BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006825
(630 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 67/159 (42%), Gaps = 28/159 (17%)
Query: 449 CQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLL 508
Q + H+ S+W + FS DG+ +ASA +D + +W R G+LL+ GH + +
Sbjct: 337 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW-----NRNGQLLQTLT-GHSSSVRG 390
Query: 509 ANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLD 568
SP+ +++ D ++ R + ++L+ V F+ D+ I S
Sbjct: 391 VAFSPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVWGVAFSPDDQTIAS------ 443
Query: 569 DVLDXXXXXXXXXXXXXMDKTVRLWHLSSKTCLKIFSHS 607
DKTV+LW+ + + + HS
Sbjct: 444 ---------------ASDDKTVKLWNRNGQLLQTLTGHS 467
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Query: 449 CQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLE 496
Q + H+ S+W + FS DG+ +ASA +D + +W R G+LL+
Sbjct: 50 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW-----NRNGQLLQ 92
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Query: 449 CQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLE 496
Q + H+ S+W + FS DG+ +ASA +D + +W R G+LL+
Sbjct: 132 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW-----NRNGQLLQ 174
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Query: 449 CQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLE 496
Q + H+ S+W + FS DG+ +ASA +D + +W R G+LL+
Sbjct: 173 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW-----NRNGQLLQ 215
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 449 CQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLE 496
Q + H+ S+W + FS DG+ +ASA +D + +W R G+ L+
Sbjct: 296 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW-----NRNGQHLQ 338
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 449 CQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVW 483
Q + H+ S+W + FS DG+ +ASA D + +W
Sbjct: 542 LQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLW 576
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 5/45 (11%)
Query: 452 IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLE 496
++AH+ S+ + FS DG+ +ASA +D + +W R G+LL+
Sbjct: 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLW-----NRNGQLLQ 51
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 449 CQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLL 508
Q + H+ S+ + FS DG+ +ASA +D + +W R G+LL+ GH + +
Sbjct: 501 LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW-----NRNGQLLQTLT-GHSSSVWG 554
Query: 509 ANGSPEPTSLSPKHLD 524
SP+ +++ D
Sbjct: 555 VAFSPDGQTIASASSD 570
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 449 CQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLE 496
Q + H+ S+ + FS DG+ +ASA +D + +W R G+LL+
Sbjct: 91 LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW-----NRNGQLLQ 133
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 449 CQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLE 496
Q + H+ S+ + FS DG+ +ASA +D + +W R G+LL+
Sbjct: 214 LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW-----NRNGQLLQ 256
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 449 CQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLE 496
Q + H+ S+ + FS DG+ +ASA +D + +W R G+LL+
Sbjct: 460 LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW-----NRNGQLLQ 502
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 66/160 (41%), Gaps = 30/160 (18%)
Query: 449 CQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLL 508
Q + H+ S+ + F DG+ +ASA +D + +W R G+LL+ GH + +
Sbjct: 255 LQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLW-----NRNGQLLQTLT-GHSSSVWG 308
Query: 509 ANGSPEPTSLSPKHLDNHLE-KKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHL 567
SP+ +++ D ++ R G+ + ++L+ V F+ + I S
Sbjct: 309 VAFSPDGQTIASASDDKTVKLWNRNGQHL--QTLTGHSSSVWGVAFSPDGQTIAS----- 361
Query: 568 DDVLDXXXXXXXXXXXXXMDKTVRLWHLSSKTCLKIFSHS 607
DKTV+LW+ + + + HS
Sbjct: 362 ----------------ASDDKTVKLWNRNGQLLQTLTGHS 385
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVES 488
HNG +WS+ ++L G L+SAG+D + +W+ S
Sbjct: 303 HNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYS 336
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVES 488
HNG +WS+ ++L G L+SAG+D + +W+ S
Sbjct: 305 HNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYS 338
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVES 488
HNG +WS+ ++L G L+SAG+D + +W+ S
Sbjct: 305 HNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYS 338
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 454 AHNGSIWSIKFSLDGRYLASAGEDCVIHVWQV--VESERKGELLEKQEDGHLNML 506
AH+GS++ + +S DG +ASA D I +W V ++ E+ + + ED L ++
Sbjct: 237 AHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGII 291
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 461 SIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSP 520
S+ FSL GR L + D I+VW V++ R L GH N + SP+ T+
Sbjct: 289 SVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILF-----GHENRVSTLRVSPDGTAFCS 343
Query: 521 KHLDNHL 527
D+ L
Sbjct: 344 GSWDHTL 350
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 13/80 (16%)
Query: 414 SSATDDSQDVSFH-GQERVRVRQYGKSCKDLTALYK--------CQEIQAHNGSIWSIKF 464
+S T D + V +H QE + Y D LY+ C ++ H ++WS+ F
Sbjct: 147 NSHTQDVKHVVWHPSQELLASASY----DDTVKLYREEEDDWVCCATLEGHESTVWSLAF 202
Query: 465 SLDGRYLASAGEDCVIHVWQ 484
G+ LAS +D + +W+
Sbjct: 203 DPSGQRLASCSDDRTVRIWR 222
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 29/47 (61%)
Query: 444 TALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESER 490
T L C+ +Q H+G ++S+ ++ + ++ SA +D + VW + S++
Sbjct: 54 TDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQK 100
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 61/127 (48%), Gaps = 11/127 (8%)
Query: 437 GKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE-RKGELL 495
GKS + L + QE G I+++ + LD + A+ G D I VW V S+ + L
Sbjct: 236 GKSGEFLKYIEDDQE--PVQGGIFALSW-LDSQKFATVGADATIRVWDVTTSKCVQKWTL 292
Query: 496 EKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL 555
+KQ+ G+ + ++A G+ SLS LD L G K++S + + + AL
Sbjct: 293 DKQQLGNQQVGVVATGNGRIISLS---LDGTLNFYELGHDEVLKTISGHN----KGITAL 345
Query: 556 SDKPICS 562
+ P+ S
Sbjct: 346 TVNPLIS 352
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 61/127 (48%), Gaps = 11/127 (8%)
Query: 437 GKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE-RKGELL 495
GKS + L + QE G I+++ + LD + A+ G D I VW V S+ + L
Sbjct: 236 GKSGEFLKYIEDDQE--PVQGGIFALSW-LDSQKFATVGADATIRVWDVTTSKCVQKWTL 292
Query: 496 EKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL 555
+KQ+ G+ + ++A G+ SLS LD L G K++S + + + AL
Sbjct: 293 DKQQLGNQQVGVVATGNGRIISLS---LDGTLNFYELGHDEVLKTISGHN----KGITAL 345
Query: 556 SDKPICS 562
+ P+ S
Sbjct: 346 TVNPLIS 352
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 452 IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGH 502
+ H ++ S+KFS +G +LAS+ D +I +W + + EK GH
Sbjct: 43 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----FEKTISGH 88
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 452 IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGH 502
+ H ++ S+KFS +G +LAS+ D +I +W + + EK GH
Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----FEKTISGH 86
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 452 IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGH 502
+ H ++ S+KFS +G +LAS+ D +I +W + + EK GH
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----FEKTISGH 70
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 452 IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGH 502
+ H ++ S+KFS +G +LAS+ D +I +W + + EK GH
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----FEKTISGH 70
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 452 IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGH 502
+ H ++ S+KFS +G +LAS+ D +I +W + + EK GH
Sbjct: 24 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----FEKTISGH 69
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 452 IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGH 502
+ H ++ S+KFS +G +LAS+ D +I +W + + EK GH
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----FEKTISGH 70
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 452 IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGH 502
+ H ++ S+KFS +G +LAS+ D +I +W + + EK GH
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----FEKTISGH 67
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 452 IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGH 502
+ H ++ S+KFS +G +LAS+ D +I +W + + EK GH
Sbjct: 36 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----FEKTISGH 81
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 452 IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGH 502
+ H ++ S+KFS +G +LAS+ D +I +W + + EK GH
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----FEKTISGH 64
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 452 IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGH 502
+ H ++ S+KFS +G +LAS+ D +I +W + + EK GH
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----FEKTISGH 67
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 452 IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGH 502
+ H ++ S+KFS +G +LAS+ D +I +W + + EK GH
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----FEKTISGH 67
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 452 IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGH 502
+ H ++ S+KFS +G +LAS+ D +I +W + + EK GH
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----FEKTISGH 64
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 452 IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGH 502
+ H ++ S+KFS +G +LAS+ D +I +W + + EK GH
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----FEKTISGH 67
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 452 IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGH 502
+ H ++ S+KFS +G +LAS+ D +I +W + + EK GH
Sbjct: 18 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----FEKTISGH 63
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 452 IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGH 502
+ H ++ S+KFS +G +LAS+ D +I +W + + EK GH
Sbjct: 20 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----FEKTISGH 65
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 452 IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGH 502
+ H ++ S+KFS +G +LAS+ D +I +W + + EK GH
Sbjct: 15 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----FEKTISGH 60
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELL 495
E++ HNG + FSLDG LA+ ++ I +W V + G+LL
Sbjct: 1128 HELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSD----GQLL 1169
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVW 483
H ++ I+F+ DG+ L S+ ED VI VW
Sbjct: 1009 HKKAVRHIQFTADGKTLISSSEDSVIQVW 1037
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 32/69 (46%)
Query: 431 VRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESER 490
+ + QY ++ + K + + H + + FS DG +A +D I VW+ + +
Sbjct: 864 IALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCK 923
Query: 491 KGELLEKQE 499
++ KQE
Sbjct: 924 NSAIVLKQE 932
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELL 495
E++ HNG + FSLDG LA+ ++ I +W V + G+LL
Sbjct: 1121 HELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSD----GQLL 1162
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVW 483
H ++ I+F+ DG+ L S+ ED VI VW
Sbjct: 1002 HKKAVRHIQFTADGKTLISSSEDSVIQVW 1030
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 32/69 (46%)
Query: 431 VRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESER 490
+ + QY ++ + K + + H + + FS DG +A +D I VW+ + +
Sbjct: 857 IALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCK 916
Query: 491 KGELLEKQE 499
++ KQE
Sbjct: 917 NSAIVLKQE 925
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Query: 442 DLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG 501
DL A + H + S+ FSLD R + SA D I +W + E K + E E G
Sbjct: 458 DLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTL-GECKYTISEGGE-G 515
Query: 502 HLNMLLLANGSP---EPTSLS 519
H + + SP +PT +S
Sbjct: 516 HRDWVSCVRFSPNTLQPTIVS 536
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 452 IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESER 490
+ H G + ++ S DG AS G+D V+ +W + E ++
Sbjct: 557 LAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKK 595
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 10/120 (8%)
Query: 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHL----NMLLLAN 510
HN +I ++ S DG +ASAG+D I +W + + L + E L N LA
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAA 254
Query: 511 GSPEPT---SLSPKHLDNHLEKKRRGRSINRK--SLSLDHMVVPETVFA-LSDKPICSFQ 564
+ SL P++L + L + G S + ++SL +T+FA +D I +Q
Sbjct: 255 ATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 459 IWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQE 499
I S+ FS DG++LA+ ED +I +W +E+ + +L+ E
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWD-IENRKIVMILQGHE 165
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 9/109 (8%)
Query: 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHL----NMLLLAN 510
HN +I ++ S DG +ASAG+D I +W + + L + E L N LA
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVFSLAFSPNRYWLAA 254
Query: 511 GSP---EPTSLSPKHLDNHLEKKRRG--RSINRKSLSLDHMVVPETVFA 554
+ + SL P++L + L + G ++ ++SL +T+FA
Sbjct: 255 ATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFA 303
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 444 TALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE 489
A + + H+ + ++++ DGR+LAS G D +++VW E
Sbjct: 229 VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE 274
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 423 VSFHG--QERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVI 480
+S HG Q ++ + +Y + K E++ H + S+ S DG +ASA D +
Sbjct: 347 ISGHGFAQNQLVIWKY-------PTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETL 399
Query: 481 HVWQVVE 487
+W+ E
Sbjct: 400 RLWRCFE 406
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 10/120 (8%)
Query: 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHL----NMLLLAN 510
HN +I ++ S DG +ASAG+D I +W + + L + E L N LA
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAA 254
Query: 511 GSP---EPTSLSPKHLDNHLEKKRRG--RSINRKSLSLDHMVVPETVFA-LSDKPICSFQ 564
+ + SL P++L + L + G ++ ++SL +T+FA +D I +Q
Sbjct: 255 ATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 10/120 (8%)
Query: 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHL----NMLLLAN 510
HN +I ++ S DG +ASAG+D I +W + + L + E L N LA
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAA 254
Query: 511 GSPEPT---SLSPKHLDNHLEKKRRG--RSINRKSLSLDHMVVPETVFA-LSDKPICSFQ 564
+ SL P++L + L + G ++ ++SL +T+FA +D I +Q
Sbjct: 255 ATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 452 IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGH 502
+ H ++ S+KFS +G +LA++ D +I +W + + EK GH
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGK-----FEKTISGH 67
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 444 TALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE 489
A + + H+ + ++++ DGR+LAS G D +++VW E
Sbjct: 218 VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE 263
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 423 VSFHG--QERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVI 480
+S HG Q ++ + +Y + K E++ H + S+ S DG +ASA D +
Sbjct: 336 ISGHGFAQNQLVIWKY-------PTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETL 388
Query: 481 HVWQVVE 487
+W+ E
Sbjct: 389 RLWRCFE 395
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 9/109 (8%)
Query: 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHL----NMLLLAN 510
HN +I ++ S DG +ASAG+D I +W + + L + E L N LA
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAA 254
Query: 511 GSP---EPTSLSPKHLDNHLEKKRRG--RSINRKSLSLDHMVVPETVFA 554
+ + SL P++L + L + G ++ ++SL +T+FA
Sbjct: 255 ATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFA 303
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 9/109 (8%)
Query: 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHL----NMLLLAN 510
HN +I ++ S DG +ASAG+D I +W + + L + E L N LA
Sbjct: 189 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAA 248
Query: 511 GSP---EPTSLSPKHLDNHLEKKRRG--RSINRKSLSLDHMVVPETVFA 554
+ + SL P++L + L + G ++ ++SL +T+FA
Sbjct: 249 ATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFA 297
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 9/86 (10%)
Query: 452 IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGE----LLEKQED-----GH 502
I+ H + + +S DG YLA+ D + +W+ ES + E L E +D H
Sbjct: 103 IEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWH 162
Query: 503 LNMLLLANGSPEPTSLSPKHLDNHLE 528
+ LLA+ S + T K D+ E
Sbjct: 163 PSEALLASSSYDDTVRIWKDYDDDWE 188
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVW 483
H ++W I+F+ D + L S+ +D I VW
Sbjct: 1008 HKKTVWHIQFTADEKTLISSSDDAEIQVW 1036
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 446 LYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELL 495
L E++ HNG + FS+D LA+ ++ I +W V GELL
Sbjct: 1123 LLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNV----SNGELL 1168
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 7/74 (9%)
Query: 448 KCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHL---- 503
K EI+AH + FS D R++A+ D + +W + E E E +
Sbjct: 655 KLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFT 714
Query: 504 ---NMLLLANGSPE 514
+ LLLA GS +
Sbjct: 715 NSSHHLLLATGSSD 728
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 444 TALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE 489
A + + H+ + ++++ DGR+LAS G D +++VW E
Sbjct: 138 VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE 183
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 448 KCQ-EIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG-HLNM 505
+CQ + H + S+ FS D R + S G D + VW V KGE + G H +
Sbjct: 100 QCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNV-----KGECMHTLSRGAHTDW 154
Query: 506 LLLANGSP 513
+ SP
Sbjct: 155 VSCVRFSP 162
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 459 IWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSL 518
I SI +S DG+YLAS D +I+++ + G+LL E GH + SP+ L
Sbjct: 167 ILSIAYSPDGKYLASGAIDGIINIFDIA----TGKLLHTLE-GHAMPIRSLTFSPDSQLL 221
Query: 519 SPKHLDNHLE 528
D +++
Sbjct: 222 VTASDDGYIK 231
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,913,673
Number of Sequences: 62578
Number of extensions: 478755
Number of successful extensions: 1235
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 935
Number of HSP's gapped (non-prelim): 310
length of query: 630
length of database: 14,973,337
effective HSP length: 105
effective length of query: 525
effective length of database: 8,402,647
effective search space: 4411389675
effective search space used: 4411389675
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)