (985)
T COG3587 563 KEINDE 568 (985)
T ss_pred HHHHHh
Confidence 776553
No 179
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.37 E-value=5.8e-06 Score=81.43 Aligned_cols=73 Identities=21% Similarity=0.295 Sum_probs=51.5
Q ss_pred CCcHHHHHHHHHHHcCCC-EEEEeCCCChHHHHHHHHHHHHHhcCC-cccccCCCeEEEEcccHHHHHHHHHHHHH
Q 006824 247 KPTSIQCQALPIILSGRD-IIGIAKTGSGKTAAFVLPMIVHIMDQP-ELQKEEGPIGVICAPTRELAHQIYLETKK 320 (630)
Q Consensus 247 ~~~~~Q~~~i~~il~g~d-~l~~a~TGsGKT~~~~l~~l~~~~~~~-~~~~~~~~~vLil~Ptr~La~Q~~~~~~~ 320 (630)
++++.|..|+..+++... .++.||.|+|||.+ +..++.+++... ......+.++||++||...+.++...+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~-l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTT-LASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHH-HHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHH-HHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 467899999999999998 99999999999954 444455542100 11134477899999999999999888877
No 180
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.35 E-value=3.3e-06 Score=83.91 Aligned_cols=171 Identities=13% Similarity=0.107 Sum_probs=108.8
Q ss_pred CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHH----------cCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCC
Q 006824 230 CGFSTQLMHAISKQGYEKPTSIQCQALPIIL----------SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGP 299 (630)
Q Consensus 230 ~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il----------~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~ 299 (630)
+.||..+... ..++..|.+++-+.. ..+..++...||.||..+..-.++.+++.. +.
T Consensus 26 ~~lp~~~~~~------g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G-------r~ 92 (303)
T PF13872_consen 26 LHLPEEVIDS------GLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG-------RK 92 (303)
T ss_pred cCCCHHHHhc------ccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC-------CC
Confidence 3677766554 468899999986654 235788899999999977555556665432 44
Q ss_pred eEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHcc---cccc------
Q 006824 300 IGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK---ALTM------ 370 (630)
Q Consensus 300 ~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~---~~~l------ 370 (630)
+.|+|..+-.|.....+.++.+... .+.+..+..- +.. ....+ ...||++||..|...-... ...+
T Consensus 93 r~vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~~-~~~-~~~~~--~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W 167 (303)
T PF13872_consen 93 RAVWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNKF-KYG-DIIRL--KEGVLFSTYSTLISESQSGGKYRSRLDQLVDW 167 (303)
T ss_pred ceEEEECChhhhhHHHHHHHHhCCC-cccceechhh-ccC-cCCCC--CCCccchhHHHHHhHHhccCCccchHHHHHHH
Confidence 6899999999999988888877543 2322222110 000 00111 3569999999998765321 1111
Q ss_pred --C-ceeEEEecchhhhhcCCc--------HHHHHHHHhhcCCCCcEEEEeecccHHHHH
Q 006824 371 --S-RVTYLVLDEADRMFDLGF--------EPQIRSIVGQIRPDRQTLLFSATMPRKVEK 419 (630)
Q Consensus 371 --~-~i~~lVvDEah~~~~~~~--------~~~v~~i~~~l~~~~q~l~~SAT~~~~~~~ 419 (630)
. .=.+||+||||.+.+... ...+..+.+.+ |+.+++.+|||...+..+
T Consensus 168 ~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~L-P~ARvvY~SATgasep~N 226 (303)
T PF13872_consen 168 CGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRL-PNARVVYASATGASEPRN 226 (303)
T ss_pred HhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhC-CCCcEEEecccccCCCce
Confidence 1 124899999999876532 12344455556 455699999997655433
No 181
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.28 E-value=1.9e-06 Score=80.26 Aligned_cols=103 Identities=24% Similarity=0.326 Sum_probs=71.0
Q ss_pred CCCEEEEccchhhHHHHHHHHHhCCC--cEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcC--CcccCCCCCC--ccEEE
Q 006824 470 DGDVLVFASKKTTVDEIESQLAQKGF--KAAALHGDKDQASRMEILQKFKSGVYHVLIATD--VAARGLDIKS--IKSVV 543 (630)
Q Consensus 470 ~~~iLIF~~s~~~~~~l~~~L~~~~~--~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~--~~~~Gldi~~--v~~VI 543 (630)
++++|||++|+...+.+...+..... ....+.. +...+..+++.|+.+...||+++. .+.+|+|+++ ++.||
T Consensus 9 ~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~vi 86 (167)
T PF13307_consen 9 PGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAVI 86 (167)
T ss_dssp SSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhheee
Confidence 58999999999999999999986531 1223333 245788999999999999999998 8899999997 88999
Q ss_pred EeCCCCC----HH--------------------------HHHHHhhhcccCCCCCeEEEEE
Q 006824 544 NFDIARD----MD--------------------------MHVHRIGRTGRAGDKDGTAYTL 574 (630)
Q Consensus 544 ~~~~p~~----~~--------------------------~y~QriGR~gR~g~~~g~~~~l 574 (630)
..++|.. +. ...|.+||+-|..+..|.++++
T Consensus 87 i~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~ll 147 (167)
T PF13307_consen 87 IVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILL 147 (167)
T ss_dssp EES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEE
T ss_pred ecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEE
Confidence 9998842 11 1248999999987444444433
No 182
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.25 E-value=4.6e-06 Score=79.93 Aligned_cols=123 Identities=19% Similarity=0.205 Sum_probs=70.9
Q ss_pred CCcHHHHHHHHHHHcCC--CEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhh
Q 006824 247 KPTSIQCQALPIILSGR--DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS 324 (630)
Q Consensus 247 ~~~~~Q~~~i~~il~g~--d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~ 324 (630)
+|++-|.+++..++... -+++.++.|+|||.+ +..+...+.. .+.++++++||...+..+.+.+
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~-------~g~~v~~~apT~~Aa~~L~~~~------ 66 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEA-------AGKRVIGLAPTNKAAKELREKT------ 66 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHH-------TT--EEEEESSHHHHHHHHHHH------
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHh-------CCCeEEEECCcHHHHHHHHHhh------
Confidence 47889999999997543 477889999999954 3333333322 2677999999998887654441
Q ss_pred cCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHcccc----ccCceeEEEecchhhhhcCCcHHHHHHHHhhc
Q 006824 325 HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKAL----TMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI 400 (630)
Q Consensus 325 ~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~----~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l 400 (630)
++.+ .|..++......... .+...++||||||-.+. ...+..++..+
T Consensus 67 -~~~a------------------------~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~----~~~~~~ll~~~ 117 (196)
T PF13604_consen 67 -GIEA------------------------QTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVD----SRQLARLLRLA 117 (196)
T ss_dssp -TS-E------------------------EEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-B----HHHHHHHHHHS
T ss_pred -Ccch------------------------hhHHHHHhcCCcccccccccCCcccEEEEecccccC----HHHHHHHHHHH
Confidence 2222 121111111111100 14566899999999865 45677777777
Q ss_pred CC-CCcEEEEeec
Q 006824 401 RP-DRQTLLFSAT 412 (630)
Q Consensus 401 ~~-~~q~l~~SAT 412 (630)
.. ..++|++--+
T Consensus 118 ~~~~~klilvGD~ 130 (196)
T PF13604_consen 118 KKSGAKLILVGDP 130 (196)
T ss_dssp -T-T-EEEEEE-T
T ss_pred HhcCCEEEEECCc
Confidence 65 5566665444
No 183
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.18 E-value=1.3e-05 Score=85.76 Aligned_cols=84 Identities=21% Similarity=0.288 Sum_probs=67.8
Q ss_pred HHHHcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHH
Q 006824 239 AISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLET 318 (630)
Q Consensus 239 ~l~~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~ 318 (630)
.+...++.+|..-|..|+.++++..-.|+++|+|+|||.+ ...++.|+..+ ....+|+++|+.-.+.|+++.+
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvt-sa~IVyhl~~~------~~~~VLvcApSNiAVDqLaeKI 474 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVT-SATIVYHLARQ------HAGPVLVCAPSNIAVDQLAEKI 474 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceeh-hHHHHHHHHHh------cCCceEEEcccchhHHHHHHHH
Confidence 4556688899999999999999999999999999999975 45556666544 2455899999999999998888
Q ss_pred HHHhhhcCceEEEEE
Q 006824 319 KKFAKSHGIRVSAVY 333 (630)
Q Consensus 319 ~~~~~~~~~~~~~~~ 333 (630)
.+. |++++-++
T Consensus 475 h~t----gLKVvRl~ 485 (935)
T KOG1802|consen 475 HKT----GLKVVRLC 485 (935)
T ss_pred Hhc----CceEeeee
Confidence 776 67766554
No 184
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.16 E-value=8.8e-06 Score=77.51 Aligned_cols=141 Identities=17% Similarity=0.228 Sum_probs=74.7
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHH-------HHHH
Q 006824 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQI-------YLET 318 (630)
Q Consensus 246 ~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~-------~~~~ 318 (630)
...++.|..++..++...-+++.||.|+|||+.++..++..+... .-.+++|+-|+.+....+ .+.+
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g------~~~kiii~Rp~v~~~~~lGflpG~~~eK~ 76 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEG------EYDKIIITRPPVEAGEDLGFLPGDLEEKM 76 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTT------S-SEEEEEE-S--TT----SS--------
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhC------CCcEEEEEecCCCCccccccCCCCHHHHH
Confidence 456889999999999889999999999999998888888887552 245678888876432111 0000
Q ss_pred HHHhhh----cCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCcHHHHH
Q 006824 319 KKFAKS----HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIR 394 (630)
Q Consensus 319 ~~~~~~----~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~ 394 (630)
.-+..+ +... .+ ......+.....|-+.++..+.- ..+ .-.+||||||+.+. ..++.
T Consensus 77 ~p~~~p~~d~l~~~----~~----~~~~~~~~~~~~Ie~~~~~~iRG------rt~-~~~~iIvDEaQN~t----~~~~k 137 (205)
T PF02562_consen 77 EPYLRPIYDALEEL----FG----KEKLEELIQNGKIEIEPLAFIRG------RTF-DNAFIIVDEAQNLT----PEELK 137 (205)
T ss_dssp -TTTHHHHHHHTTT----S-----TTCHHHHHHTTSEEEEEGGGGTT--------B--SEEEEE-SGGG------HHHHH
T ss_pred HHHHHHHHHHHHHH----hC----hHhHHHHhhcCeEEEEehhhhcC------ccc-cceEEEEecccCCC----HHHHH
Confidence 000000 0000 01 11122233334555555432211 112 23799999999965 66889
Q ss_pred HHHhhcCCCCcEEEEee
Q 006824 395 SIVGQIRPDRQTLLFSA 411 (630)
Q Consensus 395 ~i~~~l~~~~q~l~~SA 411 (630)
.++..+..+.+++++--
T Consensus 138 ~ilTR~g~~skii~~GD 154 (205)
T PF02562_consen 138 MILTRIGEGSKIIITGD 154 (205)
T ss_dssp HHHTTB-TT-EEEEEE-
T ss_pred HHHcccCCCcEEEEecC
Confidence 99999988888777543
No 185
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.11 E-value=6.9e-05 Score=72.04 Aligned_cols=152 Identities=16% Similarity=0.253 Sum_probs=98.7
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHc---CCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeE
Q 006824 225 KTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILS---GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIG 301 (630)
Q Consensus 225 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~---g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~v 301 (630)
.+|.....|..++=.+.. + .-+++.|.+.+..+.+ |.+.+.+.-||.|||.+ ++|++..++... ..-+
T Consensus 3 ~~w~p~~~P~wLl~E~e~-~-iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg------~~Lv 73 (229)
T PF12340_consen 3 RNWDPMEYPDWLLFEIES-N-ILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADG------SRLV 73 (229)
T ss_pred CCCCchhChHHHHHHHHc-C-ceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCC------CcEE
Confidence 456666777777666543 2 4689999999999885 57999999999999986 889998887653 3446
Q ss_pred EEEcccHHHHHHHHHHHHHHhhh-cCceEEEEEC--CCChH----HHHH----HHHcCCcEEEeChHHHHHHHHcc----
Q 006824 302 VICAPTRELAHQIYLETKKFAKS-HGIRVSAVYG--GMSKL----DQFK----ELKAGCEIVIATPGRLIDMLKMK---- 366 (630)
Q Consensus 302 Lil~Ptr~La~Q~~~~~~~~~~~-~~~~~~~~~g--g~~~~----~~~~----~l~~~~dIiv~Tp~~L~~~l~~~---- 366 (630)
.+++| ++|..|....+...+.. .+-++..+.- ..... ..+. .......|+++||+.+..+.-..
T Consensus 74 rviVp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l 152 (229)
T PF12340_consen 74 RVIVP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERL 152 (229)
T ss_pred EEEcC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHH
Confidence 67777 57999999888765543 2333332221 11111 1122 22334679999999886543110
Q ss_pred ---c-----------cccCceeEEEecchhhhhc
Q 006824 367 ---A-----------LTMSRVTYLVLDEADRMFD 386 (630)
Q Consensus 367 ---~-----------~~l~~i~~lVvDEah~~~~ 386 (630)
. ..+.....-|+||+|.++.
T Consensus 153 ~~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 153 QDGKPEEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred HhcCHHHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 0 1133445578899997654
No 186
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.99 E-value=2.3e-07 Score=102.08 Aligned_cols=77 Identities=25% Similarity=0.407 Sum_probs=63.1
Q ss_pred cHHHHHHhccCCC-CCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhc---CCceEEEEcCCcc
Q 006824 456 KLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKS---GVYHVLIATDVAA 531 (630)
Q Consensus 456 k~~~l~~~l~~~~-~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~---g~~~VLvaT~~~~ 531 (630)
|+..|...++.+. ..++|+||.......+.+..++...+ ....+.|..+-..|..++..|+. ....+|++|.+.+
T Consensus 616 k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g 694 (696)
T KOG0383|consen 616 KLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGG 694 (696)
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeeccccc
Confidence 4444555554443 34699999999999999999999988 89999999999999999999984 3577999999887
Q ss_pred cC
Q 006824 532 RG 533 (630)
Q Consensus 532 ~G 533 (630)
.|
T Consensus 695 ~g 696 (696)
T KOG0383|consen 695 LG 696 (696)
T ss_pred CC
Confidence 65
No 187
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.89 E-value=0.00011 Score=82.94 Aligned_cols=68 Identities=18% Similarity=0.230 Sum_probs=54.2
Q ss_pred CCCcHHHHHHHHHHHcC-CCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHH
Q 006824 246 EKPTSIQCQALPIILSG-RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (630)
Q Consensus 246 ~~~~~~Q~~~i~~il~g-~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 321 (630)
..+++.|..|+..++.. ..+++.||+|+|||.+ +..++.++... ++++|+++||...+.++.+.+...
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t-~~~ii~~~~~~-------g~~VLv~a~sn~Avd~l~e~l~~~ 224 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRT-LVELIRQLVKR-------GLRVLVTAPSNIAVDNLLERLALC 224 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHH-HHHHHHHHHHc-------CCCEEEEcCcHHHHHHHHHHHHhC
Confidence 46899999999998876 6788999999999965 44445555432 568999999999999888777653
No 188
>PRK10536 hypothetical protein; Provisional
Probab=97.89 E-value=0.00027 Score=69.39 Aligned_cols=141 Identities=14% Similarity=0.120 Sum_probs=80.2
Q ss_pred CCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHH-----------H
Q 006824 244 GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELA-----------H 312 (630)
Q Consensus 244 ~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La-----------~ 312 (630)
++...+..|...+.++.++.-+++.|++|+|||+..+..++..+... .-.+++|.=|+.+.. +
T Consensus 56 ~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~------~~~kIiI~RP~v~~ge~LGfLPG~~~e 129 (262)
T PRK10536 56 PILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHK------DVDRIIVTRPVLQADEDLGFLPGDIAE 129 (262)
T ss_pred cccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcC------CeeEEEEeCCCCCchhhhCcCCCCHHH
Confidence 44667889999999999988999999999999987666666555432 133456665654322 1
Q ss_pred HHHHHHHHHhhhcCceEEEEECCCChHHHHHHHH--cCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCcH
Q 006824 313 QIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELK--AGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFE 390 (630)
Q Consensus 313 Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~--~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~ 390 (630)
.+.-.+.-+...+... .+. .....+. ....|-|.....+ +.. .+ .-++||||||+++. .
T Consensus 130 K~~p~~~pi~D~L~~~----~~~----~~~~~~~~~~~~~Iei~~l~ym----RGr--tl-~~~~vIvDEaqn~~----~ 190 (262)
T PRK10536 130 KFAPYFRPVYDVLVRR----LGA----SFMQYCLRPEIGKVEIAPFAYM----RGR--TF-ENAVVILDEAQNVT----A 190 (262)
T ss_pred HHHHHHHHHHHHHHHH----hCh----HHHHHHHHhccCcEEEecHHHh----cCC--cc-cCCEEEEechhcCC----H
Confidence 1111111111111100 011 1122221 1223444443222 211 12 34799999999855 4
Q ss_pred HHHHHHHhhcCCCCcEEEE
Q 006824 391 PQIRSIVGQIRPDRQTLLF 409 (630)
Q Consensus 391 ~~v~~i~~~l~~~~q~l~~ 409 (630)
.++..++..+..+.++|+.
T Consensus 191 ~~~k~~ltR~g~~sk~v~~ 209 (262)
T PRK10536 191 AQMKMFLTRLGENVTVIVN 209 (262)
T ss_pred HHHHHHHhhcCCCCEEEEe
Confidence 6888888888877766653
No 189
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.83 E-value=8.7e-05 Score=78.10 Aligned_cols=108 Identities=19% Similarity=0.202 Sum_probs=67.7
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHH
Q 006824 264 DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK 343 (630)
Q Consensus 264 d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~ 343 (630)
-+++.|..|||||+++ +.++..+. ....+..++++++...|...+...+...... +
T Consensus 3 v~~I~G~aGTGKTvla-~~l~~~l~-----~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~----------~-------- 58 (352)
T PF09848_consen 3 VILITGGAGTGKTVLA-LNLAKELQ-----NSEEGKKVLYLCGNHPLRNKLREQLAKKYNP----------K-------- 58 (352)
T ss_pred EEEEEecCCcCHHHHH-HHHHHHhh-----ccccCCceEEEEecchHHHHHHHHHhhhccc----------c--------
Confidence 3689999999999863 33444431 1233667899999999998777666554300 0
Q ss_pred HHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCC-------cHHHHHHHHhh
Q 006824 344 ELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG-------FEPQIRSIVGQ 399 (630)
Q Consensus 344 ~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~-------~~~~v~~i~~~ 399 (630)
.....+..+..+...+.........+++|||||||+|...+ ...++..++..
T Consensus 59 ----~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 59 ----LKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred ----hhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 01223344444444333223345689999999999998731 24667777665
No 190
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.82 E-value=5e-05 Score=81.10 Aligned_cols=66 Identities=23% Similarity=0.369 Sum_probs=51.7
Q ss_pred CCCcHHHHHHHHHHHcCCC-EEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHH
Q 006824 246 EKPTSIQCQALPIILSGRD-IIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETK 319 (630)
Q Consensus 246 ~~~~~~Q~~~i~~il~g~d-~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~ 319 (630)
..+.+-|.+|+....+.++ .++.||+|+|||.+. .-++..+.++ +.++||++||...+..+.+.+.
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~Tl-vEiI~qlvk~-------~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTL-VEIISQLVKQ-------KKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceeeH-HHHHHHHHHc-------CCeEEEEcCchHHHHHHHHHhc
Confidence 3577899999999988854 688999999999763 3444555443 6789999999999999888543
No 191
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.78 E-value=0.00011 Score=81.60 Aligned_cols=103 Identities=14% Similarity=0.212 Sum_probs=66.0
Q ss_pred CCEEEEccchhhHHHHHHHHHhC-------CCcEEEEeCCCCHHHHHHHHHHhhcC--------CceEEEEcCCcccCCC
Q 006824 471 GDVLVFASKKTTVDEIESQLAQK-------GFKAAALHGDKDQASRMEILQKFKSG--------VYHVLIATDVAARGLD 535 (630)
Q Consensus 471 ~~iLIF~~s~~~~~~l~~~L~~~-------~~~~~~ihg~~~~~~r~~~~~~F~~g--------~~~VLvaT~~~~~Gld 535 (630)
.++|||.+++...+.+..++... +.+- .+-+=.+..+-.+++..|.++ ..-+.||---+++|+|
T Consensus 562 ~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~-l~vEPr~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEGlD 640 (945)
T KOG1132|consen 562 YGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKK-LVVEPRSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEGLD 640 (945)
T ss_pred cceEEeccchHHHHHHHHHHHcchHHHHhhcccC-ceeccCCccchHHHHHHHHHHhhCccccceEEEEEecccccCCCC
Confidence 35999999999888886665442 2222 222222344445566666442 2334566677789999
Q ss_pred CCC--ccEEEEeCCCCCH--------------------------------------HHHHHHhhhcccCCCCCeEEEEE
Q 006824 536 IKS--IKSVVNFDIARDM--------------------------------------DMHVHRIGRTGRAGDKDGTAYTL 574 (630)
Q Consensus 536 i~~--v~~VI~~~~p~~~--------------------------------------~~y~QriGR~gR~g~~~g~~~~l 574 (630)
+.+ .+.||..++|.-+ ...-|.+||+.|.-+.-|.++++
T Consensus 641 FsD~~~RaVI~tGlPyP~~~D~~V~lK~~y~D~~~~~~g~~s~~lsg~eWY~~qA~RAvNQAiGRviRHR~D~Gav~l~ 719 (945)
T KOG1132|consen 641 FSDDNGRAVIITGLPYPPVMDPRVKLKKQYLDENSSLKGAKSQLLSGQEWYSQQAYRAVNQAIGRVIRHRNDYGAVILC 719 (945)
T ss_pred ccccCCceeEEecCCCCCCCCHHHHHHHHhhhhhccccccccccccchHHHHhhHHHHHHHHHHHHHhhhcccceeeEe
Confidence 986 7789998887521 01248999999987666766633
No 192
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.71 E-value=0.0004 Score=77.56 Aligned_cols=142 Identities=19% Similarity=0.199 Sum_probs=87.0
Q ss_pred cHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCce
Q 006824 249 TSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIR 328 (630)
Q Consensus 249 ~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~ 328 (630)
.+.|+.|+-..+..+-+++.|++|+|||.+ +..++..+.... ......+++++||...|..+.+.+.......++.
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~-v~~ll~~l~~~~---~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~ 229 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTT-VAKLLAALIQLA---DGERCRIRLAAPTGKAAARLTESLGKALRQLPLT 229 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHH-HHHHHHHHHHhc---CCCCcEEEEECCcHHHHHHHHHHHHhhhhccccc
Confidence 589999999999999999999999999965 333344333211 1123568899999999988887766544322211
Q ss_pred EEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHH------HccccccCceeEEEecchhhhhcCCcHHHHHHHHhhcCC
Q 006824 329 VSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDML------KMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRP 402 (630)
Q Consensus 329 ~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l------~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~ 402 (630)
. . +......-..|--+|+... ..+..+.-.+++||||||-.+- ...+..++..+++
T Consensus 230 ~-----------~---~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd----~~lm~~ll~al~~ 291 (615)
T PRK10875 230 D-----------E---QKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD----LPMMARLIDALPP 291 (615)
T ss_pred h-----------h---hhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc----HHHHHHHHHhccc
Confidence 0 0 0000111122332322211 0111122356899999998743 5566778888888
Q ss_pred CCcEEEEeec
Q 006824 403 DRQTLLFSAT 412 (630)
Q Consensus 403 ~~q~l~~SAT 412 (630)
..++|++--.
T Consensus 292 ~~rlIlvGD~ 301 (615)
T PRK10875 292 HARVIFLGDR 301 (615)
T ss_pred CCEEEEecch
Confidence 8888887543
No 193
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.71 E-value=0.00043 Score=77.13 Aligned_cols=142 Identities=20% Similarity=0.231 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCceE
Q 006824 250 SIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRV 329 (630)
Q Consensus 250 ~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~ 329 (630)
+.|+.|+..++.++-+++.|+.|+|||.+ +..++..+..... ...++++++++||--.|..+.+.+......+...
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~-v~~ll~~l~~~~~--~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~- 223 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTT-VARLLLALVKQSP--KQGKLRIALAAPTGKAAARLAESLRKAVKNLAAA- 223 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHH-HHHHHHHHHHhcc--ccCCCcEEEECCcHHHHHHHHHHHHhhhcccccc-
Confidence 79999999999999999999999999964 3333433332211 0113579999999988888777665543221110
Q ss_pred EEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHH------ccccccCceeEEEecchhhhhcCCcHHHHHHHHhhcCCC
Q 006824 330 SAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLK------MKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPD 403 (630)
Q Consensus 330 ~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~------~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~ 403 (630)
. .+.....+-..|..+|+.... ....+...+++||||||=.+- ...+..++..+++.
T Consensus 224 --------~-----~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd----~~l~~~ll~al~~~ 286 (586)
T TIGR01447 224 --------E-----ALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD----LPLMAKLLKALPPN 286 (586)
T ss_pred --------h-----hhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC----HHHHHHHHHhcCCC
Confidence 0 000011122334444332211 011122357899999998643 44677788888888
Q ss_pred CcEEEEeec
Q 006824 404 RQTLLFSAT 412 (630)
Q Consensus 404 ~q~l~~SAT 412 (630)
.++|++-=.
T Consensus 287 ~rlIlvGD~ 295 (586)
T TIGR01447 287 TKLILLGDK 295 (586)
T ss_pred CEEEEECCh
Confidence 888877433
No 194
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.60 E-value=0.0006 Score=78.12 Aligned_cols=131 Identities=21% Similarity=0.164 Sum_probs=78.2
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhc
Q 006824 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (630)
Q Consensus 246 ~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~ 325 (630)
..+++-|.+|+..+..++-+++.|+.|+|||.+ +-.+..++... +....+++++||-..|..+.+..
T Consensus 322 ~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~--l~~i~~~~~~~----~~~~~v~l~ApTg~AA~~L~e~~------- 388 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQHKVVILTGGPGTGKTTI--TRAIIELAEEL----GGLLPVGLAAPTGRAAKRLGEVT------- 388 (720)
T ss_pred CCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHH--HHHHHHHHHHc----CCCceEEEEeCchHHHHHHHHhc-------
Confidence 579999999999999999999999999999954 33333333221 11156888999988886543221
Q ss_pred CceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCcHHHHHHHHhhcCCCCc
Q 006824 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 405 (630)
Q Consensus 326 ~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q 405 (630)
|.... ... .+... .++.... .........++||||||+.+- ...+..++..++...+
T Consensus 389 g~~a~------Tih----~lL~~------~~~~~~~---~~~~~~~~~~llIvDEaSMvd----~~~~~~Ll~~~~~~~r 445 (720)
T TIGR01448 389 GLTAS------TIH----RLLGY------GPDTFRH---NHLEDPIDCDLLIVDESSMMD----TWLALSLLAALPDHAR 445 (720)
T ss_pred CCccc------cHH----HHhhc------cCCccch---hhhhccccCCEEEEeccccCC----HHHHHHHHHhCCCCCE
Confidence 22110 000 11000 0000000 000112357899999999864 3455677777887888
Q ss_pred EEEEeec
Q 006824 406 TLLFSAT 412 (630)
Q Consensus 406 ~l~~SAT 412 (630)
+|++--+
T Consensus 446 lilvGD~ 452 (720)
T TIGR01448 446 LLLVGDT 452 (720)
T ss_pred EEEECcc
Confidence 8876433
No 195
>PF13245 AAA_19: Part of AAA domain
Probab=97.46 E-value=0.00049 Score=54.71 Aligned_cols=53 Identities=21% Similarity=0.286 Sum_probs=37.0
Q ss_pred CCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHH
Q 006824 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLET 318 (630)
Q Consensus 262 g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~ 318 (630)
.+-+++.+|.|||||.+ ++.++.++.... ... +.++|+++||+..+.++.+.+
T Consensus 10 ~~~~vv~g~pGtGKT~~-~~~~i~~l~~~~--~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTT-LAARIAELLAAR--ADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHHHHHh--cCC-CCeEEEECCCHHHHHHHHHHH
Confidence 34455699999999965 444555554221 012 567999999999999887776
No 196
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.45 E-value=0.0013 Score=59.18 Aligned_cols=93 Identities=16% Similarity=0.238 Sum_probs=64.2
Q ss_pred hHHHHHHHHHhCCC------cEEEEeCCCCHHHHHHHHHHhhcCC-ceEEEEcCCcccCCCCCC--ccEEEEeCCCCC--
Q 006824 482 TVDEIESQLAQKGF------KAAALHGDKDQASRMEILQKFKSGV-YHVLIATDVAARGLDIKS--IKSVVNFDIARD-- 550 (630)
Q Consensus 482 ~~~~l~~~L~~~~~------~~~~ihg~~~~~~r~~~~~~F~~g~-~~VLvaT~~~~~Gldi~~--v~~VI~~~~p~~-- 550 (630)
..+.+...+...+. ....+..+.+..+...+++.|+... ..||++|..+.+|+|+++ ++.||+.++|..
T Consensus 3 ~m~~v~~~~~~~~~~~~l~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~ 82 (141)
T smart00492 3 YMESFVQYWKENGILENINKNLLLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYP 82 (141)
T ss_pred HHHHHHHHHHHcCchhhHhcCCeEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCC
Confidence 34555666655443 2344555566667889999998754 379999988999999998 678999887741
Q ss_pred --H---------------------------HHHHHHhhhcccCCCCCeEEEEE
Q 006824 551 --M---------------------------DMHVHRIGRTGRAGDKDGTAYTL 574 (630)
Q Consensus 551 --~---------------------------~~y~QriGR~gR~g~~~g~~~~l 574 (630)
+ ....|.+||+-|..+..|.++++
T Consensus 83 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~l~ 135 (141)
T smart00492 83 DSPILKARLELLRDKGQIRPFDFVSLPDAMRTLAQCVGRLIRGANDYGVVVIA 135 (141)
T ss_pred CCHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCccccCcCceEEEEEE
Confidence 1 12248889999987555554443
No 197
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.42 E-value=0.00066 Score=67.50 Aligned_cols=82 Identities=22% Similarity=0.419 Sum_probs=64.1
Q ss_pred HHHHHhhcCCceEEEEcCCcccCCCCCC--------ccEEEEeCCCCCHHHHHHHhhhcccCCCCCeEEEEEeccc---c
Q 006824 511 EILQKFKSGVYHVLIATDVAARGLDIKS--------IKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQK---E 579 (630)
Q Consensus 511 ~~~~~F~~g~~~VLvaT~~~~~Gldi~~--------v~~VI~~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~~---d 579 (630)
...+.|++|+..|+|.+++++.|+.+.. -+.-|...+||+....+|..||++|.|+..+-.|.++... +
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE 131 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGE 131 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHH
Confidence 5567899999999999999999988763 3445678999999999999999999996556556655432 5
Q ss_pred HHHHHHHHHHHHH
Q 006824 580 ARFAGELVNSLIA 592 (630)
Q Consensus 580 ~~~~~~l~~~l~~ 592 (630)
.+++..+.+.|..
T Consensus 132 ~Rfas~va~rL~s 144 (278)
T PF13871_consen 132 RRFASTVARRLES 144 (278)
T ss_pred HHHHHHHHHHHhh
Confidence 5666666666655
No 198
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.37 E-value=0.00077 Score=59.78 Aligned_cols=37 Identities=22% Similarity=0.387 Sum_probs=23.2
Q ss_pred eEEEecchhhhhcCCcHHHHHHHHhhcCCCCcEEEEeecc
Q 006824 374 TYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATM 413 (630)
Q Consensus 374 ~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q~l~~SAT~ 413 (630)
.+|||||+|++. . ...+..+...++...-.+++++++
T Consensus 89 ~~lviDe~~~l~--~-~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 89 VLLVIDEADHLF--S-DEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp EEEEEETTHHHH--T-HHHHHHHHHHTCSCBEEEEEEESS
T ss_pred eEEEEeChHhcC--C-HHHHHHHHHHHhCCCCeEEEEECh
Confidence 789999999974 2 444555544444444455566664
No 199
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.35 E-value=0.0031 Score=72.68 Aligned_cols=122 Identities=18% Similarity=0.165 Sum_probs=74.8
Q ss_pred CCCcHHHHHHHHHHHcC-CCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhh
Q 006824 246 EKPTSIQCQALPIILSG-RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS 324 (630)
Q Consensus 246 ~~~~~~Q~~~i~~il~g-~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~ 324 (630)
..+++-|..|+..++.+ +-+++.|+.|+|||.+ +-.+..++.. .+..+++++||--.+..+.+.
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtl--l~~i~~~~~~------~g~~V~~~ApTg~Aa~~L~~~------- 415 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTM--LKAAREAWEA------AGYRVIGAALSGKAAEGLQAE------- 415 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHH--HHHHHHHHHh------CCCeEEEEeCcHHHHHHHHhc-------
Confidence 46899999999999874 6679999999999954 4444444432 267799999998776544311
Q ss_pred cCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCcHHHHHHHHhhc-CCC
Q 006824 325 HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI-RPD 403 (630)
Q Consensus 325 ~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l-~~~ 403 (630)
.|+... |-.++...+......+...++||||||-.+... .+..++... ...
T Consensus 416 ~g~~a~------------------------Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~~----~~~~Ll~~~~~~~ 467 (744)
T TIGR02768 416 SGIESR------------------------TLASLEYAWANGRDLLSDKDVLVIDEAGMVGSR----QMARVLKEAEEAG 467 (744)
T ss_pred cCCcee------------------------eHHHHHhhhccCcccCCCCcEEEEECcccCCHH----HHHHHHHHHHhcC
Confidence 132211 111221111222234567899999999875432 334444422 345
Q ss_pred CcEEEEe
Q 006824 404 RQTLLFS 410 (630)
Q Consensus 404 ~q~l~~S 410 (630)
.++|++-
T Consensus 468 ~kliLVG 474 (744)
T TIGR02768 468 AKVVLVG 474 (744)
T ss_pred CEEEEEC
Confidence 5566554
No 200
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.35 E-value=0.0012 Score=74.30 Aligned_cols=138 Identities=20% Similarity=0.191 Sum_probs=87.2
Q ss_pred cCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCC-EEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEccc
Q 006824 229 DCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRD-IIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPT 307 (630)
Q Consensus 229 ~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~d-~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Pt 307 (630)
...+.+.+... -+..++.-|++|+-.++..+| .++.|=+|+|||.+.+ .++.-+.. .|.+||+.+-|
T Consensus 655 ~~~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~-~LIkiL~~-------~gkkVLLtsyT 722 (1100)
T KOG1805|consen 655 SKVLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTIS-LLIKILVA-------LGKKVLLTSYT 722 (1100)
T ss_pred ccccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHH-HHHHHHHH-------cCCeEEEEehh
Confidence 34455555543 225688899999998887765 5788889999996533 33333322 27789999999
Q ss_pred HHHHHHHHHHHHHHhhhcCceEEEEECCCChH-----------------HHHHHHHcCCcEEEeChHHHHHHHHcccccc
Q 006824 308 RELAHQIYLETKKFAKSHGIRVSAVYGGMSKL-----------------DQFKELKAGCEIVIATPGRLIDMLKMKALTM 370 (630)
Q Consensus 308 r~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~-----------------~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l 370 (630)
...+..+.-.++.+ ++...-+..+.... ...........||.||--++.+.+- ..
T Consensus 723 hsAVDNILiKL~~~----~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf----~~ 794 (1100)
T KOG1805|consen 723 HSAVDNILIKLKGF----GIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLF----VN 794 (1100)
T ss_pred hHHHHHHHHHHhcc----CcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhh----hc
Confidence 87777665444443 33322222222222 2233444567888888776665443 34
Q ss_pred CceeEEEecchhhhhc
Q 006824 371 SRVTYLVLDEADRMFD 386 (630)
Q Consensus 371 ~~i~~lVvDEah~~~~ 386 (630)
+.++|+|||||-.|..
T Consensus 795 R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 795 RQFDYCIIDEASQILL 810 (1100)
T ss_pred cccCEEEEcccccccc
Confidence 5699999999998653
No 201
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.33 E-value=0.0019 Score=75.49 Aligned_cols=124 Identities=20% Similarity=0.160 Sum_probs=76.4
Q ss_pred CCCcHHHHHHHHHHHcCCC-EEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhh
Q 006824 246 EKPTSIQCQALPIILSGRD-IIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS 324 (630)
Q Consensus 246 ~~~~~~Q~~~i~~il~g~d-~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~ 324 (630)
..|++-|.+++..++.+++ +++.+..|+|||.+ +-.+..++.. .|.+++.++||--.+..+.+ .
T Consensus 345 ~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~--l~~~~~~~e~------~G~~V~~~ApTGkAA~~L~e-------~ 409 (988)
T PRK13889 345 LVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM--LGVAREAWEA------AGYEVRGAALSGIAAENLEG-------G 409 (988)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH--HHHHHHHHHH------cCCeEEEecCcHHHHHHHhh-------c
Confidence 3699999999999998654 68999999999964 3334443322 37789999999876654321 1
Q ss_pred cCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCcHHHHHHHHhhc-CCC
Q 006824 325 HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI-RPD 403 (630)
Q Consensus 325 ~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l-~~~ 403 (630)
.|+.. .|..+|..-...+...+...++||||||-.+. ...+..++... ...
T Consensus 410 tGi~a------------------------~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~----~~~m~~LL~~a~~~g 461 (988)
T PRK13889 410 SGIAS------------------------RTIASLEHGWGQGRDLLTSRDVLVIDEAGMVG----TRQLERVLSHAADAG 461 (988)
T ss_pred cCcch------------------------hhHHHHHhhhcccccccccCcEEEEECcccCC----HHHHHHHHHhhhhCC
Confidence 12211 12222221111223346678899999999754 33445555543 345
Q ss_pred CcEEEEeec
Q 006824 404 RQTLLFSAT 412 (630)
Q Consensus 404 ~q~l~~SAT 412 (630)
.++|++-=+
T Consensus 462 arvVLVGD~ 470 (988)
T PRK13889 462 AKVVLVGDP 470 (988)
T ss_pred CEEEEECCH
Confidence 666666433
No 202
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=97.27 E-value=0.0019 Score=58.20 Aligned_cols=93 Identities=19% Similarity=0.293 Sum_probs=62.1
Q ss_pred hHHHHHHHHHhCCC---cEEEEeCCCCHHHHHHHHHHhhcCCc---eEEEEcCC--cccCCCCCC--ccEEEEeCCCCC-
Q 006824 482 TVDEIESQLAQKGF---KAAALHGDKDQASRMEILQKFKSGVY---HVLIATDV--AARGLDIKS--IKSVVNFDIARD- 550 (630)
Q Consensus 482 ~~~~l~~~L~~~~~---~~~~ihg~~~~~~r~~~~~~F~~g~~---~VLvaT~~--~~~Gldi~~--v~~VI~~~~p~~- 550 (630)
..+.+.+.+...+. ....+..+....+...+++.|++... .||+++.. +++|+|+++ ++.||+.++|..
T Consensus 3 ~m~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~ 82 (142)
T smart00491 3 YLEQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPN 82 (142)
T ss_pred HHHHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCC
Confidence 45566677765543 22333334444455788899987544 69999877 899999998 689999888741
Q ss_pred ---HH---------------------------HHHHHhhhcccCCCCCeEEEEE
Q 006824 551 ---MD---------------------------MHVHRIGRTGRAGDKDGTAYTL 574 (630)
Q Consensus 551 ---~~---------------------------~y~QriGR~gR~g~~~g~~~~l 574 (630)
+. ...|.+||+-|..+..|.++++
T Consensus 83 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~Qa~GR~iR~~~D~g~i~l~ 136 (142)
T smart00491 83 PDSPILRARLEYLDEKGGIRPFDEVYLFDAMRALAQAIGRAIRHKNDYGVVVLL 136 (142)
T ss_pred CCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhCccccCccceEEEEEE
Confidence 11 1248999999987555544443
No 203
>PRK08181 transposase; Validated
Probab=97.22 E-value=0.0053 Score=61.55 Aligned_cols=121 Identities=12% Similarity=0.182 Sum_probs=65.6
Q ss_pred CcHHHHHHH----HHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhh
Q 006824 248 PTSIQCQAL----PIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (630)
Q Consensus 248 ~~~~Q~~~i----~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~ 323 (630)
+...|..++ .++-.+++++++||+|+|||.... .+...+... |..++++ +..+|+.++.... .
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~-Aia~~a~~~-------g~~v~f~-~~~~L~~~l~~a~----~ 154 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAA-AIGLALIEN-------GWRVLFT-RTTDLVQKLQVAR----R 154 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHH-HHHHHHHHc-------CCceeee-eHHHHHHHHHHHH----h
Confidence 344455444 345578899999999999995322 222233221 4445444 4555665442110 0
Q ss_pred hcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCc-HHHHHHHHhhcCC
Q 006824 324 SHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGF-EPQIRSIVGQIRP 402 (630)
Q Consensus 324 ~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~-~~~v~~i~~~l~~ 402 (630)
. .+...+.. .+.++++|||||.+.+....+ ...+..+++....
T Consensus 155 --~---------------------------~~~~~~l~-------~l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~ 198 (269)
T PRK08181 155 --E---------------------------LQLESAIA-------KLDKFDLLILDDLAYVTKDQAETSVLFELISARYE 198 (269)
T ss_pred --C---------------------------CcHHHHHH-------HHhcCCEEEEeccccccCCHHHHHHHHHHHHHHHh
Confidence 0 11111212 245788999999997643322 2345566655433
Q ss_pred CCcEEEEeecccHHH
Q 006824 403 DRQTLLFSATMPRKV 417 (630)
Q Consensus 403 ~~q~l~~SAT~~~~~ 417 (630)
...+|+.|-..+...
T Consensus 199 ~~s~IiTSN~~~~~w 213 (269)
T PRK08181 199 RRSILITANQPFGEW 213 (269)
T ss_pred CCCEEEEcCCCHHHH
Confidence 456777666665553
No 204
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.17 E-value=0.00079 Score=71.09 Aligned_cols=60 Identities=23% Similarity=0.371 Sum_probs=46.7
Q ss_pred CCcHHHHHHHHHH------HcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHH
Q 006824 247 KPTSIQCQALPII------LSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQI 314 (630)
Q Consensus 247 ~~~~~Q~~~i~~i------l~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~ 314 (630)
+|++-|+.++..+ ..+..+++.|+-|+||| |++-.+.+.+.. .+..+++++||-..|..+
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs--~l~~~i~~~~~~------~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKS--FLIKAIIDYLRS------RGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChh--HHHHHHHHHhcc------ccceEEEecchHHHHHhc
Confidence 4678899998888 67889999999999999 456555555433 367799999998777654
No 205
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.09 E-value=0.0044 Score=62.89 Aligned_cols=142 Identities=16% Similarity=0.239 Sum_probs=85.1
Q ss_pred CCCCCcHHHHHHHHHHHcC--CCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHH-------
Q 006824 244 GYEKPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQI------- 314 (630)
Q Consensus 244 ~~~~~~~~Q~~~i~~il~g--~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~------- 314 (630)
|+...+..|.-|+..++.- .=+.+.++.|||||+.++.+.+..++.++. -.+++|.=|+..+...+
T Consensus 225 Gi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~-----y~KiiVtRp~vpvG~dIGfLPG~e 299 (436)
T COG1875 225 GIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKR-----YRKIIVTRPTVPVGEDIGFLPGTE 299 (436)
T ss_pred ccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhh-----hceEEEecCCcCcccccCcCCCch
Confidence 6666677888889888855 357889999999999999999988877542 33466766765554322
Q ss_pred HHHHHHHhhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHcccccc--------Cc--eeEEEecchhhh
Q 006824 315 YLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTM--------SR--VTYLVLDEADRM 384 (630)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l--------~~--i~~lVvDEah~~ 384 (630)
.+.+.-|+++ ..+....+.+..+ ++-+.|..++.+..+.+ ++ -.+||||||+.+
T Consensus 300 EeKm~PWmq~-------------i~DnLE~L~~~~~---~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNL 363 (436)
T COG1875 300 EEKMGPWMQA-------------IFDNLEVLFSPNE---PGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNL 363 (436)
T ss_pred hhhccchHHH-------------HHhHHHHHhcccc---cchHHHHHHHhccceeeeeeeeecccccccceEEEehhhcc
Confidence 0001111110 1111111221111 12333444433332211 12 258999999996
Q ss_pred hcCCcHHHHHHHHhhcCCCCcEEEEe
Q 006824 385 FDLGFEPQIRSIVGQIRPDRQTLLFS 410 (630)
Q Consensus 385 ~~~~~~~~v~~i~~~l~~~~q~l~~S 410 (630)
. ..+++.|+..+.+..++|++.
T Consensus 364 T----pheikTiltR~G~GsKIVl~g 385 (436)
T COG1875 364 T----PHELKTILTRAGEGSKIVLTG 385 (436)
T ss_pred C----HHHHHHHHHhccCCCEEEEcC
Confidence 5 678999999999888877653
No 206
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.09 E-value=0.0017 Score=66.92 Aligned_cols=123 Identities=15% Similarity=0.062 Sum_probs=76.0
Q ss_pred CcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCc
Q 006824 248 PTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGI 327 (630)
Q Consensus 248 ~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~ 327 (630)
+++-|.+++.. ....+++.|..|||||.+.+.-++..+...+ ....++|+|++|+..|..+...+...+.....
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~----~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~ 74 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG----VPPERILVLTFTNAAAQEMRERIRELLEEEQQ 74 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS----STGGGEEEEESSHHHHHHHHHHHHHHHHHCCH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc----CChHHheecccCHHHHHHHHHHHHHhcCcccc
Confidence 57889999988 6778999999999999875444444443321 23455999999999999999999887654321
Q ss_pred eEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccC--ceeEEEecchh
Q 006824 328 RVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMS--RVTYLVLDEAD 382 (630)
Q Consensus 328 ~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~--~i~~lVvDEah 382 (630)
.. ............-..+.|+|...+...+-+...... .-.+-++|+..
T Consensus 75 ~~------~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 75 ES------SDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp CC------TT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred cc------cccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 10 000111122223467899999888764433222211 23456777776
No 207
>PRK04296 thymidine kinase; Provisional
Probab=97.06 E-value=0.0041 Score=59.26 Aligned_cols=110 Identities=14% Similarity=0.177 Sum_probs=60.9
Q ss_pred CCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEccc---HHHHHHHHHHHHHHhhhcCceEEEEECCCChH
Q 006824 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPT---RELAHQIYLETKKFAKSHGIRVSAVYGGMSKL 339 (630)
Q Consensus 263 ~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Pt---r~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~ 339 (630)
.=.++.+++|+|||... +-++..+.. .+.+++|+-|. +.... .+...+++....
T Consensus 3 ~i~litG~~GsGKTT~~-l~~~~~~~~-------~g~~v~i~k~~~d~~~~~~-------~i~~~lg~~~~~-------- 59 (190)
T PRK04296 3 KLEFIYGAMNSGKSTEL-LQRAYNYEE-------RGMKVLVFKPAIDDRYGEG-------KVVSRIGLSREA-------- 59 (190)
T ss_pred EEEEEECCCCCHHHHHH-HHHHHHHHH-------cCCeEEEEeccccccccCC-------cEecCCCCcccc--------
Confidence 34688999999999753 344443322 26678888662 22211 111111221110
Q ss_pred HHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCcHHHHHHHHhhcCCCCcEEEEeecc
Q 006824 340 DQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATM 413 (630)
Q Consensus 340 ~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q~l~~SAT~ 413 (630)
+.+..+..+...+.. .-..+++|||||+|.+. ..++..++..+.+....+++++--
T Consensus 60 -----------~~~~~~~~~~~~~~~---~~~~~dvviIDEaq~l~----~~~v~~l~~~l~~~g~~vi~tgl~ 115 (190)
T PRK04296 60 -----------IPVSSDTDIFELIEE---EGEKIDCVLIDEAQFLD----KEQVVQLAEVLDDLGIPVICYGLD 115 (190)
T ss_pred -----------eEeCChHHHHHHHHh---hCCCCCEEEEEccccCC----HHHHHHHHHHHHHcCCeEEEEecC
Confidence 123444555554433 23468899999998742 345666777755555666666553
No 208
>PRK14974 cell division protein FtsY; Provisional
Probab=97.03 E-value=0.0065 Score=62.84 Aligned_cols=132 Identities=23% Similarity=0.292 Sum_probs=75.0
Q ss_pred CCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcc-c-H-HHHHHHHHHHHHHhhhcCceEEEEECCCChH
Q 006824 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAP-T-R-ELAHQIYLETKKFAKSHGIRVSAVYGGMSKL 339 (630)
Q Consensus 263 ~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~P-t-r-~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~ 339 (630)
+-+++++++|+|||.+ +..+.+.+.. .+.+++++.. | | ....|+ ..++...++.+.....+....
T Consensus 141 ~vi~~~G~~GvGKTTt--iakLA~~l~~------~g~~V~li~~Dt~R~~a~eqL----~~~a~~lgv~v~~~~~g~dp~ 208 (336)
T PRK14974 141 VVIVFVGVNGTGKTTT--IAKLAYYLKK------NGFSVVIAAGDTFRAGAIEQL----EEHAERLGVKVIKHKYGADPA 208 (336)
T ss_pred eEEEEEcCCCCCHHHH--HHHHHHHHHH------cCCeEEEecCCcCcHHHHHHH----HHHHHHcCCceecccCCCCHH
Confidence 4578999999999975 2223333322 2445655543 2 2 334444 334444465543322222111
Q ss_pred HHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhh-cCCcHHHHHHHHhhcCCCCcEEEEeecccHHHH
Q 006824 340 DQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF-DLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVE 418 (630)
Q Consensus 340 ~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~-~~~~~~~v~~i~~~l~~~~q~l~~SAT~~~~~~ 418 (630)
.. +.+.+... ....+++|+||.+.++. +......+..+...++++..++.++||......
T Consensus 209 ~v-----------------~~~ai~~~--~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~ 269 (336)
T PRK14974 209 AV-----------------AYDAIEHA--KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAV 269 (336)
T ss_pred HH-----------------HHHHHHHH--HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHH
Confidence 10 11222110 12356799999999875 334566777777778888889999999876665
Q ss_pred HHHHHHc
Q 006824 419 KLAREIL 425 (630)
Q Consensus 419 ~l~~~~~ 425 (630)
..+..|.
T Consensus 270 ~~a~~f~ 276 (336)
T PRK14974 270 EQAREFN 276 (336)
T ss_pred HHHHHHH
Confidence 5565554
No 209
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.03 E-value=0.001 Score=71.04 Aligned_cols=167 Identities=17% Similarity=0.178 Sum_probs=84.3
Q ss_pred EEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHH-HhhhcCceEEEEECCCChH----HH
Q 006824 267 GIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKK-FAKSHGIRVSAVYGGMSKL----DQ 341 (630)
Q Consensus 267 ~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~-~~~~~~~~~~~~~gg~~~~----~~ 341 (630)
..+.||||||++ +..++.+++.+. -...|+.|..-.........+.. ....+-+.-...+++.... ..
T Consensus 2 f~matgsgkt~~-ma~lil~~y~kg------yr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~ 74 (812)
T COG3421 2 FEMATGSGKTLV-MAGLILECYKKG------YRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNN 74 (812)
T ss_pred cccccCCChhhH-HHHHHHHHHHhc------hhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecc
Confidence 457899999986 445555666543 23367777655555443322211 1110111111112222111 11
Q ss_pred HHHHHcCCcEEEeChHHHHHHHHccc---c---ccCceeEEEe-cchhhhhcC-------------CcHHHHHHHHhhcC
Q 006824 342 FKELKAGCEIVIATPGRLIDMLKMKA---L---TMSRVTYLVL-DEADRMFDL-------------GFEPQIRSIVGQIR 401 (630)
Q Consensus 342 ~~~l~~~~dIiv~Tp~~L~~~l~~~~---~---~l~~i~~lVv-DEah~~~~~-------------~~~~~v~~i~~~l~ 401 (630)
+.....+..|+++|.++|...+.+.. . .+....+|.+ ||||++-.. .|...+...++ -+
T Consensus 75 fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~-~n 153 (812)
T COG3421 75 FSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALE-QN 153 (812)
T ss_pred cCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHh-cC
Confidence 12223457899999999987775422 1 2445555544 999997321 12222222222 24
Q ss_pred CCCcEEEEeecccHHHHHHHHHHcCCCeEEEEcccccccccc
Q 006824 402 PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDI 443 (630)
Q Consensus 402 ~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i 443 (630)
++.-++.||||.|.+ .. +..-..+.+.+..+-........
T Consensus 154 kd~~~lef~at~~k~-k~-v~~ky~dkiv~~y~lk~f~e~gy 193 (812)
T COG3421 154 KDNLLLEFSATIPKE-KS-VEDKYEDKIVVTYTLKQFSEDGY 193 (812)
T ss_pred CCceeehhhhcCCcc-cc-HHHHhccceEEeeeHHHhhhhcc
Confidence 566678899999844 22 33333455555554433333333
No 210
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.01 E-value=0.065 Score=68.03 Aligned_cols=237 Identities=14% Similarity=0.189 Sum_probs=128.4
Q ss_pred CCcHHHHHHHHHHHcC--CCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhh
Q 006824 247 KPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS 324 (630)
Q Consensus 247 ~~~~~Q~~~i~~il~g--~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~ 324 (630)
.+++-|.+++..++.. +-.++.++.|+|||.+ +-.+..++.. .|..+++++||-..+.++.+.....+
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~--l~~l~~~~~~------~G~~V~~lAPTgrAA~~L~e~~g~~A-- 498 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI--AQLLLHLASE------QGYEIQIITAGSLSAQELRQKIPRLA-- 498 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH--HHHHHHHHHh------cCCeEEEEeCCHHHHHHHHHHhcchh--
Confidence 5889999999998876 5689999999999954 4444444432 36789999999987766554322111
Q ss_pred cCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCcHHHHHHHHhhc-CCC
Q 006824 325 HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI-RPD 403 (630)
Q Consensus 325 ~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l-~~~ 403 (630)
. ........+.. .....|..++. .....+...++||||||-.+. ...+..++... +.+
T Consensus 499 -----~------Ti~~~l~~l~~--~~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl~----~~~~~~Ll~~a~~~g 557 (1960)
T TIGR02760 499 -----S------TFITWVKNLFN--DDQDHTVQGLL----DKSSPFSNKDIFVVDEANKLS----NNELLKLIDKAEQHN 557 (1960)
T ss_pred -----h------hHHHHHHhhcc--cccchhHHHhh----cccCCCCCCCEEEEECCCCCC----HHHHHHHHHHHhhcC
Confidence 0 00111111111 11222333333 122345678899999999754 44666666655 467
Q ss_pred CcEEEEeecc--c----HHHHHHHHHHcCCCeEEEEcccccccccceEEEEEcCCccccHHHHHHhccCCCC-CCCEEEE
Q 006824 404 RQTLLFSATM--P----RKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMID-DGDVLVF 476 (630)
Q Consensus 404 ~q~l~~SAT~--~----~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~~-~~~iLIF 476 (630)
.++|++.-+- + -++..++.... -+.. ...........+ .+ .-.....+...+...+..... ...++|+
T Consensus 558 arvVlvGD~~QL~sV~aG~~f~~L~~~g-v~t~-~l~~i~rq~~~v--~i-~~~~~~~r~~~ia~~y~~L~~~r~~tliv 632 (1960)
T TIGR02760 558 SKLILLNDSAQRQGMSAGSAIDLLKEGG-VTTY-AWVDTKQQKASV--EI-SEAVDKLRVDYIASAWLDLTPDRQNSQVL 632 (1960)
T ss_pred CEEEEEcChhhcCccccchHHHHHHHCC-CcEE-EeecccccCcce--ee-eccCchHHHHHHHHHHHhcccccCceEEE
Confidence 7888775541 1 12223333221 1111 111111111111 11 111223444455555544433 3368999
Q ss_pred ccchhhHHHHHHHHHh----CC------CcEEEEe-CCCCHHHHHHHHHHhhcCC
Q 006824 477 ASKKTTVDEIESQLAQ----KG------FKAAALH-GDKDQASRMEILQKFKSGV 520 (630)
Q Consensus 477 ~~s~~~~~~l~~~L~~----~~------~~~~~ih-g~~~~~~r~~~~~~F~~g~ 520 (630)
..+..+...|....+. .| +.+..+. -.++..++... ..|+.|.
T Consensus 633 ~~t~~dr~~Ln~~iR~~L~~~G~L~~~~~~~~~L~p~~lt~~e~r~~-~~Yr~Gd 686 (1960)
T TIGR02760 633 ATTHREQQDLTQIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRRNA-AHYKQGM 686 (1960)
T ss_pred cCCcHHHHHHHHHHHHHHHHcCCcCCCceEEEEeccCCCCHHHHhhH-hhcCCCC
Confidence 9998887777666543 22 2333443 35677777644 6666654
No 211
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.96 E-value=0.013 Score=69.32 Aligned_cols=137 Identities=18% Similarity=0.134 Sum_probs=82.1
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHHc-CCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHH
Q 006824 232 FSTQLMHAISKQGYEKPTSIQCQALPIILS-GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTREL 310 (630)
Q Consensus 232 l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~-g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~L 310 (630)
+++..+......+ ..|++-|.+++..+.. ++-+++.|+.|+|||.+ +-.+..++.. .|.+++.++||-..
T Consensus 367 v~~~~l~a~~~~~-~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~--l~~~~~~~e~------~G~~V~g~ApTgkA 437 (1102)
T PRK13826 367 VREAVLAATFARH-ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM--MKAAREAWEA------AGYRVVGGALAGKA 437 (1102)
T ss_pred CCHHHHHHHHhcC-CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH--HHHHHHHHHH------cCCeEEEEcCcHHH
Confidence 4444444433333 4699999999998864 46689999999999954 4344444332 36779999999777
Q ss_pred HHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCcH
Q 006824 311 AHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFE 390 (630)
Q Consensus 311 a~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~ 390 (630)
+..+.+ ..|+... |..++..........+..-++||||||-.+. .
T Consensus 438 A~~L~e-------~~Gi~a~------------------------TIas~ll~~~~~~~~l~~~~vlVIDEAsMv~----~ 482 (1102)
T PRK13826 438 AEGLEK-------EAGIQSR------------------------TLSSWELRWNQGRDQLDNKTVFVLDEAGMVA----S 482 (1102)
T ss_pred HHHHHH-------hhCCCee------------------------eHHHHHhhhccCccCCCCCcEEEEECcccCC----H
Confidence 654422 1233322 1111111111122346677899999999754 3
Q ss_pred HHHHHHHhhcC-CCCcEEEEeec
Q 006824 391 PQIRSIVGQIR-PDRQTLLFSAT 412 (630)
Q Consensus 391 ~~v~~i~~~l~-~~~q~l~~SAT 412 (630)
..+..++.... ...++|++.=+
T Consensus 483 ~~m~~Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 483 RQMALFVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred HHHHHHHHHHHhcCCEEEEECCH
Confidence 45555665553 45666666443
No 212
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.84 E-value=0.017 Score=61.05 Aligned_cols=131 Identities=17% Similarity=0.162 Sum_probs=71.4
Q ss_pred CCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEE-EEccc-HHHHHHHHHHHHHHhhhcCceEEEEECCCChH
Q 006824 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGV-ICAPT-RELAHQIYLETKKFAKSHGIRVSAVYGGMSKL 339 (630)
Q Consensus 262 g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vL-il~Pt-r~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~ 339 (630)
.+.++++||||+|||.+..-.+....... ...+.++. |-+-| |.-+..+ ++.++...++.+..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~----~~~g~~V~lit~Dt~R~aa~eQ---L~~~a~~lgvpv~~-------- 238 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINS----DDKSLNIKIITIDNYRIGAKKQ---IQTYGDIMGIPVKA-------- 238 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhh----ccCCCeEEEEeccCccHHHHHH---HHHHhhcCCcceEe--------
Confidence 45789999999999976432222221111 01233344 44433 4444322 55555544554322
Q ss_pred HHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCC-cHHHHHHHHhhcCCC-CcEEEEeecccHH-
Q 006824 340 DQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG-FEPQIRSIVGQIRPD-RQTLLFSATMPRK- 416 (630)
Q Consensus 340 ~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~-~~~~v~~i~~~l~~~-~q~l~~SAT~~~~- 416 (630)
+.++..+...+. .+..+++|+||++.++.... ....+..++..+.+. ..++.+|||...+
T Consensus 239 -------------~~~~~~l~~~L~----~~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~ 301 (388)
T PRK12723 239 -------------IESFKDLKEEIT----QSKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSD 301 (388)
T ss_pred -------------eCcHHHHHHHHH----HhCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHH
Confidence 223444444443 24578999999999865211 234555566655543 4678899998643
Q ss_pred HHHHHHHH
Q 006824 417 VEKLAREI 424 (630)
Q Consensus 417 ~~~l~~~~ 424 (630)
+.+.+..|
T Consensus 302 ~~~~~~~~ 309 (388)
T PRK12723 302 VKEIFHQF 309 (388)
T ss_pred HHHHHHHh
Confidence 44555555
No 213
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.80 E-value=0.016 Score=51.73 Aligned_cols=17 Identities=24% Similarity=0.464 Sum_probs=15.2
Q ss_pred CCCEEEEeCCCChHHHH
Q 006824 262 GRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 262 g~d~l~~a~TGsGKT~~ 278 (630)
++.+++.|++|+|||..
T Consensus 19 ~~~v~i~G~~G~GKT~l 35 (151)
T cd00009 19 PKNLLLYGPPGTGKTTL 35 (151)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 67899999999999953
No 214
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=96.78 E-value=0.0044 Score=71.72 Aligned_cols=153 Identities=20% Similarity=0.157 Sum_probs=90.1
Q ss_pred cCCCEEEEeCCCChHHHHHHHHHHHHHhcCCc----------ccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEE
Q 006824 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPE----------LQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVS 330 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~----------~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~ 330 (630)
.|+++++...+|+|||..-+...+.+.-+.-. .......-.|||||. ++..||..++.+.+... +++.
T Consensus 373 ~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~-lKv~ 450 (1394)
T KOG0298|consen 373 HGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL-LKVL 450 (1394)
T ss_pred CCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc-ceEE
Confidence 44677999999999998755444443211100 001113447999996 67779999999998753 4554
Q ss_pred EEECCCChHH--HHHHHHcCCcEEEeChHHHHHHHHcccc--------------ccC------ceeEEEecchhhhhcCC
Q 006824 331 AVYGGMSKLD--QFKELKAGCEIVIATPGRLIDMLKMKAL--------------TMS------RVTYLVLDEADRMFDLG 388 (630)
Q Consensus 331 ~~~gg~~~~~--~~~~l~~~~dIiv~Tp~~L~~~l~~~~~--------------~l~------~i~~lVvDEah~~~~~~ 388 (630)
. |-|..... .-..+ -.+|||+|||..|..-+..... ... .+=-|+||||+.+-.
T Consensus 451 ~-Y~Girk~~~~~~~el-~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves-- 526 (1394)
T KOG0298|consen 451 L-YFGIRKTFWLSPFEL-LQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES-- 526 (1394)
T ss_pred E-EechhhhcccCchhh-hccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc--
Confidence 4 44332211 11222 3499999999999866543211 010 123489999997543
Q ss_pred cHHHHHHHHhhcCCCCcEEEEeecccHHHHHH
Q 006824 389 FEPQIRSIVGQIRPDRQTLLFSATMPRKVEKL 420 (630)
Q Consensus 389 ~~~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l 420 (630)
.......++..+. ....-..|+||-..+..+
T Consensus 527 ssS~~a~M~~rL~-~in~W~VTGTPiq~Iddl 557 (1394)
T KOG0298|consen 527 SSSAAAEMVRRLH-AINRWCVTGTPIQKIDDL 557 (1394)
T ss_pred hHHHHHHHHHHhh-hhceeeecCCchhhhhhh
Confidence 2444555554443 233567799976554443
No 215
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=96.75 E-value=0.0033 Score=61.80 Aligned_cols=87 Identities=24% Similarity=0.358 Sum_probs=65.2
Q ss_pred cCCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECC-CChHHHHHHHHc-CCcEEEeChHHHHHHHHccccccCce
Q 006824 296 EEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGG-MSKLDQFKELKA-GCEIVIATPGRLIDMLKMKALTMSRV 373 (630)
Q Consensus 296 ~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg-~~~~~~~~~l~~-~~dIiv~Tp~~L~~~l~~~~~~l~~i 373 (630)
...|.+|||+..---|..+...++.|... +..++-++.- .+..++..-+.. .++|.||||+||..+++.+.+.++.+
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~~k-~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l 202 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFKGK-DCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNL 202 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhccC-CchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccC
Confidence 45799999999876677777777776311 2233333322 356677777764 58999999999999999999999999
Q ss_pred eEEEecchhh
Q 006824 374 TYLVLDEADR 383 (630)
Q Consensus 374 ~~lVvDEah~ 383 (630)
.+||||--|.
T Consensus 203 ~~ivlD~s~~ 212 (252)
T PF14617_consen 203 KRIVLDWSYL 212 (252)
T ss_pred eEEEEcCCcc
Confidence 9999997663
No 216
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.66 E-value=0.012 Score=61.59 Aligned_cols=131 Identities=20% Similarity=0.175 Sum_probs=66.4
Q ss_pred cCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEc-cc-HHHHHHHHHHHHHHhhhcCceEEEEECCCCh
Q 006824 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICA-PT-RELAHQIYLETKKFAKSHGIRVSAVYGGMSK 338 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~-Pt-r~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~ 338 (630)
.|..+++++|||+|||.+....+...+... ...++.+++ .+ |.-+ .+.++.|+...++.+..+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~------G~~~V~lit~D~~R~ga---~EqL~~~a~~~gv~~~~~------ 200 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRF------GASKVALLTTDSYRIGG---HEQLRIFGKILGVPVHAV------ 200 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhc------CCCeEEEEecccccccH---HHHHHHHHHHcCCceEec------
Confidence 567899999999999976433332222221 112343333 22 2212 244555555455544332
Q ss_pred HHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcC-CcHHHHHHHHhhcCCCCcEEEEeecccHH-
Q 006824 339 LDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDL-GFEPQIRSIVGQIRPDRQTLLFSATMPRK- 416 (630)
Q Consensus 339 ~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~-~~~~~v~~i~~~l~~~~q~l~~SAT~~~~- 416 (630)
.++..+...+. .+.+.++|+||.+-+.... .....+..+.....+...++++|||....
T Consensus 201 ---------------~~~~~l~~~l~----~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~ 261 (374)
T PRK14722 201 ---------------KDGGDLQLALA----ELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDT 261 (374)
T ss_pred ---------------CCcccHHHHHH----HhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHH
Confidence 23333333332 2446688999988653211 11223333323233445588899998654
Q ss_pred HHHHHHHHc
Q 006824 417 VEKLAREIL 425 (630)
Q Consensus 417 ~~~l~~~~~ 425 (630)
+...+..|.
T Consensus 262 l~evi~~f~ 270 (374)
T PRK14722 262 LNEVVQAYR 270 (374)
T ss_pred HHHHHHHHH
Confidence 344555553
No 217
>PRK06921 hypothetical protein; Provisional
Probab=96.65 E-value=0.025 Score=56.86 Aligned_cols=45 Identities=22% Similarity=0.211 Sum_probs=26.2
Q ss_pred cCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHH
Q 006824 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQ 313 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q 313 (630)
.+..+++.|++|+|||.. +..+...+..+ .+..++++ +..++..+
T Consensus 116 ~~~~l~l~G~~G~GKThL-a~aia~~l~~~------~g~~v~y~-~~~~l~~~ 160 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHL-LTAAANELMRK------KGVPVLYF-PFVEGFGD 160 (266)
T ss_pred CCCeEEEECCCCCcHHHH-HHHHHHHHhhh------cCceEEEE-EHHHHHHH
Confidence 467899999999999953 22333333321 14445555 44455444
No 218
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.57 E-value=0.018 Score=55.04 Aligned_cols=131 Identities=20% Similarity=0.220 Sum_probs=69.5
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcc-cHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHH
Q 006824 265 IIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAP-TRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK 343 (630)
Q Consensus 265 ~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~P-tr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~ 343 (630)
++++||||+|||.+..=.+ .++..+ +...+||-+- .|.-+ .+.++.++...++.+............
T Consensus 4 i~lvGptGvGKTTt~aKLA-a~~~~~------~~~v~lis~D~~R~ga---~eQL~~~a~~l~vp~~~~~~~~~~~~~-- 71 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLA-ARLKLK------GKKVALISADTYRIGA---VEQLKTYAEILGVPFYVARTESDPAEI-- 71 (196)
T ss_dssp EEEEESTTSSHHHHHHHHH-HHHHHT------T--EEEEEESTSSTHH---HHHHHHHHHHHTEEEEESSTTSCHHHH--
T ss_pred EEEECCCCCchHhHHHHHH-HHHhhc------cccceeecCCCCCccH---HHHHHHHHHHhccccchhhcchhhHHH--
Confidence 6889999999997633222 222211 1233444443 33333 344666666556655433222111111
Q ss_pred HHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhh-cCCcHHHHHHHHhhcCCCCcEEEEeecccHHHHHHHH
Q 006824 344 ELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF-DLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAR 422 (630)
Q Consensus 344 ~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~-~~~~~~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~ 422 (630)
+...++. ...+++++|+||=+-+.. +......+..++..+.+..-.+.+|||........+.
T Consensus 72 ---------------~~~~l~~--~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~ 134 (196)
T PF00448_consen 72 ---------------AREALEK--FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQAL 134 (196)
T ss_dssp ---------------HHHHHHH--HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHH
T ss_pred ---------------HHHHHHH--HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHH
Confidence 1122221 123457889999886532 1223456677777777888889999998766444444
Q ss_pred HH
Q 006824 423 EI 424 (630)
Q Consensus 423 ~~ 424 (630)
.+
T Consensus 135 ~~ 136 (196)
T PF00448_consen 135 AF 136 (196)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 219
>PRK06526 transposase; Provisional
Probab=96.56 E-value=0.011 Score=58.86 Aligned_cols=47 Identities=13% Similarity=0.030 Sum_probs=28.2
Q ss_pred cCceeEEEecchhhhhcCCc-HHHHHHHHhhcCCCCcEEEEeecccHH
Q 006824 370 MSRVTYLVLDEADRMFDLGF-EPQIRSIVGQIRPDRQTLLFSATMPRK 416 (630)
Q Consensus 370 l~~i~~lVvDEah~~~~~~~-~~~v~~i~~~l~~~~q~l~~SAT~~~~ 416 (630)
+..+++|||||+|....... ...+..++........+|+.|...+..
T Consensus 157 l~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~~~ 204 (254)
T PRK06526 157 LGRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFGR 204 (254)
T ss_pred hccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCHHH
Confidence 34678999999997542221 223445554433335677777776654
No 220
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.46 E-value=0.051 Score=56.70 Aligned_cols=135 Identities=19% Similarity=0.274 Sum_probs=78.3
Q ss_pred HcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChH
Q 006824 260 LSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKL 339 (630)
Q Consensus 260 l~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~ 339 (630)
.+++-+.+.||||.|||.+..=.+....+ ..++...+||-+-|--.+. ++.++.++.-+++.+.
T Consensus 201 ~~~~vi~LVGPTGVGKTTTlAKLAar~~~-----~~~~~kVaiITtDtYRIGA--~EQLk~Ya~im~vp~~--------- 264 (407)
T COG1419 201 EQKRVIALVGPTGVGKTTTLAKLAARYVM-----LKKKKKVAIITTDTYRIGA--VEQLKTYADIMGVPLE--------- 264 (407)
T ss_pred ccCcEEEEECCCCCcHHHHHHHHHHHHHh-----hccCcceEEEEeccchhhH--HHHHHHHHHHhCCceE---------
Confidence 34889999999999999763222222221 1223344566666543332 3456666665565443
Q ss_pred HHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhh-cCCcHHHHHHHHhhcCCCCcEEEEeecccHH-H
Q 006824 340 DQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF-DLGFEPQIRSIVGQIRPDRQTLLFSATMPRK-V 417 (630)
Q Consensus 340 ~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~-~~~~~~~v~~i~~~l~~~~q~l~~SAT~~~~-~ 417 (630)
++-||.-|...+. .+..+++|.||=+=+-. +.....++..++....+..-.+.+|||.... +
T Consensus 265 ------------vv~~~~el~~ai~----~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dl 328 (407)
T COG1419 265 ------------VVYSPKELAEAIE----ALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDL 328 (407)
T ss_pred ------------EecCHHHHHHHHH----HhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHH
Confidence 4445655555544 45566788888665421 2223455666666665556678889987543 5
Q ss_pred HHHHHHHcC
Q 006824 418 EKLAREILS 426 (630)
Q Consensus 418 ~~l~~~~~~ 426 (630)
...+..|..
T Consensus 329 kei~~~f~~ 337 (407)
T COG1419 329 KEIIKQFSL 337 (407)
T ss_pred HHHHHHhcc
Confidence 555666544
No 221
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.42 E-value=0.063 Score=53.06 Aligned_cols=49 Identities=24% Similarity=0.329 Sum_probs=31.3
Q ss_pred cCceeEEEecchhhhhcCCcHH-HHHHHHhh-cCCCCcEEEEeecccHHHH
Q 006824 370 MSRVTYLVLDEADRMFDLGFEP-QIRSIVGQ-IRPDRQTLLFSATMPRKVE 418 (630)
Q Consensus 370 l~~i~~lVvDEah~~~~~~~~~-~v~~i~~~-l~~~~q~l~~SAT~~~~~~ 418 (630)
+..+++|||||++......|.. .+..|++. +.....+++.|-..+..+.
T Consensus 160 l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~ 210 (244)
T PRK07952 160 LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMT 210 (244)
T ss_pred hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHH
Confidence 4578899999999865443443 34445543 3346778887776655544
No 222
>PRK05642 DNA replication initiation factor; Validated
Probab=96.39 E-value=0.018 Score=56.79 Aligned_cols=46 Identities=17% Similarity=0.347 Sum_probs=29.5
Q ss_pred cCceeEEEecchhhhhcC-CcHHHHHHHHhhcCCCCcEEEEeecccH
Q 006824 370 MSRVTYLVLDEADRMFDL-GFEPQIRSIVGQIRPDRQTLLFSATMPR 415 (630)
Q Consensus 370 l~~i~~lVvDEah~~~~~-~~~~~v~~i~~~l~~~~q~l~~SAT~~~ 415 (630)
+..++++|||++|.+... .+...+..+++.+......++++++.++
T Consensus 95 ~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 95 LEQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred hhhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 335678999999987543 3445577777776554444556666443
No 223
>PRK08116 hypothetical protein; Validated
Probab=96.38 E-value=0.067 Score=53.85 Aligned_cols=48 Identities=13% Similarity=0.239 Sum_probs=29.1
Q ss_pred cCceeEEEecchhh--hhcCCcHHHHHHHHhh-cCCCCcEEEEeecccHHHH
Q 006824 370 MSRVTYLVLDEADR--MFDLGFEPQIRSIVGQ-IRPDRQTLLFSATMPRKVE 418 (630)
Q Consensus 370 l~~i~~lVvDEah~--~~~~~~~~~v~~i~~~-l~~~~q~l~~SAT~~~~~~ 418 (630)
+.+.++||||+++. ..++. ...+..+++. +....++|+.|...+.++.
T Consensus 176 l~~~dlLviDDlg~e~~t~~~-~~~l~~iin~r~~~~~~~IiTsN~~~~eL~ 226 (268)
T PRK08116 176 LVNADLLILDDLGAERDTEWA-REKVYNIIDSRYRKGLPTIVTTNLSLEELK 226 (268)
T ss_pred hcCCCEEEEecccCCCCCHHH-HHHHHHHHHHHHHCCCCEEEECCCCHHHHH
Confidence 45678999999964 22232 3345555554 3455677777776666544
No 224
>PHA02533 17 large terminase protein; Provisional
Probab=96.36 E-value=0.021 Score=63.02 Aligned_cols=148 Identities=16% Similarity=0.075 Sum_probs=85.7
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcC
Q 006824 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (630)
Q Consensus 247 ~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~ 326 (630)
.|.|+|...+..+..+|-.++..+=..|||.+....++...+..+ +..+++++|++..|..+.+.++.......
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~------~~~v~i~A~~~~QA~~vF~~ik~~ie~~P 132 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNK------DKNVGILAHKASMAAEVLDRTKQAIELLP 132 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCC------CCEEEEEeCCHHHHHHHHHHHHHHHHhCH
Confidence 588999999988766666677777888999776655554444322 56899999999999998888876654321
Q ss_pred --ceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCcHHHHHHHHhhcCC--
Q 006824 327 --IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRP-- 402 (630)
Q Consensus 327 --~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~-- 402 (630)
+....... + .....+.+|+.|.+.|-. .....-....++|+||+|.+.+ +...+..+...+..
T Consensus 133 ~l~~~~i~~~--~--~~~I~l~NGS~I~~lss~-------~~t~rG~~~~~liiDE~a~~~~--~~e~~~ai~p~lasg~ 199 (534)
T PHA02533 133 DFLQPGIVEW--N--KGSIELENGSKIGAYASS-------PDAVRGNSFAMIYIDECAFIPN--FIDFWLAIQPVISSGR 199 (534)
T ss_pred HHhhcceeec--C--ccEEEeCCCCEEEEEeCC-------CCccCCCCCceEEEeccccCCC--HHHHHHHHHHHHHcCC
Confidence 11100000 0 011122456666555421 1111122467899999997643 22333333333332
Q ss_pred CCcEEEEeecc
Q 006824 403 DRQTLLFSATM 413 (630)
Q Consensus 403 ~~q~l~~SAT~ 413 (630)
..+++++|++.
T Consensus 200 ~~r~iiiSTp~ 210 (534)
T PHA02533 200 SSKIIITSTPN 210 (534)
T ss_pred CceEEEEECCC
Confidence 23455555553
No 225
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=96.34 E-value=0.0091 Score=65.53 Aligned_cols=150 Identities=19% Similarity=0.166 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHc-----C----CCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHH
Q 006824 250 SIQCQALPIILS-----G----RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKK 320 (630)
Q Consensus 250 ~~Q~~~i~~il~-----g----~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~ 320 (630)
|+|+-.+-.++. | +.+++.-+=|-|||......++.+++-. ...++.++++++++..|..+++.+..
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~----g~~~~~i~~~A~~~~QA~~~f~~~~~ 76 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD----GEPGAEIYCAANTRDQAKIVFDEAKK 76 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC----CccCceEEEEeCCHHHHHHHHHHHHH
Confidence 578877777762 2 4678888999999976555555555433 23467899999999999999999988
Q ss_pred HhhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHcccc--ccCceeEEEecchhhhhcCCcHHHHHHHHh
Q 006824 321 FAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKAL--TMSRVTYLVLDEADRMFDLGFEPQIRSIVG 398 (630)
Q Consensus 321 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~--~l~~i~~lVvDEah~~~~~~~~~~v~~i~~ 398 (630)
+............ ...... ....|.....+.+...+..... .-.+..++|+||+|.+.+......+..-..
T Consensus 77 ~i~~~~~l~~~~~------~~~~~~-~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~~~~~l~~g~~ 149 (477)
T PF03354_consen 77 MIEASPELRKRKK------PKIIKS-NKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDELYDALESGMG 149 (477)
T ss_pred HHHhChhhccchh------hhhhhh-hceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHHHHHHHHhhhc
Confidence 8764221110000 000000 0122333322333322222211 123578999999999765433333443333
Q ss_pred hcCCCCcEEEEee
Q 006824 399 QIRPDRQTLLFSA 411 (630)
Q Consensus 399 ~l~~~~q~l~~SA 411 (630)
. +++.+++++|.
T Consensus 150 ~-r~~pl~~~IST 161 (477)
T PF03354_consen 150 A-RPNPLIIIIST 161 (477)
T ss_pred c-CCCceEEEEeC
Confidence 3 45677776654
No 226
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.29 E-value=0.097 Score=56.27 Aligned_cols=129 Identities=21% Similarity=0.232 Sum_probs=67.1
Q ss_pred CCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEE-ccc-HHHHHHHHHHHHHHhhhcCceEEEEECCCChH
Q 006824 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC-APT-RELAHQIYLETKKFAKSHGIRVSAVYGGMSKL 339 (630)
Q Consensus 262 g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil-~Pt-r~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~ 339 (630)
++.+++.+|||+|||.+.+-.+....... .+.++.+| +-+ |.-+. +.+..++...++.+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~------~g~~V~li~~D~~r~~a~---eqL~~~a~~~~vp~~--------- 282 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLY------GKKKVALITLDTYRIGAV---EQLKTYAKIMGIPVE--------- 282 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc------CCCeEEEEECCccHHHHH---HHHHHHHHHhCCceE---------
Confidence 56789999999999975433222222011 13334444 433 33222 334444443344332
Q ss_pred HHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhc-CCcHHHHHHHHh-hcCCCCcEEEEeecccH-H
Q 006824 340 DQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFD-LGFEPQIRSIVG-QIRPDRQTLLFSATMPR-K 416 (630)
Q Consensus 340 ~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~-~~~~~~v~~i~~-~l~~~~q~l~~SAT~~~-~ 416 (630)
.+.++..+...+. .+..+++||||-+-+... ......+..++. ...+....+++|||... .
T Consensus 283 ------------~~~~~~~l~~~l~----~~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~ 346 (424)
T PRK05703 283 ------------VVYDPKELAKALE----QLRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYED 346 (424)
T ss_pred ------------ccCCHHhHHHHHH----HhCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHH
Confidence 2234444444443 234679999998865321 112234555555 22344567889998764 4
Q ss_pred HHHHHHHH
Q 006824 417 VEKLAREI 424 (630)
Q Consensus 417 ~~~l~~~~ 424 (630)
+...+..|
T Consensus 347 l~~~~~~f 354 (424)
T PRK05703 347 LKDIYKHF 354 (424)
T ss_pred HHHHHHHh
Confidence 45555554
No 227
>PRK12377 putative replication protein; Provisional
Probab=96.28 E-value=0.027 Score=55.84 Aligned_cols=49 Identities=16% Similarity=0.198 Sum_probs=28.8
Q ss_pred cCceeEEEecchhhhhcCCc-HHHHHHHHhh-cCCCCcEEEEeecccHHHH
Q 006824 370 MSRVTYLVLDEADRMFDLGF-EPQIRSIVGQ-IRPDRQTLLFSATMPRKVE 418 (630)
Q Consensus 370 l~~i~~lVvDEah~~~~~~~-~~~v~~i~~~-l~~~~q~l~~SAT~~~~~~ 418 (630)
+..+++|||||++......+ ...+..|++. +.....+++.|--.+..+.
T Consensus 161 l~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl~~~~l~ 211 (248)
T PRK12377 161 LCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLNHEAMS 211 (248)
T ss_pred hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHH
Confidence 56899999999965432222 2234444443 3445678877765554443
No 228
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=96.17 E-value=0.031 Score=64.72 Aligned_cols=109 Identities=17% Similarity=0.174 Sum_probs=72.3
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhc
Q 006824 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (630)
Q Consensus 246 ~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~ 325 (630)
..|+|-|.+++.. ....+++.|..|||||.+ +..-+.+++.... -...++|+|+.|+..|..+.+.+.++....
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~-L~~Ria~Li~~~~---v~p~~IL~lTFTnkAA~em~~Rl~~~~~~~ 76 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRV-LTHRIAWLLSVEN---ASPHSIMAVTFTNKAAAEMRHRIGALLGTS 76 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHH-HHHHHHHHHHcCC---CCHHHeEeeeccHHHHHHHHHHHHHHhccc
Confidence 4689999999865 346899999999999986 4455555554321 123469999999999999988888875310
Q ss_pred CceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHH-HHccc--cccCceeEEEecchhh
Q 006824 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDM-LKMKA--LTMSRVTYLVLDEADR 383 (630)
Q Consensus 326 ~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~-l~~~~--~~l~~i~~lVvDEah~ 383 (630)
...+.|+|...+... ++... ..+ .-.+-|+|+.+.
T Consensus 77 ----------------------~~~~~i~TfHs~~~~iLr~~~~~~g~-~~~f~i~d~~d~ 114 (715)
T TIGR01075 77 ----------------------ARGMWIGTFHGLAHRLLRAHHLDAGL-PQDFQILDSDDQ 114 (715)
T ss_pred ----------------------ccCcEEEcHHHHHHHHHHHHHHHhCC-CCCCeecCHHHH
Confidence 124678888877643 33221 111 113457787764
No 229
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.15 E-value=0.012 Score=51.96 Aligned_cols=41 Identities=24% Similarity=0.293 Sum_probs=24.9
Q ss_pred CCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHH
Q 006824 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTREL 310 (630)
Q Consensus 262 g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~L 310 (630)
++.+++.||+|+|||.+ +..+...+... +..++++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl--~~~l~~~~~~~------~~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTL--ARALARELGPP------GGGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHH--HHHHHhccCCC------CCCEEEECCEEcc
Confidence 56789999999999965 33333322211 1246777775443
No 230
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.11 E-value=0.097 Score=54.20 Aligned_cols=48 Identities=6% Similarity=0.183 Sum_probs=29.1
Q ss_pred cCceeEEEecchhhhhcCCc-HHHHHHHHhhc-CCCCcEEEEeecccHHH
Q 006824 370 MSRVTYLVLDEADRMFDLGF-EPQIRSIVGQI-RPDRQTLLFSATMPRKV 417 (630)
Q Consensus 370 l~~i~~lVvDEah~~~~~~~-~~~v~~i~~~l-~~~~q~l~~SAT~~~~~ 417 (630)
+.++++||||+.+......| ...+..+++.. ....++|+.|...+.++
T Consensus 244 l~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el 293 (329)
T PRK06835 244 LINCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEEL 293 (329)
T ss_pred hccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHH
Confidence 45789999999987543322 23455555543 33456776666555554
No 231
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.10 E-value=0.11 Score=54.42 Aligned_cols=129 Identities=21% Similarity=0.310 Sum_probs=69.5
Q ss_pred CCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEE-c-ccH-HHHHHHHHHHHHHhhhcCceEEEEECCCChH
Q 006824 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC-A-PTR-ELAHQIYLETKKFAKSHGIRVSAVYGGMSKL 339 (630)
Q Consensus 263 ~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil-~-Ptr-~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~ 339 (630)
+.++++||||+|||......+ ..+.. .+.++.++ + |.| ..+.| +..++...++.+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA-~~L~~-------~GkkVglI~aDt~RiaAvEQ----Lk~yae~lgipv---------- 299 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMA-WQFHG-------KKKTVGFITTDHSRIGTVQQ----LQDYVKTIGFEV---------- 299 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHH-HHHHH-------cCCcEEEEecCCcchHHHHH----HHHHhhhcCCcE----------
Confidence 578999999999997533322 23322 24445444 4 233 23333 334433323322
Q ss_pred HHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcC-CcHHHHHHHHhhcCCCCcEEEEeeccc-HHH
Q 006824 340 DQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDL-GFEPQIRSIVGQIRPDRQTLLFSATMP-RKV 417 (630)
Q Consensus 340 ~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~-~~~~~v~~i~~~l~~~~q~l~~SAT~~-~~~ 417 (630)
+++.+|..+.+.+..-. ...++++|+||-+=+.... .....+..++....+..-++.+|||.. ..+
T Consensus 300 -----------~v~~d~~~L~~aL~~lk-~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~ 367 (436)
T PRK11889 300 -----------IAVRDEAAMTRALTYFK-EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDM 367 (436)
T ss_pred -----------EecCCHHHHHHHHHHHH-hccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHH
Confidence 12346666666554211 1125789999988764322 123344555555556656677998765 455
Q ss_pred HHHHHHHc
Q 006824 418 EKLAREIL 425 (630)
Q Consensus 418 ~~l~~~~~ 425 (630)
...+..|-
T Consensus 368 ~~i~~~F~ 375 (436)
T PRK11889 368 IEIITNFK 375 (436)
T ss_pred HHHHHHhc
Confidence 66666653
No 232
>PRK06893 DNA replication initiation factor; Validated
Probab=96.06 E-value=0.015 Score=57.15 Aligned_cols=47 Identities=19% Similarity=0.324 Sum_probs=30.3
Q ss_pred cCceeEEEecchhhhhcC-CcHHHHHHHHhhcCC-CCcEEEEeecccHH
Q 006824 370 MSRVTYLVLDEADRMFDL-GFEPQIRSIVGQIRP-DRQTLLFSATMPRK 416 (630)
Q Consensus 370 l~~i~~lVvDEah~~~~~-~~~~~v~~i~~~l~~-~~q~l~~SAT~~~~ 416 (630)
+.+.++|||||+|.+... .+...+..+++.+.. ..+++++|++.++.
T Consensus 89 ~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 89 LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH 137 (229)
T ss_pred cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence 346789999999987533 234456666665543 34566777776544
No 233
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=96.05 E-value=0.039 Score=63.88 Aligned_cols=71 Identities=17% Similarity=0.170 Sum_probs=53.3
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHh
Q 006824 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (630)
Q Consensus 246 ~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 322 (630)
..|+|-|.+++.. ....+++.|..|||||.+ +..-+.+++.... -....+|+|+-|+..|..+.+.+.++.
T Consensus 8 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~v-l~~Ria~Li~~~~---v~p~~IL~lTFT~kAA~Em~~Rl~~~~ 78 (721)
T PRK11773 8 DSLNDKQREAVAA--PLGNMLVLAGAGSGKTRV-LVHRIAWLMQVEN---ASPYSIMAVTFTNKAAAEMRHRIEQLL 78 (721)
T ss_pred HhcCHHHHHHHhC--CCCCEEEEecCCCCHHHH-HHHHHHHHHHcCC---CChhHeEeeeccHHHHHHHHHHHHHHh
Confidence 4589999999864 346899999999999986 4444455554211 123459999999999999988888875
No 234
>PRK08727 hypothetical protein; Validated
Probab=95.94 E-value=0.029 Score=55.28 Aligned_cols=48 Identities=15% Similarity=0.166 Sum_probs=27.0
Q ss_pred cCceeEEEecchhhhhcCC-cHHHHHHHHhhcCC-CCcEEEEeecccHHH
Q 006824 370 MSRVTYLVLDEADRMFDLG-FEPQIRSIVGQIRP-DRQTLLFSATMPRKV 417 (630)
Q Consensus 370 l~~i~~lVvDEah~~~~~~-~~~~v~~i~~~l~~-~~q~l~~SAT~~~~~ 417 (630)
+.++++|||||+|.+.... ....+..+++.+.. ..++|+.|...|...
T Consensus 91 l~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l 140 (233)
T PRK08727 91 LEGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGL 140 (233)
T ss_pred HhcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhh
Confidence 3456789999999876433 22334445554432 334555555555443
No 235
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.91 E-value=0.05 Score=59.02 Aligned_cols=110 Identities=14% Similarity=0.127 Sum_probs=59.4
Q ss_pred CCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHH
Q 006824 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQF 342 (630)
Q Consensus 263 ~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 342 (630)
..+++.|++|+|||. ++.++.+.+.. ...+.+++++.+ .++...+...+....
T Consensus 142 npl~i~G~~G~GKTH--Ll~Ai~~~l~~----~~~~~~v~yv~~-~~f~~~~~~~l~~~~-------------------- 194 (450)
T PRK14087 142 NPLFIYGESGMGKTH--LLKAAKNYIES----NFSDLKVSYMSG-DEFARKAVDILQKTH-------------------- 194 (450)
T ss_pred CceEEECCCCCcHHH--HHHHHHHHHHH----hCCCCeEEEEEH-HHHHHHHHHHHHHhh--------------------
Confidence 568999999999994 44444443221 112455666544 556655544432210
Q ss_pred HHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcC-CcHHHHHHHHhhcC-CCCcEEEEeecccHHH
Q 006824 343 KELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDL-GFEPQIRSIVGQIR-PDRQTLLFSATMPRKV 417 (630)
Q Consensus 343 ~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~-~~~~~v~~i~~~l~-~~~q~l~~SAT~~~~~ 417 (630)
+.+..+.. .+.++++|||||+|.+... .....+..+++.+. ...|+|+.|-..|..+
T Consensus 195 --------------~~~~~~~~----~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l 253 (450)
T PRK14087 195 --------------KEIEQFKN----EICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELL 253 (450)
T ss_pred --------------hHHHHHHH----HhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 01111111 2457889999999987532 22344555555543 3446666555555443
No 236
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=95.87 E-value=0.036 Score=55.18 Aligned_cols=47 Identities=15% Similarity=0.279 Sum_probs=35.1
Q ss_pred ccccCceeEEEecchhhhhcCCcHHHHHHHHhhcCCCCcEEEEeeccc
Q 006824 367 ALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMP 414 (630)
Q Consensus 367 ~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q~l~~SAT~~ 414 (630)
....+.+.++|+||||.|.... +..+...+........+++.+..+.
T Consensus 124 ~~~~~~fKiiIlDEcdsmtsda-q~aLrr~mE~~s~~trFiLIcnyls 170 (346)
T KOG0989|consen 124 GYPCPPFKIIILDECDSMTSDA-QAALRRTMEDFSRTTRFILICNYLS 170 (346)
T ss_pred CCCCCcceEEEEechhhhhHHH-HHHHHHHHhccccceEEEEEcCChh
Confidence 3456678999999999987554 5677777777766777777777653
No 237
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.85 E-value=0.045 Score=54.57 Aligned_cols=49 Identities=16% Similarity=0.299 Sum_probs=31.2
Q ss_pred HcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHH
Q 006824 260 LSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLE 317 (630)
Q Consensus 260 l~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~ 317 (630)
-++.++++.|++|+|||..++ ++.+.+. . .|.. ++++++.+|+.++...
T Consensus 103 ~~~~nl~l~G~~G~GKThLa~-Ai~~~l~-~------~g~s-v~f~~~~el~~~Lk~~ 151 (254)
T COG1484 103 ERGENLVLLGPPGVGKTHLAI-AIGNELL-K------AGIS-VLFITAPDLLSKLKAA 151 (254)
T ss_pred ccCCcEEEECCCCCcHHHHHH-HHHHHHH-H------cCCe-EEEEEHHHHHHHHHHH
Confidence 377899999999999995422 2233333 2 1444 4456777787766433
No 238
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=95.83 E-value=0.037 Score=59.31 Aligned_cols=145 Identities=12% Similarity=0.234 Sum_probs=83.7
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHH-HHHHHHHHHHHHhhhcCceEEEEECCCChHHHH
Q 006824 264 DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRE-LAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQF 342 (630)
Q Consensus 264 d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~-La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 342 (630)
-.++.+..|||||.+.++-++..++.. ..+.++|++-|+.. |..-+...+......+++....-...... .+
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~-----~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~--~i 75 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAIN-----KKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM--EI 75 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhc-----CCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc--EE
Confidence 468899999999988888787777664 12567899999886 66666677777666656542221111100 00
Q ss_pred HHHHc-CCcEEEeCh-HHHHHHHHccccccCceeEEEecchhhhhcCCcHHHHHHHHhhcCC--CCcEEEEeecccHHHH
Q 006824 343 KELKA-GCEIVIATP-GRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRP--DRQTLLFSATMPRKVE 418 (630)
Q Consensus 343 ~~l~~-~~dIiv~Tp-~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~--~~q~l~~SAT~~~~~~ 418 (630)
.+.. |..|++..- .....+ .....+.++.+|||..+... .+..++..++. ....+++|.+|+....
T Consensus 76 -~~~~~g~~i~f~g~~d~~~~i-----k~~~~~~~~~idEa~~~~~~----~~~~l~~rlr~~~~~~~i~~t~NP~~~~~ 145 (396)
T TIGR01547 76 -KILNTGKKFIFKGLNDKPNKL-----KSGAGIAIIWFEEASQLTFE----DIKELIPRLRETGGKKFIIFSSNPESPLH 145 (396)
T ss_pred -EecCCCeEEEeecccCChhHh-----hCcceeeeehhhhhhhcCHH----HHHHHHHHhhccCCccEEEEEcCcCCCcc
Confidence 1122 455666543 211111 12234689999999987432 44444444442 2224788888765433
Q ss_pred HHHHHHc
Q 006824 419 KLAREIL 425 (630)
Q Consensus 419 ~l~~~~~ 425 (630)
-+...+.
T Consensus 146 w~~~~f~ 152 (396)
T TIGR01547 146 WVKKRFI 152 (396)
T ss_pred HHHHHHH
Confidence 3444444
No 239
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.77 E-value=0.068 Score=48.80 Aligned_cols=45 Identities=20% Similarity=0.423 Sum_probs=26.7
Q ss_pred cCceeEEEecchhhhhcCC----------cHHHHHHHHhhcCCCCcEEEEeeccc
Q 006824 370 MSRVTYLVLDEADRMFDLG----------FEPQIRSIVGQIRPDRQTLLFSATMP 414 (630)
Q Consensus 370 l~~i~~lVvDEah~~~~~~----------~~~~v~~i~~~l~~~~q~l~~SAT~~ 414 (630)
.....++|+||++.+.... ....+..+...++....+++++...+
T Consensus 83 ~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~ 137 (165)
T cd01120 83 RGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVP 137 (165)
T ss_pred CCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecC
Confidence 3478899999999875432 12445555555554444455554443
No 240
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.73 E-value=0.043 Score=54.18 Aligned_cols=44 Identities=18% Similarity=0.289 Sum_probs=25.7
Q ss_pred ceeEEEecchhhhhcC-CcHHHHHHHHhhcCC-CCcEEEEeecccH
Q 006824 372 RVTYLVLDEADRMFDL-GFEPQIRSIVGQIRP-DRQTLLFSATMPR 415 (630)
Q Consensus 372 ~i~~lVvDEah~~~~~-~~~~~v~~i~~~l~~-~~q~l~~SAT~~~ 415 (630)
++++|||||+|.+... .+...+..+++.+.. ....+++|++.++
T Consensus 97 ~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p 142 (235)
T PRK08084 97 QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPP 142 (235)
T ss_pred hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCCh
Confidence 3578999999997533 345556666665532 2223445555443
No 241
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.71 E-value=0.016 Score=57.44 Aligned_cols=54 Identities=24% Similarity=0.305 Sum_probs=40.6
Q ss_pred CCCCCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcC
Q 006824 218 FDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQ 290 (630)
Q Consensus 218 ~~~p~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~ 290 (630)
..+|..+.+|+++++|+-+.+.+.. ...=+++.+|||||||.+ +..++.++..+
T Consensus 99 R~Ip~~i~~~e~LglP~i~~~~~~~------------------~~GLILVTGpTGSGKSTT-lAamId~iN~~ 152 (353)
T COG2805 99 RLIPSKIPTLEELGLPPIVRELAES------------------PRGLILVTGPTGSGKSTT-LAAMIDYINKH 152 (353)
T ss_pred eccCccCCCHHHcCCCHHHHHHHhC------------------CCceEEEeCCCCCcHHHH-HHHHHHHHhcc
Confidence 4568999999999999888774321 112378999999999975 77788887654
No 242
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=95.68 E-value=0.052 Score=62.40 Aligned_cols=70 Identities=17% Similarity=0.082 Sum_probs=52.0
Q ss_pred CcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhh
Q 006824 248 PTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (630)
Q Consensus 248 ~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~ 323 (630)
|+|-|.+++.. ...++++.|..|||||.+ ++.-+.+++.... ....++|+|+.|+..+.++...+.+...
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~-L~~ri~~ll~~~~---~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRV-ITNKIAYLIQNCG---YKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHH-HHHHHHHHHHhcC---CCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 78899998864 456899999999999986 4444555543211 1235689999999999999888877653
No 243
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.66 E-value=0.052 Score=53.10 Aligned_cols=42 Identities=12% Similarity=0.286 Sum_probs=24.6
Q ss_pred eeEEEecchhhhhcC-CcHHHHHHHHhhcCCCCcEEEEeeccc
Q 006824 373 VTYLVLDEADRMFDL-GFEPQIRSIVGQIRPDRQTLLFSATMP 414 (630)
Q Consensus 373 i~~lVvDEah~~~~~-~~~~~v~~i~~~l~~~~q~l~~SAT~~ 414 (630)
..+|||||+|.+... .+...+..++..+......+++|++.+
T Consensus 91 ~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~ 133 (226)
T TIGR03420 91 ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAA 133 (226)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCC
Confidence 468999999997543 234556666555432223455565543
No 244
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=95.65 E-value=0.0055 Score=57.01 Aligned_cols=124 Identities=20% Similarity=0.250 Sum_probs=53.5
Q ss_pred EEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHH
Q 006824 266 IGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKEL 345 (630)
Q Consensus 266 l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l 345 (630)
++.|+=|-|||.+.-+. +..+.. ....+++|.+|+.+-+..+.+.+.+-+...+++...... ........
T Consensus 1 VltA~RGRGKSa~lGl~-~a~l~~------~~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~---~~~~~~~~ 70 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLA-AAALIQ------KGKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKR---IGQIIKLR 70 (177)
T ss_dssp -EEE-TTSSHHHHHHHC-CCCSSS-----------EEEE-SS--S-HHHHHCC---------------------------
T ss_pred CccCCCCCCHHHHHHHH-HHHHHH------hcCceEEEecCCHHHHHHHHHHHHhhccccccccccccc---cccccccc
Confidence 57899999999753322 222221 122569999999998887776666655544443310000 00000011
Q ss_pred HcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCcHHHHHHHHhhcCCCCcEEEEeeccc
Q 006824 346 KAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMP 414 (630)
Q Consensus 346 ~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q~l~~SAT~~ 414 (630)
..+..|-+..|..+... ....+++|||||=.+- .+.+..++.+.+ .++||.|..
T Consensus 71 ~~~~~i~f~~Pd~l~~~-------~~~~DlliVDEAAaIp----~p~L~~ll~~~~----~vv~stTi~ 124 (177)
T PF05127_consen 71 FNKQRIEFVAPDELLAE-------KPQADLLIVDEAAAIP----LPLLKQLLRRFP----RVVFSTTIH 124 (177)
T ss_dssp --CCC--B--HHHHCCT-----------SCEEECTGGGS-----HHHHHHHHCCSS----EEEEEEEBS
T ss_pred cccceEEEECCHHHHhC-------cCCCCEEEEechhcCC----HHHHHHHHhhCC----EEEEEeecc
Confidence 12456777777655332 1245899999999865 566777765432 577888864
No 245
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.59 E-value=0.061 Score=50.77 Aligned_cols=48 Identities=17% Similarity=0.258 Sum_probs=30.3
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHH
Q 006824 265 IIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (630)
Q Consensus 265 ~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 321 (630)
+++.|++|+|||.. .+-++....+ +|.+++|+.. .+...++...+..+
T Consensus 2 ~li~G~~G~GKT~l-~~~~~~~~~~-------~g~~v~~~s~-e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTF-ALQFLYAGLA-------RGEPGLYVTL-EESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHH-HHHHHHHHHH-------CCCcEEEEEC-CCCHHHHHHHHHHc
Confidence 68999999999974 3333333322 3666888764 35555666555554
No 246
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.58 E-value=0.095 Score=56.33 Aligned_cols=47 Identities=15% Similarity=0.248 Sum_probs=26.5
Q ss_pred ceeEEEecchhhhhcCC-cHHHHHHHHhhc-CCCCcEEEEeecccHHHH
Q 006824 372 RVTYLVLDEADRMFDLG-FEPQIRSIVGQI-RPDRQTLLFSATMPRKVE 418 (630)
Q Consensus 372 ~i~~lVvDEah~~~~~~-~~~~v~~i~~~l-~~~~q~l~~SAT~~~~~~ 418 (630)
.+++|||||+|.+.... ....+..+++.+ ....++|+.|...|..+.
T Consensus 199 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~ 247 (405)
T TIGR00362 199 SVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELP 247 (405)
T ss_pred hCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHh
Confidence 46799999999876432 123344444443 334566554444444443
No 247
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.58 E-value=0.051 Score=53.31 Aligned_cols=43 Identities=16% Similarity=0.311 Sum_probs=26.4
Q ss_pred ceeEEEecchhhhhcCCcHHHHHHHHhhcCCCCc-EEEEeecccH
Q 006824 372 RVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ-TLLFSATMPR 415 (630)
Q Consensus 372 ~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q-~l~~SAT~~~ 415 (630)
..++|||||+|.+... ....+..+++.+..... +++++++.++
T Consensus 90 ~~~~liiDdi~~l~~~-~~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 90 EAELYAVDDVERLDDA-QQIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred cCCEEEEeChhhcCch-HHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 4678999999986433 23445555555443333 5777777554
No 248
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.45 E-value=0.11 Score=56.64 Aligned_cols=48 Identities=15% Similarity=0.242 Sum_probs=27.4
Q ss_pred CceeEEEecchhhhhcCC-cHHHHHHHHhhc-CCCCcEEEEeecccHHHH
Q 006824 371 SRVTYLVLDEADRMFDLG-FEPQIRSIVGQI-RPDRQTLLFSATMPRKVE 418 (630)
Q Consensus 371 ~~i~~lVvDEah~~~~~~-~~~~v~~i~~~l-~~~~q~l~~SAT~~~~~~ 418 (630)
.++++|||||+|.+.... ....+..+++.+ ....++++.|...|..+.
T Consensus 210 ~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~ 259 (450)
T PRK00149 210 RSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELP 259 (450)
T ss_pred hcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHH
Confidence 367799999999875432 123344444443 234566655555554543
No 249
>PRK11054 helD DNA helicase IV; Provisional
Probab=95.43 E-value=0.062 Score=61.28 Aligned_cols=72 Identities=15% Similarity=0.152 Sum_probs=52.9
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhh
Q 006824 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (630)
Q Consensus 246 ~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~ 323 (630)
..|++-|+.++-. ...++++.|..|||||.+ ++.-+.+++... ...+..+|+|+.|+..|..+.+.+.....
T Consensus 195 ~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~v-l~~r~ayLl~~~---~~~~~~IL~ltft~~AA~em~eRL~~~lg 266 (684)
T PRK11054 195 SPLNPSQARAVVN--GEDSLLVLAGAGSGKTSV-LVARAGWLLARG---QAQPEQILLLAFGRQAAEEMDERIRERLG 266 (684)
T ss_pred CCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHH-HHHHHHHHHHhC---CCCHHHeEEEeccHHHHHHHHHHHHHhcC
Confidence 5699999999853 345789999999999986 344444444321 11245799999999999999988877654
No 250
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=95.43 E-value=0.03 Score=64.09 Aligned_cols=71 Identities=18% Similarity=0.116 Sum_probs=52.7
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhh
Q 006824 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (630)
Q Consensus 247 ~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~ 323 (630)
.|++-|.+++.. ....+++.|..|||||.+ +..-+.+++.... -...++|+|+.|+..|..+.+.+.+...
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~v-L~~Ria~Li~~~~---v~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRV-ITNKIAHLIRGCG---YQARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHH-HHHHHHHHHHhcC---CCHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 478999999865 356789999999999987 4444555543211 1234699999999999999988887654
No 251
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.39 E-value=0.12 Score=55.83 Aligned_cols=50 Identities=10% Similarity=0.250 Sum_probs=30.7
Q ss_pred CceeEEEecchhhhhcCC-cHHHHHHHHhhcC-CCCcEEEEeecccHHHHHH
Q 006824 371 SRVTYLVLDEADRMFDLG-FEPQIRSIVGQIR-PDRQTLLFSATMPRKVEKL 420 (630)
Q Consensus 371 ~~i~~lVvDEah~~~~~~-~~~~v~~i~~~l~-~~~q~l~~SAT~~~~~~~l 420 (630)
.++++|+|||+|.+.... ....+..+++.+. ...|+|+.|.+.|..+..+
T Consensus 201 ~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l 252 (445)
T PRK12422 201 RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAM 252 (445)
T ss_pred ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhh
Confidence 467899999999976432 2334445555442 3566666665666665443
No 252
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.25 E-value=0.12 Score=57.52 Aligned_cols=49 Identities=14% Similarity=0.241 Sum_probs=31.2
Q ss_pred cCceeEEEecchhhhhcCC-cHHHHHHHHhhcCC-CCcEEEEeecccHHHH
Q 006824 370 MSRVTYLVLDEADRMFDLG-FEPQIRSIVGQIRP-DRQTLLFSATMPRKVE 418 (630)
Q Consensus 370 l~~i~~lVvDEah~~~~~~-~~~~v~~i~~~l~~-~~q~l~~SAT~~~~~~ 418 (630)
+.++++||||++|.+.... ....+..+++.+.. ..++|+.|-..|..+.
T Consensus 375 y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~ 425 (617)
T PRK14086 375 YREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLV 425 (617)
T ss_pred hhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhh
Confidence 3467899999999876433 23445556655543 5677776666665544
No 253
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.14 E-value=0.31 Score=49.18 Aligned_cols=132 Identities=20% Similarity=0.310 Sum_probs=64.2
Q ss_pred CCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEc-c-cHHHHHHHHHHHHHHhhhcCceEEEEECCCChHH
Q 006824 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICA-P-TRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (630)
Q Consensus 263 ~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~-P-tr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 340 (630)
+-+++++++|+|||.+..-.+ .++.. .+.+++++. - .|.-+. +.+..|....++.+.....+..
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA-~~l~~-------~g~~V~li~~D~~r~~a~---~ql~~~~~~~~i~~~~~~~~~d--- 138 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLA-NKLKK-------QGKSVLLAAGDTFRAAAI---EQLEEWAKRLGVDVIKQKEGAD--- 138 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHH-HHHHh-------cCCEEEEEeCCCCCHHHH---HHHHHHHHhCCeEEEeCCCCCC---
Confidence 457788999999997533333 22221 245566554 3 344332 2344454444544332211111
Q ss_pred HHHHHHcCCcEEEeChHHH-HHHHHccccccCceeEEEecchhhhhc-CCcHHHHHHHHhhcC------CCCcEEEEeec
Q 006824 341 QFKELKAGCEIVIATPGRL-IDMLKMKALTMSRVTYLVLDEADRMFD-LGFEPQIRSIVGQIR------PDRQTLLFSAT 412 (630)
Q Consensus 341 ~~~~l~~~~dIiv~Tp~~L-~~~l~~~~~~l~~i~~lVvDEah~~~~-~~~~~~v~~i~~~l~------~~~q~l~~SAT 412 (630)
|..+ ...+.. .....+++||||=+-++.. ......+..+...+. ++.-++.++||
T Consensus 139 ---------------p~~~~~~~l~~--~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~ 201 (272)
T TIGR00064 139 ---------------PAAVAFDAIQK--AKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDAT 201 (272)
T ss_pred ---------------HHHHHHHHHHH--HHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECC
Confidence 1111 111110 1124567777777665431 112334444544444 56667888888
Q ss_pred ccHHHHHHHHHHc
Q 006824 413 MPRKVEKLAREIL 425 (630)
Q Consensus 413 ~~~~~~~l~~~~~ 425 (630)
........+..+.
T Consensus 202 ~~~~~~~~~~~f~ 214 (272)
T TIGR00064 202 TGQNALEQAKVFN 214 (272)
T ss_pred CCHHHHHHHHHHH
Confidence 7655444444443
No 254
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=95.14 E-value=0.11 Score=60.32 Aligned_cols=110 Identities=16% Similarity=0.164 Sum_probs=70.5
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhc
Q 006824 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (630)
Q Consensus 246 ~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~ 325 (630)
..|+|-|.+++.+ ....+++.|..|||||.+ ++.-+.+++..... ...++|+|+-|+..|..+.+.+.+++..
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~-l~~ria~Li~~~~i---~P~~IL~lTFT~kAA~em~~Rl~~~~~~- 75 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRV-LTHRIAHLIAEKNV---APWNILAITFTNKAAREMKERVEKLLGP- 75 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHH-HHHHHHHHHHcCCC---CHHHeeeeeccHHHHHHHHHHHHHHhcc-
Confidence 4589999999975 356899999999999986 44444555443211 1235899999999999988888776431
Q ss_pred CceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHcc-cccc-CceeEEEecchhh
Q 006824 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK-ALTM-SRVTYLVLDEADR 383 (630)
Q Consensus 326 ~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~-~~~l-~~i~~lVvDEah~ 383 (630)
....+.|+|..+|...+-+. ...+ -.-.+-|+|+.+.
T Consensus 76 ---------------------~~~~~~i~TFHs~~~~iLr~~~~~~g~~~~f~i~d~~~~ 114 (726)
T TIGR01073 76 ---------------------VAEDIWISTFHSMCVRILRRDIDRIGINRNFSIIDPTDQ 114 (726)
T ss_pred ---------------------ccCCcEEEcHHHHHHHHHHHHHHHhCCCCCCCcCCHHHH
Confidence 01346788887776433221 1111 0123456777663
No 255
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.12 E-value=0.16 Score=62.31 Aligned_cols=63 Identities=32% Similarity=0.314 Sum_probs=45.7
Q ss_pred CCCcHHHHHHHHHHHcC--CCEEEEeCCCChHHHHH--HHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHH
Q 006824 246 EKPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAF--VLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQI 314 (630)
Q Consensus 246 ~~~~~~Q~~~i~~il~g--~d~l~~a~TGsGKT~~~--~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~ 314 (630)
..|++-|.+++..++.. +-+++.|..|+|||.+. ++-++..+. ...+..++.++||-..+..+
T Consensus 834 ~~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~------e~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 834 EKLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLP------ESERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred cccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHh------hccCceEEEEechHHHHHHH
Confidence 36999999999999965 77899999999999642 122222221 12366789999998777655
No 256
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.06 E-value=0.41 Score=52.23 Aligned_cols=129 Identities=16% Similarity=0.203 Sum_probs=61.7
Q ss_pred cCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEE-cc-cHHHHHHHHHHHHHHhhhcCceEEEEECCCCh
Q 006824 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC-AP-TRELAHQIYLETKKFAKSHGIRVSAVYGGMSK 338 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil-~P-tr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~ 338 (630)
.|+.+.++|+||+|||......+...... ..+.++.++ +. .|..+. +.+..+....++.+..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~------~~gkkVaLIdtDtyRigA~---EQLk~ya~iLgv~v~~------- 412 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQ------HAPRDVALVTTDTQRVGGR---EQLHSYGRQLGIAVHE------- 412 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh------cCCCceEEEecccccccHH---HHHHHhhcccCceeEe-------
Confidence 56788999999999996533222222111 112234433 32 343332 2233333323332211
Q ss_pred HHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcC-CcHHHHHHHHhhcCCCCcEEEEeecccH-H
Q 006824 339 LDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDL-GFEPQIRSIVGQIRPDRQTLLFSATMPR-K 416 (630)
Q Consensus 339 ~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~-~~~~~v~~i~~~l~~~~q~l~~SAT~~~-~ 416 (630)
+.++..+...+. .+.++++||||.+=+.... .....+..+. .......+++++++... .
T Consensus 413 --------------a~d~~~L~~aL~----~l~~~DLVLIDTaG~s~~D~~l~eeL~~L~-aa~~~a~lLVLpAtss~~D 473 (559)
T PRK12727 413 --------------ADSAESLLDLLE----RLRDYKLVLIDTAGMGQRDRALAAQLNWLR-AARQVTSLLVLPANAHFSD 473 (559)
T ss_pred --------------cCcHHHHHHHHH----HhccCCEEEecCCCcchhhHHHHHHHHHHH-HhhcCCcEEEEECCCChhH
Confidence 123344445444 2346889999988753211 1112222222 22334567778887653 4
Q ss_pred HHHHHHHH
Q 006824 417 VEKLAREI 424 (630)
Q Consensus 417 ~~~l~~~~ 424 (630)
+..+++.|
T Consensus 474 l~eii~~f 481 (559)
T PRK12727 474 LDEVVRRF 481 (559)
T ss_pred HHHHHHHH
Confidence 44455544
No 257
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=95.06 E-value=0.067 Score=61.41 Aligned_cols=98 Identities=17% Similarity=0.209 Sum_probs=74.0
Q ss_pred EEEcCCccccHHHHH-HhccCCCCCCCEEEEccchhhHHHHHHHHHh----CCCcEEEEeCCCCHHHHHHHHHHhhcCCc
Q 006824 447 VHVIPSDAEKLPWLL-EKLPGMIDDGDVLVFASKKTTVDEIESQLAQ----KGFKAAALHGDKDQASRMEILQKFKSGVY 521 (630)
Q Consensus 447 ~~~~~~~~~k~~~l~-~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~----~~~~~~~ihg~~~~~~r~~~~~~F~~g~~ 521 (630)
...-+..+.|..... ..+.....+.+++|.+|+..-+...+..|.. .++.+..+||+++..+|..++..+.+|..
T Consensus 286 Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~ 365 (681)
T PRK10917 286 LLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEA 365 (681)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCC
Confidence 333445556654332 2222223455899999999988877776654 47899999999999999999999999999
Q ss_pred eEEEEcC-CcccCCCCCCccEEEE
Q 006824 522 HVLIATD-VAARGLDIKSIKSVVN 544 (630)
Q Consensus 522 ~VLvaT~-~~~~Gldi~~v~~VI~ 544 (630)
.|+|+|. .+...+.++.+.+||.
T Consensus 366 ~IvVgT~~ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 366 DIVIGTHALIQDDVEFHNLGLVII 389 (681)
T ss_pred CEEEchHHHhcccchhcccceEEE
Confidence 9999995 4556778888888885
No 258
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.04 E-value=0.23 Score=61.84 Aligned_cols=65 Identities=28% Similarity=0.284 Sum_probs=46.1
Q ss_pred CCCcHHHHHHHHHHHcC--CCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHH
Q 006824 246 EKPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQI 314 (630)
Q Consensus 246 ~~~~~~Q~~~i~~il~g--~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~ 314 (630)
..|++.|.+|+..++.+ +-+++.+..|+|||.+ +-.+..++.. +....+..++.++||-..+..+
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~--l~~v~~~~~~--l~~~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQ--FRAVMSAVNT--LPESERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHH--HHHHHHHHHH--hhcccCceEEEECCcHHHHHHH
Confidence 46899999999999975 5789999999999954 3333222221 0112356789999998777654
No 259
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.04 E-value=0.15 Score=52.88 Aligned_cols=42 Identities=12% Similarity=0.009 Sum_probs=29.8
Q ss_pred CCcHHHHHHHHHHHcCC----CEEEEeCCCChHHHHHHHHHHHHHhc
Q 006824 247 KPTSIQCQALPIILSGR----DIIGIAKTGSGKTAAFVLPMIVHIMD 289 (630)
Q Consensus 247 ~~~~~Q~~~i~~il~g~----d~l~~a~TGsGKT~~~~l~~l~~~~~ 289 (630)
.++|+|...|..++... -.++.||.|.|||..+ ..+...++.
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A-~~~A~~llC 48 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALA-ERLAAALLC 48 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHH-HHHHHHHcC
Confidence 35789999998877542 4789999999999653 334444443
No 260
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.01 E-value=0.29 Score=52.68 Aligned_cols=52 Identities=19% Similarity=0.389 Sum_probs=33.3
Q ss_pred eeEEEecchhhhh-cCCcHHHHHHHHhhcCCCCcEEEEeecccHHHHHHHHHH
Q 006824 373 VTYLVLDEADRMF-DLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREI 424 (630)
Q Consensus 373 i~~lVvDEah~~~-~~~~~~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~~~ 424 (630)
.++||||.+-+.. +......+..+...+.++.-++.++|+........+..|
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~F 228 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAF 228 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHHH
Confidence 4789999995532 122334455666666777778888888876555555554
No 261
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=95.00 E-value=0.18 Score=61.81 Aligned_cols=124 Identities=19% Similarity=0.136 Sum_probs=79.0
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcC
Q 006824 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (630)
Q Consensus 247 ~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~ 326 (630)
++|+-|.++|. ..++++++.|..|||||.+.+--++..+... .+-.++|+|+=|+..|..+.+.+.+.....-
T Consensus 1 ~~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~-----~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~ 73 (1232)
T TIGR02785 1 QWTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRG-----VDIDRLLVVTFTNAAAREMKERIEEALQKAL 73 (1232)
T ss_pred CCCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC-----CCHhhEEEEeccHHHHHHHHHHHHHHHHHHH
Confidence 36889999997 4688999999999999987666666665432 1123589999999999999888877654311
Q ss_pred ceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCce--eEEEecchhh
Q 006824 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRV--TYLVLDEADR 383 (630)
Q Consensus 327 ~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i--~~lVvDEah~ 383 (630)
-. ........+.+..-...-|+|...+...+-+.....-.+ .+=|.||...
T Consensus 74 ~~------~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 74 QQ------EPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred hc------CchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 00 001111112222224567899988875554433222222 4556888875
No 262
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.98 E-value=0.18 Score=57.52 Aligned_cols=130 Identities=15% Similarity=0.187 Sum_probs=62.9
Q ss_pred CCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEE-cccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHH
Q 006824 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC-APTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (630)
Q Consensus 262 g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil-~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 340 (630)
++-+.++||||+|||.+....+....... .+.++.++ +-|--.+ ..+.++.++...++.+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~------G~kkV~lit~Dt~Rig--A~eQL~~~a~~~gvpv~---------- 246 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVARE------GADQLALLTTDSFRIG--ALEQLRIYGRILGVPVH---------- 246 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHc------CCCeEEEecCcccchH--HHHHHHHHHHhCCCCcc----------
Confidence 45678999999999976433332221111 11234443 3332111 12344555554454332
Q ss_pred HHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcC-CcHHHHHHHHhhcCCCCcEEEEeecccH-HHH
Q 006824 341 QFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDL-GFEPQIRSIVGQIRPDRQTLLFSATMPR-KVE 418 (630)
Q Consensus 341 ~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~-~~~~~v~~i~~~l~~~~q~l~~SAT~~~-~~~ 418 (630)
++.+|..+...+. .+...++|+||=+=+.... .....+..+.....+...++.+|||... .+.
T Consensus 247 -----------~~~~~~~l~~al~----~~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~ 311 (767)
T PRK14723 247 -----------AVKDAADLRFALA----ALGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLN 311 (767)
T ss_pred -----------ccCCHHHHHHHHH----HhcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHH
Confidence 2235555555444 2334567777766553211 1222333333344455667777777643 344
Q ss_pred HHHHHH
Q 006824 419 KLAREI 424 (630)
Q Consensus 419 ~l~~~~ 424 (630)
+++..|
T Consensus 312 ~i~~~f 317 (767)
T PRK14723 312 EVVHAY 317 (767)
T ss_pred HHHHHH
Confidence 455554
No 263
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.98 E-value=0.41 Score=48.04 Aligned_cols=131 Identities=19% Similarity=0.258 Sum_probs=71.5
Q ss_pred cCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEE-cccH--HHHHHHHHHHHHHhhhcCceEEEEECCCC
Q 006824 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC-APTR--ELAHQIYLETKKFAKSHGIRVSAVYGGMS 337 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil-~Ptr--~La~Q~~~~~~~~~~~~~~~~~~~~gg~~ 337 (630)
.+..+++++++|+|||..+...+.. +.. .+.++.++ +.+. ..+.||. .++...++.+.
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~-l~~-------~~~~v~~i~~D~~ri~~~~ql~----~~~~~~~~~~~------- 134 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQ-FHG-------KKKTVGFITTDHSRIGTVQQLQ----DYVKTIGFEVI------- 134 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHH-HHH-------cCCeEEEEecCCCCHHHHHHHH----HHhhhcCceEE-------
Confidence 4578899999999999754433322 211 13334444 3232 3444443 33332233322
Q ss_pred hHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhc-CCcHHHHHHHHhhcCCCCcEEEEeeccc-H
Q 006824 338 KLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFD-LGFEPQIRSIVGQIRPDRQTLLFSATMP-R 415 (630)
Q Consensus 338 ~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~-~~~~~~v~~i~~~l~~~~q~l~~SAT~~-~ 415 (630)
...+|..+...+..- .....++++|||-+=+... ......+..++....+..-++.+|||.. .
T Consensus 135 --------------~~~~~~~l~~~l~~l-~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~ 199 (270)
T PRK06731 135 --------------AVRDEAAMTRALTYF-KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK 199 (270)
T ss_pred --------------ecCCHHHHHHHHHHH-HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHH
Confidence 113455555444321 1124688999999876431 1223445555566666656778999864 4
Q ss_pred HHHHHHHHHc
Q 006824 416 KVEKLAREIL 425 (630)
Q Consensus 416 ~~~~l~~~~~ 425 (630)
.+...++.|-
T Consensus 200 d~~~~~~~f~ 209 (270)
T PRK06731 200 DMIEIITNFK 209 (270)
T ss_pred HHHHHHHHhC
Confidence 6666777663
No 264
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=94.95 E-value=0.04 Score=60.96 Aligned_cols=82 Identities=27% Similarity=0.460 Sum_probs=64.4
Q ss_pred HHHhhcCCceEEEEcCCcccCCCCCCccEEEE--------eCCCCCHHHHHHHhhhcccCCCCCeEEEEEecc---ccHH
Q 006824 513 LQKFKSGVYHVLIATDVAARGLDIKSIKSVVN--------FDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ---KEAR 581 (630)
Q Consensus 513 ~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI~--------~~~p~~~~~y~QriGR~gR~g~~~g~~~~l~~~---~d~~ 581 (630)
-++|+.|+..|-|-..+++.||.+..-+.|+| ..+|||.+.-+|..||++|.++-.+--|+|+-. .+.+
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGErR 929 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGERR 929 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccchH
Confidence 45799999999999999999999987766664 789999999999999999998555555555543 3566
Q ss_pred HHHHHHHHHHHcC
Q 006824 582 FAGELVNSLIAAG 594 (630)
Q Consensus 582 ~~~~l~~~l~~~~ 594 (630)
++.-+.+.|+..|
T Consensus 930 FAS~VAKRLESLG 942 (1300)
T KOG1513|consen 930 FASIVAKRLESLG 942 (1300)
T ss_pred HHHHHHHHHHhhc
Confidence 7776666676543
No 265
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=94.90 E-value=0.13 Score=54.18 Aligned_cols=47 Identities=13% Similarity=0.229 Sum_probs=33.7
Q ss_pred ceeEEEecchhhhhcC-CcHHHHHHHHhhcCC-CCcEEEEeecccHHHH
Q 006824 372 RVTYLVLDEADRMFDL-GFEPQIRSIVGQIRP-DRQTLLFSATMPRKVE 418 (630)
Q Consensus 372 ~i~~lVvDEah~~~~~-~~~~~v~~i~~~l~~-~~q~l~~SAT~~~~~~ 418 (630)
++++++||.++.+... .....+..+++.+.. ..|+|+.|..+|.++.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~ 223 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELN 223 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhc
Confidence 7889999999997755 345556666666654 3477777777777755
No 266
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.88 E-value=0.1 Score=50.93 Aligned_cols=48 Identities=13% Similarity=0.268 Sum_probs=30.9
Q ss_pred cCceeEEEecchhhhhcCC-cHHHHHHHHhhcC-CCCcEEEEeecccHHH
Q 006824 370 MSRVTYLVLDEADRMFDLG-FEPQIRSIVGQIR-PDRQTLLFSATMPRKV 417 (630)
Q Consensus 370 l~~i~~lVvDEah~~~~~~-~~~~v~~i~~~l~-~~~q~l~~SAT~~~~~ 417 (630)
+..+++|+||.+|.+.... +...+..+++.+. ...++|+.|...|..+
T Consensus 95 ~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 95 LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 4578999999999976532 3445556666553 3556666666666543
No 267
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.71 E-value=0.21 Score=51.24 Aligned_cols=50 Identities=14% Similarity=0.151 Sum_probs=29.5
Q ss_pred cCceeEEEecchhhhhcCCcH--HHHHHHHh-hcCCCCcEEEEeecccHHHHH
Q 006824 370 MSRVTYLVLDEADRMFDLGFE--PQIRSIVG-QIRPDRQTLLFSATMPRKVEK 419 (630)
Q Consensus 370 l~~i~~lVvDEah~~~~~~~~--~~v~~i~~-~l~~~~q~l~~SAT~~~~~~~ 419 (630)
+.++++|||||...-....|. ..+..|+. .+.....|++.|-..+.++..
T Consensus 215 l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~~el~~ 267 (306)
T PRK08939 215 VKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFDFDELEH 267 (306)
T ss_pred hcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCCHHHHHH
Confidence 458899999999753322222 23344544 234566777777766555443
No 268
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=94.65 E-value=0.78 Score=51.29 Aligned_cols=61 Identities=10% Similarity=0.063 Sum_probs=44.6
Q ss_pred HHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcC
Q 006824 259 ILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (630)
Q Consensus 259 il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~ 326 (630)
.+..+-.++.+|=|.|||.+..+.+ .++... .+.+++|.+|...-+.++...+.+++...+
T Consensus 184 ~fkq~~tV~taPRqrGKS~iVgi~l-~~La~f------~Gi~IlvTAH~~~ts~evF~rv~~~le~lg 244 (752)
T PHA03333 184 EYGKCYTAATVPRRCGKTTIMAIIL-AAMISF------LEIDIVVQAQRKTMCLTLYNRVETVVHAYQ 244 (752)
T ss_pred HHhhcceEEEeccCCCcHHHHHHHH-HHHHHh------cCCeEEEECCChhhHHHHHHHHHHHHHHhc
Confidence 3456778999999999997644333 333221 256799999999999999999888887443
No 269
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=94.63 E-value=0.42 Score=49.22 Aligned_cols=43 Identities=23% Similarity=0.342 Sum_probs=31.1
Q ss_pred CCCcHHHHHHHHHHH----cCC---CEEEEeCCCChHHHHHHHHHHHHHhc
Q 006824 246 EKPTSIQCQALPIIL----SGR---DIIGIAKTGSGKTAAFVLPMIVHIMD 289 (630)
Q Consensus 246 ~~~~~~Q~~~i~~il----~g~---d~l~~a~TGsGKT~~~~l~~l~~~~~ 289 (630)
..++|+|..++..+. +|+ -+++.||.|.||+.. ...+...++.
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~l-A~~lA~~LlC 52 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAV-ALALAEHVLA 52 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHH-HHHHHHHHhC
Confidence 568899999987765 443 489999999999964 3444455544
No 270
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.61 E-value=0.13 Score=51.72 Aligned_cols=53 Identities=17% Similarity=0.264 Sum_probs=32.6
Q ss_pred CCEEEEeCCCChHHHHHHHHHHHHHhcC-Cc---ccccCCCeEEEEcccHHHHHHHHHHHHH
Q 006824 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQ-PE---LQKEEGPIGVICAPTRELAHQIYLETKK 320 (630)
Q Consensus 263 ~d~l~~a~TGsGKT~~~~l~~l~~~~~~-~~---~~~~~~~~vLil~Ptr~La~Q~~~~~~~ 320 (630)
.+++++|+||.|||.+ +.+.... +. .....-|.++|-+|...-....+..+-.
T Consensus 62 p~lLivG~snnGKT~I-----i~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~ 118 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMI-----IERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILE 118 (302)
T ss_pred CceEEecCCCCcHHHH-----HHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHH
Confidence 5899999999999974 2222211 11 1112247778888877666666655443
No 271
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=94.60 E-value=0.36 Score=45.28 Aligned_cols=105 Identities=16% Similarity=0.109 Sum_probs=61.9
Q ss_pred CCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHH
Q 006824 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQF 342 (630)
Q Consensus 263 ~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 342 (630)
.=.++.+||+||||...+--+-++. -.|.++++..|-..- .++...+....|.+.
T Consensus 5 ~l~~i~gpM~SGKT~eLl~r~~~~~--------~~g~~v~vfkp~iD~-------------R~~~~~V~Sr~G~~~---- 59 (201)
T COG1435 5 WLEFIYGPMFSGKTEELLRRARRYK--------EAGMKVLVFKPAIDT-------------RYGVGKVSSRIGLSS---- 59 (201)
T ss_pred EEEEEEccCcCcchHHHHHHHHHHH--------HcCCeEEEEeccccc-------------ccccceeeeccCCcc----
Confidence 3458899999999986333333332 236678898884211 113333333444333
Q ss_pred HHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCcHHHHHHHHhhc
Q 006824 343 KELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI 400 (630)
Q Consensus 343 ~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l 400 (630)
.-++|-++..+.+.+....... .+++|.||||+-+. .....++..+...+
T Consensus 60 ------~A~~i~~~~~i~~~i~~~~~~~-~~~~v~IDEaQF~~-~~~v~~l~~lad~l 109 (201)
T COG1435 60 ------EAVVIPSDTDIFDEIAALHEKP-PVDCVLIDEAQFFD-EELVYVLNELADRL 109 (201)
T ss_pred ------cceecCChHHHHHHHHhcccCC-CcCEEEEehhHhCC-HHHHHHHHHHHhhc
Confidence 3467777778888776543322 28899999999743 22344555555543
No 272
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=94.59 E-value=0.34 Score=54.82 Aligned_cols=144 Identities=19% Similarity=0.263 Sum_probs=85.8
Q ss_pred CCCCCcHHHHHHHHHHHcCC--CEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHH
Q 006824 244 GYEKPTSIQCQALPIILSGR--DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (630)
Q Consensus 244 ~~~~~~~~Q~~~i~~il~g~--d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 321 (630)
..+....-|.+.+..++..+ -+++.|.=|-|||.+.-+.+ ..+.... ..-.++|.+|+.+-+..+...+.+-
T Consensus 211 ~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~-~~~~~~~-----~~~~iiVTAP~~~nv~~Lf~fa~~~ 284 (758)
T COG1444 211 CLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIAL-AAAARLA-----GSVRIIVTAPTPANVQTLFEFAGKG 284 (758)
T ss_pred hcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHH-HHHHHhc-----CCceEEEeCCCHHHHHHHHHHHHHh
Confidence 33455555555666666553 58999999999997655444 2221110 0346899999999998888777777
Q ss_pred hhhcCceEEEEECCCChHHHHHHHH-cCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCcHHHHHHHHhhc
Q 006824 322 AKSHGIRVSAVYGGMSKLDQFKELK-AGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI 400 (630)
Q Consensus 322 ~~~~~~~~~~~~gg~~~~~~~~~l~-~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l 400 (630)
+...|++-.+........ .... ....|=+-+|.... ..-+++|||||=.|- .+.+..++...
T Consensus 285 l~~lg~~~~v~~d~~g~~---~~~~~~~~~i~y~~P~~a~----------~~~DllvVDEAAaIp----lplL~~l~~~~ 347 (758)
T COG1444 285 LEFLGYKRKVAPDALGEI---REVSGDGFRIEYVPPDDAQ----------EEADLLVVDEAAAIP----LPLLHKLLRRF 347 (758)
T ss_pred HHHhCCccccccccccce---eeecCCceeEEeeCcchhc----------ccCCEEEEehhhcCC----hHHHHHHHhhc
Confidence 766665433222111000 0000 11224444443221 127789999998864 56677776654
Q ss_pred CCCCcEEEEeeccc
Q 006824 401 RPDRQTLLFSATMP 414 (630)
Q Consensus 401 ~~~~q~l~~SAT~~ 414 (630)
+.++||.|+.
T Consensus 348 ----~rv~~sTTIh 357 (758)
T COG1444 348 ----PRVLFSTTIH 357 (758)
T ss_pred ----CceEEEeeec
Confidence 3588999974
No 273
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=94.57 E-value=0.16 Score=52.70 Aligned_cols=37 Identities=30% Similarity=0.430 Sum_probs=23.5
Q ss_pred ceeEEEecchhhhhcCCcHHHHHHHHhhcCCCCcEEEEeecc
Q 006824 372 RVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATM 413 (630)
Q Consensus 372 ~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q~l~~SAT~ 413 (630)
+=.+++|||+||+- ..+...++.++. +..++++-||-
T Consensus 104 r~tiLflDEIHRfn----K~QQD~lLp~vE-~G~iilIGATT 140 (436)
T COG2256 104 RRTILFLDEIHRFN----KAQQDALLPHVE-NGTIILIGATT 140 (436)
T ss_pred CceEEEEehhhhcC----hhhhhhhhhhhc-CCeEEEEeccC
Confidence 44678999999953 334445555553 44567777774
No 274
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=94.57 E-value=0.33 Score=48.69 Aligned_cols=16 Identities=31% Similarity=0.416 Sum_probs=14.2
Q ss_pred CCEEEEeCCCChHHHH
Q 006824 263 RDIIGIAKTGSGKTAA 278 (630)
Q Consensus 263 ~d~l~~a~TGsGKT~~ 278 (630)
.++++.||+|+|||.+
T Consensus 43 ~~vll~GppGtGKTtl 58 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTV 58 (261)
T ss_pred ceEEEEcCCCCCHHHH
Confidence 5789999999999965
No 275
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=94.55 E-value=0.47 Score=54.43 Aligned_cols=41 Identities=15% Similarity=0.282 Sum_probs=22.9
Q ss_pred CceeEEEecchhhhhcCCcHHHHHHHHhhc-CCCCcEEEEeec
Q 006824 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQI-RPDRQTLLFSAT 412 (630)
Q Consensus 371 ~~i~~lVvDEah~~~~~~~~~~v~~i~~~l-~~~~q~l~~SAT 412 (630)
..+.+|||||+|.+...+ ...+..+++.. ....+++++..+
T Consensus 868 r~v~IIILDEID~L~kK~-QDVLYnLFR~~~~s~SKLiLIGIS 909 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITKT-QKVLFTLFDWPTKINSKLVLIAIS 909 (1164)
T ss_pred ccceEEEeehHhhhCccH-HHHHHHHHHHhhccCCeEEEEEec
Confidence 356789999999987532 33344444422 123444444443
No 276
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.54 E-value=0.19 Score=54.47 Aligned_cols=21 Identities=29% Similarity=0.289 Sum_probs=16.3
Q ss_pred cCCCEEEEeCCCChHHHHHHH
Q 006824 261 SGRDIIGIAKTGSGKTAAFVL 281 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~~~l 281 (630)
.|+-++++||||+|||.+...
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaK 275 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAK 275 (484)
T ss_pred CCcEEEEECCCCccHHHHHHH
Confidence 355688999999999976443
No 277
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=94.52 E-value=0.087 Score=46.30 Aligned_cols=17 Identities=29% Similarity=0.559 Sum_probs=13.6
Q ss_pred ceeEEEecchhhhhcCC
Q 006824 372 RVTYLVLDEADRMFDLG 388 (630)
Q Consensus 372 ~i~~lVvDEah~~~~~~ 388 (630)
...+|++||+|.+....
T Consensus 58 ~~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 58 KPCVLFIDEIDKLFPKS 74 (132)
T ss_dssp TSEEEEEETGGGTSHHC
T ss_pred cceeeeeccchhccccc
Confidence 35899999999987553
No 278
>PRK05580 primosome assembly protein PriA; Validated
Probab=94.44 E-value=0.19 Score=57.55 Aligned_cols=93 Identities=18% Similarity=0.249 Sum_probs=71.4
Q ss_pred ccccHHHHHHhccCCC-CCCCEEEEccchhhHHHHHHHHHh-CCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCc
Q 006824 453 DAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQ-KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVA 530 (630)
Q Consensus 453 ~~~k~~~l~~~l~~~~-~~~~iLIF~~s~~~~~~l~~~L~~-~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~ 530 (630)
...|....+..+.... .+.++||.+|+..-+..+.+.|++ .+..+..+||+++..+|.+......+|..+|+|+|..+
T Consensus 172 GSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsa 251 (679)
T PRK05580 172 GSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSA 251 (679)
T ss_pred CChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHH
Confidence 3456554444433222 245899999999999999999976 47889999999999999999999999999999999633
Q ss_pred ccCCCCCCccEEEEeC
Q 006824 531 ARGLDIKSIKSVVNFD 546 (630)
Q Consensus 531 ~~Gldi~~v~~VI~~~ 546 (630)
. -+.+.++..||.-+
T Consensus 252 l-~~p~~~l~liVvDE 266 (679)
T PRK05580 252 L-FLPFKNLGLIIVDE 266 (679)
T ss_pred h-cccccCCCEEEEEC
Confidence 2 25567788888644
No 279
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=94.43 E-value=0.43 Score=51.74 Aligned_cols=50 Identities=14% Similarity=0.359 Sum_probs=29.0
Q ss_pred ceeEEEecchhhhhcCC-cHHHHHHHHhhcC-CCCcEEEEeecccHHHHHHH
Q 006824 372 RVTYLVLDEADRMFDLG-FEPQIRSIVGQIR-PDRQTLLFSATMPRKVEKLA 421 (630)
Q Consensus 372 ~i~~lVvDEah~~~~~~-~~~~v~~i~~~l~-~~~q~l~~SAT~~~~~~~l~ 421 (630)
.+++|+|||+|.+.+.. ....+..+++.+. ...++|+.|...|..+..+.
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~ 245 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQ 245 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHH
Confidence 57799999999876432 2233444444433 34566655555565554443
No 280
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.42 E-value=0.41 Score=51.15 Aligned_cols=131 Identities=15% Similarity=0.197 Sum_probs=63.5
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEc--ccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHH
Q 006824 264 DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICA--PTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ 341 (630)
Q Consensus 264 d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~--Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~ 341 (630)
-+++++++|+|||.+..- |.+.+.. .|.++++++ |.|..|.++ ++.++...++.+...+.+......
T Consensus 102 vi~lvG~~GvGKTTtaaK--LA~~l~~------~G~kV~lV~~D~~R~aA~eQ---Lk~~a~~~~vp~~~~~~~~dp~~i 170 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTK--LAYYYQR------KGFKPCLVCADTFRAGAFDQ---LKQNATKARIPFYGSYTESDPVKI 170 (429)
T ss_pred EEEEECCCCCCHHHHHHH--HHHHHHH------CCCCEEEEcCcccchhHHHH---HHHHhhccCCeEEeecCCCCHHHH
Confidence 478999999999965332 2222221 144555554 345544433 344444345554433333221111
Q ss_pred HHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhc-CCcHHHHHHHHhhcCCCCcEEEEeecccHHHHHH
Q 006824 342 FKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFD-LGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKL 420 (630)
Q Consensus 342 ~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~-~~~~~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l 420 (630)
.. ..+.. ..-..+++||||=+-++.. ......+..+.....+..-++.++||........
T Consensus 171 ~~-----------------~~l~~--~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~ 231 (429)
T TIGR01425 171 AS-----------------EGVEK--FKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQ 231 (429)
T ss_pred HH-----------------HHHHH--HHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHH
Confidence 00 00100 0012455666666654321 1123344555555566666777888876555555
Q ss_pred HHHH
Q 006824 421 AREI 424 (630)
Q Consensus 421 ~~~~ 424 (630)
+..|
T Consensus 232 a~~F 235 (429)
T TIGR01425 232 AKAF 235 (429)
T ss_pred HHHH
Confidence 5554
No 281
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=94.39 E-value=0.37 Score=49.82 Aligned_cols=39 Identities=15% Similarity=0.201 Sum_probs=25.3
Q ss_pred ceeEEEecchhhhhcCCcHHHHHHHHhhcCCCCcEEEEe
Q 006824 372 RVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (630)
Q Consensus 372 ~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q~l~~S 410 (630)
...+|||||+|.+........+..++.......++|+.|
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEc
Confidence 467899999999733223455666677666666555543
No 282
>PRK09183 transposase/IS protein; Provisional
Probab=94.36 E-value=0.21 Score=50.04 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=18.0
Q ss_pred HHHcCCCEEEEeCCCChHHHH
Q 006824 258 IILSGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 258 ~il~g~d~l~~a~TGsGKT~~ 278 (630)
++..+.++++.||+|+|||..
T Consensus 98 ~i~~~~~v~l~Gp~GtGKThL 118 (259)
T PRK09183 98 FIERNENIVLLGPSGVGKTHL 118 (259)
T ss_pred chhcCCeEEEEeCCCCCHHHH
Confidence 356789999999999999954
No 283
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.32 E-value=0.34 Score=51.81 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=17.7
Q ss_pred CCEEEEeCCCChHHHHHHHHHHHHH
Q 006824 263 RDIIGIAKTGSGKTAAFVLPMIVHI 287 (630)
Q Consensus 263 ~d~l~~a~TGsGKT~~~~l~~l~~~ 287 (630)
.++++.|++|+|||.+ +-.++.++
T Consensus 56 ~~~lI~G~~GtGKT~l-~~~v~~~l 79 (394)
T PRK00411 56 LNVLIYGPPGTGKTTT-VKKVFEEL 79 (394)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHH
Confidence 6799999999999975 33344443
No 284
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=94.28 E-value=0.36 Score=50.31 Aligned_cols=40 Identities=15% Similarity=0.261 Sum_probs=24.7
Q ss_pred CceeEEEecchhhhhcCCcHHHHHHHHhhcCCCCcEEEEeec
Q 006824 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSAT 412 (630)
Q Consensus 371 ~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q~l~~SAT 412 (630)
....+|||||+|.+... ....+..++...+...++|+ +++
T Consensus 124 ~~~~vlilDe~~~l~~~-~~~~L~~~le~~~~~~~~Il-~~~ 163 (337)
T PRK12402 124 ADYKTILLDNAEALRED-AQQALRRIMEQYSRTCRFII-ATR 163 (337)
T ss_pred CCCcEEEEeCcccCCHH-HHHHHHHHHHhccCCCeEEE-EeC
Confidence 45678999999987532 23455566665555555544 444
No 285
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=94.23 E-value=1 Score=47.38 Aligned_cols=42 Identities=14% Similarity=0.222 Sum_probs=24.2
Q ss_pred cCceeEEEecchhhhhcCCcHHHHHHHHhhcCC-CCcEEEEeec
Q 006824 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRP-DRQTLLFSAT 412 (630)
Q Consensus 370 l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~-~~q~l~~SAT 412 (630)
....-+||+||+|.|..... ..+..++..... ..++.++.-+
T Consensus 121 ~~~~~IvvLDEid~L~~~~~-~~LY~L~r~~~~~~~~v~vi~i~ 163 (366)
T COG1474 121 KGKTVIVILDEVDALVDKDG-EVLYSLLRAPGENKVKVSIIAVS 163 (366)
T ss_pred cCCeEEEEEcchhhhccccc-hHHHHHHhhccccceeEEEEEEe
Confidence 34566899999999987653 444445443322 2334444433
No 286
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=94.22 E-value=0.13 Score=58.51 Aligned_cols=94 Identities=20% Similarity=0.278 Sum_probs=71.7
Q ss_pred CCccccHHH-HHHhccCCCCCCCEEEEccchhhHHHHHHHHHh----CCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEE
Q 006824 451 PSDAEKLPW-LLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQ----KGFKAAALHGDKDQASRMEILQKFKSGVYHVLI 525 (630)
Q Consensus 451 ~~~~~k~~~-l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~----~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLv 525 (630)
+....|... ++..+.....+.+++|.+|+..-+..+++.+.+ .++++..+||+++..+|..++....+|+..|+|
T Consensus 264 ~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiV 343 (630)
T TIGR00643 264 DVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVV 343 (630)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEE
Confidence 445556543 223333223456899999999998887776654 378999999999999999999999999999999
Q ss_pred EcC-CcccCCCCCCccEEEE
Q 006824 526 ATD-VAARGLDIKSIKSVVN 544 (630)
Q Consensus 526 aT~-~~~~Gldi~~v~~VI~ 544 (630)
+|. .+...+.+..+.+||.
T Consensus 344 gT~~ll~~~~~~~~l~lvVI 363 (630)
T TIGR00643 344 GTHALIQEKVEFKRLALVII 363 (630)
T ss_pred ecHHHHhccccccccceEEE
Confidence 995 4446678888888885
No 287
>PTZ00293 thymidine kinase; Provisional
Probab=94.21 E-value=0.34 Score=46.47 Aligned_cols=38 Identities=18% Similarity=0.150 Sum_probs=25.0
Q ss_pred CCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEccc
Q 006824 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPT 307 (630)
Q Consensus 262 g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Pt 307 (630)
|+=-++.|||+||||.- ||-.+.... ..+.+++++-|.
T Consensus 4 G~i~vi~GpMfSGKTte-LLr~i~~y~-------~ag~kv~~~kp~ 41 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTE-LMRLVKRFT-------YSEKKCVVIKYS 41 (211)
T ss_pred eEEEEEECCCCChHHHH-HHHHHHHHH-------HcCCceEEEEec
Confidence 45568899999999965 333333322 125668888884
No 288
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.14 E-value=0.2 Score=50.54 Aligned_cols=117 Identities=17% Similarity=0.164 Sum_probs=56.2
Q ss_pred HHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEE--CCC
Q 006824 259 ILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVY--GGM 336 (630)
Q Consensus 259 il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~--gg~ 336 (630)
+..|.-+++.|++|+|||.. ++.+..++..+ .+.+++++.- -.-..++...+..... ++...... ...
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l-~~~~~~~~~~~------~g~~vl~iS~-E~~~~~~~~r~~~~~~--~~~~~~~~~~~~~ 96 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTF-LREYALDLITQ------HGVRVGTISL-EEPVVRTARRLLGQYA--GKRLHLPDTVFIY 96 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHH-HHHHHHHHHHh------cCceEEEEEc-ccCHHHHHHHHHHHHh--CCCcccCCccccc
Confidence 34667889999999999964 33333333221 2556777753 2223344444433322 22211100 011
Q ss_pred ChHHHH----HHHHcCCcEE-Ee-----ChHHHHHHHHccccccCceeEEEecchhhhhcC
Q 006824 337 SKLDQF----KELKAGCEIV-IA-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMFDL 387 (630)
Q Consensus 337 ~~~~~~----~~l~~~~dIi-v~-----Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~ 387 (630)
. ...+ ..+.....++ +- |+..+...+..-.. -..+++||||..+.+...
T Consensus 97 ~-~~~~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~~~-~~~~~~vvID~l~~l~~~ 155 (271)
T cd01122 97 T-LEEFDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYMAV-SHGIQHIIIDNLSIMVSD 155 (271)
T ss_pred c-HHHHHHHHHHhcCCCcEEEEcCCCccCHHHHHHHHHHHHh-cCCceEEEECCHHHHhcc
Confidence 1 1111 1222112222 21 44555555442211 236889999999987643
No 289
>PF13173 AAA_14: AAA domain
Probab=94.03 E-value=0.54 Score=41.40 Aligned_cols=38 Identities=21% Similarity=0.439 Sum_probs=26.2
Q ss_pred ceeEEEecchhhhhcCCcHHHHHHHHhhcCCCCcEEEEeecc
Q 006824 372 RVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATM 413 (630)
Q Consensus 372 ~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q~l~~SAT~ 413 (630)
.-.+|+|||+|.+-+ +...+..+.... ++.++++ |++.
T Consensus 61 ~~~~i~iDEiq~~~~--~~~~lk~l~d~~-~~~~ii~-tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD--WEDALKFLVDNG-PNIKIIL-TGSS 98 (128)
T ss_pred CCcEEEEehhhhhcc--HHHHHHHHHHhc-cCceEEE-Eccc
Confidence 567899999999753 577888887755 4455554 4443
No 290
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.00 E-value=0.33 Score=52.87 Aligned_cols=19 Identities=26% Similarity=0.468 Sum_probs=15.3
Q ss_pred CCEEEEeCCCChHHHHHHH
Q 006824 263 RDIIGIAKTGSGKTAAFVL 281 (630)
Q Consensus 263 ~d~l~~a~TGsGKT~~~~l 281 (630)
+.+|++||.|+|||.++.+
T Consensus 36 ha~Lf~Gp~G~GKTT~Ari 54 (491)
T PRK14964 36 QSILLVGASGVGKTTCARI 54 (491)
T ss_pred ceEEEECCCCccHHHHHHH
Confidence 3689999999999975443
No 291
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=93.99 E-value=0.19 Score=51.69 Aligned_cols=64 Identities=25% Similarity=0.211 Sum_probs=40.8
Q ss_pred HHHcCCCCCcHHHHHHHHHHH-cCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHH
Q 006824 240 ISKQGYEKPTSIQCQALPIIL-SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELA 311 (630)
Q Consensus 240 l~~~~~~~~~~~Q~~~i~~il-~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La 311 (630)
+.+.|. +++.|...+..+. .+.+++++|+||||||.. +-.++..+...+ ..-+++++=.+.||.
T Consensus 123 lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~~~-----~~~rivtiEd~~El~ 187 (323)
T PRK13833 123 YVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAEIVASA-----PEDRLVILEDTAEIQ 187 (323)
T ss_pred HHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHHhcCC-----CCceEEEecCCcccc
Confidence 344443 5677877775554 567999999999999963 444455543222 133567777777763
No 292
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.94 E-value=0.18 Score=55.66 Aligned_cols=93 Identities=19% Similarity=0.271 Sum_probs=70.8
Q ss_pred ccccHHHHHHhccCCC-CCCCEEEEccchhhHHHHHHHHHhC-CCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCc
Q 006824 453 DAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQK-GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVA 530 (630)
Q Consensus 453 ~~~k~~~l~~~l~~~~-~~~~iLIF~~s~~~~~~l~~~L~~~-~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~ 530 (630)
...|....+..+.... .++++||.+|+..-+..+...|++. +..+..+||+++..+|.++.....+|+.+|+|+|..+
T Consensus 7 GsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsa 86 (505)
T TIGR00595 7 GSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSA 86 (505)
T ss_pred CCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHH
Confidence 3456555544443332 3457999999999999999988764 7789999999999999999999999999999999643
Q ss_pred ccCCCCCCccEEEEeC
Q 006824 531 ARGLDIKSIKSVVNFD 546 (630)
Q Consensus 531 ~~Gldi~~v~~VI~~~ 546 (630)
- -..++++..||.-.
T Consensus 87 l-f~p~~~l~lIIVDE 101 (505)
T TIGR00595 87 L-FLPFKNLGLIIVDE 101 (505)
T ss_pred H-cCcccCCCEEEEEC
Confidence 2 24567778888543
No 293
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=93.93 E-value=0.75 Score=45.15 Aligned_cols=52 Identities=10% Similarity=0.083 Sum_probs=32.0
Q ss_pred cCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHH
Q 006824 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 321 (630)
.|.-+++.+++|+|||.. ++.++..... ++.++++++.. +-..+..+.+..+
T Consensus 23 ~g~~~~i~G~~G~GKTtl-~~~~~~~~~~-------~g~~~~yi~~e-~~~~~~~~~~~~~ 74 (230)
T PRK08533 23 AGSLILIEGDESTGKSIL-SQRLAYGFLQ-------NGYSVSYVSTQ-LTTTEFIKQMMSL 74 (230)
T ss_pred CCcEEEEECCCCCCHHHH-HHHHHHHHHh-------CCCcEEEEeCC-CCHHHHHHHHHHh
Confidence 467889999999999964 3444444433 25567888743 3334444444443
No 294
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.90 E-value=0.31 Score=49.49 Aligned_cols=20 Identities=35% Similarity=0.474 Sum_probs=15.8
Q ss_pred cCCCEEEEeCCCChHHHHHH
Q 006824 261 SGRDIIGIAKTGSGKTAAFV 280 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~~~ 280 (630)
.++.+++++|||+|||.+..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLA 212 (282)
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34578899999999997533
No 295
>PRK13342 recombination factor protein RarA; Reviewed
Probab=93.89 E-value=0.52 Score=50.75 Aligned_cols=37 Identities=27% Similarity=0.350 Sum_probs=22.8
Q ss_pred ceeEEEecchhhhhcCCcHHHHHHHHhhcCCCCcEEEEeecc
Q 006824 372 RVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATM 413 (630)
Q Consensus 372 ~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q~l~~SAT~ 413 (630)
...+|+|||+|++.. .+...++..+.. ..++++.+|.
T Consensus 92 ~~~vL~IDEi~~l~~----~~q~~LL~~le~-~~iilI~att 128 (413)
T PRK13342 92 RRTILFIDEIHRFNK----AQQDALLPHVED-GTITLIGATT 128 (413)
T ss_pred CceEEEEechhhhCH----HHHHHHHHHhhc-CcEEEEEeCC
Confidence 457899999999652 333444444443 4456666654
No 296
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.87 E-value=0.43 Score=50.98 Aligned_cols=132 Identities=15% Similarity=0.164 Sum_probs=65.1
Q ss_pred cCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHH
Q 006824 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 340 (630)
.|+-+.++||||+|||.+....+-..++.. +.....+|.+.+.-.+ ..+.+..++..+|+.+...
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~-----~~~~v~~i~~d~~rig--alEQL~~~a~ilGvp~~~v-------- 254 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRH-----GADKVALLTTDSYRIG--GHEQLRIYGKLLGVSVRSI-------- 254 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhc-----CCCeEEEEecCCcchh--HHHHHHHHHHHcCCceecC--------
Confidence 456789999999999975432222222211 1122356666663332 2333555555455544322
Q ss_pred HHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhc-CCcHHHHHHHHhhcCCCCcEEEEeecccHH-HH
Q 006824 341 QFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFD-LGFEPQIRSIVGQIRPDRQTLLFSATMPRK-VE 418 (630)
Q Consensus 341 ~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~-~~~~~~v~~i~~~l~~~~q~l~~SAT~~~~-~~ 418 (630)
.++..+...+. .+...++++||.+=+... ......+..+.....+...++++|||.... +.
T Consensus 255 -------------~~~~dl~~al~----~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~ 317 (420)
T PRK14721 255 -------------KDIADLQLMLH----ELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLD 317 (420)
T ss_pred -------------CCHHHHHHHHH----HhcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHH
Confidence 22222222222 245667788887532110 011223333322223456678899997544 55
Q ss_pred HHHHHH
Q 006824 419 KLAREI 424 (630)
Q Consensus 419 ~l~~~~ 424 (630)
..+..|
T Consensus 318 ~~~~~f 323 (420)
T PRK14721 318 EVISAY 323 (420)
T ss_pred HHHHHh
Confidence 555554
No 297
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.86 E-value=0.36 Score=47.24 Aligned_cols=128 Identities=16% Similarity=0.223 Sum_probs=65.8
Q ss_pred cCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHH
Q 006824 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 340 (630)
.|.-+++.+++|+|||...+--+.+.+.. .+.++++++- .+-..++.+.+..+ |+.. ..
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~-------~ge~vlyvs~-ee~~~~l~~~~~s~----g~d~---------~~ 76 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKN-------FGEKVLYVSF-EEPPEELIENMKSF----GWDL---------EE 76 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHH-------HT--EEEEES-SS-HHHHHHHHHTT----TS-H---------HH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhh-------cCCcEEEEEe-cCCHHHHHHHHHHc----CCcH---------HH
Confidence 34678999999999997533333344322 0445777763 34445555555544 2210 00
Q ss_pred HHHHHHcC-CcEE----------EeChHHHHHHHHccccccCceeEEEecchhhhhcC----CcHHHHHHHHhhcCCCCc
Q 006824 341 QFKELKAG-CEIV----------IATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDL----GFEPQIRSIVGQIRPDRQ 405 (630)
Q Consensus 341 ~~~~l~~~-~dIi----------v~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~----~~~~~v~~i~~~l~~~~q 405 (630)
....+ -.++ -..+..+...+....... +.+.+|||-...+... .+...+..+...++....
T Consensus 77 ---~~~~g~l~~~d~~~~~~~~~~~~~~~l~~~i~~~i~~~-~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~~ 152 (226)
T PF06745_consen 77 ---YEDSGKLKIIDAFPERIGWSPNDLEELLSKIREAIEEL-KPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRGV 152 (226)
T ss_dssp ---HHHTTSEEEEESSGGGST-TSCCHHHHHHHHHHHHHHH-TSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTTE
T ss_pred ---HhhcCCEEEEecccccccccccCHHHHHHHHHHHHHhc-CCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCCC
Confidence 00111 1111 123344444333221112 3389999999987322 244556667777766667
Q ss_pred EEEEeecc
Q 006824 406 TLLFSATM 413 (630)
Q Consensus 406 ~l~~SAT~ 413 (630)
++++++..
T Consensus 153 t~llt~~~ 160 (226)
T PF06745_consen 153 TTLLTSEM 160 (226)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEcc
Confidence 77777764
No 298
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=93.85 E-value=0.18 Score=53.92 Aligned_cols=32 Identities=25% Similarity=0.234 Sum_probs=25.4
Q ss_pred CcHHHHHHHHHHHcCCCEEEEeCCCChHHHHH
Q 006824 248 PTSIQCQALPIILSGRDIIGIAKTGSGKTAAF 279 (630)
Q Consensus 248 ~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~ 279 (630)
+-......+..+..++++++.+++|+|||..+
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA 211 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVA 211 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHH
Confidence 34455566777888999999999999999653
No 299
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=93.81 E-value=0.59 Score=54.43 Aligned_cols=42 Identities=24% Similarity=0.286 Sum_probs=25.4
Q ss_pred CceeEEEecchhhhhcCCcHHHHHHHHhhcCCCCcEEEEeeccc
Q 006824 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMP 414 (630)
Q Consensus 371 ~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q~l~~SAT~~ 414 (630)
.+++++||||+|+|.... .+.+..+++.......+|+.+ |-+
T Consensus 119 ~~~KV~IIDEad~lt~~a-~NaLLK~LEEpP~~~~fIl~t-t~~ 160 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQG-FNALLKIVEEPPEHLKFIFAT-TEP 160 (824)
T ss_pred CCceEEEEechhhcCHHH-HHHHHHHHhCCCCCeEEEEEe-CCh
Confidence 578899999999987433 334444555544444444443 433
No 300
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=93.72 E-value=0.18 Score=59.40 Aligned_cols=98 Identities=14% Similarity=0.174 Sum_probs=74.4
Q ss_pred EEEcCCccccHHHHHH-hccCCCCCCCEEEEccchhhHHHHHHHHHh----CCCcEEEEeCCCCHHHHHHHHHHhhcCCc
Q 006824 447 VHVIPSDAEKLPWLLE-KLPGMIDDGDVLVFASKKTTVDEIESQLAQ----KGFKAAALHGDKDQASRMEILQKFKSGVY 521 (630)
Q Consensus 447 ~~~~~~~~~k~~~l~~-~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~----~~~~~~~ihg~~~~~~r~~~~~~F~~g~~ 521 (630)
...-+....|...... .+.......+++|.+||..-|...++.|.. .++.+..++|..+..++.+++..+.+|+.
T Consensus 476 Ll~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~ 555 (926)
T TIGR00580 476 LVCGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKI 555 (926)
T ss_pred EEECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCc
Confidence 3444455566543322 222223456899999999999988887765 36788999999999999999999999999
Q ss_pred eEEEEcC-CcccCCCCCCccEEEE
Q 006824 522 HVLIATD-VAARGLDIKSIKSVVN 544 (630)
Q Consensus 522 ~VLvaT~-~~~~Gldi~~v~~VI~ 544 (630)
.|+|+|. .+...+.+.++.+||.
T Consensus 556 dIVIGTp~ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 556 DILIGTHKLLQKDVKFKDLGLLII 579 (926)
T ss_pred eEEEchHHHhhCCCCcccCCEEEe
Confidence 9999995 5556788889998885
No 301
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=93.69 E-value=0.48 Score=51.40 Aligned_cols=148 Identities=14% Similarity=0.168 Sum_probs=85.3
Q ss_pred CCCcHHHHHHHHHHHc------C----CCEEEEeCCCChHHHHHH-HHHHHHHhcCCcccccCCCeEEEEcccHHHHHHH
Q 006824 246 EKPTSIQCQALPIILS------G----RDIIGIAKTGSGKTAAFV-LPMIVHIMDQPELQKEEGPIGVICAPTRELAHQI 314 (630)
Q Consensus 246 ~~~~~~Q~~~i~~il~------g----~d~l~~a~TGsGKT~~~~-l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~ 314 (630)
..+.|+|.-++-.++. | +..+|..|-+-|||.... +.+...+.. ...+..+.|++|+.+-+.+.
T Consensus 60 ~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~-----~~~~~~~~i~A~s~~qa~~~ 134 (546)
T COG4626 60 ESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLN-----WRSGAGIYILAPSVEQAANS 134 (546)
T ss_pred cccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhh-----hhcCCcEEEEeccHHHHHHh
Confidence 3577999999988882 1 356888888899995433 222222222 13467799999999999998
Q ss_pred HHHHHHHhhhcC-ceEEEEECCCChHHHHHHHHc-CCcEEEeChHHHHHHHHcc--ccccCceeEEEecchhhhhcCCcH
Q 006824 315 YLETKKFAKSHG-IRVSAVYGGMSKLDQFKELKA-GCEIVIATPGRLIDMLKMK--ALTMSRVTYLVLDEADRMFDLGFE 390 (630)
Q Consensus 315 ~~~~~~~~~~~~-~~~~~~~gg~~~~~~~~~l~~-~~dIiv~Tp~~L~~~l~~~--~~~l~~i~~lVvDEah~~~~~~~~ 390 (630)
.+.++....... ++.. ..+.. ...|+..--...+..+... ...-.+..+.|+||.|.....+
T Consensus 135 F~~ar~mv~~~~~l~~~------------~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~-- 200 (546)
T COG4626 135 FNPARDMVKRDDDLRDL------------CNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE-- 200 (546)
T ss_pred hHHHHHHHHhCcchhhh------------hccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH--
Confidence 888887765432 0000 00000 0112222111112222222 1222356789999999866442
Q ss_pred HHHHHHHhhc--CCCCcEEEEeec
Q 006824 391 PQIRSIVGQI--RPDRQTLLFSAT 412 (630)
Q Consensus 391 ~~v~~i~~~l--~~~~q~l~~SAT 412 (630)
..+..+...+ +++.+++..|..
T Consensus 201 ~~~~~~~~g~~ar~~~l~~~ITT~ 224 (546)
T COG4626 201 DMYSEAKGGLGARPEGLVVYITTS 224 (546)
T ss_pred HHHHHHHhhhccCcCceEEEEecC
Confidence 4555555544 467777777763
No 302
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=93.69 E-value=0.33 Score=61.89 Aligned_cols=63 Identities=27% Similarity=0.272 Sum_probs=44.9
Q ss_pred CCCcHHHHHHHHHHHcC--CCEEEEeCCCChHHHHHH--HHHHHHHhcCCcccccCCCeEEEEcccHHHHHHH
Q 006824 246 EKPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFV--LPMIVHIMDQPELQKEEGPIGVICAPTRELAHQI 314 (630)
Q Consensus 246 ~~~~~~Q~~~i~~il~g--~d~l~~a~TGsGKT~~~~--l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~ 314 (630)
..+++.|.+|+..++.+ +-+++.+..|+|||.+.. +-.+..++. ..+..++.++||-..+.++
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~------~~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFE------SEQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHH------hcCCeEEEEeChHHHHHHH
Confidence 47999999999999876 556888999999996431 122222222 2367789999998777654
No 303
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=93.59 E-value=0.14 Score=57.01 Aligned_cols=125 Identities=18% Similarity=0.203 Sum_probs=72.3
Q ss_pred CCCcHHHHHHHHHHHcC--CCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHH-HHHHHHh
Q 006824 246 EKPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIY-LETKKFA 322 (630)
Q Consensus 246 ~~~~~~Q~~~i~~il~g--~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~-~~~~~~~ 322 (630)
...+|+|.+.+..+..- +.++++.++-+|||.+ ++-++.+.+.+. ...+|++.||..+|..+. ..+..+.
T Consensus 15 ~~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~-~~n~~g~~i~~~------P~~~l~v~Pt~~~a~~~~~~rl~Pmi 87 (557)
T PF05876_consen 15 TDRTPYLREIMDALSDPSVREVVVMKSAQVGKTEL-LLNWIGYSIDQD------PGPMLYVQPTDDAAKDFSKERLDPMI 87 (557)
T ss_pred CCCChhHHHHHHhcCCcCccEEEEEEcchhhHhHH-HHhhceEEEEeC------CCCEEEEEEcHHHHHHHHHHHHHHHH
Confidence 46789999999887754 6899999999999985 333333333321 233799999999999887 3444443
Q ss_pred hhcC-ceEEEEEC----CCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhh
Q 006824 323 KSHG-IRVSAVYG----GMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (630)
Q Consensus 323 ~~~~-~~~~~~~g----g~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~ 385 (630)
.... ++ ..+.. .....-..+. +.|..|.++.-..- ..+.-..+.++++||+|.+-
T Consensus 88 ~~sp~l~-~~~~~~~~~~~~~t~~~k~-f~gg~l~~~ga~S~------~~l~s~~~r~~~~DEvD~~p 147 (557)
T PF05876_consen 88 RASPVLR-RKLSPSKSRDSGNTILYKR-FPGGFLYLVGANSP------SNLRSRPARYLLLDEVDRYP 147 (557)
T ss_pred HhCHHHH-HHhCchhhcccCCchhhee-cCCCEEEEEeCCCC------cccccCCcCEEEEechhhcc
Confidence 3221 11 11111 0111111112 22444555432111 11223468899999999974
No 304
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=93.52 E-value=0.41 Score=49.49 Aligned_cols=41 Identities=12% Similarity=0.213 Sum_probs=25.8
Q ss_pred cCceeEEEecchhhhhcCCcHHHHHHHHhhcCCCCcEEEEee
Q 006824 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSA 411 (630)
Q Consensus 370 l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q~l~~SA 411 (630)
.....++||||||.|... -...+...+..-+.+..+++.+.
T Consensus 107 ~~~~kviiidead~mt~~-A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 107 EGGYKVVIIDEADKLTED-AANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred CCCceEEEeCcHHHHhHH-HHHHHHHHhccCCCCeEEEEEcC
Confidence 357899999999998742 24445555555445555555443
No 305
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.52 E-value=0.27 Score=48.59 Aligned_cols=110 Identities=24% Similarity=0.274 Sum_probs=55.3
Q ss_pred cCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEc---ccHHHHHHHHHHHHHHhhhcCceEEEEECCCC
Q 006824 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICA---PTRELAHQIYLETKKFAKSHGIRVSAVYGGMS 337 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~---Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~ 337 (630)
.|.-++++|++|+|||. +++-++.+...+ .+..++++. |..+++.++.... .++....+..+..
T Consensus 12 ~G~l~lI~G~~G~GKT~-~~~~~~~~~~~~------~g~~vly~s~E~~~~~~~~r~~~~~------~~~~~~~~~~~~~ 78 (242)
T cd00984 12 PGDLIIIAARPSMGKTA-FALNIAENIAKK------QGKPVLFFSLEMSKEQLLQRLLASE------SGISLSKLRTGSL 78 (242)
T ss_pred CCeEEEEEeCCCCCHHH-HHHHHHHHHHHh------CCCceEEEeCCCCHHHHHHHHHHHh------cCCCHHHHhcCCC
Confidence 45678999999999996 455444444332 155688887 3444444332111 1221111111111
Q ss_pred hHHHH-------HHHHcCCcEEE-----eChHHHHHHHHccccccCceeEEEecchhhhh
Q 006824 338 KLDQF-------KELKAGCEIVI-----ATPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (630)
Q Consensus 338 ~~~~~-------~~l~~~~dIiv-----~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~ 385 (630)
....+ ..+. ...+.| .|+..|...+..-.. -..+++||||=.+.+.
T Consensus 79 ~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~l~~~i~~~~~-~~~~~~vvID~l~~l~ 136 (242)
T cd00984 79 SDEDWERLAEAIGELK-ELPIYIDDSSSLTVSDIRSRARRLKK-EHGLGLIVIDYLQLMS 136 (242)
T ss_pred CHHHHHHHHHHHHHHh-cCCEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcCchhcC
Confidence 11111 1121 234444 245555555443211 1278999999998764
No 306
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=93.50 E-value=0.48 Score=51.93 Aligned_cols=17 Identities=24% Similarity=0.374 Sum_probs=14.9
Q ss_pred CCCEEEEeCCCChHHHH
Q 006824 262 GRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 262 g~d~l~~a~TGsGKT~~ 278 (630)
.+.+++.||+|+|||+.
T Consensus 216 p~GILLyGPPGTGKT~L 232 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLI 232 (512)
T ss_pred CcceEEECCCCCcHHHH
Confidence 46899999999999964
No 307
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=93.50 E-value=0.87 Score=44.55 Aligned_cols=51 Identities=18% Similarity=0.184 Sum_probs=29.3
Q ss_pred cCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHH
Q 006824 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKK 320 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~ 320 (630)
.|.-+++.+++|+|||.. ++.++.+.+.. +..++++.- .+...++...+..
T Consensus 19 ~G~~~~i~G~~G~GKT~l-~~~~~~~~~~~-------g~~~~~is~-e~~~~~i~~~~~~ 69 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIF-CLHFAYKGLRD-------GDPVIYVTT-EESRESIIRQAAQ 69 (229)
T ss_pred CCeEEEEECCCCCChHHH-HHHHHHHHHhc-------CCeEEEEEc-cCCHHHHHHHHHH
Confidence 457889999999999964 33333333222 445667653 3333444444333
No 308
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.49 E-value=0.39 Score=47.41 Aligned_cols=52 Identities=17% Similarity=0.218 Sum_probs=33.5
Q ss_pred cCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHH
Q 006824 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 321 (630)
.|.-+++.|++|+|||.. ++.++...+. +|.++++++ +.+-..|+.+.+..+
T Consensus 20 ~gs~~lI~G~pGsGKT~l-a~~~l~~~~~-------~ge~~lyvs-~ee~~~~i~~~~~~~ 71 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIF-SQQFLWNGLQ-------MGEPGIYVA-LEEHPVQVRRNMAQF 71 (237)
T ss_pred CCeEEEEEcCCCCCHHHH-HHHHHHHHHH-------cCCcEEEEE-eeCCHHHHHHHHHHh
Confidence 356789999999999974 3333333222 256688877 455666666666554
No 309
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.48 E-value=1.1 Score=44.68 Aligned_cols=149 Identities=17% Similarity=0.283 Sum_probs=84.6
Q ss_pred CCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcC-----CCEEEEeCCCChHHHHHHHHHHHHHhcCCccccc
Q 006824 222 RPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSG-----RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKE 296 (630)
Q Consensus 222 ~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g-----~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~ 296 (630)
+|-..|.+..=-....++|+..-+- |+ -+|.++.| +.+|+.+|+|+||+ |+.-++..-..
T Consensus 127 KPNVkWsDVAGLE~AKeALKEAVIL---PI---KFPqlFtGkR~PwrgiLLyGPPGTGKS--YLAKAVATEAn------- 191 (439)
T KOG0739|consen 127 KPNVKWSDVAGLEGAKEALKEAVIL---PI---KFPQLFTGKRKPWRGILLYGPPGTGKS--YLAKAVATEAN------- 191 (439)
T ss_pred CCCCchhhhccchhHHHHHHhheee---cc---cchhhhcCCCCcceeEEEeCCCCCcHH--HHHHHHHhhcC-------
Confidence 3445677654334444555443221 11 24677877 46899999999999 66555544211
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEE
Q 006824 297 EGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYL 376 (630)
Q Consensus 297 ~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~l 376 (630)
-..+-+.+..|+..|.-+-.++.+. |..+.+ -+.-++|
T Consensus 192 ---STFFSvSSSDLvSKWmGESEkLVkn----------------------------------LFemAR-----e~kPSII 229 (439)
T KOG0739|consen 192 ---STFFSVSSSDLVSKWMGESEKLVKN----------------------------------LFEMAR-----ENKPSII 229 (439)
T ss_pred ---CceEEeehHHHHHHHhccHHHHHHH----------------------------------HHHHHH-----hcCCcEE
Confidence 2678888889998887666666431 111111 1245678
Q ss_pred EecchhhhhcCC---cHHHHHH----HHhhcC----CCCcEEEEeecccHH-HHHHHHHHcCC
Q 006824 377 VLDEADRMFDLG---FEPQIRS----IVGQIR----PDRQTLLFSATMPRK-VEKLAREILSD 427 (630)
Q Consensus 377 VvDEah~~~~~~---~~~~v~~----i~~~l~----~~~q~l~~SAT~~~~-~~~l~~~~~~~ 427 (630)
.|||+|.|.... -....+. ++-+++ .+--++.+.||..|- +..-++.-+..
T Consensus 230 FiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFek 292 (439)
T KOG0739|consen 230 FIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEK 292 (439)
T ss_pred EeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHHHhhc
Confidence 999999876432 1122222 222332 345688899996554 33344444433
No 310
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=93.38 E-value=0.57 Score=43.26 Aligned_cols=41 Identities=12% Similarity=0.293 Sum_probs=26.4
Q ss_pred CceeEEEecchhhhhcCCcHHHHHHHHhhcCCCCcEEEEeec
Q 006824 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSAT 412 (630)
Q Consensus 371 ~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q~l~~SAT 412 (630)
....++|||+||.|.... .+.+...++.-+....++++|..
T Consensus 101 ~~~KviiI~~ad~l~~~a-~NaLLK~LEepp~~~~fiL~t~~ 141 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEEA-QNALLKTLEEPPENTYFILITNN 141 (162)
T ss_dssp SSSEEEEEETGGGS-HHH-HHHHHHHHHSTTTTEEEEEEES-
T ss_pred CCceEEEeehHhhhhHHH-HHHHHHHhcCCCCCEEEEEEECC
Confidence 568899999999976432 45566666665556655555544
No 311
>CHL00181 cbbX CbbX; Provisional
Probab=93.29 E-value=1 Score=45.78 Aligned_cols=18 Identities=28% Similarity=0.357 Sum_probs=15.0
Q ss_pred CCCEEEEeCCCChHHHHH
Q 006824 262 GRDIIGIAKTGSGKTAAF 279 (630)
Q Consensus 262 g~d~l~~a~TGsGKT~~~ 279 (630)
+.++++.||+|+|||.++
T Consensus 59 ~~~ill~G~pGtGKT~lA 76 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVA 76 (287)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456899999999999653
No 312
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.29 E-value=1.1 Score=47.66 Aligned_cols=127 Identities=16% Similarity=0.198 Sum_probs=62.6
Q ss_pred CCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEE-ccc-HHHHHHHHHHHHHHhhhcCceEEEEECCCChH
Q 006824 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC-APT-RELAHQIYLETKKFAKSHGIRVSAVYGGMSKL 339 (630)
Q Consensus 262 g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil-~Pt-r~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~ 339 (630)
+.-+++++|+|+|||.+..-.+...... .|.++.++ +-+ |..+.. .+..++...++....
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~-------~G~~V~Lit~Dt~R~aA~e---QLk~yAe~lgvp~~~-------- 284 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLH-------MGKSVSLYTTDNYRIAAIE---QLKRYADTMGMPFYP-------- 284 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHh-------cCCeEEEecccchhhhHHH---HHHHHHHhcCCCeee--------
Confidence 3457899999999997643333222222 13344444 333 444432 344454443442211
Q ss_pred HHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhh-cCCcHHHHHHHHhhcC---CCCcEEEEeecccH
Q 006824 340 DQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF-DLGFEPQIRSIVGQIR---PDRQTLLFSATMPR 415 (630)
Q Consensus 340 ~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~-~~~~~~~v~~i~~~l~---~~~q~l~~SAT~~~ 415 (630)
+..+..+...+. -...++||||=+-++. +......+..++..+. +...++.+|||...
T Consensus 285 -------------~~~~~~l~~~l~-----~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~ 346 (432)
T PRK12724 285 -------------VKDIKKFKETLA-----RDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY 346 (432)
T ss_pred -------------hHHHHHHHHHHH-----hCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH
Confidence 011222333332 1467889999655432 1112233344444432 23457888999876
Q ss_pred -HHHHHHHHH
Q 006824 416 -KVEKLAREI 424 (630)
Q Consensus 416 -~~~~l~~~~ 424 (630)
.+...+..|
T Consensus 347 ~~~~~~~~~f 356 (432)
T PRK12724 347 HHTLTVLKAY 356 (432)
T ss_pred HHHHHHHHHh
Confidence 455555544
No 313
>PLN03025 replication factor C subunit; Provisional
Probab=93.27 E-value=0.93 Score=46.94 Aligned_cols=39 Identities=21% Similarity=0.275 Sum_probs=23.8
Q ss_pred ceeEEEecchhhhhcCCcHHHHHHHHhhcCCCCcEEEEeec
Q 006824 372 RVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSAT 412 (630)
Q Consensus 372 ~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q~l~~SAT 412 (630)
...++||||+|.|.... ...+..++........++ |+++
T Consensus 99 ~~kviiiDE~d~lt~~a-q~aL~~~lE~~~~~t~~i-l~~n 137 (319)
T PLN03025 99 RHKIVILDEADSMTSGA-QQALRRTMEIYSNTTRFA-LACN 137 (319)
T ss_pred CeEEEEEechhhcCHHH-HHHHHHHHhcccCCceEE-EEeC
Confidence 57899999999976432 344555555544444444 4444
No 314
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=93.26 E-value=0.22 Score=47.71 Aligned_cols=41 Identities=22% Similarity=0.223 Sum_probs=25.3
Q ss_pred CceeEEEecchhhhhcCCcHHHHHHHHhhcCCCCcEEEEeec
Q 006824 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSAT 412 (630)
Q Consensus 371 ~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q~l~~SAT 412 (630)
.+.++||+||||.|.+- -...++..+..+....++.+...+
T Consensus 112 grhKIiILDEADSMT~g-AQQAlRRtMEiyS~ttRFalaCN~ 152 (333)
T KOG0991|consen 112 GRHKIIILDEADSMTAG-AQQALRRTMEIYSNTTRFALACNQ 152 (333)
T ss_pred CceeEEEeeccchhhhH-HHHHHHHHHHHHcccchhhhhhcc
Confidence 57889999999998743 244455555555444444443333
No 315
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=93.20 E-value=0.28 Score=50.63 Aligned_cols=66 Identities=29% Similarity=0.330 Sum_probs=42.1
Q ss_pred HHHHHHcCCCCCcHHHHHHHHH-HHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHH
Q 006824 237 MHAISKQGYEKPTSIQCQALPI-ILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTREL 310 (630)
Q Consensus 237 ~~~l~~~~~~~~~~~Q~~~i~~-il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~L 310 (630)
++.+.+.|. +++.|...+.. +..+++++++|+||||||. ++-.++..+...+ ...++++|-.+.+|
T Consensus 124 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTT-ll~aL~~~~~~~~-----~~~rivtIEd~~El 190 (319)
T PRK13894 124 LDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTT-LVNAIINEMVIQD-----PTERVFIIEDTGEI 190 (319)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHhhhhcC-----CCceEEEEcCCCcc
Confidence 344444454 56777777765 4567899999999999995 3444444432211 13457777777766
No 316
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=93.13 E-value=1.8 Score=43.38 Aligned_cols=32 Identities=22% Similarity=0.264 Sum_probs=21.9
Q ss_pred CCcHHHHHHHHHHH----cCC-CEEEEeCCCChHHHH
Q 006824 247 KPTSIQCQALPIIL----SGR-DIIGIAKTGSGKTAA 278 (630)
Q Consensus 247 ~~~~~Q~~~i~~il----~g~-d~l~~a~TGsGKT~~ 278 (630)
-+++.+.+++..+. .+. .+++.|++|+|||..
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl 59 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTL 59 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH
Confidence 34556666665543 233 588999999999965
No 317
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.12 E-value=0.85 Score=51.14 Aligned_cols=42 Identities=17% Similarity=0.239 Sum_probs=24.3
Q ss_pred CceeEEEecchhhhhcCCcHHHHHHHHhhcCCCCcEEEEeeccc
Q 006824 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMP 414 (630)
Q Consensus 371 ~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q~l~~SAT~~ 414 (630)
.+.+++||||+|+|.... ...+..++...+.... ++|++|-+
T Consensus 117 gk~KV~IIDEVh~LS~~A-~NALLKtLEEPP~~v~-FILaTtd~ 158 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHS-FNALLKTLEEPPEHVK-FLFATTDP 158 (702)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhcCCCCcE-EEEEECCh
Confidence 467899999999876433 2334444444433443 44444543
No 318
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=93.10 E-value=0.11 Score=60.83 Aligned_cols=100 Identities=20% Similarity=0.211 Sum_probs=78.5
Q ss_pred CCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCccEEEEeCCC
Q 006824 469 DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIA 548 (630)
Q Consensus 469 ~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p 548 (630)
...++|||+.-....+.+...+.-.++.+..--++ ++-...+..|++ --.+|+-+...+-|+|+-.+.+|+..+|-
T Consensus 1220 ~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~t---~d~~dc~~~fk~-I~clll~~~~~~~GLNL~eA~Hvfl~ePi 1295 (1394)
T KOG0298|consen 1220 EQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGET---EDFDDCIICFKS-IDCLLLFVSKGSKGLNLIEATHVFLVEPI 1295 (1394)
T ss_pred cCceEEEEEehHHHHHHHHHHHHhhhhHhhhccCC---cchhhhhhhccc-ceEEEEEeccCcccccHHhhhhhheeccc
Confidence 44689999998888888888887776665554443 334556777776 33356778888999999999999999999
Q ss_pred CCHHHHHHHhhhcccCCCCCeEEE
Q 006824 549 RDMDMHVHRIGRTGRAGDKDGTAY 572 (630)
Q Consensus 549 ~~~~~y~QriGR~gR~g~~~g~~~ 572 (630)
-|+..-.|.+||++|.|++..+.+
T Consensus 1296 LN~~~E~QAigRvhRiGQ~~pT~V 1319 (1394)
T KOG0298|consen 1296 LNPGDEAQAIGRVHRIGQKRPTFV 1319 (1394)
T ss_pred cCchHHHhhhhhhhhcccccchhh
Confidence 999999999999999996555544
No 319
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.00 E-value=0.99 Score=47.67 Aligned_cols=14 Identities=29% Similarity=0.309 Sum_probs=12.6
Q ss_pred EEEEeCCCChHHHH
Q 006824 265 IIGIAKTGSGKTAA 278 (630)
Q Consensus 265 ~l~~a~TGsGKT~~ 278 (630)
+++.||.|+|||..
T Consensus 41 ~L~~Gp~G~GKTtl 54 (363)
T PRK14961 41 WLLSGTRGVGKTTI 54 (363)
T ss_pred EEEecCCCCCHHHH
Confidence 58999999999965
No 320
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.99 E-value=1.2 Score=46.60 Aligned_cols=20 Identities=45% Similarity=0.521 Sum_probs=16.0
Q ss_pred cCCCEEEEeCCCChHHHHHH
Q 006824 261 SGRDIIGIAKTGSGKTAAFV 280 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~~~ 280 (630)
.++-+++++|+|+|||.+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~a 224 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLV 224 (407)
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 45678999999999996533
No 321
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=92.94 E-value=1.3 Score=40.66 Aligned_cols=53 Identities=15% Similarity=0.282 Sum_probs=38.1
Q ss_pred cCceeEEEecchhhhhcCCc--HHHHHHHHhhcCCCCcEEEEeecccHHHHHHHH
Q 006824 370 MSRVTYLVLDEADRMFDLGF--EPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAR 422 (630)
Q Consensus 370 l~~i~~lVvDEah~~~~~~~--~~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~ 422 (630)
...+++||+||+-..+..++ ...+..+++.-+...-+|+.+-.+|+.+..++.
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD 147 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAAD 147 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCc
Confidence 45789999999998877664 456667777766666666666667777666554
No 322
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=92.93 E-value=0.19 Score=51.27 Aligned_cols=60 Identities=23% Similarity=0.193 Sum_probs=42.4
Q ss_pred CCCCCcHHHHHHHHHHHcCC-CEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHH
Q 006824 244 GYEKPTSIQCQALPIILSGR-DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAH 312 (630)
Q Consensus 244 ~~~~~~~~Q~~~i~~il~g~-d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~ 312 (630)
.|..+++-|...+..+..++ ++|+++.||||||.. +-++..... ..-+++.+=-|.+|--
T Consensus 154 ~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl--LNal~~~i~-------~~eRvItiEDtaELql 214 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL--LNALSGFID-------SDERVITIEDTAELQL 214 (355)
T ss_pred HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH--HHHHHhcCC-------CcccEEEEeehhhhcc
Confidence 45678899999998888776 999999999999963 333332211 1226788877777643
No 323
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=92.85 E-value=0.76 Score=52.79 Aligned_cols=40 Identities=23% Similarity=0.300 Sum_probs=24.6
Q ss_pred ceeEEEecchhhhhcCCcHHHHHHHHhhcCCCCcEEEEeecccHH
Q 006824 372 RVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRK 416 (630)
Q Consensus 372 ~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q~l~~SAT~~~~ 416 (630)
...++||||+|++.. .+...++..+. ..+++++++|-.+.
T Consensus 109 ~~~IL~IDEIh~Ln~----~qQdaLL~~lE-~g~IiLI~aTTenp 148 (725)
T PRK13341 109 KRTILFIDEVHRFNK----AQQDALLPWVE-NGTITLIGATTENP 148 (725)
T ss_pred CceEEEEeChhhCCH----HHHHHHHHHhc-CceEEEEEecCCCh
Confidence 456899999999642 23333444333 35677777775543
No 324
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=92.84 E-value=0.95 Score=51.47 Aligned_cols=35 Identities=26% Similarity=0.396 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHHHHhhcCCceEEE--EcCCcccCCCC
Q 006824 502 GDKDQASRMEILQKFKSGVYHVLI--ATDVAARGLDI 536 (630)
Q Consensus 502 g~~~~~~r~~~~~~F~~g~~~VLv--aT~~~~~Gldi 536 (630)
|..+...-..++..+.+|...-++ ..++..+|+|+
T Consensus 242 G~~d~~~i~~ll~aL~~~d~~~~l~~~~~l~~~g~~~ 278 (830)
T PRK07003 242 GALDQTYMVRLLDALAAGDGPEILAVADEMALRSLSF 278 (830)
T ss_pred CCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 666777777778887877765333 33556677765
No 325
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.83 E-value=0.59 Score=50.54 Aligned_cols=15 Identities=33% Similarity=0.317 Sum_probs=13.2
Q ss_pred EEEEeCCCChHHHHH
Q 006824 265 IIGIAKTGSGKTAAF 279 (630)
Q Consensus 265 ~l~~a~TGsGKT~~~ 279 (630)
+|++||.|+|||.++
T Consensus 43 ~Lf~GP~GtGKTTlA 57 (484)
T PRK14956 43 YIFFGPRGVGKTTIA 57 (484)
T ss_pred EEEECCCCCCHHHHH
Confidence 699999999999753
No 326
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=92.82 E-value=1 Score=45.71 Aligned_cols=18 Identities=22% Similarity=0.228 Sum_probs=15.4
Q ss_pred CCCEEEEeCCCChHHHHH
Q 006824 262 GRDIIGIAKTGSGKTAAF 279 (630)
Q Consensus 262 g~d~l~~a~TGsGKT~~~ 279 (630)
+.++++.||+|+|||.++
T Consensus 58 ~~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVA 75 (284)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 458999999999999654
No 327
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=92.78 E-value=0.87 Score=45.60 Aligned_cols=37 Identities=16% Similarity=0.067 Sum_probs=25.1
Q ss_pred cCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEc
Q 006824 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICA 305 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~ 305 (630)
.|.-+++.+++|+|||.. ++.++.+... ++.+++++.
T Consensus 35 ~gs~~lI~G~pGtGKT~l-~~qf~~~~a~-------~Ge~vlyis 71 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLM-VEQFAVTQAS-------RGNPVLFVT 71 (259)
T ss_pred CCcEEEEEcCCCCCHHHH-HHHHHHHHHh-------CCCcEEEEE
Confidence 446789999999999974 4544444322 255678876
No 328
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.76 E-value=1.1 Score=50.19 Aligned_cols=40 Identities=13% Similarity=0.206 Sum_probs=22.5
Q ss_pred cCceeEEEecchhhhhcCCcHHHHHHHHhhcCCCCcEEEEe
Q 006824 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (630)
Q Consensus 370 l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q~l~~S 410 (630)
..+++++||||+|+|....+ +.+...++.-.....+|+.|
T Consensus 122 ~gr~KViIIDEah~Ls~~Aa-NALLKTLEEPP~~v~FILaT 161 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAF-NAMLKTLEEPPEHVKFILAT 161 (700)
T ss_pred cCCceEEEEEChHhcCHHHH-HHHHHhhccCCCCceEEEEe
Confidence 34688999999999764332 22333333333344444443
No 329
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.75 E-value=1.1 Score=52.08 Aligned_cols=44 Identities=18% Similarity=0.206 Sum_probs=23.8
Q ss_pred CceeEEEecchhhhhcCCcHHHHHHHHhhcCCCCcEEEEeecccHH
Q 006824 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRK 416 (630)
Q Consensus 371 ~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q~l~~SAT~~~~ 416 (630)
.++.++||||||+|.... .+.+..++..-+....+|+ ..|-+..
T Consensus 118 gk~KViIIDEAh~LT~eA-qNALLKtLEEPP~~vrFIL-aTTe~~k 161 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSS-FNALLKTLEEPPEHVKFLL-ATTDPQK 161 (944)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhccCCCeEEEE-ECCCchh
Confidence 468899999999975322 2233334443333343444 3444333
No 330
>PRK06904 replicative DNA helicase; Validated
Probab=92.71 E-value=1.8 Score=47.26 Aligned_cols=116 Identities=16% Similarity=0.127 Sum_probs=57.5
Q ss_pred cCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECC-CChH
Q 006824 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGG-MSKL 339 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg-~~~~ 339 (630)
.|.=+++.|.+|+|||. |.+-+..++... .+..++|++. ---..|+...+..... ++....+..| .-..
T Consensus 220 ~G~LiiIaarPg~GKTa-falnia~~~a~~------~g~~Vl~fSl-EMs~~ql~~Rlla~~s--~v~~~~i~~g~~l~~ 289 (472)
T PRK06904 220 PSDLIIVAARPSMGKTT-FAMNLCENAAMA------SEKPVLVFSL-EMPAEQIMMRMLASLS--RVDQTKIRTGQNLDQ 289 (472)
T ss_pred CCcEEEEEeCCCCChHH-HHHHHHHHHHHh------cCCeEEEEec-cCCHHHHHHHHHHhhC--CCCHHHhccCCCCCH
Confidence 44567889999999997 444444443211 1444666653 2334444433332221 2222222222 2222
Q ss_pred HHHH-------HHHcCCcEEEe-----ChHHHHHHHHccccccCceeEEEecchhhhhc
Q 006824 340 DQFK-------ELKAGCEIVIA-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMFD 386 (630)
Q Consensus 340 ~~~~-------~l~~~~dIiv~-----Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~ 386 (630)
+.+. .+.....+.|. |+..+...+++-......+++||||=.+.|..
T Consensus 290 ~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~ 348 (472)
T PRK06904 290 QDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRA 348 (472)
T ss_pred HHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCC
Confidence 2222 23233446662 55555544432211123588999999887753
No 331
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=92.71 E-value=0.95 Score=45.28 Aligned_cols=138 Identities=17% Similarity=0.216 Sum_probs=69.7
Q ss_pred CCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcc---cHHHHHHHHHHHHHHhhhcCceEEEEECCCCh
Q 006824 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAP---TRELAHQIYLETKKFAKSHGIRVSAVYGGMSK 338 (630)
Q Consensus 262 g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~P---tr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~ 338 (630)
|.=+++.|.+|.|||. |++-+..++... .+..|++++. ..+++..+.... .++....+..|.-.
T Consensus 19 g~L~vi~a~pg~GKT~-~~l~ia~~~a~~------~~~~vly~SlEm~~~~l~~R~la~~------s~v~~~~i~~g~l~ 85 (259)
T PF03796_consen 19 GELTVIAARPGVGKTA-FALQIALNAALN------GGYPVLYFSLEMSEEELAARLLARL------SGVPYNKIRSGDLS 85 (259)
T ss_dssp T-EEEEEESTTSSHHH-HHHHHHHHHHHT------TSSEEEEEESSS-HHHHHHHHHHHH------HTSTHHHHHCCGCH
T ss_pred CcEEEEEecccCCchH-HHHHHHHHHHHh------cCCeEEEEcCCCCHHHHHHHHHHHh------hcchhhhhhccccC
Confidence 3457999999999997 455555554432 1466888875 233333332221 12222112223222
Q ss_pred HHHHHHHH------cCCcEEE-e----ChHHHHHHHHccccccCceeEEEecchhhhhcC----CcHHHHHHHHhhcC--
Q 006824 339 LDQFKELK------AGCEIVI-A----TPGRLIDMLKMKALTMSRVTYLVLDEADRMFDL----GFEPQIRSIVGQIR-- 401 (630)
Q Consensus 339 ~~~~~~l~------~~~dIiv-~----Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~----~~~~~v~~i~~~l~-- 401 (630)
...+..+. ....+.| . |+..+...+..-......+.+||||=.|.|... +....+..+...++
T Consensus 86 ~~e~~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~l 165 (259)
T PF03796_consen 86 DEEFERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKAL 165 (259)
T ss_dssp HHHHHHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHH
Confidence 33332221 2234443 3 444555555432222268899999999987653 23344444443332
Q ss_pred ---CCCcEEEEeec
Q 006824 402 ---PDRQTLLFSAT 412 (630)
Q Consensus 402 ---~~~q~l~~SAT 412 (630)
.+..++++|..
T Consensus 166 A~~~~i~vi~~sQl 179 (259)
T PF03796_consen 166 AKELNIPVIALSQL 179 (259)
T ss_dssp HHHHTSEEEEEEEB
T ss_pred HHHcCCeEEEcccc
Confidence 24455555554
No 332
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=92.61 E-value=1.1 Score=50.60 Aligned_cols=17 Identities=18% Similarity=0.270 Sum_probs=13.9
Q ss_pred CceeEEEecchhhhhcC
Q 006824 371 SRVTYLVLDEADRMFDL 387 (630)
Q Consensus 371 ~~i~~lVvDEah~~~~~ 387 (630)
.++.++||||+|+|...
T Consensus 118 g~~KV~IIDEah~Ls~~ 134 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRH 134 (647)
T ss_pred CCCEEEEEechHhCCHH
Confidence 46889999999997643
No 333
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=92.61 E-value=0.86 Score=47.76 Aligned_cols=31 Identities=19% Similarity=0.364 Sum_probs=21.8
Q ss_pred HHcCC---CEEEEeCCCChHHHHHHHHHHHHHhcC
Q 006824 259 ILSGR---DIIGIAKTGSGKTAAFVLPMIVHIMDQ 290 (630)
Q Consensus 259 il~g~---d~l~~a~TGsGKT~~~~l~~l~~~~~~ 290 (630)
+.+|+ -+++.||.|+|||.. ...+..+++..
T Consensus 39 ~~~grl~ha~L~~G~~G~GKttl-A~~lA~~Llc~ 72 (351)
T PRK09112 39 YREGKLHHALLFEGPEGIGKATL-AFHLANHILSH 72 (351)
T ss_pred HHcCCCCeeEeeECCCCCCHHHH-HHHHHHHHcCC
Confidence 44565 489999999999964 44555666553
No 334
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=92.57 E-value=1.1 Score=50.37 Aligned_cols=40 Identities=10% Similarity=0.154 Sum_probs=23.4
Q ss_pred cCceeEEEecchhhhhcCCcHHHHHHHHhhcCCCCcEEEEe
Q 006824 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (630)
Q Consensus 370 l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q~l~~S 410 (630)
....+++||||+|.|.... .+.+...++..++...+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~a-~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHHH-HHHHHHHHHhCCCCeEEEEEe
Confidence 4578899999999976432 223333344444444444443
No 335
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=92.53 E-value=0.92 Score=50.53 Aligned_cols=136 Identities=20% Similarity=0.229 Sum_probs=81.2
Q ss_pred HHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhc--CceEEEEECCC
Q 006824 259 ILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH--GIRVSAVYGGM 336 (630)
Q Consensus 259 il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~--~~~~~~~~gg~ 336 (630)
.+..+-.++..|==.|||.... +++..++.. -.|-++++++|.+..+..+++++..++... +-.+..+.| .
T Consensus 251 ~fkqk~tVflVPRR~GKTwivv-~iI~~ll~s-----~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e 323 (738)
T PHA03368 251 HFRQRATVFLVPRRHGKTWFLV-PLIALALAT-----FRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-E 323 (738)
T ss_pred HhhccceEEEecccCCchhhHH-HHHHHHHHh-----CCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-c
Confidence 3455667888888889997533 555544432 127779999999999999999998876532 111212222 1
Q ss_pred ChHHHHHHHHcC--CcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCcHHHHHHHHhhc-CCCCcEEEEeecc
Q 006824 337 SKLDQFKELKAG--CEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI-RPDRQTLLFSATM 413 (630)
Q Consensus 337 ~~~~~~~~l~~~--~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l-~~~~q~l~~SAT~ 413 (630)
.. ...+.+| +.|.++|- -..+...-..++++|||||+-+.+. .+..++-.+ ..+.++|++|.|.
T Consensus 324 ~I---~i~f~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~~----al~~ilp~l~~~n~k~I~ISS~N 390 (738)
T PHA03368 324 TI---SFSFPDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRPD----AVQTIMGFLNQTNCKIIFVSSTN 390 (738)
T ss_pred EE---EEEecCCCccEEEEEec------cCCCCccCCcccEEEEechhhCCHH----HHHHHHHHHhccCccEEEEecCC
Confidence 11 0011223 24555532 0122233347899999999987754 333333222 2378899999885
Q ss_pred c
Q 006824 414 P 414 (630)
Q Consensus 414 ~ 414 (630)
+
T Consensus 391 s 391 (738)
T PHA03368 391 T 391 (738)
T ss_pred C
Confidence 3
No 336
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=92.51 E-value=0.63 Score=45.86 Aligned_cols=102 Identities=13% Similarity=0.254 Sum_probs=70.3
Q ss_pred CCcEEEEeCCCCHHHHHHHHHHhhcCC----ceEEEEcCCcccCCCCCCccEEEEeCCCCCHHHHHHHhhhcc-cCCCCC
Q 006824 494 GFKAAALHGDKDQASRMEILQKFKSGV----YHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTG-RAGDKD 568 (630)
Q Consensus 494 ~~~~~~ihg~~~~~~r~~~~~~F~~g~----~~VLvaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~QriGR~g-R~g~~~ 568 (630)
++.+..++++.+... -.+.++. ..|+|+-+.++||+.++++.+..+...+.+.++++||.-=.| |.| -.
T Consensus 110 ~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwFGYR~g-Y~ 183 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWFGYRPG-YE 183 (239)
T ss_pred CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcccCCcc-cc
Confidence 577888887655432 2344443 789999999999999999999999999999999999754333 555 34
Q ss_pred eEEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006824 569 GTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLA 605 (630)
Q Consensus 569 g~~~~l~~~~d~~~~~~l~~~l~~~~~~vp~~L~~la 605 (630)
+.|.+++++.-......+.. ....+-.+|..++
T Consensus 184 dl~Ri~~~~~l~~~f~~i~~----~~e~lr~~i~~~~ 216 (239)
T PF10593_consen 184 DLCRIYMPEELYDWFRHIAE----AEEELREEIKEMA 216 (239)
T ss_pred cceEEecCHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 67888877655444444443 3344445555554
No 337
>PRK04195 replication factor C large subunit; Provisional
Probab=92.47 E-value=0.62 Score=51.29 Aligned_cols=17 Identities=24% Similarity=0.386 Sum_probs=14.9
Q ss_pred CCCEEEEeCCCChHHHH
Q 006824 262 GRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 262 g~d~l~~a~TGsGKT~~ 278 (630)
.+.+++.||+|+|||.+
T Consensus 39 ~~~lLL~GppG~GKTtl 55 (482)
T PRK04195 39 KKALLLYGPPGVGKTSL 55 (482)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 46899999999999964
No 338
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.45 E-value=1.6 Score=47.69 Aligned_cols=14 Identities=36% Similarity=0.432 Sum_probs=12.7
Q ss_pred EEEEeCCCChHHHH
Q 006824 265 IIGIAKTGSGKTAA 278 (630)
Q Consensus 265 ~l~~a~TGsGKT~~ 278 (630)
+|+.||+|+|||.+
T Consensus 39 ~Lf~GPpGtGKTTl 52 (472)
T PRK14962 39 YIFAGPRGTGKTTV 52 (472)
T ss_pred EEEECCCCCCHHHH
Confidence 69999999999965
No 339
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=92.45 E-value=1.7 Score=46.69 Aligned_cols=17 Identities=35% Similarity=0.395 Sum_probs=14.1
Q ss_pred CEEEEeCCCChHHHHHH
Q 006824 264 DIIGIAKTGSGKTAAFV 280 (630)
Q Consensus 264 d~l~~a~TGsGKT~~~~ 280 (630)
-+++++++|+|||.+..
T Consensus 101 vi~~vG~~GsGKTTtaa 117 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCG 117 (428)
T ss_pred EEEEECCCCCcHHHHHH
Confidence 47899999999997633
No 340
>PRK10867 signal recognition particle protein; Provisional
Probab=92.44 E-value=1.9 Score=46.36 Aligned_cols=17 Identities=29% Similarity=0.339 Sum_probs=13.9
Q ss_pred CEEEEeCCCChHHHHHH
Q 006824 264 DIIGIAKTGSGKTAAFV 280 (630)
Q Consensus 264 d~l~~a~TGsGKT~~~~ 280 (630)
-+++++++|+|||.+..
T Consensus 102 vI~~vG~~GsGKTTtaa 118 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAG 118 (433)
T ss_pred EEEEECCCCCcHHHHHH
Confidence 47899999999997533
No 341
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=92.42 E-value=0.75 Score=50.15 Aligned_cols=90 Identities=19% Similarity=0.198 Sum_probs=54.5
Q ss_pred CCCCHH-HHHHHHHcCCCCCc----HHHHHHHHHHH--cCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEE
Q 006824 230 CGFSTQ-LMHAISKQGYEKPT----SIQCQALPIIL--SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGV 302 (630)
Q Consensus 230 ~~l~~~-l~~~l~~~~~~~~~----~~Q~~~i~~il--~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vL 302 (630)
.++..+ |+..|.+.--.+++ -+|.+-=.+|. .+.-++++|..|||||.+++--+...++..+. ....+| +|
T Consensus 187 ~~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~-~l~~k~-vl 264 (747)
T COG3973 187 TGGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRG-PLQAKP-VL 264 (747)
T ss_pred CchHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhcccc-ccccCc-eE
Confidence 455555 44566655444443 23444434444 34568999999999998755444444444332 122233 99
Q ss_pred EEcccHHHHHHHHHHHHHH
Q 006824 303 ICAPTRELAHQIYLETKKF 321 (630)
Q Consensus 303 il~Ptr~La~Q~~~~~~~~ 321 (630)
|+.|.+-+..-+...+-.+
T Consensus 265 vl~PN~vFleYis~VLPeL 283 (747)
T COG3973 265 VLGPNRVFLEYISRVLPEL 283 (747)
T ss_pred EEcCcHHHHHHHHHhchhh
Confidence 9999999988776666665
No 342
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=92.41 E-value=1.8 Score=47.59 Aligned_cols=16 Identities=25% Similarity=0.266 Sum_probs=14.1
Q ss_pred CEEEEeCCCChHHHHH
Q 006824 264 DIIGIAKTGSGKTAAF 279 (630)
Q Consensus 264 d~l~~a~TGsGKT~~~ 279 (630)
.+|++||.|+|||.++
T Consensus 45 a~Lf~Gp~G~GKTT~A 60 (507)
T PRK06645 45 GYLLTGIRGVGKTTSA 60 (507)
T ss_pred eEEEECCCCCCHHHHH
Confidence 6899999999999653
No 343
>PRK14873 primosome assembly protein PriA; Provisional
Probab=92.40 E-value=0.3 Score=55.44 Aligned_cols=92 Identities=20% Similarity=0.201 Sum_probs=74.5
Q ss_pred cccHHHHHHhccCCCC-CCCEEEEccchhhHHHHHHHHHhC-C-CcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCc
Q 006824 454 AEKLPWLLEKLPGMID-DGDVLVFASKKTTVDEIESQLAQK-G-FKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVA 530 (630)
Q Consensus 454 ~~k~~~l~~~l~~~~~-~~~iLIF~~s~~~~~~l~~~L~~~-~-~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~ 530 (630)
+.|...++.++..... ++++||.+|....+..+...|+.. + ..+..+|++++..+|.+......+|+.+|+|.|..+
T Consensus 171 SGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSA 250 (665)
T PRK14873 171 EDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSA 250 (665)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEccee
Confidence 4677777777766544 457999999999999999999764 4 679999999999999999999999999999999654
Q ss_pred ccCCCCCCccEEEEeC
Q 006824 531 ARGLDIKSIKSVVNFD 546 (630)
Q Consensus 531 ~~Gldi~~v~~VI~~~ 546 (630)
- =.-+++...||..+
T Consensus 251 v-FaP~~~LgLIIvdE 265 (665)
T PRK14873 251 V-FAPVEDLGLVAIWD 265 (665)
T ss_pred E-EeccCCCCEEEEEc
Confidence 3 24566777777644
No 344
>PRK11823 DNA repair protein RadA; Provisional
Probab=92.38 E-value=1 Score=48.93 Aligned_cols=51 Identities=22% Similarity=0.300 Sum_probs=32.3
Q ss_pred CCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHH
Q 006824 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (630)
Q Consensus 262 g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 321 (630)
|.-+++.+++|+|||.. ++-+...+.. .+.+++|+.- .+...|+...+.++
T Consensus 80 Gs~~lI~G~pG~GKTtL-~lq~a~~~a~-------~g~~vlYvs~-Ees~~qi~~ra~rl 130 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTL-LLQVAARLAA-------AGGKVLYVSG-EESASQIKLRAERL 130 (446)
T ss_pred CEEEEEECCCCCCHHHH-HHHHHHHHHh-------cCCeEEEEEc-cccHHHHHHHHHHc
Confidence 45679999999999964 3444333322 2556888774 45556666555554
No 345
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=92.35 E-value=2.5 Score=44.45 Aligned_cols=109 Identities=14% Similarity=0.158 Sum_probs=60.9
Q ss_pred CCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHH
Q 006824 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ 341 (630)
Q Consensus 262 g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~ 341 (630)
.+.+.+.|+.|.|||. ++-++...+.. ..+.+ ++..+...+++..+.++. |+...-..
T Consensus 62 ~~GlYl~G~vG~GKT~--Lmd~f~~~lp~-----~~k~R----~HFh~Fm~~vh~~l~~~~-----------~~~~~l~~ 119 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTM--LMDLFYDSLPI-----KRKRR----VHFHEFMLDVHSRLHQLR-----------GQDDPLPQ 119 (362)
T ss_pred CceEEEECCCCCchhH--HHHHHHHhCCc-----ccccc----ccccHHHHHHHHHHHHHh-----------CCCccHHH
Confidence 4689999999999995 44444443221 11222 244566777777777663 11111111
Q ss_pred HHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCcHHHHHHHHhhc-CCCCcEEEEeecccHH
Q 006824 342 FKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI-RPDRQTLLFSATMPRK 416 (630)
Q Consensus 342 ~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l-~~~~q~l~~SAT~~~~ 416 (630)
+.+. ......+|++||.|- .+-+-.-.+..++..+ ....-+|+.|.+.|..
T Consensus 120 -----------------va~~------l~~~~~lLcfDEF~V-~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~ 171 (362)
T PF03969_consen 120 -----------------VADE------LAKESRLLCFDEFQV-TDIADAMILKRLFEALFKRGVVLVATSNRPPED 171 (362)
T ss_pred -----------------HHHH------HHhcCCEEEEeeeec-cchhHHHHHHHHHHHHHHCCCEEEecCCCChHH
Confidence 1111 134566899999995 3333344455555554 3455667777777755
No 346
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=92.22 E-value=1.2 Score=48.24 Aligned_cols=115 Identities=18% Similarity=0.167 Sum_probs=55.5
Q ss_pred cCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHH
Q 006824 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 340 (630)
.|.-+++.|++|+|||. |++-+..++.. ..+..++|+.. -.-..|+...+... ..++....+..|.-...
T Consensus 193 ~g~liviag~pg~GKT~-~al~ia~~~a~------~~g~~v~~fSl-Em~~~~l~~Rl~~~--~~~v~~~~~~~~~l~~~ 262 (421)
T TIGR03600 193 KGDLIVIGARPSMGKTT-LALNIAENVAL------REGKPVLFFSL-EMSAEQLGERLLAS--KSGINTGNIRTGRFNDS 262 (421)
T ss_pred CCceEEEEeCCCCCHHH-HHHHHHHHHHH------hCCCcEEEEEC-CCCHHHHHHHHHHH--HcCCCHHHHhcCCCCHH
Confidence 45678999999999996 45555444321 12445777762 12233333222221 12333222222222222
Q ss_pred HHHHH------HcCCcEEEe-----ChHHHHHHHHccccccCceeEEEecchhhhh
Q 006824 341 QFKEL------KAGCEIVIA-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (630)
Q Consensus 341 ~~~~l------~~~~dIiv~-----Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~ 385 (630)
.+..+ ..+..+.|. |+..+...+++-......+++||||=.+.|.
T Consensus 263 ~~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~ 318 (421)
T TIGR03600 263 DFNRLLNAVDRLSEKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMA 318 (421)
T ss_pred HHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccC
Confidence 22222 123455554 3344444333211112258899999988875
No 347
>PRK05973 replicative DNA helicase; Provisional
Probab=92.01 E-value=0.77 Score=45.10 Aligned_cols=66 Identities=20% Similarity=0.228 Sum_probs=39.5
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHH
Q 006824 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (630)
Q Consensus 246 ~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 321 (630)
..++|... ...-+..|.-+++.|++|+|||.. .+.++..... +|.+++|+.- -+-..|+...+..+
T Consensus 49 ~~~~p~~~-l~GGl~~Gsl~LIaG~PG~GKT~l-alqfa~~~a~-------~Ge~vlyfSl-Ees~~~i~~R~~s~ 114 (237)
T PRK05973 49 AATTPAEE-LFSQLKPGDLVLLGARPGHGKTLL-GLELAVEAMK-------SGRTGVFFTL-EYTEQDVRDRLRAL 114 (237)
T ss_pred cCCCCHHH-hcCCCCCCCEEEEEeCCCCCHHHH-HHHHHHHHHh-------cCCeEEEEEE-eCCHHHHHHHHHHc
Confidence 34566333 334445667889999999999974 4444444432 2556777753 23345666666555
No 348
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.00 E-value=0.74 Score=50.71 Aligned_cols=27 Identities=19% Similarity=0.274 Sum_probs=18.0
Q ss_pred cCceeEEEecchhhhhcCCcHHHHHHHHhhc
Q 006824 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQI 400 (630)
Q Consensus 370 l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l 400 (630)
.....+|||||+|.|.. ..+..++..+
T Consensus 114 ~~~~kVVIIDEad~ls~----~a~naLLk~L 140 (504)
T PRK14963 114 RGGRKVYILDEAHMMSK----SAFNALLKTL 140 (504)
T ss_pred cCCCeEEEEECccccCH----HHHHHHHHHH
Confidence 45778999999998643 3344444444
No 349
>PRK08506 replicative DNA helicase; Provisional
Probab=91.96 E-value=0.94 Score=49.60 Aligned_cols=114 Identities=18% Similarity=0.167 Sum_probs=57.1
Q ss_pred cCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHH
Q 006824 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 340 (630)
.|.-+++.|.||+|||. |++-+..++..+ +..++|+.. -.-..|+...+..... ++....+..|.-...
T Consensus 191 ~G~LivIaarpg~GKT~-fal~ia~~~~~~-------g~~V~~fSl-EMs~~ql~~Rlla~~s--~v~~~~i~~~~l~~~ 259 (472)
T PRK08506 191 KGDLIIIAARPSMGKTT-LCLNMALKALNQ-------DKGVAFFSL-EMPAEQLMLRMLSAKT--SIPLQNLRTGDLDDD 259 (472)
T ss_pred CCceEEEEcCCCCChHH-HHHHHHHHHHhc-------CCcEEEEeC-cCCHHHHHHHHHHHhc--CCCHHHHhcCCCCHH
Confidence 34567889999999996 455555555322 445676653 2334444433322211 222211222222222
Q ss_pred HHHHH------HcCCcEEEe-----ChHHHHHHHHccccccCceeEEEecchhhhh
Q 006824 341 QFKEL------KAGCEIVIA-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (630)
Q Consensus 341 ~~~~l------~~~~dIiv~-----Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~ 385 (630)
.+..+ ..+..+.|. |+..+...+++-......+++||||=.+.|.
T Consensus 260 e~~~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~ 315 (472)
T PRK08506 260 EWERLSDACDELSKKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMS 315 (472)
T ss_pred HHHHHHHHHHHHHcCCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhcc
Confidence 22221 123445553 4555554444321112358899999998775
No 350
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=91.88 E-value=0.45 Score=44.66 Aligned_cols=49 Identities=18% Similarity=0.313 Sum_probs=27.6
Q ss_pred HHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHH
Q 006824 257 PIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQI 314 (630)
Q Consensus 257 ~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~ 314 (630)
.++-+++++++.|++|+|||..+ ..+...+... |..+++ +++.+|+..+
T Consensus 42 ~~~~~~~~l~l~G~~G~GKThLa-~ai~~~~~~~-------g~~v~f-~~~~~L~~~l 90 (178)
T PF01695_consen 42 EFIENGENLILYGPPGTGKTHLA-VAIANEAIRK-------GYSVLF-ITASDLLDEL 90 (178)
T ss_dssp -S-SC--EEEEEESTTSSHHHHH-HHHHHHHHHT-------T--EEE-EEHHHHHHHH
T ss_pred CCcccCeEEEEEhhHhHHHHHHH-HHHHHHhccC-------CcceeE-eecCceeccc
Confidence 33457789999999999999653 3333444332 455555 4555666554
No 351
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=91.77 E-value=2.2 Score=39.66 Aligned_cols=53 Identities=13% Similarity=0.276 Sum_probs=37.4
Q ss_pred cCceeEEEecchhhhhcCCc--HHHHHHHHhhcCCCCcEEEEeecccHHHHHHHH
Q 006824 370 MSRVTYLVLDEADRMFDLGF--EPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAR 422 (630)
Q Consensus 370 l~~i~~lVvDEah~~~~~~~--~~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~ 422 (630)
-..+++||+||+-..++.++ ...+..++..-++...+|+..-.+|+.+..++.
T Consensus 95 ~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD 149 (173)
T TIGR00708 95 DPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELAD 149 (173)
T ss_pred cCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCc
Confidence 35789999999998888774 345667777655555666655667777666654
No 352
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=91.66 E-value=1.2 Score=46.04 Aligned_cols=40 Identities=15% Similarity=0.111 Sum_probs=25.7
Q ss_pred cHHHHHHHHHHH----cCC---CEEEEeCCCChHHHHHHHHHHHHHhc
Q 006824 249 TSIQCQALPIIL----SGR---DIIGIAKTGSGKTAAFVLPMIVHIMD 289 (630)
Q Consensus 249 ~~~Q~~~i~~il----~g~---d~l~~a~TGsGKT~~~~l~~l~~~~~ 289 (630)
+|+|...+..+. +|+ -.++.||.|.||+..+ ..+...++.
T Consensus 4 yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA-~~~A~~llC 50 (325)
T PRK06871 4 YPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLI-RALAQWLMC 50 (325)
T ss_pred CcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHH-HHHHHHHcC
Confidence 566666665554 544 5679999999999753 333344443
No 353
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=91.63 E-value=0.72 Score=47.20 Aligned_cols=66 Identities=29% Similarity=0.346 Sum_probs=40.0
Q ss_pred HHHHHcCCCCCcHHHHHHHHH-HHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHH
Q 006824 238 HAISKQGYEKPTSIQCQALPI-ILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELA 311 (630)
Q Consensus 238 ~~l~~~~~~~~~~~Q~~~i~~-il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La 311 (630)
+.+.+.|. +++.|...+.. +..+++++++|+||||||.. +-.++..+...+ ...+++++=.+.|+.
T Consensus 109 ~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~al~~~i~~~~-----~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 109 DDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTL-ANALLAEIAKND-----PTDRVVIIEDTRELQ 175 (299)
T ss_pred HHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHhhccC-----CCceEEEECCchhhc
Confidence 33444443 45556666654 44567999999999999964 334444442211 134577777777764
No 354
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=91.63 E-value=1.2 Score=46.87 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=17.8
Q ss_pred CCEEEEeCCCChHHHHHHHHHHHHH
Q 006824 263 RDIIGIAKTGSGKTAAFVLPMIVHI 287 (630)
Q Consensus 263 ~d~l~~a~TGsGKT~~~~l~~l~~~ 287 (630)
..+++.||+|+|||.+ +-.++.++
T Consensus 41 ~~i~I~G~~GtGKT~l-~~~~~~~l 64 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAV-TKYVMKEL 64 (365)
T ss_pred CcEEEECCCCCCHHHH-HHHHHHHH
Confidence 5799999999999964 33444444
No 355
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=91.61 E-value=2.4 Score=40.03 Aligned_cols=147 Identities=14% Similarity=0.068 Sum_probs=71.9
Q ss_pred HcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChH
Q 006824 260 LSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKL 339 (630)
Q Consensus 260 l~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~ 339 (630)
+....+++..++|.|||.+++--++..+ +.|.+|+|+-=.+--. -..+...+....++... ..|....
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~--------g~G~~V~ivQFlKg~~--~~GE~~~l~~l~~v~~~--~~g~~~~ 87 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAV--------GHGKKVGVVQFIKGAW--STGERNLLEFGGGVEFH--VMGTGFT 87 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHH--------HCCCeEEEEEEecCCC--ccCHHHHHhcCCCcEEE--ECCCCCc
Confidence 3556889999999999988766666654 3366677763221110 00111111111123222 2222110
Q ss_pred HHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCc--HHHHHHHHhhcCCCCcEEEEeecccHHH
Q 006824 340 DQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGF--EPQIRSIVGQIRPDRQTLLFSATMPRKV 417 (630)
Q Consensus 340 ~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~--~~~v~~i~~~l~~~~q~l~~SAT~~~~~ 417 (630)
-. ....+--+.......... +..+.-..+++||+||+-..++.++ ...+..++..-++..-+|+.--.+|+++
T Consensus 88 ~~----~~~~~e~~~~~~~~~~~a-~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~L 162 (191)
T PRK05986 88 WE----TQDRERDIAAAREGWEEA-KRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPREL 162 (191)
T ss_pred cc----CCCcHHHHHHHHHHHHHH-HHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHH
Confidence 00 000000000000111111 1122235789999999999888874 4456667766444444554444567776
Q ss_pred HHHHHH
Q 006824 418 EKLARE 423 (630)
Q Consensus 418 ~~l~~~ 423 (630)
..++..
T Consensus 163 ie~ADl 168 (191)
T PRK05986 163 IEAADL 168 (191)
T ss_pred HHhCch
Confidence 665543
No 356
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.57 E-value=1.4 Score=47.48 Aligned_cols=58 Identities=19% Similarity=0.323 Sum_probs=33.9
Q ss_pred cCceeEEEecchhhhhc--------CC-cHHHHHHHHhhcCC-----CCcEEEEeecccHHHHHHHHHHcCCCeEEE
Q 006824 370 MSRVTYLVLDEADRMFD--------LG-FEPQIRSIVGQIRP-----DRQTLLFSATMPRKVEKLAREILSDPVRVT 432 (630)
Q Consensus 370 l~~i~~lVvDEah~~~~--------~~-~~~~v~~i~~~l~~-----~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~ 432 (630)
-+.+.+||+||.|.+.. .| .-..++.++..+.. +.-+|+| |.- .+++...+-.|-++.
T Consensus 322 ~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGM--TNR---~DlIDEALLRPGRlE 393 (744)
T KOG0741|consen 322 NSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGM--TNR---KDLIDEALLRPGRLE 393 (744)
T ss_pred cCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEec--cCc---hhhHHHHhcCCCceE
Confidence 46789999999998753 12 23445666665532 3334444 433 346666666665443
No 357
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=91.53 E-value=1.7 Score=48.55 Aligned_cols=17 Identities=29% Similarity=0.284 Sum_probs=13.9
Q ss_pred CEEEEeCCCChHHHHHH
Q 006824 264 DIIGIAKTGSGKTAAFV 280 (630)
Q Consensus 264 d~l~~a~TGsGKT~~~~ 280 (630)
-.|++||.|+|||.++-
T Consensus 40 ayLf~Gp~GtGKTt~Ak 56 (559)
T PRK05563 40 AYLFSGPRGTGKTSAAK 56 (559)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46889999999997543
No 358
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=91.50 E-value=1.3 Score=46.79 Aligned_cols=51 Identities=22% Similarity=0.296 Sum_probs=31.0
Q ss_pred CCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHH
Q 006824 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (630)
Q Consensus 262 g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 321 (630)
|.-+++.+++|+|||.. ++-+...+.. .+.+++|+.-. +...|+...+.++
T Consensus 82 GslvLI~G~pG~GKStL-llq~a~~~a~-------~g~~VlYvs~E-Es~~qi~~Ra~rl 132 (372)
T cd01121 82 GSVILIGGDPGIGKSTL-LLQVAARLAK-------RGGKVLYVSGE-ESPEQIKLRADRL 132 (372)
T ss_pred CeEEEEEeCCCCCHHHH-HHHHHHHHHh-------cCCeEEEEECC-cCHHHHHHHHHHc
Confidence 46689999999999964 3333333322 24568887653 3445665544444
No 359
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=91.48 E-value=1 Score=47.92 Aligned_cols=45 Identities=24% Similarity=0.399 Sum_probs=25.9
Q ss_pred CceeEEEecchhhhhcCCcHHHHHHHHhhcCCCCcEEEEeecccHHH
Q 006824 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKV 417 (630)
Q Consensus 371 ~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q~l~~SAT~~~~~ 417 (630)
....++||||+|+|.... .+.+...++.-++. -++++++|-+..+
T Consensus 116 ~~~kViiIDead~m~~~a-anaLLk~LEep~~~-~~fIL~a~~~~~l 160 (394)
T PRK07940 116 GRWRIVVIEDADRLTERA-ANALLKAVEEPPPR-TVWLLCAPSPEDV 160 (394)
T ss_pred CCcEEEEEechhhcCHHH-HHHHHHHhhcCCCC-CeEEEEECChHHC
Confidence 567899999999986432 23344444443334 4455555544443
No 360
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=91.45 E-value=0.27 Score=55.84 Aligned_cols=92 Identities=22% Similarity=0.346 Sum_probs=75.5
Q ss_pred CccccHHHHHHhccCCCCCC-CEEEEccchhhHHHHHHHHHhC-CCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCC
Q 006824 452 SDAEKLPWLLEKLPGMIDDG-DVLVFASKKTTVDEIESQLAQK-GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDV 529 (630)
Q Consensus 452 ~~~~k~~~l~~~l~~~~~~~-~iLIF~~s~~~~~~l~~~L~~~-~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~ 529 (630)
..+.|...+++++...+..| .+||.+|.+.....+...|+.. |.++..+|+++++.+|.....+..+|+.+|+|.|..
T Consensus 226 TGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRS 305 (730)
T COG1198 226 TGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRS 305 (730)
T ss_pred CCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEech
Confidence 35678888888887776555 7999999999988888888654 899999999999999999999999999999999964
Q ss_pred cccCCCCCCccEEEE
Q 006824 530 AARGLDIKSIKSVVN 544 (630)
Q Consensus 530 ~~~Gldi~~v~~VI~ 544 (630)
+- =.-++++..||.
T Consensus 306 Al-F~Pf~~LGLIIv 319 (730)
T COG1198 306 AL-FLPFKNLGLIIV 319 (730)
T ss_pred hh-cCchhhccEEEE
Confidence 32 245666777774
No 361
>PRK04328 hypothetical protein; Provisional
Probab=91.39 E-value=1.6 Score=43.37 Aligned_cols=52 Identities=19% Similarity=0.240 Sum_probs=31.9
Q ss_pred cCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHH
Q 006824 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 321 (630)
.|.-+++.+++|+|||.. ++.++...+. ++.+++++. +.+-..++.+.+..+
T Consensus 22 ~gs~ili~G~pGsGKT~l-~~~fl~~~~~-------~ge~~lyis-~ee~~~~i~~~~~~~ 73 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIF-SQQFLWNGLQ-------MGEPGVYVA-LEEHPVQVRRNMRQF 73 (249)
T ss_pred CCcEEEEEcCCCCCHHHH-HHHHHHHHHh-------cCCcEEEEE-eeCCHHHHHHHHHHc
Confidence 356789999999999964 3443433222 255577765 444555555555554
No 362
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=91.37 E-value=0.52 Score=45.52 Aligned_cols=16 Identities=25% Similarity=0.328 Sum_probs=13.5
Q ss_pred CCEEEEeCCCChHHHH
Q 006824 263 RDIIGIAKTGSGKTAA 278 (630)
Q Consensus 263 ~d~l~~a~TGsGKT~~ 278 (630)
.++|+.||+|.|||..
T Consensus 51 ~h~lf~GPPG~GKTTL 66 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTL 66 (233)
T ss_dssp -EEEEESSTTSSHHHH
T ss_pred ceEEEECCCccchhHH
Confidence 3799999999999954
No 363
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=91.32 E-value=0.92 Score=49.58 Aligned_cols=53 Identities=17% Similarity=0.297 Sum_probs=32.7
Q ss_pred CCCCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHH
Q 006824 223 PVKTFEDCGFSTQLMHAISKQ---GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 223 p~~~~~~~~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~ 278 (630)
|-.+|++.|--.++...|... .+..|--++.-++. .-..+|+++|+|+|||+.
T Consensus 506 PdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~---~PsGvLL~GPPGCGKTLl 561 (802)
T KOG0733|consen 506 PDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGID---APSGVLLCGPPGCGKTLL 561 (802)
T ss_pred CCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCC---CCCceEEeCCCCccHHHH
Confidence 347899988777666655432 22333333332221 135799999999999975
No 364
>PRK10689 transcription-repair coupling factor; Provisional
Probab=91.25 E-value=0.59 Score=56.52 Aligned_cols=98 Identities=11% Similarity=0.131 Sum_probs=72.2
Q ss_pred EEEcCCccccHHHHHHh-ccCCCCCCCEEEEccchhhHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHhhcCCc
Q 006824 447 VHVIPSDAEKLPWLLEK-LPGMIDDGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVY 521 (630)
Q Consensus 447 ~~~~~~~~~k~~~l~~~-l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~r~~~~~~F~~g~~ 521 (630)
...-+....|....+.. +.......+++|.||+..-+..++..|.+. ++.+..++|..+..++..++..+.+|..
T Consensus 625 Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~ 704 (1147)
T PRK10689 625 LVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKI 704 (1147)
T ss_pred EEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCC
Confidence 34444555665432211 111124568999999999999888887653 5678899999999999999999999999
Q ss_pred eEEEEcC-CcccCCCCCCccEEEE
Q 006824 522 HVLIATD-VAARGLDIKSIKSVVN 544 (630)
Q Consensus 522 ~VLvaT~-~~~~Gldi~~v~~VI~ 544 (630)
.|+|+|. .+...+.+..+.+||.
T Consensus 705 dIVVgTp~lL~~~v~~~~L~lLVI 728 (1147)
T PRK10689 705 DILIGTHKLLQSDVKWKDLGLLIV 728 (1147)
T ss_pred CEEEECHHHHhCCCCHhhCCEEEE
Confidence 9999995 4455677788888875
No 365
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=91.24 E-value=1.5 Score=45.75 Aligned_cols=41 Identities=10% Similarity=0.004 Sum_probs=27.6
Q ss_pred CcHHHHHHHHHHHcC-----CCEEEEeCCCChHHHHHHHHHHHHHhc
Q 006824 248 PTSIQCQALPIILSG-----RDIIGIAKTGSGKTAAFVLPMIVHIMD 289 (630)
Q Consensus 248 ~~~~Q~~~i~~il~g-----~d~l~~a~TGsGKT~~~~l~~l~~~~~ 289 (630)
++|+|...+..+.+. .-.++.||.|.||+..+ ..+...++.
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA-~~~A~~LlC 47 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFA-QHLAQGLLC 47 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHH-HHHHHHHcC
Confidence 367888888776643 25789999999999754 333344443
No 366
>PRK08840 replicative DNA helicase; Provisional
Probab=91.22 E-value=2.8 Score=45.70 Aligned_cols=115 Identities=15% Similarity=0.119 Sum_probs=54.8
Q ss_pred cCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHH
Q 006824 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 340 (630)
.|.=+++.|.+|.|||.. .+-+..++... .+..++|+..- --..|+...+.... .++...-+..|.-..+
T Consensus 216 ~g~LiviaarPg~GKTaf-alnia~~~a~~------~~~~v~~fSlE-Ms~~ql~~Rlla~~--s~v~~~~i~~~~l~~~ 285 (464)
T PRK08840 216 GSDLIIVAARPSMGKTTF-AMNLCENAAMD------QDKPVLIFSLE-MPAEQLMMRMLASL--SRVDQTKIRTGQLDDE 285 (464)
T ss_pred CCceEEEEeCCCCchHHH-HHHHHHHHHHh------CCCeEEEEecc-CCHHHHHHHHHHhh--CCCCHHHHhcCCCCHH
Confidence 456678899999999974 44443343211 14446666432 22334433332221 1222222222222223
Q ss_pred HHHH-------HHcCCcEEEe-----ChHHHHHHHHccccccCceeEEEecchhhhh
Q 006824 341 QFKE-------LKAGCEIVIA-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (630)
Q Consensus 341 ~~~~-------l~~~~dIiv~-----Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~ 385 (630)
.+.. +.....+.|. |+..+...+++-......+++||||=.|.|.
T Consensus 286 e~~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~ 342 (464)
T PRK08840 286 DWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMR 342 (464)
T ss_pred HHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcC
Confidence 3322 2233455553 3444443332211111258899999999874
No 367
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.22 E-value=1.7 Score=45.13 Aligned_cols=22 Identities=27% Similarity=0.620 Sum_probs=18.0
Q ss_pred HHHHcC-----CCEEEEeCCCChHHHH
Q 006824 257 PIILSG-----RDIIGIAKTGSGKTAA 278 (630)
Q Consensus 257 ~~il~g-----~d~l~~a~TGsGKT~~ 278 (630)
|.+++| +.+|+.+|+|+|||+.
T Consensus 235 Pe~F~GirrPWkgvLm~GPPGTGKTlL 261 (491)
T KOG0738|consen 235 PEFFKGIRRPWKGVLMVGPPGTGKTLL 261 (491)
T ss_pred HHHHhhcccccceeeeeCCCCCcHHHH
Confidence 445566 7899999999999964
No 368
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=91.15 E-value=4.2 Score=42.19 Aligned_cols=142 Identities=17% Similarity=0.145 Sum_probs=74.2
Q ss_pred CcHHHHHHHHHHHcCCC------EEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHH
Q 006824 248 PTSIQCQALPIILSGRD------IIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (630)
Q Consensus 248 ~~~~Q~~~i~~il~g~d------~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 321 (630)
.+..|...+..++..++ +++.|.+|+|||.+ +.-++.+. +-..+++.+- =|.-+..-+.++
T Consensus 10 ~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~-~r~~l~~~----------n~~~vw~n~~--ecft~~~lle~I 76 (438)
T KOG2543|consen 10 CRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYL-VRQLLRKL----------NLENVWLNCV--ECFTYAILLEKI 76 (438)
T ss_pred chHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHH-HHHHHhhc----------CCcceeeehH--HhccHHHHHHHH
Confidence 45678888888886654 38899999999954 22333332 1124666652 133344444444
Q ss_pred hhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHc--cccccCceeEEEecchhhhhcCC--cHHHHHHHH
Q 006824 322 AKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM--KALTMSRVTYLVLDEADRMFDLG--FEPQIRSIV 397 (630)
Q Consensus 322 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~--~~~~l~~i~~lVvDEah~~~~~~--~~~~v~~i~ 397 (630)
+...+ .+-..|........ +-..+...+.+ ........-++|+|-|+.+.+++ ..+.+..+-
T Consensus 77 L~~~~---~~d~dg~~~~~~~e-----------n~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~ 142 (438)
T KOG2543|consen 77 LNKSQ---LADKDGDKVEGDAE-----------NFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLY 142 (438)
T ss_pred HHHhc---cCCCchhhhhhHHH-----------HHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHH
Confidence 43222 00011111111100 11112222222 11122346689999999999886 223333444
Q ss_pred hhcCCCCcEEEEeecccHH
Q 006824 398 GQIRPDRQTLLFSATMPRK 416 (630)
Q Consensus 398 ~~l~~~~q~l~~SAT~~~~ 416 (630)
..++...-.+.+|+++++.
T Consensus 143 el~~~~~i~iils~~~~e~ 161 (438)
T KOG2543|consen 143 ELLNEPTIVIILSAPSCEK 161 (438)
T ss_pred HHhCCCceEEEEeccccHH
Confidence 4555556678889998765
No 369
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=91.15 E-value=2.4 Score=47.97 Aligned_cols=40 Identities=8% Similarity=0.081 Sum_probs=22.8
Q ss_pred cCceeEEEecchhhhhcCCcHHHHHHHHhhcCCCCcEEEEe
Q 006824 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (630)
Q Consensus 370 l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q~l~~S 410 (630)
.....++||||+|.|.... ...+...+...+....+|+.|
T Consensus 117 ~gk~KVIIIDEad~Ls~~A-~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 117 AGKYKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hCCcEEEEEECccccCHHH-HHHHHHHHHhCCCCcEEEEEe
Confidence 3567899999999865322 223344444434444444443
No 370
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.13 E-value=1.9 Score=48.39 Aligned_cols=17 Identities=24% Similarity=0.171 Sum_probs=14.3
Q ss_pred CEEEEeCCCChHHHHHH
Q 006824 264 DIIGIAKTGSGKTAAFV 280 (630)
Q Consensus 264 d~l~~a~TGsGKT~~~~ 280 (630)
.+|+.+|.|+|||.++.
T Consensus 40 a~Lf~GPpG~GKTtiAr 56 (624)
T PRK14959 40 AYLFSGTRGVGKTTIAR 56 (624)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 57899999999997644
No 371
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.05 E-value=1.2 Score=49.40 Aligned_cols=40 Identities=10% Similarity=0.099 Sum_probs=22.8
Q ss_pred cCceeEEEecchhhhhcCCcHHHHHHHHhhcCCCCcEEEEe
Q 006824 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (630)
Q Consensus 370 l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q~l~~S 410 (630)
..+..++||||+|+|.... .+.+...+...+....+|+.|
T Consensus 117 ~~~~kVvIIDEad~ls~~a-~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCCHHH-HHHHHHHHhCCCCCEEEEEEe
Confidence 3567899999999976432 223333344433344444443
No 372
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.95 E-value=1.6 Score=48.20 Aligned_cols=39 Identities=13% Similarity=0.205 Sum_probs=23.4
Q ss_pred CceeEEEecchhhhhcCCcHHHHHHHHhhcCCCCcEEEEe
Q 006824 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (630)
Q Consensus 371 ~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q~l~~S 410 (630)
.+++++||||+|+|....+ +.+...+...++...+|+.|
T Consensus 118 ~~~kV~iIDE~~~ls~~a~-naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSF-NALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHHH-HHHHHHHhccCCCeEEEEEE
Confidence 4678999999999764332 23344455444444444433
No 373
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.95 E-value=1.8 Score=48.38 Aligned_cols=43 Identities=23% Similarity=0.244 Sum_probs=24.3
Q ss_pred cCceeEEEecchhhhhcCCcHHHHHHHHhhcCCCCcEEEEeeccc
Q 006824 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMP 414 (630)
Q Consensus 370 l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q~l~~SAT~~ 414 (630)
.....++||||+|.|.... .+.+...+...+....+|+.+ |-+
T Consensus 116 ~~~~KVvIIDEah~Lt~~A-~NALLK~LEEpp~~~~fIL~t-te~ 158 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTAG-FNALLKIVEEPPEHLIFIFAT-TEP 158 (584)
T ss_pred cCCceEEEEECCCcCCHHH-HHHHHHHHhcCCCCeEEEEEe-CCh
Confidence 3578899999999976433 223334444433344344333 443
No 374
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=90.90 E-value=1.4 Score=45.72 Aligned_cols=33 Identities=24% Similarity=0.089 Sum_probs=24.6
Q ss_pred CcHHHHHHHHHHHcC--C---CEEEEeCCCChHHHHHH
Q 006824 248 PTSIQCQALPIILSG--R---DIIGIAKTGSGKTAAFV 280 (630)
Q Consensus 248 ~~~~Q~~~i~~il~g--~---d~l~~a~TGsGKT~~~~ 280 (630)
++|+|...|..+.+. | -+++.||.|.|||..+.
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~ 39 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFAR 39 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHH
Confidence 367888888777633 2 57899999999996533
No 375
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=90.87 E-value=7.3 Score=36.18 Aligned_cols=53 Identities=15% Similarity=0.265 Sum_probs=31.8
Q ss_pred cCceeEEEecchhhhhcCCcH--HHHHHHHhhcCCCCcEEEEeecccHHHHHHHH
Q 006824 370 MSRVTYLVLDEADRMFDLGFE--PQIRSIVGQIRPDRQTLLFSATMPRKVEKLAR 422 (630)
Q Consensus 370 l~~i~~lVvDEah~~~~~~~~--~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~ 422 (630)
-..+++||+||+-..++.++. ..+..++..-++..-+|+.--.+|+.+...+.
T Consensus 94 ~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~AD 148 (172)
T PF02572_consen 94 SGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAAD 148 (172)
T ss_dssp -TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-S
T ss_pred CCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhCC
Confidence 357999999999998888754 45666777655555555555556666665553
No 376
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=90.78 E-value=2.3 Score=44.63 Aligned_cols=145 Identities=18% Similarity=0.181 Sum_probs=63.5
Q ss_pred EEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHH----HHHHHHHhhhcCceEEEE-ECCCChHH
Q 006824 266 IGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQI----YLETKKFAKSHGIRVSAV-YGGMSKLD 340 (630)
Q Consensus 266 l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~----~~~~~~~~~~~~~~~~~~-~gg~~~~~ 340 (630)
++.++.|+|||.+.++.++.+++..+. +..++++ ||...+... ...+..+... .+..... ......
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~-----~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-- 71 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPP-----GRRVIIA-STYRQARDIFGRFWKGIIELLPS-WFEIKFNEWNDRKI-- 71 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS-------EEEEE-ESSHHHHHHHHHHHHHHHHTS-T-TTS--EEEE-SSEE--
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCC-----CcEEEEe-cCHHHHHHHHHHhHHHHHHHHHH-hcCcccccCCCCcE--
Confidence 577899999998888777877765531 2345555 665555443 2233333332 1222111 000000
Q ss_pred HHHHHHcCCcEEEeChHHH--HHHHHccccccCceeEEEecchhhhhcCCcHHHHHHHHhhcCCCCcEEEEeecc--cHH
Q 006824 341 QFKELKAGCEIVIATPGRL--IDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATM--PRK 416 (630)
Q Consensus 341 ~~~~l~~~~dIiv~Tp~~L--~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q~l~~SAT~--~~~ 416 (630)
.+.+|+.|.+.+...- ..-+. -..+.++++||+-.+.+..+...+........... .+++|.|+ ...
T Consensus 72 ---~~~nG~~i~~~~~~~~~~~~~~~-----G~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~p~~~~~~ 142 (384)
T PF03237_consen 72 ---ILPNGSRIQFRGADSPDSGDNIR-----GFEYDLIIIDEAAKVPDDAFSELIRRLRATWGGSI-RMYISTPPNPGGW 142 (384)
T ss_dssp ---EETTS-EEEEES-----SHHHHH-----TS--SEEEEESGGGSTTHHHHHHHHHHHHCSTT---EEEEEE---SSSH
T ss_pred ---EecCceEEEEecccccccccccc-----ccccceeeeeecccCchHHHHHHHHhhhhcccCcc-eEEeecCCCCCCc
Confidence 0134566666664321 11111 25688999999888654433444433333322222 22555543 233
Q ss_pred HHHHHHHHcCCC
Q 006824 417 VEKLAREILSDP 428 (630)
Q Consensus 417 ~~~l~~~~~~~~ 428 (630)
+..+......+.
T Consensus 143 ~~~~~~~~~~~~ 154 (384)
T PF03237_consen 143 FYEIFQRNLDDD 154 (384)
T ss_dssp HHHHHHHHHCTS
T ss_pred eeeeeehhhcCC
Confidence 445555555544
No 377
>PRK09087 hypothetical protein; Validated
Probab=90.70 E-value=0.68 Score=45.32 Aligned_cols=40 Identities=15% Similarity=0.228 Sum_probs=24.3
Q ss_pred EEEecchhhhhcCCcHHHHHHHHhhcCC-CCcEEEEeecccHH
Q 006824 375 YLVLDEADRMFDLGFEPQIRSIVGQIRP-DRQTLLFSATMPRK 416 (630)
Q Consensus 375 ~lVvDEah~~~~~~~~~~v~~i~~~l~~-~~q~l~~SAT~~~~ 416 (630)
+|+||++|.+. . ....+..+++.+.. ..++|+.|.+.|+.
T Consensus 90 ~l~iDDi~~~~-~-~~~~lf~l~n~~~~~g~~ilits~~~p~~ 130 (226)
T PRK09087 90 PVLIEDIDAGG-F-DETGLFHLINSVRQAGTSLLMTSRLWPSS 130 (226)
T ss_pred eEEEECCCCCC-C-CHHHHHHHHHHHHhCCCeEEEECCCChHH
Confidence 79999999763 2 24556667766654 44545444445544
No 378
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=90.66 E-value=1.4 Score=45.24 Aligned_cols=16 Identities=31% Similarity=0.412 Sum_probs=14.0
Q ss_pred CCEEEEeCCCChHHHH
Q 006824 263 RDIIGIAKTGSGKTAA 278 (630)
Q Consensus 263 ~d~l~~a~TGsGKT~~ 278 (630)
..+|+++|.|+|||..
T Consensus 163 pSmIlWGppG~GKTtl 178 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTL 178 (554)
T ss_pred CceEEecCCCCchHHH
Confidence 3799999999999964
No 379
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=90.65 E-value=0.21 Score=46.77 Aligned_cols=46 Identities=28% Similarity=0.301 Sum_probs=30.9
Q ss_pred HHHHHcCCcEEEeChHHHHHHHHccccc--cCceeEEEecchhhhhcC
Q 006824 342 FKELKAGCEIVIATPGRLIDMLKMKALT--MSRVTYLVLDEADRMFDL 387 (630)
Q Consensus 342 ~~~l~~~~dIiv~Tp~~L~~~l~~~~~~--l~~i~~lVvDEah~~~~~ 387 (630)
.+.....++|||+++..|.+-....... ...-.+|||||||.+.+.
T Consensus 113 ~r~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~~ 160 (174)
T PF06733_consen 113 ARELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLEDA 160 (174)
T ss_dssp HHHCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGGG
T ss_pred HHHhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHHH
Confidence 3455556999999999888654433322 234578999999997653
No 380
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=90.63 E-value=4.3 Score=37.63 Aligned_cols=54 Identities=19% Similarity=0.337 Sum_probs=29.7
Q ss_pred CceeEEEecchhhhh-cCCcHHHHHHHHhhcCCCCcEEEEeecccHHHHHHHHHH
Q 006824 371 SRVTYLVLDEADRMF-DLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREI 424 (630)
Q Consensus 371 ~~i~~lVvDEah~~~-~~~~~~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~~~ 424 (630)
...+++|+|....+. +......+..+.....+..-++.+++.........+..+
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~ 135 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAF 135 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHH
Confidence 356678888877642 112233444444444456666677776555544444444
No 381
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.55 E-value=1.7 Score=48.81 Aligned_cols=43 Identities=19% Similarity=0.274 Sum_probs=24.1
Q ss_pred cCceeEEEecchhhhhcCCcHHHHHHHHhhcCCCCcEEEEeeccc
Q 006824 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMP 414 (630)
Q Consensus 370 l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q~l~~SAT~~ 414 (630)
.....++||||+|+|.... .+.+...++..++...+| |.+|-+
T Consensus 117 ~~~~KVvIIdev~~Lt~~a-~naLLk~LEepp~~~~fI-l~t~~~ 159 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTNA-FNALLKTLEEPPPHVKFI-FATTEP 159 (576)
T ss_pred cCCceEEEEEChhhCCHHH-HHHHHHHHHcCCCCeEEE-EEeCCh
Confidence 3578899999999876432 233444444433333333 444533
No 382
>PRK08006 replicative DNA helicase; Provisional
Probab=90.53 E-value=3.9 Score=44.70 Aligned_cols=115 Identities=15% Similarity=0.127 Sum_probs=56.6
Q ss_pred cCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHH
Q 006824 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 340 (630)
.|.=+++.|.+|+|||. |.+-+..++... .+..|+|+.. -.-..|+...+.... .++....+..|.-..+
T Consensus 223 ~G~LiiIaarPgmGKTa-falnia~~~a~~------~g~~V~~fSl-EM~~~ql~~Rlla~~--~~v~~~~i~~~~l~~~ 292 (471)
T PRK08006 223 PSDLIIVAARPSMGKTT-FAMNLCENAAML------QDKPVLIFSL-EMPGEQIMMRMLASL--SRVDQTRIRTGQLDDE 292 (471)
T ss_pred CCcEEEEEeCCCCCHHH-HHHHHHHHHHHh------cCCeEEEEec-cCCHHHHHHHHHHHh--cCCCHHHhhcCCCCHH
Confidence 44567889999999996 455444444211 1444666643 222334433332221 1232222222222223
Q ss_pred HHHH-------HHcCCcEEEe-----ChHHHHHHHHccccccCceeEEEecchhhhh
Q 006824 341 QFKE-------LKAGCEIVIA-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (630)
Q Consensus 341 ~~~~-------l~~~~dIiv~-----Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~ 385 (630)
.+.. +.....+.|. |+..+....++-......+++||||=.|.|.
T Consensus 293 e~~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 349 (471)
T PRK08006 293 DWARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMR 349 (471)
T ss_pred HHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHcc
Confidence 3322 2233555553 4545544443211112358999999999864
No 383
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=90.53 E-value=2.7 Score=48.66 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=14.9
Q ss_pred CCCEEEEeCCCChHHHH
Q 006824 262 GRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 262 g~d~l~~a~TGsGKT~~ 278 (630)
..++++.||+|+|||..
T Consensus 207 ~~n~LLvGppGvGKT~l 223 (758)
T PRK11034 207 KNNPLLVGESGVGKTAI 223 (758)
T ss_pred CCCeEEECCCCCCHHHH
Confidence 46899999999999965
No 384
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=90.51 E-value=0.91 Score=50.42 Aligned_cols=87 Identities=20% Similarity=0.302 Sum_probs=70.9
Q ss_pred HHHHHhccCCCCCCCEEEEccch----hhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCCc-cc
Q 006824 458 PWLLEKLPGMIDDGDVLVFASKK----TTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVA-AR 532 (630)
Q Consensus 458 ~~l~~~l~~~~~~~~iLIF~~s~----~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~-~~ 532 (630)
..++..+.....+.++.+-+||- .++..+.++|...|+.+..+.|.+....|.+++++..+|.++++|.|-++ ..
T Consensus 299 VA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd 378 (677)
T COG1200 299 VALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQD 378 (677)
T ss_pred HHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhc
Confidence 34444444444556899999994 55666777777789999999999999999999999999999999999665 58
Q ss_pred CCCCCCccEEEE
Q 006824 533 GLDIKSIKSVVN 544 (630)
Q Consensus 533 Gldi~~v~~VI~ 544 (630)
.+++.++..||.
T Consensus 379 ~V~F~~LgLVIi 390 (677)
T COG1200 379 KVEFHNLGLVII 390 (677)
T ss_pred ceeecceeEEEE
Confidence 899998888885
No 385
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=90.41 E-value=0.45 Score=49.96 Aligned_cols=49 Identities=18% Similarity=0.280 Sum_probs=30.5
Q ss_pred CCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHh
Q 006824 221 PRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIM 288 (630)
Q Consensus 221 p~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~ 288 (630)
|..+.+++++++++.+.+.+ ...+.-++++||||||||.. +-.++.++.
T Consensus 111 ~~~~~~l~~l~~~~~~~~~~------------------~~~~glilI~GpTGSGKTTt-L~aLl~~i~ 159 (358)
T TIGR02524 111 PAEPPKLSKLDLPAAIIDAI------------------APQEGIVFITGATGSGKSTL-LAAIIRELA 159 (358)
T ss_pred CCCCCCHHHcCCCHHHHHHH------------------hccCCEEEEECCCCCCHHHH-HHHHHHHHh
Confidence 44456677777765433221 12456799999999999964 344445543
No 386
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.38 E-value=6.2 Score=42.73 Aligned_cols=137 Identities=20% Similarity=0.286 Sum_probs=75.8
Q ss_pred CCCCHHHHHHHHHcCCCCCcHHHHHHHHH----HHcC--------CCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccC
Q 006824 230 CGFSTQLMHAISKQGYEKPTSIQCQALPI----ILSG--------RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEE 297 (630)
Q Consensus 230 ~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~----il~g--------~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~ 297 (630)
+|.+++-++.+...|.....|.=.+.+.. +.+- ..+++.+|.|||||..+.-.++ ...
T Consensus 494 FG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~----------~S~ 563 (744)
T KOG0741|consen 494 FGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIAL----------SSD 563 (744)
T ss_pred cCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHh----------hcC
Confidence 57888888888777776555444444432 1111 3689999999999954322221 234
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEE
Q 006824 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLV 377 (630)
Q Consensus 298 ~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lV 377 (630)
-|.+=|+.|..-. | .+.......+.+ .+. ...-+.+++||
T Consensus 564 FPFvKiiSpe~mi---------------G---------~sEsaKc~~i~k--------------~F~--DAYkS~lsiiv 603 (744)
T KOG0741|consen 564 FPFVKIISPEDMI---------------G---------LSESAKCAHIKK--------------IFE--DAYKSPLSIIV 603 (744)
T ss_pred CCeEEEeChHHcc---------------C---------ccHHHHHHHHHH--------------HHH--HhhcCcceEEE
Confidence 6777788773211 1 112222111110 011 11235688999
Q ss_pred ecchhhhhcCC-----cHHHHHHH----HhhcCC-CCcEEEEeecccHH
Q 006824 378 LDEADRMFDLG-----FEPQIRSI----VGQIRP-DRQTLLFSATMPRK 416 (630)
Q Consensus 378 vDEah~~~~~~-----~~~~v~~i----~~~l~~-~~q~l~~SAT~~~~ 416 (630)
||+..++++|. |.+.+... ++..+| .++.+.|..|-...
T Consensus 604 vDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~ 652 (744)
T KOG0741|consen 604 VDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRRE 652 (744)
T ss_pred EcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHH
Confidence 99999999874 44443322 233333 45666676665444
No 387
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=90.26 E-value=2.9 Score=43.53 Aligned_cols=41 Identities=17% Similarity=0.150 Sum_probs=27.0
Q ss_pred CcHHHHHHHHHHH----cCC---CEEEEeCCCChHHHHHHHHHHHHHhc
Q 006824 248 PTSIQCQALPIIL----SGR---DIIGIAKTGSGKTAAFVLPMIVHIMD 289 (630)
Q Consensus 248 ~~~~Q~~~i~~il----~g~---d~l~~a~TGsGKT~~~~l~~l~~~~~ 289 (630)
++|+|...|..+. +|| -.++.||.|.||+..+ ..+...++.
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA-~~~A~~LlC 50 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALI-YALSRWLMC 50 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHH-HHHHHHHcC
Confidence 4567777776654 444 5789999999999653 334444443
No 388
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=90.19 E-value=4.6 Score=41.71 Aligned_cols=54 Identities=20% Similarity=0.350 Sum_probs=29.5
Q ss_pred CceeEEEecchhhhhcC-CcHHHHHHHHhhc------CCCCcEEEEeecccHHHHHHHHHH
Q 006824 371 SRVTYLVLDEADRMFDL-GFEPQIRSIVGQI------RPDRQTLLFSATMPRKVEKLAREI 424 (630)
Q Consensus 371 ~~i~~lVvDEah~~~~~-~~~~~v~~i~~~l------~~~~q~l~~SAT~~~~~~~l~~~~ 424 (630)
..+++||||=+-++... .....+..+...+ .+..-++.++||...+....+..+
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f 255 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAF 255 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHH
Confidence 46788888887764321 1223344443322 244557888898765433344444
No 389
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.14 E-value=2.8 Score=46.51 Aligned_cols=40 Identities=10% Similarity=0.063 Sum_probs=23.2
Q ss_pred cCceeEEEecchhhhhcCCcHHHHHHHHhhcCCCCcEEEEe
Q 006824 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (630)
Q Consensus 370 l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q~l~~S 410 (630)
.....++||||+|+|.... .+.+...+...+....+|+.|
T Consensus 117 ~g~~kViIIDEa~~ls~~a-~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQS-FNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhccHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 3467899999999976432 233444444433344444433
No 390
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=90.14 E-value=1.3 Score=45.59 Aligned_cols=43 Identities=26% Similarity=0.249 Sum_probs=28.9
Q ss_pred cCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHH
Q 006824 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELA 311 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La 311 (630)
.|+-+.+.+|+|+|||.. +++++...... +.+++++-.-..+-
T Consensus 54 ~G~iteI~G~~GsGKTtL-aL~~~~~~~~~-------g~~v~yId~E~~~~ 96 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTL-ALHAIAEAQKA-------GGTAAFIDAEHALD 96 (321)
T ss_pred CCeEEEEECCCCCCHHHH-HHHHHHHHHHc-------CCcEEEEcccchhH
Confidence 346788999999999974 56666665432 55677775544333
No 391
>PHA00729 NTP-binding motif containing protein
Probab=90.11 E-value=2.9 Score=40.65 Aligned_cols=75 Identities=13% Similarity=0.177 Sum_probs=38.3
Q ss_pred cEEEeChHHHHHHHHccccccCceeEEEecchhhhhcC-CcH----HHHHHHHhhcCCCCcEEEEeecccHHHHHHHHHH
Q 006824 350 EIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDL-GFE----PQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREI 424 (630)
Q Consensus 350 dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~-~~~----~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~~~ 424 (630)
..++.+...|...+........+++++|||++=.-+.. .|. .....+...++...+++.+...-+..+...++.-
T Consensus 60 ~~~fid~~~Ll~~L~~a~~~~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~R 139 (226)
T PHA00729 60 NSYFFELPDALEKIQDAIDNDYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLREK 139 (226)
T ss_pred cEEEEEHHHHHHHHHHHHhcCCCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHhC
Confidence 34555555555555432112235678999994321111 111 1122334444445567777777777776666653
No 392
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=90.09 E-value=0.54 Score=49.52 Aligned_cols=50 Identities=18% Similarity=0.296 Sum_probs=32.3
Q ss_pred CCCCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhc
Q 006824 221 PRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMD 289 (630)
Q Consensus 221 p~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~ 289 (630)
|..+.++.++++++.+++.+. ..+..+++++|||||||.. +-.++.++..
T Consensus 126 ~~~~~~l~~lgl~~~~~~~l~------------------~~~GlilI~G~TGSGKTT~-l~al~~~i~~ 175 (372)
T TIGR02525 126 PSDIPDLKQMGIEPDLFNSLL------------------PAAGLGLICGETGSGKSTL-AASIYQHCGE 175 (372)
T ss_pred CCcCCCHHHcCCCHHHHHHHH------------------hcCCEEEEECCCCCCHHHH-HHHHHHHHHh
Confidence 333446777787776544331 1344689999999999964 4556666643
No 393
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=90.02 E-value=1.1 Score=50.96 Aligned_cols=42 Identities=21% Similarity=0.320 Sum_probs=36.9
Q ss_pred eeEEEecchhhhhcCCcHHHHHHHHhhcCCCCcEEEEeeccc
Q 006824 373 VTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMP 414 (630)
Q Consensus 373 i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q~l~~SAT~~ 414 (630)
.=++|+|..|++.+...-..++.++++.+++.+.++.|-+-|
T Consensus 130 pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 130 PLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred ceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 358999999999988888889999999999999999887755
No 394
>PRK13764 ATPase; Provisional
Probab=89.95 E-value=0.73 Score=51.45 Aligned_cols=26 Identities=15% Similarity=0.231 Sum_probs=19.4
Q ss_pred cCCCEEEEeCCCChHHHHHHHHHHHHH
Q 006824 261 SGRDIIGIAKTGSGKTAAFVLPMIVHI 287 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~~~l~~l~~~ 287 (630)
.+++++++++||||||.. +-.++.++
T Consensus 256 ~~~~ILIsG~TGSGKTTl-l~AL~~~i 281 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTF-AQALAEFY 281 (602)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHH
Confidence 467899999999999963 44444454
No 395
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=89.92 E-value=4.6 Score=39.62 Aligned_cols=51 Identities=10% Similarity=0.131 Sum_probs=30.3
Q ss_pred CCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHH
Q 006824 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (630)
Q Consensus 262 g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 321 (630)
|.-+++.+++|+|||.. +..++..... ++.+++++.-- +-..++...+..+
T Consensus 25 g~~~~i~G~~GsGKt~l-~~~~~~~~~~-------~g~~~~y~~~e-~~~~~~~~~~~~~ 75 (234)
T PRK06067 25 PSLILIEGDHGTGKSVL-SQQFVYGALK-------QGKKVYVITTE-NTSKSYLKQMESV 75 (234)
T ss_pred CcEEEEECCCCCChHHH-HHHHHHHHHh-------CCCEEEEEEcC-CCHHHHHHHHHHC
Confidence 46789999999999964 3333333222 25667776643 3334555555554
No 396
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=89.92 E-value=0.61 Score=47.92 Aligned_cols=16 Identities=25% Similarity=0.351 Sum_probs=14.1
Q ss_pred CCEEEEeCCCChHHHH
Q 006824 263 RDIIGIAKTGSGKTAA 278 (630)
Q Consensus 263 ~d~l~~a~TGsGKT~~ 278 (630)
.++++.||+|+|||..
T Consensus 31 ~~~ll~Gp~G~GKT~l 46 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTL 46 (305)
T ss_pred CeEEEECCCCCCHHHH
Confidence 5699999999999954
No 397
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=89.85 E-value=0.32 Score=53.40 Aligned_cols=49 Identities=31% Similarity=0.407 Sum_probs=36.3
Q ss_pred CCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHH
Q 006824 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (630)
Q Consensus 263 ~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 321 (630)
.+++++|+||||||..+++|.+... ..-++|.=|--+|+......+++.
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~----------~~s~iV~D~KgEl~~~t~~~r~~~ 93 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNY----------PGSMIVTDPKGELYEKTAGYRKKR 93 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhc----------cCCEEEEECCCcHHHHHHHHHHHC
Confidence 5799999999999999999987442 113677778888877655544444
No 398
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.84 E-value=2.2 Score=48.13 Aligned_cols=17 Identities=35% Similarity=0.221 Sum_probs=14.2
Q ss_pred CEEEEeCCCChHHHHHH
Q 006824 264 DIIGIAKTGSGKTAAFV 280 (630)
Q Consensus 264 d~l~~a~TGsGKT~~~~ 280 (630)
..|++||.|+|||.++.
T Consensus 40 a~Lf~Gp~GvGKttlA~ 56 (620)
T PRK14954 40 GYIFSGLRGVGKTTAAR 56 (620)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 48899999999997643
No 399
>PRK07004 replicative DNA helicase; Provisional
Probab=89.84 E-value=1.8 Score=47.20 Aligned_cols=115 Identities=17% Similarity=0.153 Sum_probs=55.1
Q ss_pred cCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHH
Q 006824 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 340 (630)
.|.=+++.|.+|+|||. |++-+..++.. ..+..++++.. -.-..|+...+-.. ..++....+..|.-..+
T Consensus 212 ~g~liviaarpg~GKT~-~al~ia~~~a~------~~~~~v~~fSl-EM~~~ql~~R~la~--~~~v~~~~i~~g~l~~~ 281 (460)
T PRK07004 212 GGELIIVAGRPSMGKTA-FSMNIGEYVAV------EYGLPVAVFSM-EMPGTQLAMRMLGS--VGRLDQHRMRTGRLTDE 281 (460)
T ss_pred CCceEEEEeCCCCCccH-HHHHHHHHHHH------HcCCeEEEEeC-CCCHHHHHHHHHHh--hcCCCHHHHhcCCCCHH
Confidence 45667889999999996 44544444321 12444666642 22223333222211 11222221212222223
Q ss_pred HHHHH------HcCCcEEEe-----ChHHHHHHHHccccccCceeEEEecchhhhh
Q 006824 341 QFKEL------KAGCEIVIA-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (630)
Q Consensus 341 ~~~~l------~~~~dIiv~-----Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~ 385 (630)
.+..+ ..+..+.|. |+..+....++-......+++||||=.+.|.
T Consensus 282 e~~~~~~a~~~l~~~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~ 337 (460)
T PRK07004 282 DWPKLTHAVQKMSEAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMS 337 (460)
T ss_pred HHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhcc
Confidence 33221 123556663 4445544333221112357899999999875
No 400
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=89.72 E-value=5.6 Score=40.67 Aligned_cols=131 Identities=19% Similarity=0.288 Sum_probs=72.9
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcc--cHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHH
Q 006824 264 DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAP--TRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ 341 (630)
Q Consensus 264 d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~P--tr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~ 341 (630)
-+++++-.|+|||.+ +.=|++.+.+ +|.++++.+- .|+-|.. .+..|....|+.++.-..|.....-
T Consensus 141 Vil~vGVNG~GKTTT--IaKLA~~l~~------~g~~VllaA~DTFRAaAiE---QL~~w~er~gv~vI~~~~G~DpAaV 209 (340)
T COG0552 141 VILFVGVNGVGKTTT--IAKLAKYLKQ------QGKSVLLAAGDTFRAAAIE---QLEVWGERLGVPVISGKEGADPAAV 209 (340)
T ss_pred EEEEEecCCCchHhH--HHHHHHHHHH------CCCeEEEEecchHHHHHHH---HHHHHHHHhCCeEEccCCCCCcHHH
Confidence 368899999999975 4445555443 3666776654 4555543 3455555457666542222222111
Q ss_pred HHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcC-CcHHHHHHHHhhcCCCC------cEEEEeeccc
Q 006824 342 FKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDL-GFEPQIRSIVGQIRPDR------QTLLFSATMP 414 (630)
Q Consensus 342 ~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~-~~~~~v~~i~~~l~~~~------q~l~~SAT~~ 414 (630)
..+.++. -.-+.+++|++|=|=||-+. +....+..|.+-+.+.. -++.+=||..
T Consensus 210 -----------------afDAi~~--Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttG 270 (340)
T COG0552 210 -----------------AFDAIQA--AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTG 270 (340)
T ss_pred -----------------HHHHHHH--HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccC
Confidence 1122221 12356788888888886543 24455666666555443 3444478887
Q ss_pred HHHHHHHHHH
Q 006824 415 RKVEKLAREI 424 (630)
Q Consensus 415 ~~~~~l~~~~ 424 (630)
.+...-++.|
T Consensus 271 qnal~QAk~F 280 (340)
T COG0552 271 QNALSQAKIF 280 (340)
T ss_pred hhHHHHHHHH
Confidence 6655555544
No 401
>PRK09165 replicative DNA helicase; Provisional
Probab=89.68 E-value=2.3 Score=46.96 Aligned_cols=119 Identities=16% Similarity=0.087 Sum_probs=58.1
Q ss_pred CCCEEEEeCCCChHHHHHHHHHHHHHhcCCcc--------cccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEE
Q 006824 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPEL--------QKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVY 333 (630)
Q Consensus 262 g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~--------~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~ 333 (630)
|.=+++.|+||+|||.. .+-+..++...... ....+..++|+.. -.-..|+...+..... ++....+.
T Consensus 217 g~livIaarpg~GKT~~-al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSl-EMs~~ql~~R~la~~s--~v~~~~i~ 292 (497)
T PRK09165 217 SDLIILAGRPSMGKTAL-ATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSL-EMSAEQLATRILSEQS--EISSSKIR 292 (497)
T ss_pred CceEEEEeCCCCChHHH-HHHHHHHHHHhhcccccccccccccCCCeEEEEeC-cCCHHHHHHHHHHHhc--CCCHHHHh
Confidence 35578899999999964 44444443221000 0112566777753 3334455444333321 33222222
Q ss_pred CCCChHHHHHHHH------cCCcEEEe-----ChHHHHHHHHccccccCceeEEEecchhhhh
Q 006824 334 GGMSKLDQFKELK------AGCEIVIA-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (630)
Q Consensus 334 gg~~~~~~~~~l~------~~~dIiv~-----Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~ 385 (630)
.|.-....+..+. ....+.|. |+..+...+++-.. -..+++||||=.+.|.
T Consensus 293 ~~~l~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l~~-~~~~~lvvIDyLqli~ 354 (497)
T PRK09165 293 RGKISEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLKR-QHGLDLLVVDYLQLIR 354 (497)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhcc
Confidence 2322223332222 12445553 44555544432211 2358899999999875
No 402
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=89.63 E-value=4.9 Score=46.70 Aligned_cols=16 Identities=31% Similarity=0.474 Sum_probs=14.5
Q ss_pred CCEEEEeCCCChHHHH
Q 006824 263 RDIIGIAKTGSGKTAA 278 (630)
Q Consensus 263 ~d~l~~a~TGsGKT~~ 278 (630)
.++++.||+|+|||..
T Consensus 204 ~n~lL~G~pG~GKT~l 219 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAI 219 (731)
T ss_pred CceEEECCCCCCHHHH
Confidence 5899999999999965
No 403
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=89.57 E-value=2.5 Score=49.24 Aligned_cols=25 Identities=16% Similarity=0.263 Sum_probs=18.4
Q ss_pred cCCCEEEEeCCCChHHHHHHHHHHHHH
Q 006824 261 SGRDIIGIAKTGSGKTAAFVLPMIVHI 287 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~~~l~~l~~~ 287 (630)
.++.+++.||+|+|||.. +-++.+.
T Consensus 211 ~~~giLL~GppGtGKT~l--araia~~ 235 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLL--AKAVANE 235 (733)
T ss_pred CCceEEEECCCCCChHHH--HHHHHHH
Confidence 457899999999999954 4444443
No 404
>COG1485 Predicted ATPase [General function prediction only]
Probab=89.50 E-value=6.8 Score=40.37 Aligned_cols=108 Identities=12% Similarity=0.135 Sum_probs=65.2
Q ss_pred CCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCC-hHHH
Q 006824 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMS-KLDQ 341 (630)
Q Consensus 263 ~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~-~~~~ 341 (630)
+.+-+.|+.|.||| +++-++.+.+... . -.-++...-+..+++.+..+. |... ....
T Consensus 66 ~GlYl~GgVGrGKT--~LMD~Fy~~lp~~---~------k~R~HFh~FM~~vH~~l~~l~-----------g~~dpl~~i 123 (367)
T COG1485 66 RGLYLWGGVGRGKT--MLMDLFYESLPGE---R------KRRLHFHRFMARVHQRLHTLQ-----------GQTDPLPPI 123 (367)
T ss_pred ceEEEECCCCccHH--HHHHHHHhhCCcc---c------cccccHHHHHHHHHHHHHHHc-----------CCCCccHHH
Confidence 68899999999999 5566666654321 1 123567778888888887774 1111 1111
Q ss_pred HHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCcHHHHHHHHhhc-CCCCcEEEEeecccHHH
Q 006824 342 FKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI-RPDRQTLLFSATMPRKV 417 (630)
Q Consensus 342 ~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l-~~~~q~l~~SAT~~~~~ 417 (630)
.. . ......+|++||.|- .|-+-.-.+..+++.+ .....+++.|.|.|.++
T Consensus 124 A~-----------------~-------~~~~~~vLCfDEF~V-tDI~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~~L 175 (367)
T COG1485 124 AD-----------------E-------LAAETRVLCFDEFEV-TDIADAMILGRLLEALFARGVVLVATSNTAPDNL 175 (367)
T ss_pred HH-----------------H-------HHhcCCEEEeeeeee-cChHHHHHHHHHHHHHHHCCcEEEEeCCCChHHh
Confidence 11 1 134677899999984 3333233344444433 45777888888888763
No 405
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=89.45 E-value=3.4 Score=44.79 Aligned_cols=114 Identities=18% Similarity=0.137 Sum_probs=56.2
Q ss_pred cCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHH
Q 006824 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 340 (630)
.|.-+++.|++|+|||. |++-+..++... .+..+++++. -.-..|+...+..... ++....+..|.-...
T Consensus 194 ~G~l~vi~g~pg~GKT~-~~l~~a~~~a~~------~g~~vl~~Sl-Em~~~~i~~R~~~~~~--~v~~~~~~~g~l~~~ 263 (434)
T TIGR00665 194 PSDLIILAARPSMGKTA-FALNIAENAAIK------EGKPVAFFSL-EMSAEQLAMRMLSSES--RVDSQKLRTGKLSDE 263 (434)
T ss_pred CCeEEEEEeCCCCChHH-HHHHHHHHHHHh------CCCeEEEEeC-cCCHHHHHHHHHHHhc--CCCHHHhccCCCCHH
Confidence 35567999999999996 455555554321 2445677653 2233344333333221 232222222222222
Q ss_pred HHHHH------HcCCcEEEe-----ChHHHHHHHHccccccCceeEEEecchhhhh
Q 006824 341 QFKEL------KAGCEIVIA-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (630)
Q Consensus 341 ~~~~l------~~~~dIiv~-----Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~ 385 (630)
++..+ ..+..+.|. |+..+...+..-.. -..+++||||=.+.|.
T Consensus 264 ~~~~~~~a~~~l~~~~l~i~d~~~~~~~~i~~~i~~~~~-~~~~~~vvID~l~~i~ 318 (434)
T TIGR00665 264 DWEKLTSAAGKLSEAPLYIDDTPGLTITELRAKARRLKR-EHGLGLIVIDYLQLMS 318 (434)
T ss_pred HHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhcC
Confidence 22211 122445552 44455544432211 1247899999998874
No 406
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=89.43 E-value=1.1 Score=47.68 Aligned_cols=141 Identities=17% Similarity=0.122 Sum_probs=78.4
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHH
Q 006824 236 LMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIY 315 (630)
Q Consensus 236 l~~~l~~~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~ 315 (630)
++..|.. .+..+...|..+.-..-.|.- .+.+=.|||||.+ +++-..++..+ +..-+++|.+-|+.|+.++.
T Consensus 152 ~l~~ies-kIanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~-La~Kaa~lh~k-----nPd~~I~~Tfftk~L~s~~r 223 (660)
T COG3972 152 LLDTIES-KIANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTEL-LAHKAAELHSK-----NPDSRIAFTFFTKILASTMR 223 (660)
T ss_pred HHHHHHH-HHhcccchhheeeeecCCchh-hhhcccCCCchhH-HHHHHHHHhcC-----CCCceEEEEeehHHHHHHHH
Confidence 3444432 344566677777644445544 5677899999976 33334444432 22456899999999999999
Q ss_pred HHHHHHhhhc--------CceEEEEECCCChHH---HHHHHHcCCcEEEeChHHHHHHHH----ccccccCceeEEEecc
Q 006824 316 LETKKFAKSH--------GIRVSAVYGGMSKLD---QFKELKAGCEIVIATPGRLIDMLK----MKALTMSRVTYLVLDE 380 (630)
Q Consensus 316 ~~~~~~~~~~--------~~~~~~~~gg~~~~~---~~~~l~~~~dIiv~Tp~~L~~~l~----~~~~~l~~i~~lVvDE 380 (630)
..+.+|+-.. .+.+..-.||.+... ..+....-..+-++--+.-.+... ....+..-+++|.|||
T Consensus 224 ~lv~~F~f~~~e~~pdW~~~l~~h~wgG~t~~g~y~~~~~~~~~~~~~fsg~g~~F~~aC~eli~~~~~~~~yD~ilIDE 303 (660)
T COG3972 224 TLVPEFFFMRVEKQPDWGTKLFCHNWGGLTKEGFYGMYRYICHYYEIPFSGFGNGFDAACKELIADINNKKAYDYILIDE 303 (660)
T ss_pred HHHHHHHHHHhhcCCCccceEEEeccCCCCCCcchHHHHHHhcccccccCCCCcchHHHHHHHHHhhhccccccEEEecc
Confidence 9999987542 122333345544332 222222222333321111111111 1122356689999999
Q ss_pred hhhh
Q 006824 381 ADRM 384 (630)
Q Consensus 381 ah~~ 384 (630)
++-.
T Consensus 304 ~QDF 307 (660)
T COG3972 304 SQDF 307 (660)
T ss_pred cccC
Confidence 9873
No 407
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=89.42 E-value=3.1 Score=43.91 Aligned_cols=26 Identities=15% Similarity=0.157 Sum_probs=18.8
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHHhcC
Q 006824 264 DIIGIAKTGSGKTAAFVLPMIVHIMDQ 290 (630)
Q Consensus 264 d~l~~a~TGsGKT~~~~l~~l~~~~~~ 290 (630)
-.|+.||.|+||+.. ...+...++..
T Consensus 43 A~Lf~Gp~G~GK~~l-A~~~A~~Llc~ 68 (365)
T PRK07471 43 AWLIGGPQGIGKATL-AYRMARFLLAT 68 (365)
T ss_pred eEEEECCCCCCHHHH-HHHHHHHHhCC
Confidence 489999999999965 44455555543
No 408
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.40 E-value=2.2 Score=45.72 Aligned_cols=17 Identities=18% Similarity=0.208 Sum_probs=14.1
Q ss_pred cCceeEEEecchhhhhc
Q 006824 370 MSRVTYLVLDEADRMFD 386 (630)
Q Consensus 370 l~~i~~lVvDEah~~~~ 386 (630)
.....++||||+|.|..
T Consensus 125 ~~~~kvvIIdea~~l~~ 141 (397)
T PRK14955 125 KGRYRVYIIDEVHMLSI 141 (397)
T ss_pred cCCeEEEEEeChhhCCH
Confidence 45778999999999764
No 409
>PRK05748 replicative DNA helicase; Provisional
Probab=89.33 E-value=2.3 Score=46.30 Aligned_cols=115 Identities=17% Similarity=0.133 Sum_probs=56.8
Q ss_pred cCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHH
Q 006824 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 340 (630)
.|.-+++.|+||+|||. |.+.++.++... .+..++++.. -.-..|+...+..... ++....+..|.-...
T Consensus 202 ~G~livIaarpg~GKT~-~al~ia~~~a~~------~g~~v~~fSl-Ems~~~l~~R~l~~~~--~v~~~~i~~~~l~~~ 271 (448)
T PRK05748 202 PNDLIIVAARPSVGKTA-FALNIAQNVATK------TDKNVAIFSL-EMGAESLVMRMLCAEG--NIDAQRLRTGQLTDD 271 (448)
T ss_pred CCceEEEEeCCCCCchH-HHHHHHHHHHHh------CCCeEEEEeC-CCCHHHHHHHHHHHhc--CCCHHHhhcCCCCHH
Confidence 34568899999999996 455555554321 1445666643 2333344433321111 222221222222223
Q ss_pred HHHHH------HcCCcEEEe-----ChHHHHHHHHccccccCceeEEEecchhhhh
Q 006824 341 QFKEL------KAGCEIVIA-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (630)
Q Consensus 341 ~~~~l------~~~~dIiv~-----Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~ 385 (630)
.+..+ ..+..+.|. |+..+...+++-......+++||||=.+.|.
T Consensus 272 e~~~~~~a~~~l~~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~ 327 (448)
T PRK05748 272 DWPKLTIAMGSLSDAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQ 327 (448)
T ss_pred HHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcC
Confidence 33221 123455553 4445544433211111268899999999874
No 410
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=89.31 E-value=1.1 Score=46.46 Aligned_cols=44 Identities=23% Similarity=0.223 Sum_probs=28.3
Q ss_pred HHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHH
Q 006824 259 ILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELA 311 (630)
Q Consensus 259 il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La 311 (630)
+..+.+++++|+||||||.. +-.++.++- ...+++.+=-+.||.
T Consensus 157 v~~~~nili~G~tgSGKTTl-l~aL~~~ip--------~~~ri~tiEd~~El~ 200 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTF-TNAALREIP--------AIERLITVEDAREIV 200 (332)
T ss_pred HHcCCcEEEECCCCCCHHHH-HHHHHhhCC--------CCCeEEEecCCCccc
Confidence 44678999999999999963 344444431 134466655555553
No 411
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=89.30 E-value=1.8 Score=44.63 Aligned_cols=41 Identities=10% Similarity=0.061 Sum_probs=26.8
Q ss_pred CCcHHHHHHHHHHH----cCC---CEEEEeCCCChHHHHHHHHHHHHHh
Q 006824 247 KPTSIQCQALPIIL----SGR---DIIGIAKTGSGKTAAFVLPMIVHIM 288 (630)
Q Consensus 247 ~~~~~Q~~~i~~il----~g~---d~l~~a~TGsGKT~~~~l~~l~~~~ 288 (630)
.++|+|...+..+. ++| -.++.||.|.||+..+ ..+...++
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA-~~~a~~ll 50 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLV-ELFSRALL 50 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHH-HHHHHHHc
Confidence 35677777776654 444 5899999999999643 33334443
No 412
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=89.28 E-value=1.8 Score=46.14 Aligned_cols=54 Identities=20% Similarity=0.232 Sum_probs=31.6
Q ss_pred CCCCCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHH
Q 006824 222 RPVKTFEDCGFSTQLMHAISKQ---GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 222 ~p~~~~~~~~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~ 278 (630)
.|-.+|.+.+-.....+.+... .+..|.-++.-.+ -..+.+++.||+|+|||+.
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl---~~pkgvLL~GppGTGKT~L 195 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGI---DPPRGVLLYGPPGTGKTML 195 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCC---CCCceEEEECCCCCCHHHH
Confidence 3456788886655555544432 2222222222221 2357899999999999964
No 413
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=89.25 E-value=0.26 Score=52.57 Aligned_cols=56 Identities=23% Similarity=0.265 Sum_probs=38.4
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEE
Q 006824 264 DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVY 333 (630)
Q Consensus 264 d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~ 333 (630)
+++++|+||||||..+++|.+... +..++|+=|--++........++. |..|.++.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~----------~~s~vv~D~Kge~~~~t~~~r~~~----G~~V~v~n 56 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW----------PGSVVVLDPKGENFELTSEHRRAL----GRKVFVFD 56 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC----------CCCEEEEccchhHHHHHHHHHHHc----CCeEEEEc
Confidence 578999999999999888876542 234788888888886554444432 55554443
No 414
>PRK04841 transcriptional regulator MalT; Provisional
Probab=89.23 E-value=3 Score=49.85 Aligned_cols=44 Identities=16% Similarity=0.309 Sum_probs=34.5
Q ss_pred CceeEEEecchhhhhcCCcHHHHHHHHhhcCCCCcEEEEeeccc
Q 006824 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMP 414 (630)
Q Consensus 371 ~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q~l~~SAT~~ 414 (630)
..--+||||++|.+-+......+..++.+.++...+|+.|-+.|
T Consensus 120 ~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~ 163 (903)
T PRK04841 120 HQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLP 163 (903)
T ss_pred CCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence 34467999999997655556688888999888888888887754
No 415
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=89.22 E-value=2.1 Score=47.83 Aligned_cols=17 Identities=29% Similarity=0.225 Sum_probs=14.1
Q ss_pred CCEEEEeCCCChHHHHH
Q 006824 263 RDIIGIAKTGSGKTAAF 279 (630)
Q Consensus 263 ~d~l~~a~TGsGKT~~~ 279 (630)
+.+|+.||.|+|||..+
T Consensus 39 hA~Lf~GP~GvGKTTlA 55 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIA 55 (605)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35789999999999753
No 416
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=89.21 E-value=1.4 Score=51.20 Aligned_cols=45 Identities=11% Similarity=0.186 Sum_probs=26.6
Q ss_pred ceeEEEecchhhhhcC---C-----cHHHHHHHHhhc---CCCCcEEEEeecccHH
Q 006824 372 RVTYLVLDEADRMFDL---G-----FEPQIRSIVGQI---RPDRQTLLFSATMPRK 416 (630)
Q Consensus 372 ~i~~lVvDEah~~~~~---~-----~~~~v~~i~~~l---~~~~q~l~~SAT~~~~ 416 (630)
...+|+|||+|.+... . ....+..++..+ .....++++.||-.+.
T Consensus 546 ~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~ 601 (733)
T TIGR01243 546 APAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPD 601 (733)
T ss_pred CCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChh
Confidence 4578999999998532 1 112334444443 3455677777885543
No 417
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=89.10 E-value=3.5 Score=38.48 Aligned_cols=53 Identities=13% Similarity=0.268 Sum_probs=35.1
Q ss_pred CceeEEEecchhhhhcCCcH--HHHHHHHhhcCCCCcEEEEeecccHHHHHHHHH
Q 006824 371 SRVTYLVLDEADRMFDLGFE--PQIRSIVGQIRPDRQTLLFSATMPRKVEKLARE 423 (630)
Q Consensus 371 ~~i~~lVvDEah~~~~~~~~--~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~~ 423 (630)
..+++||+||.-..+..++. ..|..++..-+....+|+.--..|+.+.+++..
T Consensus 121 ~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADl 175 (198)
T COG2109 121 GKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELADL 175 (198)
T ss_pred CCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHH
Confidence 36999999999998877744 445566664444444444444477777776654
No 418
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=89.08 E-value=5 Score=41.28 Aligned_cols=38 Identities=18% Similarity=0.273 Sum_probs=24.2
Q ss_pred ceeEEEecchhhhhcCCcHHHHHHHHhhcCCCCcEEEEe
Q 006824 372 RVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (630)
Q Consensus 372 ~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q~l~~S 410 (630)
...+|||||+|.+.... ...+..++....+...+|+.+
T Consensus 102 ~~~vviiDe~~~l~~~~-~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 102 PFKIIFLDEADNLTSDA-QQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CceEEEEeCcccCCHHH-HHHHHHHHhcCCCCCeEEEEe
Confidence 46799999999875432 345555666655555555544
No 419
>PRK08760 replicative DNA helicase; Provisional
Probab=88.86 E-value=2.5 Score=46.28 Aligned_cols=114 Identities=17% Similarity=0.112 Sum_probs=56.5
Q ss_pred cCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHH
Q 006824 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 340 (630)
.|.=+++.|.+|+|||. |++-+..++... .+..|+|+.. -.-..|+...+..... ++....+..|.-...
T Consensus 228 ~G~LivIaarPg~GKTa-fal~iA~~~a~~------~g~~V~~fSl-EMs~~ql~~Rl~a~~s--~i~~~~i~~g~l~~~ 297 (476)
T PRK08760 228 PTDLIILAARPAMGKTT-FALNIAEYAAIK------SKKGVAVFSM-EMSASQLAMRLISSNG--RINAQRLRTGALEDE 297 (476)
T ss_pred CCceEEEEeCCCCChhH-HHHHHHHHHHHh------cCCceEEEec-cCCHHHHHHHHHHhhC--CCcHHHHhcCCCCHH
Confidence 34567889999999996 455555444321 1444666654 2233455444433321 222111222222222
Q ss_pred HHHHH------HcCCcEEEe-----ChHHHHHHHHccccccCceeEEEecchhhhh
Q 006824 341 QFKEL------KAGCEIVIA-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (630)
Q Consensus 341 ~~~~l------~~~~dIiv~-----Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~ 385 (630)
.+..+ .....+.|. |+..+...+++-. .-..+++||||=.+.|.
T Consensus 298 e~~~~~~a~~~l~~~~l~I~d~~~~t~~~I~~~~r~l~-~~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 298 DWARVTGAIKMLKETKIFIDDTPGVSPEVLRSKCRRLK-REHDLGLIVIDYLQLMS 352 (476)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHH-HhcCCCEEEEecHHhcC
Confidence 22221 123455554 4455544443211 12358899999998774
No 420
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=88.83 E-value=0.27 Score=54.71 Aligned_cols=156 Identities=16% Similarity=0.173 Sum_probs=86.0
Q ss_pred CCCcHHHHHHHHHHHcC---------C-CEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHH
Q 006824 246 EKPTSIQCQALPIILSG---------R-DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIY 315 (630)
Q Consensus 246 ~~~~~~Q~~~i~~il~g---------~-d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~ 315 (630)
..++..|.+++-+..+. | ..|+....|.||-.+..-.++...+ +.+.++|++.-+..|-....
T Consensus 263 g~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyL-------kGRKrAlW~SVSsDLKfDAE 335 (1300)
T KOG1513|consen 263 GHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYL-------KGRKRALWFSVSSDLKFDAE 335 (1300)
T ss_pred cchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhh-------cccceeEEEEeccccccchh
Confidence 45778888888665533 1 3455555565554321122233322 23677999998888877666
Q ss_pred HHHHHHhhhcCceEEEEE----CCCChHHHHHHHHcCCcEEEeChHHHHHHHHc-ccc---c--------cCc-eeEEEe
Q 006824 316 LETKKFAKSHGIRVSAVY----GGMSKLDQFKELKAGCEIVIATPGRLIDMLKM-KAL---T--------MSR-VTYLVL 378 (630)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~----gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~-~~~---~--------l~~-i~~lVv 378 (630)
..+..... .++.+..+. +-.+..+. ...+ -.||+||+-.|+---.. ... . -.. =.+||+
T Consensus 336 RDL~DigA-~~I~V~alnK~KYakIss~en-~n~k--rGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvf 411 (1300)
T KOG1513|consen 336 RDLRDIGA-TGIAVHALNKFKYAKISSKEN-TNTK--RGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVF 411 (1300)
T ss_pred hchhhcCC-CCccceehhhccccccccccc-CCcc--ceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEe
Confidence 66666543 244443321 10000000 0111 35999999888643221 100 0 011 258999
Q ss_pred cchhhhhcC---------CcHHHHHHHHhhcCCCCcEEEEeecc
Q 006824 379 DEADRMFDL---------GFEPQIRSIVGQIRPDRQTLLFSATM 413 (630)
Q Consensus 379 DEah~~~~~---------~~~~~v~~i~~~l~~~~q~l~~SAT~ 413 (630)
||||+-.+. ..+..+..+-+.+ |+.+++.-|||-
T Consensus 412 DECHkAKNL~p~~~~k~TKtG~tVLdLQk~L-P~ARVVYASATG 454 (1300)
T KOG1513|consen 412 DECHKAKNLVPTAGAKSTKTGKTVLDLQKKL-PNARVVYASATG 454 (1300)
T ss_pred hhhhhhcccccccCCCcCcccHhHHHHHHhC-CCceEEEeeccC
Confidence 999985441 1345555665655 567799999994
No 421
>PF05729 NACHT: NACHT domain
Probab=88.76 E-value=2.9 Score=38.02 Aligned_cols=25 Identities=16% Similarity=0.250 Sum_probs=17.2
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHHhc
Q 006824 264 DIIGIAKTGSGKTAAFVLPMIVHIMD 289 (630)
Q Consensus 264 d~l~~a~TGsGKT~~~~l~~l~~~~~ 289 (630)
=+++.|+.|+|||.. +..+...+..
T Consensus 2 ~l~I~G~~G~GKStl-l~~~~~~~~~ 26 (166)
T PF05729_consen 2 VLWISGEPGSGKSTL-LRKLAQQLAE 26 (166)
T ss_pred EEEEECCCCCChHHH-HHHHHHHHHh
Confidence 478999999999974 3444444433
No 422
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=88.71 E-value=0.77 Score=49.40 Aligned_cols=41 Identities=24% Similarity=0.276 Sum_probs=30.0
Q ss_pred CcHHHHHHHHHHHcCC--CEEEEeCCCChHHHHHHHHHHHHHhc
Q 006824 248 PTSIQCQALPIILSGR--DIIGIAKTGSGKTAAFVLPMIVHIMD 289 (630)
Q Consensus 248 ~~~~Q~~~i~~il~g~--d~l~~a~TGsGKT~~~~l~~l~~~~~ 289 (630)
+++.|.+.+..+++.. =+|+.||||||||.+ +-.++..+..
T Consensus 242 ~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~ 284 (500)
T COG2804 242 MSPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNT 284 (500)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcC
Confidence 3678888887777553 468899999999975 5556666544
No 423
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=88.70 E-value=0.74 Score=47.99 Aligned_cols=45 Identities=24% Similarity=0.220 Sum_probs=29.5
Q ss_pred HHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHH
Q 006824 258 IILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELA 311 (630)
Q Consensus 258 ~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La 311 (630)
++..+.+++++|+||||||.. +-.++.++ . ...+++.+-.+.||.
T Consensus 158 ~v~~~~nilI~G~tGSGKTTl-l~aLl~~i-~-------~~~rivtiEd~~El~ 202 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTTM-SKTLISAI-P-------PQERLITIEDTLELV 202 (344)
T ss_pred HHHcCCeEEEECCCCccHHHH-HHHHHccc-C-------CCCCEEEECCCcccc
Confidence 345778999999999999963 33333332 1 133467777777664
No 424
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=88.53 E-value=1.4 Score=41.70 Aligned_cols=32 Identities=28% Similarity=0.340 Sum_probs=25.4
Q ss_pred CCcHHHHHHHHHHH-cCCCEEEEeCCCChHHHH
Q 006824 247 KPTSIQCQALPIIL-SGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 247 ~~~~~Q~~~i~~il-~g~d~l~~a~TGsGKT~~ 278 (630)
.+++-|...+.... .|..++++++||||||..
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTL 41 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 45677777776654 678999999999999964
No 425
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=88.50 E-value=0.46 Score=53.27 Aligned_cols=57 Identities=25% Similarity=0.167 Sum_probs=42.0
Q ss_pred CCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEE
Q 006824 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVY 333 (630)
Q Consensus 263 ~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~ 333 (630)
++++++||||||||..+++|.+... +.-++|+=|--++........++. |.+|.++.
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~----------~~S~VV~DpKGEl~~~Ta~~R~~~----G~~V~vfd 215 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW----------EDSVVVHDIKLENYELTSGWREKQ----GQKVFVWE 215 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC----------CCCEEEEeCcHHHHHHHHHHHHHC----CCeEEEEe
Confidence 5899999999999999999988764 223788888888887665544443 55555443
No 426
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=88.42 E-value=1.6 Score=51.58 Aligned_cols=77 Identities=16% Similarity=0.242 Sum_probs=65.3
Q ss_pred CCCCCEEEEccchhhHHHHHHHH----HhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEc-CCcccCCCCCCccEE
Q 006824 468 IDDGDVLVFASKKTTVDEIESQL----AQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIAT-DVAARGLDIKSIKSV 542 (630)
Q Consensus 468 ~~~~~iLIF~~s~~~~~~l~~~L----~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT-~~~~~Gldi~~v~~V 542 (630)
..+.+|.|.|||.--|+.=++.| +...+++..++--.+.++...+++..++|+++|+|.| ..++.++-+.++..|
T Consensus 641 ~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLl 720 (1139)
T COG1197 641 MDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLL 720 (1139)
T ss_pred cCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecCCeE
Confidence 34568999999977666555554 4457788999999999999999999999999999999 677899999999999
Q ss_pred EE
Q 006824 543 VN 544 (630)
Q Consensus 543 I~ 544 (630)
|.
T Consensus 721 II 722 (1139)
T COG1197 721 II 722 (1139)
T ss_pred EE
Confidence 85
No 427
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=88.36 E-value=0.97 Score=52.26 Aligned_cols=62 Identities=21% Similarity=0.350 Sum_probs=51.9
Q ss_pred CCCCEEEEccchhhHHHHHHHHHhC----C-CcEEE-EeCCCCHHHHHHHHHHhhcCCceEEEEcCCc
Q 006824 469 DDGDVLVFASKKTTVDEIESQLAQK----G-FKAAA-LHGDKDQASRMEILQKFKSGVYHVLIATDVA 530 (630)
Q Consensus 469 ~~~~iLIF~~s~~~~~~l~~~L~~~----~-~~~~~-ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~~ 530 (630)
.+.++++.+||..-+..+++.|.+. + ..+.. +|+.++..++.+++++|.+|..+|||+|...
T Consensus 124 kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 124 KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 3478999999999998888888764 2 43333 9999999999999999999999999999543
No 428
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=88.25 E-value=1.5 Score=46.00 Aligned_cols=43 Identities=23% Similarity=0.176 Sum_probs=25.7
Q ss_pred cCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHH
Q 006824 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTREL 310 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~L 310 (630)
.+..++++||||||||.. +-.++.++... .+.+++.+--..++
T Consensus 121 ~~g~ili~G~tGSGKTT~-l~al~~~i~~~------~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTT-LASMIDYINKN------AAGHIITIEDPIEY 163 (343)
T ss_pred cCcEEEEECCCCCCHHHH-HHHHHHhhCcC------CCCEEEEEcCChhh
Confidence 356789999999999964 33344444221 13345555544444
No 429
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.19 E-value=2.5 Score=47.65 Aligned_cols=17 Identities=18% Similarity=0.378 Sum_probs=14.0
Q ss_pred CceeEEEecchhhhhcC
Q 006824 371 SRVTYLVLDEADRMFDL 387 (630)
Q Consensus 371 ~~i~~lVvDEah~~~~~ 387 (630)
.+++++||||+|+|...
T Consensus 123 g~~KV~IIDEvh~Ls~~ 139 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNT 139 (618)
T ss_pred CCceEEEEEChhhCCHH
Confidence 46889999999997643
No 430
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=88.16 E-value=0.78 Score=44.55 Aligned_cols=40 Identities=15% Similarity=0.345 Sum_probs=23.3
Q ss_pred eEEEecchhhhh-cC----CcHHHHHHHHhhc-CCCCcEEEEeecc
Q 006824 374 TYLVLDEADRMF-DL----GFEPQIRSIVGQI-RPDRQTLLFSATM 413 (630)
Q Consensus 374 ~~lVvDEah~~~-~~----~~~~~v~~i~~~l-~~~~q~l~~SAT~ 413 (630)
-+|||||+|.+. .. .+...+..++... ......++++++.
T Consensus 120 ~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~ 165 (234)
T PF01637_consen 120 VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSS 165 (234)
T ss_dssp EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESS
T ss_pred EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCc
Confidence 689999999988 21 2344455555552 2234455566665
No 431
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=88.16 E-value=3.7 Score=39.39 Aligned_cols=39 Identities=23% Similarity=0.201 Sum_probs=25.3
Q ss_pred cCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEccc
Q 006824 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPT 307 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Pt 307 (630)
.|+-+.+.+++|+|||.. ++.++.+... .+.+++++.-.
T Consensus 11 ~g~i~~i~G~~GsGKT~l-~~~~~~~~~~-------~g~~v~yi~~e 49 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNI-CMILAVNAAR-------QGKKVVYIDTE 49 (209)
T ss_pred CCeEEEEECCCCCCHHHH-HHHHHHHHHh-------CCCeEEEEECC
Confidence 346689999999999975 4444444432 24557776553
No 432
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.14 E-value=1.8 Score=47.58 Aligned_cols=75 Identities=23% Similarity=0.334 Sum_probs=62.7
Q ss_pred CCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcC-CcccC------C-CCCCccE
Q 006824 470 DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VAARG------L-DIKSIKS 541 (630)
Q Consensus 470 ~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~-~~~~G------l-di~~v~~ 541 (630)
.+.+||.+|++.-+......|...|+.+..++++.+..++..++..+..|+.+||++|. .+... + ....+..
T Consensus 51 ~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~ 130 (470)
T TIGR00614 51 DGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITL 130 (470)
T ss_pred CCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCE
Confidence 57899999999999988889999999999999999999999999999999999999994 33222 2 4556777
Q ss_pred EEE
Q 006824 542 VVN 544 (630)
Q Consensus 542 VI~ 544 (630)
||+
T Consensus 131 iVi 133 (470)
T TIGR00614 131 IAV 133 (470)
T ss_pred EEE
Confidence 775
No 433
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=88.04 E-value=0.55 Score=44.10 Aligned_cols=42 Identities=17% Similarity=0.323 Sum_probs=30.0
Q ss_pred CceeEEEecchhhhhcCCcHHHHHHHHhhcCCC-CcEEEEeec
Q 006824 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPD-RQTLLFSAT 412 (630)
Q Consensus 371 ~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~-~q~l~~SAT 412 (630)
....++++||...-++......+..++..+... .++++.|.-
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~ 157 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLK 157 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 567899999999988877677776666655433 666666554
No 434
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=88.02 E-value=6.6 Score=45.98 Aligned_cols=18 Identities=28% Similarity=0.375 Sum_probs=15.0
Q ss_pred cCCCEEEEeCCCChHHHH
Q 006824 261 SGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 261 ~g~d~l~~a~TGsGKT~~ 278 (630)
.+..+++.+|+|+|||..
T Consensus 346 ~~~~lll~GppG~GKT~l 363 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSL 363 (775)
T ss_pred CCceEEEECCCCCCHHHH
Confidence 345799999999999964
No 435
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=87.97 E-value=0.48 Score=47.69 Aligned_cols=28 Identities=39% Similarity=0.538 Sum_probs=20.7
Q ss_pred HcCCCEEEEeCCCChHHHHHHHHHHHHHhc
Q 006824 260 LSGRDIIGIAKTGSGKTAAFVLPMIVHIMD 289 (630)
Q Consensus 260 l~g~d~l~~a~TGsGKT~~~~l~~l~~~~~ 289 (630)
++..|+++.+|||||||+. .-.|+.+++
T Consensus 95 L~KSNILLiGPTGsGKTlL--AqTLAk~Ln 122 (408)
T COG1219 95 LSKSNILLIGPTGSGKTLL--AQTLAKILN 122 (408)
T ss_pred eeeccEEEECCCCCcHHHH--HHHHHHHhC
Confidence 4556899999999999964 345555554
No 436
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=87.90 E-value=2.3 Score=42.38 Aligned_cols=40 Identities=23% Similarity=0.381 Sum_probs=23.6
Q ss_pred hHHHHHHHHccccccCceeEEEecchhhhhcCCcHHHHHHHHhhc
Q 006824 356 PGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI 400 (630)
Q Consensus 356 p~~L~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l 400 (630)
|+-|..++. ++..-+++.|||.|++. ......+...+..+
T Consensus 91 ~gDlaaiLt----~Le~~DVLFIDEIHrl~-~~vEE~LYpaMEDf 130 (332)
T COG2255 91 PGDLAAILT----NLEEGDVLFIDEIHRLS-PAVEEVLYPAMEDF 130 (332)
T ss_pred hhhHHHHHh----cCCcCCeEEEehhhhcC-hhHHHHhhhhhhhe
Confidence 444445544 46677899999999964 22333444444443
No 437
>PHA00012 I assembly protein
Probab=87.87 E-value=3.5 Score=42.13 Aligned_cols=56 Identities=25% Similarity=0.274 Sum_probs=35.3
Q ss_pred CceeEEEecchhhhhcCC-cH----HHHHHHHhhcCCCCcEEEEeecccHHHHHHHHHHcC
Q 006824 371 SRVTYLVLDEADRMFDLG-FE----PQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILS 426 (630)
Q Consensus 371 ~~i~~lVvDEah~~~~~~-~~----~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~~~~~ 426 (630)
..-.++||||||..+..- +. ..+...+.+.+...-.++|-.--+..+...++..+.
T Consensus 80 p~gsLlVlDEaq~~fp~R~~~sk~p~~vie~l~~hRh~G~DvilITQ~ps~VDs~IR~ll~ 140 (361)
T PHA00012 80 SKNGLLVLDECGTWFNSRSWNDKERQPVIDWFLHARKLGWDIIFIIQDISIMDKQAREALA 140 (361)
T ss_pred CCCcEEEEECcccccCCCCcCcCCcHHHHHHHHHhccCCceEEEEcCCHHHHhHHHHHhhh
Confidence 466799999999987531 22 346666666666655555555555566666655443
No 438
>PRK09354 recA recombinase A; Provisional
Probab=87.82 E-value=2.8 Score=43.64 Aligned_cols=42 Identities=24% Similarity=0.251 Sum_probs=29.3
Q ss_pred CCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHH
Q 006824 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELA 311 (630)
Q Consensus 262 g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La 311 (630)
|+-+.+.+|+|||||.. +++++..... .+.++++|..-..+-
T Consensus 60 G~IteI~G~~GsGKTtL-al~~~~~~~~-------~G~~~~yId~E~s~~ 101 (349)
T PRK09354 60 GRIVEIYGPESSGKTTL-ALHAIAEAQK-------AGGTAAFIDAEHALD 101 (349)
T ss_pred CeEEEEECCCCCCHHHH-HHHHHHHHHH-------cCCcEEEECCccchH
Confidence 46788999999999974 5665555543 266688887655444
No 439
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.72 E-value=3.2 Score=46.87 Aligned_cols=17 Identities=18% Similarity=0.384 Sum_probs=13.9
Q ss_pred cCceeEEEecchhhhhc
Q 006824 370 MSRVTYLVLDEADRMFD 386 (630)
Q Consensus 370 l~~i~~lVvDEah~~~~ 386 (630)
.....+|||||+|.|..
T Consensus 118 ~~~~kVvIIDEa~~L~~ 134 (585)
T PRK14950 118 LARYKVYIIDEVHMLST 134 (585)
T ss_pred cCCeEEEEEeChHhCCH
Confidence 45678999999998764
No 440
>CHL00176 ftsH cell division protein; Validated
Probab=87.68 E-value=3.2 Score=47.14 Aligned_cols=16 Identities=25% Similarity=0.530 Sum_probs=14.3
Q ss_pred CCEEEEeCCCChHHHH
Q 006824 263 RDIIGIAKTGSGKTAA 278 (630)
Q Consensus 263 ~d~l~~a~TGsGKT~~ 278 (630)
+.+++.||+|+|||+.
T Consensus 217 ~gVLL~GPpGTGKT~L 232 (638)
T CHL00176 217 KGVLLVGPPGTGKTLL 232 (638)
T ss_pred ceEEEECCCCCCHHHH
Confidence 5799999999999964
No 441
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=87.65 E-value=2.8 Score=41.63 Aligned_cols=20 Identities=30% Similarity=0.302 Sum_probs=17.2
Q ss_pred HHcCCCEEEEeCCCChHHHH
Q 006824 259 ILSGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 259 il~g~d~l~~a~TGsGKT~~ 278 (630)
+-.|+.+++.++.|+|||..
T Consensus 13 i~~Gqr~~I~G~~G~GKTTL 32 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTL 32 (249)
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 45789999999999999953
No 442
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=87.57 E-value=4.4 Score=39.40 Aligned_cols=51 Identities=24% Similarity=0.272 Sum_probs=31.8
Q ss_pred CCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHH
Q 006824 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (630)
Q Consensus 262 g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 321 (630)
|.-+++.+++|+|||.. ++.++...+. ++.+++++.-. +-..++.+.+..+
T Consensus 16 g~~~li~G~~G~GKt~~-~~~~~~~~~~-------~g~~~~y~s~e-~~~~~l~~~~~~~ 66 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTF-SLQFLYQGLK-------NGEKAMYISLE-EREERILGYAKSK 66 (224)
T ss_pred CeEEEEECCCCCCHHHH-HHHHHHHHHh-------CCCeEEEEECC-CCHHHHHHHHHHc
Confidence 46789999999999963 4444433322 25567777553 4455666665554
No 443
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=87.56 E-value=3.4 Score=43.94 Aligned_cols=53 Identities=21% Similarity=0.278 Sum_probs=30.5
Q ss_pred CceeEEEecchhhhhcCC--------cHHHHHH----HHhhcCCCCcEEEEeecc-cHHHHHHHHH
Q 006824 371 SRVTYLVLDEADRMFDLG--------FEPQIRS----IVGQIRPDRQTLLFSATM-PRKVEKLARE 423 (630)
Q Consensus 371 ~~i~~lVvDEah~~~~~~--------~~~~v~~----i~~~l~~~~q~l~~SAT~-~~~~~~l~~~ 423 (630)
....+++|||+|.++..- ..-..+. ......++-++++++||. |.++..-++.
T Consensus 244 ~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~R 309 (428)
T KOG0740|consen 244 LQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARR 309 (428)
T ss_pred cCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHH
Confidence 356788899999987421 1111222 222334566889999995 4444444443
No 444
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=87.52 E-value=1.2 Score=46.38 Aligned_cols=16 Identities=38% Similarity=0.526 Sum_probs=14.8
Q ss_pred CCEEEEeCCCChHHHH
Q 006824 263 RDIIGIAKTGSGKTAA 278 (630)
Q Consensus 263 ~d~l~~a~TGsGKT~~ 278 (630)
|++++-+|+|+|||+.
T Consensus 385 RNilfyGPPGTGKTm~ 400 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMF 400 (630)
T ss_pred hheeeeCCCCCCchHH
Confidence 7999999999999975
No 445
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=87.51 E-value=1.9 Score=47.79 Aligned_cols=68 Identities=25% Similarity=0.490 Sum_probs=54.7
Q ss_pred EEEEccchhhHHHHHHHHHhC-----CCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcC-----CcccC-CCCCCccE
Q 006824 473 VLVFASKKTTVDEIESQLAQK-----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-----VAARG-LDIKSIKS 541 (630)
Q Consensus 473 iLIF~~s~~~~~~l~~~L~~~-----~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~-----~~~~G-ldi~~v~~ 541 (630)
.||++||++-|..+++.+... ++.+..++|+++...+.. .++.| ..|||+|+ .+.++ +++..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~---~l~~~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIE---ALKRG-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHH---HHhcC-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 899999999999988887643 577899999998776654 44556 99999995 44566 89999999
Q ss_pred EEE
Q 006824 542 VVN 544 (630)
Q Consensus 542 VI~ 544 (630)
+|.
T Consensus 178 lVl 180 (513)
T COG0513 178 LVL 180 (513)
T ss_pred EEe
Confidence 995
No 446
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=87.40 E-value=2.1 Score=40.48 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=17.6
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHHhc
Q 006824 264 DIIGIAKTGSGKTAAFVLPMIVHIMD 289 (630)
Q Consensus 264 d~l~~a~TGsGKT~~~~l~~l~~~~~ 289 (630)
.+|+.||.|+|||.. +..+...++.
T Consensus 16 ~~L~~G~~G~gkt~~-a~~~~~~l~~ 40 (188)
T TIGR00678 16 AYLFAGPEGVGKELL-ALALAKALLC 40 (188)
T ss_pred EEEEECCCCCCHHHH-HHHHHHHHcC
Confidence 489999999999964 3344455443
No 447
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=87.38 E-value=1.4 Score=50.74 Aligned_cols=71 Identities=18% Similarity=0.105 Sum_probs=53.6
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhh
Q 006824 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (630)
Q Consensus 247 ~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~ 323 (630)
.|++-|.+++... ...+++.|..|||||.+ +..-+.|++...... ...+|.|+=|+-.|.++.+.+.++..
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~v-lt~Ria~li~~~~v~---p~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRV-LTERIAYLIAAGGVD---PEQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhh-HHHHHHHHHHcCCcC---hHHeeeeechHHHHHHHHHHHHHHhC
Confidence 5789999999776 66789999999999987 444445555443222 22388899999999999999888875
No 448
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=87.31 E-value=0.9 Score=50.10 Aligned_cols=40 Identities=13% Similarity=0.157 Sum_probs=24.8
Q ss_pred cCceeEEEecchhhhhcCCcHHHHHHHHhhcCCCCcEEEEe
Q 006824 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (630)
Q Consensus 370 l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q~l~~S 410 (630)
.....++||||||+|.... ...+...+...++...+|+.+
T Consensus 115 ~~~~KVvIIDEad~Lt~~A-~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKEA-FNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHHH-HHHHHHHHhhcCCceEEEEEE
Confidence 4578899999999976432 334445555544455555444
No 449
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=87.31 E-value=4.2 Score=44.77 Aligned_cols=59 Identities=19% Similarity=0.203 Sum_probs=39.3
Q ss_pred HHHHHHHc-----CCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHH
Q 006824 254 QALPIILS-----GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (630)
Q Consensus 254 ~~i~~il~-----g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 321 (630)
..+..++. |.-+++.+++|+|||.. ++.++..... +|.+++|++ +-+-..|+...+..+
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l-~~~f~~~~~~-------~ge~~~y~s-~eEs~~~i~~~~~~l 313 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLL-VSKFLENACA-------NKERAILFA-YEESRAQLLRNAYSW 313 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHH-HHHHHHHHHH-------CCCeEEEEE-eeCCHHHHHHHHHHc
Confidence 34555554 46789999999999974 4444444332 366788876 556677777777665
No 450
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=87.23 E-value=1.6 Score=43.86 Aligned_cols=38 Identities=21% Similarity=0.281 Sum_probs=24.4
Q ss_pred cHHHHHHHHHHHc--CCCEEEEeCCCChHHHHHHHHHHHHH
Q 006824 249 TSIQCQALPIILS--GRDIIGIAKTGSGKTAAFVLPMIVHI 287 (630)
Q Consensus 249 ~~~Q~~~i~~il~--g~d~l~~a~TGsGKT~~~~l~~l~~~ 287 (630)
.+.|.+.+..++. +.-++++++||||||.. +-.++.++
T Consensus 65 ~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~-l~all~~i 104 (264)
T cd01129 65 KPENLEIFRKLLEKPHGIILVTGPTGSGKTTT-LYSALSEL 104 (264)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHH-HHHHHhhh
Confidence 3445555554443 34589999999999964 34455554
No 451
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.16 E-value=4.5 Score=45.83 Aligned_cols=17 Identities=24% Similarity=0.298 Sum_probs=14.1
Q ss_pred CCEEEEeCCCChHHHHH
Q 006824 263 RDIIGIAKTGSGKTAAF 279 (630)
Q Consensus 263 ~d~l~~a~TGsGKT~~~ 279 (630)
..+|+.||.|+|||.++
T Consensus 39 ~a~Lf~Gp~G~GKttlA 55 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSA 55 (620)
T ss_pred ceEEEECCCCCChHHHH
Confidence 35799999999999753
No 452
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=87.13 E-value=1.3 Score=50.02 Aligned_cols=43 Identities=26% Similarity=0.379 Sum_probs=31.7
Q ss_pred cCceeEEEecchhhhhcCCcHHHHHHHHhhcCCCCcEEEEeec
Q 006824 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSAT 412 (630)
Q Consensus 370 l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q~l~~SAT 412 (630)
+++-.++|+|||..-+|...+..+...+..+..++.+++.+.-
T Consensus 481 l~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHR 523 (567)
T COG1132 481 LRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHR 523 (567)
T ss_pred hcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEecc
Confidence 4556899999999988888788888777766666555554443
No 453
>PF12846 AAA_10: AAA-like domain
Probab=87.10 E-value=1.8 Score=43.95 Aligned_cols=41 Identities=29% Similarity=0.511 Sum_probs=29.1
Q ss_pred CCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHH
Q 006824 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELA 311 (630)
Q Consensus 263 ~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La 311 (630)
++++++|+||+|||.... .++..++.. ++.++|+=|..+..
T Consensus 2 ~h~~i~G~tGsGKT~~~~-~l~~~~~~~-------g~~~~i~D~~g~~~ 42 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLK-NLLEQLIRR-------GPRVVIFDPKGDYS 42 (304)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHHc-------CCCEEEEcCCchHH
Confidence 579999999999997544 555555443 67788887765444
No 454
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.08 E-value=1.6 Score=48.83 Aligned_cols=41 Identities=27% Similarity=0.356 Sum_probs=32.5
Q ss_pred cCceeEEEecchhhhhcCCcHHHHHHHHhhcCCCCcEEEEee
Q 006824 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSA 411 (630)
Q Consensus 370 l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q~l~~SA 411 (630)
+++-.++|+|||-.-+|...+..++..+..+..++ +++.=|
T Consensus 620 lr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~r-TVlvIA 660 (716)
T KOG0058|consen 620 LRNPRVLILDEATSALDAESEYLVQEALDRLMQGR-TVLVIA 660 (716)
T ss_pred hcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCC-eEEEEe
Confidence 56778999999999999888888999988877674 444433
No 455
>PRK05595 replicative DNA helicase; Provisional
Probab=86.98 E-value=2 Score=46.75 Aligned_cols=113 Identities=15% Similarity=0.135 Sum_probs=54.7
Q ss_pred CCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHH
Q 006824 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ 341 (630)
Q Consensus 262 g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~ 341 (630)
|.=+++.|.||+|||. +++.+..++.. ..|.+++++..- .-..|+...+.... .++....+..|.-....
T Consensus 201 g~liviaarpg~GKT~-~al~ia~~~a~------~~g~~vl~fSlE-ms~~~l~~R~~a~~--~~v~~~~~~~~~l~~~e 270 (444)
T PRK05595 201 GDMILIAARPSMGKTT-FALNIAEYAAL------REGKSVAIFSLE-MSKEQLAYKLLCSE--ANVDMLRLRTGNLEDKD 270 (444)
T ss_pred CcEEEEEecCCCChHH-HHHHHHHHHHH------HcCCcEEEEecC-CCHHHHHHHHHHHh--cCCCHHHHhcCCCCHHH
Confidence 4456789999999996 45555544321 125557777542 22334433322221 12222222222222223
Q ss_pred HHHHHc------CCcEEEe-----ChHHHHHHHHccccccCceeEEEecchhhhh
Q 006824 342 FKELKA------GCEIVIA-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (630)
Q Consensus 342 ~~~l~~------~~dIiv~-----Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~ 385 (630)
+..+.. ...+.|- |+..+...+++-.. -..+++||||=.+.|.
T Consensus 271 ~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~-~~~~~~vvIDylql~~ 324 (444)
T PRK05595 271 WENIARASGPLAAAKIFIDDTAGVSVMEMRSKCRRLKI-EHGIDMILIDYLQLMS 324 (444)
T ss_pred HHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCEEEEeHHHhcc
Confidence 322221 2344443 33444433332111 1358899999999875
No 456
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=86.83 E-value=0.53 Score=57.49 Aligned_cols=93 Identities=24% Similarity=0.305 Sum_probs=75.0
Q ss_pred EEEEccchhhHHHHHHHHHhCC-CcEEEEeCCCC-----------HHHHHHHHHHhhcCCceEEEEcCCcccCCCCCCcc
Q 006824 473 VLVFASKKTTVDEIESQLAQKG-FKAAALHGDKD-----------QASRMEILQKFKSGVYHVLIATDVAARGLDIKSIK 540 (630)
Q Consensus 473 iLIF~~s~~~~~~l~~~L~~~~-~~~~~ihg~~~-----------~~~r~~~~~~F~~g~~~VLvaT~~~~~Gldi~~v~ 540 (630)
.++||+....+..+...++... ..+..+.|.+. +..+.+++..|....+.+|++|.++..|+|++.++
T Consensus 295 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~~ 374 (1606)
T KOG0701|consen 295 GIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKCN 374 (1606)
T ss_pred heeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhhh
Confidence 4789988888887777776542 33333444432 22466888889999999999999999999999999
Q ss_pred EEEEeCCCCCHHHHHHHhhhcccCC
Q 006824 541 SVVNFDIARDMDMHVHRIGRTGRAG 565 (630)
Q Consensus 541 ~VI~~~~p~~~~~y~QriGR~gR~g 565 (630)
.|+.++.|.....|+|..||+-+++
T Consensus 375 ~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 375 LVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hheeccCcchHHHHHHhhcccccch
Confidence 9999999999999999999997765
No 457
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=86.78 E-value=8.4 Score=45.63 Aligned_cols=17 Identities=35% Similarity=0.472 Sum_probs=14.8
Q ss_pred CCEEEEeCCCChHHHHH
Q 006824 263 RDIIGIAKTGSGKTAAF 279 (630)
Q Consensus 263 ~d~l~~a~TGsGKT~~~ 279 (630)
.+.++.||+|+|||.+.
T Consensus 195 ~n~lL~G~pGvGKT~l~ 211 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIV 211 (852)
T ss_pred CceEEEcCCCCCHHHHH
Confidence 58999999999999653
No 458
>PRK06321 replicative DNA helicase; Provisional
Probab=86.71 E-value=8 Score=42.30 Aligned_cols=113 Identities=14% Similarity=0.067 Sum_probs=55.5
Q ss_pred CCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHH
Q 006824 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ 341 (630)
Q Consensus 262 g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~ 341 (630)
|.=+++.|.+|+|||. |++-+..++... .+..++|+.. -.-..|+...+... ..++....+..+.-....
T Consensus 226 G~LiiiaarPgmGKTa-fal~ia~~~a~~------~g~~v~~fSL-EMs~~ql~~Rlla~--~s~v~~~~i~~~~l~~~e 295 (472)
T PRK06321 226 SNLMILAARPAMGKTA-LALNIAENFCFQ------NRLPVGIFSL-EMTVDQLIHRIICS--RSEVESKKISVGDLSGRD 295 (472)
T ss_pred CcEEEEEeCCCCChHH-HHHHHHHHHHHh------cCCeEEEEec-cCCHHHHHHHHHHh--hcCCCHHHhhcCCCCHHH
Confidence 3456889999999996 455555554311 1344666642 22233443333221 112322222222222233
Q ss_pred HHHHH------cCCcEEEe-----ChHHHHHHHHccccccCceeEEEecchhhhh
Q 006824 342 FKELK------AGCEIVIA-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (630)
Q Consensus 342 ~~~l~------~~~dIiv~-----Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~ 385 (630)
+..+. ....+.|- |...+...+++-.. -..+++||||=.+.|.
T Consensus 296 ~~~~~~a~~~l~~~~~~idd~~~~ti~~i~~~~r~~~~-~~~~~lvvIDyLql~~ 349 (472)
T PRK06321 296 FQRIVSVVNEMQEHTLLIDDQPGLKITDLRARARRMKE-SYDIQFLIIDYLQLLS 349 (472)
T ss_pred HHHHHHHHHHHHcCCEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHHcC
Confidence 32211 23456664 44455444433211 2358899999999875
No 459
>PRK05636 replicative DNA helicase; Provisional
Probab=86.56 E-value=4.7 Score=44.48 Aligned_cols=110 Identities=22% Similarity=0.267 Sum_probs=52.9
Q ss_pred CCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEc---ccHHHHHHHHHHHHHHhhhcCceEEEEECCCCh
Q 006824 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICA---PTRELAHQIYLETKKFAKSHGIRVSAVYGGMSK 338 (630)
Q Consensus 262 g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~---Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~ 338 (630)
|.=+++.|.+|+|||.. .+-+..++... .+..++|+. +..+|+..+... ..++....+..|.-.
T Consensus 265 G~Liiiaarpg~GKT~~-al~~a~~~a~~------~g~~v~~fSlEMs~~ql~~R~ls~------~s~v~~~~i~~g~l~ 331 (505)
T PRK05636 265 GQMIIVAARPGVGKSTL-ALDFMRSASIK------HNKASVIFSLEMSKSEIVMRLLSA------EAEVRLSDMRGGKMD 331 (505)
T ss_pred CceEEEEeCCCCCHHHH-HHHHHHHHHHh------CCCeEEEEEeeCCHHHHHHHHHHH------hcCCCHHHHhcCCCC
Confidence 34568899999999964 44444443211 244566663 344444433211 112222222233222
Q ss_pred HHHHHHHH------cCCcEEEe-----ChHHHHHHHHccccccCceeEEEecchhhhh
Q 006824 339 LDQFKELK------AGCEIVIA-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (630)
Q Consensus 339 ~~~~~~l~------~~~dIiv~-----Tp~~L~~~l~~~~~~l~~i~~lVvDEah~~~ 385 (630)
.+.+..+. ....+.|. |...+...+++-.. -..+++||||=.|.|.
T Consensus 332 ~~e~~~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~-~~~~~lvvIDYLql~~ 388 (505)
T PRK05636 332 EDAWEKLVQRLGKIAQAPIFIDDSANLTMMEIRSKARRLKQ-KHDLKLIVVDYLQLMS 388 (505)
T ss_pred HHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhcC
Confidence 23332221 23455553 33344333332111 1358899999999875
No 460
>PRK10865 protein disaggregation chaperone; Provisional
Probab=86.55 E-value=7.5 Score=45.98 Aligned_cols=16 Identities=38% Similarity=0.499 Sum_probs=14.4
Q ss_pred CCEEEEeCCCChHHHH
Q 006824 263 RDIIGIAKTGSGKTAA 278 (630)
Q Consensus 263 ~d~l~~a~TGsGKT~~ 278 (630)
.++++.||+|+|||.+
T Consensus 200 ~n~lL~G~pGvGKT~l 215 (857)
T PRK10865 200 NNPVLIGEPGVGKTAI 215 (857)
T ss_pred CceEEECCCCCCHHHH
Confidence 4899999999999965
No 461
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=86.40 E-value=3.1 Score=42.90 Aligned_cols=44 Identities=23% Similarity=0.280 Sum_probs=27.7
Q ss_pred CCEEEEeCCCChHHHHHHHHHHHHHhcCCc--------ccccCCCeEEEEccc
Q 006824 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPE--------LQKEEGPIGVICAPT 307 (630)
Q Consensus 263 ~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~--------~~~~~~~~vLil~Pt 307 (630)
...|+.||.|+||+.. ...+...++.... ....+.|-++++.|+
T Consensus 27 ha~Lf~G~~G~Gk~~~-A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~ 78 (314)
T PRK07399 27 PAYLFAGPEGVGRKLA-ALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPT 78 (314)
T ss_pred ceEEEECCCCCCHHHH-HHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecc
Confidence 3689999999999964 4444555554321 123445666777774
No 462
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=86.37 E-value=2.3 Score=40.42 Aligned_cols=52 Identities=23% Similarity=0.405 Sum_probs=28.4
Q ss_pred ceeEEEecchhhhhcCCcH-----HHHHHHHhhcCCCCcEEEEeecccHHHHHHHHH
Q 006824 372 RVTYLVLDEADRMFDLGFE-----PQIRSIVGQIRPDRQTLLFSATMPRKVEKLARE 423 (630)
Q Consensus 372 ~i~~lVvDEah~~~~~~~~-----~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~~ 423 (630)
.-.++||||||.++..... +.+...+...+....-|+|+.--+..+...++.
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~~~~id~~ir~ 135 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQSPSQIDKFIRD 135 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES-GGGB-HHHHC
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCCHHHHhHHHHH
Confidence 4578999999997754322 233355666666655666665555555555554
No 463
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=86.13 E-value=0.63 Score=45.60 Aligned_cols=44 Identities=32% Similarity=0.415 Sum_probs=29.1
Q ss_pred CCCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCC-CEEEEeCCCChHHHHHHHHHHHH
Q 006824 223 PVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGR-DIIGIAKTGSGKTAAFVLPMIVH 286 (630)
Q Consensus 223 p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~-d~l~~a~TGsGKT~~~~l~~l~~ 286 (630)
.+.+|++++||+.+.+.. +..| =+|++++|||||+.+ +..++.|
T Consensus 106 ~IPt~eeL~LPevlk~la-------------------~~kRGLviiVGaTGSGKSTt-mAaMi~y 150 (375)
T COG5008 106 KIPTFEELKLPEVLKDLA-------------------LAKRGLVIIVGATGSGKSTT-MAAMIGY 150 (375)
T ss_pred cCCcHHhcCCcHHHHHhh-------------------cccCceEEEECCCCCCchhh-HHHHhcc
Confidence 456788888877765432 1222 378899999999975 4455544
No 464
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=86.12 E-value=16 Score=34.56 Aligned_cols=71 Identities=18% Similarity=0.247 Sum_probs=51.3
Q ss_pred CCCEEEEccchhhHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcCC-----c-ccCCCCCCc
Q 006824 470 DGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDV-----A-ARGLDIKSI 539 (630)
Q Consensus 470 ~~~iLIF~~s~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~~-----~-~~Gldi~~v 539 (630)
..++||.+++..-+......+... ++.+..++|+.+..+...... +...|+|+|.- + ..-++++++
T Consensus 69 ~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l~~~l~~~~~~~~~l 144 (203)
T cd00268 69 GPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGRLLDLLERGKLDLSKV 144 (203)
T ss_pred CceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcCCCChhhC
Confidence 457999999999888877666543 678899999988766543332 66889999941 2 223667788
Q ss_pred cEEEE
Q 006824 540 KSVVN 544 (630)
Q Consensus 540 ~~VI~ 544 (630)
..+|.
T Consensus 145 ~~lIv 149 (203)
T cd00268 145 KYLVL 149 (203)
T ss_pred CEEEE
Confidence 88775
No 465
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=86.10 E-value=1 Score=50.23 Aligned_cols=41 Identities=17% Similarity=0.300 Sum_probs=29.0
Q ss_pred cCceeEEEecchhhhhcCCcHHHHHHHHhhcCCCCcEEEEe
Q 006824 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (630)
Q Consensus 370 l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q~l~~S 410 (630)
+++-.++|+||+-.-+|......+...+..+.+++-+|+.|
T Consensus 486 l~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiIt 526 (529)
T TIGR02868 486 LADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVIT 526 (529)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 45678899999988777777777777776665555555544
No 466
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=86.09 E-value=4 Score=43.51 Aligned_cols=16 Identities=25% Similarity=0.451 Sum_probs=14.4
Q ss_pred CCEEEEeCCCChHHHH
Q 006824 263 RDIIGIAKTGSGKTAA 278 (630)
Q Consensus 263 ~d~l~~a~TGsGKT~~ 278 (630)
+.+++.||+|+|||+.
T Consensus 166 ~gvLL~GppGtGKT~l 181 (389)
T PRK03992 166 KGVLLYGPPGTGKTLL 181 (389)
T ss_pred CceEEECCCCCChHHH
Confidence 5799999999999964
No 467
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=86.03 E-value=8.1 Score=42.81 Aligned_cols=130 Identities=15% Similarity=0.204 Sum_probs=80.6
Q ss_pred HcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHHhhh-cCce-EEEEECCCC
Q 006824 260 LSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS-HGIR-VSAVYGGMS 337 (630)
Q Consensus 260 l~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~-~~~~-~~~~~gg~~ 337 (630)
+..+-.+..-|=--|||. |+.|++..++.. -.|-++.|++.-+-.++-+.+++..-+.. ++-+ +...
T Consensus 200 FKQkaTVFLVPRRHGKTW-f~VpiIsllL~s-----~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~----- 268 (668)
T PHA03372 200 FKQKATVFLVPRRHGKTW-FIIPIISFLLKN-----IIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIEN----- 268 (668)
T ss_pred hhccceEEEecccCCcee-hHHHHHHHHHHh-----hcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeee-----
Confidence 455666777788899997 688888888763 23677999999988887777666433321 1211 1111
Q ss_pred hHHHHHHHHcCCcEEEeChHHH-----HHHHHccccccCceeEEEecchhhhhcCCcHHHHHHHHhhcC-CCCcEEEEee
Q 006824 338 KLDQFKELKAGCEIVIATPGRL-----IDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIR-PDRQTLLFSA 411 (630)
Q Consensus 338 ~~~~~~~l~~~~dIiv~Tp~~L-----~~~l~~~~~~l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~-~~~q~l~~SA 411 (630)
++-.|.+.-|+.= ......+...-..+.+++|||||-+. ...+..|+..+. ++.++|+.|.
T Consensus 269 ---------k~~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~----~~a~~tilgfm~q~~~KiIfISS 335 (668)
T PHA03372 269 ---------KDNVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIK----KDAFNTILGFLAQNTTKIIFISS 335 (668)
T ss_pred ---------cCcEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccC----HHHHHHhhhhhcccCceEEEEeC
Confidence 1123444433211 11122334445678999999999754 445666666554 5678888887
Q ss_pred cc
Q 006824 412 TM 413 (630)
Q Consensus 412 T~ 413 (630)
|.
T Consensus 336 ~N 337 (668)
T PHA03372 336 TN 337 (668)
T ss_pred CC
Confidence 74
No 468
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=85.97 E-value=15 Score=34.21 Aligned_cols=52 Identities=19% Similarity=0.342 Sum_probs=36.6
Q ss_pred CceeEEEecchhhhhcCCcH--HHHHHHHhhcCCCCcEEEEeecccHHHHHHHH
Q 006824 371 SRVTYLVLDEADRMFDLGFE--PQIRSIVGQIRPDRQTLLFSATMPRKVEKLAR 422 (630)
Q Consensus 371 ~~i~~lVvDEah~~~~~~~~--~~v~~i~~~l~~~~q~l~~SAT~~~~~~~l~~ 422 (630)
..+++||+||+-..++.++. ..+..+++.-++..-+|+.--.+|+.+.+++.
T Consensus 114 ~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~AD 167 (178)
T PRK07414 114 GRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAIAD 167 (178)
T ss_pred CCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCC
Confidence 57899999999998888754 45666777655555566555567777665553
No 469
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=85.94 E-value=14 Score=42.58 Aligned_cols=12 Identities=33% Similarity=0.456 Sum_probs=9.1
Q ss_pred CcEEEEeecccH
Q 006824 404 RQTLLFSATMPR 415 (630)
Q Consensus 404 ~q~l~~SAT~~~ 415 (630)
+-+++.|+|+.|
T Consensus 481 rsIiLtSGTLsP 492 (945)
T KOG1132|consen 481 RSIILTSGTLSP 492 (945)
T ss_pred eeEEEecccccC
Confidence 457888998865
No 470
>CHL00095 clpC Clp protease ATP binding subunit
Probab=85.74 E-value=5.2 Score=47.18 Aligned_cols=17 Identities=41% Similarity=0.442 Sum_probs=15.0
Q ss_pred CCEEEEeCCCChHHHHH
Q 006824 263 RDIIGIAKTGSGKTAAF 279 (630)
Q Consensus 263 ~d~l~~a~TGsGKT~~~ 279 (630)
.++++.||+|+|||.+.
T Consensus 201 ~n~lL~G~pGvGKTal~ 217 (821)
T CHL00095 201 NNPILIGEPGVGKTAIA 217 (821)
T ss_pred CCeEEECCCCCCHHHHH
Confidence 58999999999999653
No 471
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=85.73 E-value=5.6 Score=43.93 Aligned_cols=22 Identities=18% Similarity=0.375 Sum_probs=16.8
Q ss_pred CCEEEEeCCCChHHHHHHHHHHHH
Q 006824 263 RDIIGIAKTGSGKTAAFVLPMIVH 286 (630)
Q Consensus 263 ~d~l~~a~TGsGKT~~~~l~~l~~ 286 (630)
+.+++.+|+|+|||.. +.++..
T Consensus 89 ~giLL~GppGtGKT~l--a~alA~ 110 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLL--AKAVAG 110 (495)
T ss_pred CcEEEECCCCCCHHHH--HHHHHH
Confidence 5799999999999964 344443
No 472
>PRK10436 hypothetical protein; Provisional
Probab=85.57 E-value=1.9 Score=46.79 Aligned_cols=36 Identities=25% Similarity=0.272 Sum_probs=23.2
Q ss_pred HHHHHHHHHH--cCCCEEEEeCCCChHHHHHHHHHHHHH
Q 006824 251 IQCQALPIIL--SGRDIIGIAKTGSGKTAAFVLPMIVHI 287 (630)
Q Consensus 251 ~Q~~~i~~il--~g~d~l~~a~TGsGKT~~~~l~~l~~~ 287 (630)
.|.+.+..++ .+.-++++||||||||.+ +..++.++
T Consensus 205 ~~~~~l~~~~~~~~GliLvtGpTGSGKTTt-L~a~l~~~ 242 (462)
T PRK10436 205 AQLAQFRQALQQPQGLILVTGPTGSGKTVT-LYSALQTL 242 (462)
T ss_pred HHHHHHHHHHHhcCCeEEEECCCCCChHHH-HHHHHHhh
Confidence 3444444443 334688999999999975 34556665
No 473
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=85.44 E-value=5.4 Score=40.11 Aligned_cols=30 Identities=27% Similarity=0.406 Sum_probs=20.3
Q ss_pred HHHHHc-C--CCEEEEeCCCChHHHHHHHHHHHHH
Q 006824 256 LPIILS-G--RDIIGIAKTGSGKTAAFVLPMIVHI 287 (630)
Q Consensus 256 i~~il~-g--~d~l~~a~TGsGKT~~~~l~~l~~~ 287 (630)
++.+.. + +++++.+++|+|||.. +-++...
T Consensus 102 l~~l~~~~~~~~~~i~g~~g~GKttl--~~~l~~~ 134 (270)
T TIGR02858 102 LPYLVRNNRVLNTLIISPPQCGKTTL--LRDLARI 134 (270)
T ss_pred HHHHHhCCCeeEEEEEcCCCCCHHHH--HHHHhCc
Confidence 445543 3 5889999999999963 4444443
No 474
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=85.42 E-value=1.5 Score=48.05 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=24.0
Q ss_pred cHHHHHHHHHHHcC-C-CEEEEeCCCChHHHHHHHHHHHHH
Q 006824 249 TSIQCQALPIILSG-R-DIIGIAKTGSGKTAAFVLPMIVHI 287 (630)
Q Consensus 249 ~~~Q~~~i~~il~g-~-d~l~~a~TGsGKT~~~~l~~l~~~ 287 (630)
.+-|.+.+..++.. + -++++||||||||.+ +-.++.++
T Consensus 227 ~~~~~~~l~~~~~~~~GlilitGptGSGKTTt-L~a~L~~l 266 (486)
T TIGR02533 227 SPELLSRFERLIRRPHGIILVTGPTGSGKTTT-LYAALSRL 266 (486)
T ss_pred CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH-HHHHHhcc
Confidence 34455556555543 3 368999999999975 33345444
No 475
>PRK14701 reverse gyrase; Provisional
Probab=85.15 E-value=3.2 Score=52.15 Aligned_cols=59 Identities=12% Similarity=0.290 Sum_probs=52.3
Q ss_pred CCCEEEEccchhhHHHHHHHHHhC------CCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcC
Q 006824 470 DGDVLVFASKKTTVDEIESQLAQK------GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD 528 (630)
Q Consensus 470 ~~~iLIF~~s~~~~~~l~~~L~~~------~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~ 528 (630)
..++||.+|++.-+..+.+.|... ++.+..+||+++..++..+++.+.+|...|||+|.
T Consensus 122 g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TP 186 (1638)
T PRK14701 122 GKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTA 186 (1638)
T ss_pred CCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECC
Confidence 458999999999999998888763 46778999999999999999999999999999995
No 476
>PRK06620 hypothetical protein; Validated
Probab=84.98 E-value=5 Score=38.88 Aligned_cols=106 Identities=14% Similarity=0.076 Sum_probs=58.0
Q ss_pred EEEEcccHHHHHHHHHHHHHHhhhcC-ceEEEEECC--CChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEE
Q 006824 301 GVICAPTRELAHQIYLETKKFAKSHG-IRVSAVYGG--MSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLV 377 (630)
Q Consensus 301 vLil~Ptr~La~Q~~~~~~~~~~~~~-~~~~~~~gg--~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~i~~lV 377 (630)
-+|+.+....|......+.+...... ....+++|. ..++.....+.......+.+...... ..+...++++
T Consensus 17 ~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~~~~~~~------~~~~~~d~ll 90 (214)
T PRK06620 17 EFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIKDIFFNE------EILEKYNAFI 90 (214)
T ss_pred hhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcchhhhch------hHHhcCCEEE
Confidence 47888877777777666554211111 145677874 44555555554444444544322211 1234568899
Q ss_pred ecchhhhhcCCcHHHHHHHHhhcCC-CCcEEEEeecccHH
Q 006824 378 LDEADRMFDLGFEPQIRSIVGQIRP-DRQTLLFSATMPRK 416 (630)
Q Consensus 378 vDEah~~~~~~~~~~v~~i~~~l~~-~~q~l~~SAT~~~~ 416 (630)
|||+|.+. ...+..+++.+.. ..++|+.|.|.|+.
T Consensus 91 iDdi~~~~----~~~lf~l~N~~~e~g~~ilits~~~p~~ 126 (214)
T PRK06620 91 IEDIENWQ----EPALLHIFNIINEKQKYLLLTSSDKSRN 126 (214)
T ss_pred Eeccccch----HHHHHHHHHHHHhcCCEEEEEcCCCccc
Confidence 99999642 2345556555543 34555555555554
No 477
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=84.74 E-value=0.99 Score=51.28 Aligned_cols=43 Identities=19% Similarity=0.189 Sum_probs=32.5
Q ss_pred CCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHH
Q 006824 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIY 315 (630)
Q Consensus 263 ~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~ 315 (630)
++++++||||||||..+++|-+... ...++|+=|--++.....
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~----------~gS~VV~DpKGE~~~~Ta 182 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTF----------KGSVIALDVKGELFELTS 182 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcC----------CCCEEEEeCCchHHHHHH
Confidence 5899999999999999999987653 123677777777765443
No 478
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=84.50 E-value=9.2 Score=43.78 Aligned_cols=17 Identities=18% Similarity=0.309 Sum_probs=13.9
Q ss_pred cCceeEEEecchhhhhc
Q 006824 370 MSRVTYLVLDEADRMFD 386 (630)
Q Consensus 370 l~~i~~lVvDEah~~~~ 386 (630)
.....++||||||.|..
T Consensus 116 ~g~~KV~IIDEa~~LT~ 132 (725)
T PRK07133 116 QSKYKIYIIDEVHMLSK 132 (725)
T ss_pred cCCCEEEEEEChhhCCH
Confidence 35778999999999763
No 479
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=84.27 E-value=6.9 Score=41.97 Aligned_cols=71 Identities=14% Similarity=0.281 Sum_probs=53.0
Q ss_pred CCCE-EEEccchhhHHHHHHHHHh----CCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcC-Cc-c----cCCCCCC
Q 006824 470 DGDV-LVFASKKTTVDEIESQLAQ----KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VA-A----RGLDIKS 538 (630)
Q Consensus 470 ~~~i-LIF~~s~~~~~~l~~~L~~----~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~-~~-~----~Gldi~~ 538 (630)
++++ ||.|||+.-|..++...++ .|+.++++||+.+.-+....++ -..-|+|||. ++ . .++|+..
T Consensus 295 ~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk----~g~EivVaTPgRlid~VkmKatn~~r 370 (731)
T KOG0339|consen 295 EGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK----EGAEIVVATPGRLIDMVKMKATNLSR 370 (731)
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh----cCCeEEEechHHHHHHHHhhccccee
Confidence 4565 6778999998888766554 4889999999999877655544 3467999994 22 1 6789999
Q ss_pred ccEEEE
Q 006824 539 IKSVVN 544 (630)
Q Consensus 539 v~~VI~ 544 (630)
++.+|+
T Consensus 371 vS~LV~ 376 (731)
T KOG0339|consen 371 VSYLVL 376 (731)
T ss_pred eeEEEE
Confidence 888885
No 480
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=84.19 E-value=0.9 Score=51.28 Aligned_cols=11 Identities=27% Similarity=0.362 Sum_probs=6.3
Q ss_pred ccccCCCCCCC
Q 006824 29 RLYVPPSSRYS 39 (630)
Q Consensus 29 ~~~~~~~~~~~ 39 (630)
+.|..+|.+..
T Consensus 1393 r~yEIGR~r~~ 1403 (1516)
T KOG1832|consen 1393 RMYEIGRRRPT 1403 (1516)
T ss_pred hhhhhcccCCC
Confidence 45666765554
No 481
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=84.05 E-value=5.8 Score=43.18 Aligned_cols=51 Identities=18% Similarity=0.212 Sum_probs=32.3
Q ss_pred CCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHH
Q 006824 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (630)
Q Consensus 262 g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 321 (630)
|.-+++.+++|+|||.. ++.++..+.. ++.++||+..- +...|+...+.++
T Consensus 94 GsvilI~G~pGsGKTTL-~lq~a~~~a~-------~g~kvlYvs~E-Es~~qi~~ra~rl 144 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTL-LLQVACQLAK-------NQMKVLYVSGE-ESLQQIKMRAIRL 144 (454)
T ss_pred CeEEEEEcCCCCCHHHH-HHHHHHHHHh-------cCCcEEEEECc-CCHHHHHHHHHHc
Confidence 45789999999999974 4444444432 24468888753 4455665554444
No 482
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=83.85 E-value=1.5 Score=43.01 Aligned_cols=35 Identities=23% Similarity=0.361 Sum_probs=24.3
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcc
Q 006824 264 DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAP 306 (630)
Q Consensus 264 d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~P 306 (630)
.++++|++|||||. +++-++.++... -..+++++|
T Consensus 15 r~viIG~sGSGKT~-li~~lL~~~~~~-------f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTT-LIKSLLYYLRHK-------FDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHH-HHHHHHHhhccc-------CCEEEEEec
Confidence 68999999999996 466666554322 244666667
No 483
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=83.75 E-value=2.6 Score=43.79 Aligned_cols=16 Identities=25% Similarity=0.358 Sum_probs=14.3
Q ss_pred CCEEEEeCCCChHHHH
Q 006824 263 RDIIGIAKTGSGKTAA 278 (630)
Q Consensus 263 ~d~l~~a~TGsGKT~~ 278 (630)
..+++.||+|+|||..
T Consensus 52 ~~~ll~GppG~GKT~l 67 (328)
T PRK00080 52 DHVLLYGPPGLGKTTL 67 (328)
T ss_pred CcEEEECCCCccHHHH
Confidence 5799999999999964
No 484
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=83.74 E-value=2.8 Score=41.21 Aligned_cols=33 Identities=15% Similarity=0.229 Sum_probs=28.3
Q ss_pred ceeEEEecchhhhhcCCcHHHHHHHHhhcCCCC
Q 006824 372 RVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDR 404 (630)
Q Consensus 372 ~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~ 404 (630)
.-+++|+||.=.+++......+..++..++...
T Consensus 156 ~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~ 188 (235)
T COG1122 156 GPEILLLDEPTAGLDPKGRRELLELLKKLKEEG 188 (235)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 467999999999999888888889988887664
No 485
>PHA00350 putative assembly protein
Probab=83.62 E-value=11 Score=40.13 Aligned_cols=17 Identities=24% Similarity=0.210 Sum_probs=14.0
Q ss_pred EEEEeCCCChHHHHHHH
Q 006824 265 IIGIAKTGSGKTAAFVL 281 (630)
Q Consensus 265 ~l~~a~TGsGKT~~~~l 281 (630)
.++.|..|||||+..+.
T Consensus 4 ~l~tG~pGSGKT~~aV~ 20 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVV 20 (399)
T ss_pred EEEecCCCCchhHHHHH
Confidence 47899999999976554
No 486
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=83.51 E-value=13 Score=40.57 Aligned_cols=16 Identities=25% Similarity=0.220 Sum_probs=13.6
Q ss_pred CEEEEeCCCChHHHHH
Q 006824 264 DIIGIAKTGSGKTAAF 279 (630)
Q Consensus 264 d~l~~a~TGsGKT~~~ 279 (630)
.+|+.||.|+|||.++
T Consensus 41 a~Lf~Gp~G~GKtt~A 56 (451)
T PRK06305 41 AYLFSGIRGTGKTTLA 56 (451)
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4789999999999753
No 487
>KOG1806 consensus DEAD box containing helicases [Replication, recombination and repair]
Probab=83.38 E-value=1.7 Score=50.07 Aligned_cols=73 Identities=15% Similarity=0.179 Sum_probs=55.3
Q ss_pred cCCCCCcHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHHHHHHHHHHHH
Q 006824 243 QGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (630)
Q Consensus 243 ~~~~~~~~~Q~~~i~~il~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 321 (630)
.+..+++|-|.+++-.-++-..+.+.+|+|+|||...+ -++.-++++ ...++++|++......+|..+.+.+.
T Consensus 734 ~n~v~ft~~qveai~sg~qpgltmvvgppgtgktd~av-qil~~lyhn-----~p~qrTlivthsnqaln~lfeKi~~~ 806 (1320)
T KOG1806|consen 734 KNQVKFTPTQVEAILSGMQPGLTMVVGPPGTGKTDVAV-QILSVLYHN-----SPNQRTLIVTHSNQALNQLFEKIMAL 806 (1320)
T ss_pred cchhccCHHHHHHHHhcCCCCceeeecCCCCCCcchhh-hhhhhhhhc-----CCCcceEEEEecccchhHHHHHHHhc
Confidence 45567899999999888888999999999999996533 233333332 23678999999988888887766654
No 488
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=83.23 E-value=1.8 Score=41.43 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=15.9
Q ss_pred EEEEeCCCChHHHHHHHHHHHHH
Q 006824 265 IIGIAKTGSGKTAAFVLPMIVHI 287 (630)
Q Consensus 265 ~l~~a~TGsGKT~~~~l~~l~~~ 287 (630)
+++++|||||||.. +..++.++
T Consensus 4 ilI~GptGSGKTTl-l~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTT-LAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHH-HHHHHHHh
Confidence 68999999999965 33344444
No 489
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=83.16 E-value=1.1 Score=45.06 Aligned_cols=44 Identities=25% Similarity=0.210 Sum_probs=27.6
Q ss_pred HcCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHH
Q 006824 260 LSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELA 311 (630)
Q Consensus 260 l~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La 311 (630)
..+.+++++|+||||||.. +-.++..+-.. ..+++++-.+.|+-
T Consensus 125 ~~~~~ili~G~tGSGKTT~-l~all~~i~~~-------~~~iv~iEd~~E~~ 168 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTL-LNALLEEIPPE-------DERIVTIEDPPELR 168 (270)
T ss_dssp HTTEEEEEEESTTSSHHHH-HHHHHHHCHTT-------TSEEEEEESSS-S-
T ss_pred ccceEEEEECCCccccchH-HHHHhhhcccc-------ccceEEecccccee
Confidence 4578999999999999964 34444443211 34567766665553
No 490
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.16 E-value=7.9 Score=43.87 Aligned_cols=42 Identities=7% Similarity=0.124 Sum_probs=24.2
Q ss_pred cCceeEEEecchhhhhcCCcHHHHHHHHhhcCCCCcEEEEeecc
Q 006824 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATM 413 (630)
Q Consensus 370 l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q~l~~SAT~ 413 (630)
.....++||||+|.|.... ...+...+...+.. -+++|.+|-
T Consensus 119 ~~~~KVvIIdea~~Ls~~a-~naLLK~LEepp~~-tifIL~tt~ 160 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQAA-FNAFLKTLEEPPSY-AIFILATTE 160 (614)
T ss_pred cCCcEEEEEECcccCCHHH-HHHHHHHHhCCCCC-eEEEEEeCC
Confidence 4578899999999975432 23344444443333 344455553
No 491
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=83.14 E-value=8.5 Score=45.45 Aligned_cols=16 Identities=38% Similarity=0.451 Sum_probs=14.4
Q ss_pred CCEEEEeCCCChHHHH
Q 006824 263 RDIIGIAKTGSGKTAA 278 (630)
Q Consensus 263 ~d~l~~a~TGsGKT~~ 278 (630)
.++++.||.|+|||.+
T Consensus 209 ~n~lLvG~pGvGKTal 224 (852)
T TIGR03345 209 NNPILTGEAGVGKTAV 224 (852)
T ss_pred CceeEECCCCCCHHHH
Confidence 5899999999999964
No 492
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=83.07 E-value=2.2 Score=45.98 Aligned_cols=68 Identities=16% Similarity=0.277 Sum_probs=54.5
Q ss_pred EEEEccchhhHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcC-Cc----ccC----CCCCCc
Q 006824 473 VLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VA----ARG----LDIKSI 539 (630)
Q Consensus 473 iLIF~~s~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~-~~----~~G----ldi~~v 539 (630)
.|||+||++-+..+.+.|... ++.+..|.|||.....++++++ ...|+|||. ++ ..+ =++..+
T Consensus 266 ~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATPGRlweli~e~n~~l~~~k~v 341 (731)
T KOG0347|consen 266 ALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATPGRLWELIEEDNTHLGNFKKV 341 (731)
T ss_pred eEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CCCEEEecchHHHHHHHhhhhhhhhhhhc
Confidence 799999999999999999754 8999999999999998888876 677999995 11 111 156677
Q ss_pred cEEEE
Q 006824 540 KSVVN 544 (630)
Q Consensus 540 ~~VI~ 544 (630)
+++|.
T Consensus 342 kcLVl 346 (731)
T KOG0347|consen 342 KCLVL 346 (731)
T ss_pred eEEEE
Confidence 77775
No 493
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=82.99 E-value=3.2 Score=43.28 Aligned_cols=64 Identities=19% Similarity=0.199 Sum_probs=39.1
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHH-cCCCEEEEeCCCChHHHHHHHHHHHHHhcCCcccccCCCeEEEEcccHHHH
Q 006824 237 MHAISKQGYEKPTSIQCQALPIIL-SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELA 311 (630)
Q Consensus 237 ~~~l~~~~~~~~~~~Q~~~i~~il-~g~d~l~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLil~Ptr~La 311 (630)
+..+.+.|+ +++.+.+.+..+. .+.+++++++||||||.. +-.++..+ . ...+++++-.+.||.
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTl-l~al~~~i-~-------~~~riv~iEd~~El~ 218 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTL-LSALLALV-A-------PDERIVLVEDAAELR 218 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH-HHHHHccC-C-------CCCcEEEECCcceec
Confidence 444455554 4567777776655 557999999999999963 22233222 1 133466666666663
No 494
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=82.84 E-value=1.6 Score=43.79 Aligned_cols=27 Identities=30% Similarity=0.316 Sum_probs=21.7
Q ss_pred HHHHHHHHcCCCEEEEeCCCChHHHHH
Q 006824 253 CQALPIILSGRDIIGIAKTGSGKTAAF 279 (630)
Q Consensus 253 ~~~i~~il~g~d~l~~a~TGsGKT~~~ 279 (630)
.+++..+..++++++.|++|+|||.++
T Consensus 12 ~~~l~~l~~g~~vLL~G~~GtGKT~lA 38 (262)
T TIGR02640 12 SRALRYLKSGYPVHLRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHHHhcCCeEEEEcCCCCCHHHHH
Confidence 344566678899999999999999653
No 495
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=82.76 E-value=9.4 Score=34.26 Aligned_cols=40 Identities=18% Similarity=0.288 Sum_probs=28.0
Q ss_pred cCceeEEEecchhhhhcCCcHHHHHHHHhhcCCCCcEEEEeec
Q 006824 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSAT 412 (630)
Q Consensus 370 l~~i~~lVvDEah~~~~~~~~~~v~~i~~~l~~~~q~l~~SAT 412 (630)
..+-.++++||.-.-++......+..++..+. . +++++.-
T Consensus 86 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~--~-til~~th 125 (144)
T cd03221 86 LENPNLLLLDEPTNHLDLESIEALEEALKEYP--G-TVILVSH 125 (144)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHcC--C-EEEEEEC
Confidence 45678999999998777766777777776663 3 5555443
No 496
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=82.71 E-value=2 Score=45.31 Aligned_cols=19 Identities=26% Similarity=0.239 Sum_probs=16.7
Q ss_pred HcCCCEEEEeCCCChHHHH
Q 006824 260 LSGRDIIGIAKTGSGKTAA 278 (630)
Q Consensus 260 l~g~d~l~~a~TGsGKT~~ 278 (630)
-.|+-+++.+|+|+|||..
T Consensus 166 g~Gq~~~IvG~~g~GKTtL 184 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVL 184 (415)
T ss_pred CCCCEEEEECCCCCChhHH
Confidence 3788899999999999964
No 497
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.66 E-value=8.7 Score=42.21 Aligned_cols=17 Identities=18% Similarity=0.315 Sum_probs=13.8
Q ss_pred cCceeEEEecchhhhhc
Q 006824 370 MSRVTYLVLDEADRMFD 386 (630)
Q Consensus 370 l~~i~~lVvDEah~~~~ 386 (630)
.....++||||||.|..
T Consensus 117 ~~~~KVvIIDEad~Lt~ 133 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTK 133 (486)
T ss_pred cCCeeEEEEEChhhcCH
Confidence 35678999999998753
No 498
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=82.60 E-value=5.5 Score=45.11 Aligned_cols=94 Identities=19% Similarity=0.191 Sum_probs=69.0
Q ss_pred EEcCCccccHHH-HHHhccCCCCCCCEEEEccchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEE
Q 006824 448 HVIPSDAEKLPW-LLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIA 526 (630)
Q Consensus 448 ~~~~~~~~k~~~-l~~~l~~~~~~~~iLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLva 526 (630)
...+....|... ++..+ ...+.+||.+|+..-+......|...|+.+..+|++++..++..++.....|..+||+.
T Consensus 33 v~~PTG~GKTl~y~lpal---~~~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~ 109 (591)
T TIGR01389 33 VVMPTGGGKSLCYQVPAL---LLKGLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYV 109 (591)
T ss_pred EEcCCCccHhHHHHHHHH---HcCCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEE
Confidence 344455555432 22222 23578999999999988888899999999999999999999999999999999999998
Q ss_pred cC-Ccc-----cCCCCCCccEEEE
Q 006824 527 TD-VAA-----RGLDIKSIKSVVN 544 (630)
Q Consensus 527 T~-~~~-----~Gldi~~v~~VI~ 544 (630)
|. .+. .-+....+..||.
T Consensus 110 tpe~l~~~~~~~~l~~~~l~~iVi 133 (591)
T TIGR01389 110 APERLEQDYFLNMLQRIPIALVAV 133 (591)
T ss_pred ChhHhcChHHHHHHhcCCCCEEEE
Confidence 83 222 1234445666664
No 499
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=82.57 E-value=6.2 Score=44.41 Aligned_cols=15 Identities=27% Similarity=0.366 Sum_probs=13.3
Q ss_pred CCEEEEeCCCChHHH
Q 006824 263 RDIIGIAKTGSGKTA 277 (630)
Q Consensus 263 ~d~l~~a~TGsGKT~ 277 (630)
+-+++|||.|.|||.
T Consensus 327 KilLL~GppGlGKTT 341 (877)
T KOG1969|consen 327 KILLLCGPPGLGKTT 341 (877)
T ss_pred ceEEeecCCCCChhH
Confidence 468999999999995
No 500
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=82.56 E-value=4 Score=46.44 Aligned_cols=71 Identities=18% Similarity=0.318 Sum_probs=52.1
Q ss_pred CCCEEEEccchhhHHHHHHHHHhC-----CCcEEEEeCCCCHHHHHHHHHHhhcCCceEEEEcC-----Cccc-CCCCCC
Q 006824 470 DGDVLVFASKKTTVDEIESQLAQK-----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-----VAAR-GLDIKS 538 (630)
Q Consensus 470 ~~~iLIF~~s~~~~~~l~~~L~~~-----~~~~~~ihg~~~~~~r~~~~~~F~~g~~~VLvaT~-----~~~~-Gldi~~ 538 (630)
..++||.||++.-+..++..|... ++.+..+||+.+.......+ + +...|+|+|. .+.+ .+++..
T Consensus 74 ~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l---~-~~~~IVVgTPgrl~d~l~r~~l~l~~ 149 (629)
T PRK11634 74 APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL---R-QGPQIVVGTPGRLLDHLKRGTLDLSK 149 (629)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHh---c-CCCCEEEECHHHHHHHHHcCCcchhh
Confidence 457999999999998887776542 68899999998765543332 3 3578999994 2223 478888
Q ss_pred ccEEEE
Q 006824 539 IKSVVN 544 (630)
Q Consensus 539 v~~VI~ 544 (630)
+.+||.
T Consensus 150 l~~lVl 155 (629)
T PRK11634 150 LSGLVL 155 (629)
T ss_pred ceEEEe
Confidence 888885
Done!