Query 006825
Match_columns 630
No_of_seqs 443 out of 3682
Neff 6.5
Searched_HMMs 46136
Date Thu Mar 28 15:02:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006825.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006825hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 2E-38 4.3E-43 326.8 23.3 276 315-629 138-474 (480)
2 KOG0271 Notchless-like WD40 re 100.0 7.3E-38 1.6E-42 322.6 22.8 259 333-627 109-430 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 6.9E-37 1.5E-41 318.9 23.4 257 295-594 181-458 (459)
4 KOG0283 WD40 repeat-containing 100.0 8.8E-36 1.9E-40 332.2 18.5 316 298-627 106-431 (712)
5 KOG0272 U4/U6 small nuclear ri 100.0 7.3E-35 1.6E-39 303.8 20.4 261 333-628 169-452 (459)
6 KOG0263 Transcription initiati 100.0 2.4E-32 5.3E-37 302.7 26.3 282 261-626 384-705 (707)
7 KOG0295 WD40 repeat-containing 100.0 6.9E-32 1.5E-36 277.5 23.2 263 330-627 99-397 (406)
8 KOG0286 G-protein beta subunit 100.0 1.3E-30 2.8E-35 262.0 29.9 260 333-627 49-336 (343)
9 KOG0279 G protein beta subunit 100.0 6.6E-31 1.4E-35 262.8 26.3 259 333-628 9-305 (315)
10 KOG0319 WD40-repeat-containing 100.0 9.2E-30 2E-34 279.8 28.3 275 317-627 306-610 (775)
11 KOG0279 G protein beta subunit 100.0 3.8E-29 8.1E-34 250.3 25.6 234 321-596 50-313 (315)
12 KOG0645 WD40 repeat protein [G 100.0 4E-29 8.8E-34 249.2 25.3 259 330-596 5-311 (312)
13 KOG0319 WD40-repeat-containing 100.0 3.2E-29 7E-34 275.6 26.1 320 261-626 68-567 (775)
14 KOG0318 WD40 repeat stress pro 100.0 8.8E-28 1.9E-32 256.2 33.8 339 262-627 66-551 (603)
15 KOG0286 G-protein beta subunit 100.0 1.1E-28 2.4E-33 248.1 24.8 235 262-594 104-343 (343)
16 KOG1408 WD40 repeat protein [F 100.0 2.2E-29 4.7E-34 274.7 20.4 310 175-597 386-714 (1080)
17 KOG0266 WD40 repeat-containing 100.0 2.8E-28 6E-33 270.4 28.2 229 333-625 197-441 (456)
18 KOG0318 WD40 repeat stress pro 100.0 8E-27 1.7E-31 249.0 34.2 323 284-624 13-381 (603)
19 KOG0285 Pleiotropic regulator 100.0 5E-28 1.1E-32 248.4 24.0 259 333-627 145-430 (460)
20 KOG0273 Beta-transducin family 100.0 2.2E-27 4.8E-32 250.6 27.2 256 261-624 241-511 (524)
21 KOG0315 G-protein beta subunit 100.0 1.9E-27 4E-32 234.9 24.8 251 350-628 12-280 (311)
22 KOG0295 WD40 repeat-containing 100.0 7.6E-28 1.6E-32 247.8 20.9 251 304-595 121-405 (406)
23 KOG0266 WD40 repeat-containing 100.0 4.8E-27 1E-31 260.5 28.4 232 333-627 152-400 (456)
24 cd00200 WD40 WD40 domain, foun 100.0 4E-26 8.6E-31 225.0 31.5 260 333-627 3-282 (289)
25 KOG0291 WD40-repeat-containing 100.0 2.5E-26 5.5E-31 253.0 32.5 283 333-627 139-541 (893)
26 KOG0315 G-protein beta subunit 100.0 2.1E-26 4.5E-31 227.6 28.5 271 308-614 15-307 (311)
27 KOG0263 Transcription initiati 100.0 1.3E-27 2.7E-32 265.3 22.0 257 333-628 372-641 (707)
28 KOG0281 Beta-TrCP (transducin 100.0 2.4E-28 5.1E-33 249.8 14.8 249 315-600 218-481 (499)
29 KOG0276 Vesicle coat complex C 100.0 1.3E-27 2.8E-32 258.6 21.0 259 333-625 7-288 (794)
30 KOG0313 Microtubule binding pr 100.0 3.1E-27 6.6E-32 244.3 22.8 262 333-627 99-409 (423)
31 KOG0296 Angio-associated migra 100.0 2.5E-26 5.5E-31 236.7 27.9 283 332-628 57-390 (399)
32 KOG0292 Vesicle coat complex C 100.0 4.5E-27 9.7E-32 261.7 22.8 265 334-625 4-311 (1202)
33 KOG0281 Beta-TrCP (transducin 99.9 9.8E-28 2.1E-32 245.3 12.8 248 338-624 196-466 (499)
34 cd00200 WD40 WD40 domain, foun 99.9 3.7E-25 8E-30 218.2 29.1 227 333-594 45-289 (289)
35 KOG0293 WD40 repeat-containing 99.9 3.1E-26 6.7E-31 238.7 21.2 263 261-597 230-514 (519)
36 KOG0278 Serine/threonine kinas 99.9 3.4E-26 7.4E-31 226.0 18.8 249 308-601 34-302 (334)
37 KOG0265 U5 snRNP-specific prot 99.9 2.2E-25 4.8E-30 225.1 23.5 231 332-593 83-335 (338)
38 KOG0274 Cdc4 and related F-box 99.9 2.9E-25 6.3E-30 248.9 26.3 233 316-623 230-470 (537)
39 PLN00181 protein SPA1-RELATED; 99.9 1.6E-24 3.4E-29 255.5 33.5 260 260-595 488-792 (793)
40 KOG0285 Pleiotropic regulator 99.9 1.3E-25 2.8E-30 230.8 18.7 198 370-630 142-343 (460)
41 KOG0265 U5 snRNP-specific prot 99.9 8.1E-25 1.8E-29 221.0 24.0 265 332-627 40-329 (338)
42 KOG0284 Polyadenylation factor 99.9 4.5E-26 9.7E-31 237.4 15.3 253 341-628 98-372 (464)
43 KOG0291 WD40-repeat-containing 99.9 9E-24 2E-28 233.0 29.9 285 307-605 313-621 (893)
44 PTZ00421 coronin; Provisional 99.9 2.2E-23 4.8E-28 232.7 32.1 232 318-614 56-310 (493)
45 KOG0273 Beta-transducin family 99.9 3.2E-24 7E-29 226.8 23.6 265 329-628 168-474 (524)
46 KOG0274 Cdc4 and related F-box 99.9 5.2E-24 1.1E-28 238.9 25.1 244 286-604 223-490 (537)
47 KOG0316 Conserved WD40 repeat- 99.9 8.9E-24 1.9E-28 207.6 23.4 257 331-624 9-288 (307)
48 KOG0284 Polyadenylation factor 99.9 8.1E-25 1.8E-29 228.0 16.8 264 288-595 95-379 (464)
49 PLN00181 protein SPA1-RELATED; 99.9 1.7E-22 3.6E-27 238.4 37.2 273 291-627 485-784 (793)
50 KOG0282 mRNA splicing factor [ 99.9 6.1E-25 1.3E-29 233.0 14.0 261 332-626 207-495 (503)
51 KOG0645 WD40 repeat protein [G 99.9 2.7E-23 5.9E-28 207.6 24.8 214 371-614 6-240 (312)
52 PTZ00420 coronin; Provisional 99.9 2.1E-22 4.7E-27 226.8 34.1 248 289-614 38-313 (568)
53 KOG0301 Phospholipase A2-activ 99.9 2.5E-23 5.4E-28 228.1 23.2 246 333-621 8-274 (745)
54 KOG0306 WD40-repeat-containing 99.9 4.3E-23 9.2E-28 227.6 25.0 260 334-627 368-655 (888)
55 KOG1407 WD40 repeat protein [F 99.9 8.3E-23 1.8E-27 203.3 23.4 252 259-588 24-294 (313)
56 KOG0293 WD40 repeat-containing 99.9 3.6E-23 7.7E-28 215.9 20.7 267 325-627 210-504 (519)
57 KOG0278 Serine/threonine kinas 99.9 2.7E-23 5.9E-28 205.5 18.3 258 333-627 8-288 (334)
58 KOG0300 WD40 repeat-containing 99.9 5.9E-23 1.3E-27 208.4 20.3 239 333-614 142-405 (481)
59 KOG0643 Translation initiation 99.9 1.1E-22 2.4E-27 203.0 21.0 255 316-597 34-318 (327)
60 KOG0647 mRNA export protein (c 99.9 8.3E-23 1.8E-27 206.7 20.4 248 333-627 21-314 (347)
61 KOG0283 WD40 repeat-containing 99.9 1.2E-22 2.6E-27 227.4 22.9 262 260-597 272-577 (712)
62 KOG0310 Conserved WD40 repeat- 99.9 4E-22 8.7E-27 211.9 24.2 248 339-625 26-298 (487)
63 KOG0275 Conserved WD40 repeat- 99.9 6.8E-23 1.5E-27 208.3 17.3 271 259-624 217-497 (508)
64 KOG0313 Microtubule binding pr 99.9 4.2E-22 9.1E-27 206.5 22.3 245 312-596 124-418 (423)
65 KOG0305 Anaphase promoting com 99.9 7.1E-22 1.5E-26 216.1 24.7 245 312-598 195-463 (484)
66 KOG0296 Angio-associated migra 99.9 1.2E-21 2.5E-26 202.4 24.2 245 315-596 87-398 (399)
67 KOG0299 U3 snoRNP-associated p 99.9 8E-22 1.7E-26 208.4 23.3 270 332-624 135-443 (479)
68 KOG0292 Vesicle coat complex C 99.9 3.9E-22 8.6E-27 222.6 22.0 247 316-596 33-321 (1202)
69 PTZ00420 coronin; Provisional 99.9 2.6E-21 5.7E-26 218.1 28.1 215 353-627 49-284 (568)
70 KOG0641 WD40 repeat protein [G 99.9 1.7E-20 3.8E-25 183.4 28.4 263 335-627 28-340 (350)
71 PTZ00421 coronin; Provisional 99.9 6.5E-21 1.4E-25 212.9 29.1 217 350-625 34-278 (493)
72 KOG0276 Vesicle coat complex C 99.9 9.5E-22 2.1E-26 213.4 21.6 204 317-534 38-258 (794)
73 KOG0301 Phospholipase A2-activ 99.9 2.8E-21 6.1E-26 212.1 23.7 247 305-596 27-288 (745)
74 KOG0277 Peroxisomal targeting 99.9 1.6E-21 3.4E-26 193.6 19.8 225 340-627 61-300 (311)
75 KOG0316 Conserved WD40 repeat- 99.9 4.6E-21 9.9E-26 188.6 22.4 239 314-595 39-298 (307)
76 KOG0282 mRNA splicing factor [ 99.9 7.9E-22 1.7E-26 209.5 18.5 255 300-594 226-503 (503)
77 KOG0275 Conserved WD40 repeat- 99.9 6.5E-23 1.4E-27 208.4 9.6 185 374-614 207-399 (508)
78 KOG0308 Conserved WD40 repeat- 99.9 6.2E-22 1.3E-26 215.9 16.7 221 350-627 39-276 (735)
79 KOG0277 Peroxisomal targeting 99.9 9.4E-22 2E-26 195.2 16.5 215 312-595 82-308 (311)
80 KOG0306 WD40-repeat-containing 99.9 7.7E-21 1.7E-25 209.9 24.2 244 315-600 395-668 (888)
81 KOG0289 mRNA splicing factor [ 99.9 1.7E-20 3.8E-25 197.0 22.7 245 315-595 242-505 (506)
82 KOG0267 Microtubule severing p 99.9 3.6E-22 7.8E-27 219.7 10.3 235 330-628 19-260 (825)
83 KOG1446 Histone H3 (Lys4) meth 99.9 2.2E-19 4.7E-24 183.2 28.2 261 254-596 13-303 (311)
84 KOG0772 Uncharacterized conser 99.9 1.3E-20 2.9E-25 201.1 19.8 267 333-625 161-476 (641)
85 KOG0264 Nucleosome remodeling 99.9 3.8E-20 8.3E-25 195.7 22.6 218 333-596 171-404 (422)
86 KOG0294 WD40 repeat-containing 99.9 4.1E-20 8.8E-25 188.2 21.2 239 325-627 29-272 (362)
87 KOG0973 Histone transcription 99.9 7E-20 1.5E-24 209.7 25.2 257 335-627 8-346 (942)
88 KOG0973 Histone transcription 99.9 2.8E-20 6E-25 213.0 21.7 250 261-598 75-357 (942)
89 KOG0646 WD40 repeat protein [G 99.9 4E-20 8.7E-25 195.9 21.2 286 288-617 15-330 (476)
90 KOG1446 Histone H3 (Lys4) meth 99.9 5.2E-19 1.1E-23 180.4 28.3 255 338-626 13-295 (311)
91 KOG0308 Conserved WD40 repeat- 99.8 3E-20 6.4E-25 202.9 18.4 246 308-614 42-304 (735)
92 KOG0289 mRNA splicing factor [ 99.8 1.2E-19 2.6E-24 190.8 21.7 224 340-625 220-451 (506)
93 KOG1407 WD40 repeat protein [F 99.8 1.7E-19 3.6E-24 179.9 21.3 236 333-626 14-292 (313)
94 KOG0643 Translation initiation 99.8 8.2E-19 1.8E-23 175.4 24.2 229 334-627 5-252 (327)
95 KOG0640 mRNA cleavage stimulat 99.8 7E-20 1.5E-24 185.9 16.7 237 332-627 165-417 (430)
96 KOG0300 WD40 repeat-containing 99.8 3.2E-19 6.9E-24 181.4 21.0 252 305-597 162-477 (481)
97 KOG0268 Sof1-like rRNA process 99.8 4.1E-20 8.9E-25 190.8 13.8 257 333-629 60-339 (433)
98 KOG1539 WD repeat protein [Gen 99.8 8.4E-18 1.8E-22 188.0 32.6 338 287-627 178-638 (910)
99 KOG0640 mRNA cleavage stimulat 99.8 1.8E-19 3.8E-24 183.0 17.1 214 333-605 106-344 (430)
100 KOG0288 WD40 repeat protein Ti 99.8 1.6E-19 3.5E-24 188.9 16.7 253 334-625 170-450 (459)
101 KOG0288 WD40 repeat protein Ti 99.8 2.7E-19 5.9E-24 187.3 18.1 240 316-594 199-459 (459)
102 KOG0305 Anaphase promoting com 99.8 1.9E-18 4.2E-23 189.3 25.5 236 357-627 196-452 (484)
103 KOG0264 Nucleosome remodeling 99.8 4.9E-19 1.1E-23 187.4 19.5 238 333-628 118-396 (422)
104 KOG0310 Conserved WD40 repeat- 99.8 2.9E-18 6.4E-23 182.7 22.9 227 299-597 78-310 (487)
105 KOG1036 Mitotic spindle checkp 99.8 5.3E-18 1.2E-22 172.5 23.3 256 338-626 12-294 (323)
106 KOG0299 U3 snoRNP-associated p 99.8 2.5E-18 5.4E-23 182.1 21.2 220 373-626 136-400 (479)
107 KOG0321 WD40 repeat-containing 99.8 1.1E-18 2.4E-23 190.4 18.5 238 332-599 93-394 (720)
108 KOG1063 RNA polymerase II elon 99.8 2.8E-18 6E-23 188.7 21.0 256 335-614 263-671 (764)
109 KOG0772 Uncharacterized conser 99.8 1E-18 2.2E-23 186.8 17.2 239 369-627 157-430 (641)
110 KOG0267 Microtubule severing p 99.8 1.1E-19 2.4E-24 200.2 10.0 191 333-587 64-259 (825)
111 KOG1332 Vesicle coat complex C 99.8 1E-18 2.2E-23 172.9 15.4 232 336-627 8-277 (299)
112 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 1.5E-16 3.2E-21 162.4 31.9 261 315-614 12-297 (300)
113 KOG1408 WD40 repeat protein [F 99.8 2.1E-17 4.6E-22 181.6 25.5 279 316-624 348-701 (1080)
114 KOG4283 Transcription-coupled 99.8 5.6E-18 1.2E-22 171.2 19.4 226 336-595 98-364 (397)
115 KOG0639 Transducin-like enhanc 99.8 2.8E-18 6.1E-23 182.7 17.6 257 335-627 415-695 (705)
116 KOG2096 WD40 repeat protein [G 99.8 1.4E-17 3E-22 169.9 21.4 226 374-626 81-351 (420)
117 KOG0302 Ribosome Assembly prot 99.8 4.5E-18 9.8E-23 176.5 18.2 205 333-596 145-378 (440)
118 KOG0269 WD40 repeat-containing 99.8 1.8E-18 3.9E-23 192.0 16.3 204 348-614 100-316 (839)
119 KOG0269 WD40 repeat-containing 99.8 1.2E-18 2.6E-23 193.5 14.3 204 333-597 127-341 (839)
120 KOG1332 Vesicle coat complex C 99.8 7.4E-18 1.6E-22 166.9 18.1 238 301-596 23-286 (299)
121 KOG0641 WD40 repeat protein [G 99.8 7E-17 1.5E-21 158.2 24.5 229 332-595 82-348 (350)
122 KOG2096 WD40 repeat protein [G 99.8 2.8E-17 6E-22 167.7 22.0 271 332-627 79-394 (420)
123 KOG0294 WD40 repeat-containing 99.8 4.6E-17 9.9E-22 166.1 23.3 226 316-614 65-304 (362)
124 KOG0302 Ribosome Assembly prot 99.7 9.1E-17 2E-21 167.0 19.3 264 290-594 152-436 (440)
125 KOG2445 Nuclear pore complex c 99.7 6.9E-16 1.5E-20 157.1 21.8 268 336-609 10-334 (361)
126 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 4.8E-15 1E-19 151.2 28.1 235 351-624 4-266 (300)
127 KOG1274 WD40 repeat protein [G 99.7 3.4E-15 7.3E-20 168.9 28.2 256 290-614 14-277 (933)
128 KOG1063 RNA polymerase II elon 99.7 6.8E-16 1.5E-20 170.1 22.0 275 332-627 184-639 (764)
129 KOG0270 WD40 repeat-containing 99.7 1.2E-16 2.7E-21 168.8 15.5 244 285-601 196-454 (463)
130 KOG2919 Guanine nucleotide-bin 99.7 1E-15 2.2E-20 156.7 20.4 215 350-626 125-360 (406)
131 KOG2048 WD40 repeat protein [G 99.7 1.1E-14 2.3E-19 160.6 27.8 266 260-626 30-309 (691)
132 KOG2445 Nuclear pore complex c 99.7 4.2E-15 9.1E-20 151.5 21.7 220 377-627 10-309 (361)
133 KOG0642 Cell-cycle nuclear pro 99.7 7.8E-16 1.7E-20 166.7 16.8 215 334-605 289-570 (577)
134 KOG0650 WD40 repeat nucleolar 99.7 2.1E-15 4.5E-20 164.0 19.7 258 333-627 394-726 (733)
135 KOG4283 Transcription-coupled 99.7 1.4E-15 3E-20 154.0 16.8 205 380-625 24-265 (397)
136 KOG0644 Uncharacterized conser 99.7 1.6E-16 3.4E-21 177.5 9.2 253 330-623 181-455 (1113)
137 COG2319 FOG: WD40 repeat [Gene 99.7 4.2E-13 9.2E-18 137.6 34.0 230 316-614 89-335 (466)
138 KOG0270 WD40 repeat-containing 99.7 2.1E-15 4.6E-20 159.5 16.9 204 350-600 194-408 (463)
139 KOG0268 Sof1-like rRNA process 99.6 1.6E-15 3.5E-20 157.1 14.4 232 332-602 102-351 (433)
140 KOG4328 WD40 protein [Function 99.6 1.3E-14 2.8E-19 154.1 20.6 268 333-626 180-484 (498)
141 KOG2106 Uncharacterized conser 99.6 1E-13 2.2E-18 148.6 27.4 263 333-628 148-469 (626)
142 KOG2055 WD40 repeat protein [G 99.6 2.6E-14 5.5E-19 152.0 21.8 259 339-625 213-501 (514)
143 KOG0303 Actin-binding protein 99.6 3.7E-14 8E-19 148.4 21.6 229 293-599 48-297 (472)
144 KOG2106 Uncharacterized conser 99.6 4.6E-13 1E-17 143.6 30.0 266 317-625 225-510 (626)
145 COG2319 FOG: WD40 repeat [Gene 99.6 6.7E-13 1.4E-17 136.2 29.5 232 334-626 60-304 (466)
146 KOG0647 mRNA export protein (c 99.6 7.7E-14 1.7E-18 142.0 21.4 218 334-587 67-315 (347)
147 KOG1274 WD40 repeat protein [G 99.6 1E-13 2.2E-18 157.2 24.4 220 375-627 8-253 (933)
148 KOG0646 WD40 repeat protein [G 99.6 2.3E-14 5.1E-19 152.5 18.2 223 351-626 10-237 (476)
149 KOG2048 WD40 repeat protein [G 99.6 1.7E-13 3.6E-18 151.3 25.2 223 341-625 27-264 (691)
150 KOG0639 Transducin-like enhanc 99.6 1.1E-14 2.3E-19 155.8 15.4 224 297-595 473-703 (705)
151 KOG0307 Vesicle coat complex C 99.6 8.9E-15 1.9E-19 168.9 15.2 209 350-614 82-303 (1049)
152 KOG1538 Uncharacterized conser 99.6 6.4E-14 1.4E-18 153.5 20.9 259 294-597 14-294 (1081)
153 KOG4378 Nuclear protein COP1 [ 99.6 4E-14 8.7E-19 151.3 18.7 208 341-583 84-309 (673)
154 KOG1009 Chromatin assembly com 99.6 8.9E-14 1.9E-18 146.0 19.3 252 340-627 14-363 (434)
155 KOG1273 WD40 repeat protein [G 99.6 2.1E-13 4.5E-18 139.5 20.4 263 261-597 29-323 (405)
156 KOG1007 WD repeat protein TSSC 99.6 2.3E-13 5E-18 137.8 19.8 237 333-627 57-352 (370)
157 KOG1538 Uncharacterized conser 99.6 2E-13 4.2E-18 149.8 19.7 247 341-627 14-284 (1081)
158 KOG1034 Transcriptional repres 99.5 1.3E-13 2.9E-18 141.6 15.7 207 348-600 105-341 (385)
159 KOG1036 Mitotic spindle checkp 99.5 2E-12 4.3E-17 132.2 23.4 253 295-586 19-294 (323)
160 KOG0642 Cell-cycle nuclear pro 99.5 1.7E-13 3.8E-18 148.7 16.1 205 422-627 307-552 (577)
161 KOG0650 WD40 repeat nucleolar 99.5 3.8E-13 8.2E-18 146.6 18.6 208 357-593 496-732 (733)
162 KOG4328 WD40 protein [Function 99.5 6.7E-13 1.4E-17 141.2 19.5 254 316-596 212-495 (498)
163 KOG1334 WD40 repeat protein [G 99.5 5.6E-14 1.2E-18 150.2 11.2 281 332-627 135-457 (559)
164 KOG1034 Transcriptional repres 99.5 2.1E-13 4.5E-18 140.2 14.5 247 288-596 89-383 (385)
165 KOG1539 WD repeat protein [Gen 99.5 4.1E-12 9E-17 142.9 26.0 271 316-626 184-513 (910)
166 KOG0303 Actin-binding protein 99.5 8.7E-14 1.9E-18 145.6 11.9 134 451-608 76-216 (472)
167 KOG0322 G-protein beta subunit 99.5 1.4E-13 3E-18 138.1 12.3 241 330-595 5-322 (323)
168 KOG4378 Nuclear protein COP1 [ 99.5 5.4E-13 1.2E-17 142.8 17.2 170 424-625 94-269 (673)
169 KOG1007 WD repeat protein TSSC 99.5 7.4E-13 1.6E-17 134.2 16.4 238 318-596 101-361 (370)
170 PRK01742 tolB translocation pr 99.5 7E-12 1.5E-16 138.4 23.9 224 316-617 186-426 (429)
171 KOG0290 Conserved WD40 repeat- 99.5 2.1E-12 4.5E-17 131.1 17.3 235 366-627 82-359 (364)
172 KOG0771 Prolactin regulatory e 99.5 1E-12 2.2E-17 138.8 15.6 173 425-624 160-342 (398)
173 KOG1009 Chromatin assembly com 99.5 3.2E-13 7E-18 141.9 11.4 165 456-626 13-185 (434)
174 KOG1188 WD40 repeat protein [G 99.5 2.5E-12 5.4E-17 133.0 17.5 262 298-596 35-346 (376)
175 KOG0771 Prolactin regulatory e 99.4 2.6E-12 5.7E-17 135.8 14.9 243 286-597 100-355 (398)
176 KOG0321 WD40 repeat-containing 99.4 4.8E-12 1E-16 139.0 17.2 228 350-627 66-338 (720)
177 KOG1963 WD40 repeat protein [G 99.4 6.5E-11 1.4E-15 134.4 26.6 285 314-624 37-416 (792)
178 PRK11028 6-phosphogluconolacto 99.4 1.3E-10 2.9E-15 123.1 27.8 218 342-614 82-326 (330)
179 KOG0307 Vesicle coat complex C 99.4 1.8E-12 3.9E-17 150.2 13.9 231 307-599 84-330 (1049)
180 KOG4227 WD40 repeat protein [G 99.4 3.2E-11 7E-16 126.2 21.7 256 333-626 50-377 (609)
181 KOG2110 Uncharacterized conser 99.4 6.4E-10 1.4E-14 116.3 29.6 202 358-597 106-331 (391)
182 PRK01742 tolB translocation pr 99.4 5.8E-11 1.3E-15 131.1 21.9 204 354-626 180-391 (429)
183 KOG0649 WD40 repeat protein [G 99.3 2.3E-11 5E-16 121.0 15.9 155 425-605 26-195 (325)
184 KOG1445 Tumor-specific antigen 99.3 2E-11 4.4E-16 133.7 16.6 202 339-598 627-846 (1012)
185 KOG0644 Uncharacterized conser 99.3 4.8E-12 1E-16 142.1 11.4 225 299-547 200-482 (1113)
186 KOG1273 WD40 repeat protein [G 99.3 8.4E-11 1.8E-15 120.7 18.4 193 342-596 26-226 (405)
187 KOG2919 Guanine nucleotide-bin 99.3 2.6E-11 5.6E-16 124.7 14.6 177 424-627 126-318 (406)
188 KOG1310 WD40 repeat protein [G 99.3 3E-11 6.6E-16 130.8 15.6 239 333-604 44-311 (758)
189 KOG1188 WD40 repeat protein [G 99.3 3.3E-11 7.2E-16 124.7 15.2 195 351-604 43-250 (376)
190 KOG2055 WD40 repeat protein [G 99.3 8.8E-11 1.9E-15 125.4 18.3 184 414-627 216-408 (514)
191 PRK04922 tolB translocation pr 99.3 4.8E-10 1E-14 124.0 23.8 205 358-625 184-397 (433)
192 KOG2111 Uncharacterized conser 99.3 1.1E-09 2.5E-14 112.7 23.6 219 358-593 75-319 (346)
193 KOG1517 Guanine nucleotide bin 99.3 3.7E-10 8E-15 129.9 21.4 195 350-599 1179-1384(1387)
194 KOG1524 WD40 repeat-containing 99.3 7.7E-11 1.7E-15 127.5 15.0 169 422-627 76-247 (737)
195 PRK03629 tolB translocation pr 99.3 2.2E-09 4.9E-14 118.7 27.2 215 334-614 193-424 (429)
196 KOG2394 WD40 protein DMR-N9 [G 99.2 9E-11 1.9E-15 127.2 15.0 118 455-600 289-456 (636)
197 PRK05137 tolB translocation pr 99.2 1.3E-09 2.9E-14 120.5 23.9 204 358-624 182-394 (435)
198 KOG1963 WD40 repeat protein [G 99.2 2E-09 4.4E-14 122.5 25.1 254 333-603 245-546 (792)
199 PRK11028 6-phosphogluconolacto 99.2 8.9E-09 1.9E-13 109.2 28.8 256 316-625 14-292 (330)
200 KOG1587 Cytoplasmic dynein int 99.2 6.7E-10 1.5E-14 125.2 20.7 230 339-597 242-517 (555)
201 KOG1523 Actin-related protein 99.2 2E-10 4.3E-15 118.3 14.9 197 379-627 9-227 (361)
202 KOG2110 Uncharacterized conser 99.2 2E-09 4.4E-14 112.6 22.4 136 433-597 108-249 (391)
203 KOG0649 WD40 repeat protein [G 99.2 1.1E-09 2.4E-14 109.2 19.4 202 382-614 12-253 (325)
204 KOG0974 WD-repeat protein WDR6 99.2 2.4E-10 5.3E-15 131.6 16.3 140 424-597 148-289 (967)
205 KOG1445 Tumor-specific antigen 99.2 7.7E-10 1.7E-14 121.6 18.8 233 307-599 49-296 (1012)
206 PRK05137 tolB translocation pr 99.2 7.9E-09 1.7E-13 114.3 26.4 203 333-600 195-416 (435)
207 PRK03629 tolB translocation pr 99.2 6.1E-09 1.3E-13 115.2 25.4 205 359-626 180-393 (429)
208 KOG1310 WD40 repeat protein [G 99.2 5.2E-11 1.1E-15 129.1 8.5 123 448-597 42-179 (758)
209 PRK04922 tolB translocation pr 99.2 7.6E-09 1.6E-13 114.4 25.2 214 333-612 197-427 (433)
210 PRK02889 tolB translocation pr 99.1 5.6E-09 1.2E-13 115.4 23.6 202 359-625 177-389 (427)
211 KOG0290 Conserved WD40 repeat- 99.1 1.7E-09 3.6E-14 110.2 17.1 191 340-592 151-361 (364)
212 KOG1524 WD40 repeat-containing 99.1 5.9E-10 1.3E-14 120.7 14.6 181 334-594 99-284 (737)
213 KOG1517 Guanine nucleotide bin 99.1 2.1E-09 4.6E-14 123.8 19.7 225 345-626 1073-1324(1387)
214 KOG1409 Uncharacterized conser 99.1 8.5E-10 1.8E-14 114.5 14.8 258 332-597 17-395 (404)
215 KOG2139 WD40 repeat protein [G 99.1 4.8E-09 1E-13 109.6 20.2 156 341-534 100-269 (445)
216 PF08662 eIF2A: Eukaryotic tra 99.1 2.5E-09 5.5E-14 105.9 17.1 127 378-563 57-186 (194)
217 PF08662 eIF2A: Eukaryotic tra 99.1 1.2E-08 2.6E-13 101.1 21.2 117 455-605 58-187 (194)
218 PRK02889 tolB translocation pr 99.1 4E-08 8.6E-13 108.6 25.5 214 333-614 189-421 (427)
219 KOG1587 Cytoplasmic dynein int 99.0 1.1E-08 2.4E-13 115.4 20.3 212 359-616 223-451 (555)
220 TIGR02800 propeller_TolB tol-p 99.0 3.3E-08 7.3E-13 107.7 23.4 205 358-625 170-383 (417)
221 TIGR02800 propeller_TolB tol-p 99.0 8.1E-08 1.8E-12 104.7 26.2 207 333-605 183-405 (417)
222 KOG1272 WD40-repeat-containing 99.0 6.9E-10 1.5E-14 118.8 9.4 210 352-629 145-358 (545)
223 KOG3881 Uncharacterized conser 99.0 2.3E-08 5.1E-13 105.4 18.5 223 331-614 97-338 (412)
224 KOG4497 Uncharacterized conser 99.0 1.9E-07 4E-12 96.9 24.2 295 262-614 15-409 (447)
225 KOG1240 Protein kinase contain 98.9 6.8E-08 1.5E-12 113.2 21.9 245 333-598 1042-1336(1431)
226 KOG1523 Actin-related protein 98.9 5.2E-08 1.1E-12 100.6 18.4 217 340-599 11-239 (361)
227 KOG4227 WD40 repeat protein [G 98.9 1.1E-08 2.3E-13 107.6 13.1 170 372-597 49-226 (609)
228 KOG0322 G-protein beta subunit 98.9 1.3E-08 2.8E-13 102.8 12.7 146 350-531 167-321 (323)
229 KOG2394 WD40 protein DMR-N9 [G 98.9 2E-08 4.3E-13 109.3 13.8 169 424-616 188-384 (636)
230 PRK00178 tolB translocation pr 98.9 3.5E-07 7.7E-12 100.8 24.1 203 360-625 181-392 (430)
231 KOG2321 WD40 repeat protein [G 98.9 7.3E-08 1.6E-12 105.6 18.0 145 424-597 190-344 (703)
232 KOG1334 WD40 repeat protein [G 98.9 1.6E-08 3.5E-13 108.9 12.5 257 313-597 163-467 (559)
233 KOG3914 WD repeat protein WDR4 98.8 3.4E-08 7.3E-13 104.6 13.2 122 456-605 110-232 (390)
234 PRK00178 tolB translocation pr 98.8 1.5E-06 3.1E-11 95.9 26.6 215 333-611 192-421 (430)
235 KOG4497 Uncharacterized conser 98.8 4.6E-08 1E-12 101.3 13.0 212 386-608 14-252 (447)
236 KOG0280 Uncharacterized conser 98.8 3.2E-07 7E-12 94.0 18.9 160 407-599 161-336 (339)
237 PRK04792 tolB translocation pr 98.8 1.5E-06 3.2E-11 96.9 25.7 215 335-613 213-442 (448)
238 PF02239 Cytochrom_D1: Cytochr 98.8 4.9E-06 1.1E-10 90.6 28.9 274 299-620 3-329 (369)
239 KOG2321 WD40 repeat protein [G 98.7 7.6E-07 1.7E-11 97.9 20.6 253 336-621 48-328 (703)
240 KOG0974 WD-repeat protein WDR6 98.7 2E-07 4.4E-12 108.0 17.0 141 350-534 147-289 (967)
241 PRK04792 tolB translocation pr 98.7 2.3E-06 5.1E-11 95.3 23.8 201 363-625 202-411 (448)
242 PRK01029 tolB translocation pr 98.7 6.8E-06 1.5E-10 91.1 27.3 189 363-607 215-414 (428)
243 PF02239 Cytochrom_D1: Cytochr 98.7 1.2E-05 2.6E-10 87.5 27.2 194 351-604 9-210 (369)
244 PRK01029 tolB translocation pr 98.7 3.7E-06 8.1E-11 93.2 23.6 205 363-624 167-388 (428)
245 KOG0309 Conserved WD40 repeat- 98.7 5.8E-08 1.3E-12 108.7 8.8 211 334-597 109-340 (1081)
246 KOG4547 WD40 repeat-containing 98.6 6.8E-07 1.5E-11 98.6 16.6 205 350-597 7-221 (541)
247 KOG4190 Uncharacterized conser 98.6 4.3E-08 9.3E-13 106.6 6.9 214 332-605 728-957 (1034)
248 KOG1064 RAVE (regulator of V-A 98.6 8.6E-08 1.9E-12 115.5 9.6 194 338-605 2207-2407(2439)
249 KOG1240 Protein kinase contain 98.6 3.5E-06 7.6E-11 99.3 21.4 198 364-614 1034-1245(1431)
250 KOG4547 WD40 repeat-containing 98.6 2.4E-06 5.1E-11 94.5 18.7 162 423-614 7-191 (541)
251 KOG2111 Uncharacterized conser 98.6 1.2E-05 2.6E-10 83.5 22.4 162 430-626 74-246 (346)
252 PF00400 WD40: WD domain, G-be 98.6 1.8E-07 4E-12 67.5 6.4 37 448-484 3-39 (39)
253 KOG1272 WD40-repeat-containing 98.5 2.2E-07 4.9E-12 99.9 8.9 154 333-531 204-360 (545)
254 KOG2139 WD40 repeat protein [G 98.5 4.9E-06 1.1E-10 87.5 17.4 170 424-624 113-298 (445)
255 PF00400 WD40: WD domain, G-be 98.5 2.9E-07 6.3E-12 66.5 5.6 38 557-594 1-39 (39)
256 PLN02919 haloacid dehalogenase 98.5 0.00019 4.2E-09 87.9 33.2 154 424-600 698-892 (1057)
257 KOG3881 Uncharacterized conser 98.4 1.5E-05 3.3E-10 84.5 19.1 196 407-627 101-311 (412)
258 PF10282 Lactonase: Lactonase, 98.4 0.0012 2.5E-08 71.1 34.3 271 287-613 35-343 (345)
259 KOG4190 Uncharacterized conser 98.4 6.8E-07 1.5E-11 97.5 9.0 173 407-604 731-914 (1034)
260 TIGR02658 TTQ_MADH_Hv methylam 98.4 0.00076 1.7E-08 72.9 30.5 265 316-605 29-339 (352)
261 KOG1354 Serine/threonine prote 98.3 1.7E-05 3.6E-10 83.2 16.5 166 407-598 160-361 (433)
262 KOG1354 Serine/threonine prote 98.3 1.2E-05 2.6E-10 84.2 13.6 240 379-628 24-351 (433)
263 KOG1064 RAVE (regulator of V-A 98.3 3E-06 6.4E-11 102.8 10.4 148 423-605 2222-2375(2439)
264 KOG0280 Uncharacterized conser 98.3 4.5E-05 9.8E-10 78.6 17.1 154 415-598 125-286 (339)
265 KOG2315 Predicted translation 98.2 0.00074 1.6E-08 74.8 25.8 234 358-626 105-374 (566)
266 PF08450 SGL: SMP-30/Gluconola 98.1 0.0057 1.2E-07 62.2 30.2 227 293-584 4-244 (246)
267 KOG3914 WD repeat protein WDR4 98.1 3.6E-05 7.9E-10 82.0 13.9 115 411-536 110-226 (390)
268 KOG0309 Conserved WD40 repeat- 98.1 5.4E-06 1.2E-10 93.4 7.6 120 451-597 109-233 (1081)
269 KOG1409 Uncharacterized conser 98.1 8.7E-05 1.9E-09 77.9 15.5 189 422-614 37-247 (404)
270 TIGR03300 assembly_YfgL outer 98.0 0.0016 3.4E-08 70.5 23.9 224 350-609 107-352 (377)
271 PLN02919 haloacid dehalogenase 98.0 0.0034 7.3E-08 77.2 28.5 163 459-626 685-878 (1057)
272 KOG2695 WD40 repeat protein [G 98.0 3E-05 6.5E-10 81.3 9.2 159 425-614 228-399 (425)
273 PF08450 SGL: SMP-30/Gluconola 97.9 0.013 2.8E-07 59.6 28.1 191 354-614 18-231 (246)
274 COG5354 Uncharacterized protei 97.9 0.0018 3.8E-08 71.3 21.1 296 249-588 65-421 (561)
275 COG4946 Uncharacterized protei 97.9 0.00088 1.9E-08 73.0 18.5 129 388-527 327-467 (668)
276 KOG2315 Predicted translation 97.8 0.001 2.2E-08 73.8 18.6 140 378-577 268-410 (566)
277 PF10282 Lactonase: Lactonase, 97.8 0.017 3.6E-07 62.2 28.0 204 290-527 87-316 (345)
278 PRK04043 tolB translocation pr 97.8 0.007 1.5E-07 67.2 25.4 199 341-597 189-401 (419)
279 PF07433 DUF1513: Protein of u 97.8 0.014 3E-07 61.7 26.0 209 340-605 17-256 (305)
280 KOG0882 Cyclophilin-related pe 97.8 0.0003 6.4E-09 76.2 13.7 263 338-605 8-314 (558)
281 KOG2041 WD40 repeat protein [G 97.8 7.8E-05 1.7E-09 84.0 9.7 147 424-596 29-186 (1189)
282 PF15492 Nbas_N: Neuroblastoma 97.8 0.0066 1.4E-07 62.8 22.9 209 339-605 43-268 (282)
283 PF13360 PQQ_2: PQQ-like domai 97.8 0.015 3.3E-07 57.9 25.1 191 348-603 36-237 (238)
284 PRK04043 tolB translocation pr 97.8 0.009 2E-07 66.3 25.5 199 363-625 171-386 (419)
285 TIGR02658 TTQ_MADH_Hv methylam 97.8 0.027 6E-07 61.0 28.0 233 358-622 27-315 (352)
286 COG5170 CDC55 Serine/threonine 97.7 0.00018 4E-09 74.6 10.7 217 379-605 25-319 (460)
287 KOG4532 WD40-like repeat conta 97.7 0.0014 3.1E-08 67.1 15.9 169 424-624 87-271 (344)
288 KOG4532 WD40-like repeat conta 97.7 0.003 6.5E-08 64.8 18.2 193 350-604 86-290 (344)
289 COG5354 Uncharacterized protei 97.7 0.0048 1E-07 68.0 20.9 215 359-627 109-336 (561)
290 KOG2066 Vacuolar assembly/sort 97.6 0.0007 1.5E-08 77.7 13.4 151 413-605 41-196 (846)
291 TIGR03300 assembly_YfgL outer 97.6 0.034 7.3E-07 60.2 25.6 133 422-593 242-376 (377)
292 PF04762 IKI3: IKI3 family; I 97.5 0.038 8.2E-07 67.2 28.2 275 289-599 22-336 (928)
293 KOG4714 Nucleoporin [Nuclear s 97.5 0.00034 7.4E-09 71.2 8.3 60 424-487 195-255 (319)
294 COG2706 3-carboxymuconate cycl 97.5 0.21 4.6E-06 53.3 30.8 270 287-613 38-342 (346)
295 KOG4714 Nucleoporin [Nuclear s 97.5 0.00075 1.6E-08 68.8 10.1 144 422-597 102-255 (319)
296 COG4946 Uncharacterized protei 97.4 0.015 3.3E-07 63.7 20.3 140 429-604 339-485 (668)
297 smart00320 WD40 WD40 repeats. 97.4 0.00038 8.3E-09 46.7 5.4 37 448-484 4-40 (40)
298 KOG1645 RING-finger-containing 97.4 0.0028 6E-08 68.1 14.0 228 332-614 186-437 (463)
299 COG2706 3-carboxymuconate cycl 97.4 0.036 7.9E-07 59.0 21.8 212 357-624 15-261 (346)
300 smart00320 WD40 WD40 repeats. 97.4 0.00043 9.3E-09 46.4 5.1 38 557-594 2-40 (40)
301 KOG1832 HIV-1 Vpr-binding prot 97.3 0.00018 3.9E-09 82.8 4.3 198 333-602 1095-1297(1516)
302 KOG2314 Translation initiation 97.3 0.022 4.8E-07 63.5 20.0 144 345-520 216-363 (698)
303 KOG1275 PAB-dependent poly(A) 97.3 0.0021 4.5E-08 74.8 12.5 148 414-594 180-340 (1118)
304 KOG2695 WD40 repeat protein [G 97.3 0.00064 1.4E-08 71.6 7.5 135 413-576 254-401 (425)
305 KOG0882 Cyclophilin-related pe 97.2 0.00047 1E-08 74.7 6.1 173 422-604 21-239 (558)
306 KOG2041 WD40 repeat protein [G 97.2 0.023 5E-07 64.9 18.7 278 292-595 18-336 (1189)
307 COG5170 CDC55 Serine/threonine 97.2 0.003 6.6E-08 65.8 10.9 199 411-629 26-303 (460)
308 KOG2114 Vacuolar assembly/sort 97.0 0.031 6.8E-07 65.1 18.2 178 413-614 27-221 (933)
309 KOG1832 HIV-1 Vpr-binding prot 97.0 0.00071 1.5E-08 78.1 5.0 148 448-625 1093-1249(1516)
310 KOG1912 WD40 repeat protein [G 96.9 0.041 8.9E-07 63.5 17.9 134 315-485 36-185 (1062)
311 KOG2066 Vacuolar assembly/sort 96.9 0.036 7.8E-07 64.2 17.3 136 350-519 85-221 (846)
312 PF13360 PQQ_2: PQQ-like domai 96.8 0.25 5.4E-06 49.2 21.4 149 424-605 39-200 (238)
313 PRK11138 outer membrane biogen 96.8 0.13 2.7E-06 56.3 20.7 197 350-605 162-362 (394)
314 PF11768 DUF3312: Protein of u 96.8 0.014 3.1E-07 65.6 13.0 74 454-534 257-330 (545)
315 PF15492 Nbas_N: Neuroblastoma 96.7 0.095 2.1E-06 54.5 17.5 192 261-494 49-267 (282)
316 PF04762 IKI3: IKI3 family; I 96.7 0.84 1.8E-05 55.8 28.3 204 382-597 211-457 (928)
317 PF07433 DUF1513: Protein of u 96.6 1 2.2E-05 47.9 24.7 228 311-587 25-277 (305)
318 PF11768 DUF3312: Protein of u 96.6 0.099 2.1E-06 59.0 17.7 64 424-494 274-337 (545)
319 PF00930 DPPIV_N: Dipeptidyl p 96.4 0.57 1.2E-05 50.6 21.7 217 383-623 103-344 (353)
320 KOG1912 WD40 repeat protein [G 96.3 0.13 2.8E-06 59.6 16.3 223 344-605 20-269 (1062)
321 PF08553 VID27: VID27 cytoplas 96.2 0.34 7.4E-06 57.6 19.9 143 351-527 497-642 (794)
322 KOG1008 Uncharacterized conser 96.2 0.0017 3.8E-08 73.0 1.0 193 350-596 72-275 (783)
323 PRK02888 nitrous-oxide reducta 96.0 0.26 5.7E-06 56.9 17.3 133 357-521 295-449 (635)
324 KOG1920 IkappaB kinase complex 95.9 0.7 1.5E-05 56.2 20.8 109 460-597 199-323 (1265)
325 KOG2114 Vacuolar assembly/sort 95.8 0.9 1.9E-05 53.5 20.5 201 350-605 37-252 (933)
326 PRK11138 outer membrane biogen 95.8 1.6 3.4E-05 47.8 22.1 133 424-595 259-393 (394)
327 PF14783 BBS2_Mid: Ciliary BBS 95.5 0.54 1.2E-05 42.6 13.8 99 459-591 2-109 (111)
328 PRK13616 lipoprotein LpqB; Pro 95.4 1.1 2.3E-05 52.2 19.4 188 379-616 348-550 (591)
329 PRK02888 nitrous-oxide reducta 95.2 2.1 4.6E-05 49.6 20.6 141 466-625 286-450 (635)
330 KOG2314 Translation initiation 95.1 0.21 4.5E-06 56.0 11.9 121 459-600 213-338 (698)
331 KOG4640 Anaphase-promoting com 95.0 0.092 2E-06 59.6 9.0 88 504-614 21-112 (665)
332 KOG3621 WD40 repeat-containing 94.7 0.12 2.5E-06 59.5 8.8 112 416-531 40-152 (726)
333 COG0823 TolB Periplasmic compo 94.6 1.5 3.2E-05 49.0 17.2 177 369-604 182-366 (425)
334 KOG2395 Protein involved in va 94.4 1.4 3E-05 49.6 16.0 146 350-529 348-497 (644)
335 KOG1008 Uncharacterized conser 94.2 0.016 3.5E-07 65.5 0.8 143 424-595 73-224 (783)
336 KOG4640 Anaphase-promoting com 94.1 0.21 4.6E-06 56.8 9.1 64 424-493 35-99 (665)
337 KOG1275 PAB-dependent poly(A) 94.0 1.1 2.4E-05 53.2 14.7 135 345-484 182-340 (1118)
338 KOG3621 WD40 repeat-containing 93.9 0.2 4.2E-06 57.7 8.5 122 455-597 32-155 (726)
339 COG3490 Uncharacterized protei 93.9 3.2 7E-05 43.7 16.6 191 363-604 95-318 (366)
340 KOG1645 RING-finger-containing 93.9 0.096 2.1E-06 56.7 5.7 78 449-532 186-265 (463)
341 PF04841 Vps16_N: Vps16, N-ter 93.5 9 0.0002 42.5 20.7 39 567-605 216-255 (410)
342 PF03178 CPSF_A: CPSF A subuni 93.5 6.4 0.00014 41.7 18.9 153 431-614 62-231 (321)
343 PF14783 BBS2_Mid: Ciliary BBS 92.9 4.2 9.1E-05 37.0 13.8 87 424-527 18-108 (111)
344 PRK13616 lipoprotein LpqB; Pro 92.7 14 0.0003 43.2 21.3 152 337-520 347-513 (591)
345 COG3386 Gluconolactonase [Carb 92.5 17 0.00037 38.8 22.6 114 450-586 156-276 (307)
346 PF10647 Gmad1: Lipoprotein Lp 92.4 15 0.00032 37.9 20.6 114 458-592 67-192 (253)
347 PF04053 Coatomer_WDAD: Coatom 92.1 2.4 5.1E-05 47.6 13.8 137 450-625 26-163 (443)
348 KOG2444 WD40 repeat protein [G 91.9 0.48 1E-05 48.1 7.1 104 468-597 70-178 (238)
349 PF04053 Coatomer_WDAD: Coatom 91.8 5.1 0.00011 45.0 16.0 127 383-526 35-167 (443)
350 KOG3617 WD40 and TPR repeat-co 91.7 0.31 6.7E-06 57.1 6.2 108 460-597 19-132 (1416)
351 PF06433 Me-amine-dh_H: Methyl 91.6 23 0.0005 38.4 23.7 54 551-605 270-329 (342)
352 PF12894 Apc4_WD40: Anaphase-p 91.5 0.45 9.8E-06 36.5 5.0 34 567-601 11-45 (47)
353 KOG2444 WD40 repeat protein [G 91.3 0.42 9.1E-06 48.5 6.0 107 351-493 33-139 (238)
354 cd00216 PQQ_DH Dehydrogenases 91.2 31 0.00066 39.1 24.9 27 579-605 407-433 (488)
355 KOG2079 Vacuolar assembly/sort 91.1 0.4 8.7E-06 57.6 6.4 49 566-614 129-179 (1206)
356 PF12894 Apc4_WD40: Anaphase-p 91.1 0.66 1.4E-05 35.6 5.5 34 456-490 11-44 (47)
357 KOG4649 PQQ (pyrrolo-quinoline 90.8 23 0.0005 37.0 19.5 68 422-494 64-131 (354)
358 KOG1916 Nuclear protein, conta 90.8 0.35 7.5E-06 57.1 5.5 156 432-601 154-328 (1283)
359 PF06977 SdiA-regulated: SdiA- 90.7 23 0.00049 36.8 21.8 202 378-624 19-239 (248)
360 COG3386 Gluconolactonase [Carb 90.7 27 0.00058 37.4 22.0 136 457-614 111-261 (307)
361 KOG1920 IkappaB kinase complex 90.3 6.1 0.00013 48.5 15.2 68 457-530 69-136 (1265)
362 KOG4499 Ca2+-binding protein R 90.0 26 0.00056 36.3 18.4 108 455-586 156-275 (310)
363 PF08553 VID27: VID27 cytoplas 89.8 8.2 0.00018 46.3 15.8 141 424-595 497-646 (794)
364 KOG2079 Vacuolar assembly/sort 89.3 1.5 3.2E-05 53.0 9.1 99 423-527 101-199 (1206)
365 PF02897 Peptidase_S9_N: Proly 89.3 5.1 0.00011 43.9 13.1 109 382-523 125-246 (414)
366 KOG3617 WD40 and TPR repeat-co 89.2 3.5 7.5E-05 48.8 11.7 69 416-489 64-134 (1416)
367 PF12234 Rav1p_C: RAVE protein 89.1 12 0.00027 43.7 16.2 121 457-595 30-155 (631)
368 PF08596 Lgl_C: Lethal giant l 88.8 22 0.00047 39.5 17.4 188 411-605 86-299 (395)
369 COG0823 TolB Periplasmic compo 87.5 16 0.00035 40.8 15.5 148 450-625 186-344 (425)
370 PF10313 DUF2415: Uncharacteri 87.0 2.1 4.5E-05 32.3 5.5 33 457-489 1-36 (43)
371 PF00930 DPPIV_N: Dipeptidyl p 86.8 50 0.0011 35.6 22.0 79 432-521 261-345 (353)
372 PF05694 SBP56: 56kDa selenium 85.1 45 0.00098 37.4 17.0 140 354-521 218-391 (461)
373 TIGR02604 Piru_Ver_Nterm putat 84.8 29 0.00064 37.7 15.6 66 456-523 71-143 (367)
374 PF06977 SdiA-regulated: SdiA- 82.8 63 0.0014 33.5 24.1 206 334-592 16-246 (248)
375 KOG2395 Protein involved in va 82.3 22 0.00049 40.4 13.2 151 413-596 338-500 (644)
376 cd00216 PQQ_DH Dehydrogenases 81.4 1E+02 0.0022 35.0 20.4 26 580-605 303-328 (488)
377 PF11715 Nup160: Nucleoporin N 80.4 4.9 0.00011 46.0 7.8 38 568-605 215-257 (547)
378 PF06433 Me-amine-dh_H: Methyl 79.6 46 0.001 36.1 14.2 141 431-601 17-171 (342)
379 KOG4649 PQQ (pyrrolo-quinoline 79.4 87 0.0019 33.0 26.1 52 348-402 63-115 (354)
380 COG3391 Uncharacterized conser 78.2 1.1E+02 0.0024 33.5 27.5 193 351-605 89-292 (381)
381 PF15390 DUF4613: Domain of un 77.6 99 0.0022 36.0 16.5 137 453-614 53-209 (671)
382 PF07995 GSDH: Glucose / Sorbo 76.4 27 0.00059 37.5 11.6 113 382-525 3-135 (331)
383 PF11715 Nup160: Nucleoporin N 76.4 15 0.00032 42.1 10.2 38 457-494 215-256 (547)
384 PF00780 CNH: CNH domain; Int 75.4 99 0.0022 31.5 24.0 218 350-605 9-264 (275)
385 PF00780 CNH: CNH domain; Int 74.1 1.1E+02 0.0023 31.2 17.5 150 421-604 7-173 (275)
386 PF10168 Nup88: Nuclear pore c 73.3 82 0.0018 37.8 15.4 98 504-604 85-188 (717)
387 PF07995 GSDH: Glucose / Sorbo 72.2 53 0.0011 35.3 12.6 55 458-514 3-59 (331)
388 PF08596 Lgl_C: Lethal giant l 71.9 30 0.00065 38.4 10.8 100 505-604 3-123 (395)
389 PF14583 Pectate_lyase22: Olig 71.7 52 0.0011 36.3 12.3 214 365-624 16-255 (386)
390 PF10313 DUF2415: Uncharacteri 71.6 13 0.00029 28.0 5.4 31 568-598 1-35 (43)
391 PHA02713 hypothetical protein; 70.3 1E+02 0.0022 35.7 15.1 29 577-605 512-542 (557)
392 PRK10115 protease 2; Provision 69.7 2.5E+02 0.0053 33.6 28.0 34 261-303 132-165 (686)
393 COG3391 Uncharacterized conser 69.1 1.8E+02 0.0039 31.8 22.1 143 426-603 91-246 (381)
394 KOG2377 Uncharacterized conser 65.8 1.4E+02 0.003 33.8 13.8 118 455-598 65-187 (657)
395 PF14655 RAB3GAP2_N: Rab3 GTPa 65.1 25 0.00055 39.2 8.4 92 461-575 6-116 (415)
396 KOG4460 Nuclear pore complex, 64.1 76 0.0016 36.4 11.6 96 504-602 104-204 (741)
397 PF12234 Rav1p_C: RAVE protein 63.8 1.4E+02 0.0031 35.1 14.5 75 551-626 54-149 (631)
398 COG3490 Uncharacterized protei 62.9 1.8E+02 0.0038 31.2 13.4 130 461-614 72-232 (366)
399 PF03178 CPSF_A: CPSF A subuni 62.2 2.1E+02 0.0046 30.1 17.3 94 431-532 107-201 (321)
400 PF02897 Peptidase_S9_N: Proly 62.0 2.4E+02 0.0052 30.7 28.7 111 354-488 146-262 (414)
401 PF04841 Vps16_N: Vps16, N-ter 61.9 2.6E+02 0.0056 31.0 25.6 38 456-493 216-253 (410)
402 PRK10115 protease 2; Provision 61.4 88 0.0019 37.2 12.6 78 381-489 127-210 (686)
403 KOG4441 Proteins containing BT 60.2 3.3E+02 0.0072 31.7 18.4 86 431-527 349-440 (571)
404 COG3204 Uncharacterized protei 59.7 1.3E+02 0.0028 32.2 11.9 72 452-527 81-152 (316)
405 KOG4659 Uncharacterized conser 59.2 3.4E+02 0.0073 34.8 16.5 22 452-473 657-678 (1899)
406 PF07569 Hira: TUP1-like enhan 57.5 54 0.0012 33.2 8.7 67 464-531 18-93 (219)
407 TIGR03606 non_repeat_PQQ dehyd 56.6 3.4E+02 0.0075 30.8 15.6 19 506-524 148-166 (454)
408 KOG3630 Nuclear pore complex, 56.5 44 0.00095 41.4 8.7 100 425-529 118-224 (1405)
409 PF05096 Glu_cyclase_2: Glutam 56.4 2.6E+02 0.0057 29.4 14.9 118 458-605 46-166 (264)
410 PF07250 Glyoxal_oxid_N: Glyox 56.3 1.5E+02 0.0033 30.6 11.8 68 460-527 121-193 (243)
411 PF14655 RAB3GAP2_N: Rab3 GTPa 54.9 81 0.0018 35.3 10.1 47 448-494 299-345 (415)
412 PF08728 CRT10: CRT10; InterP 53.8 1.2E+02 0.0025 36.3 11.6 114 459-595 103-245 (717)
413 KOG1897 Damage-specific DNA bi 53.3 5.3E+02 0.012 32.0 20.5 207 360-624 752-992 (1096)
414 TIGR03075 PQQ_enz_alc_DH PQQ-d 53.1 4.1E+02 0.0089 30.6 27.7 55 551-605 444-499 (527)
415 KOG2280 Vacuolar assembly/sort 52.6 3.9E+02 0.0085 32.1 15.2 167 429-605 62-255 (829)
416 KOG1916 Nuclear protein, conta 51.9 4.4 9.5E-05 48.4 -0.3 132 451-607 127-282 (1283)
417 TIGR03074 PQQ_membr_DH membran 51.7 5.2E+02 0.011 31.4 24.5 26 580-605 461-486 (764)
418 TIGR03606 non_repeat_PQQ dehyd 51.5 4.1E+02 0.0089 30.2 15.3 65 451-515 24-90 (454)
419 PF07676 PD40: WD40-like Beta 51.4 48 0.001 23.4 5.3 32 452-483 4-38 (39)
420 PF10647 Gmad1: Lipoprotein Lp 51.4 2E+02 0.0044 29.6 11.9 111 458-595 25-143 (253)
421 PF10168 Nup88: Nuclear pore c 50.5 1.2E+02 0.0025 36.5 11.1 40 454-493 144-186 (717)
422 KOG4499 Ca2+-binding protein R 49.4 3.3E+02 0.0072 28.5 16.8 39 576-614 220-260 (310)
423 TIGR02604 Piru_Ver_Nterm putat 48.8 3.8E+02 0.0083 29.0 17.1 59 457-520 14-87 (367)
424 PF05096 Glu_cyclase_2: Glutam 45.3 3.9E+02 0.0085 28.1 21.7 118 338-495 43-166 (264)
425 KOG3630 Nuclear pore complex, 44.2 1E+02 0.0022 38.5 9.1 142 458-624 102-262 (1405)
426 PF07569 Hira: TUP1-like enhan 42.9 1E+02 0.0022 31.2 8.0 70 416-486 17-95 (219)
427 PF15390 DUF4613: Domain of un 41.7 6.5E+02 0.014 29.6 15.4 128 378-534 54-187 (671)
428 TIGR03075 PQQ_enz_alc_DH PQQ-d 41.6 6E+02 0.013 29.2 20.4 25 579-603 316-340 (527)
429 TIGR03074 PQQ_membr_DH membran 40.3 5E+02 0.011 31.5 14.4 27 579-605 317-353 (764)
430 PHA02713 hypothetical protein; 39.8 3.7E+02 0.0081 31.1 12.9 53 432-489 481-536 (557)
431 KOG1900 Nuclear pore complex, 39.1 2.8E+02 0.0061 35.2 12.0 159 428-597 96-273 (1311)
432 PF14761 HPS3_N: Hermansky-Pud 38.4 3.6E+02 0.0078 27.5 10.8 50 469-522 29-78 (215)
433 PHA03098 kelch-like protein; P 37.8 6.5E+02 0.014 28.5 14.8 23 467-489 342-369 (534)
434 PF14870 PSII_BNR: Photosynthe 36.7 5.6E+02 0.012 27.4 24.5 71 455-527 185-256 (302)
435 smart00564 PQQ beta-propeller 36.3 73 0.0016 21.4 4.1 26 579-604 7-32 (33)
436 PF11538 Snurportin1: Snurport 36.3 36 0.00077 25.4 2.5 22 67-89 5-26 (40)
437 PF14583 Pectate_lyase22: Olig 33.2 2.2E+02 0.0048 31.6 9.1 117 484-621 16-139 (386)
438 PF05694 SBP56: 56kDa selenium 33.2 1.8E+02 0.004 32.8 8.5 108 476-597 220-343 (461)
439 PF08801 Nucleoporin_N: Nup133 33.1 6.9E+02 0.015 27.4 15.2 30 568-597 190-220 (422)
440 PLN00033 photosystem II stabil 31.5 7.6E+02 0.017 27.4 18.4 113 457-594 239-354 (398)
441 KOG2247 WD40 repeat-containing 31.3 6.2 0.00013 44.4 -3.1 135 424-593 49-185 (615)
442 PF03088 Str_synth: Strictosid 29.9 1.6E+02 0.0034 25.7 5.9 45 424-474 30-74 (89)
443 PF01011 PQQ: PQQ enzyme repea 29.1 1.2E+02 0.0026 21.6 4.3 26 580-605 2-27 (38)
444 PLN00033 photosystem II stabil 28.7 8.5E+02 0.018 27.1 18.8 115 456-593 280-396 (398)
445 PRK06856 DNA polymerase III su 28.3 34 0.00074 31.9 1.6 14 81-94 2-15 (128)
446 TIGR00664 DNA_III_psi DNA poly 27.6 35 0.00077 32.1 1.6 14 81-94 3-16 (133)
447 PF10214 Rrn6: RNA polymerase 27.5 8.5E+02 0.018 29.4 13.7 28 458-485 147-175 (765)
448 TIGR03118 PEPCTERM_chp_1 conse 26.9 8.4E+02 0.018 26.5 21.1 64 551-614 225-304 (336)
449 PRK14364 Maf-like protein; Pro 26.9 38 0.00081 33.4 1.8 17 77-93 2-18 (181)
450 PRK01441 Maf-like protein; Rev 26.0 36 0.00079 34.3 1.5 17 77-93 10-26 (207)
451 TIGR00172 maf MAF protein. Thi 25.1 40 0.00087 33.3 1.6 17 77-93 8-24 (183)
452 PRK02478 Maf-like protein; Rev 24.7 41 0.00089 33.7 1.6 18 77-94 8-25 (199)
453 COG2133 Glucose/sorbosone dehy 24.3 9.1E+02 0.02 27.0 12.0 21 504-524 177-197 (399)
454 PRK13684 Ycf48-like protein; P 24.3 8.9E+02 0.019 25.9 23.9 117 456-595 214-330 (334)
455 PRK14367 Maf-like protein; Pro 24.2 43 0.00093 33.7 1.6 18 77-94 7-24 (202)
456 PRK00234 Maf-like protein; Rev 24.0 44 0.00095 33.3 1.6 18 77-94 7-24 (192)
457 PRK04056 Maf-like protein; Rev 24.0 45 0.00097 32.9 1.7 17 77-93 5-21 (180)
458 PF10395 Utp8: Utp8 family; I 23.9 1.3E+03 0.028 27.6 20.1 146 456-627 129-299 (670)
459 TIGR02276 beta_rpt_yvtn 40-res 23.3 2.5E+02 0.0053 19.6 5.2 26 580-605 6-31 (42)
460 PF08728 CRT10: CRT10; InterP 23.3 5.9E+02 0.013 30.6 10.8 108 422-532 115-245 (717)
461 PRK14363 Maf-like protein; Pro 22.9 47 0.001 33.5 1.6 18 77-94 6-23 (204)
462 cd00555 Maf Nucleotide binding 22.9 49 0.0011 32.6 1.7 17 77-93 4-20 (180)
463 KOG1900 Nuclear pore complex, 22.7 5.4E+02 0.012 32.9 10.6 34 454-487 240-273 (1311)
464 PRK14368 Maf-like protein; Pro 22.6 48 0.001 33.1 1.6 18 77-94 10-27 (193)
465 PF02545 Maf: Maf-like protein 22.4 43 0.00093 33.4 1.2 17 77-93 6-22 (195)
466 PRK00078 Maf-like protein; Rev 22.2 49 0.0011 32.9 1.6 18 77-94 6-23 (192)
467 COG5167 VID27 Protein involved 21.9 1.3E+03 0.028 26.9 14.8 205 286-527 414-627 (776)
468 PRK00648 Maf-like protein; Rev 21.7 51 0.0011 32.8 1.6 17 77-93 8-24 (191)
469 PF14870 PSII_BNR: Photosynthe 21.7 1E+03 0.022 25.5 23.8 104 500-625 141-251 (302)
470 PF14727 PHTB1_N: PTHB1 N-term 21.7 1.2E+03 0.025 26.3 13.3 180 436-626 10-196 (418)
471 PRK14361 Maf-like protein; Pro 21.6 54 0.0012 32.5 1.7 18 77-94 4-21 (187)
472 PF12657 TFIIIC_delta: Transcr 21.6 4.4E+02 0.0095 25.3 8.1 30 568-597 86-122 (173)
473 PRK04425 Maf-like protein; Rev 21.4 52 0.0011 32.9 1.6 18 77-94 10-27 (196)
474 PRK04694 Maf-like protein; Rev 21.4 55 0.0012 32.6 1.7 17 77-93 5-21 (190)
475 PRK14362 Maf-like protein; Pro 20.9 55 0.0012 33.1 1.6 17 77-93 17-33 (207)
476 PRK00884 Maf-like protein; Rev 20.8 56 0.0012 32.6 1.6 18 77-94 7-24 (194)
477 PHA03283 envelope glycoprotein 20.6 1.1E+02 0.0025 34.9 4.1 12 66-77 502-513 (542)
478 COG3204 Uncharacterized protei 20.2 1.1E+03 0.024 25.4 16.0 128 336-488 82-212 (316)
479 PRK00032 Maf-like protein; Rev 20.1 59 0.0013 32.4 1.6 18 77-94 7-24 (190)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2e-38 Score=326.82 Aligned_cols=276 Identities=20% Similarity=0.285 Sum_probs=245.4
Q ss_pred eeEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcC-
Q 006825 315 WKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSV- 390 (630)
Q Consensus 315 ~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSp- 390 (630)
+.|+||..|..++ .++.||...|.+++++| .||||+.|++|+ +||.++|+++..--.||.+.|.++||-|
T Consensus 138 TvR~WD~~TeTp~-----~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~-lwdpktg~~~g~~l~gH~K~It~Lawep~ 211 (480)
T KOG0271|consen 138 TVRLWDLDTETPL-----FTCKGHKNWVLCVAWSPDGKKIASGSKDGSIR-LWDPKTGQQIGRALRGHKKWITALAWEPL 211 (480)
T ss_pred eEEeeccCCCCcc-----eeecCCccEEEEEEECCCcchhhccccCCeEE-EecCCCCCcccccccCcccceeEEeeccc
Confidence 3556666777788 89999999999999999 899999999999 9999999987755459999999999976
Q ss_pred ----CCCeEEeecCCCC-----Cc------cccCCcceEEEeecCCCe-EEEecCCcEEEEEeCCCCcccceeeeeEecc
Q 006825 391 ----TGHKERRSSDERD-----TS------SEKGGRRSSSATDDSQDV-SFHGQERVRVRQYGKSCKDLTALYKCQEIQA 454 (630)
Q Consensus 391 ----dG~~lasgS~D~d-----t~------s~~gh~~~Vsa~~~s~d~-l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~g 454 (630)
...++|+++.|.+ +. .+.||+..|+|+....++ +++|+.|++|++|+...+. ++++|+|
T Consensus 212 hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~-----~~r~lkG 286 (480)
T KOG0271|consen 212 HLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGK-----LCRELKG 286 (480)
T ss_pred ccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchh-----HHHhhcc
Confidence 5678999999982 21 289999999999999777 9999999999999987664 5789999
Q ss_pred cCcCEEEEEEc-----------cCCC-------------------------EEEEEeCCCcEEEEECcCCc-eeeeeecc
Q 006825 455 HNGSIWSIKFS-----------LDGR-------------------------YLASAGEDCVIHVWQVVESE-RKGELLEK 497 (630)
Q Consensus 455 Ht~~V~sVaFS-----------pDG~-------------------------~LASgS~DgtIrVWDl~tg~-~~~~l~~~ 497 (630)
|...|+.|+.+ |.|+ .|+||+.|.++.+|+-...+ ++..
T Consensus 287 HahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~r---- 362 (480)
T KOG0271|consen 287 HAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITR---- 362 (480)
T ss_pred cchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhh----
Confidence 99999999988 2244 49999999999999975443 4434
Q ss_pred cccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEc
Q 006825 498 QEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWS 576 (630)
Q Consensus 498 ~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafS 576 (630)
..+|...|..+.|+||+++|++++-|..| ++|+. +|+.+.+|.||-..|+.++|+
T Consensus 363 -mtgHq~lVn~V~fSPd~r~IASaSFDkSV-----------------------kLW~g~tGk~lasfRGHv~~VYqvaws 418 (480)
T KOG0271|consen 363 -MTGHQALVNHVSFSPDGRYIASASFDKSV-----------------------KLWDGRTGKFLASFRGHVAAVYQVAWS 418 (480)
T ss_pred -hhchhhheeeEEECCCccEEEEeecccce-----------------------eeeeCCCcchhhhhhhccceeEEEEec
Confidence 48999999999999999999999999999 88988 899999999999999999999
Q ss_pred CC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcEEEEecceec
Q 006825 577 KS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLRFAYGAFLNV 629 (630)
Q Consensus 577 Pd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~lAsgs~~nI 629 (630)
.| .+|+|||.|.|+|+|++++.++...+. |.+.|.++. +|++..+++|+.+.+
T Consensus 419 aDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv 474 (480)
T KOG0271|consen 419 ADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKV 474 (480)
T ss_pred cCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceE
Confidence 99 999999999999999999999999998 999999999 999999999987653
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.3e-38 Score=322.62 Aligned_cols=259 Identities=21% Similarity=0.203 Sum_probs=231.8
Q ss_pred eeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-----C-
Q 006825 333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-----D- 403 (630)
Q Consensus 333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-----d- 403 (630)
..+.||...|-+++|+| .|||||.|.|+| +||..|..++++.| ||...|.+|+|+|||+.||+|+.+. +
T Consensus 109 sS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR-~WD~~TeTp~~t~K-gH~~WVlcvawsPDgk~iASG~~dg~I~lwdp 186 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVR-LWDLDTETPLFTCK-GHKNWVLCVAWSPDGKKIASGSKDGSIRLWDP 186 (480)
T ss_pred cccCCCCCcEEEEEecCCCceEEecCCCceEE-eeccCCCCcceeec-CCccEEEEEEECCCcchhhccccCCeEEEecC
Confidence 46889999999999999 899999999999 99999999999999 9999999999999999999999987 2
Q ss_pred -C-----ccccCCcceEEEeecCCCe-------EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCE
Q 006825 404 -T-----SSEKGGRRSSSATDDSQDV-------SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRY 470 (630)
Q Consensus 404 -t-----~s~~gh~~~Vsa~~~s~d~-------l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~ 470 (630)
+ ..++||+..|+++++.+.. +++++.|+.|+|||+..+. ++..+.||+.+|+||+|--+| +
T Consensus 187 ktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~-----~~~~lsgHT~~VTCvrwGG~g-l 260 (480)
T KOG0271|consen 187 KTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT-----CVRTLSGHTASVTCVRWGGEG-L 260 (480)
T ss_pred CCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce-----EEEEeccCccceEEEEEcCCc-e
Confidence 2 2399999999999988643 7888999999999997663 688899999999999996554 8
Q ss_pred EEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECC-----------CCC-----------------------
Q 006825 471 LASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSP-----------EPT----------------------- 516 (630)
Q Consensus 471 LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSp-----------dg~----------------------- 516 (630)
|+|||.|++||+|+...|.+.++| .||...|..++.+. .+.
T Consensus 261 iySgS~DrtIkvw~a~dG~~~r~l-----kGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~ 335 (480)
T KOG0271|consen 261 IYSGSQDRTIKVWRALDGKLCREL-----KGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDS 335 (480)
T ss_pred EEecCCCceEEEEEccchhHHHhh-----cccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccC
Confidence 999999999999999999998885 89999999887762 233
Q ss_pred --EEEEeeCCCeeeeecccccccccccccCccccccEEEeC--CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEE
Q 006825 517 --SLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL--SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVR 591 (630)
Q Consensus 517 --~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl--sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVr 591 (630)
.+++|++|.++ .+|+. +.+++..+.||...|+.+.|||| .++||+|.|+.||
T Consensus 336 ~erlVSgsDd~tl-----------------------flW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVk 392 (480)
T KOG0271|consen 336 GERLVSGSDDFTL-----------------------FLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVK 392 (480)
T ss_pred cceeEEecCCceE-----------------------EEecccccccchhhhhchhhheeeEEECCCccEEEEeeccccee
Confidence 37777777777 77776 56789999999999999999999 9999999999999
Q ss_pred EEeCCCCcEEEEEe-cCCceEEEE-cCCCcEEEEecce
Q 006825 592 LWHLSSKTCLKIFS-HSDYDISLV-DRLMLRFAYGAFL 627 (630)
Q Consensus 592 IWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~lAsgs~~ 627 (630)
|||.++|+.+.+|. |-+.|+.|+ +.+...+.+++.+
T Consensus 393 LW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkD 430 (480)
T KOG0271|consen 393 LWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKD 430 (480)
T ss_pred eeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCC
Confidence 99999999999999 999999999 8888888888765
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6.9e-37 Score=318.90 Aligned_cols=257 Identities=22% Similarity=0.231 Sum_probs=232.0
Q ss_pred EEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec-----ceEeecCCCccEecccCCCC
Q 006825 295 IKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ-----NVEEGNKDSFDLNNNGSSGG 369 (630)
Q Consensus 295 I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~-----~laSgS~D~tvr~vWD~~tG 369 (630)
.....|++.+++... +|. .++|.+.++..+ ++|.||+..|.++.|+| .|||++.|++++ +|++.+-
T Consensus 181 ~~fS~ds~~laT~sw--sG~-~kvW~~~~~~~~-----~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvk-lw~~~~e 251 (459)
T KOG0272|consen 181 CSFSRDSKHLATGSW--SGL-VKVWSVPQCNLL-----QTLRGHTSRVGAAVFHPVDSDLNLATASADGTVK-LWKLSQE 251 (459)
T ss_pred eEeecCCCeEEEeec--CCc-eeEeecCCccee-----EEEeccccceeeEEEccCCCccceeeeccCCcee-eeccCCC
Confidence 334455666665555 333 568888888667 99999999999999999 699999999999 9999999
Q ss_pred ceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-----C--Ccc----ccCCcceEEEeecCCCe--EEEecCCcEEEEE
Q 006825 370 GMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-----D--TSS----EKGGRRSSSATDDSQDV--SFHGQERVRVRQY 436 (630)
Q Consensus 370 ~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-----d--t~s----~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriW 436 (630)
..+..+. ||..+|-.|||.|+|++|+|++.|. | ++. ..||...|.+++|.++| +++|+.|..-|+|
T Consensus 252 ~~l~~l~-gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvW 330 (459)
T KOG0272|consen 252 TPLQDLE-GHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVW 330 (459)
T ss_pred cchhhhh-cchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhhee
Confidence 9999999 9999999999999999999999998 2 332 89999999999999999 7899999999999
Q ss_pred eCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECC-CC
Q 006825 437 GKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSP-EP 515 (630)
Q Consensus 437 d~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSp-dg 515 (630)
|+.++. ++..|.||...|.+|+|+|+|..|||||.|+++||||++....+.++ .+|.+.|..|.|+| .|
T Consensus 331 DlRtgr-----~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~i-----pAH~nlVS~Vk~~p~~g 400 (459)
T KOG0272|consen 331 DLRTGR-----CIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTI-----PAHSNLVSQVKYSPQEG 400 (459)
T ss_pred ecccCc-----EEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceec-----ccccchhhheEecccCC
Confidence 998885 78899999999999999999999999999999999999988877664 89999999999999 59
Q ss_pred CEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEE
Q 006825 516 TSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLW 593 (630)
Q Consensus 516 ~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIW 593 (630)
.+|++++.|.++ ++|.. +..++++|.||.+.|.++..+++ ++++|++.|.|||+|
T Consensus 401 ~fL~TasyD~t~-----------------------kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW 457 (459)
T KOG0272|consen 401 YFLVTASYDNTV-----------------------KIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLW 457 (459)
T ss_pred eEEEEcccCcce-----------------------eeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeec
Confidence 999999999999 77777 77999999999999999999999 999999999999999
Q ss_pred e
Q 006825 594 H 594 (630)
Q Consensus 594 D 594 (630)
.
T Consensus 458 ~ 458 (459)
T KOG0272|consen 458 R 458 (459)
T ss_pred c
Confidence 5
No 4
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.8e-36 Score=332.15 Aligned_cols=316 Identities=41% Similarity=0.640 Sum_probs=203.6
Q ss_pred CCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCccceeEEEeecceEeecCCCccEecc--cCCCC---cee
Q 006825 298 LDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQNVEEGNKDSFDLNNN--GSSGG---GMK 372 (630)
Q Consensus 298 LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~~laSgS~D~tvr~vW--D~~tG---~~~ 372 (630)
++.|++++|.+...++.|.++.|++++..+++|+|+...|+...|.+++....+- .+.... -. ++... ...
T Consensus 106 ~~~~~e~~v~e~~~~~~~~~~sd~~~~~~~~~e~~e~~~g~~~~v~~l~~~~~~~---~~~~~~-~~~~~~s~s~~~~~~ 181 (712)
T KOG0283|consen 106 LDTGDEFSVSENPEDGSVNRLSDVGTGASSTLEELESSPGESSRVKELGDRENAD---LDEMLT-KYNDDVSGSVLLRKS 181 (712)
T ss_pred ecccceeeEeeccCccccccccCCCcccccccccccCCcCcccchhhhhhhcccc---cchhhc-ccccccccccccchh
Confidence 6999999999999999999999999999999999999999999999998866331 111111 00 01001 001
Q ss_pred EEecCCccCCEEEEEEcCCCCeEEe-ecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeE
Q 006825 373 SKKKGSWFKSIRTVASSVTGHKERR-SSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQE 451 (630)
Q Consensus 373 ~~lk~gH~~~V~sVAfSpdG~~las-gS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~t 451 (630)
.+....+...++.++-..++...-. ..++.+.....++...-.........-+......+++-+.+..+++..++..|.
T Consensus 182 ~r~~~~~l~~~k~~~~~~s~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~rvkv~~~~K~~kelsal~~~Qe 261 (712)
T KOG0283|consen 182 KRYGKRWLKSLKVVAHSLSSLSENRRSRFDSDSSSQFHNYLSEPKSSKDKEMKYNLPSRVKVRHYKKSPKELSALTVVQE 261 (712)
T ss_pred hhhhhhhhhhccccccccccccccccccccccchhcccccccccccccccccccCCcceEEecccCCCcccceeeEEeec
Confidence 1111146666766666655431100 011111111111111111111111111222245567778888889999999999
Q ss_pred ec-ccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeee
Q 006825 452 IQ-AHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKK 530 (630)
Q Consensus 452 L~-gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~ 530 (630)
+. +|.++||+|.||+||+||||||+|+.||||.+...+....- .+....+. ......+..-...+..+.+
T Consensus 262 ~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~-----~~~~~~~~-~~~~~~s~~~p~~s~~~~~--- 332 (712)
T KOG0283|consen 262 ISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVA-----EGDSSCMY-FEYNANSQIEPSTSSEEKI--- 332 (712)
T ss_pred cccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhccc-----ccccchhh-hhhhhccccCccccccccc---
Confidence 99 99999999999999999999999999999999765442210 11111110 0000011111111111111
Q ss_pred cccc-cccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEecCCc
Q 006825 531 RRGR-SINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDY 609 (630)
Q Consensus 531 ~~~~-~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~l~t~~H~~~ 609 (630)
..+ ..............+.+++.+..++++.|.||.+.|++|+||.+++|+|+|+|+|||||++...+||++|.|.++
T Consensus 333 -~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~Hndf 411 (712)
T KOG0283|consen 333 -SSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSHNDF 411 (712)
T ss_pred -cccccccccccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEecCCe
Confidence 001 111222223334566688888999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEE-cC-CCcEEEEecce
Q 006825 610 DISLV-DR-LMLRFAYGAFL 627 (630)
Q Consensus 610 V~sVa-s~-~~~~lAsgs~~ 627 (630)
|+||+ +| +..+|++|+.+
T Consensus 412 VTcVaFnPvDDryFiSGSLD 431 (712)
T KOG0283|consen 412 VTCVAFNPVDDRYFISGSLD 431 (712)
T ss_pred eEEEEecccCCCcEeecccc
Confidence 99999 44 66777777644
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=7.3e-35 Score=303.80 Aligned_cols=261 Identities=18% Similarity=0.169 Sum_probs=239.3
Q ss_pred eeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCC--CCeEEeecCCC-----
Q 006825 333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVT--GHKERRSSDER----- 402 (630)
Q Consensus 333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpd--G~~lasgS~D~----- 402 (630)
..-+|-+..|....|+. .|||||++++++ ||.+.++..+.+|+ ||...|.++.|+|. +.-++|++.|+
T Consensus 169 ~SQ~gd~rPis~~~fS~ds~~laT~swsG~~k-vW~~~~~~~~~~l~-gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw 246 (459)
T KOG0272|consen 169 CSQVGDTRPISGCSFSRDSKHLATGSWSGLVK-VWSVPQCNLLQTLR-GHTSRVGAAVFHPVDSDLNLATASADGTVKLW 246 (459)
T ss_pred hhhccCCCcceeeEeecCCCeEEEeecCCcee-EeecCCcceeEEEe-ccccceeeEEEccCCCccceeeeccCCceeee
Confidence 33456677788888887 799999999999 99999999999999 99999999999996 67899999998
Q ss_pred --C----CccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEE
Q 006825 403 --D----TSSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASA 474 (630)
Q Consensus 403 --d----t~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASg 474 (630)
+ ...+.||...|..++|.+.| +.+++.|.+-|+||+.++.. +....||...|.+|+|.+||.+++||
T Consensus 247 ~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~E-----lL~QEGHs~~v~~iaf~~DGSL~~tG 321 (459)
T KOG0272|consen 247 KLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSE-----LLLQEGHSKGVFSIAFQPDGSLAATG 321 (459)
T ss_pred ccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchh-----hHhhcccccccceeEecCCCceeecc
Confidence 1 23389999999999999999 99999999999999998853 34468999999999999999999999
Q ss_pred eCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEe
Q 006825 475 GEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFA 554 (630)
Q Consensus 475 S~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwd 554 (630)
|.|..-||||+++|.++..| .+|...|..|+|+|.|..+++|+.|+++ +||+
T Consensus 322 GlD~~~RvWDlRtgr~im~L-----~gH~k~I~~V~fsPNGy~lATgs~Dnt~-----------------------kVWD 373 (459)
T KOG0272|consen 322 GLDSLGRVWDLRTGRCIMFL-----AGHIKEILSVAFSPNGYHLATGSSDNTC-----------------------KVWD 373 (459)
T ss_pred CccchhheeecccCcEEEEe-----cccccceeeEeECCCceEEeecCCCCcE-----------------------EEee
Confidence 99999999999999999885 8999999999999999999999999999 8888
Q ss_pred C-CCCceEEeccCCCCEEEEEEcCC--CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcEEEEeccee
Q 006825 555 L-SDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLRFAYGAFLN 628 (630)
Q Consensus 555 l-sgk~l~tL~GHs~~V~sLafSPd--~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~lAsgs~~n 628 (630)
+ ..+++.++.+|.+.|+.|.|+|. .+|+|+|.|++++||...+.++++++. |.+.|.++. ++++.+++++++++
T Consensus 374 LR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DR 452 (459)
T KOG0272|consen 374 LRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDR 452 (459)
T ss_pred ecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCc
Confidence 8 55778999999999999999996 889999999999999999999999998 999999999 99999999998874
No 6
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.4e-32 Score=302.65 Aligned_cols=282 Identities=18% Similarity=0.200 Sum_probs=230.8
Q ss_pred eeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcE-------EEEee--ecCCCceeEEEEcCCCceEeeec
Q 006825 261 MSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKE-------FVVNE--IQEDGTWKKVKEVGTGRQLTIEE 331 (630)
Q Consensus 261 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~-------~~v~e--~~~dg~~~~l~dv~TG~~lt~ee 331 (630)
.-||+|+++| |-+=.+...++|.|+.-+. .+... +..|-. ..+-|..++-..
T Consensus 384 a~fSddssml--------------A~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~-~~~~D~~~~~~~---- 444 (707)
T KOG0263|consen 384 AEFSDDSSML--------------ACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVD-VDMLDDDSSGTS---- 444 (707)
T ss_pred EeecCCcchh--------------hccccccEEEEEecchhhhccccchhhhccccccccchh-hhhccccCCcee----
Confidence 5899999988 4445556789999875431 11111 111111 122233333333
Q ss_pred ceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCcccc
Q 006825 332 FEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEK 408 (630)
Q Consensus 332 f~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~ 408 (630)
.++.||+++|....|+| +|+|+|.|.++| +|.+.|-.++-..+ ||..+|..|.|+|-|.|+||+
T Consensus 445 -~~L~GH~GPVyg~sFsPd~rfLlScSED~svR-LWsl~t~s~~V~y~-GH~~PVwdV~F~P~GyYFata---------- 511 (707)
T KOG0263|consen 445 -RTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVR-LWSLDTWSCLVIYK-GHLAPVWDVQFAPRGYYFATA---------- 511 (707)
T ss_pred -EEeecCCCceeeeeecccccceeeccCCccee-eeecccceeEEEec-CCCcceeeEEecCCceEEEec----------
Confidence 56999999999999999 899999999999 99999999999999 999999999999999888654
Q ss_pred CCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCC
Q 006825 409 GGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVES 488 (630)
Q Consensus 409 gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg 488 (630)
+.|++.++|..... +..+.+.||-.-|.|++|+|+..|+||||.|++||+||+.+|
T Consensus 512 -------------------s~D~tArLWs~d~~-----~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G 567 (707)
T KOG0263|consen 512 -------------------SHDQTARLWSTDHN-----KPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTG 567 (707)
T ss_pred -------------------CCCceeeeeecccC-----CchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCC
Confidence 55667899987654 357889999999999999999999999999999999999999
Q ss_pred ceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCC
Q 006825 489 ERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHL 567 (630)
Q Consensus 489 ~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs 567 (630)
..++.+ .||..+|.+++|+|+|++|++|+.|+.| .+|++ +++++.+|.+|+
T Consensus 568 ~~VRiF-----~GH~~~V~al~~Sp~Gr~LaSg~ed~~I-----------------------~iWDl~~~~~v~~l~~Ht 619 (707)
T KOG0263|consen 568 NSVRIF-----TGHKGPVTALAFSPCGRYLASGDEDGLI-----------------------KIWDLANGSLVKQLKGHT 619 (707)
T ss_pred cEEEEe-----cCCCCceEEEEEcCCCceEeecccCCcE-----------------------EEEEcCCCcchhhhhccc
Confidence 998884 8999999999999999999999999999 89998 789999999999
Q ss_pred CCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCc------------------------EEEEEe-cCCceEEEE-cCCCcE
Q 006825 568 DDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKT------------------------CLKIFS-HSDYDISLV-DRLMLR 620 (630)
Q Consensus 568 ~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~------------------------~l~t~~-H~~~V~sVa-s~~~~~ 620 (630)
+.|.+|.|+.+ ..||+|+.|.+|++||+..-. ++.+|. ...+|.+|. ....+.
T Consensus 620 ~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl~ 699 (707)
T KOG0263|consen 620 GTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRNLL 699 (707)
T ss_pred CceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeecCceEEEEEEecccee
Confidence 99999999999 999999999999999986422 455665 666777777 444466
Q ss_pred EEEecc
Q 006825 621 FAYGAF 626 (630)
Q Consensus 621 lAsgs~ 626 (630)
++.|.+
T Consensus 700 L~~g~~ 705 (707)
T KOG0263|consen 700 LAVGPF 705 (707)
T ss_pred EEeccc
Confidence 666543
No 7
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.9e-32 Score=277.45 Aligned_cols=263 Identities=18% Similarity=0.250 Sum_probs=238.5
Q ss_pred ecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCC---
Q 006825 330 EEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERD--- 403 (630)
Q Consensus 330 eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~d--- 403 (630)
.+.+.+.||...|+.+.|+| .+++++.|.|++ +||..||+....++ ||++.|..|+|+..|+++++.|.|-.
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tik-v~D~~tg~~e~~Lr-GHt~sv~di~~~a~Gk~l~tcSsDl~~~L 176 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIK-VFDTETGELERSLR-GHTDSVFDISFDASGKYLATCSSDLSAKL 176 (406)
T ss_pred CchhhhhccccceeeeeeccCceEEEEecCCceEE-EEEccchhhhhhhh-ccccceeEEEEecCccEEEecCCccchhh
Confidence 45578899999999999999 788999999999 99999999999999 99999999999999999999998861
Q ss_pred ---------CccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEE
Q 006825 404 ---------TSSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLA 472 (630)
Q Consensus 404 ---------t~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LA 472 (630)
...+.||...|+++.|-|.+ +++++.|.+|+.|+..++ +++.+|.+|...|.-++.+.||.++|
T Consensus 177 Wd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg-----~cv~t~~~h~ewvr~v~v~~DGti~A 251 (406)
T KOG0295|consen 177 WDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTG-----YCVKTFPGHSEWVRMVRVNQDGTIIA 251 (406)
T ss_pred eeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccc-----eeEEeccCchHhEEEEEecCCeeEEE
Confidence 23388999999999998877 999999999999988776 68999999999999999999999999
Q ss_pred EEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCC---------------CCEEEEeeCCCeeeeeccccccc
Q 006825 473 SAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE---------------PTSLSPKHLDNHLEKKRRGRSIN 537 (630)
Q Consensus 473 SgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpd---------------g~~lasgs~Dg~I~i~~~~~~~~ 537 (630)
+++.|.+|++|-+.++++..++ .+|..+|-+++|.|. +.++.+++.|++|
T Consensus 252 s~s~dqtl~vW~~~t~~~k~~l-----R~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktI---------- 316 (406)
T KOG0295|consen 252 SCSNDQTLRVWVVATKQCKAEL-----REHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTI---------- 316 (406)
T ss_pred ecCCCceEEEEEeccchhhhhh-----hccccceEEEEecccccCcchhhccCCCCCccEEEeecccceE----------
Confidence 9999999999999999888774 899999999999764 2467777777777
Q ss_pred ccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE
Q 006825 538 RKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV 614 (630)
Q Consensus 538 ~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa 614 (630)
++|++ ++.++.+|.||...|..++|+|. +||+|+..|+++|+||+.+++|.+++. |...|+++.
T Consensus 317 -------------k~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lD 383 (406)
T KOG0295|consen 317 -------------KIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLD 383 (406)
T ss_pred -------------EEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEe
Confidence 89999 89999999999999999999999 999999999999999999999999999 999999999
Q ss_pred -cCCCcEEEEecce
Q 006825 615 -DRLMLRFAYGAFL 627 (630)
Q Consensus 615 -s~~~~~lAsgs~~ 627 (630)
+.+..+..+|+.+
T Consensus 384 fh~~~p~VvTGsVd 397 (406)
T KOG0295|consen 384 FHKTAPYVVTGSVD 397 (406)
T ss_pred cCCCCceEEecccc
Confidence 5555577777644
No 8
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.3e-30 Score=262.01 Aligned_cols=260 Identities=16% Similarity=0.166 Sum_probs=237.4
Q ss_pred eeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-------
Q 006825 333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER------- 402 (630)
Q Consensus 333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~------- 402 (630)
.+|.||...|.++-|++ .++|+|.|+.+. |||.-|....+-+. --...|..+||+|.|+++|.|+-|.
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklI-vWDs~TtnK~haip-l~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~l 126 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLI-VWDSFTTNKVHAIP-LPSSWVMTCAYSPSGNFVACGGLDNKCSIYPL 126 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEE-EEEcccccceeEEe-cCceeEEEEEECCCCCeEEecCcCceeEEEec
Confidence 67899999999999998 899999999999 99999998888777 6788999999999999999998876
Q ss_pred C----------CccccCCcceEEEeecCCCe-EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc-CCCE
Q 006825 403 D----------TSSEKGGRRSSSATDDSQDV-SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRY 470 (630)
Q Consensus 403 d----------t~s~~gh~~~Vsa~~~s~d~-l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp-DG~~ 470 (630)
. ...+.+|..-+++..|-.+. +++++.|.+.-+||+++++ .++.|.||++-|.+|+++| +++.
T Consensus 127 s~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~-----~~~~f~GH~gDV~slsl~p~~~nt 201 (343)
T KOG0286|consen 127 STRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQ-----QTQVFHGHTGDVMSLSLSPSDGNT 201 (343)
T ss_pred ccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccce-----EEEEecCCcccEEEEecCCCCCCe
Confidence 1 12289999999999999998 9999999999999998875 5788999999999999999 9999
Q ss_pred EEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCcccccc
Q 006825 471 LASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPE 550 (630)
Q Consensus 471 LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~ 550 (630)
++||+.|++.+|||++.+.+.+.+ .+|..-|.+|.|.|+|.-+++|++|++.
T Consensus 202 FvSg~cD~~aklWD~R~~~c~qtF-----~ghesDINsv~ffP~G~afatGSDD~tc----------------------- 253 (343)
T KOG0286|consen 202 FVSGGCDKSAKLWDVRSGQCVQTF-----EGHESDINSVRFFPSGDAFATGSDDATC----------------------- 253 (343)
T ss_pred EEecccccceeeeeccCcceeEee-----cccccccceEEEccCCCeeeecCCCcee-----------------------
Confidence 999999999999999999999884 8999999999999999999999999999
Q ss_pred EEEeC-CCCceEEecc--CCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcEEEEe
Q 006825 551 TVFAL-SDKPICSFQG--HLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLRFAYG 624 (630)
Q Consensus 551 ~Vwdl-sgk~l~tL~G--Hs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~lAsg 624 (630)
++|++ ..+.+..|.. -...|++++||.. .+|..|..|.++.+||.-.++.+..+. |.+.|.||. .|++..+++|
T Consensus 254 RlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~Tg 333 (343)
T KOG0286|consen 254 RLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATG 333 (343)
T ss_pred EEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEec
Confidence 78888 6677777763 2357899999999 888899999999999999999999998 999999999 9999999999
Q ss_pred cce
Q 006825 625 AFL 627 (630)
Q Consensus 625 s~~ 627 (630)
+++
T Consensus 334 SWD 336 (343)
T KOG0286|consen 334 SWD 336 (343)
T ss_pred chh
Confidence 876
No 9
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=6.6e-31 Score=262.80 Aligned_cols=259 Identities=17% Similarity=0.166 Sum_probs=223.8
Q ss_pred eeeecCccceeEEEeec----ceEeecCCCccEecccC-----CCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-
Q 006825 333 EMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGS-----SGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER- 402 (630)
Q Consensus 333 ~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~-----~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~- 402 (630)
.+|.||.+.|++++..+ .+.++|.|+++. +|++ +.|..++.++ ||...|..|+.++||++..+++.|+
T Consensus 9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii-~W~L~~dd~~~G~~~r~~~-GHsH~v~dv~~s~dg~~alS~swD~~ 86 (315)
T KOG0279|consen 9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTII-VWKLTSDDIKYGVPVRRLT-GHSHFVSDVVLSSDGNFALSASWDGT 86 (315)
T ss_pred eeecCCCceEEEEEeecCCCceEEEcccceEEE-EEEeccCccccCceeeeee-ccceEecceEEccCCceEEeccccce
Confidence 68999999999999877 799999999999 9975 4588899999 8999999999999999999999998
Q ss_pred ----C------CccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEeccc--CcCEEEEEEccC-
Q 006825 403 ----D------TSSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAH--NGSIWSIKFSLD- 467 (630)
Q Consensus 403 ----d------t~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gH--t~~V~sVaFSpD- 467 (630)
| +..+.||...|.+++|+++. +++|+.|.+|++|+..+. +..++..+ .+.|.|+.|+|.
T Consensus 87 lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~------ck~t~~~~~~~~WVscvrfsP~~ 160 (315)
T KOG0279|consen 87 LRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV------CKYTIHEDSHREWVSCVRFSPNE 160 (315)
T ss_pred EEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc------EEEEEecCCCcCcEEEEEEcCCC
Confidence 2 23399999999999999988 999999999999998665 44555544 789999999997
Q ss_pred -CCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCcc
Q 006825 468 -GRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHM 546 (630)
Q Consensus 468 -G~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~ 546 (630)
..+|+++|+|++|||||+.+.+.... +.||.+.+..++++|||.++++|+.|+.+
T Consensus 161 ~~p~Ivs~s~DktvKvWnl~~~~l~~~-----~~gh~~~v~t~~vSpDGslcasGgkdg~~------------------- 216 (315)
T KOG0279|consen 161 SNPIIVSASWDKTVKVWNLRNCQLRTT-----FIGHSGYVNTVTVSPDGSLCASGGKDGEA------------------- 216 (315)
T ss_pred CCcEEEEccCCceEEEEccCCcchhhc-----cccccccEEEEEECCCCCEEecCCCCceE-------------------
Confidence 67999999999999999998887766 48999999999999999999999999999
Q ss_pred ccccEEEeC-CCCceEEeccCCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEe--c------CCceEEEE---
Q 006825 547 VVPETVFAL-SDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS--H------SDYDISLV--- 614 (630)
Q Consensus 547 i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~l~t~~--H------~~~V~sVa--- 614 (630)
.+|++ .++.+.+| +|...|.+++|+|+.|.+.+..+..|+|||+.++.++..++ - .+.+.|+.
T Consensus 217 ----~LwdL~~~k~lysl-~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaw 291 (315)
T KOG0279|consen 217 ----MLWDLNEGKNLYSL-EAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAW 291 (315)
T ss_pred ----EEEEccCCceeEec-cCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEE
Confidence 88898 56776665 58899999999999888888888889999999999998885 1 12455555
Q ss_pred cCCCcEEEEeccee
Q 006825 615 DRLMLRFAYGAFLN 628 (630)
Q Consensus 615 s~~~~~lAsgs~~n 628 (630)
++++..|-.|-..+
T Consensus 292 s~dG~tLf~g~td~ 305 (315)
T KOG0279|consen 292 SADGQTLFAGYTDN 305 (315)
T ss_pred cCCCcEEEeeecCC
Confidence 77788877775554
No 10
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=9.2e-30 Score=279.82 Aligned_cols=275 Identities=15% Similarity=0.188 Sum_probs=238.2
Q ss_pred EEEEcCCCceEeeecceeeecCccceeEEEeec----ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCC
Q 006825 317 KVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTG 392 (630)
Q Consensus 317 ~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG 392 (630)
.+.|..+.+.. ..++|....|..+.|-. .||.+++-+-+| +++..+-.+. .+. ||...|.+++...+|
T Consensus 306 ~l~d~~~l~i~-----k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr-~y~~~~~~c~-ii~-GH~e~vlSL~~~~~g 377 (775)
T KOG0319|consen 306 FLYDEDELTIV-----KQIVGYNDEILDMKFLGPEESHLAVATNSPELR-LYTLPTSYCQ-IIP-GHTEAVLSLDVWSSG 377 (775)
T ss_pred EEEEccccEEe-----hhhcCCchhheeeeecCCccceEEEEeCCCceE-EEecCCCceE-EEe-CchhheeeeeecccC
Confidence 34555666666 77899999999999975 899999999999 9998887777 455 999999999977888
Q ss_pred CeEEeecCCCC---------------CccccCCcceEEEeecCCCe---EEEecCCcEEEEEeCCCCcccc----eeeee
Q 006825 393 HKERRSSDERD---------------TSSEKGGRRSSSATDDSQDV---SFHGQERVRVRQYGKSCKDLTA----LYKCQ 450 (630)
Q Consensus 393 ~~lasgS~D~d---------------t~s~~gh~~~Vsa~~~s~d~---l~Sgs~Dg~VriWd~~~~el~~----~~~v~ 450 (630)
-+|+|+|.|+. ...-.||.+.|.+++++..+ +++++.|.++++|++...+... +.+..
T Consensus 378 ~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~ 457 (775)
T KOG0319|consen 378 DLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRY 457 (775)
T ss_pred cEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhH
Confidence 99999999981 12268899999999997665 8999999999999986522111 11223
Q ss_pred EecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeee
Q 006825 451 EIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKK 530 (630)
Q Consensus 451 tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~ 530 (630)
+...|..-|+||+++|+.++|||||+|+++|||++++......| .||...|++|.|+|..+.+++++.|++|
T Consensus 458 t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vL-----sGH~RGvw~V~Fs~~dq~laT~SgD~Tv--- 529 (775)
T KOG0319|consen 458 TERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVL-----SGHTRGVWCVSFSKNDQLLATCSGDKTV--- 529 (775)
T ss_pred HHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEe-----eCCccceEEEEeccccceeEeccCCceE---
Confidence 45689999999999999999999999999999999977777774 9999999999999999999999999999
Q ss_pred cccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cC
Q 006825 531 RRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HS 607 (630)
Q Consensus 531 ~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~ 607 (630)
+||.+ +..++++|.||+..|..+.|-.+ .+|+|++.||-||||++.+++|++++. |.
T Consensus 530 --------------------KIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~ 589 (775)
T KOG0319|consen 530 --------------------KIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHN 589 (775)
T ss_pred --------------------EEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhcc
Confidence 88988 78999999999999999999888 999999999999999999999999998 99
Q ss_pred CceEEEE-cCCCcEEEEecce
Q 006825 608 DYDISLV-DRLMLRFAYGAFL 627 (630)
Q Consensus 608 ~~V~sVa-s~~~~~lAsgs~~ 627 (630)
+.||+++ .+....+++|+.+
T Consensus 590 DrvWaL~~~~~~~~~~tgg~D 610 (775)
T KOG0319|consen 590 DRVWALSVSPLLDMFVTGGGD 610 (775)
T ss_pred ceeEEEeecCccceeEecCCC
Confidence 9999999 7777788877654
No 11
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.97 E-value=3.8e-29 Score=250.26 Aligned_cols=234 Identities=19% Similarity=0.221 Sum_probs=197.6
Q ss_pred cCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEe
Q 006825 321 VGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERR 397 (630)
Q Consensus 321 v~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~las 397 (630)
...|.++ ..|.||+-.|..++.++ +.+|+|+|+++| +||+++|+..+.|. ||.+-|.+|||++|...+++
T Consensus 50 ~~~G~~~-----r~~~GHsH~v~dv~~s~dg~~alS~swD~~lr-lWDl~~g~~t~~f~-GH~~dVlsva~s~dn~qivS 122 (315)
T KOG0279|consen 50 IKYGVPV-----RRLTGHSHFVSDVVLSSDGNFALSASWDGTLR-LWDLATGESTRRFV-GHTKDVLSVAFSTDNRQIVS 122 (315)
T ss_pred cccCcee-----eeeeccceEecceEEccCCceEEeccccceEE-EEEecCCcEEEEEE-ecCCceEEEEecCCCceeec
Confidence 3477888 89999999999999998 899999999999 99999999999999 99999999999999999999
Q ss_pred ecCCC-----CC-------ccccCCcceEEEeecCCCe----EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEE
Q 006825 398 SSDER-----DT-------SSEKGGRRSSSATDDSQDV----SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWS 461 (630)
Q Consensus 398 gS~D~-----dt-------~s~~gh~~~Vsa~~~s~d~----l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~s 461 (630)
||.|+ ++ ....+++..|+|+.|+|.- +++++.|++|++||+.+-++ .+.+.||++.|+.
T Consensus 123 GSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l-----~~~~~gh~~~v~t 197 (315)
T KOG0279|consen 123 GSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL-----RTTFIGHSGYVNT 197 (315)
T ss_pred CCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch-----hhccccccccEEE
Confidence 99998 22 1133448899999999873 89999999999999977653 5778899999999
Q ss_pred EEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccccccccccc
Q 006825 462 IKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSL 541 (630)
Q Consensus 462 VaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~ 541 (630)
+++||||.++++|+.||.+.+||++.++.+.. .+|...|.+++|+|.-..|+.+ .+..|
T Consensus 198 ~~vSpDGslcasGgkdg~~~LwdL~~~k~lys------l~a~~~v~sl~fspnrywL~~a-t~~sI-------------- 256 (315)
T KOG0279|consen 198 VTVSPDGSLCASGGKDGEAMLWDLNEGKNLYS------LEAFDIVNSLCFSPNRYWLCAA-TATSI-------------- 256 (315)
T ss_pred EEECCCCCEEecCCCCceEEEEEccCCceeEe------ccCCCeEeeEEecCCceeEeec-cCCce--------------
Confidence 99999999999999999999999999998776 5788999999999986555444 66667
Q ss_pred ccCccccccEEEeC-CCCceEEe----ccC-----CCCEEEEEEcCC-CeEEEEECCCcEEEEeCC
Q 006825 542 SLDHMVVPETVFAL-SDKPICSF----QGH-----LDDVLDLSWSKS-QHLLSSSMDKTVRLWHLS 596 (630)
Q Consensus 542 s~d~~i~~~~Vwdl-sgk~l~tL----~GH-----s~~V~sLafSPd-~~LaSgS~DgtVrIWDl~ 596 (630)
+||++ ++.++.+| .|. .-...+++|+++ +.|..|-.|+.|++|.+.
T Consensus 257 ---------kIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 257 ---------KIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred ---------EEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 55555 33333332 122 334578999999 999999999999999875
No 12
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=4e-29 Score=249.18 Aligned_cols=259 Identities=18% Similarity=0.112 Sum_probs=211.2
Q ss_pred ecceeeecCccceeEEEeec----ceEeecCCCccEecccCCC---CceeEEecCCccCCEEEEEEcCCCCeEEeecCCC
Q 006825 330 EEFEMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSG---GGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER 402 (630)
Q Consensus 330 eef~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~t---G~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~ 402 (630)
.+++.+.||.+.|+.+|+.| .|||++.|++|| +|+... -.++..+..+|++.|++|||+|.|++|+++|.|.
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vr-iw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVR-IWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA 83 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEE-EEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence 45688999999999999999 399999999999 999874 4567777789999999999999999999999997
Q ss_pred C-------------CccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccC
Q 006825 403 D-------------TSSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLD 467 (630)
Q Consensus 403 d-------------t~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpD 467 (630)
. ...+.||.+.|.+++++.++ |++++.|..|++|..... ..+.+...|++|+.-|.-+.|+|.
T Consensus 84 t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~ded--dEfec~aVL~~HtqDVK~V~WHPt 161 (312)
T KOG0645|consen 84 TVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDED--DEFECIAVLQEHTQDVKHVIWHPT 161 (312)
T ss_pred eEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCC--CcEEEEeeeccccccccEEEEcCC
Confidence 1 23388999999999999999 999999999999998743 345688999999999999999999
Q ss_pred CCEEEEEeCCCcEEEEECcC---CceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccccc------ccc
Q 006825 468 GRYLASAGEDCVIHVWQVVE---SERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRS------INR 538 (630)
Q Consensus 468 G~~LASgS~DgtIrVWDl~t---g~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~------~~~ 538 (630)
..+|+|+|+|.+||+|.-.. -.+..+ +.+|...|.+++|++.|..+++++.|+++++|..... ...
T Consensus 162 ~dlL~S~SYDnTIk~~~~~~dddW~c~~t-----l~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~~~~sr~~ 236 (312)
T KOG0645|consen 162 EDLLFSCSYDNTIKVYRDEDDDDWECVQT-----LDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLSGMHSRAL 236 (312)
T ss_pred cceeEEeccCCeEEEEeecCCCCeeEEEE-----ecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcchhcccce
Confidence 99999999999999998763 235555 4899999999999999999999999999999983221 111
Q ss_pred cccccC-cccc------ccEEEeCCCC---c----eE-EeccCCCCEEEEEEcCC--CeEEEEECCCcEEEEeCC
Q 006825 539 KSLSLD-HMVV------PETVFALSDK---P----IC-SFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLS 596 (630)
Q Consensus 539 ~s~s~d-~~i~------~~~Vwdlsgk---~----l~-tL~GHs~~V~sLafSPd--~~LaSgS~DgtVrIWDl~ 596 (630)
..+... +.+. ..++|..... + +. .-..|...|++|+|.|. ++|++|+.||+|++|.+.
T Consensus 237 Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 237 YDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred EeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 212222 1111 1155554321 1 11 22469999999999995 999999999999999874
No 13
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=3.2e-29 Score=275.55 Aligned_cols=320 Identities=18% Similarity=0.216 Sum_probs=260.2
Q ss_pred eeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEE---------------------EEeeecCCCceeEEE
Q 006825 261 MSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEF---------------------VVNEIQEDGTWKKVK 319 (630)
Q Consensus 261 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~---------------------~v~e~~~dg~~~~l~ 319 (630)
+.++||.++|..+ ......+||.|+.|+.. ++..++.||. .++|
T Consensus 68 ~~l~~d~~~L~~a--------------~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~-v~VW 132 (775)
T KOG0319|consen 68 LALTPDEEVLVTA--------------SRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGR-VKVW 132 (775)
T ss_pred eeecCCccEEEEe--------------eccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccce-EEEE
Confidence 7899999999444 45667899999887421 1233445554 6799
Q ss_pred EcCCCceEeeecceeeecCccceeEEEeec-----ceEeecCCCccEecccCCCCc-eeEEecCCccCCEEEEEEcCCCC
Q 006825 320 EVGTGRQLTIEEFEMCVGHSPIVQELMRRQ-----NVEEGNKDSFDLNNNGSSGGG-MKSKKKGSWFKSIRTVASSVTGH 393 (630)
Q Consensus 320 dv~TG~~lt~eef~~l~GHs~~V~~Lafs~-----~laSgS~D~tvr~vWD~~tG~-~~~~lk~gH~~~V~sVAfSpdG~ 393 (630)
|..-+-++ +.|.||.+.|..+.|.| .|++|..|++++ +||..++. ++++++ .|...|++++|++|+.
T Consensus 133 di~~~~~t-----h~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~-vwnl~~~~tcl~~~~-~H~S~vtsL~~~~d~~ 205 (775)
T KOG0319|consen 133 DIKNGYCT-----HSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVR-VWNLNDKRTCLHTMI-LHKSAVTSLAFSEDSL 205 (775)
T ss_pred EeeCCEEE-----EEecCCCceEEEEEeCCccchhheeecCCCceEE-EEEcccCchHHHHHH-hhhhheeeeeeccCCc
Confidence 99999999 99999999999999999 589999999999 99998665 488888 9999999999999998
Q ss_pred eEEeecCCC-----------------------------C-----------------------------------------
Q 006825 394 KERRSSDER-----------------------------D----------------------------------------- 403 (630)
Q Consensus 394 ~lasgS~D~-----------------------------d----------------------------------------- 403 (630)
-+.+++.|+ +
T Consensus 206 ~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~ 285 (775)
T KOG0319|consen 206 ELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEID 285 (775)
T ss_pred eEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhh
Confidence 888766665 0
Q ss_pred ---------------------------------------------------------Cc---------------cccCCc
Q 006825 404 ---------------------------------------------------------TS---------------SEKGGR 411 (630)
Q Consensus 404 ---------------------------------------------------------t~---------------s~~gh~ 411 (630)
+. ...||.
T Consensus 286 ~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~ 365 (775)
T KOG0319|consen 286 HLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHT 365 (775)
T ss_pred cceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCch
Confidence 00 046777
Q ss_pred ceEEEeecC--CCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCC-CEEEEEeCCCcEEEEECcCC
Q 006825 412 RSSSATDDS--QDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDG-RYLASAGEDCVIHVWQVVES 488 (630)
Q Consensus 412 ~~Vsa~~~s--~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG-~~LASgS~DgtIrVWDl~tg 488 (630)
-.|.+++.. .+.+++++.|.+|++|.+..+ .....+++...||+..|.+|+++..+ .+|+|+|.|++||+|++...
T Consensus 366 e~vlSL~~~~~g~llat~sKD~svilWr~~~~-~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s 444 (775)
T KOG0319|consen 366 EAVLSLDVWSSGDLLATGSKDKSVILWRLNNN-CSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKS 444 (775)
T ss_pred hheeeeeecccCcEEEEecCCceEEEEEecCC-cchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCc
Confidence 778877733 334899999999999987332 23334677889999999999998754 59999999999999999763
Q ss_pred ceeeeee----cccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEe
Q 006825 489 ERKGELL----EKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSF 563 (630)
Q Consensus 489 ~~~~~l~----~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL 563 (630)
+.....+ ......|...|.+++++|+.++|++|+.|++. ++|++ ....+.+|
T Consensus 445 ~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDkta-----------------------KiW~le~~~l~~vL 501 (775)
T KOG0319|consen 445 KETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTA-----------------------KIWDLEQLRLLGVL 501 (775)
T ss_pred ccccccceehhhHHHHhhcccccceEecCCCceEEecccccce-----------------------eeecccCceEEEEe
Confidence 2221111 12346789999999999999999999999999 78887 67889999
Q ss_pred ccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcEEEEecc
Q 006825 564 QGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLRFAYGAF 626 (630)
Q Consensus 564 ~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~lAsgs~ 626 (630)
.||+..|.+|.|+|. +.|+|+|.|+|||||.+.+..|+++|. |...|.-+. -.++..|.+++.
T Consensus 502 sGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~a 567 (775)
T KOG0319|consen 502 SGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGA 567 (775)
T ss_pred eCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccC
Confidence 999999999999998 999999999999999999999999999 999998888 556666666543
No 14
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=8.8e-28 Score=256.24 Aligned_cols=339 Identities=18% Similarity=0.160 Sum_probs=247.9
Q ss_pred eecCCCCcccCCCccccccCCCCCcccccccEEEEECCC------------------------CcEEEEeeecCCCceeE
Q 006825 262 SINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDN------------------------GKEFVVNEIQEDGTWKK 317 (630)
Q Consensus 262 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Ldd------------------------G~~~~v~e~~~dg~~~~ 317 (630)
.+||+|-|| |+++.-+.+|||+.-. ++++++..+|.+- ..+
T Consensus 66 kySPsG~yi--------------ASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrer-fg~ 130 (603)
T KOG0318|consen 66 KYSPSGFYI--------------ASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRER-FGH 130 (603)
T ss_pred EeCCCceEE--------------eecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccc-eeE
Confidence 899999999 7788888999988643 3333332222221 222
Q ss_pred EEEcCCCceEeeecceeeecCccceeEEEeec----ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCC
Q 006825 318 VKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGH 393 (630)
Q Consensus 318 l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~ 393 (630)
+.--.||..+ ..+.||+..|.++.|.| .++|||.|+++- ++.--.-+-..+++ .|.+-|++|-|+|||.
T Consensus 131 ~F~~DSG~Sv-----Gei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~-ffeGPPFKFk~s~r-~HskFV~~VRysPDG~ 203 (603)
T KOG0318|consen 131 VFLWDSGNSV-----GEITGHSRRINSVDFKPSRPFRIATGSDDNTVA-FFEGPPFKFKSSFR-EHSKFVNCVRYSPDGS 203 (603)
T ss_pred EEEecCCCcc-----ceeeccceeEeeeeccCCCceEEEeccCCCeEE-EeeCCCeeeeeccc-ccccceeeEEECCCCC
Confidence 2222244444 67899999999999988 799999999999 88776666677777 8999999999999999
Q ss_pred eEEeecCCC--------------CCccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccc------------
Q 006825 394 KERRSSDER--------------DTSSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTA------------ 445 (630)
Q Consensus 394 ~lasgS~D~--------------dt~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~------------ 445 (630)
++++.+.|+ +.....+|+..|.++.++||. +++.+.|.++++||+.+..+..
T Consensus 204 ~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqq 283 (603)
T KOG0318|consen 204 RFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQ 283 (603)
T ss_pred eEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceE
Confidence 999988877 122266899999999999998 9999999999999998654321
Q ss_pred --------------------------eeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccc
Q 006825 446 --------------------------LYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQE 499 (630)
Q Consensus 446 --------------------------~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~ 499 (630)
...+++++||...|+++..+||+++|+||+.||.|.-|+..++..-+.. -
T Consensus 284 vG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~----g 359 (603)
T KOG0318|consen 284 VGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLA----G 359 (603)
T ss_pred EEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccc----c
Confidence 1123677899999999999999999999999999999999887654432 2
Q ss_pred cCcccceEEEEECCCCCEEEEeeCCCeeeeecccc-----c---------c-----------------------------
Q 006825 500 DGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGR-----S---------I----------------------------- 536 (630)
Q Consensus 500 ~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~-----~---------~----------------------------- 536 (630)
.+|...|..++.+..+.++ +.+.|.++++..... . .
T Consensus 360 ~~h~nqI~~~~~~~~~~~~-t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~ 438 (603)
T KOG0318|consen 360 KGHTNQIKGMAASESGELF-TIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVS 438 (603)
T ss_pred ccccceEEEEeecCCCcEE-EEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcce
Confidence 5566666666655444433 333444444332100 0 0
Q ss_pred --------cccccccCcccc-------ccEEEeCCCC---ceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCC
Q 006825 537 --------NRKSLSLDHMVV-------PETVFALSDK---PICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSS 597 (630)
Q Consensus 537 --------~~~s~s~d~~i~-------~~~Vwdlsgk---~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~t 597 (630)
....++++...+ .-+++.+.|. ....+..|..+|++++|||| .|||+|-..+.|-+||+.+
T Consensus 439 ~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s 518 (603)
T KOG0318|consen 439 SIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVAS 518 (603)
T ss_pred eeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEccc
Confidence 000011111100 0156777552 33346779999999999999 9999999999999999999
Q ss_pred CcEEEE-Ee-cCCceEEEE-cCCCcEEEEecce
Q 006825 598 KTCLKI-FS-HSDYDISLV-DRLMLRFAYGAFL 627 (630)
Q Consensus 598 g~~l~t-~~-H~~~V~sVa-s~~~~~lAsgs~~ 627 (630)
.+.... .. |+..|.||+ +|+...+|+|+.+
T Consensus 519 ~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlD 551 (603)
T KOG0318|consen 519 REVKTNRWAFHTAKINCVAWSPNNKLVATGSLD 551 (603)
T ss_pred CceecceeeeeeeeEEEEEeCCCceEEEecccc
Confidence 887322 23 999999999 9999999999865
No 15
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.97 E-value=1.1e-28 Score=248.10 Aligned_cols=235 Identities=16% Similarity=0.190 Sum_probs=205.7
Q ss_pred eecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCccc
Q 006825 262 SINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPI 341 (630)
Q Consensus 262 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~ 341 (630)
+++|.|+++ |.+-.|+.|.|++|..-+ .+|...+. ..|.||+..
T Consensus 104 A~sPSg~~V--------------AcGGLdN~Csiy~ls~~d--------~~g~~~v~--------------r~l~gHtgy 147 (343)
T KOG0286|consen 104 AYSPSGNFV--------------ACGGLDNKCSIYPLSTRD--------AEGNVRVS--------------RELAGHTGY 147 (343)
T ss_pred EECCCCCeE--------------EecCcCceeEEEeccccc--------ccccceee--------------eeecCccce
Confidence 999999999 788899999999995321 12221111 456899999
Q ss_pred eeEEEeec--ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcC-CCCeEEeecCCCCCccccCCcceEEEee
Q 006825 342 VQELMRRQ--NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSV-TGHKERRSSDERDTSSEKGGRRSSSATD 418 (630)
Q Consensus 342 V~~Lafs~--~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSp-dG~~lasgS~D~dt~s~~gh~~~Vsa~~ 418 (630)
+.+..|-+ .|++||.|.|+. +||+++|+....+. ||.+-|.+++++| +++.+
T Consensus 148 lScC~f~dD~~ilT~SGD~TCa-lWDie~g~~~~~f~-GH~gDV~slsl~p~~~ntF----------------------- 202 (343)
T KOG0286|consen 148 LSCCRFLDDNHILTGSGDMTCA-LWDIETGQQTQVFH-GHTGDVMSLSLSPSDGNTF----------------------- 202 (343)
T ss_pred eEEEEEcCCCceEecCCCceEE-EEEcccceEEEEec-CCcccEEEEecCCCCCCeE-----------------------
Confidence 99999988 899999999999 99999999999999 9999999999999 77666
Q ss_pred cCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeeccc
Q 006825 419 DSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQ 498 (630)
Q Consensus 419 ~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~ 498 (630)
++|+-|.+.++||++.+ .++|+|.||..-|++|+|.|+|.-++||++|+++|+||++..+.+..+-
T Consensus 203 ------vSg~cD~~aklWD~R~~-----~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys--- 268 (343)
T KOG0286|consen 203 ------VSGGCDKSAKLWDVRSG-----QCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYS--- 268 (343)
T ss_pred ------EecccccceeeeeccCc-----ceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeec---
Confidence 45666778999999766 4899999999999999999999999999999999999999888776642
Q ss_pred ccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcC
Q 006825 499 EDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSK 577 (630)
Q Consensus 499 ~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSP 577 (630)
......+|.+++|+..|++|.+|..|.++ .+|+. .++.+..|.||.+.|.+|..+|
T Consensus 269 ~~~~~~gitSv~FS~SGRlLfagy~d~~c-----------------------~vWDtlk~e~vg~L~GHeNRvScl~~s~ 325 (343)
T KOG0286|consen 269 HDSIICGITSVAFSKSGRLLFAGYDDFTC-----------------------NVWDTLKGERVGVLAGHENRVSCLGVSP 325 (343)
T ss_pred cCcccCCceeEEEcccccEEEeeecCCce-----------------------eEeeccccceEEEeeccCCeeEEEEECC
Confidence 24445789999999999999999999999 78887 8899999999999999999999
Q ss_pred C-CeEEEEECCCcEEEEe
Q 006825 578 S-QHLLSSSMDKTVRLWH 594 (630)
Q Consensus 578 d-~~LaSgS~DgtVrIWD 594 (630)
| .-|+|||+|.++|||.
T Consensus 326 DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 326 DGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CCcEEEecchhHheeecC
Confidence 9 8899999999999994
No 16
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=2.2e-29 Score=274.72 Aligned_cols=310 Identities=15% Similarity=0.160 Sum_probs=236.4
Q ss_pred ccccCCcceeeecCCCCCCcccCCCC----CC---CCCCcccccc---ccccceeeeccCCCCCCCCCCCcccccccCCC
Q 006825 175 LSVCSPSILSIHCSSLDSPRVNNGNS----ND---NDSSNVSYNV---DQNQSVLVRKSPSGNSNNGSSPVASAALSNKP 244 (630)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (630)
..+|+|+..|+||++|+|||+|+..+ .- ||++-.+.++ |.+|+.|.+.+.+..-+.+... -.|
T Consensus 386 ~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~-------~d~ 458 (1080)
T KOG1408|consen 386 TAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVST-------CDS 458 (1080)
T ss_pred ccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhh-------cCc
Confidence 45799999999999999999999887 22 9999999998 9999999888877433322211 111
Q ss_pred CCCCCCccccccCCCceeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEEEEeeecCCCceeEEEEcCCC
Q 006825 245 PTGRNCKRMDESRGDSMSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTG 324 (630)
Q Consensus 245 ~~~~~~~~~d~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG 324 (630)
-.|-.| +++||||||| |+++..++++|++|..-++....
T Consensus 459 r~G~R~----------~~vSp~gqhL--------------AsGDr~GnlrVy~Lq~l~~~~~~----------------- 497 (1080)
T KOG1408|consen 459 RFGFRA----------LAVSPDGQHL--------------ASGDRGGNLRVYDLQELEYTCFM----------------- 497 (1080)
T ss_pred ccceEE----------EEECCCccee--------------cccCccCceEEEEehhhhhhhhe-----------------
Confidence 122222 8999999999 88899999999999665444333
Q ss_pred ceEeeecceeeecCccceeEEEeec------ceEeecCCCccEecccCCC-CceeEEecCCccCCEEEEEEcCCCCeEEe
Q 006825 325 RQLTIEEFEMCVGHSPIVQELMRRQ------NVEEGNKDSFDLNNNGSSG-GGMKSKKKGSWFKSIRTVASSVTGHKERR 397 (630)
Q Consensus 325 ~~lt~eef~~l~GHs~~V~~Lafs~------~laSgS~D~tvr~vWD~~t-G~~~~~lk~gH~~~V~sVAfSpdG~~las 397 (630)
..|..-|.+|.|+. .||++|.|+.|. |+|+.. ...++++- +|...|++|.|.-.|-
T Consensus 498 -----------eAHesEilcLeyS~p~~~~kLLASasrdRlIH-V~Dv~rny~l~qtld-~HSssITsvKFa~~gl---- 560 (1080)
T KOG1408|consen 498 -----------EAHESEILCLEYSFPVLTNKLLASASRDRLIH-VYDVKRNYDLVQTLD-GHSSSITSVKFACNGL---- 560 (1080)
T ss_pred -----------ecccceeEEEeecCchhhhHhhhhccCCceEE-EEecccccchhhhhc-ccccceeEEEEeecCC----
Confidence 34556667777765 699999999999 999865 55777887 9999999999988661
Q ss_pred ecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCC
Q 006825 398 SSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED 477 (630)
Q Consensus 398 gS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~D 477 (630)
...+++|.++....+-+.-..+..+++- ..+-.--+..++.|+..|..++++++++|
T Consensus 561 ------------n~~MiscGADksimFr~~qk~~~g~~f~-----------r~t~t~~ktTlYDm~Vdp~~k~v~t~cQD 617 (1080)
T KOG1408|consen 561 ------------NRKMISCGADKSIMFRVNQKASSGRLFP-----------RHTQTLSKTTLYDMAVDPTSKLVVTVCQD 617 (1080)
T ss_pred ------------ceEEEeccCchhhheehhccccCceecc-----------ccccccccceEEEeeeCCCcceEEEEecc
Confidence 1122222222221111111111112211 11111123578999999999999999999
Q ss_pred CcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-C
Q 006825 478 CVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-S 556 (630)
Q Consensus 478 gtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-s 556 (630)
+.|+||++..++..+.+ +...+|.+....+...|.|.|+++...|+++ .++|. +
T Consensus 618 rnirif~i~sgKq~k~F--Kgs~~~eG~lIKv~lDPSgiY~atScsdktl-----------------------~~~Df~s 672 (1080)
T KOG1408|consen 618 RNIRIFDIESGKQVKSF--KGSRDHEGDLIKVILDPSGIYLATSCSDKTL-----------------------CFVDFVS 672 (1080)
T ss_pred cceEEEeccccceeeee--cccccCCCceEEEEECCCccEEEEeecCCce-----------------------EEEEecc
Confidence 99999999999988876 3346788888899999999999999999999 88888 9
Q ss_pred CCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCC
Q 006825 557 DKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSS 597 (630)
Q Consensus 557 gk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~t 597 (630)
|+++.++.||...|+.+.|.+| +.|++.+.||.|.||.+..
T Consensus 673 gEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 673 GECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred chhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 9999999999999999999999 9999999999999999864
No 17
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=2.8e-28 Score=270.41 Aligned_cols=229 Identities=24% Similarity=0.248 Sum_probs=200.0
Q ss_pred eeeecCccceeEEEeec---ceEeecCCCccEecccC-CCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCcccc
Q 006825 333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGS-SGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEK 408 (630)
Q Consensus 333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~-~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~ 408 (630)
..+.||...|..++|+| .+++++.|+++| +||+ ..+..+++++ ||...|.+++|+|+|+++
T Consensus 197 ~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tir-iwd~~~~~~~~~~l~-gH~~~v~~~~f~p~g~~i------------- 261 (456)
T KOG0266|consen 197 RELSGHTRGVSDVAFSPDGSYLLSGSDDKTLR-IWDLKDDGRNLKTLK-GHSTYVTSVAFSPDGNLL------------- 261 (456)
T ss_pred ccccccccceeeeEECCCCcEEEEecCCceEE-EeeccCCCeEEEEec-CCCCceEEEEecCCCCEE-------------
Confidence 55589999999999999 899999999999 9999 6679999999 999999999999998766
Q ss_pred CCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCC
Q 006825 409 GGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVES 488 (630)
Q Consensus 409 gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg 488 (630)
++|+.|++||+||+.+++ ++..|.+|.+.|.+++|+++|++|++++.|++|+|||+.++
T Consensus 262 ----------------~Sgs~D~tvriWd~~~~~-----~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~ 320 (456)
T KOG0266|consen 262 ----------------VSGSDDGTVRIWDVRTGE-----CVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETG 320 (456)
T ss_pred ----------------EEecCCCcEEEEeccCCe-----EEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCC
Confidence 556677799999998854 68899999999999999999999999999999999999999
Q ss_pred c--eeeeeecccccCccc--ceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEe
Q 006825 489 E--RKGELLEKQEDGHLN--MLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSF 563 (630)
Q Consensus 489 ~--~~~~l~~~~~~gh~~--~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL 563 (630)
. +..++ .++.. .+..+.|+|++.+++++..|+.+ ++|++ .+..+..+
T Consensus 321 ~~~~~~~~-----~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~-----------------------~~w~l~~~~~~~~~ 372 (456)
T KOG0266|consen 321 SKLCLKLL-----SGAENSAPVTSVQFSPNGKYLLSASLDRTL-----------------------KLWDLRSGKSVGTY 372 (456)
T ss_pred ceeeeecc-----cCCCCCCceeEEEECCCCcEEEEecCCCeE-----------------------EEEEccCCcceeee
Confidence 8 44553 44433 59999999999999999999999 88888 58899999
Q ss_pred ccCCCCEEE---EEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-c-CCceEEEE-cCCCcEEEEec
Q 006825 564 QGHLDDVLD---LSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-H-SDYDISLV-DRLMLRFAYGA 625 (630)
Q Consensus 564 ~GHs~~V~s---LafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H-~~~V~sVa-s~~~~~lAsgs 625 (630)
.+|...+++ ..+++. .++++|+.|+.|++||+.++..+..+. | ...|..+. ++....+++.+
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s 441 (456)
T KOG0266|consen 373 TGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSS 441 (456)
T ss_pred cccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecC
Confidence 999986433 334556 899999999999999999999888888 8 78888888 88888888776
No 18
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.96 E-value=8e-27 Score=248.96 Aligned_cols=323 Identities=15% Similarity=0.187 Sum_probs=262.6
Q ss_pred CCcccccccEEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCcc
Q 006825 284 GTAGVAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFD 360 (630)
Q Consensus 284 ~~~~~~~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tv 360 (630)
.-+.++...+.|..-..|..++.- .|....++++...... ..+.+|+-.|+-.-|+| ++|||-.-++|
T Consensus 13 lPst~Rg~~~~ig~dpkgd~ilY~----nGksv~ir~i~~~~~~-----~iYtEH~~~vtVAkySPsG~yiASGD~sG~v 83 (603)
T KOG0318|consen 13 LPSTERGVPIIIGGDPKGDNILYT----NGKSVIIRNIDNPASV-----DIYTEHAHQVTVAKYSPSGFYIASGDVSGKV 83 (603)
T ss_pred CCcccCCcceEeccCCCCCeEEEe----CCCEEEEEECCCccce-----eeeccccceeEEEEeCCCceEEeecCCcCcE
Confidence 345567777888777777766654 4566778888876666 78889999999999999 89999999999
Q ss_pred EecccCCCCc--eeEEecCCccCCEEEEEEcCCCCeEEeecCCC---------CC----ccccCCcceEEEeecCCCe--
Q 006825 361 LNNNGSSGGG--MKSKKKGSWFKSIRTVASSVTGHKERRSSDER---------DT----SSEKGGRRSSSATDDSQDV-- 423 (630)
Q Consensus 361 r~vWD~~tG~--~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~---------dt----~s~~gh~~~Vsa~~~s~d~-- 423 (630)
| |||...-+ .+.+++ -..++|+.++|++|+++|+..++.+ |+ +...||.+.|.+.+|.+..
T Consensus 84 R-IWdtt~~~hiLKnef~-v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPf 161 (603)
T KOG0318|consen 84 R-IWDTTQKEHILKNEFQ-VLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPF 161 (603)
T ss_pred E-EEeccCcceeeeeeee-ecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCCce
Confidence 9 99986533 334555 6788999999999999999988776 33 3489999999999999876
Q ss_pred -EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCc
Q 006825 424 -SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGH 502 (630)
Q Consensus 424 -l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh 502 (630)
+++|++|.+|-+|.- ..+....++..|..-|+|+.|+|||.++||+|.||+|.|||-.+++.+.+|-. ..+|
T Consensus 162 Ri~T~sdDn~v~ffeG-----PPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~--~~aH 234 (603)
T KOG0318|consen 162 RIATGSDDNTVAFFEG-----PPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELED--SDAH 234 (603)
T ss_pred EEEeccCCCeEEEeeC-----CCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecC--CCCc
Confidence 999999999999954 23344578889999999999999999999999999999999999999988632 4699
Q ss_pred ccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCcccc---ccEE-----------------EeC-CCCceE
Q 006825 503 LNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVV---PETV-----------------FAL-SDKPIC 561 (630)
Q Consensus 503 ~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~---~~~V-----------------wdl-sgk~l~ 561 (630)
.+.|++++|+||++.+++++.|.++++|+........++.....+. -..+ ++. ...+++
T Consensus 235 kGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~ 314 (603)
T KOG0318|consen 235 KGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLK 314 (603)
T ss_pred cccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhh
Confidence 9999999999999999999999999999987654444443333211 1122 333 346788
Q ss_pred EeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe--cCCceEEEE-cCCCcEEEEe
Q 006825 562 SFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYDISLV-DRLMLRFAYG 624 (630)
Q Consensus 562 tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~--H~~~V~sVa-s~~~~~lAsg 624 (630)
++.||...|++|+.+|+ .+|+||+.||.|.-|+..+|.+-+.+. |...|.+++ ...+.++..+
T Consensus 315 ~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g 381 (603)
T KOG0318|consen 315 VISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIG 381 (603)
T ss_pred eecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEe
Confidence 89999999999999999 999999999999999999999887764 999999999 4434444444
No 19
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.96 E-value=5e-28 Score=248.37 Aligned_cols=259 Identities=14% Similarity=0.146 Sum_probs=228.2
Q ss_pred eeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-----CC
Q 006825 333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-----DT 404 (630)
Q Consensus 333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-----dt 404 (630)
..+.||.+.|++|++-| .+++||.|+|++ |||++||+.+.++. ||...|+.||+|+.-.|+-+++.|+ |.
T Consensus 145 rVi~gHlgWVr~vavdP~n~wf~tgs~Drtik-IwDlatg~Lkltlt-Ghi~~vr~vavS~rHpYlFs~gedk~VKCwDL 222 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIK-IWDLATGQLKLTLT-GHIETVRGVAVSKRHPYLFSAGEDKQVKCWDL 222 (460)
T ss_pred hhhhhccceEEEEeeCCCceeEEecCCCceeE-EEEcccCeEEEeec-chhheeeeeeecccCceEEEecCCCeeEEEec
Confidence 56789999999999999 799999999999 99999999999999 9999999999999999999999998 22
Q ss_pred c------cccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeC
Q 006825 405 S------SEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE 476 (630)
Q Consensus 405 ~------s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~ 476 (630)
. .--||-..|.|++..+.. +++|+.|.++|+||+.++. .+.+|.||+.+|..|.+.|-...++|||.
T Consensus 223 e~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~-----~V~~l~GH~~~V~~V~~~~~dpqvit~S~ 297 (460)
T KOG0285|consen 223 EYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA-----SVHVLSGHTNPVASVMCQPTDPQVITGSH 297 (460)
T ss_pred hhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccc-----eEEEecCCCCcceeEEeecCCCceEEecC
Confidence 2 267899999999999654 9999999999999999885 57899999999999999997777999999
Q ss_pred CCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-
Q 006825 477 DCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL- 555 (630)
Q Consensus 477 DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl- 555 (630)
|++||+||+..|+....+ ..|...|.+++.+|....+++++.|.. +-|++
T Consensus 298 D~tvrlWDl~agkt~~tl-----t~hkksvral~lhP~e~~fASas~dni------------------------k~w~~p 348 (460)
T KOG0285|consen 298 DSTVRLWDLRAGKTMITL-----THHKKSVRALCLHPKENLFASASPDNI------------------------KQWKLP 348 (460)
T ss_pred CceEEEeeeccCceeEee-----ecccceeeEEecCCchhhhhccCCccc------------------------eeccCC
Confidence 999999999999988875 789999999999999999999987764 56777
Q ss_pred CCCceEEeccCCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEe---------cCCceEEEE-cCCCcEEEEec
Q 006825 556 SDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS---------HSDYDISLV-DRLMLRFAYGA 625 (630)
Q Consensus 556 sgk~l~tL~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~l~t~~---------H~~~V~sVa-s~~~~~lAsgs 625 (630)
.|..++.+.||..-|++|+...|+++++|+..|.|.+||.++|-..+.+. ....|.+.+ +..+..|.++.
T Consensus 349 ~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~e 428 (460)
T KOG0285|consen 349 EGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGE 428 (460)
T ss_pred ccchhhccccccceeeeeeeccCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEecc
Confidence 78888889999999999999988999999999999999999986655442 234456666 77788888875
Q ss_pred ce
Q 006825 626 FL 627 (630)
Q Consensus 626 ~~ 627 (630)
.+
T Consensus 429 ad 430 (460)
T KOG0285|consen 429 AD 430 (460)
T ss_pred CC
Confidence 44
No 20
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.96 E-value=2.2e-27 Score=250.61 Aligned_cols=256 Identities=18% Similarity=0.253 Sum_probs=213.8
Q ss_pred eeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCcc
Q 006825 261 MSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSP 340 (630)
Q Consensus 261 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~ 340 (630)
+.-|.+|..| +++.+++..|||+.+ |.++ .+|.-|.+
T Consensus 241 L~Wn~~G~~L--------------atG~~~G~~riw~~~------------------------G~l~-----~tl~~Hkg 277 (524)
T KOG0273|consen 241 LDWNNDGTLL--------------ATGSEDGEARIWNKD------------------------GNLI-----STLGQHKG 277 (524)
T ss_pred EEecCCCCeE--------------EEeecCcEEEEEecC------------------------chhh-----hhhhccCC
Confidence 6667777777 666677777777763 3333 56777999
Q ss_pred ceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEe
Q 006825 341 IVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSAT 417 (630)
Q Consensus 341 ~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~ 417 (630)
+|.+|-++. +|++++.|+|+. +||+.+|+..+.+. -|...-..|-|--
T Consensus 278 PI~slKWnk~G~yilS~~vD~tti-lwd~~~g~~~q~f~-~~s~~~lDVdW~~--------------------------- 328 (524)
T KOG0273|consen 278 PIFSLKWNKKGTYILSGGVDGTTI-LWDAHTGTVKQQFE-FHSAPALDVDWQS--------------------------- 328 (524)
T ss_pred ceEEEEEcCCCCEEEeccCCccEE-EEeccCceEEEeee-eccCCccceEEec---------------------------
Confidence 999999987 899999999999 99999999999888 5555422233322
Q ss_pred ecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecc
Q 006825 418 DDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEK 497 (630)
Q Consensus 418 ~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~ 497 (630)
.+-+++.+.|+.|+++.+..+. ++.++.||++.|.+|.|+|.|.+|+|+|.|+|+|||......+...|
T Consensus 329 ---~~~F~ts~td~~i~V~kv~~~~-----P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l--- 397 (524)
T KOG0273|consen 329 ---NDEFATSSTDGCIHVCKVGEDR-----PVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDL--- 397 (524)
T ss_pred ---CceEeecCCCceEEEEEecCCC-----cceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhh---
Confidence 1236777889999999887664 47889999999999999999999999999999999999888777774
Q ss_pred cccCcccceEEEEECCCC---------CEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCC
Q 006825 498 QEDGHLNMLLLANGSPEP---------TSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHL 567 (630)
Q Consensus 498 ~~~gh~~~V~svafSpdg---------~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs 567 (630)
.+|...|+.+.|+|.| ..+++++.|.+| ++|++ .+.++++|..|+
T Consensus 398 --~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV-----------------------~lwdv~~gv~i~~f~kH~ 452 (524)
T KOG0273|consen 398 --QAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTV-----------------------KLWDVESGVPIHTLMKHQ 452 (524)
T ss_pred --hhhccceeeEeecCCCCccCCCcCCceEEEeecCCeE-----------------------EEEEccCCceeEeeccCC
Confidence 8999999999999974 567788888888 89998 899999999999
Q ss_pred CCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEecCCceEEEE-cCCCcEEEEe
Q 006825 568 DDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYDISLV-DRLMLRFAYG 624 (630)
Q Consensus 568 ~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~H~~~V~sVa-s~~~~~lAsg 624 (630)
.+|++|+|+|+ .|||+|+.||.|.||++++++.++.+..++.|..|. +..+..++..
T Consensus 453 ~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~ 511 (524)
T KOG0273|consen 453 EPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGAC 511 (524)
T ss_pred CceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEE
Confidence 99999999999 999999999999999999999999999888999999 5555555443
No 21
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.96 E-value=1.9e-27 Score=234.94 Aligned_cols=251 Identities=16% Similarity=0.136 Sum_probs=214.0
Q ss_pred ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC----C--------CccccCCcceEEEe
Q 006825 350 NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER----D--------TSSEKGGRRSSSAT 417 (630)
Q Consensus 350 ~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~----d--------t~s~~gh~~~Vsa~ 417 (630)
+|||++.|-||| +|...||.|.+++. .-...|+.+...||+++||.+.... | .....+|.+-|.++
T Consensus 12 iLvsA~YDhTIR-fWqa~tG~C~rTiq-h~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 12 ILVSAGYDHTIR-FWQALTGICSRTIQ-HPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred EEEeccCcceee-eeehhcCeEEEEEe-cCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEE
Confidence 699999999999 99999999999998 6778999999999999999988765 2 22378999999999
Q ss_pred ecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeee
Q 006825 418 DDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELL 495 (630)
Q Consensus 418 ~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~ 495 (630)
.|..++ +++|++||++||||++... .+.+..|..+|++|..+|+-..|++|..+|.|+|||+.+..+..+++
T Consensus 90 gF~~dgrWMyTgseDgt~kIWdlR~~~------~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~li 163 (311)
T KOG0315|consen 90 GFQCDGRWMYTGSEDGTVKIWDLRSLS------CQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELI 163 (311)
T ss_pred EEeecCeEEEecCCCceEEEEeccCcc------cchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccC
Confidence 999999 9999999999999997642 45556688999999999999999999999999999999887777763
Q ss_pred cccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEE
Q 006825 496 EKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSW 575 (630)
Q Consensus 496 ~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLaf 575 (630)
......|.++...|||+.++.+-..|+..+|+...... ...-+++..|+.|...|+.+.|
T Consensus 164 ----Pe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~----------------~s~l~P~~k~~ah~~~il~C~l 223 (311)
T KOG0315|consen 164 ----PEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQT----------------ASELEPVHKFQAHNGHILRCLL 223 (311)
T ss_pred ----CCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCc----------------cccceEhhheecccceEEEEEE
Confidence 44557899999999999999999999984444322000 0012567789999999999999
Q ss_pred cCC-CeEEEEECCCcEEEEeCCCC-cEEEEEe-cCCceEEEE-cCCCcEEEEeccee
Q 006825 576 SKS-QHLLSSSMDKTVRLWHLSSK-TCLKIFS-HSDYDISLV-DRLMLRFAYGAFLN 628 (630)
Q Consensus 576 SPd-~~LaSgS~DgtVrIWDl~tg-~~l~t~~-H~~~V~sVa-s~~~~~lAsgs~~n 628 (630)
||+ ++||++|.|++|+||++++. +.-..+. |..+|+..+ +.++.+|.+++.++
T Consensus 224 SPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~ 280 (311)
T KOG0315|consen 224 SPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDH 280 (311)
T ss_pred CCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCC
Confidence 999 99999999999999999987 5555566 999999999 99999999998764
No 22
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=7.6e-28 Score=247.76 Aligned_cols=251 Identities=20% Similarity=0.175 Sum_probs=225.3
Q ss_pred EEEeeecCCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCC-CceeEEecCCc
Q 006825 304 FVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSG-GGMKSKKKGSW 379 (630)
Q Consensus 304 ~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~t-G~~~~~lk~gH 379 (630)
+++....+|++ .++||..||+.+ ..|.||+..|..++|.. +||+.|.|-.+. +||..+ .++++.+. ||
T Consensus 121 ~~v~~as~d~t-ikv~D~~tg~~e-----~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~-LWd~~~~~~c~ks~~-gh 192 (406)
T KOG0295|consen 121 ALVVSASEDAT-IKVFDTETGELE-----RSLRGHTDSVFDISFDASGKYLATCSSDLSAK-LWDFDTFFRCIKSLI-GH 192 (406)
T ss_pred eEEEEecCCce-EEEEEccchhhh-----hhhhccccceeEEEEecCccEEEecCCccchh-heeHHHHHHHHHHhc-Cc
Confidence 34433334444 679999999997 89999999999999988 899999999999 999987 56676766 99
Q ss_pred cCCEEEEEEcCCCCeEEeecCCC-------CC----ccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccce
Q 006825 380 FKSIRTVASSVTGHKERRSSDER-------DT----SSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTAL 446 (630)
Q Consensus 380 ~~~V~sVAfSpdG~~lasgS~D~-------dt----~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~ 446 (630)
.-.|.+|+|-|-|.++++.+.|+ ++ ..+.+|.-.|..++..+|+ +++++.|-+|++|-..+++
T Consensus 193 ~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~---- 268 (406)
T KOG0295|consen 193 EHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQ---- 268 (406)
T ss_pred ccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccch----
Confidence 99999999999999999999998 23 3489999999999999999 7899999999999988875
Q ss_pred eeeeEecccCcCEEEEEEccC---------------CCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEE
Q 006825 447 YKCQEIQAHNGSIWSIKFSLD---------------GRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANG 511 (630)
Q Consensus 447 ~~v~tL~gHt~~V~sVaFSpD---------------G~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svaf 511 (630)
|.+.|.+|..+|.|++|.|. +++|++++.|++||+||+.++.++.+| .+|...|..++|
T Consensus 269 -~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL-----~ghdnwVr~~af 342 (406)
T KOG0295|consen 269 -CKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTL-----VGHDNWVRGVAF 342 (406)
T ss_pred -hhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEE-----ecccceeeeeEE
Confidence 56789999999999999873 259999999999999999999999996 899999999999
Q ss_pred CCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCc
Q 006825 512 SPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKT 589 (630)
Q Consensus 512 Spdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~Dgt 589 (630)
+|-|+||+++.+|+++ ++|++ .+++.+++..|..-|+++.|+.+ .+++||+-|-+
T Consensus 343 ~p~Gkyi~ScaDDktl-----------------------rvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt 399 (406)
T KOG0295|consen 343 SPGGKYILSCADDKTL-----------------------RVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQT 399 (406)
T ss_pred cCCCeEEEEEecCCcE-----------------------EEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccce
Confidence 9999999999999999 89998 78999999999999999999999 99999999999
Q ss_pred EEEEeC
Q 006825 590 VRLWHL 595 (630)
Q Consensus 590 VrIWDl 595 (630)
+++|..
T Consensus 400 ~KvwEc 405 (406)
T KOG0295|consen 400 VKVWEC 405 (406)
T ss_pred eeeeec
Confidence 999964
No 23
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=4.8e-27 Score=260.52 Aligned_cols=232 Identities=21% Similarity=0.276 Sum_probs=203.4
Q ss_pred eeeecC-ccceeEEEeec---ceEeecCCCccEecccCCCCc--eeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCcc
Q 006825 333 EMCVGH-SPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGG--MKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSS 406 (630)
Q Consensus 333 ~~l~GH-s~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~--~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s 406 (630)
..+.+| ...|.++.|++ .+++++.|++++ +|+..+++ .++.+. +|...|..++|+|+|++++
T Consensus 152 ~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~-~~~~~~~~~~~~~~l~-~h~~~v~~~~fs~d~~~l~---------- 219 (456)
T KOG0266|consen 152 QTLAGHECPSVTCVDFSPDGRALAAASSDGLIR-IWKLEGIKSNLLRELS-GHTRGVSDVAFSPDGSYLL---------- 219 (456)
T ss_pred eeecccccCceEEEEEcCCCCeEEEccCCCcEE-Eeecccccchhhcccc-ccccceeeeEECCCCcEEE----------
Confidence 455554 88999999999 899999999999 99998888 788886 9999999999999998775
Q ss_pred ccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECc
Q 006825 407 EKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVV 486 (630)
Q Consensus 407 ~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~ 486 (630)
+++.|++||+||.... ..++++|+||...|++++|+|+|++|++|+.|++|||||+.
T Consensus 220 -------------------s~s~D~tiriwd~~~~----~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~ 276 (456)
T KOG0266|consen 220 -------------------SGSDDKTLRIWDLKDD----GRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVR 276 (456)
T ss_pred -------------------EecCCceEEEeeccCC----CeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEecc
Confidence 4556678999999333 23678999999999999999999999999999999999999
Q ss_pred CCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCC--ceEEe
Q 006825 487 ESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDK--PICSF 563 (630)
Q Consensus 487 tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk--~l~tL 563 (630)
++++...+ .+|...|..++|++++.+|++++.|+.| ++|++ ++. ++.++
T Consensus 277 ~~~~~~~l-----~~hs~~is~~~f~~d~~~l~s~s~d~~i-----------------------~vwd~~~~~~~~~~~~ 328 (456)
T KOG0266|consen 277 TGECVRKL-----KGHSDGISGLAFSPDGNLLVSASYDGTI-----------------------RVWDLETGSKLCLKLL 328 (456)
T ss_pred CCeEEEee-----eccCCceEEEEECCCCCEEEEcCCCccE-----------------------EEEECCCCceeeeecc
Confidence 99998885 8999999999999999999999999999 88888 555 46788
Q ss_pred ccCCCC--EEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE----cCCCcEEEEecce
Q 006825 564 QGHLDD--VLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV----DRLMLRFAYGAFL 627 (630)
Q Consensus 564 ~GHs~~--V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa----s~~~~~lAsgs~~ 627 (630)
.++... |+.++|+|+ .+|++++.|+++++||+..+.++.++. |...++|+. .+.+.++.+++.+
T Consensus 329 ~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d 400 (456)
T KOG0266|consen 329 SGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSED 400 (456)
T ss_pred cCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCC
Confidence 888776 999999999 999999999999999999999999998 777666765 6677777777644
No 24
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.96 E-value=4e-26 Score=225.04 Aligned_cols=260 Identities=22% Similarity=0.283 Sum_probs=225.2
Q ss_pred eeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-------
Q 006825 333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER------- 402 (630)
Q Consensus 333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~------- 402 (630)
.++.+|...|.++.|+| .+++++.|+.++ +|+..+++....+. +|...|..+.|+|+++++++++.++
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~-i~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~ 80 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIK-VWDLETGELLRTLK-GHTGPVRDVAASADGTYLASGSSDKTIRLWDL 80 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEE-EEEeeCCCcEEEEe-cCCcceeEEEECCCCCEEEEEcCCCeEEEEEc
Confidence 56779999999999998 789999999999 99999998888888 8999999999999999999998776
Q ss_pred C----CccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeC
Q 006825 403 D----TSSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE 476 (630)
Q Consensus 403 d----t~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~ 476 (630)
+ ......|...+.++.+.++. ++++..++.|++|+....+ ....+..|...|.+++|+|++++|++++.
T Consensus 81 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 155 (289)
T cd00200 81 ETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK-----CLTTLRGHTDWVNSVAFSPDGTFVASSSQ 155 (289)
T ss_pred CcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcE-----EEEEeccCCCcEEEEEEcCcCCEEEEEcC
Confidence 1 12256777789999988864 6677779999999997543 45677899999999999999999999998
Q ss_pred CCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-
Q 006825 477 DCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL- 555 (630)
Q Consensus 477 DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl- 555 (630)
|+.|++||+.+++....+ ..|...+.++.|+|++..+++++.++.+ .+|++
T Consensus 156 ~~~i~i~d~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l~~~~~~~~i-----------------------~i~d~~ 207 (289)
T cd00200 156 DGTIKLWDLRTGKCVATL-----TGHTGEVNSVAFSPDGEKLLSSSSDGTI-----------------------KLWDLS 207 (289)
T ss_pred CCcEEEEEccccccceeE-----ecCccccceEEECCCcCEEEEecCCCcE-----------------------EEEECC
Confidence 999999999888777664 5777899999999999999998889998 78888
Q ss_pred CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcEEEEecce
Q 006825 556 SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLRFAYGAFL 627 (630)
Q Consensus 556 sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~lAsgs~~ 627 (630)
.++.+..+.+|...|.+++|+|+ .++++++.|+.|++||+.+++++..+. |...|.+++ .+.+..+++++..
T Consensus 208 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 282 (289)
T cd00200 208 TGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSAD 282 (289)
T ss_pred CCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCC
Confidence 56788888899999999999998 788888889999999999999999988 999999999 7777777777654
No 25
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=2.5e-26 Score=252.97 Aligned_cols=283 Identities=17% Similarity=0.159 Sum_probs=221.4
Q ss_pred eeeecCccceeEEEeec---ceEeecCCCccEecccCCCCce--eEEecCCccCCEEEEEEcCCCCeEEeecCCC-----
Q 006825 333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGM--KSKKKGSWFKSIRTVASSVTGHKERRSSDER----- 402 (630)
Q Consensus 333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~--~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~----- 402 (630)
.++.||-.-|.+|-|+. .+++||.|.++| +|++..-+- ...+. ||...|-++-|..+...+.+-+.|+
T Consensus 139 r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~r-l~~v~~~k~~~~~~l~-gHkd~VvacfF~~~~~~l~tvskdG~l~~W 216 (893)
T KOG0291|consen 139 RTYLGHFDDITSIDWSDDSRLLVTGSRDLSAR-LFGVDGNKNLFTYALN-GHKDYVVACFFGANSLDLYTVSKDGALFVW 216 (893)
T ss_pred eeecCCccceeEEEeccCCceEEeccccceEE-EEEeccccccceEecc-CCCcceEEEEeccCcceEEEEecCceEEEE
Confidence 56889999999999988 899999999999 999876544 44555 9999999999998888887766554
Q ss_pred --C-------C----------------cc---------------ccCCcceEEEeecCCCe--EEEecC-----------
Q 006825 403 --D-------T----------------SS---------------EKGGRRSSSATDDSQDV--SFHGQE----------- 429 (630)
Q Consensus 403 --d-------t----------------~s---------------~~gh~~~Vsa~~~s~d~--l~Sgs~----------- 429 (630)
+ . .. +.....-|+|.+|.+.. +++|-.
T Consensus 217 ~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~ 296 (893)
T KOG0291|consen 217 TCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPD 296 (893)
T ss_pred EecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCC
Confidence 1 0 00 11111234444444322 333332
Q ss_pred --------------------------------CcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCC
Q 006825 430 --------------------------------RVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED 477 (630)
Q Consensus 430 --------------------------------Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~D 477 (630)
-|.+.+|+++...+ +...+||...|.+++++|||+++|||++|
T Consensus 297 f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsY-----VlKQQgH~~~i~~l~YSpDgq~iaTG~eD 371 (893)
T KOG0291|consen 297 FNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESY-----VLKQQGHSDRITSLAYSPDGQLIATGAED 371 (893)
T ss_pred ceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccce-----eeeccccccceeeEEECCCCcEEEeccCC
Confidence 34555665544321 34567999999999999999999999999
Q ss_pred CcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccccccccccccc-----------C--
Q 006825 478 CVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSL-----------D-- 544 (630)
Q Consensus 478 gtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~-----------d-- 544 (630)
|.|||||...+-|..++ ..|...|..+.|+..++.+++.+.||+|+.|+..+...-.++.. |
T Consensus 372 gKVKvWn~~SgfC~vTF-----teHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~s 446 (893)
T KOG0291|consen 372 GKVKVWNTQSGFCFVTF-----TEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPS 446 (893)
T ss_pred CcEEEEeccCceEEEEe-----ccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCC
Confidence 99999999999999984 89999999999999999999999999999999877544333221 1
Q ss_pred cccc--------ccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCC-CcEEEEEecCCceEEE
Q 006825 545 HMVV--------PETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSS-KTCLKIFSHSDYDISL 613 (630)
Q Consensus 545 ~~i~--------~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~t-g~~l~t~~H~~~V~sV 613 (630)
+.++ ...+|.+ +|+.+-.|.||.++|.+|+|+|. ..|+|+|+|+||||||+-. ...+.++.+...|+.+
T Consensus 447 GelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~v 526 (893)
T KOG0291|consen 447 GELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAV 526 (893)
T ss_pred CCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEE
Confidence 2221 1279999 99999999999999999999999 9999999999999999865 3567788888899999
Q ss_pred E-cCCCcEEEEecce
Q 006825 614 V-DRLMLRFAYGAFL 627 (630)
Q Consensus 614 a-s~~~~~lAsgs~~ 627 (630)
+ .|++.-+|.+..+
T Consensus 527 sfrPdG~elaVaTld 541 (893)
T KOG0291|consen 527 SFRPDGKELAVATLD 541 (893)
T ss_pred EEcCCCCeEEEEEec
Confidence 9 9999988887543
No 26
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.96 E-value=2.1e-26 Score=227.55 Aligned_cols=271 Identities=18% Similarity=0.188 Sum_probs=225.3
Q ss_pred eecCCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCc--eeEEecCCccCC
Q 006825 308 EIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGG--MKSKKKGSWFKS 382 (630)
Q Consensus 308 e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~--~~~~lk~gH~~~ 382 (630)
..+.|. +.|+|+..||++. .++.-....|..|...| .||.+++ ..|| ++|++++. .+.++. +|.+.
T Consensus 15 sA~YDh-TIRfWqa~tG~C~-----rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvR-lyD~~S~np~Pv~t~e-~h~kN 85 (311)
T KOG0315|consen 15 SAGYDH-TIRFWQALTGICS-----RTIQHPDSQVNRLEITPDKKDLAAAGN-QHVR-LYDLNSNNPNPVATFE-GHTKN 85 (311)
T ss_pred eccCcc-eeeeeehhcCeEE-----EEEecCccceeeEEEcCCcchhhhccC-CeeE-EEEccCCCCCceeEEe-ccCCc
Confidence 334454 4789999999999 77776677899999999 6777666 6899 99999876 477887 99999
Q ss_pred EEEEEEcCCCCeEEeecCCC-----CCc-----cccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeee
Q 006825 383 IRTVASSVTGHKERRSSDER-----DTS-----SEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQ 450 (630)
Q Consensus 383 V~sVAfSpdG~~lasgS~D~-----dt~-----s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~ 450 (630)
|.+|.|.-+|+.+.+|++|. |.. ....|...|+++...+.. |++|..+|.||+||+..... ..+
T Consensus 86 VtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c----~~~ 161 (311)
T KOG0315|consen 86 VTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSC----THE 161 (311)
T ss_pred eEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCcc----ccc
Confidence 99999999999999999998 222 255677888888887766 99999999999999976532 122
Q ss_pred EecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeee-cccccCcccceEEEEECCCCCEEEEeeCCCeeee
Q 006825 451 EIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELL-EKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529 (630)
Q Consensus 451 tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~-~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i 529 (630)
-+..-..+|.++...|||.+|+.+-.-|++.+|++.+.....++. ...+..|...+..+.++||+++|++++.|.++
T Consensus 162 liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv-- 239 (311)
T KOG0315|consen 162 LIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTV-- 239 (311)
T ss_pred cCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceE--
Confidence 234455789999999999999999999999999998766555443 33468899999999999999999999999999
Q ss_pred ecccccccccccccCccccccEEEeCCC--CceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-
Q 006825 530 KRRGRSINRKSLSLDHMVVPETVFALSD--KPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS- 605 (630)
Q Consensus 530 ~~~~~~~~~~s~s~d~~i~~~~Vwdlsg--k~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~- 605 (630)
+||...+ +.-..++||...|.+.+||.| .||+||+.|+++|+|++..++.++.+.
T Consensus 240 ---------------------~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~g 298 (311)
T KOG0315|consen 240 ---------------------KIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQG 298 (311)
T ss_pred ---------------------EEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCC
Confidence 6776644 455678999999999999999 999999999999999999999999998
Q ss_pred cCCceEEEE
Q 006825 606 HSDYDISLV 614 (630)
Q Consensus 606 H~~~V~sVa 614 (630)
|.....|++
T Consensus 299 h~K~~vc~~ 307 (311)
T KOG0315|consen 299 HHKAAVCVA 307 (311)
T ss_pred cccccEEEE
Confidence 666666665
No 27
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.96 E-value=1.3e-27 Score=265.34 Aligned_cols=257 Identities=19% Similarity=0.187 Sum_probs=209.1
Q ss_pred eeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecC-CccCCEEEEEEcCCCCeEEeecCCC---CCc
Q 006825 333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKG-SWFKSIRTVASSVTGHKERRSSDER---DTS 405 (630)
Q Consensus 333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~-gH~~~V~sVAfSpdG~~lasgS~D~---dt~ 405 (630)
-++..--..|.+..|++ .||-|-.|..|+ +|.+..- .+++++. .+...+.. -+.| ...- -.++. ...
T Consensus 372 YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~-~~Sl~p~-kl~~lk~~~~l~~~d~--~sad-~~~~-~~D~~~~~~~~ 445 (707)
T KOG0263|consen 372 YTFHNTYQGVTCAEFSDDSSMLACGFVDSSVR-VWSLTPK-KLKKLKDASDLSNIDT--ESAD-VDVD-MLDDDSSGTSR 445 (707)
T ss_pred EEEEEcCCcceeEeecCCcchhhccccccEEE-EEecchh-hhccccchhhhccccc--cccc-hhhh-hccccCCceeE
Confidence 34444445678888887 789999999999 9987543 3333331 11111100 0000 0000 00111 123
Q ss_pred cccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEE
Q 006825 406 SEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVW 483 (630)
Q Consensus 406 s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVW 483 (630)
.+.||..+|....|+++. |+++++|++||+|.+.+.. ++-.++||..+||.+.|+|-|-|+||||.|+|.++|
T Consensus 446 ~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s-----~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLW 520 (707)
T KOG0263|consen 446 TLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWS-----CLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLW 520 (707)
T ss_pred EeecCCCceeeeeecccccceeeccCCcceeeeecccce-----eEEEecCCCcceeeEEecCCceEEEecCCCceeeee
Confidence 388899999999998887 8999999999999987663 677889999999999999999999999999999999
Q ss_pred ECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEE
Q 006825 484 QVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICS 562 (630)
Q Consensus 484 Dl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~t 562 (630)
........+. +.+|..-|.|+.|+|...|+++|+.|.++ ++|++ +|..++.
T Consensus 521 s~d~~~PlRi-----faghlsDV~cv~FHPNs~Y~aTGSsD~tV-----------------------RlWDv~~G~~VRi 572 (707)
T KOG0263|consen 521 STDHNKPLRI-----FAGHLSDVDCVSFHPNSNYVATGSSDRTV-----------------------RLWDVSTGNSVRI 572 (707)
T ss_pred ecccCCchhh-----hcccccccceEEECCcccccccCCCCceE-----------------------EEEEcCCCcEEEE
Confidence 9988777766 58999999999999999999999999999 89998 8999999
Q ss_pred eccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcEEEEeccee
Q 006825 563 FQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLRFAYGAFLN 628 (630)
Q Consensus 563 L~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~lAsgs~~n 628 (630)
|.||.++|++|+|||+ .+|+||+.|+.|+|||+.+++.+..+. |.+.|.+|. +.++..|++|+.++
T Consensus 573 F~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~Dn 641 (707)
T KOG0263|consen 573 FTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADN 641 (707)
T ss_pred ecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCC
Confidence 9999999999999999 999999999999999999999999998 999999999 99999999998764
No 28
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.95 E-value=2.4e-28 Score=249.78 Aligned_cols=249 Identities=15% Similarity=0.192 Sum_probs=214.7
Q ss_pred eeEEEEcCCCceEeeecceeeecCccceeEEEeec-ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCC
Q 006825 315 WKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ-NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGH 393 (630)
Q Consensus 315 ~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~-~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~ 393 (630)
+..+||..+-.++ ..|.||++.|.+|.|-. .++|||.|.||| +||++||+++.++. +|...|..+.|+. .
T Consensus 218 TikiWD~n~~~c~-----~~L~GHtGSVLCLqyd~rviisGSSDsTvr-vWDv~tge~l~tli-hHceaVLhlrf~n--g 288 (499)
T KOG0281|consen 218 TIKIWDKNSLECL-----KILTGHTGSVLCLQYDERVIVSGSSDSTVR-VWDVNTGEPLNTLI-HHCEAVLHLRFSN--G 288 (499)
T ss_pred ceEEeccccHHHH-----HhhhcCCCcEEeeeccceEEEecCCCceEE-EEeccCCchhhHHh-hhcceeEEEEEeC--C
Confidence 5779999987777 89999999999999987 899999999999 99999999999998 9999999999986 6
Q ss_pred eEEeecCCCC-------Cc-------cccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCE
Q 006825 394 KERRSSDERD-------TS-------SEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSI 459 (630)
Q Consensus 394 ~lasgS~D~d-------t~-------s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V 459 (630)
++++.|.|+. .. -+.||...|..++|....+++++.|.+|++|++.+.+ ++++|.||...|
T Consensus 289 ~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~e-----fvRtl~gHkRGI 363 (499)
T KOG0281|consen 289 YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCE-----FVRTLNGHKRGI 363 (499)
T ss_pred EEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEEEecCCceEEEEecccee-----eehhhhcccccc
Confidence 8999999981 11 1899999999999999999999999999999998886 589999999999
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccccccccc
Q 006825 460 WSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRK 539 (630)
Q Consensus 460 ~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~ 539 (630)
.|+.+ .|++++|||.|.+||+||+..|.+++.| .||..-|.++.| +.+.|++|+.||+|++|+........
T Consensus 364 AClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvL-----eGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpr 434 (499)
T KOG0281|consen 364 ACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVL-----EGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPR 434 (499)
T ss_pred eehhc--cCeEEEecCCCceEEEEeccccHHHHHH-----hchHHhhhheee--cCceeeeccccceEEEEecccccCCc
Confidence 99998 7999999999999999999999999885 999999999999 56789999999999555443211100
Q ss_pred ccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcE
Q 006825 540 SLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTC 600 (630)
Q Consensus 540 s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~ 600 (630)
..+ ..-++.++..|++.|..+.|.. -.+++++.|.+|.|||...+..
T Consensus 435 a~~-------------~~~Cl~~lv~hsgRVFrLQFD~-fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 435 APA-------------STLCLRTLVEHSGRVFRLQFDE-FQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred ccc-------------cchHHHhhhhccceeEEEeecc-eEEEeccCCCeEEEEEcCCCCc
Confidence 000 1125677888999999999954 7889999999999999987643
No 29
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.3e-27 Score=258.58 Aligned_cols=259 Identities=14% Similarity=0.097 Sum_probs=229.9
Q ss_pred eeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-------
Q 006825 333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER------- 402 (630)
Q Consensus 333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~------- 402 (630)
.++..|++.|+++-|+| .+.++=..+.+. ||+-.|....+.+. --.-+|++..|-+.-+++++||+|.
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~-IWnyetqtmVksfe-V~~~PvRa~kfiaRknWiv~GsDD~~IrVfny 84 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQ-IWNYETQTMVKSFE-VSEVPVRAAKFIARKNWIVTGSDDMQIRVFNY 84 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeE-EEecccceeeeeee-ecccchhhheeeeccceEEEecCCceEEEEec
Confidence 34566999999999999 566667779999 99999999998887 6778999999999999999999997
Q ss_pred C----CccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc-CCCEEEEEe
Q 006825 403 D----TSSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASAG 475 (630)
Q Consensus 403 d----t~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp-DG~~LASgS 475 (630)
. ...+..|..-+.+++..|.. ++++++|-+|++|++..+ ..|.|+|.||+..|.+|+|+| |.+.+||++
T Consensus 85 nt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~----wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~s 160 (794)
T KOG0276|consen 85 NTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE----WACEQTFEGHEHYVMQVAFNPKDPNTFASAS 160 (794)
T ss_pred ccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCc----eeeeeEEcCcceEEEEEEecCCCccceeeee
Confidence 2 23388899999999988876 899999999999999754 458899999999999999999 888999999
Q ss_pred CCCcEEEEECcCCceeeeeecccccCcccceEEEEECCC--CCEEEEeeCCCeeeeecccccccccccccCccccccEEE
Q 006825 476 EDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE--PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVF 553 (630)
Q Consensus 476 ~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpd--g~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vw 553 (630)
.|+|||||.+....+..+| .+|...|.++.+-+- -.++++|++|.+| +||
T Consensus 161 LDrTVKVWslgs~~~nfTl-----~gHekGVN~Vdyy~~gdkpylIsgaDD~ti-----------------------KvW 212 (794)
T KOG0276|consen 161 LDRTVKVWSLGSPHPNFTL-----EGHEKGVNCVDYYTGGDKPYLISGADDLTI-----------------------KVW 212 (794)
T ss_pred ccccEEEEEcCCCCCceee-----eccccCcceEEeccCCCcceEEecCCCceE-----------------------EEe
Confidence 9999999999888888875 899999999999765 4799999999999 889
Q ss_pred eC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcEEEEec
Q 006825 554 AL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLRFAYGA 625 (630)
Q Consensus 554 dl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~lAsgs 625 (630)
|. +..|+++|+||+..|..+.|+|. .+++|||.|||||||+..|-++..++. ....||||+ ......++.|.
T Consensus 213 DyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~ 288 (794)
T KOG0276|consen 213 DYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGF 288 (794)
T ss_pred ecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEec
Confidence 98 67899999999999999999999 999999999999999999999988888 889999999 55555566663
No 30
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=3.1e-27 Score=244.35 Aligned_cols=262 Identities=19% Similarity=0.170 Sum_probs=217.2
Q ss_pred eeeecCccceeEEEeec-ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCC---eEEeecCCC------
Q 006825 333 EMCVGHSPIVQELMRRQ-NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGH---KERRSSDER------ 402 (630)
Q Consensus 333 ~~l~GHs~~V~~Lafs~-~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~---~lasgS~D~------ 402 (630)
+...-|-+.|.++--.+ .+.||++|+++| +||. .|+...+.. ||.++|++|++.-... .+++++.|+
T Consensus 99 l~~~~hdDWVSsv~~~~~~IltgsYDg~~r-iWd~-~Gk~~~~~~-Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~ 175 (423)
T KOG0313|consen 99 LQCFLHDDWVSSVKGASKWILTGSYDGTSR-IWDL-KGKSIKTIV-GHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWK 175 (423)
T ss_pred cccccchhhhhhhcccCceEEEeecCCeeE-EEec-CCceEEEEe-cCCcceeeeEEEecCCccceEEEecCCceEEEEE
Confidence 34556888888877767 899999999999 9997 689999998 9999999888875333 499999997
Q ss_pred -C--------CccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcc--------------------cceeeeeE
Q 006825 403 -D--------TSSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDL--------------------TALYKCQE 451 (630)
Q Consensus 403 -d--------t~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el--------------------~~~~~v~t 451 (630)
+ ...-+||.+.|-++....++ +++|+.|.+|.+|+....+. ..-..+-+
T Consensus 176 ~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vt 255 (423)
T KOG0313|consen 176 WNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVT 255 (423)
T ss_pred ecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEE
Confidence 1 11145999999999988887 89999999999999332110 11124568
Q ss_pred ecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeec
Q 006825 452 IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKR 531 (630)
Q Consensus 452 L~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~ 531 (630)
|.||+++|.+|.|++ ...+.|+|.|.|||+||+.++..+..+. ....++++.++|...+|++|+.|.+|
T Consensus 256 l~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~------~~ksl~~i~~~~~~~Ll~~gssdr~i---- 324 (423)
T KOG0313|consen 256 LEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLT------TNKSLNCISYSPLSKLLASGSSDRHI---- 324 (423)
T ss_pred ecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeee------cCcceeEeecccccceeeecCCCCce----
Confidence 899999999999998 6789999999999999999999887752 23578899999999999999999999
Q ss_pred ccccccccccccCccccccEEEeC---CC-CceEEeccCCCCEEEEEEcCC--CeEEEEECCCcEEEEeCCCCc-EEEEE
Q 006825 532 RGRSINRKSLSLDHMVVPETVFAL---SD-KPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKT-CLKIF 604 (630)
Q Consensus 532 ~~~~~~~~s~s~d~~i~~~~Vwdl---sg-k~l~tL~GHs~~V~sLafSPd--~~LaSgS~DgtVrIWDl~tg~-~l~t~ 604 (630)
++||. .+ ...++|.||.+.|.++.|+|. .+|+|||.|+++++||+++-. +++.+
T Consensus 325 -------------------rl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI 385 (423)
T KOG0313|consen 325 -------------------RLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDI 385 (423)
T ss_pred -------------------eecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceee
Confidence 55655 22 345689999999999999997 889999999999999999877 99999
Q ss_pred e-cCCceEEEEcCCCcEEEEecce
Q 006825 605 S-HSDYDISLVDRLMLRFAYGAFL 627 (630)
Q Consensus 605 ~-H~~~V~sVas~~~~~lAsgs~~ 627 (630)
. |.+.|.++.-..+..+++|+.+
T Consensus 386 ~~h~DKvl~vdW~~~~~IvSGGaD 409 (423)
T KOG0313|consen 386 AGHNDKVLSVDWNEGGLIVSGGAD 409 (423)
T ss_pred ccCCceEEEEeccCCceEEeccCc
Confidence 8 9999999995567777788765
No 31
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.95 E-value=2.5e-26 Score=236.68 Aligned_cols=283 Identities=14% Similarity=0.114 Sum_probs=224.5
Q ss_pred ceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCcc--
Q 006825 332 FEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSS-- 406 (630)
Q Consensus 332 f~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s-- 406 (630)
..+|.+|+..|-+++..| .+|||+.|.... +|+..+|.....+. ||+.+|.++.||.||.+||||..+.....
T Consensus 57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~Af-lW~~~~ge~~~elt-gHKDSVt~~~FshdgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAF-LWDISTGEFAGELT-GHKDSVTCCSFSHDGTLLATGDMSGKVLVFK 134 (399)
T ss_pred eeehhhcCCceEEEEeCCCCceEEecCCCceEE-EEEccCCcceeEec-CCCCceEEEEEccCceEEEecCCCccEEEEE
Confidence 478999999999999998 799999999999 99999999999999 99999999999999999999988762211
Q ss_pred ---------ccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEe
Q 006825 407 ---------EKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG 475 (630)
Q Consensus 407 ---------~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS 475 (630)
+......+..+...+.. ++.|+.||.|++|.+..+. ..+.+.||..++++=.|.|||+.++++.
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~-----~~kv~~Gh~~~ct~G~f~pdGKr~~tgy 209 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA-----LCKVMSGHNSPCTCGEFIPDGKRILTGY 209 (399)
T ss_pred cccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcc-----eeeEecCCCCCcccccccCCCceEEEEe
Confidence 22233445556667765 8999999999999987642 4688999999999999999999999999
Q ss_pred CCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccc-----------------
Q 006825 476 EDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINR----------------- 538 (630)
Q Consensus 476 ~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~----------------- 538 (630)
.|++|++||..+++++..+. ........++.++..+..++.|..++.+.+-.....+-.
T Consensus 210 ~dgti~~Wn~ktg~p~~~~~----~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~ 285 (399)
T KOG0296|consen 210 DDGTIIVWNPKTGQPLHKIT----QAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEEL 285 (399)
T ss_pred cCceEEEEecCCCceeEEec----ccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhh
Confidence 99999999999998877752 111223445555555666666655554433221110000
Q ss_pred ----------------cccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEE
Q 006825 539 ----------------KSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLK 602 (630)
Q Consensus 539 ----------------~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~l~ 602 (630)
...+.++.+ .||++....++....|...|..+.|-++.+|++++.||.|++||.++|+++.
T Consensus 286 ~esve~~~~ss~lpL~A~G~vdG~i---~iyD~a~~~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~ 362 (399)
T KOG0296|consen 286 DESVESIPSSSKLPLAACGSVDGTI---AIYDLAASTLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKF 362 (399)
T ss_pred hhhhhhcccccccchhhcccccceE---EEEecccchhheeccCCCceEEEEEcCcchheeeccCceEEeeeccccceEE
Confidence 011223333 7899966666677779999999999998999999999999999999999999
Q ss_pred EEe-cCCceEEEE-cCCCcEEEEeccee
Q 006825 603 IFS-HSDYDISLV-DRLMLRFAYGAFLN 628 (630)
Q Consensus 603 t~~-H~~~V~sVa-s~~~~~lAsgs~~n 628 (630)
++. |...|.+++ .++...+.+.+.++
T Consensus 363 ~y~GH~~~Il~f~ls~~~~~vvT~s~D~ 390 (399)
T KOG0296|consen 363 TYTGHQMGILDFALSPQKRLVVTVSDDN 390 (399)
T ss_pred EEecCchheeEEEEcCCCcEEEEecCCC
Confidence 999 999999999 88888888887665
No 32
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=4.5e-27 Score=261.71 Aligned_cols=265 Identities=16% Similarity=0.169 Sum_probs=228.0
Q ss_pred eeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC--------
Q 006825 334 MCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-------- 402 (630)
Q Consensus 334 ~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-------- 402 (630)
.+..-+..|+.|+|+| .+.++=--+.|+ +||-.=|.++.++. .|.++|+.|+|+|.+.++++|++|.
T Consensus 4 kfEskSsRvKglsFHP~rPwILtslHsG~IQ-lWDYRM~tli~rFd-eHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk 81 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQ-LWDYRMGTLIDRFD-EHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK 81 (1202)
T ss_pred hhhcccccccceecCCCCCEEEEeecCceee-eehhhhhhHHhhhh-ccCCccceeeecCCCCeEEecCCccEEEEEecc
Confidence 4455678899999998 677777778999 99999999999998 9999999999999999999999997
Q ss_pred ---CCccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCC
Q 006825 403 ---DTSSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED 477 (630)
Q Consensus 403 ---dt~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~D 477 (630)
-+-.+.||-.-|..+.|.... ++++++|-+||||++.++. ++..|.||...|.|..|+|...+++|||.|
T Consensus 82 ~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~-----~iavltGHnHYVMcAqFhptEDlIVSaSLD 156 (1202)
T KOG0292|consen 82 TRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRK-----CIAVLTGHNHYVMCAQFHPTEDLIVSASLD 156 (1202)
T ss_pred cceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCc-----eEEEEecCceEEEeeccCCccceEEEeccc
Confidence 123499999999999999988 9999999999999998885 789999999999999999999999999999
Q ss_pred CcEEEEECcCCcee------------------------eeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccc
Q 006825 478 CVIHVWQVVESERK------------------------GELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRG 533 (630)
Q Consensus 478 gtIrVWDl~tg~~~------------------------~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~ 533 (630)
.||||||+..-... -.+....+.||...|..++|+|.-.+|++|++|..|++|...
T Consensus 157 QTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmn 236 (1202)
T KOG0292|consen 157 QTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMN 236 (1202)
T ss_pred ceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEec
Confidence 99999998421100 001123358999999999999999999999999999555433
Q ss_pred ccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceE
Q 006825 534 RSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDI 611 (630)
Q Consensus 534 ~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~ 611 (630)
.. +.|. +-+..||.+.|.++-|+|. .+++|.|.|++|||||+...+++++|. ..+.-|
T Consensus 237 et---------------KaWE-----vDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW 296 (1202)
T KOG0292|consen 237 ET---------------KAWE-----VDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFW 296 (1202)
T ss_pred cc---------------ccee-----ehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEE
Confidence 21 3333 4467899999999999998 999999999999999999999999998 778889
Q ss_pred EEE-cCCCcEEEEec
Q 006825 612 SLV-DRLMLRFAYGA 625 (630)
Q Consensus 612 sVa-s~~~~~lAsgs 625 (630)
+|+ +|.+..+|.|.
T Consensus 297 ~laahP~lNLfAAgH 311 (1202)
T KOG0292|consen 297 ILAAHPELNLFAAGH 311 (1202)
T ss_pred EEEecCCcceeeeec
Confidence 999 99999998874
No 33
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.95 E-value=9.8e-28 Score=245.28 Aligned_cols=248 Identities=15% Similarity=0.171 Sum_probs=215.3
Q ss_pred CccceeEEEeec-ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-------CCc----
Q 006825 338 HSPIVQELMRRQ-NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-------DTS---- 405 (630)
Q Consensus 338 Hs~~V~~Lafs~-~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-------dt~---- 405 (630)
-+..|.+|.+-. .++||..|+||+ +||.++-.+++++. ||+++|.|+.|-. +.+++||.|. +++
T Consensus 196 ~skgVYClQYDD~kiVSGlrDnTik-iWD~n~~~c~~~L~-GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~l~ 271 (499)
T KOG0281|consen 196 NSKGVYCLQYDDEKIVSGLRDNTIK-IWDKNSLECLKILT-GHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPLN 271 (499)
T ss_pred cCCceEEEEecchhhhcccccCceE-EeccccHHHHHhhh-cCCCcEEeeeccc--eEEEecCCCceEEEEeccCCchhh
Confidence 456788888876 899999999999 99999999999999 9999998888754 6999999886 222
Q ss_pred cccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEEC
Q 006825 406 SEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQV 485 (630)
Q Consensus 406 s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl 485 (630)
.+-+|...|..+.|+...+++.+.|.+|++||+.... ...+.+.|.||..+|+.+.| |.+|++|+|.|+|||+|++
T Consensus 272 tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps--~it~rrVLvGHrAaVNvVdf--d~kyIVsASgDRTikvW~~ 347 (499)
T KOG0281|consen 272 TLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPT--DITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWST 347 (499)
T ss_pred HHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCch--HHHHHHHHhhhhhheeeecc--ccceEEEecCCceEEEEec
Confidence 3778999999999999999999999999999997653 34456789999999999999 6679999999999999999
Q ss_pred cCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEec
Q 006825 486 VESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQ 564 (630)
Q Consensus 486 ~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~ 564 (630)
.+++.++++ .+|...|.++.+ .++++++|+.|.+| ++|++ .|++++.|+
T Consensus 348 st~efvRtl-----~gHkRGIAClQY--r~rlvVSGSSDntI-----------------------Rlwdi~~G~cLRvLe 397 (499)
T KOG0281|consen 348 STCEFVRTL-----NGHKRGIACLQY--RDRLVVSGSSDNTI-----------------------RLWDIECGACLRVLE 397 (499)
T ss_pred cceeeehhh-----hcccccceehhc--cCeEEEecCCCceE-----------------------EEEeccccHHHHHHh
Confidence 999999985 899999998887 58999999999999 89998 899999999
Q ss_pred cCCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCc---------EEEEEe-cCCceEEEEcCCCcEEEEe
Q 006825 565 GHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKT---------CLKIFS-HSDYDISLVDRLMLRFAYG 624 (630)
Q Consensus 565 GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~---------~l~t~~-H~~~V~sVas~~~~~lAsg 624 (630)
||..-|.++.|.. +.++||+.||+|||||+.++. |+.++. |++.|.-+.......+++.
T Consensus 398 GHEeLvRciRFd~-krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvsss 466 (499)
T KOG0281|consen 398 GHEELVRCIRFDN-KRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSS 466 (499)
T ss_pred chHHhhhheeecC-ceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecceEEEecc
Confidence 9999999999954 899999999999999998753 566665 9999988884444444443
No 34
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.95 E-value=3.7e-25 Score=218.16 Aligned_cols=227 Identities=23% Similarity=0.321 Sum_probs=196.2
Q ss_pred eeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-----CC
Q 006825 333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-----DT 404 (630)
Q Consensus 333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-----dt 404 (630)
..+.+|...+..+.|.| .+++++.|+.++ +|+..+++.+..+. +|...|.+++|+++++++++++.+. +.
T Consensus 45 ~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~-i~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~ 122 (289)
T cd00200 45 RTLKGHTGPVRDVAASADGTYLASGSSDKTIR-LWDLETGECVRTLT-GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDV 122 (289)
T ss_pred EEEecCCcceeEEEECCCCCEEEEEcCCCeEE-EEEcCcccceEEEe-ccCCcEEEEEEcCCCCEEEEecCCCeEEEEEC
Confidence 45667888888999988 699999999999 99999998888888 8999999999999999999888554 11
Q ss_pred ------ccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeC
Q 006825 405 ------SSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE 476 (630)
Q Consensus 405 ------~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~ 476 (630)
.....|...+.++.+.++. ++++..++.|++|+....+ .+..+..|...|.+++|+|+++.|++++.
T Consensus 123 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 197 (289)
T cd00200 123 ETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK-----CVATLTGHTGEVNSVAFSPDGEKLLSSSS 197 (289)
T ss_pred CCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccc-----cceeEecCccccceEEECCCcCEEEEecC
Confidence 1255688889999999865 6666679999999997554 35667899999999999999999999999
Q ss_pred CCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-
Q 006825 477 DCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL- 555 (630)
Q Consensus 477 DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl- 555 (630)
|+.|++||+.+++....+ ..|...+..+.|+|++.++++++.++.+ .+|++
T Consensus 198 ~~~i~i~d~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~~~~~~~~~~i-----------------------~i~~~~ 249 (289)
T cd00200 198 DGTIKLWDLSTGKCLGTL-----RGHENGVNSVAFSPDGYLLASGSEDGTI-----------------------RVWDLR 249 (289)
T ss_pred CCcEEEEECCCCceecch-----hhcCCceEEEEEcCCCcEEEEEcCCCcE-----------------------EEEEcC
Confidence 999999999987776663 5778899999999999999888879998 78887
Q ss_pred CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEe
Q 006825 556 SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWH 594 (630)
Q Consensus 556 sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWD 594 (630)
+++++..+.+|...|.+++|+|+ .+|++++.|+.|++|+
T Consensus 250 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 250 TGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 57888889999999999999999 9999999999999996
No 35
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3.1e-26 Score=238.65 Aligned_cols=263 Identities=19% Similarity=0.210 Sum_probs=213.1
Q ss_pred eeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCcc
Q 006825 261 MSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSP 340 (630)
Q Consensus 261 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~ 340 (630)
+.|||||+|| |++..+.+-.||....-.+| +-..+|+||..
T Consensus 230 l~FS~nGkyL--------------AsaSkD~Taiiw~v~~d~~~-------------------------kl~~tlvgh~~ 270 (519)
T KOG0293|consen 230 LQFSHNGKYL--------------ASASKDSTAIIWIVVYDVHF-------------------------KLKKTLVGHSQ 270 (519)
T ss_pred EEEcCCCeeE--------------eeccCCceEEEEEEecCcce-------------------------eeeeeeecccC
Confidence 6899999999 55556667777765322111 11378999999
Q ss_pred ceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCC-----C-----ccc
Q 006825 341 IVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERD-----T-----SSE 407 (630)
Q Consensus 341 ~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~d-----t-----~s~ 407 (630)
.|.-++|+| +|++.+.|..++ +||+.||...+....+|.-.+.++||-|||..+++|+-|+. . ..-
T Consensus 271 ~V~yi~wSPDdryLlaCg~~e~~~-lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W 349 (519)
T KOG0293|consen 271 PVSYIMWSPDDRYLLACGFDEVLS-LWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNW 349 (519)
T ss_pred ceEEEEECCCCCeEEecCchHhee-eccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcc
Confidence 999999999 899999999999 99999999999998888899999999999999999999871 1 112
Q ss_pred cCC-cceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 006825 408 KGG-RRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQ 484 (630)
Q Consensus 408 ~gh-~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWD 484 (630)
+|- .-.|..++.+.|+ ++....|.+|++|+..+..- .-+..-..+|+++.+|.||+++.+--.+..|++||
T Consensus 350 ~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~d------r~lise~~~its~~iS~d~k~~LvnL~~qei~LWD 423 (519)
T KOG0293|consen 350 EGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVD------RGLISEEQPITSFSISKDGKLALVNLQDQEIHLWD 423 (519)
T ss_pred cccccceeEEEEEcCCCcEEEEEecccceeeechhhhhh------hccccccCceeEEEEcCCCcEEEEEcccCeeEEee
Confidence 221 1357888888888 77778999999999866532 11334557899999999999999999999999999
Q ss_pred CcCCceeeeeecccccCcccceEEE--EEC-CCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCce
Q 006825 485 VVESERKGELLEKQEDGHLNMLLLA--NGS-PEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPI 560 (630)
Q Consensus 485 l~tg~~~~~l~~~~~~gh~~~V~sv--afS-pdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l 560 (630)
++....++. +.||...-+.+ +|- .+..++++|+.|+.| +||+. +|+++
T Consensus 424 l~e~~lv~k-----Y~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kv-----------------------yIWhr~sgkll 475 (519)
T KOG0293|consen 424 LEENKLVRK-----YFGHKQGHFIIRSCFGGGNDKFIASGSEDSKV-----------------------YIWHRISGKLL 475 (519)
T ss_pred cchhhHHHH-----hhcccccceEEEeccCCCCcceEEecCCCceE-----------------------EEEEccCCcee
Confidence 997766666 47777654433 333 345899999999999 88887 89999
Q ss_pred EEeccCCCCEEEEEEcCC--CeEEEEECCCcEEEEeCCC
Q 006825 561 CSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSS 597 (630)
Q Consensus 561 ~tL~GHs~~V~sLafSPd--~~LaSgS~DgtVrIWDl~t 597 (630)
.+|.||...|++|+|+|. .++||||.|||||||-...
T Consensus 476 ~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 476 AVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred EeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 999999999999999996 8999999999999997653
No 36
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.94 E-value=3.4e-26 Score=226.01 Aligned_cols=249 Identities=18% Similarity=0.185 Sum_probs=209.3
Q ss_pred eecCCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEE
Q 006825 308 EIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIR 384 (630)
Q Consensus 308 e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~ 384 (630)
....||. -|||.-.||.++ .++.||.+.|+...... ..|+++.|-|.+ +||.-||..++.+. |..-|+
T Consensus 34 sa~kd~~-pmlr~g~tgdwi-----gtfeghkgavw~~~l~~na~~aasaaadftak-vw~a~tgdelhsf~--hkhivk 104 (334)
T KOG0278|consen 34 SASKDGK-PMLRNGDTGDWI-----GTFEGHKGAVWSATLNKNATRAASAAADFTAK-VWDAVTGDELHSFE--HKHIVK 104 (334)
T ss_pred EeccCCC-chhccCCCCCcE-----EeeeccCcceeeeecCchhhhhhhhcccchhh-hhhhhhhhhhhhhh--hhheee
Confidence 3344554 568888999999 99999999999987765 689999999999 99999999999986 788899
Q ss_pred EEEEcCCCCeEEeecCCC-----C-------CccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeee
Q 006825 385 TVASSVTGHKERRSSDER-----D-------TSSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQ 450 (630)
Q Consensus 385 sVAfSpdG~~lasgS~D~-----d-------t~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~ 450 (630)
+|||+.|.++|.+|+.++ + .....+|.+.|..+-|...- +++...|++||+||..++. .++
T Consensus 105 ~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt-----~v~ 179 (334)
T KOG0278|consen 105 AVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGT-----EVQ 179 (334)
T ss_pred eEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCc-----EEE
Confidence 999999999999999998 1 12267888888887776543 7888999999999998875 355
Q ss_pred EecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeee
Q 006825 451 EIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKK 530 (630)
Q Consensus 451 tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~ 530 (630)
+|. -..+|+++.+++||++|.++ .-+.|+.||..+...++. ......|.+..++|+..++++|+.|..+
T Consensus 180 sL~-~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs------~k~P~nV~SASL~P~k~~fVaGged~~~--- 248 (334)
T KOG0278|consen 180 SLE-FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKS------YKMPCNVESASLHPKKEFFVAGGEDFKV--- 248 (334)
T ss_pred EEe-cCCCCcceeeccCCCEEEEe-cCceeEEeccccccceee------ccCccccccccccCCCceEEecCcceEE---
Confidence 654 45689999999999977664 457899999988877665 3344678899999999999999999988
Q ss_pred cccccccccccccCccccccEEEeC-CCCceEEe-ccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEE
Q 006825 531 RRGRSINRKSLSLDHMVVPETVFAL-SDKPICSF-QGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCL 601 (630)
Q Consensus 531 ~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL-~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l 601 (630)
..||. +|+.+..+ +||-++|.||.|+|+ ...++||.||+||||.+..++..
T Consensus 249 --------------------~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 249 --------------------YKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred --------------------EEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 67777 78888876 999999999999999 88999999999999998776543
No 37
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.94 E-value=2.2e-25 Score=225.12 Aligned_cols=231 Identities=21% Similarity=0.255 Sum_probs=193.8
Q ss_pred ceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCC-eEEeecCCC-----
Q 006825 332 FEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGH-KERRSSDER----- 402 (630)
Q Consensus 332 f~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~-~lasgS~D~----- 402 (630)
|-++.||+++|..|-|.. .++|.+.|++++ .||+++|++.++++ +|.+-|++++-+.-|. ++.++++|+
T Consensus 83 ~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~-~wD~~tG~~~rk~k-~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~ 160 (338)
T KOG0265|consen 83 FWVLKGHSGAVMELHGMRDGSHILSCGTDKTVR-GWDAETGKRIRKHK-GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLW 160 (338)
T ss_pred eeeeccccceeEeeeeccCCCEEEEecCCceEE-EEecccceeeehhc-cccceeeecCccccCCeEEEecCCCceEEEE
Confidence 456779999999999988 799999999999 99999999999999 9999999999666665 566778887
Q ss_pred CCc-----cccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEe
Q 006825 403 DTS-----SEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG 475 (630)
Q Consensus 403 dt~-----s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS 475 (630)
|.. +....+..++++.|.+.. +++|+-|..|++||+...+ ..+++.||.++|+.|..+|+|.+|.|-+
T Consensus 161 D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d-----~~~~lsGh~DtIt~lsls~~gs~llsns 235 (338)
T KOG0265|consen 161 DIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKND-----GLYTLSGHADTITGLSLSRYGSFLLSNS 235 (338)
T ss_pred eecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCc-----ceEEeecccCceeeEEeccCCCcccccc
Confidence 222 133446678888888777 9999999999999987665 4788999999999999999999999999
Q ss_pred CCCcEEEEECcCCceeeeeecccccCcc----cceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccE
Q 006825 476 EDCVIHVWQVVESERKGELLEKQEDGHL----NMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPET 551 (630)
Q Consensus 476 ~DgtIrVWDl~tg~~~~~l~~~~~~gh~----~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~ 551 (630)
.|.+|++||++........+ ..+.+|. .....++|+|+++.+..++.|..+ .
T Consensus 236 Md~tvrvwd~rp~~p~~R~v-~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~v-----------------------y 291 (338)
T KOG0265|consen 236 MDNTVRVWDVRPFAPSQRCV-KIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFV-----------------------Y 291 (338)
T ss_pred ccceEEEEEecccCCCCceE-EEeecchhhhhhhcceeeccCCCCccccccccceE-----------------------E
Confidence 99999999997543222211 1134443 345688999999999999999999 8
Q ss_pred EEeCCC-CceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEE
Q 006825 552 VFALSD-KPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLW 593 (630)
Q Consensus 552 Vwdlsg-k~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIW 593 (630)
+|+.+. ..+..|.||.+.|++++|+|. .+|++++.|++|.+=
T Consensus 292 vwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 292 VWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLG 335 (338)
T ss_pred EeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEee
Confidence 999854 788999999999999999999 999999999999873
No 38
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=2.9e-25 Score=248.92 Aligned_cols=233 Identities=21% Similarity=0.255 Sum_probs=203.7
Q ss_pred eEEEEcCCCceEeeeccee-eecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCC
Q 006825 316 KKVKEVGTGRQLTIEEFEM-CVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVT 391 (630)
Q Consensus 316 ~~l~dv~TG~~lt~eef~~-l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpd 391 (630)
.++|+..+|..+ .. |.||.+.|+.++|.. .|++||.|+|+| +||..+|++.+.+. ||...|+++..-+
T Consensus 230 l~~~~~~~~~~i-----~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~r-vWd~~sg~C~~~l~-gh~stv~~~~~~~- 301 (537)
T KOG0274|consen 230 LHLWDLNNGYLI-----LTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTER-VWDCSTGECTHSLQ-GHTSSVRCLTIDP- 301 (537)
T ss_pred eEEeecccceEE-----EeeccCCCCCceeEEEecCCCEEEEEecCCcEE-eEecCCCcEEEEec-CCCceEEEEEccC-
Confidence 479999999998 66 999999999999984 899999999999 99999999999999 9999998776543
Q ss_pred CCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEE
Q 006825 392 GHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYL 471 (630)
Q Consensus 392 G~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~L 471 (630)
..+++|+.|.+|++|++.++. +++++.||+++|++|.++ +.+|
T Consensus 302 ------------------------------~~~~sgs~D~tVkVW~v~n~~-----~l~l~~~h~~~V~~v~~~--~~~l 344 (537)
T KOG0274|consen 302 ------------------------------FLLVSGSRDNTVKVWDVTNGA-----CLNLLRGHTGPVNCVQLD--EPLL 344 (537)
T ss_pred ------------------------------ceEeeccCCceEEEEeccCcc-----eEEEeccccccEEEEEec--CCEE
Confidence 234668889999999998664 688899999999999996 8899
Q ss_pred EEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccE
Q 006825 472 ASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPET 551 (630)
Q Consensus 472 ASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~ 551 (630)
++|+.|++|+||++.+++++..+ .+|...|.++.+.+. ..+++|+.|++| +
T Consensus 345 vsgs~d~~v~VW~~~~~~cl~sl-----~gH~~~V~sl~~~~~-~~~~Sgs~D~~I-----------------------k 395 (537)
T KOG0274|consen 345 VSGSYDGTVKVWDPRTGKCLKSL-----SGHTGRVYSLIVDSE-NRLLSGSLDTTI-----------------------K 395 (537)
T ss_pred EEEecCceEEEEEhhhceeeeee-----cCCcceEEEEEecCc-ceEEeeeeccce-----------------------E
Confidence 99999999999999999999985 899999999988766 889999999999 8
Q ss_pred EEeC-CC-CceEEeccCCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEe--cCCceEEEEcCCCcEEEE
Q 006825 552 VFAL-SD-KPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYDISLVDRLMLRFAY 623 (630)
Q Consensus 552 Vwdl-sg-k~l~tL~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~l~t~~--H~~~V~sVas~~~~~lAs 623 (630)
+|++ +. +++.+|.+|..-|..+.+.. ++|++++.|++|++||..+++|++++. |...|++++......+++
T Consensus 396 vWdl~~~~~c~~tl~~h~~~v~~l~~~~-~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~~~~il~s 470 (537)
T KOG0274|consen 396 VWDLRTKRKCIHTLQGHTSLVSSLLLRD-NFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALGKEEILCS 470 (537)
T ss_pred eecCCchhhhhhhhcCCccccccccccc-ceeEeccccccEEEeecccCceeeeeccCCcccEEEeecCcceEEEE
Confidence 8888 44 69999999999998877644 899999999999999999999999998 568899888433333333
No 39
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.94 E-value=1.6e-24 Score=255.49 Aligned_cols=260 Identities=13% Similarity=0.168 Sum_probs=201.0
Q ss_pred ceeecCCCCcccCCCccccccCCCCCcccccccEEEEECCC------------------------------CcEEEEeee
Q 006825 260 SMSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDN------------------------------GKEFVVNEI 309 (630)
Q Consensus 260 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Ldd------------------------------G~~~~v~e~ 309 (630)
++.++|||+++ +++..++.++||++.. +..++. .
T Consensus 488 ~i~fs~dg~~l--------------atgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las--~ 551 (793)
T PLN00181 488 AIGFDRDGEFF--------------ATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVAS--S 551 (793)
T ss_pred EEEECCCCCEE--------------EEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEE--E
Confidence 57899999999 4555666777777532 222222 2
Q ss_pred cCCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec----ceEeecCCCccEecccCCCCceeEEecCCccCCEEE
Q 006825 310 QEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRT 385 (630)
Q Consensus 310 ~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~s 385 (630)
+.||. .++||+.+++.+ ..+.+|...|++|+|+| .|++|+.|++++ +||+.++..+.++. .| ..|.+
T Consensus 552 ~~Dg~-v~lWd~~~~~~~-----~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~-iWd~~~~~~~~~~~-~~-~~v~~ 622 (793)
T PLN00181 552 NFEGV-VQVWDVARSQLV-----TEMKEHEKRVWSIDYSSADPTLLASGSDDGSVK-LWSINQGVSIGTIK-TK-ANICC 622 (793)
T ss_pred eCCCe-EEEEECCCCeEE-----EEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEE-EEECCCCcEEEEEe-cC-CCeEE
Confidence 23554 679999999887 78899999999999986 699999999999 99999999998887 44 67889
Q ss_pred EEEcC-CCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEE
Q 006825 386 VASSV-TGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKF 464 (630)
Q Consensus 386 VAfSp-dG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaF 464 (630)
++|++ +|+++ ++|+.|+.|++||+..... .+..+.+|...|.+++|
T Consensus 623 v~~~~~~g~~l-----------------------------atgs~dg~I~iwD~~~~~~----~~~~~~~h~~~V~~v~f 669 (793)
T PLN00181 623 VQFPSESGRSL-----------------------------AFGSADHKVYYYDLRNPKL----PLCTMIGHSKTVSYVRF 669 (793)
T ss_pred EEEeCCCCCEE-----------------------------EEEeCCCeEEEEECCCCCc----cceEecCCCCCEEEEEE
Confidence 99954 56555 5667788999999875432 34678899999999999
Q ss_pred ccCCCEEEEEeCCCcEEEEECcCC------ceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccc
Q 006825 465 SLDGRYLASAGEDCVIHVWQVVES------ERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINR 538 (630)
Q Consensus 465 SpDG~~LASgS~DgtIrVWDl~tg------~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~ 538 (630)
. ++.+|+|++.|++|+|||+..+ ..+.. +.+|...+..++|+|++.+|++|+.|+.|.+|+.......
T Consensus 670 ~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~-----~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~ 743 (793)
T PLN00181 670 V-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHS-----FMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPV 743 (793)
T ss_pred e-CCCEEEEEECCCEEEEEeCCCCccccCCcceEE-----EcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCce
Confidence 7 7889999999999999999753 23333 4789999999999999999999999999988875432211
Q ss_pred cccccCccccccEEEeC-CCCce--EEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeC
Q 006825 539 KSLSLDHMVVPETVFAL-SDKPI--CSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHL 595 (630)
Q Consensus 539 ~s~s~d~~i~~~~Vwdl-sgk~l--~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl 595 (630)
. .|.. ....+ ..+..|...|.+++|+|+ .+|++|+.||+|+||++
T Consensus 744 ~------------s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 744 L------------SYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred E------------EEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 1 1111 00111 123457778999999999 89999999999999997
No 40
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.94 E-value=1.3e-25 Score=230.78 Aligned_cols=198 Identities=20% Similarity=0.266 Sum_probs=181.3
Q ss_pred ceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeee
Q 006825 370 GMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKC 449 (630)
Q Consensus 370 ~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v 449 (630)
+..+.++ ||++.|+|||+-|...++ ++|+.|++|+|||+.++++ .
T Consensus 142 Kl~rVi~-gHlgWVr~vavdP~n~wf-----------------------------~tgs~DrtikIwDlatg~L-----k 186 (460)
T KOG0285|consen 142 KLYRVIS-GHLGWVRSVAVDPGNEWF-----------------------------ATGSADRTIKIWDLATGQL-----K 186 (460)
T ss_pred eehhhhh-hccceEEEEeeCCCceeE-----------------------------EecCCCceeEEEEcccCeE-----E
Confidence 3445556 999999999999976666 5567778999999999864 6
Q ss_pred eEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeee
Q 006825 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529 (630)
Q Consensus 450 ~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i 529 (630)
.+|.||...|..|+||+--.||+++++|+.||.||++..+.++. +.||...|.+++.+|.-..|++++.|.++
T Consensus 187 ltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~-----YhGHlS~V~~L~lhPTldvl~t~grDst~-- 259 (460)
T KOG0285|consen 187 LTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRH-----YHGHLSGVYCLDLHPTLDVLVTGGRDSTI-- 259 (460)
T ss_pred EeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHH-----hccccceeEEEeccccceeEEecCCcceE--
Confidence 78999999999999999999999999999999999999888877 58999999999999999999999999999
Q ss_pred ecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-c
Q 006825 530 KRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-H 606 (630)
Q Consensus 530 ~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H 606 (630)
+|||+ +...+.+|.||...|..+.+.|- ..++|||+|++||+||+..|+-..++. |
T Consensus 260 ---------------------RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~h 318 (460)
T KOG0285|consen 260 ---------------------RVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHH 318 (460)
T ss_pred ---------------------EEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecc
Confidence 89998 77899999999999999999987 899999999999999999999988888 9
Q ss_pred CCceEEEE-cCCCcEEEEecceecC
Q 006825 607 SDYDISLV-DRLMLRFAYGAFLNVK 630 (630)
Q Consensus 607 ~~~V~sVa-s~~~~~lAsgs~~nIK 630 (630)
.-.|.|++ +|....+|+++.++||
T Consensus 319 kksvral~lhP~e~~fASas~dnik 343 (460)
T KOG0285|consen 319 KKSVRALCLHPKENLFASASPDNIK 343 (460)
T ss_pred cceeeEEecCCchhhhhccCCccce
Confidence 99999999 9999999999999986
No 41
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.94 E-value=8.1e-25 Score=221.04 Aligned_cols=265 Identities=17% Similarity=0.182 Sum_probs=224.6
Q ss_pred ceeeecCccceeEEEeec---ceEeecCCCccEecccCCC-CceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-----
Q 006825 332 FEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSG-GGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER----- 402 (630)
Q Consensus 332 f~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~t-G~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~----- 402 (630)
.+.+.||.+.|..++|.| .+|||+.|..|- +|++.. -+-..+++ ||.+.|..|-|.+||..+.+.+.|+
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~-LWnv~gdceN~~~lk-gHsgAVM~l~~~~d~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIV-LWNVYGDCENFWVLK-GHSGAVMELHGMRDGSHILSCGTDKTVRGW 117 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEE-EEeccccccceeeec-cccceeEeeeeccCCCEEEEecCCceEEEE
Confidence 477899999999999999 899999999999 999754 33455777 9999999999999999999999998
Q ss_pred --CC----ccccCCcceEEEeecCCCe---EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEE
Q 006825 403 --DT----SSEKGGRRSSSATDDSQDV---SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLAS 473 (630)
Q Consensus 403 --dt----~s~~gh~~~Vsa~~~s~d~---l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LAS 473 (630)
++ ...++|...|++++...-+ +.+|+.|+++++||++.++. ++++. .+-.++++.|..++..+.+
T Consensus 118 D~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~-----~~t~~-~kyqltAv~f~d~s~qv~s 191 (338)
T KOG0265|consen 118 DAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA-----IKTFE-NKYQLTAVGFKDTSDQVIS 191 (338)
T ss_pred ecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccch-----hhccc-cceeEEEEEecccccceee
Confidence 33 3389999999998855444 88999999999999988763 33332 4567999999999999999
Q ss_pred EeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEE
Q 006825 474 AGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVF 553 (630)
Q Consensus 474 gS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vw 553 (630)
|+-|+.|++||++.......+ .||...|..+..+|+|.++.+-+.|.++++|+. +-|
T Consensus 192 ggIdn~ikvWd~r~~d~~~~l-----sGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~------------------rp~ 248 (338)
T KOG0265|consen 192 GGIDNDIKVWDLRKNDGLYTL-----SGHADTITGLSLSRYGSFLLSNSMDNTVRVWDV------------------RPF 248 (338)
T ss_pred ccccCceeeeccccCcceEEe-----ecccCceeeEEeccCCCccccccccceEEEEEe------------------ccc
Confidence 999999999999998888875 999999999999999999999999999944443 122
Q ss_pred eCCCCceEEeccCCCC----EEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcEEEEecc
Q 006825 554 ALSDKPICSFQGHLDD----VLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLRFAYGAF 626 (630)
Q Consensus 554 dlsgk~l~tL~GHs~~----V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~lAsgs~ 626 (630)
.....++..|+||.-. .+.++|+|+ ..+..|+.|+.|++||..+..+++.++ |.+.|.+++ .|..-.+.+.+.
T Consensus 249 ~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~s 328 (338)
T KOG0265|consen 249 APSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSS 328 (338)
T ss_pred CCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEecc
Confidence 2244668889887533 467899999 889999999999999999999999998 999999999 887777777665
Q ss_pred e
Q 006825 627 L 627 (630)
Q Consensus 627 ~ 627 (630)
+
T Consensus 329 d 329 (338)
T KOG0265|consen 329 D 329 (338)
T ss_pred C
Confidence 4
No 42
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.94 E-value=4.5e-26 Score=237.38 Aligned_cols=253 Identities=16% Similarity=0.168 Sum_probs=221.0
Q ss_pred ceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC----------CCccc
Q 006825 341 IVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER----------DTSSE 407 (630)
Q Consensus 341 ~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~----------dt~s~ 407 (630)
.|..|.+.| .|++|+.-+-.- +|+..+-.-...+. .|...|+++.++++|.++++|..+. .....
T Consensus 98 ~V~~v~WtPeGRRLltgs~SGEFt-LWNg~~fnFEtilQ-aHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~ 175 (464)
T KOG0284|consen 98 PVNVVRWTPEGRRLLTGSQSGEFT-LWNGTSFNFETILQ-AHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKII 175 (464)
T ss_pred ceeeEEEcCCCceeEeecccccEE-EecCceeeHHHHhh-hhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHh
Confidence 356666766 578999888888 99985544444455 8999999999999999999998887 12234
Q ss_pred cCCc-ceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 006825 408 KGGR-RSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQ 484 (630)
Q Consensus 408 ~gh~-~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWD 484 (630)
..|. -.|.+++|++.- ++++++|++|+|||...... -..|.||.--|.+++|+|.-.+|||||.|..||+||
T Consensus 176 ~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ke-----e~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWD 250 (464)
T KOG0284|consen 176 QAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKE-----ERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWD 250 (464)
T ss_pred hHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCch-----hheeccCCCCcceeccCCccceeEEccCCceeEeec
Confidence 4554 899999999755 99999999999999865532 345799999999999999999999999999999999
Q ss_pred CcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEe
Q 006825 485 VVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSF 563 (630)
Q Consensus 485 l~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL 563 (630)
.+++.++..+ .+|...|..+.|.|++.+|++++.|..+ +++|+ +-+.++++
T Consensus 251 prSg~cl~tl-----h~HKntVl~~~f~~n~N~Llt~skD~~~-----------------------kv~DiR~mkEl~~~ 302 (464)
T KOG0284|consen 251 PRSGSCLATL-----HGHKNTVLAVKFNPNGNWLLTGSKDQSC-----------------------KVFDIRTMKELFTY 302 (464)
T ss_pred CCCcchhhhh-----hhccceEEEEEEcCCCCeeEEccCCceE-----------------------EEEehhHhHHHHHh
Confidence 9999999885 8999999999999999999999999999 88888 47889999
Q ss_pred ccCCCCEEEEEEcCC--CeEEEEECCCcEEEEeCCCCcEEEEEe--cCCceEEEE-cCCCcEEEEeccee
Q 006825 564 QGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYDISLV-DRLMLRFAYGAFLN 628 (630)
Q Consensus 564 ~GHs~~V~sLafSPd--~~LaSgS~DgtVrIWDl~tg~~l~t~~--H~~~V~sVa-s~~~~~lAsgs~~n 628 (630)
+||...|+++.|+|- ++|.+|+.||.|..|.+...+++..+. |...|++++ +|.+-+|++|+.++
T Consensus 303 r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~ 372 (464)
T KOG0284|consen 303 RGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDR 372 (464)
T ss_pred hcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCc
Confidence 999999999999996 899999999999999999888888887 999999999 99999999998763
No 43
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.93 E-value=9e-24 Score=232.97 Aligned_cols=285 Identities=16% Similarity=0.173 Sum_probs=216.0
Q ss_pred eeecCCCceeEEEEcCCCceEeee---c--ceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCC
Q 006825 307 NEIQEDGTWKKVKEVGTGRQLTIE---E--FEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGS 378 (630)
Q Consensus 307 ~e~~~dg~~~~l~dv~TG~~lt~e---e--f~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~g 378 (630)
...+.-|.|..+--...|+.|-.| | +....||...+.+|+.+| .+|+|+.|+.|+ |||..+|.|..++. .
T Consensus 313 ~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVK-vWn~~SgfC~vTFt-e 390 (893)
T KOG0291|consen 313 VSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVK-VWNTQSGFCFVTFT-E 390 (893)
T ss_pred EEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEE-EEeccCceEEEEec-c
Confidence 334455777777666777776544 1 245679999999999999 899999999999 99999999999999 9
Q ss_pred ccCCEEEEEEcCCCCeEEeecCCC-----CC------ccccCC-cceEEEeecC--CCeEEEecCC-cEEEEEeCCCCcc
Q 006825 379 WFKSIRTVASSVTGHKERRSSDER-----DT------SSEKGG-RRSSSATDDS--QDVSFHGQER-VRVRQYGKSCKDL 443 (630)
Q Consensus 379 H~~~V~sVAfSpdG~~lasgS~D~-----dt------~s~~gh-~~~Vsa~~~s--~d~l~Sgs~D-g~VriWd~~~~el 443 (630)
|+..|.+|.|+..|+-+.+.|-|+ |. .++... ....+|++.. .+.++.|+.| ..|.+|+++++++
T Consensus 391 Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGql 470 (893)
T KOG0291|consen 391 HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQL 470 (893)
T ss_pred CCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCee
Confidence 999999999999999999999887 11 112222 2233444444 4446777766 5799999999864
Q ss_pred cceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeC
Q 006825 444 TALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHL 523 (630)
Q Consensus 444 ~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~ 523 (630)
+-.|.||.++|.+++|+|+|..|||+|+|+|||+||+-......+. ..+...+..++|.|+|+.++.+..
T Consensus 471 -----lDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEt-----l~i~sdvl~vsfrPdG~elaVaTl 540 (893)
T KOG0291|consen 471 -----LDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVET-----LEIRSDVLAVSFRPDGKELAVATL 540 (893)
T ss_pred -----eehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeee-----EeeccceeEEEEcCCCCeEEEEEe
Confidence 6789999999999999999999999999999999999765433332 345577899999999999999999
Q ss_pred CCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEE
Q 006825 524 DNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLK 602 (630)
Q Consensus 524 Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~ 602 (630)
||.|.+|+........++.--..+...+.. +......-......++.|++++| .++++|+..+.|+|+++.++-.++
T Consensus 541 dgqItf~d~~~~~q~~~IdgrkD~~~gR~~--~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllk 618 (893)
T KOG0291|consen 541 DGQITFFDIKEAVQVGSIDGRKDLSGGRKE--TDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLK 618 (893)
T ss_pred cceEEEEEhhhceeeccccchhhccccccc--cceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheee
Confidence 999988887654433222211111111100 00111112234467899999999 999999999999999999999998
Q ss_pred EEe
Q 006825 603 IFS 605 (630)
Q Consensus 603 t~~ 605 (630)
.|.
T Consensus 619 kfq 621 (893)
T KOG0291|consen 619 KFQ 621 (893)
T ss_pred eEE
Confidence 886
No 44
>PTZ00421 coronin; Provisional
Probab=99.93 E-value=2.2e-23 Score=232.67 Aligned_cols=232 Identities=12% Similarity=0.131 Sum_probs=178.6
Q ss_pred EEEcCCCceEeeecceeeecCccceeEEEeec----ceEeecCCCccEecccCCCCc-------eeEEecCCccCCEEEE
Q 006825 318 VKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGG-------MKSKKKGSWFKSIRTV 386 (630)
Q Consensus 318 l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~-------~~~~lk~gH~~~V~sV 386 (630)
++...+|+... ....+.||+..|..|+|+| .|++||.|++|+ +||+.++. .+.++. +|...|.+|
T Consensus 56 ~~~~~~G~~~~--~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIk-IWdi~~~~~~~~~~~~l~~L~-gH~~~V~~l 131 (493)
T PTZ00421 56 LKHTDYGKLAS--NPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIM-GWGIPEEGLTQNISDPIVHLQ-GHTKKVGIV 131 (493)
T ss_pred eeccccccCCC--CCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEE-EEecCCCccccccCcceEEec-CCCCcEEEE
Confidence 44444565441 1235789999999999998 699999999999 99997753 466777 899999999
Q ss_pred EEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc
Q 006825 387 ASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL 466 (630)
Q Consensus 387 AfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp 466 (630)
+|+|++. ..+++++.|++|++||+.+++ .+..+.+|...|++|+|+|
T Consensus 132 ~f~P~~~----------------------------~iLaSgs~DgtVrIWDl~tg~-----~~~~l~~h~~~V~sla~sp 178 (493)
T PTZ00421 132 SFHPSAM----------------------------NVLASAGADMVVNVWDVERGK-----AVEVIKCHSDQITSLEWNL 178 (493)
T ss_pred EeCcCCC----------------------------CEEEEEeCCCEEEEEECCCCe-----EEEEEcCCCCceEEEEEEC
Confidence 9999753 224677888999999998764 4677899999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccc-eEEEEECCCCCEEEEee----CCCeeeeeccccccccccc
Q 006825 467 DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNM-LLLANGSPEPTSLSPKH----LDNHLEKKRRGRSINRKSL 541 (630)
Q Consensus 467 DG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~-V~svafSpdg~~lasgs----~Dg~I~i~~~~~~~~~~s~ 541 (630)
+|.+|++++.|++|+|||+++++.+..+ .+|... +..+.|.+++..+++++ .|+.|
T Consensus 179 dG~lLatgs~Dg~IrIwD~rsg~~v~tl-----~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~V-------------- 239 (493)
T PTZ00421 179 DGSLLCTTSKDKKLNIIDPRDGTIVSSV-----EAHASAKSQRCLWAKRKDLIITLGCSKSQQRQI-------------- 239 (493)
T ss_pred CCCEEEEecCCCEEEEEECCCCcEEEEE-----ecCCCCcceEEEEcCCCCeEEEEecCCCCCCeE--------------
Confidence 9999999999999999999998877764 567654 34677888877777654 36777
Q ss_pred ccCccccccEEEeCC--CCceEEeccCC-CCEEEEEEcCC-CeEEEEE-CCCcEEEEeCCCCcEEEEEe--cCCceEEEE
Q 006825 542 SLDHMVVPETVFALS--DKPICSFQGHL-DDVLDLSWSKS-QHLLSSS-MDKTVRLWHLSSKTCLKIFS--HSDYDISLV 614 (630)
Q Consensus 542 s~d~~i~~~~Vwdls--gk~l~tL~GHs-~~V~sLafSPd-~~LaSgS-~DgtVrIWDl~tg~~l~t~~--H~~~V~sVa 614 (630)
++|++. .+++..+..|. ..+....|+++ ++|++++ .|++|++||+.+++++..+. +...+..++
T Consensus 240 ---------klWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~ 310 (493)
T PTZ00421 240 ---------MLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLC 310 (493)
T ss_pred ---------EEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceE
Confidence 677762 34555444333 45666778999 8888877 59999999999999887665 444555554
No 45
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.93 E-value=3.2e-24 Score=226.79 Aligned_cols=265 Identities=17% Similarity=0.183 Sum_probs=226.4
Q ss_pred eecceeeecCccceeEEEeec----ceEeecCCCccEecccCCC----CceeEEec-----C----CccCCEEEEEEcCC
Q 006825 329 IEEFEMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSG----GGMKSKKK-----G----SWFKSIRTVASSVT 391 (630)
Q Consensus 329 ~eef~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~t----G~~~~~lk-----~----gH~~~V~sVAfSpd 391 (630)
+.++-++.+|...|..-++.| .+++|+.|-+.| +|++.. +.....|+ . .-.+-|++++|+-+
T Consensus 168 ~~~~~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ar-i~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~ 246 (524)
T KOG0273|consen 168 PSSKAKVLRHESEVFICAWNPLRDGLLASGSGDSTAR-IWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNND 246 (524)
T ss_pred cccceeeccCCCceEEEecCchhhhhhhccCCcccee-eeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCC
Confidence 345555666999999999999 799999999999 998763 22211122 0 12357999999999
Q ss_pred CCeEEeecCCCC----------CccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCE
Q 006825 392 GHKERRSSDERD----------TSSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSI 459 (630)
Q Consensus 392 G~~lasgS~D~d----------t~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V 459 (630)
|..||+|+.++. +..+-.|+.+|.++.....+ +++++.|+++.+||..+++ ..+.+.-|..+-
T Consensus 247 G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~-----~~q~f~~~s~~~ 321 (524)
T KOG0273|consen 247 GTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGT-----VKQQFEFHSAPA 321 (524)
T ss_pred CCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCce-----EEEeeeeccCCc
Confidence 999999999982 23478899999999999999 9999999999999998775 356677788887
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccccccccc
Q 006825 460 WSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRK 539 (630)
Q Consensus 460 ~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~ 539 (630)
..|.|-.+. .+++++.|+.|+|+.+....++.++ .+|.+.|.++.|.|.+.+|++++.|+++
T Consensus 322 lDVdW~~~~-~F~ts~td~~i~V~kv~~~~P~~t~-----~GH~g~V~alk~n~tg~LLaS~SdD~Tl------------ 383 (524)
T KOG0273|consen 322 LDVDWQSND-EFATSSTDGCIHVCKVGEDRPVKTF-----IGHHGEVNALKWNPTGSLLASCSDDGTL------------ 383 (524)
T ss_pred cceEEecCc-eEeecCCCceEEEEEecCCCcceee-----ecccCceEEEEECCCCceEEEecCCCee------------
Confidence 788886544 5899999999999999888888874 7899999999999999999999999999
Q ss_pred ccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC----------CeEEEEECCCcEEEEeCCCCcEEEEEe-cC
Q 006825 540 SLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS----------QHLLSSSMDKTVRLWHLSSKTCLKIFS-HS 607 (630)
Q Consensus 540 s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd----------~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~ 607 (630)
+||.. .+.....|.+|...|..+.|+|+ ..|++++.|.+|++||+..+.|+++|. |.
T Consensus 384 -----------kiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~ 452 (524)
T KOG0273|consen 384 -----------KIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQ 452 (524)
T ss_pred -----------EeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCC
Confidence 77876 67788899999999999999984 279999999999999999999999996 99
Q ss_pred CceEEEE-cCCCcEEEEeccee
Q 006825 608 DYDISLV-DRLMLRFAYGAFLN 628 (630)
Q Consensus 608 ~~V~sVa-s~~~~~lAsgs~~n 628 (630)
.+|++|+ +|++.++|+|+.+.
T Consensus 453 ~pVysvafS~~g~ylAsGs~dg 474 (524)
T KOG0273|consen 453 EPVYSVAFSPNGRYLASGSLDG 474 (524)
T ss_pred CceEEEEecCCCcEEEecCCCC
Confidence 9999999 99999999998763
No 46
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.92 E-value=5.2e-24 Score=238.91 Aligned_cols=244 Identities=19% Similarity=0.266 Sum_probs=208.3
Q ss_pred cccccccEEEEECCCCcEEEE-eeecCCCc-------------------eeEEEEcCCCceEeeecceeeecCccceeEE
Q 006825 286 AGVAEQGCLIKNLDNGKEFVV-NEIQEDGT-------------------WKKVKEVGTGRQLTIEEFEMCVGHSPIVQEL 345 (630)
Q Consensus 286 ~~~~~~~~~I~~LddG~~~~v-~e~~~dg~-------------------~~~l~dv~TG~~lt~eef~~l~GHs~~V~~L 345 (630)
++..+.+..+|++.+|+...+ -+++.+|. +.++|+..||++. ..+.||...|.++
T Consensus 223 ~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~-----~~l~gh~stv~~~ 297 (537)
T KOG0274|consen 223 SGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECT-----HSLQGHTSSVRCL 297 (537)
T ss_pred ecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEE-----EEecCCCceEEEE
Confidence 334555667888877776666 23222222 6789999999999 9999999999999
Q ss_pred Eeec-ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeE
Q 006825 346 MRRQ-NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVS 424 (630)
Q Consensus 346 afs~-~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l 424 (630)
...+ .+++||.|.||+ +|++.+|..++++. ||...|++|.+. + +.+
T Consensus 298 ~~~~~~~~sgs~D~tVk-VW~v~n~~~l~l~~-~h~~~V~~v~~~--~-----------------------------~~l 344 (537)
T KOG0274|consen 298 TIDPFLLVSGSRDNTVK-VWDVTNGACLNLLR-GHTGPVNCVQLD--E-----------------------------PLL 344 (537)
T ss_pred EccCceEeeccCCceEE-EEeccCcceEEEec-cccccEEEEEec--C-----------------------------CEE
Confidence 9998 788899999999 99999999999999 799999988876 3 345
Q ss_pred EEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCC-ceeeeeecccccCcc
Q 006825 425 FHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVES-ERKGELLEKQEDGHL 503 (630)
Q Consensus 425 ~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg-~~~~~l~~~~~~gh~ 503 (630)
++|+.|++|++|+..+.+ ++.+|.||++.|+++.+... .++++|+.|++||+||+.+. +++..+ .+|.
T Consensus 345 vsgs~d~~v~VW~~~~~~-----cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl-----~~h~ 413 (537)
T KOG0274|consen 345 VSGSYDGTVKVWDPRTGK-----CLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTL-----QGHT 413 (537)
T ss_pred EEEecCceEEEEEhhhce-----eeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhh-----cCCc
Confidence 788899999999998654 78999999999999988554 89999999999999999999 788774 8888
Q ss_pred cceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEecc-CCCCEEEEEEcCCCeE
Q 006825 504 NMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQG-HLDDVLDLSWSKSQHL 581 (630)
Q Consensus 504 ~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~G-Hs~~V~sLafSPd~~L 581 (630)
..+..+.+ .+++|++++.|++| ++|+. .+++++++++ |...|+.+++. +..+
T Consensus 414 ~~v~~l~~--~~~~Lvs~~aD~~I-----------------------k~WD~~~~~~~~~~~~~~~~~v~~l~~~-~~~i 467 (537)
T KOG0274|consen 414 SLVSSLLL--RDNFLVSSSADGTI-----------------------KLWDAEEGECLRTLEGRHVGGVSALALG-KEEI 467 (537)
T ss_pred cccccccc--ccceeEeccccccE-----------------------EEeecccCceeeeeccCCcccEEEeecC-cceE
Confidence 88865554 57899999999999 88888 8899999999 78999999987 4689
Q ss_pred EEEECCCcEEEEeCCCCcEEEEE
Q 006825 582 LSSSMDKTVRLWHLSSKTCLKIF 604 (630)
Q Consensus 582 aSgS~DgtVrIWDl~tg~~l~t~ 604 (630)
++++.|+++++||++++++.+.+
T Consensus 468 l~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 468 LCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred EEEecCCeeEEEecccCchhhhh
Confidence 99999999999999999998876
No 47
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=8.9e-24 Score=207.56 Aligned_cols=257 Identities=15% Similarity=0.136 Sum_probs=220.8
Q ss_pred cceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-----
Q 006825 331 EFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER----- 402 (630)
Q Consensus 331 ef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~----- 402 (630)
+...|.+|.++|.++.|.- +.++.+.|+|+| +|+...|.++++.. ||...|+.+|.+.|...+++++.|+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvr-LWNp~rg~liktYs-ghG~EVlD~~~s~Dnskf~s~GgDk~v~vw 86 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVR-LWNPLRGALIKTYS-GHGHEVLDAALSSDNSKFASCGGDKAVQVW 86 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEE-eecccccceeeeec-CCCceeeeccccccccccccCCCCceEEEE
Confidence 3467889999999999976 888999999999 99999999999999 9999999999999999999999998
Q ss_pred --CCcc----ccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEE
Q 006825 403 --DTSS----EKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASA 474 (630)
Q Consensus 403 --dt~s----~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASg 474 (630)
++++ +.||...|.++.|..+. +++|+.|.+||+||.....+ .++|.|..-.+.|.+|.. .+..|++|
T Consensus 87 DV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~---ePiQildea~D~V~Si~v--~~heIvaG 161 (307)
T KOG0316|consen 87 DVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSF---EPIQILDEAKDGVSSIDV--AEHEIVAG 161 (307)
T ss_pred EcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCC---CccchhhhhcCceeEEEe--cccEEEee
Confidence 3433 89999999999999876 89999999999999977654 468889999999999998 56789999
Q ss_pred eCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEe
Q 006825 475 GEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFA 554 (630)
Q Consensus 475 S~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwd 554 (630)
|.||++|.||++.|..... ....+|+++.|++++...+.++.|.++ ++.+
T Consensus 162 S~DGtvRtydiR~G~l~sD-------y~g~pit~vs~s~d~nc~La~~l~stl-----------------------rLlD 211 (307)
T KOG0316|consen 162 SVDGTVRTYDIRKGTLSSD-------YFGHPITSVSFSKDGNCSLASSLDSTL-----------------------RLLD 211 (307)
T ss_pred ccCCcEEEEEeecceeehh-------hcCCcceeEEecCCCCEEEEeecccee-----------------------eecc
Confidence 9999999999998875433 234679999999999999999999999 5555
Q ss_pred C-CCCceEEeccCCCCE--EEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCc-eEEEE-cCCCcEEEEe
Q 006825 555 L-SDKPICSFQGHLDDV--LDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDY-DISLV-DRLMLRFAYG 624 (630)
Q Consensus 555 l-sgk~l~tL~GHs~~V--~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~-V~sVa-s~~~~~lAsg 624 (630)
- +|++++.++||...= +..+++.. ..+++||.||.|.+||+.....+..+. |... |+++. .|....+.++
T Consensus 212 k~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A 288 (307)
T KOG0316|consen 212 KETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITA 288 (307)
T ss_pred cchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEe
Confidence 5 899999999998764 44566666 899999999999999999999999998 4444 67777 6665555444
No 48
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.92 E-value=8.1e-25 Score=228.05 Aligned_cols=264 Identities=15% Similarity=0.207 Sum_probs=218.9
Q ss_pred cccccEEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeeccee-eecCccceeEEEeec---ceEeecCCCccEec
Q 006825 288 VAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEM-CVGHSPIVQELMRRQ---NVEEGNKDSFDLNN 363 (630)
Q Consensus 288 ~~~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~-l~GHs~~V~~Lafs~---~laSgS~D~tvr~v 363 (630)
.+..+..|+=..+|+++++.....+ ..||+.. .. -|++ +..|-.+|+.+.+++ .++||+.++.|+ .
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGE---FtLWNg~---~f---nFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iK-y 164 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGE---FTLWNGT---SF---NFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIK-Y 164 (464)
T ss_pred cccceeeEEEcCCCceeEeeccccc---EEEecCc---ee---eHHHHhhhhcccceeEEEccCCCEEEEcCCCceEE-e
Confidence 4455677777899999999776222 4588762 22 2344 457999999999998 899999999999 9
Q ss_pred ccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-----------CCccccCCcceEEEeecCCCe--EEEecCC
Q 006825 364 NGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-----------DTSSEKGGRRSSSATDDSQDV--SFHGQER 430 (630)
Q Consensus 364 WD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-----------dt~s~~gh~~~Vsa~~~s~d~--l~Sgs~D 430 (630)
|+.+-.. ++.....|...|+++||||.-..+++.|+|. +...+.||.-.|.+++..+.. +++|+.|
T Consensus 165 Wqpnmnn-Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskD 243 (464)
T KOG0284|consen 165 WQPNMNN-VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKD 243 (464)
T ss_pred cccchhh-hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCC
Confidence 9875433 3334436779999999999888999999997 223479999999999999876 8999999
Q ss_pred cEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEE
Q 006825 431 VRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLAN 510 (630)
Q Consensus 431 g~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~sva 510 (630)
..|++||.+++. |+.+|.+|+..|..+.|++++++|+|+|.|..++|+|+++-+.+.. +.+|...|.+++
T Consensus 244 nlVKlWDprSg~-----cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~-----~r~Hkkdv~~~~ 313 (464)
T KOG0284|consen 244 NLVKLWDPRSGS-----CLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFT-----YRGHKKDVTSLT 313 (464)
T ss_pred ceeEeecCCCcc-----hhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHH-----hhcchhhheeec
Confidence 999999998875 7889999999999999999999999999999999999986666655 589999999999
Q ss_pred ECCC-CCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCC-CCceEEe-ccCCCCEEEEEEcCC-CeEEEEEC
Q 006825 511 GSPE-PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS-DKPICSF-QGHLDDVLDLSWSKS-QHLLSSSM 586 (630)
Q Consensus 511 fSpd-g~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdls-gk~l~tL-~GHs~~V~sLafSPd-~~LaSgS~ 586 (630)
|+|- ..++.+++.|+.| ..|.+. .+++..+ .+|...|++|+|+|- .+|++|+.
T Consensus 314 WhP~~~~lftsgg~Dgsv-----------------------vh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsn 370 (464)
T KOG0284|consen 314 WHPLNESLFTSGGSDGSV-----------------------VHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSN 370 (464)
T ss_pred cccccccceeeccCCCce-----------------------EEEeccccccccCCCcccccceeeeeccccceeEeecCC
Confidence 9997 5678889999998 555552 4455444 479999999999999 88999999
Q ss_pred CCcEEEEeC
Q 006825 587 DKTVRLWHL 595 (630)
Q Consensus 587 DgtVrIWDl 595 (630)
|.++|+|.-
T Consensus 371 d~t~rfw~r 379 (464)
T KOG0284|consen 371 DRTVRFWTR 379 (464)
T ss_pred Ccceeeecc
Confidence 999999964
No 49
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.92 E-value=1.7e-22 Score=238.43 Aligned_cols=273 Identities=16% Similarity=0.137 Sum_probs=205.5
Q ss_pred ccEEEEECCCCcEEEEeeecCCCceeEEEEcCC----CceEeeecceeeecCccceeEEEeec----ceEeecCCCccEe
Q 006825 291 QGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGT----GRQLTIEEFEMCVGHSPIVQELMRRQ----NVEEGNKDSFDLN 362 (630)
Q Consensus 291 ~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~T----G~~lt~eef~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~ 362 (630)
.++.|.--.+|+.+++.. .||. .++|+..+ ++.+. .....+.+ ...|..++|.+ .|++++.|++++
T Consensus 485 ~V~~i~fs~dg~~latgg--~D~~-I~iwd~~~~~~~~~~~~-~~~~~~~~-~~~v~~l~~~~~~~~~las~~~Dg~v~- 558 (793)
T PLN00181 485 LVCAIGFDRDGEFFATAG--VNKK-IKIFECESIIKDGRDIH-YPVVELAS-RSKLSGICWNSYIKSQVASSNFEGVVQ- 558 (793)
T ss_pred cEEEEEECCCCCEEEEEe--CCCE-EEEEECCcccccccccc-cceEEecc-cCceeeEEeccCCCCEEEEEeCCCeEE-
Confidence 344454446787666543 3554 67999754 22110 01123333 45788999976 699999999999
Q ss_pred cccCCCCceeEEecCCccCCEEEEEEcC-CCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCC
Q 006825 363 NNGSSGGGMKSKKKGSWFKSIRTVASSV-TGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCK 441 (630)
Q Consensus 363 vWD~~tG~~~~~lk~gH~~~V~sVAfSp-dG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~ 441 (630)
+||+.+++.+..++ +|.+.|.+|+|+| +|.+| ++|+.|++|++||+..+
T Consensus 559 lWd~~~~~~~~~~~-~H~~~V~~l~~~p~~~~~L-----------------------------~Sgs~Dg~v~iWd~~~~ 608 (793)
T PLN00181 559 VWDVARSQLVTEMK-EHEKRVWSIDYSSADPTLL-----------------------------ASGSDDGSVKLWSINQG 608 (793)
T ss_pred EEECCCCeEEEEec-CCCCCEEEEEEcCCCCCEE-----------------------------EEEcCCCEEEEEECCCC
Confidence 99999999999998 9999999999997 56555 56677889999999765
Q ss_pred cccceeeeeEecccCcCEEEEEEc-cCCCEEEEEeCCCcEEEEECcCCce-eeeeecccccCcccceEEEEECCCCCEEE
Q 006825 442 DLTALYKCQEIQAHNGSIWSIKFS-LDGRYLASAGEDCVIHVWQVVESER-KGELLEKQEDGHLNMLLLANGSPEPTSLS 519 (630)
Q Consensus 442 el~~~~~v~tL~gHt~~V~sVaFS-pDG~~LASgS~DgtIrVWDl~tg~~-~~~l~~~~~~gh~~~V~svafSpdg~~la 519 (630)
. ++.++..| ..|.++.|+ ++|.+|++|+.|++|++||+.+... ... ..+|...|..+.|. ++.+++
T Consensus 609 ~-----~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~-----~~~h~~~V~~v~f~-~~~~lv 676 (793)
T PLN00181 609 V-----SIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCT-----MIGHSKTVSYVRFV-DSSTLV 676 (793)
T ss_pred c-----EEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceE-----ecCCCCCEEEEEEe-CCCEEE
Confidence 4 35566655 689999995 5799999999999999999987653 333 37899999999997 788999
Q ss_pred EeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCC
Q 006825 520 PKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK 598 (630)
Q Consensus 520 sgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg 598 (630)
+++.|++|++|+..... -....+++.++.+|...|..++|+|+ ++|++|+.|++|+||+....
T Consensus 677 s~s~D~~ikiWd~~~~~----------------~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 677 SSSTDNTLKLWDLSMSI----------------SGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred EEECCCEEEEEeCCCCc----------------cccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 99999999444432100 00023678899999999999999999 99999999999999998766
Q ss_pred cEEEEEe--------------cCCceEEEE-cCCCcEEEEecce
Q 006825 599 TCLKIFS--------------HSDYDISLV-DRLMLRFAYGAFL 627 (630)
Q Consensus 599 ~~l~t~~--------------H~~~V~sVa-s~~~~~lAsgs~~ 627 (630)
..+..+. |...|.+++ ++.+..+++++..
T Consensus 741 ~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~d 784 (793)
T PLN00181 741 MPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANST 784 (793)
T ss_pred CceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCC
Confidence 5443331 446689999 8888888777643
No 50
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.92 E-value=6.1e-25 Score=233.01 Aligned_cols=261 Identities=17% Similarity=0.210 Sum_probs=217.3
Q ss_pred ceeeecCccceeEEEeec----ceEeecCCCccEecccCCC-CceeEEecCCccCCEEEEEEcCCCCeEEeecCCC----
Q 006825 332 FEMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSG-GGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER---- 402 (630)
Q Consensus 332 f~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~t-G~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~---- 402 (630)
..++.||+..|.+|.|.| .|+|++.|++|+ ||++-. +.+++++. ||...|+.++|+.+|..+.+++.|+
T Consensus 207 ~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vk-lW~vy~~~~~lrtf~-gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 207 SHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVK-LWNVYDDRRCLRTFK-GHRKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred eeeccCCccccchhhhccceeeEEEecCCCceEE-EEEEecCcceehhhh-cchhhhhhhhccccCCeeeeeecceeeee
Confidence 478999999999999999 799999999999 999977 99999999 9999999999999999999999998
Q ss_pred ---CCcc--ccCC-cceEEEeecCCCe---EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEE
Q 006825 403 ---DTSS--EKGG-RRSSSATDDSQDV---SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLAS 473 (630)
Q Consensus 403 ---dt~s--~~gh-~~~Vsa~~~s~d~---l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LAS 473 (630)
+|+. .+.| .....++.|.++. ++.|..|++|+.||+.++++ +|++..|-+.|..|.|-++|++++|
T Consensus 285 wDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv-----vqeYd~hLg~i~~i~F~~~g~rFis 359 (503)
T KOG0282|consen 285 WDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV-----VQEYDRHLGAILDITFVDEGRRFIS 359 (503)
T ss_pred eccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHH-----HHHHHhhhhheeeeEEccCCceEee
Confidence 3333 2222 3356777777766 89999999999999999874 7889999999999999999999999
Q ss_pred EeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEE
Q 006825 474 AGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVF 553 (630)
Q Consensus 474 gS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vw 553 (630)
.++|++++||+...+-.+... ...+.....++..+|.+.++++-+.|..| .+|
T Consensus 360 sSDdks~riWe~~~~v~ik~i----~~~~~hsmP~~~~~P~~~~~~aQs~dN~i-----------------------~if 412 (503)
T KOG0282|consen 360 SSDDKSVRIWENRIPVPIKNI----ADPEMHTMPCLTLHPNGKWFAAQSMDNYI-----------------------AIF 412 (503)
T ss_pred eccCccEEEEEcCCCccchhh----cchhhccCcceecCCCCCeehhhccCceE-----------------------EEE
Confidence 999999999999877665543 23344556789999999999999999888 344
Q ss_pred eC----CCCceEEeccCC--CCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cC-CCcEEEE
Q 006825 554 AL----SDKPICSFQGHL--DDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DR-LMLRFAY 623 (630)
Q Consensus 554 dl----sgk~l~tL~GHs--~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~-~~~~lAs 623 (630)
.. .-..-..|+||. +.-..+.|||| .+|++|..||.+.+||..+.+.+..++ |...+..+. .| .-..+|+
T Consensus 413 s~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat 492 (503)
T KOG0282|consen 413 STVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVAT 492 (503)
T ss_pred ecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEe
Confidence 33 223445688886 44577899999 999999999999999999999999999 999988888 44 3334555
Q ss_pred ecc
Q 006825 624 GAF 626 (630)
Q Consensus 624 gs~ 626 (630)
++.
T Consensus 493 ~~w 495 (503)
T KOG0282|consen 493 CGW 495 (503)
T ss_pred ccc
Confidence 543
No 51
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.7e-23 Score=207.64 Aligned_cols=214 Identities=20% Similarity=0.236 Sum_probs=179.1
Q ss_pred eeEEecCCccCCEEEEEEcCC-CCeEEeecCCC-----CCcc----------ccCCcceEEEeecCCCe--EEEecCCcE
Q 006825 371 MKSKKKGSWFKSIRTVASSVT-GHKERRSSDER-----DTSS----------EKGGRRSSSATDDSQDV--SFHGQERVR 432 (630)
Q Consensus 371 ~~~~lk~gH~~~V~sVAfSpd-G~~lasgS~D~-----dt~s----------~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~ 432 (630)
.++++. ||+++|..+||+|. |..|++++.|+ ++.. ..+|++.|..++++|.+ +++++.|.+
T Consensus 6 ~~~~~~-gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t 84 (312)
T KOG0645|consen 6 LEQKLS-GHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT 84 (312)
T ss_pred eEEeec-CCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce
Confidence 456677 99999999999998 88999999998 2221 45799999999999988 999999999
Q ss_pred EEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEEC
Q 006825 433 VRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGS 512 (630)
Q Consensus 433 VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafS 512 (630)
+-||....+++ .++.+|.||...|.|++|+++|++|||++.|+.|-||.+..+...... ..+.+|..-|..+.|+
T Consensus 85 ~~Iw~k~~~ef---ecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~--aVL~~HtqDVK~V~WH 159 (312)
T KOG0645|consen 85 VVIWKKEDGEF---ECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECI--AVLQEHTQDVKHVIWH 159 (312)
T ss_pred EEEeecCCCce---eEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEE--eeeccccccccEEEEc
Confidence 99999877665 589999999999999999999999999999999999999754432211 2258999999999999
Q ss_pred CCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEE
Q 006825 513 PEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVR 591 (630)
Q Consensus 513 pdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVr 591 (630)
|...+|++++.|.+|++|.... +-.-.++++|.||...|.+++|+|. ..|++++.|++|+
T Consensus 160 Pt~dlL~S~SYDnTIk~~~~~~-------------------dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~ 220 (312)
T KOG0645|consen 160 PTEDLLFSCSYDNTIKVYRDED-------------------DDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVS 220 (312)
T ss_pred CCcceeEEeccCCeEEEEeecC-------------------CCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceE
Confidence 9999999999999995443210 1123689999999999999999998 8999999999999
Q ss_pred EEeCCCCcEEEEEe--cCCceEEEE
Q 006825 592 LWHLSSKTCLKIFS--HSDYDISLV 614 (630)
Q Consensus 592 IWDl~tg~~l~t~~--H~~~V~sVa 614 (630)
||... ..+. |...++.|+
T Consensus 221 Iw~~~-----~~~~~~~sr~~Y~v~ 240 (312)
T KOG0645|consen 221 IWRLY-----TDLSGMHSRALYDVP 240 (312)
T ss_pred eeeec-----cCcchhcccceEeee
Confidence 99865 2233 777777777
No 52
>PTZ00420 coronin; Provisional
Probab=99.92 E-value=2.1e-22 Score=226.81 Aligned_cols=248 Identities=10% Similarity=0.023 Sum_probs=183.8
Q ss_pred ccccEEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec----ceEeecCCCccEecc
Q 006825 289 AEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNN 364 (630)
Q Consensus 289 ~~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vW 364 (630)
.+....+|+...|..+-+ .+||+......+ ..+.||...|..|+|+| .||||+.|++|+ +|
T Consensus 38 ~~~~A~~w~~~gGG~~gv---------I~L~~~~r~~~v-----~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIr-IW 102 (568)
T PTZ00420 38 SGFVAVPWEVEGGGLIGA---------IRLENQMRKPPV-----IKLKGHTSSILDLQFNPCFSEILASGSEDLTIR-VW 102 (568)
T ss_pred CCeEEEEEEcCCCCceeE---------EEeeecCCCceE-----EEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEE-EE
Confidence 344566777766543322 347776665555 78899999999999998 699999999999 99
Q ss_pred cCCCCc--------eeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEE
Q 006825 365 GSSGGG--------MKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQY 436 (630)
Q Consensus 365 D~~tG~--------~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriW 436 (630)
|+.++. .+..+. +|...|.+|+|+|++..+ +++++.|++|++|
T Consensus 103 Di~t~~~~~~~i~~p~~~L~-gH~~~V~sVaf~P~g~~i----------------------------LaSgS~DgtIrIW 153 (568)
T PTZ00420 103 EIPHNDESVKEIKDPQCILK-GHKKKISIIDWNPMNYYI----------------------------MCSSGFDSFVNIW 153 (568)
T ss_pred ECCCCCccccccccceEEee-cCCCcEEEEEECCCCCeE----------------------------EEEEeCCCeEEEE
Confidence 998653 234566 899999999999987643 3567788999999
Q ss_pred eCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceE-----EEEE
Q 006825 437 GKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLL-----LANG 511 (630)
Q Consensus 437 d~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~-----svaf 511 (630)
|+..++. +..+. |...|.+++|+|+|.+|++++.|++|+|||+++++.+.++ .+|.+.+. ...|
T Consensus 154 Dl~tg~~-----~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl-----~gH~g~~~s~~v~~~~f 222 (568)
T PTZ00420 154 DIENEKR-----AFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSF-----HIHDGGKNTKNIWIDGL 222 (568)
T ss_pred ECCCCcE-----EEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEE-----ecccCCceeEEEEeeeE
Confidence 9987642 33454 6678999999999999999999999999999999887774 67766543 3446
Q ss_pred CCCCCEEEEeeCCC----eeeeecccccccccccccCccccccEEEeCC--CCceEEecc--CCCCEEEEEEcCC-CeEE
Q 006825 512 SPEPTSLSPKHLDN----HLEKKRRGRSINRKSLSLDHMVVPETVFALS--DKPICSFQG--HLDDVLDLSWSKS-QHLL 582 (630)
Q Consensus 512 Spdg~~lasgs~Dg----~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdls--gk~l~tL~G--Hs~~V~sLafSPd-~~La 582 (630)
++++.+|++++.++ .| ++|++. ++++..+.. +.+.+......++ .+|+
T Consensus 223 s~d~~~IlTtG~d~~~~R~V-----------------------kLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~l 279 (568)
T PTZ00420 223 GGDDNYILSTGFSKNNMREM-----------------------KLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYL 279 (568)
T ss_pred cCCCCEEEEEEcCCCCccEE-----------------------EEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEE
Confidence 68988999877664 56 788873 566665533 3333333333444 7888
Q ss_pred EEECCCcEEEEeCCCCcE--EEEEecCCceEEEE
Q 006825 583 SSSMDKTVRLWHLSSKTC--LKIFSHSDYDISLV 614 (630)
Q Consensus 583 SgS~DgtVrIWDl~tg~~--l~t~~H~~~V~sVa 614 (630)
+|+.|++||+|++..+.+ +..+.+..++.+++
T Consensus 280 sGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~ 313 (568)
T PTZ00420 280 IGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFG 313 (568)
T ss_pred EEECCCeEEEEEccCCcEEeecccccCCCccceE
Confidence 999999999999987753 22333666666666
No 53
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.91 E-value=2.5e-23 Score=228.15 Aligned_cols=246 Identities=14% Similarity=0.156 Sum_probs=208.2
Q ss_pred eeeecCccceeEEEeec--ceEeecCCCccEecccCCCCceeE--EecCCccCCEEE-EEEcC-CCCeEEeecCCC----
Q 006825 333 EMCVGHSPIVQELMRRQ--NVEEGNKDSFDLNNNGSSGGGMKS--KKKGSWFKSIRT-VASSV-TGHKERRSSDER---- 402 (630)
Q Consensus 333 ~~l~GHs~~V~~Lafs~--~laSgS~D~tvr~vWD~~tG~~~~--~lk~gH~~~V~s-VAfSp-dG~~lasgS~D~---- 402 (630)
+.+.||..-|+.+++.+ .++++|.|+|++ +|+-..++.+. .+. +|.+.|.. +++-+ ++-++++|+.|.
T Consensus 8 ~~l~gH~~DVr~v~~~~~~~i~s~sRd~t~~-vw~~~~~~~l~~~~~~-~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v 85 (745)
T KOG0301|consen 8 HELEGHKSDVRAVAVTDGVCIISGSRDGTVK-VWAKKGKQYLETHAFE-GPKGFIANSICYAESDKGRLVVGGMDTTIIV 85 (745)
T ss_pred EEeccCccchheeEecCCeEEeecCCCCcee-eeeccCcccccceecc-cCcceeeccceeccccCcceEeecccceEEE
Confidence 56789999999999988 689999999999 99886655444 344 78888887 88886 555688999887
Q ss_pred -------CCccccCCcceEEEeecCCCe-EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEE
Q 006825 403 -------DTSSEKGGRRSSSATDDSQDV-SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASA 474 (630)
Q Consensus 403 -------dt~s~~gh~~~Vsa~~~s~d~-l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASg 474 (630)
....++||+.-|+++....+. +++|+.|.++++|... + +...++||+.+||++++-|.+ .++||
T Consensus 86 ~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~--~-----l~~~l~gH~asVWAv~~l~e~-~~vTg 157 (745)
T KOG0301|consen 86 FKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIG--E-----LVYSLQGHTASVWAVASLPEN-TYVTG 157 (745)
T ss_pred EecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecch--h-----hhcccCCcchheeeeeecCCC-cEEec
Confidence 123499999999999977777 7999999999999653 2 456799999999999999988 79999
Q ss_pred eCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEe
Q 006825 475 GEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFA 554 (630)
Q Consensus 475 S~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwd 554 (630)
|.|++||+|.- ++.+++ +.+|...|..+++-+++. +++++.||.| +.|+
T Consensus 158 saDKtIklWk~--~~~l~t-----f~gHtD~VRgL~vl~~~~-flScsNDg~I-----------------------r~w~ 206 (745)
T KOG0301|consen 158 SADKTIKLWKG--GTLLKT-----FSGHTDCVRGLAVLDDSH-FLSCSNDGSI-----------------------RLWD 206 (745)
T ss_pred cCcceeeeccC--Cchhhh-----hccchhheeeeEEecCCC-eEeecCCceE-----------------------EEEe
Confidence 99999999986 566666 489999999999998765 5678899999 8999
Q ss_pred CCCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEecCC-ceEEEE-cCCCcEE
Q 006825 555 LSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSD-YDISLV-DRLMLRF 621 (630)
Q Consensus 555 lsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~H~~-~V~sVa-s~~~~~l 621 (630)
++|+.+.++.||+..|++++..++ +.++|++.|+++|||+.. +|.+.+.|.. .||++. -.++..+
T Consensus 207 ~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDIv 274 (745)
T KOG0301|consen 207 LDGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDIV 274 (745)
T ss_pred ccCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCCEE
Confidence 999999999999999999996665 999999999999999976 9999999665 899888 3344433
No 54
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.91 E-value=4.3e-23 Score=227.59 Aligned_cols=260 Identities=13% Similarity=0.059 Sum_probs=222.9
Q ss_pred eeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCC-------
Q 006825 334 MCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERD------- 403 (630)
Q Consensus 334 ~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~d------- 403 (630)
.+.||..-|..|+++. .++||++ +.++ +|+..|+++++++.-+ .+.+..|-|.+++++.|.+.++
T Consensus 368 ~~~GHR~dVRsl~vS~d~~~~~Sga~-~Sik-iWn~~t~kciRTi~~~---y~l~~~Fvpgd~~Iv~G~k~Gel~vfdla 442 (888)
T KOG0306|consen 368 EIGGHRSDVRSLCVSSDSILLASGAG-ESIK-IWNRDTLKCIRTITCG---YILASKFVPGDRYIVLGTKNGELQVFDLA 442 (888)
T ss_pred eeccchhheeEEEeecCceeeeecCC-CcEE-EEEccCcceeEEeccc---cEEEEEecCCCceEEEeccCCceEEEEee
Confidence 4679999999999998 4555555 5677 9999999999999843 8999999999999999987662
Q ss_pred ----CccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcc--c------ceeeeeEecccCcCEEEEEEccCCC
Q 006825 404 ----TSSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDL--T------ALYKCQEIQAHNGSIWSIKFSLDGR 469 (630)
Q Consensus 404 ----t~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el--~------~~~~v~tL~gHt~~V~sVaFSpDG~ 469 (630)
....+.|...++.++..+++ +++|+.|.+|++|+.....- . .+...++| .-+..|.|+.+||||+
T Consensus 443 S~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtL-el~ddvL~v~~Spdgk 521 (888)
T KOG0306|consen 443 SASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTL-ELEDDVLCVSVSPDGK 521 (888)
T ss_pred hhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEE-eccccEEEEEEcCCCc
Confidence 12256899999999999988 99999999999999642211 0 01111222 2457899999999999
Q ss_pred EEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccc
Q 006825 470 YLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVP 549 (630)
Q Consensus 470 ~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~ 549 (630)
+||.+-.|.||+||-+.+-+..-. +.||.-+|.++.++||++++++|+.|.+|
T Consensus 522 ~LaVsLLdnTVkVyflDtlKFfls-----LYGHkLPV~smDIS~DSklivTgSADKnV---------------------- 574 (888)
T KOG0306|consen 522 LLAVSLLDNTVKVYFLDTLKFFLS-----LYGHKLPVLSMDISPDSKLIVTGSADKNV---------------------- 574 (888)
T ss_pred EEEEEeccCeEEEEEecceeeeee-----ecccccceeEEeccCCcCeEEeccCCCce----------------------
Confidence 999999999999999988766555 48999999999999999999999999999
Q ss_pred cEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcEEEEec
Q 006825 550 ETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLRFAYGA 625 (630)
Q Consensus 550 ~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~lAsgs 625 (630)
++|.+ -|.|.+.|.+|.+.|.++.|-|. .++.|++.|+.||-||...-++++++. |...|+|++ .|++.++.+++
T Consensus 575 -KiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~s 653 (888)
T KOG0306|consen 575 -KIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSS 653 (888)
T ss_pred -EEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEecc
Confidence 88988 68999999999999999999999 889999999999999999999999998 999999999 99999988887
Q ss_pred ce
Q 006825 626 FL 627 (630)
Q Consensus 626 ~~ 627 (630)
.+
T Consensus 654 hD 655 (888)
T KOG0306|consen 654 HD 655 (888)
T ss_pred CC
Confidence 64
No 55
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.91 E-value=8.3e-23 Score=203.30 Aligned_cols=252 Identities=18% Similarity=0.187 Sum_probs=196.6
Q ss_pred CceeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecC
Q 006825 259 DSMSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGH 338 (630)
Q Consensus 259 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GH 338 (630)
-||..+-||.+| +++.-+.+.++||++-+ .|.+. ....||
T Consensus 24 ~Sv~wn~~g~~l--------------asgs~dktv~v~n~e~~-r~~~~-------------------------~~~~gh 63 (313)
T KOG1407|consen 24 HSVAWNCDGTKL--------------ASGSFDKTVSVWNLERD-RFRKE-------------------------LVYRGH 63 (313)
T ss_pred eEEEEcccCcee--------------eecccCCceEEEEecch-hhhhh-------------------------hcccCC
Confidence 456777788777 55566677888888655 22211 245789
Q ss_pred ccceeEEEeec----ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCC-----Cc----
Q 006825 339 SPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERD-----TS---- 405 (630)
Q Consensus 339 s~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~d-----t~---- 405 (630)
+..|-+|++.| .+++++.|+++| +||..++++..... .-...|. +.|+|+|++++.++.|.. ..
T Consensus 64 ~~svdql~w~~~~~d~~atas~dk~ir-~wd~r~~k~~~~i~-~~~eni~-i~wsp~g~~~~~~~kdD~it~id~r~~~~ 140 (313)
T KOG1407|consen 64 TDSVDQLCWDPKHPDLFATASGDKTIR-IWDIRSGKCTARIE-TKGENIN-ITWSPDGEYIAVGNKDDRITFIDARTYKI 140 (313)
T ss_pred CcchhhheeCCCCCcceEEecCCceEE-EEEeccCcEEEEee-ccCcceE-EEEcCCCCEEEEecCcccEEEEEecccce
Confidence 99999999987 799999999999 99999999998877 5666776 899999999999887761 11
Q ss_pred ----cccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEE
Q 006825 406 ----SEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIH 481 (630)
Q Consensus 406 ----s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIr 481 (630)
..+-..+.++.- .+.+.++....-|+|.|.... .+..++++++|.....||.|+|+|++||+|+.|-.+-
T Consensus 141 ~~~~~~~~e~ne~~w~-~~nd~Fflt~GlG~v~ILsyp-----sLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvS 214 (313)
T KOG1407|consen 141 VNEEQFKFEVNEISWN-NSNDLFFLTNGLGCVEILSYP-----SLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVS 214 (313)
T ss_pred eehhcccceeeeeeec-CCCCEEEEecCCceEEEEecc-----ccccccccccCCcceEEEEECCCCceEeeccccceee
Confidence 122222333333 555666666677888887553 3457899999999999999999999999999999999
Q ss_pred EEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCce
Q 006825 482 VWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPI 560 (630)
Q Consensus 482 VWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l 560 (630)
|||+..--+++.+ ..+..+|..+.|+.+|++||+++.|..|.+ =.+ +|..+
T Consensus 215 LWD~~ELiC~R~i-----sRldwpVRTlSFS~dg~~lASaSEDh~IDI-----------------------A~vetGd~~ 266 (313)
T KOG1407|consen 215 LWDVDELICERCI-----SRLDWPVRTLSFSHDGRMLASASEDHFIDI-----------------------AEVETGDRV 266 (313)
T ss_pred ccChhHhhhheee-----ccccCceEEEEeccCcceeeccCccceEEe-----------------------EecccCCeE
Confidence 9999988888874 788899999999999999999999998842 222 56666
Q ss_pred EEeccCCCCEEEEEEcCC-CeEEEEECCC
Q 006825 561 CSFQGHLDDVLDLSWSKS-QHLLSSSMDK 588 (630)
Q Consensus 561 ~tL~GHs~~V~sLafSPd-~~LaSgS~Dg 588 (630)
..++ |.++...|+|+|. .+||-++.|+
T Consensus 267 ~eI~-~~~~t~tVAWHPk~~LLAyA~ddk 294 (313)
T KOG1407|consen 267 WEIP-CEGPTFTVAWHPKRPLLAYACDDK 294 (313)
T ss_pred EEee-ccCCceeEEecCCCceeeEEecCC
Confidence 6555 7788899999999 8888777653
No 56
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=3.6e-23 Score=215.91 Aligned_cols=267 Identities=16% Similarity=0.118 Sum_probs=221.3
Q ss_pred ceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCc---eeEEecCCccCCEEEEEEcCCCCeEEee
Q 006825 325 RQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGG---MKSKKKGSWFKSIRTVASSVTGHKERRS 398 (630)
Q Consensus 325 ~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~---~~~~lk~gH~~~V~sVAfSpdG~~lasg 398 (630)
.++..++.+.+..|+.-|+.+.|++ +|||+|.|.|+. +|.+..-. .++++. ||..+|.-++||||.+|+++.
T Consensus 210 ~qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Tai-iw~v~~d~~~kl~~tlv-gh~~~V~yi~wSPDdryLlaC 287 (519)
T KOG0293|consen 210 LQIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAI-IWIVVYDVHFKLKKTLV-GHSQPVSYIMWSPDDRYLLAC 287 (519)
T ss_pred ccCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEE-EEEEecCcceeeeeeee-cccCceEEEEECCCCCeEEec
Confidence 4677788899999999999999999 899999999999 99886644 477777 999999999999999999998
Q ss_pred cCCC-------CCcc-----ccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEE
Q 006825 399 SDER-------DTSS-----EKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKF 464 (630)
Q Consensus 399 S~D~-------dt~s-----~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaF 464 (630)
+.++ +++. ..++...+++.+..+|+ +++|+.|+++..||.....+....-+ ....|++|++
T Consensus 288 g~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gv-----r~~~v~dlai 362 (519)
T KOG0293|consen 288 GFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGV-----RDPKVHDLAI 362 (519)
T ss_pred CchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhccccc-----ccceeEEEEE
Confidence 8776 2322 44466888899999998 89999999999999987654332211 2256999999
Q ss_pred ccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccC
Q 006825 465 SLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLD 544 (630)
Q Consensus 465 SpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d 544 (630)
.+||+++++...|..|++++.++...... .....+|+++..+.+++++++--.+..+
T Consensus 363 t~Dgk~vl~v~~d~~i~l~~~e~~~dr~l------ise~~~its~~iS~d~k~~LvnL~~qei----------------- 419 (519)
T KOG0293|consen 363 TYDGKYVLLVTVDKKIRLYNREARVDRGL------ISEEQPITSFSISKDGKLALVNLQDQEI----------------- 419 (519)
T ss_pred cCCCcEEEEEecccceeeechhhhhhhcc------ccccCceeEEEEcCCCcEEEEEcccCee-----------------
Confidence 99999999999999999999987655433 3344689999999999999998888888
Q ss_pred ccccccEEEeC-CCCceEEeccCCCC--EEEEEEcC-C-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cC-
Q 006825 545 HMVVPETVFAL-SDKPICSFQGHLDD--VLDLSWSK-S-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DR- 616 (630)
Q Consensus 545 ~~i~~~~Vwdl-sgk~l~tL~GHs~~--V~sLafSP-d-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~- 616 (630)
.+|++ ..+.++.+.||... |-.-+|-. + .+++|||.|+.|+||+..+|+++.++. |...|+||+ +|
T Consensus 420 ------~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~ 493 (519)
T KOG0293|consen 420 ------HLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPA 493 (519)
T ss_pred ------EEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCC
Confidence 88888 56778889999864 44446654 4 899999999999999999999999999 999999999 44
Q ss_pred CCcEEEEecce
Q 006825 617 LMLRFAYGAFL 627 (630)
Q Consensus 617 ~~~~lAsgs~~ 627 (630)
+...+|+++.+
T Consensus 494 ~p~m~ASasDD 504 (519)
T KOG0293|consen 494 DPEMFASASDD 504 (519)
T ss_pred CHHHhhccCCC
Confidence 45567777655
No 57
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.91 E-value=2.7e-23 Score=205.55 Aligned_cols=258 Identities=14% Similarity=0.122 Sum_probs=222.6
Q ss_pred eeeecCccceeEEEeec------ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC----
Q 006825 333 EMCVGHSPIVQELMRRQ------NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER---- 402 (630)
Q Consensus 333 ~~l~GHs~~V~~Lafs~------~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~---- 402 (630)
.++.||+..|-.|+|+| +|.|+|.|+.-. +-+-.||..+.++. ||.+.|.+..+..+-.+.++++.|=
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pm-lr~g~tgdwigtfe-ghkgavw~~~l~~na~~aasaaadftakv 85 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPM-LRNGDTGDWIGTFE-GHKGAVWSATLNKNATRAASAAADFTAKV 85 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCch-hccCCCCCcEEeee-ccCcceeeeecCchhhhhhhhcccchhhh
Confidence 57899999999999999 799999998887 77899999999999 9999999998888877888877664
Q ss_pred ------CCccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEE
Q 006825 403 ------DTSSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASA 474 (630)
Q Consensus 403 ------dt~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASg 474 (630)
+..-.-.|...|.+++|++|. +++|+.+..+|+||+...+. ...++.+|++.|..+-|....+.|+|+
T Consensus 86 w~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~A----pp~E~~ghtg~Ir~v~wc~eD~~iLSS 161 (334)
T KOG0278|consen 86 WDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKA----PPKEISGHTGGIRTVLWCHEDKCILSS 161 (334)
T ss_pred hhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCC----CchhhcCCCCcceeEEEeccCceEEee
Confidence 111245689999999999998 99999999999999976654 456789999999999999988899999
Q ss_pred eCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEe
Q 006825 475 GEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFA 554 (630)
Q Consensus 475 S~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwd 554 (630)
.+|++||+||.+++..++.|. -...|.++.++++|.+|.++ ..+.| .+|+
T Consensus 162 add~tVRLWD~rTgt~v~sL~------~~s~VtSlEvs~dG~ilTia-~gssV-----------------------~Fwd 211 (334)
T KOG0278|consen 162 ADDKTVRLWDHRTGTEVQSLE------FNSPVTSLEVSQDGRILTIA-YGSSV-----------------------KFWD 211 (334)
T ss_pred ccCCceEEEEeccCcEEEEEe------cCCCCcceeeccCCCEEEEe-cCcee-----------------------EEec
Confidence 999999999999999998863 33578899999999987766 56666 6677
Q ss_pred C-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEE-e-cCCceEEEE-cCCCcEEEEecce
Q 006825 555 L-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIF-S-HSDYDISLV-DRLMLRFAYGAFL 627 (630)
Q Consensus 555 l-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~-~-H~~~V~sVa-s~~~~~lAsgs~~ 627 (630)
. +-.+++.++- .-.|.+.+++|+ ..++.|+.|..++.||..+|+.+..+ + |.++|.||. +|++..+|+|+.+
T Consensus 212 aksf~~lKs~k~-P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSED 288 (334)
T KOG0278|consen 212 AKSFGLLKSYKM-PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSED 288 (334)
T ss_pred cccccceeeccC-ccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCC
Confidence 6 4456666553 345889999999 99999999999999999999999988 4 999999999 9999999999865
No 58
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=5.9e-23 Score=208.37 Aligned_cols=239 Identities=15% Similarity=0.221 Sum_probs=188.6
Q ss_pred eeeecCccceeEEEee---cceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCc----
Q 006825 333 EMCVGHSPIVQELMRR---QNVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTS---- 405 (630)
Q Consensus 333 ~~l~GHs~~V~~Lafs---~~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~---- 405 (630)
..+.||..-|+.++-. |.+.++|.|.|.+ ||.+++|.|+.+.. ||.+.|++|+|++.|.+++++|.|....
T Consensus 142 re~~GHkDGiW~Vaa~~tqpi~gtASADhTA~-iWs~Esg~CL~~Y~-GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~ 219 (481)
T KOG0300|consen 142 RELEGHKDGIWHVAADSTQPICGTASADHTAR-IWSLESGACLATYT-GHTGSVNSIKFHNSGLLLLTASGDETAHIWKA 219 (481)
T ss_pred hhhcccccceeeehhhcCCcceeeccccccee-EEeeccccceeeec-ccccceeeEEeccccceEEEccCCcchHHHHH
Confidence 3456666666666542 3699999999999 99999999999999 9999999999999999999999887211
Q ss_pred -------c---ccCCcce--EEEeecCCCeEEEe---cCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCE
Q 006825 406 -------S---EKGGRRS--SSATDDSQDVSFHG---QERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRY 470 (630)
Q Consensus 406 -------s---~~gh~~~--Vsa~~~s~d~l~Sg---s~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~ 470 (630)
+ ..+|... +-+.+ .......+ +...+|| .++..|+||.+.|.+..|-..|+.
T Consensus 220 av~~~vP~~~a~~~hSsEeE~e~sD-e~~~d~d~~~~sD~~tiR------------vPl~~ltgH~~vV~a~dWL~gg~Q 286 (481)
T KOG0300|consen 220 AVNWEVPSNNAPSDHSSEEEEEHSD-EHNRDTDSSEKSDGHTIR------------VPLMRLTGHRAVVSACDWLAGGQQ 286 (481)
T ss_pred hhcCcCCCCCCCCCCCchhhhhccc-ccccccccccccCCceee------------eeeeeeeccccceEehhhhcCcce
Confidence 1 1222110 00000 00000110 1111233 246789999999999999999999
Q ss_pred EEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCcccccc
Q 006825 471 LASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPE 550 (630)
Q Consensus 471 LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~ 550 (630)
++|+++|++..+||+++++.+..| .||......++-+|..+++++.+.|.+.
T Consensus 287 ~vTaSWDRTAnlwDVEtge~v~~L-----tGHd~ELtHcstHptQrLVvTsSrDtTF----------------------- 338 (481)
T KOG0300|consen 287 MVTASWDRTANLWDVETGEVVNIL-----TGHDSELTHCSTHPTQRLVVTSSRDTTF----------------------- 338 (481)
T ss_pred eeeeeccccceeeeeccCceeccc-----cCcchhccccccCCcceEEEEeccCcee-----------------------
Confidence 999999999999999999998885 8999999999999999999999999999
Q ss_pred EEEeCC--CCceEEeccCCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCC-cEEEEEecCCceEEEE
Q 006825 551 TVFALS--DKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSK-TCLKIFSHSDYDISLV 614 (630)
Q Consensus 551 ~Vwdls--gk~l~tL~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg-~~l~t~~H~~~V~sVa 614 (630)
++|++. -..+..|+||++.|+++.|..+..+++||.|.||||||++.. .++.++.-.++++-|+
T Consensus 339 RLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRva 405 (481)
T KOG0300|consen 339 RLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVA 405 (481)
T ss_pred EeccchhhcceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccCcceeeecCCccceeE
Confidence 677763 356778999999999999999988999999999999999975 5788887777777776
No 59
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.90 E-value=1.1e-22 Score=202.96 Aligned_cols=255 Identities=16% Similarity=0.111 Sum_probs=199.1
Q ss_pred eEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCC
Q 006825 316 KKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTG 392 (630)
Q Consensus 316 ~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG 392 (630)
..+|-.-.|+.| .++.||++.|+++...- .|++||.|.+++ +||+.+|+++.+++ ....|+.|-|+++|
T Consensus 34 ~~vw~s~nGerl-----Gty~GHtGavW~~Did~~s~~liTGSAD~t~k-LWDv~tGk~la~~k--~~~~Vk~~~F~~~g 105 (327)
T KOG0643|consen 34 PTVWYSLNGERL-----GTYDGHTGAVWCCDIDWDSKHLITGSADQTAK-LWDVETGKQLATWK--TNSPVKRVDFSFGG 105 (327)
T ss_pred ceEEEecCCcee-----eeecCCCceEEEEEecCCcceeeeccccceeE-EEEcCCCcEEEEee--cCCeeEEEeeccCC
Confidence 457888889988 99999999999998755 899999999999 99999999999988 46789999999999
Q ss_pred CeEEeecCCC----------CCc-------------cccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCccccee
Q 006825 393 HKERRSSDER----------DTS-------------SEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALY 447 (630)
Q Consensus 393 ~~lasgS~D~----------dt~-------------s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~ 447 (630)
.+++...++. ++. ...-+...++.+-+.+.+ +++|..+|.|.+||+.++..
T Consensus 106 n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~---- 181 (327)
T KOG0643|consen 106 NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKE---- 181 (327)
T ss_pred cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCce----
Confidence 9888776654 110 122333445555555554 89999999999999988642
Q ss_pred eeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCee
Q 006825 448 KCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHL 527 (630)
Q Consensus 448 ~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I 527 (630)
.+...+-|...|+.|+|++|..+++|+|.|.+.++||+.+-+.++++ -...+|.+.+++|-...++.++.....
T Consensus 182 ~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty------~te~PvN~aaisP~~d~VilgGGqeA~ 255 (327)
T KOG0643|consen 182 LVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTY------TTERPVNTAAISPLLDHVILGGGQEAM 255 (327)
T ss_pred eeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEe------eecccccceecccccceEEecCCceee
Confidence 46677889999999999999999999999999999999998888774 345689999999987777766544333
Q ss_pred eeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCC
Q 006825 528 EKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSS 597 (630)
Q Consensus 528 ~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~t 597 (630)
.+...... .+.+ -.+.|++ ..+.+..++||-++|++|+|+|+ +..+||+.||.|||.....
T Consensus 256 dVTTT~~r--------~GKF-EArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 256 DVTTTSTR--------AGKF-EARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred eeeeeccc--------ccch-hhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 22211110 0001 0134443 45677888999999999999999 8899999999999986654
No 60
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=8.3e-23 Score=206.67 Aligned_cols=248 Identities=17% Similarity=0.150 Sum_probs=184.0
Q ss_pred eeeecCccceeEEEeec----ceEeecCCCccEecccCCC-CceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccc
Q 006825 333 EMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSG-GGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSE 407 (630)
Q Consensus 333 ~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~t-G~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~ 407 (630)
+.-.-..+.|.+|+|+| .++.||||++|| +|++.. |....+-...|.++|.+++|+.||.++
T Consensus 21 ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR-~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskV------------ 87 (347)
T KOG0647|consen 21 EVPNPPEDSISALAFSPQADNLLAAGSWDGTVR-IWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKV------------ 87 (347)
T ss_pred ecCCCcccchheeEeccccCceEEecccCCceE-EEEEecCCcccchhhhccCCCeEEEEEccCCceE------------
Confidence 33344567899999999 577999999999 999976 677766666899999999999998665
Q ss_pred cCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCC--EEEEEeCCCcEEEEEC
Q 006825 408 KGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGR--YLASAGEDCVIHVWQV 485 (630)
Q Consensus 408 ~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~--~LASgS~DgtIrVWDl 485 (630)
++|+.|+.+++||+.+++ ++.+..|.++|.++.|-+... .|+|||.|+|||.||.
T Consensus 88 -----------------f~g~~Dk~~k~wDL~S~Q------~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~ 144 (347)
T KOG0647|consen 88 -----------------FSGGCDKQAKLWDLASGQ------VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDT 144 (347)
T ss_pred -----------------EeeccCCceEEEEccCCC------eeeeeecccceeEEEEecCCCcceeEecccccceeeccc
Confidence 667778899999999885 467788999999999988665 8999999999999999
Q ss_pred cCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccc-cc-----------------------c
Q 006825 486 VESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINR-KS-----------------------L 541 (630)
Q Consensus 486 ~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~-~s-----------------------~ 541 (630)
+....+.++. -...++++.. ...+++.+..+..|.++++...... +. .
T Consensus 145 R~~~pv~t~~------LPeRvYa~Dv--~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alG 216 (347)
T KOG0647|consen 145 RSSNPVATLQ------LPERVYAADV--LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALG 216 (347)
T ss_pred CCCCeeeeee------ccceeeehhc--cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEee
Confidence 9877766542 1123333222 2334555556666666655331110 00 0
Q ss_pred ccCccccccEEEeC-CC--CceEEeccCCC---------CEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cC
Q 006825 542 SLDHMVVPETVFAL-SD--KPICSFQGHLD---------DVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HS 607 (630)
Q Consensus 542 s~d~~i~~~~Vwdl-sg--k~l~tL~GHs~---------~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~ 607 (630)
+.++.+ .|..+ .+ +.-.+|+.|.. .|++|+|+|. +.|+|++.||++.+||-...+.|++.+ |.
T Consensus 217 siEGrv---~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~ 293 (347)
T KOG0647|consen 217 SIEGRV---AIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHP 293 (347)
T ss_pred eecceE---EEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCC
Confidence 011111 22223 12 44456777763 4788999999 999999999999999999999999988 99
Q ss_pred CceEEEE-cCCCcEEEEecce
Q 006825 608 DYDISLV-DRLMLRFAYGAFL 627 (630)
Q Consensus 608 ~~V~sVa-s~~~~~lAsgs~~ 627 (630)
.+|+|.. +.++.++|++..+
T Consensus 294 qpItcc~fn~~G~ifaYA~gY 314 (347)
T KOG0647|consen 294 QPITCCSFNRNGSIFAYALGY 314 (347)
T ss_pred CccceeEecCCCCEEEEEeec
Confidence 9999999 8899999988543
No 61
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.2e-22 Score=227.39 Aligned_cols=262 Identities=14% Similarity=0.129 Sum_probs=196.9
Q ss_pred ceeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEEEEeeec---------C-----------CCceeEEE
Q 006825 260 SMSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNEIQ---------E-----------DGTWKKVK 319 (630)
Q Consensus 260 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~~v~e~~---------~-----------dg~~~~l~ 319 (630)
.|.||+||||| |++-+|+.++||.+-.-.++.+.+.. . +....+..
T Consensus 272 ~mKFS~DGKyL--------------AsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 272 AMKFSHDGKYL--------------ASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred EEEeCCCCcee--------------eecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence 48999999999 88899999999998663333222211 0 00001111
Q ss_pred EcCCCce------------EeeecceeeecCccceeEEEeec--ceEeecCCCccEecccCCCCceeEEecCCccCCEEE
Q 006825 320 EVGTGRQ------------LTIEEFEMCVGHSPIVQELMRRQ--NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRT 385 (630)
Q Consensus 320 dv~TG~~------------lt~eef~~l~GHs~~V~~Lafs~--~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~s 385 (630)
...++.+ +.-+.|..|.||+.-|..|.|+. +|.|+|.|+||| ||++...+|++.+. |...|+|
T Consensus 338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVR-LWh~~~~~CL~~F~--HndfVTc 414 (712)
T KOG0283|consen 338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVR-LWHPGRKECLKVFS--HNDFVTC 414 (712)
T ss_pred ccccccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEE-eecCCCcceeeEEe--cCCeeEE
Confidence 1112111 12245788999999999999997 899999999999 99999999999986 9999999
Q ss_pred EEEcC-CCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEE
Q 006825 386 VASSV-TGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKF 464 (630)
Q Consensus 386 VAfSp-dG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaF 464 (630)
|||.| |-+| +++|+-|++||||++...+. .....-...|++|+|
T Consensus 415 VaFnPvDDry-----------------------------FiSGSLD~KvRiWsI~d~~V------v~W~Dl~~lITAvcy 459 (712)
T KOG0283|consen 415 VAFNPVDDRY-----------------------------FISGSLDGKVRLWSISDKKV------VDWNDLRDLITAVCY 459 (712)
T ss_pred EEecccCCCc-----------------------------EeecccccceEEeecCcCee------EeehhhhhhheeEEe
Confidence 99999 3333 57788899999999977653 233334488999999
Q ss_pred ccCCCEEEEEeCCCcEEEEECcCCceeeeeeccc----ccCcccceEEEEECCCC-CEEEEeeCCCeeeeeccccccccc
Q 006825 465 SLDGRYLASAGEDCVIHVWQVVESERKGELLEKQ----EDGHLNMLLLANGSPEP-TSLSPKHLDNHLEKKRRGRSINRK 539 (630)
Q Consensus 465 SpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~----~~gh~~~V~svafSpdg-~~lasgs~Dg~I~i~~~~~~~~~~ 539 (630)
.|||++.+.|+.+|.+++|++...+......... ...|. .|+.+.|.|.. ..++..+.|..|
T Consensus 460 ~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrI------------ 526 (712)
T KOG0283|consen 460 SPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRI------------ 526 (712)
T ss_pred ccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCce------------
Confidence 9999999999999999999998776554432111 12233 79999998753 345666688888
Q ss_pred ccccCccccccEEEeC-CCCceEEeccCCCC--EEEEEEcCC-CeEEEEECCCcEEEEeCCC
Q 006825 540 SLSLDHMVVPETVFAL-SDKPICSFQGHLDD--VLDLSWSKS-QHLLSSSMDKTVRLWHLSS 597 (630)
Q Consensus 540 s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~--V~sLafSPd-~~LaSgS~DgtVrIWDl~t 597 (630)
+|++. +.++++.|+|+... =....|+.| ++|++++.|..|+||++..
T Consensus 527 -----------RI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 527 -----------RIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred -----------EEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 78887 56788889886542 356789889 9999999999999999854
No 62
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=4e-22 Score=211.95 Aligned_cols=248 Identities=15% Similarity=0.119 Sum_probs=208.0
Q ss_pred ccceeEEEeec----c-eEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-----CCcc--
Q 006825 339 SPIVQELMRRQ----N-VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-----DTSS-- 406 (630)
Q Consensus 339 s~~V~~Lafs~----~-laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-----dt~s-- 406 (630)
-..|..|+|+| . .+++| ..+. +++..+-..++++. .+.+-|.++.|-.||++++.|...+ |..+
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S--~rvq-ly~~~~~~~~k~~s-rFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~ 101 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSS--VRVQ-LYSSVTRSVRKTFS-RFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRV 101 (487)
T ss_pred cCcceeEecCCCCCCceEEecc--cEEE-EEecchhhhhhhHH-hhccceeEEEeecCCeEEEccCCcCcEEEeccccHH
Confidence 36799999999 3 44444 3455 78887777777666 7889999999999999999987766 3222
Q ss_pred ----ccCCcceEEEeecCCCe---EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc-CCCEEEEEeCCC
Q 006825 407 ----EKGGRRSSSATDDSQDV---SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASAGEDC 478 (630)
Q Consensus 407 ----~~gh~~~Vsa~~~s~d~---l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp-DG~~LASgS~Dg 478 (630)
...|+..|..+.|++.. +++|++|+.+++||+.+.. ...++.+|++.|.|.+|+| .+.+++|||+||
T Consensus 102 iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~-----v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg 176 (487)
T KOG0310|consen 102 ILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY-----VQAELSGHTDYVRCGDISPANDHIVVTGSYDG 176 (487)
T ss_pred HHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE-----EEEEecCCcceeEeeccccCCCeEEEecCCCc
Confidence 78999999999998766 8999999999999998764 2458999999999999999 466999999999
Q ss_pred cEEEEECcCC-ceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCC-
Q 006825 479 VIHVWQVVES-ERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS- 556 (630)
Q Consensus 479 tIrVWDl~tg-~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdls- 556 (630)
+||+||++.. ..+.+ ..|..+|..+.+-|.|.+|++++. ..+ ++||++
T Consensus 177 ~vrl~DtR~~~~~v~e------lnhg~pVe~vl~lpsgs~iasAgG-n~v-----------------------kVWDl~~ 226 (487)
T KOG0310|consen 177 KVRLWDTRSLTSRVVE------LNHGCPVESVLALPSGSLIASAGG-NSV-----------------------KVWDLTT 226 (487)
T ss_pred eEEEEEeccCCceeEE------ecCCCceeeEEEcCCCCEEEEcCC-CeE-----------------------EEEEecC
Confidence 9999999876 44444 578899999999999999999854 345 899984
Q ss_pred -CCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEecCCceEEEE-cCCCcEEEEec
Q 006825 557 -DKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYDISLV-DRLMLRFAYGA 625 (630)
Q Consensus 557 -gk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~H~~~V~sVa-s~~~~~lAsgs 625 (630)
++.+..+..|...|+||.+..+ ..|+|||.|+.|++||+.+-+.++.+.-.++|.+++ +|....++.|-
T Consensus 227 G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGm 298 (487)
T KOG0310|consen 227 GGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGM 298 (487)
T ss_pred CceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecccceeeEEecCCCceEEEec
Confidence 4566666669999999999998 999999999999999999999999999999999999 88777777663
No 63
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.90 E-value=6.8e-23 Score=208.30 Aligned_cols=271 Identities=15% Similarity=0.136 Sum_probs=219.1
Q ss_pred CceeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecC
Q 006825 259 DSMSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGH 338 (630)
Q Consensus 259 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GH 338 (630)
+.-.|||||+|| .++.-|+...+||.-+|+.-- | |+ ...-..+.=|
T Consensus 217 EcA~FSPDgqyL--------------vsgSvDGFiEVWny~~GKlrK------D-----Lk---------YQAqd~fMMm 262 (508)
T KOG0275|consen 217 ECARFSPDGQYL--------------VSGSVDGFIEVWNYTTGKLRK------D-----LK---------YQAQDNFMMM 262 (508)
T ss_pred hheeeCCCCceE--------------eeccccceeeeehhccchhhh------h-----hh---------hhhhcceeec
Confidence 335899999999 445567789999988885421 1 11 1111334456
Q ss_pred ccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEE
Q 006825 339 SPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSS 415 (630)
Q Consensus 339 s~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vs 415 (630)
..+|.++.|+. .||+|+-|+.|+ +|-+.||.|++++...|++.|.++.||.|+..+
T Consensus 263 d~aVlci~FSRDsEMlAsGsqDGkIK-vWri~tG~ClRrFdrAHtkGvt~l~FSrD~Sqi-------------------- 321 (508)
T KOG0275|consen 263 DDAVLCISFSRDSEMLASGSQDGKIK-VWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQI-------------------- 321 (508)
T ss_pred ccceEEEeecccHHHhhccCcCCcEE-EEEEecchHHHHhhhhhccCeeEEEEccCcchh--------------------
Confidence 78999999987 899999999999 999999999999988999999999999987655
Q ss_pred EeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeee
Q 006825 416 ATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELL 495 (630)
Q Consensus 416 a~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~ 495 (630)
.+++.|.+||+-.++.++ ++.+++||...|+...|.+||.+++|++.||+||||+..+.+|..++.
T Consensus 322 ---------LS~sfD~tvRiHGlKSGK-----~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk 387 (508)
T KOG0275|consen 322 ---------LSASFDQTVRIHGLKSGK-----CLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFK 387 (508)
T ss_pred ---------hcccccceEEEeccccch-----hHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhcc
Confidence 455667789999988775 578899999999999999999999999999999999999999998863
Q ss_pred cccccCcccceEEEEECCC-CCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEecc---CCCCEE
Q 006825 496 EKQEDGHLNMLLLANGSPE-PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQG---HLDDVL 571 (630)
Q Consensus 496 ~~~~~gh~~~V~svafSpd-g~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~G---Hs~~V~ 571 (630)
..+....|..+-.-|. ...++.+-...++ .|-++.|+.+++|.. ..+..-
T Consensus 388 ---~~~~d~~vnsv~~~PKnpeh~iVCNrsntv-----------------------~imn~qGQvVrsfsSGkREgGdFi 441 (508)
T KOG0275|consen 388 ---PLGTDYPVNSVILLPKNPEHFIVCNRSNTV-----------------------YIMNMQGQVVRSFSSGKREGGDFI 441 (508)
T ss_pred ---CCCCcccceeEEEcCCCCceEEEEcCCCeE-----------------------EEEeccceEEeeeccCCccCCceE
Confidence 2345566777777765 5566777677777 677778899998853 234566
Q ss_pred EEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcEEEEe
Q 006825 572 DLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLRFAYG 624 (630)
Q Consensus 572 sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~lAsg 624 (630)
+.+.+|. .++...+.|+.++.|.+.+|++-+++. |...|..++ +|-...+|+=
T Consensus 442 ~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsY 497 (508)
T KOG0275|consen 442 NAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASY 497 (508)
T ss_pred EEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhh
Confidence 7788998 899999999999999999999999998 998888888 6666666543
No 64
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.90 E-value=4.2e-22 Score=206.46 Aligned_cols=245 Identities=19% Similarity=0.260 Sum_probs=203.7
Q ss_pred CCceeEEEEcCCCceEeeecceeeecCccceeEEEeec------ceEeecCCCccEecccCCCCce----eEEecCCccC
Q 006825 312 DGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ------NVEEGNKDSFDLNNNGSSGGGM----KSKKKGSWFK 381 (630)
Q Consensus 312 dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~------~laSgS~D~tvr~vWD~~tG~~----~~~lk~gH~~ 381 (630)
||. .++|+.. |+.. .++.||++.|.++++.- .++++|.|.|++ +|-.+.|+. ++..+ ||.+
T Consensus 124 Dg~-~riWd~~-Gk~~-----~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~-Lw~~~~~~~~~~~~~~~~-GHk~ 194 (423)
T KOG0313|consen 124 DGT-SRIWDLK-GKSI-----KTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLR-LWKWNVGENKVKALKVCR-GHKR 194 (423)
T ss_pred CCe-eEEEecC-CceE-----EEEecCCcceeeeEEEecCCccceEEEecCCceEE-EEEecCchhhhhHHhHhc-cccc
Confidence 444 5677754 6666 78999999999888754 599999999999 998887763 33444 9999
Q ss_pred CEEEEEEcCCCCeEEeecCCC-----C-------------------------------CccccCCcceEEEeecCCCe-E
Q 006825 382 SIRTVASSVTGHKERRSSDER-----D-------------------------------TSSEKGGRRSSSATDDSQDV-S 424 (630)
Q Consensus 382 ~V~sVAfSpdG~~lasgS~D~-----d-------------------------------t~s~~gh~~~Vsa~~~s~d~-l 424 (630)
.|.+|+..++|.++.+||-|. + ...+.||...|.++.+.... +
T Consensus 195 ~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~ 274 (423)
T KOG0313|consen 195 SVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVI 274 (423)
T ss_pred ceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCce
Confidence 999999999999999999876 0 00178999999999998866 9
Q ss_pred EEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCccc
Q 006825 425 FHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLN 504 (630)
Q Consensus 425 ~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~ 504 (630)
++++.|.+|+.||+.++.. +.++. -..+++||.++|..++||+|+.|..|||||-+++.-. +....+.+|.+
T Consensus 275 yS~SwDHTIk~WDletg~~-----~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs--~v~~s~~gH~n 346 (423)
T KOG0313|consen 275 YSVSWDHTIKVWDLETGGL-----KSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGS--VVSQSLIGHKN 346 (423)
T ss_pred EeecccceEEEEEeecccc-----eeeee-cCcceeEeecccccceeeecCCCCceeecCCCCCCCc--eeEEeeecchh
Confidence 9999999999999987753 33444 3457999999999999999999999999999877422 22234689999
Q ss_pred ceEEEEECCCC-CEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CC-CceEEeccCCCCEEEEEEcCCCeE
Q 006825 505 MLLLANGSPEP-TSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SD-KPICSFQGHLDDVLDLSWSKSQHL 581 (630)
Q Consensus 505 ~V~svafSpdg-~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sg-k~l~tL~GHs~~V~sLafSPd~~L 581 (630)
.|.++.|+|.. ..|++++.|+++ ++||+ +. .++..+.+|.+.|.++.|....++
T Consensus 347 wVssvkwsp~~~~~~~S~S~D~t~-----------------------klWDvRS~k~plydI~~h~DKvl~vdW~~~~~I 403 (423)
T KOG0313|consen 347 WVSSVKWSPTNEFQLVSGSYDNTV-----------------------KLWDVRSTKAPLYDIAGHNDKVLSVDWNEGGLI 403 (423)
T ss_pred hhhheecCCCCceEEEEEecCCeE-----------------------EEEEeccCCCcceeeccCCceEEEEeccCCceE
Confidence 99999999984 567889999999 88888 44 499999999999999999887899
Q ss_pred EEEECCCcEEEEeCC
Q 006825 582 LSSSMDKTVRLWHLS 596 (630)
Q Consensus 582 aSgS~DgtVrIWDl~ 596 (630)
+||+.|++|+|+...
T Consensus 404 vSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 404 VSGGADNKLRIFKGS 418 (423)
T ss_pred EeccCcceEEEeccc
Confidence 999999999998654
No 65
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=7.1e-22 Score=216.06 Aligned_cols=245 Identities=17% Similarity=0.201 Sum_probs=211.0
Q ss_pred CCceeEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEE
Q 006825 312 DGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVAS 388 (630)
Q Consensus 312 dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAf 388 (630)
.|.+..||+..+|+.+.+.+|. ...|+++.+.+ +||.|..++++. |||+.+.+...++.++|...|-++||
T Consensus 195 lg~~vylW~~~s~~v~~l~~~~-----~~~vtSv~ws~~G~~LavG~~~g~v~-iwD~~~~k~~~~~~~~h~~rvg~laW 268 (484)
T KOG0305|consen 195 LGQSVYLWSASSGSVTELCSFG-----EELVTSVKWSPDGSHLAVGTSDGTVQ-IWDVKEQKKTRTLRGSHASRVGSLAW 268 (484)
T ss_pred ecceEEEEecCCCceEEeEecC-----CCceEEEEECCCCCEEEEeecCCeEE-EEehhhccccccccCCcCceeEEEec
Confidence 4567899999999987555544 78899999998 899999999999 99999999999999459999999999
Q ss_pred cCCCCeEEeecCCCC------------CccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecc
Q 006825 389 SVTGHKERRSSDERD------------TSSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQA 454 (630)
Q Consensus 389 SpdG~~lasgS~D~d------------t~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~g 454 (630)
. +..+.+|+.+.. .....+|...|+.+.++.++ +++|+.|..+.|||....+ ....+..
T Consensus 269 ~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~-----p~~~~~~ 341 (484)
T KOG0305|consen 269 N--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE-----PKFTFTE 341 (484)
T ss_pred c--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcc-----ccEEEec
Confidence 8 577888888871 11378899999999999999 9999999999999985443 4677899
Q ss_pred cCcCEEEEEEcc-CCCEEEEEe--CCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEe--eCCCeeee
Q 006825 455 HNGSIWSIKFSL-DGRYLASAG--EDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPK--HLDNHLEK 529 (630)
Q Consensus 455 Ht~~V~sVaFSp-DG~~LASgS--~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasg--s~Dg~I~i 529 (630)
|+.+|.+++|+| ...+||+|+ .|+.|++||+.++..+..+ .....|..|.|++..+-|+++ ..+..|
T Consensus 342 H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~v------dtgsQVcsL~Wsk~~kEi~sthG~s~n~i-- 413 (484)
T KOG0305|consen 342 HTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSV------DTGSQVCSLIWSKKYKELLSTHGYSENQI-- 413 (484)
T ss_pred cceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccc------ccCCceeeEEEcCCCCEEEEecCCCCCcE--
Confidence 999999999999 778999974 8999999999999988774 445789999999998766664 333445
Q ss_pred ecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCC
Q 006825 530 KRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK 598 (630)
Q Consensus 530 ~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg 598 (630)
.||.. +-+++..+.||...|..++++|| ..+++|+.|.|+|+|++-..
T Consensus 414 ---------------------~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 414 ---------------------TLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred ---------------------EEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 78887 67889999999999999999999 99999999999999998764
No 66
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.89 E-value=1.2e-21 Score=202.44 Aligned_cols=245 Identities=13% Similarity=0.073 Sum_probs=205.5
Q ss_pred eeEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCC
Q 006825 315 WKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVT 391 (630)
Q Consensus 315 ~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpd 391 (630)
.+.||+..+|+.+ ..+.||...|.+++|+- +||||..++.++ ||.+.+|....++- +--..|-=+.|+|.
T Consensus 87 ~AflW~~~~ge~~-----~eltgHKDSVt~~~FshdgtlLATGdmsG~v~-v~~~stg~~~~~~~-~e~~dieWl~WHp~ 159 (399)
T KOG0296|consen 87 LAFLWDISTGEFA-----GELTGHKDSVTCCSFSHDGTLLATGDMSGKVL-VFKVSTGGEQWKLD-QEVEDIEWLKWHPR 159 (399)
T ss_pred eEEEEEccCCcce-----eEecCCCCceEEEEEccCceEEEecCCCccEE-EEEcccCceEEEee-cccCceEEEEeccc
Confidence 4779999999988 89999999999999997 999999999999 99999999999886 55566767899999
Q ss_pred CCeEEeecCCCC-----------CccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccc---------e---
Q 006825 392 GHKERRSSDERD-----------TSSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTA---------L--- 446 (630)
Q Consensus 392 G~~lasgS~D~d-----------t~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~---------~--- 446 (630)
+..|+.|+.|.. .....||...+++..|.+++ ++++..|++|++|+.+++.... .
T Consensus 160 a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~ 239 (399)
T KOG0296|consen 160 AHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCI 239 (399)
T ss_pred ccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCcc
Confidence 999999999981 12288999999999999999 9999999999999998763210 0
Q ss_pred --------------------------eeeeEec--------ccCcCEEEEEEcc---CCCEEEEEeCCCcEEEEECcCCc
Q 006825 447 --------------------------YKCQEIQ--------AHNGSIWSIKFSL---DGRYLASAGEDCVIHVWQVVESE 489 (630)
Q Consensus 447 --------------------------~~v~tL~--------gHt~~V~sVaFSp---DG~~LASgS~DgtIrVWDl~tg~ 489 (630)
..+..+. .|...+.+|.|.| .=.+.|.|+.||+|-|||+....
T Consensus 240 ~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~ 319 (399)
T KOG0296|consen 240 SLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST 319 (399)
T ss_pred ccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccch
Confidence 0001111 3444555555555 44578999999999999998766
Q ss_pred eeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCC
Q 006825 490 RKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLD 568 (630)
Q Consensus 490 ~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~ 568 (630)
.... -.|...|..+.|-+ ..+|++++.+|+| +.|+. +|+++.++.||..
T Consensus 320 ~R~~------c~he~~V~~l~w~~-t~~l~t~c~~g~v-----------------------~~wDaRtG~l~~~y~GH~~ 369 (399)
T KOG0296|consen 320 LRHI------CEHEDGVTKLKWLN-TDYLLTACANGKV-----------------------RQWDARTGQLKFTYTGHQM 369 (399)
T ss_pred hhee------ccCCCceEEEEEcC-cchheeeccCceE-----------------------EeeeccccceEEEEecCch
Confidence 5444 56888899999998 7889999999999 88887 9999999999999
Q ss_pred CEEEEEEcCC-CeEEEEECCCcEEEEeCC
Q 006825 569 DVLDLSWSKS-QHLLSSSMDKTVRLWHLS 596 (630)
Q Consensus 569 ~V~sLafSPd-~~LaSgS~DgtVrIWDl~ 596 (630)
.|.+++++|+ ++++|+|.|++.+||++.
T Consensus 370 ~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 370 GILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred heeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 9999999999 999999999999999875
No 67
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=8e-22 Score=208.43 Aligned_cols=270 Identities=18% Similarity=0.150 Sum_probs=214.0
Q ss_pred ceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCcee----EE---e---------c-CCccCCEEEEEEcCC
Q 006825 332 FEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMK----SK---K---------K-GSWFKSIRTVASSVT 391 (630)
Q Consensus 332 f~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~----~~---l---------k-~gH~~~V~sVAfSpd 391 (630)
|..+..|.-.|.+++++| ++.++|.|+++. -|++.+|+.. .+ + . .+|.+.|.++|.|+|
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~-kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D 213 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTIL-KWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD 213 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCccee-eeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC
Confidence 788899999999999999 799999999999 9999998843 11 0 0 289999999999999
Q ss_pred CCeEEeecCCC-------CCc----cccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcC
Q 006825 392 GHKERRSSDER-------DTS----SEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGS 458 (630)
Q Consensus 392 G~~lasgS~D~-------dt~----s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~ 458 (630)
|+||++|..|+ ++. .+++|...|.++.|...- +++++.|.+|++|++.... .+.+|.||.+.
T Consensus 214 gkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s-----~vetlyGHqd~ 288 (479)
T KOG0299|consen 214 GKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS-----YVETLYGHQDG 288 (479)
T ss_pred CcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhH-----HHHHHhCCccc
Confidence 99999999988 222 279999999999988654 9999999999999986543 36789999999
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccc
Q 006825 459 IWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINR 538 (630)
Q Consensus 459 V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~ 538 (630)
|..|....-++.+-.|+.|++++||++.... +.+ +.++.+.+-+++|-.+ ..+++|+.+|.|.+|...+..++
T Consensus 289 v~~IdaL~reR~vtVGgrDrT~rlwKi~ees--qli----frg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkpl 361 (479)
T KOG0299|consen 289 VLGIDALSRERCVTVGGRDRTVRLWKIPEES--QLI----FRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPL 361 (479)
T ss_pred eeeechhcccceEEeccccceeEEEeccccc--eee----eeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCce
Confidence 9999998888888888899999999994432 222 5888889999999755 56789999999966665554443
Q ss_pred cccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCC----cEEEEEecCCceEEE
Q 006825 539 KSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK----TCLKIFSHSDYDISL 613 (630)
Q Consensus 539 ~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg----~~l~t~~H~~~V~sV 613 (630)
.+....+.+.+.. .-..+..+|++|+..|. .+++|||.+|.||||.+..+ +++..++-.+.|++|
T Consensus 362 f~~~~AHgv~~~~----------~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl 431 (479)
T KOG0299|consen 362 FTSRLAHGVIPEL----------DPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSL 431 (479)
T ss_pred eEeeccccccCCc----------cccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEE
Confidence 3333333221110 00123358999999999 99999999999999999887 456666688999999
Q ss_pred E-cCCCcEEEEe
Q 006825 614 V-DRLMLRFAYG 624 (630)
Q Consensus 614 a-s~~~~~lAsg 624 (630)
+ ..++..+..|
T Consensus 432 ~f~~sgk~ivag 443 (479)
T KOG0299|consen 432 AFSNSGKRIVAG 443 (479)
T ss_pred EEccCCCEEEEe
Confidence 9 7777755554
No 68
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=3.9e-22 Score=222.60 Aligned_cols=247 Identities=13% Similarity=0.088 Sum_probs=204.6
Q ss_pred eEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCC
Q 006825 316 KKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTG 392 (630)
Q Consensus 316 ~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG 392 (630)
.+|||-+-|..| +.|.+|.+.|+.++|+| ..+||++|.+|+ ||+-.+.+++.++. ||.+.|+.+.|++.-
T Consensus 33 IQlWDYRM~tli-----~rFdeHdGpVRgv~FH~~qplFVSGGDDykIk-VWnYk~rrclftL~-GHlDYVRt~~FHhey 105 (1202)
T KOG0292|consen 33 IQLWDYRMGTLI-----DRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIK-VWNYKTRRCLFTLL-GHLDYVRTVFFHHEY 105 (1202)
T ss_pred eeeehhhhhhHH-----hhhhccCCccceeeecCCCCeEEecCCccEEE-EEecccceehhhhc-cccceeEEeeccCCC
Confidence 469999999998 99999999999999998 799999999999 99999999999999 999999999999999
Q ss_pred CeEEeecCCC-------C----CccccCCcceEEEeecCCC--eEEEecCCcEEEEEeCCCCc-----------------
Q 006825 393 HKERRSSDER-------D----TSSEKGGRRSSSATDDSQD--VSFHGQERVRVRQYGKSCKD----------------- 442 (630)
Q Consensus 393 ~~lasgS~D~-------d----t~s~~gh~~~Vsa~~~s~d--~l~Sgs~Dg~VriWd~~~~e----------------- 442 (630)
.+|.+.|+|. . ...++||.+-|.|..|.+. .+++++-|-+||+||...-.
T Consensus 106 PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~ 185 (1202)
T KOG0292|consen 106 PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQ 185 (1202)
T ss_pred ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccc
Confidence 9999999998 2 2339999999999999984 49999999999999975311
Q ss_pred ----cc---ceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCC
Q 006825 443 ----LT---ALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEP 515 (630)
Q Consensus 443 ----l~---~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg 515 (630)
+- .....+.|.||...|+.++|+|.-.+|+||+.|+.||+|.+..-+.- + .....||.+.|.++-|+|..
T Consensus 186 ~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaW-E--vDtcrgH~nnVssvlfhp~q 262 (1202)
T KOG0292|consen 186 GNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW-E--VDTCRGHYNNVSSVLFHPHQ 262 (1202)
T ss_pred cchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccce-e--ehhhhcccCCcceEEecCcc
Confidence 00 01123678999999999999999999999999999999998754432 2 13358999999999999999
Q ss_pred CEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEE
Q 006825 516 TSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLW 593 (630)
Q Consensus 516 ~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIW 593 (630)
.+|++.+.|++| +||++ ..+.+++|.--.+..+.|+-+|. ++++.| .|+-+-+|
T Consensus 263 ~lIlSnsEDksi-----------------------rVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAg-HDsGm~VF 318 (1202)
T KOG0292|consen 263 DLILSNSEDKSI-----------------------RVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAG-HDSGMIVF 318 (1202)
T ss_pred ceeEecCCCccE-----------------------EEEecccccceeeeeccCCeEEEEEecCCcceeeee-cCCceEEE
Confidence 999999999999 67777 45677777666666777777777 544444 44445555
Q ss_pred eCC
Q 006825 594 HLS 596 (630)
Q Consensus 594 Dl~ 596 (630)
.++
T Consensus 319 kle 321 (1202)
T KOG0292|consen 319 KLE 321 (1202)
T ss_pred EEc
Confidence 554
No 69
>PTZ00420 coronin; Provisional
Probab=99.89 E-value=2.6e-21 Score=218.06 Aligned_cols=215 Identities=17% Similarity=0.147 Sum_probs=168.0
Q ss_pred eecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCC-CCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCc
Q 006825 353 EGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVT-GHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERV 431 (630)
Q Consensus 353 SgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpd-G~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg 431 (630)
.|+.++.++ +|+..+...+..++ +|.+.|.+|+|+|+ +.+| ++|+.|+
T Consensus 49 gGG~~gvI~-L~~~~r~~~v~~L~-gH~~~V~~lafsP~~~~lL-----------------------------ASgS~Dg 97 (568)
T PTZ00420 49 GGGLIGAIR-LENQMRKPPVIKLK-GHTSSILDLQFNPCFSEIL-----------------------------ASGSEDL 97 (568)
T ss_pred CCCceeEEE-eeecCCCceEEEEc-CCCCCEEEEEEcCCCCCEE-----------------------------EEEeCCC
Confidence 456668889 99988877888888 99999999999996 4444 6677888
Q ss_pred EEEEEeCCCCcc--cc-eeeeeEecccCcCEEEEEEccCCCE-EEEEeCCCcEEEEECcCCceeeeeecccccCcccceE
Q 006825 432 RVRQYGKSCKDL--TA-LYKCQEIQAHNGSIWSIKFSLDGRY-LASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLL 507 (630)
Q Consensus 432 ~VriWd~~~~el--~~-~~~v~tL~gHt~~V~sVaFSpDG~~-LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~ 507 (630)
+|++|++..... .. ...+..+.+|...|.+|+|+|++.. |+|++.|++|+|||+.+++....+ .|...|.
T Consensus 98 tIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i------~~~~~V~ 171 (568)
T PTZ00420 98 TIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQI------NMPKKLS 171 (568)
T ss_pred eEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEE------ecCCcEE
Confidence 999999875421 00 1234578999999999999999875 579999999999999988766553 2456799
Q ss_pred EEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEE-----EEcCC-Ce
Q 006825 508 LANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDL-----SWSKS-QH 580 (630)
Q Consensus 508 svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sL-----afSPd-~~ 580 (630)
+++|+|+|.+|++++.|+.| ++|++ +++.+.++.+|.+.+... .|+++ ++
T Consensus 172 SlswspdG~lLat~s~D~~I-----------------------rIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~ 228 (568)
T PTZ00420 172 SLKWNIKGNLLSGTCVGKHM-----------------------HIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNY 228 (568)
T ss_pred EEEECCCCCEEEEEecCCEE-----------------------EEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCE
Confidence 99999999999999999999 88888 778889999999875433 35578 89
Q ss_pred EEEEECCC----cEEEEeCCC-CcEEEEEecC---CceEEEE-cCCCcEEEEecce
Q 006825 581 LLSSSMDK----TVRLWHLSS-KTCLKIFSHS---DYDISLV-DRLMLRFAYGAFL 627 (630)
Q Consensus 581 LaSgS~Dg----tVrIWDl~t-g~~l~t~~H~---~~V~sVa-s~~~~~lAsgs~~ 627 (630)
|+|++.|+ +|+|||++. ++++.++.+. +.+.... .+.+.++++|+.+
T Consensus 229 IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD 284 (568)
T PTZ00420 229 ILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGD 284 (568)
T ss_pred EEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECC
Confidence 99988875 799999995 6788777633 3333333 5557777777443
No 70
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.7e-20 Score=183.35 Aligned_cols=263 Identities=17% Similarity=0.198 Sum_probs=200.4
Q ss_pred eecCccceeEEEeec---ceEeecCCCccEecc------cCCCC--------ceeEEecCCccCCEEEEEEcCCCCeEEe
Q 006825 335 CVGHSPIVQELMRRQ---NVEEGNKDSFDLNNN------GSSGG--------GMKSKKKGSWFKSIRTVASSVTGHKERR 397 (630)
Q Consensus 335 l~GHs~~V~~Lafs~---~laSgS~D~tvr~vW------D~~tG--------~~~~~lk~gH~~~V~sVAfSpdG~~las 397 (630)
+...+..|.+++|.| .-|.||+.+|.| +- |+..+ ..+.+....|.+.|.|+||||+|++|++
T Consensus 28 ~l~dsqairav~fhp~g~lyavgsnskt~r-ic~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliat 106 (350)
T KOG0641|consen 28 ILEDSQAIRAVAFHPAGGLYAVGSNSKTFR-ICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIAT 106 (350)
T ss_pred EecchhheeeEEecCCCceEEeccCCceEE-EEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEe
Confidence 345678899999999 678899999998 54 33221 1233444489999999999999999999
Q ss_pred ecCCC---------CCccccC-------CcceEEEeec---CCCe---EEE-ecCCcEEEEEeCCCCcccceeeeeEecc
Q 006825 398 SSDER---------DTSSEKG-------GRRSSSATDD---SQDV---SFH-GQERVRVRQYGKSCKDLTALYKCQEIQA 454 (630)
Q Consensus 398 gS~D~---------dt~s~~g-------h~~~Vsa~~~---s~d~---l~S-gs~Dg~VriWd~~~~el~~~~~v~tL~g 454 (630)
|+.|+ ++....| |...|..++| ...+ +++ |..|.+|.+-|...++ ..+.+.|
T Consensus 107 gsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~-----~~~a~sg 181 (350)
T KOG0641|consen 107 GSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ-----GFHALSG 181 (350)
T ss_pred cCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC-----cceeecC
Confidence 99998 3433333 4455554444 3333 444 4568888888876664 3678999
Q ss_pred cCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeeccc-ccC-cccceEEEEECCCCCEEEEeeCCCeeeeecc
Q 006825 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQ-EDG-HLNMLLLANGSPEPTSLSPKHLDNHLEKKRR 532 (630)
Q Consensus 455 Ht~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~-~~g-h~~~V~svafSpdg~~lasgs~Dg~I~i~~~ 532 (630)
|++.|.++ ++-+|-++++|++|++||.||++-..++.++-... ..| ....|..++..|.|+++++|-.|...
T Consensus 182 htghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc----- 255 (350)
T KOG0641|consen 182 HTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSC----- 255 (350)
T ss_pred CcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCce-----
Confidence 99999988 45589999999999999999999888887763110 011 13568899999999999999988887
Q ss_pred cccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCC---c-EEEEEe-
Q 006825 533 GRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK---T-CLKIFS- 605 (630)
Q Consensus 533 ~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg---~-~l~t~~- 605 (630)
.++++ .+++++.|..|+..|.++.|+|. .||+++|.|..||+-|+.-. + .+....
T Consensus 256 ------------------~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~e 317 (350)
T KOG0641|consen 256 ------------------MLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAE 317 (350)
T ss_pred ------------------EEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEe
Confidence 78888 67899999999999999999999 99999999999999998632 2 223333
Q ss_pred cCCceEEEE-cCCCcEEEEecce
Q 006825 606 HSDYDISLV-DRLMLRFAYGAFL 627 (630)
Q Consensus 606 H~~~V~sVa-s~~~~~lAsgs~~ 627 (630)
|.+.+..+. .|..+.+.+.+.+
T Consensus 318 hkdk~i~~rwh~~d~sfisssad 340 (350)
T KOG0641|consen 318 HKDKAIQCRWHPQDFSFISSSAD 340 (350)
T ss_pred ccCceEEEEecCccceeeeccCc
Confidence 998887777 8888887776644
No 71
>PTZ00421 coronin; Provisional
Probab=99.89 E-value=6.5e-21 Score=212.89 Aligned_cols=217 Identities=18% Similarity=0.188 Sum_probs=162.9
Q ss_pred ceEeecCCCccEecccCCCCcee----------E---EecCCccCCEEEEEEcC-CCCeEEeecCCCCCccccCCcceEE
Q 006825 350 NVEEGNKDSFDLNNNGSSGGGMK----------S---KKKGSWFKSIRTVASSV-TGHKERRSSDERDTSSEKGGRRSSS 415 (630)
Q Consensus 350 ~laSgS~D~tvr~vWD~~tG~~~----------~---~lk~gH~~~V~sVAfSp-dG~~lasgS~D~dt~s~~gh~~~Vs 415 (630)
.+++++.+..+. .|+...|..+ . .+. ||.+.|.+|+|+| ++++|
T Consensus 34 ~~~~~n~~~~a~-~w~~~gg~~v~~~~~~G~~~~~~~~l~-GH~~~V~~v~fsP~d~~~L-------------------- 91 (493)
T PTZ00421 34 NTIACNDRFIAV-PWQQLGSTAVLKHTDYGKLASNPPILL-GQEGPIIDVAFNPFDPQKL-------------------- 91 (493)
T ss_pred CcEeECCceEEE-EEecCCceEEeeccccccCCCCCceEe-CCCCCEEEEEEcCCCCCEE--------------------
Confidence 455666666666 6665443322 1 344 7888888888887 55544
Q ss_pred EeecCCCeEEEecCCcEEEEEeCCCCcccc--eeeeeEecccCcCEEEEEEccCC-CEEEEEeCCCcEEEEECcCCceee
Q 006825 416 ATDDSQDVSFHGQERVRVRQYGKSCKDLTA--LYKCQEIQAHNGSIWSIKFSLDG-RYLASAGEDCVIHVWQVVESERKG 492 (630)
Q Consensus 416 a~~~s~d~l~Sgs~Dg~VriWd~~~~el~~--~~~v~tL~gHt~~V~sVaFSpDG-~~LASgS~DgtIrVWDl~tg~~~~ 492 (630)
++++.|++|++|++....+.. ...+..|.+|...|.+|+|+|++ ++|+||+.|++|+|||+.+++...
T Consensus 92 ---------aSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~ 162 (493)
T PTZ00421 92 ---------FTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVE 162 (493)
T ss_pred ---------EEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEE
Confidence 667788899999987643211 12467899999999999999975 799999999999999999988776
Q ss_pred eeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCC-E
Q 006825 493 ELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDD-V 570 (630)
Q Consensus 493 ~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~-V 570 (630)
.+ .+|...|.+++|+|++.+|++++.|++| ++|++ +++.+.++.+|... +
T Consensus 163 ~l-----~~h~~~V~sla~spdG~lLatgs~Dg~I-----------------------rIwD~rsg~~v~tl~~H~~~~~ 214 (493)
T PTZ00421 163 VI-----KCHSDQITSLEWNLDGSLLCTTSKDKKL-----------------------NIIDPRDGTIVSSVEAHASAKS 214 (493)
T ss_pred EE-----cCCCCceEEEEEECCCCEEEEecCCCEE-----------------------EEEECCCCcEEEEEecCCCCcc
Confidence 64 7899999999999999999999999999 88888 78888999999875 4
Q ss_pred EEEEEcCC-CeEEEEE----CCCcEEEEeCCCCc-EEEEEe-cC-CceEEEE-cCCCcEEEEec
Q 006825 571 LDLSWSKS-QHLLSSS----MDKTVRLWHLSSKT-CLKIFS-HS-DYDISLV-DRLMLRFAYGA 625 (630)
Q Consensus 571 ~sLafSPd-~~LaSgS----~DgtVrIWDl~tg~-~l~t~~-H~-~~V~sVa-s~~~~~lAsgs 625 (630)
..+.|.++ .+|++++ .|++|+|||+++.. ++..+. +. ..+.... ++++..+++++
T Consensus 215 ~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lgg 278 (493)
T PTZ00421 215 QRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGS 278 (493)
T ss_pred eEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEE
Confidence 57889988 7777654 48999999998754 555544 33 3344333 66666666554
No 72
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=9.5e-22 Score=213.43 Aligned_cols=204 Identities=16% Similarity=0.128 Sum_probs=170.7
Q ss_pred EEEEcCCCceEeeecceeeecCccceeEEEeecceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEE
Q 006825 317 KVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQNVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKER 396 (630)
Q Consensus 317 ~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~la 396 (630)
.+|+-.|..++ ..|+...-.-..-.-+++...+++||+|..|| |++.+|++.++.+. .|.+.|+++|.+|.-.++.
T Consensus 38 ~IWnyetqtmV--ksfeV~~~PvRa~kfiaRknWiv~GsDD~~Ir-Vfnynt~ekV~~Fe-AH~DyIR~iavHPt~P~vL 113 (794)
T KOG0276|consen 38 QIWNYETQTMV--KSFEVSEVPVRAAKFIARKNWIVTGSDDMQIR-VFNYNTGEKVKTFE-AHSDYIRSIAVHPTLPYVL 113 (794)
T ss_pred EEEecccceee--eeeeecccchhhheeeeccceEEEecCCceEE-EEecccceeeEEee-ccccceeeeeecCCCCeEE
Confidence 35665554444 22332222222233345556899999999999 99999999999999 9999999999999999999
Q ss_pred eecCCC------------CCccccCCcceEEEeecCCCe---EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEE
Q 006825 397 RSSDER------------DTSSEKGGRRSSSATDDSQDV---SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWS 461 (630)
Q Consensus 397 sgS~D~------------dt~s~~gh~~~Vsa~~~s~d~---l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~s 461 (630)
++|+|- -...+.||.+-|..++|.|.- +++++-|++|++|.+.... +.-+|+||...|+|
T Consensus 114 tsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~-----~nfTl~gHekGVN~ 188 (794)
T KOG0276|consen 114 TSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPH-----PNFTLEGHEKGVNC 188 (794)
T ss_pred ecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCC-----CceeeeccccCcce
Confidence 999997 234499999999999999865 9999999999999886553 56789999999999
Q ss_pred EEEccCC--CEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccc
Q 006825 462 IKFSLDG--RYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGR 534 (630)
Q Consensus 462 VaFSpDG--~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~ 534 (630)
|.|-+-| .+|+||+.|.+|||||.++..|+++| .||...|..+.|+|.-.+|++|+.||++++|....
T Consensus 189 Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TL-----eGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~T 258 (794)
T KOG0276|consen 189 VDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTL-----EGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKT 258 (794)
T ss_pred EEeccCCCcceEEecCCCceEEEeecchHHHHHHh-----hcccccceEEEecCCCcEEEEecCCccEEEecCcc
Confidence 9998844 69999999999999999999999995 99999999999999999999999999996665443
No 73
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.88 E-value=2.8e-21 Score=212.14 Aligned_cols=247 Identities=14% Similarity=0.134 Sum_probs=210.9
Q ss_pred EEeeecCCCceeEEEEcCCCceEeeecceeeecCccceeE-EEeec----ceEeecCCCccEecccCCCCceeEEecCCc
Q 006825 305 VVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQE-LMRRQ----NVEEGNKDSFDLNNNGSSGGGMKSKKKGSW 379 (630)
Q Consensus 305 ~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~-Lafs~----~laSgS~D~tvr~vWD~~tG~~~~~lk~gH 379 (630)
.+...+.||+ .++|+...++.+ +.+.+.||.+.|.. +++-+ .|+.|++|.++. +|...++..+.+|+ ||
T Consensus 27 ~i~s~sRd~t-~~vw~~~~~~~l---~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~-v~~~~~~~P~~~Lk-gH 100 (745)
T KOG0301|consen 27 CIISGSRDGT-VKVWAKKGKQYL---ETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTII-VFKLSQAEPLYTLK-GH 100 (745)
T ss_pred EEeecCCCCc-eeeeeccCcccc---cceecccCcceeeccceeccccCcceEeecccceEE-EEecCCCCchhhhh-cc
Confidence 3445566777 779998877777 44567788888776 77765 599999999999 99999999999999 99
Q ss_pred cCCEEEEEEcCCCCeEEeecCCCC---------CccccCCcceEEEeecCCCe-EEEecCCcEEEEEeCCCCcccceeee
Q 006825 380 FKSIRTVASSVTGHKERRSSDERD---------TSSEKGGRRSSSATDDSQDV-SFHGQERVRVRQYGKSCKDLTALYKC 449 (630)
Q Consensus 380 ~~~V~sVAfSpdG~~lasgS~D~d---------t~s~~gh~~~Vsa~~~s~d~-l~Sgs~Dg~VriWd~~~~el~~~~~v 449 (630)
...|.+++.--++. +++||-|.. ...+.+|+..|+++..-+.. +++|+.|.+|++|.-.+ ++
T Consensus 101 ~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~~~-------~l 172 (745)
T KOG0301|consen 101 KSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELVYSLQGHTASVWAVASLPENTYVTGSADKTIKLWKGGT-------LL 172 (745)
T ss_pred ccceeeeecCCcCc-eEecccccceEEecchhhhcccCCcchheeeeeecCCCcEEeccCcceeeeccCCc-------hh
Confidence 99999988877877 899999972 12389999999999988887 99999999999997522 57
Q ss_pred eEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeee
Q 006825 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529 (630)
Q Consensus 450 ~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i 529 (630)
++|.||++.|+.+++-+++. |+|++.||.||+|++ +|+++.++ .+|...|+++...+.+..+++++.|+++
T Consensus 173 ~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~l~~~-----~ghtn~vYsis~~~~~~~Ivs~gEDrtl-- 243 (745)
T KOG0301|consen 173 KTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEVLLEM-----HGHTNFVYSISMALSDGLIVSTGEDRTL-- 243 (745)
T ss_pred hhhccchhheeeeEEecCCC-eEeecCCceEEEEec-cCceeeee-----eccceEEEEEEecCCCCeEEEecCCceE--
Confidence 89999999999999998765 889999999999999 78888884 8999999999988888899999999999
Q ss_pred ecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCCCeEEEEECCCcEEEEeCC
Q 006825 530 KRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLS 596 (630)
Q Consensus 530 ~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~ 596 (630)
++|... ++.+.+.-.+-.|+++.+-+++-+++|+.||.||||-..
T Consensus 244 ---------------------riW~~~-e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 244 ---------------------RIWKKD-ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVD 288 (745)
T ss_pred ---------------------EEeecC-ceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEec
Confidence 566654 677777766668999999888899999999999999775
No 74
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.6e-21 Score=193.59 Aligned_cols=225 Identities=17% Similarity=0.193 Sum_probs=182.0
Q ss_pred cceeEEEeec----ceEeecCCCccEecccCCC-CceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceE
Q 006825 340 PIVQELMRRQ----NVEEGNKDSFDLNNNGSSG-GGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSS 414 (630)
Q Consensus 340 ~~V~~Lafs~----~laSgS~D~tvr~vWD~~t-G~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~V 414 (630)
+.+-.+++++ .+++++.|+++| +||..- -..++++| .|.+.|.+|.+.+.-.
T Consensus 61 D~LfdV~Wse~~e~~~~~a~GDGSLr-l~d~~~~s~Pi~~~k-EH~~EV~Svdwn~~~r--------------------- 117 (311)
T KOG0277|consen 61 DGLFDVAWSENHENQVIAASGDGSLR-LFDLTMPSKPIHKFK-EHKREVYSVDWNTVRR--------------------- 117 (311)
T ss_pred cceeEeeecCCCcceEEEEecCceEE-EeccCCCCcchhHHH-hhhhheEEeccccccc---------------------
Confidence 4456677777 688999999999 999532 45788888 8999999998887422
Q ss_pred EEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc-CCCEEEEEeCCCcEEEEECcCCceeee
Q 006825 415 SATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVESERKGE 493 (630)
Q Consensus 415 sa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp-DG~~LASgS~DgtIrVWDl~tg~~~~~ 493 (630)
..+++++.|++|++|+..-+. .++++.||...|+..+|+| .+++++++|.|+++++||++.......
T Consensus 118 -------~~~ltsSWD~TiKLW~~~r~~-----Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~ 185 (311)
T KOG0277|consen 118 -------RIFLTSSWDGTIKLWDPNRPN-----SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS 185 (311)
T ss_pred -------eeEEeeccCCceEeecCCCCc-----ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE
Confidence 224667999999999976553 5889999999999999999 789999999999999999976533333
Q ss_pred eecccccCcccceEEEEECC-CCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC--CCCceEEeccCCCCE
Q 006825 494 LLEKQEDGHLNMLLLANGSP-EPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL--SDKPICSFQGHLDDV 570 (630)
Q Consensus 494 l~~~~~~gh~~~V~svafSp-dg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl--sgk~l~tL~GHs~~V 570 (630)
+ ..|...+.++.|+. +..++++++.|+.| +.||+ -..++.+|.||.-.|
T Consensus 186 i-----~ah~~Eil~cdw~ky~~~vl~Tg~vd~~v-----------------------r~wDir~~r~pl~eL~gh~~AV 237 (311)
T KOG0277|consen 186 I-----EAHNSEILCCDWSKYNHNVLATGGVDNLV-----------------------RGWDIRNLRTPLFELNGHGLAV 237 (311)
T ss_pred E-----EeccceeEeecccccCCcEEEecCCCceE-----------------------EEEehhhccccceeecCCceEE
Confidence 2 67888899999986 47889999999999 77777 357899999999999
Q ss_pred EEEEEcCC--CeEEEEECCCcEEEEeCCC-CcEEEEEe-cCCceEEEE--cCCCcEEEEecce
Q 006825 571 LDLSWSKS--QHLLSSSMDKTVRLWHLSS-KTCLKIFS-HSDYDISLV--DRLMLRFAYGAFL 627 (630)
Q Consensus 571 ~sLafSPd--~~LaSgS~DgtVrIWDl~t-g~~l~t~~-H~~~V~sVa--s~~~~~lAsgs~~ 627 (630)
..|+|||. .+|+|+|.|-|+||||... ..++.++. |+..|..+. .-....+|+-+.+
T Consensus 238 Rkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWD 300 (311)
T KOG0277|consen 238 RKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWD 300 (311)
T ss_pred EEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccc
Confidence 99999998 8999999999999999984 46777777 888887777 2244455554443
No 75
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=4.6e-21 Score=188.59 Aligned_cols=239 Identities=15% Similarity=0.130 Sum_probs=201.9
Q ss_pred ceeEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcC
Q 006825 314 TWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSV 390 (630)
Q Consensus 314 ~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSp 390 (630)
.+.+||.+-.|..| ++..||..-|..++.+. .+++++.|+.+. +||++||+..++++ ||...|++|+|..
T Consensus 39 rtvrLWNp~rg~li-----ktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~-vwDV~TGkv~Rr~r-gH~aqVNtV~fNe 111 (307)
T KOG0316|consen 39 RTVRLWNPLRGALI-----KTYSGHGHEVLDAALSSDNSKFASCGGDKAVQ-VWDVNTGKVDRRFR-GHLAQVNTVRFNE 111 (307)
T ss_pred ceEEeeccccccee-----eeecCCCceeeeccccccccccccCCCCceEE-EEEcccCeeeeecc-cccceeeEEEecC
Confidence 46899999999999 99999999999988876 899999999999 99999999999999 9999999999999
Q ss_pred CCCeEEeecCCCC-------------CccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCc
Q 006825 391 TGHKERRSSDERD-------------TSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNG 457 (630)
Q Consensus 391 dG~~lasgS~D~d-------------t~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~ 457 (630)
+...+++|+.|.. ...+..-...|..+.....-+++|+.||++|.||+..+.+.. .+.| .
T Consensus 112 esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~s-----Dy~g--~ 184 (307)
T KOG0316|consen 112 ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSS-----DYFG--H 184 (307)
T ss_pred cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcEEEEEeecceeeh-----hhcC--C
Confidence 9999999999971 112455566788888888889999999999999998775422 2233 4
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceE--EEEECCCCCEEEEeeCCCeeeeeccccc
Q 006825 458 SIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLL--LANGSPEPTSLSPKHLDNHLEKKRRGRS 535 (630)
Q Consensus 458 ~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~--svafSpdg~~lasgs~Dg~I~i~~~~~~ 535 (630)
+|+++.|++||+.+..++.|.+||+.|-.+|+.++. +.||.+.-+ ..++......+++|+.||.+
T Consensus 185 pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~s-----YkGhkn~eykldc~l~qsdthV~sgSEDG~V-------- 251 (307)
T KOG0316|consen 185 PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKS-----YKGHKNMEYKLDCCLNQSDTHVFSGSEDGKV-------- 251 (307)
T ss_pred cceeEEecCCCCEEEEeeccceeeecccchhHHHHH-----hcccccceeeeeeeecccceeEEeccCCceE--------
Confidence 799999999999999999999999999999998877 588877655 44566678899999999999
Q ss_pred ccccccccCccccccEEEeC-CCCceEEeccCCCC-EEEEEEcCC-CeEEEEECCCcEEEEeC
Q 006825 536 INRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDD-VLDLSWSKS-QHLLSSSMDKTVRLWHL 595 (630)
Q Consensus 536 ~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~-V~sLafSPd-~~LaSgS~DgtVrIWDl 595 (630)
.+|++ .+..+..+..|... |.+|+++|. ..|+++. ++.+.+|--
T Consensus 252 ---------------y~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~-~~~~~~~~~ 298 (307)
T KOG0316|consen 252 ---------------YFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITAT-GHGDLFWYQ 298 (307)
T ss_pred ---------------EEEEeccceeeeeeccCCceeEEeeecccCccceeEec-CCceeceee
Confidence 88888 77788888888877 899999998 5555554 455667753
No 76
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.88 E-value=7.9e-22 Score=209.45 Aligned_cols=255 Identities=15% Similarity=0.170 Sum_probs=203.8
Q ss_pred CCcEEEEeeecCCCceeEEEEcCC-CceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEe
Q 006825 300 NGKEFVVNEIQEDGTWKKVKEVGT-GRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKK 375 (630)
Q Consensus 300 dG~~~~v~e~~~dg~~~~l~dv~T-G~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~l 375 (630)
.|+.|+ ..+.|+. ..||++-. +++| .++.||+..|..++|++ .+.|+|.|++++ +||++||+++.++
T Consensus 226 ~~hLlL--S~gmD~~-vklW~vy~~~~~l-----rtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lK-lwDtETG~~~~~f 296 (503)
T KOG0282|consen 226 KGHLLL--SGGMDGL-VKLWNVYDDRRCL-----RTFKGHRKPVRDASFNNCGTSFLSASFDRFLK-LWDTETGQVLSRF 296 (503)
T ss_pred eeeEEE--ecCCCce-EEEEEEecCccee-----hhhhcchhhhhhhhccccCCeeeeeecceeee-eeccccceEEEEE
Confidence 555454 3444665 67999975 8888 99999999999999999 788999999999 9999999999988
Q ss_pred cCCccCCEEEEEEcCCC-CeEEeecCCC-----CCcc------ccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCC
Q 006825 376 KGSWFKSIRTVASSVTG-HKERRSSDER-----DTSS------EKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCK 441 (630)
Q Consensus 376 k~gH~~~V~sVAfSpdG-~~lasgS~D~-----dt~s------~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~ 441 (630)
..+ ..+.+|.|.||+ +.+..|..|+ |... -..|-..|..+.|-..+ +++.++|+.|++|+....
T Consensus 297 ~~~--~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~ 374 (503)
T KOG0282|consen 297 HLD--KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIP 374 (503)
T ss_pred ecC--CCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCC
Confidence 754 347789999998 5666666665 3222 34467778888888777 899999999999998765
Q ss_pred cccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCccc--ceEEEEECCCCCEEE
Q 006825 442 DLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLN--MLLLANGSPEPTSLS 519 (630)
Q Consensus 442 el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~--~V~svafSpdg~~la 519 (630)
-.. . ..+.-+....-+|..+|++.+++.-+.|..|-|+.+........ ...+.||.. .-..+.|+|||.+|+
T Consensus 375 v~i--k--~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nk--kK~feGh~vaGys~~v~fSpDG~~l~ 448 (503)
T KOG0282|consen 375 VPI--K--NIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNK--KKRFEGHSVAGYSCQVDFSPDGRTLC 448 (503)
T ss_pred ccc--h--hhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCH--hhhhcceeccCceeeEEEcCCCCeEE
Confidence 321 1 22333444577899999999999999999999999754433221 233678864 345789999999999
Q ss_pred EeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC--CeEEEEECCCcEEEEe
Q 006825 520 PKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWH 594 (630)
Q Consensus 520 sgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd--~~LaSgS~DgtVrIWD 594 (630)
+|..+|.+ .+|+. +-+.+..+++|.+.+..+.|+|. ..+||++.||.|+|||
T Consensus 449 SGdsdG~v-----------------------~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 449 SGDSDGKV-----------------------NFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred eecCCccE-----------------------EEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 99999999 77777 67889999999999999999997 8999999999999996
No 77
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.88 E-value=6.5e-23 Score=208.43 Aligned_cols=185 Identities=21% Similarity=0.293 Sum_probs=160.2
Q ss_pred EecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccce---eeee
Q 006825 374 KKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTAL---YKCQ 450 (630)
Q Consensus 374 ~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~---~~v~ 450 (630)
..|.|....+.|..|||||+||+ +|+.||-|-+|+..++++..- ....
T Consensus 207 ~IKFg~KSh~EcA~FSPDgqyLv-----------------------------sgSvDGFiEVWny~~GKlrKDLkYQAqd 257 (508)
T KOG0275|consen 207 SIKFGQKSHVECARFSPDGQYLV-----------------------------SGSVDGFIEVWNYTTGKLRKDLKYQAQD 257 (508)
T ss_pred heecccccchhheeeCCCCceEe-----------------------------eccccceeeeehhccchhhhhhhhhhhc
Confidence 34457777888888999888885 456677899999887765421 1123
Q ss_pred EecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeee
Q 006825 451 EIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKK 530 (630)
Q Consensus 451 tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~ 530 (630)
.|.-|..+|.||.|+.|...||||+.||.||||.+.+|.|++.+ ...|...|.++.|+.|+..+++++.|.++
T Consensus 258 ~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrF----drAHtkGvt~l~FSrD~SqiLS~sfD~tv--- 330 (508)
T KOG0275|consen 258 NFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRF----DRAHTKGVTCLSFSRDNSQILSASFDQTV--- 330 (508)
T ss_pred ceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHh----hhhhccCeeEEEEccCcchhhcccccceE---
Confidence 45668999999999999999999999999999999999999987 47999999999999999999999999999
Q ss_pred cccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe---
Q 006825 531 RRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS--- 605 (630)
Q Consensus 531 ~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~--- 605 (630)
++..+ +|++++.|.||+..|+...|.++ .+++++|.||+|++|+.++.+|+.+|+
T Consensus 331 --------------------RiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~ 390 (508)
T KOG0275|consen 331 --------------------RIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLG 390 (508)
T ss_pred --------------------EEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCC
Confidence 77777 89999999999999999999999 999999999999999999999999997
Q ss_pred cCCceEEEE
Q 006825 606 HSDYDISLV 614 (630)
Q Consensus 606 H~~~V~sVa 614 (630)
....|.+|.
T Consensus 391 ~d~~vnsv~ 399 (508)
T KOG0275|consen 391 TDYPVNSVI 399 (508)
T ss_pred CcccceeEE
Confidence 455677766
No 78
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=6.2e-22 Score=215.90 Aligned_cols=221 Identities=17% Similarity=0.240 Sum_probs=184.3
Q ss_pred ceEeecCCCccEecccCCCCc------eeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCe
Q 006825 350 NVEEGNKDSFDLNNNGSSGGG------MKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDV 423 (630)
Q Consensus 350 ~laSgS~D~tvr~vWD~~tG~------~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~ 423 (630)
+|.||+.|+++| +|++..-. .+.++. .|...|+.++.--+|+.
T Consensus 39 yLfTgGRDg~i~-~W~~~~d~~~~s~~~~asme-~HsDWVNDiiL~~~~~t----------------------------- 87 (735)
T KOG0308|consen 39 YLFTGGRDGIIR-LWSVTQDSNEPSTPYIASME-HHSDWVNDIILCGNGKT----------------------------- 87 (735)
T ss_pred eEEecCCCceEE-EeccccccCCcccchhhhhh-hhHhHHhhHHhhcCCCc-----------------------------
Confidence 589999999999 99875422 355566 67777777666655543
Q ss_pred EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEE-ccCCCEEEEEeCCCcEEEEECcCCce--eee---eecc
Q 006825 424 SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKF-SLDGRYLASAGEDCVIHVWQVVESER--KGE---LLEK 497 (630)
Q Consensus 424 l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaF-SpDG~~LASgS~DgtIrVWDl~tg~~--~~~---l~~~ 497 (630)
+++++.|.+|++|+..... .+|..+|..|++.|.||++ -++..++||||.|+.|.|||++++.. +.. +...
T Consensus 88 lIS~SsDtTVK~W~~~~~~---~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~ 164 (735)
T KOG0308|consen 88 LISASSDTTVKVWNAHKDN---TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVN 164 (735)
T ss_pred eEEecCCceEEEeecccCc---chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccc
Confidence 4677788899999986442 3578899999999999999 78999999999999999999998743 111 1111
Q ss_pred cc-cCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEE
Q 006825 498 QE-DGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSW 575 (630)
Q Consensus 498 ~~-~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLaf 575 (630)
.. .|+...|++++..+.|..|++|+..+.+ ++|+. +++.+..|.||++-|.+|..
T Consensus 165 sl~sG~k~siYSLA~N~t~t~ivsGgtek~l-----------------------r~wDprt~~kimkLrGHTdNVr~ll~ 221 (735)
T KOG0308|consen 165 SLGSGPKDSIYSLAMNQTGTIIVSGGTEKDL-----------------------RLWDPRTCKKIMKLRGHTDNVRVLLV 221 (735)
T ss_pred cCCCCCccceeeeecCCcceEEEecCcccce-----------------------EEeccccccceeeeeccccceEEEEE
Confidence 12 3888999999999999999999999998 88888 88899999999999999999
Q ss_pred cCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcEEEEecce
Q 006825 576 SKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLRFAYGAFL 627 (630)
Q Consensus 576 SPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~lAsgs~~ 627 (630)
++| ..++|+|.||+|||||+...+|+.+|. |...||++. ++....+.+|+..
T Consensus 222 ~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd 276 (735)
T KOG0308|consen 222 NDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRD 276 (735)
T ss_pred cCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCC
Confidence 999 899999999999999999999999999 999999999 8777777777644
No 79
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=9.4e-22 Score=195.19 Aligned_cols=215 Identities=18% Similarity=0.189 Sum_probs=180.2
Q ss_pred CCceeEEEEcC-CCceEeeecceeeecCccceeEEEeec----ceEeecCCCccEecccCCCCceeEEecCCccCCEEEE
Q 006825 312 DGTWKKVKEVG-TGRQLTIEEFEMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTV 386 (630)
Q Consensus 312 dg~~~~l~dv~-TG~~lt~eef~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sV 386 (630)
||. .+|||.. ...+| ..+..|..-|.++-+.+ .++++|+|+||+ +|+...++.+.+++ ||...|..+
T Consensus 82 DGS-Lrl~d~~~~s~Pi-----~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiK-LW~~~r~~Sv~Tf~-gh~~~Iy~a 153 (311)
T KOG0277|consen 82 DGS-LRLFDLTMPSKPI-----HKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIK-LWDPNRPNSVQTFN-GHNSCIYQA 153 (311)
T ss_pred Cce-EEEeccCCCCcch-----hHHHhhhhheEEeccccccceeEEeeccCCceE-eecCCCCcceEeec-CCccEEEEE
Confidence 565 4577743 23344 88899999999998877 677889999999 99999999999999 999999999
Q ss_pred EEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc
Q 006825 387 ASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL 466 (630)
Q Consensus 387 AfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp 466 (630)
+|+|. .++.+++++.|+++++||++... ..+.+..|...|.|+.|+.
T Consensus 154 ~~sp~----------------------------~~nlfas~Sgd~~l~lwdvr~~g-----k~~~i~ah~~Eil~cdw~k 200 (311)
T KOG0277|consen 154 AFSPH----------------------------IPNLFASASGDGTLRLWDVRSPG-----KFMSIEAHNSEILCCDWSK 200 (311)
T ss_pred ecCCC----------------------------CCCeEEEccCCceEEEEEecCCC-----ceeEEEeccceeEeecccc
Confidence 99994 34557888999999999986542 2344899999999999998
Q ss_pred -CCCEEEEEeCCCcEEEEECcCCc-eeeeeecccccCcccceEEEEECCC-CCEEEEeeCCCeeeeeccccccccccccc
Q 006825 467 -DGRYLASAGEDCVIHVWQVVESE-RKGELLEKQEDGHLNMLLLANGSPE-PTSLSPKHLDNHLEKKRRGRSINRKSLSL 543 (630)
Q Consensus 467 -DG~~LASgS~DgtIrVWDl~tg~-~~~~l~~~~~~gh~~~V~svafSpd-g~~lasgs~Dg~I~i~~~~~~~~~~s~s~ 543 (630)
+.+.|+||+.|+.||+||++.-+ .+.+ +.+|.-.|..+.|+|- ..+|++++.|-++
T Consensus 201 y~~~vl~Tg~vd~~vr~wDir~~r~pl~e-----L~gh~~AVRkvk~Sph~~~lLaSasYDmT~---------------- 259 (311)
T KOG0277|consen 201 YNHNVLATGGVDNLVRGWDIRNLRTPLFE-----LNGHGLAVRKVKFSPHHASLLASASYDMTV---------------- 259 (311)
T ss_pred cCCcEEEecCCCceEEEEehhhcccccee-----ecCCceEEEEEecCcchhhHhhhccccceE----------------
Confidence 78899999999999999998654 2333 4899999999999997 6788999999999
Q ss_pred CccccccEEEeC--CCCceEEeccCCCCEEEEEEcCC--CeEEEEECCCcEEEEeC
Q 006825 544 DHMVVPETVFAL--SDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHL 595 (630)
Q Consensus 544 d~~i~~~~Vwdl--sgk~l~tL~GHs~~V~sLafSPd--~~LaSgS~DgtVrIWDl 595 (630)
+||+. ...++.+..-|+.-|..+.|++- +++|+.+.|..++||+.
T Consensus 260 -------riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 260 -------RIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred -------EecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 66665 33456677789999999999985 99999999999999984
No 80
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.87 E-value=7.7e-21 Score=209.92 Aligned_cols=244 Identities=15% Similarity=0.116 Sum_probs=210.8
Q ss_pred eeEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCC
Q 006825 315 WKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVT 391 (630)
Q Consensus 315 ~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpd 391 (630)
...+|...|++++ .++. ...+.+..|-| +++.|..-+.+. ++|+++...+-+.+ .|.+.|.+++.+||
T Consensus 395 SikiWn~~t~kci-----RTi~--~~y~l~~~Fvpgd~~Iv~G~k~Gel~-vfdlaS~~l~Eti~-AHdgaIWsi~~~pD 465 (888)
T KOG0306|consen 395 SIKIWNRDTLKCI-----RTIT--CGYILASKFVPGDRYIVLGTKNGELQ-VFDLASASLVETIR-AHDGAIWSISLSPD 465 (888)
T ss_pred cEEEEEccCccee-----EEec--cccEEEEEecCCCceEEEeccCCceE-EEEeehhhhhhhhh-ccccceeeeeecCC
Confidence 4679999999998 5544 23777788888 899999999999 99999999999988 99999999999999
Q ss_pred CCeEEeecCCCCC--------ccccC---------------CcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccce
Q 006825 392 GHKERRSSDERDT--------SSEKG---------------GRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTAL 446 (630)
Q Consensus 392 G~~lasgS~D~dt--------~s~~g---------------h~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~ 446 (630)
++.+++||.|+.. ....| -...|.|+.++|++ ++.+--|.+|++|=+.+-.+
T Consensus 466 ~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKF--- 542 (888)
T KOG0306|consen 466 NKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKF--- 542 (888)
T ss_pred CCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceee---
Confidence 9999999999810 00111 23468899999998 88888999999998765542
Q ss_pred eeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCe
Q 006825 447 YKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNH 526 (630)
Q Consensus 447 ~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~ 526 (630)
--.|.||.-+|.||.+|||+++|+|||.|++||||-+.=|.|.+.+ -+|...|.++.|.|+...+.+++.|+.
T Consensus 543 --flsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~-----fAHdDSvm~V~F~P~~~~FFt~gKD~k 615 (888)
T KOG0306|consen 543 --FLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSF-----FAHDDSVMSVQFLPKTHLFFTCGKDGK 615 (888)
T ss_pred --eeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhh-----hcccCceeEEEEcccceeEEEecCcce
Confidence 4579999999999999999999999999999999999989888874 799999999999999999999999999
Q ss_pred eeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcE
Q 006825 527 LEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTC 600 (630)
Q Consensus 527 I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~ 600 (630)
| +-||. .-+.+++|.||...|+|++.+|+ .+++|+|.|.+||+|.......
T Consensus 616 v-----------------------KqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~~ 668 (888)
T KOG0306|consen 616 V-----------------------KQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEIL 668 (888)
T ss_pred E-----------------------EeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccCcce
Confidence 9 56665 55789999999999999999999 8999999999999998765433
No 81
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.86 E-value=1.7e-20 Score=197.02 Aligned_cols=245 Identities=16% Similarity=0.154 Sum_probs=204.4
Q ss_pred eeEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCC
Q 006825 315 WKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVT 391 (630)
Q Consensus 315 ~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpd 391 (630)
...+.|-.+++.| .+|.||+-.|..+-|.| .++++|.|..+| +|.+-...+....+ .|...|+.+...|.
T Consensus 242 ~av~~d~~s~q~l-----~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~-vws~~~~s~~~~~~-~h~~~V~~ls~h~t 314 (506)
T KOG0289|consen 242 TAVLFDKPSNQIL-----ATLKGHTKKITSVKFHKDLDTVITASADEIIR-VWSVPLSSEPTSSR-PHEEPVTGLSLHPT 314 (506)
T ss_pred ceEEEecchhhhh-----hhccCcceEEEEEEeccchhheeecCCcceEE-eeccccccCccccc-cccccceeeeeccC
Confidence 3567787888888 99999999999999999 688999999999 99998877777777 89999999999999
Q ss_pred CCeEEeecCCC-----C--Ccc------ccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccC
Q 006825 392 GHKERRSSDER-----D--TSS------EKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHN 456 (630)
Q Consensus 392 G~~lasgS~D~-----d--t~s------~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt 456 (630)
|.|+.+.++|+ + ++. ..+....+++.+|.+|+ +.+|..|+.|++||++... .+..|.+|+
T Consensus 315 geYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~-----~~a~Fpght 389 (506)
T KOG0289|consen 315 GEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT-----NVAKFPGHT 389 (506)
T ss_pred CcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCcc-----ccccCCCCC
Confidence 99999999998 1 111 22334568999999999 6789999999999998765 356789999
Q ss_pred cCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccc
Q 006825 457 GSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSI 536 (630)
Q Consensus 457 ~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~ 536 (630)
++|..|+|+.+|-|||++.+|+.|++||++.-+..+++. ......+.++.|.+.|++++.++.+-.|.+.+...
T Consensus 390 ~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~----l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~-- 463 (506)
T KOG0289|consen 390 GPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQ----LDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKT-- 463 (506)
T ss_pred CceeEEEeccCceEEEEEecCCeEEEEEehhhcccceee----ccccccceeEEEcCCCCeEEeecceeEEEEEeccc--
Confidence 999999999999999999999999999999887766653 33334789999999999999997777763332211
Q ss_pred cccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeC
Q 006825 537 NRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHL 595 (630)
Q Consensus 537 ~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl 595 (630)
+ ...++.++.-|.+..+.+.|... ++|+++|+|..++|+-+
T Consensus 464 --------------k----~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 464 --------------K----SWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred --------------c----cceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 1 22466777889999999999888 99999999999998754
No 82
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=3.6e-22 Score=219.74 Aligned_cols=235 Identities=18% Similarity=0.186 Sum_probs=206.0
Q ss_pred ecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCcc
Q 006825 330 EEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSS 406 (630)
Q Consensus 330 eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s 406 (630)
-+++.+.-|+..|.++..+. .+++|++|-.+- +|.+.....+..+. +|...|.+|-|.+...+|
T Consensus 19 ~~~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~-L~~i~kp~~i~S~~-~hespIeSl~f~~~E~Ll----------- 85 (825)
T KOG0267|consen 19 WDTREFVAHSAAVGCLKIRKSSRSLVTGGEDEKVN-LWAIGKPNAITSLT-GHESPIESLTFDTSERLL----------- 85 (825)
T ss_pred ccchhhhhhhhhhceeeeeccceeeccCCCceeec-cccccCCchhheee-ccCCcceeeecCcchhhh-----------
Confidence 44566677888888887544 789999999998 99988777777788 999999999999875444
Q ss_pred ccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECc
Q 006825 407 EKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVV 486 (630)
Q Consensus 407 ~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~ 486 (630)
++|+.+|+|++||+.... .+++|.||...+..|+|+|-|.|.|+|+.|+.+++||++
T Consensus 86 ------------------aagsasgtiK~wDleeAk-----~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~R 142 (825)
T KOG0267|consen 86 ------------------AAGSASGTIKVWDLEEAK-----IVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIR 142 (825)
T ss_pred ------------------cccccCCceeeeehhhhh-----hhhhhhccccCcceeeeccceEEeccccccccceehhhh
Confidence 567788999999997543 468999999999999999999999999999999999999
Q ss_pred CCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEecc
Q 006825 487 ESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQG 565 (630)
Q Consensus 487 tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~G 565 (630)
...+... +.+|...|..++|+|+|++++.++.|.++ +||++ .|+.+.+|.+
T Consensus 143 k~Gc~~~-----~~s~~~vv~~l~lsP~Gr~v~~g~ed~tv-----------------------ki~d~~agk~~~ef~~ 194 (825)
T KOG0267|consen 143 KKGCSHT-----YKSHTRVVDVLRLSPDGRWVASGGEDNTV-----------------------KIWDLTAGKLSKEFKS 194 (825)
T ss_pred ccCceee-----ecCCcceeEEEeecCCCceeeccCCccee-----------------------eeeccccccccccccc
Confidence 7777777 47899999999999999999999999999 88998 7899999999
Q ss_pred CCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcEEEEeccee
Q 006825 566 HLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLRFAYGAFLN 628 (630)
Q Consensus 566 Hs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~lAsgs~~n 628 (630)
|...|..+.|+|. -+|++||.|++|++||+++.+.+...+ ....|.|++ ++.+..+.+|-.++
T Consensus 195 ~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 195 HEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred ccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhh
Confidence 9999999999998 788899999999999999998888777 788899999 88888888876544
No 83
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=2.2e-19 Score=183.18 Aligned_cols=261 Identities=14% Similarity=0.129 Sum_probs=198.8
Q ss_pred cccCCCceeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEEEEeeecCCCc-------------------
Q 006825 254 DESRGDSMSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNEIQEDGT------------------- 314 (630)
Q Consensus 254 d~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~~v~e~~~dg~------------------- 314 (630)
...+-|+|.+++||++++.. .++.+.+|++..+|+..-.....+.|.
T Consensus 13 ~~~~i~sl~fs~~G~~lits--------------s~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~ 78 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITS--------------SEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKE 78 (311)
T ss_pred CCCceeEEEecCCCCEEEEe--------------cCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCC
Confidence 34566889999999999442 455689999999998765533322222
Q ss_pred --eeEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEc
Q 006825 315 --WKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASS 389 (630)
Q Consensus 315 --~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfS 389 (630)
..++-++.+.+.| ..+.||...|..|..+| ..+|+|.|+++| +||+.+.++...+. --..+| +||.
T Consensus 79 d~tIryLsl~dNkyl-----RYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvr-LWDlR~~~cqg~l~-~~~~pi--~AfD 149 (311)
T KOG1446|consen 79 DDTIRYLSLHDNKYL-----RYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVR-LWDLRVKKCQGLLN-LSGRPI--AAFD 149 (311)
T ss_pred CCceEEEEeecCceE-----EEcCCCCceEEEEEecCCCCeEEecccCCeEE-eeEecCCCCceEEe-cCCCcc--eeEC
Confidence 3445555666666 88999999999999999 788999999999 99999888888776 333344 7899
Q ss_pred CCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCC
Q 006825 390 VTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGR 469 (630)
Q Consensus 390 pdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~ 469 (630)
|.|-.+|. +.....|++||++.-+.........-.+-....+.|.|||||+
T Consensus 150 p~GLifA~-----------------------------~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK 200 (311)
T KOG1446|consen 150 PEGLIFAL-----------------------------ANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGK 200 (311)
T ss_pred CCCcEEEE-----------------------------ecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCC
Confidence 98866543 3444479999987554222211111125567899999999999
Q ss_pred EEEEEeCCCcEEEEECcCCceeeeeecccccCcccc---eEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCcc
Q 006825 470 YLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNM---LLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHM 546 (630)
Q Consensus 470 ~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~---V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~ 546 (630)
+|+-+...+.+++-|.-+|..+..+ .++... -....|+||++++++++.||+|
T Consensus 201 ~iLlsT~~s~~~~lDAf~G~~~~tf-----s~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i------------------- 256 (311)
T KOG1446|consen 201 SILLSTNASFIYLLDAFDGTVKSTF-----SGYPNAGNLPLSATFTPDSKFVLSGSDDGTI------------------- 256 (311)
T ss_pred EEEEEeCCCcEEEEEccCCcEeeeE-----eeccCCCCcceeEEECCCCcEEEEecCCCcE-------------------
Confidence 9999999999999999999977775 333322 2578899999999999999999
Q ss_pred ccccEEEeC-CCCceEEecc-CCCCEEEEEEcCC-CeEEEEECCCcEEEEeCC
Q 006825 547 VVPETVFAL-SDKPICSFQG-HLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLS 596 (630)
Q Consensus 547 i~~~~Vwdl-sgk~l~tL~G-Hs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~ 596 (630)
.+|++ +|+.+..+.| |..++.++.|+|. -+++|+ +..+-+|=..
T Consensus 257 ----~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~ 303 (311)
T KOG1446|consen 257 ----HVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPD 303 (311)
T ss_pred ----EEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEEecc
Confidence 88888 8999999999 7999999999996 555555 5678888654
No 84
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.86 E-value=1.3e-20 Score=201.07 Aligned_cols=267 Identities=16% Similarity=0.122 Sum_probs=197.1
Q ss_pred eeeecCccceeEEEeec---ceEeecCCCccEecccCCCCc----eeEEecCCccCCEEEEEEcCCCCeEE--eecCC--
Q 006825 333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGG----MKSKKKGSWFKSIRTVASSVTGHKER--RSSDE-- 401 (630)
Q Consensus 333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~----~~~~lk~gH~~~V~sVAfSpdG~~la--sgS~D-- 401 (630)
-+|.+|+.+|.+|++-| .++|||.|.+|+ +||.+.-. .-+.+.-.-...|++++||+.|..|. +|+..
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~-~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqak 239 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVK-FWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAK 239 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEE-EEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCccee
Confidence 35789999999999998 899999999999 99986421 22222223445699999999887543 33321
Q ss_pred ---C----------------CCccccCCcceEEEeecCCCe---EEEecCCcEEEEEeCCCCccc-ceeeeeEecccCcC
Q 006825 402 ---R----------------DTSSEKGGRRSSSATDDSQDV---SFHGQERVRVRQYGKSCKDLT-ALYKCQEIQAHNGS 458 (630)
Q Consensus 402 ---~----------------dt~s~~gh~~~Vsa~~~s~d~---l~Sgs~Dg~VriWd~~~~el~-~~~~v~tL~gHt~~ 458 (630)
+ +...-+||...+++..+.+.. +++++.|+++|+|++....-. ..+......+-.-+
T Consensus 240 l~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~ 319 (641)
T KOG0772|consen 240 LLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVP 319 (641)
T ss_pred EEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccC
Confidence 1 223379999999999999987 899999999999998654311 11111122344557
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCccc--ceEEEEECCCCCEEEEeeCCCeeeeecccccc
Q 006825 459 IWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLN--MLLLANGSPEPTSLSPKHLDNHLEKKRRGRSI 536 (630)
Q Consensus 459 V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~--~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~ 536 (630)
++.++|++||++||+|..||.|.+|+.........+ .....|.. .|.+|.|++||++|++-+.|.++
T Consensus 320 ~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~--~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tL--------- 388 (641)
T KOG0772|consen 320 VTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVM--KVKDAHLPGQDITSISFSYDGNYLLSRGFDDTL--------- 388 (641)
T ss_pred ceeeecCCCcchhhhcccCCceeeeecCCcccccce--EeeeccCCCCceeEEEeccccchhhhccCCCce---------
Confidence 899999999999999999999999998443322221 11367766 89999999999999999999999
Q ss_pred cccccccCccccccEEEeC--CCCceEEeccCC--CCEEEEEEcCC-CeEEEEEC------CCcEEEEeCCCCcEEEEEe
Q 006825 537 NRKSLSLDHMVVPETVFAL--SDKPICSFQGHL--DDVLDLSWSKS-QHLLSSSM------DKTVRLWHLSSKTCLKIFS 605 (630)
Q Consensus 537 ~~~s~s~d~~i~~~~Vwdl--sgk~l~tL~GHs--~~V~sLafSPd-~~LaSgS~------DgtVrIWDl~tg~~l~t~~ 605 (630)
++|++ ..+++.+..|-. .+-+.++|||+ ++|+||.. -+++.++|..+-..++.+.
T Consensus 389 --------------KvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~ 454 (641)
T KOG0772|consen 389 --------------KVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKID 454 (641)
T ss_pred --------------eeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEec
Confidence 67777 346666666543 34578999999 88898843 5789999999988888887
Q ss_pred -cCCceEEEE-cCCCcEEEEec
Q 006825 606 -HSDYDISLV-DRLMLRFAYGA 625 (630)
Q Consensus 606 -H~~~V~sVa-s~~~~~lAsgs 625 (630)
....|..+. +|.+.-+..++
T Consensus 455 i~~aSvv~~~WhpkLNQi~~gs 476 (641)
T KOG0772|consen 455 ISTASVVRCLWHPKLNQIFAGS 476 (641)
T ss_pred CCCceEEEEeecchhhheeeec
Confidence 555555555 77666555553
No 85
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.86 E-value=3.8e-20 Score=195.65 Aligned_cols=218 Identities=17% Similarity=0.190 Sum_probs=172.8
Q ss_pred eeeecCccceeEEEeec----ceEeecCCCccEecccCCCCce-------eEEecCCccCCEEEEEEcCCCCeEEeecCC
Q 006825 333 EMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGM-------KSKKKGSWFKSIRTVASSVTGHKERRSSDE 401 (630)
Q Consensus 333 ~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~-------~~~lk~gH~~~V~sVAfSpdG~~lasgS~D 401 (630)
.+|.||..--..|++.+ .|++|+.|.+++ +||+..... +..+. +|...|..|+|.|--
T Consensus 171 l~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~-lwdi~~~~~~~~~~~p~~~~~-~h~~~VeDV~~h~~h--------- 239 (422)
T KOG0264|consen 171 LRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTIC-LWDINAESKEDKVVDPKTIFS-GHEDVVEDVAWHPLH--------- 239 (422)
T ss_pred eEEEeecccccccccccccceeEeeccCCCcEE-EEeccccccCCccccceEEee-cCCcceehhhccccc---------
Confidence 58999999888899988 799999999999 999975432 33444 899999999998842
Q ss_pred CCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc-CCCEEEEEeCCCcE
Q 006825 402 RDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASAGEDCVI 480 (630)
Q Consensus 402 ~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp-DG~~LASgS~DgtI 480 (630)
.+.+.+.+.|+++.|||++.. ...+.+..++|++.|+|++|+| ++.+|||||.|++|
T Consensus 240 -------------------~~lF~sv~dd~~L~iwD~R~~---~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV 297 (422)
T KOG0264|consen 240 -------------------EDLFGSVGDDGKLMIWDTRSN---TSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTV 297 (422)
T ss_pred -------------------hhhheeecCCCeEEEEEcCCC---CCCCcccccccCCceeEEEeCCCCCceEEeccCCCcE
Confidence 244678889999999999863 2235577899999999999999 78899999999999
Q ss_pred EEEECcCCce-eeeeecccccCcccceEEEEECCC-CCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCC
Q 006825 481 HVWQVVESER-KGELLEKQEDGHLNMLLLANGSPE-PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDK 558 (630)
Q Consensus 481 rVWDl~tg~~-~~~l~~~~~~gh~~~V~svafSpd-g~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk 558 (630)
+|||+++-.. +.. +.+|...|+.|.|+|. ..++++++.|+.+.+|+..+.....+.. +. =+-.-+
T Consensus 298 ~LwDlRnL~~~lh~-----~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~e-da-------~dgppE 364 (422)
T KOG0264|consen 298 ALWDLRNLNKPLHT-----FEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPE-DA-------EDGPPE 364 (422)
T ss_pred EEeechhcccCcee-----ccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChh-hh-------ccCCcc
Confidence 9999987543 233 5899999999999998 6788889999999777766521111100 00 000124
Q ss_pred ceEEeccCCCCEEEEEEcCC--CeEEEEECCCcEEEEeCC
Q 006825 559 PICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLS 596 (630)
Q Consensus 559 ~l~tL~GHs~~V~sLafSPd--~~LaSgS~DgtVrIWDl~ 596 (630)
++..-.||+..|..+.|+|. -.++|.+.|+.+.||++.
T Consensus 365 llF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 365 LLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred eeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 56777899999999999998 778899999999999986
No 86
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=4.1e-20 Score=188.17 Aligned_cols=239 Identities=15% Similarity=0.107 Sum_probs=194.1
Q ss_pred ceEeeecceeeecCccceeEEEeec-ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCC
Q 006825 325 RQLTIEEFEMCVGHSPIVQELMRRQ-NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERD 403 (630)
Q Consensus 325 ~~lt~eef~~l~GHs~~V~~Lafs~-~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~d 403 (630)
+..++..+-.+..|...+++||.+. ++||||.|-||+ |+|+.+..++..+- .|.+.|+++.|.+.-
T Consensus 29 ~~~~l~~lF~~~aH~~sitavAVs~~~~aSGssDetI~-IYDm~k~~qlg~ll-~HagsitaL~F~~~~----------- 95 (362)
T KOG0294|consen 29 VKPTLKPLFAFSAHAGSITALAVSGPYVASGSSDETIH-IYDMRKRKQLGILL-SHAGSITALKFYPPL----------- 95 (362)
T ss_pred cceeeeccccccccccceeEEEecceeEeccCCCCcEE-EEeccchhhhccee-ccccceEEEEecCCc-----------
Confidence 3444555566788999999999875 999999999999 99999999999998 899999999999852
Q ss_pred CccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEE
Q 006825 404 TSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVW 483 (630)
Q Consensus 404 t~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVW 483 (630)
+..-|++|+.||.|.+|++... .++.+|++|++.|+.|+++|.|++.++.+.|+++++|
T Consensus 96 ----------------S~shLlS~sdDG~i~iw~~~~W-----~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~W 154 (362)
T KOG0294|consen 96 ----------------SKSHLLSGSDDGHIIIWRVGSW-----ELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTW 154 (362)
T ss_pred ----------------chhheeeecCCCcEEEEEcCCe-----EEeeeecccccccceeEecCCCceEEEEcCCceeeee
Confidence 2224788999999999998655 3689999999999999999999999999999999999
Q ss_pred ECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEe
Q 006825 484 QVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSF 563 (630)
Q Consensus 484 Dl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL 563 (630)
|+.+|+....+. -.+ ....|.|+|.|.+++....++. -+|.+....+...
T Consensus 155 NLV~Gr~a~v~~----L~~--~at~v~w~~~Gd~F~v~~~~~i------------------------~i~q~d~A~v~~~ 204 (362)
T KOG0294|consen 155 NLVRGRVAFVLN----LKN--KATLVSWSPQGDHFVVSGRNKI------------------------DIYQLDNASVFRE 204 (362)
T ss_pred hhhcCccceeec----cCC--cceeeEEcCCCCEEEEEeccEE------------------------EEEecccHhHhhh
Confidence 999998766642 222 2334999999998888866653 4555532222222
Q ss_pred ccCCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE---cCCCcEEEEecce
Q 006825 564 QGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV---DRLMLRFAYGAFL 627 (630)
Q Consensus 564 ~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa---s~~~~~lAsgs~~ 627 (630)
......+.++.|-...+|++|..|+.|++||..++.++..|. |...|.++. .+...+|++++.+
T Consensus 205 i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSD 272 (362)
T KOG0294|consen 205 IENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSD 272 (362)
T ss_pred hhccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccC
Confidence 223356788888766999999999999999999999999998 999999999 7777888887655
No 87
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.85 E-value=7e-20 Score=209.74 Aligned_cols=257 Identities=16% Similarity=0.130 Sum_probs=196.9
Q ss_pred eecCc-cceeEEEeec---ceEeec--CCCccEecccCCC------------CceeEEecCCccCCEEEEEEcCCCCeEE
Q 006825 335 CVGHS-PIVQELMRRQ---NVEEGN--KDSFDLNNNGSSG------------GGMKSKKKGSWFKSIRTVASSVTGHKER 396 (630)
Q Consensus 335 l~GHs-~~V~~Lafs~---~laSgS--~D~tvr~vWD~~t------------G~~~~~lk~gH~~~V~sVAfSpdG~~la 396 (630)
+++|- ..|-++..+| .+|||+ .|++++ +|.... .+.+.+.. .|.+.|.||-|+|||+|||
T Consensus 8 wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~-iW~~~~vl~~~~~~~~~l~k~l~~m~-~h~~sv~CVR~S~dG~~lA 85 (942)
T KOG0973|consen 8 WVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIV-IWSQDPVLDEKEEKNENLPKHLCTMD-DHDGSVNCVRFSPDGSYLA 85 (942)
T ss_pred ccccCCeeEEEEEecCCceeEecCCccccccce-eeccccccchhhhhhcccchhheeec-cccCceeEEEECCCCCeEe
Confidence 34443 3467778888 789999 999999 996542 22344555 8999999999999999998
Q ss_pred eecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCC-------------CcccceeeeeEecccCcCEEEEE
Q 006825 397 RSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSC-------------KDLTALYKCQEIQAHNGSIWSIK 463 (630)
Q Consensus 397 sgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~-------------~el~~~~~v~tL~gHt~~V~sVa 463 (630)
+||+|+ .|.+|.... .....+.++..|.+|..-|..++
T Consensus 86 sGSDD~-----------------------------~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~ 136 (942)
T KOG0973|consen 86 SGSDDR-----------------------------LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVN 136 (942)
T ss_pred eccCcc-----------------------------eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceec
Confidence 888775 344444331 01122346788999999999999
Q ss_pred EccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccccccc------
Q 006825 464 FSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSIN------ 537 (630)
Q Consensus 464 FSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~------ 537 (630)
|+|++.+|||+|.|++|.||+..+.+.+..+ .+|...|..+.|.|-|+|+++-+.|++|++|+......
T Consensus 137 Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl-----~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~ 211 (942)
T KOG0973|consen 137 WSPDDSLLVSVSLDNSVIIWNAKTFELLKVL-----RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITK 211 (942)
T ss_pred cCCCccEEEEecccceEEEEccccceeeeee-----ecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeecc
Confidence 9999999999999999999999999877774 89999999999999999999999999999999654211
Q ss_pred ------------ccccccCcccccc-----------EEEeC-CCCceEEeccCCCCEEEEEEcCC------C--------
Q 006825 538 ------------RKSLSLDHMVVPE-----------TVFAL-SDKPICSFQGHLDDVLDLSWSKS------Q-------- 579 (630)
Q Consensus 538 ------------~~s~s~d~~i~~~-----------~Vwdl-sgk~l~tL~GHs~~V~sLafSPd------~-------- 579 (630)
+.++++|+.+.+. .|..- +-+.-..|.||..+|.++.|+|. +
T Consensus 212 pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~ 291 (942)
T KOG0973|consen 212 PFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPN 291 (942)
T ss_pred chhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCC
Confidence 1334555544221 12222 22344568999999999999972 3
Q ss_pred ----eEEEEECCCcEEEEeCCCCcEEEEEe--cCCceEEEE-cCCCcEEEEecce
Q 006825 580 ----HLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYDISLV-DRLMLRFAYGAFL 627 (630)
Q Consensus 580 ----~LaSgS~DgtVrIWDl~tg~~l~t~~--H~~~V~sVa-s~~~~~lAsgs~~ 627 (630)
.+|+||.|++|-||.....+++..+. -...|..+. ++++..|-.-+.+
T Consensus 292 ~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~D 346 (942)
T KOG0973|consen 292 CYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLD 346 (942)
T ss_pred cceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecC
Confidence 67899999999999998888888776 678899999 8888776655443
No 88
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.85 E-value=2.8e-20 Score=213.04 Aligned_cols=250 Identities=17% Similarity=0.164 Sum_probs=190.8
Q ss_pred eeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCcc
Q 006825 261 MSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSP 340 (630)
Q Consensus 261 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~ 340 (630)
|.+||||+|+ |++.++....||....+ ......|......++...+.. ..|.||..
T Consensus 75 VR~S~dG~~l--------------AsGSDD~~v~iW~~~~~-----~~~~~fgs~g~~~~vE~wk~~-----~~l~~H~~ 130 (942)
T KOG0973|consen 75 VRFSPDGSYL--------------ASGSDDRLVMIWERAEI-----GSGTVFGSTGGAKNVESWKVV-----SILRGHDS 130 (942)
T ss_pred EEECCCCCeE--------------eeccCcceEEEeeeccc-----CCcccccccccccccceeeEE-----EEEecCCC
Confidence 7899999999 66667788999998741 111112222234444444555 89999999
Q ss_pred ceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEe
Q 006825 341 IVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSAT 417 (630)
Q Consensus 341 ~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~ 417 (630)
-|..|+++| +|||+|.|++|. +|+..+.+.+.+++ +|...|+.|.|.|-|+|+|+-++
T Consensus 131 DV~Dv~Wsp~~~~lvS~s~DnsVi-iwn~~tF~~~~vl~-~H~s~VKGvs~DP~Gky~ASqsd----------------- 191 (942)
T KOG0973|consen 131 DVLDVNWSPDDSLLVSVSLDNSVI-IWNAKTFELLKVLR-GHQSLVKGVSWDPIGKYFASQSD----------------- 191 (942)
T ss_pred ccceeccCCCccEEEEecccceEE-EEccccceeeeeee-cccccccceEECCccCeeeeecC-----------------
Confidence 999999999 899999999999 99999999999999 99999999999999999976554
Q ss_pred ecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccC------cCEEEEEEccCCCEEEEEe----CCCcEEEEECcC
Q 006825 418 DDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHN------GSIWSIKFSLDGRYLASAG----EDCVIHVWQVVE 487 (630)
Q Consensus 418 ~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt------~~V~sVaFSpDG~~LASgS----~DgtIrVWDl~t 487 (630)
|++|++|++..- .+.+.+.++. -.++.+.|||||++|++.- .-.++.|-+-.+
T Consensus 192 ------------Drtikvwrt~dw-----~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~t 254 (942)
T KOG0973|consen 192 ------------DRTLKVWRTSDW-----GIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGT 254 (942)
T ss_pred ------------CceEEEEEcccc-----eeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCC
Confidence 458999986432 2344555543 3578999999999999963 334677777666
Q ss_pred CceeeeeecccccCcccceEEEEECCC-----CC------------EEEEeeCCCeeeeecccccccccccccCcccccc
Q 006825 488 SERKGELLEKQEDGHLNMLLLANGSPE-----PT------------SLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPE 550 (630)
Q Consensus 488 g~~~~~l~~~~~~gh~~~V~svafSpd-----g~------------~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~ 550 (630)
.+.-.. +.||..++.+++|+|. .. .+|+|+.|+.|
T Consensus 255 Wk~~~~-----LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSl----------------------- 306 (942)
T KOG0973|consen 255 WKVDKD-----LVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSL----------------------- 306 (942)
T ss_pred ceeeee-----eecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccE-----------------------
Confidence 655555 4899999999999883 11 67889999999
Q ss_pred EEEeC-CCCceEEec-cCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCC
Q 006825 551 TVFAL-SDKPICSFQ-GHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK 598 (630)
Q Consensus 551 ~Vwdl-sgk~l~tL~-GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg 598 (630)
.||.. .-+|+.... --...|.+++|+|| -.|+.+|.||+|.+.+.+..
T Consensus 307 SVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 307 SVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred EEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 56665 334443322 12357999999999 77889999999999998754
No 89
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=4e-20 Score=195.93 Aligned_cols=286 Identities=16% Similarity=0.135 Sum_probs=209.7
Q ss_pred cccccEEEEECCCCcEEEEeeec-C---CCce--e--EEEEcCCCce-Eeeecc------eeeecCccceeEEEeec---
Q 006825 288 VAEQGCLIKNLDNGKEFVVNEIQ-E---DGTW--K--KVKEVGTGRQ-LTIEEF------EMCVGHSPIVQELMRRQ--- 349 (630)
Q Consensus 288 ~~~~~~~I~~LddG~~~~v~e~~-~---dg~~--~--~l~dv~TG~~-lt~eef------~~l~GHs~~V~~Lafs~--- 349 (630)
.+...|++|+|.+|...+....+ . -+.. . .+--.+-+|+ |-+-++ +...---+.|.+|+-.|
T Consensus 15 ~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~ 94 (476)
T KOG0646|consen 15 FDPINCIVWDLRTGTSLLQYKGSYLAQAASLTALNNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGY 94 (476)
T ss_pred CCCcceeEEecCCCceeEEecCcccccchhhhhhchhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCce
Confidence 55667999999999887763332 1 0110 0 0111111222 111111 11111235688888888
Q ss_pred ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecC
Q 006825 350 NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQE 429 (630)
Q Consensus 350 ~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~ 429 (630)
+|+.|.--+.+. +|-+++|..+.++. +|...|+++.|+-||.++ ++|+.
T Consensus 95 ~l~ag~i~g~lY-lWelssG~LL~v~~-aHYQ~ITcL~fs~dgs~i-----------------------------iTgsk 143 (476)
T KOG0646|consen 95 FLLAGTISGNLY-LWELSSGILLNVLS-AHYQSITCLKFSDDGSHI-----------------------------ITGSK 143 (476)
T ss_pred EEEeecccCcEE-EEEeccccHHHHHH-hhccceeEEEEeCCCcEE-----------------------------EecCC
Confidence 666666889999 99999999999997 999999999999999877 56677
Q ss_pred CcEEEEEeCCC-----CcccceeeeeEecccCcCEEEEEEccCC--CEEEEEeCCCcEEEEECcCCceeeeeecccccCc
Q 006825 430 RVRVRQYGKSC-----KDLTALYKCQEIQAHNGSIWSIKFSLDG--RYLASAGEDCVIHVWQVVESERKGELLEKQEDGH 502 (630)
Q Consensus 430 Dg~VriWd~~~-----~el~~~~~v~tL~gHt~~V~sVaFSpDG--~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh 502 (630)
||.|++|.+.. .+. .....+.|..|+-+|+++...+.| .+|+|+|.|.+||+||+..+..+..+. -
T Consensus 144 Dg~V~vW~l~~lv~a~~~~-~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~------f 216 (476)
T KOG0646|consen 144 DGAVLVWLLTDLVSADNDH-SVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT------F 216 (476)
T ss_pred CccEEEEEEEeecccccCC-CccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe------c
Confidence 78889997531 110 223467899999999999998754 589999999999999999998776643 2
Q ss_pred ccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCC--CEEEEEEcCC-C
Q 006825 503 LNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLD--DVLDLSWSKS-Q 579 (630)
Q Consensus 503 ~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~--~V~sLafSPd-~ 579 (630)
...+.+++..|..+.+..|..+|.|.+-....... ...-+..+.+...+..+..|.||.+ .|+||+.+-| .
T Consensus 217 p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~------~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt 290 (476)
T KOG0646|consen 217 PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSG------QSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGT 290 (476)
T ss_pred CCcceeEEEcccccEEEecCCcceEEeeehhcCCc------ccccccccccccccceeeeeccccCCcceeEEEEecCcc
Confidence 35688999999999999999999985443322110 0000012555667778889999999 9999999999 9
Q ss_pred eEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCC
Q 006825 580 HLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRL 617 (630)
Q Consensus 580 ~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~ 617 (630)
+|++|+.||.|+|||+.+.+|++++. ..++|+.+. .|.
T Consensus 291 lLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 291 LLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL 330 (476)
T ss_pred EEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence 99999999999999999999999998 789999888 444
No 90
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=5.2e-19 Score=180.42 Aligned_cols=255 Identities=13% Similarity=0.078 Sum_probs=204.3
Q ss_pred CccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC------------
Q 006825 338 HSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER------------ 402 (630)
Q Consensus 338 Hs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~------------ 402 (630)
-...|.+|.|++ .|++.+.|-+++ ++|..+|++++++. .+.-.|..+.|......+.-++.-.
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~-LYd~~~g~~~~ti~-skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dN 90 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLR-LYDSLSGKQVKTIN-SKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDN 90 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEE-EEEcCCCceeeEee-cccccccEEEEecCCceEEEccCCCCCceEEEEeecC
Confidence 345688999988 688889999999 99999999999988 7777888888987666655555422
Q ss_pred -CCccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCc
Q 006825 403 -DTSSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCV 479 (630)
Q Consensus 403 -dt~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~Dgt 479 (630)
-...+.||...|+.+..++.. +++++.|.+||+||++..+..++ + |...--.++|.|.|-++|.+..-..
T Consensus 91 kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~-----l--~~~~~pi~AfDp~GLifA~~~~~~~ 163 (311)
T KOG1446|consen 91 KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGL-----L--NLSGRPIAAFDPEGLIFALANGSEL 163 (311)
T ss_pred ceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceE-----E--ecCCCcceeECCCCcEEEEecCCCe
Confidence 122399999999999999876 99999999999999986653221 1 2233346899999999999988889
Q ss_pred EEEEECcCC-c-eeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-C
Q 006825 480 IHVWQVVES-E-RKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-S 556 (630)
Q Consensus 480 IrVWDl~tg-~-~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-s 556 (630)
|+|+|++.- + +...+. . ..+.......+.|+|||++|+.+...+.+ .+.+. +
T Consensus 164 IkLyD~Rs~dkgPF~tf~-i-~~~~~~ew~~l~FS~dGK~iLlsT~~s~~-----------------------~~lDAf~ 218 (311)
T KOG1446|consen 164 IKLYDLRSFDKGPFTTFS-I-TDNDEAEWTDLEFSPDGKSILLSTNASFI-----------------------YLLDAFD 218 (311)
T ss_pred EEEEEecccCCCCceeEc-c-CCCCccceeeeEEcCCCCEEEEEeCCCcE-----------------------EEEEccC
Confidence 999999754 2 222221 1 12456678899999999999999888877 55555 8
Q ss_pred CCceEEeccCCCCE---EEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe--cCCceEEEE-cCCCcEEEEecc
Q 006825 557 DKPICSFQGHLDDV---LDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYDISLV-DRLMLRFAYGAF 626 (630)
Q Consensus 557 gk~l~tL~GHs~~V---~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~--H~~~V~sVa-s~~~~~lAsgs~ 626 (630)
|..+.+|.+|...= ...+|.|| +++++|+.||+|.+|++++|..+..+. +...+.|+. +|....+++++.
T Consensus 219 G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s 295 (311)
T KOG1446|consen 219 GTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASS 295 (311)
T ss_pred CcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCc
Confidence 99999998887543 67889999 999999999999999999999999887 789999999 888888888764
No 91
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=3e-20 Score=202.90 Aligned_cols=246 Identities=15% Similarity=0.152 Sum_probs=199.5
Q ss_pred eecCCCceeEEEEcCCCce--EeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCC--ceeEEecCCcc
Q 006825 308 EIQEDGTWKKVKEVGTGRQ--LTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGG--GMKSKKKGSWF 380 (630)
Q Consensus 308 e~~~dg~~~~l~dv~TG~~--lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG--~~~~~lk~gH~ 380 (630)
..|.||. .++|.+..-.. -+. -...+.-|+..|..++... .|+|+|.|.||+ +|++..+ -++.+++ .|.
T Consensus 42 TgGRDg~-i~~W~~~~d~~~~s~~-~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK-~W~~~~~~~~c~stir-~H~ 117 (735)
T KOG0308|consen 42 TGGRDGI-IRLWSVTQDSNEPSTP-YIASMEHHSDWVNDIILCGNGKTLISASSDTTVK-VWNAHKDNTFCMSTIR-THK 117 (735)
T ss_pred ecCCCce-EEEeccccccCCcccc-hhhhhhhhHhHHhhHHhhcCCCceEEecCCceEE-EeecccCcchhHhhhh-ccc
Confidence 3455665 45676653221 100 1366788999999988755 899999999999 9999888 6888888 999
Q ss_pred CCEEEEEEc-CCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcc--c---ceeeeeEec-
Q 006825 381 KSIRTVASS-VTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDL--T---ALYKCQEIQ- 453 (630)
Q Consensus 381 ~~V~sVAfS-pdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el--~---~~~~v~tL~- 453 (630)
..|+|+|.. ++. ..+++|+-|++|.+||+.++.. . .......+.
T Consensus 118 DYVkcla~~ak~~-----------------------------~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~s 168 (735)
T KOG0308|consen 118 DYVKCLAYIAKNN-----------------------------ELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGS 168 (735)
T ss_pred chheeeeecccCc-----------------------------eeEEecCCCccEEEEEccCcchhhhhhccccccccCCC
Confidence 999999984 332 2257888899999999986621 1 111234455
Q ss_pred ccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccc
Q 006825 454 AHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRG 533 (630)
Q Consensus 454 gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~ 533 (630)
||..+|++++.++.|..|++||..+.|++||-++++.+..| .||...|..+..+.||+.+++++.|++|
T Consensus 169 G~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkL-----rGHTdNVr~ll~~dDGt~~ls~sSDgtI------ 237 (735)
T KOG0308|consen 169 GPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKL-----RGHTDNVRVLLVNDDGTRLLSASSDGTI------ 237 (735)
T ss_pred CCccceeeeecCCcceEEEecCcccceEEeccccccceeee-----eccccceEEEEEcCCCCeEeecCCCceE------
Confidence 99999999999999999999999999999999999988885 7999999999999999999999999999
Q ss_pred ccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCC-CcEEEEEecCCce
Q 006825 534 RSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSS-KTCLKIFSHSDYD 610 (630)
Q Consensus 534 ~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~t-g~~l~t~~H~~~V 610 (630)
++|++ ..+++.++..|...|+++.-+|+ .++.+|+.|+.|..=|+++ .++...++...+|
T Consensus 238 -----------------rlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv 300 (735)
T KOG0308|consen 238 -----------------RLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPV 300 (735)
T ss_pred -----------------EeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCch
Confidence 88888 67899999999999999999999 9999999999999999998 5666666544444
Q ss_pred EEEE
Q 006825 611 ISLV 614 (630)
Q Consensus 611 ~sVa 614 (630)
..+.
T Consensus 301 ~~l~ 304 (735)
T KOG0308|consen 301 LKLH 304 (735)
T ss_pred hhhh
Confidence 4444
No 92
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.84 E-value=1.2e-19 Score=190.83 Aligned_cols=224 Identities=17% Similarity=0.189 Sum_probs=189.8
Q ss_pred cceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEE
Q 006825 340 PIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSA 416 (630)
Q Consensus 340 ~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa 416 (630)
+.+.+|-..| .+.+|+.|+++. +.|-.+++.+.+++ ||...|..|.|+|+-.
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av-~~d~~s~q~l~~~~-Gh~kki~~v~~~~~~~----------------------- 274 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAV-LFDKPSNQILATLK-GHTKKITSVKFHKDLD----------------------- 274 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceE-EEecchhhhhhhcc-CcceEEEEEEeccchh-----------------------
Confidence 4456665554 789999999999 99999999999999 9999999999999743
Q ss_pred eecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeec
Q 006825 417 TDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLE 496 (630)
Q Consensus 417 ~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~ 496 (630)
-+++++.|..|++|...... +...+..|..+|+.+..+|.|.||++++.|+++...|++++..+....
T Consensus 275 ------~v~~aSad~~i~vws~~~~s-----~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs- 342 (506)
T KOG0289|consen 275 ------TVITASADEIIRVWSVPLSS-----EPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVS- 342 (506)
T ss_pred ------heeecCCcceEEeecccccc-----CccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEe-
Confidence 24667778899999875442 456678899999999999999999999999999999999998876642
Q ss_pred ccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEE
Q 006825 497 KQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSW 575 (630)
Q Consensus 497 ~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLaf 575 (630)
.....-.+.+++|||||.++.+|..|+.+ ++|++ ++..+..|.||+++|..++|
T Consensus 343 --~~~s~v~~ts~~fHpDgLifgtgt~d~~v-----------------------kiwdlks~~~~a~Fpght~~vk~i~F 397 (506)
T KOG0289|consen 343 --DETSDVEYTSAAFHPDGLIFGTGTPDGVV-----------------------KIWDLKSQTNVAKFPGHTGPVKAISF 397 (506)
T ss_pred --eccccceeEEeeEcCCceEEeccCCCceE-----------------------EEEEcCCccccccCCCCCCceeEEEe
Confidence 11233458899999999999999999999 88888 56788899999999999999
Q ss_pred cCC-CeEEEEECCCcEEEEeCCCCcEEEEEe--cCCceEEEE-cCCCcEEEEec
Q 006825 576 SKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYDISLV-DRLMLRFAYGA 625 (630)
Q Consensus 576 SPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~--H~~~V~sVa-s~~~~~lAsgs 625 (630)
+.+ -+|++++.|+.|++||++.-+..++|. ....|.++. +..+.+++.++
T Consensus 398 sENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g 451 (506)
T KOG0289|consen 398 SENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAG 451 (506)
T ss_pred ccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeec
Confidence 999 789999999999999999988888887 444688888 77777777664
No 93
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.84 E-value=1.7e-19 Score=179.88 Aligned_cols=236 Identities=14% Similarity=0.105 Sum_probs=195.4
Q ss_pred eeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEec-CCccCCEEEEEEcCCCCeEEeecCCCCCcccc
Q 006825 333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKK-GSWFKSIRTVASSVTGHKERRSSDERDTSSEK 408 (630)
Q Consensus 333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk-~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~ 408 (630)
..+.||...|.+|+|.- .||+|+.|++++ +|++..++.+..+. .||...|-.++|.|.
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~-v~n~e~~r~~~~~~~~gh~~svdql~w~~~----------------- 75 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVS-VWNLERDRFRKELVYRGHTDSVDQLCWDPK----------------- 75 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceE-EEEecchhhhhhhcccCCCcchhhheeCCC-----------------
Confidence 34678999999999987 899999999999 99998875544332 289999999999985
Q ss_pred CCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCC
Q 006825 409 GGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVES 488 (630)
Q Consensus 409 gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg 488 (630)
.++.+++++.|.+|++||....+ +++.+..-.+.| -+.|+|+|++++.++.|-.|-..|.++.
T Consensus 76 -----------~~d~~atas~dk~ir~wd~r~~k-----~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~ 138 (313)
T KOG1407|consen 76 -----------HPDLFATASGDKTIRIWDIRSGK-----CTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTY 138 (313)
T ss_pred -----------CCcceEEecCCceEEEEEeccCc-----EEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEeccc
Confidence 45667889999999999987764 455555444444 5889999999999999999999988654
Q ss_pred ceeee-----------------------------ee-------cccccCcccceEEEEECCCCCEEEEeeCCCeeeeecc
Q 006825 489 ERKGE-----------------------------LL-------EKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRR 532 (630)
Q Consensus 489 ~~~~~-----------------------------l~-------~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~ 532 (630)
+.... ++ ......|.....+|.|+|+|+++|+|+.|..+
T Consensus 139 ~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlv----- 213 (313)
T KOG1407|consen 139 KIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALV----- 213 (313)
T ss_pred ceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeecccccee-----
Confidence 43211 00 11235788888999999999999999999998
Q ss_pred cccccccccccCccccccEEEeCC-CCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEecCCce
Q 006825 533 GRSINRKSLSLDHMVVPETVFALS-DKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYD 610 (630)
Q Consensus 533 ~~~~~~~s~s~d~~i~~~~Vwdls-gk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~H~~~V 610 (630)
.+|++. --+++.+.-|.-+|..|+|+.+ ++||+||.|..|-|=++++|..+..+++.++-
T Consensus 214 ------------------SLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~t 275 (313)
T KOG1407|consen 214 ------------------SLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEGPT 275 (313)
T ss_pred ------------------eccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccCCc
Confidence 788874 3577888889999999999999 99999999999999999999999999999999
Q ss_pred EEEE-cCCCcEEEEecc
Q 006825 611 ISLV-DRLMLRFAYGAF 626 (630)
Q Consensus 611 ~sVa-s~~~~~lAsgs~ 626 (630)
..|+ +|....||++..
T Consensus 276 ~tVAWHPk~~LLAyA~d 292 (313)
T KOG1407|consen 276 FTVAWHPKRPLLAYACD 292 (313)
T ss_pred eeEEecCCCceeeEEec
Confidence 9999 999999988754
No 94
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.83 E-value=8.2e-19 Score=175.41 Aligned_cols=229 Identities=14% Similarity=0.167 Sum_probs=191.2
Q ss_pred eeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCC
Q 006825 334 MCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGG 410 (630)
Q Consensus 334 ~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh 410 (630)
.|.||..+++++-+.. .|.|.+.|.++- ||=..+|+.+.+.. ||++.|.+++..-+.+++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~-vw~s~nGerlGty~-GHtGavW~~Did~~s~~l--------------- 67 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPT-VWYSLNGERLGTYD-GHTGAVWCCDIDWDSKHL--------------- 67 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCce-EEEecCCceeeeec-CCCceEEEEEecCCccee---------------
Confidence 5789999999999976 899999999999 99999999999999 999999999988876666
Q ss_pred cceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEe-----CCCcEEEEEC
Q 006825 411 RRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG-----EDCVIHVWQV 485 (630)
Q Consensus 411 ~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS-----~DgtIrVWDl 485 (630)
++|+.|.++++||+.+++. +.+++ -..+|..+.|+++|++++... .-+.|.++|+
T Consensus 68 --------------iTGSAD~t~kLWDv~tGk~-----la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi 127 (327)
T KOG0643|consen 68 --------------ITGSADQTAKLWDVETGKQ-----LATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDI 127 (327)
T ss_pred --------------eeccccceeEEEEcCCCcE-----EEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEc
Confidence 5566777899999998852 34443 456899999999999877664 4467999999
Q ss_pred cCC-------ceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CC
Q 006825 486 VES-------ERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SD 557 (630)
Q Consensus 486 ~tg-------~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sg 557 (630)
+.. ++...+ .-+...+..+-|.|-+.+|++|..+|.| .+|++ +|
T Consensus 128 ~~~~~~~~s~ep~~kI-----~t~~skit~a~Wg~l~~~ii~Ghe~G~i-----------------------s~~da~~g 179 (327)
T KOG0643|consen 128 RDDSSDIDSEEPYLKI-----PTPDSKITSALWGPLGETIIAGHEDGSI-----------------------SIYDARTG 179 (327)
T ss_pred cCChhhhcccCceEEe-----cCCccceeeeeecccCCEEEEecCCCcE-----------------------EEEEcccC
Confidence 733 223332 3455788899999999999999999999 77887 55
Q ss_pred -CceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEecCCceEEEE-cCCCcEEEEecce
Q 006825 558 -KPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYDISLV-DRLMLRFAYGAFL 627 (630)
Q Consensus 558 -k~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~H~~~V~sVa-s~~~~~lAsgs~~ 627 (630)
+.+..-+-|...|+.|+|+|+ .+++|+|.|.+.+|||+.+-+++++|.-.-+|++.+ .|....+..++..
T Consensus 180 ~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGq 252 (327)
T KOG0643|consen 180 KELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQ 252 (327)
T ss_pred ceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCc
Confidence 445556779999999999999 999999999999999999999999999889999999 7777666666543
No 95
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.83 E-value=7e-20 Score=185.89 Aligned_cols=237 Identities=14% Similarity=0.158 Sum_probs=186.4
Q ss_pred ceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEec-CCccCCEEEEEEcCCCCeEEeecCCCCCccc
Q 006825 332 FEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKK-GSWFKSIRTVASSVTGHKERRSSDERDTSSE 407 (630)
Q Consensus 332 f~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk-~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~ 407 (630)
+.+|.-|...|..|.|.| .|+|||.|+|++ +.|......++-+| ..-...|+++.|.|.|.++..
T Consensus 165 IRTlYDH~devn~l~FHPre~ILiS~srD~tvK-lFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllv---------- 233 (430)
T KOG0640|consen 165 IRTLYDHVDEVNDLDFHPRETILISGSRDNTVK-LFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLV---------- 233 (430)
T ss_pred EeehhhccCcccceeecchhheEEeccCCCeEE-EEecccHHHHHHHHHhhccceeeeEeecCCCceEEE----------
Confidence 588999999999999999 899999999999 99987655444333 135668999999999987754
Q ss_pred cCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcC
Q 006825 408 KGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVE 487 (630)
Q Consensus 408 ~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~t 487 (630)
|.+--++|+||+.+-+. +.....-.+|++.|++|.+++.|++.+|||.||.|||||-..
T Consensus 234 -------------------gTdHp~~rlYdv~T~Qc--fvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS 292 (430)
T KOG0640|consen 234 -------------------GTDHPTLRLYDVNTYQC--FVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVS 292 (430)
T ss_pred -------------------ecCCCceeEEeccceeE--eeecCcccccccceeEEEecCCccEEEEeccCCcEEeecccc
Confidence 34445699999976532 111123367999999999999999999999999999999999
Q ss_pred CceeeeeecccccCccc-ceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEecc
Q 006825 488 SERKGELLEKQEDGHLN-MLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQG 565 (630)
Q Consensus 488 g~~~~~l~~~~~~gh~~-~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~G 565 (630)
+.|+.++ ...|.+ .|.+..|..+++++++.+.|..+ ++|.+ +++++.++.|
T Consensus 293 ~rCv~t~----~~AH~gsevcSa~Ftkn~kyiLsSG~DS~v-----------------------kLWEi~t~R~l~~YtG 345 (430)
T KOG0640|consen 293 NRCVRTI----GNAHGGSEVCSAVFTKNGKYILSSGKDSTV-----------------------KLWEISTGRMLKEYTG 345 (430)
T ss_pred HHHHHHH----HhhcCCceeeeEEEccCCeEEeecCCccee-----------------------eeeeecCCceEEEEec
Confidence 9999886 356654 57889999999999999999999 78888 7888888865
Q ss_pred CC--C---CEEEEEEcCC-CeEEEEE-CCCcEEEEeCCCCcEEEEEe--cCCceEEEE-cCCCcEEEEecce
Q 006825 566 HL--D---DVLDLSWSKS-QHLLSSS-MDKTVRLWHLSSKTCLKIFS--HSDYDISLV-DRLMLRFAYGAFL 627 (630)
Q Consensus 566 Hs--~---~V~sLafSPd-~~LaSgS-~DgtVrIWDl~tg~~l~t~~--H~~~V~sVa-s~~~~~lAsgs~~ 627 (630)
-. + --+...|+.. .|++.-- ..+.+.-||.+++..+..+. |++.|.++. +|..-.+.+.+.+
T Consensus 346 Ag~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD 417 (430)
T KOG0640|consen 346 AGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDD 417 (430)
T ss_pred CCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeeccc
Confidence 41 1 1244567666 6666443 35678899999987766665 999999999 8888888777643
No 96
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=3.2e-19 Score=181.41 Aligned_cols=252 Identities=15% Similarity=0.197 Sum_probs=199.6
Q ss_pred EEeeecCCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCC------C-------
Q 006825 305 VVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSS------G------- 368 (630)
Q Consensus 305 ~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~------t------- 368 (630)
++.....|. +.++|.+.+|++| .++.||.+.|+++.|++ .++++|.|.+.. ||..+ .
T Consensus 162 i~gtASADh-TA~iWs~Esg~CL-----~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taH-IW~~av~~~vP~~~a~~~h 234 (481)
T KOG0300|consen 162 ICGTASADH-TARIWSLESGACL-----ATYTGHTGSVNSIKFHNSGLLLLTASGDETAH-IWKAAVNWEVPSNNAPSDH 234 (481)
T ss_pred ceeeccccc-ceeEEeeccccce-----eeecccccceeeEEeccccceEEEccCCcchH-HHHHhhcCcCCCCCCCCCC
Confidence 444444444 4779999999999 99999999999999999 789999999999 99511 0
Q ss_pred -----------------------Cc----eeEEecCCccCCEEEEEEcCCCCeEEeecCCC-------CC----ccccCC
Q 006825 369 -----------------------GG----MKSKKKGSWFKSIRTVASSVTGHKERRSSDER-------DT----SSEKGG 410 (630)
Q Consensus 369 -----------------------G~----~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-------dt----~s~~gh 410 (630)
|. .+..++ ||...|-+.-|-..|+.++++|.|+ ++ ..+.||
T Consensus 235 SsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~lt-gH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGH 313 (481)
T KOG0300|consen 235 SSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLT-GHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGH 313 (481)
T ss_pred CchhhhhcccccccccccccccCCceeeeeeeeee-ccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCc
Confidence 11 234566 8999999999999999999999998 22 237888
Q ss_pred cceEEEeecCCC--eEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCC
Q 006825 411 RRSSSATDDSQD--VSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVES 488 (630)
Q Consensus 411 ~~~Vsa~~~s~d--~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg 488 (630)
....+-..-.+. .+++.+.|.+.|+||... ....+..|+||++.|+++.|..|.+ +++|+.|.+|||||+++-
T Consensus 314 d~ELtHcstHptQrLVvTsSrDtTFRLWDFRe----aI~sV~VFQGHtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNM 388 (481)
T KOG0300|consen 314 DSELTHCSTHPTQRLVVTSSRDTTFRLWDFRE----AIQSVAVFQGHTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNM 388 (481)
T ss_pred chhccccccCCcceEEEEeccCceeEeccchh----hcceeeeecccccceeEEEEecCCc-eeecCCCceEEEeeeccc
Confidence 776654444443 388999999999999862 2346788999999999999998775 899999999999999875
Q ss_pred ceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEe-----
Q 006825 489 ERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSF----- 563 (630)
Q Consensus 489 ~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL----- 563 (630)
...... .....++..++.+..+.+|+.--++..| ++|++.|..+..|
T Consensus 389 RsplAT-----IRtdS~~NRvavs~g~~iIAiPhDNRqv-----------------------RlfDlnG~RlaRlPrtsR 440 (481)
T KOG0300|consen 389 RSPLAT-----IRTDSPANRVAVSKGHPIIAIPHDNRQV-----------------------RLFDLNGNRLARLPRTSR 440 (481)
T ss_pred cCccee-----eecCCccceeEeecCCceEEeccCCceE-----------------------EEEecCCCccccCCcccc
Confidence 432221 2334567788888778888888777777 8999988766655
Q ss_pred ccCCCCEEEEEEcCC---CeEEEEECCCcEEEEeCCC
Q 006825 564 QGHLDDVLDLSWSKS---QHLLSSSMDKTVRLWHLSS 597 (630)
Q Consensus 564 ~GHs~~V~sLafSPd---~~LaSgS~DgtVrIWDl~t 597 (630)
+||...|+|++|..+ .-|++++.|..+.=|.+.+
T Consensus 441 qgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 441 QGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred cccceeeeeeeccccCcccccccccccceeeeeEecc
Confidence 699999999999865 6788999999999998764
No 97
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.83 E-value=4.1e-20 Score=190.80 Aligned_cols=257 Identities=17% Similarity=0.160 Sum_probs=202.3
Q ss_pred eeeecCccceeEEEeec----ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCcccc
Q 006825 333 EMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEK 408 (630)
Q Consensus 333 ~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~ 408 (630)
..|.||..-|.+||..| .++|||.||.|+ +||+++-.++.+++ .|.+.|+.+++.- ..+.+.++|+.....+
T Consensus 60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~Vk-iWnlsqR~~~~~f~-AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVK-IWNLSQRECIRTFK-AHEGLVRGICVTQ--TSFFTVGDDKTVKQWK 135 (433)
T ss_pred hhccccccccchhhcCcchhhhhhccccCceEE-EEehhhhhhhheee-cccCceeeEEecc--cceEEecCCcceeeee
Confidence 66899999999999999 699999999999 99999999999999 9999999999988 6677888887322211
Q ss_pred -----C----CcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccC-CCEEEEEeC
Q 006825 409 -----G----GRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLD-GRYLASAGE 476 (630)
Q Consensus 409 -----g----h~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpD-G~~LASgS~ 476 (630)
- +...+..++..... +++++. .|-|||..-. .+++.+.--...|.++.|+|- ..+|++|+.
T Consensus 136 ~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~-----~Pv~smswG~Dti~svkfNpvETsILas~~s 208 (433)
T KOG0268|consen 136 IDGPPLHTILGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRD-----NPVSSMSWGADSISSVKFNPVETSILASCAS 208 (433)
T ss_pred ccCCcceeeeccccccccccccccccccccCc--eeeecccccC-----CccceeecCCCceeEEecCCCcchheeeecc
Confidence 0 11122222222222 455554 4778887533 246777777889999999995 458899999
Q ss_pred CCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-
Q 006825 477 DCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL- 555 (630)
Q Consensus 477 DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl- 555 (630)
|+.|-|+|++++..+..++.. -.-..|+|+|+.-.++++..|..+ ..||+
T Consensus 209 DrsIvLyD~R~~~Pl~KVi~~------mRTN~IswnPeafnF~~a~ED~nl-----------------------Y~~DmR 259 (433)
T KOG0268|consen 209 DRSIVLYDLRQASPLKKVILT------MRTNTICWNPEAFNFVAANEDHNL-----------------------YTYDMR 259 (433)
T ss_pred CCceEEEecccCCccceeeee------ccccceecCccccceeeccccccc-----------------------eehhhh
Confidence 999999999999888775421 234579999998889999999988 66666
Q ss_pred -CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe--cCCceEEEE-cCCCcEEEEecce-ec
Q 006825 556 -SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYDISLV-DRLMLRFAYGAFL-NV 629 (630)
Q Consensus 556 -sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~--H~~~V~sVa-s~~~~~lAsgs~~-nI 629 (630)
-..++..+.+|...|+++.|+|. +-++|||.|++||||.+..+.-.-++. -...|.||. +.+..++.+|+.+ ||
T Consensus 260 ~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nv 339 (433)
T KOG0268|consen 260 NLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNV 339 (433)
T ss_pred hhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcce
Confidence 45788899999999999999999 999999999999999998876555553 567789999 7788888888755 44
No 98
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.83 E-value=8.4e-18 Score=187.97 Aligned_cols=338 Identities=14% Similarity=0.080 Sum_probs=244.4
Q ss_pred ccccccEEEEECCCCcEEEEeeecCCCceeE---------EEEcCCCceEeee----c-ceeeecCccceeEEEee----
Q 006825 287 GVAEQGCLIKNLDNGKEFVVNEIQEDGTWKK---------VKEVGTGRQLTIE----E-FEMCVGHSPIVQELMRR---- 348 (630)
Q Consensus 287 ~~~~~~~~I~~LddG~~~~v~e~~~dg~~~~---------l~dv~TG~~lt~e----e-f~~l~GHs~~V~~Lafs---- 348 (630)
+...+...|||+..|+++.+.....++.+.. .--..+|+.+.++ + +..+.---+.|++|.|+
T Consensus 178 Gs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~ 257 (910)
T KOG1539|consen 178 GSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGN 257 (910)
T ss_pred eecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCC
Confidence 3566789999999999988755444444211 1111244444221 1 14444335899999998
Q ss_pred cceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-------CC--------ccccCCcce
Q 006825 349 QNVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-------DT--------SSEKGGRRS 413 (630)
Q Consensus 349 ~~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-------dt--------~s~~gh~~~ 413 (630)
|.||+|+.-+.+. +||++..+.+..++..|.+.|...-|-|.-..+++.+.|. |+ .+..||..+
T Consensus 258 p~las~~~~G~m~-~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~P 336 (910)
T KOG1539|consen 258 PLLASGRSNGDMA-FWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAP 336 (910)
T ss_pred eeEEeccCCceEE-EEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCC
Confidence 4899999889999 9999988877777768888888888888777777766665 21 124455555
Q ss_pred EEEeecC-CCe--EEEecCCcEEEEE------------------------------------------------------
Q 006825 414 SSATDDS-QDV--SFHGQERVRVRQY------------------------------------------------------ 436 (630)
Q Consensus 414 Vsa~~~s-~d~--l~Sgs~Dg~VriW------------------------------------------------------ 436 (630)
-.++.|. ..+ +.++..|.+.|.+
T Consensus 337 p~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~ 416 (910)
T KOG1539|consen 337 PSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVIT 416 (910)
T ss_pred chheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeE
Confidence 5555544 222 4555555554444
Q ss_pred -----------eCCCCcccceee-eeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCccc
Q 006825 437 -----------GKSCKDLTALYK-CQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLN 504 (630)
Q Consensus 437 -----------d~~~~el~~~~~-v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~ 504 (630)
+.+.+......+ ...++.-...+++++.++.|++.+-|..-|+|-++++..|-....+. ....|..
T Consensus 417 ~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~--~~~ah~~ 494 (910)
T KOG1539|consen 417 AHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFG--DSPAHKG 494 (910)
T ss_pred EecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccc--cCccccC
Confidence 333322111110 01112223689999999999999999999999999999987666641 1268999
Q ss_pred ceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCcccc------------------ccEEEeC-CCCceEEecc
Q 006825 505 MLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVV------------------PETVFAL-SDKPICSFQG 565 (630)
Q Consensus 505 ~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~------------------~~~Vwdl-sgk~l~tL~G 565 (630)
.|..++...-++.+++++.+|.+++|+..+......+.....+. ...+.|. +.+.++.|.|
T Consensus 495 ~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~g 574 (910)
T KOG1539|consen 495 EVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWG 574 (910)
T ss_pred ceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhc
Confidence 99999999889999999999999999988866554444333221 1145565 7788899999
Q ss_pred CCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEecCCceEEEE-cCCCcEEEEecce
Q 006825 566 HLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYDISLV-DRLMLRFAYGAFL 627 (630)
Q Consensus 566 Hs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~H~~~V~sVa-s~~~~~lAsgs~~ 627 (630)
|.+.|++++|||| ++|+++++|++||+||+.++.++-.+.-..+.+++. +|++-+||+...+
T Consensus 575 h~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd 638 (910)
T KOG1539|consen 575 HGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVD 638 (910)
T ss_pred cccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEec
Confidence 9999999999999 999999999999999999999999998888888888 9999999987543
No 99
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.82 E-value=1.8e-19 Score=183.00 Aligned_cols=214 Identities=15% Similarity=0.196 Sum_probs=171.9
Q ss_pred eeeecCccceeEEEeec---ceEeecCCCccEecccCCC------------C------ceeEEecCCccCCEEEEEEcCC
Q 006825 333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSG------------G------GMKSKKKGSWFKSIRTVASSVT 391 (630)
Q Consensus 333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~t------------G------~~~~~lk~gH~~~V~sVAfSpd 391 (630)
..+..|...+++.+|++ .+|+||.|..|+ +-|+.. | ..++++- .|...|+.+.|.|.
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIK-ildvermlaks~~~em~~~~~qa~hPvIRTlY-DH~devn~l~FHPr 183 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIK-ILDVERMLAKSKPKEMISGDTQARHPVIRTLY-DHVDEVNDLDFHPR 183 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEE-EeehhhhhhhcchhhhccCCcccCCceEeehh-hccCcccceeecch
Confidence 45778999999999999 899999999999 998861 1 1233443 55556666666554
Q ss_pred CCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEE
Q 006825 392 GHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYL 471 (630)
Q Consensus 392 G~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~L 471 (630)
... +++|+.|++|+++|..-......+ ..| ....+|.+|.|+|.|.+|
T Consensus 184 e~I-----------------------------LiS~srD~tvKlFDfsK~saKrA~--K~~-qd~~~vrsiSfHPsGefl 231 (430)
T KOG0640|consen 184 ETI-----------------------------LISGSRDNTVKLFDFSKTSAKRAF--KVF-QDTEPVRSISFHPSGEFL 231 (430)
T ss_pred hhe-----------------------------EEeccCCCeEEEEecccHHHHHHH--HHh-hccceeeeEeecCCCceE
Confidence 332 677888899999998643221111 112 245789999999999999
Q ss_pred EEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccE
Q 006825 472 ASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPET 551 (630)
Q Consensus 472 ASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~ 551 (630)
+.|-+-.++|+||+++-++.... .+..+|...|.++.+++.+++.++++.||.| +
T Consensus 232 lvgTdHp~~rlYdv~T~Qcfvsa--nPd~qht~ai~~V~Ys~t~~lYvTaSkDG~I-----------------------k 286 (430)
T KOG0640|consen 232 LVGTDHPTLRLYDVNTYQCFVSA--NPDDQHTGAITQVRYSSTGSLYVTASKDGAI-----------------------K 286 (430)
T ss_pred EEecCCCceeEEeccceeEeeec--CcccccccceeEEEecCCccEEEEeccCCcE-----------------------E
Confidence 99999999999999998775442 3468999999999999999999999999999 8
Q ss_pred EEeC-CCCceEEec-cCC-CCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825 552 VFAL-SDKPICSFQ-GHL-DDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS 605 (630)
Q Consensus 552 Vwdl-sgk~l~tL~-GHs-~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~ 605 (630)
+|+- +++++.++. .|. ..|.+..|.++ +|++|.++|.+|+||.+.+++++..+.
T Consensus 287 lwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Yt 344 (430)
T KOG0640|consen 287 LWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYT 344 (430)
T ss_pred eeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEe
Confidence 8886 889998885 465 46999999999 999999999999999999999999885
No 100
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.82 E-value=1.6e-19 Score=188.95 Aligned_cols=253 Identities=14% Similarity=0.121 Sum_probs=201.3
Q ss_pred eeecCccceeEEEeec---ceEeecCCCccEecccCCCCc--eeEEecCCccCCEEEEEEcCCCCeEEeecCCC------
Q 006825 334 MCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGG--MKSKKKGSWFKSIRTVASSVTGHKERRSSDER------ 402 (630)
Q Consensus 334 ~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~--~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~------ 402 (630)
.+.-|..-|..+.|-+ .|++|+.|..|+ +|++..++ .+.+|. |-.+.|.++.|.++++++.+.+.|+
T Consensus 170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik-~W~v~~~k~~~~~tLa-Gs~g~it~~d~d~~~~~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIK-LWNVLGEKSELISTLA-GSLGNITSIDFDSDNKHVIAASNDKNLRLWN 247 (459)
T ss_pred hhhccccccceeEEccCcchhhhcchhhhhh-hhhcccchhhhhhhhh-ccCCCcceeeecCCCceEEeecCCCceeeee
Confidence 3455777777777766 799999999999 99998766 667777 8999999999999999888877777
Q ss_pred -----CCccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEe
Q 006825 403 -----DTSSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG 475 (630)
Q Consensus 403 -----dt~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS 475 (630)
....+.||+.-|+++.|.... +++|+.|.+|++||+... +|..++- -...+..|..+ ...++||-
T Consensus 248 vd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~-----~C~kt~l-~~S~cnDI~~~--~~~~~SgH 319 (459)
T KOG0288|consen 248 VDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKA-----YCSKTVL-PGSQCNDIVCS--ISDVISGH 319 (459)
T ss_pred ccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhh-----heecccc-ccccccceEec--ceeeeecc
Confidence 134489999999999998876 899999999999998654 3444332 23345666664 66789999
Q ss_pred CCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC
Q 006825 476 EDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL 555 (630)
Q Consensus 476 ~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl 555 (630)
.|++||.||++........ ..+ +.|.++..++++..+.+++.|.++ .++++
T Consensus 320 ~DkkvRfwD~Rs~~~~~sv-----~~g-g~vtSl~ls~~g~~lLsssRDdtl-----------------------~viDl 370 (459)
T KOG0288|consen 320 FDKKVRFWDIRSADKTRSV-----PLG-GRVTSLDLSMDGLELLSSSRDDTL-----------------------KVIDL 370 (459)
T ss_pred cccceEEEeccCCceeeEe-----ecC-cceeeEeeccCCeEEeeecCCCce-----------------------eeeec
Confidence 9999999999998887774 233 489999999999999999999999 66666
Q ss_pred CCCc-eEEecc----CCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe--cCC-ceEEEE-cCCCcEEEEec
Q 006825 556 SDKP-ICSFQG----HLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS--HSD-YDISLV-DRLMLRFAYGA 625 (630)
Q Consensus 556 sgk~-l~tL~G----Hs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~--H~~-~V~sVa-s~~~~~lAsgs 625 (630)
.+.. .++|.. -...++.+.|||+ .|+++||+||.|+||++.++++...+. +.. .|++++ ++.+..+++++
T Consensus 371 Rt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsad 450 (459)
T KOG0288|consen 371 RTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSAD 450 (459)
T ss_pred ccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhccc
Confidence 4333 333321 1124899999999 999999999999999999999999987 444 799999 77777666554
No 101
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.82 E-value=2.7e-19 Score=187.27 Aligned_cols=240 Identities=17% Similarity=0.166 Sum_probs=191.3
Q ss_pred eEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCC
Q 006825 316 KKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTG 392 (630)
Q Consensus 316 ~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG 392 (630)
..+|++..++ .+-..+|.|-.+.|+.+.|-+ .+.++++|++++ +|++..++.+++|. ||+..|.++.|...-
T Consensus 199 Ik~W~v~~~k---~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r-~Wnvd~~r~~~TLs-GHtdkVt~ak~~~~~ 273 (459)
T KOG0288|consen 199 IKLWNVLGEK---SELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLR-LWNVDSLRLRHTLS-GHTDKVTAAKFKLSH 273 (459)
T ss_pred hhhhhcccch---hhhhhhhhccCCCcceeeecCCCceEEeecCCCcee-eeeccchhhhhhhc-ccccceeeehhhccc
Confidence 3466665555 233478888889999999977 788899999999 99999999999999 899999999999877
Q ss_pred CeEEeecCCC-----CCcc-------ccCC-cceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCE
Q 006825 393 HKERRSSDER-----DTSS-------EKGG-RRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSI 459 (630)
Q Consensus 393 ~~lasgS~D~-----dt~s-------~~gh-~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V 459 (630)
..+++|+.|+ |..+ +.+. ...|.+ ....+++|..|++||+||..... +.++...|. .|
T Consensus 274 ~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~---~~~~~~SgH~DkkvRfwD~Rs~~-----~~~sv~~gg-~v 344 (459)
T KOG0288|consen 274 SRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVC---SISDVISGHFDKKVRFWDIRSAD-----KTRSVPLGG-RV 344 (459)
T ss_pred cceeeccccchhhhhhhhhhheeccccccccccceEe---cceeeeecccccceEEEeccCCc-----eeeEeecCc-ce
Confidence 7799999998 2221 1111 111111 22337899999999999987765 456666665 99
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeeccc-ccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccc
Q 006825 460 WSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQ-EDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINR 538 (630)
Q Consensus 460 ~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~-~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~ 538 (630)
+++..+++|..|.+++.|.++++.|+.+.+....+.... ..+| -++.+.|+|++.|+++|+.||.|
T Consensus 345 tSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~as--DwtrvvfSpd~~YvaAGS~dgsv----------- 411 (459)
T KOG0288|consen 345 TSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCAS--DWTRVVFSPDGSYVAAGSADGSV----------- 411 (459)
T ss_pred eeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccccccc--ccceeEECCCCceeeeccCCCcE-----------
Confidence 999999999999999999999999999877666653221 2233 27789999999999999999999
Q ss_pred cccccCccccccEEEeC-CCCceEEeccCCC--CEEEEEEcCC-CeEEEEECCCcEEEEe
Q 006825 539 KSLSLDHMVVPETVFAL-SDKPICSFQGHLD--DVLDLSWSKS-QHLLSSSMDKTVRLWH 594 (630)
Q Consensus 539 ~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~--~V~sLafSPd-~~LaSgS~DgtVrIWD 594 (630)
+||++ ++++...+...+. .|++++|+|. ..|++++.++.+.||.
T Consensus 412 ------------~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 412 ------------YIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ------------EEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 88998 7888888876554 4999999999 8999999999999993
No 102
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.9e-18 Score=189.25 Aligned_cols=236 Identities=19% Similarity=0.198 Sum_probs=198.4
Q ss_pred CCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-----------CCccccC-CcceEEEeecCCCeE
Q 006825 357 DSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-----------DTSSEKG-GRRSSSATDDSQDVS 424 (630)
Q Consensus 357 D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-----------dt~s~~g-h~~~Vsa~~~s~d~l 424 (630)
...+- +|+..+|....... -+...|.+|.|+++|.+|+.|-.++ .+....+ |...|-+++.....+
T Consensus 196 g~~vy-lW~~~s~~v~~l~~-~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~l 273 (484)
T KOG0305|consen 196 GQSVY-LWSASSGSVTELCS-FGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVL 273 (484)
T ss_pred cceEE-EEecCCCceEEeEe-cCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCceE
Confidence 35566 99999999776666 4489999999999999999998877 2333666 999999999998889
Q ss_pred EEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCccc
Q 006825 425 FHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLN 504 (630)
Q Consensus 425 ~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~ 504 (630)
.+|+.++.|..+|+...+. ...++.+|...|..++|++|+++||+|+.|+.|.|||....+.+.. +..|..
T Consensus 274 ssGsr~~~I~~~dvR~~~~----~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~-----~~~H~a 344 (484)
T KOG0305|consen 274 SSGSRDGKILNHDVRISQH----VVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFT-----FTEHTA 344 (484)
T ss_pred EEecCCCcEEEEEEecchh----hhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEE-----Eeccce
Confidence 9999999999999987653 2335899999999999999999999999999999999976666666 489999
Q ss_pred ceEEEEECCC-CCEEEEe--eCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-C
Q 006825 505 MLLLANGSPE-PTSLSPK--HLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-Q 579 (630)
Q Consensus 505 ~V~svafSpd-g~~lasg--s~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~ 579 (630)
.|..++|+|= ..+||+| +.|++| ++|+. +|+.+..+. -...|..|.|++. +
T Consensus 345 AVKA~awcP~q~~lLAsGGGs~D~~i-----------------------~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~k 400 (484)
T KOG0305|consen 345 AVKALAWCPWQSGLLATGGGSADRCI-----------------------KFWNTNTGARIDSVD-TGSQVCSLIWSKKYK 400 (484)
T ss_pred eeeEeeeCCCccCceEEcCCCcccEE-----------------------EEEEcCCCcEecccc-cCCceeeEEEcCCCC
Confidence 9999999996 5677775 467777 78887 677776665 3467999999998 5
Q ss_pred eEEEEE--CCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcEEEEecce
Q 006825 580 HLLSSS--MDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLRFAYGAFL 627 (630)
Q Consensus 580 ~LaSgS--~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~lAsgs~~ 627 (630)
-|+++. .+..|.||+..+.+.+..+. |...|..++ +|++..+++++.+
T Consensus 401 Ei~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~D 452 (484)
T KOG0305|consen 401 ELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAAD 452 (484)
T ss_pred EEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEeccc
Confidence 555543 37789999999999999998 999999999 9999999999765
No 103
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.82 E-value=4.9e-19 Score=187.35 Aligned_cols=238 Identities=16% Similarity=0.184 Sum_probs=180.5
Q ss_pred eeeecCccceeEEEeec----ceEeecCCCccEecccCCCCceeE----------EecCCccCCEEEEEEcCCCCeEEee
Q 006825 333 EMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGMKS----------KKKGSWFKSIRTVASSVTGHKERRS 398 (630)
Q Consensus 333 ~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~~~----------~lk~gH~~~V~sVAfSpdG~~lasg 398 (630)
...+-|-+-|..+...| .+|+++..+.+. |||..+-..+. +|+ ||.+.=++++|++.-
T Consensus 118 ~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~-Vfd~tk~~s~~~~~~~~~Pdl~L~-gH~~eg~glsWn~~~------ 189 (422)
T KOG0264|consen 118 SQKINHDGEVNRARYMPQNPNIVATKTSSGDVY-VFDYTKHPSKPKASGECRPDLRLK-GHEKEGYGLSWNRQQ------ 189 (422)
T ss_pred EEeccCCccchhhhhCCCCCcEEEecCCCCCEE-EEEeccCCCcccccccCCCceEEE-eeccccccccccccc------
Confidence 44456777788777777 688888899999 99986532222 555 676655555555531
Q ss_pred cCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcc--cceeeeeEecccCcCEEEEEEcc-CCCEEEEEe
Q 006825 399 SDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDL--TALYKCQEIQAHNGSIWSIKFSL-DGRYLASAG 475 (630)
Q Consensus 399 S~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el--~~~~~v~tL~gHt~~V~sVaFSp-DG~~LASgS 475 (630)
...+++++.|.+|.+||+..... ........+.+|...|..++|++ +..+|++++
T Consensus 190 ----------------------~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~ 247 (422)
T KOG0264|consen 190 ----------------------EGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVG 247 (422)
T ss_pred ----------------------ceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeec
Confidence 12278999999999999875543 22345577899999999999999 677999999
Q ss_pred CCCcEEEEECcCC--ceeeeeecccccCcccceEEEEECCC-CCEEEEeeCCCeeeeecccccccccccccCccccccEE
Q 006825 476 EDCVIHVWQVVES--ERKGELLEKQEDGHLNMLLLANGSPE-PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETV 552 (630)
Q Consensus 476 ~DgtIrVWDl~tg--~~~~~l~~~~~~gh~~~V~svafSpd-g~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~V 552 (630)
.|+.+.|||++++ +.... ..+|...|.+++|.|- +.+||+|+.|++| .+
T Consensus 248 dd~~L~iwD~R~~~~~~~~~-----~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV-----------------------~L 299 (422)
T KOG0264|consen 248 DDGKLMIWDTRSNTSKPSHS-----VKAHSAEVNCVAFNPFNEFILATGSADKTV-----------------------AL 299 (422)
T ss_pred CCCeEEEEEcCCCCCCCccc-----ccccCCceeEEEeCCCCCceEEeccCCCcE-----------------------EE
Confidence 9999999999963 22222 4899999999999996 7788899999999 67
Q ss_pred EeC--CCCceEEeccCCCCEEEEEEcCC--CeEEEEECCCcEEEEeCCCCc--------------EEEEEe-cCCceEEE
Q 006825 553 FAL--SDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKT--------------CLKIFS-HSDYDISL 613 (630)
Q Consensus 553 wdl--sgk~l~tL~GHs~~V~sLafSPd--~~LaSgS~DgtVrIWDl~tg~--------------~l~t~~-H~~~V~sV 613 (630)
||+ -.+++++|.+|...|..|.|+|. ..|||++.|+.+.|||+..-. ++.+-. |...|..+
T Consensus 300 wDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~Df 379 (422)
T KOG0264|consen 300 WDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDF 379 (422)
T ss_pred eechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccc
Confidence 777 34689999999999999999998 899999999999999996421 233333 88888888
Q ss_pred E-cCCCcE-EEEeccee
Q 006825 614 V-DRLMLR-FAYGAFLN 628 (630)
Q Consensus 614 a-s~~~~~-lAsgs~~n 628 (630)
. +|..-+ +++.+-+|
T Consensus 380 sWnp~ePW~I~SvaeDN 396 (422)
T KOG0264|consen 380 SWNPNEPWTIASVAEDN 396 (422)
T ss_pred cCCCCCCeEEEEecCCc
Confidence 8 665555 44444433
No 104
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=2.9e-18 Score=182.69 Aligned_cols=227 Identities=18% Similarity=0.200 Sum_probs=181.6
Q ss_pred CCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec----ceEeecCCCccEecccCCCCceeEE
Q 006825 299 DNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGMKSK 374 (630)
Q Consensus 299 ddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~~~~ 374 (630)
.||+.++... +.|. .++.|..+ |.+ +..+.+|+..|..+-|.| .+++|++|++++ +||++++.....
T Consensus 78 ~DG~LlaaGD--~sG~-V~vfD~k~-r~i----LR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k-~~d~s~a~v~~~ 148 (487)
T KOG0310|consen 78 SDGRLLAAGD--ESGH-VKVFDMKS-RVI----LRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVK-YWDLSTAYVQAE 148 (487)
T ss_pred cCCeEEEccC--CcCc-EEEecccc-HHH----HHHHhhccCceeEEEecccCCeEEEecCCCceEE-EEEcCCcEEEEE
Confidence 5676665433 2344 45666444 322 377899999999999999 699999999999 999999988668
Q ss_pred ecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecc
Q 006825 375 KKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQA 454 (630)
Q Consensus 375 lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~g 454 (630)
+. +|++.|++.+|+|... ..+++|+.||+||+||+..... .+.+| .
T Consensus 149 l~-~htDYVR~g~~~~~~~----------------------------hivvtGsYDg~vrl~DtR~~~~----~v~el-n 194 (487)
T KOG0310|consen 149 LS-GHTDYVRCGDISPAND----------------------------HIVVTGSYDGKVRLWDTRSLTS----RVVEL-N 194 (487)
T ss_pred ec-CCcceeEeeccccCCC----------------------------eEEEecCCCceEEEEEeccCCc----eeEEe-c
Confidence 87 9999999999999532 2368999999999999977631 34445 4
Q ss_pred cCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccc
Q 006825 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGR 534 (630)
Q Consensus 455 Ht~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~ 534 (630)
|..+|..|.|-|.|.++||+|. ..|||||+.+|...... ...|...|+|+++..++..|++++-|+.+
T Consensus 195 hg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~----~~~H~KtVTcL~l~s~~~rLlS~sLD~~V------- 262 (487)
T KOG0310|consen 195 HGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTS----MFNHNKTVTCLRLASDSTRLLSGSLDRHV------- 262 (487)
T ss_pred CCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhh----hhcccceEEEEEeecCCceEeecccccce-------
Confidence 9999999999999999999986 57999999977654432 35599999999999999999999999999
Q ss_pred cccccccccCccccccEEEeCC-CCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCC
Q 006825 535 SINRKSLSLDHMVVPETVFALS-DKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSS 597 (630)
Q Consensus 535 ~~~~~s~s~d~~i~~~~Vwdls-gk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~t 597 (630)
++|+.+ -+.++.+. -.++|.+++.+|+ +.++.|-.||.+-+=+...
T Consensus 263 ----------------KVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 263 ----------------KVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREV 310 (487)
T ss_pred ----------------EEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeeeehhhc
Confidence 778763 34555543 6789999999999 9999999999988775443
No 105
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=5.3e-18 Score=172.49 Aligned_cols=256 Identities=10% Similarity=0.037 Sum_probs=195.1
Q ss_pred CccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-------C---C
Q 006825 338 HSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-------D---T 404 (630)
Q Consensus 338 Hs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-------d---t 404 (630)
....|..|.|+| .|+.+|||+++| ++|+.+-..+.+++ |..+|.+++|.++ ..+++|.-|. + .
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslr-lYdv~~~~l~~~~~--~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~ 87 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLR-LYDVPANSLKLKFK--HGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNE 87 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEE-EEeccchhhhhhee--cCCceeeeeccCC-ceEEEeccCceEEEEEecCCcc
Confidence 356789999996 688888999999 99998887777665 8999999999986 5566777665 2 2
Q ss_pred ccccCCcceEEEeecCC--CeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEE
Q 006825 405 SSEKGGRRSSSATDDSQ--DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHV 482 (630)
Q Consensus 405 ~s~~gh~~~Vsa~~~s~--d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrV 482 (630)
...-.|...|.++.... ..+++|+.|.+|++||..... .+-++. ....|+++.. .|..|+.|..|..|.+
T Consensus 88 ~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~-----~~~~~d-~~kkVy~~~v--~g~~LvVg~~~r~v~i 159 (323)
T KOG1036|consen 88 DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV-----VVGTFD-QGKKVYCMDV--SGNRLVVGTSDRKVLI 159 (323)
T ss_pred eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccc-----cccccc-cCceEEEEec--cCCEEEEeecCceEEE
Confidence 23667889999999984 449999999999999987532 222233 2348999987 6778999999999999
Q ss_pred EECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEE
Q 006825 483 WQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICS 562 (630)
Q Consensus 483 WDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~t 562 (630)
||+++.....+. ....-...+.+|++-|.+.-++.++-||.|.+.-..... ...+.-..
T Consensus 160 yDLRn~~~~~q~---reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~------------------~~~skkya 218 (323)
T KOG1036|consen 160 YDLRNLDEPFQR---RESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSE------------------EAQSKKYA 218 (323)
T ss_pred EEcccccchhhh---ccccceeEEEEEEEecCCCceEEEeecceEEEEccCCch------------------HHhhhcee
Confidence 999876544332 124445678899999988888999999988433221100 00122334
Q ss_pred eccCC---------CCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcEEEEecc
Q 006825 563 FQGHL---------DDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLRFAYGAF 626 (630)
Q Consensus 563 L~GHs---------~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~lAsgs~ 626 (630)
|+.|. -+|++|+|+|- +.|+||+.||.|.+||+.+.+.++.|. ....|.+++ +.++..||.+..
T Consensus 219 FkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 219 FKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred EEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 44553 25899999998 999999999999999999999999887 667788888 888888888754
No 106
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.80 E-value=2.5e-18 Score=182.15 Aligned_cols=220 Identities=18% Similarity=0.213 Sum_probs=191.0
Q ss_pred EEecCCccCCEEEEEEcCCCCeEEeecCCC-----------C------C-----------ccc-cCCcceEEEeecCCCe
Q 006825 373 SKKKGSWFKSIRTVASSVTGHKERRSSDER-----------D------T-----------SSE-KGGRRSSSATDDSQDV 423 (630)
Q Consensus 373 ~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-----------d------t-----------~s~-~gh~~~Vsa~~~s~d~ 423 (630)
...+ .|..+|.+||++|+.++..+++.+. + . ... ++|...+.+++.++|+
T Consensus 136 ~~~~-~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 136 RVIG-KHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred eeec-cccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 3444 8999999999999999999888765 0 0 001 3899999999999999
Q ss_pred --EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccC
Q 006825 424 --SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG 501 (630)
Q Consensus 424 --l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~g 501 (630)
+++|..|..|.||+..+.+ .++.|++|.+.|.+++|-.....|++++.|++|+||++.....+.+ +.|
T Consensus 215 kylatgg~d~~v~Iw~~~t~e-----hv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vet-----lyG 284 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLE-----HVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVET-----LYG 284 (479)
T ss_pred cEEEecCCCceEEEecCcccc-----hhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHH-----HhC
Confidence 9999999999999998876 4678999999999999998888999999999999999988776666 489
Q ss_pred cccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCCCeE
Q 006825 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHL 581 (630)
Q Consensus 502 h~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd~~L 581 (630)
|...|..|....-.+.+..|+.|.++ ++|.+..+....|.+|.+.+-|++|-.+..|
T Consensus 285 Hqd~v~~IdaL~reR~vtVGgrDrT~-----------------------rlwKi~eesqlifrg~~~sidcv~~In~~Hf 341 (479)
T KOG0299|consen 285 HQDGVLGIDALSRERCVTVGGRDRTV-----------------------RLWKIPEESQLIFRGGEGSIDCVAFINDEHF 341 (479)
T ss_pred CccceeeechhcccceEEecccccee-----------------------EEEeccccceeeeeCCCCCeeeEEEecccce
Confidence 99999999888888888888899999 7888876677788999999999999988999
Q ss_pred EEEECCCcEEEEeCCCCcEEEEEe--cC---C--------ceEEEE-cCCCcEEEEecc
Q 006825 582 LSSSMDKTVRLWHLSSKTCLKIFS--HS---D--------YDISLV-DRLMLRFAYGAF 626 (630)
Q Consensus 582 aSgS~DgtVrIWDl~tg~~l~t~~--H~---~--------~V~sVa-s~~~~~lAsgs~ 626 (630)
+|||.||.|.||++...+++.+.. |. . +|++|+ .+....+|+|+.
T Consensus 342 vsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~ 400 (479)
T KOG0299|consen 342 VSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSW 400 (479)
T ss_pred eeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCC
Confidence 999999999999999999998886 42 2 899999 888888888874
No 107
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.80 E-value=1.1e-18 Score=190.42 Aligned_cols=238 Identities=18% Similarity=0.185 Sum_probs=176.0
Q ss_pred ceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEE--ecCCccCCEEEEEEcCCCCeEEeecCCCCCcc
Q 006825 332 FEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSK--KKGSWFKSIRTVASSVTGHKERRSSDERDTSS 406 (630)
Q Consensus 332 f~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~--lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s 406 (630)
|....-|-++|-.|.+-| .|++++.|.|+| +||++++++.+. +. ||.+.|+++||.|.
T Consensus 93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r-~Wdvk~s~l~G~~~~~-GH~~SvkS~cf~~~--------------- 155 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIR-PWDVKTSRLVGGRLNL-GHTGSVKSECFMPT--------------- 155 (720)
T ss_pred hcccccccceeEeeccCCCceeEEEccCCceee-eeeeccceeecceeec-ccccccchhhhccC---------------
Confidence 466778999999999999 899999999999 999999998887 66 99999999999996
Q ss_pred ccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCccc--ceee--------------------eeEecccCcCEEE---
Q 006825 407 EKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLT--ALYK--------------------CQEIQAHNGSIWS--- 461 (630)
Q Consensus 407 ~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~--~~~~--------------------v~tL~gHt~~V~s--- 461 (630)
.+..+++|+.|+.|.|||+...... ..++ ++.-++|...|..
T Consensus 156 -------------n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvT 222 (720)
T KOG0321|consen 156 -------------NPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVT 222 (720)
T ss_pred -------------CCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeE
Confidence 3466899999999999998754311 1111 1223456666766
Q ss_pred EEEccCCCEEEEEeC-CCcEEEEECcCCceeeeee---cccccCc---ccceEEEEECCCCCEEEEeeCCCeeeeecccc
Q 006825 462 IKFSLDGRYLASAGE-DCVIHVWQVVESERKGELL---EKQEDGH---LNMLLLANGSPEPTSLSPKHLDNHLEKKRRGR 534 (630)
Q Consensus 462 VaFSpDG~~LASgS~-DgtIrVWDl~tg~~~~~l~---~~~~~gh---~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~ 534 (630)
+-|..|...|||+|. |++|||||+++..+....- ...+.-| ...+.++.....|.++.+.+.|+.|..|+...
T Consensus 223 vv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s 302 (720)
T KOG0321|consen 223 VVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRS 302 (720)
T ss_pred EEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccc
Confidence 667789999999998 9999999998876654321 0111222 23345566655678888877899999998654
Q ss_pred cccc----------------cccccCcccc-------ccEEEeC--CCCceEEeccCCCCEEEEEEcCC--CeEEEEECC
Q 006825 535 SINR----------------KSLSLDHMVV-------PETVFAL--SDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMD 587 (630)
Q Consensus 535 ~~~~----------------~s~s~d~~i~-------~~~Vwdl--sgk~l~tL~GHs~~V~sLafSPd--~~LaSgS~D 587 (630)
.... ...+++...+ ...+|.+ -..+...+.||...|++++|.|. .-+||++.|
T Consensus 303 ~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD 382 (720)
T KOG0321|consen 303 LSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDD 382 (720)
T ss_pred cCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccC
Confidence 2111 1123333322 2367877 34667778999999999999997 788999999
Q ss_pred CcEEEEeCCCCc
Q 006825 588 KTVRLWHLSSKT 599 (630)
Q Consensus 588 gtVrIWDl~tg~ 599 (630)
.+++||++..+-
T Consensus 383 ~~~kiW~l~~~l 394 (720)
T KOG0321|consen 383 FRVKIWRLSNGL 394 (720)
T ss_pred cceEEEeccCch
Confidence 999999996653
No 108
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.80 E-value=2.8e-18 Score=188.72 Aligned_cols=256 Identities=17% Similarity=0.202 Sum_probs=197.0
Q ss_pred eecCccceeEEEeec---ceEeecCCCccEecccCCC--Cc---------------------------------------
Q 006825 335 CVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSG--GG--------------------------------------- 370 (630)
Q Consensus 335 l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~t--G~--------------------------------------- 370 (630)
+.||.+.|.++-+.| .|.|+|.|+++. +|-..+ |-
T Consensus 263 l~GHeDWV~sv~W~p~~~~LLSASaDksmi-iW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h 341 (764)
T KOG1063|consen 263 LMGHEDWVYSVWWHPEGLDLLSASADKSMI-IWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH 341 (764)
T ss_pred hcCcccceEEEEEccchhhheecccCcceE-EEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence 459999999999999 789999999999 994321 10
Q ss_pred ----------eeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCc---------------cccCCcceEEEeecCC-Ce-
Q 006825 371 ----------MKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTS---------------SEKGGRRSSSATDDSQ-DV- 423 (630)
Q Consensus 371 ----------~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~---------------s~~gh~~~Vsa~~~s~-d~- 423 (630)
.......||.+.|+.|+|.|.|.+|.+.+.|..|. -..-|-..++|+++-+ +.
T Consensus 342 lWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~ 421 (764)
T KOG1063|consen 342 LWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQ 421 (764)
T ss_pred EEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCce
Confidence 00111248999999999999999999999887321 1344667788888877 55
Q ss_pred EEEecCCcEEEEEeCCCC--------------c---c----------------c--------------------------
Q 006825 424 SFHGQERVRVRQYGKSCK--------------D---L----------------T-------------------------- 444 (630)
Q Consensus 424 l~Sgs~Dg~VriWd~~~~--------------e---l----------------~-------------------------- 444 (630)
+++|.+...+|+|+..-. + + .
T Consensus 422 FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ 501 (764)
T KOG1063|consen 422 FVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELT 501 (764)
T ss_pred eeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhcc
Confidence 888888899999975410 0 0 0
Q ss_pred ------------ceeeeeEecccCcCEEEEEEccCCCEEEEEeCC-----CcEEEEECcCCceeeeeecccccCcccceE
Q 006825 445 ------------ALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED-----CVIHVWQVVESERKGELLEKQEDGHLNMLL 507 (630)
Q Consensus 445 ------------~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~D-----gtIrVWDl~tg~~~~~l~~~~~~gh~~~V~ 507 (630)
-...++.|.||--.|++++.+|+|++|||+..- -.|+||+..+...++.+ .+|.-.|+
T Consensus 502 ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L-----~~HsLTVT 576 (764)
T KOG1063|consen 502 EPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQEL-----EGHSLTVT 576 (764)
T ss_pred CCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhhee-----cccceEEE
Confidence 001134567899999999999999999999744 35999999888777764 89999999
Q ss_pred EEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEEC
Q 006825 508 LANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSM 586 (630)
Q Consensus 508 svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~ 586 (630)
.++|+||+++|++.+.|.++.+|...+... .......++.|+.-|.+..|+|+ .+|+|+|.
T Consensus 577 ~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~------------------~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSR 638 (764)
T KOG1063|consen 577 RLAFSPDGRYLLSVSRDRTVSLYEVQEDIK------------------DEFRFACLKAHTRIIWDCSWSPDEKYFATASR 638 (764)
T ss_pred EEEECCCCcEEEEeecCceEEeeeeecccc------------------hhhhhccccccceEEEEcccCcccceeEEecC
Confidence 999999999999999999996665433110 00112236789999999999999 88999999
Q ss_pred CCcEEEEeCCCC--cEEEEE---ecCCceEEEE
Q 006825 587 DKTVRLWHLSSK--TCLKIF---SHSDYDISLV 614 (630)
Q Consensus 587 DgtVrIWDl~tg--~~l~t~---~H~~~V~sVa 614 (630)
|++|++|..... +++..+ ++...|+.++
T Consensus 639 DK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~ 671 (764)
T KOG1063|consen 639 DKKVKVWEEPDLRDKYISRFACLKFSLAVTAVA 671 (764)
T ss_pred CceEEEEeccCchhhhhhhhchhccCCceeeEE
Confidence 999999999887 555443 4899999998
No 109
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.80 E-value=1e-18 Score=186.77 Aligned_cols=239 Identities=13% Similarity=0.141 Sum_probs=175.9
Q ss_pred CceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCC----------------ccccCCcceEEEeecCCCe--EEEecCC
Q 006825 369 GGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDT----------------SSEKGGRRSSSATDDSQDV--SFHGQER 430 (630)
Q Consensus 369 G~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt----------------~s~~gh~~~Vsa~~~s~d~--l~Sgs~D 430 (630)
+....+++ +|++.|.++++.|.|.++++|+-|.+. .-.....+.|..+.++..+ ++..+..
T Consensus 157 ~shEi~l~-hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~ 235 (641)
T KOG0772|consen 157 GSHEIQLK-HGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGS 235 (641)
T ss_pred ccceEecc-CCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecC
Confidence 44556677 999999999999999999999998721 1134455667777777766 7777777
Q ss_pred cEEEEEeCCCCccccee-------eeeEecccCcCEEEEEEccCC-CEEEEEeCCCcEEEEECcCCceeeeee-cccccC
Q 006825 431 VRVRQYGKSCKDLTALY-------KCQEIQAHNGSIWSIKFSLDG-RYLASAGEDCVIHVWQVVESERKGELL-EKQEDG 501 (630)
Q Consensus 431 g~VriWd~~~~el~~~~-------~v~tL~gHt~~V~sVaFSpDG-~~LASgS~DgtIrVWDl~tg~~~~~l~-~~~~~g 501 (630)
..++++|-...++.... -...-+||...++|.+|+|+. ..++|++.|+++||||+...+...+++ .....+
T Consensus 236 aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g 315 (641)
T KOG0772|consen 236 AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGG 315 (641)
T ss_pred cceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCC
Confidence 78889987655432111 113447999999999999965 579999999999999998776555544 223345
Q ss_pred cccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCC--CEEEEEEcCC-
Q 006825 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLD--DVLDLSWSKS- 578 (630)
Q Consensus 502 h~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~--~V~sLafSPd- 578 (630)
..-.+..++|++|+++||+|..||.|.+|+.+... .....+.-..|.. .|+||+||++
T Consensus 316 ~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~-------------------v~p~~~vk~AH~~g~~Itsi~FS~dg 376 (641)
T KOG0772|consen 316 KRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRT-------------------VRPVMKVKDAHLPGQDITSISFSYDG 376 (641)
T ss_pred cccCceeeecCCCcchhhhcccCCceeeeecCCcc-------------------cccceEeeeccCCCCceeEEEecccc
Confidence 56678899999999999999999999555432100 0112333457887 8999999999
Q ss_pred CeEEEEECCCcEEEEeCCC-CcEEEEEe---cCCceEEEE-cCCCcEEEEecce
Q 006825 579 QHLLSSSMDKTVRLWHLSS-KTCLKIFS---HSDYDISLV-DRLMLRFAYGAFL 627 (630)
Q Consensus 579 ~~LaSgS~DgtVrIWDl~t-g~~l~t~~---H~~~V~sVa-s~~~~~lAsgs~~ 627 (630)
++|+|=+.|.++|+||++. .++|.++. ..-.-+.++ +|+...+.+|...
T Consensus 377 ~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~ 430 (641)
T KOG0772|consen 377 NYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSA 430 (641)
T ss_pred chhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccc
Confidence 9999999999999999987 56777664 222223344 8888888888643
No 110
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=1.1e-19 Score=200.24 Aligned_cols=191 Identities=17% Similarity=0.201 Sum_probs=167.8
Q ss_pred eeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccC
Q 006825 333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKG 409 (630)
Q Consensus 333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~g 409 (630)
..|.||...|.+|-|.+ .|++|+.+++|+ +||+..++..++|. ||+..+.+|+|+|-|.|.++|
T Consensus 64 ~S~~~hespIeSl~f~~~E~LlaagsasgtiK-~wDleeAk~vrtLt-gh~~~~~sv~f~P~~~~~a~g----------- 130 (825)
T KOG0267|consen 64 TSLTGHESPIESLTFDTSERLLAAGSASGTIK-VWDLEEAKIVRTLT-GHLLNITSVDFHPYGEFFASG----------- 130 (825)
T ss_pred heeeccCCcceeeecCcchhhhcccccCCcee-eeehhhhhhhhhhh-ccccCcceeeeccceEEeccc-----------
Confidence 35899999999999998 899999999999 99999999999999 999999999999998877554
Q ss_pred CcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCc
Q 006825 410 GRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE 489 (630)
Q Consensus 410 h~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~ 489 (630)
+.|..+.+||.+-+. |.+.+++|...|..++|+|+|+++++|++|.+++|||+..|+
T Consensus 131 ------------------Stdtd~~iwD~Rk~G-----c~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk 187 (825)
T KOG0267|consen 131 ------------------STDTDLKIWDIRKKG-----CSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGK 187 (825)
T ss_pred ------------------cccccceehhhhccC-----ceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccc
Confidence 555668999986443 788999999999999999999999999999999999999999
Q ss_pred eeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCC
Q 006825 490 RKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLD 568 (630)
Q Consensus 490 ~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~ 568 (630)
...+ +..|.+.+..+.|+|-.-++++|+.|+++ ++|++ +-+.+........
T Consensus 188 ~~~e-----f~~~e~~v~sle~hp~e~Lla~Gs~d~tv-----------------------~f~dletfe~I~s~~~~~~ 239 (825)
T KOG0267|consen 188 LSKE-----FKSHEGKVQSLEFHPLEVLLAPGSSDRTV-----------------------RFWDLETFEVISSGKPETD 239 (825)
T ss_pred cccc-----cccccccccccccCchhhhhccCCCCcee-----------------------eeeccceeEEeeccCCccC
Confidence 8888 48999999999999999999999999999 67776 3555666666688
Q ss_pred CEEEEEEcCC-CeEEEEECC
Q 006825 569 DVLDLSWSKS-QHLLSSSMD 587 (630)
Q Consensus 569 ~V~sLafSPd-~~LaSgS~D 587 (630)
.|.+++|+|+ ..+++|-.+
T Consensus 240 ~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 240 GVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred CceeeeecCCceeeecCchh
Confidence 8999999999 666666544
No 111
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=1e-18 Score=172.91 Aligned_cols=232 Identities=19% Similarity=0.128 Sum_probs=178.8
Q ss_pred ecCccceeEEE--eec-ceEeecCCCccEecccCCCC---ceeEEecCCccCCEEEEEEcC--CCCeEEeecCCCCCccc
Q 006825 336 VGHSPIVQELM--RRQ-NVEEGNKDSFDLNNNGSSGG---GMKSKKKGSWFKSIRTVASSV--TGHKERRSSDERDTSSE 407 (630)
Q Consensus 336 ~GHs~~V~~La--fs~-~laSgS~D~tvr~vWD~~tG---~~~~~lk~gH~~~V~sVAfSp--dG~~lasgS~D~dt~s~ 407 (630)
.+|...|..+. |.. .||++|.|++|| |..+.+. ..+.+|+ ||.++|..|+|.. -|..
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVk-If~v~~n~~s~ll~~L~-Gh~GPVwqv~wahPk~G~i------------- 72 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVK-IFEVRNNGQSKLLAELT-GHSGPVWKVAWAHPKFGTI------------- 72 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEE-EEEEcCCCCceeeeEec-CCCCCeeEEeecccccCcE-------------
Confidence 35666665433 333 799999999999 9988653 4677898 9999999999975 4433
Q ss_pred cCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccC--CCEEEEEeCCCcEEEEEC
Q 006825 408 KGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLD--GRYLASAGEDCVIHVWQV 485 (630)
Q Consensus 408 ~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpD--G~~LASgS~DgtIrVWDl 485 (630)
|++++.|++|.||.-..+... ..++...|...|++|+|.|. |-.||.|+.||+|.|.+.
T Consensus 73 ----------------LAScsYDgkVIiWke~~g~w~---k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~ 133 (299)
T KOG1332|consen 73 ----------------LASCSYDGKVIIWKEENGRWT---KAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTY 133 (299)
T ss_pred ----------------eeEeecCceEEEEecCCCchh---hhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEE
Confidence 577888999999988777543 45678899999999999994 678999999999999998
Q ss_pred cCC-ceeeeeecccccCcccceEEEEECCC---C-----------CEEEEeeCCCeeeeecccccccccccccCcccccc
Q 006825 486 VES-ERKGELLEKQEDGHLNMLLLANGSPE---P-----------TSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPE 550 (630)
Q Consensus 486 ~tg-~~~~~l~~~~~~gh~~~V~svafSpd---g-----------~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~ 550 (630)
... .-... .....|.-.|.+++|.|. | +.|++|+.|..|
T Consensus 134 ~~~g~w~t~---ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~V----------------------- 187 (299)
T KOG1332|consen 134 DSSGGWTTS---KIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLV----------------------- 187 (299)
T ss_pred cCCCCccch---hhhhccccccceeeecCcCCCccccccCcccccceeeccCCccce-----------------------
Confidence 754 21111 225789999999999986 4 558888888888
Q ss_pred EEEeCCC---CceEEeccCCCCEEEEEEcCC-----CeEEEEECCCcEEEEeCCC--CcEEEEEe--cCCceEEEE-cCC
Q 006825 551 TVFALSD---KPICSFQGHLDDVLDLSWSKS-----QHLLSSSMDKTVRLWHLSS--KTCLKIFS--HSDYDISLV-DRL 617 (630)
Q Consensus 551 ~Vwdlsg---k~l~tL~GHs~~V~sLafSPd-----~~LaSgS~DgtVrIWDl~t--g~~l~t~~--H~~~V~sVa-s~~ 617 (630)
+||..+. +.-++|.+|++.|..++|.|. .+|||+|.||+|.||-... ++...++- -.+.|+.+. +..
T Consensus 188 kiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~s 267 (299)
T KOG1332|consen 188 KIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLS 267 (299)
T ss_pred eeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEecc
Confidence 7777643 555679999999999999996 5899999999999998763 22222332 457788888 777
Q ss_pred CcEEEEecce
Q 006825 618 MLRFAYGAFL 627 (630)
Q Consensus 618 ~~~lAsgs~~ 627 (630)
+..|+.+..+
T Consensus 268 Gn~LaVs~Gd 277 (299)
T KOG1332|consen 268 GNILAVSGGD 277 (299)
T ss_pred ccEEEEecCC
Confidence 8888777554
No 112
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.79 E-value=1.5e-16 Score=162.38 Aligned_cols=261 Identities=11% Similarity=0.010 Sum_probs=175.3
Q ss_pred eeEEEEcCCCceEeeecceeeecCccceeEEEeec---ce-EeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcC
Q 006825 315 WKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NV-EEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSV 390 (630)
Q Consensus 315 ~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~l-aSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSp 390 (630)
...+|+..|++.+ .++.+|.. +..++|+| .+ ++++.|++++ +||..+++.+..+. .+.. +..++|+|
T Consensus 12 ~v~~~d~~t~~~~-----~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~-~~d~~~~~~~~~~~-~~~~-~~~~~~~~ 82 (300)
T TIGR03866 12 TISVIDTATLEVT-----RTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQ-VIDLATGEVIGTLP-SGPD-PELFALHP 82 (300)
T ss_pred EEEEEECCCCceE-----EEEECCCC-CCceEECCCCCEEEEEECCCCeEE-EEECCCCcEEEecc-CCCC-ccEEEECC
Confidence 4567888888876 55555543 56788987 34 6778899999 99999999888776 3433 56799999
Q ss_pred CCCeEEee-cCCC-----CCc--c---ccCCcceEEEeecCCCe--EEEecCCc-EEEEEeCCCCcccceeeeeEecccC
Q 006825 391 TGHKERRS-SDER-----DTS--S---EKGGRRSSSATDDSQDV--SFHGQERV-RVRQYGKSCKDLTALYKCQEIQAHN 456 (630)
Q Consensus 391 dG~~lasg-S~D~-----dt~--s---~~gh~~~Vsa~~~s~d~--l~Sgs~Dg-~VriWd~~~~el~~~~~v~tL~gHt 456 (630)
+|+++..+ ..++ +.. . ...+...+..+.+++++ ++.+..++ .+..|+..+.+. ...+. ..
T Consensus 83 ~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~-----~~~~~-~~ 156 (300)
T TIGR03866 83 NGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEI-----VDNVL-VD 156 (300)
T ss_pred CCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeE-----EEEEE-cC
Confidence 99977544 4444 111 1 01111234556777776 55555553 577788866542 22222 22
Q ss_pred cCEEEEEEccCCCEEE-EEeCCCcEEEEECcCCceeeeeecccccCc--ccceEEEEECCCCCEEEEe-eCCCeeeeecc
Q 006825 457 GSIWSIKFSLDGRYLA-SAGEDCVIHVWQVVESERKGELLEKQEDGH--LNMLLLANGSPEPTSLSPK-HLDNHLEKKRR 532 (630)
Q Consensus 457 ~~V~sVaFSpDG~~LA-SgS~DgtIrVWDl~tg~~~~~l~~~~~~gh--~~~V~svafSpdg~~lasg-s~Dg~I~i~~~ 532 (630)
..+..++|+|+|++|+ ++..++.|++||+.+++.+..+.......+ ......++|+|++++++.+ ..++.+
T Consensus 157 ~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i----- 231 (300)
T TIGR03866 157 QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRV----- 231 (300)
T ss_pred CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeE-----
Confidence 3457899999999885 445699999999999877665421100111 1123468899999985543 345556
Q ss_pred cccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEE-ECCCcEEEEeCCCCcEEEEEecCCc
Q 006825 533 GRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSS-SMDKTVRLWHLSSKTCLKIFSHSDY 609 (630)
Q Consensus 533 ~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSg-S~DgtVrIWDl~tg~~l~t~~H~~~ 609 (630)
.+|+. +++.+..+. +...+.+++|+|+ ++|+++ +.+++|+|||+.+++++..++....
T Consensus 232 ------------------~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~ 292 (300)
T TIGR03866 232 ------------------AVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRL 292 (300)
T ss_pred ------------------EEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccc
Confidence 67777 455554443 4457899999999 788776 5699999999999999999985555
Q ss_pred eEEEE
Q 006825 610 DISLV 614 (630)
Q Consensus 610 V~sVa 614 (630)
.+.|+
T Consensus 293 ~~~~~ 297 (300)
T TIGR03866 293 PWGVV 297 (300)
T ss_pred cceeE
Confidence 57665
No 113
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.79 E-value=2.1e-17 Score=181.59 Aligned_cols=279 Identities=17% Similarity=0.111 Sum_probs=207.9
Q ss_pred eEEEEcCCCceEeeecceeeecCccceeEEEeec--------------ceEeecCCCccEecccCCCCceeEEec-----
Q 006825 316 KKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ--------------NVEEGNKDSFDLNNNGSSGGGMKSKKK----- 376 (630)
Q Consensus 316 ~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~--------------~laSgS~D~tvr~vWD~~tG~~~~~lk----- 376 (630)
..+||++.=..+ -....+.-|+..||.+---| -..+.|.|+||| +||++.+.--.+++
T Consensus 348 lYvWDvrD~~kv--gk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIR-lW~l~~ctnn~vyrRNils 424 (1080)
T KOG1408|consen 348 LYVWDVRDVNKV--GKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIR-LWDLAFCTNNQVYRRNILS 424 (1080)
T ss_pred EEEEeccccccc--cceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEE-Eeecccccccceeecccch
Confidence 356776632221 01124556777777766544 477899999999 99987632111100
Q ss_pred -------------------------------CCccCCEEEEEEcCCCCeEEeecCCC-----------CCccccCCcceE
Q 006825 377 -------------------------------GSWFKSIRTVASSVTGHKERRSSDER-----------DTSSEKGGRRSS 414 (630)
Q Consensus 377 -------------------------------~gH~~~V~sVAfSpdG~~lasgS~D~-----------dt~s~~gh~~~V 414 (630)
-+-.-.|++|+.||+|++||+|...+ .+.....|...|
T Consensus 425 ~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEi 504 (1080)
T KOG1408|consen 425 ANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEI 504 (1080)
T ss_pred hhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheeccccee
Confidence 02233679999999999999886655 233477899999
Q ss_pred EEeecCCCe-----EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCC--CEEEEEeCCCcEEEEECcC
Q 006825 415 SATDDSQDV-----SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDG--RYLASAGEDCVIHVWQVVE 487 (630)
Q Consensus 415 sa~~~s~d~-----l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG--~~LASgS~DgtIrVWDl~t 487 (630)
.|+.++... |++++.|..|++||+.-. ..++++|.+|...|++|+|.-.| ..++|+|.|+.|..--...
T Consensus 505 lcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn----y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk 580 (1080)
T KOG1408|consen 505 LCLEYSFPVLTNKLLASASRDRLIHVYDVKRN----YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQK 580 (1080)
T ss_pred EEEeecCchhhhHhhhhccCCceEEEEecccc----cchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhcc
Confidence 999999765 899999999999998643 34689999999999999999877 7899999999876433322
Q ss_pred CceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEecc-
Q 006825 488 SERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQG- 565 (630)
Q Consensus 488 g~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~G- 565 (630)
......+......-....++.++..|..+++++++.|.+| +||++ +|+..+.|+|
T Consensus 581 ~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrni-----------------------rif~i~sgKq~k~FKgs 637 (1080)
T KOG1408|consen 581 ASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNI-----------------------RIFDIESGKQVKSFKGS 637 (1080)
T ss_pred ccCceeccccccccccceEEEeeeCCCcceEEEEecccce-----------------------EEEeccccceeeeeccc
Confidence 2222222111111123567899999999999999999999 88998 8899999976
Q ss_pred --CCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcEEEEe
Q 006825 566 --HLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLRFAYG 624 (630)
Q Consensus 566 --Hs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~lAsg 624 (630)
|.+..-.|...|. .||++.+.|+++.++|..+|+|+.+.. |...|+.+. .++-..|.+.
T Consensus 638 ~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISv 701 (1080)
T KOG1408|consen 638 RDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISV 701 (1080)
T ss_pred ccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheee
Confidence 6677888899999 999999999999999999999998776 999999999 5554444443
No 114
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.79 E-value=5.6e-18 Score=171.22 Aligned_cols=226 Identities=14% Similarity=0.146 Sum_probs=176.5
Q ss_pred ecCccceeEEEeec----ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCc
Q 006825 336 VGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGR 411 (630)
Q Consensus 336 ~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~ 411 (630)
-||.-.|..+.+-| ...++|.|.|++ |||.+|-+..-.++ ..+.|++-|+||-
T Consensus 98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlK-VWDtnTlQ~a~~F~--me~~VYshamSp~-------------------- 154 (397)
T KOG4283|consen 98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLK-VWDTNTLQEAVDFK--MEGKVYSHAMSPM-------------------- 154 (397)
T ss_pred ccceeeeeeeEEeeecCceeecccccceEE-EeecccceeeEEee--cCceeehhhcChh--------------------
Confidence 47888999999999 688999999999 99999988887776 4567777777773
Q ss_pred ceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCC-EEEEEeCCCcEEEEECcCC-c
Q 006825 412 RSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGR-YLASAGEDCVIHVWQVVES-E 489 (630)
Q Consensus 412 ~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~-~LASgS~DgtIrVWDl~tg-~ 489 (630)
+.+...+++|..+.+||+-|++.+. +.++|.||.+.|.+|.|+|... .|||||.||+||+||++.. .
T Consensus 155 ------a~sHcLiA~gtr~~~VrLCDi~SGs-----~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasg 223 (397)
T KOG4283|consen 155 ------AMSHCLIAAGTRDVQVRLCDIASGS-----FSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASG 223 (397)
T ss_pred ------hhcceEEEEecCCCcEEEEeccCCc-----ceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccc
Confidence 2233447889999999999998885 4689999999999999999655 6899999999999999765 2
Q ss_pred eeeeee---------cccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccc-cc---------cccCccc---
Q 006825 490 RKGELL---------EKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINR-KS---------LSLDHMV--- 547 (630)
Q Consensus 490 ~~~~l~---------~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~-~s---------~s~d~~i--- 547 (630)
+...+- ......|.+.|+.++|+.++.++++++.|..+++|+...+.+. +. ..+.-.+
T Consensus 224 cf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~ 303 (397)
T KOG4283|consen 224 CFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSM 303 (397)
T ss_pred eeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEeec
Confidence 332221 1123578889999999999999999999999999997552221 00 0000000
Q ss_pred -------cc----cEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeC
Q 006825 548 -------VP----ETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHL 595 (630)
Q Consensus 548 -------~~----~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl 595 (630)
.| ..+..+ .+..++.+.+|-..|.|.+|-|+ +.+.+|.+|+.|..|-.
T Consensus 304 ~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 304 DSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred ccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence 00 033444 67889999999999999999999 99999999999999976
No 115
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.78 E-value=2.8e-18 Score=182.74 Aligned_cols=257 Identities=16% Similarity=0.125 Sum_probs=206.5
Q ss_pred eecCccceeEEEeec---ceEeecCCCccEecccCCCCc---eeEEec-CCccCCEEEEEEcCCCCeEEeecCCC-----
Q 006825 335 CVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGG---MKSKKK-GSWFKSIRTVASSVTGHKERRSSDER----- 402 (630)
Q Consensus 335 l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~---~~~~lk-~gH~~~V~sVAfSpdG~~lasgS~D~----- 402 (630)
...|...|-++.++. .+.+|+. +-|+ |||+.... .+..|. ..-...|+++.+.|||+.|..|+.-.
T Consensus 415 tL~HGEvVcAvtIS~~trhVyTgGk-gcVK-VWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiW 492 (705)
T KOG0639|consen 415 TLAHGEVVCAVTISNPTRHVYTGGK-GCVK-VWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIW 492 (705)
T ss_pred hhccCcEEEEEEecCCcceeEecCC-CeEE-EeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeee
Confidence 356999999999887 6777655 7789 99996532 122221 02456799999999999998887633
Q ss_pred CCcc--------ccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEE
Q 006825 403 DTSS--------EKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLA 472 (630)
Q Consensus 403 dt~s--------~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LA 472 (630)
|... +....-...+++.++|. +|+...||.|+|||+.... +++.|+||++.+.||.+++||..|.
T Consensus 493 DLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~-----~VrqfqGhtDGascIdis~dGtklW 567 (705)
T KOG0639|consen 493 DLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT-----LVRQFQGHTDGASCIDISKDGTKLW 567 (705)
T ss_pred eccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce-----eeecccCCCCCceeEEecCCCceee
Confidence 1111 12222244567777776 8999999999999997653 6899999999999999999999999
Q ss_pred EEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEE
Q 006825 473 SAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETV 552 (630)
Q Consensus 473 SgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~V 552 (630)
|||.|.+||.||++++..+.+ ......|+++..+|.+.+++.|-..+.+ .|
T Consensus 568 TGGlDntvRcWDlregrqlqq------hdF~SQIfSLg~cP~~dWlavGMens~v-----------------------ev 618 (705)
T KOG0639|consen 568 TGGLDNTVRCWDLREGRQLQQ------HDFSSQIFSLGYCPTGDWLAVGMENSNV-----------------------EV 618 (705)
T ss_pred cCCCccceeehhhhhhhhhhh------hhhhhhheecccCCCccceeeecccCcE-----------------------EE
Confidence 999999999999998876655 3445789999999999999999888876 44
Q ss_pred EeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEecCCceEEEE-cCCCcEEEEecce
Q 006825 553 FALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYDISLV-DRLMLRFAYGAFL 627 (630)
Q Consensus 553 wdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~H~~~V~sVa-s~~~~~lAsgs~~ 627 (630)
...++..-..+.-|..-|++|.|.+- ++++|.+.|..+..|.+..|.-+...+..+.|.|.. +.+..++++|+..
T Consensus 619 lh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGd 695 (705)
T KOG0639|consen 619 LHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGD 695 (705)
T ss_pred EecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccccCcceeeeeccCceEEEecCCC
Confidence 45566667778889999999999999 999999999999999999999888888999999988 8888899988754
No 116
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=1.4e-17 Score=169.90 Aligned_cols=226 Identities=21% Similarity=0.194 Sum_probs=166.3
Q ss_pred EecCCccCCEEEEEEcCCCCeEEeecCCCC-----C-------------ccccCCcceEEEeecCCCeEEEecCCcEEEE
Q 006825 374 KKKGSWFKSIRTVASSVTGHKERRSSDERD-----T-------------SSEKGGRRSSSATDDSQDVSFHGQERVRVRQ 435 (630)
Q Consensus 374 ~lk~gH~~~V~sVAfSpdG~~lasgS~D~d-----t-------------~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~Vri 435 (630)
.|| ||.+.|.+++||.||++|++.+.|+. + .-+.+|...|.+..++...+++.-...++++
T Consensus 81 ~LK-gH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v 159 (420)
T KOG2096|consen 81 VLK-GHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV 159 (420)
T ss_pred hhh-ccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence 566 99999999999999999999999981 1 1167788888888888888888878889999
Q ss_pred EeCCCCc---ccc----eeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEE
Q 006825 436 YGKSCKD---LTA----LYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLL 508 (630)
Q Consensus 436 Wd~~~~e---l~~----~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~s 508 (630)
|...-++ +.. ......-+.|.-.|..+-..-.+++|+|++.|.+|.||++. |+.+..+ .......+.
T Consensus 160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~i-----dtnq~~n~~ 233 (420)
T KOG2096|consen 160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSI-----DTNQSSNYD 233 (420)
T ss_pred EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeee-----ccccccccc
Confidence 9754221 110 01111224577788888888899999999999999999998 7776664 333344567
Q ss_pred EEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCC-----CceEEeccCCCCEEEEEEcCC-CeEE
Q 006825 509 ANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD-----KPICSFQGHLDDVLDLSWSKS-QHLL 582 (630)
Q Consensus 509 vafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsg-----k~l~tL~GHs~~V~sLafSPd-~~La 582 (630)
.+.+|+|+++++++-.--+++|. .+|.-.| +.+..|+||...|+.++|+|+ ..++
T Consensus 234 aavSP~GRFia~~gFTpDVkVwE-------------------~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~v 294 (420)
T KOG2096|consen 234 AAVSPDGRFIAVSGFTPDVKVWE-------------------PIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAV 294 (420)
T ss_pred eeeCCCCcEEEEecCCCCceEEE-------------------EEeccCcchhhhhhhheeccchhheeeeeeCCCcceeE
Confidence 88999999999988777674443 2222233 356789999999999999999 9999
Q ss_pred EEECCCcEEEEeCCC-------CcEEEEEe---c---CCceEEEE-cCCCcEEEEecc
Q 006825 583 SSSMDKTVRLWHLSS-------KTCLKIFS---H---SDYDISLV-DRLMLRFAYGAF 626 (630)
Q Consensus 583 SgS~DgtVrIWDl~t-------g~~l~t~~---H---~~~V~sVa-s~~~~~lAsgs~ 626 (630)
|.|.||++||||+.- -+.|+++. | ..++ -++ +|.+..||.+..
T Consensus 295 tvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~-RL~lsP~g~~lA~s~g 351 (420)
T KOG2096|consen 295 TVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPV-RLELSPSGDSLAVSFG 351 (420)
T ss_pred EEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCce-EEEeCCCCcEEEeecC
Confidence 999999999999852 23344442 2 2333 455 777777776643
No 117
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.78 E-value=4.5e-18 Score=176.54 Aligned_cols=205 Identities=14% Similarity=0.157 Sum_probs=158.3
Q ss_pred eeeecCccceeEEEeec-----ceEeecCCCccEecccCCC----------------CceeEEecCCccCCEEEEEEcCC
Q 006825 333 EMCVGHSPIVQELMRRQ-----NVEEGNKDSFDLNNNGSSG----------------GGMKSKKKGSWFKSIRTVASSVT 391 (630)
Q Consensus 333 ~~l~GHs~~V~~Lafs~-----~laSgS~D~tvr~vWD~~t----------------G~~~~~lk~gH~~~V~sVAfSpd 391 (630)
...++|.+.|+.+.-++ ..|+=|.-+.|. ||++.. .+.+.++. +|...=++++|||-
T Consensus 145 ~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~-Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~-ghk~EGy~LdWSp~ 222 (440)
T KOG0302|consen 145 MKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQ-VWDLAPHLNALSEPGLEVKDSEFRPLFTFN-GHKGEGYGLDWSPI 222 (440)
T ss_pred ccccccccccceeeecccCCcceeeeecccCcEE-EEEchhhhhhhcCccccccccccCceEEec-ccCccceeeecccc
Confidence 34678888888877665 466667778898 998742 12233333 44444444444441
Q ss_pred CCeEEeecCCCCCccccCCcceEEEeecCCCe-EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccC-CC
Q 006825 392 GHKERRSSDERDTSSEKGGRRSSSATDDSQDV-SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLD-GR 469 (630)
Q Consensus 392 G~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~-l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpD-G~ 469 (630)
..+ +++|.--+.|++|...++... .-.+.|.+|+.+|..|+|||. ..
T Consensus 223 -----------------------------~~g~LlsGDc~~~I~lw~~~~g~W~--vd~~Pf~gH~~SVEDLqWSptE~~ 271 (440)
T KOG0302|consen 223 -----------------------------KTGRLLSGDCVKGIHLWEPSTGSWK--VDQRPFTGHTKSVEDLQWSPTEDG 271 (440)
T ss_pred -----------------------------cccccccCccccceEeeeeccCcee--ecCccccccccchhhhccCCccCc
Confidence 123 677777788999988776532 123568899999999999994 56
Q ss_pred EEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccc
Q 006825 470 YLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVP 549 (630)
Q Consensus 470 ~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~ 549 (630)
.|||||.|++|+|||++.+.....+. ...|..-|..|.|+..-.+|++|+.||++
T Consensus 272 vfaScS~DgsIrIWDiRs~~~~~~~~---~kAh~sDVNVISWnr~~~lLasG~DdGt~---------------------- 326 (440)
T KOG0302|consen 272 VFASCSCDGSIRIWDIRSGPKKAAVS---TKAHNSDVNVISWNRREPLLASGGDDGTL---------------------- 326 (440)
T ss_pred eEEeeecCceEEEEEecCCCccceeE---eeccCCceeeEEccCCcceeeecCCCceE----------------------
Confidence 89999999999999999885443332 37888999999999988899999999999
Q ss_pred cEEEeC----CCCceEEeccCCCCEEEEEEcCC--CeEEEEECCCcEEEEeCC
Q 006825 550 ETVFAL----SDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLS 596 (630)
Q Consensus 550 ~~Vwdl----sgk~l~tL~GHs~~V~sLafSPd--~~LaSgS~DgtVrIWDl~ 596 (630)
+||++ .++++.+|+-|..+|++|.|+|. ..|+.++.|.+|.|||+.
T Consensus 327 -~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 327 -SIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred -EEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence 66766 46899999999999999999996 899999999999999985
No 118
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=1.8e-18 Score=192.02 Aligned_cols=204 Identities=18% Similarity=0.276 Sum_probs=168.0
Q ss_pred ecceEeecCCCccEecccCCC---CceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeE
Q 006825 348 RQNVEEGNKDSFDLNNNGSSG---GGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVS 424 (630)
Q Consensus 348 s~~laSgS~D~tvr~vWD~~t---G~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l 424 (630)
++.||+++.-+.|- +||+.. .+.+..+. .|.+.|.++.|++- .+..+
T Consensus 100 ~NlIAT~s~nG~i~-vWdlnk~~rnk~l~~f~-EH~Rs~~~ldfh~t----------------------------ep~il 149 (839)
T KOG0269|consen 100 SNLIATCSTNGVIS-VWDLNKSIRNKLLTVFN-EHERSANKLDFHST----------------------------EPNIL 149 (839)
T ss_pred hhhheeecCCCcEE-EEecCccccchhhhHhh-hhccceeeeeeccC----------------------------CccEE
Confidence 34689999988888 999977 44555777 89999999999884 34557
Q ss_pred EEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc-CCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcc
Q 006825 425 FHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHL 503 (630)
Q Consensus 425 ~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp-DG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~ 503 (630)
++|++|++|++||++.++ ...++.+....|..|+|+| .+.+++++.+.|.+++||++...+... .+..|.
T Consensus 150 iSGSQDg~vK~~DlR~~~-----S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~----k~~AH~ 220 (839)
T KOG0269|consen 150 ISGSQDGTVKCWDLRSKK-----SKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEK----KLTAHN 220 (839)
T ss_pred EecCCCceEEEEeeeccc-----ccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHH----Hhhccc
Confidence 999999999999998775 3567888899999999999 788999999999999999986653322 158999
Q ss_pred cceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCC---CceEEeccCCCCEEEEEEcCC--
Q 006825 504 NMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD---KPICSFQGHLDDVLDLSWSKS-- 578 (630)
Q Consensus 504 ~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsg---k~l~tL~GHs~~V~sLafSPd-- 578 (630)
++|.++.|+|++.+||+|+.|+.| +||+.++ +++.++. -..+|..|.|-|.
T Consensus 221 GpV~c~nwhPnr~~lATGGRDK~v-----------------------kiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~ 276 (839)
T KOG0269|consen 221 GPVLCLNWHPNREWLATGGRDKMV-----------------------KIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARS 276 (839)
T ss_pred CceEEEeecCCCceeeecCCCccE-----------------------EEEeccCCCccceeEEe-ecceeeeeeeccCcc
Confidence 999999999999999999999999 7888753 2333332 3467999999998
Q ss_pred CeEEEEEC--CCcEEEEeCCCC-cEEEEEe-cCCceEEEE
Q 006825 579 QHLLSSSM--DKTVRLWHLSSK-TCLKIFS-HSDYDISLV 614 (630)
Q Consensus 579 ~~LaSgS~--DgtVrIWDl~tg-~~l~t~~-H~~~V~sVa 614 (630)
.+|+++++ |-.|+|||++-. -+..+|. |.+.|+.++
T Consensus 277 ~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~ 316 (839)
T KOG0269|consen 277 YHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIA 316 (839)
T ss_pred chhhhhhccccceEEEEeeccccccceeeeccCcccccee
Confidence 67888876 889999999764 4567777 999999999
No 119
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=1.2e-18 Score=193.50 Aligned_cols=204 Identities=20% Similarity=0.235 Sum_probs=166.5
Q ss_pred eeeecCccceeEEEeec----ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCcccc
Q 006825 333 EMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEK 408 (630)
Q Consensus 333 ~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~ 408 (630)
..|..|+..|.+|.|++ +|+|||.|++|+ +||+....-..++. +-...|+.|+|+|.-
T Consensus 127 ~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK-~~DlR~~~S~~t~~-~nSESiRDV~fsp~~---------------- 188 (839)
T KOG0269|consen 127 TVFNEHERSANKLDFHSTEPNILISGSQDGTVK-CWDLRSKKSKSTFR-SNSESIRDVKFSPGY---------------- 188 (839)
T ss_pred hHhhhhccceeeeeeccCCccEEEecCCCceEE-EEeeeccccccccc-ccchhhhceeeccCC----------------
Confidence 56788999999999987 799999999999 99999999999998 899999999999941
Q ss_pred CCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCC
Q 006825 409 GGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVES 488 (630)
Q Consensus 409 gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg 488 (630)
++.++++.+.|.+++||++..+. +...|.+|.++|.|+.|+|++.+|||||.|++|||||+.+.
T Consensus 189 ------------~~~F~s~~dsG~lqlWDlRqp~r----~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~ 252 (839)
T KOG0269|consen 189 ------------GNKFASIHDSGYLQLWDLRQPDR----CEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDS 252 (839)
T ss_pred ------------CceEEEecCCceEEEeeccCchh----HHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCC
Confidence 23367788889999999976643 45568999999999999999999999999999999999866
Q ss_pred ceeeeeecccccCcccceEEEEECCCCC-EEEEee--CCCeeeeecccccccccccccCccccccEEEeCCC--CceEEe
Q 006825 489 ERKGELLEKQEDGHLNMLLLANGSPEPT-SLSPKH--LDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD--KPICSF 563 (630)
Q Consensus 489 ~~~~~l~~~~~~gh~~~V~svafSpdg~-~lasgs--~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsg--k~l~tL 563 (630)
+..... ......+|..|.|-|+-. .|++++ .|..| .||++.. -+.++|
T Consensus 253 ~~~~~~----tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV-----------------------~VWDvrRPYIP~~t~ 305 (839)
T KOG0269|consen 253 RAKPKH----TINTIAPVGRVKWRPARSYHLATCSMVVDTSV-----------------------HVWDVRRPYIPYATF 305 (839)
T ss_pred Ccccee----EEeecceeeeeeeccCccchhhhhhccccceE-----------------------EEEeeccccccceee
Confidence 544332 133446788999999854 455543 34455 7888854 467889
Q ss_pred ccCCCCEEEEEEcC-C-CeEEEEECCCcEEEEeCCC
Q 006825 564 QGHLDDVLDLSWSK-S-QHLLSSSMDKTVRLWHLSS 597 (630)
Q Consensus 564 ~GHs~~V~sLafSP-d-~~LaSgS~DgtVrIWDl~t 597 (630)
..|+..|+.++|-. | ..|.+++.|++|..-..+.
T Consensus 306 ~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 306 LEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKN 341 (839)
T ss_pred eccCccccceeccCCCceeeEeecCccHHHHhhhhc
Confidence 99999999999965 4 8899999999987655443
No 120
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=7.4e-18 Score=166.88 Aligned_cols=238 Identities=19% Similarity=0.198 Sum_probs=173.9
Q ss_pred CcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec-----ceEeecCCCccEecccCCCCce--eE
Q 006825 301 GKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ-----NVEEGNKDSFDLNNNGSSGGGM--KS 373 (630)
Q Consensus 301 G~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~-----~laSgS~D~tvr~vWD~~tG~~--~~ 373 (630)
|+++++..- |++ .++.++..+.+. ..+.+|.||+++|++++|.. .|||.|.|+.|. ||.-.+|+- ..
T Consensus 23 gkrlATcsS--D~t-VkIf~v~~n~~s--~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVI-iWke~~g~w~k~~ 96 (299)
T KOG1332|consen 23 GKRLATCSS--DGT-VKIFEVRNNGQS--KLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVI-IWKEENGRWTKAY 96 (299)
T ss_pred cceeeeecC--Ccc-EEEEEEcCCCCc--eeeeEecCCCCCeeEEeecccccCcEeeEeecCceEE-EEecCCCchhhhh
Confidence 445444332 444 445555533321 11378999999999999964 899999999999 999888853 33
Q ss_pred EecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEec
Q 006825 374 KKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQ 453 (630)
Q Consensus 374 ~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~ 453 (630)
... .|..+|++|+|.|.+.- -.|+.++.||+|.+.+..... .........
T Consensus 97 e~~-~h~~SVNsV~wapheyg---------------------------l~LacasSDG~vsvl~~~~~g--~w~t~ki~~ 146 (299)
T KOG1332|consen 97 EHA-AHSASVNSVAWAPHEYG---------------------------LLLACASSDGKVSVLTYDSSG--GWTTSKIVF 146 (299)
T ss_pred hhh-hhcccceeecccccccc---------------------------eEEEEeeCCCcEEEEEEcCCC--Cccchhhhh
Confidence 444 89999999999996431 126888899999998876541 112334578
Q ss_pred ccCcCEEEEEEccC---C-----------CEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCC----C
Q 006825 454 AHNGSIWSIKFSLD---G-----------RYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE----P 515 (630)
Q Consensus 454 gHt~~V~sVaFSpD---G-----------~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpd----g 515 (630)
+|.-.|++++|.|- | +.|+|||.|..|+||....+.-+.+ ..+.+|...|..++|.|. -
T Consensus 147 aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e---~~l~~H~dwVRDVAwaP~~gl~~ 223 (299)
T KOG1332|consen 147 AHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLE---RTLEGHKDWVRDVAWAPSVGLPK 223 (299)
T ss_pred ccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhh---hhhhhcchhhhhhhhccccCCCc
Confidence 89999999999995 5 6799999999999999988732222 236899999999999997 3
Q ss_pred CEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEe
Q 006825 516 TSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWH 594 (630)
Q Consensus 516 ~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWD 594 (630)
.+|++++.|+++-+|...... .......|+.....+..+.||+. ++|+.++.|+.|.+|.
T Consensus 224 s~iAS~SqDg~viIwt~~~e~-------------------e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 224 STIASCSQDGTVIIWTKDEEY-------------------EPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred eeeEEecCCCcEEEEEecCcc-------------------CcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 679999999999554432100 00111223335577999999999 8999999999999997
Q ss_pred CC
Q 006825 595 LS 596 (630)
Q Consensus 595 l~ 596 (630)
-.
T Consensus 285 e~ 286 (299)
T KOG1332|consen 285 EN 286 (299)
T ss_pred eC
Confidence 54
No 121
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=7e-17 Score=158.24 Aligned_cols=229 Identities=17% Similarity=0.147 Sum_probs=181.8
Q ss_pred ceeeecCccceeEEEeec---ceEeecCCCccEecccCC--CCce---eEEecCCccCCEEEEEEcCC----CCeEEeec
Q 006825 332 FEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSS--GGGM---KSKKKGSWFKSIRTVASSVT----GHKERRSS 399 (630)
Q Consensus 332 f~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~--tG~~---~~~lk~gH~~~V~sVAfSpd----G~~lasgS 399 (630)
+.+-..|.+.|.+.+++| .+|+||+|++|+ +--.+ |... -..+. .|.+.|+.+||-.+ |..|++++
T Consensus 82 ~kr~khhkgsiyc~~ws~~geliatgsndk~ik-~l~fn~dt~~~~g~dle~n-mhdgtirdl~fld~~~s~~~il~s~g 159 (350)
T KOG0641|consen 82 CKRNKHHKGSIYCTAWSPCGELIATGSNDKTIK-VLPFNADTCNATGHDLEFN-MHDGTIRDLAFLDDPESGGAILASAG 159 (350)
T ss_pred eeeccccCccEEEEEecCccCeEEecCCCceEE-EEecccccccccCcceeee-ecCCceeeeEEecCCCcCceEEEecC
Confidence 566778999999999999 899999999999 54332 2221 22455 79999999999753 45677765
Q ss_pred CCC--------CC----ccccCCcceEEEe-ecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecc--c-----CcCE
Q 006825 400 DER--------DT----SSEKGGRRSSSAT-DDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQA--H-----NGSI 459 (630)
Q Consensus 400 ~D~--------dt----~s~~gh~~~Vsa~-~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~g--H-----t~~V 459 (630)
... .+ ..+.||+.-|.++ .++...+++|++|.+||+||+.... ++.++.. | ..+|
T Consensus 160 agdc~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~-----~v~~l~~~~~~~glessav 234 (350)
T KOG0641|consen 160 AGDCKIYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNS-----CVNTLDNDFHDGGLESSAV 234 (350)
T ss_pred CCcceEEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccc-----eeeeccCcccCCCccccee
Confidence 443 11 2277888777664 5666669999999999999986542 4554432 2 3679
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccccccccc
Q 006825 460 WSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRK 539 (630)
Q Consensus 460 ~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~ 539 (630)
.+++..|.|++|++|-.|..+.+||++.+..++. +..|...|.++.|+|...++++++.|..|
T Consensus 235 aav~vdpsgrll~sg~~dssc~lydirg~r~iq~-----f~phsadir~vrfsp~a~yllt~syd~~i------------ 297 (350)
T KOG0641|consen 235 AAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQR-----FHPHSADIRCVRFSPGAHYLLTCSYDMKI------------ 297 (350)
T ss_pred EEEEECCCcceeeeccCCCceEEEEeeCCceeee-----eCCCccceeEEEeCCCceEEEEecccceE------------
Confidence 9999999999999999999999999999988887 47899999999999999999999999999
Q ss_pred ccccCccccccEEEeCCCC-----ceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeC
Q 006825 540 SLSLDHMVVPETVFALSDK-----PICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHL 595 (630)
Q Consensus 540 s~s~d~~i~~~~Vwdlsgk-----~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl 595 (630)
++-++.|. ++.....|.+.+..+.|+|. --+++.|.|+|+.+|-+
T Consensus 298 -----------kltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 298 -----------KLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWAL 348 (350)
T ss_pred -----------EEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEecc
Confidence 55555443 34455679999999999998 67889999999999965
No 122
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=2.8e-17 Score=167.72 Aligned_cols=271 Identities=13% Similarity=0.032 Sum_probs=191.1
Q ss_pred ceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCce------eEEecCCccCCEEEEEEcCCCCeEEeecCCC
Q 006825 332 FEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGM------KSKKKGSWFKSIRTVASSVTGHKERRSSDER 402 (630)
Q Consensus 332 f~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~------~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~ 402 (630)
...|.||...|+.|+|+. .||+.+.|++|| +|++.--+. ...+..+| -+.|+|+||-+-++-.-..+
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir-~w~~~DF~~~eHr~~R~nve~dh---pT~V~FapDc~s~vv~~~~g 154 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIR-LWDVRDFENKEHRCIRQNVEYDH---PTRVVFAPDCKSVVVSVKRG 154 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEE-EEecchhhhhhhhHhhccccCCC---ceEEEECCCcceEEEEEccC
Confidence 357899999999999998 899999999999 999875332 12222233 35689999877544332211
Q ss_pred ------------C------------CccccCCcceEEEeec--CCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccC
Q 006825 403 ------------D------------TSSEKGGRRSSSATDD--SQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHN 456 (630)
Q Consensus 403 ------------d------------t~s~~gh~~~Vsa~~~--s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt 456 (630)
| ....+-|+..+..+-. ....+.+++.|.+|.+|+.+.. .++++....
T Consensus 155 ~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq------~L~~idtnq 228 (420)
T KOG2096|consen 155 NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQ------LLQSIDTNQ 228 (420)
T ss_pred CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCc------eeeeecccc
Confidence 1 1124445555554433 3334899999999999999843 356666667
Q ss_pred cCEEEEEEccCCCEEEEEeCCCcEEEEECc---CCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccc
Q 006825 457 GSIWSIKFSLDGRYLASAGEDCVIHVWQVV---ESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRG 533 (630)
Q Consensus 457 ~~V~sVaFSpDG~~LASgS~DgtIrVWDl~---tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~ 533 (630)
..-+..+.||+|++||+++.---|+||.+- .|..........+.||...|..++|+++.+.+++.+.||++++|+..
T Consensus 229 ~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 229 SSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred ccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence 777888999999999999999999999873 22211111122358999999999999999999999999999777653
Q ss_pred ccccccccccCccccccEEEeCCCCceEEe----ccCCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEe--cC
Q 006825 534 RSINRKSLSLDHMVVPETVFALSDKPICSF----QGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS--HS 607 (630)
Q Consensus 534 ~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL----~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~l~t~~--H~ 607 (630)
-... ... ..+.+++. ..-...-..|+++|.+.++..+.-.+++++..++|+.+-+++ |.
T Consensus 309 VrY~---~~q------------Dpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~ 373 (420)
T KOG2096|consen 309 VRYE---AGQ------------DPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHS 373 (420)
T ss_pred ceEe---cCC------------CchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhc
Confidence 2100 000 11122221 122223347899999545555556789999999999998887 99
Q ss_pred CceEEEE-cCCCcEEEEecce
Q 006825 608 DYDISLV-DRLMLRFAYGAFL 627 (630)
Q Consensus 608 ~~V~sVa-s~~~~~lAsgs~~ 627 (630)
..|.||+ ++++.++++-+.-
T Consensus 374 ~~Is~is~~~~g~~~atcGdr 394 (420)
T KOG2096|consen 374 TTISSISYSSDGKYIATCGDR 394 (420)
T ss_pred CceeeEEecCCCcEEeeecce
Confidence 9999999 9999999887643
No 123
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.77 E-value=4.6e-17 Score=166.09 Aligned_cols=226 Identities=14% Similarity=0.192 Sum_probs=179.5
Q ss_pred eEEEEcCCCceEeeecceeeecCccceeEEEeec-----ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcC
Q 006825 316 KKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ-----NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSV 390 (630)
Q Consensus 316 ~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~-----~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSp 390 (630)
..+.|..+..++ ..+..|++.|++|.|.+ .|.+|+.|+.|. +|++..=+++..++ +|.+.|+.++..|
T Consensus 65 I~IYDm~k~~ql-----g~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~-iw~~~~W~~~~slK-~H~~~Vt~lsiHP 137 (362)
T KOG0294|consen 65 IHIYDMRKRKQL-----GILLSHAGSITALKFYPPLSKSHLLSGSDDGHII-IWRVGSWELLKSLK-AHKGQVTDLSIHP 137 (362)
T ss_pred EEEEeccchhhh-----cceeccccceEEEEecCCcchhheeeecCCCcEE-EEEcCCeEEeeeec-ccccccceeEecC
Confidence 457777777777 88999999999999987 699999999999 99999999999999 9999999999999
Q ss_pred CCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCE
Q 006825 391 TGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRY 470 (630)
Q Consensus 391 dG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~ 470 (630)
.|++. ++.+.|..+|+|++-.+... + +..|+ |.. .-|.|+|.|.+
T Consensus 138 S~KLA-----------------------------LsVg~D~~lr~WNLV~Gr~a--~-v~~L~-~~a--t~v~w~~~Gd~ 182 (362)
T KOG0294|consen 138 SGKLA-----------------------------LSVGGDQVLRTWNLVRGRVA--F-VLNLK-NKA--TLVSWSPQGDH 182 (362)
T ss_pred CCceE-----------------------------EEEcCCceeeeehhhcCccc--e-eeccC-Ccc--eeeEEcCCCCE
Confidence 98754 45667889999998766432 1 11222 222 23999999999
Q ss_pred EEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCcccccc
Q 006825 471 LASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPE 550 (630)
Q Consensus 471 LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~ 550 (630)
++.++.+ .|-||.+.+.....++. ....+.++.|- ++..+++|..++.|
T Consensus 183 F~v~~~~-~i~i~q~d~A~v~~~i~------~~~r~l~~~~l-~~~~L~vG~d~~~i----------------------- 231 (362)
T KOG0294|consen 183 FVVSGRN-KIDIYQLDNASVFREIE------NPKRILCATFL-DGSELLVGGDNEWI----------------------- 231 (362)
T ss_pred EEEEecc-EEEEEecccHhHhhhhh------ccccceeeeec-CCceEEEecCCceE-----------------------
Confidence 9888876 58999998766554431 11345566665 56678888899988
Q ss_pred EEEeC-CCCceEEeccCCCCEEEEEEc--CC-CeEEEEECCCcEEEEeCCCC-----cEEEEEecCCceEEEE
Q 006825 551 TVFAL-SDKPICSFQGHLDDVLDLSWS--KS-QHLLSSSMDKTVRLWHLSSK-----TCLKIFSHSDYDISLV 614 (630)
Q Consensus 551 ~Vwdl-sgk~l~tL~GHs~~V~sLafS--Pd-~~LaSgS~DgtVrIWDl~tg-----~~l~t~~H~~~V~sVa 614 (630)
.+||. +..++..|.+|...|.++.+- |. .+|+|+|.||.|+|||++.. +++..+.-+..++|+.
T Consensus 232 ~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~~~RltCl~ 304 (362)
T KOG0294|consen 232 SLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNTNVRLTCLR 304 (362)
T ss_pred EEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEeecCCccceee
Confidence 78887 488999999999999999964 44 79999999999999999876 5666666677778877
No 124
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.74 E-value=9.1e-17 Score=166.95 Aligned_cols=264 Identities=16% Similarity=0.150 Sum_probs=184.9
Q ss_pred cccEEEEECCCCcEEEEeeecCCCceeEEEEcCC-----------CceEeeecceeeecCccceeEEEeec----ceEee
Q 006825 290 EQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGT-----------GRQLTIEEFEMCVGHSPIVQELMRRQ----NVEEG 354 (630)
Q Consensus 290 ~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~T-----------G~~lt~eef~~l~GHs~~V~~Lafs~----~laSg 354 (630)
....|||.-.-|++.+...+.+.|. +.+|+.+. ......+++.++.||..--..|.|+| .|+||
T Consensus 152 g~~NRvr~~~~~~~~~~aswse~G~-V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsG 230 (440)
T KOG0302|consen 152 GGINRVRVSRLGNEVLCASWSENGR-VQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSG 230 (440)
T ss_pred cccceeeecccCCcceeeeecccCc-EEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccC
Confidence 3455666655556666655555554 33555431 11123456688999999999999999 58888
Q ss_pred cCCCccEecccCCCCceeE---EecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCc
Q 006825 355 NKDSFDLNNNGSSGGGMKS---KKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERV 431 (630)
Q Consensus 355 S~D~tvr~vWD~~tG~~~~---~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg 431 (630)
-.-+.++ +|-..+|.... -+. +|.++|-.++|||.-. .++++++-|+
T Consensus 231 Dc~~~I~-lw~~~~g~W~vd~~Pf~-gH~~SVEDLqWSptE~----------------------------~vfaScS~Dg 280 (440)
T KOG0302|consen 231 DCVKGIH-LWEPSTGSWKVDQRPFT-GHTKSVEDLQWSPTED----------------------------GVFASCSCDG 280 (440)
T ss_pred ccccceE-eeeeccCceeecCcccc-ccccchhhhccCCccC----------------------------ceEEeeecCc
Confidence 8889999 99999987543 344 8999999999999532 3478999999
Q ss_pred EEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEE
Q 006825 432 RVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANG 511 (630)
Q Consensus 432 ~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svaf 511 (630)
+|||||++.+.-.. + ...++|.+-|+.|.|+..-.+||+|+.||+++|||+++.+.-. ....+..|..+|++|.|
T Consensus 281 sIrIWDiRs~~~~~--~-~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~--pVA~fk~Hk~pItsieW 355 (440)
T KOG0302|consen 281 SIRIWDIRSGPKKA--A-VSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQ--PVATFKYHKAPITSIEW 355 (440)
T ss_pred eEEEEEecCCCccc--e-eEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCC--cceeEEeccCCeeEEEe
Confidence 99999998763221 2 2349999999999999988899999999999999998654321 12336899999999999
Q ss_pred CCC-CCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC--CeEEEEECCC
Q 006825 512 SPE-PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDK 588 (630)
Q Consensus 512 Spd-g~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd--~~LaSgS~Dg 588 (630)
+|. ...|++++.|.+|.+|+...............- .+-++.-+++..-+|. ..|..|.|++. ++|+|.+.||
T Consensus 356 ~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~---~L~dlPpQLLFVHqGQ-ke~KevhWH~QiPG~lvsTa~dG 431 (440)
T KOG0302|consen 356 HPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAE---GLQDLPPQLLFVHQGQ-KEVKEVHWHRQIPGLLVSTAIDG 431 (440)
T ss_pred ccccCceEEeccCCCcEEEEEeeccCChhhhcccccc---chhcCCceeEEEecch-hHhhhheeccCCCCeEEEecccc
Confidence 986 667788889999988876542221111000000 1112222333333332 46889999998 9999999998
Q ss_pred cEEEEe
Q 006825 589 TVRLWH 594 (630)
Q Consensus 589 tVrIWD 594 (630)
+.||.
T Consensus 432 -fnVfk 436 (440)
T KOG0302|consen 432 -FNVFK 436 (440)
T ss_pred -eeEEE
Confidence 45554
No 125
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=6.9e-16 Score=157.13 Aligned_cols=268 Identities=15% Similarity=0.176 Sum_probs=197.9
Q ss_pred ecCccceeEEEeec---ceEeecCCCccEecccCCC--Cc--eeEEecCCccCCEEEEEEcC--CCCeEEeecCCC----
Q 006825 336 VGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSG--GG--MKSKKKGSWFKSIRTVASSV--TGHKERRSSDER---- 402 (630)
Q Consensus 336 ~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~t--G~--~~~~lk~gH~~~V~sVAfSp--dG~~lasgS~D~---- 402 (630)
.||.+.|.++.|-+ .+|++|.|.+++ |||... |. +-...+ .|.+.|..|+|.+ -|+.+|+.+.|+
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vk-I~d~~~~s~~W~~Ts~Wr-ah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVK-IWDSTSDSGTWSCTSSWR-AHDGSIWRVVWAHPEFGQVVATCSYDRTVSI 87 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEE-EEeccCCCCceEEeeeEE-ecCCcEEEEEecCccccceEEEEecCCceee
Confidence 58999999999988 799999999999 999643 33 445666 8999999999886 689999999998
Q ss_pred --C-Cc-------------cccCCcceEEEeecCCCe----EEEecCCcEEEEEeCCC-CcccceeeeeEec-------c
Q 006825 403 --D-TS-------------SEKGGRRSSSATDDSQDV----SFHGQERVRVRQYGKSC-KDLTALYKCQEIQ-------A 454 (630)
Q Consensus 403 --d-t~-------------s~~gh~~~Vsa~~~s~d~----l~Sgs~Dg~VriWd~~~-~el~~~~~v~tL~-------g 454 (630)
+ .. ++.+.+..|..+.|.+.. +++.+.||.+|||+.-. .++....+.++++ .
T Consensus 88 WEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~ 167 (361)
T KOG2445|consen 88 WEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGK 167 (361)
T ss_pred eeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccc
Confidence 1 11 155566778888888754 89999999999998643 3444444555555 6
Q ss_pred cCcCEEEEEEcc---CCCEEEEEeCC-----CcEEEEECcCCceeeeeecccccCcccceEEEEECCC----CCEEEEee
Q 006825 455 HNGSIWSIKFSL---DGRYLASAGED-----CVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE----PTSLSPKH 522 (630)
Q Consensus 455 Ht~~V~sVaFSp---DG~~LASgS~D-----gtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpd----g~~lasgs 522 (630)
|..+..||.|+| ...+||.|+.+ +.++||......+.... ...+.+|..+|+.++|.|. -.+||+++
T Consensus 168 ~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~k-va~L~d~~dpI~di~wAPn~Gr~y~~lAvA~ 246 (361)
T KOG2445|consen 168 NKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLK-VAELPDHTDPIRDISWAPNIGRSYHLLAVAT 246 (361)
T ss_pred ccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeee-ehhcCCCCCcceeeeeccccCCceeeEEEee
Confidence 888999999998 35688888876 57999988665432221 2334799999999999997 35788999
Q ss_pred CCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCC---C
Q 006825 523 LDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSS---K 598 (630)
Q Consensus 523 ~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~t---g 598 (630)
.|| |++|......... ..+....+..+.++.-+.+..|.+|..+|..+.|+-. ..|+|.+.||+||+|...- .
T Consensus 247 kDg-v~I~~v~~~~s~i--~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~ 323 (361)
T KOG2445|consen 247 KDG-VRIFKVKVARSAI--EEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLW 323 (361)
T ss_pred cCc-EEEEEEeeccchh--hhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhh
Confidence 999 8777765311110 1111112223344444677789999999999999887 8889999999999998753 4
Q ss_pred cEEEEEecCCc
Q 006825 599 TCLKIFSHSDY 609 (630)
Q Consensus 599 ~~l~t~~H~~~ 609 (630)
+|+..++-...
T Consensus 324 kC~sv~~~e~~ 334 (361)
T KOG2445|consen 324 KCTSVLKAEGS 334 (361)
T ss_pred eeeeEEeccCC
Confidence 67777763333
No 126
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.72 E-value=4.8e-15 Score=151.19 Aligned_cols=235 Identities=12% Similarity=0.038 Sum_probs=164.7
Q ss_pred eEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeE-EeecCCC-----C--Ccc----ccCCcceEEEee
Q 006825 351 VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKE-RRSSDER-----D--TSS----EKGGRRSSSATD 418 (630)
Q Consensus 351 laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~l-asgS~D~-----d--t~s----~~gh~~~Vsa~~ 418 (630)
+++++.|++++ +||..+++.+.++. +|. .+.+++|+|+|+++ +++..+. + +.. ...+.. +..+.
T Consensus 4 ~~s~~~d~~v~-~~d~~t~~~~~~~~-~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~ 79 (300)
T TIGR03866 4 YVSNEKDNTIS-VIDTATLEVTRTFP-VGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFA 79 (300)
T ss_pred EEEecCCCEEE-EEECCCCceEEEEE-CCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEE
Confidence 67899999999 99999999988887 554 46789999999976 5555554 1 111 222222 34455
Q ss_pred cCCCe--E-EEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCC-cEEEEECcCCceeeee
Q 006825 419 DSQDV--S-FHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDC-VIHVWQVVESERKGEL 494 (630)
Q Consensus 419 ~s~d~--l-~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~Dg-tIrVWDl~tg~~~~~l 494 (630)
+++++ + +++..++.|++||+.+.+ .+..+.. ...+.+++|+|+|++|++++.++ .+++||..++.....+
T Consensus 80 ~~~~g~~l~~~~~~~~~l~~~d~~~~~-----~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~ 153 (300)
T TIGR03866 80 LHPNGKILYIANEDDNLVTVIDIETRK-----VLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNV 153 (300)
T ss_pred ECCCCCEEEEEcCCCCeEEEEECCCCe-----EEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEE
Confidence 66665 4 455678999999997653 2344442 23468899999999999998875 5678899887665543
Q ss_pred ecccccCcccceEEEEECCCCCEEEEe-eCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCC-----
Q 006825 495 LEKQEDGHLNMLLLANGSPEPTSLSPK-HLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHL----- 567 (630)
Q Consensus 495 ~~~~~~gh~~~V~svafSpdg~~lasg-s~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs----- 567 (630)
. .+ .....++|+|++++++.+ ..++.| .+|++ +++.+..+..+.
T Consensus 154 ~----~~--~~~~~~~~s~dg~~l~~~~~~~~~v-----------------------~i~d~~~~~~~~~~~~~~~~~~~ 204 (300)
T TIGR03866 154 L----VD--QRPRFAEFTADGKELWVSSEIGGTV-----------------------SVIDVATRKVIKKITFEIPGVHP 204 (300)
T ss_pred E----cC--CCccEEEECCCCCEEEEEcCCCCEE-----------------------EEEEcCcceeeeeeeeccccccc
Confidence 1 11 234678999999987544 458888 66666 445555443221
Q ss_pred C--CEEEEEEcCC-CeE-EEEECCCcEEEEeCCCCcEEEEEecCCceEEEE-cCCCcEEEEe
Q 006825 568 D--DVLDLSWSKS-QHL-LSSSMDKTVRLWHLSSKTCLKIFSHSDYDISLV-DRLMLRFAYG 624 (630)
Q Consensus 568 ~--~V~sLafSPd-~~L-aSgS~DgtVrIWDl~tg~~l~t~~H~~~V~sVa-s~~~~~lAsg 624 (630)
. ....++|+|+ +++ ++.+.+++|.+||+.+++.+..+.+...+++++ +|++..++++
T Consensus 205 ~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~ 266 (300)
T TIGR03866 205 EAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTT 266 (300)
T ss_pred ccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEE
Confidence 1 2356889999 664 445567789999999999888777667889999 8888877665
No 127
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=3.4e-15 Score=168.95 Aligned_cols=256 Identities=16% Similarity=0.216 Sum_probs=183.2
Q ss_pred cccEEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec-ceEeecCCCccEecccCCC
Q 006825 290 EQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ-NVEEGNKDSFDLNNNGSSG 368 (630)
Q Consensus 290 ~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~-~laSgS~D~tvr~vWD~~t 368 (630)
++.++|---++|+ |++. -+.||.. +.|+...- . |+.+++--|...|.+++-.. .+++|+.+.+|. ++...+
T Consensus 14 ~G~t~i~~d~~ge-fi~t-cgsdg~i-r~~~~~sd--~--e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~-~y~fps 85 (933)
T KOG1274|consen 14 GGLTLICYDPDGE-FICT-CGSDGDI-RKWKTNSD--E--EEPETIDISGELVSSIACYSNHFLTGSEQNTVL-RYKFPS 85 (933)
T ss_pred CceEEEEEcCCCC-EEEE-ecCCCce-EEeecCCc--c--cCCchhhccCceeEEEeecccceEEeeccceEE-EeeCCC
Confidence 3455555556666 4432 2345553 34443322 1 33344444888888888765 899999999999 998888
Q ss_pred CceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceee
Q 006825 369 GGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYK 448 (630)
Q Consensus 369 G~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~ 448 (630)
++.-..+. ..+-+++.++|+-+|+++|.||+| -.|++-+..... .
T Consensus 86 ~~~~~iL~-Rftlp~r~~~v~g~g~~iaagsdD-----------------------------~~vK~~~~~D~s-----~ 130 (933)
T KOG1274|consen 86 GEEDTILA-RFTLPIRDLAVSGSGKMIAAGSDD-----------------------------TAVKLLNLDDSS-----Q 130 (933)
T ss_pred CCccceee-eeeccceEEEEecCCcEEEeecCc-----------------------------eeEEEEeccccc-----h
Confidence 87766665 677889999999999988765544 467777765443 3
Q ss_pred eeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeeccc--ccCc-ccceEEEEECCCCCEEEEeeCCC
Q 006825 449 CQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQ--EDGH-LNMLLLANGSPEPTSLSPKHLDN 525 (630)
Q Consensus 449 v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~--~~gh-~~~V~svafSpdg~~lasgs~Dg 525 (630)
...+.+|+++|.+|.|+|.+++||+.+-||+|+|||+.++....++.... ..-. ...+..++|+|++..++....|+
T Consensus 131 ~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~ 210 (933)
T KOG1274|consen 131 EKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDN 210 (933)
T ss_pred heeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCC
Confidence 46789999999999999999999999999999999999998877754111 1111 34567899999977777777888
Q ss_pred eeeeecccccccccccccCccccccEEEeC-CCCceEEecc--CCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEE
Q 006825 526 HLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQG--HLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCL 601 (630)
Q Consensus 526 ~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~G--Hs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l 601 (630)
.| +++.. .......|.. |...+.+++|+|+ +|||++..||.|-|||+++...
T Consensus 211 ~V-----------------------kvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~- 266 (933)
T KOG1274|consen 211 TV-----------------------KVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER- 266 (933)
T ss_pred eE-----------------------EEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh-
Confidence 88 44444 3344444432 4445999999999 9999999999999999997322
Q ss_pred EEEecCCceEEEE
Q 006825 602 KIFSHSDYDISLV 614 (630)
Q Consensus 602 ~t~~H~~~V~sVa 614 (630)
-.-...|.|++
T Consensus 267 --~~~~~~Vc~~a 277 (933)
T KOG1274|consen 267 --HEFKRAVCCEA 277 (933)
T ss_pred --ccccceeEEEe
Confidence 11345566666
No 128
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.71 E-value=6.8e-16 Score=170.09 Aligned_cols=275 Identities=16% Similarity=0.088 Sum_probs=199.9
Q ss_pred ceeeecCccceeEEEeec------ceEeecCCCccEecccCCCCc------------------------eeE------Ee
Q 006825 332 FEMCVGHSPIVQELMRRQ------NVEEGNKDSFDLNNNGSSGGG------------------------MKS------KK 375 (630)
Q Consensus 332 f~~l~GHs~~V~~Lafs~------~laSgS~D~tvr~vWD~~tG~------------------------~~~------~l 375 (630)
...+.||++.|..|+|.. +|||+|.|..|| ||.+.-+. .+. .+
T Consensus 184 v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIR-iW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eal 262 (764)
T KOG1063|consen 184 VAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIR-IWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEAL 262 (764)
T ss_pred EEEeeccchhhhhhhhhccCCCcEEEEecCCceEEE-EEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhh
Confidence 357899999999999976 799999999999 99754322 111 22
Q ss_pred cCCccCCEEEEEEcCCCCeEEeecCCC-------CCc--c--------ccCC-cceEEEeecCCCe--EEEecCCcEEEE
Q 006825 376 KGSWFKSIRTVASSVTGHKERRSSDER-------DTS--S--------EKGG-RRSSSATDDSQDV--SFHGQERVRVRQ 435 (630)
Q Consensus 376 k~gH~~~V~sVAfSpdG~~lasgS~D~-------dt~--s--------~~gh-~~~Vsa~~~s~d~--l~Sgs~Dg~Vri 435 (630)
..||.+.|.+|.|+|.+..|.++|.|+ +.. . +.+| ...-...-++++. +++-+..|-.++
T Consensus 263 l~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hl 342 (764)
T KOG1063|consen 263 LMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHL 342 (764)
T ss_pred hcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEE
Confidence 249999999999999998888888887 111 1 2222 3344555566665 778888899999
Q ss_pred EeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCce-eee---------------------
Q 006825 436 YGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESER-KGE--------------------- 493 (630)
Q Consensus 436 Wd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~-~~~--------------------- 493 (630)
|..+ +.........+.||.+.|..|+|.|.|.+|.|.|.|.|-||+---..+. -.+
T Consensus 343 Wkt~--d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~ 420 (764)
T KOG1063|consen 343 WKTK--DKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDL 420 (764)
T ss_pred Eecc--CccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCc
Confidence 9833 3233334456789999999999999999999999999999864220000 000
Q ss_pred -------------------------------------------------------------------------------e
Q 006825 494 -------------------------------------------------------------------------------L 494 (630)
Q Consensus 494 -------------------------------------------------------------------------------l 494 (630)
+
T Consensus 421 ~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L 500 (764)
T KOG1063|consen 421 QFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCEL 500 (764)
T ss_pred eeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhc
Confidence 0
Q ss_pred e----------------cccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CC
Q 006825 495 L----------------EKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SD 557 (630)
Q Consensus 495 ~----------------~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sg 557 (630)
. ...+.||...|++++.+|+++++|++....... ...| .+|.. +-
T Consensus 501 ~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~e---------------hAvI---~lw~t~~W 562 (764)
T KOG1063|consen 501 TEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKE---------------HAVI---RLWNTANW 562 (764)
T ss_pred cCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCcc---------------ceEE---EEEeccch
Confidence 0 001246667778888888888888876544321 0111 77887 45
Q ss_pred CceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcE-EE---EEe-cCCceEEEE-cCCCcEEEEecce
Q 006825 558 KPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTC-LK---IFS-HSDYDISLV-DRLMLRFAYGAFL 627 (630)
Q Consensus 558 k~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~-l~---t~~-H~~~V~sVa-s~~~~~lAsgs~~ 627 (630)
..+..|++|.-.|+.|+|||| .+|++.|.|.++.||....... -. ..+ |.--|++.. .|+..++++++.+
T Consensus 563 ~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRD 639 (764)
T KOG1063|consen 563 LQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRD 639 (764)
T ss_pred hhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCC
Confidence 667789999999999999999 9999999999999998854321 11 234 999999999 9999999999866
No 129
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.71 E-value=1.2e-16 Score=168.83 Aligned_cols=244 Identities=13% Similarity=0.113 Sum_probs=175.9
Q ss_pred CcccccccEEEEECCCCcEEE-EeeecCCCceeEEEEcC--CCceEeeecceeeecCccceeEEEeec----ceEeecCC
Q 006825 285 TAGVAEQGCLIKNLDNGKEFV-VNEIQEDGTWKKVKEVG--TGRQLTIEEFEMCVGHSPIVQELMRRQ----NVEEGNKD 357 (630)
Q Consensus 285 ~~~~~~~~~~I~~LddG~~~~-v~e~~~dg~~~~l~dv~--TG~~lt~eef~~l~GHs~~V~~Lafs~----~laSgS~D 357 (630)
|-+.++....|||||--...+ ....|.- +.... -|+.- ..-.||+.+|..|++.- .|||||.|
T Consensus 196 AiGtmdp~IeIWDLDI~d~v~P~~~LGs~-----~sk~~~k~~k~~-----~~~~gHTdavl~Ls~n~~~~nVLaSgsaD 265 (463)
T KOG0270|consen 196 AIGTMDPEIEIWDLDIVDAVLPCVTLGSK-----ASKKKKKKGKRS-----NSASGHTDAVLALSWNRNFRNVLASGSAD 265 (463)
T ss_pred EEeccCceeEEeccccccccccceeechh-----hhhhhhhhcccc-----cccccchHHHHHHHhccccceeEEecCCC
Confidence 666888999999996432211 1111110 00000 01100 12458999999988654 89999999
Q ss_pred CccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEe
Q 006825 358 SFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYG 437 (630)
Q Consensus 358 ~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd 437 (630)
+||+ +||+.+|++..++. .|.+.|.+++|.|. .+..+++|+.|++|++.|
T Consensus 266 ~TV~-lWD~~~g~p~~s~~-~~~k~Vq~l~wh~~----------------------------~p~~LLsGs~D~~V~l~D 315 (463)
T KOG0270|consen 266 KTVK-LWDVDTGKPKSSIT-HHGKKVQTLEWHPY----------------------------EPSVLLSGSYDGTVALKD 315 (463)
T ss_pred ceEE-EEEcCCCCcceehh-hcCCceeEEEecCC----------------------------CceEEEeccccceEEeee
Confidence 9999 99999999999999 89999999999995 345578999999999999
Q ss_pred CCCCcccceeeeeEecccCcCEEEEEEccC-CCEEEEEeCCCcEEEEECcCC-ceeeeeecccccCcccceEEEEECCC-
Q 006825 438 KSCKDLTALYKCQEIQAHNGSIWSIKFSLD-GRYLASAGEDCVIHVWQVVES-ERKGELLEKQEDGHLNMLLLANGSPE- 514 (630)
Q Consensus 438 ~~~~el~~~~~v~tL~gHt~~V~sVaFSpD-G~~LASgS~DgtIrVWDl~tg-~~~~~l~~~~~~gh~~~V~svafSpd- 514 (630)
.+...... . .-.-.+.|-.++|.|. ...++.+..||+|+-+|++.. +++.++ ..|...|.++++++.
T Consensus 316 ~R~~~~s~----~-~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~-----~AHd~~ISgl~~n~~~ 385 (463)
T KOG0270|consen 316 CRDPSNSG----K-EWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTL-----KAHDDEISGLSVNIQT 385 (463)
T ss_pred ccCccccC----c-eEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEE-----EeccCCcceEEecCCC
Confidence 87422111 1 1124577999999994 456777889999999999876 666664 899999999999887
Q ss_pred CCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCC---CEEEEEEcCC--CeEEEEECCCc
Q 006825 515 PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLD---DVLDLSWSKS--QHLLSSSMDKT 589 (630)
Q Consensus 515 g~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~---~V~sLafSPd--~~LaSgS~Dgt 589 (630)
..++++++.|+.+ ++|++.+..-.....|.- ...|.++.|+ .+|+.|+.-+.
T Consensus 386 p~~l~t~s~d~~V-----------------------klw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~ 442 (463)
T KOG0270|consen 386 PGLLSTASTDKVV-----------------------KLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAV 442 (463)
T ss_pred CcceeeccccceE-----------------------EEEeecCCCCcccccccccccceeecccCCCcceEEEecCccce
Confidence 5678889999999 666663322222223332 2467777787 78888888889
Q ss_pred EEEEeCCCCcEE
Q 006825 590 VRLWHLSSKTCL 601 (630)
Q Consensus 590 VrIWDl~tg~~l 601 (630)
++|||+.+...+
T Consensus 443 ~~vwd~~~~~~V 454 (463)
T KOG0270|consen 443 LRVWDIFTNSPV 454 (463)
T ss_pred EEEeecccChhH
Confidence 999999887544
No 130
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.70 E-value=1e-15 Score=156.73 Aligned_cols=215 Identities=15% Similarity=0.153 Sum_probs=169.2
Q ss_pred ceEeecCCCccEecccCCCCceeEEecC-CccCCEE---EEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEE
Q 006825 350 NVEEGNKDSFDLNNNGSSGGGMKSKKKG-SWFKSIR---TVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSF 425 (630)
Q Consensus 350 ~laSgS~D~tvr~vWD~~tG~~~~~lk~-gH~~~V~---sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~ 425 (630)
+.|+.+.|.-|+ +||.-||+.+...+. .|...+. +++|+|||.+|..
T Consensus 125 l~a~ssr~~PIh-~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfa---------------------------- 175 (406)
T KOG2919|consen 125 LFAVSSRDQPIH-LWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFA---------------------------- 175 (406)
T ss_pred eeeeccccCcee-eeeccccccccchhhhhhHHhhhhheeEEecCCCCeEee----------------------------
Confidence 678889999999 999999998887663 5777664 6999999987743
Q ss_pred EecCCcEEEEEeCC-CCcccceeeeeEe-----cccCcCEEEEEEcc-CCCEEEEEeCCCcEEEEECcCCceeeeeeccc
Q 006825 426 HGQERVRVRQYGKS-CKDLTALYKCQEI-----QAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVESERKGELLEKQ 498 (630)
Q Consensus 426 Sgs~Dg~VriWd~~-~~el~~~~~v~tL-----~gHt~~V~sVaFSp-DG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~ 498 (630)
+....||++|+. .+..- .+.+. .+..+.|.|++|+| +.+.+|.|+.-.++-|+.-..+..+..+
T Consensus 176 --GykrcirvFdt~RpGr~c---~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~ll---- 246 (406)
T KOG2919|consen 176 --GYKRCIRVFDTSRPGRDC---PVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLL---- 246 (406)
T ss_pred --cccceEEEeeccCCCCCC---cchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeee----
Confidence 234568999883 32211 11222 24478899999999 6779999999999999988777777664
Q ss_pred ccCcccceEEEEECCCCCEEEEeeC-CCeeeeecccccccccccccCccccccEEEeC--CCCceEEeccCCCCE-EEEE
Q 006825 499 EDGHLNMLLLANGSPEPTSLSPKHL-DNHLEKKRRGRSINRKSLSLDHMVVPETVFAL--SDKPICSFQGHLDDV-LDLS 574 (630)
Q Consensus 499 ~~gh~~~V~svafSpdg~~lasgs~-Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl--sgk~l~tL~GHs~~V-~sLa 574 (630)
.+|.+.|+.+.|+++|..+.+|+. +..| ..|++ .+.++..|..|.... -.|.
T Consensus 247 -ggh~gGvThL~~~edGn~lfsGaRk~dkI-----------------------l~WDiR~~~~pv~~L~rhv~~TNQRI~ 302 (406)
T KOG2919|consen 247 -GGHGGGVTHLQWCEDGNKLFSGARKDDKI-----------------------LCWDIRYSRDPVYALERHVGDTNQRIL 302 (406)
T ss_pred -cccCCCeeeEEeccCcCeecccccCCCeE-----------------------EEEeehhccchhhhhhhhccCccceEE
Confidence 699999999999999999998864 3445 67887 678888999998733 3455
Q ss_pred Ec--CC-CeEEEEECCCcEEEEeCCC-CcEEEEEe-cCCceEEEE-cCCCcEEEEecc
Q 006825 575 WS--KS-QHLLSSSMDKTVRLWHLSS-KTCLKIFS-HSDYDISLV-DRLMLRFAYGAF 626 (630)
Q Consensus 575 fS--Pd-~~LaSgS~DgtVrIWDl~t-g~~l~t~~-H~~~V~sVa-s~~~~~lAsgs~ 626 (630)
|. |+ ++|++|+.||.|++||++. |..+..+. |.+.|+.|+ +|..-++|+.+.
T Consensus 303 FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssG 360 (406)
T KOG2919|consen 303 FDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSG 360 (406)
T ss_pred EecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccC
Confidence 54 56 8999999999999999998 78777777 999999999 888888887754
No 131
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=1.1e-14 Score=160.58 Aligned_cols=266 Identities=14% Similarity=0.112 Sum_probs=203.5
Q ss_pred ceeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCc
Q 006825 260 SMSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHS 339 (630)
Q Consensus 260 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs 339 (630)
+|++|.++++| |....++...|||+..+=-.. ..+.||.
T Consensus 30 slA~s~kS~~l--------------AvsRt~g~IEiwN~~~~w~~~---------------------------~vi~g~~ 68 (691)
T KOG2048|consen 30 SLAYSHKSNQL--------------AVSRTDGNIEIWNLSNNWFLE---------------------------PVIHGPE 68 (691)
T ss_pred EEEEeccCCce--------------eeeccCCcEEEEccCCCceee---------------------------EEEecCC
Confidence 48999999998 555788899999996641100 1233333
Q ss_pred -cceeEEEeec--ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEE
Q 006825 340 -PIVQELMRRQ--NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSA 416 (630)
Q Consensus 340 -~~V~~Lafs~--~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa 416 (630)
..|..|+|.+ .|.|.+.+++|. -||+.+++.+.... .-.+.|.++|..|.+..+
T Consensus 69 drsIE~L~W~e~~RLFS~g~sg~i~-EwDl~~lk~~~~~d-~~gg~IWsiai~p~~~~l--------------------- 125 (691)
T KOG2048|consen 69 DRSIESLAWAEGGRLFSSGLSGSIT-EWDLHTLKQKYNID-SNGGAIWSIAINPENTIL--------------------- 125 (691)
T ss_pred CCceeeEEEccCCeEEeecCCceEE-EEecccCceeEEec-CCCcceeEEEeCCccceE---------------------
Confidence 4578899986 799999999999 99999999999988 788899999999876544
Q ss_pred eecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeee-
Q 006825 417 TDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELL- 495 (630)
Q Consensus 417 ~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~- 495 (630)
+-|+.||.+..++...+.+. --..|.-.++.|.+|+|+|++..||+|+.||.|++||+..+..+....
T Consensus 126 --------~IgcddGvl~~~s~~p~~I~---~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~ 194 (691)
T KOG2048|consen 126 --------AIGCDDGVLYDFSIGPDKIT---YKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITM 194 (691)
T ss_pred --------EeecCCceEEEEecCCceEE---EEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeee
Confidence 45566776666666555432 234566678999999999999999999999999999999988766211
Q ss_pred --cccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEE
Q 006825 496 --EKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLD 572 (630)
Q Consensus 496 --~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~s 572 (630)
.....+....|+++.|-.++ .|++|-..|+| ++|+. .+.+++.+..|...|.+
T Consensus 195 ~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V-----------------------~FWd~~~gTLiqS~~~h~adVl~ 250 (691)
T KOG2048|consen 195 QLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTV-----------------------TFWDSIFGTLIQSHSCHDADVLA 250 (691)
T ss_pred cccccccCCceEEEEEEEeecC-cEEEecCCceE-----------------------EEEcccCcchhhhhhhhhcceeE
Confidence 11112344567888888655 56788888999 88887 78999999999999999
Q ss_pred EEEcCC-CeEEEEECCCcEEEEeCCCCcE--EEEEe---cCCceEEEE-cCCCcEEEEecc
Q 006825 573 LSWSKS-QHLLSSSMDKTVRLWHLSSKTC--LKIFS---HSDYDISLV-DRLMLRFAYGAF 626 (630)
Q Consensus 573 LafSPd-~~LaSgS~DgtVrIWDl~tg~~--l~t~~---H~~~V~sVa-s~~~~~lAsgs~ 626 (630)
|+..++ .+|.+++.|+.|..+...+++- +..-. |...|.+++ .++ .+.+|+.
T Consensus 251 Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~ 309 (691)
T KOG2048|consen 251 LAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGR 309 (691)
T ss_pred EEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecce
Confidence 999999 9999999999999888877643 22222 999999999 443 4445543
No 132
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=4.2e-15 Score=151.46 Aligned_cols=220 Identities=15% Similarity=0.215 Sum_probs=155.3
Q ss_pred CCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccC
Q 006825 377 GSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHN 456 (630)
Q Consensus 377 ~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt 456 (630)
.+|..-|.+|.|.+-|.++ ++++.|.+|+|||.. .+-....+....+.|.
T Consensus 10 s~h~DlihdVs~D~~GRRm-----------------------------AtCSsDq~vkI~d~~-~~s~~W~~Ts~Wrah~ 59 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRM-----------------------------ATCSSDQTVKIWDST-SDSGTWSCTSSWRAHD 59 (361)
T ss_pred cCCcceeeeeeecccCcee-----------------------------eeccCCCcEEEEecc-CCCCceEEeeeEEecC
Confidence 4666666666666666655 566777899999963 3334556778899999
Q ss_pred cCEEEEEEcc--CCCEEEEEeCCCcEEEEECcCC--ce--eeeeecccccCcccceEEEEECCC--CCEEEEeeCCCeee
Q 006825 457 GSIWSIKFSL--DGRYLASAGEDCVIHVWQVVES--ER--KGELLEKQEDGHLNMLLLANGSPE--PTSLSPKHLDNHLE 528 (630)
Q Consensus 457 ~~V~sVaFSp--DG~~LASgS~DgtIrVWDl~tg--~~--~~~l~~~~~~gh~~~V~svafSpd--g~~lasgs~Dg~I~ 528 (630)
+.|+.|.|.+ -|+.+|+++.|++|+||.-... +. .+-.....+......|+.|.|.|. |..+++++.||+++
T Consensus 60 ~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lR 139 (361)
T KOG2445|consen 60 GSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILR 139 (361)
T ss_pred CcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEE
Confidence 9999999976 6999999999999999986211 11 011111223566688999999997 88999999999999
Q ss_pred eecccccccccccccCccc----------------------------------------cccEEEeC--CC---CceEEe
Q 006825 529 KKRRGRSINRKSLSLDHMV----------------------------------------VPETVFAL--SD---KPICSF 563 (630)
Q Consensus 529 i~~~~~~~~~~s~s~d~~i----------------------------------------~~~~Vwdl--sg---k~l~tL 563 (630)
++..........+.+.+.+ ....||.. .+ ..+.+|
T Consensus 140 IYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L 219 (361)
T KOG2445|consen 140 IYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAEL 219 (361)
T ss_pred EEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhc
Confidence 8875543322111111100 01145554 22 245568
Q ss_pred ccCCCCEEEEEEcCC-----CeEEEEECCCcEEEEeCCCC--------------------cEEEEEe-cCCceEEEE-cC
Q 006825 564 QGHLDDVLDLSWSKS-----QHLLSSSMDKTVRLWHLSSK--------------------TCLKIFS-HSDYDISLV-DR 616 (630)
Q Consensus 564 ~GHs~~V~sLafSPd-----~~LaSgS~DgtVrIWDl~tg--------------------~~l~t~~-H~~~V~sVa-s~ 616 (630)
.+|+.+|++|+|.|+ .+||+++.|| |+||++... +.+..|. |+..|+.+. +-
T Consensus 220 ~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNm 298 (361)
T KOG2445|consen 220 PDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNM 298 (361)
T ss_pred CCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEee
Confidence 899999999999997 5799999999 999998731 1333444 999999999 77
Q ss_pred CCcEEEEecce
Q 006825 617 LMLRFAYGAFL 627 (630)
Q Consensus 617 ~~~~lAsgs~~ 627 (630)
.+..|++.+.+
T Consensus 299 tGtiLsStGdD 309 (361)
T KOG2445|consen 299 TGTILSSTGDD 309 (361)
T ss_pred eeeEEeecCCC
Confidence 78888777654
No 133
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=7.8e-16 Score=166.73 Aligned_cols=215 Identities=18% Similarity=0.208 Sum_probs=159.7
Q ss_pred eeecCccceeEEEeec---ceEeecCCCccEecccCCC--------CceeEEecCCccCCEEEEEEcCCCCeEEeecCCC
Q 006825 334 MCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSG--------GGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER 402 (630)
Q Consensus 334 ~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~t--------G~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~ 402 (630)
++.-|...|+.++|.| .|++++.|++++ +|.+.. -+.+.+++ +|.++|.||+.++.|+.+
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk-~WnLqk~~~s~~~~~epi~tfr-aH~gPVl~v~v~~n~~~~------- 359 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLK-LWNLQKAKKSAEKDVEPILTFR-AHEGPVLCVVVPSNGEHC------- 359 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchh-hhhhcccCCccccceeeeEEEe-cccCceEEEEecCCceEE-------
Confidence 7888999999999987 899999999999 999821 24677888 899999999998877544
Q ss_pred CCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCc-----ccceeeeeEecccCcCEEEEEEccCCCEEEEEeCC
Q 006825 403 DTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKD-----LTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED 477 (630)
Q Consensus 403 dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~e-----l~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~D 477 (630)
++|+-|++|+.|++.... ........+|.||++.||.+++|+....|++++.|
T Consensus 360 ----------------------ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~D 417 (577)
T KOG0642|consen 360 ----------------------YSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSD 417 (577)
T ss_pred ----------------------EeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCC
Confidence 788899999999654210 01112346789999999999999999999999999
Q ss_pred CcEEEEECcCCceeeeeecccccCcccc-------------------------------------------------eEE
Q 006825 478 CVIHVWQVVESERKGELLEKQEDGHLNM-------------------------------------------------LLL 508 (630)
Q Consensus 478 gtIrVWDl~tg~~~~~l~~~~~~gh~~~-------------------------------------------------V~s 508 (630)
||+|+|+...... .++... ..|..+ +..
T Consensus 418 gTvr~w~~~~~~~-~~f~~~--~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~ 494 (577)
T KOG0642|consen 418 GTVRLWEPTEESP-CTFGEP--KEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINK 494 (577)
T ss_pred ceEEeeccCCcCc-cccCCc--cccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccce
Confidence 9999999865544 111000 111100 111
Q ss_pred EEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEEC
Q 006825 509 ANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSM 586 (630)
Q Consensus 509 vafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~ 586 (630)
+..+|...+.+++..|+ .+ ++++. ++++++....|...|+++++-|+ .+|++++.
T Consensus 495 vVs~~~~~~~~~~hed~--------------------~I---r~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~ 551 (577)
T KOG0642|consen 495 VVSHPTADITFTAHEDR--------------------SI---RFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSH 551 (577)
T ss_pred EEecCCCCeeEecccCC--------------------ce---ecccccccccchheeeccceecceeecCCCceEEeecC
Confidence 12222222222222222 22 67776 88999999999999999999999 99999999
Q ss_pred CCcEEEEeCCCCcEEEEEe
Q 006825 587 DKTVRLWHLSSKTCLKIFS 605 (630)
Q Consensus 587 DgtVrIWDl~tg~~l~t~~ 605 (630)
|+.|++|.+....|+..+.
T Consensus 552 d~sv~l~kld~k~~~~es~ 570 (577)
T KOG0642|consen 552 DGSVRLWKLDVKTCVLEST 570 (577)
T ss_pred Cceeehhhccchheeeccc
Confidence 9999999999998887665
No 134
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=2.1e-15 Score=163.98 Aligned_cols=258 Identities=17% Similarity=0.107 Sum_probs=188.9
Q ss_pred eeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCe--EEeecCCC-----
Q 006825 333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHK--ERRSSDER----- 402 (630)
Q Consensus 333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~--lasgS~D~----- 402 (630)
..+.||++.|.+|...| .||+|+.|+++| +|.+.||.|+++.. ....|+||||.|.+.. ||.+-.+.
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvr-iWEi~TgRcvr~~~--~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivn 470 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVR-IWEIATGRCVRTVQ--FDSEIRSVAWNPLSDLCVLAVAVGECVLIVN 470 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEE-EEEeecceEEEEEe--ecceeEEEEecCCCCceeEEEEecCceEEeC
Confidence 45789999999999988 899999999999 99999999999886 4668999999998763 33322111
Q ss_pred -----------------CC--cc----------------cc-------CCcceEEEeecCCCe--EEEecC---CcEEEE
Q 006825 403 -----------------DT--SS----------------EK-------GGRRSSSATDDSQDV--SFHGQE---RVRVRQ 435 (630)
Q Consensus 403 -----------------dt--~s----------------~~-------gh~~~Vsa~~~s~d~--l~Sgs~---Dg~Vri 435 (630)
.. .. .. .|...|..+.....| +++... ...|.|
T Consensus 471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli 550 (733)
T KOG0650|consen 471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI 550 (733)
T ss_pred ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence 00 00 01 122333344444444 333322 234555
Q ss_pred EeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCC
Q 006825 436 YGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEP 515 (630)
Q Consensus 436 Wd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg 515 (630)
+++.-.. ....|+--.+.|.++.|+|.-.+|+.+.. ..|||||+..+..++++ ..-...|..++.+|.|
T Consensus 551 HQLSK~~-----sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL-----~tg~kwiS~msihp~G 619 (733)
T KOG0650|consen 551 HQLSKRK-----SQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKL-----LTGSKWISSMSIHPNG 619 (733)
T ss_pred Eeccccc-----ccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHH-----hcCCeeeeeeeecCCC
Confidence 5543221 12335556788999999999888888775 68999999988777775 3334678999999999
Q ss_pred CEEEEeeCCCeeeeecccccccccccccCccccccEEEeC--CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEE
Q 006825 516 TSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL--SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRL 592 (630)
Q Consensus 516 ~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl--sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrI 592 (630)
.-|+.++.|+.+ .+|++ +.++.+++.-|...|++|+|++. .+|++|+.|+++.|
T Consensus 620 Dnli~gs~d~k~-----------------------~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~V 676 (733)
T KOG0650|consen 620 DNLILGSYDKKM-----------------------CWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIV 676 (733)
T ss_pred CeEEEecCCCee-----------------------EEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEE
Confidence 999999999998 77777 67899999999999999999999 99999999999999
Q ss_pred EeCC------CC---cEEEEEe-cCCc----eEEEE-cCCCcEEEEecce
Q 006825 593 WHLS------SK---TCLKIFS-HSDY----DISLV-DRLMLRFAYGAFL 627 (630)
Q Consensus 593 WDl~------tg---~~l~t~~-H~~~----V~sVa-s~~~~~lAsgs~~ 627 (630)
+.-. .. -+++.+. |.-. |..+. +|..-++.+++.+
T Consensus 677 fhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd 726 (733)
T KOG0650|consen 677 FHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGAD 726 (733)
T ss_pred EeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCC
Confidence 9642 11 2344554 5444 66666 8888888777655
No 135
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.67 E-value=1.4e-15 Score=154.03 Aligned_cols=205 Identities=17% Similarity=0.192 Sum_probs=152.5
Q ss_pred cCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCe---EEEecCCcEEEEEeCCCCc---cccee----e-
Q 006825 380 FKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDV---SFHGQERVRVRQYGKSCKD---LTALY----K- 448 (630)
Q Consensus 380 ~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~---l~Sgs~Dg~VriWd~~~~e---l~~~~----~- 448 (630)
.++|.+++.++|-. + ...|...|.++...+.. +++|+.|+.|.+||++.-. ...+. |
T Consensus 24 ~rRil~L~Ln~d~d-~-----------~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~ 91 (397)
T KOG4283|consen 24 QRRILSLQLNNDKD-F-----------VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCI 91 (397)
T ss_pred hhhhheeeccCCcc-e-----------eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeee
Confidence 35577777777632 2 34566777777766543 7899999999999986432 11111 1
Q ss_pred --eeEecccCcCEEEEEEcc-CCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCC---CCEEEEee
Q 006825 449 --CQEIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE---PTSLSPKH 522 (630)
Q Consensus 449 --v~tL~gHt~~V~sVaFSp-DG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpd---g~~lasgs 522 (630)
.+.-.+|.-.|..+.|-| |.-++.|+|.|.++||||..+-+....+ ...+.|+.-+++|- ..+||+|.
T Consensus 92 v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F------~me~~VYshamSp~a~sHcLiA~gt 165 (397)
T KOG4283|consen 92 VAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDF------KMEGKVYSHAMSPMAMSHCLIAAGT 165 (397)
T ss_pred ccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEe------ecCceeehhhcChhhhcceEEEEec
Confidence 133467999999999999 7778999999999999999988766554 23456777777775 45788888
Q ss_pred CCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC--CeEEEEECCCcEEEEeCCCC-
Q 006825 523 LDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSK- 598 (630)
Q Consensus 523 ~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd--~~LaSgS~DgtVrIWDl~tg- 598 (630)
.+-.| ++.++ +|..-++|.||.+.|.++.|+|. -.|+|||.||+||+||++..
T Consensus 166 r~~~V-----------------------rLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRras 222 (397)
T KOG4283|consen 166 RDVQV-----------------------RLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRAS 222 (397)
T ss_pred CCCcE-----------------------EEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeeccc
Confidence 88888 78888 89999999999999999999998 46789999999999999864
Q ss_pred cEEEEEe---------------cCCceEEEE-cCCCcEEEEec
Q 006825 599 TCLKIFS---------------HSDYDISLV-DRLMLRFAYGA 625 (630)
Q Consensus 599 ~~l~t~~---------------H~~~V~sVa-s~~~~~lAsgs 625 (630)
-|..++. |.+.|..++ ..++..+++-+
T Consensus 223 gcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~g 265 (397)
T KOG4283|consen 223 GCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCG 265 (397)
T ss_pred ceeEEeecccCccCccccccccccceeeeeeecccchhhhhcc
Confidence 4555443 556677777 55555554443
No 136
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.66 E-value=1.6e-16 Score=177.47 Aligned_cols=253 Identities=14% Similarity=0.108 Sum_probs=188.6
Q ss_pred ecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCcc
Q 006825 330 EEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSS 406 (630)
Q Consensus 330 eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s 406 (630)
.-+..|.||..+|.+++|-. ++.+||+|..++ ||...++.++..++ ||...|+.+|.+-...+
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvK-iwS~et~~~lAs~r-Ghs~ditdlavs~~n~~------------ 246 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVK-IWSMETARCLASCR-GHSGDITDLAVSSNNTM------------ 246 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceee-eeeccchhhhccCC-CCccccchhccchhhhh------------
Confidence 34477999999999999977 899999999999 99999999999999 99999999888775443
Q ss_pred ccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECc
Q 006825 407 EKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVV 486 (630)
Q Consensus 407 ~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~ 486 (630)
+++++.|..||+|.+.++. .+..|.||+++|++|+|+|- ++.+.||++++||.+
T Consensus 247 -----------------iaaaS~D~vIrvWrl~~~~-----pvsvLrghtgavtaiafsP~----~sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 247 -----------------IAAASNDKVIRVWRLPDGA-----PVSVLRGHTGAVTAIAFSPR----ASSSDDGTCRIWDAR 300 (1113)
T ss_pred -----------------hhhcccCceEEEEecCCCc-----hHHHHhccccceeeeccCcc----ccCCCCCceEecccc
Confidence 4667778899999998875 46778999999999999994 378999999999987
Q ss_pred CCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccccc------ccccccccC--c------cccccEE
Q 006825 487 ESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRS------INRKSLSLD--H------MVVPETV 552 (630)
Q Consensus 487 tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~------~~~~s~s~d--~------~i~~~~V 552 (630)
-...+ .............+.++.|...+..+++++.|+.-..|..... ....+.+.+ . ......+
T Consensus 301 ~~~~~-y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~v 379 (1113)
T KOG0644|consen 301 LEPRI-YVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCV 379 (1113)
T ss_pred ccccc-cCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeee
Confidence 21111 1111111122245667777778888899988886655543220 000111111 0 0112278
Q ss_pred EeC-CCCceEEeccCCCCEEEEEEcCC--CeEEEEECCCcEEEEeCCCCcEEEEEe--cCCceEEEEcCCCcEEEE
Q 006825 553 FAL-SDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYDISLVDRLMLRFAY 623 (630)
Q Consensus 553 wdl-sgk~l~tL~GHs~~V~sLafSPd--~~LaSgS~DgtVrIWDl~tg~~l~t~~--H~~~V~sVas~~~~~lAs 623 (630)
|++ +|..++.+.||...+..|.|+|- ....+++.||.+.|||+-.|..++.+. |...|.+--++++..++.
T Consensus 380 wnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~l 455 (1113)
T KOG0644|consen 380 WNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIAL 455 (1113)
T ss_pred eecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEec
Confidence 988 89999999999999999999995 566799999999999999999888775 666665544555554443
No 137
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.66 E-value=4.2e-13 Score=137.63 Aligned_cols=230 Identities=22% Similarity=0.292 Sum_probs=171.2
Q ss_pred eEEEEcCCCc-eEeeecceeeecCc-cceeEEEe-ec----ceEe-ecCCCccEecccCCC-CceeEEecCCccCCEEEE
Q 006825 316 KKVKEVGTGR-QLTIEEFEMCVGHS-PIVQELMR-RQ----NVEE-GNKDSFDLNNNGSSG-GGMKSKKKGSWFKSIRTV 386 (630)
Q Consensus 316 ~~l~dv~TG~-~lt~eef~~l~GHs-~~V~~Laf-s~----~laS-gS~D~tvr~vWD~~t-G~~~~~lk~gH~~~V~sV 386 (630)
..+|+...+. .+ ..+.++. ..+..+.+ .+ .++. +..|++++ +|+..+ +.....+. +|...|+.+
T Consensus 89 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~~~~~-~~~~~v~~~ 161 (466)
T COG2319 89 IKLWDLDNGEKLI-----KSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVK-LWDLSTPGKLIRTLE-GHSESVTSL 161 (466)
T ss_pred EEEEEcCCCceeE-----EEEeccCCCceeeEEEECCCcceEEeccCCCCccEE-EEEecCCCeEEEEEe-cCcccEEEE
Confidence 3455555554 22 3344422 24444444 32 2334 44489999 999988 77888888 999999999
Q ss_pred EEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEec-CCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEc
Q 006825 387 ASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQ-ERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFS 465 (630)
Q Consensus 387 AfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs-~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFS 465 (630)
+|+|++++++. +. .++.+++|+..... .+..+.+|...|.+++|+
T Consensus 162 ~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~v~~~~~~ 207 (466)
T COG2319 162 AFSPDGKLLAS-----------------------------GSSLDGTIKLWDLRTGK-----PLSTLAGHTDPVSSLAFS 207 (466)
T ss_pred EECCCCCEEEe-----------------------------cCCCCCceEEEEcCCCc-----eEEeeccCCCceEEEEEc
Confidence 99999875543 33 37889999987632 467788899999999999
Q ss_pred cCCC-EEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccC
Q 006825 466 LDGR-YLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLD 544 (630)
Q Consensus 466 pDG~-~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d 544 (630)
|++. ++++++.|++|++||...+...... ..+|...+ ...|+|++.++++++.++.+
T Consensus 208 ~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~d~~~----------------- 265 (466)
T COG2319 208 PDGGLLIASGSSDGTIRLWDLSTGKLLRST----LSGHSDSV-VSSFSPDGSLLASGSSDGTI----------------- 265 (466)
T ss_pred CCcceEEEEecCCCcEEEEECCCCcEEeee----cCCCCcce-eEeECCCCCEEEEecCCCcE-----------------
Confidence 9998 6666699999999998866666521 36777765 44899999888899999999
Q ss_pred ccccccEEEeCC-CC-ceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe---cCCceEEEE
Q 006825 545 HMVVPETVFALS-DK-PICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS---HSDYDISLV 614 (630)
Q Consensus 545 ~~i~~~~Vwdls-gk-~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~---H~~~V~sVa 614 (630)
++|+.. .. .+..+.+|...|.++.|.|+ ..+++++.|+.+++|++.+........ |...|..+.
T Consensus 266 ------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (466)
T COG2319 266 ------RLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLS 335 (466)
T ss_pred ------EEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEE
Confidence 667662 22 24555789999999999997 888889999999999999887665543 777677776
No 138
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.66 E-value=2.1e-15 Score=159.51 Aligned_cols=204 Identities=16% Similarity=0.148 Sum_probs=149.0
Q ss_pred ceEeecCCCccEecccCCCCce-eEEecCC-ccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCe---E
Q 006825 350 NVEEGNKDSFDLNNNGSSGGGM-KSKKKGS-WFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDV---S 424 (630)
Q Consensus 350 ~laSgS~D~tvr~vWD~~tG~~-~~~lk~g-H~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~---l 424 (630)
++|-|..|..|- |||+.--.. ...+..| -.+.++ .++ | +....-.+|+..|-++.+.... |
T Consensus 194 yvAiGtmdp~Ie-IWDLDI~d~v~P~~~LGs~~sk~~-~k~---~---------k~~~~~~gHTdavl~Ls~n~~~~nVL 259 (463)
T KOG0270|consen 194 YVAIGTMDPEIE-IWDLDIVDAVLPCVTLGSKASKKK-KKK---G---------KRSNSASGHTDAVLALSWNRNFRNVL 259 (463)
T ss_pred eEEEeccCceeE-Eeccccccccccceeechhhhhhh-hhh---c---------ccccccccchHHHHHHHhccccceeE
Confidence 799999999999 999753211 1111111 000000 000 0 0011134677666666666544 9
Q ss_pred EEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc-CCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcc
Q 006825 425 FHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHL 503 (630)
Q Consensus 425 ~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp-DG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~ 503 (630)
++|+.|.+|++||+.+++ +.+++..|.+.|.+++|+| ...+|++|+.|++|+|.|.+....... .....
T Consensus 260 aSgsaD~TV~lWD~~~g~-----p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~-----~wk~~ 329 (463)
T KOG0270|consen 260 ASGSADKTVKLWDVDTGK-----PKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGK-----EWKFD 329 (463)
T ss_pred EecCCCceEEEEEcCCCC-----cceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCc-----eEEec
Confidence 999999999999999886 5678889999999999999 678999999999999999985322211 12234
Q ss_pred cceEEEEECCC-CCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC--CCCceEEeccCCCCEEEEEEcCC--
Q 006825 504 NMLLLANGSPE-PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL--SDKPICSFQGHLDDVLDLSWSKS-- 578 (630)
Q Consensus 504 ~~V~svafSpd-g~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl--sgk~l~tL~GHs~~V~sLafSPd-- 578 (630)
+.|-.++|.|- ...++++..||++ +-+++ .++++.+++.|.+.|.+|++++.
T Consensus 330 g~VEkv~w~~~se~~f~~~tddG~v-----------------------~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p 386 (463)
T KOG0270|consen 330 GEVEKVAWDPHSENSFFVSTDDGTV-----------------------YYFDIRNPGKPVWTLKAHDDEISGLSVNIQTP 386 (463)
T ss_pred cceEEEEecCCCceeEEEecCCceE-----------------------EeeecCCCCCceeEEEeccCCcceEEecCCCC
Confidence 66788899886 4566677789999 66776 57999999999999999999987
Q ss_pred CeEEEEECCCcEEEEeCCCCcE
Q 006825 579 QHLLSSSMDKTVRLWHLSSKTC 600 (630)
Q Consensus 579 ~~LaSgS~DgtVrIWDl~tg~~ 600 (630)
++|+|+|.|++|+||++..-..
T Consensus 387 ~~l~t~s~d~~Vklw~~~~~~~ 408 (463)
T KOG0270|consen 387 GLLSTASTDKVVKLWKFDVDSP 408 (463)
T ss_pred cceeeccccceEEEEeecCCCC
Confidence 8999999999999999875443
No 139
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.65 E-value=1.6e-15 Score=157.11 Aligned_cols=232 Identities=15% Similarity=0.114 Sum_probs=166.0
Q ss_pred ceeeecCccceeEEEeec-ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-------C
Q 006825 332 FEMCVGHSPIVQELMRRQ-NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-------D 403 (630)
Q Consensus 332 f~~l~GHs~~V~~Lafs~-~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-------d 403 (630)
+.++.-|.+.|+.|++.. ..++.+.|+||+ .|...- ..+++.- | ...+..+.-.-.+..++|++.+- +
T Consensus 102 ~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK-~wk~~~-~p~~til-g-~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~ 177 (433)
T KOG0268|consen 102 IRTFKAHEGLVRGICVTQTSFFTVGDDKTVK-QWKIDG-PPLHTIL-G-KSVYLGIDHHRKNSVFATCGEQIDIWDEQRD 177 (433)
T ss_pred hheeecccCceeeEEecccceEEecCCccee-eeeccC-Ccceeee-c-cccccccccccccccccccCceeeecccccC
Confidence 377788999999999988 788999999999 997643 3444443 1 22233344444445555555321 1
Q ss_pred --CccccCCcceEEEeecCCCe---EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCC
Q 006825 404 --TSSEKGGRRSSSATDDSQDV---SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDC 478 (630)
Q Consensus 404 --t~s~~gh~~~Vsa~~~s~d~---l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~Dg 478 (630)
..+..=+...+.++.|++.- |+++..|+.|.+||+...... ..+ . -+..-+.|+|+|.+-.+++|++|.
T Consensus 178 ~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl--~KV-i---~~mRTN~IswnPeafnF~~a~ED~ 251 (433)
T KOG0268|consen 178 NPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPL--KKV-I---LTMRTNTICWNPEAFNFVAANEDH 251 (433)
T ss_pred CccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCcc--cee-e---eeccccceecCccccceeeccccc
Confidence 12244455566677777654 888889999999999876431 111 1 123356899999888899999999
Q ss_pred cEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCC-
Q 006825 479 VIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD- 557 (630)
Q Consensus 479 tIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsg- 557 (630)
.+..+|++.-...... ..+|...|..+.|+|.|+-+++|+.|.+| +||....
T Consensus 252 nlY~~DmR~l~~p~~v----~~dhvsAV~dVdfsptG~EfvsgsyDksI-----------------------RIf~~~~~ 304 (433)
T KOG0268|consen 252 NLYTYDMRNLSRPLNV----HKDHVSAVMDVDFSPTGQEFVSGSYDKSI-----------------------RIFPVNHG 304 (433)
T ss_pred cceehhhhhhcccchh----hcccceeEEEeccCCCcchhccccccceE-----------------------EEeecCCC
Confidence 9999999876544443 58999999999999999999999999999 5665522
Q ss_pred CceEEeccCC---CCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEE
Q 006825 558 KPICSFQGHL---DDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLK 602 (630)
Q Consensus 558 k~l~tL~GHs---~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~ 602 (630)
...-.+ |+ ..|.++.||-| +|++|||.|+.||||.....+.+.
T Consensus 305 ~SRdiY--htkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklg 351 (433)
T KOG0268|consen 305 HSRDIY--HTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLG 351 (433)
T ss_pred cchhhh--hHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcC
Confidence 111111 22 35899999999 999999999999999986554443
No 140
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.64 E-value=1.3e-14 Score=154.06 Aligned_cols=268 Identities=13% Similarity=0.066 Sum_probs=191.9
Q ss_pred eeeecCccceeEEEeec-----ceEeecCCCccEecccCCCCc----eeEEecCCccCCEEEEEEcCC-CCeEEeecCCC
Q 006825 333 EMCVGHSPIVQELMRRQ-----NVEEGNKDSFDLNNNGSSGGG----MKSKKKGSWFKSIRTVASSVT-GHKERRSSDER 402 (630)
Q Consensus 333 ~~l~GHs~~V~~Lafs~-----~laSgS~D~tvr~vWD~~tG~----~~~~lk~gH~~~V~sVAfSpd-G~~lasgS~D~ 402 (630)
....-|...|.+|+|.| .+|+|..-++|- +||+.+.+ ....+. .|...|.++.|+|. -..+.+.|.|+
T Consensus 180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG-~Wn~~~~~~d~d~v~~f~-~hs~~Vs~l~F~P~n~s~i~ssSyDG 257 (498)
T KOG4328|consen 180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVG-LWNFGTQEKDKDGVYLFT-PHSGPVSGLKFSPANTSQIYSSSYDG 257 (498)
T ss_pred ceeEecccceEEEEecccCcceEEEEccCCCcEE-EEecCCCCCccCceEEec-cCCccccceEecCCChhheeeeccCc
Confidence 45566888999999999 688999999999 99995322 233444 89999999999994 34677777776
Q ss_pred CC-------c------cccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc-
Q 006825 403 DT-------S------SEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL- 466 (630)
Q Consensus 403 dt-------~------s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp- 466 (630)
.+ . .+..-....+..+|+.+- ++.+..-|...+||..++.-. ...+.-|...|..|+++|
T Consensus 258 tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~----~~~~~lh~kKI~sv~~NP~ 333 (498)
T KOG4328|consen 258 TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSE----YENLRLHKKKITSVALNPV 333 (498)
T ss_pred eeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCcc----chhhhhhhcccceeecCCC
Confidence 11 1 133344566666776654 666666678899998876432 233566889999999999
Q ss_pred CCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCcc
Q 006825 467 DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHM 546 (630)
Q Consensus 467 DG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~ 546 (630)
...+|||||.|+|++|||++.-.....- ......|...|.++.|+|.+-.|++.+.|..|++|+...
T Consensus 334 ~p~~laT~s~D~T~kIWD~R~l~~K~sp-~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~------------ 400 (498)
T KOG4328|consen 334 CPWFLATASLDQTAKIWDLRQLRGKASP-FLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSC------------ 400 (498)
T ss_pred CchheeecccCcceeeeehhhhcCCCCc-ceecccccceeeeeEEcCCCCceEeeccCCceEEeeccc------------
Confidence 5678999999999999999865443320 112468999999999999977799999999995554320
Q ss_pred ccccEEEeCCCCceEEeccCCC------CEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe--cCCceEEEE--c
Q 006825 547 VVPETVFALSDKPICSFQGHLD------DVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYDISLV--D 615 (630)
Q Consensus 547 i~~~~Vwdlsgk~l~tL~GHs~------~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~--H~~~V~sVa--s 615 (630)
+.....++.++. |.. ......|.|+ .+++.|-.-..|-|+|-..++.+..+. ....|.++- +
T Consensus 401 ------~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~H 473 (498)
T KOG4328|consen 401 ------ISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFH 473 (498)
T ss_pred ------ccccCCccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeec
Confidence 000112222222 221 2345689999 999999999999999999999887765 445677777 8
Q ss_pred CCCcEEEEecc
Q 006825 616 RLMLRFAYGAF 626 (630)
Q Consensus 616 ~~~~~lAsgs~ 626 (630)
|....+++|+.
T Consensus 474 P~~~~~~aG~~ 484 (498)
T KOG4328|consen 474 PMRDTLAAGGN 484 (498)
T ss_pred ccccceeccCC
Confidence 88776666654
No 141
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.64 E-value=1e-13 Score=148.59 Aligned_cols=263 Identities=12% Similarity=0.053 Sum_probs=192.9
Q ss_pred eeeecCccceeEEEeec-------ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCC-CeEEeecCCC--
Q 006825 333 EMCVGHSPIVQELMRRQ-------NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTG-HKERRSSDER-- 402 (630)
Q Consensus 333 ~~l~GHs~~V~~Lafs~-------~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG-~~lasgS~D~-- 402 (630)
+.+-.....|.+++|++ ..+--+.+..+. +||...+......+ .-...|..++|.|.+ .++++.+...
T Consensus 148 ~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lS-VWdWqk~~~~~~vk-~sne~v~~a~FHPtd~nliit~Gk~H~~ 225 (626)
T KOG2106|consen 148 HVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLS-VWDWQKKAKLGPVK-TSNEVVFLATFHPTDPNLIITCGKGHLY 225 (626)
T ss_pred eeeccccccceeeeecccCCCceEEEecCCCccccc-hhhchhhhccCcce-eccceEEEEEeccCCCcEEEEeCCceEE
Confidence 33445567789999998 234456677777 99999888877777 666778899999954 4666655433
Q ss_pred ----C-------Ccc-ccCCcceEEEeecCCCe-EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCC
Q 006825 403 ----D-------TSS-EKGGRRSSSATDDSQDV-SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGR 469 (630)
Q Consensus 403 ----d-------t~s-~~gh~~~Vsa~~~s~d~-l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~ 469 (630)
. ... ++..+..|.++.|..++ +++|..+|.|.||++.+..+ .++..+|.+.|.+++.-.+|.
T Consensus 226 Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~-----~k~~~aH~ggv~~L~~lr~Gt 300 (626)
T KOG2106|consen 226 FWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRI-----SKQVHAHDGGVFSLCMLRDGT 300 (626)
T ss_pred EEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceE-----EeEeeecCCceEEEEEecCcc
Confidence 1 111 33344789999999999 99999999999999976643 233349999999999999998
Q ss_pred EEEEEeCCCcEEEEECcCCce-----------eeee----------------ec--------ccccCcccceEEEEECCC
Q 006825 470 YLASAGEDCVIHVWQVVESER-----------KGEL----------------LE--------KQEDGHLNMLLLANGSPE 514 (630)
Q Consensus 470 ~LASgS~DgtIrVWDl~tg~~-----------~~~l----------------~~--------~~~~gh~~~V~svafSpd 514 (630)
+|- |+.|+.|..||-.-.+. ++.+ +. ....+|....+.++.+|+
T Consensus 301 llS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps 379 (626)
T KOG2106|consen 301 LLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPS 379 (626)
T ss_pred Eee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCC
Confidence 555 99999999998311000 0000 00 012466677788899999
Q ss_pred CCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCCCeEEEEECCCcEEEEe
Q 006825 515 PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWH 594 (630)
Q Consensus 515 g~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd~~LaSgS~DgtVrIWD 594 (630)
...+++++.|+++.+|+..+ .+|. .. -.+++.|+.|+|.+.||.|...|...+.|
T Consensus 380 ~~q~~T~gqdk~v~lW~~~k----------------~~wt--------~~-~~d~~~~~~fhpsg~va~Gt~~G~w~V~d 434 (626)
T KOG2106|consen 380 KNQLLTCGQDKHVRLWNDHK----------------LEWT--------KI-IEDPAECADFHPSGVVAVGTATGRWFVLD 434 (626)
T ss_pred hhheeeccCcceEEEccCCc----------------eeEE--------EE-ecCceeEeeccCcceEEEeeccceEEEEe
Confidence 99999999999995555222 2222 11 33567899999999999999999999999
Q ss_pred CCCCcEEEEEecCCceEEEE-cCCCcEEEEeccee
Q 006825 595 LSSKTCLKIFSHSDYDISLV-DRLMLRFAYGAFLN 628 (630)
Q Consensus 595 l~tg~~l~t~~H~~~V~sVa-s~~~~~lAsgs~~n 628 (630)
.++...+..-..+.++++|+ +|.+..||.|+.++
T Consensus 435 ~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~ 469 (626)
T KOG2106|consen 435 TETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDN 469 (626)
T ss_pred cccceeEEEEecCCceEEEEEcCCCCEEEEecCCC
Confidence 99965555444788899999 99999999998764
No 142
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=2.6e-14 Score=151.96 Aligned_cols=259 Identities=15% Similarity=0.101 Sum_probs=195.9
Q ss_pred ccceeEEEeec---ceEeecCCCccEecccCCC--CceeEEecCCccCCEEEEEEcCCCC-eEEeecCCC-------CCc
Q 006825 339 SPIVQELMRRQ---NVEEGNKDSFDLNNNGSSG--GGMKSKKKGSWFKSIRTVASSVTGH-KERRSSDER-------DTS 405 (630)
Q Consensus 339 s~~V~~Lafs~---~laSgS~D~tvr~vWD~~t--G~~~~~lk~gH~~~V~sVAfSpdG~-~lasgS~D~-------dt~ 405 (630)
...|++|.|+| .|.+++.|+++| ++-+.. ...++.+. --.-+|.+.+|.|+|+ .+.+++.-+ .+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lr-ifqvDGk~N~~lqS~~-l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a 290 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLR-IFQVDGKVNPKLQSIH-LEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA 290 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEE-EEEecCccChhheeee-eccCccceeeecCCCceEEEecccceEEEEeecccc
Confidence 35689999998 789999999999 997642 23333333 2345899999999999 777776555 111
Q ss_pred c------ccCC-cceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeC
Q 006825 406 S------EKGG-RRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE 476 (630)
Q Consensus 406 s------~~gh-~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~ 476 (630)
+ ..|+ ...+.-...+++. ++..+..|.|.+.-..++++. .+++ -.+.|..++|+.||+.|+..+.
T Consensus 291 k~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli-----~s~K-ieG~v~~~~fsSdsk~l~~~~~ 364 (514)
T KOG2055|consen 291 KVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELI-----TSFK-IEGVVSDFTFSSDSKELLASGG 364 (514)
T ss_pred ccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhh-----heee-eccEEeeEEEecCCcEEEEEcC
Confidence 1 2333 2345555555555 888999999999999888763 3333 4678999999999999999999
Q ss_pred CCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCC
Q 006825 477 DCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS 556 (630)
Q Consensus 477 DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdls 556 (630)
+|.|.+||++...++..+.. .| .-.-.+++.++++.++|+|+..|.|.+++... ..-...
T Consensus 365 ~GeV~v~nl~~~~~~~rf~D---~G-~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s----------------~~~s~~ 424 (514)
T KOG2055|consen 365 TGEVYVWNLRQNSCLHRFVD---DG-SVHGTSLCISLNGSYLATGSDSGIVNIYDGNS----------------CFASTN 424 (514)
T ss_pred CceEEEEecCCcceEEEEee---cC-ccceeeeeecCCCceEEeccCcceEEEeccch----------------hhccCC
Confidence 99999999999988877641 11 12335778889999999999999997666442 111124
Q ss_pred CCceEEeccCCCCEEEEEEcCC-CeEEEEE--CCCcEEEEeCCCCcEEEEEe----cCCceEEEE-cCCCcEEEEec
Q 006825 557 DKPICSFQGHLDDVLDLSWSKS-QHLLSSS--MDKTVRLWHLSSKTCLKIFS----HSDYDISLV-DRLMLRFAYGA 625 (630)
Q Consensus 557 gk~l~tL~GHs~~V~sLafSPd-~~LaSgS--~DgtVrIWDl~tg~~l~t~~----H~~~V~sVa-s~~~~~lAsgs 625 (630)
.+|+.++..-+..|+.|+|+|+ ++||-+| .+.++||-++.+.+....|+ .-+.|+|++ +|.+.++|.|.
T Consensus 425 PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGN 501 (514)
T KOG2055|consen 425 PKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGN 501 (514)
T ss_pred CCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeec
Confidence 5788888888889999999999 8877555 58899999999988877776 457899999 99999999884
No 143
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.62 E-value=3.7e-14 Score=148.39 Aligned_cols=229 Identities=14% Similarity=0.191 Sum_probs=168.4
Q ss_pred EEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec----ceEeecCCCccEecccCCC
Q 006825 293 CLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSG 368 (630)
Q Consensus 293 ~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~t 368 (630)
-.|++-..|.-|+|.-.++ +|+.- ...-.+-||+..|..++|.| .+||||.|.+|. ||.+-.
T Consensus 48 Avi~easgGgaf~ViPl~k-----------~Gr~d--~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~-vW~IPe 113 (472)
T KOG0303|consen 48 AVIIEASGGGAFLVIPLVK-----------TGRMD--ASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVM-VWQIPE 113 (472)
T ss_pred EEEEecCCCcceeeccccc-----------ccccC--CCCCCccCccccccccccCccCCceeecCCCCceEE-EEECCC
Confidence 5677777777787766544 44332 22355789999999999999 699999999999 998754
Q ss_pred C-------ceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCC
Q 006825 369 G-------GMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCK 441 (630)
Q Consensus 369 G-------~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~ 441 (630)
+ +....|. ||.+.|.-|+|.|.- ..+|++++.|.+|.+|++.++
T Consensus 114 ~~l~~~ltepvv~L~-gH~rrVg~V~wHPtA----------------------------~NVLlsag~Dn~v~iWnv~tg 164 (472)
T KOG0303|consen 114 NGLTRDLTEPVVELY-GHQRRVGLVQWHPTA----------------------------PNVLLSAGSDNTVSIWNVGTG 164 (472)
T ss_pred cccccCcccceEEEe-ecceeEEEEeecccc----------------------------hhhHhhccCCceEEEEeccCC
Confidence 3 2355666 999999999999852 355788999999999999988
Q ss_pred cccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccc-eEEEEECCCCCEEEE
Q 006825 442 DLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNM-LLLANGSPEPTSLSP 520 (630)
Q Consensus 442 el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~-V~svafSpdg~~las 520 (630)
+. +-+|. |.+.|+++.|+.||.+|+|.+.|+.|||||.++++.+.+- .+|.+. -..+.|-.++.++.+
T Consensus 165 ea-----li~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~-----~~heG~k~~Raifl~~g~i~tT 233 (472)
T KOG0303|consen 165 EA-----LITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG-----VAHEGAKPARAIFLASGKIFTT 233 (472)
T ss_pred ce-----eeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeec-----ccccCCCcceeEEeccCceeee
Confidence 63 34566 9999999999999999999999999999999999988773 456543 334556677885555
Q ss_pred ee---CCCeeeeecccccccccccccCccccccEEEeCC--CCc--eEEeccCCCCEEEEEEcCC-CeE-EEEECCCcEE
Q 006825 521 KH---LDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS--DKP--ICSFQGHLDDVLDLSWSKS-QHL-LSSSMDKTVR 591 (630)
Q Consensus 521 gs---~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdls--gk~--l~tL~GHs~~V~sLafSPd-~~L-aSgS~DgtVr 591 (630)
|. .+..+ .+|+.. .++ +.+|. -...|.---|.++ +++ +.|-.|+.||
T Consensus 234 Gfsr~seRq~-----------------------aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IR 289 (472)
T KOG0303|consen 234 GFSRMSERQI-----------------------ALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIR 289 (472)
T ss_pred ccccccccce-----------------------eccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceE
Confidence 53 22334 556652 122 23333 2334555556777 554 5667799999
Q ss_pred EEeCCCCc
Q 006825 592 LWHLSSKT 599 (630)
Q Consensus 592 IWDl~tg~ 599 (630)
.|.+....
T Consensus 290 YyEit~d~ 297 (472)
T KOG0303|consen 290 YFEITNEP 297 (472)
T ss_pred EEEecCCC
Confidence 99987655
No 144
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.62 E-value=4.6e-13 Score=143.64 Aligned_cols=266 Identities=10% Similarity=0.074 Sum_probs=201.3
Q ss_pred EEEEcCCCceEeeecceeeecCc-cceeEEEeec--ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCC
Q 006825 317 KVKEVGTGRQLTIEEFEMCVGHS-PIVQELMRRQ--NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGH 393 (630)
Q Consensus 317 ~l~dv~TG~~lt~eef~~l~GHs-~~V~~Lafs~--~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~ 393 (630)
.+|...+|-.. +....+.++. ..|.++.|.+ .+++|-.++++- ||+..+.+..+... .|.+.|.++..-.+|+
T Consensus 225 ~Fw~~~~~~l~--k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~-Iw~~~~~~~~k~~~-aH~ggv~~L~~lr~Gt 300 (626)
T KOG2106|consen 225 YFWTLRGGSLV--KRQGIFEKREKKFVLCVTFLENGDVITGDSGGNIL-IWSKGTNRISKQVH-AHDGGVFSLCMLRDGT 300 (626)
T ss_pred EEEEccCCceE--EEeeccccccceEEEEEEEcCCCCEEeecCCceEE-EEeCCCceEEeEee-ecCCceEEEEEecCcc
Confidence 57887777655 2223333433 6799999999 799999999999 99997777777777 8999999999999998
Q ss_pred eEEeecCCC-----C-------CccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEE
Q 006825 394 KERRSSDER-----D-------TSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWS 461 (630)
Q Consensus 394 ~lasgS~D~-----d-------t~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~s 461 (630)
++- |..|+ + .-.++.....+..+.-....++.|.....|..=.+..+ ...+..+|....+.
T Consensus 301 llS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~------f~~~v~gh~delwg 373 (626)
T KOG2106|consen 301 LLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENG------FTLTVQGHGDELWG 373 (626)
T ss_pred Eee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCC------ceEEEEecccceee
Confidence 776 88887 1 11144455566666655555777777777765555433 23567899999999
Q ss_pred EEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccccccccccc
Q 006825 462 IKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSL 541 (630)
Q Consensus 462 VaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~ 541 (630)
++.+|+...|+|++.|+.++||+ ..+.+.. ..-..++.++.|+|.| .++.|...|.+
T Consensus 374 la~hps~~q~~T~gqdk~v~lW~--~~k~~wt------~~~~d~~~~~~fhpsg-~va~Gt~~G~w-------------- 430 (626)
T KOG2106|consen 374 LATHPSKNQLLTCGQDKHVRLWN--DHKLEWT------KIIEDPAECADFHPSG-VVAVGTATGRW-------------- 430 (626)
T ss_pred EEcCCChhheeeccCcceEEEcc--CCceeEE------EEecCceeEeeccCcc-eEEEeeccceE--------------
Confidence 99999999999999999999999 3333333 2234678899999999 89999988877
Q ss_pred ccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCC-cEEEEEe--cCCceEEEE-cC
Q 006825 542 SLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK-TCLKIFS--HSDYDISLV-DR 616 (630)
Q Consensus 542 s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg-~~l~t~~--H~~~V~sVa-s~ 616 (630)
.+.+...+.+.++..-..+++++.|+|+ .+||.|+.|+.|+||.+... ..+..+. |..+|+.+. ++
T Consensus 431 ---------~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~ 501 (626)
T KOG2106|consen 431 ---------FVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSS 501 (626)
T ss_pred ---------EEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecC
Confidence 6666644555555545889999999999 99999999999999999764 4444444 778888888 77
Q ss_pred CCcEEEEec
Q 006825 617 LMLRFAYGA 625 (630)
Q Consensus 617 ~~~~lAsgs 625 (630)
+..++.+-+
T Consensus 502 Ds~~~~~~S 510 (626)
T KOG2106|consen 502 DSQFLVSNS 510 (626)
T ss_pred CCceEEecc
Confidence 766666543
No 145
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.61 E-value=6.7e-13 Score=136.17 Aligned_cols=232 Identities=24% Similarity=0.290 Sum_probs=180.1
Q ss_pred eeecCccceeEEEeec---ceEeecCCCccEecccCCCCc-eeEEecCCccCCEEEEEE-cCCCCeEEeecCCCCCcccc
Q 006825 334 MCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGG-MKSKKKGSWFKSIRTVAS-SVTGHKERRSSDERDTSSEK 408 (630)
Q Consensus 334 ~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~-~~~~lk~gH~~~V~sVAf-SpdG~~lasgS~D~dt~s~~ 408 (630)
.+.+|...|..+.|.+ .++.++.|+.+. +|+...+. ....+...+...+..+.+ .+++..++
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 126 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIK-LWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSIL------------ 126 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEE-EEEcCCCceeEEEEeccCCCceeeEEEECCCcceEE------------
Confidence 4678999999999987 678888999999 99998887 666766224346666666 66554111
Q ss_pred CCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeC-CCcEEEEECcC
Q 006825 409 GGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE-DCVIHVWQVVE 487 (630)
Q Consensus 409 gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~-DgtIrVWDl~t 487 (630)
+..+..++.+++|+.... ......+..|...|..++|+|+++++++++. |+.+++|++..
T Consensus 127 ---------------~~~~~~d~~~~~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (466)
T COG2319 127 ---------------LASSSLDGTVKLWDLSTP----GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT 187 (466)
T ss_pred ---------------eccCCCCccEEEEEecCC----CeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCC
Confidence 122344789999998751 1246778999999999999999999999986 99999999998
Q ss_pred CceeeeeecccccCcccceEEEEECCCCC-EEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceE-Eec
Q 006825 488 SERKGELLEKQEDGHLNMLLLANGSPEPT-SLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPIC-SFQ 564 (630)
Q Consensus 488 g~~~~~l~~~~~~gh~~~V~svafSpdg~-~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~-tL~ 564 (630)
+..+..+ .+|...+..++|+|++. ++++++.|+.| .+|+. .+..+. .+.
T Consensus 188 ~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~d~~i-----------------------~~wd~~~~~~~~~~~~ 239 (466)
T COG2319 188 GKPLSTL-----AGHTDPVSSLAFSPDGGLLIASGSSDGTI-----------------------RLWDLSTGKLLRSTLS 239 (466)
T ss_pred CceEEee-----ccCCCceEEEEEcCCcceEEEEecCCCcE-----------------------EEEECCCCcEEeeecC
Confidence 6666664 66999999999999998 55555889988 56665 456666 688
Q ss_pred cCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcE-EEEEe-cCCceEEEE-cCCCcEEEEecc
Q 006825 565 GHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTC-LKIFS-HSDYDISLV-DRLMLRFAYGAF 626 (630)
Q Consensus 565 GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~-l~t~~-H~~~V~sVa-s~~~~~lAsgs~ 626 (630)
+|...+ -..|+|+ .++++++.|+.+++|++..... +..+. |...|.++. .|....+++++.
T Consensus 240 ~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 304 (466)
T COG2319 240 GHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSS 304 (466)
T ss_pred CCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeC
Confidence 999886 4489999 7999999999999999997665 55554 899999998 776666666543
No 146
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.61 E-value=7.7e-14 Score=142.01 Aligned_cols=218 Identities=12% Similarity=0.031 Sum_probs=168.9
Q ss_pred eeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCC--eEEeecCCC-----C
Q 006825 334 MCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGH--KERRSSDER-----D 403 (630)
Q Consensus 334 ~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~--~lasgS~D~-----d 403 (630)
....|...|..++|+. .+++|+.|+.++ +||+.+|+ ..++. .|...|+++.|-+... .|++||.|| |
T Consensus 67 a~~~~~~PvL~v~WsddgskVf~g~~Dk~~k-~wDL~S~Q-~~~v~-~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD 143 (347)
T KOG0647|consen 67 AQQSHDGPVLDVCWSDDGSKVFSGGCDKQAK-LWDLASGQ-VSQVA-AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWD 143 (347)
T ss_pred hhhccCCCeEEEEEccCCceEEeeccCCceE-EEEccCCC-eeeee-ecccceeEEEEecCCCcceeEecccccceeecc
Confidence 3456889999999998 799999999999 99999994 44555 8999999999998666 799999998 4
Q ss_pred Ccc-----ccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccC----cCEEEEEEccCCCEEEEE
Q 006825 404 TSS-----EKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHN----GSIWSIKFSLDGRYLASA 474 (630)
Q Consensus 404 t~s-----~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt----~~V~sVaFSpDG~~LASg 474 (630)
+.+ ...-...|.+++.-...++.+..+..|.+|+++.+. .+++.|. -.+.||+..+|....|-|
T Consensus 144 ~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~-------te~k~~~SpLk~Q~R~va~f~d~~~~alG 216 (347)
T KOG0647|consen 144 TRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPP-------TEFKRIESPLKWQTRCVACFQDKDGFALG 216 (347)
T ss_pred cCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCc-------chhhhhcCcccceeeEEEEEecCCceEee
Confidence 332 112233567777777778888899999999997652 2233333 358999999988888999
Q ss_pred eCCCcEEEEECcCCceeeeeecccccCc---------ccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCc
Q 006825 475 GEDCVIHVWQVVESERKGELLEKQEDGH---------LNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDH 545 (630)
Q Consensus 475 S~DgtIrVWDl~tg~~~~~l~~~~~~gh---------~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~ 545 (630)
+-.|.+-|-.+..+.....+. +..| ...|..|+|+|....|++++.||++
T Consensus 217 siEGrv~iq~id~~~~~~nFt---FkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf------------------ 275 (347)
T KOG0647|consen 217 SIEGRVAIQYIDDPNPKDNFT---FKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTF------------------ 275 (347)
T ss_pred eecceEEEEecCCCCccCcee---EEEeccCCCCCCceEEecceEeecccceEEEecCCceE------------------
Confidence 999999999998764333322 1222 3457789999999999999999999
Q ss_pred cccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEE-ECC
Q 006825 546 MVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSS-SMD 587 (630)
Q Consensus 546 ~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSg-S~D 587 (630)
.+||- ....+++.+.|..+|++.+|+.+ .++|-+ +.|
T Consensus 276 -----~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 276 -----SFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred -----EEecchhhhhhhccCcCCCccceeEecCCCCEEEEEeecc
Confidence 66766 45677888889999999999998 777644 445
No 147
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=1e-13 Score=157.15 Aligned_cols=220 Identities=14% Similarity=0.118 Sum_probs=180.5
Q ss_pred ecCCccCCEEEEEEcCCCCeEEeecCCCCCcc------------ccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCc
Q 006825 375 KKGSWFKSIRTVASSVTGHKERRSSDERDTSS------------EKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKD 442 (630)
Q Consensus 375 lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s------------~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~e 442 (630)
++..|+.....|+|.|+|+.|.+++.|+++.. ...+...|.+++.....+++++.+.+|.+|....++
T Consensus 8 lRyaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 8 LRYAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred chhhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCC
Confidence 34589999999999999999999888873222 222666788888877789999999999999987775
Q ss_pred ccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEee
Q 006825 443 LTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKH 522 (630)
Q Consensus 443 l~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs 522 (630)
.. ..|..-+-++.+++|+.+|+++|.||.|-.|||-++.+......+ .+|..+|.++.|+|.+.+||+.+
T Consensus 88 ~~-----~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~l-----rgh~apVl~l~~~p~~~fLAvss 157 (933)
T KOG1274|consen 88 ED-----TILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVL-----RGHDAPVLQLSYDPKGNFLAVSS 157 (933)
T ss_pred cc-----ceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheee-----cccCCceeeeeEcCCCCEEEEEe
Confidence 42 234556778999999999999999999999999999988877774 89999999999999999999999
Q ss_pred CCCeeeeecccccccccccccCccccccEEEeC-CCCceEEecc--------CCCCEEEEEEcCC-CeEEEEECCCcEEE
Q 006825 523 LDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQG--------HLDDVLDLSWSKS-QHLLSSSMDKTVRL 592 (630)
Q Consensus 523 ~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~G--------Hs~~V~sLafSPd-~~LaSgS~DgtVrI 592 (630)
.||+| ++|++ ++.+..++.+ -...+..++|+|+ +.|+..+.|++|++
T Consensus 158 ~dG~v-----------------------~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkv 214 (933)
T KOG1274|consen 158 CDGKV-----------------------QIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKV 214 (933)
T ss_pred cCceE-----------------------EEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEE
Confidence 99999 55555 3333333322 1455788999999 99999999999999
Q ss_pred EeCCCCcEEEEEe---cCCceEEEE-cCCCcEEEEecce
Q 006825 593 WHLSSKTCLKIFS---HSDYDISLV-DRLMLRFAYGAFL 627 (630)
Q Consensus 593 WDl~tg~~l~t~~---H~~~V~sVa-s~~~~~lAsgs~~ 627 (630)
++....+.+..+. |...+.+++ +|.|.+||++...
T Consensus 215 y~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~ 253 (933)
T KOG1274|consen 215 YSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLD 253 (933)
T ss_pred EccCCceeheeecccccccceEEEEEcCCCcEEeeeccC
Confidence 9999999999886 444477777 9999999998654
No 148
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=2.3e-14 Score=152.48 Aligned_cols=223 Identities=17% Similarity=0.163 Sum_probs=165.9
Q ss_pred eEeecCCCc-cEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecC
Q 006825 351 VEEGNKDSF-DLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQE 429 (630)
Q Consensus 351 laSgS~D~t-vr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~ 429 (630)
+.++|.|.. ++ +||+.||...-+++++-...=.++.. ..++|+++ +-..
T Consensus 10 ~sssS~d~~~~~-~~dl~TGt~~~~ykg~~~a~~~sl~~-l~~~ylls----------------------------aq~~ 59 (476)
T KOG0646|consen 10 CSSSSFDPINCI-VWDLRTGTSLLQYKGSYLAQAASLTA-LNNEYLLS----------------------------AQLK 59 (476)
T ss_pred EeccCCCCccee-EEecCCCceeEEecCcccccchhhhh-hchhheee----------------------------eccc
Confidence 456677877 66 99999999999888421110000000 01133332 2223
Q ss_pred CcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEE
Q 006825 430 RVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLA 509 (630)
Q Consensus 430 Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~sv 509 (630)
.-.|.+|.+.-++...++ .--.++|.+++-+|+|.+|+.|..-+.|.+|.+.+|..+..+ .+|-..|+++
T Consensus 60 rp~l~vw~i~k~~~~~q~-----~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~-----~aHYQ~ITcL 129 (476)
T KOG0646|consen 60 RPLLHVWEILKKDQVVQY-----IVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVL-----SAHYQSITCL 129 (476)
T ss_pred CccccccccCchhhhhhh-----cccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHH-----HhhccceeEE
Confidence 346888887544332211 224578999999999999998889999999999999988774 8999999999
Q ss_pred EECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC---CeEEEEEC
Q 006825 510 NGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS---QHLLSSSM 586 (630)
Q Consensus 510 afSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd---~~LaSgS~ 586 (630)
.|+.|+.+|++++.||.|.+|...... +.+.. .+-++++.|..|+-.|+++...+. .+|+|+|.
T Consensus 130 ~fs~dgs~iiTgskDg~V~vW~l~~lv-----~a~~~--------~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~ 196 (476)
T KOG0646|consen 130 KFSDDGSHIITGSKDGAVLVWLLTDLV-----SADND--------HSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASE 196 (476)
T ss_pred EEeCCCcEEEecCCCccEEEEEEEeec-----ccccC--------CCccceeeeccCcceeEEEEecCCCccceEEEecC
Confidence 999999999999999999777643210 00000 034789999999999999988764 89999999
Q ss_pred CCcEEEEeCCCCcEEEEEecCCceEEEE-cCCCcEEEEecc
Q 006825 587 DKTVRLWHLSSKTCLKIFSHSDYDISLV-DRLMLRFAYGAF 626 (630)
Q Consensus 587 DgtVrIWDl~tg~~l~t~~H~~~V~sVa-s~~~~~lAsgs~ 626 (630)
|.|||+||+..|.++.++.-...+.+++ +|....+..|+.
T Consensus 197 D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~ 237 (476)
T KOG0646|consen 197 DRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTE 237 (476)
T ss_pred CceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCC
Confidence 9999999999999999999888899999 887777766643
No 149
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=1.7e-13 Score=151.27 Aligned_cols=223 Identities=15% Similarity=0.156 Sum_probs=176.2
Q ss_pred ceeEEEeec---ceEeecCCCccEecccCCCCc-eeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEE
Q 006825 341 IVQELMRRQ---NVEEGNKDSFDLNNNGSSGGG-MKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSA 416 (630)
Q Consensus 341 ~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~-~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa 416 (630)
.|.+|||+. .||.+=.|+.+- +|++..+= +...+.++-.+.|-++||++.|+
T Consensus 27 ~I~slA~s~kS~~lAvsRt~g~IE-iwN~~~~w~~~~vi~g~~drsIE~L~W~e~~R----------------------- 82 (691)
T KOG2048|consen 27 EIVSLAYSHKSNQLAVSRTDGNIE-IWNLSNNWFLEPVIHGPEDRSIESLAWAEGGR----------------------- 82 (691)
T ss_pred ceEEEEEeccCCceeeeccCCcEE-EEccCCCceeeEEEecCCCCceeeEEEccCCe-----------------------
Confidence 588999987 799999999999 99998765 44455545567889999986543
Q ss_pred eecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeec
Q 006825 417 TDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLE 496 (630)
Q Consensus 417 ~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~ 496 (630)
|++.+.+|+|.-||+.+.+ ....+..-.++||+|+.+|.+..|+.|++||.+...++..+......
T Consensus 83 -------LFS~g~sg~i~EwDl~~lk-----~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r-- 148 (691)
T KOG2048|consen 83 -------LFSSGLSGSITEWDLHTLK-----QKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKR-- 148 (691)
T ss_pred -------EEeecCCceEEEEecccCc-----eeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEe--
Confidence 4667778899999997664 34566777889999999999999999999998888888777655442
Q ss_pred ccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceE-------Eec-cCC
Q 006825 497 KQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPIC-------SFQ-GHL 567 (630)
Q Consensus 497 ~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~-------tL~-GHs 567 (630)
.+....+.|.++.|+|++..++.|+.||.| ++|+. ++..++ .+. +-.
T Consensus 149 -~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~I-----------------------riwd~~~~~t~~~~~~~~d~l~k~~~ 204 (691)
T KOG2048|consen 149 -SLMRQKSRVLSLSWNPTGTKIAGGSIDGVI-----------------------RIWDVKSGQTLHIITMQLDRLSKREP 204 (691)
T ss_pred -ecccccceEEEEEecCCccEEEecccCceE-----------------------EEEEcCCCceEEEeeecccccccCCc
Confidence 245557899999999999999999999999 56665 333333 111 122
Q ss_pred CCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcEEEEec
Q 006825 568 DDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLRFAYGA 625 (630)
Q Consensus 568 ~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~lAsgs 625 (630)
--|++|.|-.++.|++|-.-|+|++||...|++++.+. |..-|.|++ .++..++.+++
T Consensus 205 ~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaG 264 (691)
T KOG2048|consen 205 TIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAG 264 (691)
T ss_pred eEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEcc
Confidence 34788888877999999999999999999999999999 999999999 66655555554
No 150
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.60 E-value=1.1e-14 Score=155.78 Aligned_cols=224 Identities=16% Similarity=0.126 Sum_probs=179.0
Q ss_pred ECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeE
Q 006825 297 NLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKS 373 (630)
Q Consensus 297 ~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~ 373 (630)
-+.||+.++|..+ ..+..+||+++-.+-.- ..|.--.+.-++|+.+| ...+...|+.|+ |||+.+...++
T Consensus 473 L~pdgrtLivGGe---astlsiWDLAapTprik---aeltssapaCyALa~spDakvcFsccsdGnI~-vwDLhnq~~Vr 545 (705)
T KOG0639|consen 473 LLPDGRTLIVGGE---ASTLSIWDLAAPTPRIK---AELTSSAPACYALAISPDAKVCFSCCSDGNIA-VWDLHNQTLVR 545 (705)
T ss_pred ecCCCceEEeccc---cceeeeeeccCCCcchh---hhcCCcchhhhhhhcCCccceeeeeccCCcEE-EEEcccceeee
Confidence 3689999988653 55678999986443311 23444456778899999 677889999999 99999999999
Q ss_pred EecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEec
Q 006825 374 KKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQ 453 (630)
Q Consensus 374 ~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~ 453 (630)
.|+ ||.+.+.|+..++||..| |+|+-|.+||.||+..+. .+.
T Consensus 546 qfq-GhtDGascIdis~dGtkl-----------------------------WTGGlDntvRcWDlregr--------qlq 587 (705)
T KOG0639|consen 546 QFQ-GHTDGASCIDISKDGTKL-----------------------------WTGGLDNTVRCWDLREGR--------QLQ 587 (705)
T ss_pred ccc-CCCCCceeEEecCCCcee-----------------------------ecCCCccceeehhhhhhh--------hhh
Confidence 999 999999999999988655 899999999999997653 234
Q ss_pred cc--CcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeec
Q 006825 454 AH--NGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKR 531 (630)
Q Consensus 454 gH--t~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~ 531 (630)
.| +..|.++-+.|.+.+||.|-+.+.+.|-.....+ ..+ +..|...|.++.|.+.|+++++.+.|..+
T Consensus 588 qhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~-kyq-----lhlheScVLSlKFa~cGkwfvStGkDnlL---- 657 (705)
T KOG0639|consen 588 QHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE-KYQ-----LHLHESCVLSLKFAYCGKWFVSTGKDNLL---- 657 (705)
T ss_pred hhhhhhhheecccCCCccceeeecccCcEEEEecCCcc-cee-----ecccccEEEEEEecccCceeeecCchhhh----
Confidence 44 4679999999999999999999988887775433 333 36788999999999999999999999988
Q ss_pred ccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeC
Q 006825 532 RGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHL 595 (630)
Q Consensus 532 ~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl 595 (630)
..|.. -|..+...+ ....|+++..+-| +|++|||.|+...+|.+
T Consensus 658 -------------------nawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 658 -------------------NAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred -------------------hhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 44544 455554444 4567999999988 99999999998888865
No 151
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=8.9e-15 Score=168.94 Aligned_cols=209 Identities=15% Similarity=0.190 Sum_probs=160.1
Q ss_pred ceEeecCCCccEecccCCC---Cc---eeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCe
Q 006825 350 NVEEGNKDSFDLNNNGSSG---GG---MKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDV 423 (630)
Q Consensus 350 ~laSgS~D~tvr~vWD~~t---G~---~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~ 423 (630)
.+|.|..||+|- +||... +. .+.++. .|.+.|+.+-|.+.+. ..
T Consensus 82 lIaGG~edG~I~-ly~p~~~~~~~~~~~la~~~-~h~G~V~gLDfN~~q~----------------------------nl 131 (1049)
T KOG0307|consen 82 LIAGGLEDGNIV-LYDPASIIANASEEVLATKS-KHTGPVLGLDFNPFQG----------------------------NL 131 (1049)
T ss_pred eeeccccCCceE-EecchhhccCcchHHHhhhc-ccCCceeeeeccccCC----------------------------ce
Confidence 488999999999 999865 22 344555 7999999888888532 23
Q ss_pred EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc-CCCEEEEEeCCCcEEEEECcCCceeeeeecccccCc
Q 006825 424 SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGH 502 (630)
Q Consensus 424 l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp-DG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh 502 (630)
+++|..+|.|.|||+...+...... -..-.+.|.+|+|+. ....||+++.+|++-|||++..+.+-.+- ..+-
T Consensus 132 LASGa~~geI~iWDlnn~~tP~~~~---~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls---~~~~ 205 (1049)
T KOG0307|consen 132 LASGADDGEILIWDLNKPETPFTPG---SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLS---DTPG 205 (1049)
T ss_pred eeccCCCCcEEEeccCCcCCCCCCC---CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccc---cCCC
Confidence 5778888999999997643211110 123467899999988 46689999999999999999876665541 1122
Q ss_pred ccceEEEEECCCC-CEEEEeeCCCeeeeecccccccccccccCccccccEEEeC--CCCceEEeccCCCCEEEEEEcCC-
Q 006825 503 LNMLLLANGSPEP-TSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL--SDKPICSFQGHLDDVLDLSWSKS- 578 (630)
Q Consensus 503 ~~~V~svafSpdg-~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl--sgk~l~tL~GHs~~V~sLafSPd- 578 (630)
...+..++|+|+. ..+++++.|... ..+ .+||+ ...++++|++|...|.+|.|.+.
T Consensus 206 ~~~~S~l~WhP~~aTql~~As~dd~~-----------------Pvi---qlWDlR~assP~k~~~~H~~GilslsWc~~D 265 (1049)
T KOG0307|consen 206 RMHCSVLAWHPDHATQLLVASGDDSA-----------------PVI---QLWDLRFASSPLKILEGHQRGILSLSWCPQD 265 (1049)
T ss_pred ccceeeeeeCCCCceeeeeecCCCCC-----------------cee---EeecccccCCchhhhcccccceeeeccCCCC
Confidence 2457899999994 456666655532 011 78887 56889999999999999999985
Q ss_pred -CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE
Q 006825 579 -QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV 614 (630)
Q Consensus 579 -~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa 614 (630)
.+|+|++.|+.|.+|+..+++.+..|. ..+++..|.
T Consensus 266 ~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~ 303 (1049)
T KOG0307|consen 266 PRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQ 303 (1049)
T ss_pred chhhhcccCCCCeeEecCCCceEeeecCCCCcceeeee
Confidence 899999999999999999999999998 889998888
No 152
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.59 E-value=6.4e-14 Score=153.54 Aligned_cols=259 Identities=15% Similarity=0.099 Sum_probs=200.7
Q ss_pred EEEEC---CCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCC
Q 006825 294 LIKNL---DNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSS 367 (630)
Q Consensus 294 ~I~~L---ddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~ 367 (630)
.|.|+ .||.++++... ....+.|+..|.++ ++|.||.+.|.++|++. ..|||+.|+.|. +|..
T Consensus 14 ci~d~afkPDGsqL~lAAg----~rlliyD~ndG~ll-----qtLKgHKDtVycVAys~dGkrFASG~aDK~VI-~W~~- 82 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG----SRLLVYDTSDGTLL-----QPLKGHKDTVYCVAYAKDGKRFASGSADKSVI-IWTS- 82 (1081)
T ss_pred chheeEECCCCceEEEecC----CEEEEEeCCCcccc-----cccccccceEEEEEEccCCceeccCCCceeEE-Eecc-
Confidence 44554 79999998754 33679999999999 99999999999999997 799999999999 9954
Q ss_pred CCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC------CCccc--cCCcceEEEeecCCCe--EEEecCCcEEEEEe
Q 006825 368 GGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER------DTSSE--KGGRRSSSATDDSQDV--SFHGQERVRVRQYG 437 (630)
Q Consensus 368 tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~------dt~s~--~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd 437 (630)
+....++..|...|.|+.|.|-.+.|++.+-.. +.... ..-...+.+-++..|+ ++-|-.+|+|-+-+
T Consensus 83 --klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRN 160 (1081)
T KOG1538|consen 83 --KLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRN 160 (1081)
T ss_pred --cccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeec
Confidence 556677779999999999999989998876433 11112 2223456677888888 88899999999987
Q ss_pred CCCCcccceeeeeEecccCcCEEEEEEccCC-----CEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEEC
Q 006825 438 KSCKDLTALYKCQEIQAHNGSIWSIKFSLDG-----RYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGS 512 (630)
Q Consensus 438 ~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG-----~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafS 512 (630)
+...+- ..++.--|...+|++|+|+|.. ..++...+..|+-.+.+. |+.+..- ..-.-...++.+.
T Consensus 161 k~gEek---~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~-----r~L~FdP~CisYf 231 (1081)
T KOG1538|consen 161 KNGEEK---VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKD-----RALNFDPCCISYF 231 (1081)
T ss_pred CCCCcc---eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeeccc-----ccCCCCchhheec
Confidence 654331 1234445788999999999953 367777777888877774 4433321 1111223478899
Q ss_pred CCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEE
Q 006825 513 PEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVR 591 (630)
Q Consensus 513 pdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVr 591 (630)
+.|.+++.|+.|+.+ .+|.-.|-.+.++-....+|+.++..|+ ++++-|+.||||-
T Consensus 232 ~NGEy~LiGGsdk~L-----------------------~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiA 288 (1081)
T KOG1538|consen 232 TNGEYILLGGSDKQL-----------------------SLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIA 288 (1081)
T ss_pred cCCcEEEEccCCCce-----------------------EEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeee
Confidence 999999999999998 7777777788888777789999999999 9999999999999
Q ss_pred EEeCCC
Q 006825 592 LWHLSS 597 (630)
Q Consensus 592 IWDl~t 597 (630)
-|++..
T Consensus 289 CyNl~f 294 (1081)
T KOG1538|consen 289 CYNLIF 294 (1081)
T ss_pred hhhhHH
Confidence 998753
No 153
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.59 E-value=4e-14 Score=151.27 Aligned_cols=208 Identities=15% Similarity=0.066 Sum_probs=166.3
Q ss_pred ceeEEEeecceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCcc-----------ccC
Q 006825 341 IVQELMRRQNVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSS-----------EKG 409 (630)
Q Consensus 341 ~V~~Lafs~~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s-----------~~g 409 (630)
.|.+..|+-++++|+..++|+ |||+....+.+.++ +|...|.+|-+.-...|||+++..+|... +..
T Consensus 84 Cv~~~s~S~y~~sgG~~~~Vk-iwdl~~kl~hr~lk-dh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~ 161 (673)
T KOG4378|consen 84 CVACASQSLYEISGGQSGCVK-IWDLRAKLIHRFLK-DHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTI 161 (673)
T ss_pred HHhhhhcceeeeccCcCceee-ehhhHHHHHhhhcc-CCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceec
Confidence 355566667899999999999 99999766777777 99999999999998899999998874211 333
Q ss_pred C-cceEEEeecCCCe---EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc-CCCEEEEEeCCCcEEEEE
Q 006825 410 G-RRSSSATDDSQDV---SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQ 484 (630)
Q Consensus 410 h-~~~Vsa~~~s~d~---l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp-DG~~LASgS~DgtIrVWD 484 (630)
. ...|.-+.+++.- |.+++++|.|.+||+..... ..+-.+.|..+...|+|+| +..+|+|.|.|+.|.+||
T Consensus 162 ~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp----~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD 237 (673)
T KOG4378|consen 162 DSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSP----IFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYD 237 (673)
T ss_pred CCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCc----ccchhhhccCCcCcceecCCccceEEEecccceEEEee
Confidence 3 2234466666544 88999999999999987643 2244688999999999999 667899999999999999
Q ss_pred CcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC--CCCceEE
Q 006825 485 VVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL--SDKPICS 562 (630)
Q Consensus 485 l~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl--sgk~l~t 562 (630)
+........+ ....+...++|.++|.+|+.|...|.| ..+|+ ...++.+
T Consensus 238 ~~s~~s~~~l------~y~~Plstvaf~~~G~~L~aG~s~G~~-----------------------i~YD~R~~k~Pv~v 288 (673)
T KOG4378|consen 238 IRSQASTDRL------TYSHPLSTVAFSECGTYLCAGNSKGEL-----------------------IAYDMRSTKAPVAV 288 (673)
T ss_pred ccccccccee------eecCCcceeeecCCceEEEeecCCceE-----------------------EEEecccCCCCceE
Confidence 9866555543 344678899999999999999999988 67777 5578999
Q ss_pred eccCCCCEEEEEEcCCCeEEE
Q 006825 563 FQGHLDDVLDLSWSKSQHLLS 583 (630)
Q Consensus 563 L~GHs~~V~sLafSPd~~LaS 583 (630)
+..|...|++|+|-|...+++
T Consensus 289 ~sah~~sVt~vafq~s~tvlt 309 (673)
T KOG4378|consen 289 RSAHDASVTRVAFQPSPTVLT 309 (673)
T ss_pred eeecccceeEEEeeecceeee
Confidence 999999999999977644443
No 154
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.58 E-value=8.9e-14 Score=146.05 Aligned_cols=252 Identities=14% Similarity=0.139 Sum_probs=176.5
Q ss_pred cceeEEEeec----ceEeecCCCccEecccCCCCce---------eEEecCCccCCEEEEEEcCCCCeEEeecCCCCCcc
Q 006825 340 PIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGM---------KSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSS 406 (630)
Q Consensus 340 ~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~---------~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s 406 (630)
..|..+-|.+ .+|||+.|..|| +|-+..+.. +..|. +|.+.|+.|-|+|+|.+||+|
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~ir-iW~v~r~~~~~~~~~V~y~s~Ls-~H~~aVN~vRf~p~gelLASg-------- 83 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIR-IWKVNRSEPGGGDMKVEYLSSLS-RHTRAVNVVRFSPDGELLASG-------- 83 (434)
T ss_pred CceEEEEeccCcccceecccCcccee-eeeeeecCCCCCceeEEEeeccc-CCcceeEEEEEcCCcCeeeec--------
Confidence 3466666765 689999999999 998765432 22444 788888888888888777554
Q ss_pred ccCCcceEEEeecCCCeEEEecCCcEEEEEeCC--------CC-c--ccceeeeeEecccCcCEEEEEEccCCCEEEEEe
Q 006825 407 EKGGRRSSSATDDSQDVSFHGQERVRVRQYGKS--------CK-D--LTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG 475 (630)
Q Consensus 407 ~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~--------~~-e--l~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS 475 (630)
+.++.|.+|... +. + .........+.+|...|+.++|+||+.+|++++
T Consensus 84 ---------------------~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s 142 (434)
T KOG1009|consen 84 ---------------------GDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGS 142 (434)
T ss_pred ---------------------CCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeee
Confidence 455567777654 20 0 111234567889999999999999999999999
Q ss_pred CCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccccc-----cc-------------
Q 006825 476 EDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRS-----IN------------- 537 (630)
Q Consensus 476 ~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~-----~~------------- 537 (630)
.|.++++||+..|.....+ .+|...+..++|.|..+++++-+.|.+.+....... ..
T Consensus 143 ~dns~~l~Dv~~G~l~~~~-----~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e 217 (434)
T KOG1009|consen 143 VDNSVRLWDVHAGQLLAIL-----DDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNERE 217 (434)
T ss_pred ccceEEEEEeccceeEeec-----cccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCC
Confidence 9999999999999988774 899999999999999999999888874332221110 00
Q ss_pred -----------------ccccccCccc--cccEEEeC----------------CCCceEEeccCCCCEEEEEEcCC----
Q 006825 538 -----------------RKSLSLDHMV--VPETVFAL----------------SDKPICSFQGHLDDVLDLSWSKS---- 578 (630)
Q Consensus 538 -----------------~~s~s~d~~i--~~~~Vwdl----------------sgk~l~tL~GHs~~V~sLafSPd---- 578 (630)
+.++++++.. .|..++.. ..+++..+.+....+..+.|+|-
T Consensus 218 ~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~el 297 (434)
T KOG1009|consen 218 GKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYEL 297 (434)
T ss_pred cceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEe
Confidence 0122333322 12222222 12455666666777777777651
Q ss_pred --------------CeEEEEECCCcEEEEeCCCCcEEEEEe--cCCceEEEE-cCCCcEEEEecce
Q 006825 579 --------------QHLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYDISLV-DRLMLRFAYGAFL 627 (630)
Q Consensus 579 --------------~~LaSgS~DgtVrIWDl~tg~~l~t~~--H~~~V~sVa-s~~~~~lAsgs~~ 627 (630)
+++..-..-+.|.|||.++-.++.... |-..++.++ ++++..++..+.+
T Consensus 298 rp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~D 363 (434)
T KOG1009|consen 298 RPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTD 363 (434)
T ss_pred ccccccccccccccceEEEEeecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccC
Confidence 122233344579999999999888886 999999999 8887777776654
No 155
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=2.1e-13 Score=139.53 Aligned_cols=263 Identities=15% Similarity=0.169 Sum_probs=184.5
Q ss_pred eeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCcc
Q 006825 261 MSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSP 340 (630)
Q Consensus 261 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~ 340 (630)
..||+.|.|| |.+=.++.+.||++++-. .- .+|.+|..
T Consensus 29 ~~Fs~~G~~l--------------AvGc~nG~vvI~D~~T~~-----------------------ia-----r~lsaH~~ 66 (405)
T KOG1273|consen 29 CQFSRWGDYL--------------AVGCANGRVVIYDFDTFR-----------------------IA-----RMLSAHVR 66 (405)
T ss_pred EEeccCccee--------------eeeccCCcEEEEEccccc-----------------------hh-----hhhhcccc
Confidence 5889999999 666666777777765432 11 45688999
Q ss_pred ceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCC--eEEeecCCC-------C-Ccc-
Q 006825 341 IVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGH--KERRSSDER-------D-TSS- 406 (630)
Q Consensus 341 ~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~--~lasgS~D~-------d-t~s- 406 (630)
+|++|++++ .|+|+|.|..+. +||+..|.++++++ ....|..+.|.|... .+|+-=... + +..
T Consensus 67 pi~sl~WS~dgr~LltsS~D~si~-lwDl~~gs~l~rir--f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~ 143 (405)
T KOG1273|consen 67 PITSLCWSRDGRKLLTSSRDWSIK-LWDLLKGSPLKRIR--FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSV 143 (405)
T ss_pred ceeEEEecCCCCEeeeecCCceeE-EEeccCCCceeEEE--ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceee
Confidence 999999999 899999999999 99999999998876 678888888888433 233311111 0 000
Q ss_pred -----ccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccC-cCEEEEEEccCCCEEEEEeCCC
Q 006825 407 -----EKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHN-GSIWSIKFSLDGRYLASAGEDC 478 (630)
Q Consensus 407 -----~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt-~~V~sVaFSpDG~~LASgS~Dg 478 (630)
...-.....+..|...+ +++|...|++.+|+..+-+ ++..++--+ ..|..|-|+..|++|+.-..|+
T Consensus 144 Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e-----~vas~rits~~~IK~I~~s~~g~~liiNtsDR 218 (405)
T KOG1273|consen 144 LPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLE-----CVASFRITSVQAIKQIIVSRKGRFLIINTSDR 218 (405)
T ss_pred ccCCCccccccccccccccCCCCEEEEecCcceEEEEecchhe-----eeeeeeechheeeeEEEEeccCcEEEEecCCc
Confidence 00001111112344444 9999999999999997765 455555444 7899999999999999999999
Q ss_pred cEEEEECcCCcee---eeee---cccccCcccceEEEEECCCCCEEEEeeCCCe-eeeecccccccccccccCccccccE
Q 006825 479 VIHVWQVVESERK---GELL---EKQEDGHLNMLLLANGSPEPTSLSPKHLDNH-LEKKRRGRSINRKSLSLDHMVVPET 551 (630)
Q Consensus 479 tIrVWDl~tg~~~---~~l~---~~~~~gh~~~V~svafSpdg~~lasgs~Dg~-I~i~~~~~~~~~~s~s~d~~i~~~~ 551 (630)
+||.+++..-... .++. .....-....-.+++|+.+|.++..++.-.+ + .
T Consensus 219 vIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaL-----------------------Y 275 (405)
T KOG1273|consen 219 VIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHAL-----------------------Y 275 (405)
T ss_pred eEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeE-----------------------E
Confidence 9999998632111 1110 0000001123357899999999988763332 3 7
Q ss_pred EEeC-CCCceEEeccCC-CCEEEEEEcCC-CeEEEEECCCcEEEEeCCC
Q 006825 552 VFAL-SDKPICSFQGHL-DDVLDLSWSKS-QHLLSSSMDKTVRLWHLSS 597 (630)
Q Consensus 552 Vwdl-sgk~l~tL~GHs-~~V~sLafSPd-~~LaSgS~DgtVrIWDl~t 597 (630)
||.- .|.+++.|.|.. ....++.|+|- ..+++- .-|+|+||....
T Consensus 276 IWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 276 IWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred EEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeec
Confidence 8887 799999999988 56789999998 667766 779999998643
No 156
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.56 E-value=2.3e-13 Score=137.84 Aligned_cols=237 Identities=18% Similarity=0.137 Sum_probs=173.1
Q ss_pred eeeecCccceeEEEeec----ceEeecCC---C---ccEecccCCC---------CceeEEecCCccCCEEEEEEcCCCC
Q 006825 333 EMCVGHSPIVQELMRRQ----NVEEGNKD---S---FDLNNNGSSG---------GGMKSKKKGSWFKSIRTVASSVTGH 393 (630)
Q Consensus 333 ~~l~GHs~~V~~Lafs~----~laSgS~D---~---tvr~vWD~~t---------G~~~~~lk~gH~~~V~sVAfSpdG~ 393 (630)
+.|..|.+-|+.|+-+| .|++.-+| . +-..||.+.. -+++..|...|.+.|.||-|-|++.
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~ 136 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD 136 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence 45677888999999888 45443321 1 2223786532 1233344435667889999999887
Q ss_pred eEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcc-cceeeeeEecccCcCEEEEEEcc--CCCE
Q 006825 394 KERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDL-TALYKCQEIQAHNGSIWSIKFSL--DGRY 470 (630)
Q Consensus 394 ~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el-~~~~~v~tL~gHt~~V~sVaFSp--DG~~ 470 (630)
++++- .|..|.+|++....- ........-.+|....++-+|+| ||+.
T Consensus 137 klasm------------------------------~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnq 186 (370)
T KOG1007|consen 137 KLASM------------------------------DDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQ 186 (370)
T ss_pred eeEEe------------------------------ccCceEEEEcccCcchheeecccccccccceecccccCCCCccce
Confidence 77532 255689998865432 11111111234778889999998 8999
Q ss_pred EEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCC-CCEEEEeeCCCeeeeecccccccccccccCccccc
Q 006825 471 LASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE-PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVP 549 (630)
Q Consensus 471 LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpd-g~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~ 549 (630)
+++.+ |++++.||+++..+...+ ...|...|..+.|.|. ..+|+++++|+.|
T Consensus 187 v~tt~-d~tl~~~D~RT~~~~~sI----~dAHgq~vrdlDfNpnkq~~lvt~gDdgyv---------------------- 239 (370)
T KOG1007|consen 187 VATTS-DSTLQFWDLRTMKKNNSI----EDAHGQRVRDLDFNPNKQHILVTCGDDGYV---------------------- 239 (370)
T ss_pred EEEeC-CCcEEEEEccchhhhcch----hhhhcceeeeccCCCCceEEEEEcCCCccE----------------------
Confidence 99866 799999999987776665 5789999999999998 5678889999999
Q ss_pred cEEEeC--CCCceEEeccCCCCEEEEEEcCC--CeEEEEECCCcEEEEeCCCC---------------------------
Q 006825 550 ETVFAL--SDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSK--------------------------- 598 (630)
Q Consensus 550 ~~Vwdl--sgk~l~tL~GHs~~V~sLafSPd--~~LaSgS~DgtVrIWDl~tg--------------------------- 598 (630)
++|+. +..++.++.+|+-.|++|.|+|- ++|+||+.|..|.||.+.+-
T Consensus 240 -riWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL 318 (370)
T KOG1007|consen 240 -RIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPL 318 (370)
T ss_pred -EEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccc
Confidence 77776 66899999999999999999996 89999999999999976321
Q ss_pred --cEEEEEe-cCCceEEEE--cCCCcEEEEecce
Q 006825 599 --TCLKIFS-HSDYDISLV--DRLMLRFAYGAFL 627 (630)
Q Consensus 599 --~~l~t~~-H~~~V~sVa--s~~~~~lAsgs~~ 627 (630)
..+.+|. |.+.|++++ +.+.-+||+-+++
T Consensus 319 ~dg~l~tydehEDSVY~~aWSsadPWiFASLSYD 352 (370)
T KOG1007|consen 319 QDGQLETYDEHEDSVYALAWSSADPWIFASLSYD 352 (370)
T ss_pred cccccccccccccceEEEeeccCCCeeEEEeccC
Confidence 1345676 999999999 5555566665543
No 157
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.55 E-value=2e-13 Score=149.82 Aligned_cols=247 Identities=15% Similarity=0.123 Sum_probs=183.9
Q ss_pred ceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCC----Ccc-----cc
Q 006825 341 IVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERD----TSS-----EK 408 (630)
Q Consensus 341 ~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~d----t~s-----~~ 408 (630)
.|..++|.| .|+-+.. ..+- ++|++.|..+.++| ||...|++||++.||+++++|+.|+- +.+ ..
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rll-iyD~ndG~llqtLK-gHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkY 90 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLL-VYDTSDGTLLQPLK-GHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKY 90 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEE-EEeCCCcccccccc-cccceEEEEEEccCCceeccCCCceeEEEecccccceeee
Confidence 788999999 3333333 4566 89999999999999 99999999999999999999999982 122 44
Q ss_pred CCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEeccc--CcCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 006825 409 GGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAH--NGSIWSIKFSLDGRYLASAGEDCVIHVWQ 484 (630)
Q Consensus 409 gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gH--t~~V~sVaFSpDG~~LASgS~DgtIrVWD 484 (630)
.|...|.|+.|.+.. +++.+- ...-+|....+.. ..| ...|.+.+|..||++|+-|-.||||.|-+
T Consensus 91 SH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V---------~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRN 160 (1081)
T KOG1538|consen 91 SHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKSV---------SKHKSSSRIICCSWTNDGQYLALGMFNGTISIRN 160 (1081)
T ss_pred ccCCeeeEeecCchHHHhhhcch-hhccccChhhhhH---------HhhhhheeEEEeeecCCCcEEEEeccCceEEeec
Confidence 588999999999877 555542 2345676654432 223 34578889999999999999999999987
Q ss_pred CcCCceeeeeecccccCcccceEEEEECCCCC-----EEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCc
Q 006825 485 VVESERKGELLEKQEDGHLNMLLLANGSPEPT-----SLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKP 559 (630)
Q Consensus 485 l~tg~~~~~l~~~~~~gh~~~V~svafSpdg~-----~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~ 559 (630)
-...+.+ .+ ....|...+|++++|+|... +++......++ ..+.++|+.
T Consensus 161 k~gEek~-~I--~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTL-----------------------SFy~LsG~~ 214 (1081)
T KOG1538|consen 161 KNGEEKV-KI--ERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTL-----------------------SFYQLSGKQ 214 (1081)
T ss_pred CCCCcce-EE--eCCCCCCCCceEEEecCCCCCCccceEEEEecccee-----------------------EEEEeccee
Confidence 6433322 21 11356778999999999732 23333333333 556667776
Q ss_pred eEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcEEEEecce
Q 006825 560 ICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLRFAYGAFL 627 (630)
Q Consensus 560 l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~lAsgs~~ 627 (630)
+..-..-.-.-.|+.+.++ .+++.|+.|+.++++- +.|-.+.++. ...+||.|+ .|++.+++.|-.+
T Consensus 215 Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqD 284 (1081)
T KOG1538|consen 215 IGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQD 284 (1081)
T ss_pred ecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEcc
Confidence 6544444445678999999 9999999999999994 6788899998 889999999 9999999888543
No 158
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.53 E-value=1.3e-13 Score=141.62 Aligned_cols=207 Identities=16% Similarity=0.175 Sum_probs=152.9
Q ss_pred ecceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEe
Q 006825 348 RQNVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHG 427 (630)
Q Consensus 348 s~~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sg 427 (630)
.|+||.|+.-+.|| |-|+.++++...+. ||...|+.+.|.|+- +..++++
T Consensus 105 ~p~la~~G~~GvIr-Vid~~~~~~~~~~~-ghG~sINeik~~p~~----------------------------~qlvls~ 154 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIR-VIDVVSGQCSKNYR-GHGGSINEIKFHPDR----------------------------PQLVLSA 154 (385)
T ss_pred CeeEEeecceeEEE-EEecchhhhcccee-ccCccchhhhcCCCC----------------------------CcEEEEe
Confidence 35688888999999 99999999999999 999999999999963 3345788
Q ss_pred cCCcEEEEEeCCCCcccceeeeeEe---cccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeee----------
Q 006825 428 QERVRVRQYGKSCKDLTALYKCQEI---QAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGEL---------- 494 (630)
Q Consensus 428 s~Dg~VriWd~~~~el~~~~~v~tL---~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l---------- 494 (630)
+.|-.||+|++++.. |+..| .||.+.|.++.|+++|.+|+|+|.|.+|++|++...+....+
T Consensus 155 SkD~svRlwnI~~~~-----Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~ 229 (385)
T KOG1034|consen 155 SKDHSVRLWNIQTDV-----CVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNK 229 (385)
T ss_pred cCCceEEEEeccCCe-----EEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCC
Confidence 888899999998764 45444 789999999999999999999999999999999743221111
Q ss_pred ------------ecc-cccCcccceEEEEECCCCCEEEEeeCCCeeeeecccc-cccccccccCccccccEEEeCCCCce
Q 006825 495 ------------LEK-QEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGR-SINRKSLSLDHMVVPETVFALSDKPI 560 (630)
Q Consensus 495 ------------~~~-~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~-~~~~~s~s~d~~i~~~~Vwdlsgk~l 560 (630)
+.. ...-|...|-++.|- |.++++-+-++.|..|..++ ......+.+.. .....+
T Consensus 230 t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~e---------s~~Ti~ 298 (385)
T KOG1034|consen 230 TTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPE---------SATTIL 298 (385)
T ss_pred ccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCc---------cceeee
Confidence 000 123455566666664 57888888888998888865 22211110000 011344
Q ss_pred EEeccCCCCEEEEEEcCC---CeEEEEECCCcEEEEeCCCCcE
Q 006825 561 CSFQGHLDDVLDLSWSKS---QHLLSSSMDKTVRLWHLSSKTC 600 (630)
Q Consensus 561 ~tL~GHs~~V~sLafSPd---~~LaSgS~DgtVrIWDl~tg~~ 600 (630)
.++.-....|+-+.|+-| ..||.|..-|.|.+||++....
T Consensus 299 ~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep 341 (385)
T KOG1034|consen 299 GEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEP 341 (385)
T ss_pred eEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCC
Confidence 556656667888887766 7899999999999999987655
No 159
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=2e-12 Score=132.21 Aligned_cols=253 Identities=14% Similarity=0.088 Sum_probs=192.4
Q ss_pred EEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec--ceEeecCCCccEecccCCCCcee
Q 006825 295 IKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ--NVEEGNKDSFDLNNNGSSGGGMK 372 (630)
Q Consensus 295 I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~--~laSgS~D~tvr~vWD~~tG~~~ 372 (630)
++--..+..++|..+ ||. .+|.++.+... ....-|..++...+|.+ .+++|+-|+.|| ..|+.++...
T Consensus 19 v~f~~~~~~LLvssW--Dgs-lrlYdv~~~~l------~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr-~~Dln~~~~~ 88 (323)
T KOG1036|consen 19 VKFSPSSSDLLVSSW--DGS-LRLYDVPANSL------KLKFKHGAPLLDCAFADESTIVTGGLDGQVR-RYDLNTGNED 88 (323)
T ss_pred EEEcCcCCcEEEEec--cCc-EEEEeccchhh------hhheecCCceeeeeccCCceEEEeccCceEE-EEEecCCcce
Confidence 333355666777665 665 56888876522 35566999999999999 899999999999 9999998876
Q ss_pred EEecCCccCCEEEEEEcCCCCeEEeecCCC-----CCcc-----ccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCc
Q 006825 373 SKKKGSWFKSIRTVASSVTGHKERRSSDER-----DTSS-----EKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKD 442 (630)
Q Consensus 373 ~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-----dt~s-----~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~e 442 (630)
.. +.|...|++|.+++.-..+++|+.|+ |... .......|.+++...+.|+.|..+.+|.+||+...+
T Consensus 89 ~i--gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 89 QI--GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLD 166 (323)
T ss_pred ee--ccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEccccc
Confidence 54 36999999999998777888999987 2221 222334899999999999999999999999998765
Q ss_pred ccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCc---------ccceEEEEECC
Q 006825 443 LTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGH---------LNMLLLANGSP 513 (630)
Q Consensus 443 l~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh---------~~~V~svafSp 513 (630)
... ...-..-+-.+.||++-|++.=.|.+|-||.|-+=.+...+.... ....+..| ..+|.+++|+|
T Consensus 167 ~~~---q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~s-kkyaFkCHr~~~~~~~~~yPVNai~Fhp 242 (323)
T KOG1036|consen 167 EPF---QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQS-KKYAFKCHRLSEKDTEIIYPVNAIAFHP 242 (323)
T ss_pred chh---hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhh-hceeEEeeecccCCceEEEEeceeEecc
Confidence 321 111234456799999999888889999999998866655422111 01112333 24688999999
Q ss_pred CCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEEC
Q 006825 514 EPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSM 586 (630)
Q Consensus 514 dg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~ 586 (630)
-...+++|+.||.| .+|++ ..+.++.|..-...|..++|+.+ ..||.++.
T Consensus 243 ~~~tfaTgGsDG~V-----------------------~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 243 IHGTFATGGSDGIV-----------------------NIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred ccceEEecCCCceE-----------------------EEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 99999999999999 77887 67888888888788999999999 88887764
No 160
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.52 E-value=1.7e-13 Score=148.69 Aligned_cols=205 Identities=15% Similarity=0.152 Sum_probs=152.1
Q ss_pred CeEEEecCCcEEEEEeC---CCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCC------ceee
Q 006825 422 DVSFHGQERVRVRQYGK---SCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVES------ERKG 492 (630)
Q Consensus 422 d~l~Sgs~Dg~VriWd~---~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg------~~~~ 492 (630)
..+++++.++++++|.+ .......+..+.+|.+|.++|.|+++.+.+..++|||-||+|+.|++... ....
T Consensus 307 p~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~ 386 (577)
T KOG0642|consen 307 PVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPS 386 (577)
T ss_pred CeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcc
Confidence 34789999999999998 22223345578899999999999999999999999999999999976421 1111
Q ss_pred eeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccc---------cccCccc------c------ccE
Q 006825 493 ELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKS---------LSLDHMV------V------PET 551 (630)
Q Consensus 493 ~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s---------~s~d~~i------~------~~~ 551 (630)
. +...+.||...|+.+++++....|++++.||+++.|.......... .+.+..- . ...
T Consensus 387 v-l~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~ 465 (577)
T KOG0642|consen 387 V-LSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTS 465 (577)
T ss_pred h-hccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhccccccc
Confidence 1 1234689999999999999999999999999999999876333100 1111000 0 001
Q ss_pred EEeC-CCCceEEecc-------CCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcE
Q 006825 552 VFAL-SDKPICSFQG-------HLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLR 620 (630)
Q Consensus 552 Vwdl-sgk~l~tL~G-------Hs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~ 620 (630)
+++. .+..+..|.. -...+.-+.++|. .+.+++..|+.|+++|..++..+.... |...|++++ .+++.+
T Consensus 466 ~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~ 545 (577)
T KOG0642|consen 466 IDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPY 545 (577)
T ss_pred chhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCce
Confidence 1111 1222333321 1134778899999 999999999999999999999998877 999999999 999999
Q ss_pred EEEecce
Q 006825 621 FAYGAFL 627 (630)
Q Consensus 621 lAsgs~~ 627 (630)
+.+++.+
T Consensus 546 l~s~s~d 552 (577)
T KOG0642|consen 546 LMSGSHD 552 (577)
T ss_pred EEeecCC
Confidence 9999765
No 161
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=3.8e-13 Score=146.64 Aligned_cols=208 Identities=17% Similarity=0.107 Sum_probs=152.1
Q ss_pred CCccEecccCCCCceeE---EecCCccCCEEEEEEcCCCCeEEeecCCCC--------------CccccCCcceEEEeec
Q 006825 357 DSFDLNNNGSSGGGMKS---KKKGSWFKSIRTVASSVTGHKERRSSDERD--------------TSSEKGGRRSSSATDD 419 (630)
Q Consensus 357 D~tvr~vWD~~tG~~~~---~lk~gH~~~V~sVAfSpdG~~lasgS~D~d--------------t~s~~gh~~~Vsa~~~ 419 (630)
|.++- .|.-..-..+. .+...|.+.|+.|.|+-.|.||++..-+.. ...++--.+.|.++.|
T Consensus 496 ~~~~~-~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~F 574 (733)
T KOG0650|consen 496 DAAVV-TWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKF 574 (733)
T ss_pred cccce-eechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEe
Confidence 44555 77544211111 223379999999999999999999876541 1114444566777888
Q ss_pred CCCe-EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCc-eeeeeecc
Q 006825 420 SQDV-SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE-RKGELLEK 497 (630)
Q Consensus 420 s~d~-l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~-~~~~l~~~ 497 (630)
.+.. .+-.+.-..||+||+...++ +..|..-...|..|+++|.|..|+.|+.|+.+..+|+.-.. ..++
T Consensus 575 HPs~p~lfVaTq~~vRiYdL~kqel-----vKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~---- 645 (733)
T KOG0650|consen 575 HPSKPYLFVATQRSVRIYDLSKQEL-----VKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKT---- 645 (733)
T ss_pred cCCCceEEEEeccceEEEehhHHHH-----HHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHH----
Confidence 8766 22233356799999865543 44555566789999999999999999999999999997553 3333
Q ss_pred cccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEe-C-C---CCceEEeccCCCC---
Q 006825 498 QEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFA-L-S---DKPICSFQGHLDD--- 569 (630)
Q Consensus 498 ~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwd-l-s---gk~l~tL~GHs~~--- 569 (630)
+.-|...+..|+|++.-.++++++.|+++.+.-- .|++ + . --++..|.||...
T Consensus 646 -lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg------------------~VY~Dl~qnpliVPlK~L~gH~~~~~~ 706 (733)
T KOG0650|consen 646 -LRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHG------------------MVYNDLLQNPLIVPLKRLRGHEKTNDL 706 (733)
T ss_pred -hhhhhhhhhhhhhccccceeeeecCCCcEEEEee------------------eeehhhhcCCceEeeeeccCceeeccc
Confidence 4789999999999999999999999998833211 1111 1 1 1357788999876
Q ss_pred -EEEEEEcCC-CeEEEEECCCcEEEE
Q 006825 570 -VLDLSWSKS-QHLLSSSMDKTVRLW 593 (630)
Q Consensus 570 -V~sLafSPd-~~LaSgS~DgtVrIW 593 (630)
|+.+.|+|. -+|.|++.||+||||
T Consensus 707 gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 707 GVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ceEeecccCCCceEEecCCCceEEee
Confidence 999999999 999999999999999
No 162
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.51 E-value=6.7e-13 Score=141.21 Aligned_cols=254 Identities=11% Similarity=0.044 Sum_probs=171.4
Q ss_pred eEEEEcCCCceEeeecceeeecCccceeEEEeec----ceEeecCCCccEecccCCCCce--eEEecCCccCCEEEEEEc
Q 006825 316 KKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGM--KSKKKGSWFKSIRTVASS 389 (630)
Q Consensus 316 ~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~--~~~lk~gH~~~V~sVAfS 389 (630)
..+|++++.+.- .+.+..+.+|+..|..|.|+| .+.+.|.|+|+| +=|++++.. +..++ .-...+.++.|+
T Consensus 212 VG~Wn~~~~~~d-~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR-~~D~~~~i~e~v~s~~-~d~~~fs~~d~~ 288 (498)
T KOG4328|consen 212 VGLWNFGTQEKD-KDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIR-LQDFEGNISEEVLSLD-TDNIWFSSLDFS 288 (498)
T ss_pred EEEEecCCCCCc-cCceEEeccCCccccceEecCCChhheeeeccCceee-eeeecchhhHHHhhcC-ccceeeeecccc
Confidence 569999744333 345677899999999999999 788999999999 999887643 33332 223344556666
Q ss_pred CCCCeEEeecCCC------------CCccccCCcceEEEeecCCCe---EEEecCCcEEEEEeCCCCcccceeeeeEecc
Q 006825 390 VTGHKERRSSDER------------DTSSEKGGRRSSSATDDSQDV---SFHGQERVRVRQYGKSCKDLTALYKCQEIQA 454 (630)
Q Consensus 390 pdG~~lasgS~D~------------dt~s~~gh~~~Vsa~~~s~d~---l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~g 454 (630)
.+..-+..+..-+ +-...+-|..-|..+++.+.. +++++.|.+++|||+..-...... .-....
T Consensus 289 ~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp-~lst~~ 367 (498)
T KOG4328|consen 289 AESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASP-FLSTLP 367 (498)
T ss_pred CCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCc-ceeccc
Confidence 6544333332221 111256677788888888766 999999999999998644322211 223456
Q ss_pred cCcCEEEEEEccCCCEEEEEeCCCcEEEEECc----CCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeee
Q 006825 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVV----ESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKK 530 (630)
Q Consensus 455 Ht~~V~sVaFSpDG~~LASgS~DgtIrVWDl~----tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~ 530 (630)
|..+|.+..|||.|-.|+|-+.|..|||||.. ......++.-....+---..+...|.|+..+|+.+-.-..|
T Consensus 368 HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~I--- 444 (498)
T KOG4328|consen 368 HRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPI--- 444 (498)
T ss_pred ccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcce---
Confidence 99999999999977779999999999999983 33333332111111111234567899999999998766666
Q ss_pred cccccccccccccCccccccEEEeCCC-CceEEeccCCC-CEEE-EEEcCC-CeEEEE-ECCCcEEEEeCC
Q 006825 531 RRGRSINRKSLSLDHMVVPETVFALSD-KPICSFQGHLD-DVLD-LSWSKS-QHLLSS-SMDKTVRLWHLS 596 (630)
Q Consensus 531 ~~~~~~~~~s~s~d~~i~~~~Vwdlsg-k~l~tL~GHs~-~V~s-LafSPd-~~LaSg-S~DgtVrIWDl~ 596 (630)
-|++.++ +.++.|..... .|.+ ..|+|- ..+++| ..-|.|.||--+
T Consensus 445 --------------------Dv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 445 --------------------DVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred --------------------eEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence 6777754 44777765544 5555 478997 435544 457888888544
No 163
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=5.6e-14 Score=150.22 Aligned_cols=281 Identities=11% Similarity=0.049 Sum_probs=203.3
Q ss_pred ceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCC--CCeEEeecCCCC---
Q 006825 332 FEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVT--GHKERRSSDERD--- 403 (630)
Q Consensus 332 f~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpd--G~~lasgS~D~d--- 403 (630)
...|.+|.+.|..|.|.. .|+|||.|.++. +||+.++..+..+..||...|-...|-|. -..+++.+.|+.
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv-~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVV-VWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEE-eehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence 367889999999999988 799999999999 99999999999999999999998889883 356888887771
Q ss_pred -----------CccccCCcceEEEee---cCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCc---CEEEEEEcc
Q 006825 404 -----------TSSEKGGRRSSSATD---DSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNG---SIWSIKFSL 466 (630)
Q Consensus 404 -----------t~s~~gh~~~Vsa~~---~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~---~V~sVaFSp 466 (630)
+.-+..|...|..++ +++..+++++.|+.|.-.|+.+........ .-+.+.. ..++|+..|
T Consensus 214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~--cr~~~~~~~v~L~~Ia~~P 291 (559)
T KOG1334|consen 214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV--CREADEKERVGLYTIAVDP 291 (559)
T ss_pred eeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee--eeccCCccceeeeeEecCC
Confidence 222444555555444 555559999999999999988765433322 3344554 568999999
Q ss_pred CC-CEEEEEeCCCcEEEEECcCCcee------eeeeccc-ccCcccceEEEEECCCCCEEEEeeCCCeeeeeccccccc-
Q 006825 467 DG-RYLASAGEDCVIHVWQVVESERK------GELLEKQ-EDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSIN- 537 (630)
Q Consensus 467 DG-~~LASgS~DgtIrVWDl~tg~~~------~~l~~~~-~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~- 537 (630)
-. .++|+|+.|..+||||.+.-... ..+.... .......|++++|+.++.-++++-.|..|.+.......-
T Consensus 292 ~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~ 371 (559)
T KOG1334|consen 292 RNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGS 371 (559)
T ss_pred CCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCC
Confidence 44 48999999999999998643221 2211000 112335688999998877777777888776554332111
Q ss_pred -ccccccCccccccEEEeCCCCceE-EeccCCC--CEEEEEEc-CC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCce
Q 006825 538 -RKSLSLDHMVVPETVFALSDKPIC-SFQGHLD--DVLDLSWS-KS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYD 610 (630)
Q Consensus 538 -~~s~s~d~~i~~~~Vwdlsgk~l~-tL~GHs~--~V~sLafS-Pd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V 610 (630)
....++. ...+. .++||.. .|..+-|- |. .|++|||.=|.|.||+-.+++.|+.+. ...-|
T Consensus 372 ~p~~~s~~------------~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VV 439 (559)
T KOG1334|consen 372 EPDPSSPR------------EQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVV 439 (559)
T ss_pred CCCCCcch------------hhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceE
Confidence 0011100 12222 3889975 47888875 55 999999999999999999999998887 33389
Q ss_pred EEEE-cCCCcEEEEecce
Q 006825 611 ISLV-DRLMLRFAYGAFL 627 (630)
Q Consensus 611 ~sVa-s~~~~~lAsgs~~ 627 (630)
+||. +|..-.||+.+-.
T Consensus 440 NCLEpHP~~PvLAsSGid 457 (559)
T KOG1334|consen 440 NCLEPHPHLPVLASSGID 457 (559)
T ss_pred eccCCCCCCchhhccCCc
Confidence 9999 9988888887644
No 164
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.51 E-value=2.1e-13 Score=140.22 Aligned_cols=247 Identities=15% Similarity=0.133 Sum_probs=175.2
Q ss_pred cccccEEEEE--CCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec----ceEeecCCCccE
Q 006825 288 VAEQGCLIKN--LDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ----NVEEGNKDSFDL 361 (630)
Q Consensus 288 ~~~~~~~I~~--LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~----~laSgS~D~tvr 361 (630)
+|...-+-|. +.+|..|++..+ .-|. .++-++.+++.. ..++||...|.+|-|.| +++++|.|.++|
T Consensus 89 ~Esfytcsw~yd~~~~~p~la~~G-~~Gv-IrVid~~~~~~~-----~~~~ghG~sINeik~~p~~~qlvls~SkD~svR 161 (385)
T KOG1034|consen 89 DESFYTCSWSYDSNTGNPFLAAGG-YLGV-IRVIDVVSGQCS-----KNYRGHGGSINEIKFHPDRPQLVLSASKDHSVR 161 (385)
T ss_pred CcceEEEEEEecCCCCCeeEEeec-ceeE-EEEEecchhhhc-----cceeccCccchhhhcCCCCCcEEEEecCCceEE
Confidence 3344334454 456778877554 4454 567788888888 89999999999999998 799999999999
Q ss_pred ecccCCCCceeEEecC--CccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCC
Q 006825 362 NNNGSSGGGMKSKKKG--SWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKS 439 (630)
Q Consensus 362 ~vWD~~tG~~~~~lk~--gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~ 439 (630)
+|++.+..++..+-+ ||...|.+|.|+++|.+++++ +.|..+++|++.
T Consensus 162 -lwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~Sc-----------------------------GmDhslk~W~l~ 211 (385)
T KOG1034|consen 162 -LWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASC-----------------------------GMDHSLKLWRLN 211 (385)
T ss_pred -EEeccCCeEEEEecccccccCcEEEEEEcCCCCeeecc-----------------------------CCcceEEEEecC
Confidence 999999999998874 899999999999999888654 455568888876
Q ss_pred CCcccce----------------------eee-eEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEEC-cCCceeeee-
Q 006825 440 CKDLTAL----------------------YKC-QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQV-VESERKGEL- 494 (630)
Q Consensus 440 ~~el~~~----------------------~~v-~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl-~tg~~~~~l- 494 (630)
.+++... +.. .+-.-|...|-|+.| =|.+++|=|-++.|..|.. +-++.+...
T Consensus 212 ~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw--~gd~ilSkscenaI~~w~pgkl~e~~~~vk 289 (385)
T KOG1034|consen 212 VKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRW--FGDFILSKSCENAIVCWKPGKLEESIHNVK 289 (385)
T ss_pred hhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHH--HhhheeecccCceEEEEecchhhhhhhccC
Confidence 4432110 000 123458888999988 4789999999999999987 222221111
Q ss_pred -------ecccccCcccceEEEEE--CCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCC-CCc--eEE
Q 006825 495 -------LEKQEDGHLNMLLLANG--SPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS-DKP--ICS 562 (630)
Q Consensus 495 -------~~~~~~gh~~~V~svaf--Spdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdls-gk~--l~t 562 (630)
+...+.-....++.+.| .|-++.|+.|...|.+ .+|++. ..+ ..+
T Consensus 290 p~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v-----------------------~vwdL~~~ep~~~tt 346 (385)
T KOG1034|consen 290 PPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKV-----------------------YVWDLDNNEPPKCTT 346 (385)
T ss_pred CCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcE-----------------------EEEECCCCCCccCce
Confidence 01112223344555555 4558899999999999 677762 222 222
Q ss_pred ecc--CCCCEEEEEEcCC-CeEEEEECCCcEEEEeCC
Q 006825 563 FQG--HLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLS 596 (630)
Q Consensus 563 L~G--Hs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~ 596 (630)
+.. -...|...+|+.| .+|+....|++|--||..
T Consensus 347 l~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 347 LTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 322 2246899999999 899999999999999853
No 165
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.51 E-value=4.1e-12 Score=142.94 Aligned_cols=271 Identities=14% Similarity=0.088 Sum_probs=207.0
Q ss_pred eEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCC
Q 006825 316 KKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTG 392 (630)
Q Consensus 316 ~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG 392 (630)
..||.+.||+.+ .++.++-..|+++..+| .+|-|..+++|. +.+++.++.+.+++ .-.+.|.+++|.-||
T Consensus 184 lql~Nvrt~K~v-----~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~Vi-ifNlK~dkil~sFk-~d~g~VtslSFrtDG 256 (910)
T KOG1539|consen 184 LQLWNVRTGKVV-----YTFQEFFSRITAIEQSPALDVVAIGLENGTVI-IFNLKFDKILMSFK-QDWGRVTSLSFRTDG 256 (910)
T ss_pred EEEEEeccCcEE-----EEecccccceeEeccCCcceEEEEeccCceEE-EEEcccCcEEEEEE-ccccceeEEEeccCC
Confidence 579999999999 99999999999999999 789999999999 99999999999998 336899999999998
Q ss_pred CeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEE
Q 006825 393 HKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLA 472 (630)
Q Consensus 393 ~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LA 472 (630)
..+ +++|..-|.+-+||+..+.+ ..++..+|.+.|..+.|-|....|+
T Consensus 257 ~p~----------------------------las~~~~G~m~~wDLe~kkl----~~v~~nah~~sv~~~~fl~~epVl~ 304 (910)
T KOG1539|consen 257 NPL----------------------------LASGRSNGDMAFWDLEKKKL----INVTRNAHYGSVTGATFLPGEPVLV 304 (910)
T ss_pred Cee----------------------------EEeccCCceEEEEEcCCCee----eeeeeccccCCcccceecCCCceEe
Confidence 754 46777788999999987764 2344568999999999999999999
Q ss_pred EEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEEC-CCCCEEEEeeCCCeeeeeccccccc--------------
Q 006825 473 SAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGS-PEPTSLSPKHLDNHLEKKRRGRSIN-------------- 537 (630)
Q Consensus 473 SgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafS-pdg~~lasgs~Dg~I~i~~~~~~~~-------------- 537 (630)
|++.|..+++|=..++.-...++ ....||..+..++.|. .+|..+.+++.|++++.........
T Consensus 305 ta~~DnSlk~~vfD~~dg~pR~L-R~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~k 383 (910)
T KOG1539|consen 305 TAGADNSLKVWVFDSGDGVPRLL-RSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAK 383 (910)
T ss_pred eccCCCceeEEEeeCCCCcchhe-eeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccc
Confidence 99999999999776554332222 2248999999999998 5699999999999765433211000
Q ss_pred --------------ccccc--------cCccc------cccEEEeCCCCce--EEec-----cCCCCEEEEEEcCC-CeE
Q 006825 538 --------------RKSLS--------LDHMV------VPETVFALSDKPI--CSFQ-----GHLDDVLDLSWSKS-QHL 581 (630)
Q Consensus 538 --------------~~s~s--------~d~~i------~~~~Vwdlsgk~l--~tL~-----GHs~~V~sLafSPd-~~L 581 (630)
+..+. .++.+ ...+.|+...+.+ ++|. .-...+++++.++. ++.
T Consensus 384 k~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~ 463 (910)
T KOG1539|consen 384 KVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFV 463 (910)
T ss_pred cccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceE
Confidence 00000 01111 1125677644333 2222 12256899999998 888
Q ss_pred EEEECCCcEEEEeCCCCcEEEEE---e-cCCceEEEE-cCCCcEEEEecc
Q 006825 582 LSSSMDKTVRLWHLSSKTCLKIF---S-HSDYDISLV-DRLMLRFAYGAF 626 (630)
Q Consensus 582 aSgS~DgtVrIWDl~tg~~l~t~---~-H~~~V~sVa-s~~~~~lAsgs~ 626 (630)
+-|..-|+|-++++.+|.....| + |...|+.|+ +.....+.+++.
T Consensus 464 ~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~ 513 (910)
T KOG1539|consen 464 FIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGA 513 (910)
T ss_pred EEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccC
Confidence 99999999999999999999999 2 999999999 555555555543
No 166
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.51 E-value=8.7e-14 Score=145.64 Aligned_cols=134 Identities=22% Similarity=0.346 Sum_probs=117.4
Q ss_pred EecccCcCEEEEEEcc-CCCEEEEEeCCCcEEEEECcCCceeeeee--cccccCcccceEEEEECCC-CCEEEEeeCCCe
Q 006825 451 EIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVESERKGELL--EKQEDGHLNMLLLANGSPE-PTSLSPKHLDNH 526 (630)
Q Consensus 451 tL~gHt~~V~sVaFSp-DG~~LASgS~DgtIrVWDl~tg~~~~~l~--~~~~~gh~~~V~svafSpd-g~~lasgs~Dg~ 526 (630)
.+.||+++|..++|+| +...|||||+|.+|+||++..+.....+. ...+.||...|-.++|+|. ...|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 4689999999999999 77899999999999999998766554443 2335899999999999997 678888999999
Q ss_pred eeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEE
Q 006825 527 LEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIF 604 (630)
Q Consensus 527 I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~ 604 (630)
| .+|++ +|+.+.++. |.+.|+++.|+.+ ++|+|.+.|+.|||||.++++.+..-
T Consensus 156 v-----------------------~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~ 211 (472)
T KOG0303|consen 156 V-----------------------SIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG 211 (472)
T ss_pred E-----------------------EEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeec
Confidence 9 88888 888888888 9999999999999 99999999999999999999998877
Q ss_pred e-cCC
Q 006825 605 S-HSD 608 (630)
Q Consensus 605 ~-H~~ 608 (630)
. |.+
T Consensus 212 ~~heG 216 (472)
T KOG0303|consen 212 VAHEG 216 (472)
T ss_pred ccccC
Confidence 5 654
No 167
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.50 E-value=1.4e-13 Score=138.05 Aligned_cols=241 Identities=16% Similarity=0.118 Sum_probs=172.3
Q ss_pred ecceeeecCccceeEEEeec--ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeE--------Ee--
Q 006825 330 EEFEMCVGHSPIVQELMRRQ--NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKE--------RR-- 397 (630)
Q Consensus 330 eef~~l~GHs~~V~~Lafs~--~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~l--------as-- 397 (630)
..|-.|.+|...|+++.|.. +|.+|..-+.++ +|+..+...+..++.-|...|..+.-.|++.+. ..
T Consensus 5 dP~fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~-~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ 83 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQANERLMSGLSVGIVK-MWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWT 83 (323)
T ss_pred CCeeEeccccchheehhhccchhhhcccccceEE-EEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEEE
Confidence 45677889999999999976 899999999999 999988877777765566666665555533221 10
Q ss_pred ----------------------------------------ecCCC---C----------CccccCCcceEEEeecC----
Q 006825 398 ----------------------------------------SSDER---D----------TSSEKGGRRSSSATDDS---- 420 (630)
Q Consensus 398 ----------------------------------------gS~D~---d----------t~s~~gh~~~Vsa~~~s---- 420 (630)
++++- | .....+....+.+....
T Consensus 84 ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~ 163 (323)
T KOG0322|consen 84 IAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACG 163 (323)
T ss_pred ccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecccccc
Confidence 00000 0 00022233344444411
Q ss_pred CCe-EEEecCCcEEEEEeCCCCcccc-----eeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeee
Q 006825 421 QDV-SFHGQERVRVRQYGKSCKDLTA-----LYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGEL 494 (630)
Q Consensus 421 ~d~-l~Sgs~Dg~VriWd~~~~el~~-----~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l 494 (630)
... ++.|.++|.|.+||..+++..- ...+.....|..+|.++.|.+.-..=++|+.+..+-.|.+.......++
T Consensus 164 s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~ 243 (323)
T KOG0322|consen 164 STFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQI 243 (323)
T ss_pred ceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccc
Confidence 112 7889999999999998753110 1123445679999999999885555588999999999998754221111
Q ss_pred ecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEE
Q 006825 495 LEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDL 573 (630)
Q Consensus 495 ~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sL 573 (630)
... ..-....|..+.+-||++++|+++.|+.| +||.. +..++..|+-|...|++|
T Consensus 244 ~~e-~~lknpGv~gvrIRpD~KIlATAGWD~Ri-----------------------RVyswrtl~pLAVLkyHsagvn~v 299 (323)
T KOG0322|consen 244 RKE-ITLKNPGVSGVRIRPDGKILATAGWDHRI-----------------------RVYSWRTLNPLAVLKYHSAGVNAV 299 (323)
T ss_pred cce-EEecCCCccceEEccCCcEEeecccCCcE-----------------------EEEEeccCCchhhhhhhhcceeEE
Confidence 100 11223457788999999999999999999 77777 789999999999999999
Q ss_pred EEcCC-CeEEEEECCCcEEEEeC
Q 006825 574 SWSKS-QHLLSSSMDKTVRLWHL 595 (630)
Q Consensus 574 afSPd-~~LaSgS~DgtVrIWDl 595 (630)
+|+|+ .++|.+|+|.+|-+|++
T Consensus 300 Afspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 300 AFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EeCCCCchhhhccCCceEEeeec
Confidence 99999 99999999999999986
No 168
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.50 E-value=5.4e-13 Score=142.77 Aligned_cols=170 Identities=15% Similarity=0.189 Sum_probs=140.4
Q ss_pred EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcc
Q 006825 424 SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHL 503 (630)
Q Consensus 424 l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~ 503 (630)
+++|+..+.|+|||++.+ .+.+.|++|+..|++|.++-...|||+++.-|-|.|-.+.++....+|. .+..
T Consensus 94 ~~sgG~~~~Vkiwdl~~k-----l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~----~~sg 164 (673)
T KOG4378|consen 94 EISGGQSGCVKIWDLRAK-----LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFT----IDSG 164 (673)
T ss_pred eeccCcCceeeehhhHHH-----HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcccccee----cCCC
Confidence 688899999999999744 2567799999999999999999999999999999999999988777752 3334
Q ss_pred cceEEEEECCCCCE-EEEeeCCCeeeeecccccccccccccCccccccEEEeCCCC-ce-EEeccCCCCEEEEEEcCC--
Q 006825 504 NMLLLANGSPEPTS-LSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDK-PI-CSFQGHLDDVLDLSWSKS-- 578 (630)
Q Consensus 504 ~~V~svafSpdg~~-lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk-~l-~tL~GHs~~V~sLafSPd-- 578 (630)
..|.-+.|+|..+. |.+++.+|.| .+||++|+ ++ .-.+.|..+...|+|+|.
T Consensus 165 qsvRll~ys~skr~lL~~asd~G~V-----------------------tlwDv~g~sp~~~~~~~HsAP~~gicfspsne 221 (673)
T KOG4378|consen 165 QSVRLLRYSPSKRFLLSIASDKGAV-----------------------TLWDVQGMSPIFHASEAHSAPCRGICFSPSNE 221 (673)
T ss_pred CeEEEeecccccceeeEeeccCCeE-----------------------EEEeccCCCcccchhhhccCCcCcceecCCcc
Confidence 56778999998654 5568888999 89999663 33 345789999999999997
Q ss_pred CeEEEEECCCcEEEEeCCCCcEEEEEecCCceEEEE-cCCCcEEEEec
Q 006825 579 QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYDISLV-DRLMLRFAYGA 625 (630)
Q Consensus 579 ~~LaSgS~DgtVrIWDl~tg~~l~t~~H~~~V~sVa-s~~~~~lAsgs 625 (630)
.+|++.+.|+.|.|||....+....+....+...|+ .+.+.+|+.|.
T Consensus 222 ~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~ 269 (673)
T KOG4378|consen 222 ALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGN 269 (673)
T ss_pred ceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEeec
Confidence 889999999999999999888777777666677788 77777777764
No 169
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.49 E-value=7.4e-13 Score=134.21 Aligned_cols=238 Identities=15% Similarity=0.153 Sum_probs=165.1
Q ss_pred EEEcCCCceEeeecceeee-cCccceeEEEeec---ceEeecCCCccEecccCCCCce-eEEec----CCccCCEEEEEE
Q 006825 318 VKEVGTGRQLTIEEFEMCV-GHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGM-KSKKK----GSWFKSIRTVAS 388 (630)
Q Consensus 318 l~dv~TG~~lt~eef~~l~-GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~-~~~lk----~gH~~~V~sVAf 388 (630)
-.+.++-..+|+|.+..|- .|-+.|.+|.|.| .+++- .|..|. +|+...+.. ...+. .+|.....+-+|
T Consensus 101 pe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm-~dn~i~-l~~l~ess~~vaev~ss~s~e~~~~ftsg~W 178 (370)
T KOG1007|consen 101 PEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASM-DDNNIV-LWSLDESSKIVAEVLSSESAEMRHSFTSGAW 178 (370)
T ss_pred ccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEe-ccCceE-EEEcccCcchheeecccccccccceeccccc
Confidence 3334455566777777765 5667899999999 45543 378888 999987765 33332 245555566666
Q ss_pred cC--CCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc
Q 006825 389 SV--TGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL 466 (630)
Q Consensus 389 Sp--dG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp 466 (630)
+| +|. .+....|++++.||.++... ....-.+|...|..|.|+|
T Consensus 179 spHHdgn------------------------------qv~tt~d~tl~~~D~RT~~~----~~sI~dAHgq~vrdlDfNp 224 (370)
T KOG1007|consen 179 SPHHDGN------------------------------QVATTSDSTLQFWDLRTMKK----NNSIEDAHGQRVRDLDFNP 224 (370)
T ss_pred CCCCccc------------------------------eEEEeCCCcEEEEEccchhh----hcchhhhhcceeeeccCCC
Confidence 66 332 34455688999999986632 1122368999999999999
Q ss_pred CCC-EEEEEeCCCcEEEEECcCCc-eeeeeecccccCcccceEEEEECCC-CCEEEEeeCCCeeeeeccccccc--cccc
Q 006825 467 DGR-YLASAGEDCVIHVWQVVESE-RKGELLEKQEDGHLNMLLLANGSPE-PTSLSPKHLDNHLEKKRRGRSIN--RKSL 541 (630)
Q Consensus 467 DG~-~LASgS~DgtIrVWDl~tg~-~~~~l~~~~~~gh~~~V~svafSpd-g~~lasgs~Dg~I~i~~~~~~~~--~~s~ 541 (630)
+-+ +||||+.||.|||||.+..+ .+.+ +.+|...|++|.|+|. .++|++++.|..|.++....... ...+
T Consensus 225 nkq~~lvt~gDdgyvriWD~R~tk~pv~e-----l~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~ 299 (370)
T KOG1007|consen 225 NKQHILVTCGDDGYVRIWDTRKTKFPVQE-----LPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEF 299 (370)
T ss_pred CceEEEEEcCCCccEEEEeccCCCccccc-----cCCCceEEEEEEecCccceEEEecCCCceeEEEecccccccccccc
Confidence 766 79999999999999997654 3444 4899999999999998 67889999999987776543111 0111
Q ss_pred ccCccc-----cccEEEeCCCCceEEeccCCCCEEEEEEcCC--CeEEEEECCCcEEEEeCC
Q 006825 542 SLDHMV-----VPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLS 596 (630)
Q Consensus 542 s~d~~i-----~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd--~~LaSgS~DgtVrIWDl~ 596 (630)
..+..- .-+++--+....+.++..|.+.|++++|+.- =+|||-|.||.|-|=.+.
T Consensus 300 ~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 300 EDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 100000 0112222344567789999999999999864 678999999999886664
No 170
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=7e-12 Score=138.37 Aligned_cols=224 Identities=13% Similarity=0.013 Sum_probs=151.9
Q ss_pred eEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCC---CccEecccCCCCcee--EEecCCccCCEEEEE
Q 006825 316 KKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKD---SFDLNNNGSSGGGMK--SKKKGSWFKSIRTVA 387 (630)
Q Consensus 316 ~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D---~tvr~vWD~~tG~~~--~~lk~gH~~~V~sVA 387 (630)
..+||...+. . ..+.+|...|..+.|+| .|+..+.+ ..+. +||+.+|+.. ..++ +|. ..++
T Consensus 186 i~i~d~dg~~-~-----~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~-i~dl~tg~~~~l~~~~-g~~---~~~~ 254 (429)
T PRK01742 186 VRVADYDGFN-Q-----FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLV-VHDLRSGARKVVASFR-GHN---GAPA 254 (429)
T ss_pred EEEECCCCCC-c-----eEeccCCCccccceEcCCCCEEEEEEecCCCcEEE-EEeCCCCceEEEecCC-Ccc---Ccee
Confidence 4566654333 3 45677888899999999 57776654 4688 9999988643 3333 443 3689
Q ss_pred EcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCc--EEEEEeCCCCcccceeeeeEecccCcCEEEEEEc
Q 006825 388 SSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERV--RVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFS 465 (630)
Q Consensus 388 fSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg--~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFS 465 (630)
|+|||++|+.++ ..++ .|++|+..+++ ...+..|...+....|+
T Consensus 255 wSPDG~~La~~~----------------------------~~~g~~~Iy~~d~~~~~------~~~lt~~~~~~~~~~wS 300 (429)
T PRK01742 255 FSPDGSRLAFAS----------------------------SKDGVLNIYVMGANGGT------PSQLTSGAGNNTEPSWS 300 (429)
T ss_pred ECCCCCEEEEEE----------------------------ecCCcEEEEEEECCCCC------eEeeccCCCCcCCEEEC
Confidence 999999887432 1222 36666776553 34567788889999999
Q ss_pred cCCCEEEEEe-CCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccC
Q 006825 466 LDGRYLASAG-EDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLD 544 (630)
Q Consensus 466 pDG~~LASgS-~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d 544 (630)
|||++|+..+ .++..+||++........++ .+.. ..+.|+|+|+.|+..+.++.+
T Consensus 301 pDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-----~~~~--~~~~~SpDG~~ia~~~~~~i~----------------- 356 (429)
T PRK01742 301 PDGQSILFTSDRSGSPQVYRMSASGGGASLV-----GGRG--YSAQISADGKTLVMINGDNVV----------------- 356 (429)
T ss_pred CCCCEEEEEECCCCCceEEEEECCCCCeEEe-----cCCC--CCccCCCCCCEEEEEcCCCEE-----------------
Confidence 9999777555 67889999875432222221 2222 357899999999887665543
Q ss_pred ccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeC--CCCcEEEEEe-cCCceEEEE-cCC
Q 006825 545 HMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHL--SSKTCLKIFS-HSDYDISLV-DRL 617 (630)
Q Consensus 545 ~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl--~tg~~l~t~~-H~~~V~sVa-s~~ 617 (630)
+|++ +++.. .+..+ .....++|+|+ .+|+.++.++.+++|++ .+|++++.+. |.+.+...+ +|.
T Consensus 357 -------~~Dl~~g~~~-~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 357 -------KQDLTSGSTE-VLSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred -------EEECCCCCeE-EecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 4565 34332 23222 12356889999 89999999999999986 3688888887 777777776 543
No 171
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.46 E-value=2.1e-12 Score=131.09 Aligned_cols=235 Identities=13% Similarity=0.181 Sum_probs=165.7
Q ss_pred CCCCceeEEecCCccCCEEEEEEcCCCC-----eEEeecCCC------------------CCccccCCcceEEEeecCC-
Q 006825 366 SSGGGMKSKKKGSWFKSIRTVASSVTGH-----KERRSSDER------------------DTSSEKGGRRSSSATDDSQ- 421 (630)
Q Consensus 366 ~~tG~~~~~lk~gH~~~V~sVAfSpdG~-----~lasgS~D~------------------dt~s~~gh~~~Vsa~~~s~- 421 (630)
-.+++.+.+-...|--+++.+-|.|+.+ +||+.++-- .+.+...+...+++.+...
T Consensus 82 ~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~ 161 (364)
T KOG0290|consen 82 EDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEV 161 (364)
T ss_pred cCCCceeccCCCCCCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccC
Confidence 3455555554457888999999999864 466655421 1122344555666666654
Q ss_pred --CeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCC-EEEEEeCCCcEEEEECcCCceeeeeeccc
Q 006825 422 --DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGR-YLASAGEDCVIHVWQVVESERKGELLEKQ 498 (630)
Q Consensus 422 --d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~-~LASgS~DgtIrVWDl~tg~~~~~l~~~~ 498 (630)
..+.+.+-|-+..|||+.++. ..+....|-+|...|+.|+|..++. .+||.|.||.||++|++.-+.-..+..
T Consensus 162 dp~~igtSSiDTTCTiWdie~~~--~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE-- 237 (364)
T KOG0290|consen 162 DPNLIGTSSIDTTCTIWDIETGV--SGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYE-- 237 (364)
T ss_pred CcceeEeecccCeEEEEEEeecc--ccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEec--
Confidence 338899999999999998762 1223466889999999999999664 899999999999999987654333321
Q ss_pred ccCcccceEEEEECCC-CCEEEEeeCCC-eeeeecccccccccccccCccccccEEEeC--CCCceEEeccCCCCEEEEE
Q 006825 499 EDGHLNMLLLANGSPE-PTSLSPKHLDN-HLEKKRRGRSINRKSLSLDHMVVPETVFAL--SDKPICSFQGHLDDVLDLS 574 (630)
Q Consensus 499 ~~gh~~~V~svafSpd-g~~lasgs~Dg-~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl--sgk~l~tL~GHs~~V~sLa 574 (630)
......+...++|++. ..++|+-..|. .| .|.++ ...++..|.+|...|+.++
T Consensus 238 ~p~~~~pLlRLswnkqDpnymATf~~dS~~V-----------------------~iLDiR~P~tpva~L~~H~a~VNgIa 294 (364)
T KOG0290|consen 238 DPSPSTPLLRLSWNKQDPNYMATFAMDSNKV-----------------------VILDIRVPCTPVARLRNHQASVNGIA 294 (364)
T ss_pred CCCCCCcceeeccCcCCchHHhhhhcCCceE-----------------------EEEEecCCCcceehhhcCcccccceE
Confidence 1222466777888775 56666644443 33 45555 5789999999999999999
Q ss_pred EcCC--CeEEEEECCCcEEEEeCCCCc------EEEEEecCCceEEEE----cCCCcEEEEecce
Q 006825 575 WSKS--QHLLSSSMDKTVRLWHLSSKT------CLKIFSHSDYDISLV----DRLMLRFAYGAFL 627 (630)
Q Consensus 575 fSPd--~~LaSgS~DgtVrIWDl~tg~------~l~t~~H~~~V~sVa----s~~~~~lAsgs~~ 627 (630)
|.|. ..|+|++.|..+.|||+.+.- ++..+.-.+.|+.|+ .++...++++...
T Consensus 295 WaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~kkl 359 (364)
T KOG0290|consen 295 WAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFGKKL 359 (364)
T ss_pred ecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEecCee
Confidence 9997 899999999999999997532 334445677788888 4455555555544
No 172
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=1e-12 Score=138.84 Aligned_cols=173 Identities=18% Similarity=0.151 Sum_probs=124.8
Q ss_pred EEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCccc
Q 006825 425 FHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLN 504 (630)
Q Consensus 425 ~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~ 504 (630)
++|+.||++|+|++.... .+..+.+|.+.|.+|.|+|||++|+|-+.| ..+||++.++..+..+. ......
T Consensus 160 atgg~dg~lRv~~~Ps~~-----t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t---~~~k~~ 230 (398)
T KOG0771|consen 160 ATGGTDGTLRVWEWPSML-----TILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT---PFSKDE 230 (398)
T ss_pred eeccccceEEEEecCcch-----hhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC---Ccccch
Confidence 567788999999975543 345678899999999999999999999999 99999999997666541 133334
Q ss_pred ceEEEEECCCC---CEEEE--eeCCCeeeeecccccccccccccCccccccEEEeCC-CCceEEeccCCCCEEEEEEcCC
Q 006825 505 MLLLANGSPEP---TSLSP--KHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS-DKPICSFQGHLDDVLDLSWSKS 578 (630)
Q Consensus 505 ~V~svafSpdg---~~las--gs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdls-gk~l~tL~GHs~~V~sLafSPd 578 (630)
.+..+.|+.|. .+.+. ....+.|..++. .+|.-. --+.++...-...|.+++.+++
T Consensus 231 ~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~------------------~~w~~~~~l~~~~~~~~~~siSsl~VS~d 292 (398)
T KOG0771|consen 231 MFSSCRFSVDNAQETLRLAASQFPGGGVRLCDI------------------SLWSGSNFLRLRKKIKRFKSISSLAVSDD 292 (398)
T ss_pred hhhhceecccCCCceEEEEEecCCCCceeEEEe------------------eeeccccccchhhhhhccCcceeEEEcCC
Confidence 55677787776 32222 223333432221 344432 0111222223347999999999
Q ss_pred -CeEEEEECCCcEEEEeCCCCcEEEEEe--cCCceEEEE-cCCCcEEEEe
Q 006825 579 -QHLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYDISLV-DRLMLRFAYG 624 (630)
Q Consensus 579 -~~LaSgS~DgtVrIWDl~tg~~l~t~~--H~~~V~sVa-s~~~~~lAsg 624 (630)
++++-|++||.|-|+++.+-++++.++ |...|+.|. .|+..++++-
T Consensus 293 Gkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~sv 342 (398)
T KOG0771|consen 293 GKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASV 342 (398)
T ss_pred CcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCccccc
Confidence 999999999999999999999999998 999999999 7666655543
No 173
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.45 E-value=3.2e-13 Score=141.90 Aligned_cols=165 Identities=25% Similarity=0.334 Sum_probs=129.1
Q ss_pred CcCEEEEEEccCCC-EEEEEeCCCcEEEEECcCCceee----eeecccccCcccceEEEEECCCCCEEEEeeCCCeeeee
Q 006825 456 NGSIWSIKFSLDGR-YLASAGEDCVIHVWQVVESERKG----ELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKK 530 (630)
Q Consensus 456 t~~V~sVaFSpDG~-~LASgS~DgtIrVWDl~tg~~~~----~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~ 530 (630)
..+|+.+.|.++.. +||||+.|..||||-++.++... ......+.+|...|+.+.|+|+|.++++|++++.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 35899999999776 99999999999999987654433 12234568999999999999999999999999999999
Q ss_pred cccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCC
Q 006825 531 RRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSD 608 (630)
Q Consensus 531 ~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~ 608 (630)
+....... ..+. ........-...+.+.+|...|+.++|+|+ .++++++.|.++++||+..|+.+..+. |..
T Consensus 93 k~~~~~~~---~~d~---e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~ 166 (434)
T KOG1009|consen 93 KQGDVRIF---DADT---EADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEH 166 (434)
T ss_pred EecCcCCc---cccc---hhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccc
Confidence 87751110 0111 001111112345667889999999999999 999999999999999999999999998 999
Q ss_pred ceEEEE-cCCCcEEEEecc
Q 006825 609 YDISLV-DRLMLRFAYGAF 626 (630)
Q Consensus 609 ~V~sVa-s~~~~~lAsgs~ 626 (630)
+|.-++ +|...++++-+.
T Consensus 167 yvqgvawDpl~qyv~s~s~ 185 (434)
T KOG1009|consen 167 YVQGVAWDPLNQYVASKSS 185 (434)
T ss_pred ccceeecchhhhhhhhhcc
Confidence 999999 776666665443
No 174
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=2.5e-12 Score=132.96 Aligned_cols=262 Identities=15% Similarity=0.134 Sum_probs=172.8
Q ss_pred CCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec-----ceEeecCCCccEecccCCCCcee
Q 006825 298 LDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ-----NVEEGNKDSFDLNNNGSSGGGMK 372 (630)
Q Consensus 298 LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~-----~laSgS~D~tvr~vWD~~tG~~~ 372 (630)
+.+|++-.|...-..|. .++.+..||+.| +.+.||.+.+..+.|.. .+.+++.|++|| +||..+....
T Consensus 35 ~~~~~e~~vav~lSngs-v~lyd~~tg~~l-----~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr-~wD~Rs~~e~ 107 (376)
T KOG1188|consen 35 VKDGFETAVAVSLSNGS-VRLYDKGTGQLL-----EEFKGPPATTNGVRFISCDSPHGVISCSSDGTVR-LWDIRSQAES 107 (376)
T ss_pred hccCcceeEEEEecCCe-EEEEeccchhhh-----heecCCCCcccceEEecCCCCCeeEEeccCCeEE-EEEeecchhh
Confidence 45665544433322343 569999999999 88888888888888865 688999999999 9999886654
Q ss_pred EEec-CCcc-CCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeee
Q 006825 373 SKKK-GSWF-KSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQ 450 (630)
Q Consensus 373 ~~lk-~gH~-~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~ 450 (630)
.++. .+|. .+..+++.--.++.++.|..- ...+..|.+||++..+.. +.+
T Consensus 108 a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~-------------------------~~s~A~v~lwDvR~~qq~---l~~ 159 (376)
T KOG1188|consen 108 ARISWTQQSGTPFICLDLNCKKNIIACGTEL-------------------------TRSDASVVLWDVRSEQQL---LRQ 159 (376)
T ss_pred hheeccCCCCCcceEeeccCcCCeEEecccc-------------------------ccCceEEEEEEeccccch---hhh
Confidence 4433 2454 345555554444555443211 123556899999765420 123
Q ss_pred EecccCcCEEEEEEcc-CCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCC-CEEEEeeCCCeee
Q 006825 451 EIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEP-TSLSPKHLDNHLE 528 (630)
Q Consensus 451 tL~gHt~~V~sVaFSp-DG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg-~~lasgs~Dg~I~ 528 (630)
-...|.+-|++|+|+| +.++|+|||-||-|.|+|+......-.|+ ....|...|..+.|..++ +.|.+-+..++..
T Consensus 160 ~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~--~viN~~sSI~~igw~~~~ykrI~clTH~Etf~ 237 (376)
T KOG1188|consen 160 LNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALL--HVINHGSSIHLIGWLSKKYKRIMCLTHMETFA 237 (376)
T ss_pred hhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHH--HhhcccceeeeeeeecCCcceEEEEEccCcee
Confidence 3578999999999999 77899999999999999997653322221 124566778999998876 3466667778777
Q ss_pred eeccccccccccc--------------ccCcccc---c--cEEEeC--------------------CCCceEEecc-CCC
Q 006825 529 KKRRGRSINRKSL--------------SLDHMVV---P--ETVFAL--------------------SDKPICSFQG-HLD 568 (630)
Q Consensus 529 i~~~~~~~~~~s~--------------s~d~~i~---~--~~Vwdl--------------------sgk~l~tL~G-Hs~ 568 (630)
+|..........+ ..+..+- + ..+|.+ ..+.+..|+| |..
T Consensus 238 ~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~e 317 (376)
T KOG1188|consen 238 IYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEE 317 (376)
T ss_pred EEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHH
Confidence 8876553221111 1111110 0 012222 1234555676 667
Q ss_pred CEEEEEEcCC-CeEEEEECCCcEEEEeCC
Q 006825 569 DVLDLSWSKS-QHLLSSSMDKTVRLWHLS 596 (630)
Q Consensus 569 ~V~sLafSPd-~~LaSgS~DgtVrIWDl~ 596 (630)
-|.++.|.-. .+|.||+.||.+.+|...
T Consensus 318 iVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 318 IVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred HHHHHhhhcccceeeccCCCceEEEEecC
Confidence 7888888755 899999999999999854
No 175
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=2.6e-12 Score=135.75 Aligned_cols=243 Identities=13% Similarity=0.072 Sum_probs=166.0
Q ss_pred cccccccEEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEe
Q 006825 286 AGVAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLN 362 (630)
Q Consensus 286 ~~~~~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~ 362 (630)
..-+.+..+++.+..+.+-. .|.-+...+.++....+.++.+.--... ..++|.+ .|++|..|+++|
T Consensus 100 ~~h~~~~~~~~k~~~~~~~~--------~~e~~~~~d~~~~~~a~v~~~l~~~g~~-k~vaf~~~gs~latgg~dg~lR- 169 (398)
T KOG0771|consen 100 SVHPNGNGRARKLPSGCECF--------HFEFVASSDFNAETAANVYQKLVDFGQQ-KVVAFNGDGSKLATGGTDGTLR- 169 (398)
T ss_pred hccccCCeeeeecCCccccc--------ccccccccccchhhhhhHhHHHhhcCcc-eEEEEcCCCCEeeeccccceEE-
Confidence 33456667777776665411 1112223333444333444444432222 6788877 799999999999
Q ss_pred cccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCc
Q 006825 363 NNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKD 442 (630)
Q Consensus 363 vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~e 442 (630)
+|++.+-..+.... .|.+.|+.+.|||||+.|++-+ .| ..++|++.++-
T Consensus 170 v~~~Ps~~t~l~e~-~~~~eV~DL~FS~dgk~lasig-----------------------------~d-~~~VW~~~~g~ 218 (398)
T KOG0771|consen 170 VWEWPSMLTILEEI-AHHAEVKDLDFSPDGKFLASIG-----------------------------AD-SARVWSVNTGA 218 (398)
T ss_pred EEecCcchhhhhhH-hhcCccccceeCCCCcEEEEec-----------------------------CC-ceEEEEeccCc
Confidence 99987777777777 8999999999999999987543 33 58999998762
Q ss_pred ccceeeeeEec--ccCcCEEEEEEccCC-----CEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCC
Q 006825 443 LTALYKCQEIQ--AHNGSIWSIKFSLDG-----RYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEP 515 (630)
Q Consensus 443 l~~~~~v~tL~--gHt~~V~sVaFSpDG-----~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg 515 (630)
+++.+. .-......+.|+.|+ ++++.-..-+.|++|++.....-..+.......-...|.+++.+++|
T Consensus 219 -----~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dG 293 (398)
T KOG0771|consen 219 -----ALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDG 293 (398)
T ss_pred -----hhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCC
Confidence 233332 233456788898888 45555566677888887544332111111122334578999999999
Q ss_pred CEEEEeeCCCeeeeecccccccccccccCccccccEEEeCC-CCceE-EeccCCCCEEEEEEcCC-CeEEEEECCCcEEE
Q 006825 516 TSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS-DKPIC-SFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRL 592 (630)
Q Consensus 516 ~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdls-gk~l~-tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrI 592 (630)
++++.|+.||.| .|++.. -+.++ .-+.|...|+.|.|+|+ +++++-|.|.++.|
T Consensus 294 kf~AlGT~dGsV-----------------------ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v 350 (398)
T KOG0771|consen 294 KFLALGTMDGSV-----------------------AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAV 350 (398)
T ss_pred cEEEEeccCCcE-----------------------EEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeE
Confidence 999999999998 555552 23332 23579999999999999 99999999999999
Q ss_pred EeCCC
Q 006825 593 WHLSS 597 (630)
Q Consensus 593 WDl~t 597 (630)
..+.-
T Consensus 351 ~~l~v 355 (398)
T KOG0771|consen 351 TKLAV 355 (398)
T ss_pred EEEee
Confidence 87754
No 176
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.41 E-value=4.8e-12 Score=139.05 Aligned_cols=228 Identities=15% Similarity=0.117 Sum_probs=150.6
Q ss_pred ceEeecCCCccEecccCCCCcee------EEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCe
Q 006825 350 NVEEGNKDSFDLNNNGSSGGGMK------SKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDV 423 (630)
Q Consensus 350 ~laSgS~D~tvr~vWD~~tG~~~------~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~ 423 (630)
.|+-+-.|+.|+ +.|...-.-. .... .|...|-.+++.| |+. .
T Consensus 66 iLavadE~G~i~-l~dt~~~~fr~ee~~lk~~~-aH~nAifDl~wap-ge~----------------------------~ 114 (720)
T KOG0321|consen 66 ILAVADEDGGII-LFDTKSIVFRLEERQLKKPL-AHKNAIFDLKWAP-GES----------------------------L 114 (720)
T ss_pred eEEEecCCCcee-eecchhhhcchhhhhhcccc-cccceeEeeccCC-Cce----------------------------e
Confidence 688899999999 9998653322 2333 7999999999988 542 2
Q ss_pred EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc-CCCEEEEEeCCCcEEEEECcCCce--e---------
Q 006825 424 SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVESER--K--------- 491 (630)
Q Consensus 424 l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp-DG~~LASgS~DgtIrVWDl~tg~~--~--------- 491 (630)
|++++.|-++|+||++..++.+. ..+.||++.|.+++|.| +...|+||+.||.|.|||++-... .
T Consensus 115 lVsasGDsT~r~Wdvk~s~l~G~---~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~ 191 (720)
T KOG0321|consen 115 LVSASGDSTIRPWDVKTSRLVGG---RLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYG 191 (720)
T ss_pred EEEccCCceeeeeeeccceeecc---eeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhc
Confidence 57778888999999988876543 34889999999999999 556899999999999999863320 0
Q ss_pred ---------eeee--cccccCcccceEE---EEECCCCCEEEEeeC-CCeeeeecccccccccccccCccccccEEEeCC
Q 006825 492 ---------GELL--EKQEDGHLNMLLL---ANGSPEPTSLSPKHL-DNHLEKKRRGRSINRKSLSLDHMVVPETVFALS 556 (630)
Q Consensus 492 ---------~~l~--~~~~~gh~~~V~s---vafSpdg~~lasgs~-Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdls 556 (630)
..+. ......+...|.. +.+..|...||+++. |+.|++|++.+..... .
T Consensus 192 ~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~----------------r 255 (720)
T KOG0321|consen 192 RHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAY----------------R 255 (720)
T ss_pred cccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccccc----------------c
Confidence 0000 0001223334444 556667778888776 9999655554322110 1
Q ss_pred CCceEE--eccC---CCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCC--cEEEEEe----cCCceEEEEcCCCcEEEEe
Q 006825 557 DKPICS--FQGH---LDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK--TCLKIFS----HSDYDISLVDRLMLRFAYG 624 (630)
Q Consensus 557 gk~l~t--L~GH---s~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg--~~l~t~~----H~~~V~sVas~~~~~lAsg 624 (630)
++++.. +.-| .-.+.+|..... .+|...+.|++|++|+|.+- ..+..|. -.-+|.++..+++.++++|
T Consensus 256 ~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~Sg 335 (720)
T KOG0321|consen 256 QEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSG 335 (720)
T ss_pred cCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEecc
Confidence 122222 2233 224556665554 67777777999999999863 3445554 2344555558889999988
Q ss_pred cce
Q 006825 625 AFL 627 (630)
Q Consensus 625 s~~ 627 (630)
+.+
T Consensus 336 Ssd 338 (720)
T KOG0321|consen 336 SSD 338 (720)
T ss_pred CCC
Confidence 754
No 177
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.41 E-value=6.5e-11 Score=134.37 Aligned_cols=285 Identities=14% Similarity=0.092 Sum_probs=195.3
Q ss_pred ceeEEEEcCCCceEeeecceeeecCccceeEEEeec------ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEE
Q 006825 314 TWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ------NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVA 387 (630)
Q Consensus 314 ~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~------~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVA 387 (630)
....+.-+.||+++ ..|.+|...+..+.+-| .+.+.+.|++|+ +||...+..++++. -+.... ++.
T Consensus 37 ~~V~VyS~~Tg~~i-----~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~-vwd~~~~~Llkt~~-~~~~v~-~~~ 108 (792)
T KOG1963|consen 37 NFVKVYSTATGECI-----TSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIR-VWDWSDGELLKTFD-NNLPVH-ALV 108 (792)
T ss_pred CEEEEEecchHhhh-----hhcccccCccceeeecCCCccceEEEEEecCccEE-EecCCCcEEEEEEe-cCCcee-EEE
Confidence 34567888899999 68999999999999877 466899999999 99999999988876 222211 111
Q ss_pred E----cCCC----------CeEEeecCCC-----------------C---------------------------------
Q 006825 388 S----SVTG----------HKERRSSDER-----------------D--------------------------------- 403 (630)
Q Consensus 388 f----SpdG----------~~lasgS~D~-----------------d--------------------------------- 403 (630)
+ .... ..+.+.+.+- +
T Consensus 109 ~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v 188 (792)
T KOG1963|consen 109 YKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFV 188 (792)
T ss_pred echhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEe
Confidence 1 1100 0011111000 0
Q ss_pred -C--------ccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEE
Q 006825 404 -T--------SSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLA 472 (630)
Q Consensus 404 -t--------~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LA 472 (630)
. ...+.|...+++.++++.. +++|..||+|.+|.--..+... +..+.|.=|...|.+++|+++|.+|.
T Consensus 189 ~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~-~t~t~lHWH~~~V~~L~fS~~G~~Ll 267 (792)
T KOG1963|consen 189 PKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDS-ETCTLLHWHHDEVNSLSFSSDGAYLL 267 (792)
T ss_pred cccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccccc-ccceEEEecccccceeEEecCCceEe
Confidence 0 0023466667778888877 8999999999999754411111 23577888999999999999999999
Q ss_pred EEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEE
Q 006825 473 SAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETV 552 (630)
Q Consensus 473 SgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~V 552 (630)
|||..|.+-+|.+.+++ +++ +..-..+|..+.++||+.+.+....|..|.+-.........+++.-....+
T Consensus 268 SGG~E~VLv~Wq~~T~~--kqf----LPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~--- 338 (792)
T KOG1963|consen 268 SGGREGVLVLWQLETGK--KQF----LPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTP--- 338 (792)
T ss_pred ecccceEEEEEeecCCC--ccc----ccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCc---
Confidence 99999999999999988 444 356668899999999999999998999885443322111111110000000
Q ss_pred EeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe------cCCc------eEEEE-cCCC
Q 006825 553 FALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS------HSDY------DISLV-DRLM 618 (630)
Q Consensus 553 wdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~------H~~~------V~sVa-s~~~ 618 (630)
+ +-.+..+-.+.+++.|. +.++-.+.-++|.+||+-+.+.++.+. +.+. |+.++ +.++
T Consensus 339 -----~---~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~g 410 (792)
T KOG1963|consen 339 -----S---TKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFG 410 (792)
T ss_pred -----c---ccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccc
Confidence 0 01123445678899997 889999999999999999887776663 3333 45555 6667
Q ss_pred cEEEEe
Q 006825 619 LRFAYG 624 (630)
Q Consensus 619 ~~lAsg 624 (630)
.+.++.
T Consensus 411 s~maT~ 416 (792)
T KOG1963|consen 411 SWMATL 416 (792)
T ss_pred eEEEEe
Confidence 777765
No 178
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.41 E-value=1.3e-10 Score=123.10 Aligned_cols=218 Identities=12% Similarity=0.113 Sum_probs=126.5
Q ss_pred eeEEEeec---ceEeec-CCCccEecccCCC-Cce---eEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcce
Q 006825 342 VQELMRRQ---NVEEGN-KDSFDLNNNGSSG-GGM---KSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRS 413 (630)
Q Consensus 342 V~~Lafs~---~laSgS-~D~tvr~vWD~~t-G~~---~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~ 413 (630)
...|+|.| .+.+++ .++.+. +|++.+ |.. ...+. +......++|+|+|+++.
T Consensus 82 p~~i~~~~~g~~l~v~~~~~~~v~-v~~~~~~g~~~~~~~~~~--~~~~~~~~~~~p~g~~l~----------------- 141 (330)
T PRK11028 82 PTHISTDHQGRFLFSASYNANCVS-VSPLDKDGIPVAPIQIIE--GLEGCHSANIDPDNRTLW----------------- 141 (330)
T ss_pred ceEEEECCCCCEEEEEEcCCCeEE-EEEECCCCCCCCceeecc--CCCcccEeEeCCCCCEEE-----------------
Confidence 34577776 344444 478888 999864 322 22222 333456688999888764
Q ss_pred EEEeecCCCeEEEecCCcEEEEEeCCCC-cccce-eeeeEecccCcCEEEEEEccCCCEEEEEeC-CCcEEEEECcC--C
Q 006825 414 SSATDDSQDVSFHGQERVRVRQYGKSCK-DLTAL-YKCQEIQAHNGSIWSIKFSLDGRYLASAGE-DCVIHVWQVVE--S 488 (630)
Q Consensus 414 Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~-el~~~-~~v~tL~gHt~~V~sVaFSpDG~~LASgS~-DgtIrVWDl~t--g 488 (630)
++...+++|++|++... .+... .....+.. ......++|+|+|++|+++.+ +++|.+|++.. +
T Consensus 142 -----------v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~ 209 (330)
T PRK11028 142 -----------VPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHG 209 (330)
T ss_pred -----------EeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCC
Confidence 34445678999998652 22100 00011111 123568999999999988876 89999999973 2
Q ss_pred ce--eeeeecccc-cCcccceEEEEECCCCCEEEEeeC-CCeeeeecccccccccccccCccccccEEEeCC-CCceEEe
Q 006825 489 ER--KGELLEKQE-DGHLNMLLLANGSPEPTSLSPKHL-DNHLEKKRRGRSINRKSLSLDHMVVPETVFALS-DKPICSF 563 (630)
Q Consensus 489 ~~--~~~l~~~~~-~gh~~~V~svafSpdg~~lasgs~-Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdls-gk~l~tL 563 (630)
.. +..+...+. ..+......+.++|++++++++.. ++.| .+|++. .....++
T Consensus 210 ~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I-----------------------~v~~i~~~~~~~~~ 266 (330)
T PRK11028 210 EIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLI-----------------------SVFSVSEDGSVLSF 266 (330)
T ss_pred CEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeE-----------------------EEEEEeCCCCeEEE
Confidence 21 222110000 011123346889999998888743 5667 556551 1111222
Q ss_pred ccCC---CCEEEEEEcCC-CeEEEEEC-CCcEEEEeCC--CCcE--EEEEecCCceEEEE
Q 006825 564 QGHL---DDVLDLSWSKS-QHLLSSSM-DKTVRLWHLS--SKTC--LKIFSHSDYDISLV 614 (630)
Q Consensus 564 ~GHs---~~V~sLafSPd-~~LaSgS~-DgtVrIWDl~--tg~~--l~t~~H~~~V~sVa 614 (630)
.+|. .....++|+|+ ++|+++.. +++|.||++. ++.. +.++.......|++
T Consensus 267 ~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~~~~~g~~P~~~~ 326 (330)
T PRK11028 267 EGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELGRYAVGQGPMWVS 326 (330)
T ss_pred eEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEccccccCCCceEEE
Confidence 2222 23467899999 78776664 9999999874 4443 33343333344443
No 179
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=1.8e-12 Score=150.18 Aligned_cols=231 Identities=14% Similarity=0.117 Sum_probs=170.9
Q ss_pred eeecCCCceeEEEEcCCC-ceEeeecceeeecCccceeEEEeec----ceEeecCCCccEecccCCCCceeEEec-CCcc
Q 006825 307 NEIQEDGTWKKVKEVGTG-RQLTIEEFEMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGMKSKKK-GSWF 380 (630)
Q Consensus 307 ~e~~~dg~~~~l~dv~TG-~~lt~eef~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~~~~lk-~gH~ 380 (630)
....+||. ..||++..= .-...+-+.++..|++.|..|-|.+ .||||+.|+.|. |||+++-+.-.++. ..-.
T Consensus 84 aGG~edG~-I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~-iWDlnn~~tP~~~~~~~~~ 161 (1049)
T KOG0307|consen 84 AGGLEDGN-IVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEIL-IWDLNKPETPFTPGSQAPP 161 (1049)
T ss_pred eccccCCc-eEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEE-EeccCCcCCCCCCCCCCCc
Confidence 34455665 347776641 1111133467788999999999988 799999999999 99998755444432 1234
Q ss_pred CCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccC--cC
Q 006825 381 KSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHN--GS 458 (630)
Q Consensus 381 ~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt--~~ 458 (630)
..|.+|+|...- +..+++++.++++.|||++.++. +-.|.-|. ..
T Consensus 162 ~eI~~lsWNrkv----------------------------qhILAS~s~sg~~~iWDlr~~~p-----ii~ls~~~~~~~ 208 (1049)
T KOG0307|consen 162 SEIKCLSWNRKV----------------------------SHILASGSPSGRAVIWDLRKKKP-----IIKLSDTPGRMH 208 (1049)
T ss_pred ccceEeccchhh----------------------------hHHhhccCCCCCceeccccCCCc-----ccccccCCCccc
Confidence 556666554421 12378889999999999976642 22333343 35
Q ss_pred EEEEEEccCC-CEEEEEeCCC---cEEEEECcCCceeeeeecccccCcccceEEEEECCCC-CEEEEeeCCCeeeeeccc
Q 006825 459 IWSIKFSLDG-RYLASAGEDC---VIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEP-TSLSPKHLDNHLEKKRRG 533 (630)
Q Consensus 459 V~sVaFSpDG-~~LASgS~Dg---tIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg-~~lasgs~Dg~I~i~~~~ 533 (630)
+..|+|+|+. ..|+++++|. .|.+||++........ +.+|...|.++.|++.+ .++++++.|+.|
T Consensus 209 ~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~----~~~H~~GilslsWc~~D~~lllSsgkD~~i------ 278 (1049)
T KOG0307|consen 209 CSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKI----LEGHQRGILSLSWCPQDPRLLLSSGKDNRI------ 278 (1049)
T ss_pred eeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhh----hcccccceeeeccCCCCchhhhcccCCCCe------
Confidence 7899999965 4677777664 5999998755433222 48999999999999986 899999999999
Q ss_pred ccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC--CeEEEEECCCcEEEEeCCCCc
Q 006825 534 RSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKT 599 (630)
Q Consensus 534 ~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd--~~LaSgS~DgtVrIWDl~tg~ 599 (630)
..|+. +++.+.+|....+++..+.|.|. ..++.++.||.|-|+.+....
T Consensus 279 -----------------i~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 279 -----------------ICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred -----------------eEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 77887 88999999988899999999996 799999999999999987643
No 180
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.40 E-value=3.2e-11 Score=126.19 Aligned_cols=256 Identities=10% Similarity=0.070 Sum_probs=178.1
Q ss_pred eeeecCccceeEEEeec---ceEeecCCCccEecccCC------CCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCC
Q 006825 333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSS------GGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERD 403 (630)
Q Consensus 333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~------tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~d 403 (630)
.-+.||.+.|.+|.|+. .||+|+.|..++ +|.+. +.+.++.+...|...|.|++|.....+
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~-~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~--------- 119 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGR-VWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRF--------- 119 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceee-eechHHHHhhcCCCCceeccCccccceEEEEEccCCee---------
Confidence 34789999999999998 799999999999 99875 456666666567789999999764332
Q ss_pred CccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccC---cCEEEEEEccCCCEEEEEeCCCcE
Q 006825 404 TSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHN---GSIWSIKFSLDGRYLASAGEDCVI 480 (630)
Q Consensus 404 t~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt---~~V~sVaFSpDG~~LASgS~DgtI 480 (630)
+++|..+++|..-|+.+++. +.. -.|. +.|+.|..+|-.+.|++.+.|+.|
T Consensus 120 --------------------~~SG~~~~~VI~HDiEt~qs-----i~V-~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V 173 (609)
T KOG4227|consen 120 --------------------LYSGERWGTVIKHDIETKQS-----IYV-ANENNNRGDVYHMDQHPTDNTLIVVTRAKLV 173 (609)
T ss_pred --------------------EecCCCcceeEeeeccccee-----eee-ecccCcccceeecccCCCCceEEEEecCceE
Confidence 58889999999999988753 222 2344 499999999999999999999999
Q ss_pred EEEECcCCceeeeeecccccCcccceEEEEECCC-CCEEEEeeCCCeeeeecccccccc-------cccccCccc-----
Q 006825 481 HVWQVVESERKGELLEKQEDGHLNMLLLANGSPE-PTSLSPKHLDNHLEKKRRGRSINR-------KSLSLDHMV----- 547 (630)
Q Consensus 481 rVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpd-g~~lasgs~Dg~I~i~~~~~~~~~-------~s~s~d~~i----- 547 (630)
.+||.+..+....++. ..........+-|+|. ..+|++.+..+-+.+|++..+... ..+....+-
T Consensus 174 ~~~D~Rd~~~~~~~~~--~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~ 251 (609)
T KOG4227|consen 174 SFIDNRDRQNPISLVL--PANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSL 251 (609)
T ss_pred EEEeccCCCCCCceee--ecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhhee
Confidence 9999987663333321 2344466788999998 667788888787888886553221 011111110
Q ss_pred --------------cccEEEeCCCCceEEec-cCC-------CCEEEEEEcCCCeEEEEECCCcEEEEeCCC-----C--
Q 006825 548 --------------VPETVFALSDKPICSFQ-GHL-------DDVLDLSWSKSQHLLSSSMDKTVRLWHLSS-----K-- 598 (630)
Q Consensus 548 --------------~~~~Vwdlsgk~l~tL~-GHs-------~~V~sLafSPd~~LaSgS~DgtVrIWDl~t-----g-- 598 (630)
.+..+|++-.+.+..|+ .|. ..|.+++|..|..++|||.|..|+||.+.. |
T Consensus 252 ~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~ 331 (609)
T KOG4227|consen 252 WSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFT 331 (609)
T ss_pred eCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCcc
Confidence 11234444222222332 132 246788898886799999999999998853 1
Q ss_pred ----------------cEEEEEe-cCCceEEEE-cCCCcEEEEecc
Q 006825 599 ----------------TCLKIFS-HSDYDISLV-DRLMLRFAYGAF 626 (630)
Q Consensus 599 ----------------~~l~t~~-H~~~V~sVa-s~~~~~lAsgs~ 626 (630)
..+..++ |...|..|. ++-...|.+.+.
T Consensus 332 ~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGV 377 (609)
T KOG4227|consen 332 QIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGV 377 (609)
T ss_pred ccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccch
Confidence 1233445 888888888 666666655543
No 181
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.38 E-value=6.4e-10 Score=116.34 Aligned_cols=202 Identities=17% Similarity=0.129 Sum_probs=136.0
Q ss_pred CccEecccCCCCceeEEecCC--ccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEE
Q 006825 358 SFDLNNNGSSGGGMKSKKKGS--WFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQ 435 (630)
Q Consensus 358 ~tvr~vWD~~tG~~~~~lk~g--H~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~Vri 435 (630)
..+- |+|+++-+.++++..- |...+.+++++..+.|+|-- . ...-|.|.+
T Consensus 106 e~Iy-IydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp--------------------~-------s~t~GdV~l 157 (391)
T KOG2110|consen 106 ESIY-IYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYP--------------------G-------STTSGDVVL 157 (391)
T ss_pred ccEE-EEecccceeehhhhccCCCccceEeeccCCCCceEEec--------------------C-------CCCCceEEE
Confidence 3477 9999999999988732 44445433333444466521 0 112577999
Q ss_pred EeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCc-EEEEECcCCceeeeeecccccCc-ccceEEEEECC
Q 006825 436 YGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCV-IHVWQVVESERKGELLEKQEDGH-LNMLLLANGSP 513 (630)
Q Consensus 436 Wd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~Dgt-IrVWDl~tg~~~~~l~~~~~~gh-~~~V~svafSp 513 (630)
||..+- ..+.++.+|.+.|.+|+|+++|.+|||||+-|| |||+.+.+|+.+.++. .|. ...|.+++|+|
T Consensus 158 ~d~~nl-----~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFR----RG~~~~~IySL~Fs~ 228 (391)
T KOG2110|consen 158 FDTINL-----QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFR----RGTYPVSIYSLSFSP 228 (391)
T ss_pred EEcccc-----eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeee----CCceeeEEEEEEECC
Confidence 988543 467889999999999999999999999999998 7899999999999974 333 45688999999
Q ss_pred CCCEEEEeeCCCeeeeecccccccccccccC------ccc-------ccc---EEEeCCCCceEEeccCCCCE-EEEEEc
Q 006825 514 EPTSLSPKHLDNHLEKKRRGRSINRKSLSLD------HMV-------VPE---TVFALSDKPICSFQGHLDDV-LDLSWS 576 (630)
Q Consensus 514 dg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d------~~i-------~~~---~Vwdlsgk~l~tL~GHs~~V-~sLafS 576 (630)
++++|++.+..++|.+++.........-++. ..+ .|. .+|+.. +...+.+...... ..+++.
T Consensus 229 ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~-R~FAt~~l~~s~~~~~~~l~ 307 (391)
T KOG2110|consen 229 DSQFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQS-RKFATAKLPESGRKNICSLS 307 (391)
T ss_pred CCCeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhc-cceeEEEccCCCccceEEee
Confidence 9999999999999998887663321111110 000 011 223321 2222222222222 334444
Q ss_pred --CC-CeEEEEECCCcEEEEeCCC
Q 006825 577 --KS-QHLLSSSMDKTVRLWHLSS 597 (630)
Q Consensus 577 --Pd-~~LaSgS~DgtVrIWDl~t 597 (630)
+. .++..++.||.+..+.+.-
T Consensus 308 ~~~~~~~v~vas~dG~~y~y~l~~ 331 (391)
T KOG2110|consen 308 SIQKIPRVLVASYDGHLYSYRLPP 331 (391)
T ss_pred ccCCCCEEEEEEcCCeEEEEEcCC
Confidence 34 8899999999999998753
No 182
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=5.8e-11 Score=131.10 Aligned_cols=204 Identities=18% Similarity=0.078 Sum_probs=135.1
Q ss_pred ecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEE
Q 006825 354 GNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRV 433 (630)
Q Consensus 354 gS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~V 433 (630)
++.+..+. +||...+. .+.+. .|...|.+++|||||++++..+.+ ..+..|
T Consensus 180 ~~~~~~i~-i~d~dg~~-~~~lt-~~~~~v~~p~wSPDG~~la~~s~~--------------------------~~~~~i 230 (429)
T PRK01742 180 GSQPYEVR-VADYDGFN-QFIVN-RSSQPLMSPAWSPDGSKLAYVSFE--------------------------NKKSQL 230 (429)
T ss_pred CCceEEEE-EECCCCCC-ceEec-cCCCccccceEcCCCCEEEEEEec--------------------------CCCcEE
Confidence 34467888 99985444 56666 788899999999999988754322 124579
Q ss_pred EEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEe-CCCcEEEE--ECcCCceeeeeecccccCcccceEEEE
Q 006825 434 RQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG-EDCVIHVW--QVVESERKGELLEKQEDGHLNMLLLAN 510 (630)
Q Consensus 434 riWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS-~DgtIrVW--Dl~tg~~~~~l~~~~~~gh~~~V~sva 510 (630)
++||+.+++.. .+..+.+|. ..++|+|||++|+.++ .++.+.|| |+.++.. ..+ ..+...+....
T Consensus 231 ~i~dl~tg~~~---~l~~~~g~~---~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~l-----t~~~~~~~~~~ 298 (429)
T PRK01742 231 VVHDLRSGARK---VVASFRGHN---GAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQL-----TSGAGNNTEPS 298 (429)
T ss_pred EEEeCCCCceE---EEecCCCcc---CceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-Eee-----ccCCCCcCCEE
Confidence 99999776431 233455554 4689999999888765 68876666 5555543 332 34555677899
Q ss_pred ECCCCCEEEEee-CCCeeeeecccccccccccccCccccccEEEeC--CCCceEEeccCCCCEEEEEEcCC-CeEEEEEC
Q 006825 511 GSPEPTSLSPKH-LDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL--SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSM 586 (630)
Q Consensus 511 fSpdg~~lasgs-~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl--sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~ 586 (630)
|+|||+.|+..+ .++.. .||.+ .+.....+ +|.. ..++|+|+ ++|+..+.
T Consensus 299 wSpDG~~i~f~s~~~g~~-----------------------~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~ 352 (429)
T PRK01742 299 WSPDGQSILFTSDRSGSP-----------------------QVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMING 352 (429)
T ss_pred ECCCCCEEEEEECCCCCc-----------------------eEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcC
Confidence 999999877655 45555 45544 33333333 4443 46789999 88888877
Q ss_pred CCcEEEEeCCCCcEEEEEecCCceEEEE-cCCCcEEEEecc
Q 006825 587 DKTVRLWHLSSKTCLKIFSHSDYDISLV-DRLMLRFAYGAF 626 (630)
Q Consensus 587 DgtVrIWDl~tg~~l~t~~H~~~V~sVa-s~~~~~lAsgs~ 626 (630)
++ |.+||+.++++.....+. ....+. +|++..+++++.
T Consensus 353 ~~-i~~~Dl~~g~~~~lt~~~-~~~~~~~sPdG~~i~~~s~ 391 (429)
T PRK01742 353 DN-VVKQDLTSGSTEVLSSTF-LDESPSISPNGIMIIYSST 391 (429)
T ss_pred CC-EEEEECCCCCeEEecCCC-CCCCceECCCCCEEEEEEc
Confidence 66 555999998765433321 223444 778877777653
No 183
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=2.3e-11 Score=121.04 Aligned_cols=155 Identities=21% Similarity=0.282 Sum_probs=112.1
Q ss_pred EEecCCcEEEEEeCCCC-----cccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCce---eeeeec
Q 006825 425 FHGQERVRVRQYGKSCK-----DLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESER---KGELLE 496 (630)
Q Consensus 425 ~Sgs~Dg~VriWd~~~~-----el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~---~~~l~~ 496 (630)
+.|..+|.|.+..++.- +......+-.+++|.++|+.|+|. ..+|++|+ ||.|+-|..+.... .+.+..
T Consensus 26 ~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe 102 (325)
T KOG0649|consen 26 FAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLWE 102 (325)
T ss_pred EEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccchhhhh
Confidence 45555666666654321 111222345668999999999997 55788877 59999998754332 111111
Q ss_pred ccccCcc-----cceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCE
Q 006825 497 KQEDGHL-----NMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDV 570 (630)
Q Consensus 497 ~~~~gh~-----~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V 570 (630)
.....|. ..|.++-..|...-++.++.|+.+ .-|++ +|+..++|+||++.|
T Consensus 103 ~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~-----------------------y~~dlE~G~i~r~~rGHtDYv 159 (325)
T KOG0649|consen 103 VKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVI-----------------------YQVDLEDGRIQREYRGHTDYV 159 (325)
T ss_pred hcCccccCcccCCccceeEeccCCCcEEEecCCeEE-----------------------EEEEecCCEEEEEEcCCccee
Confidence 1112222 346788888887777777789988 77888 899999999999999
Q ss_pred EEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825 571 LDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS 605 (630)
Q Consensus 571 ~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~ 605 (630)
.+++--.. ..++||+.||++||||+++++++.++.
T Consensus 160 H~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie 195 (325)
T KOG0649|consen 160 HSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIE 195 (325)
T ss_pred eeeeecccCcceeecCCCccEEEEeccccceeEEec
Confidence 99998444 899999999999999999999999885
No 184
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.34 E-value=2e-11 Score=133.67 Aligned_cols=202 Identities=14% Similarity=0.107 Sum_probs=138.7
Q ss_pred ccceeEEEeec----ceEeecCCCccEecccCCCCc-------eeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccc
Q 006825 339 SPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGG-------MKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSE 407 (630)
Q Consensus 339 s~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~-------~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~ 407 (630)
...|+.|+|-| .||.++.|+.|+ +|-+.++. ....++ +|...|.++-|.|=
T Consensus 627 gt~vtDl~WdPFD~~rLAVa~ddg~i~-lWr~~a~gl~e~~~tPe~~lt-~h~eKI~slRfHPL---------------- 688 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAVATDDGQIN-LWRLTANGLPENEMTPEKILT-IHGEKITSLRFHPL---------------- 688 (1012)
T ss_pred CceeeecccCCCChHHeeecccCceEE-EEEeccCCCCcccCCcceeee-cccceEEEEEecch----------------
Confidence 35689999988 799999999999 99886543 344566 89999999999882
Q ss_pred cCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcC
Q 006825 408 KGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVE 487 (630)
Q Consensus 408 ~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~t 487 (630)
..+.+++++.|.+|++||+.+..+ ...|.||++.|..++|||||+.+||.+.||+|+||+-+.
T Consensus 689 ------------AadvLa~asyd~Ti~lWDl~~~~~-----~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs 751 (1012)
T KOG1445|consen 689 ------------AADVLAVASYDSTIELWDLANAKL-----YSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRS 751 (1012)
T ss_pred ------------hhhHhhhhhccceeeeeehhhhhh-----hheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCC
Confidence 236688899999999999987653 356899999999999999999999999999999999877
Q ss_pred CceeeeeecccccCc-ccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC---CCCceEEe
Q 006825 488 SERKGELLEKQEDGH-LNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL---SDKPICSF 563 (630)
Q Consensus 488 g~~~~~l~~~~~~gh-~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl---sgk~l~tL 563 (630)
++....- -.+. ...-..|.|.-||+++++.+.|..-. +.+ .+++. .+.++.+.
T Consensus 752 ~e~pv~E----g~gpvgtRgARi~wacdgr~viv~Gfdk~Se----------------RQv---~~Y~Aq~l~~~pl~t~ 808 (1012)
T KOG1445|consen 752 REQPVYE----GKGPVGTRGARILWACDGRIVIVVGFDKSSE----------------RQV---QMYDAQTLDLRPLYTQ 808 (1012)
T ss_pred CCCcccc----CCCCccCcceeEEEEecCcEEEEecccccch----------------hhh---hhhhhhhccCCcceee
Confidence 6532210 0111 12233556666888888877665321 001 23332 22333322
Q ss_pred ccC-CCCEEEEEEcCC--CeEEEEECCCcEEEEeCCCC
Q 006825 564 QGH-LDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSK 598 (630)
Q Consensus 564 ~GH-s~~V~sLafSPd--~~LaSgS~DgtVrIWDl~tg 598 (630)
.-- .-.+.--.+.+| -+|+||-.|.+|.+|.+-..
T Consensus 809 ~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~e 846 (1012)
T KOG1445|consen 809 VLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYE 846 (1012)
T ss_pred eecccCccccccccCCCceEEEecCCCceEEEEEecCC
Confidence 100 001111123345 56789999999999998654
No 185
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.33 E-value=4.8e-12 Score=142.12 Aligned_cols=225 Identities=19% Similarity=0.192 Sum_probs=167.2
Q ss_pred CCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEe
Q 006825 299 DNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKK 375 (630)
Q Consensus 299 ddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~l 375 (630)
.+|+.++... |....++|...|+++| ..+.||+.-++.+|.+. .+|++|+|..|| +|-...|..+..+
T Consensus 200 rtg~~Iitgs---dd~lvKiwS~et~~~l-----As~rGhs~ditdlavs~~n~~iaaaS~D~vIr-vWrl~~~~pvsvL 270 (1113)
T KOG0644|consen 200 RTGRYIITGS---DDRLVKIWSMETARCL-----ASCRGHSGDITDLAVSSNNTMIAAASNDKVIR-VWRLPDGAPVSVL 270 (1113)
T ss_pred cccceEeecC---ccceeeeeeccchhhh-----ccCCCCccccchhccchhhhhhhhcccCceEE-EEecCCCchHHHH
Confidence 3565555433 5567889999999999 99999999999999877 799999999999 9999999999999
Q ss_pred cCCccCCEEEEEEcCCCCeEEeecCCC-----C----------------------------------------------C
Q 006825 376 KGSWFKSIRTVASSVTGHKERRSSDER-----D----------------------------------------------T 404 (630)
Q Consensus 376 k~gH~~~V~sVAfSpdG~~lasgS~D~-----d----------------------------------------------t 404 (630)
+ ||++.|+++||+|-- +.++|+ + .
T Consensus 271 r-ghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~ 345 (1113)
T KOG0644|consen 271 R-GHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEF 345 (1113)
T ss_pred h-ccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchh
Confidence 9 999999999999953 233332 0 0
Q ss_pred ccccCCcceEEEeecCCCe---EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc-CCCEEEEEeCCCcE
Q 006825 405 SSEKGGRRSSSATDDSQDV---SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASAGEDCVI 480 (630)
Q Consensus 405 ~s~~gh~~~Vsa~~~s~d~---l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp-DG~~LASgS~DgtI 480 (630)
..+..+...+.++.+..+. .+++-.+..+.+|++.++. +.+.+.+|...++.|.|+| +.+...+++.||..
T Consensus 346 ~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~-----l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst 420 (1113)
T KOG0644|consen 346 EQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQ-----LLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGST 420 (1113)
T ss_pred hHhhhhccceEEEeccccccccceeeeeeeEeeeeecccch-----hhhhhcccccceeeeeecCCCcHhhhhccCCCce
Confidence 0022233333333333222 3444556667778776653 4678899999999999999 77788899999999
Q ss_pred EEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccc
Q 006825 481 HVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMV 547 (630)
Q Consensus 481 rVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i 547 (630)
.|||+..|..++.. +.+| ..+...+|+++|+.++..-.-|.+.+...+.....+....+..+
T Consensus 421 ~iwdi~eg~pik~y----~~gh-~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~k~ak~dqff 482 (1113)
T KOG0644|consen 421 IIWDIWEGIPIKHY----FIGH-GKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQKKAKYDQFF 482 (1113)
T ss_pred EeeecccCCcceee----eccc-ceeeccccCCCCceEecCCCCCceEEeccCCCccccccccceEe
Confidence 99999999887775 3554 55667899999999988877788877766665554444444433
No 186
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.32 E-value=8.4e-11 Score=120.65 Aligned_cols=193 Identities=13% Similarity=0.132 Sum_probs=142.0
Q ss_pred eeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEee
Q 006825 342 VQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATD 418 (630)
Q Consensus 342 V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~ 418 (630)
..++.|++ +||.|+.|+.+- +||..|...-+.+. +|..+|.+++||+||++|.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vv-I~D~~T~~iar~ls-aH~~pi~sl~WS~dgr~Llts-------------------- 83 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVV-IYDFDTFRIARMLS-AHVRPITSLCWSRDGRKLLTS-------------------- 83 (405)
T ss_pred cceEEeccCcceeeeeccCCcEE-EEEccccchhhhhh-ccccceeEEEecCCCCEeeee--------------------
Confidence 67788988 899999999999 99999988777877 999999999999999988654
Q ss_pred cCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccC-CCEEEEEeCCCcEEEEECcCCceeeeeecc
Q 006825 419 DSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLD-GRYLASAGEDCVIHVWQVVESERKGELLEK 497 (630)
Q Consensus 419 ~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpD-G~~LASgS~DgtIrVWDl~tg~~~~~l~~~ 497 (630)
+.|-.|.+||+..+. +++.+. ...+|+.+.|+|- -+.++..=.+..-.+-++.. ....++..
T Consensus 84 ---------S~D~si~lwDl~~gs-----~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~--~~h~~Lp~ 146 (405)
T KOG1273|consen 84 ---------SRDWSIKLWDLLKGS-----PLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSD--PKHSVLPK 146 (405)
T ss_pred ---------cCCceeEEEeccCCC-----ceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecC--CceeeccC
Confidence 455679999997775 344444 5689999999993 33333333444455555544 22222211
Q ss_pred cccCcccc-eEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCC-CCEEEEE
Q 006825 498 QEDGHLNM-LLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHL-DDVLDLS 574 (630)
Q Consensus 498 ~~~gh~~~-V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs-~~V~sLa 574 (630)
...+..+. .....|.+.|++|++|...|.+ .+++. +-+++..++--+ ..|..+-
T Consensus 147 d~d~dln~sas~~~fdr~g~yIitGtsKGkl-----------------------lv~~a~t~e~vas~rits~~~IK~I~ 203 (405)
T KOG1273|consen 147 DDDGDLNSSASHGVFDRRGKYIITGTSKGKL-----------------------LVYDAETLECVASFRITSVQAIKQII 203 (405)
T ss_pred CCccccccccccccccCCCCEEEEecCcceE-----------------------EEEecchheeeeeeeechheeeeEEE
Confidence 11222222 2234688899999999999988 56665 557777766544 7788999
Q ss_pred EcCC-CeEEEEECCCcEEEEeCC
Q 006825 575 WSKS-QHLLSSSMDKTVRLWHLS 596 (630)
Q Consensus 575 fSPd-~~LaSgS~DgtVrIWDl~ 596 (630)
|+.. .+|+.-+.|..||.++++
T Consensus 204 ~s~~g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 204 VSRKGRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred EeccCcEEEEecCCceEEEEehh
Confidence 9988 899999999999999986
No 187
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.31 E-value=2.6e-11 Score=124.73 Aligned_cols=177 Identities=18% Similarity=0.254 Sum_probs=130.6
Q ss_pred EEEecCCcEEEEEeCCCCcccceeeeeEecccCcC---EEEEEEccCCCEEEEEeCCCcEEEEEC-cCCcee--eeeecc
Q 006825 424 SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGS---IWSIKFSLDGRYLASAGEDCVIHVWQV-VESERK--GELLEK 497 (630)
Q Consensus 424 l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~---V~sVaFSpDG~~LASgS~DgtIrVWDl-~tg~~~--~~l~~~ 497 (630)
+++.+.+--|++||..++++...+. ...|.+. ..+++|+|||.+|+. |..+.|||+|+ +.|... ...+..
T Consensus 126 ~a~ssr~~PIh~wdaftG~lraSy~---~ydh~de~taAhsL~Fs~DGeqlfa-GykrcirvFdt~RpGr~c~vy~t~~~ 201 (406)
T KOG2919|consen 126 FAVSSRDQPIHLWDAFTGKLRASYR---AYDHQDEYTAAHSLQFSPDGEQLFA-GYKRCIRVFDTSRPGRDCPVYTTVTK 201 (406)
T ss_pred eeeccccCceeeeeccccccccchh---hhhhHHhhhhheeEEecCCCCeEee-cccceEEEeeccCCCCCCcchhhhhc
Confidence 6777889999999999998754432 2334443 468999999999985 66789999999 444322 111112
Q ss_pred cccCcccceEEEEECCC-CCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEE
Q 006825 498 QEDGHLNMLLLANGSPE-PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSW 575 (630)
Q Consensus 498 ~~~gh~~~V~svafSpd-g~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLaf 575 (630)
...+..+.+.+++|+|- .+.++.++....+ -|+.- .+.++..+.||.+.|+.|.|
T Consensus 202 ~k~gq~giisc~a~sP~~~~~~a~gsY~q~~-----------------------giy~~~~~~pl~llggh~gGvThL~~ 258 (406)
T KOG2919|consen 202 GKFGQKGIISCFAFSPMDSKTLAVGSYGQRV-----------------------GIYNDDGRRPLQLLGGHGGGVTHLQW 258 (406)
T ss_pred ccccccceeeeeeccCCCCcceeeeccccee-----------------------eeEecCCCCceeeecccCCCeeeEEe
Confidence 23455778899999997 4588888887777 45554 56889999999999999999
Q ss_pred cCC-CeEEEEEC-CCcEEEEeCCC-CcEEEEEe-cCC-ceEEEE---cCCCcEEEEecce
Q 006825 576 SKS-QHLLSSSM-DKTVRLWHLSS-KTCLKIFS-HSD-YDISLV---DRLMLRFAYGAFL 627 (630)
Q Consensus 576 SPd-~~LaSgS~-DgtVrIWDl~t-g~~l~t~~-H~~-~V~sVa---s~~~~~lAsgs~~ 627 (630)
.++ +.|.+|+. |-.|..||++. +..+..+. |.+ .-.-|. .+.+.+||+|++.
T Consensus 259 ~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~td 318 (406)
T KOG2919|consen 259 CEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTD 318 (406)
T ss_pred ccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCC
Confidence 999 88888875 88999999986 56666665 654 222333 8899999998543
No 188
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.31 E-value=3e-11 Score=130.85 Aligned_cols=239 Identities=15% Similarity=0.100 Sum_probs=161.8
Q ss_pred eeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccC
Q 006825 333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKG 409 (630)
Q Consensus 333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~g 409 (630)
..|.||++.|.+|.|.. .|+|||.|--+. |||.-..+.++.+..||+..|.++.|-|.-.
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~i-vWd~~~~KllhsI~TgHtaNIFsvKFvP~tn---------------- 106 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLI-VWDPFEYKLLHSISTGHTANIFSVKFVPYTN---------------- 106 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEE-eecchhcceeeeeecccccceeEEeeeccCC----------------
Confidence 56899999999999987 899999999999 9999988888888889999999999999421
Q ss_pred CcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccc-----eeeeeEecccCcCEEEEEEccCC-CEEEEEeCCCcEEEE
Q 006825 410 GRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTA-----LYKCQEIQAHNGSIWSIKFSLDG-RYLASAGEDCVIHVW 483 (630)
Q Consensus 410 h~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~-----~~~v~tL~gHt~~V~sVaFSpDG-~~LASgS~DgtIrVW 483 (630)
...+++|..|..|+++|+....-.+ ......+.-|+..|..|+-.|++ ..+.++++||+||-+
T Consensus 107 -----------nriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQy 175 (758)
T KOG1310|consen 107 -----------NRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQY 175 (758)
T ss_pred -----------CeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeee
Confidence 1226888999999999987421111 11234467799999999999988 899999999999999
Q ss_pred ECcCCceeeee---e--cccccCcccceEEEEECCC-CCEEEEeeCCCeeeeecccccccccccccCccc--ccc-----
Q 006825 484 QVVESERKGEL---L--EKQEDGHLNMLLLANGSPE-PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMV--VPE----- 550 (630)
Q Consensus 484 Dl~tg~~~~~l---~--~~~~~gh~~~V~svafSpd-g~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i--~~~----- 550 (630)
|++.......- . ...+....-...++.++|. ..+|+.|+.|-..+++++.+... .+..+.+. .+.
T Consensus 176 DiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lk--s~~s~~~~~~~pp~~~~c 253 (758)
T KOG1310|consen 176 DIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLK--SFRSDGTMNTCPPKDCRC 253 (758)
T ss_pred cccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhcc--CCCCCccccCCCCcccch
Confidence 99874322110 0 0001122234568899997 67788898888888887533111 11111111 000
Q ss_pred -EEEeCCCCceEEecc-CCC---CEEEEEEcCC--CeEEEEECCCcEEEEeCCCCcEEEEE
Q 006825 551 -TVFALSDKPICSFQG-HLD---DVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIF 604 (630)
Q Consensus 551 -~Vwdlsgk~l~tL~G-Hs~---~V~sLafSPd--~~LaSgS~DgtVrIWDl~tg~~l~t~ 604 (630)
.-|.. +.. +...| -.. -++-+.|+|+ .+|++=+.+ .|+++|+..++....+
T Consensus 254 v~yf~p-~hl-kn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gE-hVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 254 VRYFSP-GHL-KNSQGNLDRYITCCTYVTFNPNGTELLVSWGGE-HVYLFDVNEDKSPTPY 311 (758)
T ss_pred hheecC-ccc-cCcccccccceeeeEEEEECCCCcEEEEeeCCe-EEEEEeecCCCCceee
Confidence 11111 000 11111 111 2466889999 566666654 6999999887765544
No 189
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.31 E-value=3.3e-11 Score=124.70 Aligned_cols=195 Identities=12% Similarity=0.135 Sum_probs=155.1
Q ss_pred eEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCC
Q 006825 351 VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQER 430 (630)
Q Consensus 351 laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~D 430 (630)
+|.+-.-+++| ++|..||+.+..++ +|...++.|+|..+ +++.++.+++.|
T Consensus 43 vav~lSngsv~-lyd~~tg~~l~~fk-~~~~~~N~vrf~~~---------------------------ds~h~v~s~ssD 93 (376)
T KOG1188|consen 43 VAVSLSNGSVR-LYDKGTGQLLEEFK-GPPATTNGVRFISC---------------------------DSPHGVISCSSD 93 (376)
T ss_pred EEEEecCCeEE-EEeccchhhhheec-CCCCcccceEEecC---------------------------CCCCeeEEeccC
Confidence 56666668999 99999999999999 89988888877653 145678999999
Q ss_pred cEEEEEeCCCCcccceeeeeEecccC-cCEEEEEEccCCCEEEEEe----CCCcEEEEECcCCce-eeeeecccccCccc
Q 006825 431 VRVRQYGKSCKDLTALYKCQEIQAHN-GSIWSIKFSLDGRYLASAG----EDCVIHVWQVVESER-KGELLEKQEDGHLN 504 (630)
Q Consensus 431 g~VriWd~~~~el~~~~~v~tL~gHt-~~V~sVaFSpDG~~LASgS----~DgtIrVWDl~tg~~-~~~l~~~~~~gh~~ 504 (630)
|+||+||++...- .....+.+|. .+..+++.+-.++.++.|. .|-.|.+||++..+. ++.+ ...|..
T Consensus 94 G~Vr~wD~Rs~~e---~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~----~eSH~D 166 (376)
T KOG1188|consen 94 GTVRLWDIRSQAE---SARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQL----NESHND 166 (376)
T ss_pred CeEEEEEeecchh---hhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhh----hhhccC
Confidence 9999999976542 2344566777 4678888887888888875 466799999988765 5554 588999
Q ss_pred ceEEEEECCC-CCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCC----CceEEeccCCCCEEEEEEcCC-
Q 006825 505 MLLLANGSPE-PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD----KPICSFQGHLDDVLDLSWSKS- 578 (630)
Q Consensus 505 ~V~svafSpd-g~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsg----k~l~tL~GHs~~V~sLafSPd- 578 (630)
-|+.+.|+|. ..+|++|+.||.| .+|++.+ ..+.....|...|.++.|..+
T Consensus 167 DVT~lrFHP~~pnlLlSGSvDGLv-----------------------nlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ 223 (376)
T KOG1188|consen 167 DVTQLRFHPSDPNLLLSGSVDGLV-----------------------NLFDTKKDNEEDALLHVINHGSSIHLIGWLSKK 223 (376)
T ss_pred cceeEEecCCCCCeEEeecccceE-----------------------EeeecCCCcchhhHHHhhcccceeeeeeeecCC
Confidence 9999999997 7899999999999 6666632 234444568888999999877
Q ss_pred -CeEEEEECCCcEEEEeCCCCcEEEEE
Q 006825 579 -QHLLSSSMDKTVRLWHLSSKTCLKIF 604 (630)
Q Consensus 579 -~~LaSgS~DgtVrIWDl~tg~~l~t~ 604 (630)
+.|.+-+.+.+..+|++..+.+...+
T Consensus 224 ykrI~clTH~Etf~~~ele~~~~~~~~ 250 (376)
T KOG1188|consen 224 YKRIMCLTHMETFAIYELEDGSEETWL 250 (376)
T ss_pred cceEEEEEccCceeEEEccCCChhhcc
Confidence 68999999999999999887655444
No 190
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.30 E-value=8.8e-11 Score=125.37 Aligned_cols=184 Identities=17% Similarity=0.172 Sum_probs=144.0
Q ss_pred EEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCC-EEEEEeCCCcEEEEECcCCce
Q 006825 414 SSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGR-YLASAGEDCVIHVWQVVESER 490 (630)
Q Consensus 414 Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~-~LASgS~DgtIrVWDl~tg~~ 490 (630)
|+++.|.+.. +.+++.|+++++|.+..+... .++.+.--..+|.+.+|.|+|. .++++|.-..+..||+.+.+.
T Consensus 216 I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~---~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 216 ITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP---KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred ceEEEecCCCceEEEecCCCcEEEEEecCccCh---hheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 3344444333 678899999999988765432 4566666778999999999999 999999999999999988765
Q ss_pred eeeeecccccCcc-cceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCC
Q 006825 491 KGELLEKQEDGHL-NMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLD 568 (630)
Q Consensus 491 ~~~l~~~~~~gh~-~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~ 568 (630)
.+. ....++. ..+.....+|++.+|+..+..|.| .+... +++.+.+++ -.+
T Consensus 293 ~k~---~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I-----------------------~lLhakT~eli~s~K-ieG 345 (514)
T KOG2055|consen 293 TKL---KPPYGVEEKSMERFEVSHDSNFIAIAGNNGHI-----------------------HLLHAKTKELITSFK-IEG 345 (514)
T ss_pred ccc---cCCCCcccchhheeEecCCCCeEEEcccCceE-----------------------Eeehhhhhhhhheee-ecc
Confidence 433 2234443 456678889999999999999988 44444 677777775 557
Q ss_pred CEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEecCCce--EEEE-cCCCcEEEEecce
Q 006825 569 DVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYD--ISLV-DRLMLRFAYGAFL 627 (630)
Q Consensus 569 ~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~H~~~V--~sVa-s~~~~~lAsgs~~ 627 (630)
.|..++|+.+ ..|+..+.+|.|.+||+....|++.|...+.| ++++ +.++.++|+|+.-
T Consensus 346 ~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~ 408 (514)
T KOG2055|consen 346 VVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDS 408 (514)
T ss_pred EEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCc
Confidence 7999999988 88999999999999999999999999855555 4555 7888999999753
No 191
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=4.8e-10 Score=123.98 Aligned_cols=205 Identities=17% Similarity=0.032 Sum_probs=132.3
Q ss_pred CccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEe
Q 006825 358 SFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYG 437 (630)
Q Consensus 358 ~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd 437 (630)
.++. +||.. |...+.+. .|...|.+.+|+|||++|+..+.+ .....|++|+
T Consensus 184 ~~l~-i~D~~-g~~~~~lt-~~~~~v~~p~wSpDg~~la~~s~~--------------------------~~~~~l~~~d 234 (433)
T PRK04922 184 YALQ-VADSD-GYNPQTIL-RSAEPILSPAWSPDGKKLAYVSFE--------------------------RGRSAIYVQD 234 (433)
T ss_pred EEEE-EECCC-CCCceEee-cCCCccccccCCCCCCEEEEEecC--------------------------CCCcEEEEEE
Confidence 4577 88875 45555566 667789999999999988754322 1245689999
Q ss_pred CCCCcccceeeeeEecccCcCEEEEEEccCCCEEE-EEeCCC--cEEEEECcCCceeeeeecccccCcccceEEEEECCC
Q 006825 438 KSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLA-SAGEDC--VIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE 514 (630)
Q Consensus 438 ~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LA-SgS~Dg--tIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpd 514 (630)
+.+++. +.+..+.+.+.+++|+|||+.|+ +.+.++ .|.+||+.+++.. .+ ..+.......+|+||
T Consensus 235 l~~g~~------~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~l-----t~~~~~~~~~~~spD 302 (433)
T PRK04922 235 LATGQR------ELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RL-----TNHFGIDTEPTWAPD 302 (433)
T ss_pred CCCCCE------EEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-EC-----ccCCCCccceEECCC
Confidence 877642 23444555566889999999775 556665 5999999887643 32 334444567899999
Q ss_pred CCEEEEeeC-CCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECCC---c
Q 006825 515 PTSLSPKHL-DNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDK---T 589 (630)
Q Consensus 515 g~~lasgs~-Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~Dg---t 589 (630)
|+.|+..+. ++...+ .++++.+.....+..+......++|+|+ ++|+..+.++ .
T Consensus 303 G~~l~f~sd~~g~~~i---------------------y~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~ 361 (433)
T PRK04922 303 GKSIYFTSDRGGRPQI---------------------YRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYR 361 (433)
T ss_pred CCEEEEEECCCCCceE---------------------EEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCcee
Confidence 998887754 232211 3444433333333333344557899999 7877665443 6
Q ss_pred EEEEeCCCCcEEEEEecCCceEEEE-cCCCcEEEEec
Q 006825 590 VRLWHLSSKTCLKIFSHSDYDISLV-DRLMLRFAYGA 625 (630)
Q Consensus 590 VrIWDl~tg~~l~t~~H~~~V~sVa-s~~~~~lAsgs 625 (630)
|.+||+.+++.. .+.+...+.... ++++..+++.+
T Consensus 362 I~v~d~~~g~~~-~Lt~~~~~~~p~~spdG~~i~~~s 397 (433)
T PRK04922 362 IAVMDLSTGSVR-TLTPGSLDESPSFAPNGSMVLYAT 397 (433)
T ss_pred EEEEECCCCCeE-ECCCCCCCCCceECCCCCEEEEEE
Confidence 999999888755 444433334445 77777666543
No 192
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.27 E-value=1.1e-09 Score=112.68 Aligned_cols=219 Identities=15% Similarity=0.152 Sum_probs=150.5
Q ss_pred CccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC----------------CCccccCCcceEEEeecCC
Q 006825 358 SFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER----------------DTSSEKGGRRSSSATDDSQ 421 (630)
Q Consensus 358 ~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~----------------dt~s~~gh~~~Vsa~~~s~ 421 (630)
..+. |||=...+++.++. ....|++|.++++ +|+..-..+ ++.. ..+..+++....
T Consensus 75 Nkvi-IWDD~k~~~i~el~--f~~~I~~V~l~r~--riVvvl~~~I~VytF~~n~k~l~~~et~~---NPkGlC~~~~~~ 146 (346)
T KOG2111|consen 75 NKVI-IWDDLKERCIIELS--FNSEIKAVKLRRD--RIVVVLENKIYVYTFPDNPKLLHVIETRS---NPKGLCSLCPTS 146 (346)
T ss_pred ceEE-EEecccCcEEEEEE--eccceeeEEEcCC--eEEEEecCeEEEEEcCCChhheeeeeccc---CCCceEeecCCC
Confidence 5677 99977788888776 7889999999885 444433332 2222 122245554444
Q ss_pred Ce---EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCc-EEEEECcCCceeeeeecc
Q 006825 422 DV---SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCV-IHVWQVVESERKGELLEK 497 (630)
Q Consensus 422 d~---l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~Dgt-IrVWDl~tg~~~~~l~~~ 497 (630)
.. .+-|-..|.|++-|+...+.. ....+.+|...|.||+.+.+|.+|||+|..|| |||||..+|+.+.++.
T Consensus 147 ~k~~LafPg~k~GqvQi~dL~~~~~~---~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~R-- 221 (346)
T KOG2111|consen 147 NKSLLAFPGFKTGQVQIVDLASTKPN---APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELR-- 221 (346)
T ss_pred CceEEEcCCCccceEEEEEhhhcCcC---CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeee--
Confidence 33 345567799999998755431 23578999999999999999999999999999 8999999999999974
Q ss_pred cccCc-ccceEEEEECCCCCEEEEeeCCCeeeeecccccc-ccc---ccccCccccccEEEeCCCCceEEeccCCCCEEE
Q 006825 498 QEDGH-LNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSI-NRK---SLSLDHMVVPETVFALSDKPICSFQGHLDDVLD 572 (630)
Q Consensus 498 ~~~gh-~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~-~~~---s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~s 572 (630)
.|. ...|.+++|+|+..+++++++.|++.+....... ... +.+..+.+.+.. ++ +...+..+.-..+...-
T Consensus 222 --RG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky-~~-S~wS~~~f~l~~~~~~~ 297 (346)
T KOG2111|consen 222 --RGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKY-FS-SEWSFAKFQLPQGTQCI 297 (346)
T ss_pred --cCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCCCCccccccccccccccchh-cc-cceeEEEEEccCCCcEE
Confidence 333 3568999999999999999999999877755422 111 111122122211 11 11233344444567778
Q ss_pred EEEcCC-CeEEEEECCCcEEEE
Q 006825 573 LSWSKS-QHLLSSSMDKTVRLW 593 (630)
Q Consensus 573 LafSPd-~~LaSgS~DgtVrIW 593 (630)
++|-.+ +.++..+.||+-+=+
T Consensus 298 ~~fg~~~nsvi~i~~Dgsy~k~ 319 (346)
T KOG2111|consen 298 IAFGSETNTVIAICADGSYYKF 319 (346)
T ss_pred EEecCCCCeEEEEEeCCcEEEE
Confidence 889887 888888899886533
No 193
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.26 E-value=3.7e-10 Score=129.88 Aligned_cols=195 Identities=13% Similarity=0.051 Sum_probs=138.1
Q ss_pred ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecC
Q 006825 350 NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQE 429 (630)
Q Consensus 350 ~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~ 429 (630)
.|.+++.=+.|| |||+..-...+.+..+-...|+++ |++ -...+.++.|-.
T Consensus 1179 ~Ll~tGd~r~IR-IWDa~~E~~~~diP~~s~t~vTaL--S~~--------------------------~~~gn~i~AGfa 1229 (1387)
T KOG1517|consen 1179 HLLVTGDVRSIR-IWDAHKEQVVADIPYGSSTLVTAL--SAD--------------------------LVHGNIIAAGFA 1229 (1387)
T ss_pred eEEecCCeeEEE-EEecccceeEeecccCCCccceee--ccc--------------------------ccCCceEEEeec
Confidence 566666678899 999987666655543433333322 111 112244789999
Q ss_pred CcEEEEEeCCCCcccceeeeeEecccCcC--EEEEEEccCCC-EEEEEeCCCcEEEEECcCCceeeeeecccccCcccce
Q 006825 430 RVRVRQYGKSCKDLTALYKCQEIQAHNGS--IWSIKFSLDGR-YLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNML 506 (630)
Q Consensus 430 Dg~VriWd~~~~el~~~~~v~tL~gHt~~--V~sVaFSpDG~-~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V 506 (630)
||.||+||....... ..+...+.|+.. |..+.+.+.|- .|++|+.||.|++||++.......+...........+
T Consensus 1230 DGsvRvyD~R~a~~d--s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~l 1307 (1387)
T KOG1517|consen 1230 DGSVRVYDRRMAPPD--SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSAL 1307 (1387)
T ss_pred CCceEEeecccCCcc--ccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccc
Confidence 999999999766443 246678899998 99999999765 4999999999999999875322222111111112248
Q ss_pred EEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccC-------CCCEEEEEEcCC-
Q 006825 507 LLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGH-------LDDVLDLSWSKS- 578 (630)
Q Consensus 507 ~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GH-------s~~V~sLafSPd- 578 (630)
+++..|+...++|+|+. +.| +||++.|+.+..++-+ ...+.||+|+|-
T Consensus 1308 Tal~VH~hapiiAsGs~-q~i-----------------------kIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~ 1363 (1387)
T KOG1517|consen 1308 TALTVHEHAPIIASGSA-QLI-----------------------KIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHR 1363 (1387)
T ss_pred eeeeeccCCCeeeecCc-ceE-----------------------EEEecChhhhcccccCcccccCcCCCcceeeecchh
Confidence 89999999999999987 777 7777777666555432 245799999998
Q ss_pred CeEEEEECCCcEEEEeCCCCc
Q 006825 579 QHLLSSSMDKTVRLWHLSSKT 599 (630)
Q Consensus 579 ~~LaSgS~DgtVrIWDl~tg~ 599 (630)
-+||.|+.|.+|.||-....+
T Consensus 1364 ~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1364 LLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred HhhhhccCCceEEEeecCCcC
Confidence 788999999999999876543
No 194
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.26 E-value=7.7e-11 Score=127.48 Aligned_cols=169 Identities=22% Similarity=0.259 Sum_probs=128.4
Q ss_pred CeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccC
Q 006825 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG 501 (630)
Q Consensus 422 d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~g 501 (630)
+.++-.+.||++.+.....+ .-..+.+|.++|.+-.|+|||.-|+|+|+||.||+|.-. |-...+ ...
T Consensus 76 d~~~i~s~DGkf~il~k~~r------VE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-GMLRSt-----l~Q 143 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSAR------VERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-GMLRST-----VVQ 143 (737)
T ss_pred ceEEEEcCCceEEEecccch------hhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-chHHHH-----Hhh
Confidence 45777888999999987544 234578999999999999999999999999999999853 332222 245
Q ss_pred cccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-Ce
Q 006825 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QH 580 (630)
Q Consensus 502 h~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~ 580 (630)
....|+|++|.|+..-++.+- .+++.++... ....+-..+.|.+-|.++.|++. .+
T Consensus 144 ~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~----------------------~n~k~i~WkAHDGiiL~~~W~~~s~l 200 (737)
T KOG1524|consen 144 NEESIRCARWAPNSNSIVFCQ-GGHISIKPLA----------------------ANSKIIRWRAHDGLVLSLSWSTQSNI 200 (737)
T ss_pred cCceeEEEEECCCCCceEEec-CCeEEEeecc----------------------cccceeEEeccCcEEEEeecCccccc
Confidence 567899999999977777663 3344221111 12233456789999999999998 99
Q ss_pred EEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcEEEEecce
Q 006825 581 LLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLRFAYGAFL 627 (630)
Q Consensus 581 LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~lAsgs~~ 627 (630)
++||+.|-..+|||.. |+.+.+-. |..+|++|+ .|+ ..++.+++.
T Consensus 201 I~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n 247 (737)
T KOG1524|consen 201 IASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWSYN 247 (737)
T ss_pred eeecCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeeeeee
Confidence 9999999999999964 66676666 999999999 777 556666543
No 195
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.25 E-value=2.2e-09 Score=118.65 Aligned_cols=215 Identities=9% Similarity=-0.035 Sum_probs=136.8
Q ss_pred eeecCccceeEEEeec---ceEeec---CCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccc
Q 006825 334 MCVGHSPIVQELMRRQ---NVEEGN---KDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSE 407 (630)
Q Consensus 334 ~l~GHs~~V~~Lafs~---~laSgS---~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~ 407 (630)
.+..+...+...+|+| .|+-.+ .+..+. +|++.+|+..... .+.+.+.+++|||||++|+....
T Consensus 193 ~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~-i~dl~~G~~~~l~--~~~~~~~~~~~SPDG~~La~~~~------- 262 (429)
T PRK03629 193 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALV-IQTLANGAVRQVA--SFPRHNGAPAFSPDGSKLAFALS------- 262 (429)
T ss_pred EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEE-EEECCCCCeEEcc--CCCCCcCCeEECCCCCEEEEEEc-------
Confidence 3445666788899998 454333 345677 8999888654322 22233456899999998863211
Q ss_pred cCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCC-CcEEEE--E
Q 006825 408 KGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED-CVIHVW--Q 484 (630)
Q Consensus 408 ~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~D-gtIrVW--D 484 (630)
......|++||..++++ ..+..+...+....|+|||+.|+..+.+ +..+|| +
T Consensus 263 -------------------~~g~~~I~~~d~~tg~~------~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d 317 (429)
T PRK03629 263 -------------------KTGSLNLYVMDLASGQI------RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVN 317 (429)
T ss_pred -------------------CCCCcEEEEEECCCCCE------EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEE
Confidence 01223589999987643 3444555678899999999988877754 455555 6
Q ss_pred CcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCC---eeeeecccccccccccccCccccccEEEeCCCCceE
Q 006825 485 VVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN---HLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPIC 561 (630)
Q Consensus 485 l~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg---~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~ 561 (630)
+.++.. ..+ ..+........|+|||++|+..+.++ .| .+|++.+..+.
T Consensus 318 ~~~g~~-~~l-----t~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I-----------------------~~~dl~~g~~~ 368 (429)
T PRK03629 318 INGGAP-QRI-----TWEGSQNQDADVSSDGKFMVMVSSNGGQQHI-----------------------AKQDLATGGVQ 368 (429)
T ss_pred CCCCCe-EEe-----ecCCCCccCEEECCCCCEEEEEEccCCCceE-----------------------EEEECCCCCeE
Confidence 655543 232 12223345688999999988765432 22 56676444444
Q ss_pred EeccCCCCEEEEEEcCC-CeEEEEECCCc---EEEEeCCCCcEEEEEe-cCCceEEEE
Q 006825 562 SFQGHLDDVLDLSWSKS-QHLLSSSMDKT---VRLWHLSSKTCLKIFS-HSDYDISLV 614 (630)
Q Consensus 562 tL~GHs~~V~sLafSPd-~~LaSgS~Dgt---VrIWDl~tg~~l~t~~-H~~~V~sVa 614 (630)
.+... .......|+|| .+|+.++.|+. +.+|++ +|+..+.+. |.+.+...+
T Consensus 369 ~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~ 424 (429)
T PRK03629 369 VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPA 424 (429)
T ss_pred EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcCCcc
Confidence 55432 23456889999 88998888875 667777 465566665 777666555
No 196
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.25 E-value=9e-11 Score=127.19 Aligned_cols=118 Identities=25% Similarity=0.343 Sum_probs=100.7
Q ss_pred cCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccc
Q 006825 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGR 534 (630)
Q Consensus 455 Ht~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~ 534 (630)
-++.|...+|+|||++||+.|+||.+||+|..+.+.+.. .....+...|++|+|||++|++|+.|..|
T Consensus 289 ~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~-----mkSYFGGLLCvcWSPDGKyIvtGGEDDLV------- 356 (636)
T KOG2394|consen 289 GEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGV-----MKSYFGGLLCVCWSPDGKYIVTGGEDDLV------- 356 (636)
T ss_pred ccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHH-----HHhhccceEEEEEcCCccEEEecCCcceE-------
Confidence 345899999999999999999999999999987765544 35566889999999999999999999999
Q ss_pred cccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcC------------------------------------
Q 006825 535 SINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSK------------------------------------ 577 (630)
Q Consensus 535 ~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSP------------------------------------ 577 (630)
.||.+ .++.++.=+||..+|..|+|.|
T Consensus 357 ----------------tVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~ 420 (636)
T KOG2394|consen 357 ----------------TVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAE 420 (636)
T ss_pred ----------------EEEEeccceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcC
Confidence 88988 6677888899999999999982
Q ss_pred ------------C-CeEEEEECCCcEEEEeCCCCcE
Q 006825 578 ------------S-QHLLSSSMDKTVRLWHLSSKTC 600 (630)
Q Consensus 578 ------------d-~~LaSgS~DgtVrIWDl~tg~~ 600 (630)
. -.|.|.+.|-.+.|||+.....
T Consensus 421 ~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L 456 (636)
T KOG2394|consen 421 GCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVL 456 (636)
T ss_pred CCcccccccccceEEEeecccccceEEEEecchhhc
Confidence 0 1577889999999999976543
No 197
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.23 E-value=1.3e-09 Score=120.47 Aligned_cols=204 Identities=11% Similarity=-0.023 Sum_probs=136.6
Q ss_pred CccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEe
Q 006825 358 SFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYG 437 (630)
Q Consensus 358 ~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd 437 (630)
..+. +||.. |...+.+. .|...|.+.+|+|||++|+..+.. ..+..|++|+
T Consensus 182 ~~l~-~~d~d-g~~~~~lt-~~~~~v~~p~wSpDG~~lay~s~~--------------------------~g~~~i~~~d 232 (435)
T PRK05137 182 KRLA-IMDQD-GANVRYLT-DGSSLVLTPRFSPNRQEITYMSYA--------------------------NGRPRVYLLD 232 (435)
T ss_pred eEEE-EECCC-CCCcEEEe-cCCCCeEeeEECCCCCEEEEEEec--------------------------CCCCEEEEEE
Confidence 3555 67764 55556666 788899999999999988754322 1245799999
Q ss_pred CCCCcccceeeeeEecccCcCEEEEEEccCCCEEE-EEeCCCc--EEEEECcCCceeeeeecccccCcccceEEEEECCC
Q 006825 438 KSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLA-SAGEDCV--IHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE 514 (630)
Q Consensus 438 ~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LA-SgS~Dgt--IrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpd 514 (630)
+.+++. +.+..+.+.+...+|+|||+.|+ +.+.++. |.+||+.++... .+ ..+........|+||
T Consensus 233 l~~g~~------~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~L-----t~~~~~~~~~~~spD 300 (435)
T PRK05137 233 LETGQR------ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT-RL-----TDSPAIDTSPSYSPD 300 (435)
T ss_pred CCCCcE------EEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE-Ec-----cCCCCccCceeEcCC
Confidence 987642 34566777888999999998765 6666666 667788776543 32 334445667899999
Q ss_pred CCEEEEeeC-CCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECC---Cc
Q 006825 515 PTSLSPKHL-DNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMD---KT 589 (630)
Q Consensus 515 g~~lasgs~-Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~D---gt 589 (630)
|+.|+..+. ++...+ .++++.+..+..+..+...+....|+|+ ++|+..+.+ ..
T Consensus 301 G~~i~f~s~~~g~~~I---------------------y~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~ 359 (435)
T PRK05137 301 GSQIVFESDRSGSPQL---------------------YVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFS 359 (435)
T ss_pred CCEEEEEECCCCCCeE---------------------EEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceE
Confidence 998887653 222110 5566666555666545566778899999 888776654 36
Q ss_pred EEEEeCCCCcEEEEEecCCceEEEE-cCCCcEEEEe
Q 006825 590 VRLWHLSSKTCLKIFSHSDYDISLV-DRLMLRFAYG 624 (630)
Q Consensus 590 VrIWDl~tg~~l~t~~H~~~V~sVa-s~~~~~lAsg 624 (630)
|.+||+.++. .+.+.+...+..+. +|++..+++.
T Consensus 360 i~~~d~~~~~-~~~lt~~~~~~~p~~spDG~~i~~~ 394 (435)
T PRK05137 360 IGVMKPDGSG-ERILTSGFLVEGPTWAPNGRVIMFF 394 (435)
T ss_pred EEEEECCCCc-eEeccCCCCCCCCeECCCCCEEEEE
Confidence 8888986554 34444333344455 7777776654
No 198
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.23 E-value=2e-09 Score=122.46 Aligned_cols=254 Identities=16% Similarity=0.116 Sum_probs=171.1
Q ss_pred eeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCC------
Q 006825 333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERD------ 403 (630)
Q Consensus 333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~d------ 403 (630)
..+.=|...|..|+|++ +|.||++.+.+- +|-++|++. +-|. .-...|..+++|||+.+.+..-.|..
T Consensus 245 t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv-~Wq~~T~~k-qfLP-RLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~ 321 (792)
T KOG1963|consen 245 TLLHWHHDEVNSLSFSSDGAYLLSGGREGVLV-LWQLETGKK-QFLP-RLGSPILHIVVSPDSDLYSLVLEDNQIHLIKA 321 (792)
T ss_pred eEEEecccccceeEEecCCceEeecccceEEE-EEeecCCCc-cccc-ccCCeeEEEEEcCCCCeEEEEecCceEEEEec
Confidence 45577999999999999 899999999998 999999983 2222 45688999999999997666555540
Q ss_pred ---------------Ccc-ccCCcceEEEeecCC--CeEEEecCCcEEEEEeCCCCcccceeeeeEe--c------ccCc
Q 006825 404 ---------------TSS-EKGGRRSSSATDDSQ--DVSFHGQERVRVRQYGKSCKDLTALYKCQEI--Q------AHNG 457 (630)
Q Consensus 404 ---------------t~s-~~gh~~~Vsa~~~s~--d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL--~------gHt~ 457 (630)
+.+ .++.+...+.+.+.+ ..++-.+.-+.|.+||.-+.... +..+.. . .|.-
T Consensus 322 ~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i--~~~~v~~~n~~~~~~n~~v 399 (792)
T KOG1963|consen 322 SDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTI--YKLQVCDENYSDGDVNIQV 399 (792)
T ss_pred cchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEecccccee--eeEEEEeecccCCcceeEE
Confidence 011 222344455555555 23777788999999998766432 222221 1 2344
Q ss_pred CEEEEEEccCCCEEEEEe--------CCC--cEEEEECcCCceeeeeecccccCcccceEEEEECCC-C-CEEEEeeCCC
Q 006825 458 SIWSIKFSLDGRYLASAG--------EDC--VIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE-P-TSLSPKHLDN 525 (630)
Q Consensus 458 ~V~sVaFSpDG~~LASgS--------~Dg--tIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpd-g-~~lasgs~Dg 525 (630)
.|++++++..|.+++|.- .|| .+|.|.......-..|.......|...+...++.+. . ..+++++.|+
T Consensus 400 ~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg 479 (792)
T KOG1963|consen 400 GITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDG 479 (792)
T ss_pred eeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCC
Confidence 688999999999999973 444 477898765554444444445778777766666543 2 3788999999
Q ss_pred eeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCCCeEEEEECCCcEEEEeCCC-CcEEEE
Q 006825 526 HLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSS-KTCLKI 603 (630)
Q Consensus 526 ~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~t-g~~l~t 603 (630)
.+++|...........+ ..|.. +.+..| |..++++++|+.|+.|++.+.|++|.|||..+ .+++.+
T Consensus 480 ~~KiW~~~~~~n~~k~~--------s~W~c--~~i~sy--~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~~~~l~~~ 546 (792)
T KOG1963|consen 480 DFKIWVFTDDSNIYKKS--------SNWTC--KAIGSY--HKTPITALCFSQDGSLLAVSFDDTITIWDYDTKNELLCT 546 (792)
T ss_pred eEEEEEEecccccCcCc--------cceEE--eeeecc--ccCcccchhhcCCCcEEEEecCCEEEEecCCChhhhhcc
Confidence 99776653211110000 12211 122223 88899999999999999999999999999988 443333
No 199
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.22 E-value=8.9e-09 Score=109.17 Aligned_cols=256 Identities=9% Similarity=-0.017 Sum_probs=142.7
Q ss_pred eEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEee-cCCCccEecccCC-CCceeEEecCCccCCEEEEEEcC
Q 006825 316 KKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEG-NKDSFDLNNNGSS-GGGMKSKKKGSWFKSIRTVASSV 390 (630)
Q Consensus 316 ~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSg-S~D~tvr~vWD~~-tG~~~~~lk~gH~~~V~sVAfSp 390 (630)
..+|++.++..+ +.++++. +.+....|+++| .|..+ ..++.+. +|++. +|.....-..........++|+|
T Consensus 14 I~~~~~~~~g~l--~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~-~~~~~~~g~l~~~~~~~~~~~p~~i~~~~ 89 (330)
T PRK11028 14 IHVWNLNHEGAL--TLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVL-SYRIADDGALTFAAESPLPGSPTHISTDH 89 (330)
T ss_pred EEEEEECCCCce--eeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEE-EEEECCCCceEEeeeecCCCCceEEEECC
Confidence 456777542222 1223332 224456778887 45444 4577787 89886 44432111112233456799999
Q ss_pred CCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCE
Q 006825 391 TGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRY 470 (630)
Q Consensus 391 dG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~ 470 (630)
+|+++..+ ...++.|.+|++...... ...+..+.++ .....++|+|+|++
T Consensus 90 ~g~~l~v~----------------------------~~~~~~v~v~~~~~~g~~-~~~~~~~~~~-~~~~~~~~~p~g~~ 139 (330)
T PRK11028 90 QGRFLFSA----------------------------SYNANCVSVSPLDKDGIP-VAPIQIIEGL-EGCHSANIDPDNRT 139 (330)
T ss_pred CCCEEEEE----------------------------EcCCCeEEEEEECCCCCC-CCceeeccCC-CcccEeEeCCCCCE
Confidence 99877532 223677899988532211 0122333332 34667899999998
Q ss_pred EEEE-eCCCcEEEEECcCCceeeeee-cccccCcccceEEEEECCCCCEEEEeeC-CCeeeeecccccccccccccCccc
Q 006825 471 LASA-GEDCVIHVWQVVESERKGELL-EKQEDGHLNMLLLANGSPEPTSLSPKHL-DNHLEKKRRGRSINRKSLSLDHMV 547 (630)
Q Consensus 471 LASg-S~DgtIrVWDl~tg~~~~~l~-~~~~~gh~~~V~svafSpdg~~lasgs~-Dg~I~i~~~~~~~~~~s~s~d~~i 547 (630)
|+++ ..+++|.+||+.+...+.... .............++|+|++++++++.. ++.|.+|+....
T Consensus 140 l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~------------ 207 (330)
T PRK11028 140 LWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDP------------ 207 (330)
T ss_pred EEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCC------------
Confidence 8554 566999999997633221100 0000011233567899999999877765 778844433210
Q ss_pred cccEEEeCCC--CceEEecc------CCCCEEEEEEcCC-CeEEEEE-CCCcEEEEeCCCCc-E---EEEEecCCceEEE
Q 006825 548 VPETVFALSD--KPICSFQG------HLDDVLDLSWSKS-QHLLSSS-MDKTVRLWHLSSKT-C---LKIFSHSDYDISL 613 (630)
Q Consensus 548 ~~~~Vwdlsg--k~l~tL~G------Hs~~V~sLafSPd-~~LaSgS-~DgtVrIWDl~tg~-~---l~t~~H~~~V~sV 613 (630)
++ +.+.++.. +......+.|+|+ ++|+++. .+++|.+|++.... . +..+.-....+.+
T Consensus 208 --------~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~ 279 (330)
T PRK11028 208 --------HGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGF 279 (330)
T ss_pred --------CCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCce
Confidence 11 11222221 1123456899999 7777764 48999999986532 2 2222211234456
Q ss_pred E-cCCCcEEEEec
Q 006825 614 V-DRLMLRFAYGA 625 (630)
Q Consensus 614 a-s~~~~~lAsgs 625 (630)
+ ++++..+.++.
T Consensus 280 ~~~~dg~~l~va~ 292 (330)
T PRK11028 280 NIDHSGKYLIAAG 292 (330)
T ss_pred EECCCCCEEEEEE
Confidence 6 77777766553
No 200
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.22 E-value=6.7e-10 Score=125.20 Aligned_cols=230 Identities=16% Similarity=0.108 Sum_probs=164.1
Q ss_pred ccceeEEEeec----ceEeecCCCccEecccCCCCce-----eEEecCCccCCEEEEEEcCCCC--eEEeecCCC-----
Q 006825 339 SPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGM-----KSKKKGSWFKSIRTVASSVTGH--KERRSSDER----- 402 (630)
Q Consensus 339 s~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~-----~~~lk~gH~~~V~sVAfSpdG~--~lasgS~D~----- 402 (630)
...|.++.|.| .+|.|+.+|.|- +||+..+.. +......|...|.++.|..+-. .+.+++.|+
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~-lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVV-LWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEE-EEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 35688899988 799999999999 999987665 2233457999999999987433 377777676
Q ss_pred CC------------cccc------CCcceEEEeecCCCe---EEEecCCcEEEEEeCCCCccc--cee-eeeEecccCcC
Q 006825 403 DT------------SSEK------GGRRSSSATDDSQDV---SFHGQERVRVRQYGKSCKDLT--ALY-KCQEIQAHNGS 458 (630)
Q Consensus 403 dt------------~s~~------gh~~~Vsa~~~s~d~---l~Sgs~Dg~VriWd~~~~el~--~~~-~v~tL~gHt~~ 458 (630)
++ .... .....++++.|.+.. ++.|.++|.|..=.....+.. ..+ .+..+..|.++
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~ 400 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP 400 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence 10 0011 233456666666544 899999999987322221111 111 23467789999
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEECc-CCceeeeeecccccCcccceEEEEECCC-CCEEEEeeCCCeeeeecccccc
Q 006825 459 IWSIKFSLDGRYLASAGEDCVIHVWQVV-ESERKGELLEKQEDGHLNMLLLANGSPE-PTSLSPKHLDNHLEKKRRGRSI 536 (630)
Q Consensus 459 V~sVaFSpDG~~LASgS~DgtIrVWDl~-tg~~~~~l~~~~~~gh~~~V~svafSpd-g~~lasgs~Dg~I~i~~~~~~~ 536 (630)
|++|.++|=+..++..+.|-+||||... ....+.. +..+...|+.++|||- ...++++..+|.+
T Consensus 401 v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~-----~~~~~~~v~~vaWSptrpavF~~~d~~G~l--------- 466 (555)
T KOG1587|consen 401 VYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLS-----LDSSPDYVTDVAWSPTRPAVFATVDGDGNL--------- 466 (555)
T ss_pred eEeeecCCCccceeeeeccceeEeccccCCCCcchh-----hhhccceeeeeEEcCcCceEEEEEcCCCce---------
Confidence 9999999976655554459999999876 4344433 3667777999999998 5677778889999
Q ss_pred cccccccCccccccEEEeC---CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCC
Q 006825 537 NRKSLSLDHMVVPETVFAL---SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSS 597 (630)
Q Consensus 537 ~~~s~s~d~~i~~~~Vwdl---sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~t 597 (630)
.+||+ ...++.+..-+....+.+.|++. ..|+.|..-|+|++|++..
T Consensus 467 --------------~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 467 --------------DIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred --------------ehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 66666 34566666556666778888887 8999999999999999964
No 201
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.21 E-value=2e-10 Score=118.25 Aligned_cols=197 Identities=13% Similarity=0.079 Sum_probs=143.2
Q ss_pred ccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcC
Q 006825 379 WFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGS 458 (630)
Q Consensus 379 H~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~ 458 (630)
-..+|++-||.+|+..+ +.+.....|.||.....++ ....++|+.|...
T Consensus 9 ~~~pitchAwn~drt~i-----------------------------Av~~~~~evhiy~~~~~~~--w~~~htls~Hd~~ 57 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQI-----------------------------AVSPNNHEVHIYSMLGADL--WEPAHTLSEHDKI 57 (361)
T ss_pred ccCceeeeeecCCCceE-----------------------------EeccCCceEEEEEecCCCC--ceeceehhhhCcc
Confidence 34577777777776544 4445556688888766543 3467899999999
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEEC-cCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccccccc
Q 006825 459 IWSIKFSLDGRYLASAGEDCVIHVWQV-VESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSIN 537 (630)
Q Consensus 459 V~sVaFSpDG~~LASgS~DgtIrVWDl-~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~ 537 (630)
|+.|+|+|..+.|+|++.|+...||.. ..++-..++. +..+...+.+|.|+|....+++++....|.++-.....
T Consensus 58 vtgvdWap~snrIvtcs~drnayVw~~~~~~~Wkptlv---LlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~EN- 133 (361)
T KOG1523|consen 58 VTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLV---LLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEN- 133 (361)
T ss_pred eeEEeecCCCCceeEccCCCCccccccCCCCeecccee---EEEeccceeeEeecCcCceEEeccCccEEEEEEEeccc-
Confidence 999999999999999999999999999 4444333332 35677889999999999999999999888443322110
Q ss_pred ccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeC------------------CCC
Q 006825 538 RKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHL------------------SSK 598 (630)
Q Consensus 538 ~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl------------------~tg 598 (630)
..|-. +. .-+-+...|++|.|+|+ -+|+.||.|+.+|++.. .-|
T Consensus 134 -------------dWWVs--Kh--ikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG 196 (361)
T KOG1523|consen 134 -------------DWWVS--KH--IKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFG 196 (361)
T ss_pred -------------ceehh--hh--hCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHH
Confidence 11111 11 11336678999999999 88899999999999853 124
Q ss_pred cEEEEEe-cCCceEEEE-cCCCcEEEEecce
Q 006825 599 TCLKIFS-HSDYDISLV-DRLMLRFAYGAFL 627 (630)
Q Consensus 599 ~~l~t~~-H~~~V~sVa-s~~~~~lAsgs~~ 627 (630)
+++..+. ..++|..+. .+.+..|++-+.+
T Consensus 197 ~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hd 227 (361)
T KOG1523|consen 197 QLMSEASSSGGWVHGVLFSPSGNRLAWVGHD 227 (361)
T ss_pred HHHHhhccCCCceeeeEeCCCCCEeeEecCC
Confidence 5555664 788899999 8888888876543
No 202
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.21 E-value=2e-09 Score=112.60 Aligned_cols=136 Identities=19% Similarity=0.260 Sum_probs=111.9
Q ss_pred EEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEe--CCCcEEEEECcCCceeeeeecccccCcccceEEEE
Q 006825 433 VRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG--EDCVIHVWQVVESERKGELLEKQEDGHLNMLLLAN 510 (630)
Q Consensus 433 VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS--~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~sva 510 (630)
|.|||+++.++ +..+.+...|...+.++.+++.+.+||--+ .-|.|.|||+.+-+.+..+ ..|.+.+.+++
T Consensus 108 IyIydI~~Mkl--LhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I-----~aH~~~lAala 180 (391)
T KOG2110|consen 108 IYIYDIKDMKL--LHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTI-----NAHKGPLAALA 180 (391)
T ss_pred EEEEeccccee--ehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEE-----EecCCceeEEE
Confidence 99999987754 222333345667788888888888888743 3478999999998888875 79999999999
Q ss_pred ECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCC--CCEEEEEEcCC-CeEEEEEC
Q 006825 511 GSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHL--DDVLDLSWSKS-QHLLSSSM 586 (630)
Q Consensus 511 fSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs--~~V~sLafSPd-~~LaSgS~ 586 (630)
|+++|.+||+++..|+|- +||.+ +|+.+.+|.--. -.|.+|+|+|+ ++|+..|.
T Consensus 181 fs~~G~llATASeKGTVI----------------------RVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~ 238 (391)
T KOG2110|consen 181 FSPDGTLLATASEKGTVI----------------------RVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSN 238 (391)
T ss_pred ECCCCCEEEEeccCceEE----------------------EEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecC
Confidence 999999999999999873 88888 889998886433 35799999999 99999999
Q ss_pred CCcEEEEeCCC
Q 006825 587 DKTVRLWHLSS 597 (630)
Q Consensus 587 DgtVrIWDl~t 597 (630)
-+||+||.++.
T Consensus 239 TeTVHiFKL~~ 249 (391)
T KOG2110|consen 239 TETVHIFKLEK 249 (391)
T ss_pred CCeEEEEEecc
Confidence 99999998864
No 203
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.21 E-value=1.1e-09 Score=109.22 Aligned_cols=202 Identities=15% Similarity=0.105 Sum_probs=143.8
Q ss_pred CEEEEEEcCCCCeEEeecCCCC----------------C-----ccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCC
Q 006825 382 SIRTVASSVTGHKERRSSDERD----------------T-----SSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSC 440 (630)
Q Consensus 382 ~V~sVAfSpdG~~lasgS~D~d----------------t-----~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~ 440 (630)
.|.+-|++|-+++++.|+.+++ . ..+.+|...+..+.|..+.+++++. |.|+-|.+..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gd-G~V~gw~W~E 90 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGD-GLVYGWEWNE 90 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeeccC-ceEEEeeehh
Confidence 3445677777777777766651 0 1168899999999999777887765 9999887653
Q ss_pred Cccc-ceeeee--EecccC-----cCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEEC
Q 006825 441 KDLT-ALYKCQ--EIQAHN-----GSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGS 512 (630)
Q Consensus 441 ~el~-~~~~v~--tL~gHt-----~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafS 512 (630)
.+-. ....+. ...-|. -.|++|-..|..+-|+.++.|+.+.-||+++|+..++ +.||...|.++..-
T Consensus 91 ~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~-----~rGHtDYvH~vv~R 165 (325)
T KOG0649|consen 91 EEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQRE-----YRGHTDYVHSVVGR 165 (325)
T ss_pred hhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEE-----EcCCcceeeeeeec
Confidence 3210 000010 112233 3589999999888888888999999999999998888 49999999999986
Q ss_pred CCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEecc---------CC-CCEEEEEEcCCCeE
Q 006825 513 PEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQG---------HL-DDVLDLSWSKSQHL 581 (630)
Q Consensus 513 pdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~G---------Hs-~~V~sLafSPd~~L 581 (630)
.....+++|+.||++ ++|+. +++++..++. |- ..|.+|+-+. .+|
T Consensus 166 ~~~~qilsG~EDGtv-----------------------RvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~e-dWl 221 (325)
T KOG0649|consen 166 NANGQILSGAEDGTV-----------------------RVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNE-DWL 221 (325)
T ss_pred ccCcceeecCCCccE-----------------------EEEeccccceeEEeccccChhhcCcccCceeEEEeccC-ceE
Confidence 566678899999999 66666 5666655432 22 3467777654 566
Q ss_pred EEEECCCcEEEEeCCCCcEEEEEecCCceEEEE
Q 006825 582 LSSSMDKTVRLWHLSSKTCLKIFSHSDYDISLV 614 (630)
Q Consensus 582 aSgS~DgtVrIWDl~tg~~l~t~~H~~~V~sVa 614 (630)
+.|+ -..+-||++++.++..+|+-...|..+.
T Consensus 222 vCGg-Gp~lslwhLrsse~t~vfpipa~v~~v~ 253 (325)
T KOG0649|consen 222 VCGG-GPKLSLWHLRSSESTCVFPIPARVHLVD 253 (325)
T ss_pred EecC-CCceeEEeccCCCceEEEecccceeEee
Confidence 6655 4678999999999999997555555444
No 204
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.20 E-value=2.4e-10 Score=131.65 Aligned_cols=140 Identities=22% Similarity=0.324 Sum_probs=121.3
Q ss_pred EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcc
Q 006825 424 SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHL 503 (630)
Q Consensus 424 l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~ 503 (630)
+++|+--+.|.+|+....+. ...+.||.+.|..+.|+-||++++|.|+|+++|+|++.+.+..... .-+|.
T Consensus 148 i~~gsv~~~iivW~~~~dn~-----p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~----~fgHs 218 (967)
T KOG0974|consen 148 IASGSVFGEIIVWKPHEDNK-----PIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCT----GFGHS 218 (967)
T ss_pred EEeccccccEEEEeccccCC-----cceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcc----ccccc
Confidence 67777888899999874332 1258999999999999999999999999999999999998866522 47999
Q ss_pred cceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCC-CEEEEEEcCC-CeE
Q 006825 504 NMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLD-DVLDLSWSKS-QHL 581 (630)
Q Consensus 504 ~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~-~V~sLafSPd-~~L 581 (630)
..++.+.|.|. .+++++.|-+. ++|...++.+.++.+|.. .|..++..++ ..+
T Consensus 219 aRvw~~~~~~n--~i~t~gedctc-----------------------rvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~ 273 (967)
T KOG0974|consen 219 ARVWACCFLPN--RIITVGEDCTC-----------------------RVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIK 273 (967)
T ss_pred ceeEEEEeccc--eeEEeccceEE-----------------------EEEecccceehhhhhhhhcceeEEEEcCCceEE
Confidence 99999999998 89999999998 888888888889999975 5999999998 889
Q ss_pred EEEECCCcEEEEeCCC
Q 006825 582 LSSSMDKTVRLWHLSS 597 (630)
Q Consensus 582 aSgS~DgtVrIWDl~t 597 (630)
+|++.|+++++||+..
T Consensus 274 vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 274 VTGGNDSTLKLWDLNG 289 (967)
T ss_pred EeeccCcchhhhhhhc
Confidence 9999999999999854
No 205
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.19 E-value=7.7e-10 Score=121.55 Aligned_cols=233 Identities=15% Similarity=0.134 Sum_probs=148.3
Q ss_pred eeecCCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec----ceEeecCCCccEecccCCCCceeEEecCCccCC
Q 006825 307 NEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKS 382 (630)
Q Consensus 307 ~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~ 382 (630)
+..++.|....|==.+-|+.- ..+..|.+|+..|+.|-|+| .||++|.|.+|+ ||.+..| |...
T Consensus 49 n~e~~G~~lgvlPl~~~Gr~~--r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VK-iW~lp~g---------~~q~ 116 (1012)
T KOG1445|consen 49 NIEGEGGKLGVLPLTAKGRRT--RDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVK-IWKLPRG---------HSQK 116 (1012)
T ss_pred eecCCCceEEEEeccccCccc--cccceeecccceeeccCccccchhhhhcccCCCeeE-EEecCCC---------cccc
Confidence 333443344444333334433 23467889999999999999 799999999999 9987533 3322
Q ss_pred EE--EEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCC--CeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcC
Q 006825 383 IR--TVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQ--DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGS 458 (630)
Q Consensus 383 V~--sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~--d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~ 458 (630)
+. .+.|. +....|-++.|.+ |++.....-+.+++||+.+.+ .+.++.+|.+.
T Consensus 117 LSape~~~g-------------------~~~~~vE~l~fHpTaDgil~s~a~g~v~i~D~stqk-----~~~el~~h~d~ 172 (1012)
T KOG1445|consen 117 LSAPEIDVG-------------------GGNVIVECLRFHPTADGILASGAHGSVYITDISTQK-----TAVELSGHTDK 172 (1012)
T ss_pred cCCcceeec-------------------CCceEEEEeecccCcCceEEeccCceEEEEEcccCc-----eeecccCCchh
Confidence 20 01111 1223344444443 455555667899999998765 46678999999
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccc-eEEEEECCCCCEEEE-eeCCCeeeeecccccc
Q 006825 459 IWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNM-LLLANGSPEPTSLSP-KHLDNHLEKKRRGRSI 536 (630)
Q Consensus 459 V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~-V~svafSpdg~~las-gs~Dg~I~i~~~~~~~ 536 (630)
|.++.|+.||.+|+++..|+.|+|||-+......++ ..+|.+. =..+.|...-..|++ |.....++
T Consensus 173 vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~----te~H~~~rdsRv~w~Gn~~rlisTGF~~~R~r-------- 240 (1012)
T KOG1445|consen 173 VQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQT----TEGHGGMRDSRVLWAGNWERLISTGFTTKRIR-------- 240 (1012)
T ss_pred hhccccccCCceEeeecCCcceEEeCCccCCCcccc----ccccccchhheeeeccchhhhhhcccchhhhe--------
Confidence 999999999999999999999999998765433332 3666543 124555544333333 33222221
Q ss_pred cccccccCccccccEEEeC--CCCceEEecc-CCCCEEEEEEcCC-Ce-EEEEECCCcEEEEeCCCCc
Q 006825 537 NRKSLSLDHMVVPETVFAL--SDKPICSFQG-HLDDVLDLSWSKS-QH-LLSSSMDKTVRLWHLSSKT 599 (630)
Q Consensus 537 ~~~s~s~d~~i~~~~Vwdl--sgk~l~tL~G-Hs~~V~sLafSPd-~~-LaSgS~DgtVrIWDl~tg~ 599 (630)
.+ ++|+. -+.++++++- .+-.|.---|.|| ++ +++|-.+.++..+.+...+
T Consensus 241 ---------eV---~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~q 296 (1012)
T KOG1445|consen 241 ---------EV---RAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQ 296 (1012)
T ss_pred ---------ee---eeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEecCCC
Confidence 01 56766 3556666542 2234555668888 54 4577778899988887654
No 206
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.17 E-value=7.9e-09 Score=114.34 Aligned_cols=203 Identities=9% Similarity=-0.050 Sum_probs=135.1
Q ss_pred eeeecCccceeEEEeec---ceEeecC---CCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCcc
Q 006825 333 EMCVGHSPIVQELMRRQ---NVEEGNK---DSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSS 406 (630)
Q Consensus 333 ~~l~GHs~~V~~Lafs~---~laSgS~---D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s 406 (630)
..+..|...|....|+| .|+-.+. +..+. +||+.+|+.. .+. .+.+.+.+.+|+|||+.++....
T Consensus 195 ~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~-~~dl~~g~~~-~l~-~~~g~~~~~~~SPDG~~la~~~~------ 265 (435)
T PRK05137 195 RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVY-LLDLETGQRE-LVG-NFPGMTFAPRFSPDGRKVVMSLS------ 265 (435)
T ss_pred EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEE-EEECCCCcEE-Eee-cCCCcccCcEECCCCCEEEEEEe------
Confidence 45667888899999999 4655543 46788 9999988764 344 56667788999999997752211
Q ss_pred ccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeC-CC--cEEEE
Q 006825 407 EKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE-DC--VIHVW 483 (630)
Q Consensus 407 ~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~-Dg--tIrVW 483 (630)
......|++|+..+++ ...|..|........|+|||++|+..+. ++ .|.+|
T Consensus 266 --------------------~~g~~~Iy~~d~~~~~------~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~ 319 (435)
T PRK05137 266 --------------------QGGNTDIYTMDLRSGT------TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVM 319 (435)
T ss_pred --------------------cCCCceEEEEECCCCc------eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEE
Confidence 0113458888887764 3446667777888999999998887764 33 58888
Q ss_pred ECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCC---eeeeecccccccccccccCccccccEEEeCCCCce
Q 006825 484 QVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN---HLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPI 560 (630)
Q Consensus 484 Dl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg---~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l 560 (630)
|+..+... .+. .+...+....|+|+|+.|+....+. .| .+|++.+...
T Consensus 320 d~~g~~~~-~lt-----~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i-----------------------~~~d~~~~~~ 370 (435)
T PRK05137 320 NADGSNPR-RIS-----FGGGRYSTPVWSPRGDLIAFTKQGGGQFSI-----------------------GVMKPDGSGE 370 (435)
T ss_pred ECCCCCeE-Eee-----cCCCcccCeEECCCCCEEEEEEcCCCceEE-----------------------EEEECCCCce
Confidence 88765443 321 1233455678999999998865432 22 5666655444
Q ss_pred EEeccCCCCEEEEEEcCC-CeEEEEECC------CcEEEEeCCCCcE
Q 006825 561 CSFQGHLDDVLDLSWSKS-QHLLSSSMD------KTVRLWHLSSKTC 600 (630)
Q Consensus 561 ~tL~GHs~~V~sLafSPd-~~LaSgS~D------gtVrIWDl~tg~~ 600 (630)
..+. +...+..+.|+|| ++|+..+.+ ..+.++|+..+..
T Consensus 371 ~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 371 RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence 4443 2235678899999 777655443 2577778765543
No 207
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.17 E-value=6.1e-09 Score=115.20 Aligned_cols=205 Identities=12% Similarity=-0.011 Sum_probs=129.5
Q ss_pred ccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeC
Q 006825 359 FDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGK 438 (630)
Q Consensus 359 tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~ 438 (630)
.+. +||...+. .+.+. .+...+.+.+|||||++|+..+.+ ..+..|++|++
T Consensus 180 ~l~-~~d~dg~~-~~~lt-~~~~~~~~p~wSPDG~~la~~s~~--------------------------~g~~~i~i~dl 230 (429)
T PRK03629 180 ELR-VSDYDGYN-QFVVH-RSPQPLMSPAWSPDGSKLAYVTFE--------------------------SGRSALVIQTL 230 (429)
T ss_pred eEE-EEcCCCCC-CEEee-cCCCceeeeEEcCCCCEEEEEEec--------------------------CCCcEEEEEEC
Confidence 455 67775444 34444 466789999999999988743211 22456889998
Q ss_pred CCCcccceeeeeEecccCcCEEEEEEccCCCEEEEE-eCCC--cEEEEECcCCceeeeeecccccCcccceEEEEECCCC
Q 006825 439 SCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASA-GEDC--VIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEP 515 (630)
Q Consensus 439 ~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASg-S~Dg--tIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg 515 (630)
.+++.. .+..+.+| +..++|+|||++|+.. +.++ .|.+||+.+++.... ..+...+....|+|||
T Consensus 231 ~~G~~~---~l~~~~~~---~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~l------t~~~~~~~~~~wSPDG 298 (429)
T PRK03629 231 ANGAVR---QVASFPRH---NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV------TDGRSNNTEPTWFPDS 298 (429)
T ss_pred CCCCeE---EccCCCCC---cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEc------cCCCCCcCceEECCCC
Confidence 776432 22233444 4568999999988754 4455 488899988764432 2233456788999999
Q ss_pred CEEEEeeCC-CeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECC---CcE
Q 006825 516 TSLSPKHLD-NHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMD---KTV 590 (630)
Q Consensus 516 ~~lasgs~D-g~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~D---gtV 590 (630)
+.|+..+.. +...+ .++++.+.....+..+...+....|+|+ ++|+..+.+ ..|
T Consensus 299 ~~I~f~s~~~g~~~I---------------------y~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I 357 (429)
T PRK03629 299 QNLAYTSDQAGRPQV---------------------YKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHI 357 (429)
T ss_pred CEEEEEeCCCCCceE---------------------EEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceE
Confidence 988877654 22211 2334444444555445555678899999 788766543 358
Q ss_pred EEEeCCCCcEEEEEecCCceEEEE-cCCCcEEEEecc
Q 006825 591 RLWHLSSKTCLKIFSHSDYDISLV-DRLMLRFAYGAF 626 (630)
Q Consensus 591 rIWDl~tg~~l~t~~H~~~V~sVa-s~~~~~lAsgs~ 626 (630)
.+||+.+++.. .+.......... +|++..+++.+.
T Consensus 358 ~~~dl~~g~~~-~Lt~~~~~~~p~~SpDG~~i~~~s~ 393 (429)
T PRK03629 358 AKQDLATGGVQ-VLTDTFLDETPSIAPNGTMVIYSSS 393 (429)
T ss_pred EEEECCCCCeE-EeCCCCCCCCceECCCCCEEEEEEc
Confidence 89999888744 333111122333 788887777654
No 208
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.17 E-value=5.2e-11 Score=129.05 Aligned_cols=123 Identities=21% Similarity=0.347 Sum_probs=106.9
Q ss_pred eeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCC--CCEEEEeeCCC
Q 006825 448 KCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE--PTSLSPKHLDN 525 (630)
Q Consensus 448 ~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpd--g~~lasgs~Dg 525 (630)
.-++|.||++.|+|+.|+.+|.+|+|||.|-.+.|||....+.+..+ ..||...|+++.|-|. .+++++|+.|.
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI----~TgHtaNIFsvKFvP~tnnriv~sgAgDk 117 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSI----STGHTANIFSVKFVPYTNNRIVLSGAGDK 117 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeee----ecccccceeEEeeeccCCCeEEEeccCcc
Confidence 45789999999999999999999999999999999999876666554 5899999999999986 67899999999
Q ss_pred eeeeecccccccccccccCccccccEEEeCC-----------CCceEEeccCCCCEEEEEEcCC--CeEEEEECCCcEEE
Q 006825 526 HLEKKRRGRSINRKSLSLDHMVVPETVFALS-----------DKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRL 592 (630)
Q Consensus 526 ~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdls-----------gk~l~tL~GHs~~V~sLafSPd--~~LaSgS~DgtVrI 592 (630)
.| ++|+++ ...++.+..|...|..|+-.|+ ..+.+++.||+||-
T Consensus 118 ~i-----------------------~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQ 174 (758)
T KOG1310|consen 118 LI-----------------------KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQ 174 (758)
T ss_pred eE-----------------------EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceee
Confidence 99 555553 1345567789999999999998 89999999999999
Q ss_pred EeCCC
Q 006825 593 WHLSS 597 (630)
Q Consensus 593 WDl~t 597 (630)
+|++.
T Consensus 175 yDiRE 179 (758)
T KOG1310|consen 175 YDIRE 179 (758)
T ss_pred ecccC
Confidence 99986
No 209
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.16 E-value=7.6e-09 Score=114.44 Aligned_cols=214 Identities=10% Similarity=-0.003 Sum_probs=135.1
Q ss_pred eeeecCccceeEEEeec---ceEeecC---CCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCcc
Q 006825 333 EMCVGHSPIVQELMRRQ---NVEEGNK---DSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSS 406 (630)
Q Consensus 333 ~~l~GHs~~V~~Lafs~---~laSgS~---D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s 406 (630)
..+..|...|...+|+| .|+..+. +..+. +||+.+|+.... . .+.....+++|+|||++++-..
T Consensus 197 ~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~-~~dl~~g~~~~l-~-~~~g~~~~~~~SpDG~~l~~~~------- 266 (433)
T PRK04922 197 QTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIY-VQDLATGQRELV-A-SFRGINGAPSFSPDGRRLALTL------- 266 (433)
T ss_pred eEeecCCCccccccCCCCCCEEEEEecCCCCcEEE-EEECCCCCEEEe-c-cCCCCccCceECCCCCEEEEEE-------
Confidence 34556667788888988 5666553 34577 899988875432 2 3444455789999999775211
Q ss_pred ccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeC-CCc--EEEE
Q 006825 407 EKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE-DCV--IHVW 483 (630)
Q Consensus 407 ~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~-Dgt--IrVW 483 (630)
+......|++|+..+++ ++.+..|.......+|+|||++|+..+. ++. |.++
T Consensus 267 -------------------s~~g~~~Iy~~d~~~g~------~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~ 321 (433)
T PRK04922 267 -------------------SRDGNPEIYVMDLGSRQ------LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRV 321 (433)
T ss_pred -------------------eCCCCceEEEEECCCCC------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEE
Confidence 11123468999988764 3445667666778999999998887764 445 6666
Q ss_pred ECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCC---eeeeecccccccccccccCccccccEEEeCCCCce
Q 006825 484 QVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN---HLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPI 560 (630)
Q Consensus 484 Dl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg---~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l 560 (630)
++.+++..... ..+ .....++|+|+|++|+....++ .| .+|++.+...
T Consensus 322 dl~~g~~~~lt----~~g--~~~~~~~~SpDG~~Ia~~~~~~~~~~I-----------------------~v~d~~~g~~ 372 (433)
T PRK04922 322 AASGGSAERLT----FQG--NYNARASVSPDGKKIAMVHGSGGQYRI-----------------------AVMDLSTGSV 372 (433)
T ss_pred ECCCCCeEEee----cCC--CCccCEEECCCCCEEEEEECCCCceeE-----------------------EEEECCCCCe
Confidence 77666533221 122 2334689999999988765432 23 6777744334
Q ss_pred EEeccCCCCEEEEEEcCC-CeEEEEECC---CcEEEEeCCCCcEEEEEe-cCCceEE
Q 006825 561 CSFQGHLDDVLDLSWSKS-QHLLSSSMD---KTVRLWHLSSKTCLKIFS-HSDYDIS 612 (630)
Q Consensus 561 ~tL~GHs~~V~sLafSPd-~~LaSgS~D---gtVrIWDl~tg~~l~t~~-H~~~V~s 612 (630)
..+. +........|+|| ++|+..+.+ ..|.+|++. +...+.+. +.+.+..
T Consensus 373 ~~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~g~~~~ 427 (433)
T PRK04922 373 RTLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRLVSADGEVRE 427 (433)
T ss_pred EECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEcccCCCCCCC
Confidence 4443 3334567799999 777766653 457777874 44445454 4444443
No 210
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.15 E-value=5.6e-09 Score=115.37 Aligned_cols=202 Identities=16% Similarity=0.003 Sum_probs=128.1
Q ss_pred ccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeC
Q 006825 359 FDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGK 438 (630)
Q Consensus 359 tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~ 438 (630)
.+. +||. .|...+.+. .+...|.+.+|||||++++..+.+ .....|++||+
T Consensus 177 ~L~-~~D~-dG~~~~~l~-~~~~~v~~p~wSPDG~~la~~s~~--------------------------~~~~~I~~~dl 227 (427)
T PRK02889 177 QLQ-ISDA-DGQNAQSAL-SSPEPIISPAWSPDGTKLAYVSFE--------------------------SKKPVVYVHDL 227 (427)
T ss_pred EEE-EECC-CCCCceEec-cCCCCcccceEcCCCCEEEEEEcc--------------------------CCCcEEEEEEC
Confidence 444 5565 455556666 678889999999999988754322 12346999999
Q ss_pred CCCcccceeeeeEecccCcCEEEEEEccCCCEEE-EEeCCCcEEEEECc--CCceeeeeecccccCcccceEEEEECCCC
Q 006825 439 SCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLA-SAGEDCVIHVWQVV--ESERKGELLEKQEDGHLNMLLLANGSPEP 515 (630)
Q Consensus 439 ~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LA-SgS~DgtIrVWDl~--tg~~~~~l~~~~~~gh~~~V~svafSpdg 515 (630)
.+++. ..+....+.+...+|+|||+.|+ +.+.++..+||.+. .+. ...+ ..+........|+|||
T Consensus 228 ~~g~~------~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~l-----t~~~~~~~~~~wSpDG 295 (427)
T PRK02889 228 ATGRR------RVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRL-----TQSSGIDTEPFFSPDG 295 (427)
T ss_pred CCCCE------EEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEEC-----CCCCCCCcCeEEcCCC
Confidence 87753 22333445667899999999876 56788887777653 333 3332 3344445667899999
Q ss_pred CEEEEeeC-CCeeeeecccccccccccccCccccccEEEe--CCCCceEEeccCCCCEEEEEEcCC-CeEEEEECCC---
Q 006825 516 TSLSPKHL-DNHLEKKRRGRSINRKSLSLDHMVVPETVFA--LSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDK--- 588 (630)
Q Consensus 516 ~~lasgs~-Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwd--lsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~Dg--- 588 (630)
+.|+..+. ++.. .+|. +.+.....+.-+.......+|+|+ ++|+..+.++
T Consensus 296 ~~l~f~s~~~g~~-----------------------~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~ 352 (427)
T PRK02889 296 RSIYFTSDRGGAP-----------------------QIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAF 352 (427)
T ss_pred CEEEEEecCCCCc-----------------------EEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcE
Confidence 98887654 2333 3333 233222222222233456789999 8888777654
Q ss_pred cEEEEeCCCCcEEEEEecCCceEEEE-cCCCcEEEEec
Q 006825 589 TVRLWHLSSKTCLKIFSHSDYDISLV-DRLMLRFAYGA 625 (630)
Q Consensus 589 tVrIWDl~tg~~l~t~~H~~~V~sVa-s~~~~~lAsgs 625 (630)
.|.+||+.+++... +.+........ +|++..+++..
T Consensus 353 ~I~v~d~~~g~~~~-lt~~~~~~~p~~spdg~~l~~~~ 389 (427)
T PRK02889 353 KLYVQDLATGQVTA-LTDTTRDESPSFAPNGRYILYAT 389 (427)
T ss_pred EEEEEECCCCCeEE-ccCCCCccCceECCCCCEEEEEE
Confidence 69999999887543 33222334455 77777766654
No 211
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.14 E-value=1.7e-09 Score=110.25 Aligned_cols=191 Identities=13% Similarity=0.120 Sum_probs=137.4
Q ss_pred cceeEEEeec----ceEeecCCCccEecccCCCCce---eEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcc
Q 006825 340 PIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGM---KSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRR 412 (630)
Q Consensus 340 ~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~---~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~ 412 (630)
..+++.-+.. ++.+.|-|.|+- |||+++|.. +..|. .|.+.|..|||..+|.
T Consensus 151 aPlTSFDWne~dp~~igtSSiDTTCT-iWdie~~~~~~vkTQLI-AHDKEV~DIaf~~~s~------------------- 209 (364)
T KOG0290|consen 151 APLTSFDWNEVDPNLIGTSSIDTTCT-IWDIETGVSGTVKTQLI-AHDKEVYDIAFLKGSR------------------- 209 (364)
T ss_pred CcccccccccCCcceeEeecccCeEE-EEEEeeccccceeeEEE-ecCcceeEEEeccCcc-------------------
Confidence 3445544443 688999999999 999999743 55666 9999999999998543
Q ss_pred eEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc-CCCEEEEEeCC-CcEEEEECcCCce
Q 006825 413 SSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASAGED-CVIHVWQVVESER 490 (630)
Q Consensus 413 ~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp-DG~~LASgS~D-gtIrVWDl~tg~~ 490 (630)
+.+++.+.||.||+||++..+-.. .+.+-..-..+...++|++ |-+++||-..| ..|.|-|++....
T Consensus 210 ---------~~FASvgaDGSvRmFDLR~leHST--IIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t 278 (364)
T KOG0290|consen 210 ---------DVFASVGADGSVRMFDLRSLEHST--IIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT 278 (364)
T ss_pred ---------ceEEEecCCCcEEEEEecccccce--EEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCc
Confidence 457889999999999997665321 2222222246788999998 77899997766 4589999976542
Q ss_pred -eeeeecccccCcccceEEEEECCC-CCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCC-------CceE
Q 006825 491 -KGELLEKQEDGHLNMLLLANGSPE-PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD-------KPIC 561 (630)
Q Consensus 491 -~~~l~~~~~~gh~~~V~svafSpd-g~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsg-------k~l~ 561 (630)
+.. +.+|...|..++|.|. ...|.++++|..+ .+|++.. .++.
T Consensus 279 pva~-----L~~H~a~VNgIaWaPhS~~hictaGDD~qa-----------------------liWDl~q~~~~~~~dPil 330 (364)
T KOG0290|consen 279 PVAR-----LRNHQASVNGIAWAPHSSSHICTAGDDCQA-----------------------LIWDLQQMPRENGEDPIL 330 (364)
T ss_pred ceeh-----hhcCcccccceEecCCCCceeeecCCcceE-----------------------EEEecccccccCCCCchh
Confidence 333 5899999999999997 6788899999988 4555421 2333
Q ss_pred EeccCCCCEEEEEEcCC--CeEEEEECCCcEEE
Q 006825 562 SFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRL 592 (630)
Q Consensus 562 tL~GHs~~V~sLafSPd--~~LaSgS~DgtVrI 592 (630)
.+. -.++|+.|.|++. ..|+-+. .+++.|
T Consensus 331 ay~-a~~EVNqi~Ws~~~~Dwiai~~-~kklei 361 (364)
T KOG0290|consen 331 AYT-AGGEVNQIQWSSSQPDWIAICF-GKKLEI 361 (364)
T ss_pred hhh-ccceeeeeeecccCCCEEEEEe-cCeeeE
Confidence 333 4568999999986 5665554 344443
No 212
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.14 E-value=5.9e-10 Score=120.74 Aligned_cols=181 Identities=15% Similarity=0.186 Sum_probs=134.5
Q ss_pred eeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCC
Q 006825 334 MCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGG 410 (630)
Q Consensus 334 ~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh 410 (630)
....|..+|.+-.++| -|++.+.|+.|+ +|. .+|-...++- ....+|+|++|.|+...++
T Consensus 99 sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iK-iWS-rsGMLRStl~-Q~~~~v~c~~W~p~S~~vl-------------- 161 (737)
T KOG1524|consen 99 SISAHAAAISSGRWSPDGAGLLTAGEDGVIK-IWS-RSGMLRSTVV-QNEESIRCARWAPNSNSIV-------------- 161 (737)
T ss_pred hhhhhhhhhhhcccCCCCceeeeecCCceEE-EEe-ccchHHHHHh-hcCceeEEEEECCCCCceE--------------
Confidence 3467889999999998 799999999999 995 5777777776 7888999999999865433
Q ss_pred cceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCce
Q 006825 411 RRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESER 490 (630)
Q Consensus 411 ~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~ 490 (630)
+..+.-..|+-..... .+-..++|.+.|.++.|++...+++|||+|...||||.. |..
T Consensus 162 --------------~c~g~h~~IKpL~~n~-------k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~ 219 (737)
T KOG1524|consen 162 --------------FCQGGHISIKPLAANS-------KIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GAN 219 (737)
T ss_pred --------------EecCCeEEEeeccccc-------ceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-Ccc
Confidence 3333333344332222 244578999999999999999999999999999999985 333
Q ss_pred eeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEe-ccCCCC
Q 006825 491 KGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSF-QGHLDD 569 (630)
Q Consensus 491 ~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL-~GHs~~ 569 (630)
+.. ...|..+|++++|.|+ +.++.++... + .| +...+.
T Consensus 220 Lf~-----S~~~ey~ITSva~npd-~~~~v~S~nt-~----------------------------------R~~~p~~GS 258 (737)
T KOG1524|consen 220 LFT-----SAAEEYAITSVAFNPE-KDYLLWSYNT-A----------------------------------RFSSPRVGS 258 (737)
T ss_pred ccc-----CChhccceeeeeeccc-cceeeeeeee-e----------------------------------eecCCCccc
Confidence 333 3788999999999999 6665554221 1 12 234577
Q ss_pred EEEEEEcCC-CeEEEEECCCcEEEEe
Q 006825 570 VLDLSWSKS-QHLLSSSMDKTVRLWH 594 (630)
Q Consensus 570 V~sLafSPd-~~LaSgS~DgtVrIWD 594 (630)
|..++||+| ..++.|...|.|.+=.
T Consensus 259 ifnlsWS~DGTQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 259 IFNLSWSADGTQATCGTSTGQLIVAY 284 (737)
T ss_pred eEEEEEcCCCceeeccccCceEEEee
Confidence 899999999 7777777777765533
No 213
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.13 E-value=2.1e-09 Score=123.78 Aligned_cols=225 Identities=12% Similarity=0.136 Sum_probs=149.2
Q ss_pred EEeecceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeec----C
Q 006825 345 LMRRQNVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDD----S 420 (630)
Q Consensus 345 Lafs~~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~----s 420 (630)
.-|.|.++++...-+++ +||...++.+..+.. +. | |+ + .|+.+.+ .
T Consensus 1073 hpf~p~i~~ad~r~~i~-vwd~e~~~~l~~F~n-~~-------~-~~-t-------------------~Vs~l~liNe~D 1122 (1387)
T KOG1517|consen 1073 HPFEPQIAAADDRERIR-VWDWEKGRLLNGFDN-GA-------F-PD-T-------------------RVSDLELINEQD 1122 (1387)
T ss_pred cCCCceeEEcCCcceEE-EEecccCceeccccC-CC-------C-CC-C-------------------ccceeeeecccc
Confidence 33445788777677888 999999988777662 22 1 11 1 1122211 1
Q ss_pred CCeEEEecCCcEEEEEeCCCCcccceeeeeE---eccc----CcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeee
Q 006825 421 QDVSFHGQERVRVRQYGKSCKDLTALYKCQE---IQAH----NGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGE 493 (630)
Q Consensus 421 ~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~t---L~gH----t~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~ 493 (630)
...+.+++.||.||||+--........++.. |.++ .+.=.-++|.....+|+++|.=+.|||||+........
T Consensus 1123 ~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~d 1202 (1387)
T KOG1517|consen 1123 DALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVAD 1202 (1387)
T ss_pred hhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEee
Confidence 1238899999999999642221111222222 2222 22224467777666677777789999999988777666
Q ss_pred eecccccCcccceEEEEECC-CCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC----CCCceEEeccCCC
Q 006825 494 LLEKQEDGHLNMLLLANGSP-EPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL----SDKPICSFQGHLD 568 (630)
Q Consensus 494 l~~~~~~gh~~~V~svafSp-dg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl----sgk~l~tL~GHs~ 568 (630)
++ .+....++++.-.. .|..++.|..||.| ++||. ....+...+.|..
T Consensus 1203 iP----~~s~t~vTaLS~~~~~gn~i~AGfaDGsv-----------------------RvyD~R~a~~ds~v~~~R~h~~ 1255 (1387)
T KOG1517|consen 1203 IP----YGSSTLVTALSADLVHGNIIAAGFADGSV-----------------------RVYDRRMAPPDSLVCVYREHND 1255 (1387)
T ss_pred cc----cCCCccceeecccccCCceEEEeecCCce-----------------------EEeecccCCccccceeecccCC
Confidence 53 44556666665443 37999999999999 55554 2346777888998
Q ss_pred C--EEEEEEcCC--CeEEEEECCCcEEEEeCCCCcEEEEEe---cC---CceEEEE-cCCCcEEEEecc
Q 006825 569 D--VLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIFS---HS---DYDISLV-DRLMLRFAYGAF 626 (630)
Q Consensus 569 ~--V~sLafSPd--~~LaSgS~DgtVrIWDl~tg~~l~t~~---H~---~~V~sVa-s~~~~~lAsgs~ 626 (630)
. |..+.+-+. +.|++||.||.|++||++.......+. |- +.++++. ++..-.+|+|+.
T Consensus 1256 ~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~ 1324 (1387)
T KOG1517|consen 1256 VEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA 1324 (1387)
T ss_pred cccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc
Confidence 8 999999886 779999999999999999753222222 33 3488888 888888888874
No 214
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.13 E-value=8.5e-10 Score=114.53 Aligned_cols=258 Identities=12% Similarity=0.060 Sum_probs=158.9
Q ss_pred ceeeecCccceeEEEeec---ceEeecCCCccEeccc-CCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-----
Q 006825 332 FEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNG-SSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER----- 402 (630)
Q Consensus 332 f~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD-~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~----- 402 (630)
+..+.||...|+....-| .+.+.|.|.++| +|- ...|+.-...+.---..++++.+.++-.+|..|-+..
T Consensus 17 l~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvr-v~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtef 95 (404)
T KOG1409|consen 17 LSKIEGSQDDVNAAILIPKEEGVISVSEDRTVR-VWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEF 95 (404)
T ss_pred hhhhcCchhhhhhheeccCCCCeEEccccceee-eEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEE
Confidence 467889999888877766 788999999999 883 3344433333322233445555555544444332221
Q ss_pred ------C----CccccCCcceEEEeecCCCe-----------------------------------------EEEecCCc
Q 006825 403 ------D----TSSEKGGRRSSSATDDSQDV-----------------------------------------SFHGQERV 431 (630)
Q Consensus 403 ------d----t~s~~gh~~~Vsa~~~s~d~-----------------------------------------l~Sgs~Dg 431 (630)
+ ...-..|...|.+.-|+... .+.|...+
T Consensus 96 s~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~g 175 (404)
T KOG1409|consen 96 ALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSG 175 (404)
T ss_pred EhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEeccccc
Confidence 0 11122233333333332221 23333333
Q ss_pred EEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEE
Q 006825 432 RVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANG 511 (630)
Q Consensus 432 ~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svaf 511 (630)
.|-+-... ......+.++.+|.+.|++++|.+..++|.+|..|..|.+||+--...+.-. ..+|...|..+..
T Consensus 176 qvt~lr~~---~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~e----l~gh~~kV~~l~~ 248 (404)
T KOG1409|consen 176 QITMLKLE---QNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYE----LQGHNDKVQALSY 248 (404)
T ss_pred ceEEEEEe---ecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeee----eccchhhhhhhhh
Confidence 33333221 1223356789999999999999999999999999999999999655433332 4789999988888
Q ss_pred CCCCCEEEEeeCCCeeeeeccccccc-ccccccCc-------------------c-------------------------
Q 006825 512 SPEPTSLSPKHLDNHLEKKRRGRSIN-RKSLSLDH-------------------M------------------------- 546 (630)
Q Consensus 512 Spdg~~lasgs~Dg~I~i~~~~~~~~-~~s~s~d~-------------------~------------------------- 546 (630)
.+--+.+.++..|+.|.+|+...... ...+-.+. .
T Consensus 249 ~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~ 328 (404)
T KOG1409|consen 249 AQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRS 328 (404)
T ss_pred hhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCcc
Confidence 87788899999999999998654211 00000000 0
Q ss_pred cc---------------ccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCC
Q 006825 547 VV---------------PETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSS 597 (630)
Q Consensus 547 i~---------------~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~t 597 (630)
.. ...+.+....++..+..-...|+.+.+-.. ++|+|++.|..|+|||++.
T Consensus 329 ~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 329 SYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred ccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence 00 002222333345554433345888888777 9999999999999999874
No 215
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.13 E-value=4.8e-09 Score=109.62 Aligned_cols=156 Identities=14% Similarity=0.092 Sum_probs=113.1
Q ss_pred ceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCe-EEeecCCCCCccccCCcceEEE
Q 006825 341 IVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHK-ERRSSDERDTSSEKGGRRSSSA 416 (630)
Q Consensus 341 ~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~-lasgS~D~dt~s~~gh~~~Vsa 416 (630)
-++-+++.| .+|.+..|-+|| +++-+. ++..+++.--.+.|+++||-|-+.. ++.|
T Consensus 100 dlr~~aWhqH~~~fava~nddvVr-iy~kss-t~pt~Lks~sQrnvtclawRPlsaselavg------------------ 159 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVR-IYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVG------------------ 159 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEE-EeccCC-CCCceecchhhcceeEEEeccCCcceeeee------------------
Confidence 467788888 588999999999 998766 7777888778889999999996542 2211
Q ss_pred eecCCCeEEEecCCcEEEEEeCCCCcccce-------ee--eeEecccCcCEEEEEEccCCCEEEEEeC-CCcEEEEECc
Q 006825 417 TDDSQDVSFHGQERVRVRQYGKSCKDLTAL-------YK--CQEIQAHNGSIWSIKFSLDGRYLASAGE-DCVIHVWQVV 486 (630)
Q Consensus 417 ~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~-------~~--v~tL~gHt~~V~sVaFSpDG~~LASgS~-DgtIrVWDl~ 486 (630)
. ..-|.+|.....-.... .+ +-.-.|| .+|++|+|++||..|++++. |..|+|||..
T Consensus 160 -----------C-r~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpd 226 (445)
T KOG2139|consen 160 -----------C-RAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPD 226 (445)
T ss_pred -----------e-cceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCC
Confidence 1 22256665432211100 01 1223566 68999999999999999985 5679999999
Q ss_pred CCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccc
Q 006825 487 ESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGR 534 (630)
Q Consensus 487 tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~ 534 (630)
++..+... .--.+.+.-+.|+||+.++.++.-|+..++|+..+
T Consensus 227 tg~~~pL~-----~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q 269 (445)
T KOG2139|consen 227 TGQKIPLI-----PKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQ 269 (445)
T ss_pred CCCccccc-----ccCCCceeeEEEcCCCCEEEEecccceeeeehhcc
Confidence 98766542 23346788999999999999999999997775443
No 216
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.12 E-value=2.5e-09 Score=105.94 Aligned_cols=127 Identities=20% Similarity=0.234 Sum_probs=94.0
Q ss_pred CccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCc
Q 006825 378 SWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNG 457 (630)
Q Consensus 378 gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~ 457 (630)
...+.|.+++|+|+|+.++. +.|..+.+|.+||.+.. .+.++ +..
T Consensus 57 ~~~~~I~~~~WsP~g~~fav---------------------------i~g~~~~~v~lyd~~~~------~i~~~--~~~ 101 (194)
T PF08662_consen 57 KKEGPIHDVAWSPNGNEFAV---------------------------IYGSMPAKVTLYDVKGK------KIFSF--GTQ 101 (194)
T ss_pred cCCCceEEEEECcCCCEEEE---------------------------EEccCCcccEEEcCccc------EeEee--cCC
Confidence 34557999999999987752 34555668999999633 33444 456
Q ss_pred CEEEEEEccCCCEEEEEeCC---CcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccc
Q 006825 458 SIWSIKFSLDGRYLASAGED---CVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGR 534 (630)
Q Consensus 458 ~V~sVaFSpDG~~LASgS~D---gtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~ 534 (630)
.+..|.|+|+|++|+.|+.+ |.|.+||+.+.+.+.+. .|. .+..++|+|+|++++++......
T Consensus 102 ~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~------~~~-~~t~~~WsPdGr~~~ta~t~~r~------- 167 (194)
T PF08662_consen 102 PRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTF------EHS-DATDVEWSPDGRYLATATTSPRL------- 167 (194)
T ss_pred CceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecc------ccC-cEEEEEEcCCCCEEEEEEeccce-------
Confidence 78999999999999999854 56999999987776652 333 46899999999999998654222
Q ss_pred cccccccccCccccccEEEeCCCCceEEe
Q 006825 535 SINRKSLSLDHMVVPETVFALSDKPICSF 563 (630)
Q Consensus 535 ~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL 563 (630)
..+..+ +||+..|+.+...
T Consensus 168 -------~~dng~---~Iw~~~G~~l~~~ 186 (194)
T PF08662_consen 168 -------RVDNGF---KIWSFQGRLLYKK 186 (194)
T ss_pred -------eccccE---EEEEecCeEeEec
Confidence 233444 8999988877654
No 217
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.10 E-value=1.2e-08 Score=101.09 Aligned_cols=117 Identities=19% Similarity=0.327 Sum_probs=88.4
Q ss_pred cCcCEEEEEEccCCCEEEEE--eCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCC---Ceeee
Q 006825 455 HNGSIWSIKFSLDGRYLASA--GEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLD---NHLEK 529 (630)
Q Consensus 455 Ht~~V~sVaFSpDG~~LASg--S~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~D---g~I~i 529 (630)
..++|.+++|+|+|+.||.. ..++.|.+||+. ++.+..+ +...+..+.|+|+|++++.++.+ |.+
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~-------~~~~~n~i~wsP~G~~l~~~g~~n~~G~l-- 127 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSF-------GTQPRNTISWSPDGRFLVLAGFGNLNGDL-- 127 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEee-------cCCCceEEEECCCCCEEEEEEccCCCcEE--
Confidence 34579999999999987554 467899999996 5555443 23566789999999999998754 446
Q ss_pred ecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEE------CCCcEEEEeCCCCcEE
Q 006825 530 KRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSS------MDKTVRLWHLSSKTCL 601 (630)
Q Consensus 530 ~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS------~DgtVrIWDl~tg~~l 601 (630)
.+|+. +.+.+.+++ |. .++.++|+|+ ++|+++. .|..++||+. .|+++
T Consensus 128 ---------------------~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l 183 (194)
T PF08662_consen 128 ---------------------EFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF-QGRLL 183 (194)
T ss_pred ---------------------EEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEe-cCeEe
Confidence 78888 455665554 33 4789999999 8998876 4899999998 57777
Q ss_pred EEEe
Q 006825 602 KIFS 605 (630)
Q Consensus 602 ~t~~ 605 (630)
....
T Consensus 184 ~~~~ 187 (194)
T PF08662_consen 184 YKKP 187 (194)
T ss_pred Eecc
Confidence 6543
No 218
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.06 E-value=4e-08 Score=108.64 Aligned_cols=214 Identities=10% Similarity=0.010 Sum_probs=131.8
Q ss_pred eeeecCccceeEEEeec---ceEeecCC---CccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCcc
Q 006825 333 EMCVGHSPIVQELMRRQ---NVEEGNKD---SFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSS 406 (630)
Q Consensus 333 ~~l~GHs~~V~~Lafs~---~laSgS~D---~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s 406 (630)
..+..+...|...+|+| .|+..+.+ ..+. +||+.+|+... +. .....+.+.+|+|||+.++-
T Consensus 189 ~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~-~~dl~~g~~~~-l~-~~~g~~~~~~~SPDG~~la~--------- 256 (427)
T PRK02889 189 QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVY-VHDLATGRRRV-VA-NFKGSNSAPAWSPDGRTLAV--------- 256 (427)
T ss_pred eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEE-EEECCCCCEEE-ee-cCCCCccceEECCCCCEEEE---------
Confidence 44566777888999998 56655543 3477 99999887643 32 33345668999999998762
Q ss_pred ccCCcceEEEeecCCCeEEEecCCc--EEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeC-CCcEEEE
Q 006825 407 EKGGRRSSSATDDSQDVSFHGQERV--RVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE-DCVIHVW 483 (630)
Q Consensus 407 ~~gh~~~Vsa~~~s~d~l~Sgs~Dg--~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~-DgtIrVW 483 (630)
+...++ .|++++..+++ .+.+..|.+.+....|+|||++|+..+. ++...||
T Consensus 257 -------------------~~~~~g~~~Iy~~d~~~~~------~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy 311 (427)
T PRK02889 257 -------------------ALSRDGNSQIYTVNADGSG------LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIY 311 (427)
T ss_pred -------------------EEccCCCceEEEEECCCCC------cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEE
Confidence 222233 35555655443 3445566666778899999998886664 4677777
Q ss_pred ECc--CCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCC---eeeeecccccccccccccCccccccEEEeCCCC
Q 006825 484 QVV--ESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN---HLEKKRRGRSINRKSLSLDHMVVPETVFALSDK 558 (630)
Q Consensus 484 Dl~--tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg---~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk 558 (630)
.+. ++.. ..+. +.+ ......+|+|+|++|+..+.++ .| .+|++.+.
T Consensus 312 ~~~~~~g~~-~~lt---~~g--~~~~~~~~SpDG~~Ia~~s~~~g~~~I-----------------------~v~d~~~g 362 (427)
T PRK02889 312 RMPASGGAA-QRVT---FTG--SYNTSPRISPDGKLLAYISRVGGAFKL-----------------------YVQDLATG 362 (427)
T ss_pred EEECCCCce-EEEe---cCC--CCcCceEECCCCCEEEEEEccCCcEEE-----------------------EEEECCCC
Confidence 653 3332 2221 122 2233578999999998776543 23 67777443
Q ss_pred ceEEeccCCCCEEEEEEcCC-CeEEEEECCC-c--EEEEeCCCCcEEEEEe-cCCceEEEE
Q 006825 559 PICSFQGHLDDVLDLSWSKS-QHLLSSSMDK-T--VRLWHLSSKTCLKIFS-HSDYDISLV 614 (630)
Q Consensus 559 ~l~tL~GHs~~V~sLafSPd-~~LaSgS~Dg-t--VrIWDl~tg~~l~t~~-H~~~V~sVa 614 (630)
....+..+ .......|+|| ++|+..+.++ . +.+-++ +|+..+.+. +.+.+...+
T Consensus 363 ~~~~lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~ 421 (427)
T PRK02889 363 QVTALTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPS 421 (427)
T ss_pred CeEEccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCc
Confidence 44444432 33467899999 7777776544 2 444445 455555554 444444433
No 219
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.04 E-value=1.1e-08 Score=115.42 Aligned_cols=212 Identities=15% Similarity=0.055 Sum_probs=143.8
Q ss_pred ccEecccCCCC-ceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEe
Q 006825 359 FDLNNNGSSGG-GMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYG 437 (630)
Q Consensus 359 tvr~vWD~~tG-~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd 437 (630)
.+. +|++... .....+ .....|.+++|+|. .+..++.|..+|.|.+||
T Consensus 223 ~~~-vW~~~~p~~Pe~~~--~~~s~v~~~~f~p~----------------------------~p~ll~gG~y~GqV~lWD 271 (555)
T KOG1587|consen 223 VLL-VWSLKNPNTPELVL--ESPSEVTCLKFCPF----------------------------DPNLLAGGCYNGQVVLWD 271 (555)
T ss_pred eEE-EEecCCCCCceEEE--ecCCceeEEEeccC----------------------------CcceEEeeccCceEEEEE
Confidence 456 9998776 333333 46778888888884 445578899999999999
Q ss_pred CCCCccccee-eeeEecccCcCEEEEEEccCC--CEEEEEeCCCcEEEEECcCCceeeeee-ccc------ccCcccceE
Q 006825 438 KSCKDLTALY-KCQEIQAHNGSIWSIKFSLDG--RYLASAGEDCVIHVWQVVESERKGELL-EKQ------EDGHLNMLL 507 (630)
Q Consensus 438 ~~~~el~~~~-~v~tL~gHt~~V~sVaFSpDG--~~LASgS~DgtIrVWDl~tg~~~~~l~-~~~------~~gh~~~V~ 507 (630)
.......... .....-.|..+|+.+.|-.+- .-++|+|.||.|+.|++..-....+.. ... .......+.
T Consensus 272 ~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t 351 (555)
T KOG1587|consen 272 LRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGAT 351 (555)
T ss_pred ccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccccccccccccccccccee
Confidence 9766542111 222345699999999997643 459999999999999886544322211 000 112234677
Q ss_pred EEEECCC-CCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC--CeEEEE
Q 006825 508 LANGSPE-PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSS 584 (630)
Q Consensus 508 svafSpd-g~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd--~~LaSg 584 (630)
++.|.+. ...++.|...|.|..-.+....... ...-+.+..+..|.+.|+++.++|= ..++|+
T Consensus 352 ~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~--------------~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~ 417 (555)
T KOG1587|consen 352 SLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAP--------------EVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSV 417 (555)
T ss_pred eEeeccCCCceEEEEcCCcEEEEEeccCCcccc--------------cccccccccccccCcceEeeecCCCccceeeee
Confidence 8899875 6678889899988431111100000 0111445567789999999999996 566666
Q ss_pred ECCCcEEEEeCC-CCcEEEEEe-cCCceEEEE-cC
Q 006825 585 SMDKTVRLWHLS-SKTCLKIFS-HSDYDISLV-DR 616 (630)
Q Consensus 585 S~DgtVrIWDl~-tg~~l~t~~-H~~~V~sVa-s~ 616 (630)
+ |.+||||... ...++..+. +.++|++++ +|
T Consensus 418 g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSp 451 (555)
T KOG1587|consen 418 G-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSP 451 (555)
T ss_pred c-cceeEeccccCCCCcchhhhhccceeeeeEEcC
Confidence 6 9999999998 667777777 999999999 44
No 220
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.04 E-value=3.3e-08 Score=107.74 Aligned_cols=205 Identities=14% Similarity=0.017 Sum_probs=130.9
Q ss_pred CccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEe
Q 006825 358 SFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYG 437 (630)
Q Consensus 358 ~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd 437 (630)
..+. +||.. |...+.+. .+...+.+.+|+|||++++....+ .....|++|+
T Consensus 170 ~~l~-~~d~~-g~~~~~l~-~~~~~~~~p~~Spdg~~la~~~~~--------------------------~~~~~i~v~d 220 (417)
T TIGR02800 170 YELQ-VADYD-GANPQTIT-RSREPILSPAWSPDGQKLAYVSFE--------------------------SGKPEIYVQD 220 (417)
T ss_pred ceEE-EEcCC-CCCCEEee-cCCCceecccCCCCCCEEEEEEcC--------------------------CCCcEEEEEE
Confidence 3455 66764 44455565 567789999999999988743211 1235799999
Q ss_pred CCCCcccceeeeeEecccCcCEEEEEEccCCCEEE-EEeCCC--cEEEEECcCCceeeeeecccccCcccceEEEEECCC
Q 006825 438 KSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLA-SAGEDC--VIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE 514 (630)
Q Consensus 438 ~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LA-SgS~Dg--tIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpd 514 (630)
+.+++. ..+..+.+.+.+++|+|||+.|+ +.+.++ .|.+|++.++..... ..+........|+|+
T Consensus 221 ~~~g~~------~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l------~~~~~~~~~~~~s~d 288 (417)
T TIGR02800 221 LATGQR------EKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRL------TNGPGIDTEPSWSPD 288 (417)
T ss_pred CCCCCE------EEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEEC------CCCCCCCCCEEECCC
Confidence 877642 23445666778899999998765 455544 588899987654322 223333446789999
Q ss_pred CCEEEEeeCC-CeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECCC---c
Q 006825 515 PTSLSPKHLD-NHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDK---T 589 (630)
Q Consensus 515 g~~lasgs~D-g~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~Dg---t 589 (630)
++.|+..+.. +...+ .++++.+.....+..+...+..+.|+|+ ++|+.++.++ .
T Consensus 289 g~~l~~~s~~~g~~~i---------------------y~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~ 347 (417)
T TIGR02800 289 GKSIAFTSDRGGSPQI---------------------YMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFN 347 (417)
T ss_pred CCEEEEEECCCCCceE---------------------EEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceE
Confidence 9988776543 22111 4455544445555556667788999999 8888888776 8
Q ss_pred EEEEeCCCCcEEEEEecCCceEEEE-cCCCcEEEEec
Q 006825 590 VRLWHLSSKTCLKIFSHSDYDISLV-DRLMLRFAYGA 625 (630)
Q Consensus 590 VrIWDl~tg~~l~t~~H~~~V~sVa-s~~~~~lAsgs 625 (630)
|.+||+.++.... +.....+.... .+++..+++..
T Consensus 348 i~~~d~~~~~~~~-l~~~~~~~~p~~spdg~~l~~~~ 383 (417)
T TIGR02800 348 IAVMDLDGGGERV-LTDTGLDESPSFAPNGRMILYAT 383 (417)
T ss_pred EEEEeCCCCCeEE-ccCCCCCCCceECCCCCEEEEEE
Confidence 9999998865433 33111222223 56666665543
No 221
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.03 E-value=8.1e-08 Score=104.72 Aligned_cols=207 Identities=12% Similarity=0.012 Sum_probs=130.3
Q ss_pred eeeecCccceeEEEeec---ceEeecCC---CccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCcc
Q 006825 333 EMCVGHSPIVQELMRRQ---NVEEGNKD---SFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSS 406 (630)
Q Consensus 333 ~~l~GHs~~V~~Lafs~---~laSgS~D---~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s 406 (630)
..+..+...+....|+| .|+-.+.+ ..+. +||+.+|+..... .+...+.+++|+|||+.++....
T Consensus 183 ~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~-v~d~~~g~~~~~~--~~~~~~~~~~~spDg~~l~~~~~------ 253 (417)
T TIGR02800 183 QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIY-VQDLATGQREKVA--SFPGMNGAPAFSPDGSKLAVSLS------ 253 (417)
T ss_pred EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEE-EEECCCCCEEEee--cCCCCccceEECCCCCEEEEEEC------
Confidence 45566666788888888 45544432 5788 9999988654432 34556677999999987753211
Q ss_pred ccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCC-C--cEEEE
Q 006825 407 EKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED-C--VIHVW 483 (630)
Q Consensus 407 ~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~D-g--tIrVW 483 (630)
......|++|+..++.. ..+..|...+....|+|||++|+..+.. + .|.+|
T Consensus 254 --------------------~~~~~~i~~~d~~~~~~------~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~ 307 (417)
T TIGR02800 254 --------------------KDGNPDIYVMDLDGKQL------TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMM 307 (417)
T ss_pred --------------------CCCCccEEEEECCCCCE------EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEE
Confidence 11234588898876642 3445565566678999999988776643 3 57778
Q ss_pred ECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCC---eeeeecccccccccccccCccccccEEEeCCCCce
Q 006825 484 QVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN---HLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPI 560 (630)
Q Consensus 484 Dl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg---~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l 560 (630)
++.+++.. .+ ..+...+..+.|+|++++++....+. .| .+|++.+...
T Consensus 308 d~~~~~~~-~l-----~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i-----------------------~~~d~~~~~~ 358 (417)
T TIGR02800 308 DADGGEVR-RL-----TFRGGYNASPSWSPDGDLIAFVHREGGGFNI-----------------------AVMDLDGGGE 358 (417)
T ss_pred ECCCCCEE-Ee-----ecCCCCccCeEECCCCCEEEEEEccCCceEE-----------------------EEEeCCCCCe
Confidence 88766533 22 22334566788999999998887664 33 5556543334
Q ss_pred EEeccCCCCEEEEEEcCC-CeEEEEECCC---cEEEEeCCCCcEEEEEe
Q 006825 561 CSFQGHLDDVLDLSWSKS-QHLLSSSMDK---TVRLWHLSSKTCLKIFS 605 (630)
Q Consensus 561 ~tL~GHs~~V~sLafSPd-~~LaSgS~Dg---tVrIWDl~tg~~l~t~~ 605 (630)
..+..+ .......|+|+ ++|+..+.++ .+.+.+. ++.....+.
T Consensus 359 ~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~~ 405 (417)
T TIGR02800 359 RVLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVST-DGRFRARLP 405 (417)
T ss_pred EEccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CCceeeECC
Confidence 444332 23456689999 7787777654 3444443 344444444
No 222
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.03 E-value=6.9e-10 Score=118.75 Aligned_cols=210 Identities=13% Similarity=0.202 Sum_probs=159.1
Q ss_pred EeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCc
Q 006825 352 EEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERV 431 (630)
Q Consensus 352 aSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg 431 (630)
+-|+..+-+- ..|+.|+.....+. -...|+.|.|-.+-+++ +..+..
T Consensus 145 llgGrKGHlA-a~Dw~t~~L~~Ei~--v~Etv~Dv~~LHneq~~------------------------------AVAQK~ 191 (545)
T KOG1272|consen 145 LLGGRKGHLA-AFDWVTKKLHFEIN--VMETVRDVTFLHNEQFF------------------------------AVAQKK 191 (545)
T ss_pred EecCCcccee-eeecccceeeeeee--hhhhhhhhhhhcchHHH------------------------------Hhhhhc
Confidence 4455556666 77778887776654 23456666666554444 334455
Q ss_pred EEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEE
Q 006825 432 RVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANG 511 (630)
Q Consensus 432 ~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svaf 511 (630)
-+.+||-..-+ ++.|+.| ..|..+.|-|---+|++++.-|.++.-|+.+|+.+..+ .--.+.+..+..
T Consensus 192 y~yvYD~~GtE------lHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~-----~t~~G~~~vm~q 259 (545)
T KOG1272|consen 192 YVYVYDNNGTE------LHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASI-----RTGAGRTDVMKQ 259 (545)
T ss_pred eEEEecCCCcE------Eeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHH-----HccCCccchhhc
Confidence 68999876544 3446655 46899999999999999999999999999999988775 444567778888
Q ss_pred CCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCc
Q 006825 512 SPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKT 589 (630)
Q Consensus 512 Spdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~Dgt 589 (630)
.|-...+-.|...|+| .+|.. ..+++..+..|.++|.+|++.++ .|+||.+.|..
T Consensus 260 NP~NaVih~GhsnGtV-----------------------SlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~ 316 (545)
T KOG1272|consen 260 NPYNAVIHLGHSNGTV-----------------------SLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRK 316 (545)
T ss_pred CCccceEEEcCCCceE-----------------------EecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccc
Confidence 8988899999999999 78887 56788889999999999999999 99999999999
Q ss_pred EEEEeCCCCcEEEEEe--cCCceEEEEcCCCcEEEEecceec
Q 006825 590 VRLWHLSSKTCLKIFS--HSDYDISLVDRLMLRFAYGAFLNV 629 (630)
Q Consensus 590 VrIWDl~tg~~l~t~~--H~~~V~sVas~~~~~lAsgs~~nI 629 (630)
|+|||++.-..+.++. |...-.++.....+.++.|..++|
T Consensus 317 ~kIWDlR~~~ql~t~~tp~~a~~ls~SqkglLA~~~G~~v~i 358 (545)
T KOG1272|consen 317 VKIWDLRNFYQLHTYRTPHPASNLSLSQKGLLALSYGDHVQI 358 (545)
T ss_pred eeEeeeccccccceeecCCCccccccccccceeeecCCeeee
Confidence 9999999988777775 444433444555555666665544
No 223
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.98 E-value=2.3e-08 Score=105.40 Aligned_cols=223 Identities=13% Similarity=0.082 Sum_probs=155.5
Q ss_pred cceeeecCccceeEEEeec-ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccC
Q 006825 331 EFEMCVGHSPIVQELMRRQ-NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKG 409 (630)
Q Consensus 331 ef~~l~GHs~~V~~Lafs~-~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~g 409 (630)
+..++.+-+..|..++... .|.++-.++.+. +|..+.+. -|.....-+|.-| |-+.+
T Consensus 97 ~~~~~~l~~~~I~gl~~~dg~Litc~~sG~l~-~~~~k~~d-------~hss~l~~la~g~-g~~~~------------- 154 (412)
T KOG3881|consen 97 DAKTVSLGTKSIKGLKLADGTLITCVSSGNLQ-VRHDKSGD-------LHSSKLIKLATGP-GLYDV------------- 154 (412)
T ss_pred cccccccccccccchhhcCCEEEEEecCCcEE-EEeccCCc-------cccccceeeecCC-ceeee-------------
Confidence 3445566677777777776 677777778888 88776543 2322222233222 11111
Q ss_pred CcceEEEeecCCCeEEEecCC--cEEEEEeCCCCcccceeeeeEeccc-----------CcCEEEEEEccC--CCEEEEE
Q 006825 410 GRRSSSATDDSQDVSFHGQER--VRVRQYGKSCKDLTALYKCQEIQAH-----------NGSIWSIKFSLD--GRYLASA 474 (630)
Q Consensus 410 h~~~Vsa~~~s~d~l~Sgs~D--g~VriWd~~~~el~~~~~v~tL~gH-----------t~~V~sVaFSpD--G~~LASg 474 (630)
.-.+-.+..+++|+.. ..+.+||+... .+.+.+- .-.++++.|-+. ...|||+
T Consensus 155 -----r~~~~~p~Iva~GGke~~n~lkiwdle~~-------~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~ 222 (412)
T KOG3881|consen 155 -----RQTDTDPYIVATGGKENINELKIWDLEQS-------KQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATI 222 (412)
T ss_pred -----ccCCCCCceEecCchhcccceeeeecccc-------eeeeeccCCCCccccceeeeeeccceecCCCCCceEEEE
Confidence 1111123446778888 78899988654 2223321 124678899887 8899999
Q ss_pred eCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEe
Q 006825 475 GEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFA 554 (630)
Q Consensus 475 S~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwd 554 (630)
..-+.||+||...+.+...- +.--..++.++...|++++|+++-.-+.+ ..||
T Consensus 223 T~~hqvR~YDt~~qRRPV~~----fd~~E~~is~~~l~p~gn~Iy~gn~~g~l-----------------------~~FD 275 (412)
T KOG3881|consen 223 TRYHQVRLYDTRHQRRPVAQ----FDFLENPISSTGLTPSGNFIYTGNTKGQL-----------------------AKFD 275 (412)
T ss_pred ecceeEEEecCcccCcceeE----eccccCcceeeeecCCCcEEEEecccchh-----------------------heec
Confidence 99999999999876644322 24446889999999999999999888877 7888
Q ss_pred C-CCCceEE-eccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEecCCceEEEE
Q 006825 555 L-SDKPICS-FQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYDISLV 614 (630)
Q Consensus 555 l-sgk~l~t-L~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~H~~~V~sVa 614 (630)
+ .++.+.. |.|-++.|.+|..+|. .+|++++.|..|||+|+.+.+++....-....++|.
T Consensus 276 ~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il 338 (412)
T KOG3881|consen 276 LRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFIL 338 (412)
T ss_pred ccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEE
Confidence 8 4555544 8999999999999999 999999999999999999977765544333444444
No 224
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.97 E-value=1.9e-07 Score=96.87 Aligned_cols=295 Identities=12% Similarity=0.008 Sum_probs=167.7
Q ss_pred eecCCCCcccCCCccccccCCCCCcccccccEEEEECCCC--------------------cEEEEeeecCCCceeEEEEc
Q 006825 262 SINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNG--------------------KEFVVNEIQEDGTWKKVKEV 321 (630)
Q Consensus 262 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG--------------------~~~~v~e~~~dg~~~~l~dv 321 (630)
+|||+|+||+..+++ ...|||..+- ++++.-.+..+++ ..+|++
T Consensus 15 ~fSp~g~yiAs~~~y---------------rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~-vqvwsl 78 (447)
T KOG4497|consen 15 SFSPCGNYIASLSRY---------------RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPK-VQVWSL 78 (447)
T ss_pred eECCCCCeeeeeeee---------------EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccce-EEEEEe
Confidence 899999999555543 3455553221 2233333334444 335555
Q ss_pred CCCceEeeecceeeecCccceeEEEeec----ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEe
Q 006825 322 GTGRQLTIEEFEMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERR 397 (630)
Q Consensus 322 ~TG~~lt~eef~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~las 397 (630)
.--+.- ..+-.-...+..+.++| .|.+..-|-.+- +|.+.|.+.....- -+..++.++|.|||++.+-
T Consensus 79 ~Qpew~-----ckIdeg~agls~~~WSPdgrhiL~tseF~lriT-VWSL~t~~~~~~~~--pK~~~kg~~f~~dg~f~ai 150 (447)
T KOG4497|consen 79 VQPEWY-----CKIDEGQAGLSSISWSPDGRHILLTSEFDLRIT-VWSLNTQKGYLLPH--PKTNVKGYAFHPDGQFCAI 150 (447)
T ss_pred ecceeE-----EEeccCCCcceeeeECCCcceEeeeecceeEEE-EEEeccceeEEecc--cccCceeEEECCCCceeee
Confidence 433332 33333445566778888 677888888888 99998866544322 2335688999999998766
Q ss_pred ecCCC--C---Cc---------cccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEE
Q 006825 398 SSDER--D---TS---------SEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIK 463 (630)
Q Consensus 398 gS~D~--d---t~---------s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVa 463 (630)
.+.-. + .. ..+-.+-..+.+..+++ +.-+.+||.--. +.+.. ....-.|..++
T Consensus 151 ~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPd-------g~~laVwd~~Le-----ykv~a-Ye~~lG~k~v~ 217 (447)
T KOG4497|consen 151 LSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPD-------GNWLAVWDNVLE-----YKVYA-YERGLGLKFVE 217 (447)
T ss_pred eecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCC-------CcEEEEecchhh-----heeee-eeeccceeEEE
Confidence 54332 1 00 01112222333344443 445667764211 11111 11224588999
Q ss_pred EccCCCEEEEEeCCCcEEEEECcCCceeeeeeccc---------------------------------------------
Q 006825 464 FSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQ--------------------------------------------- 498 (630)
Q Consensus 464 FSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~--------------------------------------------- 498 (630)
|+|.+++|+.|+.|+.+||-+--+.+...++....
T Consensus 218 wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE 297 (447)
T KOG4497|consen 218 WSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYE 297 (447)
T ss_pred eccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhh
Confidence 99999999999999999997755444333321000
Q ss_pred ----------------ccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEE
Q 006825 499 ----------------EDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICS 562 (630)
Q Consensus 499 ----------------~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~t 562 (630)
+......+-.++|++|..++++- .|. ....-.+|++....++.
T Consensus 298 ~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTr-nd~--------------------~PnalW~Wdlq~l~l~a 356 (447)
T KOG4497|consen 298 QQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATR-NDK--------------------YPNALWLWDLQNLKLHA 356 (447)
T ss_pred hhhcceeeecccCCCCCCCcccccceeeecCCceEEeee-cCC--------------------CCceEEEEechhhhhhh
Confidence 00001122334455554444442 111 01112688887666666
Q ss_pred eccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEecCCceEEEE
Q 006825 563 FQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYDISLV 614 (630)
Q Consensus 563 L~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~H~~~V~sVa 614 (630)
.--...+|....|.|. ..|+.+-.-..+++|-..-..++..-...-.|..+.
T Consensus 357 vLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~~GF~i~~l~ 409 (447)
T KOG4497|consen 357 VLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPKKGFNIQKLQ 409 (447)
T ss_pred hhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCCCCceeeeEE
Confidence 5557778999999998 666655555679999876655555444444455555
No 225
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.94 E-value=6.8e-08 Score=113.24 Aligned_cols=245 Identities=15% Similarity=0.075 Sum_probs=156.4
Q ss_pred eeeecCccceeEEEeec----ceEeecCCCccEecccCCC-----CceeEEecC-CccCCEEEEEEcCCCCeEEeecCCC
Q 006825 333 EMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSG-----GGMKSKKKG-SWFKSIRTVASSVTGHKERRSSDER 402 (630)
Q Consensus 333 ~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~t-----G~~~~~lk~-gH~~~V~sVAfSpdG~~lasgS~D~ 402 (630)
..|..|+..|..++-++ +++|||.|+||| +|+... +.....+.. --..++.+|.+-+.|..+|-++.|+
T Consensus 1042 AhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVK-vW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG 1120 (1431)
T KOG1240|consen 1042 AHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVK-VWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDG 1120 (1431)
T ss_pred ehhhhccccccceeecCCCCceEEEecCCceEE-EeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCC
Confidence 67788999999999876 799999999999 999753 222333331 2356788999999999999998887
Q ss_pred -------CC---c----------cccCCcceEEEeecCCC----eEEEecCCcEEEEEeCCCCcccceeeeeE--ecccC
Q 006825 403 -------DT---S----------SEKGGRRSSSATDDSQD----VSFHGQERVRVRQYGKSCKDLTALYKCQE--IQAHN 456 (630)
Q Consensus 403 -------dt---~----------s~~gh~~~Vsa~~~s~d----~l~Sgs~Dg~VriWd~~~~el~~~~~v~t--L~gHt 456 (630)
+. . ..+.....|..-++... +++-+..-+.|..||.....- ..+ ..-..
T Consensus 1121 ~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~-----~w~lk~~~~h 1195 (1431)
T KOG1240|consen 1121 SVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHD-----AWRLKNQLRH 1195 (1431)
T ss_pred eEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhh-----HHhhhcCccc
Confidence 11 0 02222224444444332 467777888899999865421 122 23345
Q ss_pred cCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCC---CCEEEEeeC--CCeeeeec
Q 006825 457 GSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE---PTSLSPKHL--DNHLEKKR 531 (630)
Q Consensus 457 ~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpd---g~~lasgs~--Dg~I~i~~ 531 (630)
+.|++++.+|.+.+|++|..-|.+-+||++=+..+... ..++..++..+..+|- ....++++. .+.|.+|+
T Consensus 1196 G~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw----~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn 1271 (1431)
T KOG1240|consen 1196 GLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSW----EHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWN 1271 (1431)
T ss_pred cceeEEEecCCceEEEEecCCceEEEEEeecCceeecc----cCcccCCcceEEeeccCCCCceEEEecccCCCceeeee
Confidence 89999999999999999999999999999866665553 2344466766666654 244444433 45565665
Q ss_pred ccccccccccccCccccccEEEeCCCCceEEec--------cCCC-CEEEEEEcCCCeEEEEECCCcEEEEeCCCC
Q 006825 532 RGRSINRKSLSLDHMVVPETVFALSDKPICSFQ--------GHLD-DVLDLSWSKSQHLLSSSMDKTVRLWHLSSK 598 (630)
Q Consensus 532 ~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~--------GHs~-~V~sLafSPd~~LaSgS~DgtVrIWDl~tg 598 (630)
...+.-.. .+|..++.+..... .+.- .+.+.--.+++++++|+.|..||.||...-
T Consensus 1272 ~~~g~~~~-----------vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1272 METGLRQT-----------VLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred cccCcceE-----------EEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 54421111 23332222221111 1111 122322234489999999999999998653
No 226
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.93 E-value=5.2e-08 Score=100.65 Aligned_cols=217 Identities=10% Similarity=-0.026 Sum_probs=154.9
Q ss_pred cceeEEEeec---ceEeecCCCccEecccCCCC---ceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcce
Q 006825 340 PIVQELMRRQ---NVEEGNKDSFDLNNNGSSGG---GMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRS 413 (630)
Q Consensus 340 ~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG---~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~ 413 (630)
..|++.||.+ .+|.+-.-.-+. |+..... +..++++ .|...|..|.|+|.+.+|++++.|
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evh-iy~~~~~~~w~~~htls-~Hd~~vtgvdWap~snrIvtcs~d------------ 76 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVH-IYSMLGADLWEPAHTLS-EHDKIVTGVDWAPKSNRIVTCSHD------------ 76 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEE-EEEecCCCCceeceehh-hhCcceeEEeecCCCCceeEccCC------------
Confidence 5678888877 566666666666 7765443 4677888 899999999999988777665544
Q ss_pred EEEeecCCCeEEEecCCcEEEEEeC-CCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceee
Q 006825 414 SSATDDSQDVSFHGQERVRVRQYGK-SCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKG 492 (630)
Q Consensus 414 Vsa~~~s~d~l~Sgs~Dg~VriWd~-~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~ 492 (630)
...++|.. ..++ ....-.|..|..++++|.|+|.+++||+||.-+.|-||=++....-.
T Consensus 77 -----------------rnayVw~~~~~~~---WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWW 136 (361)
T KOG1523|consen 77 -----------------RNAYVWTQPSGGT---WKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWW 136 (361)
T ss_pred -----------------CCccccccCCCCe---eccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEeccccee
Confidence 44677765 2222 22345677899999999999999999999999999999886543321
Q ss_pred eeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccc-cccccccccCccccccEEEeC---CCCceEEeccCCC
Q 006825 493 ELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGR-SINRKSLSLDHMVVPETVFAL---SDKPICSFQGHLD 568 (630)
Q Consensus 493 ~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~-~~~~~s~s~d~~i~~~~Vwdl---sgk~l~tL~GHs~ 568 (630)
. -......+...|.++.|+|.+-+++.|+.|+..++...-- ... ... ...-|.- -|+++.++....+
T Consensus 137 V-sKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vd-------ekp-ap~pWgsk~PFG~lm~E~~~~gg 207 (361)
T KOG1523|consen 137 V-SKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVD-------EKP-APTPWGSKMPFGQLMSEASSSGG 207 (361)
T ss_pred h-hhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccc-------cCC-CCCCCccCCcHHHHHHhhccCCC
Confidence 1 0111345667899999999999999999999886543210 000 000 0022332 2455566666778
Q ss_pred CEEEEEEcCC-CeEEEEECCCcEEEEeCCCCc
Q 006825 569 DVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKT 599 (630)
Q Consensus 569 ~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~ 599 (630)
.|..+.|+|+ ..|+-.+.|.+|.+=|.....
T Consensus 208 wvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 208 WVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred ceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 9999999999 999999999999999987653
No 227
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=98.92 E-value=1.1e-08 Score=107.57 Aligned_cols=170 Identities=10% Similarity=0.091 Sum_probs=123.9
Q ss_pred eEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccce-eeee
Q 006825 372 KSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTAL-YKCQ 450 (630)
Q Consensus 372 ~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~-~~v~ 450 (630)
++-+. +|.+.|+++-||.+|++|++| +.|..+++|.+..--.... ..++
T Consensus 49 qKD~~-~H~GCiNAlqFS~N~~~L~SG-----------------------------GDD~~~~~W~~de~~~~k~~KPI~ 98 (609)
T KOG4227|consen 49 QKDVR-EHTGCINALQFSHNDRFLASG-----------------------------GDDMHGRVWNVDELMVRKTPKPIG 98 (609)
T ss_pred hhhhh-hhccccceeeeccCCeEEeec-----------------------------CCcceeeeechHHHHhhcCCCCce
Confidence 34445 899999999999988888655 5556799998742211111 1233
Q ss_pred Eec-ccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeee
Q 006825 451 EIQ-AHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529 (630)
Q Consensus 451 tL~-gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i 529 (630)
... .|...|.|++|....++|.+|+.+++|.+-|+++.+.+..+ ......+.|+.+..+|-..++++.+.++.|
T Consensus 99 ~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~---~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V-- 173 (609)
T KOG4227|consen 99 VMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVA---NENNNRGDVYHMDQHPTDNTLIVVTRAKLV-- 173 (609)
T ss_pred eccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeee---cccCcccceeecccCCCCceEEEEecCceE--
Confidence 332 24478999999999999999999999999999988876653 123334589999999999999999999999
Q ss_pred ecccccccccccccCccccccEEEeCCCCc----eEEeccCCCCEEEEEEcCC--CeEEEEECCCcEEEEeCCC
Q 006825 530 KRRGRSINRKSLSLDHMVVPETVFALSDKP----ICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSS 597 (630)
Q Consensus 530 ~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~----l~tL~GHs~~V~sLafSPd--~~LaSgS~DgtVrIWDl~t 597 (630)
.+|+....+ +.-+.......+.+-|+|- .+|++.+.-+-+.|||.+.
T Consensus 174 ---------------------~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~ 226 (609)
T KOG4227|consen 174 ---------------------SFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRM 226 (609)
T ss_pred ---------------------EEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeecc
Confidence 566652211 1112233445678899997 8889999999999999753
No 228
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.91 E-value=1.3e-08 Score=102.79 Aligned_cols=146 Identities=17% Similarity=0.139 Sum_probs=105.6
Q ss_pred ceEeecCCCccEecccCCCCceeEEec---------CCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecC
Q 006825 350 NVEEGNKDSFDLNNNGSSGGGMKSKKK---------GSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDS 420 (630)
Q Consensus 350 ~laSgS~D~tvr~vWD~~tG~~~~~lk---------~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s 420 (630)
.|+.|-.++.+- +||+.++..+..++ ..|...|.+|.|.+.
T Consensus 167 lllaGyEsghvv-~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~----------------------------- 216 (323)
T KOG0322|consen 167 LLLAGYESGHVV-IWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASS----------------------------- 216 (323)
T ss_pred EEEEeccCCeEE-EEEccCCceeeccccccccccchhhccCcceeeeechh-----------------------------
Confidence 578888889998 99999985544443 145555555544431
Q ss_pred CCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeeccccc
Q 006825 421 QDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQED 500 (630)
Q Consensus 421 ~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~ 500 (630)
.+.-++|+.+.++..|.+.... ..+....++.--.-.|..+.+-||++.|||+|+|+.||||..++...+..| .
T Consensus 217 ~~rGisgga~dkl~~~Sl~~s~-gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVL-----k 290 (323)
T KOG0322|consen 217 CDRGISGGADDKLVMYSLNHST-GSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVL-----K 290 (323)
T ss_pred hcCCcCCCccccceeeeecccc-CcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhh-----h
Confidence 1123566667777777764321 111111222223345889999999999999999999999999999888774 8
Q ss_pred CcccceEEEEECCCCCEEEEeeCCCeeeeec
Q 006825 501 GHLNMLLLANGSPEPTSLSPKHLDNHLEKKR 531 (630)
Q Consensus 501 gh~~~V~svafSpdg~~lasgs~Dg~I~i~~ 531 (630)
.|...|.+++|+|+..++|.++.|+.|.+|+
T Consensus 291 yHsagvn~vAfspd~~lmAaaskD~rISLWk 321 (323)
T KOG0322|consen 291 YHSAGVNAVAFSPDCELMAAASKDARISLWK 321 (323)
T ss_pred hhhcceeEEEeCCCCchhhhccCCceEEeee
Confidence 8999999999999999999999999995553
No 229
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.88 E-value=2e-08 Score=109.30 Aligned_cols=169 Identities=14% Similarity=0.178 Sum_probs=119.5
Q ss_pred EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccC-CCEEEEEeCCCcEEEEECcCC--------------
Q 006825 424 SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLD-GRYLASAGEDCVIHVWQVVES-------------- 488 (630)
Q Consensus 424 l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpD-G~~LASgS~DgtIrVWDl~tg-------------- 488 (630)
+..|-..+.|.+.+....+...++.- ...--+..|+||.|-|. ..+++.+-.+|.+.++|..--
T Consensus 188 llIGf~tGqvq~idp~~~~~sklfne-~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~ 266 (636)
T KOG2394|consen 188 LLIGFTTGQVQLIDPINFEVSKLFNE-ERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDG 266 (636)
T ss_pred eEEeeccCceEEecchhhHHHHhhhh-cccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCC
Confidence 44555566677776554443332211 11113478999999993 445566678999999976311
Q ss_pred ceeeeeeccc---------ccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCC
Q 006825 489 ERKGELLEKQ---------EDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDK 558 (630)
Q Consensus 489 ~~~~~l~~~~---------~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk 558 (630)
.....+.... +.--...|...+|+|||++||+.+.|+.+ +||+. +.+
T Consensus 267 ~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfL-----------------------RvF~fdt~e 323 (636)
T KOG2394|consen 267 DQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFL-----------------------RIFDFDTQE 323 (636)
T ss_pred CeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceE-----------------------EEeeccHHH
Confidence 1001100000 00112356788999999999999999999 88888 556
Q ss_pred ceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cC
Q 006825 559 PICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DR 616 (630)
Q Consensus 559 ~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~ 616 (630)
++..++.--+..+||+|||| +||++|+.|--|.||.+..++.+..=. |.++|..|+ +|
T Consensus 324 Llg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 324 LLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred HHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 66666666678999999999 999999999999999999999888776 999999999 65
No 230
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.88 E-value=3.5e-07 Score=100.76 Aligned_cols=203 Identities=14% Similarity=0.009 Sum_probs=122.2
Q ss_pred cEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCC
Q 006825 360 DLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKS 439 (630)
Q Consensus 360 vr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~ 439 (630)
+. ++|...+. .+.+. .|...+...+|||||++|+..+.+ .....|++|++.
T Consensus 181 l~-~~d~~g~~-~~~l~-~~~~~~~~p~wSpDG~~la~~s~~--------------------------~~~~~l~~~~l~ 231 (430)
T PRK00178 181 LQ-RSDYDGAR-AVTLL-QSREPILSPRWSPDGKRIAYVSFE--------------------------QKRPRIFVQNLD 231 (430)
T ss_pred EE-EECCCCCC-ceEEe-cCCCceeeeeECCCCCEEEEEEcC--------------------------CCCCEEEEEECC
Confidence 44 66776444 45555 567789999999999988743322 112468899987
Q ss_pred CCcccceeeeeEecccCcCEEEEEEccCCCEEE-EEeCCC--cEEEEECcCCceeeeeecccccCcccceEEEEECCCCC
Q 006825 440 CKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLA-SAGEDC--VIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPT 516 (630)
Q Consensus 440 ~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LA-SgS~Dg--tIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~ 516 (630)
+++. +.+....+.+...+|+|||++|+ +...++ .|.+||+.++... .+ ..+........|+|||+
T Consensus 232 ~g~~------~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~l-----t~~~~~~~~~~~spDg~ 299 (430)
T PRK00178 232 TGRR------EQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RV-----TNHPAIDTEPFWGKDGR 299 (430)
T ss_pred CCCE------EEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-Ec-----ccCCCCcCCeEECCCCC
Confidence 7643 22333344556789999999877 555555 5888899877643 22 23334455678999999
Q ss_pred EEEEeeCC-CeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECC-C--cEE
Q 006825 517 SLSPKHLD-NHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMD-K--TVR 591 (630)
Q Consensus 517 ~lasgs~D-g~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~D-g--tVr 591 (630)
.++..+.. +...+ .++++.+..+..+...........|+|+ ++|+..+.+ + .|.
T Consensus 300 ~i~f~s~~~g~~~i---------------------y~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~ 358 (430)
T PRK00178 300 TLYFTSDRGGKPQI---------------------YKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVA 358 (430)
T ss_pred EEEEEECCCCCceE---------------------EEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEE
Confidence 88766532 22211 3445532223333212223345789999 777766543 3 588
Q ss_pred EEeCCCCcEEEEEecCCceEEEE-cCCCcEEEEec
Q 006825 592 LWHLSSKTCLKIFSHSDYDISLV-DRLMLRFAYGA 625 (630)
Q Consensus 592 IWDl~tg~~l~t~~H~~~V~sVa-s~~~~~lAsgs 625 (630)
+||+.+++.. .+.+........ +|++..+++..
T Consensus 359 ~~dl~tg~~~-~lt~~~~~~~p~~spdg~~i~~~~ 392 (430)
T PRK00178 359 AQDLQRGSVR-ILTDTSLDESPSVAPNGTMLIYAT 392 (430)
T ss_pred EEECCCCCEE-EccCCCCCCCceECCCCCEEEEEE
Confidence 8999888643 333221212233 66777766653
No 231
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.87 E-value=7.3e-08 Score=105.65 Aligned_cols=145 Identities=14% Similarity=0.182 Sum_probs=104.9
Q ss_pred EEEecCCcEEEEEeCCCCcccc-eeeeeEecccCcC-----EEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecc
Q 006825 424 SFHGQERVRVRQYGKSCKDLTA-LYKCQEIQAHNGS-----IWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEK 497 (630)
Q Consensus 424 l~Sgs~Dg~VriWd~~~~el~~-~~~v~tL~gHt~~-----V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~ 497 (630)
++.|..+|.|-.||..++.... +.....+..|.+. |+++.|+.+|-.++.|...|.|.|+|+++.+++..-
T Consensus 190 la~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~k--- 266 (703)
T KOG2321|consen 190 LACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVK--- 266 (703)
T ss_pred EEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeec---
Confidence 6778889999999998775321 1122233445554 999999999999999999999999999988766541
Q ss_pred cccCcccceEEEEECCC--CCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEE
Q 006825 498 QEDGHLNMLLLANGSPE--PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLS 574 (630)
Q Consensus 498 ~~~gh~~~V~svafSpd--g~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLa 574 (630)
..+..-+|..+.|.+. +..+++. ....+ +||+. +|++...++ .+..|+.++
T Consensus 267 -dh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~-----------------------kiWd~~~Gk~~asiE-pt~~lND~C 320 (703)
T KOG2321|consen 267 -DHGYELPIKKLDWQDTDQQNKVVSM-DKRIL-----------------------KIWDECTGKPMASIE-PTSDLNDFC 320 (703)
T ss_pred -ccCCccceeeecccccCCCceEEec-chHHh-----------------------hhcccccCCceeecc-ccCCcCcee
Confidence 2333456777777655 3333332 22333 88987 888887776 445599999
Q ss_pred EcCC-CeEEEEECCCcEEEEeCCC
Q 006825 575 WSKS-QHLLSSSMDKTVRLWHLSS 597 (630)
Q Consensus 575 fSPd-~~LaSgS~DgtVrIWDl~t 597 (630)
+-|+ ++++++-.+..+..+=+..
T Consensus 321 ~~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 321 FVPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred eecCCceEEEecCCCcceeEEccc
Confidence 9999 9999999888887765543
No 232
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.87 E-value=1.6e-08 Score=108.93 Aligned_cols=257 Identities=14% Similarity=0.113 Sum_probs=173.2
Q ss_pred CceeEEEEcCCCceEeeecceeeecCccceeEEEeec-----ceEeecCCCccEeccc-CCCCcee-EEecCCccCCEEE
Q 006825 313 GTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ-----NVEEGNKDSFDLNNNG-SSGGGMK-SKKKGSWFKSIRT 385 (630)
Q Consensus 313 g~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~-----~laSgS~D~tvr~vWD-~~tG~~~-~~lk~gH~~~V~s 385 (630)
-...++||=.+++++ +.-..||-.-|-+.-|-| .+++.+.|+.+| +-- ..+|.+. .+....|.+.|.-
T Consensus 163 D~~vv~WdW~~~~~~----l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr-~s~i~~t~~~e~t~rl~~h~g~vhk 237 (559)
T KOG1334|consen 163 DLQVVVWDWVSGSPK----LSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR-VSEILETGYVENTKRLAPHEGPVHK 237 (559)
T ss_pred cceEEeehhhccCcc----cccccccccchhhhhccCCCCCcCceeccccCcee-eeeeccccceecceecccccCccce
Confidence 344556776666665 122357887777766877 699999999999 543 4566655 3333479999999
Q ss_pred EEEcCCCC-eEEeecCCC-----CCcc---------ccCCcc---eEEEeecCCC---eEEEecCCcEEEEEeCCCCccc
Q 006825 386 VASSVTGH-KERRSSDER-----DTSS---------EKGGRR---SSSATDDSQD---VSFHGQERVRVRQYGKSCKDLT 444 (630)
Q Consensus 386 VAfSpdG~-~lasgS~D~-----dt~s---------~~gh~~---~Vsa~~~s~d---~l~Sgs~Dg~VriWd~~~~el~ 444 (630)
+|.-|+.. .+.+.+.|. +... .+.+.. ....++..+. .++.|+.|--+|+||...-...
T Consensus 238 lav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e 317 (559)
T KOG1334|consen 238 LAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKE 317 (559)
T ss_pred eeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhc
Confidence 99999765 466777666 1111 112222 2233333332 3788999999999987532211
Q ss_pred ------ceeeeeEecc-cCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCce--------eeeeecccccCccc--ceE
Q 006825 445 ------ALYKCQEIQA-HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESER--------KGELLEKQEDGHLN--MLL 507 (630)
Q Consensus 445 ------~~~~v~tL~g-Ht~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~--------~~~l~~~~~~gh~~--~V~ 507 (630)
..++.+.|.. ..-.|++++|+.++.-|.++-.|--|.++.-.-+.- ...+....+.||.+ .|.
T Consensus 318 ~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVK 397 (559)
T KOG1334|consen 318 ENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVK 397 (559)
T ss_pred cccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccc
Confidence 2223333333 223589999998877676677788899995432211 01222222578854 366
Q ss_pred EEEE-CCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEE
Q 006825 508 LANG-SPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSS 584 (630)
Q Consensus 508 svaf-Spdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSg 584 (630)
.+.| -|...++++|++-|.| .||+- +++.|+-++|-..-|+||.-+|- -.|||+
T Consensus 398 gVNFfGPrsEyVvSGSDCGhI-----------------------FiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsS 454 (559)
T KOG1334|consen 398 GVNFFGPRSEYVVSGSDCGHI-----------------------FIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASS 454 (559)
T ss_pred eeeeccCccceEEecCccceE-----------------------EEEecchhHHHHHhhcccceEeccCCCCCCchhhcc
Confidence 7776 5778999999999999 77776 67888888887779999999998 999999
Q ss_pred ECCCcEEEEeCCC
Q 006825 585 SMDKTVRLWHLSS 597 (630)
Q Consensus 585 S~DgtVrIWDl~t 597 (630)
+.|.-||||-..+
T Consensus 455 Gid~DVKIWTP~~ 467 (559)
T KOG1334|consen 455 GIDHDVKIWTPLT 467 (559)
T ss_pred CCccceeeecCCc
Confidence 9999999998744
No 233
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.83 E-value=3.4e-08 Score=104.60 Aligned_cols=122 Identities=25% Similarity=0.252 Sum_probs=94.7
Q ss_pred CcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccccc
Q 006825 456 NGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRS 535 (630)
Q Consensus 456 t~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~ 535 (630)
..+|..+.++......-.++....+.+|.+..+.+... .||...+..|+++||+++|+++-.|.+|++....
T Consensus 110 ~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~------lGhvSml~dVavS~D~~~IitaDRDEkIRvs~yp-- 181 (390)
T KOG3914|consen 110 PTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPI------LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYP-- 181 (390)
T ss_pred cceeeeeeccceEEEEeecCCceeeeeecccccCcchh------hhhhhhhheeeecCCCCEEEEecCCceEEEEecC--
Confidence 34555666655555555677888888998877554443 6999999999999999999999999999543222
Q ss_pred ccccccccCccccccEEEeCCCCceEE-eccCCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825 536 INRKSLSLDHMVVPETVFALSDKPICS-FQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS 605 (630)
Q Consensus 536 ~~~~s~s~d~~i~~~~Vwdlsgk~l~t-L~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~l~t~~ 605 (630)
.--.+.. +.||+.-|..++.-++..|+|||.|++|++||+.+|+++.++.
T Consensus 182 --------------------a~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 182 --------------------ATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred --------------------cccchhhhccccHhheeeeeeccCceeeecCCCCcEEEEecccCCcccccc
Confidence 1122222 3589999999999988889999999999999999999998775
No 234
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.82 E-value=1.5e-06 Score=95.91 Aligned_cols=215 Identities=10% Similarity=-0.031 Sum_probs=127.9
Q ss_pred eeeecCccceeEEEeec---ceEeecCC---CccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCcc
Q 006825 333 EMCVGHSPIVQELMRRQ---NVEEGNKD---SFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSS 406 (630)
Q Consensus 333 ~~l~GHs~~V~~Lafs~---~laSgS~D---~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s 406 (630)
..+..|...+....|+| .|+-.+.+ ..+. +|++.+|+... +. ...+.+...+|+|||++++-....
T Consensus 192 ~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~-~~~l~~g~~~~-l~-~~~g~~~~~~~SpDG~~la~~~~~----- 263 (430)
T PRK00178 192 VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIF-VQNLDTGRREQ-IT-NFEGLNGAPAWSPDGSKLAFVLSK----- 263 (430)
T ss_pred eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEE-EEECCCCCEEE-cc-CCCCCcCCeEECCCCCEEEEEEcc-----
Confidence 34455666788888888 45554433 3466 78998887544 22 233445578999999988632111
Q ss_pred ccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeC-CC--cEEEE
Q 006825 407 EKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE-DC--VIHVW 483 (630)
Q Consensus 407 ~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~-Dg--tIrVW 483 (630)
.....|++||..+++. ..+..+...+....|+|||+.|+..+. ++ .|.+|
T Consensus 264 ---------------------~g~~~Iy~~d~~~~~~------~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~ 316 (430)
T PRK00178 264 ---------------------DGNPEIYVMDLASRQL------SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKV 316 (430)
T ss_pred ---------------------CCCceEEEEECCCCCe------EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEE
Confidence 1123688899887643 345566666778899999998776653 33 57777
Q ss_pred ECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCC-eeeeecccccccccccccCccccccEEEeCCCCceEE
Q 006825 484 QVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN-HLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICS 562 (630)
Q Consensus 484 Dl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg-~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~t 562 (630)
++.+++..... ..+ .......|+|+|+.++...... ...+ .++++.+.....
T Consensus 317 d~~~g~~~~lt----~~~--~~~~~~~~Spdg~~i~~~~~~~~~~~l---------------------~~~dl~tg~~~~ 369 (430)
T PRK00178 317 NVNGGRAERVT----FVG--NYNARPRLSADGKTLVMVHRQDGNFHV---------------------AAQDLQRGSVRI 369 (430)
T ss_pred ECCCCCEEEee----cCC--CCccceEECCCCCEEEEEEccCCceEE---------------------EEEECCCCCEEE
Confidence 88777643321 112 2233578999999988775432 1100 456664333344
Q ss_pred eccCCCCEEEEEEcCC-CeEEEEECC-C--cEEEEeCCCCcEEEEEe-cCCceE
Q 006825 563 FQGHLDDVLDLSWSKS-QHLLSSSMD-K--TVRLWHLSSKTCLKIFS-HSDYDI 611 (630)
Q Consensus 563 L~GHs~~V~sLafSPd-~~LaSgS~D-g--tVrIWDl~tg~~l~t~~-H~~~V~ 611 (630)
+. +........|+|+ ++|+..+.+ + .|.++++. |...+.+. +.+.+.
T Consensus 370 lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~ 421 (430)
T PRK00178 370 LT-DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQGEVR 421 (430)
T ss_pred cc-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcC
Confidence 43 2222335689999 777665543 3 46666764 44444444 334443
No 235
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.81 E-value=4.6e-08 Score=101.27 Aligned_cols=212 Identities=16% Similarity=0.080 Sum_probs=134.4
Q ss_pred EEEcCCCCeEEeecCCC----CCccccCCc--------ceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEec
Q 006825 386 VASSVTGHKERRSSDER----DTSSEKGGR--------RSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQ 453 (630)
Q Consensus 386 VAfSpdG~~lasgS~D~----dt~s~~gh~--------~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~ 453 (630)
+.|||+|+++|+.++-+ ++.++.-|+ .-+--.+++--.+.....+++|.+|++...+. ...+.
T Consensus 14 c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew-----~ckId 88 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRYRLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW-----YCKID 88 (447)
T ss_pred eeECCCCCeeeeeeeeEEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeeccee-----EEEec
Confidence 68999999999988765 433322221 11222234444477788899999999876653 23466
Q ss_pred ccCcCEEEEEEccCCC-EEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeee---e
Q 006825 454 AHNGSIWSIKFSLDGR-YLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLE---K 529 (630)
Q Consensus 454 gHt~~V~sVaFSpDG~-~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~---i 529 (630)
.-...+.++.|||||+ +|.+...|-.|.||.+.+...... .-....+..++|+|||++.+.++.-.... +
T Consensus 89 eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~------~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i 162 (447)
T KOG4497|consen 89 EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL------PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQI 162 (447)
T ss_pred cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe------cccccCceeEEECCCCceeeeeecccHHHHHHH
Confidence 6778899999999995 666778899999999988765433 22334568899999999988876443211 1
Q ss_pred ecccccccccccccCccccccEEEeCCCCceEEe---------ccCC-CCEEEEEEcCC-CeEEEEECCCcEEEEeCCCC
Q 006825 530 KRRGRSINRKSLSLDHMVVPETVFALSDKPICSF---------QGHL-DDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK 598 (630)
Q Consensus 530 ~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL---------~GHs-~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg 598 (630)
......+..+.+..+..-....-|...|.-+... .-|. -.|..++|+|. ++|+.|+.|+.+||-+--+-
T Consensus 163 ~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tW 242 (447)
T KOG4497|consen 163 SSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTW 242 (447)
T ss_pred HhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeee
Confidence 1111112222333332222223333333322221 1122 45889999997 99999999999999887776
Q ss_pred cEEEEEecCC
Q 006825 599 TCLKIFSHSD 608 (630)
Q Consensus 599 ~~l~t~~H~~ 608 (630)
+....|-|-.
T Consensus 243 k~f~eflhl~ 252 (447)
T KOG4497|consen 243 KPFGEFLHLC 252 (447)
T ss_pred eehhhhccch
Confidence 6665555443
No 236
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.81 E-value=3.2e-07 Score=94.01 Aligned_cols=160 Identities=16% Similarity=0.129 Sum_probs=110.3
Q ss_pred ccCCcceEEEeecC---CCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc-CCCEEEEEeCCCcEEE
Q 006825 407 EKGGRRSSSATDDS---QDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHV 482 (630)
Q Consensus 407 ~~gh~~~Vsa~~~s---~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp-DG~~LASgS~DgtIrV 482 (630)
.+.|...+....|+ ++.+++|+.|+.+..||.+... .+.-+..+-|+..|.+|.-+| .+.+|+||+.|-.|++
T Consensus 161 wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~---~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~ 237 (339)
T KOG0280|consen 161 WKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK---TFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRV 237 (339)
T ss_pred ccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc---ceeeecceeeecceEEEecCCCCCceEEEeccccceee
Confidence 45566555555554 4558999999999999997332 223344677999999999987 7889999999999999
Q ss_pred EECcC-CceeeeeecccccCcccceEEEEECCC--CCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC---C
Q 006825 483 WQVVE-SERKGELLEKQEDGHLNMLLLANGSPE--PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL---S 556 (630)
Q Consensus 483 WDl~t-g~~~~~l~~~~~~gh~~~V~svafSpd--g~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl---s 556 (630)
||.+. ++++.. ....+.|+.+..+|. +++++++-..|. +|-+. .
T Consensus 238 ~DtRnm~kPl~~------~~v~GGVWRi~~~p~~~~~lL~~CMh~G~------------------------ki~~~~~~~ 287 (339)
T KOG0280|consen 238 LDTRNMGKPLFK------AKVGGGVWRIKHHPEIFHRLLAACMHNGA------------------------KILDSSDKV 287 (339)
T ss_pred eehhcccCcccc------CccccceEEEEecchhhhHHHHHHHhcCc------------------------eEEEecccc
Confidence 99974 333333 333488999999986 445555544442 22222 1
Q ss_pred CC---ceEEeccCCCCEEEEEEcCC-CeEEEEEC-CCcEE-EEeCCCCc
Q 006825 557 DK---PICSFQGHLDDVLDLSWSKS-QHLLSSSM-DKTVR-LWHLSSKT 599 (630)
Q Consensus 557 gk---~l~tL~GHs~~V~sLafSPd-~~LaSgS~-DgtVr-IWDl~tg~ 599 (630)
.+ .+..++.|.+-+..-.|... .+|+|++. |+.|+ +|-.-++.
T Consensus 288 ~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 288 LEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGE 336 (339)
T ss_pred cchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccCC
Confidence 22 34456778887888888444 78999874 88866 88766654
No 237
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.80 E-value=1.5e-06 Score=96.92 Aligned_cols=215 Identities=11% Similarity=-0.033 Sum_probs=123.6
Q ss_pred eecCccceeEEEeec---ceEeecCC---CccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCcccc
Q 006825 335 CVGHSPIVQELMRRQ---NVEEGNKD---SFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEK 408 (630)
Q Consensus 335 l~GHs~~V~~Lafs~---~laSgS~D---~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~ 408 (630)
+..+...+....|+| .|+-.+.+ ..+. +||+.+|+.... . .........+|+|||+.|+.....
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~-~~dl~tg~~~~l-t-~~~g~~~~~~wSPDG~~La~~~~~------- 282 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIF-VQDIYTQVREKV-T-SFPGINGAPRFSPDGKKLALVLSK------- 282 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEE-EEECCCCCeEEe-c-CCCCCcCCeeECCCCCEEEEEEeC-------
Confidence 344555677788888 45444332 2466 789888875332 2 122233468999999987632111
Q ss_pred CCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeC-CC--cEEEEEC
Q 006825 409 GGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE-DC--VIHVWQV 485 (630)
Q Consensus 409 gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~-Dg--tIrVWDl 485 (630)
.....|++|+..+++. ..+..|...+...+|+|||++|+..+. ++ .|.++|+
T Consensus 283 -------------------~g~~~Iy~~dl~tg~~------~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl 337 (448)
T PRK04792 283 -------------------DGQPEIYVVDIATKAL------TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNL 337 (448)
T ss_pred -------------------CCCeEEEEEECCCCCe------EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEEC
Confidence 1123588888877643 345556667788999999998876553 34 4666677
Q ss_pred cCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCC-eeeeecccccccccccccCccccccEEEeCCCCceEEec
Q 006825 486 VESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN-HLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ 564 (630)
Q Consensus 486 ~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg-~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~ 564 (630)
.+++... +. +.++ .....+|+|||++|+..+.+. ...+ .++++.+..+..+.
T Consensus 338 ~~g~~~~-Lt---~~g~--~~~~~~~SpDG~~l~~~~~~~g~~~I---------------------~~~dl~~g~~~~lt 390 (448)
T PRK04792 338 ASGKVSR-LT---FEGE--QNLGGSITPDGRSMIMVNRTNGKFNI---------------------ARQDLETGAMQVLT 390 (448)
T ss_pred CCCCEEE-Ee---cCCC--CCcCeeECCCCCEEEEEEecCCceEE---------------------EEEECCCCCeEEcc
Confidence 7665432 21 1222 223568999999988765432 2211 33444333333333
Q ss_pred cCCCCEEEEEEcCC-CeEEEEEC-CCc--EEEEeCCCCcEEEEEe-cCCceEEE
Q 006825 565 GHLDDVLDLSWSKS-QHLLSSSM-DKT--VRLWHLSSKTCLKIFS-HSDYDISL 613 (630)
Q Consensus 565 GHs~~V~sLafSPd-~~LaSgS~-Dgt--VrIWDl~tg~~l~t~~-H~~~V~sV 613 (630)
... ......|+|+ ++|+..+. ++. +.+++. +|...+.+. +.+.+...
T Consensus 391 ~~~-~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p 442 (448)
T PRK04792 391 STR-LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSP 442 (448)
T ss_pred CCC-CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCC
Confidence 221 2234589999 76665544 443 666776 566666665 44444433
No 238
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.79 E-value=4.9e-06 Score=90.58 Aligned_cols=274 Identities=12% Similarity=-0.015 Sum_probs=155.3
Q ss_pred CCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEe
Q 006825 299 DNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKK 375 (630)
Q Consensus 299 ddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~l 375 (630)
+.+..|+|.+.+. |. ..+-|..|.+.+ .++......--.++|+| ++...+.|+.+. ++|+.+++.+.++
T Consensus 3 ~~~~l~~V~~~~~-~~-v~viD~~t~~~~-----~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vs-viD~~~~~~v~~i 74 (369)
T PF02239_consen 3 DTGNLFYVVERGS-GS-VAVIDGATNKVV-----ARIPTGGAPHAGLKFSPDGRYLYVANRDGTVS-VIDLATGKVVATI 74 (369)
T ss_dssp -GGGEEEEEEGGG-TE-EEEEETTT-SEE-----EEEE-STTEEEEEE-TT-SSEEEEEETTSEEE-EEETTSSSEEEEE
T ss_pred CCccEEEEEecCC-CE-EEEEECCCCeEE-----EEEcCCCCceeEEEecCCCCEEEEEcCCCeEE-EEECCcccEEEEE
Confidence 3455676665433 22 457788888888 55554333344577887 566667899999 9999999999988
Q ss_pred cCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecc-
Q 006825 376 KGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQA- 454 (630)
Q Consensus 376 k~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~g- 454 (630)
+.|- .-+.+++|+||++++. +....+.+.++|.++.+. ++++..
T Consensus 75 ~~G~--~~~~i~~s~DG~~~~v----------------------------~n~~~~~v~v~D~~tle~-----v~~I~~~ 119 (369)
T PF02239_consen 75 KVGG--NPRGIAVSPDGKYVYV----------------------------ANYEPGTVSVIDAETLEP-----VKTIPTG 119 (369)
T ss_dssp E-SS--EEEEEEE--TTTEEEE----------------------------EEEETTEEEEEETTT--E-----EEEEE--
T ss_pred ecCC--CcceEEEcCCCCEEEE----------------------------EecCCCceeEeccccccc-----eeecccc
Confidence 8443 4578999999998863 344567899999877653 333332
Q ss_pred ------cCcCEEEEEEccCCCEEEEEeCC-CcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEe-eCCCe
Q 006825 455 ------HNGSIWSIKFSLDGRYLASAGED-CVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPK-HLDNH 526 (630)
Q Consensus 455 ------Ht~~V~sVaFSpDG~~LASgS~D-gtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasg-s~Dg~ 526 (630)
....+.+|..+|....++..-.| +.|.+-|..+...+..- ............|+|++++++.+ .....
T Consensus 120 ~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~----~i~~g~~~~D~~~dpdgry~~va~~~sn~ 195 (369)
T PF02239_consen 120 GMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVT----TIKVGRFPHDGGFDPDGRYFLVAANGSNK 195 (369)
T ss_dssp EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEE----EEE--TTEEEEEE-TTSSEEEEEEGGGTE
T ss_pred cccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccccee----eecccccccccccCcccceeeecccccce
Confidence 34568899999988866666655 66666676655433221 12223456678999999987765 33344
Q ss_pred eeeecccccccccccccCcc---------c--c---------------------ccEEEeC-CCCceEEeccCCCCEEEE
Q 006825 527 LEKKRRGRSINRKSLSLDHM---------V--V---------------------PETVFAL-SDKPICSFQGHLDDVLDL 573 (630)
Q Consensus 527 I~i~~~~~~~~~~s~s~d~~---------i--~---------------------~~~Vwdl-sgk~l~tL~GHs~~V~sL 573 (630)
|.+.+.........+..... . . +..+|+. ..+.++++...... .-+
T Consensus 196 i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi 274 (369)
T PF02239_consen 196 IAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFI 274 (369)
T ss_dssp EEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---E
T ss_pred eEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-cee
Confidence 54444333211111100000 0 0 0122333 34567777766666 777
Q ss_pred EEcCC-CeEEEE----ECCCcEEEEeCCCCcEEEEEe--cCCceEEEE-cCCCcE
Q 006825 574 SWSKS-QHLLSS----SMDKTVRLWHLSSKTCLKIFS--HSDYDISLV-DRLMLR 620 (630)
Q Consensus 574 afSPd-~~LaSg----S~DgtVrIWDl~tg~~l~t~~--H~~~V~sVa-s~~~~~ 620 (630)
.-+|+ .+|... ....+|.|+|..+.+.+.++. -...+..+. ++++..
T Consensus 275 ~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~ 329 (369)
T PF02239_consen 275 KTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKE 329 (369)
T ss_dssp E--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSE
T ss_pred ecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCE
Confidence 88999 888776 456899999999998888876 222355555 554443
No 239
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.75 E-value=7.6e-07 Score=97.86 Aligned_cols=253 Identities=13% Similarity=0.119 Sum_probs=161.9
Q ss_pred ecCccceeEEEeec----ceEeecCCCccEecccCCCCceeEEecCCccC--CEEEEEEcCCCCeEEeecCCCCC--ccc
Q 006825 336 VGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFK--SIRTVASSVTGHKERRSSDERDT--SSE 407 (630)
Q Consensus 336 ~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~--~V~sVAfSpdG~~lasgS~D~dt--~s~ 407 (630)
.+|...-+.+-.+| .+|+|-.-+.|+ ++|+++-..+.. .|+. .|.=.-.+.|-...+-=-.|+.. ...
T Consensus 48 fe~p~ast~ik~s~DGqY~lAtG~YKP~ik-vydlanLSLKFE---RhlDae~V~feiLsDD~SK~v~L~~DR~IefHak 123 (703)
T KOG2321|consen 48 FEMPTASTRIKVSPDGQYLLATGTYKPQIK-VYDLANLSLKFE---RHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK 123 (703)
T ss_pred cCCccccceeEecCCCcEEEEecccCCceE-EEEcccceeeee---ecccccceeEEEeccchhhheEeecCceeeehhh
Confidence 35666666777777 699999999999 999976544432 3433 33333333333333222223211 111
Q ss_pred cC---------CcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCC
Q 006825 408 KG---------GRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDC 478 (630)
Q Consensus 408 ~g---------h~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~Dg 478 (630)
-| ..+.+.--.++.+ ++.++....|.-+++..+.+ +..|.-..+.|++|..++-..+|+.|+.||
T Consensus 124 ~G~hy~~RIP~~GRDm~y~~~scD-ly~~gsg~evYRlNLEqGrf-----L~P~~~~~~~lN~v~in~~hgLla~Gt~~g 197 (703)
T KOG2321|consen 124 YGRHYRTRIPKFGRDMKYHKPSCD-LYLVGSGSEVYRLNLEQGRF-----LNPFETDSGELNVVSINEEHGLLACGTEDG 197 (703)
T ss_pred cCeeeeeecCcCCccccccCCCcc-EEEeecCcceEEEEcccccc-----ccccccccccceeeeecCccceEEecccCc
Confidence 11 0111111122223 44444455566677766643 456666779999999999999999999999
Q ss_pred cEEEEECcCCceeeeeecc-cccCcc-----cceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEE
Q 006825 479 VIHVWQVVESERKGELLEK-QEDGHL-----NMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETV 552 (630)
Q Consensus 479 tIrVWDl~tg~~~~~l~~~-~~~gh~-----~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~V 552 (630)
+|-.||.++...+..+... ....|. ..|+++.|..+|..+++|...|.+ .|
T Consensus 198 ~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v-----------------------~i 254 (703)
T KOG2321|consen 198 VVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSV-----------------------LI 254 (703)
T ss_pred eEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcE-----------------------EE
Confidence 9999999988777665311 112233 348999999999999999999999 77
Q ss_pred EeC-CCCceE-EeccCCCCEEEEEEcCC-CeEEEEECC-CcEEEEeCCCCcEEEEEecCCceEEEE-cCCCcEE
Q 006825 553 FAL-SDKPIC-SFQGHLDDVLDLSWSKS-QHLLSSSMD-KTVRLWHLSSKTCLKIFSHSDYDISLV-DRLMLRF 621 (630)
Q Consensus 553 wdl-sgk~l~-tL~GHs~~V~sLafSPd-~~LaSgS~D-gtVrIWDl~tg~~l~t~~H~~~V~sVa-s~~~~~l 621 (630)
+++ +.+++. .-++..-+|..+.|.+. +.=...++| ..+||||-.+|+....+.....+..++ -|....+
T Consensus 255 yDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~ 328 (703)
T KOG2321|consen 255 YDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMF 328 (703)
T ss_pred EEcccCCceeecccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeeccccCCcCceeeecCCceE
Confidence 887 444443 23445567999999875 332233344 577999999999998888555577777 3333333
No 240
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.75 E-value=2e-07 Score=108.05 Aligned_cols=141 Identities=17% Similarity=0.159 Sum_probs=114.3
Q ss_pred ceEeecCCCccEecccCCCCceeE-EecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEec
Q 006825 350 NVEEGNKDSFDLNNNGSSGGGMKS-KKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQ 428 (630)
Q Consensus 350 ~laSgS~D~tvr~vWD~~tG~~~~-~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs 428 (630)
++++|+-=+.+. +|+.. +..+. .++ ||.+.|-++.++-||.++++.|+|
T Consensus 147 ~i~~gsv~~~ii-vW~~~-~dn~p~~l~-GHeG~iF~i~~s~dg~~i~s~SdD--------------------------- 196 (967)
T KOG0974|consen 147 YIASGSVFGEII-VWKPH-EDNKPIRLK-GHEGSIFSIVTSLDGRYIASVSDD--------------------------- 196 (967)
T ss_pred EEEeccccccEE-EEecc-ccCCcceec-ccCCceEEEEEccCCcEEEEEecC---------------------------
Confidence 788888889999 99987 43333 466 999999999999999998765554
Q ss_pred CCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcc-cceE
Q 006825 429 ERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHL-NMLL 507 (630)
Q Consensus 429 ~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~-~~V~ 507 (630)
.++|+|++.+.+.. ..+.-+|+..||.+.|.|. +|+|+++|.++++|+... ..... +.+|. ..+.
T Consensus 197 --RsiRlW~i~s~~~~----~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~-~~l~~-----y~~h~g~~iw 262 (967)
T KOG0974|consen 197 --RSIRLWPIDSREVL----GCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNG-TQLEV-----YDEHSGKGIW 262 (967)
T ss_pred --cceeeeeccccccc----CcccccccceeEEEEeccc--eeEEeccceEEEEEeccc-ceehh-----hhhhhhccee
Confidence 57999999887642 2456799999999999998 899999999999997643 33333 35664 4688
Q ss_pred EEEECCCCCEEEEeeCCCeeeeecccc
Q 006825 508 LANGSPEPTSLSPKHLDNHLEKKRRGR 534 (630)
Q Consensus 508 svafSpdg~~lasgs~Dg~I~i~~~~~ 534 (630)
.++..+....+++++.|+.+++|+...
T Consensus 263 ~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 263 KIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred EEEEcCCceEEEeeccCcchhhhhhhc
Confidence 999999999999999999999888644
No 241
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.71 E-value=2.3e-06 Score=95.32 Aligned_cols=201 Identities=14% Similarity=0.044 Sum_probs=115.6
Q ss_pred cccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCc
Q 006825 363 NNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKD 442 (630)
Q Consensus 363 vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~e 442 (630)
++|.... ..+.+. .+...+.+.+|||||++++..+.+ .....|++||..+++
T Consensus 202 i~d~dG~-~~~~l~-~~~~~~~~p~wSPDG~~La~~s~~--------------------------~g~~~L~~~dl~tg~ 253 (448)
T PRK04792 202 IADYDGY-NEQMLL-RSPEPLMSPAWSPDGRKLAYVSFE--------------------------NRKAEIFVQDIYTQV 253 (448)
T ss_pred EEeCCCC-CceEee-cCCCcccCceECCCCCEEEEEEec--------------------------CCCcEEEEEECCCCC
Confidence 4465443 334455 567788899999999988743322 112468889987764
Q ss_pred ccceeeeeEecccCcCEEEEEEccCCCEEEE-EeCCCc--EEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEE
Q 006825 443 LTALYKCQEIQAHNGSIWSIKFSLDGRYLAS-AGEDCV--IHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLS 519 (630)
Q Consensus 443 l~~~~~v~tL~gHt~~V~sVaFSpDG~~LAS-gS~Dgt--IrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~la 519 (630)
.. .+..+. +.....+|+|||+.|+. .+.++. |.+||+.+++.. .+ ..+.......+|+||++.|+
T Consensus 254 ~~---~lt~~~---g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~l-----t~~~~~~~~p~wSpDG~~I~ 321 (448)
T PRK04792 254 RE---KVTSFP---GINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RI-----TRHRAIDTEPSWHPDGKSLI 321 (448)
T ss_pred eE---EecCCC---CCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-EC-----ccCCCCccceEECCCCCEEE
Confidence 31 122233 33457899999997764 566775 777788776543 32 23334556789999999887
Q ss_pred EeeC-CCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEEC-CC--cEEEEe
Q 006825 520 PKHL-DNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSM-DK--TVRLWH 594 (630)
Q Consensus 520 sgs~-Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~-Dg--tVrIWD 594 (630)
..+. ++...+ .++++.+.....+.-+.......+|+|+ ++|+..+. ++ .|.++|
T Consensus 322 f~s~~~g~~~I---------------------y~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~d 380 (448)
T PRK04792 322 FTSERGGKPQI---------------------YRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQD 380 (448)
T ss_pred EEECCCCCceE---------------------EEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEE
Confidence 7653 232211 3445533333333222223345789999 77765554 44 345568
Q ss_pred CCCCcEEEEEecCCceEEEE-cCCCcEEEEec
Q 006825 595 LSSKTCLKIFSHSDYDISLV-DRLMLRFAYGA 625 (630)
Q Consensus 595 l~tg~~l~t~~H~~~V~sVa-s~~~~~lAsgs 625 (630)
+.+++... +.......... +|++..+++..
T Consensus 381 l~~g~~~~-lt~~~~d~~ps~spdG~~I~~~~ 411 (448)
T PRK04792 381 LETGAMQV-LTSTRLDESPSVAPNGTMVIYST 411 (448)
T ss_pred CCCCCeEE-ccCCCCCCCceECCCCCEEEEEE
Confidence 87776432 32111111223 66666666543
No 242
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.71 E-value=6.8e-06 Score=91.12 Aligned_cols=189 Identities=15% Similarity=0.087 Sum_probs=111.3
Q ss_pred cccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCc
Q 006825 363 NNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKD 442 (630)
Q Consensus 363 vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~e 442 (630)
+.++.+|+..+ +. ...+.....+|||||++|+-.++.. |..+..+.+|+...+.
T Consensus 215 ~~~l~~g~~~~-lt-~~~g~~~~p~wSPDG~~Laf~s~~~------------------------g~~di~~~~~~~~~g~ 268 (428)
T PRK01029 215 LGSLENPAGKK-IL-ALQGNQLMPTFSPRKKLLAFISDRY------------------------GNPDLFIQSFSLETGA 268 (428)
T ss_pred EEECCCCCceE-ee-cCCCCccceEECCCCCEEEEEECCC------------------------CCcceeEEEeecccCC
Confidence 44777775433 22 2334455689999999887543210 1123344556655421
Q ss_pred ccceeeeeEecccCcCEEEEEEccCCCEEEEEe-CCCcEEEEEC--cC-CceeeeeecccccCcccceEEEEECCCCCEE
Q 006825 443 LTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG-EDCVIHVWQV--VE-SERKGELLEKQEDGHLNMLLLANGSPEPTSL 518 (630)
Q Consensus 443 l~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS-~DgtIrVWDl--~t-g~~~~~l~~~~~~gh~~~V~svafSpdg~~l 518 (630)
... ..+...++.+.+...+|+|||++|+..+ .++...||.+ .. +.....+ ..+...+....|+|||+.|
T Consensus 269 ~g~--~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~l-----t~~~~~~~~p~wSPDG~~L 341 (428)
T PRK01029 269 IGK--PRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLL-----TKKYRNSSCPAWSPDGKKI 341 (428)
T ss_pred CCc--ceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEe-----ccCCCCccceeECCCCCEE
Confidence 111 1122333334556789999999877665 5676666654 22 2222222 2333456678999999988
Q ss_pred EEeeCCC---eeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEEC---CCcEE
Q 006825 519 SPKHLDN---HLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSM---DKTVR 591 (630)
Q Consensus 519 asgs~Dg---~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~---DgtVr 591 (630)
+....+. .| .+|++.+.....+......+....|+|| ++|+..+. ...|.
T Consensus 342 af~~~~~g~~~I-----------------------~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~ 398 (428)
T PRK01029 342 AFCSVIKGVRQI-----------------------CVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELY 398 (428)
T ss_pred EEEEcCCCCcEE-----------------------EEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEE
Confidence 8765432 23 6778755455555544446788999999 66664332 45788
Q ss_pred EEeCCCCcEEEEEecC
Q 006825 592 LWHLSSKTCLKIFSHS 607 (630)
Q Consensus 592 IWDl~tg~~l~t~~H~ 607 (630)
+||+..++........
T Consensus 399 ~vdl~~g~~~~Lt~~~ 414 (428)
T PRK01029 399 LISLITKKTRKIVIGS 414 (428)
T ss_pred EEECCCCCEEEeecCC
Confidence 9999888765554433
No 243
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.67 E-value=1.2e-05 Score=87.54 Aligned_cols=194 Identities=11% Similarity=0.011 Sum_probs=123.4
Q ss_pred eEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCC
Q 006825 351 VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQER 430 (630)
Q Consensus 351 laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~D 430 (630)
+++-..++.+. +.|..+.+.+.++..++ ..--.++|+|||+++. ..+.|
T Consensus 9 ~V~~~~~~~v~-viD~~t~~~~~~i~~~~-~~h~~~~~s~Dgr~~y-----------------------------v~~rd 57 (369)
T PF02239_consen 9 YVVERGSGSVA-VIDGATNKVVARIPTGG-APHAGLKFSPDGRYLY-----------------------------VANRD 57 (369)
T ss_dssp EEEEGGGTEEE-EEETTT-SEEEEEE-ST-TEEEEEE-TT-SSEEE-----------------------------EEETT
T ss_pred EEEecCCCEEE-EEECCCCeEEEEEcCCC-CceeEEEecCCCCEEE-----------------------------EEcCC
Confidence 45666778888 99999999999988433 3345588999998773 34567
Q ss_pred cEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEe-CCCcEEEEECcCCceeeeeeccccc--CcccceE
Q 006825 431 VRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG-EDCVIHVWQVVESERKGELLEKQED--GHLNMLL 507 (630)
Q Consensus 431 g~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS-~DgtIrVWDl~tg~~~~~l~~~~~~--gh~~~V~ 507 (630)
+.|.++|+.+.+ .+.+++.-.. -..+++++||++|+++. .++.+.|+|..+.+.++.+...... .....+.
T Consensus 58 g~vsviD~~~~~-----~v~~i~~G~~-~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~ 131 (369)
T PF02239_consen 58 GTVSVIDLATGK-----VVATIKVGGN-PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVA 131 (369)
T ss_dssp SEEEEEETTSSS-----EEEEEE-SSE-EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EE
T ss_pred CeEEEEECCccc-----EEEEEecCCC-cceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCce
Confidence 899999998876 3556655443 57899999999988775 6899999999999988876422211 2345677
Q ss_pred EEEECCCCCEEEEeeCC-CeeeeecccccccccccccCccccccEEEeC-CCCce-EEeccCCCCEEEEEEcCC-CeEEE
Q 006825 508 LANGSPEPTSLSPKHLD-NHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPI-CSFQGHLDDVLDLSWSKS-QHLLS 583 (630)
Q Consensus 508 svafSpdg~~lasgs~D-g~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l-~tL~GHs~~V~sLafSPd-~~LaS 583 (630)
.+..+|....++..-.+ +.| .+-+. ..+.+ .+............|.|+ +||+.
T Consensus 132 aIv~s~~~~~fVv~lkd~~~I-----------------------~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~v 188 (369)
T PF02239_consen 132 AIVASPGRPEFVVNLKDTGEI-----------------------WVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLV 188 (369)
T ss_dssp EEEE-SSSSEEEEEETTTTEE-----------------------EEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEE
T ss_pred eEEecCCCCEEEEEEccCCeE-----------------------EEEEeccccccceeeecccccccccccCcccceeee
Confidence 77778887755555444 433 22232 12222 233334456678999999 77655
Q ss_pred E-ECCCcEEEEeCCCCcEEEEE
Q 006825 584 S-SMDKTVRLWHLSSKTCLKIF 604 (630)
Q Consensus 584 g-S~DgtVrIWDl~tg~~l~t~ 604 (630)
+ -....|-++|+.+++.+..+
T Consensus 189 a~~~sn~i~viD~~~~k~v~~i 210 (369)
T PF02239_consen 189 AANGSNKIAVIDTKTGKLVALI 210 (369)
T ss_dssp EEGGGTEEEEEETTTTEEEEEE
T ss_pred cccccceeEEEeeccceEEEEe
Confidence 4 55789999999999887765
No 244
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.66 E-value=3.7e-06 Score=93.21 Aligned_cols=205 Identities=13% Similarity=0.042 Sum_probs=119.6
Q ss_pred cc--cCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCC
Q 006825 363 NN--GSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSC 440 (630)
Q Consensus 363 vW--D~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~ 440 (630)
|| |.. |...+.+. .....+.+-+|||||+.++- ..+.+. .....|++.++.+
T Consensus 167 l~~~d~d-G~~~~~lt-~~~~~~~sP~wSPDG~~~~~-----------------~y~S~~-------~g~~~I~~~~l~~ 220 (428)
T PRK01029 167 LWSVDYD-GQNLRPLT-QEHSLSITPTWMHIGSGFPY-----------------LYVSYK-------LGVPKIFLGSLEN 220 (428)
T ss_pred EEEEcCC-CCCceEcc-cCCCCcccceEccCCCceEE-----------------EEEEcc-------CCCceEEEEECCC
Confidence 55 443 33344455 34455677899999975320 000000 1123578888877
Q ss_pred CcccceeeeeEecccCcCEEEEEEccCCCEEEEEeC-----CCcEEEEECcCCc--eeeeeecccccCcccceEEEEECC
Q 006825 441 KDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE-----DCVIHVWQVVESE--RKGELLEKQEDGHLNMLLLANGSP 513 (630)
Q Consensus 441 ~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~-----DgtIrVWDl~tg~--~~~~l~~~~~~gh~~~V~svafSp 513 (630)
++. +.+....+.....+|+|||+.||..+. |..+.+|++..+. ....+. .+........+|+|
T Consensus 221 g~~------~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt----~~~~~~~~~p~wSP 290 (428)
T PRK01029 221 PAG------KKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLL----NEAFGTQGNPSFSP 290 (428)
T ss_pred CCc------eEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEee----cCCCCCcCCeEECC
Confidence 643 223334445567899999998886553 3345567876531 222321 22223345679999
Q ss_pred CCCEEEEeeC-CCeeeeecccccccccccccCccccccEEEeC--CCCceEEeccCCCCEEEEEEcCC-CeEEEEECC--
Q 006825 514 EPTSLSPKHL-DNHLEKKRRGRSINRKSLSLDHMVVPETVFAL--SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMD-- 587 (630)
Q Consensus 514 dg~~lasgs~-Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl--sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~D-- 587 (630)
||+.|+..+. ++...+ .++++ .+.....+..+...+....|+|| ++|+..+.+
T Consensus 291 DG~~Laf~s~~~g~~~l---------------------y~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g 349 (428)
T PRK01029 291 DGTRLVFVSNKDGRPRI---------------------YIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKG 349 (428)
T ss_pred CCCEEEEEECCCCCceE---------------------EEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCC
Confidence 9998887653 443311 22222 23334555555567788999999 778766553
Q ss_pred -CcEEEEeCCCCcEEEEEecCCceEEEE-cCCCcEEEEe
Q 006825 588 -KTVRLWHLSSKTCLKIFSHSDYDISLV-DRLMLRFAYG 624 (630)
Q Consensus 588 -gtVrIWDl~tg~~l~t~~H~~~V~sVa-s~~~~~lAsg 624 (630)
..|.+||+.+++..........+.... ++++..+++.
T Consensus 350 ~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~ 388 (428)
T PRK01029 350 VRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYS 388 (428)
T ss_pred CcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEE
Confidence 469999999987654333333455556 7777776654
No 245
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.66 E-value=5.8e-08 Score=108.72 Aligned_cols=211 Identities=18% Similarity=0.216 Sum_probs=140.8
Q ss_pred eeecCccceeEEEeec----ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcC-CCCeEEeecCCCCCcccc
Q 006825 334 MCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSV-TGHKERRSSDERDTSSEK 408 (630)
Q Consensus 334 ~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSp-dG~~lasgS~D~dt~s~~ 408 (630)
.+.||+..|+.+-|.| .||+.+.|..+. .||+.+.....-....|...-..|+|.- ++..+|+
T Consensus 109 ~lhghsraitd~n~~~q~pdVlatcsvdt~vh-~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlas----------- 176 (1081)
T KOG0309|consen 109 VLHGHSRAITDINFNPQHPDVLATCSVDTYVH-AWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLAS----------- 176 (1081)
T ss_pred EEecCccceeccccCCCCCcceeeccccccce-eeeccCCCcceeeeecccccCceeeecccCcchhhh-----------
Confidence 5789999999999988 799999999999 9999876543322225555556677765 4443432
Q ss_pred CCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc-CCCEEEEEeCCCcEEEEECcC
Q 006825 409 GGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVE 487 (630)
Q Consensus 409 gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp-DG~~LASgS~DgtIrVWDl~t 487 (630)
+....|++||...+.. .+..+++|...|+.++|+. --..+.+.+.|++|+.||...
T Consensus 177 -------------------shg~~i~vwd~r~gs~----pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~k 233 (1081)
T KOG0309|consen 177 -------------------SHGNDIFVWDLRKGST----PLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSK 233 (1081)
T ss_pred -------------------ccCCceEEEeccCCCc----ceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccc
Confidence 2334599999876642 5678999999999999987 445688999999999999865
Q ss_pred CceeeeeecccccCcccceEEEEECCCCC--EEEEeeCCCeeeeecccccccccccccCccccccEEEeC--CCCceEEe
Q 006825 488 SERKGELLEKQEDGHLNMLLLANGSPEPT--SLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL--SDKPICSF 563 (630)
Q Consensus 488 g~~~~~l~~~~~~gh~~~V~svafSpdg~--~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl--sgk~l~tL 563 (630)
.....+- ..-...+|..-.+.|=|. ++..--.+..+.+.... +. ...|+. ..+++++|
T Consensus 234 St~e~~~----~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~-----------n~---d~e~n~~~~~~pVh~F 295 (1081)
T KOG0309|consen 234 STTESKR----TVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCE-----------NS---DLEWNVFDLNTPVHTF 295 (1081)
T ss_pred cccccce----eccccCcceeccccccCceeEeccccCCeeeeecccc-----------ch---hhhhccccCCcceeee
Confidence 4332221 112224455555555432 22221111112111111 11 134554 34789999
Q ss_pred ccCCCCEEEEEEcC--------C---CeEEEEECCCcEEEEeCCC
Q 006825 564 QGHLDDVLDLSWSK--------S---QHLLSSSMDKTVRLWHLSS 597 (630)
Q Consensus 564 ~GHs~~V~sLafSP--------d---~~LaSgS~DgtVrIWDl~t 597 (630)
.||.+.|....|-. + -.|+|=|.|.++|+|-+..
T Consensus 296 ~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 296 VGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred cCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 99999998877743 1 3799999999999998764
No 246
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.65 E-value=6.8e-07 Score=98.63 Aligned_cols=205 Identities=13% Similarity=0.094 Sum_probs=145.1
Q ss_pred ceEeecCCCccEecccCCCCceeEEecC-Ccc-CCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEe
Q 006825 350 NVEEGNKDSFDLNNNGSSGGGMKSKKKG-SWF-KSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHG 427 (630)
Q Consensus 350 ~laSgS~D~tvr~vWD~~tG~~~~~lk~-gH~-~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sg 427 (630)
++|....|+-+| +|+.++++....+.. .|. +.-.+.+|- |.. ++. ....--...+....-.+..++-|
T Consensus 7 ~~A~~~~~g~l~-iw~t~~~~~~~e~~p~~~~s~t~~~~~w~-----L~~--~~s--~~k~~~~~~~~~~s~~t~~lvlg 76 (541)
T KOG4547|consen 7 YFALSTGDGRLR-IWDTAKNQLQQEFAPIASLSGTCTYTKWG-----LSA--DYS--PMKWLSLEKAKKASLDTSMLVLG 76 (541)
T ss_pred eEeecCCCCeEE-EEEccCceeeeeeccchhccCcceeEEEE-----EEe--ccc--hHHHHhHHHHhhccCCceEEEee
Confidence 578888999999 999999988776652 111 122223332 111 010 00000000111112233447888
Q ss_pred cCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceE
Q 006825 428 QERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLL 507 (630)
Q Consensus 428 s~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~ 507 (630)
..-|.|.+|+...+++... -+-..|.+.|.++.++.+-..|.|++.|+.+.+|+..+...++.. ......+.
T Consensus 77 t~~g~v~~ys~~~g~it~~---~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~-----~~~~~~~~ 148 (541)
T KOG4547|consen 77 TPQGSVLLYSVAGGEITAK---LSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIW-----KEQKPLVS 148 (541)
T ss_pred cCCccEEEEEecCCeEEEE---EecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeee-----ccCCCccc
Confidence 8999999999988875321 122579999999999999999999999999999999988877763 66677889
Q ss_pred EEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC------Ce
Q 006825 508 LANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS------QH 580 (630)
Q Consensus 508 svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd------~~ 580 (630)
+++.+||+..+++++ +.| ++|++ +.+.+.+|.||.++|.+++|--+ .+
T Consensus 149 sl~is~D~~~l~~as--~~i-----------------------k~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~ 203 (541)
T KOG4547|consen 149 SLCISPDGKILLTAS--RQI-----------------------KVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKY 203 (541)
T ss_pred eEEEcCCCCEEEecc--ceE-----------------------EEEEccCceEEEEecCCCcceEEEEEEEeccccccce
Confidence 999999999998875 455 88998 78899999999999999999653 34
Q ss_pred EE-EEECCCcEEEEeCCC
Q 006825 581 LL-SSSMDKTVRLWHLSS 597 (630)
Q Consensus 581 La-SgS~DgtVrIWDl~t 597 (630)
++ +...+.-|.+|-+..
T Consensus 204 vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 204 VLSSAAAERGITVWVVEK 221 (541)
T ss_pred eeeccccccceeEEEEEc
Confidence 44 555677788887654
No 247
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.64 E-value=4.3e-08 Score=106.61 Aligned_cols=214 Identities=15% Similarity=0.093 Sum_probs=143.8
Q ss_pred ceeeecCccceeEEEeec---ceEeecCCCccEecccCCC-------CceeEEecCCccCCEEEEEEcCCCCeEEeecCC
Q 006825 332 FEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSG-------GGMKSKKKGSWFKSIRTVASSVTGHKERRSSDE 401 (630)
Q Consensus 332 f~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~t-------G~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D 401 (630)
++.+.||+..|++++--. ..+++|.|+||+ +|.++. ..+..+.. .|+++|..+-|-.+-++++
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVK-LWSik~EgD~~~tsaCQfTY~-aHkk~i~~igfL~~lr~i~----- 800 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVK-LWSIKPEGDEIGTSACQFTYQ-AHKKPIHDIGFLADLRSIA----- 800 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEE-EEEeccccCccccceeeeEhh-hccCcccceeeeeccceee-----
Confidence 467899999999886544 688999999999 998753 33666777 8999999998888766665
Q ss_pred CCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEec-ccCcCEEEEEEcc--CCCE-EEEEeCC
Q 006825 402 RDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQ-AHNGSIWSIKFSL--DGRY-LASAGED 477 (630)
Q Consensus 402 ~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~-gHt~~V~sVaFSp--DG~~-LASgS~D 477 (630)
+-|+-|++||.--+.+.. |.+. ...+.+..|..-+ +..+ +|-++..
T Consensus 801 --------------------------ScD~giHlWDPFigr~La----q~~dapk~~a~~~ikcl~nv~~~iliAgcsae 850 (1034)
T KOG4190|consen 801 --------------------------SCDGGIHLWDPFIGRLLA----QMEDAPKEGAGGNIKCLENVDRHILIAGCSAE 850 (1034)
T ss_pred --------------------------eccCcceeecccccchhH----hhhcCcccCCCceeEecccCcchheeeeccch
Confidence 346779999976554321 1111 1223333343333 3333 3444788
Q ss_pred CcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCC
Q 006825 478 CVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD 557 (630)
Q Consensus 478 gtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsg 557 (630)
.|||++|.+.++-..++....-.+....+.+++..+.|..++.+-..|.|.+.+.. +|
T Consensus 851 STVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR----------------------~G 908 (1034)
T KOG4190|consen 851 STVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDAR----------------------NG 908 (1034)
T ss_pred hhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecC----------------------CC
Confidence 99999999998877776544445666778899999999999999888888433322 44
Q ss_pred CceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEE-EeCCCCcEEEEEe
Q 006825 558 KPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRL-WHLSSKTCLKIFS 605 (630)
Q Consensus 558 k~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrI-WDl~tg~~l~t~~ 605 (630)
+.+-......-....++- |. +.|+....|.++-+ |..-.|....+.+
T Consensus 909 ~vINswrpmecdllqlaa-psdq~L~~saldHslaVnWhaldgimh~q~k 957 (1034)
T KOG4190|consen 909 KVINSWRPMECDLLQLAA-PSDQALAQSALDHSLAVNWHALDGIMHLQDK 957 (1034)
T ss_pred ceeccCCcccchhhhhcC-chhHHHHhhcccceeEeeehhcCCeeeeccC
Confidence 444333322222333332 44 77888888888888 8877776555443
No 248
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.62 E-value=8.6e-08 Score=115.52 Aligned_cols=194 Identities=15% Similarity=0.151 Sum_probs=143.9
Q ss_pred CccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceE
Q 006825 338 HSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSS 414 (630)
Q Consensus 338 Hs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~V 414 (630)
|-..|..+--.| +-+||+.|+.++ +|-...+..+..++..-...|..+.|+-.|...
T Consensus 2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~-~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~------------------- 2266 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVR-MFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKF------------------- 2266 (2439)
T ss_pred ccCceeeecCCCCCceEEecCCCceEE-EEeccCCCeEEEeeccCcchhhhhhhcccCCce-------------------
Confidence 334444444444 677999999999 998877776666553222666666666666543
Q ss_pred EEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEe---CCCcEEEEECcCCcee
Q 006825 415 SATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG---EDCVIHVWQVVESERK 491 (630)
Q Consensus 415 sa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS---~DgtIrVWDl~tg~~~ 491 (630)
..+..||.+-+|.+..+ .....+.|........|-. ..+++++ .++.+.+||..-....
T Consensus 2267 ----------~i~d~dg~l~l~q~~pk------~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~ 2328 (2439)
T KOG1064|consen 2267 ----------GIVDGDGDLSLWQASPK------PYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMN 2328 (2439)
T ss_pred ----------eeeccCCceeecccCCc------ceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCccc
Confidence 34456888999988744 2345677999999999965 6788875 6789999997544332
Q ss_pred eeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCE
Q 006825 492 GELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDV 570 (630)
Q Consensus 492 ~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V 570 (630)
.-+ ...|.+.++++++-|...++++|+.+|.| ++||+ ..+++++++.
T Consensus 2329 s~v----~~~H~~gaT~l~~~P~~qllisggr~G~v-----------------------~l~D~rqrql~h~~~~----- 2376 (2439)
T KOG1064|consen 2329 SLV----HTCHDGGATVLAYAPKHQLLISGGRKGEV-----------------------CLFDIRQRQLRHTFQA----- 2376 (2439)
T ss_pred cee----eeecCCCceEEEEcCcceEEEecCCcCcE-----------------------EEeehHHHHHHHHhhh-----
Confidence 222 37899999999999999999999999999 78887 4556655553
Q ss_pred EEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825 571 LDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS 605 (630)
Q Consensus 571 ~sLafSPd~~LaSgS~DgtVrIWDl~tg~~l~t~~ 605 (630)
+....+|++|+..|.|+||++..-..+++|+
T Consensus 2377 ----~~~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2377 ----LDTREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred ----hhhhheeeccCcccceEEEEccccchhhcCc
Confidence 4422899999999999999999999999887
No 249
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.60 E-value=3.5e-06 Score=99.32 Aligned_cols=198 Identities=8% Similarity=-0.001 Sum_probs=127.4
Q ss_pred ccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcc
Q 006825 364 NGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDL 443 (630)
Q Consensus 364 WD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el 443 (630)
|.. .|..+..+. .|...|..+|.++.- ...+++|+.||+||+|+...-+-
T Consensus 1034 W~p-~G~lVAhL~-Ehs~~v~k~a~s~~~----------------------------~s~FvsgS~DGtVKvW~~~k~~~ 1083 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLH-EHSSAVIKLAVSSEH----------------------------TSLFVSGSDDGTVKVWNLRKLEG 1083 (1431)
T ss_pred CCc-cceEeehhh-hccccccceeecCCC----------------------------CceEEEecCCceEEEeeehhhhc
Confidence 444 466666666 677777666666531 23467888999999999753221
Q ss_pred --cceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeee----cccccCcccceEEEEECCC-CC
Q 006825 444 --TALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELL----EKQEDGHLNMLLLANGSPE-PT 516 (630)
Q Consensus 444 --~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~----~~~~~gh~~~V~svafSpd-g~ 516 (630)
....+..++.--...+.++.+-+.|..+|.++.||.|++..+..-...+... ..........|...+|... +.
T Consensus 1084 ~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S 1163 (1431)
T KOG1240|consen 1084 EGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQS 1163 (1431)
T ss_pred CcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccc
Confidence 2223344555456789999999999999999999999999986521111110 1111111223344444333 22
Q ss_pred -EEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEE--eccCCCCEEEEEEcCC-CeEEEEECCCcEE
Q 006825 517 -SLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICS--FQGHLDDVLDLSWSKS-QHLLSSSMDKTVR 591 (630)
Q Consensus 517 -~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~t--L~GHs~~V~sLafSPd-~~LaSgS~DgtVr 591 (630)
.++.+..-+.| ..|+. ....+.+ +.-..+.|++++.+|- .+++.|..-|.+-
T Consensus 1164 ~~lvy~T~~~~i-----------------------v~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~ 1220 (1431)
T KOG1240|consen 1164 HVLVYATDLSRI-----------------------VSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLV 1220 (1431)
T ss_pred eeEEEEEeccce-----------------------EEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEE
Confidence 45555555555 44554 2112222 2224478999999998 9999999999999
Q ss_pred EEeCCCCcEEEEEe--cCCceEEEE
Q 006825 592 LWHLSSKTCLKIFS--HSDYDISLV 614 (630)
Q Consensus 592 IWDl~tg~~l~t~~--H~~~V~sVa 614 (630)
+||++-+.++.... +..+++-|.
T Consensus 1221 lWDLRF~~~i~sw~~P~~~~i~~v~ 1245 (1431)
T KOG1240|consen 1221 LWDLRFRVPILSWEHPARAPIRHVW 1245 (1431)
T ss_pred EEEeecCceeecccCcccCCcceEE
Confidence 99999999988887 556666665
No 250
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.59 E-value=2.4e-06 Score=94.46 Aligned_cols=162 Identities=16% Similarity=0.151 Sum_probs=127.1
Q ss_pred eEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEE------cc--------------CCCEEEEEeCCCcEEE
Q 006825 423 VSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKF------SL--------------DGRYLASAGEDCVIHV 482 (630)
Q Consensus 423 ~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaF------Sp--------------DG~~LASgS~DgtIrV 482 (630)
.++....||.+|+|+...+++...+. ....-++...+.+| +| |-..|+-|-.-|.|.+
T Consensus 7 ~~A~~~~~g~l~iw~t~~~~~~~e~~--p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ 84 (541)
T KOG4547|consen 7 YFALSTGDGRLRIWDTAKNQLQQEFA--PIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLL 84 (541)
T ss_pred eEeecCCCCeEEEEEccCceeeeeec--cchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEE
Confidence 36777889999999998776533221 11112233333333 22 2346777888899999
Q ss_pred EECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceE
Q 006825 483 WQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPIC 561 (630)
Q Consensus 483 WDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~ 561 (630)
+++..++....+. ...|.+.|.++.++.+-..|.+++.|..+ ..|.+ ..+.++
T Consensus 85 ys~~~g~it~~~s---t~~h~~~v~~~~~~~~~~ciyS~~ad~~v-----------------------~~~~~~~~~~~~ 138 (541)
T KOG4547|consen 85 YSVAGGEITAKLS---TDKHYGNVNEILDAQRLGCIYSVGADLKV-----------------------VYILEKEKVIIR 138 (541)
T ss_pred EEecCCeEEEEEe---cCCCCCcceeeecccccCceEecCCceeE-----------------------EEEecccceeee
Confidence 9999998777753 36788999999999888889999999988 66777 667788
Q ss_pred EeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE
Q 006825 562 SFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV 614 (630)
Q Consensus 562 tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa 614 (630)
.+.+....+.+++.+|| +.|+++| ++|++||+.+++.+.+|. |.+.|.+++
T Consensus 139 ~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~ 191 (541)
T KOG4547|consen 139 IWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLS 191 (541)
T ss_pred eeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEE
Confidence 88888899999999999 9999887 589999999999999999 999999999
No 251
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.58 E-value=1.2e-05 Score=83.51 Aligned_cols=162 Identities=12% Similarity=0.077 Sum_probs=109.4
Q ss_pred CcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECc-CCceeeeeecccccCcccceEE
Q 006825 430 RVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVV-ESERKGELLEKQEDGHLNMLLL 508 (630)
Q Consensus 430 Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~-tg~~~~~l~~~~~~gh~~~V~s 508 (630)
-.+|.|||-.-. .++.+|. -..+|.+|.+.++- |+..- ..+|.||... +.+.+..+.. ......+-+
T Consensus 74 pNkviIWDD~k~-----~~i~el~-f~~~I~~V~l~r~r--iVvvl-~~~I~VytF~~n~k~l~~~et---~~NPkGlC~ 141 (346)
T KOG2111|consen 74 PNKVIIWDDLKE-----RCIIELS-FNSEIKAVKLRRDR--IVVVL-ENKIYVYTFPDNPKLLHVIET---RSNPKGLCS 141 (346)
T ss_pred CceEEEEecccC-----cEEEEEE-eccceeeEEEcCCe--EEEEe-cCeEEEEEcCCChhheeeeec---ccCCCceEe
Confidence 358999993211 2455554 56789999997754 44443 5789999997 3444444321 111122222
Q ss_pred EEECCCCCEEEE-eeCCCeeeeecccccccccccccCccccccEEEeCCC-C--ceEEeccCCCCEEEEEEcCC-CeEEE
Q 006825 509 ANGSPEPTSLSP-KHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD-K--PICSFQGHLDDVLDLSWSKS-QHLLS 583 (630)
Q Consensus 509 vafSpdg~~las-gs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsg-k--~l~tL~GHs~~V~sLafSPd-~~LaS 583 (630)
+.-+..-.+|+. |-.-|.| +|-++.. + +...+..|...|.|++.+.+ .+|||
T Consensus 142 ~~~~~~k~~LafPg~k~Gqv-----------------------Qi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vAT 198 (346)
T KOG2111|consen 142 LCPTSNKSLLAFPGFKTGQV-----------------------QIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVAT 198 (346)
T ss_pred ecCCCCceEEEcCCCccceE-----------------------EEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEE
Confidence 222223334443 3344555 4444421 1 34667899999999999999 89999
Q ss_pred EECCCc-EEEEeCCCCcEEEEEe---cCCceEEEE-cCCCcEEEEecc
Q 006825 584 SSMDKT-VRLWHLSSKTCLKIFS---HSDYDISLV-DRLMLRFAYGAF 626 (630)
Q Consensus 584 gS~Dgt-VrIWDl~tg~~l~t~~---H~~~V~sVa-s~~~~~lAsgs~ 626 (630)
+|.-|| |||||..+|+.++.+. ....|.||+ +++..++|.++.
T Consensus 199 aStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSd 246 (346)
T KOG2111|consen 199 ASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSD 246 (346)
T ss_pred eccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcC
Confidence 999998 5999999999999997 667899999 999999998863
No 252
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.56 E-value=1.8e-07 Score=67.50 Aligned_cols=37 Identities=41% Similarity=0.658 Sum_probs=35.6
Q ss_pred eeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 006825 448 KCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQ 484 (630)
Q Consensus 448 ~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWD 484 (630)
+++++++|.+.|++|+|+|++++|+||+.|++|+|||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 5788999999999999999999999999999999997
No 253
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.54 E-value=2.2e-07 Score=99.85 Aligned_cols=154 Identities=16% Similarity=0.141 Sum_probs=110.7
Q ss_pred eeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccC
Q 006825 333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKG 409 (630)
Q Consensus 333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~g 409 (630)
+-+.-| ..|..|-|-| .||+++.-+.++ --|+.+|+.+..+. --.+.+..++-.|-
T Consensus 204 HClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~-Y~DVS~GklVa~~~-t~~G~~~vm~qNP~------------------ 262 (545)
T KOG1272|consen 204 HCLKRH-IRVARLEFLPYHFLLVAASEAGFLK-YQDVSTGKLVASIR-TGAGRTDVMKQNPY------------------ 262 (545)
T ss_pred eehhhc-CchhhhcccchhheeeecccCCceE-EEeechhhhhHHHH-ccCCccchhhcCCc------------------
Confidence 444433 4578888988 688888888888 77999999887776 33444444444442
Q ss_pred CcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCc
Q 006825 410 GRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE 489 (630)
Q Consensus 410 h~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~ 489 (630)
..++-.|...|+|-+|....++. +..+..|.++|.+|++.++|+|+||.|.|..|+|||++...
T Consensus 263 -----------NaVih~GhsnGtVSlWSP~skeP-----LvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ 326 (545)
T KOG1272|consen 263 -----------NAVIHLGHSNGTVSLWSPNSKEP-----LVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY 326 (545)
T ss_pred -----------cceEEEcCCCceEEecCCCCcch-----HHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccc
Confidence 23356788899999999877763 34456799999999999999999999999999999998877
Q ss_pred eeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeec
Q 006825 490 RKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKR 531 (630)
Q Consensus 490 ~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~ 531 (630)
.+..+. . ......+++|..|.+ +.+....+.+|.
T Consensus 327 ql~t~~----t--p~~a~~ls~SqkglL--A~~~G~~v~iw~ 360 (545)
T KOG1272|consen 327 QLHTYR----T--PHPASNLSLSQKGLL--ALSYGDHVQIWK 360 (545)
T ss_pred ccceee----c--CCCccccccccccce--eeecCCeeeeeh
Confidence 555531 1 234556777766643 344566675554
No 254
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.50 E-value=4.9e-06 Score=87.51 Aligned_cols=170 Identities=16% Similarity=0.169 Sum_probs=113.8
Q ss_pred EEEecCCcEEEEEeCCCCcccceeeeeEecc-cCcCEEEEEEccC-CCEEEEEeCCCcEEEEECcCCceeee----e---
Q 006825 424 SFHGQERVRVRQYGKSCKDLTALYKCQEIQA-HNGSIWSIKFSLD-GRYLASAGEDCVIHVWQVVESERKGE----L--- 494 (630)
Q Consensus 424 l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~g-Ht~~V~sVaFSpD-G~~LASgS~DgtIrVWDl~tg~~~~~----l--- 494 (630)
++.+..|-.||+|+++.... ..|+. -...|+||+|-|. +..|+.|..- -|.||.......... .
T Consensus 113 fava~nddvVriy~ksst~p------t~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~~~s~~ 185 (445)
T KOG2139|consen 113 FAVATNDDVVRIYDKSSTCP------TKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIRMMSTH 185 (445)
T ss_pred hhhhccCcEEEEeccCCCCC------ceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccccccccccccccc
Confidence 56777888999999987543 23332 2456999999994 4567777764 599998743211110 0
Q ss_pred --ecccccCcccceEEEEECCCCCEEEEeeCC-CeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCE
Q 006825 495 --LEKQEDGHLNMLLLANGSPEPTSLSPKHLD-NHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDV 570 (630)
Q Consensus 495 --~~~~~~gh~~~V~svafSpdg~~lasgs~D-g~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V 570 (630)
-.....|| ..|.+++|.+||..+++++-+ ..| .||++ ++..+.-..---+.+
T Consensus 186 ~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi-----------------------~iWdpdtg~~~pL~~~glgg~ 241 (445)
T KOG2139|consen 186 HLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSI-----------------------MIWDPDTGQKIPLIPKGLGGF 241 (445)
T ss_pred chhheeCCCC-ceeeEEEEcCCCCEEeecccCcceE-----------------------EEEcCCCCCcccccccCCCce
Confidence 01113455 789999999999999998755 455 78888 444433322344568
Q ss_pred EEEEEcCC-CeEEEEECCCcEEEEe-CCCCcEEEEEecCCceEEEE-cCCCcEEEEe
Q 006825 571 LDLSWSKS-QHLLSSSMDKTVRLWH-LSSKTCLKIFSHSDYDISLV-DRLMLRFAYG 624 (630)
Q Consensus 571 ~sLafSPd-~~LaSgS~DgtVrIWD-l~tg~~l~t~~H~~~V~sVa-s~~~~~lAsg 624 (630)
.-|.|||| .+|..+..|++.++|+ ..+..+.+-.-..++|.... +|.+..|.+.
T Consensus 242 slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~ 298 (445)
T KOG2139|consen 242 SLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFA 298 (445)
T ss_pred eeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEE
Confidence 89999999 9999999999999994 44444444443455776666 6666655544
No 255
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.48 E-value=2.9e-07 Score=66.45 Aligned_cols=38 Identities=34% Similarity=0.706 Sum_probs=36.0
Q ss_pred CCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEe
Q 006825 557 DKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWH 594 (630)
Q Consensus 557 gk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWD 594 (630)
++++++|.+|...|++|+|+|+ .+|++++.|++|+|||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 3678899999999999999999 9999999999999997
No 256
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.48 E-value=0.00019 Score=87.89 Aligned_cols=154 Identities=10% Similarity=0.073 Sum_probs=95.6
Q ss_pred EEEecCCcEEEEEeCCCCccccee---eeeEeccc------CcCEEEEEEccCCC-EEEEEeCCCcEEEEECcCCceeee
Q 006825 424 SFHGQERVRVRQYGKSCKDLTALY---KCQEIQAH------NGSIWSIKFSLDGR-YLASAGEDCVIHVWQVVESERKGE 493 (630)
Q Consensus 424 l~Sgs~Dg~VriWd~~~~el~~~~---~v~tL~gH------t~~V~sVaFSpDG~-~LASgS~DgtIrVWDl~tg~~~~~ 493 (630)
+++.....+|++|+...+...... ......++ -...+.|+|+|+|+ ++++-+.++.|++||+.++.....
T Consensus 698 yVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~ 777 (1057)
T PLN02919 698 YIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLL 777 (1057)
T ss_pred EEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEE
Confidence 455566777888887654321000 00001111 12356799999998 555667789999999987653211
Q ss_pred eecc--------ccc--------CcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCC
Q 006825 494 LLEK--------QED--------GHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD 557 (630)
Q Consensus 494 l~~~--------~~~--------gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsg 557 (630)
.... .+. ........++++++|.++++...++.|++++ ..+
T Consensus 778 ~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD-----------------------~~t 834 (1057)
T PLN02919 778 AGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLD-----------------------PAT 834 (1057)
T ss_pred EecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEE-----------------------CCC
Confidence 0000 000 0111235788999999999988888995444 422
Q ss_pred CceEEe--------------ccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcE
Q 006825 558 KPICSF--------------QGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTC 600 (630)
Q Consensus 558 k~l~tL--------------~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~ 600 (630)
..+.++ .++-.....|+++++ +++++-+.+++|++||+.+++.
T Consensus 835 g~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 835 KRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 222222 223345688999999 8888889999999999999875
No 257
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.43 E-value=1.5e-05 Score=84.51 Aligned_cols=196 Identities=9% Similarity=0.075 Sum_probs=145.2
Q ss_pred ccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc-CCCEEEEEeCC--CcEEEE
Q 006825 407 EKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASAGED--CVIHVW 483 (630)
Q Consensus 407 ~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp-DG~~LASgS~D--gtIrVW 483 (630)
.......|..+.....-+.++-.+|.+.+|..+.+++... .+..+.-| ..+..|.-.+ +..++|+||.. ..++||
T Consensus 101 ~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss-~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiw 178 (412)
T KOG3881|consen 101 VSLGTKSIKGLKLADGTLITCVSSGNLQVRHDKSGDLHSS-KLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIW 178 (412)
T ss_pred cccccccccchhhcCCEEEEEecCCcEEEEeccCCccccc-cceeeecC-CceeeeccCCCCCceEecCchhcccceeee
Confidence 4555666666666666689999999999999886653211 12233333 4566676666 45577779998 889999
Q ss_pred ECcCCceeeeeeccc--ccC--cccceEEEEECCC--CCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC--
Q 006825 484 QVVESERKGELLEKQ--EDG--HLNMLLLANGSPE--PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-- 555 (630)
Q Consensus 484 Dl~tg~~~~~l~~~~--~~g--h~~~V~svafSpd--g~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-- 555 (630)
|+++.+.+..-...+ .-+ ..-++..+.|-+. ...++++..-+.+ ++|+.
T Consensus 179 dle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqv-----------------------R~YDt~~ 235 (412)
T KOG3881|consen 179 DLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQV-----------------------RLYDTRH 235 (412)
T ss_pred ecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeE-----------------------EEecCcc
Confidence 998875543321000 001 1234557888887 8889999888888 66666
Q ss_pred CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEE-Ee-cCCceEEEE-cCCCcEEEEecce
Q 006825 556 SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKI-FS-HSDYDISLV-DRLMLRFAYGAFL 627 (630)
Q Consensus 556 sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t-~~-H~~~V~sVa-s~~~~~lAsgs~~ 627 (630)
..+|+..|.--...|+++...|+ +++++|-.-+.+..+|++.++.+.. |+ -.+.|++|. +|...++|+.+.+
T Consensus 236 qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLD 311 (412)
T KOG3881|consen 236 QRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLD 311 (412)
T ss_pred cCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccc
Confidence 45788888877889999999999 9999999999999999999998877 66 889999999 8888888888755
No 258
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.43 E-value=0.0012 Score=71.15 Aligned_cols=271 Identities=15% Similarity=0.062 Sum_probs=143.8
Q ss_pred ccccccEEEEECCCCcEEEEeeec-CCCc-eeEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeec-CCCcc
Q 006825 287 GVAEQGCLIKNLDNGKEFVVNEIQ-EDGT-WKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGN-KDSFD 360 (630)
Q Consensus 287 ~~~~~~~~I~~LddG~~~~v~e~~-~dg~-~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS-~D~tv 360 (630)
...+..+...+.+....|++.+.. ..|. ....++..+|+..-+.++.. .|.. -..|++.| .|+.+. .++++
T Consensus 35 ~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~-~g~~--p~~i~~~~~g~~l~vany~~g~v 111 (345)
T PF10282_consen 35 EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPS-GGSS--PCHIAVDPDGRFLYVANYGGGSV 111 (345)
T ss_dssp ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEE-SSSC--EEEEEECTTSSEEEEEETTTTEE
T ss_pred CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeecc-CCCC--cEEEEEecCCCEEEEEEccCCeE
Confidence 345556666666666666666653 3333 22233333344442232221 2332 23566766 444444 47777
Q ss_pred EecccCCC-CceeEE---ecC---------CccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEe
Q 006825 361 LNNNGSSG-GGMKSK---KKG---------SWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHG 427 (630)
Q Consensus 361 r~vWD~~t-G~~~~~---lk~---------gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sg 427 (630)
. ++++.. |..... ++. .-....-++.|+|+|+++.. .-
T Consensus 112 ~-v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v----------------------------~d 162 (345)
T PF10282_consen 112 S-VFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV----------------------------PD 162 (345)
T ss_dssp E-EEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE----------------------------EE
T ss_pred E-EEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE----------------------------Ee
Confidence 7 888866 443332 110 11233446777777776542 22
Q ss_pred cCCcEEEEEeCCCCcccceeeeeEeccc-CcCEEEEEEccCCCEEEEE-eCCCcEEEEECc--CCce--eeeeecccc-c
Q 006825 428 QERVRVRQYGKSCKDLTALYKCQEIQAH-NGSIWSIKFSLDGRYLASA-GEDCVIHVWQVV--ESER--KGELLEKQE-D 500 (630)
Q Consensus 428 s~Dg~VriWd~~~~el~~~~~v~tL~gH-t~~V~sVaFSpDG~~LASg-S~DgtIrVWDl~--tg~~--~~~l~~~~~-~ 500 (630)
-..-+|++|++...... +.....+.-. ...-..|+|+|+|+++... -.+++|.++++. ++.. +..+..... .
T Consensus 163 lG~D~v~~~~~~~~~~~-l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~ 241 (345)
T PF10282_consen 163 LGADRVYVYDIDDDTGK-LTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGF 241 (345)
T ss_dssp TTTTEEEEEEE-TTS-T-EEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTS
T ss_pred cCCCEEEEEEEeCCCce-EEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccc
Confidence 23346888877654311 1122333322 3346889999999987665 467889999998 3322 111111111 1
Q ss_pred CcccceEEEEECCCCCEEEEeeCC-CeeeeecccccccccccccCccccccEEEeCC---CC--ceEEeccCCCCEEEEE
Q 006825 501 GHLNMLLLANGSPEPTSLSPKHLD-NHLEKKRRGRSINRKSLSLDHMVVPETVFALS---DK--PICSFQGHLDDVLDLS 574 (630)
Q Consensus 501 gh~~~V~svafSpdg~~lasgs~D-g~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdls---gk--~l~tL~GHs~~V~sLa 574 (630)
........++++|||++|.++... ..| .+|++. |+ .+..+......-..++
T Consensus 242 ~~~~~~~~i~ispdg~~lyvsnr~~~sI-----------------------~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~ 298 (345)
T PF10282_consen 242 TGENAPAEIAISPDGRFLYVSNRGSNSI-----------------------SVFDLDPATGTLTLVQTVPTGGKFPRHFA 298 (345)
T ss_dssp CSSSSEEEEEE-TTSSEEEEEECTTTEE-----------------------EEEEECTTTTTEEEEEEEEESSSSEEEEE
T ss_pred cccCCceeEEEecCCCEEEEEeccCCEE-----------------------EEEEEecCCCceEEEEEEeCCCCCccEEE
Confidence 111257789999999988776543 455 556551 22 2223333334478999
Q ss_pred EcCC-CeEEEEE-CCCcEEEEeC--CCCcEEEEEe--cCCceEEE
Q 006825 575 WSKS-QHLLSSS-MDKTVRLWHL--SSKTCLKIFS--HSDYDISL 613 (630)
Q Consensus 575 fSPd-~~LaSgS-~DgtVrIWDl--~tg~~l~t~~--H~~~V~sV 613 (630)
|+|+ ++|+.+. .+++|.+|++ .+|.+...-. .-....||
T Consensus 299 ~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci 343 (345)
T PF10282_consen 299 FSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCI 343 (345)
T ss_dssp E-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEE
T ss_pred EeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEE
Confidence 9999 8777666 5789999866 5777655443 33444454
No 259
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=6.8e-07 Score=97.49 Aligned_cols=173 Identities=13% Similarity=0.164 Sum_probs=122.7
Q ss_pred ccCCcceEEEeec--CCCeEEEecCCcEEEEEeCCCC--cccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEE
Q 006825 407 EKGGRRSSSATDD--SQDVSFHGQERVRVRQYGKSCK--DLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHV 482 (630)
Q Consensus 407 ~~gh~~~Vsa~~~--s~d~l~Sgs~Dg~VriWd~~~~--el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrV 482 (630)
..||+..|.++.- ....+++++.|.+|++|.++.. +.....|.-++++|+.+|..+.|-.+-++++++ |+.|++
T Consensus 731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHl 808 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHL 808 (1034)
T ss_pred ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCccee
Confidence 7788887766542 2334899999999999987642 233334778899999999999999999988865 899999
Q ss_pred EECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceE
Q 006825 483 WQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPIC 561 (630)
Q Consensus 483 WDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~ 561 (630)
||---+..+.++...+..+..+.|.++.--....+++.++...++ ++++. .++-++
T Consensus 809 WDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTV-----------------------Kl~DaRsce~~~ 865 (1034)
T KOG4190|consen 809 WDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTV-----------------------KLFDARSCEWTC 865 (1034)
T ss_pred ecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhh-----------------------eeeeccccccee
Confidence 998877777655444334444445544322223334444666677 44444 333333
Q ss_pred Ee-----ccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEE
Q 006825 562 SF-----QGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIF 604 (630)
Q Consensus 562 tL-----~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~ 604 (630)
.+ .+....+.+++..+. ++++.+=..|+|-+.|.++|+.+..+
T Consensus 866 E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINsw 914 (1034)
T KOG4190|consen 866 ELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSW 914 (1034)
T ss_pred eEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccC
Confidence 32 456677899999998 99999999999999999999977743
No 260
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.36 E-value=0.00076 Score=72.90 Aligned_cols=265 Identities=11% Similarity=0.016 Sum_probs=138.0
Q ss_pred eEEEEcCCCceEeeecceee-ecCccceeEEEeec----ceEeec---------CCCccEecccCCCCceeEEecCCcc-
Q 006825 316 KKVKEVGTGRQLTIEEFEMC-VGHSPIVQELMRRQ----NVEEGN---------KDSFDLNNNGSSGGGMKSKKKGSWF- 380 (630)
Q Consensus 316 ~~l~dv~TG~~lt~eef~~l-~GHs~~V~~Lafs~----~laSgS---------~D~tvr~vWD~~tG~~~~~lk~gH~- 380 (630)
..+-|..+++.+ .++ .|..+.. + ++| ..++.+ .+..|. +||.+|++.+.++..+-.
T Consensus 29 v~ViD~~~~~v~-----g~i~~G~~P~~--~-~spDg~~lyva~~~~~R~~~G~~~d~V~-v~D~~t~~~~~~i~~p~~p 99 (352)
T TIGR02658 29 VYTIDGEAGRVL-----GMTDGGFLPNP--V-VASDGSFFAHASTVYSRIARGKRTDYVE-VIDPQTHLPIADIELPEGP 99 (352)
T ss_pred EEEEECCCCEEE-----EEEEccCCCce--e-ECCCCCEEEEEeccccccccCCCCCEEE-EEECccCcEEeEEccCCCc
Confidence 456677777766 222 2333333 2 555 233333 677888 999999999988874311
Q ss_pred -----CCEEEEEEcCCCCeEEeecCCC-CCcc--ccCCcceEEEeecCCCe--EEEe--------cCCcEEEEEeCCCCc
Q 006825 381 -----KSIRTVASSVTGHKERRSSDER-DTSS--EKGGRRSSSATDDSQDV--SFHG--------QERVRVRQYGKSCKD 442 (630)
Q Consensus 381 -----~~V~sVAfSpdG~~lasgS~D~-dt~s--~~gh~~~Vsa~~~s~d~--l~Sg--------s~Dg~VriWd~~~~e 442 (630)
..-..++++|||+++.....+. ..-. -......+.-++. +++ ++.. +.|++..........
T Consensus 100 ~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v-p~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g 178 (352)
T TIGR02658 100 RFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV-PDCYHIFPTANDTFFMHCRDGSLAKVGYGTKG 178 (352)
T ss_pred hhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC-CCCcEEEEecCCccEEEeecCceEEEEecCCC
Confidence 1223689999999887665442 1100 1111111111111 222 2222 233333332221110
Q ss_pred ccceeeeeEecccCcCEEEE-EEcc-CCCEEEEEeCCCcEEEEECcCCcee-----eeeecccc-cC-cccceEEEEECC
Q 006825 443 LTALYKCQEIQAHNGSIWSI-KFSL-DGRYLASAGEDCVIHVWQVVESERK-----GELLEKQE-DG-HLNMLLLANGSP 513 (630)
Q Consensus 443 l~~~~~v~tL~gHt~~V~sV-aFSp-DG~~LASgS~DgtIrVWDl~tg~~~-----~~l~~~~~-~g-h~~~V~svafSp 513 (630)
.........+.+-..+|..= .|.+ +|+++....+ |+|.+-|+...... ..+..... .+ ....+.-++++|
T Consensus 179 ~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~ 257 (352)
T TIGR02658 179 NPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR 257 (352)
T ss_pred ceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC
Confidence 00000111111111111110 4556 8988887776 99999996443221 11100000 01 122333489999
Q ss_pred CCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-C-eEEEEE-CCCc
Q 006825 514 EPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-Q-HLLSSS-MDKT 589 (630)
Q Consensus 514 dg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~-~LaSgS-~Dgt 589 (630)
+++.+......+.- |... ...+.+ .+++. +++.+..+.- ...+..|+|+|| + +|+... .++.
T Consensus 258 dg~~lyV~~~~~~~--~thk--------~~~~~V---~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~ 323 (352)
T TIGR02658 258 ARDRIYLLADQRAK--WTHK--------TASRFL---FVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKT 323 (352)
T ss_pred CCCEEEEEecCCcc--cccc--------CCCCEE---EEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCc
Confidence 98887774322110 0000 000111 55566 6777777652 347899999999 6 666555 6899
Q ss_pred EEEEeCCCCcEEEEEe
Q 006825 590 VRLWHLSSKTCLKIFS 605 (630)
Q Consensus 590 VrIWDl~tg~~l~t~~ 605 (630)
|.+.|+.+++.++++.
T Consensus 324 VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 324 LYIFDAETGKELSSVN 339 (352)
T ss_pred EEEEECcCCeEEeeec
Confidence 9999999999999884
No 261
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.34 E-value=1.7e-05 Score=83.17 Aligned_cols=166 Identities=14% Similarity=0.212 Sum_probs=116.8
Q ss_pred ccCCcceEEEeecCCCe-EEEecCCcEEEEEeCCCCcccceeeeeEeccc-----CcCEEEEEEcc-CCCEEEEEeCCCc
Q 006825 407 EKGGRRSSSATDDSQDV-SFHGQERVRVRQYGKSCKDLTALYKCQEIQAH-----NGSIWSIKFSL-DGRYLASAGEDCV 479 (630)
Q Consensus 407 ~~gh~~~Vsa~~~s~d~-l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gH-----t~~V~sVaFSp-DG~~LASgS~Dgt 479 (630)
...|..-|.++.+..|. .+-...|-+|-+|.+.-.+ .-+.+-.++.| +..|++..|+| ..++|+-.+.-|+
T Consensus 160 aNaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d--~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGt 237 (433)
T KOG1354|consen 160 ANAHTYHINSISVNSDKETFLSADDLRINLWNLEIID--QSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGT 237 (433)
T ss_pred cccceeEeeeeeecCccceEeeccceeeeeccccccC--CceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCc
Confidence 45688889999999998 7777889999999885432 22344445554 46799999999 5667777888999
Q ss_pred EEEEECcCCcee---eeeeccc--------ccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCcccc
Q 006825 480 IHVWQVVESERK---GELLEKQ--------EDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVV 548 (630)
Q Consensus 480 IrVWDl~tg~~~---~~l~~~~--------~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~ 548 (630)
|||-|++..... ..++..+ +.+-...|..+.|++.|+++++- .--+|
T Consensus 238 IrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsR-Dyltv--------------------- 295 (433)
T KOG1354|consen 238 IRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSR-DYLTV--------------------- 295 (433)
T ss_pred EEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEe-cccee---------------------
Confidence 999999743211 1111000 12223457789999999999875 22456
Q ss_pred ccEEEeC--CCCceEEeccCCC------------CE---EEEEEcCC-CeEEEEECCCcEEEEeCCCC
Q 006825 549 PETVFAL--SDKPICSFQGHLD------------DV---LDLSWSKS-QHLLSSSMDKTVRLWHLSSK 598 (630)
Q Consensus 549 ~~~Vwdl--sgk~l~tL~GHs~------------~V---~sLafSPd-~~LaSgS~DgtVrIWDl~tg 598 (630)
++|++ ..+++.++.-|.. .| .-++|+.+ .+++|||....++++++..|
T Consensus 296 --k~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 296 --KLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred --EEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 66776 4566666665532 22 35789988 99999999999999996654
No 262
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.27 E-value=1.2e-05 Score=84.21 Aligned_cols=240 Identities=15% Similarity=0.125 Sum_probs=147.2
Q ss_pred ccCCEEEEEEcCCCCeEEeecCCC------CCcc----------ccCCc------------ceEEEeecCCCe----EEE
Q 006825 379 WFKSIRTVASSVTGHKERRSSDER------DTSS----------EKGGR------------RSSSATDDSQDV----SFH 426 (630)
Q Consensus 379 H~~~V~sVAfSpdG~~lasgS~D~------dt~s----------~~gh~------------~~Vsa~~~s~d~----l~S 426 (630)
-..-|.+|-|...|.+|++|..++ ++.. +..|. -.|..+...+++ +..
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 345678899999999999998776 1110 11110 112233333332 566
Q ss_pred ecCCcEEEEEeCCCCcccc------------------e------------eeeeEe-cccCcCEEEEEEccCCCEEEEEe
Q 006825 427 GQERVRVRQYGKSCKDLTA------------------L------------YKCQEI-QAHNGSIWSIKFSLDGRYLASAG 475 (630)
Q Consensus 427 gs~Dg~VriWd~~~~el~~------------------~------------~~v~tL-~gHt~~V~sVaFSpDG~~LASgS 475 (630)
...|.+|++|.+..+.... + .+.+.+ .+|+-.|++|.++.|+..++|+
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA- 182 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA- 182 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-
Confidence 7789999999876543222 0 111222 4699999999999999999985
Q ss_pred CCCcEEEEECcCCceeeeee-ccc--ccCcccceEEEEECCC-CCEEEEeeCCCeeeeecccccccccccccCccccccE
Q 006825 476 EDCVIHVWQVVESERKGELL-EKQ--EDGHLNMLLLANGSPE-PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPET 551 (630)
Q Consensus 476 ~DgtIrVWDl~tg~~~~~l~-~~~--~~gh~~~V~svafSpd-g~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~ 551 (630)
.|-.|-+|+++-......+. .++ ...-...|++..|+|. ...++..+..|+|++.+...... .+.. .+
T Consensus 183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aL-----Cd~h---sK 254 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSAL-----CDAH---SK 254 (433)
T ss_pred cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhh-----hcch---hh
Confidence 57889999986443332222 111 1122346788899997 67888888999997666442100 0000 02
Q ss_pred EEeCCCC--ceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeC-CCCcEEEEEe-cC------------Cce----
Q 006825 552 VFALSDK--PICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHL-SSKTCLKIFS-HS------------DYD---- 610 (630)
Q Consensus 552 Vwdlsgk--~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl-~tg~~l~t~~-H~------------~~V---- 610 (630)
+|..... ...-|.+--..|.++.|+++ .|+++=. =-+|+|||+ ...+++.+++ |. +.|
T Consensus 255 lfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKF 333 (433)
T KOG1354|consen 255 LFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKF 333 (433)
T ss_pred hhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhhee
Confidence 3332111 11113334456899999999 7777643 269999999 5677788877 52 223
Q ss_pred EEEEcCCCcEEEEeccee
Q 006825 611 ISLVDRLMLRFAYGAFLN 628 (630)
Q Consensus 611 ~sVas~~~~~lAsgs~~n 628 (630)
.|..+.++..+.+|++-|
T Consensus 334 ec~~sg~~~~v~TGsy~n 351 (433)
T KOG1354|consen 334 ECSWSGNDSYVMTGSYNN 351 (433)
T ss_pred EEEEcCCcceEecccccc
Confidence 233377788888888755
No 263
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.27 E-value=3e-06 Score=102.80 Aligned_cols=148 Identities=13% Similarity=0.128 Sum_probs=108.2
Q ss_pred eEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCc
Q 006825 423 VSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGH 502 (630)
Q Consensus 423 ~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh 502 (630)
+.++|+.||.|++|....++. ..+-++ -|. ..|+.+.|+.+|+.+..+-.||.+.+|.+.. +.... ...|
T Consensus 2222 ~Yltgs~dgsv~~~~w~~~~~--v~~~rt-~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p-k~~~s-----~qch 2291 (2439)
T KOG1064|consen 2222 YYLTGSQDGSVRMFEWGHGQQ--VVCFRT-AGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQASP-KPYTS-----WQCH 2291 (2439)
T ss_pred eEEecCCCceEEEEeccCCCe--EEEeec-cCc-chhhhhhhcccCCceeeeccCCceeecccCC-cceec-----cccC
Confidence 368999999999998876642 222222 233 8899999999999999999999999999872 11111 3567
Q ss_pred ccceEEEEECCCCCEEEEee---CCCeeeeecccccccccccccCccccccEEEeC--CCCceEEeccCCCCEEEEEEcC
Q 006825 503 LNMLLLANGSPEPTSLSPKH---LDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL--SDKPICSFQGHLDDVLDLSWSK 577 (630)
Q Consensus 503 ~~~V~svafSpdg~~lasgs---~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl--sgk~l~tL~GHs~~V~sLafSP 577 (630)
......+.|-. ..+++++ .++.+ .+||. .+..-..-..|.+.++++++.|
T Consensus 2292 nk~~~Df~Fi~--s~~~tag~s~d~~n~-----------------------~lwDtl~~~~~s~v~~~H~~gaT~l~~~P 2346 (2439)
T KOG1064|consen 2292 NKALSDFRFIG--SLLATAGRSSDNRNV-----------------------CLWDTLLPPMNSLVHTCHDGGATVLAYAP 2346 (2439)
T ss_pred Cccccceeeee--hhhhccccCCCCCcc-----------------------cchhcccCcccceeeeecCCCceEEEEcC
Confidence 66666666654 4555543 34455 55554 2222122278999999999999
Q ss_pred C-CeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825 578 S-QHLLSSSMDKTVRLWHLSSKTCLKIFS 605 (630)
Q Consensus 578 d-~~LaSgS~DgtVrIWDl~tg~~l~t~~ 605 (630)
. ++|+||+.+|.|+|||++..+++++|+
T Consensus 2347 ~~qllisggr~G~v~l~D~rqrql~h~~~ 2375 (2439)
T KOG1064|consen 2347 KHQLLISGGRKGEVCLFDIRQRQLRHTFQ 2375 (2439)
T ss_pred cceEEEecCCcCcEEEeehHHHHHHHHhh
Confidence 9 999999999999999999888877775
No 264
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.25 E-value=4.5e-05 Score=78.57 Aligned_cols=154 Identities=19% Similarity=0.284 Sum_probs=109.7
Q ss_pred EEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc-CCCEEEEEeCCCcEEEEECcCCcee
Q 006825 415 SATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVESERK 491 (630)
Q Consensus 415 sa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp-DG~~LASgS~DgtIrVWDl~tg~~~ 491 (630)
.+++++..+ ++++-.+|.+.+-+... ..+..+|++++|.-.+|...|+. +.+++.|||.|+.+..||++-..
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~---~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~-- 199 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETE---MVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK-- 199 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecce---eeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc--
Confidence 344444433 78888888887443322 23446789999999999999987 66799999999999999998322
Q ss_pred eeeecccccCcccceEEEEECC-CCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC--CCCceEEeccCCC
Q 006825 492 GELLEKQEDGHLNMLLLANGSP-EPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL--SDKPICSFQGHLD 568 (630)
Q Consensus 492 ~~l~~~~~~gh~~~V~svafSp-dg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl--sgk~l~tL~GHs~ 568 (630)
+++.....-|...|.++.-+| .+.+|++|+.|..| ++|+. -++++..-. -.+
T Consensus 200 -~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i-----------------------~~~DtRnm~kPl~~~~-v~G 254 (339)
T KOG0280|consen 200 -TFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECI-----------------------RVLDTRNMGKPLFKAK-VGG 254 (339)
T ss_pred -ceeeecceeeecceEEEecCCCCCceEEEeccccce-----------------------eeeehhcccCccccCc-ccc
Confidence 222222356777888887776 48899999999999 55555 245544322 237
Q ss_pred CEEEEEEcCC--CeEEEEECCCcEEEEeCCCC
Q 006825 569 DVLDLSWSKS--QHLLSSSMDKTVRLWHLSSK 598 (630)
Q Consensus 569 ~V~sLafSPd--~~LaSgS~DgtVrIWDl~tg 598 (630)
.|+.+.++|. ..|+.+++-.-.+|-++..+
T Consensus 255 GVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~ 286 (339)
T KOG0280|consen 255 GVWRIKHHPEIFHRLLAACMHNGAKILDSSDK 286 (339)
T ss_pred ceEEEEecchhhhHHHHHHHhcCceEEEeccc
Confidence 7899999996 56677777777888887764
No 265
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.18 E-value=0.00074 Score=74.84 Aligned_cols=234 Identities=12% Similarity=0.066 Sum_probs=139.5
Q ss_pred CccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC---------CCccccCCcceEEEeecCCCe-----
Q 006825 358 SFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER---------DTSSEKGGRRSSSATDDSQDV----- 423 (630)
Q Consensus 358 ~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~---------dt~s~~gh~~~Vsa~~~s~d~----- 423 (630)
..++ +|+++++.....+....... .+..|+.|..+.+.-.... .+...+=|...++...+++..
T Consensus 105 pn~~-v~~vet~~~~s~~q~k~Q~~-W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~v 182 (566)
T KOG2315|consen 105 PNVL-VYNVETGVQRSQIQKKMQNG-WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFV 182 (566)
T ss_pred Ccee-eeeeccceehhheehhhhcC-cccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceE
Confidence 3456 89999865544333212221 3577888765433321111 112233344555666666552
Q ss_pred -EE---EecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCC---EEEEEeCCC---------cEEEEECcC
Q 006825 424 -SF---HGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGR---YLASAGEDC---------VIHVWQVVE 487 (630)
Q Consensus 424 -l~---Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~---~LASgS~Dg---------tIrVWDl~t 487 (630)
++ .++.-..||+|.............++|- ...=..+.|++-|+ +|++.--|+ ++++.++..
T Consensus 183 AvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF--kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g 260 (566)
T KOG2315|consen 183 AVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF--KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQG 260 (566)
T ss_pred EEEccCCCCCCcEEEEeccccccccchhhhcccc--ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecC
Confidence 22 2345567999976522211111112221 11123577887665 344444444 688888873
Q ss_pred CceeeeeecccccCcccceEEEEECCCCCEEEEe--eCCCeeeeecccccccccccccCccccccEEEeCCCCceEEecc
Q 006825 488 SERKGELLEKQEDGHLNMLLLANGSPEPTSLSPK--HLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQG 565 (630)
Q Consensus 488 g~~~~~l~~~~~~gh~~~V~svafSpdg~~lasg--s~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~G 565 (630)
..+.-. -...++|.++.|+|+++-++.. -.-..+ .||++.+.++..|.
T Consensus 261 ~s~~V~------L~k~GPVhdv~W~~s~~EF~VvyGfMPAkv-----------------------tifnlr~~~v~df~- 310 (566)
T KOG2315|consen 261 ESVSVP------LLKEGPVHDVTWSPSGREFAVVYGFMPAKV-----------------------TIFNLRGKPVFDFP- 310 (566)
T ss_pred ceEEEe------cCCCCCceEEEECCCCCEEEEEEecccceE-----------------------EEEcCCCCEeEeCC-
Confidence 333333 2345899999999999877664 222333 78999999988874
Q ss_pred CCCCEEEEEEcCC-CeEEEEECC---CcEEEEeCCCCcEEEEEecCCceEEEEcCCCcEEEEecc
Q 006825 566 HLDDVLDLSWSKS-QHLLSSSMD---KTVRLWHLSSKTCLKIFSHSDYDISLVDRLMLRFAYGAF 626 (630)
Q Consensus 566 Hs~~V~sLafSPd-~~LaSgS~D---gtVrIWDl~tg~~l~t~~H~~~V~sVas~~~~~lAsgs~ 626 (630)
.++=+++-|+|. ++|+-++.+ |.|-|||+.+.+++..+.-.+...+-=+|++.+|.++..
T Consensus 311 -egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTATT 374 (566)
T KOG2315|consen 311 -EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTATT 374 (566)
T ss_pred -CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCceEEEEcCCCcEEEEEec
Confidence 345578999999 888777764 799999999999999887444433322888888887753
No 266
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.14 E-value=0.0057 Score=62.16 Aligned_cols=227 Identities=11% Similarity=0.038 Sum_probs=131.9
Q ss_pred EEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCccceeEEEee-c--ceEeecCCCccEecccCCCC
Q 006825 293 CLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRR-Q--NVEEGNKDSFDLNNNGSSGG 369 (630)
Q Consensus 293 ~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs-~--~laSgS~D~tvr~vWD~~tG 369 (630)
.-+|+-++|..|.+.-.+ ....-++..+++...++ +.+ ...+++. + .+..+...+. . +.|..+|
T Consensus 4 gp~~d~~~g~l~~~D~~~---~~i~~~~~~~~~~~~~~----~~~----~~G~~~~~~~g~l~v~~~~~~-~-~~d~~~g 70 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPG---GRIYRVDPDTGEVEVID----LPG----PNGMAFDRPDGRLYVADSGGI-A-VVDPDTG 70 (246)
T ss_dssp EEEEETTTTEEEEEETTT---TEEEEEETTTTEEEEEE----SSS----EEEEEEECTTSEEEEEETTCE-E-EEETTTT
T ss_pred ceEEECCCCEEEEEEcCC---CEEEEEECCCCeEEEEe----cCC----CceEEEEccCCEEEEEEcCce-E-EEecCCC
Confidence 445666677666665432 12334555565554211 111 4455555 3 4444444444 4 5588888
Q ss_pred ceeEEecC---C-ccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccc
Q 006825 370 GMKSKKKG---S-WFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTA 445 (630)
Q Consensus 370 ~~~~~lk~---g-H~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~ 445 (630)
+....... . .....+.+++.++|.+.++......... ...+.|..++.. ++
T Consensus 71 ~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~---------------------~~~g~v~~~~~~-~~--- 125 (246)
T PF08450_consen 71 KVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASG---------------------IDPGSVYRIDPD-GK--- 125 (246)
T ss_dssp EEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTC---------------------GGSEEEEEEETT-SE---
T ss_pred cEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCcccc---------------------ccccceEEECCC-Ce---
Confidence 65444431 2 5567789999999997765433220000 000456666655 32
Q ss_pred eeeeeEecccCcCEEEEEEccCCCEEE-EEeCCCcEEEEECcCCce-ee--eeecccccCcccceEEEEECCCCCEEEEe
Q 006825 446 LYKCQEIQAHNGSIWSIKFSLDGRYLA-SAGEDCVIHVWQVVESER-KG--ELLEKQEDGHLNMLLLANGSPEPTSLSPK 521 (630)
Q Consensus 446 ~~~v~tL~gHt~~V~sVaFSpDG~~LA-SgS~DgtIrVWDl~tg~~-~~--~l~~~~~~gh~~~V~svafSpdg~~lasg 521 (630)
+..+...-..-+.|+|+||++.|+ +-+..+.|..+++..... +. ..+ .......+..-.+++..+|.++++.
T Consensus 126 ---~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~g~pDG~~vD~~G~l~va~ 201 (246)
T PF08450_consen 126 ---VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVF-IDFPGGPGYPDGLAVDSDGNLWVAD 201 (246)
T ss_dssp ---EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEE-EE-SSSSCEEEEEEEBTTS-EEEEE
T ss_pred ---EEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeE-EEcCCCCcCCCcceEcCCCCEEEEE
Confidence 122223345678999999998665 667788899888863322 11 111 1112222346789999999998888
Q ss_pred eCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEc-CC--CeEEEE
Q 006825 522 HLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWS-KS--QHLLSS 584 (630)
Q Consensus 522 s~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafS-Pd--~~LaSg 584 (630)
...+.| .+++..|+.+..+.-....+++++|. ++ .+++|.
T Consensus 202 ~~~~~I-----------------------~~~~p~G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 202 WGGGRI-----------------------VVFDPDGKLLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp ETTTEE-----------------------EEEETTSCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred cCCCEE-----------------------EEECCCccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 777777 77888899888887666689999995 55 455554
No 267
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.13 E-value=3.6e-05 Score=81.99 Aligned_cols=115 Identities=14% Similarity=0.098 Sum_probs=84.3
Q ss_pred cceEEEeecCCCe-EE-EecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCC
Q 006825 411 RRSSSATDDSQDV-SF-HGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVES 488 (630)
Q Consensus 411 ~~~Vsa~~~s~d~-l~-Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg 488 (630)
...++++.+...+ ++ ..++...+.+|..... +...+.||-..++.|+|+||+++|+|+..|..|||=.....
T Consensus 110 ~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~------~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~ 183 (390)
T KOG3914|consen 110 PTAISFIREDTSVLVADKAGDVYSFDILSADSG------RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPAT 183 (390)
T ss_pred cceeeeeeccceEEEEeecCCceeeeeeccccc------CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcc
Confidence 3455555555555 22 3444566777765422 34557899999999999999999999999999999877665
Q ss_pred ceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccc
Q 006825 489 ERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSI 536 (630)
Q Consensus 489 ~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~ 536 (630)
..+..+ .-||...|..++.-++ ..|++++.|+++++|+.....
T Consensus 184 f~Iesf----clGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk 226 (390)
T KOG3914|consen 184 FVIESF----CLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSGK 226 (390)
T ss_pred cchhhh----ccccHhheeeeeeccC-ceeeecCCCCcEEEEecccCC
Confidence 555555 5799999999998765 458999999999555554433
No 268
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.11 E-value=5.4e-06 Score=93.41 Aligned_cols=120 Identities=23% Similarity=0.404 Sum_probs=93.3
Q ss_pred EecccCcCEEEEEEccC-CCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeee
Q 006825 451 EIQAHNGSIWSIKFSLD-GRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529 (630)
Q Consensus 451 tL~gHt~~V~sVaFSpD-G~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i 529 (630)
.+-||..+|+.+.|+|. ...||+++.|-.++.||++........ ..........|.|+.....+.+.+....|
T Consensus 109 ~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys----~~~w~s~asqVkwnyk~p~vlasshg~~i-- 182 (1081)
T KOG0309|consen 109 VLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYS----TSSWRSAASQVKWNYKDPNVLASSHGNDI-- 182 (1081)
T ss_pred EEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceee----eecccccCceeeecccCcchhhhccCCce--
Confidence 36799999999999995 458999999999999999876543222 23333445567777654444444455555
Q ss_pred ecccccccccccccCccccccEEEeC--CCCceEEeccCCCCEEEEEEcCC--CeEEEEECCCcEEEEeCCC
Q 006825 530 KRRGRSINRKSLSLDHMVVPETVFAL--SDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSS 597 (630)
Q Consensus 530 ~~~~~~~~~~s~s~d~~i~~~~Vwdl--sgk~l~tL~GHs~~V~sLafSPd--~~LaSgS~DgtVrIWDl~t 597 (630)
.+|+. .+.+++.+++|...|+.+.|..- ..+.+.++|++|+.||...
T Consensus 183 ---------------------~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~k 233 (1081)
T KOG0309|consen 183 ---------------------FVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSK 233 (1081)
T ss_pred ---------------------EEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccc
Confidence 78887 56899999999999999999875 8899999999999999864
No 269
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.09 E-value=8.7e-05 Score=77.91 Aligned_cols=189 Identities=15% Similarity=0.147 Sum_probs=127.8
Q ss_pred CeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccC
Q 006825 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG 501 (630)
Q Consensus 422 d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~g 501 (630)
+++++.+.|.++|+|-..... ++-......-..++.++.+.++.+.|+.|-..|++.-+.+...-....+ ......
T Consensus 37 ~gv~~~s~drtvrv~lkrds~---q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~-~r~~~~ 112 (404)
T KOG1409|consen 37 EGVISVSEDRTVRVWLKRDSG---QYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTF-LKDYLA 112 (404)
T ss_pred CCeEEccccceeeeEEecccc---ccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcch-hhhhhh
Confidence 458899999999999654321 1111111223467899999999999999999999999887654333222 233578
Q ss_pred cccceEEEEECCCCCEEEEeeCCCeeeeecccc--cccccc-----cccCc------------cccccEEEeCCCCceEE
Q 006825 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGR--SINRKS-----LSLDH------------MVVPETVFALSDKPICS 562 (630)
Q Consensus 502 h~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~--~~~~~s-----~s~d~------------~i~~~~Vwdlsgk~l~t 562 (630)
|...++.+-|+-....+++.+.|..+...-... ...... ...+. .+...++....-.++.+
T Consensus 113 h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~ 192 (404)
T KOG1409|consen 113 HQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITT 192 (404)
T ss_pred hhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEE
Confidence 999999999998889999998888764322111 111110 00010 11111222223357788
Q ss_pred eccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEE--EEEecCCceEEEE
Q 006825 563 FQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCL--KIFSHSDYDISLV 614 (630)
Q Consensus 563 L~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l--~t~~H~~~V~sVa 614 (630)
+.+|.+.|++++|.|. ++|.+|..|..|-+||+.-.+-+ ..+.|.+.|..+.
T Consensus 193 ~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~ 247 (404)
T KOG1409|consen 193 FNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALS 247 (404)
T ss_pred EcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhh
Confidence 9999999999999998 99999999999999999754433 2333888887776
No 270
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.99 E-value=0.0016 Score=70.53 Aligned_cols=224 Identities=8% Similarity=-0.045 Sum_probs=116.4
Q ss_pred ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC------CCcc----ccCCcceE-----
Q 006825 350 NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER------DTSS----EKGGRRSS----- 414 (630)
Q Consensus 350 ~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~------dt~s----~~gh~~~V----- 414 (630)
.+..++.++.+. .+|..+|+.+-+...+ ..+.+.....++..++...+.. .++. ........
T Consensus 107 ~v~v~~~~g~l~-ald~~tG~~~W~~~~~--~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~ 183 (377)
T TIGR03300 107 LVFVGTEKGEVI-ALDAEDGKELWRAKLS--SEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGS 183 (377)
T ss_pred EEEEEcCCCEEE-EEECCCCcEeeeeccC--ceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCC
Confidence 566778889998 9999999987765522 2222111112333333222211 1111 00000000
Q ss_pred EEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCc--CEEEEEEcc--CCCEEEEEeCCCcEEEEECcCCce
Q 006825 415 SATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNG--SIWSIKFSL--DGRYLASAGEDCVIHVWQVVESER 490 (630)
Q Consensus 415 sa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~--~V~sVaFSp--DG~~LASgS~DgtIrVWDl~tg~~ 490 (630)
.........++.+..++++..+|..+++..-........+... .+..+.-+| .+..++.++.++.+..||..+++.
T Consensus 184 ~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~ 263 (377)
T TIGR03300 184 ASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRV 263 (377)
T ss_pred CCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcE
Confidence 0001112346778888999999987775311100000001100 001111111 355777788999999999999987
Q ss_pred eeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCC-
Q 006825 491 KGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLD- 568 (630)
Q Consensus 491 ~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~- 568 (630)
+.... .... .... ..+..++.+..++.+ ..++. +|+.+..+.....
T Consensus 264 ~W~~~---~~~~----~~p~--~~~~~vyv~~~~G~l-----------------------~~~d~~tG~~~W~~~~~~~~ 311 (377)
T TIGR03300 264 LWKRD---ASSY----QGPA--VDDNRLYVTDADGVV-----------------------VALDRRSGSELWKNDELKYR 311 (377)
T ss_pred EEeec---cCCc----cCce--EeCCEEEEECCCCeE-----------------------EEEECCCCcEEEccccccCC
Confidence 65531 1111 1111 134556666677777 44444 4444433321111
Q ss_pred CEEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEe-cCCc
Q 006825 569 DVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDY 609 (630)
Q Consensus 569 ~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~ 609 (630)
.+...... +++|+.++.||.|++||..+|+.+..++ +...
T Consensus 312 ~~ssp~i~-g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~ 352 (377)
T TIGR03300 312 QLTAPAVV-GGYLVVGDFEGYLHWLSREDGSFVARLKTDGSG 352 (377)
T ss_pred ccccCEEE-CCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCc
Confidence 11121221 2788899999999999999999999988 5543
No 271
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.96 E-value=0.0034 Score=77.21 Aligned_cols=163 Identities=10% Similarity=0.041 Sum_probs=93.8
Q ss_pred EEEEEEcc-CCCEEEEEeCCCcEEEEECcCCceeeeeecc----cccC------cccceEEEEECCCCC-EEEEeeCCCe
Q 006825 459 IWSIKFSL-DGRYLASAGEDCVIHVWQVVESERKGELLEK----QEDG------HLNMLLLANGSPEPT-SLSPKHLDNH 526 (630)
Q Consensus 459 V~sVaFSp-DG~~LASgS~DgtIrVWDl~tg~~~~~l~~~----~~~g------h~~~V~svafSpdg~-~lasgs~Dg~ 526 (630)
-+.|+|+| ++.++++...++.|++||..++... .+... ...+ .......++++|++. ++++...++.
T Consensus 685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~ 763 (1057)
T PLN02919 685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSS 763 (1057)
T ss_pred CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCe
Confidence 36899999 6777788888999999999876532 11100 0011 112345799999987 5566667788
Q ss_pred eeeecccccccccccccCcccccc---EEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEE
Q 006825 527 LEKKRRGRSINRKSLSLDHMVVPE---TVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLK 602 (630)
Q Consensus 527 I~i~~~~~~~~~~s~s~d~~i~~~---~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~ 602 (630)
|++++............+.. .+. .+++..+.... ..-..-..++|+++ .++++-+.+++|++||..++.+..
T Consensus 764 Irv~D~~tg~~~~~~gg~~~-~~~~l~~fG~~dG~g~~---~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~t 839 (1057)
T PLN02919 764 IRALDLKTGGSRLLAGGDPT-FSDNLFKFGDHDGVGSE---VLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTT 839 (1057)
T ss_pred EEEEECCCCcEEEEEecccc-cCcccccccCCCCchhh---hhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEE
Confidence 87776543211000000000 000 01111110000 01112358899998 788889999999999999887664
Q ss_pred EEec--------------CCceEEEE-cCCCcEEEEecc
Q 006825 603 IFSH--------------SDYDISLV-DRLMLRFAYGAF 626 (630)
Q Consensus 603 t~~H--------------~~~V~sVa-s~~~~~lAsgs~ 626 (630)
.... -.....|+ ++++..++++..
T Consensus 840 iaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~ 878 (1057)
T PLN02919 840 LAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTN 878 (1057)
T ss_pred EeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECC
Confidence 4331 12456677 667776666543
No 272
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.96 E-value=3e-05 Score=81.34 Aligned_cols=159 Identities=14% Similarity=0.148 Sum_probs=115.6
Q ss_pred EEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCccc
Q 006825 425 FHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLN 504 (630)
Q Consensus 425 ~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~ 504 (630)
++.+.+-.|-+-++.++ ..+.|. -++-|.++.|.-.+++|.-|...|.|-+.|++.+..-.... ...--|..
T Consensus 228 fs~G~sqqv~L~nvetg------~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~-a~rlyh~S 299 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETG------HQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWC-AQRLYHDS 299 (425)
T ss_pred ecccccceeEEEEeecc------cccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcc-eEEEEcCc
Confidence 44556667888888776 233444 66779999999999999999999999999998652111100 00134667
Q ss_pred ceEEEEECC-CCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC----CCCceEEeccCCCCEEEEEEc--C
Q 006825 505 MLLLANGSP-EPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL----SDKPICSFQGHLDDVLDLSWS--K 577 (630)
Q Consensus 505 ~V~svafSp-dg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl----sgk~l~tL~GHs~~V~sLafS--P 577 (630)
.|+++..-. ++.+|.+.+.+|+| ++||. .++-+.+++||...-.-+-++ +
T Consensus 300 svtslq~Lq~s~q~LmaS~M~gki-----------------------kLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~ 356 (425)
T KOG2695|consen 300 SVTSLQILQFSQQKLMASDMTGKI-----------------------KLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKE 356 (425)
T ss_pred chhhhhhhccccceEeeccCcCce-----------------------eEeeehhhhcccceeeeeccccccccccccccc
Confidence 777777655 67888888899999 77776 234599999997655444443 4
Q ss_pred C-CeEEEEECCCcEEEEeCCCCcEEEEEec-----CCceEEEE
Q 006825 578 S-QHLLSSSMDKTVRLWHLSSKTCLKIFSH-----SDYDISLV 614 (630)
Q Consensus 578 d-~~LaSgS~DgtVrIWDl~tg~~l~t~~H-----~~~V~sVa 614 (630)
. +.+++++.|...|||.+..|.++.+++- ..-+++++
T Consensus 357 eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~ 399 (425)
T KOG2695|consen 357 EEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVA 399 (425)
T ss_pred ccceEEEccCeeEEEEEecccCceeeccCCCCcccccccccee
Confidence 4 8999999999999999999999999872 22445566
No 273
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.93 E-value=0.013 Score=59.56 Aligned_cols=191 Identities=9% Similarity=0.008 Sum_probs=112.3
Q ss_pred ecCCCccEecccCCCCceeEEecCCccCCEEEEEEc-CCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcE
Q 006825 354 GNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASS-VTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVR 432 (630)
Q Consensus 354 gS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfS-pdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~ 432 (630)
--..+.+. .|+..++........+ ...+++. ++|.++++. . ..
T Consensus 18 D~~~~~i~-~~~~~~~~~~~~~~~~----~~G~~~~~~~g~l~v~~------------------------------~-~~ 61 (246)
T PF08450_consen 18 DIPGGRIY-RVDPDTGEVEVIDLPG----PNGMAFDRPDGRLYVAD------------------------------S-GG 61 (246)
T ss_dssp ETTTTEEE-EEETTTTEEEEEESSS----EEEEEEECTTSEEEEEE------------------------------T-TC
T ss_pred EcCCCEEE-EEECCCCeEEEEecCC----CceEEEEccCCEEEEEE------------------------------c-Cc
Confidence 33445666 6777776554322211 5566666 565544432 2 22
Q ss_pred EEEEeCCCCcccceeeeeEe--cc-cCcCEEEEEEccCCCEEEEEeCC--------CcEEEEECcCCceeeeeecccccC
Q 006825 433 VRQYGKSCKDLTALYKCQEI--QA-HNGSIWSIKFSLDGRYLASAGED--------CVIHVWQVVESERKGELLEKQEDG 501 (630)
Q Consensus 433 VriWd~~~~el~~~~~v~tL--~g-Ht~~V~sVaFSpDG~~LASgS~D--------gtIrVWDl~tg~~~~~l~~~~~~g 501 (630)
+.++|..+++...+ ..+ .. .....+.+++.|+|++.++-... +.|..++.. ++ +..+ ..
T Consensus 62 ~~~~d~~~g~~~~~---~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~-~~~~-----~~ 131 (246)
T PF08450_consen 62 IAVVDPDTGKVTVL---ADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK-VTVV-----AD 131 (246)
T ss_dssp EEEEETTTTEEEEE---EEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE-EEEE-----EE
T ss_pred eEEEecCCCcEEEE---eeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce-EEEE-----ec
Confidence 45557766644322 222 22 34568999999999988886644 446666665 33 2222 22
Q ss_pred cccceEEEEECCCCCEEE-EeeCCCeeeeecccccccccccccCccccccEEEeC--CCC------ceEEeccCCCCEEE
Q 006825 502 HLNMLLLANGSPEPTSLS-PKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL--SDK------PICSFQGHLDDVLD 572 (630)
Q Consensus 502 h~~~V~svafSpdg~~la-sgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl--sgk------~l~tL~GHs~~V~s 572 (630)
.......++|+|+++.|+ +-+..+.| ..+++ .+. .+..+.+-.+..-.
T Consensus 132 ~~~~pNGi~~s~dg~~lyv~ds~~~~i-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG 188 (246)
T PF08450_consen 132 GLGFPNGIAFSPDGKTLYVADSFNGRI-----------------------WRFDLDADGGELSNRRVFIDFPGGPGYPDG 188 (246)
T ss_dssp EESSEEEEEEETTSSEEEEEETTTTEE-----------------------EEEEEETTTCCEEEEEEEEE-SSSSCEEEE
T ss_pred CcccccceEECCcchheeeccccccee-----------------------EEEeccccccceeeeeeEEEcCCCCcCCCc
Confidence 235567899999998665 45555555 22332 121 11222222234678
Q ss_pred EEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE
Q 006825 573 LSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV 614 (630)
Q Consensus 573 LafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa 614 (630)
+++..+ .++++.-..+.|.+++.. |+.+..+. -...+++++
T Consensus 189 ~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~ 231 (246)
T PF08450_consen 189 LAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCA 231 (246)
T ss_dssp EEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEE
T ss_pred ceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEE
Confidence 999988 666777778999999987 99999888 445888888
No 274
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.87 E-value=0.0018 Score=71.28 Aligned_cols=296 Identities=14% Similarity=0.102 Sum_probs=163.4
Q ss_pred CCccccccCCCceeecCCCCcccCCCccccccCCC--CCcccccccEEEEECCCCcEEEEeeecCCC--ceeEEEEcC--
Q 006825 249 NCKRMDESRGDSMSINGNGNYIGNSGEVVEDFDGN--GTAGVAEQGCLIKNLDNGKEFVVNEIQEDG--TWKKVKEVG-- 322 (630)
Q Consensus 249 ~~~~~d~~~~~~~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~I~~LddG~~~~v~e~~~dg--~~~~l~dv~-- 322 (630)
.|.+|=...---+-|||+++||+.-+.-.-+ .|. +..--..+.|.|||...|..+....+-.-- .|..++=..
T Consensus 65 ~l~~~~~~~V~~~~fSP~~kYL~tw~~~pi~-~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D 143 (561)
T COG5354 65 KLVRFRHPDVKYLDFSPNEKYLVTWSREPII-EPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDD 143 (561)
T ss_pred heeeeecCCceecccCcccceeeeeccCCcc-ChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecc
Confidence 4555544444446899999999776632110 000 011122236899999999765543331111 231111111
Q ss_pred ------CCceEeeec---------ceeeecCccceeEEEeecc-----eEe-----ecCCCccEecccCCCCceeEEecC
Q 006825 323 ------TGRQLTIEE---------FEMCVGHSPIVQELMRRQN-----VEE-----GNKDSFDLNNNGSSGGGMKSKKKG 377 (630)
Q Consensus 323 ------TG~~lt~ee---------f~~l~GHs~~V~~Lafs~~-----laS-----gS~D~tvr~vWD~~tG~~~~~lk~ 377 (630)
-|..|.+.| |..+. ..-|+...++|- ||. +..+.+++ +|.+-.+..+.+...
T Consensus 144 ~y~ARvv~~sl~i~e~t~n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~-i~sIp~~s~l~tk~l 220 (561)
T COG5354 144 KYVARVVGSSLYIHEITDNIEEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVR-ILSIPKNSVLVTKNL 220 (561)
T ss_pred hhhhhhccCeEEEEecCCccccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEE-EEEccCCCeeeeeee
Confidence 122222222 22222 233455556652 222 45567777 777765555444332
Q ss_pred CccCCEEEEEEcCCCCeEEeec---C--CC----------------CCccccCCcceEEEeecCCCe----EEEecCCcE
Q 006825 378 SWFKSIRTVASSVTGHKERRSS---D--ER----------------DTSSEKGGRRSSSATDDSQDV----SFHGQERVR 432 (630)
Q Consensus 378 gH~~~V~sVAfSpdG~~lasgS---~--D~----------------dt~s~~gh~~~Vsa~~~s~d~----l~Sgs~Dg~ 432 (630)
--.+.+ .+.|.+.|++|.--- . .+ +..-+++-...|....+.+.. +++|..+.+
T Consensus 221 fk~~~~-qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~ 299 (561)
T COG5354 221 FKVSGV-QLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPAS 299 (561)
T ss_pred Eeeccc-EEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccc
Confidence 122233 266777777643211 0 01 111133445566666665443 788889999
Q ss_pred EEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCC---CcEEEEECcCCceee-eeecccccCcccceEE
Q 006825 433 VRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED---CVIHVWQVVESERKG-ELLEKQEDGHLNMLLL 508 (630)
Q Consensus 433 VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~D---gtIrVWDl~tg~~~~-~l~~~~~~gh~~~V~s 508 (630)
+-++|+... + .+..-...=+.+-|+|.+++++.++.| |.|-+||......+. .+ .+ .....
T Consensus 300 ~s~~~lr~N-l-------~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~-----~~--~n~s~ 364 (561)
T COG5354 300 VSVFDLRGN-L-------RFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAF-----NG--LNTSY 364 (561)
T ss_pred eeecccccc-e-------EEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEe-----ec--CCceE
Confidence 999998765 2 234455666789999999999999877 569999987654333 22 22 23345
Q ss_pred EEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECC
Q 006825 509 ANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMD 587 (630)
Q Consensus 509 vafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~D 587 (630)
+.|+||+.++.+....-.. ..|..+ .||++.|..+. ..+.+.|-|. ++..+.|.+
T Consensus 365 ~~wspd~qF~~~~~ts~k~--------------~~Dn~i---~l~~v~g~~~f-------el~~~~W~p~~~~~ttsSs~ 420 (561)
T COG5354 365 CDWSPDGQFYDTDTTSEKL--------------RVDNSI---KLWDVYGAKVF-------ELTNITWDPSGQYVTTSSSC 420 (561)
T ss_pred eeccCCceEEEecCCCccc--------------ccCcce---EEEEecCchhh-------hhhhccccCCcccceeeccC
Confidence 7899999999887543322 233444 78888776654 3456667776 554444444
Q ss_pred C
Q 006825 588 K 588 (630)
Q Consensus 588 g 588 (630)
.
T Consensus 421 ~ 421 (561)
T COG5354 421 P 421 (561)
T ss_pred C
Confidence 3
No 275
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.87 E-value=0.00088 Score=72.96 Aligned_cols=129 Identities=15% Similarity=0.155 Sum_probs=98.3
Q ss_pred EcC-CCCeEEeecCCC-------CCc-cccCCcceEEEeecCCC--eEEEecCCc-EEEEEeCCCCcccceeeeeEeccc
Q 006825 388 SSV-TGHKERRSSDER-------DTS-SEKGGRRSSSATDDSQD--VSFHGQERV-RVRQYGKSCKDLTALYKCQEIQAH 455 (630)
Q Consensus 388 fSp-dG~~lasgS~D~-------dt~-s~~gh~~~Vsa~~~s~d--~l~Sgs~Dg-~VriWd~~~~el~~~~~v~tL~gH 455 (630)
|++ +|.+++..|..+ +.. ...++...|.-..+..+ .++.|..|+ .+-+||..+++ +..+.+.
T Consensus 327 fa~~~Gd~ia~VSRGkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e------~kr~e~~ 400 (668)
T COG4946 327 FAVVNGDYIALVSRGKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE------VKRIEKD 400 (668)
T ss_pred hccCCCcEEEEEecCcEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce------EEEeeCC
Confidence 554 678888877776 111 13444555555555544 488999999 99999998885 4567778
Q ss_pred CcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCee
Q 006825 456 NGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHL 527 (630)
Q Consensus 456 t~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I 527 (630)
-+.|.+|+.+++|++++.+-.-..|.+.|+.++..... .....+.|....|||+++++|.+.-++.+
T Consensus 401 lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~i-----dkS~~~lItdf~~~~nsr~iAYafP~gy~ 467 (668)
T COG4946 401 LGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLI-----DKSEYGLITDFDWHPNSRWIAYAFPEGYY 467 (668)
T ss_pred ccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEe-----cccccceeEEEEEcCCceeEEEecCccee
Confidence 89999999999999999988888899999999875433 34455789999999999999999887754
No 276
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=97.83 E-value=0.001 Score=73.78 Aligned_cols=140 Identities=14% Similarity=0.167 Sum_probs=100.1
Q ss_pred CccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCc
Q 006825 378 SWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNG 457 (630)
Q Consensus 378 gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~ 457 (630)
--.++|.+|.|+|+|+-++ ++-|-.--+|-+||+++. .+ +.--.+
T Consensus 268 ~k~GPVhdv~W~~s~~EF~---------------------------VvyGfMPAkvtifnlr~~------~v--~df~eg 312 (566)
T KOG2315|consen 268 LKEGPVHDVTWSPSGREFA---------------------------VVYGFMPAKVTIFNLRGK------PV--FDFPEG 312 (566)
T ss_pred CCCCCceEEEECCCCCEEE---------------------------EEEecccceEEEEcCCCC------Ee--EeCCCC
Confidence 3467888888888876443 356666778999998765 22 333467
Q ss_pred CEEEEEEccCCCEEEEEeCC---CcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccc
Q 006825 458 SIWSIKFSLDGRYLASAGED---CVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGR 534 (630)
Q Consensus 458 ~V~sVaFSpDG~~LASgS~D---gtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~ 534 (630)
+=+++-|+|.|++|+-+|.+ |.|-|||+.+.+++..+ . ....+.+.|+|||.+++++...-.++
T Consensus 313 pRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~-----~--a~~tt~~eW~PdGe~flTATTaPRlr------ 379 (566)
T KOG2315|consen 313 PRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKF-----K--AANTTVFEWSPDGEYFLTATTAPRLR------ 379 (566)
T ss_pred CccceEECCCCCEEEEeecCCCCCceEEEeccchhhcccc-----c--cCCceEEEEcCCCcEEEEEeccccEE------
Confidence 78899999999999999866 78999999987666553 1 13345679999999999997654442
Q ss_pred cccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcC
Q 006825 535 SINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSK 577 (630)
Q Consensus 535 ~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSP 577 (630)
.|+.+ +||+.+|.+++...=.. ..+.+.|-|
T Consensus 380 --------vdNg~---KiwhytG~~l~~~~f~s-EL~qv~W~P 410 (566)
T KOG2315|consen 380 --------VDNGI---KIWHYTGSLLHEKMFKS-ELLQVEWRP 410 (566)
T ss_pred --------ecCCe---EEEEecCceeehhhhhH-hHhheeeee
Confidence 34455 89999998876533221 566777765
No 277
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=97.82 E-value=0.017 Score=62.22 Aligned_cols=204 Identities=15% Similarity=0.066 Sum_probs=108.0
Q ss_pred cccEEEEECCCCcEEEEeeecCCCceeEEEEcCC-CceEeeecceeeecC--------ccceeEEEeec---ce-EeecC
Q 006825 290 EQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGT-GRQLTIEEFEMCVGH--------SPIVQELMRRQ---NV-EEGNK 356 (630)
Q Consensus 290 ~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~T-G~~lt~eef~~l~GH--------s~~V~~Lafs~---~l-aSgS~ 356 (630)
...|.|---.+|+.++|..++. |. ..+.++.. |+...........|+ .+-..++.|.| .+ ++--.
T Consensus 87 ~~p~~i~~~~~g~~l~vany~~-g~-v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG 164 (345)
T PF10282_consen 87 SSPCHIAVDPDGRFLYVANYGG-GS-VSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG 164 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETTT-TE-EEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT
T ss_pred CCcEEEEEecCCCEEEEEEccC-Ce-EEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC
Confidence 3456666667777777766532 33 34555554 555432222222222 23356788988 22 22222
Q ss_pred CCccEecccCCCCc--e--eEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcE
Q 006825 357 DSFDLNNNGSSGGG--M--KSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVR 432 (630)
Q Consensus 357 D~tvr~vWD~~tG~--~--~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~ 432 (630)
-..|. ++++.... . ...++......=+.++|+|+|+++. +....+.+
T Consensus 165 ~D~v~-~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Y----------------------------v~~e~s~~ 215 (345)
T PF10282_consen 165 ADRVY-VYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAY----------------------------VVNELSNT 215 (345)
T ss_dssp TTEEE-EEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEE----------------------------EEETTTTE
T ss_pred CCEEE-EEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEE----------------------------EecCCCCc
Confidence 23555 67765543 2 1223334445567899999988764 23334455
Q ss_pred EEEEeCC--CCcccceeeeeEec-cc--CcCEEEEEEccCCCEEEEEe-CCCcEEEEECc--CCceeeeeecccccCccc
Q 006825 433 VRQYGKS--CKDLTALYKCQEIQ-AH--NGSIWSIKFSLDGRYLASAG-EDCVIHVWQVV--ESERKGELLEKQEDGHLN 504 (630)
Q Consensus 433 VriWd~~--~~el~~~~~v~tL~-gH--t~~V~sVaFSpDG~~LASgS-~DgtIrVWDl~--tg~~~~~l~~~~~~gh~~ 504 (630)
|.+|+.. .+.+.....+.++. +. ......|+++|||++|+.+. ...+|-+|++. ++.. ..+. . ..-...
T Consensus 216 v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l-~~~~-~-~~~~G~ 292 (345)
T PF10282_consen 216 VSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTL-TLVQ-T-VPTGGK 292 (345)
T ss_dssp EEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTE-EEEE-E-EEESSS
T ss_pred EEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCce-EEEE-E-EeCCCC
Confidence 5555554 33222222222221 11 22688999999999877765 56789999993 2332 2211 0 111123
Q ss_pred ceEEEEECCCCCEEEEeeCC-Cee
Q 006825 505 MLLLANGSPEPTSLSPKHLD-NHL 527 (630)
Q Consensus 505 ~V~svafSpdg~~lasgs~D-g~I 527 (630)
....++++|+|++|+++..+ +.|
T Consensus 293 ~Pr~~~~s~~g~~l~Va~~~s~~v 316 (345)
T PF10282_consen 293 FPRHFAFSPDGRYLYVANQDSNTV 316 (345)
T ss_dssp SEEEEEE-TTSSEEEEEETTTTEE
T ss_pred CccEEEEeCCCCEEEEEecCCCeE
Confidence 46789999999999887644 566
No 278
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.81 E-value=0.007 Score=67.17 Aligned_cols=199 Identities=9% Similarity=-0.036 Sum_probs=110.1
Q ss_pred ceeEEEeec---c-eEeecCC---CccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcce
Q 006825 341 IVQELMRRQ---N-VEEGNKD---SFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRS 413 (630)
Q Consensus 341 ~V~~Lafs~---~-laSgS~D---~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~ 413 (630)
......|+| . ++-.+.+ ..+. ++|+.+|+...... ..+.+...+|||||++++-...
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iy-v~dl~tg~~~~lt~--~~g~~~~~~~SPDG~~la~~~~------------- 252 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLY-KYNLYTGKKEKIAS--SQGMLVVSDVSKDGSKLLLTMA------------- 252 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEE-EEECCCCcEEEEec--CCCcEEeeEECCCCCEEEEEEc-------------
Confidence 444566666 2 3333333 4455 77888887655432 3445667889999987763211
Q ss_pred EEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeC-CC--cEEEEECcCCce
Q 006825 414 SSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE-DC--VIHVWQVVESER 490 (630)
Q Consensus 414 Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~-Dg--tIrVWDl~tg~~ 490 (630)
...+..|+++++.+++. +.|..+........|+|||+.|+-.+. .+ .|.+.|+.+++.
T Consensus 253 -------------~~g~~~Iy~~dl~~g~~------~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~ 313 (419)
T PRK04043 253 -------------PKGQPDIYLYDTNTKTL------TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV 313 (419)
T ss_pred -------------cCCCcEEEEEECCCCcE------EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence 11245688888877643 334444443445689999987766553 33 577778877765
Q ss_pred eeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCE
Q 006825 491 KGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDV 570 (630)
Q Consensus 491 ~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V 570 (630)
.+.. ..+.. ...|+|||+.|+.......-. ... ... ...+.++.+...+.|.... ..
T Consensus 314 ~rlt----~~g~~----~~~~SPDG~~Ia~~~~~~~~~------------~~~-~~~-~I~v~d~~~g~~~~LT~~~-~~ 370 (419)
T PRK04043 314 EQVV----FHGKN----NSSVSTYKNYIVYSSRETNNE------------FGK-NTF-NLYLISTNSDYIRRLTANG-VN 370 (419)
T ss_pred EeCc----cCCCc----CceECCCCCEEEEEEcCCCcc------------cCC-CCc-EEEEEECCCCCeEECCCCC-Cc
Confidence 4332 12221 248999999988775432100 000 000 0034455444445554332 23
Q ss_pred EEEEEcCC-CeEEEEEC-CCc--EEEEeCCC
Q 006825 571 LDLSWSKS-QHLLSSSM-DKT--VRLWHLSS 597 (630)
Q Consensus 571 ~sLafSPd-~~LaSgS~-Dgt--VrIWDl~t 597 (630)
....|+|| ++|+-... .+. +.+.++..
T Consensus 371 ~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 371 QFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 36889999 66654443 233 44555543
No 279
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.81 E-value=0.014 Score=61.73 Aligned_cols=209 Identities=11% Similarity=0.040 Sum_probs=127.6
Q ss_pred cceeEEEeecceEeecCCCccEecccCCCCceeEEecC---CccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEE
Q 006825 340 PIVQELMRRQNVEEGNKDSFDLNNNGSSGGGMKSKKKG---SWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSA 416 (630)
Q Consensus 340 ~~V~~Lafs~~laSgS~D~tvr~vWD~~tG~~~~~lk~---gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa 416 (630)
+.+-.++++| ++--.+||..+|+.++.+.. .|... -.+||+||++|.+.-.|.
T Consensus 17 ~~avafaRRP--------G~~~~v~D~~~g~~~~~~~a~~gRHFyG--Hg~fs~dG~~LytTEnd~-------------- 72 (305)
T PF07433_consen 17 PEAVAFARRP--------GTFALVFDCRTGQLLQRLWAPPGRHFYG--HGVFSPDGRLLYTTENDY-------------- 72 (305)
T ss_pred CeEEEEEeCC--------CcEEEEEEcCCCceeeEEcCCCCCEEec--CEEEcCCCCEEEEecccc--------------
Confidence 3445566677 11112889999998876652 12211 268999999998754442
Q ss_pred eecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEe------------------CCC
Q 006825 417 TDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG------------------EDC 478 (630)
Q Consensus 417 ~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS------------------~Dg 478 (630)
....|.|-+||... .+..+.++..|---=-.|.+.|||+.|+.+- .+-
T Consensus 73 ----------~~g~G~IgVyd~~~----~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~p 138 (305)
T PF07433_consen 73 ----------ETGRGVIGVYDAAR----GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQP 138 (305)
T ss_pred ----------CCCcEEEEEEECcC----CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCC
Confidence 23578899999872 2335667766654455688999997777652 122
Q ss_pred cEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CC
Q 006825 479 VIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SD 557 (630)
Q Consensus 479 tIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sg 557 (630)
.+-+-|..+|+.+.+.. ....-|...+.-+++.++|..+...-..+.- ...+..+.-. .+
T Consensus 139 sL~~ld~~sG~ll~q~~-Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~------------------~~~~PLva~~~~g 199 (305)
T PF07433_consen 139 SLVYLDARSGALLEQVE-LPPDLHQLSIRHLAVDGDGTVAFAMQYQGDP------------------GDAPPLVALHRRG 199 (305)
T ss_pred ceEEEecCCCceeeeee-cCccccccceeeEEecCCCcEEEEEecCCCC------------------CccCCeEEEEcCC
Confidence 34444556666555432 1114467788899999888776655333311 0000011111 22
Q ss_pred CceEEe-------ccCCCCEEEEEEcCC-CeE-EEEECCCcEEEEeCCCCcEEEEEe
Q 006825 558 KPICSF-------QGHLDDVLDLSWSKS-QHL-LSSSMDKTVRLWHLSSKTCLKIFS 605 (630)
Q Consensus 558 k~l~tL-------~GHs~~V~sLafSPd-~~L-aSgS~DgtVrIWDl~tg~~l~t~~ 605 (630)
+.+..+ ..-.+.|-+|+++++ .++ +|+=.-+.+.+||..+++++....
T Consensus 200 ~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~ 256 (305)
T PF07433_consen 200 GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP 256 (305)
T ss_pred CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc
Confidence 222222 223467899999999 555 566678899999999999988765
No 280
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=0.0003 Score=76.16 Aligned_cols=263 Identities=13% Similarity=0.083 Sum_probs=166.3
Q ss_pred CccceeEEEeec--ceEeecCCCccEecccCC--CCceeEEecCCccCCEEEEEEcCCCCeEEeecC-CCCCc-------
Q 006825 338 HSPIVQELMRRQ--NVEEGNKDSFDLNNNGSS--GGGMKSKKKGSWFKSIRTVASSVTGHKERRSSD-ERDTS------- 405 (630)
Q Consensus 338 Hs~~V~~Lafs~--~laSgS~D~tvr~vWD~~--tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~-D~dt~------- 405 (630)
|...|+.+.-.- ++.++|.|+.++ .|.-. .|....+-...|+..|.+++.+-+|-+..|.++ |+...
T Consensus 8 hrd~i~hv~~tka~fiiqASlDGh~K-FWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPTKAKFIIQASLDGHKK-FWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeeehhheEEeeecchhhh-hcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 666677766554 788999999999 99753 244333322389999999999999999999887 66211
Q ss_pred ---------cccCCcceEEEeecCCCe-EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEe
Q 006825 406 ---------SEKGGRRSSSATDDSQDV-SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG 475 (630)
Q Consensus 406 ---------s~~gh~~~Vsa~~~s~d~-l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS 475 (630)
.+++-...+.+-.+.... .++--.++.+.++|....-.. ....-+-|..+|.++.+++-+..++|..
T Consensus 87 DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q---~~~fkklH~sPV~~i~y~qa~Ds~vSiD 163 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQ---DGYFKKLHFSPVKKIRYNQAGDSAVSID 163 (558)
T ss_pred chhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCc---cceecccccCceEEEEeeccccceeecc
Confidence 133333333322222112 344557889999987654211 2233356999999999999999999998
Q ss_pred CCCcEEEEECcC-Cc-----eeeeee----cccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccc---cc
Q 006825 476 EDCVIHVWQVVE-SE-----RKGELL----EKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKS---LS 542 (630)
Q Consensus 476 ~DgtIrVWDl~t-g~-----~~~~l~----~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s---~s 542 (630)
..|.|.-|.... -+ ....+. ...+.-......++.|+|++..+.+-..|..|++.....+..... ..
T Consensus 164 ~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~ 243 (558)
T KOG0882|consen 164 ISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVL 243 (558)
T ss_pred ccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccc
Confidence 899999999863 11 111100 011122335567899999999999999999997666544322111 11
Q ss_pred cCccccccEEEeCC----C---CceEEeccCCCCE-EEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825 543 LDHMVVPETVFALS----D---KPICSFQGHLDDV-LDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS 605 (630)
Q Consensus 543 ~d~~i~~~~Vwdls----g---k~l~tL~GHs~~V-~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~ 605 (630)
.+....+...+.+. + ..-+.++.|...+ +.+.|... ++|+-|..=| |++.++.++++++++.
T Consensus 244 t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 244 TDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILG 314 (558)
T ss_pred hhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEec
Confidence 11111111111111 1 1112344454433 56778777 8999888766 8999999999999997
No 281
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.81 E-value=7.8e-05 Score=84.03 Aligned_cols=147 Identities=13% Similarity=0.225 Sum_probs=107.2
Q ss_pred EEEecCCcEEEEEeCCCCc----------ccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeee
Q 006825 424 SFHGQERVRVRQYGKSCKD----------LTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGE 493 (630)
Q Consensus 424 l~Sgs~Dg~VriWd~~~~e----------l~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~ 493 (630)
++.|+.||.+++..+.+.. ...+.+.|+|.||.+.|.-+.|+.+.+.|-|...+|.|.||=+-.|.-..+
T Consensus 29 IAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EE 108 (1189)
T KOG2041|consen 29 IACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEE 108 (1189)
T ss_pred EEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHH
Confidence 5667778888777654321 123445689999999999999999999999999999999999988765544
Q ss_pred eecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEE
Q 006825 494 LLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDL 573 (630)
Q Consensus 494 l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sL 573 (630)
++ .......|.+++|..||..|...-.||.|-+-. .++ .+||.- .|+|. ....+
T Consensus 109 Mi---NnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGs-----------vdG----NRIwgK------eLkg~--~l~hv 162 (1189)
T KOG2041|consen 109 MI---NNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGS-----------VDG----NRIWGK------ELKGQ--LLAHV 162 (1189)
T ss_pred Hh---hCcCccEEEEEEEcCCCcEEEEEEccCCEEEEe-----------ecc----ceecch------hcchh--eccce
Confidence 43 245567788999999999999999999872211 111 155542 12221 12368
Q ss_pred EEcCC-CeEEEEECCCcEEEEeCC
Q 006825 574 SWSKS-QHLLSSSMDKTVRLWHLS 596 (630)
Q Consensus 574 afSPd-~~LaSgS~DgtVrIWDl~ 596 (630)
.|++| ..++.+-..|.+.|+|..
T Consensus 163 ~ws~D~~~~Lf~~ange~hlydnq 186 (1189)
T KOG2041|consen 163 LWSEDLEQALFKKANGETHLYDNQ 186 (1189)
T ss_pred eecccHHHHHhhhcCCcEEEeccc
Confidence 89999 777788888999999975
No 282
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.80 E-value=0.0066 Score=62.84 Aligned_cols=209 Identities=14% Similarity=0.073 Sum_probs=111.2
Q ss_pred ccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCc------cCCEEEEEEcCCCCeEEeecCCCCCccccC
Q 006825 339 SPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSW------FKSIRTVASSVTGHKERRSSDERDTSSEKG 409 (630)
Q Consensus 339 s~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH------~~~V~sVAfSpdG~~lasgS~D~dt~s~~g 409 (630)
.+.-+.|+|+| .||-+..-++|+ +.|+. |..+..+...+ ...|-.++|-.--
T Consensus 43 ~PQWRkl~WSpD~tlLa~a~S~G~i~-vfdl~-g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~----------------- 103 (282)
T PF15492_consen 43 NPQWRKLAWSPDCTLLAYAESTGTIR-VFDLM-GSELFVIPPAMSFPGDLSDAIAGLIFLEYK----------------- 103 (282)
T ss_pred CchheEEEECCCCcEEEEEcCCCeEE-EEecc-cceeEEcCcccccCCccccceeeeEeeccc-----------------
Confidence 35567789999 688888889999 99985 45555555322 1222223332210
Q ss_pred CcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEec---ccCcCEEEEEEccCCCEEEEEeCCCcEEEEECc
Q 006825 410 GRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQ---AHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVV 486 (630)
Q Consensus 410 h~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~---gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~ 486 (630)
.. ...+ .-++.-..+|.++-|-+..+........+++. .+...|.++.|+|.-++|+.||.-.. .
T Consensus 104 -~s----~~ws-~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~ 171 (282)
T PF15492_consen 104 -KS----AQWS-YELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------Q 171 (282)
T ss_pred -cc----cccc-eeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------C
Confidence 00 0011 12455556777777765433222233333332 35778999999999998888774332 0
Q ss_pred CCceeeeeecccccCcccceE---EEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEe
Q 006825 487 ESERKGELLEKQEDGHLNMLL---LANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSF 563 (630)
Q Consensus 487 tg~~~~~l~~~~~~gh~~~V~---svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL 563 (630)
++.. .+....+. -+.-.|-.+.+ +...+.....-.+ ..+|.+....+...
T Consensus 172 ~~~s---------~a~~~GLtaWRiL~~~Pyyk~v-~~~~~~~~~~~~~-----------------~~~~~~~~~~~fs~ 224 (282)
T PF15492_consen 172 DGMS---------KASSCGLTAWRILSDSPYYKQV-TSSEDDITASSKR-----------------RGLLRIPSFKFFSR 224 (282)
T ss_pred Cccc---------cccccCceEEEEcCCCCcEEEc-cccCccccccccc-----------------cceeeccceeeeec
Confidence 0000 00011111 11112222111 1212221100000 02232211111112
Q ss_pred cc-CCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825 564 QG-HLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS 605 (630)
Q Consensus 564 ~G-Hs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~ 605 (630)
++ -.+.|..|..||| +.||+.+.+|.|.||++.+-++.+.++
T Consensus 225 ~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 225 QGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred cccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence 22 4567999999999 999999999999999999988887775
No 283
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.78 E-value=0.015 Score=57.93 Aligned_cols=191 Identities=11% Similarity=-0.008 Sum_probs=105.9
Q ss_pred ecceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEe
Q 006825 348 RQNVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHG 427 (630)
Q Consensus 348 s~~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sg 427 (630)
...+..++.++.+. .||..+|+.+.++.. ...+.... ......++.+
T Consensus 36 ~~~v~~~~~~~~l~-~~d~~tG~~~W~~~~--~~~~~~~~------------------------------~~~~~~v~v~ 82 (238)
T PF13360_consen 36 GGRVYVASGDGNLY-ALDAKTGKVLWRFDL--PGPISGAP------------------------------VVDGGRVYVG 82 (238)
T ss_dssp TTEEEEEETTSEEE-EEETTTSEEEEEEEC--SSCGGSGE------------------------------EEETTEEEEE
T ss_pred CCEEEEEcCCCEEE-EEECCCCCEEEEeec--ccccccee------------------------------eecccccccc
Confidence 34566778899999 999999998877662 11110000 1112234455
Q ss_pred cCCcEEEEEeCCCCcccceeeeeE-eccc---CcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCc-
Q 006825 428 QERVRVRQYGKSCKDLTALYKCQE-IQAH---NGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGH- 502 (630)
Q Consensus 428 s~Dg~VriWd~~~~el~~~~~v~t-L~gH---t~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh- 502 (630)
..++.|+.+|..+++. +.. .... ......+....++..++.+..++.|..+|+.+|+.+.........+-
T Consensus 83 ~~~~~l~~~d~~tG~~-----~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~ 157 (238)
T PF13360_consen 83 TSDGSLYALDAKTGKV-----LWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSS 157 (238)
T ss_dssp ETTSEEEEEETTTSCE-----EEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS-
T ss_pred cceeeeEecccCCcce-----eeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCc
Confidence 5677899999877764 222 1111 01122233333488888888899999999999998776532110000
Q ss_pred ----ccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcC
Q 006825 503 ----LNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSK 577 (630)
Q Consensus 503 ----~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSP 577 (630)
...+..-....++ .+..+..++.+. .+ ++ +++.+-... ...+..+ ...
T Consensus 158 ~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~----------------------~~-d~~tg~~~w~~~--~~~~~~~-~~~ 210 (238)
T PF13360_consen 158 PISSFSDINGSPVISDG-RVYVSSGDGRVV----------------------AV-DLATGEKLWSKP--ISGIYSL-PSV 210 (238)
T ss_dssp -EEEETTEEEEEECCTT-EEEEECCTSSEE----------------------EE-ETTTTEEEEEEC--SS-ECEC-EEC
T ss_pred ceeeecccccceEEECC-EEEEEcCCCeEE----------------------EE-ECCCCCEEEEec--CCCccCC-cee
Confidence 0111222222244 444444455320 33 44 444332222 2223332 234
Q ss_pred C-CeEEEEECCCcEEEEeCCCCcEEEE
Q 006825 578 S-QHLLSSSMDKTVRLWHLSSKTCLKI 603 (630)
Q Consensus 578 d-~~LaSgS~DgtVrIWDl~tg~~l~t 603 (630)
. +.|+.++.|+.|.+||+.+|+.+.+
T Consensus 211 ~~~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 211 DGGTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp CCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred eCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence 4 7888778999999999999998754
No 284
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.77 E-value=0.009 Score=66.30 Aligned_cols=199 Identities=9% Similarity=-0.070 Sum_probs=110.3
Q ss_pred cccCC-CCceeEEecCCccCCEEEEEEcCCCCe-EEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCC
Q 006825 363 NNGSS-GGGMKSKKKGSWFKSIRTVASSVTGHK-ERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSC 440 (630)
Q Consensus 363 vWD~~-tG~~~~~lk~gH~~~V~sVAfSpdG~~-lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~ 440 (630)
||-+. .|...+.+..+ +.+..-.|||||++ ++-.+.+ .....|+++|..+
T Consensus 171 l~~~d~dg~~~~~~~~~--~~~~~p~wSpDG~~~i~y~s~~--------------------------~~~~~Iyv~dl~t 222 (419)
T PRK04043 171 IVLADYTLTYQKVIVKG--GLNIFPKWANKEQTAFYYTSYG--------------------------ERKPTLYKYNLYT 222 (419)
T ss_pred EEEECCCCCceeEEccC--CCeEeEEECCCCCcEEEEEEcc--------------------------CCCCEEEEEECCC
Confidence 66432 24434434423 26778999999985 4322211 0134689999887
Q ss_pred CcccceeeeeEecccCcCEEEEEEccCCCEEE-EEeCC--CcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCE
Q 006825 441 KDLTALYKCQEIQAHNGSIWSIKFSLDGRYLA-SAGED--CVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTS 517 (630)
Q Consensus 441 ~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LA-SgS~D--gtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~ 517 (630)
++. ..+....+.+....|+|||+.|+ +.+.+ ..|.++|+.++.. ..+ ..+........|+|||+.
T Consensus 223 g~~------~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~~L-----T~~~~~d~~p~~SPDG~~ 290 (419)
T PRK04043 223 GKK------EKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-TQI-----TNYPGIDVNGNFVEDDKR 290 (419)
T ss_pred CcE------EEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-EEc-----ccCCCccCccEECCCCCE
Confidence 753 22333555667788999998665 44434 4577778877653 332 222222334579999988
Q ss_pred EEEeeCC-CeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECC--------
Q 006825 518 LSPKHLD-NHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMD-------- 587 (630)
Q Consensus 518 lasgs~D-g~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~D-------- 587 (630)
|+..+.. +.-.+ .+.++.+.....+.-.... ...|+|+ ++|+-.+..
T Consensus 291 I~F~Sdr~g~~~I---------------------y~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~ 347 (419)
T PRK04043 291 IVFVSDRLGYPNI---------------------FMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKN 347 (419)
T ss_pred EEEEECCCCCceE---------------------EEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEcCCCcccCCC
Confidence 8776543 21100 3444433333222211111 2489999 777655543
Q ss_pred -CcEEEEeCCCCcEEEEEecCCceEEEE-cCCCcEEEEec
Q 006825 588 -KTVRLWHLSSKTCLKIFSHSDYDISLV-DRLMLRFAYGA 625 (630)
Q Consensus 588 -gtVrIWDl~tg~~l~t~~H~~~V~sVa-s~~~~~lAsgs 625 (630)
..|.+.|+.++.. +.+.......... +|++..+++..
T Consensus 348 ~~~I~v~d~~~g~~-~~LT~~~~~~~p~~SPDG~~I~f~~ 386 (419)
T PRK04043 348 TFNLYLISTNSDYI-RRLTANGVNQFPRFSSDGGSIMFIK 386 (419)
T ss_pred CcEEEEEECCCCCe-EECCCCCCcCCeEECCCCCEEEEEE
Confidence 3677888888764 3343222222233 77777776653
No 285
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.75 E-value=0.027 Score=61.01 Aligned_cols=233 Identities=10% Similarity=0.020 Sum_probs=133.1
Q ss_pred CccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEe
Q 006825 358 SFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYG 437 (630)
Q Consensus 358 ~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd 437 (630)
+++- +-|..+++.+.++..|..... + +||||+.+..+.. +. ..+..|-.+..|.+||
T Consensus 27 ~~v~-ViD~~~~~v~g~i~~G~~P~~--~-~spDg~~lyva~~------------------~~-~R~~~G~~~d~V~v~D 83 (352)
T TIGR02658 27 TQVY-TIDGEAGRVLGMTDGGFLPNP--V-VASDGSFFAHAST------------------VY-SRIARGKRTDYVEVID 83 (352)
T ss_pred ceEE-EEECCCCEEEEEEEccCCCce--e-ECCCCCEEEEEec------------------cc-cccccCCCCCEEEEEE
Confidence 5666 889999999998887766665 4 9999997753211 00 1124455678899999
Q ss_pred CCCCcccceeeeeEecc----c---CcCEEEEEEccCCCEEEEEe-C-CCcEEEEECcCCceeeeeecccccCcccceE-
Q 006825 438 KSCKDLTALYKCQEIQA----H---NGSIWSIKFSLDGRYLASAG-E-DCVIHVWQVVESERKGELLEKQEDGHLNMLL- 507 (630)
Q Consensus 438 ~~~~el~~~~~v~tL~g----H---t~~V~sVaFSpDG~~LASgS-~-DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~- 507 (630)
..+.+. +.++.- + -..-..++++|||++|+... . +..|-|.|+.+++.+.++.. +-...++
T Consensus 84 ~~t~~~-----~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v----p~~~~vy~ 154 (352)
T TIGR02658 84 PQTHLP-----IADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV----PDCYHIFP 154 (352)
T ss_pred CccCcE-----EeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC----CCCcEEEE
Confidence 988764 333331 1 22345789999999998776 3 68999999999998887642 1111111
Q ss_pred -----EEEECCCCCEEEEee-CCCeeeeecccc--c----c-ccccccc-Cccccc----c--EEEeCCC------CceE
Q 006825 508 -----LANGSPEPTSLSPKH-LDNHLEKKRRGR--S----I-NRKSLSL-DHMVVP----E--TVFALSD------KPIC 561 (630)
Q Consensus 508 -----svafSpdg~~lasgs-~Dg~I~i~~~~~--~----~-~~~s~s~-d~~i~~----~--~Vwdlsg------k~l~ 561 (630)
....+.||.++.... .+++.......- . . ....+.. ++...+ . .+.++.+ +.+.
T Consensus 155 t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~ 234 (352)
T TIGR02658 155 TANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIE 234 (352)
T ss_pred ecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceee
Confidence 223345555444222 222221111000 0 0 0000011 111100 0 2233211 1111
Q ss_pred Eec------c-CCCCEEEEEEcCC-CeEEEEE----------CCCcEEEEeCCCCcEEEEEecCCceEEEE-cCCCc-EE
Q 006825 562 SFQ------G-HLDDVLDLSWSKS-QHLLSSS----------MDKTVRLWHLSSKTCLKIFSHSDYDISLV-DRLML-RF 621 (630)
Q Consensus 562 tL~------G-Hs~~V~sLafSPd-~~LaSgS----------~DgtVrIWDl~tg~~l~t~~H~~~V~sVa-s~~~~-~l 621 (630)
.+. + ..+.+.-++++|+ ++|.... ..+.|-++|+.+++.+..+.-...++.|+ ++++. .+
T Consensus 235 ~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~l 314 (352)
T TIGR02658 235 AFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLL 314 (352)
T ss_pred eccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEE
Confidence 111 0 2223344999998 6655532 12589999999999999998667888999 77777 44
Q ss_pred E
Q 006825 622 A 622 (630)
Q Consensus 622 A 622 (630)
.
T Consensus 315 y 315 (352)
T TIGR02658 315 Y 315 (352)
T ss_pred E
Confidence 3
No 286
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.75 E-value=0.00018 Score=74.64 Aligned_cols=217 Identities=18% Similarity=0.211 Sum_probs=131.1
Q ss_pred ccCCEEEEEEcCCCCeEEeecCCC-----CCcc-----------ccCCc---------------ceEEEeecCCCe-EEE
Q 006825 379 WFKSIRTVASSVTGHKERRSSDER-----DTSS-----------EKGGR---------------RSSSATDDSQDV-SFH 426 (630)
Q Consensus 379 H~~~V~sVAfSpdG~~lasgS~D~-----dt~s-----------~~gh~---------------~~Vsa~~~s~d~-l~S 426 (630)
-...|.+|-|...|.|+++|...+ +... +.+|. ..|......+-. ++-
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 345688899999999999987554 0000 22221 122223333322 666
Q ss_pred ecCCcEEEEEeCCCCccc-------------------------------c------eeeeeEe-cccCcCEEEEEEccCC
Q 006825 427 GQERVRVRQYGKSCKDLT-------------------------------A------LYKCQEI-QAHNGSIWSIKFSLDG 468 (630)
Q Consensus 427 gs~Dg~VriWd~~~~el~-------------------------------~------~~~v~tL-~gHt~~V~sVaFSpDG 468 (630)
...|.+|++|.+-.+.+. . .+..+.. .+|...|.+|.|+.|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 678999999987544110 0 0111222 5788999999999999
Q ss_pred CEEEEEeCCCcEEEEECcCCceeeeee-ccc--ccCcccceEEEEECCC-CCEEEEeeCCCeeeeecccccccccccccC
Q 006825 469 RYLASAGEDCVIHVWQVVESERKGELL-EKQ--EDGHLNMLLLANGSPE-PTSLSPKHLDNHLEKKRRGRSINRKSLSLD 544 (630)
Q Consensus 469 ~~LASgS~DgtIrVWDl~tg~~~~~l~-~~~--~~gh~~~V~svafSpd-g~~lasgs~Dg~I~i~~~~~~~~~~s~s~d 544 (630)
..++|+ .|-.|.+|++.-......+. ..+ ...-...|++..|+|. ...+...+..|.|++.+..+... .+
T Consensus 185 et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~al-----cd 258 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSAL-----CD 258 (460)
T ss_pred heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhh-----cc
Confidence 988875 57889999986543322222 111 1112345778899998 56677778889887665443110 00
Q ss_pred ccccccEEEeC--CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCC-CcEEEEEe
Q 006825 545 HMVVPETVFAL--SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSS-KTCLKIFS 605 (630)
Q Consensus 545 ~~i~~~~Vwdl--sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~t-g~~l~t~~ 605 (630)
.. .+++.. .+--+--|.+-...|..+.|+++ .|+++-. =-+|+|||+.. ..|++++.
T Consensus 259 n~---~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pikTi~ 319 (460)
T COG5170 259 NS---KKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIKTIP 319 (460)
T ss_pred Cc---hhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccCCceeec
Confidence 00 022222 12222224455667899999999 5666544 46999999985 56888885
No 287
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.69 E-value=0.0014 Score=67.06 Aligned_cols=169 Identities=15% Similarity=0.019 Sum_probs=107.5
Q ss_pred EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccC-CCEEEEEeCCCcEEEEECcCCceeeeeecccccCc
Q 006825 424 SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLD-GRYLASAGEDCVIHVWQVVESERKGELLEKQEDGH 502 (630)
Q Consensus 424 l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpD-G~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh 502 (630)
++.|+..|...+|...+++. ..+.-..|...|.-+.=.-| .--+.-++.|.++|+.++.-+.....+. ...
T Consensus 87 la~gG~~g~fd~~~~~tn~~----h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h----~~~ 158 (344)
T KOG4532|consen 87 LADGGASGQFDLFACNTNDG----HLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVH----NQN 158 (344)
T ss_pred EEeccccceeeeecccCccc----ceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceee----ccc
Confidence 78888999999999887753 12222334332221111112 1236668999999999997655443331 111
Q ss_pred ccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC--CC-CceEEe-ccCCCCEEEEEEcCC
Q 006825 503 LNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL--SD-KPICSF-QGHLDDVLDLSWSKS 578 (630)
Q Consensus 503 ~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl--sg-k~l~tL-~GHs~~V~sLafSPd 578 (630)
-.+..+.+++|++++++.++...| ..+.+ .+ ..+.+. ..-++.=.+..|+..
T Consensus 159 -~~~ns~~~snd~~~~~~Vgds~~V-----------------------f~y~id~~sey~~~~~~a~t~D~gF~~S~s~~ 214 (344)
T KOG4532|consen 159 -LTQNSLHYSNDPSWGSSVGDSRRV-----------------------FRYAIDDESEYIENIYEAPTSDHGFYNSFSEN 214 (344)
T ss_pred -cceeeeEEcCCCceEEEecCCCcc-----------------------eEEEeCCccceeeeeEecccCCCceeeeeccC
Confidence 227789999999999998777766 34444 22 233322 223344467889887
Q ss_pred -CeEEEEECCCcEEEEeCCCC-cEEEEEe-----cCCceEEEE----cCCCcEEEEe
Q 006825 579 -QHLLSSSMDKTVRLWHLSSK-TCLKIFS-----HSDYDISLV----DRLMLRFAYG 624 (630)
Q Consensus 579 -~~LaSgS~DgtVrIWDl~tg-~~l~t~~-----H~~~V~sVa----s~~~~~lAsg 624 (630)
..+|++..||++.|||++.. .+..+.. |.+.|..+. .+..+.+.+-
T Consensus 215 ~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sE 271 (344)
T KOG4532|consen 215 DLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISE 271 (344)
T ss_pred cceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEec
Confidence 89999999999999999874 3333332 889998887 3444445443
No 288
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.69 E-value=0.003 Score=64.80 Aligned_cols=193 Identities=10% Similarity=0.010 Sum_probs=125.1
Q ss_pred ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecC
Q 006825 350 NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQE 429 (630)
Q Consensus 350 ~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~ 429 (630)
+||.|+.-+... +|..+|.+....+-.-|...|. .+.-..+....+.-++.
T Consensus 86 ~la~gG~~g~fd-~~~~~tn~~h~~~cd~snn~v~----------------------------~~~r~cd~~~~~~i~sn 136 (344)
T KOG4532|consen 86 TLADGGASGQFD-LFACNTNDGHLYQCDVSNNDVT----------------------------LVKRYCDLKFPLNIASN 136 (344)
T ss_pred EEEeccccceee-eecccCcccceeeecccccchh----------------------------hhhhhcccccceeeccC
Confidence 688888888888 8988765433222212222221 11122233333566677
Q ss_pred CcEEEEEeCCCCcccceeeeeEecccCcC--EEEEEEccCCCEEEEEeCCCcEEEEECcCCce-eeeeecccccCcccce
Q 006825 430 RVRVRQYGKSCKDLTALYKCQEIQAHNGS--IWSIKFSLDGRYLASAGEDCVIHVWQVVESER-KGELLEKQEDGHLNML 506 (630)
Q Consensus 430 Dg~VriWd~~~~el~~~~~v~tL~gHt~~--V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~-~~~l~~~~~~gh~~~V 506 (630)
|.+++++++..+-.. +.-|... +..+++++|++++++.+.-..|-.|.+..... +..+. .......-
T Consensus 137 dht~k~~~~~~~s~~-------~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~---~a~t~D~g 206 (344)
T KOG4532|consen 137 DHTGKTMVVSGDSNK-------FAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIY---EAPTSDHG 206 (344)
T ss_pred CcceeEEEEecCccc-------ceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeE---ecccCCCc
Confidence 777888877655322 1224333 88999999999999999999999999865332 21111 23334555
Q ss_pred EEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC--CCCceEE----eccCCCCEEEEEEcCC--
Q 006825 507 LLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL--SDKPICS----FQGHLDDVLDLSWSKS-- 578 (630)
Q Consensus 507 ~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl--sgk~l~t----L~GHs~~V~sLafSPd-- 578 (630)
++..|+.....+|++..|+++ .|||+ .+.+..+ -..|.+.|..+.|++-
T Consensus 207 F~~S~s~~~~~FAv~~Qdg~~-----------------------~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~ 263 (344)
T KOG4532|consen 207 FYNSFSENDLQFAVVFQDGTC-----------------------AIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGL 263 (344)
T ss_pred eeeeeccCcceEEEEecCCcE-----------------------EEEEecccccchhhhcccCCCCCCceEEEEecCCCc
Confidence 788899999999999999999 66665 2222222 2358999999999964
Q ss_pred -CeEEEEECCCcEEEEeCCCCcEEEEE
Q 006825 579 -QHLLSSSMDKTVRLWHLSSKTCLKIF 604 (630)
Q Consensus 579 -~~LaSgS~DgtVrIWDl~tg~~l~t~ 604 (630)
.+|.-.=.=+.+.+-|+++++-.+.+
T Consensus 264 lDLLf~sEhfs~~hv~D~R~~~~~q~I 290 (344)
T KOG4532|consen 264 LDLLFISEHFSRVHVVDTRNYVNHQVI 290 (344)
T ss_pred ceEEEEecCcceEEEEEcccCceeeEE
Confidence 55555555678999999998654443
No 289
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.69 E-value=0.0048 Score=67.99 Aligned_cols=215 Identities=10% Similarity=0.033 Sum_probs=122.1
Q ss_pred ccEecccCCCCceeEEecCCccCC--EE-EEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEE
Q 006825 359 FDLNNNGSSGGGMKSKKKGSWFKS--IR-TVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQ 435 (630)
Q Consensus 359 tvr~vWD~~tG~~~~~lk~gH~~~--V~-sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~Vri 435 (630)
.+. +||.++|..+..+. +-... .. -+.|+-+.+|.|.-. ...+.+
T Consensus 109 ~~~-vwd~~sg~iv~sf~-~~~q~~~~Wp~~k~s~~D~y~ARvv------------------------------~~sl~i 156 (561)
T COG5354 109 NVF-VWDIASGMIVFSFN-GISQPYLGWPVLKFSIDDKYVARVV------------------------------GSSLYI 156 (561)
T ss_pred cee-EEeccCceeEeecc-ccCCcccccceeeeeecchhhhhhc------------------------------cCeEEE
Confidence 577 99999999999887 44433 22 367777766655321 113677
Q ss_pred EeCCCCcccceeeeeEecccCcCEEEEEEccCC--CEEEE-----EeCCCcEEEEECcCCceeeeeecccccCcccceEE
Q 006825 436 YGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDG--RYLAS-----AGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLL 508 (630)
Q Consensus 436 Wd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG--~~LAS-----gS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~s 508 (630)
+++ ++.+... ..+.|+ ...|....|+|.| ..||. .+.+++++||.+..+..+.+.. + ....-..
T Consensus 157 ~e~-t~n~~~~-p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~---l--fk~~~~q 227 (561)
T COG5354 157 HEI-TDNIEEH-PFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKN---L--FKVSGVQ 227 (561)
T ss_pred Eec-CCccccC-chhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeee---e--EeecccE
Confidence 775 3332211 112222 3567888889853 34444 5788999999997555443311 0 0011125
Q ss_pred EEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEE--EEE
Q 006825 509 ANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLL--SSS 585 (630)
Q Consensus 509 vafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~La--SgS 585 (630)
+.|.+.|.+++.-..-.+ + .++ +.=... .-.++.+++.-+....+-.++|...+|.|. ..++ +|-
T Consensus 228 LkW~~~g~~ll~l~~t~~-k---snK-----syfges---nLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~ 295 (561)
T COG5354 228 LKWQVLGKYLLVLVMTHT-K---SNK-----SYFGES---NLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGY 295 (561)
T ss_pred EEEecCCceEEEEEEEee-e---ccc-----ceeccc---eEEEEeecccccceeccccccceeeeecccCCceeEEecc
Confidence 677888887765421111 0 000 000000 116677777777766677899999999998 5544 556
Q ss_pred CCCcEEEEeCCCCcEEEEEecCCceEEEEcCCCcEEEEecce
Q 006825 586 MDKTVRLWHLSSKTCLKIFSHSDYDISLVDRLMLRFAYGAFL 627 (630)
Q Consensus 586 ~DgtVrIWDl~tg~~l~t~~H~~~V~sVas~~~~~lAsgs~~ 627 (630)
++-++-++|++.. ....+.....-+-+-+|...++..+++.
T Consensus 296 ~pa~~s~~~lr~N-l~~~~Pe~~rNT~~fsp~~r~il~agF~ 336 (561)
T COG5354 296 MPASVSVFDLRGN-LRFYFPEQKRNTIFFSPHERYILFAGFD 336 (561)
T ss_pred cccceeecccccc-eEEecCCcccccccccCcccEEEEecCC
Confidence 8999999999866 3333332222222225555555554443
No 290
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.60 E-value=0.0007 Score=77.74 Aligned_cols=151 Identities=13% Similarity=0.157 Sum_probs=108.4
Q ss_pred eEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceee
Q 006825 413 SSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKG 492 (630)
Q Consensus 413 ~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~ 492 (630)
.++|.+++...++-|+.+|.|++++....- .+..-|... ..+|.+++|||.||+|.|-.+-+.+...
T Consensus 41 ~is~~av~~~~~~~GtH~g~v~~~~~~~~~-------~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 41 AISCCAVHDKFFALGTHRGAVYLTTCQGNP-------KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred HHHHHHhhcceeeeccccceEEEEecCCcc-------ccccccccc------ccCCceEEEecCCCcEEEeeccCCccce
Confidence 455666676778889999999999875431 223345444 6689999999999999999998877665
Q ss_pred eeecccccCcccceEEEEECCC-----CCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCC
Q 006825 493 ELLEKQEDGHLNMLLLANGSPE-----PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHL 567 (630)
Q Consensus 493 ~l~~~~~~gh~~~V~svafSpd-----g~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs 567 (630)
++ .-..++.+|+++|+ .+.+++|+..| +.+..+ -|--....+ .+..-.
T Consensus 108 ~~------df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er-------------------~wlgnk~~v-~l~~~e 160 (846)
T KOG2066|consen 108 QY------DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSER-------------------NWLGNKDSV-VLSEGE 160 (846)
T ss_pred eE------ecCCcceeEEeccchhhhhhhheeecCcce-EEEehh-------------------hhhcCccce-eeecCc
Confidence 53 33467889999998 56788887777 422222 121111122 455566
Q ss_pred CCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825 568 DDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS 605 (630)
Q Consensus 568 ~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~l~t~~ 605 (630)
+.|.++.|.. .++|=++.+| |+++|+.+++.+..++
T Consensus 161 G~I~~i~W~g-~lIAWand~G-v~vyd~~~~~~l~~i~ 196 (846)
T KOG2066|consen 161 GPIHSIKWRG-NLIAWANDDG-VKVYDTPTRQRLTNIP 196 (846)
T ss_pred cceEEEEecC-cEEEEecCCC-cEEEeccccceeeccC
Confidence 8899999976 5777777666 8999999999888776
No 291
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.56 E-value=0.034 Score=60.16 Aligned_cols=133 Identities=11% Similarity=-0.017 Sum_probs=83.8
Q ss_pred CeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccC
Q 006825 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG 501 (630)
Q Consensus 422 d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~g 501 (630)
..++.+..++.++.||..+++. +.... . ....... .++..|+.++.||.|..+|..+++.+..... ..+
T Consensus 242 ~~vy~~~~~g~l~a~d~~tG~~-----~W~~~-~-~~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~--~~~ 310 (377)
T TIGR03300 242 GQVYAVSYQGRVAALDLRSGRV-----LWKRD-A-SSYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDE--LKY 310 (377)
T ss_pred CEEEEEEcCCEEEEEECCCCcE-----EEeec-c-CCccCce--EeCCEEEEECCCCeEEEEECCCCcEEEcccc--ccC
Confidence 3477788899999999987753 12221 1 1111222 2566788888999999999999986654310 011
Q ss_pred cccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEE-EEEcCCC
Q 006825 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLD-LSWSKSQ 579 (630)
Q Consensus 502 h~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~s-LafSPd~ 579 (630)
. ....... .+..++.+..++.+ .+++. +|+.+.++..+...+.. .++. ++
T Consensus 311 ~--~~ssp~i--~g~~l~~~~~~G~l-----------------------~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~~ 362 (377)
T TIGR03300 311 R--QLTAPAV--VGGYLVVGDFEGYL-----------------------HWLSREDGSFVARLKTDGSGIASPPVVV-GD 362 (377)
T ss_pred C--ccccCEE--ECCEEEEEeCCCEE-----------------------EEEECCCCCEEEEEEcCCCccccCCEEE-CC
Confidence 1 1111111 25577778888888 66776 68888888766644322 2232 36
Q ss_pred eEEEEECCCcEEEE
Q 006825 580 HLLSSSMDKTVRLW 593 (630)
Q Consensus 580 ~LaSgS~DgtVrIW 593 (630)
.|+.++.||.|..|
T Consensus 363 ~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 363 GLLVQTRDGDLYAF 376 (377)
T ss_pred EEEEEeCCceEEEe
Confidence 78899999999865
No 292
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.55 E-value=0.038 Score=67.19 Aligned_cols=275 Identities=13% Similarity=0.069 Sum_probs=141.0
Q ss_pred ccccEEEEECCCCcEEEEeeecCCCceeEEEEcC-CCceEeeeccee--eecCccceeEEEeec---ceEeecCCCccEe
Q 006825 289 AEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVG-TGRQLTIEEFEM--CVGHSPIVQELMRRQ---NVEEGNKDSFDLN 362 (630)
Q Consensus 289 ~~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~-TG~~lt~eef~~--l~GHs~~V~~Lafs~---~laSgS~D~tvr~ 362 (630)
......+++.+....+++...........+.... .+..-.+..+.. .....+.|..+.+.+ .++-+..+|-|.
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~- 100 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDII- 100 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEE-
Confidence 3445566777777776664432211112222222 221111111110 012335667777766 455555566666
Q ss_pred cc--cCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEE-----EeecCCCeEEEecCCcEEEE
Q 006825 363 NN--GSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSS-----ATDDSQDVSFHGQERVRVRQ 435 (630)
Q Consensus 363 vW--D~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vs-----a~~~s~d~l~Sgs~Dg~Vri 435 (630)
+. |...+......-+.-...|.+++||||+..++-...++........--.+. .-.+...-.++.+
T Consensus 101 ~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVG------- 173 (928)
T PF04762_consen 101 LVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVG------- 173 (928)
T ss_pred EEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeec-------
Confidence 44 222222222223234468999999999998776554431000000000011 1111111112222
Q ss_pred EeCCCCcccce------------e----eeeEecccCcCEEEEEEccCCCEEEEEeC---C---CcEEEEECcCCceeee
Q 006825 436 YGKSCKDLTAL------------Y----KCQEIQAHNGSIWSIKFSLDGRYLASAGE---D---CVIHVWQVVESERKGE 493 (630)
Q Consensus 436 Wd~~~~el~~~------------~----~v~tL~gHt~~V~sVaFSpDG~~LASgS~---D---gtIrVWDl~tg~~~~~ 493 (630)
|.++.-++.+- . -...+. +...-..|+|-.||.|+|..+. . +.||||+-+ |.....
T Consensus 174 WGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~st 251 (928)
T PF04762_consen 174 WGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQST 251 (928)
T ss_pred cCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEec
Confidence 33321111000 0 011233 5556678999999999999874 2 579999975 443322
Q ss_pred eecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEec----cCCCC
Q 006825 494 LLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ----GHLDD 569 (630)
Q Consensus 494 l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~----GHs~~ 569 (630)
.....+--..++|-|.|.+||+.-.-..- ..+ .+|.-.|-....|. .....
T Consensus 252 -----SE~v~gLe~~l~WrPsG~lIA~~q~~~~~-----------------~~V---vFfErNGLrhgeF~l~~~~~~~~ 306 (928)
T PF04762_consen 252 -----SEPVDGLEGALSWRPSGNLIASSQRLPDR-----------------HDV---VFFERNGLRHGEFTLRFDPEEEK 306 (928)
T ss_pred -----cccCCCccCCccCCCCCCEEEEEEEcCCC-----------------cEE---EEEecCCcEeeeEecCCCCCCce
Confidence 12222334478999999999987431100 001 44555665555443 34567
Q ss_pred EEEEEEcCC-CeEEEEECCCcEEEEeCCCCc
Q 006825 570 VLDLSWSKS-QHLLSSSMDKTVRLWHLSSKT 599 (630)
Q Consensus 570 V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~ 599 (630)
|..|+|+++ ..||.--.|. |.||-+.+..
T Consensus 307 v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH 336 (928)
T PF04762_consen 307 VIELAWNSDSEILAVWLEDR-VQLWTRSNYH 336 (928)
T ss_pred eeEEEECCCCCEEEEEecCC-ceEEEeeCCE
Confidence 999999999 7777766555 9999887654
No 293
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.49 E-value=0.00034 Score=71.24 Aligned_cols=60 Identities=18% Similarity=0.354 Sum_probs=52.7
Q ss_pred EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc-CCCEEEEEeCCCcEEEEECcC
Q 006825 424 SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVE 487 (630)
Q Consensus 424 l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp-DG~~LASgS~DgtIrVWDl~t 487 (630)
++.|++||.+-+||+..... .+..|++|+.+|+-|-|+| ++..|+++++||.+.-||..+
T Consensus 195 v~cgt~dg~~~l~d~rn~~~----p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 195 VCCGTDDGIVGLWDARNVAM----PVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred EEEecCCCeEEEEEcccccc----hHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 68889999999999976632 4566899999999999999 788999999999999999874
No 294
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.48 E-value=0.21 Score=53.31 Aligned_cols=270 Identities=14% Similarity=0.091 Sum_probs=139.2
Q ss_pred ccccccEEEEECCCCcEEEEeeecCCCc-eeEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCC-CccE
Q 006825 287 GVAEQGCLIKNLDNGKEFVVNEIQEDGT-WKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKD-SFDL 361 (630)
Q Consensus 287 ~~~~~~~~I~~LddG~~~~v~e~~~dg~-~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D-~tvr 361 (630)
+..+.+...++.+....|.+++.+.+|. ...-+|...|+.--+.+ ..+.|+.+ .-+++.+ +|+++..- +.|.
T Consensus 38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~-~~~~g~~p--~yvsvd~~g~~vf~AnY~~g~v~ 114 (346)
T COG2706 38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNR-QTLPGSPP--CYVSVDEDGRFVFVANYHSGSVS 114 (346)
T ss_pred ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeec-cccCCCCC--eEEEECCCCCEEEEEEccCceEE
Confidence 3455566666665556666666655544 33344545565442222 34445544 4455544 45444443 2333
Q ss_pred ecccCCC-CceeEEe-cCCccCC----------EEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecC
Q 006825 362 NNNGSSG-GGMKSKK-KGSWFKS----------IRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQE 429 (630)
Q Consensus 362 ~vWD~~t-G~~~~~l-k~gH~~~----------V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~ 429 (630)
+.-+.. |...... ...|... +-.+-|.|+|+++.+ .--.
T Consensus 115 -v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v----------------------------~DLG 165 (346)
T COG2706 115 -VYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVV----------------------------PDLG 165 (346)
T ss_pred -EEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEE----------------------------eecC
Confidence 443322 2211100 0012222 333444555544432 2223
Q ss_pred CcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEe-CCCcEEEEECcCC-ceeeee---eccc-ccCcc
Q 006825 430 RVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG-EDCVIHVWQVVES-ERKGEL---LEKQ-EDGHL 503 (630)
Q Consensus 430 Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS-~DgtIrVWDl~tg-~~~~~l---~~~~-~~gh~ 503 (630)
.-+|.+|++..+.+..... ..+ .-...-.-|.|+|++++..... .+++|-+|..... ....++ ...+ .-.-.
T Consensus 166 ~Dri~~y~~~dg~L~~~~~-~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~ 243 (346)
T COG2706 166 TDRIFLYDLDDGKLTPADP-AEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGT 243 (346)
T ss_pred CceEEEEEcccCccccccc-ccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCC
Confidence 3468888887665543322 122 2233457899999999876655 6899999998763 222221 1000 01123
Q ss_pred cceEEEEECCCCCEEEEeeCCC-eeeeecccccccccccccCccccccEEEeC--CCCceEEe---ccCCCCEEEEEEcC
Q 006825 504 NMLLLANGSPEPTSLSPKHLDN-HLEKKRRGRSINRKSLSLDHMVVPETVFAL--SDKPICSF---QGHLDDVLDLSWSK 577 (630)
Q Consensus 504 ~~V~svafSpdg~~lasgs~Dg-~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl--sgk~l~tL---~GHs~~V~sLafSP 577 (630)
.....|.+++||++|.++-..- .| .+|.+ .+..+..+ ..+...-....|++
T Consensus 244 ~~~aaIhis~dGrFLYasNRg~dsI-----------------------~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~ 300 (346)
T COG2706 244 NWAAAIHISPDGRFLYASNRGHDSI-----------------------AVFSVDPDGGKLELVGITPTEGQFPRDFNINP 300 (346)
T ss_pred CceeEEEECCCCCEEEEecCCCCeE-----------------------EEEEEcCCCCEEEEEEEeccCCcCCccceeCC
Confidence 4566888999999998763322 22 34444 22222221 22333457788999
Q ss_pred C-CeEEEEECC-CcEEEEeCC--CCcEEEEEe--cCCceEEE
Q 006825 578 S-QHLLSSSMD-KTVRLWHLS--SKTCLKIFS--HSDYDISL 613 (630)
Q Consensus 578 d-~~LaSgS~D-gtVrIWDl~--tg~~l~t~~--H~~~V~sV 613 (630)
. .+|+.+..| .+|.++... +|++..... +.....||
T Consensus 301 ~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv 342 (346)
T COG2706 301 SGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCV 342 (346)
T ss_pred CCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEE
Confidence 8 888777764 568888654 565544333 44444444
No 295
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.45 E-value=0.00075 Score=68.83 Aligned_cols=144 Identities=15% Similarity=0.193 Sum_probs=90.4
Q ss_pred CeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeC-----CCcEEEEECcCCceeeeeec
Q 006825 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE-----DCVIHVWQVVESERKGELLE 496 (630)
Q Consensus 422 d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~-----DgtIrVWDl~tg~~~~~l~~ 496 (630)
..++.+..|+.+-+++... .+. ..+.+..-...-.+.++-..+++|.+++. -+..++|++.. +..++.
T Consensus 102 t~V~~~~~dg~~~v~s~~~-~~~---~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p---~~t~~~ 174 (319)
T KOG4714|consen 102 NRVCIGYADGSLAVFSTDK-DLA---LMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDP---IKTLIP 174 (319)
T ss_pred CceEecCCCceEEEEechH-HHh---hhhhcccccccccccceeecccEEecCCcceEeeccceeeecccc---cccccc
Confidence 4478888999999988753 221 11112211222233444445666655431 12344555532 223221
Q ss_pred ccccCcccceEEEEECCC-CCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC--CCCceEEeccCCCCEEEE
Q 006825 497 KQEDGHLNMLLLANGSPE-PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL--SDKPICSFQGHLDDVLDL 573 (630)
Q Consensus 497 ~~~~gh~~~V~svafSpd-g~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl--sgk~l~tL~GHs~~V~sL 573 (630)
. ......|.+++-+|. ..++++|+.||.+ .+|+. -..++..|+.|..+|+.+
T Consensus 175 ~--~~~~~~v~~l~~hp~qq~~v~cgt~dg~~-----------------------~l~d~rn~~~p~S~l~ahk~~i~eV 229 (319)
T KOG4714|consen 175 S--KKALDAVTALCSHPAQQHLVCCGTDDGIV-----------------------GLWDARNVAMPVSLLKAHKAEIWEV 229 (319)
T ss_pred c--ccccccchhhhCCcccccEEEEecCCCeE-----------------------EEEEcccccchHHHHHHhhhhhhhe
Confidence 1 111234888899997 4556667788888 66665 235666788999999999
Q ss_pred EEcCC--CeEEEEECCCcEEEEeCCC
Q 006825 574 SWSKS--QHLLSSSMDKTVRLWHLSS 597 (630)
Q Consensus 574 afSPd--~~LaSgS~DgtVrIWDl~t 597 (630)
-|+|. ..|++++.||.+-.||..+
T Consensus 230 ~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 230 HFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred eccCCCchheeEecCCCcEEEEcCCC
Confidence 99997 8999999999999999875
No 296
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.43 E-value=0.015 Score=63.65 Aligned_cols=140 Identities=10% Similarity=0.086 Sum_probs=104.0
Q ss_pred CCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCC-cEEEEECcCCceeeeeecccccCcccceE
Q 006825 429 ERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDC-VIHVWQVVESERKGELLEKQEDGHLNMLL 507 (630)
Q Consensus 429 ~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~Dg-tIrVWDl~tg~~~~~l~~~~~~gh~~~V~ 507 (630)
..|++.+++...+- .+ --+|.+.|.-..+.-+++-++.|-.|| .|-|+|..+++..+. ....+.|.
T Consensus 339 SRGkaFi~~~~~~~-----~i--qv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~------e~~lg~I~ 405 (668)
T COG4946 339 SRGKAFIMRPWDGY-----SI--QVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRI------EKDLGNIE 405 (668)
T ss_pred ecCcEEEECCCCCe-----eE--EcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEe------eCCccceE
Confidence 45666666543321 12 236888899999999999999999999 899999998875544 55668899
Q ss_pred EEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEE
Q 006825 508 LANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSS 585 (630)
Q Consensus 508 svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS 585 (630)
++..+++|+.++.+-....+ .+.++ +|.....-+...+-|+..+|||+ .++|-+-
T Consensus 406 av~vs~dGK~~vvaNdr~el-----------------------~vididngnv~~idkS~~~lItdf~~~~nsr~iAYaf 462 (668)
T COG4946 406 AVKVSPDGKKVVVANDRFEL-----------------------WVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAF 462 (668)
T ss_pred EEEEcCCCcEEEEEcCceEE-----------------------EEEEecCCCeeEecccccceeEEEEEcCCceeEEEec
Confidence 99999999999888555554 44555 45444333455677999999999 8888776
Q ss_pred CCC----cEEEEeCCCCcEEEEE
Q 006825 586 MDK----TVRLWHLSSKTCLKIF 604 (630)
Q Consensus 586 ~Dg----tVrIWDl~tg~~l~t~ 604 (630)
-+| .|+|+|+..++....-
T Consensus 463 P~gy~tq~Iklydm~~~Kiy~vT 485 (668)
T COG4946 463 PEGYYTQSIKLYDMDGGKIYDVT 485 (668)
T ss_pred CcceeeeeEEEEecCCCeEEEec
Confidence 655 7899999988765543
No 297
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.41 E-value=0.00038 Score=46.66 Aligned_cols=37 Identities=41% Similarity=0.789 Sum_probs=33.8
Q ss_pred eeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 006825 448 KCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQ 484 (630)
Q Consensus 448 ~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWD 484 (630)
+...+.+|...|+++.|++.+.++++++.|+.|++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4567788999999999999999999999999999996
No 298
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.0028 Score=68.09 Aligned_cols=228 Identities=11% Similarity=0.065 Sum_probs=133.6
Q ss_pred ceeeecCccceeEEEeec----ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccc
Q 006825 332 FEMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSE 407 (630)
Q Consensus 332 f~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~ 407 (630)
.+-+.+|...|+.|+|+| .+..+|.+.+++ |-|+.+-....... .| +.|.+++|..|..
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkik-i~dlet~~~vssy~-a~-~~~wSC~wDlde~-------------- 248 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIK-IMDLETSCVVSSYI-AY-NQIWSCCWDLDER-------------- 248 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEE-EEecccceeeehee-cc-CCceeeeeccCCc--------------
Confidence 367889999999999999 578999999999 99999988888887 55 8899999987632
Q ss_pred cCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecc--cCcCEEEEE------EccCCCEEEEEeCCCc
Q 006825 408 KGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQA--HNGSIWSIK------FSLDGRYLASAGEDCV 479 (630)
Q Consensus 408 ~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~g--Ht~~V~sVa------FSpDG~~LASgS~Dgt 479 (630)
..++.|-..|.|.+||+...+-. ++++.+ -..+|..|+ ..+-|.+|+-.+.+
T Consensus 249 --------------h~IYaGl~nG~VlvyD~R~~~~~----~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~-- 308 (463)
T KOG1645|consen 249 --------------HVIYAGLQNGMVLVYDMRQPEGP----LMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV-- 308 (463)
T ss_pred --------------ceeEEeccCceEEEEEccCCCch----HhhhhhhhccCcceeecccCccccccccceEEeeehh--
Confidence 34789999999999999866532 222322 122343333 33445555555543
Q ss_pred EEEEECcCCce--eeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCC
Q 006825 480 IHVWQVVESER--KGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD 557 (630)
Q Consensus 480 IrVWDl~tg~~--~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsg 557 (630)
+..|++.-... ...+ ..+..+.+.+.++++-...++...... ....... .+.. ++-..+|
T Consensus 309 l~f~ei~~s~~~~p~vl----ele~pG~cismqy~~~snh~l~tyRs~------pn~p~~r-------~il~-~~d~~dG 370 (463)
T KOG1645|consen 309 LQFYEIVFSAECLPCVL----ELEPPGICISMQYHGVSNHLLLTYRSN------PNFPQSR-------FILG-RIDFRDG 370 (463)
T ss_pred hhhhhhhccccCCCccc----ccCCCcceeeeeecCccceEEEEecCC------CCCccce-------eeee-eeccccC
Confidence 55676532211 1111 123334555666666444443332211 0000000 0000 1112233
Q ss_pred CceEEe-ccCCC----CE--EEEEE-cCC-CeEE-EEECCCcEEEEeCCCCcEEEEEecCCceEEEE
Q 006825 558 KPICSF-QGHLD----DV--LDLSW-SKS-QHLL-SSSMDKTVRLWHLSSKTCLKIFSHSDYDISLV 614 (630)
Q Consensus 558 k~l~tL-~GHs~----~V--~sLaf-SPd-~~La-SgS~DgtVrIWDl~tg~~l~t~~H~~~V~sVa 614 (630)
.+++.- .+|.+ .+ +...+ .++ ++++ .+..-+++.|||+.+.+.++++.-..+|..+.
T Consensus 371 ~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ~l~~~epv~Dic 437 (463)
T KOG1645|consen 371 FPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVVQTLALSEPVLDIC 437 (463)
T ss_pred ceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhheeeecccCcceeecc
Confidence 332221 11210 00 11122 234 4444 66667899999999999999999778888887
No 299
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.37 E-value=0.036 Score=59.01 Aligned_cols=212 Identities=12% Similarity=0.055 Sum_probs=121.5
Q ss_pred CCccEecccCC--CCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEE
Q 006825 357 DSFDLNNNGSS--GGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVR 434 (630)
Q Consensus 357 D~tvr~vWD~~--tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~Vr 434 (630)
.+.|. +|++. +|+.....+..+.....=++|+|++++|-++..+. .++.|-
T Consensus 15 s~gI~-v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~--------------------------~~ggva 67 (346)
T COG2706 15 SQGIY-VFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPG--------------------------EEGGVA 67 (346)
T ss_pred CCceE-EEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecC--------------------------CcCcEE
Confidence 35566 88765 35544433447788888899999998887654332 122222
Q ss_pred EEeC--CCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCC-CcEEEEECcCCceeeeeecccccCcccc------
Q 006825 435 QYGK--SCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED-CVIHVWQVVESERKGELLEKQEDGHLNM------ 505 (630)
Q Consensus 435 iWd~--~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~D-gtIrVWDl~tg~~~~~l~~~~~~gh~~~------ 505 (630)
.|.+ ..+.+..+- .+.+.|+. -.-|+++++|++|+++..- +.|.++-+.+...+..... ...|.+.
T Consensus 68 ay~iD~~~G~Lt~ln-~~~~~g~~--p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~--~~~h~g~~p~~rQ 142 (346)
T COG2706 68 AYRIDPDDGRLTFLN-RQTLPGSP--PCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQ--VVKHTGSGPHERQ 142 (346)
T ss_pred EEEEcCCCCeEEEee-ccccCCCC--CeEEEECCCCCEEEEEEccCceEEEEEcccCCcccccee--eeecCCCCCCccc
Confidence 2222 223222111 12233332 2789999999999998754 7899999966333222210 1222222
Q ss_pred ----eEEEEECCCCCEEEEeeCC-CeeeeecccccccccccccCccccccEEEeCC-CCceE----EeccCCCCEEEEEE
Q 006825 506 ----LLLANGSPEPTSLSPKHLD-NHLEKKRRGRSINRKSLSLDHMVVPETVFALS-DKPIC----SFQGHLDDVLDLSW 575 (630)
Q Consensus 506 ----V~svafSpdg~~lasgs~D-g~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdls-gk~l~----tL~GHs~~V~sLaf 575 (630)
+....+.|+++++++.... ..| .+|++. |++.. .+ .....-..|+|
T Consensus 143 ~~~h~H~a~~tP~~~~l~v~DLG~Dri-----------------------~~y~~~dg~L~~~~~~~v-~~G~GPRHi~F 198 (346)
T COG2706 143 ESPHVHSANFTPDGRYLVVPDLGTDRI-----------------------FLYDLDDGKLTPADPAEV-KPGAGPRHIVF 198 (346)
T ss_pred cCCccceeeeCCCCCEEEEeecCCceE-----------------------EEEEcccCcccccccccc-CCCCCcceEEE
Confidence 7889999999998886322 123 455552 22211 11 22334578999
Q ss_pred cCC-CeEEEEE-CCCcEEEEeCCCC----cEEEEEe-------cCCceEEEE-cCCCcEEEEe
Q 006825 576 SKS-QHLLSSS-MDKTVRLWHLSSK----TCLKIFS-------HSDYDISLV-DRLMLRFAYG 624 (630)
Q Consensus 576 SPd-~~LaSgS-~DgtVrIWDl~tg----~~l~t~~-------H~~~V~sVa-s~~~~~lAsg 624 (630)
+|+ ++..... .+++|-+|..... ++++++. ...+.-.|. ++++..|...
T Consensus 199 Hpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYas 261 (346)
T COG2706 199 HPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYAS 261 (346)
T ss_pred cCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEe
Confidence 999 6655444 5999999998763 2333332 233334444 6666666543
No 300
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.35 E-value=0.00043 Score=46.41 Aligned_cols=38 Identities=29% Similarity=0.536 Sum_probs=34.0
Q ss_pred CCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEe
Q 006825 557 DKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWH 594 (630)
Q Consensus 557 gk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWD 594 (630)
++++..+.+|...|.++.|.+. .++++++.|+.|++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 3566778889999999999998 9999999999999996
No 301
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.32 E-value=0.00018 Score=82.81 Aligned_cols=198 Identities=16% Similarity=0.123 Sum_probs=130.7
Q ss_pred eeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccC
Q 006825 333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKG 409 (630)
Q Consensus 333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~g 409 (630)
..+..|....++++|+. .|+.|+--+.++ ++++.+|....... +|...|+-|-=+.||..+.+++
T Consensus 1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik-~~nv~sG~~e~s~n-cH~SavT~vePs~dgs~~Ltss---------- 1162 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIK-IFNVSSGSMEESVN-CHQSAVTLVEPSVDGSTQLTSS---------- 1162 (1516)
T ss_pred hhhhccccceeeEEeecCCceEEeeeccceEE-EEEccCcccccccc-ccccccccccccCCcceeeeec----------
Confidence 45666778889999987 899999999999 99999999999888 9999999888888887655432
Q ss_pred CcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCc
Q 006825 410 GRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE 489 (630)
Q Consensus 410 h~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~ 489 (630)
.+++ -...+|++..- +...++|.+. .++.|+..-+.-+.|..-..+.|||+.++.
T Consensus 1163 --------s~S~---------PlsaLW~~~s~----~~~~Hsf~ed----~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~ 1217 (1516)
T KOG1832|consen 1163 --------SSSS---------PLSALWDASST----GGPRHSFDED----KAVKFSNSLQFRALGTEADDALLYDVQTCS 1217 (1516)
T ss_pred --------cccC---------chHHHhccccc----cCcccccccc----ceeehhhhHHHHHhcccccceEEEecccCc
Confidence 1111 12567877531 2234555443 478898755444444444678999999998
Q ss_pred eeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCC
Q 006825 490 RKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLD 568 (630)
Q Consensus 490 ~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~ 568 (630)
...+++... .+....-..+.|+|+.++|+. || .+|++ ..+.++.|.--+.
T Consensus 1218 ~l~tylt~~-~~~~y~~n~a~FsP~D~LIln---dG-------------------------vLWDvR~~~aIh~FD~ft~ 1268 (1516)
T KOG1832|consen 1218 PLQTYLTDT-VTSSYSNNLAHFSPCDTLILN---DG-------------------------VLWDVRIPEAIHRFDQFTD 1268 (1516)
T ss_pred HHHHhcCcc-hhhhhhccccccCCCcceEee---Cc-------------------------eeeeeccHHHHhhhhhhee
Confidence 877754221 222223367889999888764 34 56776 3355555543332
Q ss_pred CEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEE
Q 006825 569 DVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLK 602 (630)
Q Consensus 569 ~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~ 602 (630)
. ..-.|+|. ..++--+ .|||++|-+.++
T Consensus 1269 ~-~~G~FHP~g~eVIINS-----EIwD~RTF~lLh 1297 (1516)
T KOG1832|consen 1269 Y-GGGGFHPSGNEVIINS-----EIWDMRTFKLLH 1297 (1516)
T ss_pred c-ccccccCCCceEEeec-----hhhhhHHHHHHh
Confidence 2 23357887 5555444 478888754443
No 302
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.31 E-value=0.022 Score=63.48 Aligned_cols=144 Identities=13% Similarity=0.023 Sum_probs=87.8
Q ss_pred EEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCC
Q 006825 345 LMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQ 421 (630)
Q Consensus 345 Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~ 421 (630)
+.|+| +|+|=-.- .|. +|.-.+-..++++- |. .|+-+.|||..+||+|-+-.......
T Consensus 216 v~wSP~GTYL~t~Hk~-GI~-lWGG~~f~r~~RF~--Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~-------------- 276 (698)
T KOG2314|consen 216 VRWSPKGTYLVTFHKQ-GIA-LWGGESFDRIQRFY--HP-GVQFIDFSPNEKYLVTYSPEPIIVEE-------------- 276 (698)
T ss_pred EEecCCceEEEEEecc-cee-eecCccHHHHHhcc--CC-CceeeecCCccceEEEecCCccccCc--------------
Confidence 55677 56665443 344 89887777777765 43 57779999999999986544211000
Q ss_pred CeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEE-EEEccCCCEEEEEeCCCcEEEEECcCCceeeeeeccccc
Q 006825 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWS-IKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQED 500 (630)
Q Consensus 422 d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~s-VaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~ 500 (630)
.-.....++|||+.++.+...+.+ ++ -...+|. ..||.|++|+|--.. .+|.|++...-..+-. ..
T Consensus 277 ----~d~e~~~l~IWDI~tG~lkrsF~~--~~-~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~-----Ks 343 (698)
T KOG2314|consen 277 ----DDNEGQQLIIWDIATGLLKRSFPV--IK-SPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDK-----KS 343 (698)
T ss_pred ----ccCCCceEEEEEccccchhcceec--cC-CCccccceEEeccCCceeEEecc-ceEEEEecCceeeecc-----cc
Confidence 011234699999999976443322 22 2233444 589999999997666 5699998755322111 01
Q ss_pred CcccceEEEEECCCCCEEEE
Q 006825 501 GHLNMLLLANGSPEPTSLSP 520 (630)
Q Consensus 501 gh~~~V~svafSpdg~~las 520 (630)
-....|....|+|.+.+||.
T Consensus 344 lki~gIr~FswsP~~~llAY 363 (698)
T KOG2314|consen 344 LKISGIRDFSWSPTSNLLAY 363 (698)
T ss_pred cCCccccCcccCCCcceEEE
Confidence 12244556667776666654
No 303
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.30 E-value=0.0021 Score=74.80 Aligned_cols=148 Identities=17% Similarity=0.195 Sum_probs=102.3
Q ss_pred EEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEe---------CCCcEEEEE
Q 006825 414 SSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG---------EDCVIHVWQ 484 (630)
Q Consensus 414 Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS---------~DgtIrVWD 484 (630)
|.-+......++.|...|+|-+-|..+-+ .++++.+|++.|.++.. .|++|+|+| .|..|+|||
T Consensus 180 v~imR~Nnr~lf~G~t~G~V~LrD~~s~~-----~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYD 252 (1118)
T KOG1275|consen 180 VTIMRYNNRNLFCGDTRGTVFLRDPNSFE-----TIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYD 252 (1118)
T ss_pred eEEEEecCcEEEeecccceEEeecCCcCc-----eeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhh
Confidence 44444555568999999999999886554 58999999999987766 899999998 477899999
Q ss_pred CcCCceeeeeecccccCcccceEEEEECCC-CCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEE-
Q 006825 485 VVESERKGELLEKQEDGHLNMLLLANGSPE-PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICS- 562 (630)
Q Consensus 485 l~tg~~~~~l~~~~~~gh~~~V~svafSpd-g~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~t- 562 (630)
++.-..+..+ +....-..+.|+|. ...++.++..|...+-+... +..-+...
T Consensus 253 LRmmral~PI------~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~--------------------lsNP~~~~~ 306 (1118)
T KOG1275|consen 253 LRMMRALSPI------QFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTAT--------------------LSNPPAGVK 306 (1118)
T ss_pred hhhhhccCCc------ccccCchhhhhcccccceEEEEecccceeeccccc--------------------cCCCcccee
Confidence 9865544332 11122246778887 55666677777663222100 11111222
Q ss_pred -eccCCCCEEEEEEcCC-CeEEEEECCCcEEEEe
Q 006825 563 -FQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWH 594 (630)
Q Consensus 563 -L~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWD 594 (630)
+.--...+..+.++++ +.++-|-.+|.|.+|-
T Consensus 307 ~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 307 MVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred EEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 2223345899999999 9999999999999997
No 304
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.28 E-value=0.00064 Score=71.64 Aligned_cols=135 Identities=15% Similarity=0.188 Sum_probs=95.2
Q ss_pred eEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc-CCCEEEEEeCCCcEEEEECcCCc
Q 006825 413 SSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVESE 489 (630)
Q Consensus 413 ~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp-DG~~LASgS~DgtIrVWDl~tg~ 489 (630)
.|-+..|.... ++.|...|.|..+|+.++.....-+.+.|. |..+|++|..-. ++++|++.+.+|+|++||++--+
T Consensus 254 DVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K 332 (425)
T KOG2695|consen 254 DVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATK 332 (425)
T ss_pred hHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhh
Confidence 45555555533 788999999999999887433334555555 999999998877 88999999999999999998766
Q ss_pred e---eeeeecccccCcccceEEEEE--CCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEe
Q 006825 490 R---KGELLEKQEDGHLNMLLLANG--SPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSF 563 (630)
Q Consensus 490 ~---~~~l~~~~~~gh~~~V~svaf--Spdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL 563 (630)
+ +.+ +.||.+.-.-+-+ .++...+++++.|... +||.+ .|.+++++
T Consensus 333 ~~~~V~q-----YeGHvN~~a~l~~~v~~eeg~I~s~GdDcyt-----------------------RiWsl~~ghLl~ti 384 (425)
T KOG2695|consen 333 CKKSVMQ-----YEGHVNLSAYLPAHVKEEEGSIFSVGDDCYT-----------------------RIWSLDSGHLLCTI 384 (425)
T ss_pred cccceee-----eecccccccccccccccccceEEEccCeeEE-----------------------EEEecccCceeecc
Confidence 6 444 5788665443333 4556677778888877 77777 56676665
Q ss_pred ccC----CCCEEEEEEc
Q 006825 564 QGH----LDDVLDLSWS 576 (630)
Q Consensus 564 ~GH----s~~V~sLafS 576 (630)
.-. ...+.+++|.
T Consensus 385 pf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 385 PFPYSASEVDIPSVAFD 401 (425)
T ss_pred CCCCccccccccceehh
Confidence 432 2234555554
No 305
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.00047 Score=74.65 Aligned_cols=173 Identities=14% Similarity=0.143 Sum_probs=104.7
Q ss_pred CeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeC-CCcEEEEECcCCceeeeeeccccc
Q 006825 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE-DCVIHVWQVVESERKGELLEKQED 500 (630)
Q Consensus 422 d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~-DgtIrVWDl~tg~~~~~l~~~~~~ 500 (630)
+.+.+++.|+.++.|....- .....+..+..|.+.|..++.+-+|.++.|.+. |..+|++|+++-..+..+....+.
T Consensus 21 ~fiiqASlDGh~KFWkKs~i--sGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lP 98 (558)
T KOG0882|consen 21 KFIIQASLDGHKKFWKKSRI--SGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLP 98 (558)
T ss_pred heEEeeecchhhhhcCCCCc--cceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCC
Confidence 34788999999999987532 222345667889999999999999999999888 999999998765443221100001
Q ss_pred -------------------------------------------CcccceEEEEECCCCCEEEEeeCCCeeeeeccccccc
Q 006825 501 -------------------------------------------GHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSIN 537 (630)
Q Consensus 501 -------------------------------------------gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~ 537 (630)
-|..+|..+.+.+.+..+++....|.|.-|.......
T Consensus 99 g~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~q 178 (558)
T KOG0882|consen 99 GFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQ 178 (558)
T ss_pred CceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCccc
Confidence 1222333333333333333333333333332221000
Q ss_pred ccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEE
Q 006825 538 RKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIF 604 (630)
Q Consensus 538 ~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~ 604 (630)
.......|.+ ...-+..+........++.|+|+ ..+.+-+.|..||++++.+|+.++.+
T Consensus 179 --------fPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei 239 (558)
T KOG0882|consen 179 --------FPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI 239 (558)
T ss_pred --------CccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence 0000012222 12222333344556789999999 88998899999999999999877655
No 306
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.18 E-value=0.023 Score=64.86 Aligned_cols=278 Identities=13% Similarity=0.072 Sum_probs=161.0
Q ss_pred cEEEEECCCCcEEEEeeecCCCceeEEEEcC-C------C--ceEeeecceeeecCccceeEEEeec---ceEeecCCCc
Q 006825 292 GCLIKNLDNGKEFVVNEIQEDGTWKKVKEVG-T------G--RQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSF 359 (630)
Q Consensus 292 ~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~-T------G--~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~t 359 (630)
.|.-||-..|-. .-.|.||....|+=-+ | | ..-++---++|.||...|+-+-+.. .|-|...++.
T Consensus 18 ~c~~WNke~gyI---AcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl 94 (1189)
T KOG2041|consen 18 HCAEWNKESGYI---ACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL 94 (1189)
T ss_pred EEEEEcccCCeE---EeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence 577788877732 2245677644443211 1 1 1112222378999999999999976 5777777888
Q ss_pred cEecccCCCCceeEEec-CCccCCEEEEEEcCCCCeEEeecCCC---------CC--cc-ccCCcceEEEeecCCCe--E
Q 006825 360 DLNNNGSSGGGMKSKKK-GSWFKSIRTVASSVTGHKERRSSDER---------DT--SS-EKGGRRSSSATDDSQDV--S 424 (630)
Q Consensus 360 vr~vWD~~tG~~~~~lk-~gH~~~V~sVAfSpdG~~lasgS~D~---------dt--~s-~~gh~~~Vsa~~~s~d~--l 424 (630)
|. +|-+-.|.....+. ....+-|.++.|..||.++.-.=.|+ +. ++ ++|.. .+-+..++|. +
T Consensus 95 Ii-VWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~--l~hv~ws~D~~~~ 171 (1189)
T KOG2041|consen 95 II-VWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQL--LAHVLWSEDLEQA 171 (1189)
T ss_pred EE-EEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchhe--ccceeecccHHHH
Confidence 88 99998887544332 23456788999999999876544443 11 11 22211 1122233333 3
Q ss_pred EEecCCcEEEEEeCCCCccccee--eee----EecccCcCEEEEEEc--------cCCCEEEEEeCCCcEEEEECcCCce
Q 006825 425 FHGQERVRVRQYGKSCKDLTALY--KCQ----EIQAHNGSIWSIKFS--------LDGRYLASAGEDCVIHVWQVVESER 490 (630)
Q Consensus 425 ~Sgs~Dg~VriWd~~~~el~~~~--~v~----tL~gHt~~V~sVaFS--------pDG~~LASgS~DgtIrVWDl~tg~~ 490 (630)
..+-..|.+.+||.+..=...+. +.- .+......|-.+.|. ||-..||.+-..|.+.|..-.+...
T Consensus 172 Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~ 251 (1189)
T KOG2041|consen 172 LFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPE 251 (1189)
T ss_pred HhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCC
Confidence 33445577888886543111111 111 111112235566664 4777899999999888875544333
Q ss_pred eeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCE
Q 006825 491 KGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDV 570 (630)
Q Consensus 491 ~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V 570 (630)
...+ ..+ -.+..+.|+++|..++.++.+..-.- . ...+.+ .++..-|+.+.+|+-....|
T Consensus 252 Pvv~----dtg--m~~vgakWnh~G~vLAvcG~~~da~~---~--------~d~n~v---~Fysp~G~i~gtlkvpg~~I 311 (1189)
T KOG2041|consen 252 PVVV----DTG--MKIVGAKWNHNGAVLAVCGNDSDADE---P--------TDSNKV---HFYSPYGHIVGTLKVPGSCI 311 (1189)
T ss_pred CeEE----ecc--cEeecceecCCCcEEEEccCcccccC---c--------cccceE---EEeccchhheEEEecCCcee
Confidence 2221 122 45678899999999999877653210 0 000111 55666788888898888889
Q ss_pred EEEEEcCCCeEEEEECCCcEEEEeC
Q 006825 571 LDLSWSKSQHLLSSSMDKTVRLWHL 595 (630)
Q Consensus 571 ~sLafSPd~~LaSgS~DgtVrIWDl 595 (630)
+.++|-..++=+.-..|++|.+=++
T Consensus 312 t~lsWEg~gLriA~AvdsfiyfanI 336 (1189)
T KOG2041|consen 312 TGLSWEGTGLRIAIAVDSFIYFANI 336 (1189)
T ss_pred eeeEEcCCceEEEEEecceEEEEee
Confidence 9999866544333444555554333
No 307
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.16 E-value=0.003 Score=65.82 Aligned_cols=199 Identities=17% Similarity=0.152 Sum_probs=118.5
Q ss_pred cceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccC------------cCEEEEEEccCCC--EEEEE
Q 006825 411 RRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHN------------GSIWSIKFSLDGR--YLASA 474 (630)
Q Consensus 411 ~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt------------~~V~sVaFSpDG~--~LASg 474 (630)
...|+++.|...+ +++|...|+|.+|......--......+|++|. ..|..|.|-.++. .+.-.
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 3468888888887 666666699999975422100011234566664 5688898877553 45556
Q ss_pred eCCCcEEEEECcCCcee----------------------eeeeccc----------------ccCcccceEEEEECCCCC
Q 006825 475 GEDCVIHVWQVVESERK----------------------GELLEKQ----------------EDGHLNMLLLANGSPEPT 516 (630)
Q Consensus 475 S~DgtIrVWDl~tg~~~----------------------~~l~~~~----------------~~gh~~~V~svafSpdg~ 516 (630)
..|++|++|.+...... .++.... ...|...+.++.|..|..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 78999999988543110 0000000 134555667778877777
Q ss_pred EEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCC-----CCEEEEEEcCC--CeEEEEECCCc
Q 006825 517 SLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHL-----DDVLDLSWSKS--QHLLSSSMDKT 589 (630)
Q Consensus 517 ~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs-----~~V~sLafSPd--~~LaSgS~Dgt 589 (630)
.++++ .|-.|.+|+... +|+.+ . +..++.|. .-|++..|+|. ..+.-.+.-|+
T Consensus 186 t~lSa-DdLrINLWnl~i--------~D~sF---n--------IVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~ 245 (460)
T COG5170 186 TLLSA-DDLRINLWNLEI--------IDGSF---N--------IVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGE 245 (460)
T ss_pred eeeec-cceeeeeccccc--------cCCce---E--------EEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCc
Confidence 77665 566665555432 11111 1 22223333 45889999997 78888888999
Q ss_pred EEEEeCCCCc-EE---EEEe-------c------CCceEEEE-cCCCcEEEEecceec
Q 006825 590 VRLWHLSSKT-CL---KIFS-------H------SDYDISLV-DRLMLRFAYGAFLNV 629 (630)
Q Consensus 590 VrIWDl~tg~-~l---~t~~-------H------~~~V~sVa-s~~~~~lAsgs~~nI 629 (630)
|+|-|++... |. ..|. | ...|..+. .+++.++++-....|
T Consensus 246 Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltv 303 (460)
T COG5170 246 IKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTV 303 (460)
T ss_pred EEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceE
Confidence 9999998421 11 1111 1 22334444 888888887665544
No 308
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.01 E-value=0.031 Score=65.10 Aligned_cols=178 Identities=15% Similarity=0.082 Sum_probs=112.1
Q ss_pred eEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcC-EEEEEEccCCCEEEEEeCCCc-----EEEEECc
Q 006825 413 SSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGS-IWSIKFSLDGRYLASAGEDCV-----IHVWQVV 486 (630)
Q Consensus 413 ~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~-V~sVaFSpDG~~LASgS~Dgt-----IrVWDl~ 486 (630)
.+++..-+...++-|+.+|.|.+++-.-. .++.+++|... |..+....+-.+|++-++|.. |+||+++
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~s~~------~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~le 100 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNSSFQ------LIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLE 100 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEecccce------eeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccc
Confidence 44454444444888999999999875432 44778888887 554444444479999988865 9999996
Q ss_pred CC------ceeeeeecc--cccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCC
Q 006825 487 ES------ERKGELLEK--QEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDK 558 (630)
Q Consensus 487 tg------~~~~~l~~~--~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk 558 (630)
.- +++.+.... .......++.+++.+.+-+.+|+|..+|.|....-. + +-+ .|.
T Consensus 101 k~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GD-------------i----~RD-rgs 162 (933)
T KOG2114|consen 101 KVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGD-------------I----LRD-RGS 162 (933)
T ss_pred ccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCc-------------c----hhc-ccc
Confidence 43 222111111 112235667899999999999999999987321100 0 000 111
Q ss_pred ceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCc-EEEEEe-cCCceEEEE
Q 006825 559 PICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKT-CLKIFS-HSDYDISLV 614 (630)
Q Consensus 559 ~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~-~l~t~~-H~~~V~sVa 614 (630)
...-...-..+|+.|+|..+ ..++-...-..|.+|.+.... .+.++. |+..+.|..
T Consensus 163 r~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss 221 (933)
T KOG2114|consen 163 RQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSS 221 (933)
T ss_pred ceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeee
Confidence 11112233468999999877 443455555679999998444 244565 888888888
No 309
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.00 E-value=0.00071 Score=78.15 Aligned_cols=148 Identities=14% Similarity=0.150 Sum_probs=106.9
Q ss_pred eeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCee
Q 006825 448 KCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHL 527 (630)
Q Consensus 448 ~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I 527 (630)
...+|..|+...+|++|+-+.++|+.|+..|.||++++.+|..... ..+|...|+-+.-+.+|..+++.+.-..-
T Consensus 1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s-----~ncH~SavT~vePs~dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEES-----VNCHQSAVTLVEPSVDGSTQLTSSSSSSP 1167 (1516)
T ss_pred cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccccc-----ccccccccccccccCCcceeeeeccccCc
Confidence 3456788999999999999999999999999999999999987665 48999999999999898888776543320
Q ss_pred eeecccccccccccccCccccccEEEeC--CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEE
Q 006825 528 EKKRRGRSINRKSLSLDHMVVPETVFAL--SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIF 604 (630)
Q Consensus 528 ~i~~~~~~~~~~s~s~d~~i~~~~Vwdl--sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~ 604 (630)
...+|++ .+.+.++|.+ -.++.|+.. +.-+-|..-..+.|||+.|+..+.++
T Consensus 1168 ---------------------lsaLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~ty 1222 (1516)
T KOG1832|consen 1168 ---------------------LSALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTY 1222 (1516)
T ss_pred ---------------------hHHHhccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHh
Confidence 0157877 5667666653 367899887 44444444456789999999877774
Q ss_pred -e---cCCceEEEE--cCCCcEEEEec
Q 006825 605 -S---HSDYDISLV--DRLMLRFAYGA 625 (630)
Q Consensus 605 -~---H~~~V~sVa--s~~~~~lAsgs 625 (630)
. ...+-..++ +|....+.-++
T Consensus 1223 lt~~~~~~y~~n~a~FsP~D~LIlndG 1249 (1516)
T KOG1832|consen 1223 LTDTVTSSYSNNLAHFSPCDTLILNDG 1249 (1516)
T ss_pred cCcchhhhhhccccccCCCcceEeeCc
Confidence 2 233333444 55555544443
No 310
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=96.92 E-value=0.041 Score=63.49 Aligned_cols=134 Identities=9% Similarity=0.004 Sum_probs=97.0
Q ss_pred eeEEEEcCCCceEeeecceeeecCccceeEEEeec---------------ceEeecCCCccEecccCCCCceeEEecCCc
Q 006825 315 WKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---------------NVEEGNKDSFDLNNNGSSGGGMKSKKKGSW 379 (630)
Q Consensus 315 ~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---------------~laSgS~D~tvr~vWD~~tG~~~~~lk~gH 379 (630)
...+-|..+-+.+ +.+.-|...|+.+.+.| .||++---|.|. +||...+..+-.+. .|
T Consensus 36 lV~VVDs~s~q~i-----qsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi-l~d~~~~s~~~~l~-~~ 108 (1062)
T KOG1912|consen 36 LVSVVDSRSLQLI-----QSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII-LVDFVLASVINWLS-HS 108 (1062)
T ss_pred eEEEEehhhhhhh-----hccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEE-EEEehhhhhhhhhc-CC
Confidence 3445555555555 88888999999999877 477777789999 99999999998888 89
Q ss_pred cCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCE
Q 006825 380 FKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSI 459 (630)
Q Consensus 380 ~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V 459 (630)
.++|..+.|-+.- +++.+.++.-....+|.+|+..+++. ......-....
T Consensus 109 ~~~~qdl~W~~~r-------------------------d~Srd~LlaIh~ss~lvLwntdtG~k-----~Wk~~ys~~iL 158 (1062)
T KOG1912|consen 109 NDSVQDLCWVPAR-------------------------DDSRDVLLAIHGSSTLVLWNTDTGEK-----FWKYDYSHEIL 158 (1062)
T ss_pred Ccchhheeeeecc-------------------------CcchheeEEecCCcEEEEEEccCCce-----eeccccCCcce
Confidence 9999888887731 23446666666677899998888753 22223333466
Q ss_pred EEEEEcc-CCCEEEEEeCCCcEEEEEC
Q 006825 460 WSIKFSL-DGRYLASAGEDCVIHVWQV 485 (630)
Q Consensus 460 ~sVaFSp-DG~~LASgS~DgtIrVWDl 485 (630)
.|+.|.| |.+.+..-+..|.|-+-+.
T Consensus 159 s~f~~DPfd~rh~~~l~s~g~vl~~~~ 185 (1062)
T KOG1912|consen 159 SCFRVDPFDSRHFCVLGSKGFVLSCKD 185 (1062)
T ss_pred eeeeeCCCCcceEEEEccCceEEEEec
Confidence 7799998 7776666566676666554
No 311
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.90 E-value=0.036 Score=64.20 Aligned_cols=136 Identities=13% Similarity=0.069 Sum_probs=89.8
Q ss_pred ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecC
Q 006825 350 NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQE 429 (630)
Q Consensus 350 ~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~ 429 (630)
+++|+|.|+++. |-.+-+++...+.. ..+.|++||++|+-.+- ....+++|+.
T Consensus 85 y~asCS~DGkv~-I~sl~~~~~~~~~d--f~rpiksial~Pd~~~~------------------------~sk~fv~GG~ 137 (846)
T KOG2066|consen 85 YVASCSDDGKVV-IGSLFTDDEITQYD--FKRPIKSIALHPDFSRQ------------------------QSKQFVSGGM 137 (846)
T ss_pred eEEEecCCCcEE-EeeccCCccceeEe--cCCcceeEEeccchhhh------------------------hhhheeecCc
Confidence 799999999998 88888887776654 67899999999972110 1112677777
Q ss_pred CcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeeccc-ccCcccceEE
Q 006825 430 RVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQ-EDGHLNMLLL 508 (630)
Q Consensus 430 Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~-~~gh~~~V~s 508 (630)
.| +.++...--... ....+..-.++|.+|.| .|+++|-++.+| |+|+|+.+++.+..+.... .......-..
T Consensus 138 ag-lvL~er~wlgnk---~~v~l~~~eG~I~~i~W--~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpph 210 (846)
T KOG2066|consen 138 AG-LVLSERNWLGNK---DSVVLSEGEGPIHSIKW--RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPH 210 (846)
T ss_pred ce-EEEehhhhhcCc---cceeeecCccceEEEEe--cCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCc
Confidence 77 666654211110 11145667889999999 789999998887 8999999888776542110 0111112235
Q ss_pred EEECCCCCEEE
Q 006825 509 ANGSPEPTSLS 519 (630)
Q Consensus 509 vafSpdg~~la 519 (630)
+.|.++.++++
T Consensus 211 l~W~~~~~LVI 221 (846)
T KOG2066|consen 211 LHWQDEDRLVI 221 (846)
T ss_pred eEecCCCeEEE
Confidence 77777665443
No 312
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.85 E-value=0.25 Score=49.17 Aligned_cols=149 Identities=9% Similarity=-0.019 Sum_probs=81.3
Q ss_pred EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcc
Q 006825 424 SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHL 503 (630)
Q Consensus 424 l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~ 503 (630)
++.+..++.|..||..+++..- ...+.+..... .. ..+..++.+..|+.|..+|+.+|+.+.+..........
T Consensus 39 v~~~~~~~~l~~~d~~tG~~~W---~~~~~~~~~~~---~~-~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~ 111 (238)
T PF13360_consen 39 VYVASGDGNLYALDAKTGKVLW---RFDLPGPISGA---PV-VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG 111 (238)
T ss_dssp EEEEETTSEEEEEETTTSEEEE---EEECSSCGGSG---EE-EETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS
T ss_pred EEEEcCCCEEEEEECCCCCEEE---Eeeccccccce---ee-ecccccccccceeeeEecccCCcceeeeeccccccccc
Confidence 4555678889999987775311 11222211111 12 24455666678889999999999988773211101111
Q ss_pred cceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCC----------E-E
Q 006825 504 NMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDD----------V-L 571 (630)
Q Consensus 504 ~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~----------V-~ 571 (630)
..........+..++.+..++.| ..+++ +|+.+..+..+... + .
T Consensus 112 -~~~~~~~~~~~~~~~~~~~~g~l-----------------------~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~ 167 (238)
T PF13360_consen 112 -VRSSSSPAVDGDRLYVGTSSGKL-----------------------VALDPKTGKLLWKYPVGEPRGSSPISSFSDING 167 (238)
T ss_dssp -TB--SEEEEETTEEEEEETCSEE-----------------------EEEETTTTEEEEEEESSTT-SS--EEEETTEEE
T ss_pred -cccccCceEecCEEEEEeccCcE-----------------------EEEecCCCcEEEEeecCCCCCCcceeeeccccc
Confidence 11111222236677777777777 45554 56665555443321 1 2
Q ss_pred EEEEcCCCeEEEEECCCc-EEEEeCCCCcEEEEEe
Q 006825 572 DLSWSKSQHLLSSSMDKT-VRLWHLSSKTCLKIFS 605 (630)
Q Consensus 572 sLafSPd~~LaSgS~Dgt-VrIWDl~tg~~l~t~~ 605 (630)
.+.+. ++.+..++.++. +.+ |+.+++.+....
T Consensus 168 ~~~~~-~~~v~~~~~~g~~~~~-d~~tg~~~w~~~ 200 (238)
T PF13360_consen 168 SPVIS-DGRVYVSSGDGRVVAV-DLATGEKLWSKP 200 (238)
T ss_dssp EEECC-TTEEEEECCTSSEEEE-ETTTTEEEEEEC
T ss_pred ceEEE-CCEEEEEcCCCeEEEE-ECCCCCEEEEec
Confidence 23333 346777777775 566 999998665333
No 313
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.82 E-value=0.13 Score=56.33 Aligned_cols=197 Identities=9% Similarity=-0.015 Sum_probs=98.4
Q ss_pred ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecC
Q 006825 350 NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQE 429 (630)
Q Consensus 350 ~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~ 429 (630)
.+..++.++.+. ..|.++|+.+-+.... ...+ .. .+....+. ....++.+..
T Consensus 162 ~v~v~~~~g~l~-ald~~tG~~~W~~~~~-~~~~-----~~-----------------~~~~sP~v----~~~~v~~~~~ 213 (394)
T PRK11138 162 LVLVHTSNGMLQ-ALNESDGAVKWTVNLD-VPSL-----TL-----------------RGESAPAT----AFGGAIVGGD 213 (394)
T ss_pred EEEEECCCCEEE-EEEccCCCEeeeecCC-CCcc-----cc-----------------cCCCCCEE----ECCEEEEEcC
Confidence 455566778888 8899999988776621 1000 00 00001111 1123455666
Q ss_pred CcEEEEEeCCCCcccceeeeeEec-ccC-cCEEEEEEcc--CCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccc
Q 006825 430 RVRVRQYGKSCKDLTALYKCQEIQ-AHN-GSIWSIKFSL--DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNM 505 (630)
Q Consensus 430 Dg~VriWd~~~~el~~~~~v~tL~-gHt-~~V~sVaFSp--DG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~ 505 (630)
++.+..++..+++..=.+....-. .+. .....+.-+| .+..|+.++.++.+...|+.+|+.+.... .+.
T Consensus 214 ~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~----~~~--- 286 (394)
T PRK11138 214 NGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKRE----YGS--- 286 (394)
T ss_pred CCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeec----CCC---
Confidence 777777777665431110000000 000 0011111222 34556677889999999999998765431 111
Q ss_pred eEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCCCeEEEEE
Q 006825 506 LLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSS 585 (630)
Q Consensus 506 V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd~~LaSgS 585 (630)
...+.. .+..+..+..++.+...+.... ..+|.... + .+. ........ +++|+.++
T Consensus 287 ~~~~~~--~~~~vy~~~~~g~l~ald~~tG--------------~~~W~~~~-----~-~~~-~~~sp~v~-~g~l~v~~ 342 (394)
T PRK11138 287 VNDFAV--DGGRIYLVDQNDRVYALDTRGG--------------VELWSQSD-----L-LHR-LLTAPVLY-NGYLVVGD 342 (394)
T ss_pred ccCcEE--ECCEEEEEcCCCeEEEEECCCC--------------cEEEcccc-----c-CCC-cccCCEEE-CCEEEEEe
Confidence 111111 2344445556666622221110 02333210 0 010 11111221 37888999
Q ss_pred CCCcEEEEeCCCCcEEEEEe
Q 006825 586 MDKTVRLWHLSSKTCLKIFS 605 (630)
Q Consensus 586 ~DgtVrIWDl~tg~~l~t~~ 605 (630)
.||.|.+.|..+|+.+..++
T Consensus 343 ~~G~l~~ld~~tG~~~~~~~ 362 (394)
T PRK11138 343 SEGYLHWINREDGRFVAQQK 362 (394)
T ss_pred CCCEEEEEECCCCCEEEEEE
Confidence 99999999999999988876
No 314
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=96.80 E-value=0.014 Score=65.56 Aligned_cols=74 Identities=11% Similarity=-0.050 Sum_probs=60.9
Q ss_pred ccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccc
Q 006825 454 AHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRG 533 (630)
Q Consensus 454 gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~ 533 (630)
.+...|.+++++|+..+|+.|..||+|++||...+.... ....-....++|+|+|.+++.|+.-|.+.+|+..
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~-------~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLL-------AKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeee-------eeecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 477889999999999999999999999999997653322 2233456789999999999999999999777754
Q ss_pred c
Q 006825 534 R 534 (630)
Q Consensus 534 ~ 534 (630)
-
T Consensus 330 L 330 (545)
T PF11768_consen 330 L 330 (545)
T ss_pred c
Confidence 3
No 315
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=96.74 E-value=0.095 Score=54.45 Aligned_cols=192 Identities=11% Similarity=0.050 Sum_probs=105.9
Q ss_pred eeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCcc
Q 006825 261 MSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSP 340 (630)
Q Consensus 261 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~ 340 (630)
++.|||+..| |-++..+..++.||-....|++.- ..+.. |. -+.
T Consensus 49 l~WSpD~tlL--------------a~a~S~G~i~vfdl~g~~lf~I~p-~~~~~---------~d------------~~~ 92 (282)
T PF15492_consen 49 LAWSPDCTLL--------------AYAESTGTIRVFDLMGSELFVIPP-AMSFP---------GD------------LSD 92 (282)
T ss_pred EEECCCCcEE--------------EEEcCCCeEEEEecccceeEEcCc-ccccC---------Cc------------ccc
Confidence 6899999999 566777899999997655554422 22111 10 123
Q ss_pred ceeEEEeecc---------eEeecCCCccEecccCC-----CCceeEEec--CCccCCEEEEEEcCCCCeEEeecCCC-C
Q 006825 341 IVQELMRRQN---------VEEGNKDSFDLNNNGSS-----GGGMKSKKK--GSWFKSIRTVASSVTGHKERRSSDER-D 403 (630)
Q Consensus 341 ~V~~Lafs~~---------laSgS~D~tvr~vWD~~-----tG~~~~~lk--~gH~~~V~sVAfSpdG~~lasgS~D~-d 403 (630)
+|..|+|.+. |..-..++.++ -+-+. ..+..+.+. ..+...|.++.+.|.-++|.-|+... +
T Consensus 93 Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~-Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~ 171 (282)
T PF15492_consen 93 AIAGLIFLEYKKSAQWSYELLVINYRGQLR-SYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQ 171 (282)
T ss_pred ceeeeEeeccccccccceeEEEEeccceee-eEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCC
Confidence 3444444331 22223334444 33221 233444433 35678999999999877665555443 2
Q ss_pred CccccCCcceEE---EeecCCCe-EEEecCCcEE------EEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEE
Q 006825 404 TSSEKGGRRSSS---ATDDSQDV-SFHGQERVRV------RQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLAS 473 (630)
Q Consensus 404 t~s~~gh~~~Vs---a~~~s~d~-l~Sgs~Dg~V------riWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LAS 473 (630)
.+..+.-...++ -+...+.. .+....+... -+|.+-+.. ++. ....-...|..|..||||++||+
T Consensus 172 ~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~---~fs--~~~~~~d~i~kmSlSPdg~~La~ 246 (282)
T PF15492_consen 172 DGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFK---FFS--RQGQEQDGIFKMSLSPDGSLLAC 246 (282)
T ss_pred CccccccccCceEEEEcCCCCcEEEccccCccccccccccceeecccee---eee--ccccCCCceEEEEECCCCCEEEE
Confidence 222222222222 23444444 3333322221 222221110 011 11234678999999999999999
Q ss_pred EeCCCcEEEEECcCCceeeee
Q 006825 474 AGEDCVIHVWQVVESERKGEL 494 (630)
Q Consensus 474 gS~DgtIrVWDl~tg~~~~~l 494 (630)
...+|.|.||++..-...+..
T Consensus 247 ih~sG~lsLW~iPsL~~~~~W 267 (282)
T PF15492_consen 247 IHFSGSLSLWEIPSLRLQRSW 267 (282)
T ss_pred EEcCCeEEEEecCcchhhccc
Confidence 999999999999876666554
No 316
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=96.72 E-value=0.84 Score=55.81 Aligned_cols=204 Identities=15% Similarity=0.125 Sum_probs=115.9
Q ss_pred CEEEEEEcCCCCeEEeecCCCCCc------------c----ccCCcceEEEeecCCCe-EEEecC----CcEEEEEeCCC
Q 006825 382 SIRTVASSVTGHKERRSSDERDTS------------S----EKGGRRSSSATDDSQDV-SFHGQE----RVRVRQYGKSC 440 (630)
Q Consensus 382 ~V~sVAfSpdG~~lasgS~D~dt~------------s----~~gh~~~Vsa~~~s~d~-l~Sgs~----Dg~VriWd~~~ 440 (630)
.--.++|-.||+|+|.++-+..++ . ...-.+.-.++++.|.| ++++.. ...|.+|...+
T Consensus 211 ~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNG 290 (928)
T PF04762_consen 211 GRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNG 290 (928)
T ss_pred CceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCC
Confidence 444589999999999877533211 0 11112223455666777 433332 36778887643
Q ss_pred CcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCc--eeeeeecccccCcccceEEEEECCC-CCE
Q 006825 441 KDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE--RKGELLEKQEDGHLNMLLLANGSPE-PTS 517 (630)
Q Consensus 441 ~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~--~~~~l~~~~~~gh~~~V~svafSpd-g~~ 517 (630)
-.- +.+.+ .+......|..|+|++|+..||.--.|. |.+|-..+-. ..+++. ......+..+.|+|. ...
T Consensus 291 Lrh-geF~l-~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~----~~~~~~~~~~~Wdpe~p~~ 363 (928)
T PF04762_consen 291 LRH-GEFTL-RFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIR----FSSSESVNFVKWDPEKPLR 363 (928)
T ss_pred cEe-eeEec-CCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEE----ccCCCCCCceEECCCCCCE
Confidence 221 11111 1234567899999999999999988766 9999886643 223321 222233445999997 444
Q ss_pred EEEeeCCCeeeeecccccccccc-ccc-CccccccEEEeCCCC----------------ceEEeccCCCCEEEEEEcCC-
Q 006825 518 LSPKHLDNHLEKKRRGRSINRKS-LSL-DHMVVPETVFALSDK----------------PICSFQGHLDDVLDLSWSKS- 578 (630)
Q Consensus 518 lasgs~Dg~I~i~~~~~~~~~~s-~s~-d~~i~~~~Vwdlsgk----------------~l~tL~GHs~~V~sLafSPd- 578 (630)
+.....++.+............. ..+ |..+ +--+.|. ..+++. -...|.+++|+++
T Consensus 364 L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~----vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~~~ 438 (928)
T PF04762_consen 364 LHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGT----VAVIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSPSN 438 (928)
T ss_pred EEEEecCCcEEEEEEEEEEEecCCCCccCceE----EEEEeCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeCCC
Confidence 55555556554333322111110 001 1111 1111111 122333 3467999999998
Q ss_pred CeEEEEECCCcEEEEeCCC
Q 006825 579 QHLLSSSMDKTVRLWHLSS 597 (630)
Q Consensus 579 ~~LaSgS~DgtVrIWDl~t 597 (630)
..++.-..||+|.+|....
T Consensus 439 ~~~avl~~d~~l~~~~~~~ 457 (928)
T PF04762_consen 439 SRFAVLTSDGSLSIYEWDL 457 (928)
T ss_pred CeEEEEECCCCEEEEEecC
Confidence 6799999999999998543
No 317
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=96.65 E-value=1 Score=47.94 Aligned_cols=228 Identities=14% Similarity=0.046 Sum_probs=125.7
Q ss_pred CCCceeEEEEcCCCceE---eeecceeeecCccceeEEEeec---ceEe-----ecCCCccEecccCC-CCceeEEecCC
Q 006825 311 EDGTWKKVKEVGTGRQL---TIEEFEMCVGHSPIVQELMRRQ---NVEE-----GNKDSFDLNNNGSS-GGGMKSKKKGS 378 (630)
Q Consensus 311 ~dg~~~~l~dv~TG~~l---t~eef~~l~GHs~~V~~Lafs~---~laS-----gS~D~tvr~vWD~~-tG~~~~~lk~g 378 (630)
.-|.|..++|..+|+.+ ...+-.-|.||. +|++ .|.+ ....+.|- |||+. +.+.+..+. .
T Consensus 25 RPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg------~fs~dG~~LytTEnd~~~g~G~Ig-Vyd~~~~~~ri~E~~-s 96 (305)
T PF07433_consen 25 RPGTFALVFDCRTGQLLQRLWAPPGRHFYGHG------VFSPDGRLLYTTENDYETGRGVIG-VYDAARGYRRIGEFP-S 96 (305)
T ss_pred CCCcEEEEEEcCCCceeeEEcCCCCCEEecCE------EEcCCCCEEEEeccccCCCcEEEE-EEECcCCcEEEeEec-C
Confidence 46888999999998876 223345577774 4554 2222 23346666 99998 556666665 2
Q ss_pred ccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEe--cccC
Q 006825 379 WFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEI--QAHN 456 (630)
Q Consensus 379 H~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL--~gHt 456 (630)
|-=.=--+.+.|||+.|+.+...-.|....| +...+- ...+-.+-..|..++++. ....| .-|.
T Consensus 97 ~GIGPHel~l~pDG~tLvVANGGI~Thpd~G-R~kLNl----------~tM~psL~~ld~~sG~ll---~q~~Lp~~~~~ 162 (305)
T PF07433_consen 97 HGIGPHELLLMPDGETLVVANGGIETHPDSG-RAKLNL----------DTMQPSLVYLDARSGALL---EQVELPPDLHQ 162 (305)
T ss_pred CCcChhhEEEcCCCCEEEEEcCCCccCcccC-ceecCh----------hhcCCceEEEecCCCcee---eeeecCccccc
Confidence 2211123788999987776543321111110 001111 111222344444455432 12335 3488
Q ss_pred cCEEEEEEccCCCEEEEEeCCCc-------EEEEECcCCceeeeee--cccccCcccceEEEEECCCCCEEEEee-CCCe
Q 006825 457 GSIWSIKFSLDGRYLASAGEDCV-------IHVWQVVESERKGELL--EKQEDGHLNMLLLANGSPEPTSLSPKH-LDNH 526 (630)
Q Consensus 457 ~~V~sVaFSpDG~~LASgS~Dgt-------IrVWDl~tg~~~~~l~--~~~~~gh~~~V~svafSpdg~~lasgs-~Dg~ 526 (630)
-+|.-|++.++|..++-.-..+- |-+|+- ++.+..+. ......-.+.+-+|++++++.+++..+ ..+.
T Consensus 163 lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~ 240 (305)
T PF07433_consen 163 LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGR 240 (305)
T ss_pred cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCE
Confidence 89999999999986665543332 223332 22221111 111133446788999999998776554 4455
Q ss_pred eeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCCCeEEEEECC
Q 006825 527 LEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKSQHLLSSSMD 587 (630)
Q Consensus 527 I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd~~LaSgS~D 587 (630)
+ .+|+. +++.+.... -..+..|+-.++++++|.+.-
T Consensus 241 ~-----------------------~~~d~~tg~~~~~~~--l~D~cGva~~~~~f~~ssG~G 277 (305)
T PF07433_consen 241 V-----------------------AVWDAATGRLLGSVP--LPDACGVAPTDDGFLVSSGQG 277 (305)
T ss_pred E-----------------------EEEECCCCCEeeccc--cCceeeeeecCCceEEeCCCc
Confidence 5 78876 666655432 235677777666766665543
No 318
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=96.59 E-value=0.099 Score=59.00 Aligned_cols=64 Identities=16% Similarity=0.102 Sum_probs=50.2
Q ss_pred EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeee
Q 006825 424 SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGEL 494 (630)
Q Consensus 424 l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l 494 (630)
++.|+.||.|.+||...+ +..+..+.-..+.++|+|+|.+|+.|+.-|.|.+||+.-.....++
T Consensus 274 LvlGC~DgSiiLyD~~~~-------~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~~qL 337 (545)
T PF11768_consen 274 LVLGCEDGSIILYDTTRG-------VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIKMQL 337 (545)
T ss_pred EEEEecCCeEEEEEcCCC-------eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCccceee
Confidence 578899999999998655 2223344556789999999999999999999999999765544443
No 319
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.36 E-value=0.57 Score=50.61 Aligned_cols=217 Identities=13% Similarity=0.072 Sum_probs=102.6
Q ss_pred EEEEEEcCCCCeEEeecCCC-CCcc------ccCCc--ceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEec
Q 006825 383 IRTVASSVTGHKERRSSDER-DTSS------EKGGR--RSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQ 453 (630)
Q Consensus 383 V~sVAfSpdG~~lasgS~D~-dt~s------~~gh~--~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~ 453 (630)
-.++.|||||++|+.-..|. .... ...+. -.+........|- ..-..++.++++.+++...+.....+.
T Consensus 103 ~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~--~np~v~l~v~~~~~~~~~~~~~~~~~~ 180 (353)
T PF00930_consen 103 RSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGD--PNPRVSLFVVDLASGKTTELDPPNSLN 180 (353)
T ss_dssp SBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS-----EEEEEEEESSSTCCCEE---HHHH
T ss_pred ccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCC--cCCceEEEEEECCCCcEEEeeeccccC
Confidence 35689999999998876554 1111 11110 1222222221110 002345778898877643222111123
Q ss_pred ccCcCEEEEEEccCCCEEEE--EeCCC---cEEEEECcCCceeeeeecccccCcccceEEEEEC-CCCCEEEE-eeCCCe
Q 006825 454 AHNGSIWSIKFSLDGRYLAS--AGEDC---VIHVWQVVESERKGELLEKQEDGHLNMLLLANGS-PEPTSLSP-KHLDNH 526 (630)
Q Consensus 454 gHt~~V~sVaFSpDG~~LAS--gS~Dg---tIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafS-pdg~~las-gs~Dg~ 526 (630)
.-...+..+.|.++++.|+. -..+. .+.+.|+.++.+...+. ....+.........+. +++..++. ...+|-
T Consensus 181 ~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~-e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~ 259 (353)
T PF00930_consen 181 PQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLE-ETSDGWVDVYDPPHFLGPDGNEFLWISERDGY 259 (353)
T ss_dssp TSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEE-EESSSSSSSSSEEEE-TTTSSEEEEEEETTSS
T ss_pred CCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEE-ecCCcceeeecccccccCCCCEEEEEEEcCCC
Confidence 44667999999999993333 34443 35567777665433321 1112222222234443 55444443 334442
Q ss_pred eeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEE-EEEcCC-CeE-EEEECCC--cEEEE--eCCCCc
Q 006825 527 LEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLD-LSWSKS-QHL-LSSSMDK--TVRLW--HLSSKT 599 (630)
Q Consensus 527 I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~s-LafSPd-~~L-aSgS~Dg--tVrIW--Dl~tg~ 599 (630)
-.+ .+.+..+.....+....-.|+. +.|.++ +.| .++..+. .-.|| ++..+.
T Consensus 260 ~hl---------------------y~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~ 318 (353)
T PF00930_consen 260 RHL---------------------YLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG 318 (353)
T ss_dssp EEE---------------------EEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT
T ss_pred cEE---------------------EEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC
Confidence 211 4445566666677666667755 667777 444 4565533 33444 444234
Q ss_pred EEEEEecCCce-EEEE-cCCCcEEEE
Q 006825 600 CLKIFSHSDYD-ISLV-DRLMLRFAY 623 (630)
Q Consensus 600 ~l~t~~H~~~V-~sVa-s~~~~~lAs 623 (630)
.+..+...... ..+. +|++.+++.
T Consensus 319 ~~~~LT~~~~~~~~~~~Spdg~y~v~ 344 (353)
T PF00930_consen 319 EPKCLTCEDGDHYSASFSPDGKYYVD 344 (353)
T ss_dssp EEEESSTTSSTTEEEEE-TTSSEEEE
T ss_pred CeEeccCCCCCceEEEECCCCCEEEE
Confidence 44555422222 3455 777666654
No 320
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=96.28 E-value=0.13 Score=59.64 Aligned_cols=223 Identities=13% Similarity=0.108 Sum_probs=132.9
Q ss_pred EEEeec--ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCC
Q 006825 344 ELMRRQ--NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQ 421 (630)
Q Consensus 344 ~Lafs~--~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~ 421 (630)
++-++| .+|=||. ..|. +=|..+-+.++.+. .|...|.+|-|.|--. |....+ ..-.+
T Consensus 20 A~Dw~~~GLiAygsh-slV~-VVDs~s~q~iqsie-~h~s~V~~VrWap~~~----------------p~~llS-~~~~~ 79 (1062)
T KOG1912|consen 20 AADWSPSGLIAYGSH-SLVS-VVDSRSLQLIQSIE-LHQSAVTSVRWAPAPS----------------PRDLLS-PSSSQ 79 (1062)
T ss_pred ccccCccceEEEecC-ceEE-EEehhhhhhhhccc-cCccceeEEEeccCCC----------------chhccC-ccccc
Confidence 334444 3444443 3444 77888889999998 8999999999999421 111100 00122
Q ss_pred CeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc---CC-CEEEEEeCCCcEEEEECcCCceeeeeecc
Q 006825 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL---DG-RYLASAGEDCVIHVWQVVESERKGELLEK 497 (630)
Q Consensus 422 d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp---DG-~~LASgS~DgtIrVWDl~tg~~~~~l~~~ 497 (630)
-.++++.-.|+|-+||....- .+..|..|..+|..++|-+ +. .+|+.-..-.+|-+|+..+|+.....
T Consensus 80 lliAsaD~~GrIil~d~~~~s-----~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~--- 151 (1062)
T KOG1912|consen 80 LLIASADISGRIILVDFVLAS-----VINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKY--- 151 (1062)
T ss_pred eeEEeccccCcEEEEEehhhh-----hhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecc---
Confidence 337888889999999987653 2455788999999999976 44 35666666789999999999876652
Q ss_pred cccCcccceEEEEECC-CCCEEEEeeCCCeeeeecc-cccccccccccCccccccEEEeCCCC--ceE-------EeccC
Q 006825 498 QEDGHLNMLLLANGSP-EPTSLSPKHLDNHLEKKRR-GRSINRKSLSLDHMVVPETVFALSDK--PIC-------SFQGH 566 (630)
Q Consensus 498 ~~~gh~~~V~svafSp-dg~~lasgs~Dg~I~i~~~-~~~~~~~s~s~d~~i~~~~Vwdlsgk--~l~-------tL~GH 566 (630)
........++.+.| |.+.+..-+..|.+.+.+. +..... .+.+.+.++.. .+. +-..|
T Consensus 152 --~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~---------~pgk~~qI~sd~Sdl~~lere~at~ns~ 220 (1062)
T KOG1912|consen 152 --DYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPD---------VPGKEFQITSDHSDLAHLERETATGNST 220 (1062)
T ss_pred --ccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCC---------CCceeEEEecCccchhhhhhhhhccccc
Confidence 33334556677777 3455555445555432221 111000 00011211100 000 00001
Q ss_pred CC---------CEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825 567 LD---------DVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS 605 (630)
Q Consensus 567 s~---------~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~ 605 (630)
+. ....++|+|. +.++-.-.-..+.|+|++-..|+.++.
T Consensus 221 ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvp 269 (1062)
T KOG1912|consen 221 TSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVP 269 (1062)
T ss_pred cCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEE
Confidence 10 0234677887 555555567789999999999998887
No 321
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.19 E-value=0.34 Score=57.59 Aligned_cols=143 Identities=9% Similarity=0.016 Sum_probs=94.4
Q ss_pred eEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCC
Q 006825 351 VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQER 430 (630)
Q Consensus 351 laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~D 430 (630)
|........+. --|+++|+.+...+.+....|. .|.|+.|.- ...+...+.|-.+
T Consensus 497 l~~~~~~~~ly-~mDLe~GKVV~eW~~~~~~~v~--~~~p~~K~a----------------------qlt~e~tflGls~ 551 (794)
T PF08553_consen 497 LLDPNNPNKLY-KMDLERGKVVEEWKVHDDIPVV--DIAPDSKFA----------------------QLTNEQTFLGLSD 551 (794)
T ss_pred eecCCCCCceE-EEecCCCcEEEEeecCCCccee--Eeccccccc----------------------ccCCCceEEEECC
Confidence 44555566676 6789999999998843333364 444543311 1122335777777
Q ss_pred cEEEEEeCCCCcccceeeee-Ee--cccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceE
Q 006825 431 VRVRQYGKSCKDLTALYKCQ-EI--QAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLL 507 (630)
Q Consensus 431 g~VriWd~~~~el~~~~~v~-tL--~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~ 507 (630)
..+..||.+-.. . .++. .+ ........|++-+.+| +||.|+.+|.|||||- .|...+++ +.+-..+|.
T Consensus 552 n~lfriDpR~~~-~--k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~----lp~lG~pI~ 622 (794)
T PF08553_consen 552 NSLFRIDPRLSG-N--KLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTA----LPGLGDPII 622 (794)
T ss_pred CceEEeccCCCC-C--ceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhc----CCCCCCCee
Confidence 888899876432 1 1111 11 1234567888888787 5889999999999994 45555554 466678999
Q ss_pred EEEECCCCCEEEEeeCCCee
Q 006825 508 LANGSPEPTSLSPKHLDNHL 527 (630)
Q Consensus 508 svafSpdg~~lasgs~Dg~I 527 (630)
.|..+.||++|++.+..-.+
T Consensus 623 ~iDvt~DGkwilaTc~tyLl 642 (794)
T PF08553_consen 623 GIDVTADGKWILATCKTYLL 642 (794)
T ss_pred EEEecCCCcEEEEeecceEE
Confidence 99999999999887655544
No 322
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.17 E-value=0.0017 Score=73.04 Aligned_cols=193 Identities=10% Similarity=0.086 Sum_probs=111.9
Q ss_pred ceEeecCCCccEecccCCCC-ceeEEecCCccCCEEEEEEcC-CCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEe
Q 006825 350 NVEEGNKDSFDLNNNGSSGG-GMKSKKKGSWFKSIRTVASSV-TGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHG 427 (630)
Q Consensus 350 ~laSgS~D~tvr~vWD~~tG-~~~~~lk~gH~~~V~sVAfSp-dG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sg 427 (630)
.++.|..++.|- +=.+... ..-+....+|.+..+++||.+ |-..||.|-+. |
T Consensus 72 IlavG~atG~I~-l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldk--------h----------------- 125 (783)
T KOG1008|consen 72 ILAVGSATGNIS-LLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDK--------H----------------- 125 (783)
T ss_pred hhhhccccCceE-EeecCCcccccceecccccccccccccccccHHHHHhhhhh--------h-----------------
Confidence 477777777766 3333221 122333347777788888877 44455544111 1
Q ss_pred cCCcEEEEEeCCCCcccceeeeeEecc-cCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccce
Q 006825 428 QERVRVRQYGKSCKDLTALYKCQEIQA-HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNML 506 (630)
Q Consensus 428 s~Dg~VriWd~~~~el~~~~~v~tL~g-Ht~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V 506 (630)
-.|..+.|||..++- +..+....|.+ -.....+++|-.+.++|.+|..-+.++++|++....... .-.+..+
T Consensus 126 rnds~~~Iwdi~s~l-tvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~------svnTk~v 198 (783)
T KOG1008|consen 126 RNDSSLKIWDINSLL-TVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVS------SVNTKYV 198 (783)
T ss_pred cccCCccceeccccc-CCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhh------hhhhhhc
Confidence 124558999987651 11111111222 333455888889999999999999999999974322111 1112344
Q ss_pred EEEEECC-CCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCC----CCEEEEEEcCC--C
Q 006825 507 LLANGSP-EPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHL----DDVLDLSWSKS--Q 579 (630)
Q Consensus 507 ~svafSp-dg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs----~~V~sLafSPd--~ 579 (630)
..+...| .+.++++- .|+.|.+|+..+. -..++..+.... ..+..++|.|. +
T Consensus 199 qG~tVdp~~~nY~cs~-~dg~iAiwD~~rn--------------------ienpl~~i~~~~N~~~~~l~~~aycPtrtg 257 (783)
T KOG1008|consen 199 QGITVDPFSPNYFCSN-SDGDIAIWDTYRN--------------------IENPLQIILRNENKKPKQLFALAYCPTRTG 257 (783)
T ss_pred ccceecCCCCCceecc-ccCceeeccchhh--------------------hccHHHHHhhCCCCcccceeeEEeccCCcc
Confidence 5566667 56666555 5888844442110 123333332222 24899999997 8
Q ss_pred eEEEEECC-CcEEEEeCC
Q 006825 580 HLLSSSMD-KTVRLWHLS 596 (630)
Q Consensus 580 ~LaSgS~D-gtVrIWDl~ 596 (630)
+|++...| ++|+++|+.
T Consensus 258 lla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 258 LLAVLSRDSITIRLYDIC 275 (783)
T ss_pred hhhhhccCcceEEEeccc
Confidence 88888876 799999985
No 323
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.01 E-value=0.26 Score=56.85 Aligned_cols=133 Identities=15% Similarity=0.017 Sum_probs=73.0
Q ss_pred CCccEecccCCC----C-ceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCc
Q 006825 357 DSFDLNNNGSSG----G-GMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERV 431 (630)
Q Consensus 357 D~tvr~vWD~~t----G-~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg 431 (630)
+++|. +.|..+ + +.+..+. =-++.-.|+++|||+++... +..+.
T Consensus 295 gn~V~-VID~~t~~~~~~~v~~yIP--VGKsPHGV~vSPDGkylyVa----------------------------nklS~ 343 (635)
T PRK02888 295 GSKVP-VVDGRKAANAGSALTRYVP--VPKNPHGVNTSPDGKYFIAN----------------------------GKLSP 343 (635)
T ss_pred CCEEE-EEECCccccCCcceEEEEE--CCCCccceEECCCCCEEEEe----------------------------CCCCC
Confidence 46677 888887 4 2333222 22344559999999988643 33344
Q ss_pred EEEEEeCCCCcc------cc-eeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCC----------ceeeee
Q 006825 432 RVRQYGKSCKDL------TA-LYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVES----------ERKGEL 494 (630)
Q Consensus 432 ~VriWd~~~~el------~~-~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg----------~~~~~l 494 (630)
+|-+.|+...+- .. -..+.+..--.++ .-.+|.++|+...|---|..|-.||+.+. ..+..+
T Consensus 344 tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP-LHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~ 422 (635)
T PRK02888 344 TVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP-LHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKL 422 (635)
T ss_pred cEEEEEChhhhhhhhccCCccceEEEeeccCCCc-ceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecc
Confidence 455555433210 00 0011222222222 34678999998888899999999999762 222222
Q ss_pred ecccccCcccceEEEEECCCCCEEEEe
Q 006825 495 LEKQEDGHLNMLLLANGSPEPTSLSPK 521 (630)
Q Consensus 495 ~~~~~~gh~~~V~svafSpdg~~lasg 521 (630)
......+|......=.-.|+|++|++.
T Consensus 423 dV~y~pgh~~~~~g~t~~~dgk~l~~~ 449 (635)
T PRK02888 423 DVHYQPGHNHASMGETKEADGKWLVSL 449 (635)
T ss_pred cCCCccceeeecCCCcCCCCCCEEEEc
Confidence 222223443332233346788888875
No 324
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.92 E-value=0.7 Score=56.18 Aligned_cols=109 Identities=17% Similarity=0.243 Sum_probs=66.6
Q ss_pred EEEEEccCCCEEEEEe----CC-CcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeC---CCeeeeec
Q 006825 460 WSIKFSLDGRYLASAG----ED-CVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHL---DNHLEKKR 531 (630)
Q Consensus 460 ~sVaFSpDG~~LASgS----~D-gtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~---Dg~I~i~~ 531 (630)
..|.|--||+++|+.. .+ ++|+|||-+ |..-.. .....+.-.+++|-|.|..+++-.. |..|
T Consensus 199 ~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~-----se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~I---- 268 (1265)
T KOG1920|consen 199 TSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNST-----SEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDI---- 268 (1265)
T ss_pred ceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcc-----cCcccccccceeecCCCCeEeeeeecCCCCcE----
Confidence 3688999999999832 34 899999986 432222 1222233457999999999887532 2233
Q ss_pred ccccccccccccCccccccEEEeCCCCceEEe----ccCCCCEEEEEEcCC-CeEEE---EECCCcEEEEeCCC
Q 006825 532 RGRSINRKSLSLDHMVVPETVFALSDKPICSF----QGHLDDVLDLSWSKS-QHLLS---SSMDKTVRLWHLSS 597 (630)
Q Consensus 532 ~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL----~GHs~~V~sLafSPd-~~LaS---gS~DgtVrIWDl~t 597 (630)
.+|.-.|-....| .--..+|..|+|+-+ ..|+. ......|++|-+.+
T Consensus 269 -------------------vffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 269 -------------------VFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred -------------------EEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecC
Confidence 3444444332222 222334788999887 66664 33344488887765
No 325
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.82 E-value=0.9 Score=53.53 Aligned_cols=201 Identities=8% Similarity=0.010 Sum_probs=121.2
Q ss_pred ceEeecCCCccEecccCCCCcee-EEecCCccCCEEEEEEcCCC-CeEEeecCCCCCccccCCcceEEEeecCCCeEEEe
Q 006825 350 NVEEGNKDSFDLNNNGSSGGGMK-SKKKGSWFKSIRTVASSVTG-HKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHG 427 (630)
Q Consensus 350 ~laSgS~D~tvr~vWD~~tG~~~-~~lk~gH~~~V~sVAfSpdG-~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sg 427 (630)
.+|-|++|+.|- -+..+... +-++ .|...|...-+.-++ .+|++-..|..
T Consensus 37 ~vvigt~~G~V~---~Ln~s~~~~~~fq-a~~~siv~~L~~~~~~~~L~sv~Ed~~------------------------ 88 (933)
T KOG2114|consen 37 SVVIGTADGRVV---ILNSSFQLIRGFQ-AYEQSIVQFLYILNKQNFLFSVGEDEQ------------------------ 88 (933)
T ss_pred eEEEeeccccEE---Eecccceeeehhe-ecchhhhhHhhcccCceEEEEEeecCC------------------------
Confidence 567788888754 44444444 6666 555553222222232 34554433320
Q ss_pred cCCcEEEEEeCCCCcccc-eeee--eEecc-----cCcCEEEEEEccCCCEEEEEeCCCcEEEEEC--cCCceeeeeecc
Q 006825 428 QERVRVRQYGKSCKDLTA-LYKC--QEIQA-----HNGSIWSIKFSLDGRYLASAGEDCVIHVWQV--VESERKGELLEK 497 (630)
Q Consensus 428 s~Dg~VriWd~~~~el~~-~~~v--~tL~g-----Ht~~V~sVaFSpDG~~LASgS~DgtIrVWDl--~tg~~~~~l~~~ 497 (630)
+.-..|++|+..-.+... ..++ +.+.. ...++.+++.+.+=+.+|.|=.+|.|..+.- ....-.+.-
T Consensus 89 ~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~--- 165 (933)
T KOG2114|consen 89 GNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQD--- 165 (933)
T ss_pred CCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcccccee---
Confidence 011268999876442222 2233 22223 2457899999999999999999999998842 111111111
Q ss_pred cccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCc--eEEeccCCCCEEEEEE
Q 006825 498 QEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKP--ICSFQGHLDDVLDLSW 575 (630)
Q Consensus 498 ~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~--l~tL~GHs~~V~sLaf 575 (630)
....-..+|+.+++..+++.++.......| .+|.++|+. ++.+..|...+.|.+|
T Consensus 166 ~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V-----------------------~~y~l~gr~p~~~~ld~~G~~lnCss~ 222 (933)
T KOG2114|consen 166 YSHRGKEPITGLALRSDGKSVLFVATTEQV-----------------------MLYSLSGRTPSLKVLDNNGISLNCSSF 222 (933)
T ss_pred eeccCCCCceeeEEecCCceeEEEEeccee-----------------------EEEEecCCCcceeeeccCCccceeeec
Confidence 012334689999998888774444455555 677776665 6668888899999999
Q ss_pred cCC-CeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825 576 SKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS 605 (630)
Q Consensus 576 SPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~ 605 (630)
++. ..|+.++ +..|.+|+......-.+|.
T Consensus 223 ~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 223 SDGTYQFICAG-SEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred CCCCccEEEec-CceEEEEcCCCcceeeeec
Confidence 987 5344444 3468999988655555554
No 326
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=95.81 E-value=1.6 Score=47.81 Aligned_cols=133 Identities=11% Similarity=-0.022 Sum_probs=75.4
Q ss_pred EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcc
Q 006825 424 SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHL 503 (630)
Q Consensus 424 l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~ 503 (630)
++.++.++.+..+|..+++.. ... .......+. ..+..|+.++.|+.|..+|..+|+.+..... ..+
T Consensus 259 vy~~~~~g~l~ald~~tG~~~-----W~~--~~~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~---~~~- 325 (394)
T PRK11138 259 VYALAYNGNLVALDLRSGQIV-----WKR--EYGSVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSD---LLH- 325 (394)
T ss_pred EEEEEcCCeEEEEECCCCCEE-----Eee--cCCCccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccc---cCC-
Confidence 566667888888888777521 111 111111222 2466677788999999999999876543210 011
Q ss_pred cceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEE-EEEcCCCeE
Q 006825 504 NMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLD-LSWSKSQHL 581 (630)
Q Consensus 504 ~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~s-LafSPd~~L 581 (630)
........ .+.+++.+..++.+ .+.+. +|+.+..+.-+...+.. ..+ .++.|
T Consensus 326 ~~~~sp~v--~~g~l~v~~~~G~l-----------------------~~ld~~tG~~~~~~~~~~~~~~s~P~~-~~~~l 379 (394)
T PRK11138 326 RLLTAPVL--YNGYLVVGDSEGYL-----------------------HWINREDGRFVAQQKVDSSGFLSEPVV-ADDKL 379 (394)
T ss_pred CcccCCEE--ECCEEEEEeCCCEE-----------------------EEEECCCCCEEEEEEcCCCcceeCCEE-ECCEE
Confidence 01111111 13455667778877 45555 66666665433222322 122 23788
Q ss_pred EEEECCCcEEEEeC
Q 006825 582 LSSSMDKTVRLWHL 595 (630)
Q Consensus 582 aSgS~DgtVrIWDl 595 (630)
+.++.||.|..++.
T Consensus 380 ~v~t~~G~l~~~~~ 393 (394)
T PRK11138 380 LIQARDGTVYAITR 393 (394)
T ss_pred EEEeCCceEEEEeC
Confidence 88999999988764
No 327
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=95.49 E-value=0.54 Score=42.64 Aligned_cols=99 Identities=13% Similarity=0.160 Sum_probs=66.4
Q ss_pred EEEEEEcc---CC-CEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccc
Q 006825 459 IWSIKFSL---DG-RYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGR 534 (630)
Q Consensus 459 V~sVaFSp---DG-~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~ 534 (630)
|.+|++.. || +.|+.|++|..||||+-. +.+.++ .-...|..+.-... ..++.+..+|+|-+++...
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei------~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~ 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEI------TETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEE------ecccceEEEEEcCC-CEEEEEecCCEEEEEeCcc
Confidence 56777665 33 479999999999999854 444443 22345666666555 5688889999997776544
Q ss_pred cccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcC---C--CeEEEEECCCcEE
Q 006825 535 SINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSK---S--QHLLSSSMDKTVR 591 (630)
Q Consensus 535 ~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSP---d--~~LaSgS~DgtVr 591 (630)
++|.+..+ ..++++++.. + .-|++|-.+|.|-
T Consensus 73 ----------------RlWRiKSK---------~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 73 ----------------RLWRIKSK---------NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ----------------eeeeeccC---------CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 77776422 1255665543 2 4788998888764
No 328
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.35 E-value=1.1 Score=52.20 Aligned_cols=188 Identities=12% Similarity=0.053 Sum_probs=96.5
Q ss_pred ccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcC
Q 006825 379 WFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGS 458 (630)
Q Consensus 379 H~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~ 458 (630)
....+.+.++||+|+.++.... ..+.. ......|++++... +. ...+.+. .
T Consensus 348 ~~~~vsspaiSpdG~~vA~v~~---------------~~~~~------~d~~s~Lwv~~~gg-~~-----~~lt~g~--~ 398 (591)
T PRK13616 348 QMGNITSAALSRSGRQVAAVVT---------------LGRGA------PDPASSLWVGPLGG-VA-----VQVLEGH--S 398 (591)
T ss_pred cccCcccceECCCCCEEEEEEe---------------ecCCC------CCcceEEEEEeCCC-cc-----eeeecCC--C
Confidence 3446778999999987763210 00000 01233566666422 11 1123333 3
Q ss_pred EEEEEEccCCCEEEEEeCC-CcEEEEECcCCceeeeeecc--ccc-CcccceEEEEECCCCCEEEEeeCCCeeeeecccc
Q 006825 459 IWSIKFSLDGRYLASAGED-CVIHVWQVVESERKGELLEK--QED-GHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGR 534 (630)
Q Consensus 459 V~sVaFSpDG~~LASgS~D-gtIrVWDl~tg~~~~~l~~~--~~~-gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~ 534 (630)
.+.-.|+|||+.|++.... ..+++.+-.....+..+... ... .....|..+.|+|||..++... ++.|.+-
T Consensus 399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va---- 473 (591)
T PRK13616 399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLA---- 473 (591)
T ss_pred CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEE----
Confidence 7888999999988887643 23334333221122111100 000 2235699999999999988765 3555221
Q ss_pred cccccccccCccccccEEEeC-CCC-----ceEEeccCCCCEEEEEEcCCCeEEEEECCCcEEEEeCCC-CcEEEEEe--
Q 006825 535 SINRKSLSLDHMVVPETVFAL-SDK-----PICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSS-KTCLKIFS-- 605 (630)
Q Consensus 535 ~~~~~s~s~d~~i~~~~Vwdl-sgk-----~l~tL~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~t-g~~l~t~~-- 605 (630)
.|-.. .|+ ++....+-...+.++.|.++..|+.+..++...+|.+.- |.....+.
T Consensus 474 ----------------~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~ 537 (591)
T PRK13616 474 ----------------VVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSR 537 (591)
T ss_pred ----------------EEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCccccccCCC
Confidence 11111 221 111112233446889999995455665555555666542 32222223
Q ss_pred -cCCceEEEE-cC
Q 006825 606 -HSDYDISLV-DR 616 (630)
Q Consensus 606 -H~~~V~sVa-s~ 616 (630)
....|..|+ .+
T Consensus 538 n~~~~v~~vaa~~ 550 (591)
T PRK13616 538 NLSAPVVAVAASP 550 (591)
T ss_pred CccCceEEEecCC
Confidence 366777788 44
No 329
>PRK02888 nitrous-oxide reductase; Validated
Probab=95.16 E-value=2.1 Score=49.60 Aligned_cols=141 Identities=9% Similarity=-0.003 Sum_probs=79.2
Q ss_pred cCCCEEEEEeCCCcEEEEECcC----C-ceeeeeecccccCcccceEEEEECCCCCEEEEee-CCCeeeeeccccccccc
Q 006825 466 LDGRYLASAGEDCVIHVWQVVE----S-ERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKH-LDNHLEKKRRGRSINRK 539 (630)
Q Consensus 466 pDG~~LASgS~DgtIrVWDl~t----g-~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs-~Dg~I~i~~~~~~~~~~ 539 (630)
++|++... .+++|.+.|..+ + ..+..+. .......++++|||++++.++ .+.++-+.+..+.....
T Consensus 286 kdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP------VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~ 357 (635)
T PRK02888 286 KAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP------VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLF 357 (635)
T ss_pred hCCCEEEE--CCCEEEEEECCccccCCcceEEEEE------CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhh
Confidence 36665554 357899999887 2 3333332 224456799999999887764 35566433332211100
Q ss_pred ccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCC----------CcEEEEEe-cC
Q 006825 540 SLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSS----------KTCLKIFS-HS 607 (630)
Q Consensus 540 s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~t----------g~~l~t~~-H~ 607 (630)
+..+ +.....+.+.+- ...-...+|.++ ..+.|-..|..|-.||+.+ ...+..+. |-
T Consensus 358 ----~~~~------~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y 426 (635)
T PRK02888 358 ----DGKI------KPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHY 426 (635)
T ss_pred ----hccC------CccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCC
Confidence 0000 011112222221 112256788888 7777888899999999986 33445454 44
Q ss_pred CceEEEE------cCCCcEEEEec
Q 006825 608 DYDISLV------DRLMLRFAYGA 625 (630)
Q Consensus 608 ~~V~sVa------s~~~~~lAsgs 625 (630)
..-.-.+ .+++.++.+..
T Consensus 427 ~pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 427 QPGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred ccceeeecCCCcCCCCCCEEEEcc
Confidence 4433333 77888887764
No 330
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=95.11 E-value=0.21 Score=56.05 Aligned_cols=121 Identities=13% Similarity=0.137 Sum_probs=82.7
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccc
Q 006825 459 IWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINR 538 (630)
Q Consensus 459 V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~ 538 (630)
=+-+.|||-|.||+|--.-| |.+|--..-..++.+ .| ..|..+.|||..+||++=+..-.+.-|....
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF------~H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e---- 280 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRF------YH-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNE---- 280 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhc------cC-CCceeeecCCccceEEEecCCccccCcccCC----
Confidence 45689999999999988765 889976665555553 33 4577899999999999876544432222111
Q ss_pred cccccCccccccEEEeC-CCCceEEeccCCC--CE-EEEEEcCC-CeEEEEECCCcEEEEeCCCCcE
Q 006825 539 KSLSLDHMVVPETVFAL-SDKPICSFQGHLD--DV-LDLSWSKS-QHLLSSSMDKTVRLWHLSSKTC 600 (630)
Q Consensus 539 ~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~--~V-~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~ 600 (630)
-....|||+ +|...+.|..-.. .+ .-..||.| +|+|--.. .+|.|++..+-.+
T Consensus 281 --------~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~l 338 (698)
T KOG2314|consen 281 --------GQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFML 338 (698)
T ss_pred --------CceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceee
Confidence 011179999 8888888765322 22 33678998 88886665 5689998876433
No 331
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.03 E-value=0.092 Score=59.60 Aligned_cols=88 Identities=16% Similarity=0.131 Sum_probs=66.2
Q ss_pred cceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEE-EEEEcCC-CeE
Q 006825 504 NMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVL-DLSWSKS-QHL 581 (630)
Q Consensus 504 ~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~-sLafSPd-~~L 581 (630)
..+..+.|+|.-.+||.+..+|.+-+...+ ++++|.+ .-|...|+ +++|.|| ++|
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n---------------~qRlwti--------p~p~~~v~~sL~W~~DGkll 77 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN---------------WQRLWTI--------PIPGENVTASLCWRPDGKLL 77 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec---------------cceeEec--------cCCCCccceeeeecCCCCEE
Confidence 457789999999999999999977433322 1255554 44555565 9999999 999
Q ss_pred EEEECCCcEEEEeCCCCcEEEEE--ecCCceEEEE
Q 006825 582 LSSSMDKTVRLWHLSSKTCLKIF--SHSDYDISLV 614 (630)
Q Consensus 582 aSgS~DgtVrIWDl~tg~~l~t~--~H~~~V~sVa 614 (630)
|.|-.||+|+|-|+.++..+..+ .-...|.++.
T Consensus 78 aVg~kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~ 112 (665)
T KOG4640|consen 78 AVGFKDGTIRLHDVEKGGRLVSFLFSVETDISKGI 112 (665)
T ss_pred EEEecCCeEEEEEccCCCceeccccccccchheee
Confidence 99999999999999999988873 3445555544
No 332
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.69 E-value=0.12 Score=59.47 Aligned_cols=112 Identities=11% Similarity=0.056 Sum_probs=82.3
Q ss_pred EeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeee
Q 006825 416 ATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELL 495 (630)
Q Consensus 416 a~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~ 495 (630)
|++-+...++-|+..|.+.+|.-.+++. ..+...+-++.+..+..|++..++|.|+..|.|.|+.+..+......+
T Consensus 40 c~dst~~~l~~GsS~G~lyl~~R~~~~~----~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~ 115 (726)
T KOG3621|consen 40 CVDATEEYLAMGSSAGSVYLYNRHTGEM----RKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDY 115 (726)
T ss_pred EeecCCceEEEecccceEEEEecCchhh----hcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCccee
Confidence 3333444467778888999998877654 233344566778888999999999999999999999988754333322
Q ss_pred -cccccCcccceEEEEECCCCCEEEEeeCCCeeeeec
Q 006825 496 -EKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKR 531 (630)
Q Consensus 496 -~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~ 531 (630)
......|...|++++|+++++.+.+|-..|+|....
T Consensus 116 ~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~ 152 (726)
T KOG3621|consen 116 VTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTE 152 (726)
T ss_pred eccccccCCceEEEEEecccccEEeecCCCceEEEEE
Confidence 222344788999999999999999998888775443
No 333
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=94.57 E-value=1.5 Score=48.98 Aligned_cols=177 Identities=16% Similarity=0.096 Sum_probs=97.9
Q ss_pred CceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceee
Q 006825 369 GGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYK 448 (630)
Q Consensus 369 G~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~ 448 (630)
|.-.+.+. .-...+..-+|+|+|+.++--+ +.......+.+++..+++.. .
T Consensus 182 g~~~~~l~-~~~~~~~~p~ws~~~~~~~y~~-------------------------f~~~~~~~i~~~~l~~g~~~---~ 232 (425)
T COG0823 182 GYNQQKLT-DSGSLILTPAWSPDGKKLAYVS-------------------------FELGGCPRIYYLDLNTGKRP---V 232 (425)
T ss_pred CcceeEec-ccCcceeccccCcCCCceEEEE-------------------------EecCCCceEEEEeccCCccc---e
Confidence 55555555 4555667778888887765321 11111146888888776532 2
Q ss_pred eeEecccCcCEEEEEEccCCCEEEE-EeCCCcEEE--EECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCC
Q 006825 449 CQEIQAHNGSIWSIKFSLDGRYLAS-AGEDCVIHV--WQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN 525 (630)
Q Consensus 449 v~tL~gHt~~V~sVaFSpDG~~LAS-gS~DgtIrV--WDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg 525 (630)
+..+.+|. ..-+|+|||++|+- ...|+...| .|+..+... .| ..-.+.-..-.|+|||+.|+..+..+
T Consensus 233 i~~~~g~~---~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~-~L-----t~~~gi~~~Ps~spdG~~ivf~Sdr~ 303 (425)
T COG0823 233 ILNFNGNN---GAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLP-RL-----TNGFGINTSPSWSPDGSKIVFTSDRG 303 (425)
T ss_pred eeccCCcc---CCccCCCCCCEEEEEECCCCCccEEEEcCCCCcce-ec-----ccCCccccCccCCCCCCEEEEEeCCC
Confidence 33345554 46789999987655 456776555 566655522 22 22222223667899999998875443
Q ss_pred -eeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEEC-CCc--EEEEeCCCCcE
Q 006825 526 -HLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSM-DKT--VRLWHLSSKTC 600 (630)
Q Consensus 526 -~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~-Dgt--VrIWDl~tg~~ 600 (630)
.-.+ .+.+..+.....+.-....-..-.|+|| .+|+..+. +|. |-+.|+.++.-
T Consensus 304 G~p~I---------------------~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~ 362 (425)
T COG0823 304 GRPQI---------------------YLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK 362 (425)
T ss_pred CCcce---------------------EEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCc
Confidence 2211 2233344433333322222226778999 77765553 344 56666655543
Q ss_pred EEEE
Q 006825 601 LKIF 604 (630)
Q Consensus 601 l~t~ 604 (630)
++.+
T Consensus 363 ~~~l 366 (425)
T COG0823 363 IRIL 366 (425)
T ss_pred EEEc
Confidence 4443
No 334
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.43 E-value=1.4 Score=49.64 Aligned_cols=146 Identities=10% Similarity=0.020 Sum_probs=99.3
Q ss_pred ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecC
Q 006825 350 NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQE 429 (630)
Q Consensus 350 ~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~ 429 (630)
.+.++..-..+. -=|+++|+.+...+ -|.. |.-+-+.|+++.- ...+...+.|-.
T Consensus 348 il~~~~~~~~l~-klDIE~GKIVeEWk-~~~d-i~mv~~t~d~K~~----------------------Ql~~e~TlvGLs 402 (644)
T KOG2395|consen 348 ILMDGGEQDKLY-KLDIERGKIVEEWK-FEDD-INMVDITPDFKFA----------------------QLTSEQTLVGLS 402 (644)
T ss_pred EeeCCCCcCcce-eeecccceeeeEee-ccCC-cceeeccCCcchh----------------------cccccccEEeec
Confidence 466676666666 66899999999888 4555 7778888876521 112233466777
Q ss_pred CcEEEEEeCCCCcccceeeeeEecccC----cCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccc
Q 006825 430 RVRVRQYGKSCKDLTALYKCQEIQAHN----GSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNM 505 (630)
Q Consensus 430 Dg~VriWd~~~~el~~~~~v~tL~gHt----~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~ 505 (630)
+..|..||.+..... .+..-++|. ....|.+-..+| ++|.||.+|.|||||- .+.+.++. +.+-..+
T Consensus 403 ~n~vfriDpRv~~~~---kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTA----lPgLG~~ 473 (644)
T KOG2395|consen 403 DNSVFRIDPRVQGKN---KLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTA----LPGLGDA 473 (644)
T ss_pred CCceEEecccccCcc---eeeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhc----ccccCCc
Confidence 888999987643321 122233443 234555555555 6889999999999997 56665554 4777789
Q ss_pred eEEEEECCCCCEEEEeeCCCeeee
Q 006825 506 LLLANGSPEPTSLSPKHLDNHLEK 529 (630)
Q Consensus 506 V~svafSpdg~~lasgs~Dg~I~i 529 (630)
|..|..+.+|++|++.+..-.+.+
T Consensus 474 I~hVdvtadGKwil~Tc~tyLlLi 497 (644)
T KOG2395|consen 474 IKHVDVTADGKWILATCKTYLLLI 497 (644)
T ss_pred eeeEEeeccCcEEEEecccEEEEE
Confidence 999999999999888755544433
No 335
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=94.21 E-value=0.016 Score=65.52 Aligned_cols=143 Identities=13% Similarity=0.095 Sum_probs=94.2
Q ss_pred EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc-CCCEEEEEe----CCCcEEEEECcCCce--eeeeec
Q 006825 424 SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASAG----EDCVIHVWQVVESER--KGELLE 496 (630)
Q Consensus 424 l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp-DG~~LASgS----~DgtIrVWDl~tg~~--~~~l~~ 496 (630)
++.|..+|.|-+-....+... ......+|....++++|++ |..+||.|- .|-.++|||+.++-. .....
T Consensus 73 lavG~atG~I~l~s~r~~hdS---s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~- 148 (783)
T KOG1008|consen 73 LAVGSATGNISLLSVRHPHDS---SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPL- 148 (783)
T ss_pred hhhccccCceEEeecCCcccc---cceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccc-
Confidence 677778888888776554332 1234578999999999999 777888762 456799999987622 11110
Q ss_pred ccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEc
Q 006825 497 KQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWS 576 (630)
Q Consensus 497 ~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafS 576 (630)
-..+......+++|-.+.+++.+|.....+ .++++...+.....-.+..|..+...
T Consensus 149 -fs~~~l~gqns~cwlrd~klvlaGm~sr~~-----------------------~ifdlRqs~~~~~svnTk~vqG~tVd 204 (783)
T KOG1008|consen 149 -FSSSTLDGQNSVCWLRDTKLVLAGMTSRSV-----------------------HIFDLRQSLDSVSSVNTKYVQGITVD 204 (783)
T ss_pred -cccccccCccccccccCcchhhcccccchh-----------------------hhhhhhhhhhhhhhhhhhhcccceec
Confidence 011233445578888888888888877777 55555333322222234456667777
Q ss_pred C-C-CeEEEEECCCcEEEEeC
Q 006825 577 K-S-QHLLSSSMDKTVRLWHL 595 (630)
Q Consensus 577 P-d-~~LaSgS~DgtVrIWDl 595 (630)
| . +|+++-. |+.|-|||.
T Consensus 205 p~~~nY~cs~~-dg~iAiwD~ 224 (783)
T KOG1008|consen 205 PFSPNYFCSNS-DGDIAIWDT 224 (783)
T ss_pred CCCCCceeccc-cCceeeccc
Confidence 7 4 7888777 999999993
No 336
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.11 E-value=0.21 Score=56.80 Aligned_cols=64 Identities=17% Similarity=0.119 Sum_probs=50.8
Q ss_pred EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEE-EEEEccCCCEEEEEeCCCcEEEEECcCCceeee
Q 006825 424 SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIW-SIKFSLDGRYLASAGEDCVIHVWQVVESERKGE 493 (630)
Q Consensus 424 l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~-sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~ 493 (630)
+|.+..+|.|.+...... .+.++.-|...|+ +++|.|||++||.|=.||+|++-|++++..+..
T Consensus 35 iA~~t~~gelli~R~n~q------Rlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 35 IATRTEKGELLIHRLNWQ------RLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred hheeccCCcEEEEEeccc------eeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 666777777777665422 3556665666676 999999999999999999999999999987766
No 337
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=93.96 E-value=1.1 Score=53.19 Aligned_cols=135 Identities=12% Similarity=0.041 Sum_probs=91.8
Q ss_pred EEeec--ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC--------------CCc---
Q 006825 345 LMRRQ--NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER--------------DTS--- 405 (630)
Q Consensus 345 Lafs~--~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~--------------dt~--- 405 (630)
+|+.. ++..|..-++|. +-|..+-+.++++. .|.+.| .+|...|++|++.+.-. |..
T Consensus 182 imR~Nnr~lf~G~t~G~V~-LrD~~s~~~iht~~-aHs~si--SDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmr 257 (1118)
T KOG1275|consen 182 IMRYNNRNLFCGDTRGTVF-LRDPNSFETIHTFD-AHSGSI--SDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMR 257 (1118)
T ss_pred EEEecCcEEEeecccceEE-eecCCcCceeeeee-ccccce--eeeeccCCeEEEeecccccccccccchhhhhhhhhhh
Confidence 45544 788999999999 99999999999999 999999 68999999999976543 100
Q ss_pred -----cccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcE
Q 006825 406 -----SEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVI 480 (630)
Q Consensus 406 -----s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtI 480 (630)
...-....+....--...++..+..|...+-|..+-.... .-++.+.--...|.++++++.|+.||-|-.+|.|
T Consensus 258 al~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~-~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v 336 (1118)
T KOG1275|consen 258 ALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPP-AGVKMVNPNGSGISAFDISSNGDALAFGDHEGHV 336 (1118)
T ss_pred ccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCc-cceeEEccCCCcceeEEecCCCceEEEecccCcE
Confidence 0111112222222222336777777888877732211100 0112223334459999999999999999999999
Q ss_pred EEEE
Q 006825 481 HVWQ 484 (630)
Q Consensus 481 rVWD 484 (630)
.+|-
T Consensus 337 ~~wa 340 (1118)
T KOG1275|consen 337 NLWA 340 (1118)
T ss_pred eeec
Confidence 9997
No 338
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.92 E-value=0.2 Score=57.66 Aligned_cols=122 Identities=16% Similarity=0.155 Sum_probs=85.9
Q ss_pred cCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccc
Q 006825 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGR 534 (630)
Q Consensus 455 Ht~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~ 534 (630)
|...|.--+++..+++|+-|+.-|.+.+++-..++....- ..+....+..+..+++..++|.|+..+.|.+.....
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~----~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~ 107 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLK----NEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNK 107 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhccc----ccCccceEEEEEecchhHhhhhhcCCceEEeehhhc
Confidence 4455666667778999999999999999998766543321 234455666778898999999998889884433322
Q ss_pred cccccccccCccccccEEEeCCCCceEEe-ccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCC
Q 006825 535 SINRKSLSLDHMVVPETVFALSDKPICSF-QGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSS 597 (630)
Q Consensus 535 ~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL-~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~t 597 (630)
... .+ . ..+..+ +.|...|++++|+++ ..|.+|-.-|+|.+-.+.+
T Consensus 108 ~~p-----~~------~------~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 108 ELP-----RD------L------DYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cCC-----Cc------c------eeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 000 00 0 001111 237889999999999 9999999999999988877
No 339
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.92 E-value=3.2 Score=43.66 Aligned_cols=191 Identities=10% Similarity=0.048 Sum_probs=106.4
Q ss_pred cccCCCCceeEEecC---CccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCC
Q 006825 363 NNGSSGGGMKSKKKG---SWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKS 439 (630)
Q Consensus 363 vWD~~tG~~~~~lk~---gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~ 439 (630)
+.|..++++..++.. .|.-. -=.|||||.+|...-.|- -...|.|-+||..
T Consensus 95 vfD~~~~~~pv~~~s~~~RHfyG--HGvfs~dG~~LYATEndf------------------------d~~rGViGvYd~r 148 (366)
T COG3490 95 VFDPNGAQEPVTLVSQEGRHFYG--HGVFSPDGRLLYATENDF------------------------DPNRGVIGVYDAR 148 (366)
T ss_pred EECCCCCcCcEEEecccCceeec--ccccCCCCcEEEeecCCC------------------------CCCCceEEEEecc
Confidence 777777776655531 12211 137999999886543331 1346678899886
Q ss_pred CCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEE--------------------EECcCCceeeeeecccc
Q 006825 440 CKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHV--------------------WQVVESERKGELLEKQE 499 (630)
Q Consensus 440 ~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrV--------------------WDl~tg~~~~~l~~~~~ 499 (630)
.+ +..+.++..|--.--.|.+.+||+.|+.+. |-|.. -|..+|+.+.+.. .+.
T Consensus 149 ~~----fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNldsMePSlvlld~atG~liekh~-Lp~ 221 (366)
T COG3490 149 EG----FQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHT-LPA 221 (366)
T ss_pred cc----cceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccchhhcCccEEEEeccccchhhhcc-Cch
Confidence 33 345667777776677899999999988764 32333 3333333332211 011
Q ss_pred cCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEec-------cCCCCEE
Q 006825 500 DGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQ-------GHLDDVL 571 (630)
Q Consensus 500 ~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~-------GHs~~V~ 571 (630)
..+.-.+.-++.-+||+.++.+-.-|.- . -.|..+=.. .|+++.-+. .-...|-
T Consensus 222 ~l~~lSiRHld~g~dgtvwfgcQy~G~~------~------------d~ppLvg~~~~g~~l~~~~~pee~~~~~anYig 283 (366)
T COG3490 222 SLRQLSIRHLDIGRDGTVWFGCQYRGPR------N------------DLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIG 283 (366)
T ss_pred hhhhcceeeeeeCCCCcEEEEEEeeCCC------c------------cCCcceeeccCCCcCcccCCCHHHHHHHHhhhh
Confidence 1334456667777777665554222211 0 000011111 233333322 2335677
Q ss_pred EEEEcCC-CeEEEEE-CCCcEEEEeCCCCcEEEEE
Q 006825 572 DLSWSKS-QHLLSSS-MDKTVRLWHLSSKTCLKIF 604 (630)
Q Consensus 572 sLafSPd-~~LaSgS-~DgtVrIWDl~tg~~l~t~ 604 (630)
+|+.+.+ ++++..| .-+..-|||..+|..+..-
T Consensus 284 siA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a 318 (366)
T COG3490 284 SIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEA 318 (366)
T ss_pred heeecccCCeEEEecCCCCeEEEEEcCCCcEEecc
Confidence 8888876 6665444 5566789999999877644
No 340
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.90 E-value=0.096 Score=56.65 Aligned_cols=78 Identities=12% Similarity=-0.020 Sum_probs=62.8
Q ss_pred eeEecccCcCEEEEEEccCCC-EEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCC-CEEEEeeCCCe
Q 006825 449 CQEIQAHNGSIWSIKFSLDGR-YLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEP-TSLSPKHLDNH 526 (630)
Q Consensus 449 v~tL~gHt~~V~sVaFSpDG~-~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg-~~lasgs~Dg~ 526 (630)
.+.+.+|...|..|+|||..+ +|..++.+.+|+|.|+++...+... ..+ ..+++++|.-+. .+|..|-..|.
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy-----~a~-~~~wSC~wDlde~h~IYaGl~nG~ 259 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSY-----IAY-NQIWSCCWDLDERHVIYAGLQNGM 259 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehe-----ecc-CCceeeeeccCCcceeEEeccCce
Confidence 456788999999999999777 8889999999999999998777663 445 789999998874 55666777788
Q ss_pred eeeecc
Q 006825 527 LEKKRR 532 (630)
Q Consensus 527 I~i~~~ 532 (630)
|.+++.
T Consensus 260 VlvyD~ 265 (463)
T KOG1645|consen 260 VLVYDM 265 (463)
T ss_pred EEEEEc
Confidence 854443
No 341
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=93.50 E-value=9 Score=42.52 Aligned_cols=39 Identities=8% Similarity=0.003 Sum_probs=32.4
Q ss_pred CCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825 567 LDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS 605 (630)
Q Consensus 567 s~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~ 605 (630)
.++|..++.||+ ++||--..+|++.|....-.+++..+.
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~ 255 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFD 255 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEee
Confidence 357999999999 889988889999999877667766665
No 342
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=93.47 E-value=6.4 Score=41.71 Aligned_cols=153 Identities=9% Similarity=0.003 Sum_probs=86.1
Q ss_pred cEEEEEeCCCC-c-ccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCc-eeeeeecccccCcccceE
Q 006825 431 VRVRQYGKSCK-D-LTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE-RKGELLEKQEDGHLNMLL 507 (630)
Q Consensus 431 g~VriWd~~~~-e-l~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~-~~~~l~~~~~~gh~~~V~ 507 (630)
|.|.++++... . ...+..+.. ....++|++|+-- .|+++++. .+.|.+|++...+ ....- .......+.
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~-~~~~g~V~ai~~~-~~~lv~~~--g~~l~v~~l~~~~~l~~~~----~~~~~~~i~ 133 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHS-TEVKGPVTAICSF-NGRLVVAV--GNKLYVYDLDNSKTLLKKA----FYDSPFYIT 133 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEE-EEESS-EEEEEEE-TTEEEEEE--TTEEEEEEEETTSSEEEEE----EE-BSSSEE
T ss_pred cEEEEEEEEcccccceEEEEEEE-EeecCcceEhhhh-CCEEEEee--cCEEEEEEccCcccchhhh----eecceEEEE
Confidence 88999988763 0 012222222 3357889999876 55544444 3789999998777 33221 122223555
Q ss_pred EEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEec--cCCCCEEEEEEcCC-CeEEEE
Q 006825 508 LANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ--GHLDDVLDLSWSKS-QHLLSS 584 (630)
Q Consensus 508 svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~--GHs~~V~sLafSPd-~~LaSg 584 (630)
++... +.+++.|..-..+.+ .-|+.....+..+. .....|+++.|-++ ..++.+
T Consensus 134 sl~~~--~~~I~vgD~~~sv~~---------------------~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~ 190 (321)
T PF03178_consen 134 SLSVF--KNYILVGDAMKSVSL---------------------LRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVG 190 (321)
T ss_dssp EEEEE--TTEEEEEESSSSEEE---------------------EEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEE
T ss_pred EEecc--ccEEEEEEcccCEEE---------------------EEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEE
Confidence 55544 457777755554421 12233333233322 23456899999877 799999
Q ss_pred ECCCcEEEEeCCC-------Cc----EEEEEecCCceEEEE
Q 006825 585 SMDKTVRLWHLSS-------KT----CLKIFSHSDYDISLV 614 (630)
Q Consensus 585 S~DgtVrIWDl~t-------g~----~l~t~~H~~~V~sVa 614 (630)
-.+|.|.++.... +. .+..|...+.|+++.
T Consensus 191 D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~ 231 (321)
T PF03178_consen 191 DKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFR 231 (321)
T ss_dssp ETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEE
T ss_pred cCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEE
Confidence 9999999998762 22 233344678888884
No 343
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=92.93 E-value=4.2 Score=36.99 Aligned_cols=87 Identities=13% Similarity=0.078 Sum_probs=55.0
Q ss_pred EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcc
Q 006825 424 SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHL 503 (630)
Q Consensus 424 l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~ 503 (630)
|+.|+.|..||+|+-. + .+.++.. ++.|.+++-... ..++.+-..|||-||+-. .++... .. .
T Consensus 18 LlvGs~D~~IRvf~~~--e-----~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlWRi-----KS-K 80 (111)
T PF14783_consen 18 LLVGSDDFEIRVFKGD--E-----IVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLWRI-----KS-K 80 (111)
T ss_pred EEEecCCcEEEEEeCC--c-----EEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceeeee-----cc-C
Confidence 8999999999999753 2 3455553 456777776665 568889999999999753 222221 11 1
Q ss_pred cceEEEEE-CCC--C-CEEEEeeCCCee
Q 006825 504 NMLLLANG-SPE--P-TSLSPKHLDNHL 527 (630)
Q Consensus 504 ~~V~svaf-Spd--g-~~lasgs~Dg~I 527 (630)
..+.++.+ ..+ | .-|++|-.+|.|
T Consensus 81 ~~~~~~~~~D~~gdG~~eLI~GwsnGkv 108 (111)
T PF14783_consen 81 NQVTSMAFYDINGDGVPELIVGWSNGKV 108 (111)
T ss_pred CCeEEEEEEcCCCCCceEEEEEecCCeE
Confidence 22444333 322 2 357777777766
No 344
>PRK13616 lipoprotein LpqB; Provisional
Probab=92.70 E-value=14 Score=43.19 Aligned_cols=152 Identities=13% Similarity=0.031 Sum_probs=82.2
Q ss_pred cCccceeEEEeec---ceE-e-----ecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccc
Q 006825 337 GHSPIVQELMRRQ---NVE-E-----GNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSE 407 (630)
Q Consensus 337 GHs~~V~~Lafs~---~la-S-----gS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~ 407 (630)
|....+...+++| .+| . ...|.... ||-...+.....+..+. .+..-.|+|||+.+.+.++..
T Consensus 347 g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~-Lwv~~~gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~----- 418 (591)
T PRK13616 347 GQMGNITSAALSRSGRQVAAVVTLGRGAPDPASS-LWVGPLGGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGN----- 418 (591)
T ss_pred ccccCcccceECCCCCEEEEEEeecCCCCCcceE-EEEEeCCCcceeeecCC--CCCCceECCCCCceEEEecCc-----
Confidence 4334566777777 111 1 12344445 77554443333333243 377789999998776543221
Q ss_pred cCCcceEEEeecCCCe-EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEE---E
Q 006825 408 KGGRRSSSATDDSQDV-SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHV---W 483 (630)
Q Consensus 408 ~gh~~~Vsa~~~s~d~-l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrV---W 483 (630)
+.. +......+.+++.++..++.. + ...+.|..+.|||||+.||--. ++.|.| =
T Consensus 419 -------------~~~~v~~~~~~gql~~~~vd~ge~~-----~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vv 476 (591)
T PRK13616 419 -------------TVVRVIRDPATGQLARTPVDASAVA-----S---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVE 476 (591)
T ss_pred -------------ceEEEeccCCCceEEEEeccCchhh-----h---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEE
Confidence 111 122223456766677665431 1 3456799999999999888765 466666 2
Q ss_pred ECcCCceeeeeecc--cccCcccceEEEEECCCCCEEEE
Q 006825 484 QVVESERKGELLEK--QEDGHLNMLLLANGSPEPTSLSP 520 (630)
Q Consensus 484 Dl~tg~~~~~l~~~--~~~gh~~~V~svafSpdg~~las 520 (630)
....|. ..+... ...+-...+..+.|..++.+++.
T Consensus 477 r~~~G~--~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~ 513 (591)
T PRK13616 477 QTEDGQ--YALTNPREVGPGLGDTAVSLDWRTGDSLVVG 513 (591)
T ss_pred eCCCCc--eeecccEEeecccCCccccceEecCCEEEEE
Confidence 323343 222000 01222233567889988886543
No 345
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=92.49 E-value=17 Score=38.84 Aligned_cols=114 Identities=11% Similarity=0.028 Sum_probs=67.1
Q ss_pred eEecccCcCEEEEEEccCCCEEEEEe-CCCcEEEEECcC--CceeeeeecccccCcccceEEEEECCCCCEEEEeeCCC-
Q 006825 450 QEIQAHNGSIWSIKFSLDGRYLASAG-EDCVIHVWQVVE--SERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN- 525 (630)
Q Consensus 450 ~tL~gHt~~V~sVaFSpDG~~LASgS-~DgtIrVWDl~t--g~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg- 525 (630)
..+..|-..-+.|+||||++.|..+- .-+.|.-|++.. +.....-.........+..-.++...+|.+.+++..++
T Consensus 156 ~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~ 235 (307)
T COG3386 156 RLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGG 235 (307)
T ss_pred EeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCc
Confidence 34455556668999999998776664 447788777752 11111000000111223333455555666664443332
Q ss_pred eeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcC-C--CeEEEEEC
Q 006825 526 HLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSK-S--QHLLSSSM 586 (630)
Q Consensus 526 ~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSP-d--~~LaSgS~ 586 (630)
.| .+|+..|+++..+.-+...+++++|-- + .+++|+..
T Consensus 236 ~v-----------------------~~~~pdG~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 236 RV-----------------------VRFNPDGKLLGEIKLPVKRPTNPAFGGPDLNTLYITSAR 276 (307)
T ss_pred eE-----------------------EEECCCCcEEEEEECCCCCCccceEeCCCcCEEEEEecC
Confidence 44 778888999999988888899999964 4 44444443
No 346
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=92.41 E-value=15 Score=37.94 Aligned_cols=114 Identities=16% Similarity=0.092 Sum_probs=65.2
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEE-CcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeC---CCeeeeeccc
Q 006825 458 SIWSIKFSLDGRYLASAGEDCVIHVWQ-VVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHL---DNHLEKKRRG 533 (630)
Q Consensus 458 ~V~sVaFSpDG~~LASgS~DgtIrVWD-l~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~---Dg~I~i~~~~ 533 (630)
.+..-.|+++|.+.+....+...+++. ..++......... ..-...|..+.++|||..++.-.. ++.|.+-...
T Consensus 67 ~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~--~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~ 144 (253)
T PF10647_consen 67 SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDW--PGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVV 144 (253)
T ss_pred ccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecc--cccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEE
Confidence 677888999988777767677777774 3333332221111 111118999999999998887652 3444222111
Q ss_pred ccccccccccCccccccEEEeCCC------CceEEeccCCCCEEEEEEcCC-CeEEEE-ECCCcEEE
Q 006825 534 RSINRKSLSLDHMVVPETVFALSD------KPICSFQGHLDDVLDLSWSKS-QHLLSS-SMDKTVRL 592 (630)
Q Consensus 534 ~~~~~~s~s~d~~i~~~~Vwdlsg------k~l~tL~GHs~~V~sLafSPd-~~LaSg-S~DgtVrI 592 (630)
+ +-.+ .++.........|++++|.++ .+++.+ ..+..+..
T Consensus 145 r-------------------~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~ 192 (253)
T PF10647_consen 145 R-------------------DGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVR 192 (253)
T ss_pred e-------------------CCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCCCceeE
Confidence 1 1112 223333344568999999998 554443 34554444
No 347
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.15 E-value=2.4 Score=47.65 Aligned_cols=137 Identities=11% Similarity=0.033 Sum_probs=63.8
Q ss_pred eEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeee
Q 006825 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529 (630)
Q Consensus 450 ~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i 529 (630)
..+....-....|.++|+|++++.++ ||.-.|+........ . .+.....+|.+.+++. +--...+|.+
T Consensus 26 k~lg~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k-~---------~G~g~~~vw~~~n~yA-v~~~~~~I~I 93 (443)
T PF04053_consen 26 KELGSCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNK-A---------FGSGLSFVWSSRNRYA-VLESSSTIKI 93 (443)
T ss_dssp EEEEE-SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEE-E---------EEE-SEEEE-TSSEEE-EE-TTS-EEE
T ss_pred ccCCCCCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCccc-c---------cCceeEEEEecCccEE-EEECCCeEEE
Confidence 44445556688999999999999855 677777764322221 1 1334467788866644 4334666644
Q ss_pred ecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEecCCc
Q 006825 530 KRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDY 609 (630)
Q Consensus 530 ~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~l~t~~H~~~ 609 (630)
.. ++..+....+.-. ..+..|-. ..+|+..+ ++.|.+||..+++.++.+....
T Consensus 94 ~k----------------------n~~~~~~k~i~~~-~~~~~If~--G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~~- 146 (443)
T PF04053_consen 94 YK----------------------NFKNEVVKSIKLP-FSVEKIFG--GNLLGVKS-SDFICFYDWETGKLIRRIDVSA- 146 (443)
T ss_dssp EE----------------------TTEE-TT-----S-S-EEEEE---SSSEEEEE-TTEEEEE-TTT--EEEEESS-E-
T ss_pred EE----------------------cCccccceEEcCC-cccceEEc--CcEEEEEC-CCCEEEEEhhHcceeeEEecCC-
Confidence 21 1111111111111 11222221 23333333 3478888888888888887443
Q ss_pred eEEEE-cCCCcEEEEec
Q 006825 610 DISLV-DRLMLRFAYGA 625 (630)
Q Consensus 610 V~sVa-s~~~~~lAsgs 625 (630)
|..|. ++++..+|..+
T Consensus 147 vk~V~Ws~~g~~val~t 163 (443)
T PF04053_consen 147 VKYVIWSDDGELVALVT 163 (443)
T ss_dssp -EEEEE-TTSSEEEEE-
T ss_pred CcEEEEECCCCEEEEEe
Confidence 66666 66666655544
No 348
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=91.89 E-value=0.48 Score=48.09 Aligned_cols=104 Identities=13% Similarity=0.136 Sum_probs=61.9
Q ss_pred CCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccc
Q 006825 468 GRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMV 547 (630)
Q Consensus 468 G~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i 547 (630)
+..|+.|+.||.|.+|+........... ..+.......+....++.+..++..++.|
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~---~s~~e~i~~~Ip~~~~~~~~c~~~~dg~i-------------------- 126 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRV---CSGEESIDLGIPNGRDSSLGCVGAQDGRI-------------------- 126 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhh---hcccccceeccccccccceeEEeccCCce--------------------
Confidence 4568889999999999886221111110 11112222233334446677788889988
Q ss_pred cccEEEeC-CCCceEEeccCC-CCEEEEEEcCC-CeEEEE--ECCCcEEEEeCCC
Q 006825 548 VPETVFAL-SDKPICSFQGHL-DDVLDLSWSKS-QHLLSS--SMDKTVRLWHLSS 597 (630)
Q Consensus 548 ~~~~Vwdl-sgk~l~tL~GHs-~~V~sLafSPd-~~LaSg--S~DgtVrIWDl~t 597 (630)
+.|.+ ..+.+.....|+ .++..+..+.. .+|+.+ |.|..++.|++..
T Consensus 127 ---r~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 127 ---RACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ---eeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 45554 344454455566 45555555444 777777 8888888888764
No 349
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=91.85 E-value=5.1 Score=45.02 Aligned_cols=127 Identities=11% Similarity=-0.020 Sum_probs=60.3
Q ss_pred EEEEEEcCCCCeEEeecCCC-CCccccCC----cceEEEeecCCCe-EEEecCCcEEEEEeCCCCcccceeeeeEecccC
Q 006825 383 IRTVASSVTGHKERRSSDER-DTSSEKGG----RRSSSATDDSQDV-SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHN 456 (630)
Q Consensus 383 V~sVAfSpdG~~lasgS~D~-dt~s~~gh----~~~Vsa~~~s~d~-l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt 456 (630)
.+.+.++|+|+.++-..+.. ..-+..+. ........|...+ ++.-....+|.++.--..+. ...++- .
T Consensus 35 p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~-----~k~i~~-~ 108 (443)
T PF04053_consen 35 PQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAFGSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEV-----VKSIKL-P 108 (443)
T ss_dssp -SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEEEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-T-----T------S
T ss_pred CeeEEECCCCCEEEEEcCCEEEEEEccCCcccccCceeEEEEecCccEEEEECCCeEEEEEcCcccc-----ceEEcC-C
Confidence 56688888888777654443 11000000 1111112222222 44444466777752211110 011111 1
Q ss_pred cCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCe
Q 006825 457 GSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNH 526 (630)
Q Consensus 457 ~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~ 526 (630)
..+..|-. |.+|+..+.+ .|.+||+.+++.++.+. . ..|..|.|++++.+++..+.+..
T Consensus 109 ~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~------v-~~vk~V~Ws~~g~~val~t~~~i 167 (443)
T PF04053_consen 109 FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRID------V-SAVKYVIWSDDGELVALVTKDSI 167 (443)
T ss_dssp S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEES------S--E-EEEEE-TTSSEEEEE-S-SE
T ss_pred cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEe------c-CCCcEEEEECCCCEEEEEeCCeE
Confidence 12333332 8888887765 89999999999888751 1 23889999999999998876654
No 350
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=91.71 E-value=0.31 Score=57.09 Aligned_cols=108 Identities=14% Similarity=0.131 Sum_probs=77.3
Q ss_pred EEEEEccCCCEEEEEe----CCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccccc
Q 006825 460 WSIKFSLDGRYLASAG----EDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRS 535 (630)
Q Consensus 460 ~sVaFSpDG~~LASgS----~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~ 535 (630)
+-+.|+|...+||.++ .-|.|-|+- .+|++...+ ...-.+.+++|+|..-.++.+-.-|.+
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V------t~P~hatSLCWHpe~~vLa~gwe~g~~-------- 83 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV------TYPVHATSLCWHPEEFVLAQGWEMGVS-------- 83 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc------ccceehhhhccChHHHHHhhcccccee--------
Confidence 3357888888888876 346677773 345533221 111234579999998888888777777
Q ss_pred ccccccccCccccccEEEeCCCCceEE-eccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCC
Q 006825 536 INRKSLSLDHMVVPETVFALSDKPICS-FQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSS 597 (630)
Q Consensus 536 ~~~~s~s~d~~i~~~~Vwdlsgk~l~t-L~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~t 597 (630)
.+|....+..++ ...|..+|..|.|||+ +.|+|+-.=|.|.+|....
T Consensus 84 ---------------~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 84 ---------------DVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred ---------------EEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 666664444443 4579999999999999 9999999999999998764
No 351
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=91.58 E-value=23 Score=38.38 Aligned_cols=54 Identities=15% Similarity=0.207 Sum_probs=38.1
Q ss_pred EEEe--C-CCCceEEeccCCCCEEEEEEcCC--CeEEEEE-CCCcEEEEeCCCCcEEEEEe
Q 006825 551 TVFA--L-SDKPICSFQGHLDDVLDLSWSKS--QHLLSSS-MDKTVRLWHLSSKTCLKIFS 605 (630)
Q Consensus 551 ~Vwd--l-sgk~l~tL~GHs~~V~sLafSPd--~~LaSgS-~DgtVrIWDl~tg~~l~t~~ 605 (630)
.||. + +++.+..+.. ..++.+|+.+.+ -+|+..+ .++.|.+||..+|+.++++.
T Consensus 270 eVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 270 EVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred EEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 4554 4 6788887763 235789999987 4665554 58999999999999999887
No 352
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=91.51 E-value=0.45 Score=36.45 Aligned_cols=34 Identities=18% Similarity=0.274 Sum_probs=29.7
Q ss_pred CCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEE
Q 006825 567 LDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCL 601 (630)
Q Consensus 567 s~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l 601 (630)
...|..++|+|. .+||.+..||.|.|+.+ +++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 356999999999 99999999999999999 66554
No 353
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=91.29 E-value=0.42 Score=48.51 Aligned_cols=107 Identities=11% Similarity=0.027 Sum_probs=63.4
Q ss_pred eEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCC
Q 006825 351 VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQER 430 (630)
Q Consensus 351 laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~D 430 (630)
|...|.|++++ -.++ + .|+-.+++.-|...|..+.+++ .-++.|..+
T Consensus 33 l~~~sa~~~v~-~~~~---------~-k~k~s~rse~~~~e~~~v~~~~----------------------~~~~vG~~d 79 (238)
T KOG2444|consen 33 LRATSADGLVR-ERKV---------R-KHKESCRSERFIDEGQRVVTAS----------------------AKLMVGTSD 79 (238)
T ss_pred hccccCCcccc-cchh---------h-hhhhhhhhhhhhhcceeecccC----------------------ceEEeeccc
Confidence 34456777777 2322 2 5666677777777765444322 226888899
Q ss_pred cEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeee
Q 006825 431 VRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGE 493 (630)
Q Consensus 431 g~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~ 493 (630)
|.|.+|....-. ..+-....+-......|.--.++.+..+++.|+.||.|++.-.+.+..
T Consensus 80 g~v~~~n~n~~g---~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~ 139 (238)
T KOG2444|consen 80 GAVYVFNWNLEG---AHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGY 139 (238)
T ss_pred ceEEEecCCccc---hHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeee
Confidence 999999775110 000000111222233334444677899999999999999987665544
No 354
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=91.24 E-value=31 Score=39.14 Aligned_cols=27 Identities=15% Similarity=0.209 Sum_probs=24.8
Q ss_pred CeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825 579 QHLLSSSMDKTVRLWHLSSKTCLKIFS 605 (630)
Q Consensus 579 ~~LaSgS~DgtVrIWDl~tg~~l~t~~ 605 (630)
++|+.++.||.|+.+|..+|+.+..++
T Consensus 407 ~~v~~g~~dG~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 407 NLVFAGAADGYFRAFDATTGKELWKFR 433 (488)
T ss_pred CeEEEECCCCeEEEEECCCCceeeEEE
Confidence 788888999999999999999998887
No 355
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.09 E-value=0.4 Score=57.56 Aligned_cols=49 Identities=18% Similarity=0.352 Sum_probs=42.6
Q ss_pred CCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE
Q 006825 566 HLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV 614 (630)
Q Consensus 566 Hs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa 614 (630)
-.++|++++|+.+ .+++.|-.+|.|.+||+..+..++.+. |..+++.+-
T Consensus 129 v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi 179 (1206)
T KOG2079|consen 129 VQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVI 179 (1206)
T ss_pred cCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEE
Confidence 3468999999999 788888899999999999999999987 777777665
No 356
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=91.08 E-value=0.66 Score=35.56 Aligned_cols=34 Identities=15% Similarity=0.220 Sum_probs=30.0
Q ss_pred CcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCce
Q 006825 456 NGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESER 490 (630)
Q Consensus 456 t~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~ 490 (630)
...|.+++|+|...+||.|..||.|.|+.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 356999999999999999999999999998 5554
No 357
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.84 E-value=23 Score=37.05 Aligned_cols=68 Identities=7% Similarity=-0.109 Sum_probs=48.8
Q ss_pred CeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeee
Q 006825 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGEL 494 (630)
Q Consensus 422 d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l 494 (630)
+.++-|...+.+.+.+.++++. .+.+..-...=......+++.++.-|+.|++...-|..+..++...
T Consensus 64 dfVV~GCy~g~lYfl~~~tGs~-----~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyks 131 (354)
T KOG4649|consen 64 DFVVLGCYSGGLYFLCVKTGSQ-----IWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKS 131 (354)
T ss_pred CEEEEEEccCcEEEEEecchhh-----eeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEec
Confidence 4478889999999999988853 2222222211122334669999999999999999999988887763
No 358
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=90.83 E-value=0.35 Score=57.09 Aligned_cols=156 Identities=13% Similarity=0.155 Sum_probs=86.5
Q ss_pred EEEEEeCCC--CcccceeeeeEecccCcCEEEEEEc---cCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccce
Q 006825 432 RVRQYGKSC--KDLTALYKCQEIQAHNGSIWSIKFS---LDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNML 506 (630)
Q Consensus 432 ~VriWd~~~--~el~~~~~v~tL~gHt~~V~sVaFS---pDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V 506 (630)
.+.+|++.- +++.....++....-...+.-|.|. +..-++.-+-.+++|+|.++.+... .+ +.+|...+
T Consensus 154 ~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~l----~rsHs~~~ 227 (1283)
T KOG1916|consen 154 ELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR--SL----FRSHSQRV 227 (1283)
T ss_pred hhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH--HH----HHhcCCCc
Confidence 356676542 2222222233333333333444444 4566777777889999877765443 22 34566544
Q ss_pred EE-----------EEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-C-CCceEEeccCCCCEEEE
Q 006825 507 LL-----------ANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-S-DKPICSFQGHLDDVLDL 573 (630)
Q Consensus 507 ~s-----------vafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-s-gk~l~tL~GHs~~V~sL 573 (630)
.. -..+|||+.++++..||.++.|..--...+ .... ...|.. + +..++-+ .|...+..+
T Consensus 228 ~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~----~~rc---lhewkphd~~p~vC~l-c~~~~~~~v 299 (1283)
T KOG1916|consen 228 TDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKI----VHRC---LHEWKPHDKHPRVCWL-CHKQEILVV 299 (1283)
T ss_pred ccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccc----cHhh---hhccCCCCCCCceeee-eccccccCC
Confidence 32 236999999999999999877654210000 0000 134554 2 3334444 555544444
Q ss_pred EEcCCCeEEEEEC-CCcEEEEeCCCCcEE
Q 006825 574 SWSKSQHLLSSSM-DKTVRLWHLSSKTCL 601 (630)
Q Consensus 574 afSPd~~LaSgS~-DgtVrIWDl~tg~~l 601 (630)
....-.++++++. ...+++|....-+|+
T Consensus 300 ~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 300 SIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred ccceeEEEEecccCCcceeEeeccchhhh
Confidence 3322256777765 567999999888888
No 359
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=90.73 E-value=23 Score=36.76 Aligned_cols=202 Identities=9% Similarity=0.006 Sum_probs=95.8
Q ss_pred CccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCc
Q 006825 378 SWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNG 457 (630)
Q Consensus 378 gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~ 457 (630)
|=.+.|-.++|.|+...|.+ .....+.|..+++.. ++. ....|.+ .+
T Consensus 19 g~~~e~SGLTy~pd~~tLfa----------------------------V~d~~~~i~els~~G-~vl---r~i~l~g-~~ 65 (248)
T PF06977_consen 19 GILDELSGLTYNPDTGTLFA----------------------------VQDEPGEIYELSLDG-KVL---RRIPLDG-FG 65 (248)
T ss_dssp T--S-EEEEEEETTTTEEEE----------------------------EETTTTEEEEEETT---EE---EEEE-SS--S
T ss_pred CccCCccccEEcCCCCeEEE----------------------------EECCCCEEEEEcCCC-CEE---EEEeCCC-CC
Confidence 56667888999987665542 223344555555532 211 1122444 34
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEECcCCce---e---eeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeec
Q 006825 458 SIWSIKFSLDGRYLASAGEDCVIHVWQVVESER---K---GELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKR 531 (630)
Q Consensus 458 ~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~---~---~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~ 531 (630)
-.-.|++.-++.++++--.++.+.+.++..... . ..+.......+...+-.++|.|.+..++.+-...-..++.
T Consensus 66 D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~ 145 (248)
T PF06977_consen 66 DYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYE 145 (248)
T ss_dssp SEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEE
T ss_pred CceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEE
Confidence 577899988888888766789999998843211 1 1111111123455688999999877666653332221111
Q ss_pred ccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC--CeEEEEECCCcEEEEeCCCCcEEEEEe-cC-
Q 006825 532 RGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIFS-HS- 607 (630)
Q Consensus 532 ~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd--~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~- 607 (630)
.... ...... .+.+. ..+.........+.+++++|. .+++-......|-++| .+|+.+..+. ..
T Consensus 146 ~~~~------~~~~~~---~~~~~--~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g 213 (248)
T PF06977_consen 146 VNGF------PGGFDL---FVSDD--QDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRG 213 (248)
T ss_dssp EEST------T-SS-----EEEE---HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STT
T ss_pred Eccc------cCccce---eeccc--cccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCc
Confidence 1100 000000 00000 000011224456789999997 5677778899999999 6788887776 22
Q ss_pred --------CceEEEE-cCCCcEEEEe
Q 006825 608 --------DYDISLV-DRLMLRFAYG 624 (630)
Q Consensus 608 --------~~V~sVa-s~~~~~lAsg 624 (630)
...-.|+ ++++..+.++
T Consensus 214 ~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 214 FHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp GGG-SS---SEEEEEE-TT--EEEEE
T ss_pred ccCcccccCCccEEEECCCCCEEEEc
Confidence 2345666 6666555443
No 360
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=90.65 E-value=27 Score=37.41 Aligned_cols=136 Identities=10% Similarity=-0.019 Sum_probs=74.0
Q ss_pred cCEEEEEEccCCCEEEEEeC---------CCcEEEEECc-CCceeeeeecccccCcccceEEEEECCCCCEEEEeeCC-C
Q 006825 457 GSIWSIKFSLDGRYLASAGE---------DCVIHVWQVV-ESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLD-N 525 (630)
Q Consensus 457 ~~V~sVaFSpDG~~LASgS~---------DgtIrVWDl~-tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~D-g 525 (630)
..-+.+...|+|.+-++-.. -..-.||-+. .+..++. ..++...-+.++|+||++.+..+-.. +
T Consensus 111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l-----~~~~~~~~NGla~SpDg~tly~aDT~~~ 185 (307)
T COG3386 111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRL-----LDDDLTIPNGLAFSPDGKTLYVADTPAN 185 (307)
T ss_pred CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEe-----ecCcEEecCceEECCCCCEEEEEeCCCC
Confidence 34568888899987666433 1112455554 3443333 24445556689999999776665333 4
Q ss_pred eeeeecccccccccccccCccccccEEEeCCCCce-EEeccCCCCEEEEEEcCCCeEE-EEECCC-cEEEEeCCCCcEEE
Q 006825 526 HLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPI-CSFQGHLDDVLDLSWSKSQHLL-SSSMDK-TVRLWHLSSKTCLK 602 (630)
Q Consensus 526 ~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l-~tL~GHs~~V~sLafSPd~~La-SgS~Dg-tVrIWDl~tg~~l~ 602 (630)
.|..+.... ... .+.++.. ..+..+.+..-.++...++.|. ++-..| .|.+|+.. |+++.
T Consensus 186 ~i~r~~~d~----~~g------------~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~ 248 (307)
T COG3386 186 RIHRYDLDP----ATG------------PIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLG 248 (307)
T ss_pred eEEEEecCc----ccC------------ccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEE
Confidence 442111110 000 0011111 1122233334455555564444 444444 89999988 99999
Q ss_pred EEe-cCCceEEEE
Q 006825 603 IFS-HSDYDISLV 614 (630)
Q Consensus 603 t~~-H~~~V~sVa 614 (630)
.+. ....+++++
T Consensus 249 ~i~lP~~~~t~~~ 261 (307)
T COG3386 249 EIKLPVKRPTNPA 261 (307)
T ss_pred EEECCCCCCccce
Confidence 998 547778777
No 361
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=90.32 E-value=6.1 Score=48.53 Aligned_cols=68 Identities=18% Similarity=-0.027 Sum_probs=54.5
Q ss_pred cCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeee
Q 006825 457 GSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKK 530 (630)
Q Consensus 457 ~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~ 530 (630)
+.|.++.|..++.-+..+..+|.|.+=|..+....-. ......|.+++|+||..+++-.....++.+-
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eiv------g~vd~GI~aaswS~Dee~l~liT~~~tll~m 136 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIV------GNVDNGISAASWSPDEELLALITGRQTLLFM 136 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeee------eeccCceEEEeecCCCcEEEEEeCCcEEEEE
Confidence 6899999999999888899999999988876543221 3445789999999999999988887777543
No 362
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=90.03 E-value=26 Score=36.26 Aligned_cols=108 Identities=7% Similarity=0.007 Sum_probs=65.8
Q ss_pred cCcCEEEEEEccCCCE-EEEEeCCCcEEEEE--CcCCceee-----eeecccccCcccceEEEEECCCCCEEEEeeCCCe
Q 006825 455 HNGSIWSIKFSLDGRY-LASAGEDCVIHVWQ--VVESERKG-----ELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNH 526 (630)
Q Consensus 455 Ht~~V~sVaFSpDG~~-LASgS~DgtIrVWD--l~tg~~~~-----~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~ 526 (630)
.-+.-+.++|+.|-+. .++-+.+-+|.-|| ..+|.... .+.......+ ..--.+++..+|.+.++.-..++
T Consensus 156 ~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~-~~PDGm~ID~eG~L~Va~~ng~~ 234 (310)
T KOG4499|consen 156 CVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFES-LEPDGMTIDTEGNLYVATFNGGT 234 (310)
T ss_pred hccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCC-CCCCcceEccCCcEEEEEecCcE
Confidence 3344567888877664 45567888898888 55554321 1110000011 01113344556777777777777
Q ss_pred eeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEc-CC-CeE-EEEEC
Q 006825 527 LEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWS-KS-QHL-LSSSM 586 (630)
Q Consensus 527 I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafS-Pd-~~L-aSgS~ 586 (630)
| ..+++ +|+.+.+++-.+..|++++|- |+ ..| +|+..
T Consensus 235 V-----------------------~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~aa 275 (310)
T KOG4499|consen 235 V-----------------------QKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVTTAA 275 (310)
T ss_pred E-----------------------EEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEEehh
Confidence 6 45555 899999999899999999996 44 444 45443
No 363
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=89.81 E-value=8.2 Score=46.32 Aligned_cols=141 Identities=8% Similarity=0.042 Sum_probs=90.4
Q ss_pred EEEecCCcEEEEEeCCCCcccceeeeeEecccCcC-EEEEEEcc-----CCCEEEEEeCCCcEEEEECcCCceeeeeec-
Q 006825 424 SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGS-IWSIKFSL-----DGRYLASAGEDCVIHVWQVVESERKGELLE- 496 (630)
Q Consensus 424 l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~-V~sVaFSp-----DG~~LASgS~DgtIrVWDl~tg~~~~~l~~- 496 (630)
+.......+|+..|+..++ .+.+++.|... |..++=.. ...-.+.|-.+..|..||.+-... .+..
T Consensus 497 l~~~~~~~~ly~mDLe~GK-----VV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~--k~v~~ 569 (794)
T PF08553_consen 497 LLDPNNPNKLYKMDLERGK-----VVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN--KLVDS 569 (794)
T ss_pred eecCCCCCceEEEecCCCc-----EEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCC--ceeec
Confidence 4555567788889988876 46778777754 55553221 123345677788999999975431 1110
Q ss_pred -ccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEE-eccCCCCEEEEE
Q 006825 497 -KQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICS-FQGHLDDVLDLS 574 (630)
Q Consensus 497 -~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~t-L~GHs~~V~sLa 574 (630)
...........+++-+.+| +||.|+.+|.| ++|+-.|+.-++ |.|-..+|..|.
T Consensus 570 ~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~I-----------------------RLyd~~g~~AKT~lp~lG~pI~~iD 625 (794)
T PF08553_consen 570 QSKQYSSKNNFSCFATTEDG-YIAVGSNKGDI-----------------------RLYDRLGKRAKTALPGLGDPIIGID 625 (794)
T ss_pred cccccccCCCceEEEecCCc-eEEEEeCCCcE-----------------------EeecccchhhhhcCCCCCCCeeEEE
Confidence 0011233456677777776 57888999999 566554443333 457789999999
Q ss_pred EcCCCeEEEEECCCcEEEEeC
Q 006825 575 WSKSQHLLSSSMDKTVRLWHL 595 (630)
Q Consensus 575 fSPd~~LaSgS~DgtVrIWDl 595 (630)
.+.|+..+-|-.+..+-|+++
T Consensus 626 vt~DGkwilaTc~tyLlLi~t 646 (794)
T PF08553_consen 626 VTADGKWILATCKTYLLLIDT 646 (794)
T ss_pred ecCCCcEEEEeecceEEEEEE
Confidence 999943344444677888886
No 364
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.32 E-value=1.5 Score=53.00 Aligned_cols=99 Identities=14% Similarity=0.180 Sum_probs=66.7
Q ss_pred eEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCc
Q 006825 423 VSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGH 502 (630)
Q Consensus 423 ~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh 502 (630)
.++.|+.-|.|...|+.+. +. ....=..-+++|++++|+.+|++++.|-.+|.|.+||+..+...+.+.... ..+
T Consensus 101 ~ivi~Ts~ghvl~~d~~~n-L~---~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~-ap~ 175 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGN-LG---PLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHG-APV 175 (1206)
T ss_pred eEEEEcCchhhhhhhhhcc-cc---hhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecC-Ccc
Confidence 3677777778877776543 11 001112235789999999999999999999999999999988877763111 112
Q ss_pred ccceEEEEECCCCCEEEEeeCCCee
Q 006825 503 LNMLLLANGSPEPTSLSPKHLDNHL 527 (630)
Q Consensus 503 ~~~V~svafSpdg~~lasgs~Dg~I 527 (630)
..|..+-+..++..++++-..|.+
T Consensus 176 -t~vi~v~~t~~nS~llt~D~~Gsf 199 (1206)
T KOG2079|consen 176 -TGVIFVGRTSQNSKLLTSDTGGSF 199 (1206)
T ss_pred -ceEEEEEEeCCCcEEEEccCCCce
Confidence 334445555566677777777753
No 365
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=89.28 E-value=5.1 Score=43.88 Aligned_cols=109 Identities=16% Similarity=0.092 Sum_probs=65.1
Q ss_pred CEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEE
Q 006825 382 SIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWS 461 (630)
Q Consensus 382 ~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~s 461 (630)
.+...++||||++++-+-+ ..|+....|+++|+.+++.. ...+..-. ...
T Consensus 125 ~~~~~~~Spdg~~la~~~s------------------------~~G~e~~~l~v~Dl~tg~~l----~d~i~~~~--~~~ 174 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLS------------------------DGGSEWYTLRVFDLETGKFL----PDGIENPK--FSS 174 (414)
T ss_dssp EEEEEEETTTSSEEEEEEE------------------------ETTSSEEEEEEEETTTTEEE----EEEEEEEE--SEE
T ss_pred EeeeeeECCCCCEEEEEec------------------------CCCCceEEEEEEECCCCcCc----CCcccccc--cce
Confidence 3456889999998874311 22455578999999988542 22222211 123
Q ss_pred EEEccCCCEEEEEeCCC-----------cEEEEECcCCceeeeeecccccCcc-c-ceEEEEECCCCCEEEEeeC
Q 006825 462 IKFSLDGRYLASAGEDC-----------VIHVWQVVESERKGELLEKQEDGHL-N-MLLLANGSPEPTSLSPKHL 523 (630)
Q Consensus 462 VaFSpDG~~LASgS~Dg-----------tIrVWDl~tg~~~~~l~~~~~~gh~-~-~V~svafSpdg~~lasgs~ 523 (630)
+.|.+|++.|+-...|. .|+.|.+.+....-.++ +.... . ....+..++|+++++....
T Consensus 175 ~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lv---fe~~~~~~~~~~~~~s~d~~~l~i~~~ 246 (414)
T PF02897_consen 175 VSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELV---FEEPDEPFWFVSVSRSKDGRYLFISSS 246 (414)
T ss_dssp EEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEE---EC-TTCTTSEEEEEE-TTSSEEEEEEE
T ss_pred EEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeE---EeecCCCcEEEEEEecCcccEEEEEEE
Confidence 99999988776665443 37888887665432232 22222 2 2567888999998776443
No 366
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=89.23 E-value=3.5 Score=48.84 Aligned_cols=69 Identities=14% Similarity=0.160 Sum_probs=55.2
Q ss_pred EeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCc
Q 006825 416 ATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE 489 (630)
Q Consensus 416 a~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~ 489 (630)
++.+.+.- ++.|-.-|.+.+|...+.+.. .....|+.+|..+.|||+|..|+|+..=|.|.+|......
T Consensus 64 SLCWHpe~~vLa~gwe~g~~~v~~~~~~e~h-----tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g 134 (1416)
T KOG3617|consen 64 SLCWHPEEFVLAQGWEMGVSDVQKTNTTETH-----TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIG 134 (1416)
T ss_pred hhccChHHHHHhhccccceeEEEecCCceee-----eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeecc
Confidence 34555554 788888999999998877532 2235699999999999999999999999999999876433
No 367
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=89.08 E-value=12 Score=43.74 Aligned_cols=121 Identities=13% Similarity=0.075 Sum_probs=71.8
Q ss_pred cCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEE--CCCCCEEEEeeCCCeeeeecccc
Q 006825 457 GSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANG--SPEPTSLSPKHLDNHLEKKRRGR 534 (630)
Q Consensus 457 ~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svaf--Spdg~~lasgs~Dg~I~i~~~~~ 534 (630)
....-+.-+.-++..+.-+.-.++.|||...+....+-. + .....|..+.| .|+++.+++-+-...|.++...+
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~---f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R 105 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEES---F-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLR 105 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeee---e-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccc
Confidence 344555555555544443444569999998877544421 1 34567887777 57889888888888887666544
Q ss_pred cccccccccCccccccEEEeCCCCceEE--eccCC-CCEEEEEEcCCCeEEEEECCCcEEEEeC
Q 006825 535 SINRKSLSLDHMVVPETVFALSDKPICS--FQGHL-DDVLDLSWSKSQHLLSSSMDKTVRLWHL 595 (630)
Q Consensus 535 ~~~~~s~s~d~~i~~~~Vwdlsgk~l~t--L~GHs-~~V~sLafSPd~~LaSgS~DgtVrIWDl 595 (630)
........ -| .+++. +..|+ .+|.+..|.+++.|+.|+. +.+.|+|-
T Consensus 106 ~dy~~~~p---------~w----~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG-Nqlfv~dk 155 (631)
T PF12234_consen 106 YDYTNKGP---------SW----APIRKIDISSHTPHPIGDSIWLKDGTLVVGSG-NQLFVFDK 155 (631)
T ss_pred hhhhcCCc---------cc----ceeEEEEeecCCCCCccceeEecCCeEEEEeC-CEEEEECC
Confidence 11000000 01 11111 22344 4799999999987777764 46777764
No 368
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=88.82 E-value=22 Score=39.46 Aligned_cols=188 Identities=13% Similarity=0.074 Sum_probs=84.3
Q ss_pred cceEEEeecCCCe-EEEecCCcEEEEEeCCCCcccceeeeeE--ec-ccCcCEEEEEEcc-----CC---CEEEEEeCCC
Q 006825 411 RRSSSATDDSQDV-SFHGQERVRVRQYGKSCKDLTALYKCQE--IQ-AHNGSIWSIKFSL-----DG---RYLASAGEDC 478 (630)
Q Consensus 411 ~~~Vsa~~~s~d~-l~Sgs~Dg~VriWd~~~~el~~~~~v~t--L~-gHt~~V~sVaFSp-----DG---~~LASgS~Dg 478 (630)
+..|++++.+..| ++.|..+|.+.+.|.+.........+.. +. .....|++|.|+. |+ -+|+.|...|
T Consensus 86 ~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G 165 (395)
T PF08596_consen 86 QGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSG 165 (395)
T ss_dssp S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTS
T ss_pred CCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCC
Confidence 4556666666666 6778889999999998775432211111 11 1345688999973 33 3688888889
Q ss_pred cEEEEECcC--Cc-eeeeeecccccCcccceEEEE-ECCCCCEEEEeeCCCeeeeeccccccc---ccccccCccccccE
Q 006825 479 VIHVWQVVE--SE-RKGELLEKQEDGHLNMLLLAN-GSPEPTSLSPKHLDNHLEKKRRGRSIN---RKSLSLDHMVVPET 551 (630)
Q Consensus 479 tIrVWDl~t--g~-~~~~l~~~~~~gh~~~V~sva-fSpdg~~lasgs~Dg~I~i~~~~~~~~---~~s~s~d~~i~~~~ 551 (630)
.+.+|.+.- +. ...++. .....+...|..+. +..+...-+.+.. ..+ ........ ...+..+..+ +
T Consensus 166 ~v~~fkIlp~~~g~f~v~~~-~~~~~~~~~i~~I~~i~~~~G~~a~At~-~~~--~~l~~g~~i~g~vVvvSe~~i---r 238 (395)
T PF08596_consen 166 NVLTFKILPSSNGRFSVQFA-GATTNHDSPILSIIPINADTGESALATI-SAM--QGLSKGISIPGYVVVVSESDI---R 238 (395)
T ss_dssp EEEEEEEEE-GGG-EEEEEE-EEE--SS----EEEEEETTT--B-B-BH-HHH--HGGGGT----EEEEEE-SSEE---E
T ss_pred CEEEEEEecCCCCceEEEEe-eccccCCCceEEEEEEECCCCCcccCch-hHh--hccccCCCcCcEEEEEcccce---E
Confidence 999998741 11 111111 11112333333322 2111110000000 000 00000000 0011111112 5
Q ss_pred EEeC-CCCceEEeccCCCCEEEEEEc-----CC-CeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825 552 VFAL-SDKPICSFQGHLDDVLDLSWS-----KS-QHLLSSSMDKTVRLWHLSSKTCLKIFS 605 (630)
Q Consensus 552 Vwdl-sgk~l~tL~GHs~~V~sLafS-----Pd-~~LaSgS~DgtVrIWDl~tg~~l~t~~ 605 (630)
++.. +.+..+......-.+..+.+- .. ..|+.-..+|.|+++-+..-+.+..+.
T Consensus 239 v~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~ 299 (395)
T PF08596_consen 239 VFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVS 299 (395)
T ss_dssp EE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE
T ss_pred EEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhccc
Confidence 6665 444444433222223344453 23 677888899999999999988777765
No 369
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=87.47 E-value=16 Score=40.84 Aligned_cols=148 Identities=16% Similarity=0.143 Sum_probs=87.1
Q ss_pred eEecccCcCEEEEEEccCCCEEEEEe---CC-CcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEe-eCC
Q 006825 450 QEIQAHNGSIWSIKFSLDGRYLASAG---ED-CVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPK-HLD 524 (630)
Q Consensus 450 ~tL~gHt~~V~sVaFSpDG~~LASgS---~D-gtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasg-s~D 524 (630)
+.+..-...+..-+|+|+++.++--. .. ..+.++++.+++....+- +. ..-...+|+|||+.++.+ ..|
T Consensus 186 ~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~---~~---g~~~~P~fspDG~~l~f~~~rd 259 (425)
T COG0823 186 QKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN---FN---GNNGAPAFSPDGSKLAFSSSRD 259 (425)
T ss_pred eEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec---cC---CccCCccCCCCCCEEEEEECCC
Confidence 34444556788889999998766652 22 458999999888766542 22 333457899999887765 455
Q ss_pred CeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEE-CCCcEEEE--eCCCCcE
Q 006825 525 NHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSS-MDKTVRLW--HLSSKTC 600 (630)
Q Consensus 525 g~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS-~DgtVrIW--Dl~tg~~ 600 (630)
+...+ .+.++.++.+..|..-.+.-..=.|+|| ++|+-.+ ..|.=.|| ++..+..
T Consensus 260 g~~~i---------------------y~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~ 318 (425)
T COG0823 260 GSPDI---------------------YLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV 318 (425)
T ss_pred CCccE---------------------EEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce
Confidence 55422 4555655555554433333336678999 6666444 45554555 4444443
Q ss_pred EE-EEecCCceEEEE-cCCCcEEEEec
Q 006825 601 LK-IFSHSDYDISLV-DRLMLRFAYGA 625 (630)
Q Consensus 601 l~-t~~H~~~V~sVa-s~~~~~lAsgs 625 (630)
.+ ++.-.... .-. +|++..++..+
T Consensus 319 ~riT~~~~~~~-~p~~SpdG~~i~~~~ 344 (425)
T COG0823 319 TRLTFSGGGNS-NPVWSPDGDKIVFES 344 (425)
T ss_pred eEeeccCCCCc-CccCCCCCCEEEEEe
Confidence 22 22222222 222 78888877765
No 370
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=87.04 E-value=2.1 Score=32.30 Aligned_cols=33 Identities=24% Similarity=0.272 Sum_probs=27.0
Q ss_pred cCEEEEEEccCC---CEEEEEeCCCcEEEEECcCCc
Q 006825 457 GSIWSIKFSLDG---RYLASAGEDCVIHVWQVVESE 489 (630)
Q Consensus 457 ~~V~sVaFSpDG---~~LASgS~DgtIrVWDl~tg~ 489 (630)
++|.+++|+|.. .+|+-+-.-+.|.|+|+++..
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~f 36 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSNF 36 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccCc
Confidence 579999999854 488888777899999998643
No 371
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=86.75 E-value=50 Score=35.59 Aligned_cols=79 Identities=15% Similarity=0.146 Sum_probs=41.7
Q ss_pred EEEEEeCCCCcccceeeeeEecccCcCEEE-EEEccCCCE-EEEEeCC--CcEEEEECcCC--ceeeeeecccccCcccc
Q 006825 432 RVRQYGKSCKDLTALYKCQEIQAHNGSIWS-IKFSLDGRY-LASAGED--CVIHVWQVVES--ERKGELLEKQEDGHLNM 505 (630)
Q Consensus 432 ~VriWd~~~~el~~~~~v~tL~gHt~~V~s-VaFSpDG~~-LASgS~D--gtIrVWDl~tg--~~~~~l~~~~~~gh~~~ 505 (630)
.|.+++...+. .+.|....-.|.. +.|+++++. .++|..+ ..-+||-+.-. ..+..|. .....|
T Consensus 261 hly~~~~~~~~------~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT-~~~~~~--- 330 (353)
T PF00930_consen 261 HLYLYDLDGGK------PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLT-CEDGDH--- 330 (353)
T ss_dssp EEEEEETTSSE------EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESS-TTSSTT---
T ss_pred EEEEEcccccc------eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEecc-CCCCCc---
Confidence 45555665553 3345555566744 677887664 4456543 34555554332 3333321 111222
Q ss_pred eEEEEECCCCCEEEEe
Q 006825 506 LLLANGSPEPTSLSPK 521 (630)
Q Consensus 506 V~svafSpdg~~lasg 521 (630)
..+.|+|++++++-.
T Consensus 331 -~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 331 -YSASFSPDGKYYVDT 345 (353)
T ss_dssp -EEEEE-TTSSEEEEE
T ss_pred -eEEEECCCCCEEEEE
Confidence 789999999988764
No 372
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=85.13 E-value=45 Score=37.39 Aligned_cols=140 Identities=12% Similarity=-0.074 Sum_probs=64.0
Q ss_pred ecCCCccEecccCCCCceeEEecCCccC-CEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcE
Q 006825 354 GNKDSFDLNNNGSSGGGMKSKKKGSWFK-SIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVR 432 (630)
Q Consensus 354 gS~D~tvr~vWD~~tG~~~~~lk~gH~~-~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~ 432 (630)
+..-.++. +||+.+.+.++++..|-.+ -...|-|..+-. ...+++.+.-..+
T Consensus 218 ~~yG~~l~-vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~--------------------------~~~gFvg~aLss~ 270 (461)
T PF05694_consen 218 GKYGHSLH-VWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPD--------------------------ANYGFVGCALSSS 270 (461)
T ss_dssp H-S--EEE-EEETTTTEEEEEEES-TTEEEEEEEEE-SSTT----------------------------EEEEEEE--EE
T ss_pred ccccCeEE-EEECCCCcEeeEEecCCCCCceEEEEecCCCC--------------------------ccceEEEEeccce
Confidence 34457777 9999999999998865433 234566665421 1112333333445
Q ss_pred EEEEeC-CCCcccceeeeeEecc-----------------cCcCEEEEEEccCCCEEEEEe-CCCcEEEEECcCCceee-
Q 006825 433 VRQYGK-SCKDLTALYKCQEIQA-----------------HNGSIWSIKFSLDGRYLASAG-EDCVIHVWQVVESERKG- 492 (630)
Q Consensus 433 VriWd~-~~~el~~~~~v~tL~g-----------------Ht~~V~sVaFSpDG~~LASgS-~DgtIrVWDl~tg~~~~- 492 (630)
|+.|-. ..++... ..+.++.. -..-|+.|.+|.|.++|.... .+|.||.||+.+....+
T Consensus 271 i~~~~k~~~g~W~a-~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl 349 (461)
T PF05694_consen 271 IWRFYKDDDGEWAA-EKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKL 349 (461)
T ss_dssp EEEEEE-ETTEEEE-EEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EE
T ss_pred EEEEEEcCCCCeee-eEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcE
Confidence 555533 2222211 12222211 135689999999999887655 78999999998754332
Q ss_pred --eeeccccc-----------CcccceEEEEECCCCCEEEEe
Q 006825 493 --ELLEKQED-----------GHLNMLLLANGSPEPTSLSPK 521 (630)
Q Consensus 493 --~l~~~~~~-----------gh~~~V~svafSpdg~~lasg 521 (630)
++...... .-.+....+..|.||+.+...
T Consensus 350 ~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 350 VGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT 391 (461)
T ss_dssp EEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred EeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence 22211100 011233577788888776654
No 373
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=84.77 E-value=29 Score=37.68 Aligned_cols=66 Identities=9% Similarity=0.022 Sum_probs=36.6
Q ss_pred CcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCc----eeeeeecccccC---cccceEEEEECCCCCEEEEeeC
Q 006825 456 NGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE----RKGELLEKQEDG---HLNMLLLANGSPEPTSLSPKHL 523 (630)
Q Consensus 456 t~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~----~~~~l~~~~~~g---h~~~V~svafSpdg~~lasgs~ 523 (630)
......|+|.++| ++++ .....+++.+..... ....+....... +......+++.|||.++++-+.
T Consensus 71 l~~p~Gi~~~~~G-lyV~-~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~ 143 (367)
T TIGR02604 71 LSMVTGLAVAVGG-VYVA-TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGN 143 (367)
T ss_pred CCCccceeEecCC-EEEe-CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEeccc
Confidence 3456889999999 5554 444444454553211 111222111111 2345778999999998877553
No 374
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=82.82 E-value=63 Score=33.51 Aligned_cols=206 Identities=11% Similarity=-0.004 Sum_probs=93.1
Q ss_pred eeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCC
Q 006825 334 MCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGG 410 (630)
Q Consensus 334 ~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh 410 (630)
.+.|-..-+..|.+.| .|++-.+..... ++=..+|+.+++....-.+-.-.|++.-+|.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i-~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~------------ 82 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEI-YELSLDGKVLRRIPLDGFGDYEGITYLGNGRYVLSE------------ 82 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEE-EEEETT--EEEEEE-SS-SSEEEEEE-STTEEEEEE------------
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEE-EEEcCCCCEEEEEeCCCCCCceeEEEECCCEEEEEE------------
Confidence 3445445577888877 344444433333 332235776666653334556667776666555432
Q ss_pred cceEEEeecCCCeEEEecCCcEEEEEeCC--CCcccce--ee--eeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 006825 411 RRSSSATDDSQDVSFHGQERVRVRQYGKS--CKDLTAL--YK--CQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQ 484 (630)
Q Consensus 411 ~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~--~~el~~~--~~--v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWD 484 (630)
-.++.+.++... +..+... .. +.....+...+-.|+|.+.++.|+.+-+..-.+|+.
T Consensus 83 -----------------Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~ 145 (248)
T PF06977_consen 83 -----------------ERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYE 145 (248)
T ss_dssp -----------------TTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEE
T ss_pred -----------------cCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEE
Confidence 123334444331 1111000 00 011123566799999999888788888887788887
Q ss_pred CcC---Cceeeeeeccc---ccCcccceEEEEECCC-CCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCC
Q 006825 485 VVE---SERKGELLEKQ---EDGHLNMLLLANGSPE-PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD 557 (630)
Q Consensus 485 l~t---g~~~~~l~~~~---~~gh~~~V~svafSpd-g~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsg 557 (630)
+.. ........... ......-+..++++|. +.+++-......| ..++..|
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l-----------------------~~~d~~G 202 (248)
T PF06977_consen 146 VNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLL-----------------------LELDRQG 202 (248)
T ss_dssp EESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEE-----------------------EEE-TT-
T ss_pred EccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeE-----------------------EEECCCC
Confidence 754 22221111000 1223345678999988 4555555555555 4455566
Q ss_pred CceEEec--c--C-----CCCEEEEEEcCCCeEEEEECCCcEEE
Q 006825 558 KPICSFQ--G--H-----LDDVLDLSWSKSQHLLSSSMDKTVRL 592 (630)
Q Consensus 558 k~l~tL~--G--H-----s~~V~sLafSPd~~LaSgS~DgtVrI 592 (630)
+++..+. . | -..--.|+|.+++.|.-.|.-+..++
T Consensus 203 ~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~ 246 (248)
T PF06977_consen 203 RVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYR 246 (248)
T ss_dssp -EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEE
T ss_pred CEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEE
Confidence 6554432 1 1 12457899998855555556554443
No 375
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.33 E-value=22 Score=40.41 Aligned_cols=151 Identities=10% Similarity=0.067 Sum_probs=95.6
Q ss_pred eEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCC--EE-----EEEeCCCcEEEEEC
Q 006825 413 SSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGR--YL-----ASAGEDCVIHVWQV 485 (630)
Q Consensus 413 ~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~--~L-----ASgS~DgtIrVWDl 485 (630)
.+.-.+.+...+.++.....++..|+..+++ +.+.+-|.. |.-+.|.|+.+ .| +.|-.|..|.-||.
T Consensus 338 ~mL~~~dsnlil~~~~~~~~l~klDIE~GKI-----VeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDp 411 (644)
T KOG2395|consen 338 AMLHRADSNLILMDGGEQDKLYKLDIERGKI-----VEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDP 411 (644)
T ss_pred hhhhccccceEeeCCCCcCcceeeeccccee-----eeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecc
Confidence 4444455555577888888899999988864 566777776 88888888754 12 23556788888998
Q ss_pred cCCceeeeeecccccCc----ccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceE
Q 006825 486 VESERKGELLEKQEDGH----LNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPIC 561 (630)
Q Consensus 486 ~tg~~~~~l~~~~~~gh----~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~ 561 (630)
+-... ..|.. ..+| .....|.+-..+| +|+.|+.+|.| ++|+-.+...+
T Consensus 412 Rv~~~-~kl~~--~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdI-----------------------RLYdri~~~AK 464 (644)
T KOG2395|consen 412 RVQGK-NKLAV--VQSKQYSTKNNFSCFATTESG-YIVVGSLKGDI-----------------------RLYDRIGRRAK 464 (644)
T ss_pred cccCc-ceeee--eeccccccccccceeeecCCc-eEEEeecCCcE-----------------------Eeehhhhhhhh
Confidence 63221 11110 1222 2334455555555 67888999999 55554333322
Q ss_pred -EeccCCCCEEEEEEcCCCeEEEEECCCcEEEEeCC
Q 006825 562 -SFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLS 596 (630)
Q Consensus 562 -tL~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~ 596 (630)
.|.|-..+|..|..+.++..+-|..+.++.|-++.
T Consensus 465 TAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 465 TALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL 500 (644)
T ss_pred hcccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence 35677888999999888444444556777777653
No 376
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=81.45 E-value=1e+02 Score=34.95 Aligned_cols=26 Identities=0% Similarity=0.002 Sum_probs=22.5
Q ss_pred eEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825 580 HLLSSSMDKTVRLWHLSSKTCLKIFS 605 (630)
Q Consensus 580 ~LaSgS~DgtVrIWDl~tg~~l~t~~ 605 (630)
+++.++.+|.+...|..+|+.+..+.
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~ 328 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARP 328 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeE
Confidence 57788899999999999999887664
No 377
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=80.40 E-value=4.9 Score=46.03 Aligned_cols=38 Identities=29% Similarity=0.525 Sum_probs=29.1
Q ss_pred CCEEEEEEcC----C-CeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825 568 DDVLDLSWSK----S-QHLLSSSMDKTVRLWHLSSKTCLKIFS 605 (630)
Q Consensus 568 ~~V~sLafSP----d-~~LaSgS~DgtVrIWDl~tg~~l~t~~ 605 (630)
..+..++++. + .+|++-+.|+++||||+.+++|++++.
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEec
Confidence 3455566655 4 899999999999999999999988764
No 378
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=79.60 E-value=46 Score=36.14 Aligned_cols=141 Identities=16% Similarity=0.116 Sum_probs=76.5
Q ss_pred cEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEe----------CCCcEEEEECcCCceeeeeecccc-
Q 006825 431 VRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG----------EDCVIHVWQVVESERKGELLEKQE- 499 (630)
Q Consensus 431 g~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS----------~DgtIrVWDl~tg~~~~~l~~~~~- 499 (630)
++|.++|...+++.++. = .+..-.+.++|||+.++++. ..-.|.+||..+-....++.....
T Consensus 17 ~rv~viD~d~~k~lGmi----~---~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~ 89 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMI----D---TGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKP 89 (342)
T ss_dssp EEEEEEETTTTEEEEEE----E---EESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-
T ss_pred ceEEEEECCCCcEEEEe----e---cccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcc
Confidence 47999998877653321 1 12233466899999888754 334699999999888777542211
Q ss_pred cC-cccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcC
Q 006825 500 DG-HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSK 577 (630)
Q Consensus 500 ~g-h~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSP 577 (630)
.. .......++++.|+++++.. .+++...+ .|-|+ .++.+.++.-. .+..+--++
T Consensus 90 R~~~~~~~~~~~ls~dgk~~~V~------------------N~TPa~SV---tVVDl~~~kvv~ei~~P--GC~~iyP~~ 146 (342)
T PF06433_consen 90 RAQVVPYKNMFALSADGKFLYVQ------------------NFTPATSV---TVVDLAAKKVVGEIDTP--GCWLIYPSG 146 (342)
T ss_dssp B--BS--GGGEEE-TTSSEEEEE------------------EESSSEEE---EEEETTTTEEEEEEEGT--SEEEEEEEE
T ss_pred hheecccccceEEccCCcEEEEE------------------ccCCCCeE---EEEECCCCceeeeecCC--CEEEEEecC
Confidence 11 11122245677777776553 11222222 55666 33344333211 111221122
Q ss_pred CCeEEEEECCCcEEEEeCC-CCcEE
Q 006825 578 SQHLLSSSMDKTVRLWHLS-SKTCL 601 (630)
Q Consensus 578 d~~LaSgS~DgtVrIWDl~-tg~~l 601 (630)
+.-|.+-|.||++.-..+. .|+..
T Consensus 147 ~~~F~~lC~DGsl~~v~Ld~~Gk~~ 171 (342)
T PF06433_consen 147 NRGFSMLCGDGSLLTVTLDADGKEA 171 (342)
T ss_dssp TTEEEEEETTSCEEEEEETSTSSEE
T ss_pred CCceEEEecCCceEEEEECCCCCEe
Confidence 3567788888888888776 45544
No 379
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=79.44 E-value=87 Score=32.96 Aligned_cols=52 Identities=10% Similarity=-0.100 Sum_probs=38.6
Q ss_pred ecceEeecCCCccEecccCCCCceeEEecCCccCCEEE-EEEcCCCCeEEeecCCC
Q 006825 348 RQNVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRT-VASSVTGHKERRSSDER 402 (630)
Q Consensus 348 s~~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~s-VAfSpdG~~lasgS~D~ 402 (630)
..+++-|+..+.+- +-+++||....++.. ...|++ ....++|.++-.|+.|.
T Consensus 63 gdfVV~GCy~g~lY-fl~~~tGs~~w~f~~--~~~vk~~a~~d~~~glIycgshd~ 115 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLY-FLCVKTGSQIWNFVI--LETVKVRAQCDFDGGLIYCGSHDG 115 (354)
T ss_pred CCEEEEEEccCcEE-EEEecchhheeeeee--hhhhccceEEcCCCceEEEecCCC
Confidence 33688899999988 889999988777663 333432 34567888999999887
No 380
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=78.22 E-value=1.1e+02 Score=33.47 Aligned_cols=193 Identities=9% Similarity=-0.033 Sum_probs=113.7
Q ss_pred eEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEec--
Q 006825 351 VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQ-- 428 (630)
Q Consensus 351 laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs-- 428 (630)
.+....+..+. +-|..+-+.++....|+ .-..++++|+|+.+.. +-.
T Consensus 89 yv~~~~~~~v~-vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV----------------------------~n~~~ 137 (381)
T COG3391 89 YVTTGDSNTVS-VIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYV----------------------------ANAGN 137 (381)
T ss_pred EEecCCCCeEE-EEcCcccceeeEeeecc--CCceEEECCCCCEEEE----------------------------Eeccc
Confidence 34444466777 77777777777666555 4556899998876532 112
Q ss_pred CCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEE-eCCCcEEEEECcCCceeeeeecccccCcccceE
Q 006825 429 ERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASA-GEDCVIHVWQVVESERKGELLEKQEDGHLNMLL 507 (630)
Q Consensus 429 ~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASg-S~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~ 507 (630)
...++.+.|..+..+ ++++..-..+ ..+++.|+|++++.+ ..+++|.+.|........ -.......-...-.
T Consensus 138 ~~~~vsvid~~t~~~-----~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~ 210 (381)
T COG3391 138 GNNTVSVIDAATNKV-----TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPA 210 (381)
T ss_pred CCceEEEEeCCCCeE-----EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCc
Confidence 456777777766643 2222222234 899999999965555 478999999976554432 10000112223345
Q ss_pred EEEECCCCCEEEEeeCC---CeeeeecccccccccccccCccccccEEEeC-CCCceEE-ec-cCCCCEEEEEEcCC-Ce
Q 006825 508 LANGSPEPTSLSPKHLD---NHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICS-FQ-GHLDDVLDLSWSKS-QH 580 (630)
Q Consensus 508 svafSpdg~~lasgs~D---g~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~t-L~-GHs~~V~sLafSPd-~~ 580 (630)
.+.+.|++..+...-.. +.+ ...+. ++..... +. +-. .-..+.+.|+ .+
T Consensus 211 ~i~v~~~g~~~yV~~~~~~~~~v-----------------------~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~ 266 (381)
T COG3391 211 GIAVDPDGNRVYVANDGSGSNNV-----------------------LKIDTATGNVTATDLPVGSG-APRGVAVDPAGKA 266 (381)
T ss_pred eEEECCCCCEEEEEeccCCCceE-----------------------EEEeCCCceEEEeccccccC-CCCceeECCCCCE
Confidence 78889998866554333 233 22333 2222222 11 111 3456788888 55
Q ss_pred EEEE-ECCCcEEEEeCCCCcEEEEEe
Q 006825 581 LLSS-SMDKTVRLWHLSSKTCLKIFS 605 (630)
Q Consensus 581 LaSg-S~DgtVrIWDl~tg~~l~t~~ 605 (630)
+... +.-++|.+-|..+.+....+.
T Consensus 267 ~yv~~~~~~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 267 AYVANSQGGTVSVIDGATDRVVKTGP 292 (381)
T ss_pred EEEEecCCCeEEEEeCCCCceeeeec
Confidence 5555 445889999999888887775
No 381
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=77.56 E-value=99 Score=35.95 Aligned_cols=137 Identities=16% Similarity=0.183 Sum_probs=75.0
Q ss_pred cccCcCEEEEEEccCC-----CEEEEEeCCCcEEEEECcC--Cceeeeeeccc-ccCcccce--EEEEECCCCCEEEEee
Q 006825 453 QAHNGSIWSIKFSLDG-----RYLASAGEDCVIHVWQVVE--SERKGELLEKQ-EDGHLNML--LLANGSPEPTSLSPKH 522 (630)
Q Consensus 453 ~gHt~~V~sVaFSpDG-----~~LASgS~DgtIrVWDl~t--g~~~~~l~~~~-~~gh~~~V--~svafSpdg~~lasgs 522 (630)
-|.-..|..+.|.|-+ .+||. ---+.|-||.+.- -+.-+.+.... ..+..-+| ..+.|+|...+++.-.
T Consensus 53 iGqFEhV~GlsW~P~~~~~~paLLAV-QHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT 131 (671)
T PF15390_consen 53 IGQFEHVHGLSWAPPCTADTPALLAV-QHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLT 131 (671)
T ss_pred eeccceeeeeeecCcccCCCCceEEE-eccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEe
Confidence 3556679999999942 45554 5567899999852 11111111000 00111111 2567888877666532
Q ss_pred -CCCeeeeecccccccccccccCccccccEEEeC--CCCceEEeccCCCCEEEEEEcCC-CeEEEE-ECCCcEEEEeCCC
Q 006825 523 -LDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL--SDKPICSFQGHLDDVLDLSWSKS-QHLLSS-SMDKTVRLWHLSS 597 (630)
Q Consensus 523 -~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl--sgk~l~tL~GHs~~V~sLafSPd-~~LaSg-S~DgtVrIWDl~t 597 (630)
.|-.| ++++ ....++.=..-.+.|.|.+|.+| +.|+.+ +.-=.-+|||-..
T Consensus 132 ~~dvSV------------------------~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 132 ARDVSV------------------------LPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred cCceeE------------------------eeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 22222 2222 23333333345577999999999 655543 4444568999654
Q ss_pred CcE-----EEEEecCCceEEEE
Q 006825 598 KTC-----LKIFSHSDYDISLV 614 (630)
Q Consensus 598 g~~-----l~t~~H~~~V~sVa 614 (630)
... --.|.-.++|.+|.
T Consensus 188 KtL~~CsfcPVFdv~~~Icsi~ 209 (671)
T PF15390_consen 188 KTLHRCSFCPVFDVGGYICSIE 209 (671)
T ss_pred hhhhhCCcceeecCCCceEEEE
Confidence 322 12344667888877
No 382
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=76.41 E-value=27 Score=37.50 Aligned_cols=113 Identities=11% Similarity=0.029 Sum_probs=55.5
Q ss_pred CEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccc-eeee-eEecccCcCE
Q 006825 382 SIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTA-LYKC-QEIQAHNGSI 459 (630)
Q Consensus 382 ~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~-~~~v-~tL~gHt~~V 459 (630)
.-++++|.|||..+++ ...|+|++++.. +.... ...+ ..........
T Consensus 3 ~P~~~a~~pdG~l~v~------------------------------e~~G~i~~~~~~-g~~~~~v~~~~~v~~~~~~gl 51 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA------------------------------ERSGRIWVVDKD-GSLKTPVADLPEVFADGERGL 51 (331)
T ss_dssp SEEEEEEETTSCEEEE------------------------------ETTTEEEEEETT-TEECEEEEE-TTTBTSTTBSE
T ss_pred CceEEEEeCCCcEEEE------------------------------eCCceEEEEeCC-CcCcceecccccccccccCCc
Confidence 3467888888876653 335677777722 22100 0000 1123455678
Q ss_pred EEEEEccC----CCEEEEEeCC--------CcEEEEECcCC----ceeeeeecc-cc-cCcccceEEEEECCCCCEEEEe
Q 006825 460 WSIKFSLD----GRYLASAGED--------CVIHVWQVVES----ERKGELLEK-QE-DGHLNMLLLANGSPEPTSLSPK 521 (630)
Q Consensus 460 ~sVaFSpD----G~~LASgS~D--------gtIrVWDl~tg----~~~~~l~~~-~~-~gh~~~V~svafSpdg~~lasg 521 (630)
..|+|+|+ +.+.+..... ..|.-|.+..+ .....++.. .. .........++|.|||.++++.
T Consensus 52 lgia~~p~f~~n~~lYv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~ 131 (331)
T PF07995_consen 52 LGIAFHPDFASNGYLYVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSV 131 (331)
T ss_dssp EEEEE-TTCCCC-EEEEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEE
T ss_pred ccceeccccCCCCEEEEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEe
Confidence 99999994 4444443421 23444554433 112222211 11 1223345569999999888776
Q ss_pred eCCC
Q 006825 522 HLDN 525 (630)
Q Consensus 522 s~Dg 525 (630)
+..+
T Consensus 132 G~~~ 135 (331)
T PF07995_consen 132 GDGG 135 (331)
T ss_dssp B-TT
T ss_pred CCCC
Confidence 5544
No 383
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=76.38 E-value=15 Score=42.11 Aligned_cols=38 Identities=16% Similarity=0.330 Sum_probs=29.3
Q ss_pred cCEEEEEEcc----CCCEEEEEeCCCcEEEEECcCCceeeee
Q 006825 457 GSIWSIKFSL----DGRYLASAGEDCVIHVWQVVESERKGEL 494 (630)
Q Consensus 457 ~~V~sVaFSp----DG~~LASgS~DgtIrVWDl~tg~~~~~l 494 (630)
..+..++++. +..+|++-+.|++||+||+.++.++...
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 4566677776 7789999999999999999999986654
No 384
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=75.39 E-value=99 Score=31.48 Aligned_cols=218 Identities=12% Similarity=0.010 Sum_probs=107.0
Q ss_pred ceEeecCCCccEecccCCC-CceeEEecCCccCCEEEEEEcCCCCeEEeecCCC----C-----Ccc-------------
Q 006825 350 NVEEGNKDSFDLNNNGSSG-GGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER----D-----TSS------------- 406 (630)
Q Consensus 350 ~laSgS~D~tvr~vWD~~t-G~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~----d-----t~s------------- 406 (630)
.|+-|..++ +. +++... ....... +...|..++..++-+.+..-++.. + ...
T Consensus 9 ~L~vGt~~G-l~-~~~~~~~~~~~~i~---~~~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~ 83 (275)
T PF00780_consen 9 RLLVGTEDG-LY-VYDLSDPSKPTRIL---KLSSITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRSL 83 (275)
T ss_pred EEEEEECCC-EE-EEEecCCccceeEe---ecceEEEEEEecccCEEEEEcCCccEEEEchhhccccccccccccccccc
Confidence 466677776 66 666632 2222222 233488888888666555544432 0 000
Q ss_pred --ccCCcceEEEee----cCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcE
Q 006825 407 --EKGGRRSSSATD----DSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVI 480 (630)
Q Consensus 407 --~~gh~~~Vsa~~----~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtI 480 (630)
.....+.+.... .............+|.+|.+...........+++. -...+.+|+|. ++.|+.|..+ ..
T Consensus 84 ~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~-~f 159 (275)
T PF00780_consen 84 PTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSK-GF 159 (275)
T ss_pred cccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCC-ce
Confidence 111122233333 11112223333447777766543111102334443 33788999998 5667777654 47
Q ss_pred EEEECcCCceeeeeecccc-------cCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEE
Q 006825 481 HVWQVVESERKGELLEKQE-------DGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVF 553 (630)
Q Consensus 481 rVWDl~tg~~~~~l~~~~~-------~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vw 553 (630)
.+.|+.++.....+..... .....++..+... ++.++++- .+-. ...
T Consensus 160 ~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~-~~~g------------------------~fv 213 (275)
T PF00780_consen 160 YLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY-DNIG------------------------VFV 213 (275)
T ss_pred EEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe-cceE------------------------EEE
Confidence 7889887654332210000 0111223333332 34444432 1111 222
Q ss_pred eCCCCceE--EeccCCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825 554 ALSDKPIC--SFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS 605 (630)
Q Consensus 554 dlsgk~l~--tL~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~l~t~~ 605 (630)
+..|++.+ .++-. .....+++.. .||+.-.. +.|.||++.++++++++.
T Consensus 214 ~~~G~~~r~~~i~W~-~~p~~~~~~~-pyli~~~~-~~iEV~~~~~~~lvQ~i~ 264 (275)
T PF00780_consen 214 NKNGEPSRKSTIQWS-SAPQSVAYSS-PYLIAFSS-NSIEVRSLETGELVQTIP 264 (275)
T ss_pred cCCCCcCcccEEEcC-CchhEEEEEC-CEEEEECC-CEEEEEECcCCcEEEEEE
Confidence 33444433 22211 2345566544 46666555 559999999999999887
No 385
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=74.09 E-value=1.1e+02 Score=31.24 Aligned_cols=150 Identities=12% Similarity=0.050 Sum_probs=80.9
Q ss_pred CCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeee---c-
Q 006825 421 QDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELL---E- 496 (630)
Q Consensus 421 ~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~---~- 496 (630)
.+.++-|..+| +.+|+..... . ..+. -+...|..|...++-+.|+.-+ |+.+.++++..-....... .
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~--~--~~~i--~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~ 78 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPS--K--PTRI--LKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFP 78 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCc--c--ceeE--eecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccc
Confidence 34577788888 8888872211 1 1111 1333499999999877777655 5999999987654433100 0
Q ss_pred c-----cccCcccceEEEE--ECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCC-----C-CceEEe
Q 006825 497 K-----QEDGHLNMLLLAN--GSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS-----D-KPICSF 563 (630)
Q Consensus 497 ~-----~~~gh~~~V~sva--fSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdls-----g-k~l~tL 563 (630)
. ........+...+ -...+...+.......| .+|... . +.++++
T Consensus 79 ~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i-----------------------~i~~~~~~~~~f~~~~ke~ 135 (275)
T PF00780_consen 79 KSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKI-----------------------LIYEWNDPRNSFSKLLKEI 135 (275)
T ss_pred ccccccccccccCCeeEEeeccccccceEEEEEECCEE-----------------------EEEEEECCcccccceeEEE
Confidence 0 0011122233333 12233333333344455 333321 1 344454
Q ss_pred ccCCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEE
Q 006825 564 QGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIF 604 (630)
Q Consensus 564 ~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~l~t~ 604 (630)
. -...+..++|.+ +.|+.|..+ ...+.|+.++.....+
T Consensus 136 ~-lp~~~~~i~~~~-~~i~v~~~~-~f~~idl~~~~~~~l~ 173 (275)
T PF00780_consen 136 S-LPDPPSSIAFLG-NKICVGTSK-GFYLIDLNTGSPSELL 173 (275)
T ss_pred E-cCCCcEEEEEeC-CEEEEEeCC-ceEEEecCCCCceEEe
Confidence 4 336788999986 455555543 4778898877655444
No 386
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=73.35 E-value=82 Score=37.78 Aligned_cols=98 Identities=11% Similarity=0.121 Sum_probs=56.6
Q ss_pred cceEEEEECCCCCEEEEeeCCCeeeeeccccccccccccc-CccccccEEEeCCCCceEEeccCCCCEEEEEEcCC----
Q 006825 504 NMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSL-DHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS---- 578 (630)
Q Consensus 504 ~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~-d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd---- 578 (630)
-.|..|.++|+|.+++..+..+..-+....+......+.. ...+ .-+.+.+... +. ...+...|..+.|+|.
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i-~Crt~~v~~~-~~-~~~~~~~i~qv~WhP~s~~~ 161 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEI-NCRTVPVDER-FF-TSNSSLEIKQVRWHPWSESD 161 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcce-eEEEEEechh-hc-cCCCCceEEEEEEcCCCCCC
Confidence 3577899999999999888877654433332111000000 0000 0011111111 11 1245567999999984
Q ss_pred CeEEEEECCCcEEEEeCCCC-cEEEEE
Q 006825 579 QHLLSSSMDKTVRLWHLSSK-TCLKIF 604 (630)
Q Consensus 579 ~~LaSgS~DgtVrIWDl~tg-~~l~t~ 604 (630)
..|+.=..|+++|+||+... .+.+++
T Consensus 162 ~~l~vLtsdn~lR~y~~~~~~~p~~v~ 188 (717)
T PF10168_consen 162 SHLVVLTSDNTLRLYDISDPQHPWQVL 188 (717)
T ss_pred CeEEEEecCCEEEEEecCCCCCCeEEE
Confidence 68888889999999999753 344444
No 387
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=72.24 E-value=53 Score=35.28 Aligned_cols=55 Identities=22% Similarity=0.139 Sum_probs=36.5
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeee--cccccCcccceEEEEECCC
Q 006825 458 SIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELL--EKQEDGHLNMLLLANGSPE 514 (630)
Q Consensus 458 ~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~--~~~~~gh~~~V~svafSpd 514 (630)
.-+.|+|.|||++|++ -..|.|++++ ..+.....+. .............++++|+
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccc
Confidence 3578999999998876 5599999999 4444312221 1123444567889999995
No 388
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=71.89 E-value=30 Score=38.36 Aligned_cols=100 Identities=14% Similarity=0.068 Sum_probs=60.4
Q ss_pred ceEEEEECCCCCEEEEeeCCCeeeeeccccccccc--ccccCcc---------ccccEEEeCCC----------CceEEe
Q 006825 505 MLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRK--SLSLDHM---------VVPETVFALSD----------KPICSF 563 (630)
Q Consensus 505 ~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~--s~s~d~~---------i~~~~Vwdlsg----------k~l~tL 563 (630)
.|..+.|.++..-++.+...|.|-+++.+...... ....... -.+..+-+++. .++.-+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 46788999998888999899988777766532221 1111100 01234444421 244455
Q ss_pred ccCCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEE
Q 006825 564 QGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIF 604 (630)
Q Consensus 564 ~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~l~t~ 604 (630)
....++|++++.|.=+++|.|..+|++.|.|++....++.-
T Consensus 83 ~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~ 123 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNE 123 (395)
T ss_dssp ---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred eccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeec
Confidence 66789999999973399999999999999999877776653
No 389
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=71.70 E-value=52 Score=36.32 Aligned_cols=214 Identities=10% Similarity=-0.002 Sum_probs=86.7
Q ss_pred cCCCCceeEEecC----CccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecC--CcEEEEEeC
Q 006825 365 GSSGGGMKSKKKG----SWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQE--RVRVRQYGK 438 (630)
Q Consensus 365 D~~tG~~~~~lk~----gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~--Dg~VriWd~ 438 (630)
|..||..+.+|.. .|.-....=+|.+||++|+ +.+.. ...+.+.|+
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kll----------------------------F~s~~dg~~nly~lDL 67 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLL----------------------------FASDFDGNRNLYLLDL 67 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEE----------------------------EEE-TTSS-EEEEEET
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEE----------------------------EEeccCCCcceEEEEc
Confidence 7788888887762 1222223345666776554 33332 335677788
Q ss_pred CCCcccceeeeeEecccCc-CEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEE--CCCC
Q 006825 439 SCKDLTALYKCQEIQAHNG-SIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANG--SPEP 515 (630)
Q Consensus 439 ~~~el~~~~~v~tL~gHt~-~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svaf--Spdg 515 (630)
.+++. ..|..+.+ ......++|+.+.|+-......|+--|+.+.+..... .-....+-...| ..|+
T Consensus 68 ~t~~i------~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy-----~~p~~~~g~gt~v~n~d~ 136 (386)
T PF14583_consen 68 ATGEI------TQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVY-----EVPDDWKGYGTWVANSDC 136 (386)
T ss_dssp TT-EE------EE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEE-----E--TTEEEEEEEEE-TTS
T ss_pred ccCEE------EECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEE-----ECCcccccccceeeCCCc
Confidence 77753 33433332 2334667788888776666678888899887643221 222222322222 3355
Q ss_pred CEEEEeeCCCeeeeeccccccc----ccccccCccccccEEEe--CCCCceEEeccCCCCEEEEEEcCC--CeEEEEE--
Q 006825 516 TSLSPKHLDNHLEKKRRGRSIN----RKSLSLDHMVVPETVFA--LSDKPICSFQGHLDDVLDLSWSKS--QHLLSSS-- 585 (630)
Q Consensus 516 ~~lasgs~Dg~I~i~~~~~~~~----~~s~s~d~~i~~~~Vwd--lsgk~l~tL~GHs~~V~sLafSPd--~~LaSgS-- 585 (630)
..++..-....- +....... .....+ ..+|+. +....+.++..-...+..+.|+|. .+|+-|-
T Consensus 137 t~~~g~e~~~~d--~~~l~~~~~f~e~~~a~p-----~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEG 209 (386)
T PF14583_consen 137 TKLVGIEISRED--WKPLTKWKGFREFYEARP-----HCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEG 209 (386)
T ss_dssp SEEEEEEEEGGG-------SHHHHHHHHHC--------EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S
T ss_pred cEEEEEEEeehh--ccCccccHHHHHHHhhCC-----CceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccC
Confidence 554433111000 00000000 000011 113333 333334444445667889999997 5555543
Q ss_pred -CCC-cEEEEeCCC-CcEEEEEe-cCCceEEEE---cCCCcEEEEe
Q 006825 586 -MDK-TVRLWHLSS-KTCLKIFS-HSDYDISLV---DRLMLRFAYG 624 (630)
Q Consensus 586 -~Dg-tVrIWDl~t-g~~l~t~~-H~~~V~sVa---s~~~~~lAsg 624 (630)
.|. .-|||-+.+ |...+.+. |.....+-. .+++..+.+.
T Consensus 210 pw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~ 255 (386)
T PF14583_consen 210 PWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYD 255 (386)
T ss_dssp -TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEE
T ss_pred CcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEE
Confidence 244 358887654 44444443 433322222 6666666554
No 390
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=71.64 E-value=13 Score=28.01 Aligned_cols=31 Identities=16% Similarity=0.046 Sum_probs=25.0
Q ss_pred CCEEEEEEcCC-C---eEEEEECCCcEEEEeCCCC
Q 006825 568 DDVLDLSWSKS-Q---HLLSSSMDKTVRLWHLSSK 598 (630)
Q Consensus 568 ~~V~sLafSPd-~---~LaSgS~DgtVrIWDl~tg 598 (630)
+.|.++.|+|. . +|+-+-.-+.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 46889999986 4 6777777799999999963
No 391
>PHA02713 hypothetical protein; Provisional
Probab=70.29 E-value=1e+02 Score=35.68 Aligned_cols=29 Identities=3% Similarity=0.053 Sum_probs=22.4
Q ss_pred CCCeEEEEECCC--cEEEEeCCCCcEEEEEe
Q 006825 577 KSQHLLSSSMDK--TVRLWHLSSKTCLKIFS 605 (630)
Q Consensus 577 Pd~~LaSgS~Dg--tVrIWDl~tg~~l~t~~ 605 (630)
.+.+.+.|+.|+ +|-.+|..+.+......
T Consensus 512 ~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~ 542 (557)
T PHA02713 512 DNTIMMLHCYESYMLQDTFNVYTYEWNHICH 542 (557)
T ss_pred CCEEEEEeeecceeehhhcCcccccccchhh
Confidence 347888999888 88889998887665544
No 392
>PRK10115 protease 2; Provisional
Probab=69.71 E-value=2.5e+02 Score=33.55 Aligned_cols=34 Identities=18% Similarity=0.288 Sum_probs=28.7
Q ss_pred eeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcE
Q 006825 261 MSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKE 303 (630)
Q Consensus 261 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~ 303 (630)
+.+||||++|+-+.| ..++|...++|+++++|+.
T Consensus 132 ~~~Spdg~~la~~~d---------~~G~E~~~l~v~d~~tg~~ 165 (686)
T PRK10115 132 MAITPDNTIMALAED---------FLSRRQYGIRFRNLETGNW 165 (686)
T ss_pred EEECCCCCEEEEEec---------CCCcEEEEEEEEECCCCCC
Confidence 688999999966653 7789999999999998863
No 393
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=69.07 E-value=1.8e+02 Score=31.79 Aligned_cols=143 Identities=10% Similarity=0.094 Sum_probs=84.0
Q ss_pred EecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeC---CCcEEEEECcCCceeeeeecccccCc
Q 006825 426 HGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE---DCVIHVWQVVESERKGELLEKQEDGH 502 (630)
Q Consensus 426 Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~---DgtIrVWDl~tg~~~~~l~~~~~~gh 502 (630)
....+..|.+.|..+..... ....|. .-..++|+|+++.+..+.. ++++-+-|..+........ .+.
T Consensus 91 ~~~~~~~v~vid~~~~~~~~----~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~----vG~ 160 (381)
T COG3391 91 TTGDSNTVSVIDTATNTVLG----SIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIP----VGN 160 (381)
T ss_pred ecCCCCeEEEEcCcccceee----Eeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEe----cCC
Confidence 33345678888855443211 111222 5568999999987666654 6888888888887777642 222
Q ss_pred ccceEEEEECCCCCEEEEe-eCCCeeeeecccccccccccccCccccccEEEeCCCCceEE-----eccCCCCEEEEEEc
Q 006825 503 LNMLLLANGSPEPTSLSPK-HLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICS-----FQGHLDDVLDLSWS 576 (630)
Q Consensus 503 ~~~V~svafSpdg~~lasg-s~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~t-----L~GHs~~V~sLafS 576 (630)
.+ ..+++.|+|..+... ..++.| .+++..+..+.. ..+-...-..+.+.
T Consensus 161 -~P-~~~a~~p~g~~vyv~~~~~~~v-----------------------~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~ 215 (381)
T COG3391 161 -TP-TGVAVDPDGNKVYVTNSDDNTV-----------------------SVIDTSGNSVVRGSVGSLVGVGTGPAGIAVD 215 (381)
T ss_pred -Cc-ceEEECCCCCeEEEEecCCCeE-----------------------EEEeCCCcceeccccccccccCCCCceEEEC
Confidence 22 789999999855554 456666 344433332221 01111122567788
Q ss_pred CC-CeE-EEEEC--CCcEEEEeCCCCcEEEE
Q 006825 577 KS-QHL-LSSSM--DKTVRLWHLSSKTCLKI 603 (630)
Q Consensus 577 Pd-~~L-aSgS~--DgtVrIWDl~tg~~l~t 603 (630)
|+ .++ ++--. |++|.+-|..++.....
T Consensus 216 ~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~ 246 (381)
T COG3391 216 PDGNRVYVANDGSGSNNVLKIDTATGNVTAT 246 (381)
T ss_pred CCCCEEEEEeccCCCceEEEEeCCCceEEEe
Confidence 87 433 33222 36888888888777665
No 394
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.79 E-value=1.4e+02 Score=33.84 Aligned_cols=118 Identities=15% Similarity=0.177 Sum_probs=68.2
Q ss_pred cCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccc
Q 006825 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGR 534 (630)
Q Consensus 455 Ht~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~ 534 (630)
..++|.+|.||+|.+.||.--.|++|.+.+....+...++... .......|....|+.. .-+|.-...|.
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~-ck~k~~~IlGF~W~~s-~e~A~i~~~G~-------- 134 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQE-CKTKNANILGFCWTSS-TEIAFITDQGI-------- 134 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHH-hccCcceeEEEEEecC-eeEEEEecCCe--------
Confidence 4569999999999999999999999999998544433332100 1122234666666654 22333322221
Q ss_pred cccccccccCccccccEEEeC--CCCceEEeccCCCCEEEEEEcCC-Ce--EEEEECCCcEEEEeCCCC
Q 006825 535 SINRKSLSLDHMVVPETVFAL--SDKPICSFQGHLDDVLDLSWSKS-QH--LLSSSMDKTVRLWHLSSK 598 (630)
Q Consensus 535 ~~~~~s~s~d~~i~~~~Vwdl--sgk~l~tL~GHs~~V~sLafSPd-~~--LaSgS~DgtVrIWDl~tg 598 (630)
.+|.. ....++..+.|.-.|+--.|.++ .. |+|+=.-+++.=+.++++
T Consensus 135 ----------------e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 135 ----------------EFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred ----------------EEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 23333 22344455667777888888887 32 333324445444544444
No 395
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=65.11 E-value=25 Score=39.22 Aligned_cols=92 Identities=17% Similarity=0.142 Sum_probs=53.6
Q ss_pred EEEEccCCCEEEEEeCCCcEEE---EECcC-C--ceeeeeecccccCcc--cceEEEE---E--------CCCCCEEEEe
Q 006825 461 SIKFSLDGRYLASAGEDCVIHV---WQVVE-S--ERKGELLEKQEDGHL--NMLLLAN---G--------SPEPTSLSPK 521 (630)
Q Consensus 461 sVaFSpDG~~LASgS~DgtIrV---WDl~t-g--~~~~~l~~~~~~gh~--~~V~sva---f--------Spdg~~lasg 521 (630)
.++.+|++.+||-|..++.+-+ |+... + .....+.......+. ..|+++. + .+|...++.|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4678999999999988887776 75421 2 111221111111121 3455443 3 2557889999
Q ss_pred eCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEE
Q 006825 522 HLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSW 575 (630)
Q Consensus 522 s~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLaf 575 (630)
..+|.| ++|..+|.++..-.-|..+|..|.+
T Consensus 86 ~ssG~v-----------------------rfyte~G~LL~~Q~~h~~pV~~ik~ 116 (415)
T PF14655_consen 86 TSSGYV-----------------------RFYTENGVLLLSQLLHEEPVLKIKC 116 (415)
T ss_pred ecccEE-----------------------EEEeccchHHHHHhcCccceEEEEe
Confidence 999999 5555555555444445555555554
No 396
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=64.10 E-value=76 Score=36.38 Aligned_cols=96 Identities=16% Similarity=0.127 Sum_probs=55.4
Q ss_pred cceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCc-cccccEEEeCCCCceEEeccCCCCEEEEEEcCC----
Q 006825 504 NMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDH-MVVPETVFALSDKPICSFQGHLDDVLDLSWSKS---- 578 (630)
Q Consensus 504 ~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~-~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd---- 578 (630)
-.|..+..++.|..++-.+.+|.+-+....+......+ -|+ ..+.-+++.+. ..+.+-. ..-.+..++|+|+
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~-eDgk~~v~CRt~~i~-~~~ftss-~~ltl~Qa~WHP~S~~D 180 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEF-EDGKSTVNCRTTPVA-ERFFTSS-TSLTLKQAAWHPSSILD 180 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCcccee-cCCCceEEEEeeccc-ceeeccC-CceeeeeccccCCccCC
Confidence 34667888999999998888987755543331111111 111 01111222221 1111111 2234678899996
Q ss_pred CeEEEEECCCcEEEEeCCCCcEEE
Q 006825 579 QHLLSSSMDKTVRLWHLSSKTCLK 602 (630)
Q Consensus 579 ~~LaSgS~DgtVrIWDl~tg~~l~ 602 (630)
..|+--+.|.+|||||+..-+.++
T Consensus 181 ~hL~iL~sdnviRiy~lS~~tely 204 (741)
T KOG4460|consen 181 PHLVLLTSDNVIRIYSLSEPTELY 204 (741)
T ss_pred ceEEEEecCcEEEEEecCCcchhh
Confidence 578888889999999998765543
No 397
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=63.76 E-value=1.4e+02 Score=35.13 Aligned_cols=75 Identities=19% Similarity=0.207 Sum_probs=46.8
Q ss_pred EEEeCCCCceE---EeccCCCCEEEEEEc--CC-CeEEEEECCCcEEEEeCC---------CCcEEEEEe---cC-CceE
Q 006825 551 TVFALSDKPIC---SFQGHLDDVLDLSWS--KS-QHLLSSSMDKTVRLWHLS---------SKTCLKIFS---HS-DYDI 611 (630)
Q Consensus 551 ~Vwdlsgk~l~---tL~GHs~~V~sLafS--Pd-~~LaSgS~DgtVrIWDl~---------tg~~l~t~~---H~-~~V~ 611 (630)
.||+..+..+. +| ...+.|.++.|. |+ +.+++.+..+.|.|+--. +-..++.+. |+ .+|.
T Consensus 54 tIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Ig 132 (631)
T PF12234_consen 54 TIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIG 132 (631)
T ss_pred EEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCcc
Confidence 78888443321 22 346789999996 56 889999999999998531 223555553 44 5666
Q ss_pred EEE-cCCCc-EEEEecc
Q 006825 612 SLV-DRLML-RFAYGAF 626 (630)
Q Consensus 612 sVa-s~~~~-~lAsgs~ 626 (630)
+.. -+++. .+++|..
T Consensus 133 ds~Wl~~G~LvV~sGNq 149 (631)
T PF12234_consen 133 DSIWLKDGTLVVGSGNQ 149 (631)
T ss_pred ceeEecCCeEEEEeCCE
Confidence 666 33333 3445443
No 398
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.90 E-value=1.8e+02 Score=31.21 Aligned_cols=130 Identities=17% Similarity=0.148 Sum_probs=74.9
Q ss_pred EEEEccC-CCEEEEEeCCCc-EEEEECcCCceeeeeec---ccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccccc
Q 006825 461 SIKFSLD-GRYLASAGEDCV-IHVWQVVESERKGELLE---KQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRS 535 (630)
Q Consensus 461 sVaFSpD-G~~LASgS~Dgt-IrVWDl~tg~~~~~l~~---~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~ 535 (630)
.|+|+|- .+-++-+=.=|+ ..++|..+.+.+..+.. ..+.|| -.|+|||.+|...-.|.. .++
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGH------Gvfs~dG~~LYATEndfd-----~~r- 139 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGH------GVFSPDGRLLYATENDFD-----PNR- 139 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecc------cccCCCCcEEEeecCCCC-----CCC-
Confidence 4777773 445555655565 56789888777666531 122333 368999999887644321 011
Q ss_pred ccccccccCccccccEEEeCC--CCceEEeccCCCCEEEEEEcCC-CeEEEE------------------ECCCcEEEEe
Q 006825 536 INRKSLSLDHMVVPETVFALS--DKPICSFQGHLDDVLDLSWSKS-QHLLSS------------------SMDKTVRLWH 594 (630)
Q Consensus 536 ~~~~s~s~d~~i~~~~Vwdls--gk~l~tL~GHs~~V~sLafSPd-~~LaSg------------------S~DgtVrIWD 594 (630)
+.+ -|++.. -+.+.++.+|.-.-..+.|.+| .+|+.+ ++.-.+-+-|
T Consensus 140 ---------GVi---GvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld 207 (366)
T COG3490 140 ---------GVI---GVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLD 207 (366)
T ss_pred ---------ceE---EEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEe
Confidence 011 566663 2456667777777788888888 555443 2223455566
Q ss_pred CCCCcEEEEEe-----cCCceEEEE
Q 006825 595 LSSKTCLKIFS-----HSDYDISLV 614 (630)
Q Consensus 595 l~tg~~l~t~~-----H~~~V~sVa 614 (630)
..+|.++.... +.-.|.-++
T Consensus 208 ~atG~liekh~Lp~~l~~lSiRHld 232 (366)
T COG3490 208 AATGNLIEKHTLPASLRQLSIRHLD 232 (366)
T ss_pred ccccchhhhccCchhhhhcceeeee
Confidence 66676654332 444455555
No 399
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=62.24 E-value=2.1e+02 Score=30.11 Aligned_cols=94 Identities=13% Similarity=0.009 Sum_probs=57.0
Q ss_pred cEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCce-eeeeecccccCcccceEEE
Q 006825 431 VRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESER-KGELLEKQEDGHLNMLLLA 509 (630)
Q Consensus 431 g~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~-~~~l~~~~~~gh~~~V~sv 509 (630)
.+|.+|++...+ .+.....+..+. .|.++... +.+|+.|..-+.|.++....... +..+ . .......+.++
T Consensus 107 ~~l~v~~l~~~~--~l~~~~~~~~~~-~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~v-a--~d~~~~~v~~~ 178 (321)
T PF03178_consen 107 NKLYVYDLDNSK--TLLKKAFYDSPF-YITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILV-A--RDYQPRWVTAA 178 (321)
T ss_dssp TEEEEEEEETTS--SEEEEEEE-BSS-SEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEE-E--EESS-BEEEEE
T ss_pred CEEEEEEccCcc--cchhhheecceE-EEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEE-E--ecCCCccEEEE
Confidence 578888876665 122333333333 66666654 66899998888898886554222 2222 1 12334567888
Q ss_pred EECCCCCEEEEeeCCCeeeeecc
Q 006825 510 NGSPEPTSLSPKHLDNHLEKKRR 532 (630)
Q Consensus 510 afSpdg~~lasgs~Dg~I~i~~~ 532 (630)
.|-+++..++.+..++.+.+...
T Consensus 179 ~~l~d~~~~i~~D~~gnl~~l~~ 201 (321)
T PF03178_consen 179 EFLVDEDTIIVGDKDGNLFVLRY 201 (321)
T ss_dssp EEE-SSSEEEEEETTSEEEEEEE
T ss_pred EEecCCcEEEEEcCCCeEEEEEE
Confidence 88866678888889998855443
No 400
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=62.03 E-value=2.4e+02 Score=30.71 Aligned_cols=111 Identities=14% Similarity=0.012 Sum_probs=60.8
Q ss_pred ecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEE
Q 006825 354 GNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRV 433 (630)
Q Consensus 354 gS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~V 433 (630)
|+...+++ +.|+++|+.+.... .... ...++|.+||+.+.-...+.... .- .......|
T Consensus 146 G~e~~~l~-v~Dl~tg~~l~d~i-~~~~-~~~~~W~~d~~~~~y~~~~~~~~-----------------~~-~~~~~~~v 204 (414)
T PF02897_consen 146 GSEWYTLR-VFDLETGKFLPDGI-ENPK-FSSVSWSDDGKGFFYTRFDEDQR-----------------TS-DSGYPRQV 204 (414)
T ss_dssp TSSEEEEE-EEETTTTEEEEEEE-EEEE-SEEEEECTTSSEEEEEECSTTTS-----------------S--CCGCCEEE
T ss_pred CCceEEEE-EEECCCCcCcCCcc-cccc-cceEEEeCCCCEEEEEEeCcccc-----------------cc-cCCCCcEE
Confidence 34445678 99999997765432 1111 12389999988765443332000 00 12334568
Q ss_pred EEEeCCCCcccceeeeeEecccCc--CEEEEEEccCCCEEEEEe-CCC---cEEEEECcCC
Q 006825 434 RQYGKSCKDLTALYKCQEIQAHNG--SIWSIKFSLDGRYLASAG-EDC---VIHVWQVVES 488 (630)
Q Consensus 434 riWd~~~~el~~~~~v~tL~gHt~--~V~sVaFSpDG~~LASgS-~Dg---tIrVWDl~tg 488 (630)
+.|.+.+..-.. ...+.+... ....+..++|+++|+..+ ... .|.+-++..+
T Consensus 205 ~~~~~gt~~~~d---~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 205 YRHKLGTPQSED---ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp EEEETTS-GGG----EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred EEEECCCChHhC---eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 888887653221 122333332 367889999999877543 222 3666677654
No 401
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=61.88 E-value=2.6e+02 Score=31.04 Aligned_cols=38 Identities=26% Similarity=0.296 Sum_probs=30.3
Q ss_pred CcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeee
Q 006825 456 NGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGE 493 (630)
Q Consensus 456 t~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~ 493 (630)
.++|..|++||+|++||--..+|++.|....-.+...+
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e 253 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCE 253 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEE
Confidence 36899999999999999999999998887644444333
No 402
>PRK10115 protease 2; Provisional
Probab=61.42 E-value=88 Score=37.24 Aligned_cols=78 Identities=8% Similarity=-0.006 Sum_probs=49.6
Q ss_pred CCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEE
Q 006825 381 KSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIW 460 (630)
Q Consensus 381 ~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~ 460 (630)
-.+..+.+||||++++-+.+ ..|.....|++.++.+++. ....+.+ . -.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d------------------------~~G~E~~~l~v~d~~tg~~----l~~~i~~-~--~~ 175 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAED------------------------FLSRRQYGIRFRNLETGNW----YPELLDN-V--EP 175 (686)
T ss_pred EEEeEEEECCCCCEEEEEec------------------------CCCcEEEEEEEEECCCCCC----CCccccC-c--ce
Confidence 34566888999998875422 2355666788999876642 1112222 1 15
Q ss_pred EEEEccCCCEEEEEeCC------CcEEEEECcCCc
Q 006825 461 SIKFSLDGRYLASAGED------CVIHVWQVVESE 489 (630)
Q Consensus 461 sVaFSpDG~~LASgS~D------gtIrVWDl~tg~ 489 (630)
.++|.+|++.|+-...+ ..|.+|++.++.
T Consensus 176 ~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~ 210 (686)
T PRK10115 176 SFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPA 210 (686)
T ss_pred EEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCCh
Confidence 69999999866655433 357778887773
No 403
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=60.15 E-value=3.3e+02 Score=31.72 Aligned_cols=86 Identities=13% Similarity=0.067 Sum_probs=43.6
Q ss_pred cEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCc-----EEEEECcCCceeeeeecccccCcccc
Q 006825 431 VRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCV-----IHVWQVVESERKGELLEKQEDGHLNM 505 (630)
Q Consensus 431 g~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~Dgt-----IrVWDl~tg~~~~~l~~~~~~gh~~~ 505 (630)
.++..||..+.+.... ..+...........+ +|.+.|.||.||. |-.||..+.+-... ......
T Consensus 349 ~~ve~YD~~~~~W~~~---a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~v------a~m~~~ 417 (571)
T KOG4441|consen 349 SSVERYDPRTNQWTPV---APMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPV------APMLTR 417 (571)
T ss_pred ceEEEecCCCCceecc---CCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCccccc------CCCCcc
Confidence 3577888777664332 222222222222222 8889999999964 55677655432111 111111
Q ss_pred eEE-EEECCCCCEEEEeeCCCee
Q 006825 506 LLL-ANGSPEPTSLSPKHLDNHL 527 (630)
Q Consensus 506 V~s-vafSpdg~~lasgs~Dg~I 527 (630)
... ....-+|++.+.|+.++.-
T Consensus 418 r~~~gv~~~~g~iYi~GG~~~~~ 440 (571)
T KOG4441|consen 418 RSGHGVAVLGGKLYIIGGGDGSS 440 (571)
T ss_pred eeeeEEEEECCEEEEEcCcCCCc
Confidence 111 1112267888888877643
No 404
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.74 E-value=1.3e+02 Score=32.16 Aligned_cols=72 Identities=14% Similarity=0.019 Sum_probs=51.4
Q ss_pred ecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCee
Q 006825 452 IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHL 527 (630)
Q Consensus 452 L~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I 527 (630)
+.|-+..|.++.|+|+.+.|++......-.||=..+|+.++.+.. .+- .-.-.+.+...++++++-=.+..+
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL---~g~-~DpE~Ieyig~n~fvi~dER~~~l 152 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPL---TGF-SDPETIEYIGGNQFVIVDERDRAL 152 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecc---ccc-CChhHeEEecCCEEEEEehhcceE
Confidence 456666799999999999999998888888998888988888642 221 122345566666666666555555
No 405
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=59.24 E-value=3.4e+02 Score=34.76 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=17.9
Q ss_pred ecccCcCEEEEEEccCCCEEEE
Q 006825 452 IQAHNGSIWSIKFSLDGRYLAS 473 (630)
Q Consensus 452 L~gHt~~V~sVaFSpDG~~LAS 473 (630)
-.+|-..+.+++.+|||...+.
T Consensus 657 t~A~lnsp~alaVsPdg~v~IA 678 (1899)
T KOG4659|consen 657 TQAKLNSPYALAVSPDGDVIIA 678 (1899)
T ss_pred hccccCCcceEEECCCCcEEEe
Confidence 3568889999999999986654
No 406
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=57.48 E-value=54 Score=33.22 Aligned_cols=67 Identities=7% Similarity=0.068 Sum_probs=45.9
Q ss_pred EccCCCEEEEEeCCCcEEEEECcCCceeeeee-ccc-cc-------CcccceEEEEECCCCCEEEEeeCCCeeeeec
Q 006825 464 FSLDGRYLASAGEDCVIHVWQVVESERKGELL-EKQ-ED-------GHLNMLLLANGSPEPTSLSPKHLDNHLEKKR 531 (630)
Q Consensus 464 FSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~-~~~-~~-------gh~~~V~svafSpdg~~lasgs~Dg~I~i~~ 531 (630)
+...+.+|+.-..+|.+++||+.+++.+..-. ..+ .. .....|..+.++.+|..+++-+. +....|.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn-g~~y~y~ 93 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN-GDSYSYS 93 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC-CCEEEec
Confidence 44578899999999999999999887654421 111 11 34566788888888888877644 4444443
No 407
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=56.56 E-value=3.4e+02 Score=30.77 Aligned_cols=19 Identities=5% Similarity=-0.337 Sum_probs=14.2
Q ss_pred eEEEEECCCCCEEEEeeCC
Q 006825 506 LLLANGSPEPTSLSPKHLD 524 (630)
Q Consensus 506 V~svafSpdg~~lasgs~D 524 (630)
-..|+|.|||.++++.+..
T Consensus 148 GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 148 GGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CceEEECCCCcEEEEECCC
Confidence 3467899999988876554
No 408
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=56.48 E-value=44 Score=41.40 Aligned_cols=100 Identities=8% Similarity=-0.163 Sum_probs=60.5
Q ss_pred EEecCCcEEEEEeCCCCcccceeeeeEeccc------CcCEEEEEEccCC-CEEEEEeCCCcEEEEECcCCceeeeeecc
Q 006825 425 FHGQERVRVRQYGKSCKDLTALYKCQEIQAH------NGSIWSIKFSLDG-RYLASAGEDCVIHVWQVVESERKGELLEK 497 (630)
Q Consensus 425 ~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gH------t~~V~sVaFSpDG-~~LASgS~DgtIrVWDl~tg~~~~~l~~~ 497 (630)
.....+.-|..||+..-..........|.-| -.-+.++.|+|.- -..|....|+.|+|..+.......+-
T Consensus 118 ~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s--- 194 (1405)
T KOG3630|consen 118 VSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTS--- 194 (1405)
T ss_pred EEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcc---
Confidence 3344455678888753222111111112222 2345678888842 23566788999999887543322221
Q ss_pred cccCcccceEEEEECCCCCEEEEeeCCCeeee
Q 006825 498 QEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529 (630)
Q Consensus 498 ~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i 529 (630)
......+++++|+|.|+.++.|-..|++..
T Consensus 195 --~p~t~~~Tav~WSprGKQl~iG~nnGt~vQ 224 (1405)
T KOG3630|consen 195 --FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQ 224 (1405)
T ss_pred --cCcccceeeEEeccccceeeEecCCCeEEE
Confidence 123456789999999999999999998843
No 409
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=56.36 E-value=2.6e+02 Score=29.36 Aligned_cols=118 Identities=10% Similarity=-0.023 Sum_probs=65.1
Q ss_pred CEEEEEEccCCCEEEEEeCCC--cEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccccc
Q 006825 458 SIWSIKFSLDGRYLASAGEDC--VIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRS 535 (630)
Q Consensus 458 ~V~sVaFSpDG~~LASgS~Dg--tIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~ 535 (630)
-...+.|..+|.++-|.|.-| .|+.+|+.+++....... .. ...--.++...+ +++.-.-..+..
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l---~~-~~FgEGit~~~d-~l~qLTWk~~~~-------- 112 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPL---PP-RYFGEGITILGD-KLYQLTWKEGTG-------- 112 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE----TT-T--EEEEEEETT-EEEEEESSSSEE--------
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEEC---Cc-cccceeEEEECC-EEEEEEecCCeE--------
Confidence 357788888999999999887 699999999987655321 11 001112222222 111111122222
Q ss_pred ccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825 536 INRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS 605 (630)
Q Consensus 536 ~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~l~t~~ 605 (630)
.+|+. +-+.+.++.- ...=+.|+.. .+.|+..-....|+++|..+-+.++++.
T Consensus 113 ---------------f~yd~~tl~~~~~~~y-~~EGWGLt~d-g~~Li~SDGS~~L~~~dP~~f~~~~~i~ 166 (264)
T PF05096_consen 113 ---------------FVYDPNTLKKIGTFPY-PGEGWGLTSD-GKRLIMSDGSSRLYFLDPETFKEVRTIQ 166 (264)
T ss_dssp ---------------EEEETTTTEEEEEEE--SSS--EEEEC-SSCEEEE-SSSEEEEE-TTT-SEEEEEE
T ss_pred ---------------EEEccccceEEEEEec-CCcceEEEcC-CCEEEEECCccceEEECCcccceEEEEE
Confidence 56666 4556666542 2344566632 2556655557789999998877777665
No 410
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=56.26 E-value=1.5e+02 Score=30.65 Aligned_cols=68 Identities=13% Similarity=0.113 Sum_probs=36.6
Q ss_pred EEEEEccCCCEEEEEeCCC-cEEEEECcCC-ceeee--eecccc-cCcccceEEEEECCCCCEEEEeeCCCee
Q 006825 460 WSIKFSLDGRYLASAGEDC-VIHVWQVVES-ERKGE--LLEKQE-DGHLNMLLLANGSPEPTSLSPKHLDNHL 527 (630)
Q Consensus 460 ~sVaFSpDG~~LASgS~Dg-tIrVWDl~tg-~~~~~--l~~~~~-~gh~~~V~svafSpdg~~lasgs~Dg~I 527 (630)
-++..-+||+.|+.||... +.-+|.-... ..... ++.... ......--.+-..|+|++++.+..+..|
T Consensus 121 pT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i 193 (243)
T PF07250_consen 121 PTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSII 193 (243)
T ss_pred ccceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcEE
Confidence 3455567999999988774 3455554221 11111 110000 0111222356678999999998766644
No 411
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=54.87 E-value=81 Score=35.27 Aligned_cols=47 Identities=15% Similarity=-0.048 Sum_probs=39.2
Q ss_pred eeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeee
Q 006825 448 KCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGEL 494 (630)
Q Consensus 448 ~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l 494 (630)
+...|......+.+|+.+|++++.|....=|.|.|+|+.++..++.+
T Consensus 299 ~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmW 345 (415)
T PF14655_consen 299 MRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMW 345 (415)
T ss_pred eEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhh
Confidence 44556667778999999999999998877799999999998877764
No 412
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=53.83 E-value=1.2e+02 Score=36.33 Aligned_cols=114 Identities=12% Similarity=0.080 Sum_probs=69.9
Q ss_pred EEEEEEcc--CCCEEEEEeCCCcEEEEECcCCc-----------e-eeeeeccc--ccCcccceEEEEEC--CCCCEEEE
Q 006825 459 IWSIKFSL--DGRYLASAGEDCVIHVWQVVESE-----------R-KGELLEKQ--EDGHLNMLLLANGS--PEPTSLSP 520 (630)
Q Consensus 459 V~sVaFSp--DG~~LASgS~DgtIrVWDl~tg~-----------~-~~~l~~~~--~~gh~~~V~svafS--pdg~~las 520 (630)
|+-|...- +...|+.|..||.|.+|-+.+-. . .......+ .......++.++++ ...++||.
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAV 182 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAV 182 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEE
Confidence 55554443 55689999999999999763210 0 00000000 11223467889988 77888888
Q ss_pred eeCCCeeeeecccccccccccccCccccccEEEeCC---CCc-eEEeccCCCCEEEEEEcCC----C---eEEEEECCCc
Q 006825 521 KHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS---DKP-ICSFQGHLDDVLDLSWSKS----Q---HLLSSSMDKT 589 (630)
Q Consensus 521 gs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdls---gk~-l~tL~GHs~~V~sLafSPd----~---~LaSgS~Dgt 589 (630)
++....| .||... .+. ...-..|..-|-+|+|-++ . +|++++-.|.
T Consensus 183 SsNs~~V-----------------------TVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~ 239 (717)
T PF08728_consen 183 SSNSQEV-----------------------TVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGE 239 (717)
T ss_pred ecCCceE-----------------------EEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCc
Confidence 8777777 444431 111 1111125567899999875 2 6788999999
Q ss_pred EEEEeC
Q 006825 590 VRLWHL 595 (630)
Q Consensus 590 VrIWDl 595 (630)
+-+|++
T Consensus 240 v~~~~I 245 (717)
T PF08728_consen 240 VWTFKI 245 (717)
T ss_pred EEEEEE
Confidence 988887
No 413
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=53.34 E-value=5.3e+02 Score=32.01 Aligned_cols=207 Identities=10% Similarity=0.030 Sum_probs=0.0
Q ss_pred cEecccCCCCceeEEecCCccCCEEEEE---EcCC-CCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCC----c
Q 006825 360 DLNNNGSSGGGMKSKKKGSWFKSIRTVA---SSVT-GHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQER----V 431 (630)
Q Consensus 360 vr~vWD~~tG~~~~~lk~gH~~~V~sVA---fSpd-G~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~D----g 431 (630)
++ +.|-+|-+.+.-.+..-...+.++. |..| +.+++-| .+++-..+. |
T Consensus 752 l~-vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVG-----------------------T~~v~Pde~ep~~G 807 (1096)
T KOG1897|consen 752 LR-VLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVG-----------------------TGLVYPDENEPVNG 807 (1096)
T ss_pred EE-EecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEE-----------------------EEeeccCCCCcccc
Q ss_pred EEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEE
Q 006825 432 RVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANG 511 (630)
Q Consensus 432 ~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svaf 511 (630)
+|.++.... ...+..+++.+-......=+.| +|++||.-+. .|+++++.+.+.++. ...+...+..+..
T Consensus 808 RIivfe~~e--~~~L~~v~e~~v~Gav~aL~~f--ngkllA~In~--~vrLye~t~~~eLr~-----e~~~~~~~~aL~l 876 (1096)
T KOG1897|consen 808 RIIVFEFEE--LNSLELVAETVVKGAVYALVEF--NGKLLAGINQ--SVRLYEWTTERELRI-----ECNISNPIIALDL 876 (1096)
T ss_pred eEEEEEEec--CCceeeeeeeeeccceeehhhh--CCeEEEecCc--EEEEEEccccceehh-----hhcccCCeEEEEE
Q ss_pred CCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCc--eEEecc--CCCCEEEEEEcCCCeEEEEECC
Q 006825 512 SPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKP--ICSFQG--HLDDVLDLSWSKSQHLLSSSMD 587 (630)
Q Consensus 512 Spdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~--l~tL~G--Hs~~V~sLafSPd~~LaSgS~D 587 (630)
.-.+..++.|---+.+ .+-...+.. +..+.- |..+++++.+-.+..++-+-.+
T Consensus 877 ~v~gdeI~VgDlm~Si-----------------------tll~y~~~eg~f~evArD~~p~Wmtaveil~~d~ylgae~~ 933 (1096)
T KOG1897|consen 877 QVKGDEIAVGDLMRSI-----------------------TLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYLGAENS 933 (1096)
T ss_pred EecCcEEEEeeccceE-----------------------EEEEEeccCCceEEeehhhCccceeeEEEecCceEEeeccc
Q ss_pred CcEEEEeCCC-------------------CcEEEEEecCCceEEEE---cCCCcEEEEe
Q 006825 588 KTVRLWHLSS-------------------KTCLKIFSHSDYDISLV---DRLMLRFAYG 624 (630)
Q Consensus 588 gtVrIWDl~t-------------------g~~l~t~~H~~~V~sVa---s~~~~~lAsg 624 (630)
|.+.+-...+ |+.+..|.|..-|.++- .+....+.+|
T Consensus 934 gNlf~v~~d~~~~td~eR~~l~~~~~~hlGelvn~f~hg~lv~~~~~s~~~~~~~vlfg 992 (1096)
T KOG1897|consen 934 GNLFTVRKDSDATTDEERQILEEVGKFHLGELVNKFRHGSLVMQLGDSMIPLEPKVLFG 992 (1096)
T ss_pred ccEEEEEecCCCCchhhhhcccceeeEEeccceeeeeecceEeeccccccCCCCcEEEE
No 414
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=53.07 E-value=4.1e+02 Score=30.60 Aligned_cols=55 Identities=5% Similarity=0.042 Sum_probs=35.2
Q ss_pred EEEeC-CCCceEEeccCCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825 551 TVFAL-SDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS 605 (630)
Q Consensus 551 ~Vwdl-sgk~l~tL~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~l~t~~ 605 (630)
.-+|+ +|+.+-++................+++.+..||.++.+|.+||+.+..+.
T Consensus 444 ~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~ 499 (527)
T TIGR03075 444 IAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFK 499 (527)
T ss_pred EEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEe
Confidence 34555 66666655422211112111122667778889999999999999999887
No 415
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.58 E-value=3.9e+02 Score=32.13 Aligned_cols=167 Identities=12% Similarity=0.081 Sum_probs=84.1
Q ss_pred CCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEE
Q 006825 429 ERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLL 508 (630)
Q Consensus 429 ~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~s 508 (630)
..-.|+||+..+..+ ...+-.|. .+-.+-|+.+..+| .-..||+++|+++... .+... ...+......|.-
T Consensus 62 a~~~I~If~~sG~lL-----~~~~w~~~-~lI~mgWs~~eeLI-~v~k~g~v~Vy~~~ge-~ie~~-svg~e~~~~~I~e 132 (829)
T KOG2280|consen 62 ARPYIRIFNISGQLL-----GRILWKHG-ELIGMGWSDDEELI-CVQKDGTVHVYGLLGE-FIESN-SVGFESQMSDIVE 132 (829)
T ss_pred cceeEEEEeccccch-----HHHHhcCC-CeeeecccCCceEE-EEeccceEEEeecchh-hhccc-ccccccccCceeE
Confidence 345689998876532 12233344 78899999887654 4689999999998532 22210 0001112223333
Q ss_pred EEECCCCCEEEEeeCCCeeeeecccccccccccc---------cCccccc----cEEEeC-------------CCCceEE
Q 006825 509 ANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLS---------LDHMVVP----ETVFAL-------------SDKPICS 562 (630)
Q Consensus 509 vafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s---------~d~~i~~----~~Vwdl-------------sgk~l~t 562 (630)
+.+...|-.+.+.+.+ .+.+............. ....+.+ ..+-++ .......
T Consensus 133 c~~f~~GVavlt~~g~-v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~ 211 (829)
T KOG2280|consen 133 CRFFHNGVAVLTVSGQ-VILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHA 211 (829)
T ss_pred EEEecCceEEEecCCc-EEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccc
Confidence 3333355444443221 11111111111100000 0000000 011111 0011112
Q ss_pred eccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825 563 FQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS 605 (630)
Q Consensus 563 L~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~ 605 (630)
+......|..++.||+ ++|+-=-++|.|.+-.+...+++..|.
T Consensus 212 ~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 212 LSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred cCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 2222356788899999 999988999999988888777777765
No 416
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=51.91 E-value=4.4 Score=48.40 Aligned_cols=132 Identities=14% Similarity=0.124 Sum_probs=73.8
Q ss_pred EecccCcCEEEEEEcc-CCCEEEEEeCCCcEEEEECc--CCceeeeeecccccCcccceEEEEECC---CCCEEEEeeCC
Q 006825 451 EIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVV--ESERKGELLEKQEDGHLNMLLLANGSP---EPTSLSPKHLD 524 (630)
Q Consensus 451 tL~gHt~~V~sVaFSp-DG~~LASgS~DgtIrVWDl~--tg~~~~~l~~~~~~gh~~~V~svafSp---dg~~lasgs~D 524 (630)
.++|..+.|-.|.|-+ +...++ -.=|.+-||++. .|+...++...........+..|.|+| ...++..+-.+
T Consensus 127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~ 204 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG 204 (1283)
T ss_pred HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence 3678889999999965 222222 233678889874 454444443222223333334455544 44555556566
Q ss_pred CeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEE-----------EcCC-CeEEEEECCCcEEE
Q 006825 525 NHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLS-----------WSKS-QHLLSSSMDKTVRL 592 (630)
Q Consensus 525 g~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLa-----------fSPd-~~LaSgS~DgtVrI 592 (630)
+.|++-...+ ....-|.+|...+..++ .+|| ..|+.++.||.++.
T Consensus 205 ~~i~lL~~~r-----------------------a~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f 261 (1283)
T KOG1916|consen 205 GEIRLLNINR-----------------------ALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGF 261 (1283)
T ss_pred CceeEeeech-----------------------HHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccce
Confidence 6664322221 11122344655554443 5788 88888999998888
Q ss_pred EeCC-----CCcEEEEEe-cC
Q 006825 593 WHLS-----SKTCLKIFS-HS 607 (630)
Q Consensus 593 WDl~-----tg~~l~t~~-H~ 607 (630)
|.+- ..+|+...+ |.
T Consensus 262 ~Qiyi~g~~~~rclhewkphd 282 (1283)
T KOG1916|consen 262 YQIYITGKIVHRCLHEWKPHD 282 (1283)
T ss_pred eeeeeeccccHhhhhccCCCC
Confidence 8753 335666665 54
No 417
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=51.75 E-value=5.2e+02 Score=31.40 Aligned_cols=26 Identities=4% Similarity=0.038 Sum_probs=23.4
Q ss_pred eEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825 580 HLLSSSMDKTVRLWHLSSKTCLKIFS 605 (630)
Q Consensus 580 ~LaSgS~DgtVrIWDl~tg~~l~t~~ 605 (630)
.++.+..+|.+.+.|-++|+.+..++
T Consensus 461 ~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 461 ALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred EEEEECCCCEEEEEECCCCCEEeece
Confidence 78899999999999999999988664
No 418
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=51.51 E-value=4.1e+02 Score=30.16 Aligned_cols=65 Identities=18% Similarity=0.115 Sum_probs=42.1
Q ss_pred EecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceee--eeecccccCcccceEEEEECCCC
Q 006825 451 EIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKG--ELLEKQEDGHLNMLLLANGSPEP 515 (630)
Q Consensus 451 tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~--~l~~~~~~gh~~~V~svafSpdg 515 (630)
.+...-..-+.|+|.|||++|++--..|.|++++-.++.... .+.......-......|+++|+-
T Consensus 24 ~va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 24 VLLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred EEECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 344445567899999999988876656999999865543211 11100011135778899999885
No 419
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=51.45 E-value=48 Score=23.39 Aligned_cols=32 Identities=19% Similarity=0.337 Sum_probs=20.7
Q ss_pred ecccCcCEEEEEEccCCCEEEEEe-CC--CcEEEE
Q 006825 452 IQAHNGSIWSIKFSLDGRYLASAG-ED--CVIHVW 483 (630)
Q Consensus 452 L~gHt~~V~sVaFSpDG~~LASgS-~D--gtIrVW 483 (630)
+...........|+|||++|+-.+ .+ |.-.||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 334556778999999998776655 44 555555
No 420
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=51.44 E-value=2e+02 Score=29.55 Aligned_cols=111 Identities=14% Similarity=0.032 Sum_probs=60.1
Q ss_pred CEEEEEEccCCCEEEEEe-CCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccc
Q 006825 458 SIWSIKFSLDGRYLASAG-EDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSI 536 (630)
Q Consensus 458 ~V~sVaFSpDG~~LASgS-~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~ 536 (630)
.+...++++||+.+|... .++.-.||-...+.....+. .+ ..+..-.|.+++.+.+....+....+..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~----~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~----- 93 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL----TG--GSLTRPSWDPDGWVWTVDDGSGGVRVVR----- 93 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec----cC--CccccccccCCCCEEEEEcCCCceEEEE-----
Confidence 688999999999777655 23333444333344333321 22 2566778888887776665444442111
Q ss_pred cccccccCccccccEEEeCCCCceE-Eec--cCCCCEEEEEEcCC-CeEEEEE---CCCcEEEEeC
Q 006825 537 NRKSLSLDHMVVPETVFALSDKPIC-SFQ--GHLDDVLDLSWSKS-QHLLSSS---MDKTVRLWHL 595 (630)
Q Consensus 537 ~~~s~s~d~~i~~~~Vwdlsgk~l~-tL~--GHs~~V~sLafSPd-~~LaSgS---~DgtVrIWDl 595 (630)
+...++... .+. +-...|+.+.+||| ..+|--. .++.|.|=-+
T Consensus 94 ----------------~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V 143 (253)
T PF10647_consen 94 ----------------DSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGV 143 (253)
T ss_pred ----------------ecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEE
Confidence 111221111 111 11118999999999 5554333 3566666543
No 421
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=50.47 E-value=1.2e+02 Score=36.52 Aligned_cols=40 Identities=8% Similarity=0.127 Sum_probs=31.8
Q ss_pred ccCcCEEEEEEccC---CCEEEEEeCCCcEEEEECcCCceeee
Q 006825 454 AHNGSIWSIKFSLD---GRYLASAGEDCVIHVWQVVESERKGE 493 (630)
Q Consensus 454 gHt~~V~sVaFSpD---G~~LASgS~DgtIrVWDl~tg~~~~~ 493 (630)
.+...|..+.|+|. +..|+.=..|+++|+||+........
T Consensus 144 ~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~~p~~ 186 (717)
T PF10168_consen 144 NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQHPWQ 186 (717)
T ss_pred CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCCCCeE
Confidence 45678999999995 57888888999999999976554433
No 422
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=49.42 E-value=3.3e+02 Score=28.45 Aligned_cols=39 Identities=10% Similarity=-0.046 Sum_probs=33.7
Q ss_pred cCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE
Q 006825 576 SKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV 614 (630)
Q Consensus 576 SPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa 614 (630)
... .++++.-.-++|...|..+|+.+.+++ -...|+|++
T Consensus 220 D~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitscc 260 (310)
T KOG4499|consen 220 DTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCC 260 (310)
T ss_pred ccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEE
Confidence 334 667777788999999999999999999 888999999
No 423
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=48.84 E-value=3.8e+02 Score=29.00 Aligned_cols=59 Identities=12% Similarity=0.102 Sum_probs=34.2
Q ss_pred cCEEEEEEccCCCEEEEEe-----------CCC-cEEEEECcCC--cee-eeeecccccCcccceEEEEECCCCCEEEE
Q 006825 457 GSIWSIKFSLDGRYLASAG-----------EDC-VIHVWQVVES--ERK-GELLEKQEDGHLNMLLLANGSPEPTSLSP 520 (630)
Q Consensus 457 ~~V~sVaFSpDG~~LASgS-----------~Dg-tIrVWDl~tg--~~~-~~l~~~~~~gh~~~V~svafSpdg~~las 520 (630)
.....|+|.++|+++++-. ..+ .|.+++-.++ ... .+++ .........+++.+++ ++++
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vf----a~~l~~p~Gi~~~~~G-lyV~ 87 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVF----AEELSMVTGLAVAVGG-VYVA 87 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEe----ecCCCCccceeEecCC-EEEe
Confidence 3456899999999877753 223 6766665432 221 1221 2223345678888888 5554
No 424
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=45.32 E-value=3.9e+02 Score=28.11 Aligned_cols=118 Identities=9% Similarity=-0.044 Sum_probs=61.3
Q ss_pred CccceeEEEe-ec--ceEeecCCC--ccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcc
Q 006825 338 HSPIVQELMR-RQ--NVEEGNKDS--FDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRR 412 (630)
Q Consensus 338 Hs~~V~~Laf-s~--~laSgS~D~--tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~ 412 (630)
.+...+.|.| .. ...|.+.-+ .+| .+|..||+.+.+... +.++++-|
T Consensus 43 ~~aFTQGL~~~~~g~LyESTG~yG~S~l~-~~d~~tg~~~~~~~l-------------~~~~FgEG-------------- 94 (264)
T PF05096_consen 43 PTAFTQGLEFLDDGTLYESTGLYGQSSLR-KVDLETGKVLQSVPL-------------PPRYFGEG-------------- 94 (264)
T ss_dssp TT-EEEEEEEEETTEEEEEECSTTEEEEE-EEETTTSSEEEEEE--------------TTT--EEE--------------
T ss_pred CcccCccEEecCCCEEEEeCCCCCcEEEE-EEECCCCcEEEEEEC-------------Ccccccee--------------
Confidence 3456778888 43 334444333 667 889999887665441 11233221
Q ss_pred eEEEeecCCCeEE-EecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCcee
Q 006825 413 SSSATDDSQDVSF-HGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERK 491 (630)
Q Consensus 413 ~Vsa~~~s~d~l~-Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~ 491 (630)
++ ...+.++ -.=..+++.+||..+-+. +.++. ..+.=|.|+ .||+.|+.......|..+|..+.+..
T Consensus 95 -it---~~~d~l~qLTWk~~~~f~yd~~tl~~-----~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~ 162 (264)
T PF05096_consen 95 -IT---ILGDKLYQLTWKEGTGFVYDPNTLKK-----IGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEV 162 (264)
T ss_dssp -EE---EETTEEEEEESSSSEEEEEETTTTEE-----EEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEE
T ss_pred -EE---EECCEEEEEEecCCeEEEEccccceE-----EEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceE
Confidence 11 1122222 223567888999865432 33332 234567777 36666666555667899998887766
Q ss_pred eeee
Q 006825 492 GELL 495 (630)
Q Consensus 492 ~~l~ 495 (630)
+.+.
T Consensus 163 ~~i~ 166 (264)
T PF05096_consen 163 RTIQ 166 (264)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6653
No 425
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.21 E-value=1e+02 Score=38.46 Aligned_cols=142 Identities=13% Similarity=0.044 Sum_probs=78.2
Q ss_pred CEEEEEEccCCCEE--EEEeCCCcEEEEECcCCceeeeeecccccCc------ccceEEEEECCCC-CEEEEeeCCCeee
Q 006825 458 SIWSIKFSLDGRYL--ASAGEDCVIHVWQVVESERKGELLEKQEDGH------LNMLLLANGSPEP-TSLSPKHLDNHLE 528 (630)
Q Consensus 458 ~V~sVaFSpDG~~L--ASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh------~~~V~svafSpdg-~~lasgs~Dg~I~ 528 (630)
+|..+...+|++.. +..+++-.|..+|+++-..........+..| .....++.|.|.- ...+.+..|..|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 45566667776643 3345556788999976433221101111112 1223456666652 2234445566552
Q ss_pred eecccccccccccccCccccccEEEeCC--CCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825 529 KKRRGRSINRKSLSLDHMVVPETVFALS--DKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS 605 (630)
Q Consensus 529 i~~~~~~~~~~s~s~d~~i~~~~Vwdls--gk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~ 605 (630)
+..++ -+.+.++ --+..+++++|+|. ..|+.|-..|++.-|... ++....+.
T Consensus 182 -----------------------V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip 236 (1405)
T KOG3630|consen 182 -----------------------VKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIP 236 (1405)
T ss_pred -----------------------hhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeecc-cceeeccc
Confidence 22221 1112222 24456899999999 899999999999888643 44333332
Q ss_pred -----cCCceEEEE--cCCCcEEEEe
Q 006825 606 -----HSDYDISLV--DRLMLRFAYG 624 (630)
Q Consensus 606 -----H~~~V~sVa--s~~~~~lAsg 624 (630)
....|.||. .+....+.++
T Consensus 237 ~Pp~~e~yrvl~v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 237 EPPVEENYRVLSVTWLSTQEFLVVYG 262 (1405)
T ss_pred CCCcCCCcceeEEEEecceeEEEEec
Confidence 357788888 5555555554
No 426
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=42.87 E-value=1e+02 Score=31.20 Aligned_cols=70 Identities=4% Similarity=-0.113 Sum_probs=47.2
Q ss_pred EeecCCCeEEEecCCcEEEEEeCCCCccccee-eee-Eec-------ccCcCEEEEEEccCCCEEEEEeCCCcEEEEECc
Q 006825 416 ATDDSQDVSFHGQERVRVRQYGKSCKDLTALY-KCQ-EIQ-------AHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVV 486 (630)
Q Consensus 416 a~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~-~v~-tL~-------gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~ 486 (630)
.+......+..-..+|.+++||+..++..-.. .+. .+. .....|..+.++.+|.-|++-+. |...+|+..
T Consensus 17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn-g~~y~y~~~ 95 (219)
T PF07569_consen 17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN-GDSYSYSPD 95 (219)
T ss_pred EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC-CCEEEeccc
Confidence 34444445677788999999999876532111 111 122 46678999999999998888764 778888864
No 427
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=41.66 E-value=6.5e+02 Score=29.63 Aligned_cols=128 Identities=9% Similarity=-0.021 Sum_probs=70.3
Q ss_pred CccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCC--CcccceeeeeEec-c
Q 006825 378 SWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSC--KDLTALYKCQEIQ-A 454 (630)
Q Consensus 378 gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~--~el~~~~~v~tL~-g 454 (630)
|....|..|+|.|-+. +..+ .+.+......|-+|.+.. .+-.++.+-|+-. +
T Consensus 54 GqFEhV~GlsW~P~~~------------------------~~~p-aLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~ 108 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCT------------------------ADTP-ALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIR 108 (671)
T ss_pred eccceeeeeeecCccc------------------------CCCC-ceEEEeccceEEEEEeccCccccccceeeeeeecc
Confidence 5666788889988542 1111 244445566788887652 2222222222211 0
Q ss_pred cCcCE--EEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCC-eeeeec
Q 006825 455 HNGSI--WSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN-HLEKKR 531 (630)
Q Consensus 455 Ht~~V--~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg-~I~i~~ 531 (630)
..-+| ..+-|+|....|+.--....--+.++......-.. .....+.|.+.+|.+||..++.+-... +-.+|+
T Consensus 109 e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVka----Di~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd 184 (671)
T PF15390_consen 109 EPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKA----DIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWD 184 (671)
T ss_pred CCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEE----eccCCceEEEEEecCcCCEEEEEeCCeEEEEEec
Confidence 11112 45668888887776554444455666533322221 234457899999999999888764332 345666
Q ss_pred ccc
Q 006825 532 RGR 534 (630)
Q Consensus 532 ~~~ 534 (630)
...
T Consensus 185 ~~q 187 (671)
T PF15390_consen 185 SAQ 187 (671)
T ss_pred Cch
Confidence 544
No 428
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=41.58 E-value=6e+02 Score=29.23 Aligned_cols=25 Identities=8% Similarity=0.026 Sum_probs=21.4
Q ss_pred CeEEEEECCCcEEEEeCCCCcEEEE
Q 006825 579 QHLLSSSMDKTVRLWHLSSKTCLKI 603 (630)
Q Consensus 579 ~~LaSgS~DgtVrIWDl~tg~~l~t 603 (630)
..|+.+..+|.+.+.|-.+|+.+..
T Consensus 316 ~~v~~~~K~G~~~vlDr~tG~~i~~ 340 (527)
T TIGR03075 316 KLLAHADRNGFFYVLDRTNGKLLSA 340 (527)
T ss_pred EEEEEeCCCceEEEEECCCCceecc
Confidence 3677999999999999999998743
No 429
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=40.26 E-value=5e+02 Score=31.50 Aligned_cols=27 Identities=4% Similarity=0.180 Sum_probs=21.6
Q ss_pred CeEEEEEC----------CCcEEEEeCCCCcEEEEEe
Q 006825 579 QHLLSSSM----------DKTVRLWHLSSKTCLKIFS 605 (630)
Q Consensus 579 ~~LaSgS~----------DgtVrIWDl~tg~~l~t~~ 605 (630)
+.++.|+. +|.|+-+|+.+|+.+-.+.
T Consensus 317 g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 317 TTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD 353 (764)
T ss_pred CEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence 56666643 6889999999999998875
No 430
>PHA02713 hypothetical protein; Provisional
Probab=39.84 E-value=3.7e+02 Score=31.12 Aligned_cols=53 Identities=9% Similarity=0.136 Sum_probs=33.9
Q ss_pred EEEEEeCCC-CcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCC--cEEEEECcCCc
Q 006825 432 RVRQYGKSC-KDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDC--VIHVWQVVESE 489 (630)
Q Consensus 432 ~VriWd~~~-~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~Dg--tIrVWDl~tg~ 489 (630)
.|..||..+ .+.. .+..+.........+.+ +|++.+.||.|+ ++-.+|..+.+
T Consensus 481 ~ve~Ydp~~~~~W~---~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 481 CIFRYNTNTYNGWE---LITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred eEEEecCCCCCCee---EccccCcccccceeEEE--CCEEEEEeeecceeehhhcCccccc
Confidence 467788876 4432 23344444444444444 889999999998 67777776654
No 431
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=39.11 E-value=2.8e+02 Score=35.21 Aligned_cols=159 Identities=13% Similarity=0.034 Sum_probs=83.3
Q ss_pred cCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEc-c-------CCCEEEEEeCCCcEEEEECcCCceeeeeecccc
Q 006825 428 QERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFS-L-------DGRYLASAGEDCVIHVWQVVESERKGELLEKQE 499 (630)
Q Consensus 428 s~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFS-p-------DG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~ 499 (630)
+-|..+.+|+...+. ..+.+.+-...|..|..- | .=++|..-+.--.|.|+-+.-.+....+. .+
T Consensus 96 TiDn~L~lWny~~~~-----e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~--~f 168 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDN-----ELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELS--IF 168 (1311)
T ss_pred EeCCeEEEEEcCCCC-----ccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccc--cc
Confidence 346678999887632 235566666677777642 2 22333333333446666543222211110 01
Q ss_pred cCc------ccceEEEEECCCCCEEEEeeCCCeeee-ecccccccccccccCcccccc-EEE-eCCCCceEEe-ccCCCC
Q 006825 500 DGH------LNMLLLANGSPEPTSLSPKHLDNHLEK-KRRGRSINRKSLSLDHMVVPE-TVF-ALSDKPICSF-QGHLDD 569 (630)
Q Consensus 500 ~gh------~~~V~svafSpdg~~lasgs~Dg~I~i-~~~~~~~~~~s~s~d~~i~~~-~Vw-dlsgk~l~tL-~GHs~~ 569 (630)
..+ ...|.++...-+|+++.+|-+++...+ +.....+... ..+.+... .+. .+-.. +-.+ -+|.++
T Consensus 169 ~~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~---rc~Kiclt~s~ls~lvPs-~~~~~~~~~dp 244 (1311)
T KOG1900|consen 169 NTSFKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGS---RCRKICLTKSVLSSLVPS-LLSVPGSSKDP 244 (1311)
T ss_pred ccceeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhc---ccccccCchhHHHHhhhh-hhcCCCCCCCc
Confidence 111 345678887888999888855532221 1111111100 00011000 000 00011 1222 367889
Q ss_pred EEEEEEcCC-CeEEEEECCCcEEEEeCCC
Q 006825 570 VLDLSWSKS-QHLLSSSMDKTVRLWHLSS 597 (630)
Q Consensus 570 V~sLafSPd-~~LaSgS~DgtVrIWDl~t 597 (630)
|..++.... +.|.+=+.-++|++||+..
T Consensus 245 I~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 245 IRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ceeeEeccccceeeeeccCceEEEEEccC
Confidence 999999888 8999999999999999976
No 432
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=38.40 E-value=3.6e+02 Score=27.52 Aligned_cols=50 Identities=16% Similarity=0.065 Sum_probs=31.9
Q ss_pred CEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEee
Q 006825 469 RYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKH 522 (630)
Q Consensus 469 ~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs 522 (630)
..|..+..-+.|.+|++.+..+.... .-...+.|..+.++..|.++++-=
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~----~F~Tv~~V~~l~y~~~GDYlvTlE 78 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLC----TFSTVGRVLQLVYSEAGDYLVTLE 78 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeE----EEcchhheeEEEeccccceEEEEE
Confidence 33433344578999999833322111 122337788999999999999853
No 433
>PHA03098 kelch-like protein; Provisional
Probab=37.84 E-value=6.5e+02 Score=28.51 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=16.1
Q ss_pred CCCEEEEEeCC-----CcEEEEECcCCc
Q 006825 467 DGRYLASAGED-----CVIHVWQVVESE 489 (630)
Q Consensus 467 DG~~LASgS~D-----gtIrVWDl~tg~ 489 (630)
++++++.||.+ ..+..||..+..
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 78888888876 346678876543
No 434
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=36.67 E-value=5.6e+02 Score=27.41 Aligned_cols=71 Identities=18% Similarity=0.039 Sum_probs=38.8
Q ss_pred cCcCEEEEEEccCCCEEEEEeCCCcEEEEEC-cCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCee
Q 006825 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQV-VESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHL 527 (630)
Q Consensus 455 Ht~~V~sVaFSpDG~~LASgS~DgtIrVWDl-~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I 527 (630)
-...|..|.|.|++.+.+.+ ..+.|+.=+. ...+.-.+-. .....-...+..+++.++..+.+.++....+
T Consensus 185 ~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~-~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~ 256 (302)
T PF14870_consen 185 SSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPI-IPIKTNGYGILDLAYRPPNEIWAVGGSGTLL 256 (302)
T ss_dssp SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B--TTSS--S-EEEEEESSSS-EEEEESTT-EE
T ss_pred ccceehhceecCCCCEEEEe-CCcEEEEccCCCCcccccccc-CCcccCceeeEEEEecCCCCEEEEeCCccEE
Confidence 35679999999999876654 8888888772 2222211110 1111222347899999998888877555433
No 435
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=36.35 E-value=73 Score=21.35 Aligned_cols=26 Identities=15% Similarity=0.120 Sum_probs=22.4
Q ss_pred CeEEEEECCCcEEEEeCCCCcEEEEE
Q 006825 579 QHLLSSSMDKTVRLWHLSSKTCLKIF 604 (630)
Q Consensus 579 ~~LaSgS~DgtVrIWDl~tg~~l~t~ 604 (630)
+.++.++.++.+...|..+|+.+..+
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 57888899999999999999987654
No 436
>PF11538 Snurportin1: Snurportin1; InterPro: IPR024721 Snurportin-1 is a nuclear import receptor that contains an N-terminal importin beta binding domain which is essential for its function as an snRNP-specific nuclear import receptor []. Snurportin-1 interacts with m3G-cap where it enhances the m3G-cap dependent nuclear import of U snRNPs in Xenopus laevis oocytes and digitonin-permeabilized HeLa cells []. This entry represents the snurportin-1 N-terminal importin beta binding domain (IBB). The essential role of the IBB domain for snurportin-1 function suggests that snurportin-1 cooperates with importin beta in mediating nuclear import of snRNPs.; GO: 0005515 protein binding; PDB: 3LWW_D 3NC0_E 3NBZ_E 2Q5D_C 3NBY_B 3GB8_B 3GJX_B 2QNA_B 2P8Q_B.
Probab=36.29 E-value=36 Score=25.37 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=16.0
Q ss_pred ccceeeecCCcchHHHHHHHHHH
Q 006825 67 TKYDVWISEPISVSERRSRLLRE 89 (630)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~ 89 (630)
+.|..+.+ ...-+|||+++|..
T Consensus 5 sqYK~~~~-~~~Q~eRR~~~Le~ 26 (40)
T PF11538_consen 5 SQYKNKGS-ALDQEERRREFLER 26 (40)
T ss_dssp SCTT-TTT-SCSHHHHHHHHHHH
T ss_pred HHhhcccc-hHhHHHHHHHHHHH
Confidence 56888844 44889999999975
No 437
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=33.21 E-value=2.2e+02 Score=31.58 Aligned_cols=117 Identities=11% Similarity=0.067 Sum_probs=52.1
Q ss_pred ECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeC-CCeeeeecccccccccccccCccccccEEEeCCCCceEE
Q 006825 484 QVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHL-DNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICS 562 (630)
Q Consensus 484 Dl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~-Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~t 562 (630)
|-.+|..+..|.......|....+.-+|.+||+.|+.++. ++...+ .+-++....+..
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nl---------------------y~lDL~t~~i~Q 74 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNL---------------------YLLDLATGEITQ 74 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EE---------------------EEEETTT-EEEE
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcce---------------------EEEEcccCEEEE
Confidence 5567777766542222223333445578889876666543 554421 334454455555
Q ss_pred eccCC-CCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCce---EEEEcCCCcEE
Q 006825 563 FQGHL-DDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYD---ISLVDRLMLRF 621 (630)
Q Consensus 563 L~GHs-~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V---~sVas~~~~~l 621 (630)
|.-+. .......++|+ ..|+-......|+--|+.+.+....+. ...++ +-+++.+...+
T Consensus 75 LTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~ 139 (386)
T PF14583_consen 75 LTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKL 139 (386)
T ss_dssp ---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEE
T ss_pred CccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEE
Confidence 54433 22335666787 777666677889999999987655555 44444 34444444443
No 438
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=33.20 E-value=1.8e+02 Score=32.77 Aligned_cols=108 Identities=17% Similarity=0.116 Sum_probs=46.9
Q ss_pred CCCcEEEEECcCCceeeeeecccccCcc-cceEEEEECCC--CCEEEE-eeCCCee-eeecccccccccccccCcccccc
Q 006825 476 EDCVIHVWQVVESERKGELLEKQEDGHL-NMLLLANGSPE--PTSLSP-KHLDNHL-EKKRRGRSINRKSLSLDHMVVPE 550 (630)
Q Consensus 476 ~DgtIrVWDl~tg~~~~~l~~~~~~gh~-~~V~svafSpd--g~~las-gs~Dg~I-~i~~~~~~~~~~s~s~d~~i~~~ 550 (630)
.-.++.+||+.+.+.++++- -+.. ....-|.|..+ ..+-.+ +....+| .++.... +.....
T Consensus 220 yG~~l~vWD~~~r~~~Q~id----Lg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~----------g~W~a~ 285 (461)
T PF05694_consen 220 YGHSLHVWDWSTRKLLQTID----LGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDD----------GEWAAE 285 (461)
T ss_dssp S--EEEEEETTTTEEEEEEE----S-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ET----------TEEEEE
T ss_pred ccCeEEEEECCCCcEeeEEe----cCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCC----------CCeeee
Confidence 34689999999998888863 2322 24556777544 333222 2233333 2222111 001111
Q ss_pred EEEeCCCC---------ceEEeccCCCCEEEEEEcCC-CeEE-EEECCCcEEEEeCCC
Q 006825 551 TVFALSDK---------PICSFQGHLDDVLDLSWSKS-QHLL-SSSMDKTVRLWHLSS 597 (630)
Q Consensus 551 ~Vwdlsgk---------~l~tL~GHs~~V~sLafSPd-~~La-SgS~DgtVrIWDl~t 597 (630)
+|-++..+ .++.|..-..-|++|..|.| ++|. +.=.+|.||.||+..
T Consensus 286 kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 286 KVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp EEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred EEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence 22222111 11112222355899999998 7765 555699999999976
No 439
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=33.08 E-value=6.9e+02 Score=27.43 Aligned_cols=30 Identities=17% Similarity=0.468 Sum_probs=24.4
Q ss_pred CCEEEEEEcCC-CeEEEEECCCcEEEEeCCC
Q 006825 568 DDVLDLSWSKS-QHLLSSSMDKTVRLWHLSS 597 (630)
Q Consensus 568 ~~V~sLafSPd-~~LaSgS~DgtVrIWDl~t 597 (630)
..|..|+..+. ++|++...+++|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 34999999888 9999999999999999975
No 440
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=31.52 E-value=7.6e+02 Score=27.44 Aligned_cols=113 Identities=9% Similarity=-0.006 Sum_probs=62.8
Q ss_pred cCEEEEEEccCCCEEEEEeCCCcEEEEECcCCcee-eeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccccc
Q 006825 457 GSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERK-GELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRS 535 (630)
Q Consensus 457 ~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~-~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~ 535 (630)
+....+..++||.+++.+..-..++-||- +... ..+ .......+..+.+.+++.+++.+ ..+.+......
T Consensus 239 Gsf~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~----~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~S~d~-- 309 (398)
T PLN00033 239 GTFSTVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPH----NRASARRIQNMGWRADGGLWLLT-RGGGLYVSKGT-- 309 (398)
T ss_pred cceeeEEEcCCCCEEEEECCccEEEecCC--CCcceEEe----cCCCccceeeeeEcCCCCEEEEe-CCceEEEecCC--
Confidence 34566778889988887655444445654 2221 111 12334567888999999988777 44544111100
Q ss_pred ccccccccCccccccEEEeCCCCceEEecc--CCCCEEEEEEcCCCeEEEEECCCcEEEEe
Q 006825 536 INRKSLSLDHMVVPETVFALSDKPICSFQG--HLDDVLDLSWSKSQHLLSSSMDKTVRLWH 594 (630)
Q Consensus 536 ~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~G--Hs~~V~sLafSPd~~LaSgS~DgtVrIWD 594 (630)
. ..|.. ..+..+.- -...++++.|.+++.++.++..|.|....
T Consensus 310 ----------G----~~~~~--~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~ 354 (398)
T PLN00033 310 ----------G----LTEED--FDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRST 354 (398)
T ss_pred ----------C----Ccccc--cceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeC
Confidence 0 01100 01121111 12358999999886777777888877664
No 441
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=31.30 E-value=6.2 Score=44.37 Aligned_cols=135 Identities=16% Similarity=0.177 Sum_probs=81.0
Q ss_pred EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEE-EeCCCcEEEEECcCCceeeeeecccccCc
Q 006825 424 SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLAS-AGEDCVIHVWQVVESERKGELLEKQEDGH 502 (630)
Q Consensus 424 l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LAS-gS~DgtIrVWDl~tg~~~~~l~~~~~~gh 502 (630)
++.++.+..|..||....... . ..-++....|+|..+|..++. +-.-+.+.|||+.+.... ++ ..+-
T Consensus 49 lavaca~tiv~~YD~agq~~l------e-~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq-qL----E~gg 116 (615)
T KOG2247|consen 49 LAVACANTIVIYYDKAGQVIL------E-LNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ-QL----ESGG 116 (615)
T ss_pred eehhhhhhHHHhhhhhcceec------c-cCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH-HH----hccC
Confidence 445555666777876543110 1 124556677888887765544 556688999999764422 22 1122
Q ss_pred ccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCCCeE
Q 006825 503 LNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKSQHL 581 (630)
Q Consensus 503 ~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd~~L 581 (630)
...-.-+.|++-+..++.+-..+++. ++.. +.+.+...-.|...+++++|.+.++.
T Consensus 117 ~~s~sll~wsKg~~el~ig~~~gn~v-----------------------iynhgtsR~iiv~Gkh~RRgtq~av~lEd~v 173 (615)
T KOG2247|consen 117 TSSKSLLAWSKGTPELVIGNNAGNIV-----------------------IYNHGTSRRIIVMGKHQRRGTQIAVTLEDYV 173 (615)
T ss_pred cchHHHHhhccCCccccccccccceE-----------------------EEeccchhhhhhhcccccceeEEEeccccee
Confidence 22222367787777777776667763 3333 22222222238889999999888888
Q ss_pred EEEECCCcEEEE
Q 006825 582 LSSSMDKTVRLW 593 (630)
Q Consensus 582 aSgS~DgtVrIW 593 (630)
+.++.|.++-+-
T Consensus 174 il~dcd~~L~v~ 185 (615)
T KOG2247|consen 174 ILCDCDNTLSVT 185 (615)
T ss_pred eecCcHHHHHHh
Confidence 888888765543
No 442
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=29.91 E-value=1.6e+02 Score=25.74 Aligned_cols=45 Identities=18% Similarity=0.159 Sum_probs=29.3
Q ss_pred EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEE
Q 006825 424 SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASA 474 (630)
Q Consensus 424 l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASg 474 (630)
+..+...|++..||..+++. ..|..--..-+.|++++|+.+|+.+
T Consensus 30 ~le~~~~GRll~ydp~t~~~------~vl~~~L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 30 LLEGRPTGRLLRYDPSTKET------TVLLDGLYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp HHHT---EEEEEEETTTTEE------EEEEEEESSEEEEEE-TTSSEEEEE
T ss_pred eecCCCCcCEEEEECCCCeE------EEehhCCCccCeEEEcCCCCEEEEE
Confidence 44566788999999998853 3333334467899999999976654
No 443
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=29.10 E-value=1.2e+02 Score=21.59 Aligned_cols=26 Identities=12% Similarity=0.080 Sum_probs=22.9
Q ss_pred eEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825 580 HLLSSSMDKTVRLWHLSSKTCLKIFS 605 (630)
Q Consensus 580 ~LaSgS~DgtVrIWDl~tg~~l~t~~ 605 (630)
.+..++.||.|.-.|..+|+.+-.+.
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~ 27 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQ 27 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEE
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeee
Confidence 45666999999999999999999887
No 444
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=28.71 E-value=8.5e+02 Score=27.08 Aligned_cols=115 Identities=7% Similarity=-0.007 Sum_probs=62.0
Q ss_pred CcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceee--eeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccc
Q 006825 456 NGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKG--ELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRG 533 (630)
Q Consensus 456 t~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~--~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~ 533 (630)
...+..+.|.++|.+++.+ .+|.+. |....+..-. .+.......-...+..+.|.+++..+++| ..|.+.+...+
T Consensus 280 ~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~D~ 356 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRSTDG 356 (398)
T ss_pred ccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeCCC
Confidence 4568999999999977755 566643 4444443111 11100011112357889999888887776 55655222211
Q ss_pred ccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCCCeEEEEECCCcEEEE
Q 006825 534 RSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLW 593 (630)
Q Consensus 534 ~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd~~LaSgS~DgtVrIW 593 (630)
- +-|... ..-.+-....+.+.|.+++.....+.+|.|.-|
T Consensus 357 G----------------~tW~~~----~~~~~~~~~ly~v~f~~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 357 G----------------KSWKRD----KGADNIAANLYSVKFFDDKKGFVLGNDGVLLRY 396 (398)
T ss_pred C----------------cceeEc----cccCCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence 1 222220 000112345678998776555555667776554
No 445
>PRK06856 DNA polymerase III subunit psi; Validated
Probab=28.27 E-value=34 Score=31.91 Aligned_cols=14 Identities=36% Similarity=0.824 Sum_probs=11.1
Q ss_pred HHHHHHHHHhCCCC
Q 006825 81 ERRSRLLREMGLSH 94 (630)
Q Consensus 81 ~~~~~~~~~~~~~~ 94 (630)
.||.+||++||+.-
T Consensus 2 ~rrd~~LqemGItq 15 (128)
T PRK06856 2 SRRDWLLQQLGITQ 15 (128)
T ss_pred CHHHHHHHHcCCce
Confidence 48888888888763
No 446
>TIGR00664 DNA_III_psi DNA polymerase III, psi subunit. This small subunit of the DNA polymerase III holoenzyme in E. coli and related species appearsto have a narrow taxonomic distribution. It is not found so far outside the gamma subdivision proteobacteria.
Probab=27.58 E-value=35 Score=32.06 Aligned_cols=14 Identities=50% Similarity=0.871 Sum_probs=11.4
Q ss_pred HHHHHHHHHhCCCC
Q 006825 81 ERRSRLLREMGLSH 94 (630)
Q Consensus 81 ~~~~~~~~~~~~~~ 94 (630)
.||.+||++||++-
T Consensus 3 ~rrd~lLqeMGItq 16 (133)
T TIGR00664 3 SRRDLLLQELGISQ 16 (133)
T ss_pred cHHHHHHHHcCCce
Confidence 58899999999763
No 447
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=27.52 E-value=8.5e+02 Score=29.43 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=25.3
Q ss_pred CEEEEEEcc-CCCEEEEEeCCCcEEEEEC
Q 006825 458 SIWSIKFSL-DGRYLASAGEDCVIHVWQV 485 (630)
Q Consensus 458 ~V~sVaFSp-DG~~LASgS~DgtIrVWDl 485 (630)
+...|+|+| +.+.||.....|..-||++
T Consensus 147 ~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i 175 (765)
T PF10214_consen 147 PHADVAFNPWDQRQFAIVDEKGNWSVWDI 175 (765)
T ss_pred ccceEEeccCccceEEEEeccCcEEEEEe
Confidence 577999999 5668999999999999999
No 448
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=26.92 E-value=8.4e+02 Score=26.46 Aligned_cols=64 Identities=22% Similarity=0.207 Sum_probs=45.4
Q ss_pred EEEeCCCCceEEec--cCCCCEEEEEEcCC-------CeEEEEECCCcEEEEeCCCCcEEEEEe-c------CCceEEEE
Q 006825 551 TVFALSDKPICSFQ--GHLDDVLDLSWSKS-------QHLLSSSMDKTVRLWHLSSKTCLKIFS-H------SDYDISLV 614 (630)
Q Consensus 551 ~Vwdlsgk~l~tL~--GHs~~V~sLafSPd-------~~LaSgS~DgtVrIWDl~tg~~l~t~~-H------~~~V~sVa 614 (630)
.+|+..|..++.|. +.-..-+.|+..|- .+|+-=-.||+|..+|..+|+.+..+. . -+..|.|+
T Consensus 225 dvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~ 304 (336)
T TIGR03118 225 NVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLT 304 (336)
T ss_pred EEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEee
Confidence 57788888888873 34445577777652 455555669999999999999888886 1 23356676
No 449
>PRK14364 Maf-like protein; Provisional
Probab=26.91 E-value=38 Score=33.44 Aligned_cols=17 Identities=47% Similarity=0.729 Sum_probs=15.1
Q ss_pred cchHHHHHHHHHHhCCC
Q 006825 77 ISVSERRSRLLREMGLS 93 (630)
Q Consensus 77 ~~~~~~~~~~~~~~~~~ 93 (630)
+|=|.||+.||++||+.
T Consensus 2 AS~SprR~elL~~~g~~ 18 (181)
T PRK14364 2 ASSSPRRRELLQQLGLN 18 (181)
T ss_pred CCCCHHHHHHHHHCCCC
Confidence 56789999999999995
No 450
>PRK01441 Maf-like protein; Reviewed
Probab=25.97 E-value=36 Score=34.29 Aligned_cols=17 Identities=41% Similarity=0.540 Sum_probs=15.3
Q ss_pred cchHHHHHHHHHHhCCC
Q 006825 77 ISVSERRSRLLREMGLS 93 (630)
Q Consensus 77 ~~~~~~~~~~~~~~~~~ 93 (630)
+|=|.||+.||++||+.
T Consensus 10 AS~SprR~elL~~~Gi~ 26 (207)
T PRK01441 10 ASGSPRRVELLNQAGIE 26 (207)
T ss_pred eCCCHHHHHHHHhcCCC
Confidence 57789999999999995
No 451
>TIGR00172 maf MAF protein. This nonessential gene causes inhibition of septation when overexpressed. A member of the family is found in the Archaeon Pyrococcus horikoshii and another in the round worm Caenorhabditis elegans.
Probab=25.14 E-value=40 Score=33.29 Aligned_cols=17 Identities=53% Similarity=0.743 Sum_probs=15.1
Q ss_pred cchHHHHHHHHHHhCCC
Q 006825 77 ISVSERRSRLLREMGLS 93 (630)
Q Consensus 77 ~~~~~~~~~~~~~~~~~ 93 (630)
+|=|.||+.||++|||.
T Consensus 8 AS~SprR~elL~~~g~~ 24 (183)
T TIGR00172 8 ASQSPRRKELLEELGIS 24 (183)
T ss_pred eCCCHHHHHHHHHCCCC
Confidence 57789999999999985
No 452
>PRK02478 Maf-like protein; Reviewed
Probab=24.74 E-value=41 Score=33.69 Aligned_cols=18 Identities=39% Similarity=0.397 Sum_probs=15.5
Q ss_pred cchHHHHHHHHHHhCCCC
Q 006825 77 ISVSERRSRLLREMGLSH 94 (630)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~ 94 (630)
+|=|.||+.||++|||.-
T Consensus 8 AS~SprR~elL~~~g~~f 25 (199)
T PRK02478 8 ASKSPFRRALLENAGLEF 25 (199)
T ss_pred eCCCHHHHHHHHHCCCCe
Confidence 567899999999999963
No 453
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=24.34 E-value=9.1e+02 Score=26.98 Aligned_cols=21 Identities=5% Similarity=-0.184 Sum_probs=16.4
Q ss_pred cceEEEEECCCCCEEEEeeCC
Q 006825 504 NMLLLANGSPEPTSLSPKHLD 524 (630)
Q Consensus 504 ~~V~svafSpdg~~lasgs~D 524 (630)
..-..|.|.|||+++++.+..
T Consensus 177 H~g~~l~f~pDG~Lyvs~G~~ 197 (399)
T COG2133 177 HFGGRLVFGPDGKLYVTTGSN 197 (399)
T ss_pred cCcccEEECCCCcEEEEeCCC
Confidence 345589999999988887655
No 454
>PRK13684 Ycf48-like protein; Provisional
Probab=24.34 E-value=8.9e+02 Score=25.89 Aligned_cols=117 Identities=8% Similarity=-0.089 Sum_probs=61.9
Q ss_pred CcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccccc
Q 006825 456 NGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRS 535 (630)
Q Consensus 456 t~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~ 535 (630)
...++++.+.++++.++. +..|.+++=....+..-..+. .+.......+..+.+.+++.+++.+ .++.+.....
T Consensus 214 ~~~l~~i~~~~~g~~~~v-g~~G~~~~~s~d~G~sW~~~~-~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~~S~d--- 287 (334)
T PRK13684 214 SRRLQSMGFQPDGNLWML-ARGGQIRFNDPDDLESWSKPI-IPEITNGYGYLDLAYRTPGEIWAGG-GNGTLLVSKD--- 287 (334)
T ss_pred cccceeeeEcCCCCEEEE-ecCCEEEEccCCCCCcccccc-CCccccccceeeEEEcCCCCEEEEc-CCCeEEEeCC---
Confidence 457899999999987765 456776532233333322211 0001122456788899988877665 5565421111
Q ss_pred ccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCCCeEEEEECCCcEEEEeC
Q 006825 536 INRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHL 595 (630)
Q Consensus 536 ~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl 595 (630)
.. .-|.. +....+-....+.+.|..++.++..+..|.|--|+-
T Consensus 288 ---------~G----~tW~~----~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~il~~~~ 330 (334)
T PRK13684 288 ---------GG----KTWEK----DPVGEEVPSNFYKIVFLDPEKGFVLGQRGVLLRYVG 330 (334)
T ss_pred ---------CC----CCCeE----CCcCCCCCcceEEEEEeCCCceEEECCCceEEEecC
Confidence 00 11211 000011223567777776644455667788877753
No 455
>PRK14367 Maf-like protein; Provisional
Probab=24.25 E-value=43 Score=33.65 Aligned_cols=18 Identities=33% Similarity=0.392 Sum_probs=15.5
Q ss_pred cchHHHHHHHHHHhCCCC
Q 006825 77 ISVSERRSRLLREMGLSH 94 (630)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~ 94 (630)
+|=|.||+.||++||+.-
T Consensus 7 AS~SprR~eLL~~~Gi~f 24 (202)
T PRK14367 7 GSNSPRRMEILTQLGYRV 24 (202)
T ss_pred eCCCHHHHHHHHHCCCCe
Confidence 577899999999999953
No 456
>PRK00234 Maf-like protein; Reviewed
Probab=23.98 E-value=44 Score=33.27 Aligned_cols=18 Identities=33% Similarity=0.355 Sum_probs=15.7
Q ss_pred cchHHHHHHHHHHhCCCC
Q 006825 77 ISVSERRSRLLREMGLSH 94 (630)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~ 94 (630)
+|=|.||+.||++||+.-
T Consensus 7 AS~SprR~elL~~~gi~f 24 (192)
T PRK00234 7 ASSSPYRRELLARLRLPF 24 (192)
T ss_pred ecCCHHHHHHHHHCCCCc
Confidence 567899999999999964
No 457
>PRK04056 Maf-like protein; Reviewed
Probab=23.98 E-value=45 Score=32.90 Aligned_cols=17 Identities=41% Similarity=0.626 Sum_probs=15.0
Q ss_pred cchHHHHHHHHHHhCCC
Q 006825 77 ISVSERRSRLLREMGLS 93 (630)
Q Consensus 77 ~~~~~~~~~~~~~~~~~ 93 (630)
+|=|-||+.||++|||.
T Consensus 5 AS~SprR~elL~~~g~~ 21 (180)
T PRK04056 5 ASSSSTRANLLKEAGIE 21 (180)
T ss_pred eCCCHHHHHHHHHCCCC
Confidence 56789999999999995
No 458
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=23.92 E-value=1.3e+03 Score=27.63 Aligned_cols=146 Identities=16% Similarity=0.142 Sum_probs=79.9
Q ss_pred CcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceee--eeecccccCcccceEEEEECCC------CCEEEEeeC--CC
Q 006825 456 NGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKG--ELLEKQEDGHLNMLLLANGSPE------PTSLSPKHL--DN 525 (630)
Q Consensus 456 t~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~--~l~~~~~~gh~~~V~svafSpd------g~~lasgs~--Dg 525 (630)
.+.|..|.|..+++.++..-..|.|.+||...+.... ++ ...+...+..-.|-++ ..++++-+. +.
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l----~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~ 204 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQL----KLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNS 204 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEecccccccccccc----ccccccceehhhhhcccccccCCceEEEEEEcCCC
Confidence 6789999999999999999999999999993322211 11 1122221111122222 223333222 22
Q ss_pred eeeeecccccccccccccCccccccEEEeC--CCCceEEec---cCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCc
Q 006825 526 HLEKKRRGRSINRKSLSLDHMVVPETVFAL--SDKPICSFQ---GHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKT 599 (630)
Q Consensus 526 ~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl--sgk~l~tL~---GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~ 599 (630)
.+.. +++.+ ....+..+. -+........|.-. +.|.-= .+++|.+|.+..-+
T Consensus 205 k~~y---------------------kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~ 262 (670)
T PF10395_consen 205 KLSY---------------------KLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQ 262 (670)
T ss_pred cEEE---------------------EEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCce
Confidence 2211 45555 444444443 12222334444443 444333 78899999999988
Q ss_pred EEEEEe-----cC--CceEEEE--cCCCcEEEEecce
Q 006825 600 CLKIFS-----HS--DYDISLV--DRLMLRFAYGAFL 627 (630)
Q Consensus 600 ~l~t~~-----H~--~~V~sVa--s~~~~~lAsgs~~ 627 (630)
..+++. .. ..+.++. +++-..++.+..+
T Consensus 263 ~~~tI~l~~ii~~~~~~~vSl~~~s~nRvLLs~~nkI 299 (670)
T PF10395_consen 263 IQKTISLPSIIDKESDDLVSLKPPSPNRVLLSVNNKI 299 (670)
T ss_pred EEEEEEechhhccccccceEeecCCCCeEEEEcCCEE
Confidence 888775 12 3566777 5555555554443
No 459
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=23.35 E-value=2.5e+02 Score=19.59 Aligned_cols=26 Identities=12% Similarity=0.179 Sum_probs=20.9
Q ss_pred eEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825 580 HLLSSSMDKTVRLWHLSSKTCLKIFS 605 (630)
Q Consensus 580 ~LaSgS~DgtVrIWDl~tg~~l~t~~ 605 (630)
++++.-.+++|.++|..+++.+..+.
T Consensus 6 lyv~~~~~~~v~~id~~~~~~~~~i~ 31 (42)
T TIGR02276 6 LYVTNSGSNTVSVIDTATNKVIATIP 31 (42)
T ss_pred EEEEeCCCCEEEEEECCCCeEEEEEE
Confidence 34455568999999999999888876
No 460
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=23.32 E-value=5.9e+02 Score=30.64 Aligned_cols=108 Identities=9% Similarity=0.095 Sum_probs=66.0
Q ss_pred CeEEEecCCcEEEEEeCCC---------Cccc------ceeeeeEecccCcCEEEEEEc--cCCCEEEEEeCCCcEEEEE
Q 006825 422 DVSFHGQERVRVRQYGKSC---------KDLT------ALYKCQEIQAHNGSIWSIKFS--LDGRYLASAGEDCVIHVWQ 484 (630)
Q Consensus 422 d~l~Sgs~Dg~VriWd~~~---------~el~------~~~~v~tL~gHt~~V~sVaFS--pDG~~LASgS~DgtIrVWD 484 (630)
+.|+.+.+||.|.+|.++. .+.. ...+--.+. -...+|.++++ ...++||.++.-..|-||-
T Consensus 115 EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFa 193 (717)
T PF08728_consen 115 EVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFA 193 (717)
T ss_pred eEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEE
Confidence 3478888999999996521 0000 000111122 34589999999 8889999999999999987
Q ss_pred CcCCceeeeeecccccCcccceEEEEECCCC-----C-EEEEeeCCCeeeeecc
Q 006825 485 VVESERKGELLEKQEDGHLNMLLLANGSPEP-----T-SLSPKHLDNHLEKKRR 532 (630)
Q Consensus 485 l~tg~~~~~l~~~~~~gh~~~V~svafSpdg-----~-~lasgs~Dg~I~i~~~ 532 (630)
.......... .....+...|.+|+|-++. . .+++++-.|.+-+++.
T Consensus 194 f~l~~~r~~~--~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 194 FALVDERFYH--VPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred Eecccccccc--ccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 6542111110 0012356677888886652 2 6777778887655444
No 461
>PRK14363 Maf-like protein; Provisional
Probab=22.91 E-value=47 Score=33.47 Aligned_cols=18 Identities=33% Similarity=0.547 Sum_probs=15.4
Q ss_pred cchHHHHHHHHHHhCCCC
Q 006825 77 ISVSERRSRLLREMGLSH 94 (630)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~ 94 (630)
+|=|-||+.||++||+.-
T Consensus 6 AS~SprR~elL~~~G~~f 23 (204)
T PRK14363 6 ASSSPRRRQLMELLGIEF 23 (204)
T ss_pred eCCCHHHHHHHHhCCCCe
Confidence 567899999999999953
No 462
>cd00555 Maf Nucleotide binding protein Maf. Maf has been implicated in inhibition of septum formation in eukaryotes, bacteria and archaea, but homologs in B.subtilis and S.cerevisiae are nonessential for cell division. Maf has been predicted to be a nucleotide- or nucleic acid-binding protein with structural similarity to the hypoxanthine/xanthine NTP pyrophosphatase Ham1 from Methanococcus jannaschii, RNase H from Escherichia coli, and some other nucleotide or RNA-binding proteins.
Probab=22.87 E-value=49 Score=32.55 Aligned_cols=17 Identities=41% Similarity=0.696 Sum_probs=15.0
Q ss_pred cchHHHHHHHHHHhCCC
Q 006825 77 ISVSERRSRLLREMGLS 93 (630)
Q Consensus 77 ~~~~~~~~~~~~~~~~~ 93 (630)
+|=|.||+.||++||+.
T Consensus 4 aS~SprR~elL~~~g~~ 20 (180)
T cd00555 4 ASASPRRRELLEQLGIP 20 (180)
T ss_pred CCCCHHHHHHHHhCCCC
Confidence 56789999999999994
No 463
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.70 E-value=5.4e+02 Score=32.87 Aligned_cols=34 Identities=12% Similarity=0.155 Sum_probs=31.3
Q ss_pred ccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcC
Q 006825 454 AHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVE 487 (630)
Q Consensus 454 gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~t 487 (630)
.|.++|..|++...-..|.+=++-++|.+|++..
T Consensus 240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 6788999999988888999999999999999976
No 464
>PRK14368 Maf-like protein; Provisional
Probab=22.55 E-value=48 Score=33.06 Aligned_cols=18 Identities=44% Similarity=0.586 Sum_probs=15.7
Q ss_pred cchHHHHHHHHHHhCCCC
Q 006825 77 ISVSERRSRLLREMGLSH 94 (630)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~ 94 (630)
+|=|-||+.||++|||.-
T Consensus 10 AS~SprR~eLL~~~g~~f 27 (193)
T PRK14368 10 ASASPRRSELLASAGIEF 27 (193)
T ss_pred eCCCHHHHHHHHHCCCCe
Confidence 577899999999999953
No 465
>PF02545 Maf: Maf-like protein; InterPro: IPR003697 Maf is a putative inhibitor of septum formation in eukaryotes, bacteria, and archaea. The Maf protein shares substantial amino acid sequence identity with the Escherichia coli OrfE protein [].; GO: 0005737 cytoplasm; PDB: 2P5X_A 1EXC_B 1EX2_A.
Probab=22.37 E-value=43 Score=33.41 Aligned_cols=17 Identities=41% Similarity=0.729 Sum_probs=10.8
Q ss_pred cchHHHHHHHHHHhCCC
Q 006825 77 ISVSERRSRLLREMGLS 93 (630)
Q Consensus 77 ~~~~~~~~~~~~~~~~~ 93 (630)
+|-|.||+.||++||+.
T Consensus 6 aS~SprR~elL~~~g~~ 22 (195)
T PF02545_consen 6 ASSSPRRRELLKQLGIN 22 (195)
T ss_dssp ----HHHHHHHHCTT--
T ss_pred eCCCHHHHHHHHHCCCC
Confidence 57799999999999964
No 466
>PRK00078 Maf-like protein; Reviewed
Probab=22.24 E-value=49 Score=32.93 Aligned_cols=18 Identities=39% Similarity=0.447 Sum_probs=15.5
Q ss_pred cchHHHHHHHHHHhCCCC
Q 006825 77 ISVSERRSRLLREMGLSH 94 (630)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~ 94 (630)
+|=|.||+.||++||+.-
T Consensus 6 AS~SprR~elL~~~g~~f 23 (192)
T PRK00078 6 ASASERRQELLKRILEDF 23 (192)
T ss_pred eCCCHHHHHHHHhCCCCe
Confidence 567899999999999854
No 467
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=21.86 E-value=1.3e+03 Score=26.88 Aligned_cols=205 Identities=12% Similarity=0.113 Sum_probs=0.0
Q ss_pred cccccccEEEEECCCCcEEEEeeecCCCceeEEEEcCCCceE----eeecceeeecCccceeEEEeec-----ceEeecC
Q 006825 286 AGVAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQL----TIEEFEMCVGHSPIVQELMRRQ-----NVEEGNK 356 (630)
Q Consensus 286 ~~~~~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~l----t~eef~~l~GHs~~V~~Lafs~-----~laSgS~ 356 (630)
.+.+.+..+.....+-+-|++. +.....++.+..| .| .+..+....|.+-....+|... .+..|..
T Consensus 414 aa~e~Ns~L~Vgfrn~rsyVtR----~n~IGVFk~~de~-~LeF~aaiknvs~~~GKSidp~K~mlh~~dssli~~dg~~ 488 (776)
T COG5167 414 AADEKNSHLVVGFRNERSYVTR----GNSIGVFKNTDEG-SLEFKAAIKNVSDDGGKSIDPEKIMLHDNDSSLIYLDGGE 488 (776)
T ss_pred hhcccCceEEEEEcccceeEee----CCeeeeEeccCCc-ceehhhhhhhccCCCCCcCChhhceeecCCcceEEecCCC
Q ss_pred CCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEE
Q 006825 357 DSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQY 436 (630)
Q Consensus 357 D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriW 436 (630)
...+. --|+..|+.+-... -|...| |.|.|+-+ +....+...+.|-.+..|.-.
T Consensus 489 ~~kLy-kmDIErGkvveeW~-~~ddvv--Vqy~p~~k----------------------f~qmt~eqtlvGlS~~svFrI 542 (776)
T COG5167 489 RDKLY-KMDIERGKVVEEWD-LKDDVV--VQYNPYFK----------------------FQQMTDEQTLVGLSDYSVFRI 542 (776)
T ss_pred cccce-eeecccceeeeEee-cCCcce--eecCCchh----------------------HHhcCccceEEeecccceEEe
Q ss_pred eCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCC
Q 006825 437 GKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPT 516 (630)
Q Consensus 437 d~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~ 516 (630)
|..... ..+...+.-.=-+..-.+.......-++|.||.-|-||+||--.-.....+ .+-...|..+..+.+|+
T Consensus 543 DPR~~g-NKi~v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtal-----P~lG~aIk~idvta~Gk 616 (776)
T COG5167 543 DPRARG-NKIKVVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTAL-----PGLGDAIKHIDVTANGK 616 (776)
T ss_pred cccccC-CceeeeeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcC-----cccccceeeeEeecCCc
Q ss_pred EEEEeeCCCee
Q 006825 517 SLSPKHLDNHL 527 (630)
Q Consensus 517 ~lasgs~Dg~I 527 (630)
++++.+..-.+
T Consensus 617 ~ilaTCk~yll 627 (776)
T COG5167 617 HILATCKNYLL 627 (776)
T ss_pred EEEEeecceEE
No 468
>PRK00648 Maf-like protein; Reviewed
Probab=21.74 E-value=51 Score=32.77 Aligned_cols=17 Identities=29% Similarity=0.436 Sum_probs=15.1
Q ss_pred cchHHHHHHHHHHhCCC
Q 006825 77 ISVSERRSRLLREMGLS 93 (630)
Q Consensus 77 ~~~~~~~~~~~~~~~~~ 93 (630)
+|=|-||+.||++|||.
T Consensus 8 AS~SprR~elL~~~g~~ 24 (191)
T PRK00648 8 ASSSPRRKEILEGFRIP 24 (191)
T ss_pred eCCCHHHHHHHHHCCCC
Confidence 57789999999999995
No 469
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=21.71 E-value=1e+03 Score=25.50 Aligned_cols=104 Identities=11% Similarity=0.090 Sum_probs=48.2
Q ss_pred cCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCCC
Q 006825 500 DGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQ 579 (630)
Q Consensus 500 ~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd~ 579 (630)
.+-...+..+.-+++|++++.+.....+..|+.+. ..|. + .-..-...|..+.|.|++
T Consensus 141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~----------------~~w~----~--~~r~~~~riq~~gf~~~~ 198 (302)
T PF14870_consen 141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQ----------------TTWQ----P--HNRNSSRRIQSMGFSPDG 198 (302)
T ss_dssp -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-----------------SS-E----E--EE--SSS-EEEEEE-TTS
T ss_pred cCCcceeEeEEECCCCcEEEEECcccEEEEecCCC----------------ccce----E--EccCccceehhceecCCC
Confidence 34446788888899999998886655553333221 1111 1 112244678999999994
Q ss_pred eEEEEECCCcEEEEeC-CCCcEEEE--Ee--cCCc-eEEEE-cCCCcEEEEec
Q 006825 580 HLLSSSMDKTVRLWHL-SSKTCLKI--FS--HSDY-DISLV-DRLMLRFAYGA 625 (630)
Q Consensus 580 ~LaSgS~DgtVrIWDl-~tg~~l~t--~~--H~~~-V~sVa-s~~~~~lAsgs 625 (630)
.|.-....|.|+.=+. ...+.... +. -.++ +..++ .+.....+.++
T Consensus 199 ~lw~~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg 251 (302)
T PF14870_consen 199 NLWMLARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG 251 (302)
T ss_dssp -EEEEETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES
T ss_pred CEEEEeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC
Confidence 4433458888887772 22221111 11 2233 67777 44455555554
No 470
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=21.66 E-value=1.2e+03 Score=26.26 Aligned_cols=180 Identities=11% Similarity=0.037 Sum_probs=0.0
Q ss_pred EeCCCCcccceeeeeEecccCcCEEEEEEccCCC-EEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCC
Q 006825 436 YGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGR-YLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE 514 (630)
Q Consensus 436 Wd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~-~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpd 514 (630)
|....+ .-.++....-.|-.+.-+++++ .|+.||..|.+||++......... .......-..+|..+..-
T Consensus 10 Wst~~~------~~e~~d~~~l~v~~~~~~~~~~d~IivGS~~G~LrIy~P~~~~~~~~-~lllE~~l~~PILqv~~G-- 80 (418)
T PF14727_consen 10 WSTKCG------ENEEFDQGSLCVGNLDNSPSGSDKIIVGSYSGILRIYDPSGNEFQPE-DLLLETQLKDPILQVECG-- 80 (418)
T ss_pred eeccCC------CCCcCcCceEEEEcccCCCCCccEEEEeccccEEEEEccCCCCCCCc-cEEEEEecCCcEEEEEec--
Q ss_pred CCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC---CeEEEEECCCcEE
Q 006825 515 PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS---QHLLSSSMDKTVR 591 (630)
Q Consensus 515 g~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd---~~LaSgS~DgtVr 591 (630)
.++.+..+..+.+--+.+-..-.....++......-+.+.-.--+.|+-..-....-.|-.- .+|..-|.||++.
T Consensus 81 --~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~ 158 (418)
T PF14727_consen 81 --KFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLS 158 (418)
T ss_pred --cccCCCCcceEEEecCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEE
Q ss_pred EEeCCCCcEEEEEe---cCCceEEEEcCCCcEEEEecc
Q 006825 592 LWHLSSKTCLKIFS---HSDYDISLVDRLMLRFAYGAF 626 (630)
Q Consensus 592 IWDl~tg~~l~t~~---H~~~V~sVas~~~~~lAsgs~ 626 (630)
+++-+.-...+.+. ..+++.-+...+...+++.++
T Consensus 159 ~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss~ 196 (418)
T PF14727_consen 159 FFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSSW 196 (418)
T ss_pred EEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCce
No 471
>PRK14361 Maf-like protein; Provisional
Probab=21.59 E-value=54 Score=32.53 Aligned_cols=18 Identities=39% Similarity=0.560 Sum_probs=15.5
Q ss_pred cchHHHHHHHHHHhCCCC
Q 006825 77 ISVSERRSRLLREMGLSH 94 (630)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~ 94 (630)
+|=|-||+.||++||+.-
T Consensus 4 AS~SprR~elL~~~g~~f 21 (187)
T PRK14361 4 ASGSPRRRELLENLGVPF 21 (187)
T ss_pred ccCCHHHHHHHHHCCCCc
Confidence 567899999999999953
No 472
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=21.56 E-value=4.4e+02 Score=25.30 Aligned_cols=30 Identities=20% Similarity=0.315 Sum_probs=25.1
Q ss_pred CCEEEEEEcCC-------CeEEEEECCCcEEEEeCCC
Q 006825 568 DDVLDLSWSKS-------QHLLSSSMDKTVRLWHLSS 597 (630)
Q Consensus 568 ~~V~sLafSPd-------~~LaSgS~DgtVrIWDl~t 597 (630)
..|..++|||. -+|+.-..++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 37899999994 3788889999999998763
No 473
>PRK04425 Maf-like protein; Reviewed
Probab=21.45 E-value=52 Score=32.88 Aligned_cols=18 Identities=17% Similarity=0.246 Sum_probs=15.6
Q ss_pred cchHHHHHHHHHHhCCCC
Q 006825 77 ISVSERRSRLLREMGLSH 94 (630)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~ 94 (630)
+|=|-||+.||++||+.-
T Consensus 10 AS~SprR~elL~~~g~~f 27 (196)
T PRK04425 10 GTSSVFRREQMERLGIAF 27 (196)
T ss_pred eCCCHHHHHHHHHCCCCe
Confidence 567899999999999864
No 474
>PRK04694 Maf-like protein; Reviewed
Probab=21.42 E-value=55 Score=32.56 Aligned_cols=17 Identities=35% Similarity=0.505 Sum_probs=15.0
Q ss_pred cchHHHHHHHHHHhCCC
Q 006825 77 ISVSERRSRLLREMGLS 93 (630)
Q Consensus 77 ~~~~~~~~~~~~~~~~~ 93 (630)
+|=|-||+.||++||+.
T Consensus 5 AS~SprR~elL~~~g~~ 21 (190)
T PRK04694 5 ASRSPRRRELLQRLDVP 21 (190)
T ss_pred cCCCHHHHHHHHHCCCC
Confidence 56788999999999995
No 475
>PRK14362 Maf-like protein; Provisional
Probab=20.92 E-value=55 Score=33.06 Aligned_cols=17 Identities=47% Similarity=0.643 Sum_probs=15.4
Q ss_pred cchHHHHHHHHHHhCCC
Q 006825 77 ISVSERRSRLLREMGLS 93 (630)
Q Consensus 77 ~~~~~~~~~~~~~~~~~ 93 (630)
+|=|-||+.||++||+.
T Consensus 17 AS~SprR~eLL~~~g~~ 33 (207)
T PRK14362 17 ASGSPRRREFLEQMGLP 33 (207)
T ss_pred eCCCHHHHHHHHHCCCC
Confidence 67789999999999995
No 476
>PRK00884 Maf-like protein; Reviewed
Probab=20.83 E-value=56 Score=32.64 Aligned_cols=18 Identities=33% Similarity=0.388 Sum_probs=15.6
Q ss_pred cchHHHHHHHHHHhCCCC
Q 006825 77 ISVSERRSRLLREMGLSH 94 (630)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~ 94 (630)
+|=|-||+.||++||+.-
T Consensus 7 AS~SprR~elL~~~g~~f 24 (194)
T PRK00884 7 ASTSPYRRALLEKLQLPF 24 (194)
T ss_pred eCCCHHHHHHHHHCCCCC
Confidence 567899999999999964
No 477
>PHA03283 envelope glycoprotein E; Provisional
Probab=20.61 E-value=1.1e+02 Score=34.89 Aligned_cols=12 Identities=17% Similarity=0.675 Sum_probs=10.4
Q ss_pred cccceeeecCCc
Q 006825 66 STKYDVWISEPI 77 (630)
Q Consensus 66 ~~~~~~~~~~~~ 77 (630)
-+.|+||.-+|.
T Consensus 502 rsgf~vwfrd~~ 513 (542)
T PHA03283 502 RSGFKVWFRDTE 513 (542)
T ss_pred CCCceEEecCCh
Confidence 589999999984
No 478
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.16 E-value=1.1e+03 Score=25.40 Aligned_cols=128 Identities=12% Similarity=0.032 Sum_probs=78.3
Q ss_pred ecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcc
Q 006825 336 VGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRR 412 (630)
Q Consensus 336 ~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~ 412 (630)
.|-..-|.+|.|.| .|.+..+-+... ||=...|..+++....-..---++++.-+|++.++--.+
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~i-VElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~----------- 149 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAI-VELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERD----------- 149 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceE-EEEecCCceEEEecccccCChhHeEEecCCEEEEEehhc-----------
Confidence 45445599999999 677777777777 888888998887764333444456777666665532111
Q ss_pred eEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCC
Q 006825 413 SSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVES 488 (630)
Q Consensus 413 ~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg 488 (630)
..-.+++-..+.++...+.. + ..+.....-......++|.|..+.|..+=+-.-++|+.+...
T Consensus 150 -------~~l~~~~vd~~t~~~~~~~~--~----i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~ 212 (316)
T COG3204 150 -------RALYLFTVDADTTVISAKVQ--K----IPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQS 212 (316)
T ss_pred -------ceEEEEEEcCCccEEeccce--E----EeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecC
Confidence 11112333333333322211 1 112222222566789999998888888888888888887643
No 479
>PRK00032 Maf-like protein; Reviewed
Probab=20.11 E-value=59 Score=32.35 Aligned_cols=18 Identities=39% Similarity=0.564 Sum_probs=15.4
Q ss_pred cchHHHHHHHHHHhCCCC
Q 006825 77 ISVSERRSRLLREMGLSH 94 (630)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~ 94 (630)
+|=|-||+.||++||+.-
T Consensus 7 AS~SprR~elL~~~g~~f 24 (190)
T PRK00032 7 ASGSPRRRELLTQLGVPF 24 (190)
T ss_pred eCCCHHHHHHHHHCCCCe
Confidence 567899999999999953
Done!