Query 006825
Match_columns 630
No_of_seqs 443 out of 3682
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 09:58:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006825.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006825hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nr0_A Actin interacting prote 100.0 8.5E-38 2.9E-42 353.2 38.5 340 261-627 65-557 (611)
2 2ynn_A Coatomer subunit beta'; 100.0 2E-37 6.8E-42 318.8 35.0 265 330-627 4-293 (304)
3 1vyh_C Platelet-activating fac 100.0 4E-37 1.4E-41 330.8 35.4 261 332-627 101-401 (410)
4 1nr0_A Actin interacting prote 100.0 1.4E-36 4.8E-41 343.2 41.5 293 317-625 42-385 (611)
5 2ymu_A WD-40 repeat protein; u 100.0 3.6E-36 1.2E-40 332.1 41.4 306 260-627 226-570 (577)
6 1got_B GT-beta; complex (GTP-b 100.0 3.5E-36 1.2E-40 314.3 34.8 264 329-627 45-333 (340)
7 3ow8_A WD repeat-containing pr 100.0 6.5E-36 2.2E-40 311.4 34.1 260 333-627 26-311 (321)
8 1vyh_C Platelet-activating fac 100.0 5.1E-36 1.8E-40 322.2 31.3 239 318-596 134-410 (410)
9 4gqb_B Methylosome protein 50; 100.0 9.3E-36 3.2E-40 314.7 30.4 232 335-627 78-321 (344)
10 2pbi_B Guanine nucleotide-bind 100.0 5.7E-35 1.9E-39 308.0 35.6 261 332-627 57-347 (354)
11 4g56_B MGC81050 protein; prote 100.0 1.1E-35 3.6E-40 314.3 28.7 275 259-627 46-333 (357)
12 3iz6_a 40S ribosomal protein R 100.0 2E-35 6.9E-40 313.7 29.2 265 333-627 60-365 (380)
13 2ymu_A WD-40 repeat protein; u 100.0 4E-34 1.4E-38 315.7 40.7 306 260-627 185-529 (577)
14 3ow8_A WD repeat-containing pr 100.0 8.9E-35 3E-39 302.8 32.5 229 333-596 74-320 (321)
15 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.2E-34 4.1E-39 303.7 31.6 289 260-605 21-343 (345)
16 2hes_X YDR267CP; beta-propelle 100.0 3.7E-34 1.3E-38 298.2 33.3 276 331-627 6-318 (330)
17 1got_B GT-beta; complex (GTP-b 100.0 9.2E-34 3.2E-38 296.0 36.2 257 260-594 60-340 (340)
18 4gqb_B Methylosome protein 50; 100.0 1.6E-34 5.5E-39 305.3 29.2 221 316-600 105-334 (344)
19 3fm0_A Protein CIAO1; WDR39,SG 100.0 6E-34 2E-38 298.4 32.7 284 331-627 7-325 (345)
20 2xzm_R RACK1; ribosome, transl 100.0 1.1E-33 3.7E-38 295.4 30.8 240 333-598 70-341 (343)
21 4ery_A WD repeat-containing pr 100.0 6E-33 2.1E-37 283.8 34.9 259 333-625 17-298 (312)
22 3frx_A Guanine nucleotide-bind 100.0 5.2E-33 1.8E-37 288.1 33.3 231 333-628 11-259 (319)
23 2ynn_A Coatomer subunit beta'; 100.0 6.4E-33 2.2E-37 285.1 33.5 240 318-597 39-302 (304)
24 3frx_A Guanine nucleotide-bind 100.0 6E-33 2.1E-37 287.7 32.5 230 332-598 58-318 (319)
25 2pbi_B Guanine nucleotide-bind 100.0 1.6E-32 5.5E-37 289.2 34.2 239 318-594 90-354 (354)
26 1erj_A Transcriptional repress 100.0 4.1E-32 1.4E-36 289.5 36.9 275 334-627 59-379 (393)
27 1erj_A Transcriptional repress 100.0 1.2E-32 4E-37 293.7 32.6 289 260-598 69-390 (393)
28 3iz6_a 40S ribosomal protein R 100.0 1.6E-33 5.5E-38 299.0 25.5 268 261-599 72-377 (380)
29 4aow_A Guanine nucleotide-bind 100.0 7.7E-32 2.6E-36 275.4 34.7 260 333-627 32-327 (340)
30 1r5m_A SIR4-interacting protei 100.0 3.6E-32 1.2E-36 284.8 32.8 305 260-627 50-415 (425)
31 3sfz_A APAF-1, apoptotic pepti 100.0 1.7E-32 5.8E-37 331.1 33.5 338 260-627 620-1148(1249)
32 2xzm_R RACK1; ribosome, transl 100.0 1.3E-31 4.4E-36 279.7 33.7 236 329-626 11-275 (343)
33 2hes_X YDR267CP; beta-propelle 100.0 9.5E-32 3.2E-36 280.0 31.3 228 337-597 56-328 (330)
34 4g56_B MGC81050 protein; prote 100.0 1.9E-32 6.6E-37 289.3 26.4 203 335-598 135-344 (357)
35 1gxr_A ESG1, transducin-like e 100.0 3.9E-30 1.4E-34 261.3 40.5 298 259-627 13-327 (337)
36 3odt_A Protein DOA1; ubiquitin 100.0 8.8E-31 3E-35 263.9 34.4 255 332-625 11-285 (313)
37 4ery_A WD repeat-containing pr 100.0 6.6E-31 2.2E-35 268.7 33.7 239 318-596 49-311 (312)
38 2pm7_B Protein transport prote 100.0 3.1E-31 1.1E-35 271.7 31.4 235 333-627 3-275 (297)
39 3vl1_A 26S proteasome regulato 100.0 1.7E-31 5.8E-36 282.5 29.1 284 259-627 60-410 (420)
40 4aow_A Guanine nucleotide-bind 100.0 1.3E-30 4.3E-35 266.4 34.2 276 259-599 42-339 (340)
41 2oaj_A Protein SNI1; WD40 repe 100.0 5.3E-31 1.8E-35 312.4 34.8 309 260-614 103-687 (902)
42 2pm7_B Protein transport prote 100.0 6.3E-31 2.2E-35 269.4 29.6 239 260-596 14-284 (297)
43 2oaj_A Protein SNI1; WD40 repe 100.0 9.7E-31 3.3E-35 310.2 34.1 348 261-627 64-651 (902)
44 2pm9_A Protein WEB1, protein t 100.0 2.8E-31 9.6E-36 279.4 26.2 257 336-627 64-404 (416)
45 3zwl_B Eukaryotic translation 100.0 6E-30 2E-34 262.8 33.8 260 316-602 56-351 (369)
46 3dm0_A Maltose-binding peripla 100.0 2.8E-30 9.7E-35 295.1 34.6 278 299-596 393-692 (694)
47 3v7d_B Cell division control p 100.0 9.2E-30 3.2E-34 274.1 36.6 260 312-616 141-443 (464)
48 1sq9_A Antiviral protein SKI8; 100.0 2.6E-30 8.9E-35 270.8 31.2 265 332-627 9-385 (397)
49 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.8E-29 6.3E-34 271.5 38.6 266 316-628 141-429 (445)
50 3dwl_C Actin-related protein 2 100.0 4.3E-31 1.5E-35 275.8 24.7 288 260-595 16-377 (377)
51 1pgu_A Actin interacting prote 100.0 1.4E-29 4.7E-34 279.7 37.8 331 260-627 69-562 (615)
52 3bg1_A Protein SEC13 homolog; 100.0 2.8E-31 9.7E-36 274.7 22.2 240 334-605 8-304 (316)
53 4gga_A P55CDC, cell division c 100.0 1.3E-29 4.5E-34 271.7 34.7 254 315-605 126-403 (420)
54 3dm0_A Maltose-binding peripla 100.0 6.1E-30 2.1E-34 292.4 34.0 262 333-627 376-683 (694)
55 4h5i_A Guanine nucleotide-exch 100.0 2E-30 6.7E-35 275.1 27.1 224 315-598 105-344 (365)
56 3ei3_B DNA damage-binding prot 100.0 4.2E-30 1.4E-34 269.8 28.7 258 333-626 67-372 (383)
57 3zwl_B Eukaryotic translation 100.0 4.2E-29 1.4E-33 256.5 35.3 264 333-627 26-336 (369)
58 4e54_B DNA damage-binding prot 100.0 1.6E-30 5.5E-35 280.5 25.8 265 333-629 113-423 (435)
59 1yfq_A Cell cycle arrest prote 100.0 8.5E-30 2.9E-34 261.0 28.8 266 331-628 3-314 (342)
60 3i2n_A WD repeat-containing pr 100.0 8.5E-30 2.9E-34 261.5 28.5 260 333-626 12-342 (357)
61 1k8k_C P40, ARP2/3 complex 41 100.0 8.6E-30 2.9E-34 263.5 28.2 260 333-599 46-363 (372)
62 4ggc_A P55CDC, cell division c 100.0 2.4E-29 8.3E-34 254.5 30.8 250 312-599 44-317 (318)
63 3mkq_A Coatomer beta'-subunit; 100.0 2E-29 6.8E-34 289.7 33.3 263 330-625 4-291 (814)
64 3dwl_C Actin-related protein 2 100.0 6.3E-31 2.2E-35 274.6 18.9 250 333-628 5-273 (377)
65 4h5i_A Guanine nucleotide-exch 100.0 1.8E-29 6E-34 267.7 30.2 238 334-628 68-334 (365)
66 2j04_B YDR362CP, TAU91; beta p 100.0 3.1E-30 1.1E-34 288.8 25.0 266 316-597 185-517 (524)
67 3sfz_A APAF-1, apoptotic pepti 100.0 1E-28 3.6E-33 298.0 39.1 319 291-624 617-1062(1249)
68 3gre_A Serine/threonine-protei 100.0 4.1E-30 1.4E-34 274.7 23.7 290 323-627 51-430 (437)
69 3v7d_B Cell division control p 100.0 7.5E-29 2.6E-33 267.0 33.4 260 333-626 115-411 (464)
70 4a11_B DNA excision repair pro 100.0 1.9E-29 6.6E-34 263.2 27.6 274 318-605 27-373 (408)
71 1k8k_C P40, ARP2/3 complex 41 100.0 3.6E-29 1.2E-33 258.8 29.2 262 334-627 3-351 (372)
72 3i2n_A WD repeat-containing pr 100.0 6.8E-29 2.3E-33 254.8 30.6 270 316-600 46-356 (357)
73 3vl1_A 26S proteasome regulato 100.0 1E-28 3.6E-33 261.1 32.3 258 300-627 67-355 (420)
74 3dw8_B Serine/threonine-protei 100.0 1.7E-29 5.8E-34 268.9 26.3 257 336-628 25-438 (447)
75 4e54_B DNA damage-binding prot 100.0 1.8E-29 6.3E-34 272.2 25.9 267 316-601 144-434 (435)
76 1pgu_A Actin interacting prote 100.0 3.4E-28 1.2E-32 268.5 36.1 248 333-615 57-347 (615)
77 3ei3_B DNA damage-binding prot 100.0 9.5E-29 3.2E-33 259.5 29.8 233 335-597 114-382 (383)
78 3f3f_A Nucleoporin SEH1; struc 100.0 1.2E-28 4E-33 249.2 28.6 267 333-604 5-344 (351)
79 4ggc_A P55CDC, cell division c 100.0 5.4E-28 1.8E-32 244.6 33.1 257 342-627 28-305 (318)
80 2pm9_A Protein WEB1, protein t 100.0 2.2E-29 7.5E-34 264.9 23.8 266 338-627 11-327 (416)
81 2ovr_B FBW7, F-BOX/WD repeat p 100.0 6.9E-28 2.4E-32 259.2 35.9 278 262-597 124-442 (445)
82 1r5m_A SIR4-interacting protei 100.0 1.3E-28 4.4E-33 257.8 29.4 259 334-627 40-351 (425)
83 3jrp_A Fusion protein of prote 100.0 1.6E-28 5.4E-33 253.6 28.8 241 333-602 5-292 (379)
84 2j04_B YDR362CP, TAU91; beta p 100.0 1.4E-29 4.8E-34 283.5 22.3 212 350-595 175-426 (524)
85 3k26_A Polycomb protein EED; W 100.0 5.7E-29 2E-33 255.7 24.8 256 315-597 45-366 (366)
86 1sq9_A Antiviral protein SKI8; 100.0 3.2E-28 1.1E-32 254.9 30.9 249 316-599 38-397 (397)
87 4aez_A CDC20, WD repeat-contai 100.0 8.9E-28 3E-32 255.6 32.9 259 335-627 87-370 (401)
88 3mmy_A MRNA export factor; mRN 100.0 4.6E-28 1.6E-32 248.6 29.0 250 330-627 30-336 (368)
89 3k26_A Polycomb protein EED; W 100.0 1E-28 3.4E-33 253.9 23.8 276 335-627 14-356 (366)
90 3odt_A Protein DOA1; ubiquitin 100.0 8.1E-28 2.8E-32 242.2 29.7 258 299-605 27-304 (313)
91 4aez_A CDC20, WD repeat-contai 100.0 9.6E-28 3.3E-32 255.3 31.6 247 316-605 115-388 (401)
92 1p22_A F-BOX/WD-repeat protein 100.0 6.8E-28 2.3E-32 259.2 30.3 253 316-605 155-422 (435)
93 4gga_A P55CDC, cell division c 100.0 1.7E-27 5.7E-32 255.4 33.2 256 342-627 108-385 (420)
94 2w18_A PALB2, fancn, partner a 100.0 2.7E-28 9.2E-33 258.9 26.4 257 293-595 44-355 (356)
95 1p22_A F-BOX/WD-repeat protein 100.0 9.1E-28 3.1E-32 258.3 30.9 255 333-627 127-404 (435)
96 3mkq_A Coatomer beta'-subunit; 100.0 2.4E-27 8.1E-32 272.4 34.4 243 316-598 37-303 (814)
97 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3.9E-27 1.3E-31 254.8 32.4 231 335-625 98-373 (450)
98 1gxr_A ESG1, transducin-like e 100.0 2.3E-26 7.7E-31 233.6 33.7 255 338-627 8-286 (337)
99 2aq5_A Coronin-1A; WD40 repeat 100.0 3.5E-27 1.2E-31 250.3 27.9 230 331-623 73-330 (402)
100 3bg1_A Protein SEC13 homolog; 100.0 8.5E-28 2.9E-32 248.6 21.7 223 377-627 10-283 (316)
101 3dw8_B Serine/threonine-protei 100.0 3.6E-27 1.2E-31 250.9 26.4 296 260-596 33-445 (447)
102 2j04_A TAU60, YPL007P, hypothe 100.0 3.5E-27 1.2E-31 264.5 23.3 279 259-627 19-351 (588)
103 3gre_A Serine/threonine-protei 99.9 5.2E-27 1.8E-31 250.6 21.9 281 260-594 68-437 (437)
104 2xyi_A Probable histone-bindin 99.9 3.9E-26 1.3E-30 246.1 28.8 236 333-627 122-400 (430)
105 4gq1_A NUP37; propeller, trans 99.9 3.5E-27 1.2E-31 251.9 20.1 254 335-629 85-382 (393)
106 1yfq_A Cell cycle arrest prote 99.9 1.3E-25 4.5E-30 229.8 29.9 225 333-594 50-321 (342)
107 3f3f_A Nucleoporin SEH1; struc 99.9 9E-26 3.1E-30 228.0 27.0 230 374-627 6-327 (351)
108 3jrp_A Fusion protein of prote 99.9 8E-26 2.8E-30 233.3 26.7 229 369-627 1-277 (379)
109 3lrv_A PRE-mRNA-splicing facto 99.9 8.7E-26 3E-30 235.2 25.1 216 312-599 57-294 (343)
110 4gq1_A NUP37; propeller, trans 99.9 7.8E-26 2.7E-30 241.5 23.7 221 316-595 113-387 (393)
111 2j04_A TAU60, YPL007P, hypothe 99.9 1.3E-25 4.6E-30 251.7 25.1 244 339-626 15-287 (588)
112 3vu4_A KMHSV2; beta-propeller 99.9 4E-25 1.4E-29 232.8 27.3 232 351-597 74-336 (355)
113 2aq5_A Coronin-1A; WD40 repeat 99.9 3.5E-25 1.2E-29 234.9 26.4 225 342-623 37-284 (402)
114 3jro_A Fusion protein of prote 99.9 6.6E-26 2.3E-30 262.9 22.5 237 333-598 3-286 (753)
115 3mmy_A MRNA export factor; mRN 99.9 3.1E-25 1.1E-29 227.5 24.9 228 333-595 80-344 (368)
116 2xyi_A Probable histone-bindin 99.9 1.8E-24 6.1E-29 233.1 30.3 222 332-598 174-411 (430)
117 4a11_B DNA excision repair pro 99.9 2.9E-24 1E-28 223.9 29.9 253 355-627 20-355 (408)
118 1l0q_A Surface layer protein; 99.9 3.5E-23 1.2E-27 216.9 34.4 253 311-609 10-288 (391)
119 3lrv_A PRE-mRNA-splicing facto 99.9 2.8E-24 9.7E-29 223.7 25.7 242 285-596 52-332 (343)
120 2vdu_B TRNA (guanine-N(7)-)-me 99.9 4.2E-24 1.4E-28 231.0 27.8 254 340-625 5-326 (450)
121 3bws_A Protein LP49; two-domai 99.9 6.2E-23 2.1E-27 218.0 34.4 244 316-625 146-419 (433)
122 2w18_A PALB2, fancn, partner a 99.9 1.9E-23 6.3E-28 221.8 28.6 253 351-627 57-347 (356)
123 3vu4_A KMHSV2; beta-propeller 99.9 1E-22 3.6E-27 214.3 27.3 246 318-627 3-261 (355)
124 3jro_A Fusion protein of prote 99.9 2.1E-23 7.2E-28 241.9 21.2 224 374-627 4-275 (753)
125 2hqs_A Protein TOLB; TOLB, PAL 99.9 7.8E-22 2.7E-26 212.9 28.6 260 315-617 94-408 (415)
126 3bws_A Protein LP49; two-domai 99.9 2.7E-21 9.3E-26 205.3 31.0 226 333-625 117-363 (433)
127 1l0q_A Surface layer protein; 99.9 7E-21 2.4E-25 199.4 31.7 234 351-624 5-262 (391)
128 2ojh_A Uncharacterized protein 99.9 3.3E-20 1.1E-24 183.4 25.3 244 316-627 24-292 (297)
129 2hqs_A Protein TOLB; TOLB, PAL 99.8 5.3E-19 1.8E-23 190.7 30.9 219 315-578 160-408 (415)
130 1nir_A Nitrite reductase; hemo 99.8 9.2E-19 3.2E-23 196.4 28.5 271 315-624 160-496 (543)
131 1nir_A Nitrite reductase; hemo 99.8 1.4E-18 4.9E-23 194.8 29.2 223 315-605 249-522 (543)
132 2ecf_A Dipeptidyl peptidase IV 99.8 5.9E-19 2E-23 201.5 25.6 317 259-624 40-442 (741)
133 1xfd_A DIP, dipeptidyl aminope 99.8 1.1E-18 3.7E-23 198.5 25.3 271 316-624 93-427 (723)
134 1k32_A Tricorn protease; prote 99.8 2E-18 6.9E-23 206.7 28.9 253 333-626 197-491 (1045)
135 3vgz_A Uncharacterized protein 99.8 5.2E-17 1.8E-21 166.6 34.1 224 342-624 91-331 (353)
136 2oit_A Nucleoporin 214KDA; NH2 99.8 2.5E-18 8.6E-23 187.3 21.3 205 339-598 36-279 (434)
137 2z3z_A Dipeptidyl aminopeptida 99.8 1.8E-17 6E-22 188.5 27.4 254 340-624 82-418 (706)
138 1xfd_A DIP, dipeptidyl aminope 99.8 9.4E-19 3.2E-23 199.0 15.6 268 324-624 2-323 (723)
139 2ecf_A Dipeptidyl peptidase IV 99.8 5.5E-18 1.9E-22 193.5 21.6 265 324-624 20-397 (741)
140 2ojh_A Uncharacterized protein 99.8 1.6E-17 5.5E-22 164.1 21.8 208 351-626 15-236 (297)
141 3scy_A Hypothetical bacterial 99.8 8.2E-16 2.8E-20 160.1 32.8 211 351-614 113-358 (361)
142 1ri6_A Putative isomerase YBHE 99.8 6.8E-16 2.3E-20 156.9 30.0 215 341-614 85-329 (343)
143 1pby_B Quinohemoprotein amine 99.8 1.3E-16 4.4E-21 161.9 24.2 232 350-625 3-298 (337)
144 3u4y_A Uncharacterized protein 99.7 9.2E-16 3.1E-20 156.7 30.2 245 315-624 21-290 (331)
145 3o4h_A Acylamino-acid-releasin 99.7 2E-17 6.9E-22 184.4 18.2 241 339-625 21-300 (582)
146 1pby_B Quinohemoprotein amine 99.7 6.1E-16 2.1E-20 156.9 27.6 253 315-605 12-318 (337)
147 1ri6_A Putative isomerase YBHE 99.7 1.3E-15 4.4E-20 154.9 29.4 249 316-625 17-295 (343)
148 1k32_A Tricorn protease; prote 99.7 4.5E-16 1.5E-20 186.4 30.1 227 358-626 183-440 (1045)
149 3u4y_A Uncharacterized protein 99.7 7.9E-16 2.7E-20 157.2 27.0 211 350-624 12-238 (331)
150 3hfq_A Uncharacterized protein 99.7 1.8E-15 6.2E-20 156.4 29.7 251 313-625 17-304 (347)
151 3hfq_A Uncharacterized protein 99.7 4.1E-15 1.4E-19 153.7 32.2 212 335-602 81-324 (347)
152 2oit_A Nucleoporin 214KDA; NH2 99.7 8.3E-17 2.9E-21 175.3 18.1 143 454-622 90-256 (434)
153 3o4h_A Acylamino-acid-releasin 99.7 2.6E-16 8.8E-21 175.5 21.0 177 350-597 125-315 (582)
154 1jmx_B Amine dehydrogenase; ox 99.7 1.6E-15 5.5E-20 154.9 25.1 235 316-605 23-333 (349)
155 2z3z_A Dipeptidyl aminopeptida 99.7 2.4E-15 8.2E-20 170.9 27.5 251 316-607 103-444 (706)
156 1jmx_B Amine dehydrogenase; ox 99.7 1.4E-15 4.6E-20 155.4 22.6 234 350-625 13-313 (349)
157 3vgz_A Uncharacterized protein 99.7 1.6E-14 5.5E-19 147.9 27.9 217 340-621 41-286 (353)
158 1z68_A Fibroblast activation p 99.6 5E-16 1.7E-20 177.1 13.4 251 344-624 20-373 (719)
159 1jof_A Carboxy-CIS,CIS-muconat 99.6 2.9E-14 9.9E-19 149.9 24.5 188 356-598 117-342 (365)
160 3azo_A Aminopeptidase; POP fam 99.6 1.6E-14 5.3E-19 163.0 22.7 258 333-625 17-355 (662)
161 1z68_A Fibroblast activation p 99.6 6.7E-15 2.3E-19 167.8 18.8 255 342-622 62-425 (719)
162 3scy_A Hypothetical bacterial 99.6 1.1E-12 3.7E-17 136.4 32.3 251 315-625 30-324 (361)
163 4a5s_A Dipeptidyl peptidase 4 99.6 1.1E-14 3.8E-19 168.0 18.2 258 324-614 2-370 (740)
164 4a5s_A Dipeptidyl peptidase 4 99.6 2.8E-13 9.4E-18 156.3 27.2 312 260-623 21-432 (740)
165 3pe7_A Oligogalacturonate lyas 99.6 4.3E-13 1.5E-17 139.9 25.5 259 318-625 64-369 (388)
166 3fvz_A Peptidyl-glycine alpha- 99.6 1.8E-12 6.3E-17 134.5 28.8 228 340-625 24-310 (329)
167 1q7f_A NHL, brain tumor CG1071 99.6 9.8E-12 3.3E-16 124.9 32.7 198 337-599 74-282 (286)
168 1jof_A Carboxy-CIS,CIS-muconat 99.5 1.3E-12 4.4E-17 137.3 25.7 259 318-626 20-329 (365)
169 2oiz_A Aromatic amine dehydrog 99.5 4.6E-12 1.6E-16 134.1 28.4 259 315-619 32-360 (361)
170 1q7f_A NHL, brain tumor CG1071 99.5 2.8E-11 9.6E-16 121.5 31.6 226 336-625 26-269 (286)
171 3pe7_A Oligogalacturonate lyas 99.5 2E-12 6.9E-17 134.8 23.0 222 317-602 13-278 (388)
172 3azo_A Aminopeptidase; POP fam 99.5 5.1E-12 1.7E-16 142.4 27.8 220 351-604 94-376 (662)
173 2gop_A Trilobed protease; beta 99.5 4.7E-12 1.6E-16 130.2 24.7 255 316-623 45-317 (347)
174 3c5m_A Oligogalacturonate lyas 99.5 3.8E-12 1.3E-16 132.3 21.5 232 344-625 85-369 (396)
175 3fvz_A Peptidyl-glycine alpha- 99.4 7E-11 2.4E-15 122.6 29.2 221 316-597 71-322 (329)
176 2xdw_A Prolyl endopeptidase; a 99.4 4.7E-11 1.6E-15 136.9 27.4 203 342-599 173-416 (710)
177 2xdw_A Prolyl endopeptidase; a 99.4 9E-11 3.1E-15 134.6 29.4 241 336-622 121-395 (710)
178 3e5z_A Putative gluconolactona 99.4 1E-10 3.5E-15 118.4 25.8 223 333-624 21-274 (296)
179 2dg1_A DRP35, lactonase; beta 99.4 5.9E-10 2E-14 114.2 30.9 226 333-621 38-294 (333)
180 3no2_A Uncharacterized protein 99.4 1.2E-10 4.2E-15 119.0 25.6 211 350-624 7-230 (276)
181 3c5m_A Oligogalacturonate lyas 99.3 7.5E-12 2.6E-16 130.1 15.0 241 318-624 14-300 (396)
182 2bkl_A Prolyl endopeptidase; m 99.3 3.2E-11 1.1E-15 138.1 20.2 245 260-600 125-400 (695)
183 2dg1_A DRP35, lactonase; beta 99.3 5.5E-10 1.9E-14 114.4 25.6 220 340-624 6-250 (333)
184 3e5z_A Putative gluconolactona 99.3 9.6E-10 3.3E-14 111.2 26.5 211 335-600 64-289 (296)
185 2gop_A Trilobed protease; beta 99.3 5.1E-10 1.7E-14 114.9 24.3 177 358-608 152-341 (347)
186 2bkl_A Prolyl endopeptidase; m 99.3 4.4E-10 1.5E-14 128.7 24.6 235 336-622 117-378 (695)
187 3dsm_A Uncharacterized protein 99.3 2.8E-09 9.5E-14 110.8 28.3 272 303-614 4-318 (328)
188 3no2_A Uncharacterized protein 99.2 2.3E-09 8E-14 109.4 25.6 223 316-605 17-260 (276)
189 2oiz_A Aromatic amine dehydrog 99.2 2.5E-09 8.4E-14 113.1 23.7 231 355-625 28-323 (361)
190 2z2n_A Virginiamycin B lyase; 99.2 1.7E-07 5.7E-12 93.2 35.2 250 336-622 11-281 (299)
191 1yr2_A Prolyl oligopeptidase; 99.1 3.9E-09 1.3E-13 121.8 24.2 247 260-599 167-443 (741)
192 1rwi_B Serine/threonine-protei 99.1 1E-08 3.5E-13 101.3 24.0 196 340-600 67-267 (270)
193 1pjx_A Dfpase, DIISOPROPYLFLUO 99.1 1.7E-08 5.8E-13 101.8 26.0 233 334-597 12-299 (314)
194 1rwi_B Serine/threonine-protei 99.1 1.1E-08 3.8E-13 101.0 24.1 219 341-625 25-252 (270)
195 1yr2_A Prolyl oligopeptidase; 99.1 1.8E-08 6.3E-13 116.1 26.1 236 337-621 160-421 (741)
196 2qc5_A Streptogramin B lactona 99.0 1.1E-06 3.9E-11 87.1 33.0 249 339-624 19-289 (300)
197 2z2n_A Virginiamycin B lyase; 99.0 2.3E-06 8E-11 84.8 35.2 224 338-599 55-297 (299)
198 3g4e_A Regucalcin; six bladed 99.0 3.8E-07 1.3E-11 92.9 29.5 237 290-587 14-263 (297)
199 1xip_A Nucleoporin NUP159; bet 99.0 8.1E-09 2.8E-13 111.4 17.4 131 454-622 86-229 (388)
200 3g4e_A Regucalcin; six bladed 98.9 4.2E-07 1.4E-11 92.6 27.9 204 351-620 28-255 (297)
201 1qks_A Cytochrome CD1 nitrite 98.9 1E-06 3.4E-11 99.4 33.1 261 297-624 162-457 (567)
202 3iuj_A Prolyl endopeptidase; h 98.9 1E-07 3.5E-12 109.3 25.1 245 261-600 134-408 (693)
203 1xip_A Nucleoporin NUP159; bet 98.9 1.3E-08 4.6E-13 109.6 16.6 166 341-583 39-230 (388)
204 3hrp_A Uncharacterized protein 98.9 3.4E-07 1.2E-11 98.7 27.4 228 340-625 131-398 (409)
205 2mad_H Methylamine dehydrogena 98.9 3E-06 1E-10 90.3 33.2 265 315-604 48-357 (373)
206 1qks_A Cytochrome CD1 nitrite 98.9 5.2E-07 1.8E-11 101.8 27.1 193 351-605 170-381 (567)
207 2qe8_A Uncharacterized protein 98.8 2.4E-07 8.3E-12 96.5 21.2 224 337-625 64-309 (343)
208 3dsm_A Uncharacterized protein 98.8 4E-07 1.4E-11 94.4 22.4 207 355-623 14-241 (328)
209 2ghs_A AGR_C_1268P; regucalcin 98.8 3.5E-06 1.2E-10 87.2 29.5 227 293-587 53-293 (326)
210 1pjx_A Dfpase, DIISOPROPYLFLUO 98.8 9.3E-07 3.2E-11 88.9 23.2 180 410-619 69-280 (314)
211 2qc5_A Streptogramin B lactona 98.8 1.7E-05 5.8E-10 78.5 31.7 221 339-595 61-298 (300)
212 3dr2_A Exported gluconolactona 98.8 1.7E-06 5.8E-11 88.2 24.4 216 338-592 43-302 (305)
213 2ghs_A AGR_C_1268P; regucalcin 98.8 6.7E-06 2.3E-10 85.1 29.2 206 351-621 64-286 (326)
214 3iuj_A Prolyl endopeptidase; h 98.7 1.2E-06 4.1E-11 100.4 25.6 224 336-614 125-377 (693)
215 2hz6_A Endoplasmic reticulum t 98.7 5.3E-09 1.8E-13 111.1 4.6 197 350-619 11-216 (369)
216 3hrp_A Uncharacterized protein 98.6 1.3E-05 4.4E-10 86.3 27.4 231 299-595 140-408 (409)
217 3sjl_D Methylamine dehydrogena 98.6 6.9E-06 2.4E-10 88.4 24.8 282 299-605 42-371 (386)
218 1mda_H Methylamine dehydrogena 98.5 6.3E-06 2.1E-10 88.1 22.1 274 301-614 32-363 (368)
219 3c75_H MADH, methylamine dehyd 98.5 1.2E-05 4E-10 87.7 23.0 256 315-604 100-409 (426)
220 1yiq_A Quinohemoprotein alcoho 98.5 1.9E-05 6.3E-10 91.0 24.7 165 432-605 276-513 (689)
221 3dr2_A Exported gluconolactona 98.4 2.7E-05 9.3E-10 79.2 22.2 184 369-599 34-226 (305)
222 1kb0_A Quinohemoprotein alcoho 98.4 2.6E-05 8.9E-10 89.5 23.2 167 432-605 284-515 (677)
223 2mad_H Methylamine dehydrogena 98.4 0.00014 4.7E-09 77.4 27.0 232 359-623 48-335 (373)
224 3hxj_A Pyrrolo-quinoline quino 98.2 3E-05 1E-09 78.4 16.5 253 350-622 32-310 (330)
225 3hxj_A Pyrrolo-quinoline quino 98.2 9.3E-05 3.2E-09 74.7 19.5 195 350-594 109-321 (330)
226 2hz6_A Endoplasmic reticulum t 98.1 3.5E-07 1.2E-11 97.0 0.9 145 421-605 9-157 (369)
227 3sjl_D Methylamine dehydrogena 98.1 0.00012 4E-09 78.8 20.5 231 357-619 58-343 (386)
228 1kb0_A Quinohemoprotein alcoho 98.1 0.00015 5.2E-09 83.1 21.9 146 460-610 246-479 (677)
229 3c75_H MADH, methylamine dehyd 98.1 0.00026 8.9E-09 77.0 22.4 238 358-624 99-388 (426)
230 1npe_A Nidogen, entactin; glyc 98.1 0.0083 2.8E-07 59.3 31.5 202 341-605 37-246 (267)
231 2qe8_A Uncharacterized protein 98.1 0.00014 4.6E-09 75.6 19.1 203 316-527 95-314 (343)
232 1yiq_A Quinohemoprotein alcoho 98.1 0.00024 8.1E-09 81.7 22.8 154 350-536 123-340 (689)
233 3q7m_A Lipoprotein YFGL, BAMB; 98.0 0.001 3.6E-08 69.0 25.0 214 350-605 105-345 (376)
234 2iwa_A Glutamine cyclotransfer 97.9 0.0011 3.9E-08 67.6 21.1 197 340-598 21-238 (266)
235 1mda_H Methylamine dehydrogena 97.9 0.00019 6.6E-09 76.5 15.8 101 359-487 47-158 (368)
236 3q7m_A Lipoprotein YFGL, BAMB; 97.8 0.0029 1E-07 65.6 23.5 203 350-594 145-375 (376)
237 3nok_A Glutaminyl cyclase; bet 97.8 0.002 6.7E-08 65.8 20.1 183 338-584 53-253 (268)
238 3nol_A Glutamine cyclotransfer 97.7 0.0018 6.1E-08 65.9 19.3 185 338-586 41-244 (262)
239 1kv9_A Type II quinohemoprotei 97.7 0.0036 1.2E-07 71.6 23.0 54 551-605 441-496 (668)
240 2ece_A 462AA long hypothetical 97.6 0.0045 1.5E-07 67.7 21.3 143 356-522 226-399 (462)
241 1npe_A Nidogen, entactin; glyc 97.6 0.036 1.2E-06 54.6 26.0 157 425-614 52-215 (267)
242 2ece_A 462AA long hypothetical 97.5 0.0077 2.6E-07 65.9 22.2 231 350-625 98-399 (462)
243 1kv9_A Type II quinohemoprotei 97.5 0.0037 1.3E-07 71.5 20.7 73 460-535 233-334 (668)
244 4a2l_A BT_4663, two-component 97.5 0.24 8.2E-06 57.0 36.7 258 339-624 214-516 (795)
245 4a2l_A BT_4663, two-component 97.5 0.25 8.7E-06 56.8 38.0 255 339-624 262-561 (795)
246 3mbr_X Glutamine cyclotransfer 97.5 0.013 4.4E-07 59.0 21.4 149 339-527 20-172 (243)
247 1fwx_A Nitrous oxide reductase 97.4 0.028 9.4E-07 63.4 24.8 236 351-625 105-406 (595)
248 2fp8_A Strictosidine synthase; 97.4 0.037 1.3E-06 56.2 23.6 219 343-597 22-313 (322)
249 2iwa_A Glutamine cyclotransfer 97.3 0.012 4.2E-07 59.8 19.5 175 314-527 44-230 (266)
250 2ad6_A Methanol dehydrogenase 97.3 0.042 1.4E-06 61.6 25.6 137 465-605 310-502 (571)
251 2xe4_A Oligopeptidase B; hydro 97.3 0.013 4.4E-07 67.8 21.8 212 325-593 158-394 (751)
252 2xe4_A Oligopeptidase B; hydro 97.2 0.015 5.1E-07 67.2 20.1 166 378-597 170-354 (751)
253 3v64_C Agrin; beta propeller, 97.0 0.34 1.2E-05 50.4 27.1 148 425-605 132-283 (349)
254 1flg_A Protein (quinoprotein e 97.0 0.25 8.5E-06 55.5 27.6 54 551-605 469-524 (582)
255 1fwx_A Nitrous oxide reductase 97.0 0.012 4.1E-07 66.3 16.2 161 357-533 174-360 (595)
256 3v65_B Low-density lipoprotein 96.9 0.32 1.1E-05 51.4 26.4 148 425-605 175-326 (386)
257 3nol_A Glutamine cyclotransfer 96.9 0.063 2.2E-06 54.5 19.7 169 314-522 65-243 (262)
258 3sov_A LRP-6, low-density lipo 96.9 0.35 1.2E-05 49.8 25.6 148 425-605 95-246 (318)
259 2fp8_A Strictosidine synthase; 96.8 0.13 4.3E-06 52.2 21.6 189 424-623 33-245 (322)
260 3nok_A Glutaminyl cyclase; bet 96.8 0.046 1.6E-06 55.6 17.3 171 310-521 72-253 (268)
261 1w6s_A Methanol dehydrogenase 96.7 0.21 7E-06 56.5 24.3 167 431-605 278-511 (599)
262 3mbr_X Glutamine cyclotransfer 96.7 0.29 9.8E-06 49.1 22.6 166 314-521 43-221 (243)
263 3v9f_A Two-component system se 96.7 1.3 4.5E-05 50.7 34.8 253 339-624 257-557 (781)
264 3v64_C Agrin; beta propeller, 96.7 0.74 2.5E-05 47.8 26.5 157 425-614 89-252 (349)
265 3v9f_A Two-component system se 96.6 1.4 4.9E-05 50.4 35.3 250 339-619 312-595 (781)
266 1ijq_A LDL receptor, low-densi 96.6 0.81 2.8E-05 46.6 28.2 148 425-605 93-246 (316)
267 3v65_B Low-density lipoprotein 96.5 0.54 1.8E-05 49.6 24.5 193 358-614 96-295 (386)
268 3p5b_L Low density lipoprotein 96.5 1.1 3.9E-05 47.3 30.6 157 425-614 175-338 (400)
269 2ad6_A Methanol dehydrogenase 96.4 0.35 1.2E-05 54.0 23.4 26 350-376 117-142 (571)
270 3m0c_C LDL receptor, low-densi 96.4 1.1 3.8E-05 52.3 28.2 149 424-605 486-640 (791)
271 1k3i_A Galactose oxidase precu 96.4 0.16 5.6E-06 57.3 20.8 80 316-399 221-305 (656)
272 2p4o_A Hypothetical protein; p 96.3 0.98 3.4E-05 45.3 24.1 99 458-586 170-277 (306)
273 2xbg_A YCF48-like protein; pho 96.1 1.6 5.4E-05 44.7 26.9 212 380-624 35-267 (327)
274 2p4o_A Hypothetical protein; p 96.0 1.5 5E-05 44.0 24.4 120 368-529 21-142 (306)
275 1flg_A Protein (quinoprotein e 95.9 1.3 4.5E-05 49.5 24.8 26 350-376 119-144 (582)
276 3sov_A LRP-6, low-density lipo 95.9 1 3.5E-05 46.3 22.2 141 425-597 51-197 (318)
277 1w6s_A Methanol dehydrogenase 95.9 0.54 1.9E-05 53.0 21.5 25 351-376 124-148 (599)
278 1ijq_A LDL receptor, low-densi 95.9 1.8 6.1E-05 44.0 27.3 180 358-597 10-195 (316)
279 1n7d_A LDL receptor, low-densi 95.6 0.048 1.6E-06 62.7 11.3 157 425-614 469-632 (699)
280 4hw6_A Hypothetical protein, I 95.5 3.4 0.00012 44.3 25.4 165 358-528 162-368 (433)
281 3m0c_C LDL receptor, low-densi 95.3 4.1 0.00014 47.5 26.6 145 425-598 440-590 (791)
282 3qqz_A Putative uncharacterize 95.3 2.7 9.2E-05 42.1 25.2 210 335-594 22-250 (255)
283 2xbg_A YCF48-like protein; pho 95.3 3 0.0001 42.5 32.2 224 339-595 79-320 (327)
284 3amr_A 3-phytase; beta-propell 95.2 1.9 6.4E-05 45.5 21.1 195 355-605 47-272 (355)
285 3p5b_L Low density lipoprotein 94.9 4.7 0.00016 42.5 27.4 180 359-598 93-278 (400)
286 3tc9_A Hypothetical hydrolase; 94.6 0.85 2.9E-05 48.9 17.0 131 431-596 159-300 (430)
287 1k3i_A Galactose oxidase precu 94.6 0.9 3.1E-05 51.2 18.0 124 385-533 190-322 (656)
288 4a0p_A LRP6, LRP-6, low-densit 94.5 8 0.00027 43.6 26.1 190 363-614 19-214 (628)
289 4a0p_A LRP6, LRP-6, low-densit 94.3 8.8 0.0003 43.3 26.4 147 425-605 96-245 (628)
290 3sre_A PON1, serum paraoxonase 93.9 5.7 0.00019 41.7 21.2 182 428-622 80-282 (355)
291 3tc9_A Hypothetical hydrolase; 93.7 8.5 0.00029 41.0 27.0 152 342-530 139-297 (430)
292 3s94_A LRP-6, low-density lipo 93.5 7.7 0.00026 43.6 22.8 147 425-604 100-250 (619)
293 2p9w_A MAL S 1 allergenic prot 93.4 2.8 9.6E-05 43.8 17.5 153 425-598 29-216 (334)
294 3qqz_A Putative uncharacterize 92.5 9.4 0.00032 38.1 26.3 191 378-623 24-240 (255)
295 2ism_A Putative oxidoreductase 92.3 12 0.00039 38.7 24.0 65 559-624 260-332 (352)
296 1n7d_A LDL receptor, low-densi 92.1 0.37 1.3E-05 55.3 9.5 112 458-597 454-571 (699)
297 3pbp_A Nucleoporin NUP82; beta 92.0 2.4 8.3E-05 45.9 15.1 151 358-528 41-206 (452)
298 4hw6_A Hypothetical protein, I 92.0 4.7 0.00016 43.2 17.6 132 431-596 162-303 (433)
299 3das_A Putative oxidoreductase 92.0 7.7 0.00026 40.6 18.7 120 378-526 29-162 (347)
300 1cru_A Protein (soluble quinop 92.0 13 0.00046 39.9 21.3 70 456-525 76-165 (454)
301 3a9g_A Putative uncharacterize 91.9 5.1 0.00017 41.6 17.2 69 456-524 72-155 (354)
302 3s94_A LRP-6, low-density lipo 91.6 17 0.00058 40.8 22.4 179 358-597 18-202 (619)
303 2ism_A Putative oxidoreductase 89.1 4.3 0.00015 42.0 13.7 69 456-524 74-155 (352)
304 2g8s_A Glucose/sorbosone dehyd 87.3 13 0.00045 38.3 16.0 67 456-524 65-150 (353)
305 2p9w_A MAL S 1 allergenic prot 86.7 29 0.00099 36.1 17.9 155 352-528 29-209 (334)
306 1tl2_A L10, protein (tachylect 85.9 5.1 0.00018 39.7 11.0 119 457-596 41-162 (236)
307 3a9g_A Putative uncharacterize 85.4 36 0.0012 35.0 18.9 62 456-521 28-94 (354)
308 3kya_A Putative phosphatase; s 83.1 58 0.002 35.6 26.8 143 342-486 141-340 (496)
309 3kya_A Putative phosphatase; s 82.6 41 0.0014 36.8 17.7 148 431-595 162-339 (496)
310 1tl2_A L10, protein (tachylect 82.5 19 0.00066 35.6 13.4 66 459-528 90-157 (236)
311 4gq2_M Nucleoporin NUP120; bet 80.4 16 0.00055 43.3 14.4 37 458-494 237-273 (950)
312 3pbp_A Nucleoporin NUP82; beta 78.0 63 0.0022 34.9 16.7 100 431-534 41-158 (452)
313 3amr_A 3-phytase; beta-propell 77.5 73 0.0025 33.3 20.4 161 424-614 43-235 (355)
314 2g8s_A Glucose/sorbosone dehyd 77.4 67 0.0023 32.8 17.3 63 456-520 17-86 (353)
315 1cru_A Protein (soluble quinop 76.6 40 0.0014 36.2 15.1 71 451-521 21-98 (454)
316 3das_A Putative oxidoreductase 69.2 1.1E+02 0.0038 31.7 20.2 70 451-520 26-100 (347)
317 2be1_A Serine/threonine-protei 68.4 36 0.0012 35.4 11.8 115 350-495 12-138 (339)
318 4gq2_M Nucleoporin NUP120; bet 68.3 14 0.00047 43.8 9.6 37 569-605 237-274 (950)
319 4fhn_B Nucleoporin NUP120; pro 64.6 13 0.00046 44.8 8.7 37 569-605 239-276 (1139)
320 2wg3_C Hedgehog-interacting pr 62.0 74 0.0025 34.3 13.2 70 456-525 68-160 (463)
321 2wg3_C Hedgehog-interacting pr 61.5 1.1E+02 0.0037 33.0 14.4 64 456-520 13-89 (463)
322 3ott_A Two-component system se 57.0 2.4E+02 0.0084 31.5 20.3 111 413-526 374-495 (758)
323 3sbq_A Nitrous-oxide reductase 56.7 29 0.001 38.9 8.7 30 459-488 380-409 (638)
324 3f7f_A Nucleoporin NUP120; nuc 51.1 19 0.00066 41.3 6.4 36 569-605 223-258 (729)
325 1xi4_A Clathrin heavy chain; a 48.1 5.1E+02 0.017 32.5 19.4 157 431-611 125-304 (1630)
326 3s25_A Hypothetical 7-bladed b 47.3 2.3E+02 0.0079 28.3 13.4 76 429-523 127-203 (302)
327 4fhn_B Nucleoporin NUP120; pro 42.4 14 0.00048 44.6 3.7 37 458-494 239-275 (1139)
328 3f7f_A Nucleoporin NUP120; nuc 41.1 29 0.00098 39.9 5.8 37 457-495 222-258 (729)
329 2be1_A Serine/threonine-protei 39.4 36 0.0012 35.4 5.8 28 578-605 111-138 (339)
330 2xzh_A Clathrin heavy chain 1; 36.1 4E+02 0.014 27.9 28.1 161 431-614 126-308 (365)
331 2xn4_A Kelch-like protein 2; s 35.0 3.1E+02 0.011 26.3 16.0 53 432-489 125-184 (302)
332 3ott_A Two-component system se 29.1 6.3E+02 0.021 28.0 27.5 183 413-624 104-297 (758)
333 4asc_A Kelch repeat and BTB do 28.1 4.2E+02 0.014 25.6 12.4 184 410-625 35-251 (315)
334 1ex2_A Protein MAF; structural 26.8 22 0.00075 34.0 1.5 18 77-94 8-25 (189)
335 2xzh_A Clathrin heavy chain 1; 26.5 5.7E+02 0.02 26.7 26.8 156 259-487 70-236 (365)
336 3q6k_A 43.2 kDa salivary prote 25.3 6E+02 0.02 26.5 21.3 209 291-521 96-341 (381)
337 3ii7_A Kelch-like protein 7; p 24.2 4.7E+02 0.016 24.9 13.6 163 407-602 42-230 (306)
338 3sre_A PON1, serum paraoxonase 23.9 6E+02 0.021 26.0 17.9 37 451-487 44-92 (355)
339 2p5x_A ASMTL, N-acetylserotoni 23.2 30 0.001 34.0 1.8 18 77-94 9-26 (230)
340 1bpo_A Protein (clathrin); cla 21.9 7.9E+02 0.027 26.7 32.3 173 431-623 125-318 (494)
No 1
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=8.5e-38 Score=353.23 Aligned_cols=340 Identities=16% Similarity=0.148 Sum_probs=265.5
Q ss_pred eeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEEEEee------------ecCCCc-----------eeE
Q 006825 261 MSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNE------------IQEDGT-----------WKK 317 (630)
Q Consensus 261 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~~v~e------------~~~dg~-----------~~~ 317 (630)
+++||||+|| +++..++.++||++..++..+... +..||. ...
T Consensus 65 ~~~spdg~~l--------------asg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~ 130 (611)
T 1nr0_A 65 AKTSPSGYYC--------------ASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGH 130 (611)
T ss_dssp EEECTTSSEE--------------EEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEE
T ss_pred EEECCCCcEE--------------EEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeE
Confidence 7999999999 777788899999997654322111 111221 112
Q ss_pred EEEcCCCceEeeecceeeecCccceeEEEeec----ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCC
Q 006825 318 VKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGH 393 (630)
Q Consensus 318 l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~ 393 (630)
++.-.+|+.+ .++.||...|.+++|+| .|++|+.|++++ +||..+++++.++. +|...|.+|+|+|+|+
T Consensus 131 v~~wd~~~~~-----~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~-lwd~~~~~~~~~l~-~H~~~V~~v~fspdg~ 203 (611)
T 1nr0_A 131 VFLFDTGTSN-----GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVA-IFEGPPFKFKSTFG-EHTKFVHSVRYNPDGS 203 (611)
T ss_dssp EEETTTCCBC-----BCCCCCSSCEEEEEECSSSSCEEEEEETTSCEE-EEETTTBEEEEEEC-CCSSCEEEEEECTTSS
T ss_pred EEEeeCCCCc-----ceecCCCCCceEEEECCCCCeEEEEEeCCCeEE-EEECCCCeEeeeec-cccCceEEEEECCCCC
Confidence 3333355554 67899999999999998 499999999999 99999999999998 9999999999999999
Q ss_pred eEEeecCCC-----C--Ccc----c-c------CCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccce-------
Q 006825 394 KERRSSDER-----D--TSS----E-K------GGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTAL------- 446 (630)
Q Consensus 394 ~lasgS~D~-----d--t~s----~-~------gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~------- 446 (630)
+|++++.|+ + ++. + . +|...|.+++|++++ +++++.|++|++||+.+++....
T Consensus 204 ~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~ 283 (611)
T 1nr0_A 204 LFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI 283 (611)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSG
T ss_pred EEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCc
Confidence 999999987 1 111 2 2 799999999999988 99999999999999986543211
Q ss_pred -------------------------------eeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeee
Q 006825 447 -------------------------------YKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELL 495 (630)
Q Consensus 447 -------------------------------~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~ 495 (630)
.+.+.+.+|...|++++|+|||++|+|++.|++|++||+.++.....+
T Consensus 284 ~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~- 362 (611)
T 1nr0_A 284 EDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVF- 362 (611)
T ss_dssp GGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECS-
T ss_pred cceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeec-
Confidence 123567899999999999999999999999999999999988776553
Q ss_pred cccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccccccc--------------------------------------
Q 006825 496 EKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSIN-------------------------------------- 537 (630)
Q Consensus 496 ~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~-------------------------------------- 537 (630)
..+|...|.+++|++++ .+++++.|+++++|+......
T Consensus 363 ---~~~h~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~ 438 (611)
T 1nr0_A 363 ---PDVHATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYS 438 (611)
T ss_dssp ---SCSCSSCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEE
T ss_pred ---ccCCcceEEEEEECCCC-cEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEe
Confidence 26788889999999776 566778888888887543110
Q ss_pred --------------ccccccCcccc-------ccEEEeCCCCc---eEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEE
Q 006825 538 --------------RKSLSLDHMVV-------PETVFALSDKP---ICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRL 592 (630)
Q Consensus 538 --------------~~s~s~d~~i~-------~~~Vwdlsgk~---l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrI 592 (630)
...+++++... .-++|++.+.. +.+ .+|...|++|+|+|+ ++|++++.|++|++
T Consensus 439 ~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~ 517 (611)
T 1nr0_A 439 HGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIP 517 (611)
T ss_dssp TTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred CCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEE
Confidence 01122222211 11788884432 233 689999999999999 99999999999999
Q ss_pred EeCCC-CcEEEE--Ee-cCCceEEEE-cCCCcEEEEecce
Q 006825 593 WHLSS-KTCLKI--FS-HSDYDISLV-DRLMLRFAYGAFL 627 (630)
Q Consensus 593 WDl~t-g~~l~t--~~-H~~~V~sVa-s~~~~~lAsgs~~ 627 (630)
|++.+ ++++.+ +. |...|++|+ +|++..|++++.+
T Consensus 518 w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D 557 (611)
T 1nr0_A 518 YSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLD 557 (611)
T ss_dssp EEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECC
Confidence 99988 666654 44 999999999 9999999998765
No 2
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2e-37 Score=318.78 Aligned_cols=265 Identities=13% Similarity=0.072 Sum_probs=235.5
Q ss_pred ecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC----
Q 006825 330 EEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER---- 402 (630)
Q Consensus 330 eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~---- 402 (630)
+...+|.||+..|.+|+|+| .|++|+.|++++ +||+.++..+..+. +|...|++++|+|+|+++++++.|+
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~-lWd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~s~d~~i~v 81 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVE-LWNYETQVEVRSIQ-VTETPVRAGKFIARKNWIIVGSDDFRIRV 81 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEE-EEETTTTEEEEEEE-CCSSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEE-EEECCCCceeEEee-ccCCcEEEEEEeCCCCEEEEECCCCEEEE
Confidence 34478899999999999999 799999999999 99999999999998 9999999999999999999999997
Q ss_pred ---CCc----cccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc-CCCEEE
Q 006825 403 ---DTS----SEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLA 472 (630)
Q Consensus 403 ---dt~----s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp-DG~~LA 472 (630)
.+. .+.+|...|.++++++++ +++|+.|++|++||+..+. .+.+.+.+|...|.+++|+| ++.+|+
T Consensus 82 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~----~~~~~~~~h~~~v~~v~~~p~~~~~l~ 157 (304)
T 2ynn_A 82 FNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW----ALEQTFEGHEHFVMCVAFNPKDPSTFA 157 (304)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT----EEEEEECCCCSCEEEEEECTTCTTEEE
T ss_pred EECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc----chhhhhcccCCcEEEEEECCCCCCEEE
Confidence 222 278899999999999987 8999999999999987552 24577899999999999999 789999
Q ss_pred EEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECC--CCCEEEEeeCCCeeeeecccccccccccccCcccccc
Q 006825 473 SAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSP--EPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPE 550 (630)
Q Consensus 473 SgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSp--dg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~ 550 (630)
+|+.|++|+|||+.++.....+ ..+|...+..+.|+| ++.++++++.|++|
T Consensus 158 sgs~D~~v~iwd~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i----------------------- 210 (304)
T 2ynn_A 158 SGCLDRTVKVWSLGQSTPNFTL----TTGQERGVNYVDYYPLPDKPYMITASDDLTI----------------------- 210 (304)
T ss_dssp EEETTSEEEEEETTCSSCSEEE----ECCCTTCEEEEEECCSTTCCEEEEEETTSEE-----------------------
T ss_pred EEeCCCeEEEEECCCCCcccee----ccCCcCcEEEEEEEEcCCCCEEEEEcCCCeE-----------------------
Confidence 9999999999999887766554 356778889999986 68899999999999
Q ss_pred EEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCc--EEEEe
Q 006825 551 TVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLML--RFAYG 624 (630)
Q Consensus 551 ~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~--~lAsg 624 (630)
++|++ +++++.++.+|...|.+++|+|+ .+|+||+.|++|+|||+.++++++++. |...|++++ .|.+. +++++
T Consensus 211 ~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg 290 (304)
T 2ynn_A 211 KIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG 290 (304)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEE
T ss_pred EEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEe
Confidence 88888 77899999999999999999999 999999999999999999999999998 999999999 66653 57776
Q ss_pred cce
Q 006825 625 AFL 627 (630)
Q Consensus 625 s~~ 627 (630)
...
T Consensus 291 ~~~ 293 (304)
T 2ynn_A 291 FDN 293 (304)
T ss_dssp ETT
T ss_pred cCC
Confidence 543
No 3
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=4e-37 Score=330.82 Aligned_cols=261 Identities=18% Similarity=0.248 Sum_probs=240.9
Q ss_pred ceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-----C
Q 006825 332 FEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-----D 403 (630)
Q Consensus 332 f~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-----d 403 (630)
...+.||...|++++|+| .|++|+.|++|+ +||+.+|+.+.+++ +|...|.+|+|+|+|+++++|+.|+ +
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~-vwd~~~~~~~~~l~-~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd 178 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIK-VWDYETGDFERTLK-GHTDSVQDISFDHSGKLLASCSADMTIKLWD 178 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEE-EEETTTCCCCEEEC-CCSSCEEEEEECTTSSEEEEEETTSCCCEEE
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEE-EEECCCCcEEEEEe-ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEe
Confidence 356889999999999998 799999999999 99999999999999 9999999999999999999999997 1
Q ss_pred --C----ccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEe
Q 006825 404 --T----SSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG 475 (630)
Q Consensus 404 --t----~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS 475 (630)
+ ..+.+|...|.++.+.+++ +++|+.|++|++||+.++. ++.++.+|...|.+++|+|+|++|++|+
T Consensus 179 ~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~-----~~~~~~~h~~~v~~~~~~~~g~~l~s~s 253 (410)
T 1vyh_C 179 FQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY-----CVKTFTGHREWVRMVRPNQDGTLIASCS 253 (410)
T ss_dssp TTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC-----EEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred CCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-----EEEEEeCCCccEEEEEECCCCCEEEEEc
Confidence 1 2267899999999999887 9999999999999998764 5788999999999999999999999999
Q ss_pred CCCcEEEEECcCCceeeeeecccccCcccceEEEEECCC--------------------CCEEEEeeCCCeeeeeccccc
Q 006825 476 EDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE--------------------PTSLSPKHLDNHLEKKRRGRS 535 (630)
Q Consensus 476 ~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpd--------------------g~~lasgs~Dg~I~i~~~~~~ 535 (630)
.|++|+|||+.++++...+ .+|...|.+++|+|+ +.++++++.|+.|
T Consensus 254 ~D~~v~vwd~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i-------- 320 (410)
T 1vyh_C 254 NDQTVRVWVVATKECKAEL-----REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTI-------- 320 (410)
T ss_dssp TTSCEEEEETTTCCEEEEE-----CCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEE--------
T ss_pred CCCeEEEEECCCCceeeEe-----cCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeE--------
Confidence 9999999999998887774 789999999999996 6789999999999
Q ss_pred ccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEE
Q 006825 536 INRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDIS 612 (630)
Q Consensus 536 ~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~s 612 (630)
++|++ +++++.++.+|...|++++|+|+ .+|++|+.|++|+|||+.+++++.++. |...|++
T Consensus 321 ---------------~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~ 385 (410)
T 1vyh_C 321 ---------------KMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTS 385 (410)
T ss_dssp ---------------EEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEE
T ss_pred ---------------EEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEE
Confidence 88888 78899999999999999999999 999999999999999999999999998 9999999
Q ss_pred EE-cCCCcEEEEecce
Q 006825 613 LV-DRLMLRFAYGAFL 627 (630)
Q Consensus 613 Va-s~~~~~lAsgs~~ 627 (630)
++ ++.+..+++++.+
T Consensus 386 l~~~~~~~~l~sgs~D 401 (410)
T 1vyh_C 386 LDFHKTAPYVVTGSVD 401 (410)
T ss_dssp EEECSSSSCEEEEETT
T ss_pred EEEcCCCCEEEEEeCC
Confidence 99 8888888888755
No 4
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.4e-36 Score=343.25 Aligned_cols=293 Identities=15% Similarity=0.166 Sum_probs=243.2
Q ss_pred EEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCc--eeEEecCCccCCEEEEEEcCC
Q 006825 317 KVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGG--MKSKKKGSWFKSIRTVASSVT 391 (630)
Q Consensus 317 ~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~--~~~~lk~gH~~~V~sVAfSpd 391 (630)
++|++.+++.+ .++.||...|++++|+| +||+|+.|++|+ |||+.+++ .+.++. +|.+.|++|+|+|+
T Consensus 42 ~l~~~~~~~~~-----~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~-lWd~~~~~~~~~~~~~-~~~~~v~~v~fs~d 114 (611)
T 1nr0_A 42 YTVPVGSLTDT-----EIYTEHSHQTTVAKTSPSGYYCASGDVHGNVR-IWDTTQTTHILKTTIP-VFSGPVKDISWDSE 114 (611)
T ss_dssp EEEETTCSSCC-----EEECCCSSCEEEEEECTTSSEEEEEETTSEEE-EEESSSTTCCEEEEEE-CSSSCEEEEEECTT
T ss_pred EEecCCCcccC-----eEecCCCCceEEEEECCCCcEEEEEeCCCCEE-EeECCCCcceeeEeec-ccCCceEEEEECCC
Confidence 45555555555 67889999999999999 899999999999 99997654 455677 89999999999999
Q ss_pred CCeEEeecCCC---------C----CccccCCcceEEEeecCCCe---EEEecCCcEEEEEeCCCCcccceeeeeEeccc
Q 006825 392 GHKERRSSDER---------D----TSSEKGGRRSSSATDDSQDV---SFHGQERVRVRQYGKSCKDLTALYKCQEIQAH 455 (630)
Q Consensus 392 G~~lasgS~D~---------d----t~s~~gh~~~Vsa~~~s~d~---l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gH 455 (630)
|++|++++.++ + ...+.+|...|.+++|++++ +++++.|++|++|+....+ ++++|.+|
T Consensus 115 g~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~-----~~~~l~~H 189 (611)
T 1nr0_A 115 SKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK-----FKSTFGEH 189 (611)
T ss_dssp SCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE-----EEEEECCC
T ss_pred CCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCe-----Eeeeeccc
Confidence 99999887653 1 23378999999999999975 8999999999999976543 56789999
Q ss_pred CcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeec--ccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccc
Q 006825 456 NGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLE--KQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRG 533 (630)
Q Consensus 456 t~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~--~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~ 533 (630)
...|++++|+|||++||||+.|++|+|||+.+++.+..+.. ....+|...|.+++|+|++++|++++.|++|++|+..
T Consensus 190 ~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~ 269 (611)
T 1nr0_A 190 TKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVA 269 (611)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred cCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 99999999999999999999999999999999988776421 0112899999999999999999999999999999976
Q ss_pred ccccccc-----------------------cccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCC
Q 006825 534 RSINRKS-----------------------LSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDK 588 (630)
Q Consensus 534 ~~~~~~s-----------------------~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~Dg 588 (630)
....... .+.++.+ ++|+. .++++..+.||...|++++|+|+ ++|++++.|+
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i---~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~ 346 (611)
T 1nr0_A 270 TLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFI---NFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEG 346 (611)
T ss_dssp TTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCE---EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcE---EEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCC
Confidence 5322211 2223333 78888 56778889999999999999999 9999999999
Q ss_pred cEEEEeCCCCcEEEEEe--cCCceEEEE-cCCCcEEEEec
Q 006825 589 TVRLWHLSSKTCLKIFS--HSDYDISLV-DRLMLRFAYGA 625 (630)
Q Consensus 589 tVrIWDl~tg~~l~t~~--H~~~V~sVa-s~~~~~lAsgs 625 (630)
+|++||+.++++...+. |...|.+++ .+.+. +++++
T Consensus 347 ~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~-l~s~s 385 (611)
T 1nr0_A 347 HINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVS 385 (611)
T ss_dssp CEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEE
T ss_pred cEEEEECCCCceeeecccCCcceEEEEEECCCCc-EEEEE
Confidence 99999999999988874 999999999 55544 44443
No 5
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3.6e-36 Score=332.05 Aligned_cols=306 Identities=20% Similarity=0.277 Sum_probs=259.7
Q ss_pred ceeecCCCCcccCCCccccccCCCCCcccccccEEEEEC---------------------CCCcEEEEeeecCCCceeEE
Q 006825 260 SMSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNL---------------------DNGKEFVVNEIQEDGTWKKV 318 (630)
Q Consensus 260 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~L---------------------ddG~~~~v~e~~~dg~~~~l 318 (630)
++.++|||++|+ ++..++.++||++ .+|+.+++.. .|+. .++
T Consensus 226 ~~~~s~dg~~l~--------------~~~~d~~i~~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~--~d~~-i~~ 288 (577)
T 2ymu_A 226 GVAFSPDGQTIA--------------SASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASAS--DDKT-VKL 288 (577)
T ss_dssp EEEECTTSSCEE--------------EEETTSCEEEECTTSCEEEEECCCSSCEEEEEECTTSSEEEEEE--TTSC-EEE
T ss_pred EEEECCCCCEEE--------------EEeCCCEEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEe--CCCE-EEE
Confidence 478999999993 3344555666654 2344443322 2333 567
Q ss_pred EEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeE
Q 006825 319 KEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKE 395 (630)
Q Consensus 319 ~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~l 395 (630)
|+. +++.+ ..+.||...|.+++|+| .+++++.|++++ +||.. +..+.++. +|...|.+++|+|+|+++
T Consensus 289 w~~-~~~~~-----~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~-~w~~~-~~~~~~~~-~~~~~v~~~~~s~~g~~l 359 (577)
T 2ymu_A 289 WNR-NGQLL-----QTLTGHSSSVWGVAFSPDGQTIASASDDKTVK-LWNRN-GQHLQTLT-GHSSSVWGVAFSPDGQTI 359 (577)
T ss_dssp EET-TSCEE-----EEECCCSSCEEEEEECTTSSEEEEEETTSCEE-EEETT-SCEEEEEC-CCSSCEEEEEECTTSSEE
T ss_pred EeC-CCcEE-----EEEecCCCCeEEEEECCCCCEEEEEeCCCeEE-EEeCC-CCeeEEEe-CCCCCEEEEEECCCCCEE
Confidence 874 45555 77899999999999998 799999999999 99975 55667777 999999999999999999
Q ss_pred EeecCCC-----C-----CccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEE
Q 006825 396 RRSSDER-----D-----TSSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIK 463 (630)
Q Consensus 396 asgS~D~-----d-----t~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVa 463 (630)
++++.|+ + ...+.+|...|.+++|++++ +++++.|+.|++|+.... .++++.+|...|++++
T Consensus 360 ~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~------~~~~~~~~~~~v~~~~ 433 (577)
T 2ymu_A 360 ASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ------LLQTLTGHSSSVWGVA 433 (577)
T ss_dssp EEEETTSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTCC------EEEEEECCSSCEEEEE
T ss_pred EEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCC------EEEEecCCCCCeEEEE
Confidence 9999887 1 12367899999999999998 899999999999996433 4678999999999999
Q ss_pred EccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccccccccccccc
Q 006825 464 FSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSL 543 (630)
Q Consensus 464 FSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~ 543 (630)
|+||+++|++++.|++|++||+ +++.+..+ .+|...|.+++|+|++++|++++.|+.|
T Consensus 434 ~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~-----~~~~~~v~~~~~spd~~~las~~~d~~i---------------- 491 (577)
T 2ymu_A 434 FSPDDQTIASASDDKTVKLWNR-NGQLLQTL-----TGHSSSVRGVAFSPDGQTIASASDDKTV---------------- 491 (577)
T ss_dssp ECTTSSEEEEEETTSEEEEEET-TSCEEEEE-----ECCSSCEEEEEECTTSCEEEEEETTSEE----------------
T ss_pred ECCCCCEEEEEcCCCEEEEEEC-CCCEEEEE-----cCCCCCEEEEEEcCCCCEEEEEeCCCEE----------------
Confidence 9999999999999999999997 45555553 7899999999999999999999999999
Q ss_pred CccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcE
Q 006825 544 DHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLR 620 (630)
Q Consensus 544 d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~ 620 (630)
++|+.++++++++.+|...|++|+|+|+ ++|++++.|++|+|||. +++++.++. |.+.|++|+ .|++.+
T Consensus 492 -------~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~ 563 (577)
T 2ymu_A 492 -------KLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQT 563 (577)
T ss_dssp -------EEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSC
T ss_pred -------EEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCE
Confidence 8899999999999999999999999999 99999999999999996 689999998 999999999 899999
Q ss_pred EEEecce
Q 006825 621 FAYGAFL 627 (630)
Q Consensus 621 lAsgs~~ 627 (630)
|++++.+
T Consensus 564 l~s~~~D 570 (577)
T 2ymu_A 564 IASASSD 570 (577)
T ss_dssp EEEEETT
T ss_pred EEEEeCC
Confidence 9888764
No 6
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3.5e-36 Score=314.32 Aligned_cols=264 Identities=15% Similarity=0.151 Sum_probs=236.6
Q ss_pred eecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC---
Q 006825 329 IEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER--- 402 (630)
Q Consensus 329 ~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~--- 402 (630)
+.+..++.||...|.+++|+| .|++|+.|++++ +||+.+++.+..+. .|...|.+++|+|+|+++++++.|+
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~-iWd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~d~~v~ 122 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLI-IWDSYTTNKVHAIP-LRSSWVMTCAYAPSGNYVACGGLDNICS 122 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEE-EEETTTCCEEEEEE-CSSSCEEEEEECTTSSEEEEEETTCEEE
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEE-EEECCCCCcceEee-cCCccEEEEEECCCCCEEEEEeCCCeEE
Confidence 334478999999999999998 799999999999 99999999999998 8999999999999999999999887
Q ss_pred --C--C--------ccccCCcceEEEeecCCCe-EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCC
Q 006825 403 --D--T--------SSEKGGRRSSSATDDSQDV-SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGR 469 (630)
Q Consensus 403 --d--t--------~s~~gh~~~Vsa~~~s~d~-l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~ 469 (630)
+ + ..+.+|...|.++.|.++. +++++.|++|++||+.+++ ++.++.+|.+.|++++|+|+++
T Consensus 123 iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~-----~~~~~~~h~~~v~~~~~~~~~~ 197 (340)
T 1got_B 123 IYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQ-----QTTTFTGHTGDVMSLSLAPDTR 197 (340)
T ss_dssp EEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTE-----EEEEECCCSSCEEEEEECTTSS
T ss_pred EEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCc-----EEEEEcCCCCceEEEEECCCCC
Confidence 1 1 1257899999999988777 8999999999999998764 4678999999999999999999
Q ss_pred EEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccc
Q 006825 470 YLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVP 549 (630)
Q Consensus 470 ~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~ 549 (630)
+|++|+.|++|+|||+.++.....+ .+|...|.+++|+|++.+|++++.|++|
T Consensus 198 ~l~sg~~d~~v~~wd~~~~~~~~~~-----~~h~~~v~~v~~~p~~~~l~s~s~d~~v---------------------- 250 (340)
T 1got_B 198 LFVSGACDASAKLWDVREGMCRQTF-----TGHESDINAICFFPNGNAFATGSDDATC---------------------- 250 (340)
T ss_dssp EEEEEETTSCEEEEETTTCSEEEEE-----CCCSSCEEEEEECTTSSEEEEEETTSCE----------------------
T ss_pred EEEEEeCCCcEEEEECCCCeeEEEE-----cCCcCCEEEEEEcCCCCEEEEEcCCCcE----------------------
Confidence 9999999999999999999887774 7899999999999999999999999999
Q ss_pred cEEEeC-CCCceEEec--cCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcEEEE
Q 006825 550 ETVFAL-SDKPICSFQ--GHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLRFAY 623 (630)
Q Consensus 550 ~~Vwdl-sgk~l~tL~--GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~lAs 623 (630)
++|++ .++.+..+. .+...|++++|+|+ .+|++|+.|++|+|||+.+++++.++. |...|++|+ ++++..+++
T Consensus 251 -~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s 329 (340)
T 1got_B 251 -RLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVAT 329 (340)
T ss_dssp -EEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEE
T ss_pred -EEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEE
Confidence 77777 455666654 33457999999999 999999999999999999999999998 999999999 899999999
Q ss_pred ecce
Q 006825 624 GAFL 627 (630)
Q Consensus 624 gs~~ 627 (630)
++.+
T Consensus 330 ~s~D 333 (340)
T 1got_B 330 GSWD 333 (340)
T ss_dssp EETT
T ss_pred EcCC
Confidence 8765
No 7
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=6.5e-36 Score=311.38 Aligned_cols=260 Identities=21% Similarity=0.242 Sum_probs=233.5
Q ss_pred eeeecCccceeEEEeec-------ceEeecCCCccEecccCCCCce--eEEecCCccCCEEEEEEcCCCCeEEeecCCC-
Q 006825 333 EMCVGHSPIVQELMRRQ-------NVEEGNKDSFDLNNNGSSGGGM--KSKKKGSWFKSIRTVASSVTGHKERRSSDER- 402 (630)
Q Consensus 333 ~~l~GHs~~V~~Lafs~-------~laSgS~D~tvr~vWD~~tG~~--~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~- 402 (630)
..+.+|...|++|+|+| .|+|||.|++++ +|++.+++. ...+. ||...|.+++|++++.++++++.|+
T Consensus 26 ~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~-vW~~~~~~~~~~~~l~-gh~~~v~~~~~~~~~~~l~s~s~D~~ 103 (321)
T 3ow8_A 26 KQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVK-VWKWRDERLDLQWSLE-GHQLGVVSVDISHTLPIAASSSLDAH 103 (321)
T ss_dssp EETTSSSSCEEEEEEC-------CEEEEEETTSCEE-EEEEETTEEEEEEEEC-CCSSCEEEEEECSSSSEEEEEETTSE
T ss_pred eecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEE-EEECCCCCeeeeeeec-cCCCCEEEEEECCCCCEEEEEeCCCc
Confidence 66789999999999976 599999999999 999987764 44677 9999999999999999999999987
Q ss_pred ----C--C----ccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCE
Q 006825 403 ----D--T----SSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRY 470 (630)
Q Consensus 403 ----d--t----~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~ 470 (630)
+ + .....|...+.+++|++++ +++++.+++|++|++..++ ....+..|...|.+++|+|+|++
T Consensus 104 i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~-----~~~~~~~~~~~v~~~~~spdg~~ 178 (321)
T 3ow8_A 104 IRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK-----KEYSLDTRGKFILSIAYSPDGKY 178 (321)
T ss_dssp EEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCS-----EEEEEECSSSCEEEEEECTTSSE
T ss_pred EEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCc-----eeEEecCCCceEEEEEECCCCCE
Confidence 2 1 1255677778888999887 8999999999999998764 35678899999999999999999
Q ss_pred EEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCcccccc
Q 006825 471 LASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPE 550 (630)
Q Consensus 471 LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~ 550 (630)
||+|+.|++|+|||+.+++.+..+ .+|...|.+++|+|++.+|++++.|+.|
T Consensus 179 lasg~~dg~i~iwd~~~~~~~~~~-----~~h~~~v~~l~~spd~~~l~s~s~dg~i----------------------- 230 (321)
T 3ow8_A 179 LASGAIDGIINIFDIATGKLLHTL-----EGHAMPIRSLTFSPDSQLLVTASDDGYI----------------------- 230 (321)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEE-----CCCSSCCCEEEECTTSCEEEEECTTSCE-----------------------
T ss_pred EEEEcCCCeEEEEECCCCcEEEEE-----cccCCceeEEEEcCCCCEEEEEcCCCeE-----------------------
Confidence 999999999999999999887774 7899999999999999999999999999
Q ss_pred EEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcEEEEecc
Q 006825 551 TVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLRFAYGAF 626 (630)
Q Consensus 551 ~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~lAsgs~ 626 (630)
++|++ .++++.++.+|...|.+++|+|+ .+|++++.|++|+|||+.+++++.++. |...|++|+ ++++..+++++.
T Consensus 231 ~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~ 310 (321)
T 3ow8_A 231 KIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGD 310 (321)
T ss_dssp EEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeC
Confidence 88888 67888999999999999999999 999999999999999999999999998 999999999 888888888875
Q ss_pred e
Q 006825 627 L 627 (630)
Q Consensus 627 ~ 627 (630)
+
T Consensus 311 d 311 (321)
T 3ow8_A 311 D 311 (321)
T ss_dssp T
T ss_pred C
Confidence 4
No 8
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=5.1e-36 Score=322.18 Aligned_cols=239 Identities=19% Similarity=0.193 Sum_probs=214.4
Q ss_pred EEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCe
Q 006825 318 VKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHK 394 (630)
Q Consensus 318 l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~ 394 (630)
+|+..+|+.+ .++.||...|.+|+|+| .|++|+.|++|+ +||+.+++++.++. +|...|.+++|+|+|.+
T Consensus 134 vwd~~~~~~~-----~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~-iwd~~~~~~~~~~~-~h~~~V~~v~~~p~~~~ 206 (410)
T 1vyh_C 134 VWDYETGDFE-----RTLKGHTDSVQDISFDHSGKLLASCSADMTIK-LWDFQGFECIRTMH-GHDHNVSSVSIMPNGDH 206 (410)
T ss_dssp EEETTTCCCC-----EEECCCSSCEEEEEECTTSSEEEEEETTSCCC-EEETTSSCEEECCC-CCSSCEEEEEECSSSSE
T ss_pred EEECCCCcEE-----EEEeccCCcEEEEEEcCCCCEEEEEeCCCeEE-EEeCCCCceeEEEc-CCCCCEEEEEEeCCCCE
Confidence 3444444444 67789999999999998 799999999999 99999999999998 99999999999999999
Q ss_pred EEeecCCC-----C--C----ccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEE
Q 006825 395 ERRSSDER-----D--T----SSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWS 461 (630)
Q Consensus 395 lasgS~D~-----d--t----~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~s 461 (630)
+++++.|+ + + ..+.+|...|.++.+++++ +++++.|++|++||..+++ +..++.+|...|.+
T Consensus 207 l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~-----~~~~~~~h~~~v~~ 281 (410)
T 1vyh_C 207 IVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE-----CKAELREHRHVVEC 281 (410)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-----EEEEECCCSSCEEE
T ss_pred EEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCc-----eeeEecCCCceEEE
Confidence 99999988 2 2 2367899999999999987 8999999999999997764 46789999999999
Q ss_pred EEEccC--------------------CCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEe
Q 006825 462 IKFSLD--------------------GRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPK 521 (630)
Q Consensus 462 VaFSpD--------------------G~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasg 521 (630)
++|+|+ |.+|++|+.|++|+|||+.++.++..+ .+|...|.+++|+|++.+|+++
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~-----~~h~~~v~~v~~~~~g~~l~s~ 356 (410)
T 1vyh_C 282 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL-----VGHDNWVRGVLFHSGGKFILSC 356 (410)
T ss_dssp EEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEE-----ECCSSCEEEEEECSSSSCEEEE
T ss_pred EEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEE-----ECCCCcEEEEEEcCCCCEEEEE
Confidence 999996 779999999999999999999888774 7899999999999999999999
Q ss_pred eCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCC
Q 006825 522 HLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLS 596 (630)
Q Consensus 522 s~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~ 596 (630)
+.|+.| ++|++ +++++.++.+|...|++++|+|+ .+|+||+.|++|+||+++
T Consensus 357 s~D~~i-----------------------~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 357 ADDKTL-----------------------RVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp ETTTEE-----------------------EEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred eCCCeE-----------------------EEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 999999 88888 67889999999999999999999 899999999999999864
No 9
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=9.3e-36 Score=314.74 Aligned_cols=232 Identities=13% Similarity=0.052 Sum_probs=196.1
Q ss_pred eecCccceeEEEeec--ceEeecCCCccEecccCCCCceeEEec---CCccCCEEEEEEcCCCCeEEeecCCCCCccccC
Q 006825 335 CVGHSPIVQELMRRQ--NVEEGNKDSFDLNNNGSSGGGMKSKKK---GSWFKSIRTVASSVTGHKERRSSDERDTSSEKG 409 (630)
Q Consensus 335 l~GHs~~V~~Lafs~--~laSgS~D~tvr~vWD~~tG~~~~~lk---~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~g 409 (630)
...|...|.+|+|+| .|++|+.|++|+ +||+.+++.+..++ .+|...|++|+|+|+|++|+
T Consensus 78 ~~~~~~~v~~~~~s~d~~l~~~s~dg~v~-lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~------------- 143 (344)
T 4gqb_B 78 GVQTEAGVADLTWVGERGILVASDSGAVE-LWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAV------------- 143 (344)
T ss_dssp EEEESSCEEEEEEETTTEEEEEETTSEEE-EEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEE-------------
T ss_pred eeccCCCEEEEEEeCCCeEEEEECCCEEE-EEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEE-------------
Confidence 345677899999999 799999999999 99999998665433 28999999999999998875
Q ss_pred CcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCC-CEEEEEeCCCcEEEEECcCC
Q 006825 410 GRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDG-RYLASAGEDCVIHVWQVVES 488 (630)
Q Consensus 410 h~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG-~~LASgS~DgtIrVWDl~tg 488 (630)
+|+.|++|++||+.+++ +++++.+|.+.|++++|+|++ .+|+||+.|++|+|||+.++
T Consensus 144 ----------------sgs~d~~i~iwd~~~~~-----~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~ 202 (344)
T 4gqb_B 144 ----------------SGSKDICIKVWDLAQQV-----VLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCP 202 (344)
T ss_dssp ----------------EEETTSCEEEEETTTTE-----EEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSS
T ss_pred ----------------EEeCCCeEEEEECCCCc-----EEEEEcCcCCceEEEEecCCCCCceeeecccccccccccccc
Confidence 45667789999998764 578899999999999999988 48999999999999999999
Q ss_pred ceeeeeecccccCcccceEEEEECCC-CCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccC
Q 006825 489 ERKGELLEKQEDGHLNMLLLANGSPE-PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGH 566 (630)
Q Consensus 489 ~~~~~l~~~~~~gh~~~V~svafSpd-g~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GH 566 (630)
+....+. ...|...+.+++|+|+ +.++++++.|++| ++|++ +++++.+|.+|
T Consensus 203 ~~~~~~~---~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v-----------------------~~wd~~~~~~~~~~~~h 256 (344)
T 4gqb_B 203 KPASQIG---CSAPGYLPTSLAWHPQQSEVFVFGDENGTV-----------------------SLVDTKSTSCVLSSAVH 256 (344)
T ss_dssp SCEEECC-------CCCEEEEEECSSCTTEEEEEETTSEE-----------------------EEEESCC--CCEEEECC
T ss_pred ceeeeee---cceeeccceeeeecCCCCcceEEeccCCcE-----------------------EEEECCCCcEEEEEcCC
Confidence 8877752 2455667899999995 6788999999999 88888 78999999999
Q ss_pred CCCEEEEEEcCC--CeEEEEECCCcEEEEeCCCCcEEEEEecCCceEEEE-cCCCc-EEEEecce
Q 006825 567 LDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYDISLV-DRLML-RFAYGAFL 627 (630)
Q Consensus 567 s~~V~sLafSPd--~~LaSgS~DgtVrIWDl~tg~~l~t~~H~~~V~sVa-s~~~~-~lAsgs~~ 627 (630)
...|++|+|+|+ .+|+||+.|++|+|||+.+++++....|.+.|++|+ +|++. .+++++.+
T Consensus 257 ~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D 321 (344)
T 4gqb_B 257 SQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWD 321 (344)
T ss_dssp SSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETT
T ss_pred CCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCC
Confidence 999999999998 579999999999999999998876555999999999 77764 56676644
No 10
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=5.7e-35 Score=308.00 Aligned_cols=261 Identities=13% Similarity=0.120 Sum_probs=233.6
Q ss_pred ceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCC-----
Q 006825 332 FEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERD----- 403 (630)
Q Consensus 332 f~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~d----- 403 (630)
..+|.||...|.+++|+| .|+|||.|++++ +||..+++..+.+. .|...|.+++|+|+|+++++++.|+.
T Consensus 57 ~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~-vWd~~~~~~~~~~~-~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 57 RRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVI-VWDSFTTNKEHAVT-MPCTWVMACAYAPSGCAIACGGLDNKCSVYP 134 (354)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSEEE-EEETTTCCEEEEEE-CSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred EEEecCCCCeEEEEEECCCCCEEEEEeCCCeEE-EEECCCCCcceEEe-cCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence 467899999999999998 799999999999 99999999999998 89999999999999999999998861
Q ss_pred ------------CccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc--C
Q 006825 404 ------------TSSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL--D 467 (630)
Q Consensus 404 ------------t~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp--D 467 (630)
...+.+|...|.++.|.++. +++++.|++|++||+.+++ +++++.+|...|.+++|+| +
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~-----~~~~~~~h~~~v~~~~~~~~~~ 209 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQ-----LLQSFHGHGADVLCLDLAPSET 209 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC-----EEEEEECCSSCEEEEEECCCSS
T ss_pred EeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCe-----EEEEEcCCCCCeEEEEEEeCCC
Confidence 11245788999999999887 9999999999999998765 4788999999999999988 5
Q ss_pred CCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccc
Q 006825 468 GRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMV 547 (630)
Q Consensus 468 G~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i 547 (630)
|++|++|+.|++|++||+.+++++..+ .+|...|.+++|+|++.+|++++.|++|
T Consensus 210 g~~l~sgs~Dg~v~~wd~~~~~~~~~~-----~~h~~~v~~v~~~p~~~~l~s~s~D~~v-------------------- 264 (354)
T 2pbi_B 210 GNTFVSGGCDKKAMVWDMRSGQCVQAF-----ETHESDVNSVRYYPSGDAFASGSDDATC-------------------- 264 (354)
T ss_dssp CCEEEEEETTSCEEEEETTTCCEEEEE-----CCCSSCEEEEEECTTSSEEEEEETTSCE--------------------
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEe-----cCCCCCeEEEEEeCCCCEEEEEeCCCeE--------------------
Confidence 789999999999999999999887774 7899999999999999999999999999
Q ss_pred cccEEEeC-CCCceEEeccC--CCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcEE
Q 006825 548 VPETVFAL-SDKPICSFQGH--LDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLRF 621 (630)
Q Consensus 548 ~~~~Vwdl-sgk~l~tL~GH--s~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~l 621 (630)
++|++ .++.+..+..+ ...+.+++|+|+ .+|++|+.|++|+|||+.+++++.++. |...|++++ +|++..|
T Consensus 265 ---~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l 341 (354)
T 2pbi_B 265 ---RLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAF 341 (354)
T ss_dssp ---EEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCE
T ss_pred ---EEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEE
Confidence 77777 44555555543 457899999999 999999999999999999999999998 999999999 9999999
Q ss_pred EEecce
Q 006825 622 AYGAFL 627 (630)
Q Consensus 622 Asgs~~ 627 (630)
++++.+
T Consensus 342 ~sgs~D 347 (354)
T 2pbi_B 342 CSGSWD 347 (354)
T ss_dssp EEEETT
T ss_pred EEEcCC
Confidence 998765
No 11
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.1e-35 Score=314.29 Aligned_cols=275 Identities=13% Similarity=0.075 Sum_probs=216.8
Q ss_pred CceeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecC
Q 006825 259 DSMSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGH 338 (630)
Q Consensus 259 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GH 338 (630)
++|+|||||++|+..|+ +. .++|+ | ..++|+..+|++. ........+|
T Consensus 46 ~~v~fSpDG~~las~s~--------------d~-~~~wd---~-------------~v~~~~~~~~~~~-~~~~~~~~~~ 93 (357)
T 4g56_B 46 GAVRYRRDGALLLAASS--------------LS-SRTWG---G-------------SIWVFKDPEGAPN-ESLCTAGVQT 93 (357)
T ss_dssp EEEEECSSSCEEEEEEC--------------SS-SSSCC---E-------------EEEEESSCC---C-GGGCSEEEEC
T ss_pred EEEEECCCCCEEEEEcC--------------CC-Ccccc---C-------------eEEEEECCCCCcc-eeEecccCCC
Confidence 56899999999955442 11 12332 1 1235555555543 1112456789
Q ss_pred ccceeEEEeec--ceEeecCCCccEecccCCCCceeE----EecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcc
Q 006825 339 SPIVQELMRRQ--NVEEGNKDSFDLNNNGSSGGGMKS----KKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRR 412 (630)
Q Consensus 339 s~~V~~Lafs~--~laSgS~D~tvr~vWD~~tG~~~~----~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~ 412 (630)
...|.+|+|+| .+++++.|++|+ +||+.+++.+. .+. +|...|++|+|+|+|++|+
T Consensus 94 ~~~V~~~~~s~d~~~l~~s~dg~v~-lWd~~~~~~~~~~~~~~~-~h~~~V~~v~~spdg~~l~---------------- 155 (357)
T 4g56_B 94 EAGVTDVAWVSEKGILVASDSGAVE-LWEILEKESLLVNKFAKY-EHDDIVKTLSVFSDGTQAV---------------- 155 (357)
T ss_dssp SSCEEEEEEETTTEEEEEETTSCEE-EC--------CCCCEEEC-CCSSCEEEEEECSSSSEEE----------------
T ss_pred CCCEEEEEEcCCCCEEEEECCCEEE-EeeccccceeEEEeeccC-CCCCCEEEEEECCCCCEEE----------------
Confidence 99999999999 688899999999 99999987543 333 8999999999999998775
Q ss_pred eEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCC-EEEEEeCCCcEEEEECcCCcee
Q 006825 413 SSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGR-YLASAGEDCVIHVWQVVESERK 491 (630)
Q Consensus 413 ~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~-~LASgS~DgtIrVWDl~tg~~~ 491 (630)
+|+.|++|++||..+++ ++..+.+|...|++|+|++++. +|++++.|++|+|||+.+++..
T Consensus 156 -------------sgs~dg~v~iwd~~~~~-----~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~ 217 (357)
T 4g56_B 156 -------------SGGKDFSVKVWDLSQKA-----VLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPA 217 (357)
T ss_dssp -------------EEETTSCEEEEETTTTE-----EEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCB
T ss_pred -------------EEeCCCeEEEEECCCCc-----EEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCcee
Confidence 45667789999998764 5678999999999999999875 8999999999999999998876
Q ss_pred eeeecccccCcccceEEEEECCC-CCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCC
Q 006825 492 GELLEKQEDGHLNMLLLANGSPE-PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDD 569 (630)
Q Consensus 492 ~~l~~~~~~gh~~~V~svafSpd-g~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~ 569 (630)
..+. ...|...+.+++|+|+ +.++++++.|+.| ++|++ +++++.++.+|...
T Consensus 218 ~~~~---~~~~~~~v~~v~~sp~~~~~la~g~~d~~i-----------------------~~wd~~~~~~~~~~~~~~~~ 271 (357)
T 4g56_B 218 TRID---FCASDTIPTSVTWHPEKDDTFACGDETGNV-----------------------SLVNIKNPDSAQTSAVHSQN 271 (357)
T ss_dssp CBCC---CTTCCSCEEEEEECTTSTTEEEEEESSSCE-----------------------EEEESSCGGGCEEECCCSSC
T ss_pred eeee---eccccccccchhhhhcccceEEEeecccce-----------------------eEEECCCCcEeEEEecccee
Confidence 6532 3567778999999998 5788999999999 88888 77899999999999
Q ss_pred EEEEEEcCC--CeEEEEECCCcEEEEeCCCCcEEEEEecCCceEEEE-cC-CCcEEEEecce
Q 006825 570 VLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYDISLV-DR-LMLRFAYGAFL 627 (630)
Q Consensus 570 V~sLafSPd--~~LaSgS~DgtVrIWDl~tg~~l~t~~H~~~V~sVa-s~-~~~~lAsgs~~ 627 (630)
|++|+|+|+ .+|++|+.|++|+|||+.++++++.+.|.+.|++|+ +| ++..|++++.+
T Consensus 272 v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~D 333 (357)
T 4g56_B 272 ITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWD 333 (357)
T ss_dssp EEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETT
T ss_pred EEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCC
Confidence 999999998 589999999999999999999998888999999999 76 68888888754
No 12
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2e-35 Score=313.66 Aligned_cols=265 Identities=12% Similarity=0.107 Sum_probs=229.5
Q ss_pred eeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCC------
Q 006825 333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERD------ 403 (630)
Q Consensus 333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~d------ 403 (630)
.+|.||...|.+|+|+| .|+|||.|++++ +||+.+++....++ +|...|.+++|+|+|+++++++.|+.
T Consensus 60 ~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~-iWd~~~~~~~~~~~-~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~ 137 (380)
T 3iz6_a 60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLI-VWNALTSQKTHAIK-LHCPWVMECAFAPNGQSVACGGLDSACSIFNL 137 (380)
T ss_dssp EEECCCSSCEEEEEECTTSSCEEEEETTSEEE-EEETTTTEEEEEEE-CCCTTCCCCEECTTSSEEEECCSSSCCEEEEC
T ss_pred ecccccccEEEEEEEcCCCCEEEEEeCCCeEE-EEECCCCccceEEe-cCCCCEEEEEECCCCCEEEEeeCCCcEEEEEC
Confidence 78999999999999999 799999999999 99999999999999 99999999999999999999998871
Q ss_pred ------------CccccCCcceEEEeecCCCe---EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc-C
Q 006825 404 ------------TSSEKGGRRSSSATDDSQDV---SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-D 467 (630)
Q Consensus 404 ------------t~s~~gh~~~Vsa~~~s~d~---l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp-D 467 (630)
...+.+|...|.++.+.++. +++|+.|++|++||+.+++....+......+|...|.+++|++ +
T Consensus 138 ~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 217 (380)
T 3iz6_a 138 SSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLN 217 (380)
T ss_dssp CCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSS
T ss_pred CCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCC
Confidence 11267899999998888753 9999999999999998775321111111278999999999987 8
Q ss_pred CCEEEEEeCCCcEEEEECcC-CceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCcc
Q 006825 468 GRYLASAGEDCVIHVWQVVE-SERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHM 546 (630)
Q Consensus 468 G~~LASgS~DgtIrVWDl~t-g~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~ 546 (630)
+++|+||+.|++|+|||+.. +..+.. +.+|...|.+++|+|++.+|++++.|++|
T Consensus 218 ~~~l~sgs~D~~v~~wd~~~~~~~~~~-----~~~h~~~v~~v~~~p~~~~l~s~s~D~~i------------------- 273 (380)
T 3iz6_a 218 ANMFISGSCDTTVRLWDLRITSRAVRT-----YHGHEGDINSVKFFPDGQRFGTGSDDGTC------------------- 273 (380)
T ss_dssp CCEEEEEETTSCEEEEETTTTCCCCEE-----ECCCSSCCCEEEECTTSSEEEEECSSSCE-------------------
T ss_pred CCEEEEEECCCeEEEEECCCCCcceEE-----ECCcCCCeEEEEEecCCCeEEEEcCCCeE-------------------
Confidence 99999999999999999974 345555 47899999999999999999999999999
Q ss_pred ccccEEEeC-CCCceEEeccCC-------CCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEE----e-cCCceEE
Q 006825 547 VVPETVFAL-SDKPICSFQGHL-------DDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIF----S-HSDYDIS 612 (630)
Q Consensus 547 i~~~~Vwdl-sgk~l~tL~GHs-------~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~----~-H~~~V~s 612 (630)
++|++ +++++..+..|. ..|++++|+|+ .+|++|+.|++|+|||+.+++++..+ . |.+.|++
T Consensus 274 ----~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~ 349 (380)
T 3iz6_a 274 ----RLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISC 349 (380)
T ss_dssp ----EEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCE
T ss_pred ----EEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEE
Confidence 77777 666777765543 34899999999 99999999999999999999998887 3 9999999
Q ss_pred EE-cCCCcEEEEecce
Q 006825 613 LV-DRLMLRFAYGAFL 627 (630)
Q Consensus 613 Va-s~~~~~lAsgs~~ 627 (630)
++ +|++..|++++.+
T Consensus 350 l~~s~dg~~l~sgs~D 365 (380)
T 3iz6_a 350 LGLSSDGSALCTGSWD 365 (380)
T ss_dssp EEECSSSSEEEEECTT
T ss_pred EEECCCCCEEEEeeCC
Confidence 99 9999999999865
No 13
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=4e-34 Score=315.66 Aligned_cols=306 Identities=21% Similarity=0.274 Sum_probs=259.6
Q ss_pred ceeecCCCCcccCCCccccccCCCCCcccccccEEEEEC---------------------CCCcEEEEeeecCCCceeEE
Q 006825 260 SMSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNL---------------------DNGKEFVVNEIQEDGTWKKV 318 (630)
Q Consensus 260 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~L---------------------ddG~~~~v~e~~~dg~~~~l 318 (630)
.+.++|+|++|+.. ..++.++||++ .+|+.+++.. .||. .++
T Consensus 185 ~~~~~~~~~~l~~~--------------~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~--~d~~-i~~ 247 (577)
T 2ymu_A 185 GVAFSPDGQTIASA--------------SDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASAS--DDKT-VKL 247 (577)
T ss_dssp EEEECTTSSCEEEE--------------ETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEE--TTSC-EEE
T ss_pred eeeecCCCCEEEEE--------------cCCCEEEEEeCCCcEEEEEecCCCCEEEEEECCCCCEEEEEe--CCCE-EEE
Confidence 47899999999433 34445555553 2333333322 2333 567
Q ss_pred EEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeE
Q 006825 319 KEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKE 395 (630)
Q Consensus 319 ~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~l 395 (630)
|+. +++.+ ..+.+|...|..++|+| .+++++.|++++ +|+. +++.+..+. +|...|.+++|+|+|+++
T Consensus 248 w~~-~~~~~-----~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~-~w~~-~~~~~~~~~-~h~~~v~~~~~~~~~~~l 318 (577)
T 2ymu_A 248 WNR-NGQLL-----QTLTGHSSSVNGVAFRPDGQTIASASDDKTVK-LWNR-NGQLLQTLT-GHSSSVWGVAFSPDGQTI 318 (577)
T ss_dssp ECT-TSCEE-----EEECCCSSCEEEEEECTTSSEEEEEETTSCEE-EEET-TSCEEEEEC-CCSSCEEEEEECTTSSEE
T ss_pred EeC-CCCEE-----EEEecCCCCEEEEEEcCCCCEEEEEeCCCEEE-EEeC-CCcEEEEEe-cCCCCeEEEEECCCCCEE
Confidence 874 45655 78899999999999998 799999999999 9996 677888888 999999999999999999
Q ss_pred EeecCCCC----------CccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEE
Q 006825 396 RRSSDERD----------TSSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIK 463 (630)
Q Consensus 396 asgS~D~d----------t~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVa 463 (630)
++++.|+. .....+|...|.++++++++ +++++.|+.|++|+.... ++.++.+|...|.+|+
T Consensus 319 ~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~------~~~~~~~~~~~v~~~~ 392 (577)
T 2ymu_A 319 ASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ------LLQTLTGHSSSVRGVA 392 (577)
T ss_dssp EEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCC------EEEEEECCSSCEEEEE
T ss_pred EEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCC------EEEEecCCCCCeEEEE
Confidence 99998872 12367899999999999987 899999999999996533 4678899999999999
Q ss_pred EccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccccccccccccc
Q 006825 464 FSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSL 543 (630)
Q Consensus 464 FSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~ 543 (630)
|+|||++|++++.|++|+|||. +++.+..+ .+|...|.+++|+|+++++++++.|+.|
T Consensus 393 ~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~-----~~~~~~v~~~~~s~d~~~l~~~~~d~~v---------------- 450 (577)
T 2ymu_A 393 FSPDGQTIASASDDKTVKLWNR-NGQLLQTL-----TGHSSSVWGVAFSPDDQTIASASDDKTV---------------- 450 (577)
T ss_dssp ECTTSSCEEEEETTSEEEEECT-TCCEEEEE-----ECCSSCEEEEEECTTSSEEEEEETTSEE----------------
T ss_pred ECCCCCEEEEEeCCCEEEEEeC-CCCEEEEe-----cCCCCCeEEEEECCCCCEEEEEcCCCEE----------------
Confidence 9999999999999999999996 45555553 7899999999999999999999999999
Q ss_pred CccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcE
Q 006825 544 DHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLR 620 (630)
Q Consensus 544 d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~ 620 (630)
++|+.+++.+.++.+|...|++++|+|+ .+|++++.|++|+|||. ++++++++. |...|++|+ +|++.+
T Consensus 451 -------~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~ 522 (577)
T 2ymu_A 451 -------KLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQT 522 (577)
T ss_dssp -------EEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSC
T ss_pred -------EEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCE
Confidence 8899989999999999999999999999 99999999999999995 788999998 999999999 899999
Q ss_pred EEEecce
Q 006825 621 FAYGAFL 627 (630)
Q Consensus 621 lAsgs~~ 627 (630)
|++++.+
T Consensus 523 l~s~~~d 529 (577)
T 2ymu_A 523 IASASDD 529 (577)
T ss_dssp EEEEETT
T ss_pred EEEEECc
Confidence 9888654
No 14
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=8.9e-35 Score=302.81 Aligned_cols=229 Identities=17% Similarity=0.168 Sum_probs=210.2
Q ss_pred eeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-------
Q 006825 333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER------- 402 (630)
Q Consensus 333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~------- 402 (630)
..+.||...|.+++|++ .+++++.|++++ +||+.+++++..+. +|...|.+++|+|+|+++++++.++
T Consensus 74 ~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~-lWd~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~ 151 (321)
T 3ow8_A 74 WSLEGHQLGVVSVDISHTLPIAASSSLDAHIR-LWDLENGKQIKSID-AGPVDAWTLAFSPDSQYLATGTHVGKVNIFGV 151 (321)
T ss_dssp EEECCCSSCEEEEEECSSSSEEEEEETTSEEE-EEETTTTEEEEEEE-CCTTCCCCEEECTTSSEEEEECTTSEEEEEET
T ss_pred eeeccCCCCEEEEEECCCCCEEEEEeCCCcEE-EEECCCCCEEEEEe-CCCccEEEEEECCCCCEEEEEcCCCcEEEEEc
Confidence 45789999999999998 799999999999 99999999999998 8999999999999999999999886
Q ss_pred CC----ccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeC
Q 006825 403 DT----SSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE 476 (630)
Q Consensus 403 dt----~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~ 476 (630)
++ ..+..|...|.++++++++ +++|+.|+.|++||+.+++ +++++.+|...|++++|+|++++|++|+.
T Consensus 152 ~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~-----~~~~~~~h~~~v~~l~~spd~~~l~s~s~ 226 (321)
T 3ow8_A 152 ESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGK-----LLHTLEGHAMPIRSLTFSPDSQLLVTASD 226 (321)
T ss_dssp TTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----EEEEECCCSSCCCEEEECTTSCEEEEECT
T ss_pred CCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCc-----EEEEEcccCCceeEEEEcCCCCEEEEEcC
Confidence 11 1256778889999999988 8999999999999998764 46789999999999999999999999999
Q ss_pred CCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-
Q 006825 477 DCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL- 555 (630)
Q Consensus 477 DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl- 555 (630)
|++|+|||+.++.....+ .+|...|.+++|+|++.+|++++.|++| ++|++
T Consensus 227 dg~i~iwd~~~~~~~~~~-----~~h~~~v~~~~~sp~~~~l~s~s~D~~v-----------------------~iwd~~ 278 (321)
T 3ow8_A 227 DGYIKIYDVQHANLAGTL-----SGHASWVLNVAFCPDDTHFVSSSSDKSV-----------------------KVWDVG 278 (321)
T ss_dssp TSCEEEEETTTCCEEEEE-----CCCSSCEEEEEECTTSSEEEEEETTSCE-----------------------EEEETT
T ss_pred CCeEEEEECCCcceeEEE-----cCCCCceEEEEECCCCCEEEEEeCCCcE-----------------------EEEeCC
Confidence 999999999998877774 7899999999999999999999999999 88888
Q ss_pred CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCC
Q 006825 556 SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLS 596 (630)
Q Consensus 556 sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~ 596 (630)
+++++.++.+|...|++++|+|+ .+|++++.|++|+|||+.
T Consensus 279 ~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 279 TRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 78899999999999999999999 999999999999999974
No 15
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.2e-34 Score=303.71 Aligned_cols=289 Identities=15% Similarity=0.182 Sum_probs=218.1
Q ss_pred ceeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCc
Q 006825 260 SMSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHS 339 (630)
Q Consensus 260 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs 339 (630)
.+++||||++| +++..++.++||+++.++.... .....||.
T Consensus 21 ~l~~sp~g~~l--------------as~~~D~~i~iw~~~~~~~~~~-------------------------~~~~~~h~ 61 (345)
T 3fm0_A 21 FLAWNPAGTLL--------------ASCGGDRRIRIWGTEGDSWICK-------------------------SVLSEGHQ 61 (345)
T ss_dssp EEEECTTSSCE--------------EEEETTSCEEEEEEETTEEEEE-------------------------EEECSSCS
T ss_pred EEEECCCCCEE--------------EEEcCCCeEEEEEcCCCcceee-------------------------eeeccccC
Confidence 37899999999 5566677888888755432110 01236899
Q ss_pred cceeEEEeec---ceEeecCCCccEecccCCCCc--eeEEecCCccCCEEEEEEcCCCCeEEeecCCC-----C--C---
Q 006825 340 PIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGG--MKSKKKGSWFKSIRTVASSVTGHKERRSSDER-----D--T--- 404 (630)
Q Consensus 340 ~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~--~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-----d--t--- 404 (630)
..|.+|+|+| +|++|+.|++++ +||..++. ++.++. +|...|.+|+|+|+|++|++++.|+ + .
T Consensus 62 ~~v~~~~~sp~g~~l~s~s~D~~v~-iw~~~~~~~~~~~~~~-~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~ 139 (345)
T 3fm0_A 62 RTVRKVAWSPCGNYLASASFDATTC-IWKKNQDDFECVTTLE-GHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE 139 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEE-EEEECCC-EEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSC
T ss_pred CcEEEEEECCCCCEEEEEECCCcEE-EEEccCCCeEEEEEcc-CCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCC
Confidence 9999999999 799999999999 99998774 567887 9999999999999999999999987 1 1
Q ss_pred ----ccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCC
Q 006825 405 ----SSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDC 478 (630)
Q Consensus 405 ----~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~Dg 478 (630)
..+.+|...|.++.+++++ +++++.|++|++|+....+. .+..++.+|...|++|+|+|+|++||+|+.|+
T Consensus 140 ~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~---~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~ 216 (345)
T 3fm0_A 140 YECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDW---VCCATLEGHESTVWSLAFDPSGQRLASCSDDR 216 (345)
T ss_dssp EEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEE---EEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred eEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCE---EEEEEecCCCCceEEEEECCCCCEEEEEeCCC
Confidence 1267899999999999987 99999999999999865532 35678999999999999999999999999999
Q ss_pred cEEEEECcCCceee-----------eeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccc
Q 006825 479 VIHVWQVVESERKG-----------ELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMV 547 (630)
Q Consensus 479 tIrVWDl~tg~~~~-----------~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i 547 (630)
+|+||++....... ..+......|...|..++|+|++.++++++.|+.|++|+.........
T Consensus 217 ~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~------- 289 (345)
T 3fm0_A 217 TVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQ------- 289 (345)
T ss_dssp CEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTS-------
T ss_pred eEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcce-------
Confidence 99999974322110 000001133888999999999999999999999995554322100000
Q ss_pred cccEEEeCCCCceEEeccCCCCEEEEEEcCC--CeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825 548 VPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIFS 605 (630)
Q Consensus 548 ~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd--~~LaSgS~DgtVrIWDl~tg~~l~t~~ 605 (630)
..+ ......+.+|...|++|+|+|+ .+||||+.||+|+||++.+++.+..+.
T Consensus 290 ---~~~---~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~~ 343 (345)
T 3fm0_A 290 ---PTF---SLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHHHH 343 (345)
T ss_dssp ---CCE---EEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC--------
T ss_pred ---eeE---EEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCccccc
Confidence 000 0012334689999999999998 599999999999999999988766543
No 16
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-34 Score=298.21 Aligned_cols=276 Identities=12% Similarity=0.011 Sum_probs=216.8
Q ss_pred cceeeecCccceeEEEeec-ceEeecCCCccEecccCCCC--ceeEEe-cCCccCCEEEEEEcCCCCeEEeecCCC----
Q 006825 331 EFEMCVGHSPIVQELMRRQ-NVEEGNKDSFDLNNNGSSGG--GMKSKK-KGSWFKSIRTVASSVTGHKERRSSDER---- 402 (630)
Q Consensus 331 ef~~l~GHs~~V~~Lafs~-~laSgS~D~tvr~vWD~~tG--~~~~~l-k~gH~~~V~sVAfSpdG~~lasgS~D~---- 402 (630)
.+.++.||...|++++|+| .||+|+.|++++ +||+.++ ..+..+ ..+|...|++|+|+|+|++|++++.|+
T Consensus 6 ~~~~~~~h~~~v~~~~~s~~~las~~~D~~i~-lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~i 84 (330)
T 2hes_X 6 LIKSLKLYKEKIWSFDFSQGILATGSTDRKIK-LVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSI 84 (330)
T ss_dssp EEEEEECCSSCEEEEEEETTEEEEEESSSCEE-EEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred cceeeccCCCceeeeccCCCEEEEEcCCCEEE-EEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEE
Confidence 3478999999999999999 899999999999 9999886 455566 424999999999999999999999887
Q ss_pred -CC-------------ccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc
Q 006825 403 -DT-------------SSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL 466 (630)
Q Consensus 403 -dt-------------~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp 466 (630)
+. ..+.+|...|.+++|++++ +++++.|++|++||+.... ....++..+.+|...|.+|+|+|
T Consensus 85 w~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~-~~~~~~~~~~~h~~~v~~v~~~p 163 (330)
T 2hes_X 85 WAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESG-EEYECISVLQEHSQDVKHVIWHP 163 (330)
T ss_dssp EEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTC-CCCEEEEEECCCSSCEEEEEECS
T ss_pred EEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCC-CCeEEEEEeccCCCceEEEEECC
Confidence 11 1257899999999999987 9999999999999984321 11235678999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECcCC--ceeeeeecccccCcccceEEEEECCC--CCEEEEeeCCCeeeeecccccccccccc
Q 006825 467 DGRYLASAGEDCVIHVWQVVES--ERKGELLEKQEDGHLNMLLLANGSPE--PTSLSPKHLDNHLEKKRRGRSINRKSLS 542 (630)
Q Consensus 467 DG~~LASgS~DgtIrVWDl~tg--~~~~~l~~~~~~gh~~~V~svafSpd--g~~lasgs~Dg~I~i~~~~~~~~~~s~s 542 (630)
++++|+||+.|++|+|||+.++ +++.. +.+|...|.+++|+|+ +.++++++.|++|++|+.......
T Consensus 164 ~~~~l~s~s~D~~i~iW~~~~~~~~~~~~-----~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~---- 234 (330)
T 2hes_X 164 SEALLASSSYDDTVRIWKDYDDDWECVAV-----LNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDED---- 234 (330)
T ss_dssp SSSEEEEEETTSCEEEEEEETTEEEEEEE-----ECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTT----
T ss_pred CCCEEEEEcCCCeEEEEECCCCCeeEEEE-----ccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCcc----
Confidence 9999999999999999998766 34444 4899999999999999 778999999999965554321000
Q ss_pred cCccccccEEEeCCCCceEEecc-CCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCc--EEEEE-e-cCC-ceEEEE-c
Q 006825 543 LDHMVVPETVFALSDKPICSFQG-HLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKT--CLKIF-S-HSD-YDISLV-D 615 (630)
Q Consensus 543 ~d~~i~~~~Vwdlsgk~l~tL~G-Hs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~--~l~t~-~-H~~-~V~sVa-s 615 (630)
. ...| .++..+.+ |...|++++|+++++|++++.|++|+|||+.+++ ++... . |.. .|++++ .
T Consensus 235 --~----~~~~----~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~ 304 (330)
T 2hes_X 235 --D----QQEW----VCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWL 304 (330)
T ss_dssp --S----CEEE----EEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC
T ss_pred --c----ccee----EEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEe
Confidence 0 0000 23445555 9999999999987999999999999999998874 34443 3 877 899999 6
Q ss_pred C--CCcEEEEecce
Q 006825 616 R--LMLRFAYGAFL 627 (630)
Q Consensus 616 ~--~~~~lAsgs~~ 627 (630)
+ .+..|++++.+
T Consensus 305 ~~~~~~~las~s~D 318 (330)
T 2hes_X 305 ELNGKTILATGGDD 318 (330)
T ss_dssp -----CCEEEEETT
T ss_pred cCCCceEEEEecCC
Confidence 6 57778887654
No 17
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=9.2e-34 Score=296.00 Aligned_cols=257 Identities=11% Similarity=0.068 Sum_probs=217.7
Q ss_pred ceeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEEEEee--------------------ecCCCceeEEE
Q 006825 260 SMSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNE--------------------IQEDGTWKKVK 319 (630)
Q Consensus 260 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~~v~e--------------------~~~dg~~~~l~ 319 (630)
+|.++|||++| +++..++.++||++.+++...... .+.|| ..++|
T Consensus 60 ~~~~s~d~~~l--------------~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~-~v~iw 124 (340)
T 1got_B 60 AMHWGTDSRLL--------------LSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDN-ICSIY 124 (340)
T ss_dssp EEEECTTSSEE--------------EEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTC-EEEEE
T ss_pred EEEECCCCCEE--------------EEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCC-eEEEE
Confidence 47999999999 566677889999988776543221 12233 36789
Q ss_pred EcCCCceEeeecceeeecCccceeEEEeec--ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEe
Q 006825 320 EVGTGRQLTIEEFEMCVGHSPIVQELMRRQ--NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERR 397 (630)
Q Consensus 320 dv~TG~~lt~eef~~l~GHs~~V~~Lafs~--~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~las 397 (630)
++.+++.. ......+.||...|..+.|.+ .+++++.|++++ +||+.+++.+.++. +|...|.+++|+|+|+++
T Consensus 125 ~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~-~wd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l-- 199 (340)
T 1got_B 125 NLKTREGN-VRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCA-LWDIETGQQTTTFT-GHTGDVMSLSLAPDTRLF-- 199 (340)
T ss_dssp ETTTCSBS-CEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEE-EEETTTTEEEEEEC-CCSSCEEEEEECTTSSEE--
T ss_pred ECccCCCc-ceeEEEecCCCccEEEEEECCCCcEEEEECCCcEE-EEECCCCcEEEEEc-CCCCceEEEEECCCCCEE--
Confidence 98876421 122367889999999999988 799999999999 99999999999998 999999999999998776
Q ss_pred ecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCC
Q 006825 398 SSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED 477 (630)
Q Consensus 398 gS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~D 477 (630)
++|+.|++|++||+..+. +++++.+|...|++|+|+|++++|++|+.|
T Consensus 200 ---------------------------~sg~~d~~v~~wd~~~~~-----~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d 247 (340)
T 1got_B 200 ---------------------------VSGACDASAKLWDVREGM-----CRQTFTGHESDINAICFFPNGNAFATGSDD 247 (340)
T ss_dssp ---------------------------EEEETTSCEEEEETTTCS-----EEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ---------------------------EEEeCCCcEEEEECCCCe-----eEEEEcCCcCCEEEEEEcCCCCEEEEEcCC
Confidence 455677889999997664 567899999999999999999999999999
Q ss_pred CcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-C
Q 006825 478 CVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-S 556 (630)
Q Consensus 478 gtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-s 556 (630)
++|+|||+.+++.+..+. ...+...|.+++|+|++.++++++.|+.| ++|++ +
T Consensus 248 ~~v~iwd~~~~~~~~~~~---~~~~~~~v~~~~~s~~g~~l~~g~~d~~i-----------------------~vwd~~~ 301 (340)
T 1got_B 248 ATCRLFDLRADQELMTYS---HDNIICGITSVSFSKSGRLLLAGYDDFNC-----------------------NVWDALK 301 (340)
T ss_dssp SCEEEEETTTTEEEEEEC---CTTCCSCEEEEEECTTSSEEEEEETTSEE-----------------------EEEETTT
T ss_pred CcEEEEECCCCcEEEEEc---cCCcccceEEEEECCCCCEEEEECCCCeE-----------------------EEEEccc
Confidence 999999999887665531 23445679999999999999999999999 88887 7
Q ss_pred CCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEe
Q 006825 557 DKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWH 594 (630)
Q Consensus 557 gk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWD 594 (630)
++.+.++.+|...|++++|+|+ .+|+||+.|++|+|||
T Consensus 302 ~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 302 ADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 7888999999999999999999 8999999999999997
No 18
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.6e-34 Score=305.28 Aligned_cols=221 Identities=17% Similarity=0.099 Sum_probs=179.9
Q ss_pred eEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCC
Q 006825 316 KKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTG 392 (630)
Q Consensus 316 ~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG 392 (630)
.++||+.+|+.+.... ..+.||...|.+|+|+| .|++|+.|++|+ +||+.+++.+.++. +|...|.+++|+|++
T Consensus 105 v~lWd~~~~~~~~~~~-~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~-iwd~~~~~~~~~~~-~h~~~V~~~~~~~~~ 181 (344)
T 4gqb_B 105 VELWELDENETLIVSK-FCKYEHDDIVSTVSVLSSGTQAVSGSKDICIK-VWDLAQQVVLSSYR-AHAAQVTCVAASPHK 181 (344)
T ss_dssp EEEEEECTTSSCEEEE-EEEECCSSCEEEEEECTTSSEEEEEETTSCEE-EEETTTTEEEEEEC-CCSSCEEEEEECSSC
T ss_pred EEEEeccCCCceeEee-ccccCCCCCEEEEEECCCCCEEEEEeCCCeEE-EEECCCCcEEEEEc-CcCCceEEEEecCCC
Confidence 3445555554431111 24569999999999999 799999999999 99999999999999 999999999999987
Q ss_pred CeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEe--cccCcCEEEEEEcc-CCC
Q 006825 393 HKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEI--QAHNGSIWSIKFSL-DGR 469 (630)
Q Consensus 393 ~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL--~gHt~~V~sVaFSp-DG~ 469 (630)
..+ +++++.|++|++||+.+++. ...+ ..|...|.+++|+| +++
T Consensus 182 ~~~----------------------------l~s~s~D~~v~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~p~~~~ 228 (344)
T 4gqb_B 182 DSV----------------------------FLSCSEDNRILLWDTRCPKP-----ASQIGCSAPGYLPTSLAWHPQQSE 228 (344)
T ss_dssp TTE----------------------------EEEEETTSCEEEEETTSSSC-----EEECC----CCCEEEEEECSSCTT
T ss_pred CCc----------------------------eeeeccccccccccccccce-----eeeeecceeeccceeeeecCCCCc
Confidence 532 36777888999999987753 3333 45667899999999 567
Q ss_pred EEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCC-CEEEEeeCCCeeeeecccccccccccccCcccc
Q 006825 470 YLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEP-TSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVV 548 (630)
Q Consensus 470 ~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg-~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~ 548 (630)
+|++|+.|++|+|||+.+++++..+ .+|...|.+++|+|++ ++|++++.|++|
T Consensus 229 ~l~sg~~dg~v~~wd~~~~~~~~~~-----~~h~~~v~~v~fsp~g~~~lasgs~D~~i--------------------- 282 (344)
T 4gqb_B 229 VFVFGDENGTVSLVDTKSTSCVLSS-----AVHSQCVTGLVFSPHSVPFLASLSEDCSL--------------------- 282 (344)
T ss_dssp EEEEEETTSEEEEEESCC--CCEEE-----ECCSSCEEEEEECSSSSCCEEEEETTSCE---------------------
T ss_pred ceEEeccCCcEEEEECCCCcEEEEE-----cCCCCCEEEEEEccCCCeEEEEEeCCCeE---------------------
Confidence 9999999999999999999888874 7999999999999997 689999999999
Q ss_pred ccEEEeCCCCceEEeccCCCCEEEEEEcCC--CeEEEEECCCcEEEEeCCCCcE
Q 006825 549 PETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTC 600 (630)
Q Consensus 549 ~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd--~~LaSgS~DgtVrIWDl~tg~~ 600 (630)
++|++....+..+.+|.+.|++|+|+|+ .+|+|+|.|++|++|++.+...
T Consensus 283 --~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 283 --AVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp --EEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred --EEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 8888855566778999999999999998 4678999999999999987543
No 19
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=6e-34 Score=298.41 Aligned_cols=284 Identities=15% Similarity=0.104 Sum_probs=227.4
Q ss_pred cceeeecCcc-ceeEEEeec---ceEeecCCCccEecccCCCCcee--EEecCCccCCEEEEEEcCCCCeEEeecCCCC-
Q 006825 331 EFEMCVGHSP-IVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMK--SKKKGSWFKSIRTVASSVTGHKERRSSDERD- 403 (630)
Q Consensus 331 ef~~l~GHs~-~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~--~~lk~gH~~~V~sVAfSpdG~~lasgS~D~d- 403 (630)
.+.++.||.. .|+.|+|+| .||+|+.|++|+ +||+.++... ..+..+|...|.+|+|+|+|++|++++.|+.
T Consensus 7 ~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~-iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v 85 (345)
T 3fm0_A 7 LLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIR-IWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATT 85 (345)
T ss_dssp EEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEE-EEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred EeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEE-EEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcE
Confidence 3478899998 999999999 799999999999 9999988643 3343499999999999999999999998871
Q ss_pred ------C------ccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCC
Q 006825 404 ------T------SSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGR 469 (630)
Q Consensus 404 ------t------~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~ 469 (630)
. ..+.+|...|.+++|++++ +++++.|++|++||+...+ ...++..+.+|...|.+++|+|+++
T Consensus 86 ~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~--~~~~~~~~~~h~~~v~~~~~~p~~~ 163 (345)
T 3fm0_A 86 CIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEED--EYECVSVLNSHTQDVKHVVWHPSQE 163 (345)
T ss_dssp EEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTS--CEEEEEEECCCCSCEEEEEECSSSS
T ss_pred EEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCC--CeEEEEEecCcCCCeEEEEECCCCC
Confidence 1 2267899999999999987 9999999999999987653 2345678899999999999999999
Q ss_pred EEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccc
Q 006825 470 YLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVP 549 (630)
Q Consensus 470 ~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~ 549 (630)
+|++|+.|++|+|||+.++..... ..+.+|...|.+++|+|++++|++++.|++|++|+.........+....
T Consensus 164 ~l~s~s~d~~i~~w~~~~~~~~~~---~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~---- 236 (345)
T 3fm0_A 164 LLASASYDDTVKLYREEEDDWVCC---ATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSG---- 236 (345)
T ss_dssp CEEEEETTSCEEEEEEETTEEEEE---EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC-----
T ss_pred EEEEEeCCCcEEEEEecCCCEEEE---EEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeec----
Confidence 999999999999999987653321 1147999999999999999999999999999888753211110000000
Q ss_pred cEEEeCCCCceEEecc-CCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCc--------EE-EEEe-cCCceEEEE-cC
Q 006825 550 ETVFALSDKPICSFQG-HLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKT--------CL-KIFS-HSDYDISLV-DR 616 (630)
Q Consensus 550 ~~Vwdlsgk~l~tL~G-Hs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~--------~l-~t~~-H~~~V~sVa-s~ 616 (630)
.+...+++.++.+ |...|++++|+|+ .+|++++.|++|+||+...+. .. ..+. |...|++|+ +|
T Consensus 237 ---~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p 313 (345)
T 3fm0_A 237 ---SDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNP 313 (345)
T ss_dssp -----CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECS
T ss_pred ---cCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeC
Confidence 0011245667776 8999999999999 999999999999999987642 11 2223 999999999 88
Q ss_pred CC-cEEEEecce
Q 006825 617 LM-LRFAYGAFL 627 (630)
Q Consensus 617 ~~-~~lAsgs~~ 627 (630)
.+ ..+++++.+
T Consensus 314 ~~~~~laS~s~D 325 (345)
T 3fm0_A 314 KEPGLLASCSDD 325 (345)
T ss_dssp SSTTEEEEEETT
T ss_pred CCceEEEEcCCC
Confidence 76 488888654
No 20
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.1e-33 Score=295.43 Aligned_cols=240 Identities=14% Similarity=0.122 Sum_probs=190.7
Q ss_pred eeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-----CC
Q 006825 333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-----DT 404 (630)
Q Consensus 333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-----dt 404 (630)
..+.||...|.+|+|+| .+++|+.|++++ +||+.+++.+.++. +|...|.+|+|+|+|+++++++.|+ +.
T Consensus 70 ~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~-lwd~~~~~~~~~~~-~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~ 147 (343)
T 2xzm_R 70 KALTGHNHFVSDLALSQENCFAISSSWDKTLR-LWDLRTGTTYKRFV-GHQSEVYSVAFSPDNRQILSAGAEREIKLWNI 147 (343)
T ss_dssp EEECCCSSCEEEEEECSSTTEEEEEETTSEEE-EEETTSSCEEEEEE-CCCSCEEEEEECSSTTEEEEEETTSCEEEEES
T ss_pred chhccCCCceEEEEECCCCCEEEEEcCCCcEE-EEECCCCcEEEEEc-CCCCcEEEEEECCCCCEEEEEcCCCEEEEEec
Confidence 67899999999999998 799999999999 99999999999999 9999999999999999999999887 21
Q ss_pred c--------cccCCcceEEEeecCCC------------eEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEE
Q 006825 405 S--------SEKGGRRSSSATDDSQD------------VSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKF 464 (630)
Q Consensus 405 ~--------s~~gh~~~Vsa~~~s~d------------~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaF 464 (630)
. ...+|...|.++.++++ .+++++.|++|++||... .....+.+|...|++++|
T Consensus 148 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~------~~~~~~~~h~~~v~~~~~ 221 (343)
T 2xzm_R 148 LGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF------QIRYTFKAHESNVNHLSI 221 (343)
T ss_dssp SSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT------EEEEEEECCSSCEEEEEE
T ss_pred cCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC------ceeEEEcCccccceEEEE
Confidence 1 13378889999999876 389999999999999532 245678999999999999
Q ss_pred ccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccC
Q 006825 465 SLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLD 544 (630)
Q Consensus 465 SpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d 544 (630)
+|+|++|++|+.|++|+|||+......... ..+...|.+++|+|++.+++++ .|+.|++|+........
T Consensus 222 s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~-----~~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~----- 290 (343)
T 2xzm_R 222 SPNGKYIATGGKDKKLLIWDILNLTYPQRE-----FDAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAP----- 290 (343)
T ss_dssp CTTSSEEEEEETTCEEEEEESSCCSSCSEE-----EECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCS-----
T ss_pred CCCCCEEEEEcCCCeEEEEECCCCccccee-----ecCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCc-----
Confidence 999999999999999999999543322221 1234569999999999887755 67778555543211100
Q ss_pred ccccccEEEeCCCC---ceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCC
Q 006825 545 HMVVPETVFALSDK---PICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK 598 (630)
Q Consensus 545 ~~i~~~~Vwdlsgk---~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg 598 (630)
+..+... ......+|...|++++|+|+ .+|++|+.||+|+||++.++
T Consensus 291 -------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 291 -------VCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp -------EEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred -------eEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 0000000 01112379999999999999 99999999999999998765
No 21
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=6e-33 Score=283.82 Aligned_cols=259 Identities=20% Similarity=0.248 Sum_probs=231.2
Q ss_pred eeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-----C-
Q 006825 333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-----D- 403 (630)
Q Consensus 333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-----d- 403 (630)
.++.||...|.+++|+| .|++|+.|++++ +|+..+++....+. +|...|.+++|+|+|+++++++.|+ +
T Consensus 17 ~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~-iw~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~ 94 (312)
T 4ery_A 17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIK-IWGAYDGKFEKTIS-GHKLGISDVAWSSDSNLLVSASDDKTLKIWDV 94 (312)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEE-EEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred EEEcccCCcEEEEEECCCCCEEEEeeCCCeEE-EEeCCCcccchhhc-cCCCceEEEEEcCCCCEEEEECCCCEEEEEEC
Confidence 56889999999999999 799999999999 99999999999998 9999999999999999999999987 1
Q ss_pred -C----ccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeC
Q 006825 404 -T----SSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE 476 (630)
Q Consensus 404 -t----~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~ 476 (630)
+ ..+.+|...|.++.+.+++ +++++.|++|++||..+++ ++..+.+|...|.+++|+|++++|++++.
T Consensus 95 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 169 (312)
T 4ery_A 95 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-----CLKTLPAHSDPVSAVHFNRDGSLIVSSSY 169 (312)
T ss_dssp TTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC-----EEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred CCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCE-----EEEEecCCCCcEEEEEEcCCCCEEEEEeC
Confidence 1 2267899999999999887 8999999999999997764 46788999999999999999999999999
Q ss_pred CCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-
Q 006825 477 DCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL- 555 (630)
Q Consensus 477 DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl- 555 (630)
|++|++||+.+++.+..+ ...+...+..++|+|++.++++++.|+.| ++|++
T Consensus 170 d~~i~~wd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~d~~i-----------------------~iwd~~ 222 (312)
T 4ery_A 170 DGLCRIWDTASGQCLKTL----IDDDNPPVSFVKFSPNGKYILAATLDNTL-----------------------KLWDYS 222 (312)
T ss_dssp TSCEEEEETTTCCEEEEE----CCSSCCCEEEEEECTTSSEEEEEETTTEE-----------------------EEEETT
T ss_pred CCcEEEEECCCCceeeEE----eccCCCceEEEEECCCCCEEEEEcCCCeE-----------------------EEEECC
Confidence 999999999998877765 35667789999999999999999999999 88888
Q ss_pred CCCceEEeccCCCCEEE--EEEc-CC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcEEEEec
Q 006825 556 SDKPICSFQGHLDDVLD--LSWS-KS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLRFAYGA 625 (630)
Q Consensus 556 sgk~l~tL~GHs~~V~s--LafS-Pd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~lAsgs 625 (630)
+++++..+.+|...+.+ ..|+ ++ .+|++|+.|++|+|||+.+++++..+. |.+.|.+++ +|.+..+++++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~ 298 (312)
T 4ery_A 223 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 298 (312)
T ss_dssp TTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEE
T ss_pred CCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEE
Confidence 67888899999876433 3444 45 899999999999999999999999998 999999999 89999988875
No 22
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=5.2e-33 Score=288.15 Aligned_cols=231 Identities=17% Similarity=0.204 Sum_probs=204.5
Q ss_pred eeeecCccceeEEEeec----ceEeecCCCccEecccCCC-----CceeEEecCCccCCEEEEEEcCCCCeEEeecCCCC
Q 006825 333 EMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSG-----GGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERD 403 (630)
Q Consensus 333 ~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~t-----G~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~d 403 (630)
.+|.||...|.+|+|+| .|+|||.|++++ +|++.+ +..+.+++ +|...|.+++|+|+|++++
T Consensus 11 ~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~-~W~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~dg~~l~------- 81 (319)
T 3frx_A 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLI-SWKLTGDDQKFGVPVRSFK-GHSHIVQDCTLTADGAYAL------- 81 (319)
T ss_dssp EEECCCSSCEEEEEECSSCTTEEEEEETTSEEE-EEEEEEETTEEEEEEEEEE-CCSSCEEEEEECTTSSEEE-------
T ss_pred EEEccccceEEEEEccCCCccEEEEecCCccEE-EecCCCCCccccccceEEe-CCcccEEEEEECCCCCEEE-------
Confidence 67899999999999987 699999999999 999864 44567788 9999999999999998774
Q ss_pred CccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEE
Q 006825 404 TSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVW 483 (630)
Q Consensus 404 t~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVW 483 (630)
+++.|++|++||+.+++ +++.+.+|...|.+++|+|++++|+||+.|++|+||
T Consensus 82 ----------------------s~s~D~~v~~wd~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vw 134 (319)
T 3frx_A 82 ----------------------SASWDKTLRLWDVATGE-----TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134 (319)
T ss_dssp ----------------------EEETTSEEEEEETTTTE-----EEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred ----------------------EEeCCCEEEEEECCCCC-----eeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 55677899999998775 467899999999999999999999999999999999
Q ss_pred ECcCCceeeeeecccccCcccceEEEEECCC------CCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-C
Q 006825 484 QVVESERKGELLEKQEDGHLNMLLLANGSPE------PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-S 556 (630)
Q Consensus 484 Dl~tg~~~~~l~~~~~~gh~~~V~svafSpd------g~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-s 556 (630)
|+. +.++.. +.+|...|..+++.|. +.++++++.|+.| ++|++ +
T Consensus 135 d~~-~~~~~~-----~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i-----------------------~~wd~~~ 185 (319)
T 3frx_A 135 TIK-GQCLAT-----LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMV-----------------------KAWNLNQ 185 (319)
T ss_dssp ETT-SCEEEE-----ECCCSSCEEEEEECCC------CCEEEEEETTSCE-----------------------EEEETTT
T ss_pred ECC-CCeEEE-----EeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEE-----------------------EEEECCc
Confidence 996 445555 3789999999999985 4589999999999 78888 5
Q ss_pred CCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEecCCceEEEE-cCCCcEEEEeccee
Q 006825 557 DKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYDISLV-DRLMLRFAYGAFLN 628 (630)
Q Consensus 557 gk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~H~~~V~sVa-s~~~~~lAsgs~~n 628 (630)
.+....+.+|...|++++|+|+ .+|++|+.|++|+|||+.+++++.++.+...|.+++ +|++..++++....
T Consensus 186 ~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~ 259 (319)
T 3frx_A 186 FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATG 259 (319)
T ss_dssp TEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETTE
T ss_pred chhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCCC
Confidence 6778889999999999999999 999999999999999999999999999778999999 89999888875443
No 23
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=6.4e-33 Score=285.14 Aligned_cols=240 Identities=13% Similarity=0.077 Sum_probs=205.7
Q ss_pred EEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCe
Q 006825 318 VKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHK 394 (630)
Q Consensus 318 l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~ 394 (630)
+|+..+++.+ ..+.+|...|.+++|.| .|++|+.|++++ +||+.+|+.+.+++ +|...|++|+|+|++++
T Consensus 39 lWd~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~-vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~ 111 (304)
T 2ynn_A 39 LWNYETQVEV-----RSIQVTETPVRAGKFIARKNWIIVGSDDFRIR-VFNYNTGEKVVDFE-AHPDYIRSIAVHPTKPY 111 (304)
T ss_dssp EEETTTTEEE-----EEEECCSSCEEEEEEEGGGTEEEEEETTSEEE-EEETTTCCEEEEEE-CCSSCEEEEEECSSSSE
T ss_pred EEECCCCcee-----EEeeccCCcEEEEEEeCCCCEEEEECCCCEEE-EEECCCCcEEEEEe-CCCCcEEEEEEcCCCCE
Confidence 4444455555 56778999999999998 799999999999 99999999999999 99999999999999999
Q ss_pred EEeecCCC-----C--C-----ccccCCcceEEEeecCC-Ce--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCE
Q 006825 395 ERRSSDER-----D--T-----SSEKGGRRSSSATDDSQ-DV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSI 459 (630)
Q Consensus 395 lasgS~D~-----d--t-----~s~~gh~~~Vsa~~~s~-d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V 459 (630)
+++++.|+ + . ..+.+|...|.+++|++ +. +++|+.|++|++||+..... ......+|...|
T Consensus 112 l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~----~~~~~~~~~~~v 187 (304)
T 2ynn_A 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP----NFTLTTGQERGV 187 (304)
T ss_dssp EEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSC----SEEEECCCTTCE
T ss_pred EEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCc----cceeccCCcCcE
Confidence 99999998 1 1 12678999999999987 33 99999999999999876542 122335677899
Q ss_pred EEEEEcc--CCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccccccc
Q 006825 460 WSIKFSL--DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSIN 537 (630)
Q Consensus 460 ~sVaFSp--DG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~ 537 (630)
..++|+| ++++|++|+.|++|+|||+.+++++..+ .+|...|..++|+|++.+|++++.|++|
T Consensus 188 ~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~-----~~h~~~v~~~~~~p~~~~l~s~s~Dg~i---------- 252 (304)
T 2ynn_A 188 NYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL-----EGHMSNVSFAVFHPTLPIIISGSEDGTL---------- 252 (304)
T ss_dssp EEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEE-----ECCSSCEEEEEECSSSSEEEEEETTSCE----------
T ss_pred EEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceee-----CCCCCCEEEEEECCCCCEEEEEcCCCeE----------
Confidence 9999987 7889999999999999999999888875 7999999999999999999999999999
Q ss_pred ccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC--C-eEEEEECCCcEEEEeCCC
Q 006825 538 RKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS--Q-HLLSSSMDKTVRLWHLSS 597 (630)
Q Consensus 538 ~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd--~-~LaSgS~DgtVrIWDl~t 597 (630)
++|+. +++++.++.+|...|.+++|+|+ . +|++|+.|+ +.+|++..
T Consensus 253 -------------~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~~ 302 (304)
T 2ynn_A 253 -------------KIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLGN 302 (304)
T ss_dssp -------------EEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC-
T ss_pred -------------EEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEecc
Confidence 88888 78899999999999999999997 3 577776555 77888764
No 24
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=6e-33 Score=287.65 Aligned_cols=230 Identities=18% Similarity=0.209 Sum_probs=196.8
Q ss_pred ceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCC-----
Q 006825 332 FEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERD----- 403 (630)
Q Consensus 332 f~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~d----- 403 (630)
+..+.||...|..++|+| +|++|+.|++|+ +||+.+|+.+.++. +|...|.+++|+|++.++++++.|+.
T Consensus 58 ~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~-~wd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd 135 (319)
T 3frx_A 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLR-LWDVATGETYQRFV-GHKSDVMSVDIDKKASMIISGSRDKTIKVWT 135 (319)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSEEE-EEETTTTEEEEEEE-CCSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred ceEEeCCcccEEEEEECCCCCEEEEEeCCCEEE-EEECCCCCeeEEEc-cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 377899999999999998 799999999999 99999999999999 99999999999999999999999972
Q ss_pred C-----ccccCCcceEEEeecCCC--------eEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCE
Q 006825 404 T-----SSEKGGRRSSSATDDSQD--------VSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRY 470 (630)
Q Consensus 404 t-----~s~~gh~~~Vsa~~~s~d--------~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~ 470 (630)
. ..+.+|...|.++.+.+. .+++++.|++|++||+...+ ....+.+|...|++++|+|+|++
T Consensus 136 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-----~~~~~~~h~~~v~~~~~sp~g~~ 210 (319)
T 3frx_A 136 IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ-----IEADFIGHNSNINTLTASPDGTL 210 (319)
T ss_dssp TTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTE-----EEEEECCCCSCEEEEEECTTSSE
T ss_pred CCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch-----hheeecCCCCcEEEEEEcCCCCE
Confidence 1 226789999999888764 48999999999999997653 46778999999999999999999
Q ss_pred EEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCcccccc
Q 006825 471 LASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPE 550 (630)
Q Consensus 471 LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~ 550 (630)
|++|+.|++|+|||+.+++.+..+ . +...|.+++|+|++.+++++..++ +
T Consensus 211 l~s~~~dg~i~iwd~~~~~~~~~~-----~-~~~~v~~~~~sp~~~~la~~~~~~-i----------------------- 260 (319)
T 3frx_A 211 IASAGKDGEIMLWNLAAKKAMYTL-----S-AQDEVFSLAFSPNRYWLAAATATG-I----------------------- 260 (319)
T ss_dssp EEEEETTCEEEEEETTTTEEEEEE-----E-CCSCEEEEEECSSSSEEEEEETTE-E-----------------------
T ss_pred EEEEeCCCeEEEEECCCCcEEEEe-----c-CCCcEEEEEEcCCCCEEEEEcCCC-c-----------------------
Confidence 999999999999999998887774 2 236799999999999999886554 6
Q ss_pred EEEeCC-CCceEEe--------ccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCC
Q 006825 551 TVFALS-DKPICSF--------QGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK 598 (630)
Q Consensus 551 ~Vwdls-gk~l~tL--------~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg 598 (630)
++|++. +..+..+ ..|...|.+++|+|+ ++|++|+.|++|+|||+.++
T Consensus 261 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 261 KVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred EEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 444442 2222222 346778999999999 99999999999999998764
No 25
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.6e-32 Score=289.25 Aligned_cols=239 Identities=14% Similarity=0.099 Sum_probs=204.3
Q ss_pred EEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCC------ceeEEecCCccCCEEEEEE
Q 006825 318 VKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGG------GMKSKKKGSWFKSIRTVAS 388 (630)
Q Consensus 318 l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG------~~~~~lk~gH~~~V~sVAf 388 (630)
+||..+++.+ ..+..|...|..++|+| .+++|+.|++++ +|++..+ .....+. +|...|.+++|
T Consensus 90 vWd~~~~~~~-----~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~-v~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~ 162 (354)
T 2pbi_B 90 VWDSFTTNKE-----HAVTMPCTWVMACAYAPSGCAIACGGLDNKCS-VYPLTFDKNENMAAKKKSVA-MHTNYLSACSF 162 (354)
T ss_dssp EEETTTCCEE-----EEEECSSSCCCEEEECTTSSEEEEESTTSEEE-EEECCCCTTCCSGGGCEEEE-ECSSCEEEEEE
T ss_pred EEECCCCCcc-----eEEecCCCCEEEEEECCCCCEEEEeeCCCCEE-EEEEeccccccccccceeee-ccCCcEEEEEE
Confidence 4444445544 55667888999999999 899999999999 9998654 3456666 89999999999
Q ss_pred cCCCCeEEeecCCC-----C--C----ccccCCcceEEEeecCC--C--eEEEecCCcEEEEEeCCCCcccceeeeeEec
Q 006825 389 SVTGHKERRSSDER-----D--T----SSEKGGRRSSSATDDSQ--D--VSFHGQERVRVRQYGKSCKDLTALYKCQEIQ 453 (630)
Q Consensus 389 SpdG~~lasgS~D~-----d--t----~s~~gh~~~Vsa~~~s~--d--~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~ 453 (630)
+|+++++++++.|+ + + ..+.+|...|.++++.+ + .+++|+.|++|++||+.+++ +++.+.
T Consensus 163 ~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~-----~~~~~~ 237 (354)
T 2pbi_B 163 TNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQ-----CVQAFE 237 (354)
T ss_dssp CSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCC-----EEEEEC
T ss_pred eCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCc-----EEEEec
Confidence 99999999999987 2 2 22678999999888765 3 39999999999999998764 577899
Q ss_pred ccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccc
Q 006825 454 AHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRG 533 (630)
Q Consensus 454 gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~ 533 (630)
+|...|++++|+|++++|++|+.|++|+|||+..+..+..+. ...+...+.+++|+|++.++++++.|++|
T Consensus 238 ~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~---~~~~~~~~~~~~~s~~g~~l~~g~~d~~i------ 308 (354)
T 2pbi_B 238 THESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYS---KESIIFGASSVDFSLSGRLLFAGYNDYTI------ 308 (354)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC---CTTCCSCEEEEEECTTSSEEEEEETTSCE------
T ss_pred CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEc---CCCcccceeEEEEeCCCCEEEEEECCCcE------
Confidence 999999999999999999999999999999999877655431 12344578899999999999999999999
Q ss_pred ccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEe
Q 006825 534 RSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWH 594 (630)
Q Consensus 534 ~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWD 594 (630)
++|++ +++.+..+.+|...|++++|+|+ .+|++|+.|++|+||+
T Consensus 309 -----------------~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 309 -----------------NVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp -----------------EEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred -----------------EEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 88888 78889999999999999999999 9999999999999996
No 26
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=4.1e-32 Score=289.49 Aligned_cols=275 Identities=19% Similarity=0.199 Sum_probs=222.1
Q ss_pred eeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccC------------------CEEEEEEcCCC
Q 006825 334 MCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFK------------------SIRTVASSVTG 392 (630)
Q Consensus 334 ~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~------------------~V~sVAfSpdG 392 (630)
...+|...|.+++|+| +||+|+ |++++ +|++.+|+.+.++. +|.. .|++|+|+|+|
T Consensus 59 ~~~~h~~~V~~v~fspdg~~la~g~-~~~v~-i~~~~~g~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg 135 (393)
T 1erj_A 59 KSLDHTSVVCCVKFSNDGEYLATGC-NKTTQ-VYRVSDGSLVARLS-DDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG 135 (393)
T ss_dssp EEEECSSCCCEEEECTTSSEEEEEC-BSCEE-EEETTTCCEEEEEC-C-----------------CCCCBEEEEEECTTS
T ss_pred EecCCCCEEEEEEECCCCCEEEEEc-CCcEE-EEEecCCCEEEEec-CccccccccccccccccCCCceeEEEEEECCCC
Confidence 3447999999999999 788877 68999 99999999998887 5542 49999999999
Q ss_pred CeEEeecCCC-----C--C----ccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCE
Q 006825 393 HKERRSSDER-----D--T----SSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSI 459 (630)
Q Consensus 393 ~~lasgS~D~-----d--t----~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V 459 (630)
+++++++.|+ + + ..+.+|...|.++.|++++ +++++.|++|++||+.+++ +...+. |...|
T Consensus 136 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~-----~~~~~~-~~~~v 209 (393)
T 1erj_A 136 KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ-----CSLTLS-IEDGV 209 (393)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-----EEEEEE-CSSCE
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCe-----eEEEEE-cCCCc
Confidence 9999999987 2 2 2268899999999999887 9999999999999998764 234444 66789
Q ss_pred EEEEEcc-CCCEEEEEeCCCcEEEEECcCCceeeeeec--ccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccc
Q 006825 460 WSIKFSL-DGRYLASAGEDCVIHVWQVVESERKGELLE--KQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSI 536 (630)
Q Consensus 460 ~sVaFSp-DG~~LASgS~DgtIrVWDl~tg~~~~~l~~--~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~ 536 (630)
.+++|+| +|++|++|+.|++|+|||+.++..+..+.. ....+|...|.+++|+|++.+|++++.|+.|++|+.....
T Consensus 210 ~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~ 289 (393)
T 1erj_A 210 TTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN 289 (393)
T ss_dssp EEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCC
Confidence 9999999 999999999999999999999887766421 1125799999999999999999999999999777654311
Q ss_pred cccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE
Q 006825 537 NRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV 614 (630)
Q Consensus 537 ~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa 614 (630)
.... ......+.+..++.+|...|.+++|+|+ .+|++|+.|++|+|||+.+++++.++. |...|.+++
T Consensus 290 ~~~~----------~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~ 359 (393)
T 1erj_A 290 NKSD----------SKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVA 359 (393)
T ss_dssp ---------------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred Cccc----------ccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEE
Confidence 1000 0000134567788999999999999999 999999999999999999999999998 999999998
Q ss_pred -c------CCCcEEEEecce
Q 006825 615 -D------RLMLRFAYGAFL 627 (630)
Q Consensus 615 -s------~~~~~lAsgs~~ 627 (630)
. |.+..+++++.+
T Consensus 360 ~~~~~~~~p~~~~l~sgs~D 379 (393)
T 1erj_A 360 VANGSSLGPEYNVFATGSGD 379 (393)
T ss_dssp ECSSCTTCTTCEEEEEEETT
T ss_pred ecCCcCcCCCCCEEEEECCC
Confidence 3 367788888754
No 27
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.2e-32 Score=293.71 Aligned_cols=289 Identities=15% Similarity=0.206 Sum_probs=217.1
Q ss_pred ceeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCc
Q 006825 260 SMSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHS 339 (630)
Q Consensus 260 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs 339 (630)
.+.+||||++|+..+ +...+||++.+|+........... ..+. +.+ .......+.
T Consensus 69 ~v~fspdg~~la~g~---------------~~~v~i~~~~~g~~~~~l~~~~~~----~~~~---~~~---~~~~~~~~~ 123 (393)
T 1erj_A 69 CVKFSNDGEYLATGC---------------NKTTQVYRVSDGSLVARLSDDSAA----NKDP---ENL---NTSSSPSSD 123 (393)
T ss_dssp EEEECTTSSEEEEEC---------------BSCEEEEETTTCCEEEEECC---------------------------CCC
T ss_pred EEEECCCCCEEEEEc---------------CCcEEEEEecCCCEEEEecCcccc----cccc---ccc---cccccCCCc
Confidence 389999999993322 357899999999876543321100 0110 111 011223455
Q ss_pred cceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-----CC--cc---
Q 006825 340 PIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-----DT--SS--- 406 (630)
Q Consensus 340 ~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-----dt--~s--- 406 (630)
..|.+++|+| .|++|+.|++|+ +||+.+++.+..++ +|...|.+++|+|+|+++++++.|+ +. ..
T Consensus 124 ~~v~~v~~s~dg~~l~s~~~d~~i~-iwd~~~~~~~~~~~-~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~ 201 (393)
T 1erj_A 124 LYIRSVCFSPDGKFLATGAEDRLIR-IWDIENRKIVMILQ-GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSL 201 (393)
T ss_dssp CBEEEEEECTTSSEEEEEETTSCEE-EEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred eeEEEEEECCCCCEEEEEcCCCeEE-EEECCCCcEEEEEc-cCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEE
Confidence 5799999998 799999999999 99999999999998 9999999999999999999999987 21 11
Q ss_pred ccCCcceEEEeecCC-Ce--EEEecCCcEEEEEeCCCCccccee--eeeEecccCcCEEEEEEccCCCEEEEEeCCCcEE
Q 006825 407 EKGGRRSSSATDDSQ-DV--SFHGQERVRVRQYGKSCKDLTALY--KCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIH 481 (630)
Q Consensus 407 ~~gh~~~Vsa~~~s~-d~--l~Sgs~Dg~VriWd~~~~el~~~~--~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIr 481 (630)
...+...+.++.+++ ++ +++|+.|++|++||..++.+.... ......+|...|++|+|+|+|++|++|+.|++|+
T Consensus 202 ~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~ 281 (393)
T 1erj_A 202 TLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVK 281 (393)
T ss_dssp EEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred EEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEE
Confidence 223455677788876 54 899999999999999876531110 0012268999999999999999999999999999
Q ss_pred EEECcCCceeeee-------ecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEe
Q 006825 482 VWQVVESERKGEL-------LEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFA 554 (630)
Q Consensus 482 VWDl~tg~~~~~l-------~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwd 554 (630)
|||+.+....... ....+.+|...|.+++|+|++.+|++++.|+.| ++|+
T Consensus 282 ~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v-----------------------~iwd 338 (393)
T 1erj_A 282 LWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGV-----------------------LFWD 338 (393)
T ss_dssp EEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEE-----------------------EEEE
T ss_pred EEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeE-----------------------EEEE
Confidence 9999764321110 011246899999999999999999999999999 8888
Q ss_pred C-CCCceEEeccCCCCEEEEEEcC------C-CeEEEEECCCcEEEEeCCCC
Q 006825 555 L-SDKPICSFQGHLDDVLDLSWSK------S-QHLLSSSMDKTVRLWHLSSK 598 (630)
Q Consensus 555 l-sgk~l~tL~GHs~~V~sLafSP------d-~~LaSgS~DgtVrIWDl~tg 598 (630)
. +++++..+.+|...|.+++|++ + .+|+||+.|++|+||++...
T Consensus 339 ~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 339 KKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred CCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 8 7889999999999999999986 5 78999999999999997643
No 28
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.6e-33 Score=298.99 Aligned_cols=268 Identities=16% Similarity=0.159 Sum_probs=219.1
Q ss_pred eeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCcc
Q 006825 261 MSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSP 340 (630)
Q Consensus 261 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~ 340 (630)
|.++|||++| +++..|+.++||++. +++.+ ..+.+|..
T Consensus 72 ~~~sp~~~~l--------------~s~s~D~~v~iWd~~-----------------------~~~~~-----~~~~~h~~ 109 (380)
T 3iz6_a 72 LDWTPEKNWI--------------VSASQDGRLIVWNAL-----------------------TSQKT-----HAIKLHCP 109 (380)
T ss_dssp EEECTTSSCE--------------EEEETTSEEEEEETT-----------------------TTEEE-----EEEECCCT
T ss_pred EEEcCCCCEE--------------EEEeCCCeEEEEECC-----------------------CCccc-----eEEecCCC
Confidence 7899999998 455556667766654 44444 56778999
Q ss_pred ceeEEEeec---ceEeecCCCccEecccCCCCc-------eeEEecCCccCCEEEEEEcCCC-CeEEeecCCC-----CC
Q 006825 341 IVQELMRRQ---NVEEGNKDSFDLNNNGSSGGG-------MKSKKKGSWFKSIRTVASSVTG-HKERRSSDER-----DT 404 (630)
Q Consensus 341 ~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~-------~~~~lk~gH~~~V~sVAfSpdG-~~lasgS~D~-----dt 404 (630)
.|..++|+| .|++|+.|++++ +|++.++. ....+. +|...|.+++|+|++ .++++++.|+ +.
T Consensus 110 ~v~~~~~s~~g~~las~~~d~~v~-iw~~~~~~~~~~~~~~~~~~~-gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~ 187 (380)
T 3iz6_a 110 WVMECAFAPNGQSVACGGLDSACS-IFNLSSQADRDGNMPVSRVLT-GHKGYASSCQYVPDQETRLITGSGDQTCVLWDV 187 (380)
T ss_dssp TCCCCEECTTSSEEEECCSSSCCE-EEECCCCSSCCCSSTTCCBCC-CCSSCCCCCBCCSSSSSCEEEECTTSCEEEECT
T ss_pred CEEEEEECCCCCEEEEeeCCCcEE-EEECCCCccccCCccceeecc-CCCcceEEEEEecCCCCEEEEECCCCcEEEEEc
Confidence 999999999 799999999999 99987643 334556 999999999999964 5799999987 21
Q ss_pred --cc---------ccCCcceEEEeecCC---CeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCE
Q 006825 405 --SS---------EKGGRRSSSATDDSQ---DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRY 470 (630)
Q Consensus 405 --~s---------~~gh~~~Vsa~~~s~---d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~ 470 (630)
+. ..+|...|.++.+.+ ..+++|+.|++|++||+.... ..++++.+|.+.|++|+|+|+|++
T Consensus 188 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~----~~~~~~~~h~~~v~~v~~~p~~~~ 263 (380)
T 3iz6_a 188 TTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS----RAVRTYHGHEGDINSVKFFPDGQR 263 (380)
T ss_dssp TTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC----CCCEEECCCSSCCCEEEECTTSSE
T ss_pred CCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC----cceEEECCcCCCeEEEEEecCCCe
Confidence 11 267889999988865 349999999999999986432 246789999999999999999999
Q ss_pred EEEEeCCCcEEEEECcCCceeeeeeccc--ccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCcccc
Q 006825 471 LASAGEDCVIHVWQVVESERKGELLEKQ--EDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVV 548 (630)
Q Consensus 471 LASgS~DgtIrVWDl~tg~~~~~l~~~~--~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~ 548 (630)
|+||+.|++|+|||+.++..+..+.... ...+...|.+++|+|++.++++++.|+.|
T Consensus 264 l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i--------------------- 322 (380)
T 3iz6_a 264 FGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDC--------------------- 322 (380)
T ss_dssp EEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCE---------------------
T ss_pred EEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCE---------------------
Confidence 9999999999999999998776653111 12233458899999999999999999999
Q ss_pred ccEEEeC-CCCceEEe----ccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCc
Q 006825 549 PETVFAL-SDKPICSF----QGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKT 599 (630)
Q Consensus 549 ~~~Vwdl-sgk~l~tL----~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~ 599 (630)
++|+. .++.+..+ .+|...|++++|+|+ .+|+||+.|++|+||++..++
T Consensus 323 --~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 323 --YVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp --EEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred --EEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 78887 66777776 689999999999999 999999999999999998754
No 29
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=7.7e-32 Score=275.45 Aligned_cols=260 Identities=16% Similarity=0.173 Sum_probs=220.6
Q ss_pred eeeecCccceeEEEeec----ceEeecCCCccEecccCCCCc-----eeEEecCCccCCEEEEEEcCCCCeEEeecCCCC
Q 006825 333 EMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGG-----MKSKKKGSWFKSIRTVASSVTGHKERRSSDERD 403 (630)
Q Consensus 333 ~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~-----~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~d 403 (630)
.+|.||+..|++|+|+| .|+|||.|++|+ +||+.+++ +.++++ +|...|.+++|+|+|+++++++.|+.
T Consensus 32 ~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~-vWd~~~~~~~~~~~~~~l~-~h~~~V~~~~~s~dg~~l~s~~~d~~ 109 (340)
T 4aow_A 32 GTLKGHNGWVTQIATTPQFPDMILSASRDKTII-MWKLTRDETNYGIPQRALR-GHSHFVSDVVISSDGQFALSGSWDGT 109 (340)
T ss_dssp EEECCCSSCEEEEEECTTCTTEEEEEETTSCEE-EEEECCSSSCSEEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred EEECCccCCEEEEEEeCCCCCEEEEEcCCCeEE-EEECCCCCcccceeeEEEe-CCCCCEEEEEECCCCCEEEEEccccc
Confidence 57899999999999997 699999999999 99987654 566777 99999999999999999999999871
Q ss_pred -----------CccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCC--
Q 006825 404 -----------TSSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDG-- 468 (630)
Q Consensus 404 -----------t~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG-- 468 (630)
......+...+....+.+.. +++++.|+.+++|+...... ....+.+|...|..++|++++
T Consensus 110 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~ 185 (340)
T 4aow_A 110 LRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCK----YTVQDESHSEWVSCVRFSPNSSN 185 (340)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE----EEECSSSCSSCEEEEEECSCSSS
T ss_pred ceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCce----EEEEeccccCcccceEEccCCCC
Confidence 11144555566666666655 89999999999999865432 345578999999999999865
Q ss_pred CEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCcccc
Q 006825 469 RYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVV 548 (630)
Q Consensus 469 ~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~ 548 (630)
.++++++.|++|++||+.+++.+..+ .+|...|.+++|+|++++|++++.|+.|
T Consensus 186 ~~~~s~~~d~~i~i~d~~~~~~~~~~-----~~h~~~v~~~~~s~~~~~l~s~s~Dg~i--------------------- 239 (340)
T 4aow_A 186 PIIVSCGWDKLVKVWNLANCKLKTNH-----IGHTGYLNTVTVSPDGSLCASGGKDGQA--------------------- 239 (340)
T ss_dssp CEEEEEETTSCEEEEETTTTEEEEEE-----CCCSSCEEEEEECTTSSEEEEEETTCEE---------------------
T ss_pred cEEEEEcCCCEEEEEECCCCceeeEe-----cCCCCcEEEEEECCCCCEEEEEeCCCeE---------------------
Confidence 58899999999999999998887774 7899999999999999999999999999
Q ss_pred ccEEEeC-CCCceEEeccCCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEe----------cCCceEEEE-cC
Q 006825 549 PETVFAL-SDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS----------HSDYDISLV-DR 616 (630)
Q Consensus 549 ~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~l~t~~----------H~~~V~sVa-s~ 616 (630)
++|++ +.+++..+.+| ..|.+++|+|++++++++.|++|+|||+.++.++..+. |...|++|+ ++
T Consensus 240 --~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 316 (340)
T 4aow_A 240 --MLWDLNEGKHLYTLDGG-DIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSA 316 (340)
T ss_dssp --EEEETTTTEEEEEEECS-SCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECT
T ss_pred --EEEEeccCceeeeecCC-ceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECC
Confidence 78888 56777777755 68999999999888888899999999999988877652 788999999 99
Q ss_pred CCcEEEEecce
Q 006825 617 LMLRFAYGAFL 627 (630)
Q Consensus 617 ~~~~lAsgs~~ 627 (630)
++.+|++++.+
T Consensus 317 dg~~l~sgs~D 327 (340)
T 4aow_A 317 DGQTLFAGYTD 327 (340)
T ss_dssp TSSEEEEEETT
T ss_pred CCCEEEEEeCC
Confidence 99999998754
No 30
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-32 Score=284.83 Aligned_cols=305 Identities=13% Similarity=0.104 Sum_probs=242.8
Q ss_pred ceeecCCCC-cccCCCccccccCCCCCcccccccEEEEEC----CCCcEEEEeeecCCCceeEEEEcCCCceEeeeccee
Q 006825 260 SMSINGNGN-YIGNSGEVVEDFDGNGTAGVAEQGCLIKNL----DNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEM 334 (630)
Q Consensus 260 ~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~I~~L----ddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~ 334 (630)
++.++|+|+ +| +++..++.++||++ ++|+.+.-... ...+...-. ....
T Consensus 50 ~~~~s~~~~~~l--------------~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-----~~~~~~~~~-------~~~~ 103 (425)
T 1r5m_A 50 SSTWNPLDESIL--------------AYGEKNSVARLARIVETDQEGKKYWKLTI-----IAELRHPFA-------LSAS 103 (425)
T ss_dssp EEEECSSCTTEE--------------EEEETBTEEEEEEEEEC------CEEEEE-----EEEEECCCC-------CC--
T ss_pred EEEECCCCCcEE--------------EEecCCceEEEEEEecccCCccccccccc-----ccccccccc-------cccc
Confidence 489999999 88 55567788999999 77763110000 000100000 1122
Q ss_pred eecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCC-------C
Q 006825 335 CVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERD-------T 404 (630)
Q Consensus 335 l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~d-------t 404 (630)
..+|...|.+++|+| .|++|+.|++++ +|| .+++.+..+. +|...|.+++|+|+|+++++++.|+. +
T Consensus 104 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~-i~~-~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 180 (425)
T 1r5m_A 104 SGKTTNQVTCLAWSHDGNSIVTGVENGELR-LWN-KTGALLNVLN-FHRAPIVSVKWNKDGTHIISMDVENVTILWNVIS 180 (425)
T ss_dssp ----CBCEEEEEECTTSSEEEEEETTSCEE-EEE-TTSCEEEEEC-CCCSCEEEEEECTTSSEEEEEETTCCEEEEETTT
T ss_pred ccCCCCceEEEEEcCCCCEEEEEeCCCeEE-EEe-CCCCeeeecc-CCCccEEEEEECCCCCEEEEEecCCeEEEEECCC
Confidence 356889999999998 799999999999 999 7888999998 99999999999999999999998871 1
Q ss_pred cc----ccCCcce---------------EEEeecCCCe-EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEE
Q 006825 405 SS----EKGGRRS---------------SSATDDSQDV-SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKF 464 (630)
Q Consensus 405 ~s----~~gh~~~---------------Vsa~~~s~d~-l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaF 464 (630)
.. ...+... +.++.+.++. +++++.++.|++|+...++ .+..+.+|...|.+++|
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~-----~~~~~~~~~~~i~~~~~ 255 (425)
T 1r5m_A 181 GTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKT-----PTGKLIGHHGPISVLEF 255 (425)
T ss_dssp TEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSS-----CSEEECCCSSCEEEEEE
T ss_pred CcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCc-----eeeeeccCCCceEEEEE
Confidence 11 2333333 6666666666 8999999999999998764 35678899999999999
Q ss_pred ccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccC
Q 006825 465 SLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLD 544 (630)
Q Consensus 465 SpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d 544 (630)
+|++++|++++.|+.|++||+.+++....+ .+|...|.+++|+|++ ++++++.|+.|
T Consensus 256 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-----~~~~~~i~~~~~~~~~-~l~~~~~d~~i----------------- 312 (425)
T 1r5m_A 256 NDTNKLLLSASDDGTLRIWHGGNGNSQNCF-----YGHSQSIVSASWVGDD-KVISCSMDGSV----------------- 312 (425)
T ss_dssp ETTTTEEEEEETTSCEEEECSSSBSCSEEE-----CCCSSCEEEEEEETTT-EEEEEETTSEE-----------------
T ss_pred CCCCCEEEEEcCCCEEEEEECCCCccceEe-----cCCCccEEEEEECCCC-EEEEEeCCCcE-----------------
Confidence 999999999999999999999998877764 6788999999999999 99999999999
Q ss_pred ccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCc--------------------EEE
Q 006825 545 HMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKT--------------------CLK 602 (630)
Q Consensus 545 ~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~--------------------~l~ 602 (630)
++|++ +++++..+.+|...|.+++|+|+ .+|++++.|++|+|||+.+++ ++.
T Consensus 313 ------~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (425)
T 1r5m_A 313 ------RLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYA 386 (425)
T ss_dssp ------EEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEE
T ss_pred ------EEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhh
Confidence 88888 77888999999999999999999 999999999999999999988 899
Q ss_pred EEe-cCC--ceEEEE-cCCCcEEEEecce
Q 006825 603 IFS-HSD--YDISLV-DRLMLRFAYGAFL 627 (630)
Q Consensus 603 t~~-H~~--~V~sVa-s~~~~~lAsgs~~ 627 (630)
.+. |.. .|++++ ++++..+++++..
T Consensus 387 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 415 (425)
T 1r5m_A 387 SYQSSQDNDYIFDLSWNCAGNKISVAYSL 415 (425)
T ss_dssp EECCTTCCCCEEEEEECTTSSEEEEEESS
T ss_pred hhcCcccCCceEEEEccCCCceEEEEecC
Confidence 998 766 999999 8888888887654
No 31
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.7e-32 Score=331.06 Aligned_cols=338 Identities=17% Similarity=0.152 Sum_probs=277.7
Q ss_pred ceeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEEEEee--------------------ecCCCceeEEE
Q 006825 260 SMSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNE--------------------IQEDGTWKKVK 319 (630)
Q Consensus 260 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~~v~e--------------------~~~dg~~~~l~ 319 (630)
.+++||||++| +++..++.++||++.+|+...... .+.|| ..++|
T Consensus 620 ~~~~s~~~~~l--------------~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~-~v~vw 684 (1249)
T 3sfz_A 620 HACFSQDGQRI--------------ASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADK-KVKIW 684 (1249)
T ss_dssp EEEECTTSSEE--------------EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTS-EEEEE
T ss_pred EEEECCCCCEE--------------EEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCC-eEEEE
Confidence 47999999999 555667788888887776543311 12233 47899
Q ss_pred EcCCCceEeeecceeeecCccceeEEEeec-----ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCe
Q 006825 320 EVGTGRQLTIEEFEMCVGHSPIVQELMRRQ-----NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHK 394 (630)
Q Consensus 320 dv~TG~~lt~eef~~l~GHs~~V~~Lafs~-----~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~ 394 (630)
++.+|+.+ .++.+|...|.+++|+| .+++|+.|++++ +||+.+++++.++. +|...|.+++|+|+|++
T Consensus 685 d~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~-vwd~~~~~~~~~~~-~h~~~v~~~~~sp~~~~ 757 (1249)
T 3sfz_A 685 DSATGKLV-----HTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLK-LWDLNQKECRNTMF-GHTNSVNHCRFSPDDEL 757 (1249)
T ss_dssp ETTTCCEE-----EEEECCSSCEEEEEECSSSSCCEEEEEETTSCEE-EEETTSSSEEEEEC-CCSSCEEEEEECSSTTE
T ss_pred ECCCCceE-----EEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEE-EEECCCcchhheec-CCCCCEEEEEEecCCCE
Confidence 99999988 88899999999999998 699999999999 99999999999998 99999999999999999
Q ss_pred EEeecCCC-----CC--cc-----------------------------------------------------------cc
Q 006825 395 ERRSSDER-----DT--SS-----------------------------------------------------------EK 408 (630)
Q Consensus 395 lasgS~D~-----dt--~s-----------------------------------------------------------~~ 408 (630)
+++++.|+ +. .. ..
T Consensus 758 l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~ 837 (1249)
T 3sfz_A 758 LASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHT 837 (1249)
T ss_dssp EEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEEC
T ss_pred EEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcC
Confidence 99999887 11 00 11
Q ss_pred CCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECc
Q 006825 409 GGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVV 486 (630)
Q Consensus 409 gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~ 486 (630)
+|...|.++.+++++ +++++.++.|++|+..++. .+..+.+|...|++++|+|+|++|++++.|++|++|++.
T Consensus 838 ~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~-----~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~ 912 (1249)
T 3sfz_A 838 GHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRL-----KVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK 912 (1249)
T ss_dssp SSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTE-----EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHH
T ss_pred CCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc-----eeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEcc
Confidence 667778888888877 8899999999999997664 567889999999999999999999999999999999965
Q ss_pred CCcee--------------------------------------------------------------------eee----
Q 006825 487 ESERK--------------------------------------------------------------------GEL---- 494 (630)
Q Consensus 487 tg~~~--------------------------------------------------------------------~~l---- 494 (630)
+.... ..+
T Consensus 913 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~ 992 (1249)
T 3sfz_A 913 KVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN 992 (1249)
T ss_dssp HHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTT
T ss_pred ccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCC
Confidence 31000 000
Q ss_pred --ecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccc--------------------cccccCccccccEE
Q 006825 495 --LEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINR--------------------KSLSLDHMVVPETV 552 (630)
Q Consensus 495 --~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~--------------------~s~s~d~~i~~~~V 552 (630)
......+|...|.+++|+|+++++++++.|+.|++|+....... ...+.++.+ ++
T Consensus 993 ~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v---~v 1069 (1249)
T 3sfz_A 993 NRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTV---KV 1069 (1249)
T ss_dssp TSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEE---EE
T ss_pred CceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcE---EE
Confidence 00113568888999999999999999999999999987553211 112223333 79
Q ss_pred EeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcEEEEecce
Q 006825 553 FAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLRFAYGAFL 627 (630)
Q Consensus 553 wdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~lAsgs~~ 627 (630)
|++ +++.+..+.+|...|++++|+|+ .+|++++.|++|+|||+.+++++.++. |...|++++ ++++..+++++.+
T Consensus 1070 wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~d 1148 (1249)
T 3sfz_A 1070 WNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDN 1148 (1249)
T ss_dssp EETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETT
T ss_pred EECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCC
Confidence 998 78999999999999999999999 999999999999999999999999988 999999999 9999999998754
No 32
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.3e-31 Score=279.70 Aligned_cols=236 Identities=17% Similarity=0.189 Sum_probs=200.1
Q ss_pred eecceeeecCccceeEEEe-----ec----ceEeecCCCccEecccCCCC-------ceeEEecCCccCCEEEEEEcCCC
Q 006825 329 IEEFEMCVGHSPIVQELMR-----RQ----NVEEGNKDSFDLNNNGSSGG-------GMKSKKKGSWFKSIRTVASSVTG 392 (630)
Q Consensus 329 ~eef~~l~GHs~~V~~Laf-----s~----~laSgS~D~tvr~vWD~~tG-------~~~~~lk~gH~~~V~sVAfSpdG 392 (630)
++...+|.||+..|++|+| .+ .|+||+.|++|+ +||+.++ .....+. +|...|.+++|+|++
T Consensus 11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~-iWd~~~~~~~~~~~~~~~~l~-~h~~~V~~~~~~~~~ 88 (343)
T 2xzm_R 11 VVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVM-IWKLYEEEQNGYFGIPHKALT-GHNHFVSDLALSQEN 88 (343)
T ss_dssp EEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEE-EEEECSSCCSSBSEEEEEEEC-CCSSCEEEEEECSST
T ss_pred eeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEE-EEECCcCCcccccccccchhc-cCCCceEEEEECCCC
Confidence 3445789999999999999 54 799999999999 9998753 4566777 999999999999998
Q ss_pred CeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEE
Q 006825 393 HKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLA 472 (630)
Q Consensus 393 ~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LA 472 (630)
.++ ++++.|++|++||+.+++ +++.+.+|...|++++|+|++++|+
T Consensus 89 ~~l-----------------------------~s~s~D~~v~lwd~~~~~-----~~~~~~~h~~~v~~v~~sp~~~~l~ 134 (343)
T 2xzm_R 89 CFA-----------------------------ISSSWDKTLRLWDLRTGT-----TYKRFVGHQSEVYSVAFSPDNRQIL 134 (343)
T ss_dssp TEE-----------------------------EEEETTSEEEEEETTSSC-----EEEEEECCCSCEEEEEECSSTTEEE
T ss_pred CEE-----------------------------EEEcCCCcEEEEECCCCc-----EEEEEcCCCCcEEEEEECCCCCEEE
Confidence 776 456677899999998764 4678999999999999999999999
Q ss_pred EEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCC----------CEEEEeeCCCeeeeecccccccccccc
Q 006825 473 SAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEP----------TSLSPKHLDNHLEKKRRGRSINRKSLS 542 (630)
Q Consensus 473 SgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg----------~~lasgs~Dg~I~i~~~~~~~~~~s~s 542 (630)
+|+.|++|+|||+... ....+ ....+|...|.+++|+|++ .++++++.|+.|
T Consensus 135 s~~~d~~i~~wd~~~~-~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i--------------- 196 (343)
T 2xzm_R 135 SAGAEREIKLWNILGE-CKFSS--AEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRL--------------- 196 (343)
T ss_dssp EEETTSCEEEEESSSC-EEEEC--CTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEE---------------
T ss_pred EEcCCCEEEEEeccCC-ceeee--ecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEE---------------
Confidence 9999999999999743 32221 1134788999999999987 789999999999
Q ss_pred cCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCC-CCcEEEEEecCCceEEEE-cCCCc
Q 006825 543 LDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLS-SKTCLKIFSHSDYDISLV-DRLML 619 (630)
Q Consensus 543 ~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~-tg~~l~t~~H~~~V~sVa-s~~~~ 619 (630)
++|+...+.+.++.+|...|++++|+|+ ++|++|+.|++|+|||+. ...+...+.+...|++++ +|++.
T Consensus 197 --------~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~ 268 (343)
T 2xzm_R 197 --------KVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQ 268 (343)
T ss_dssp --------EEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSC
T ss_pred --------EEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCC
Confidence 7888777788889999999999999999 999999999999999994 455666777777899999 88888
Q ss_pred EEEEecc
Q 006825 620 RFAYGAF 626 (630)
Q Consensus 620 ~lAsgs~ 626 (630)
+++.+..
T Consensus 269 ~la~~~d 275 (343)
T 2xzm_R 269 WVAVGTD 275 (343)
T ss_dssp EEEEEES
T ss_pred EEEEECC
Confidence 8876643
No 33
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.5e-32 Score=279.98 Aligned_cols=228 Identities=17% Similarity=0.177 Sum_probs=182.6
Q ss_pred cCccceeEEEeec---ceEeecCCCccEecccCCC-------CceeEEecCCccCCEEEEEEcCCCCeEEeecCCC----
Q 006825 337 GHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSG-------GGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER---- 402 (630)
Q Consensus 337 GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~t-------G~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~---- 402 (630)
+|...|.+|+|+| .|++|+.|++|+ +||+.. ++.+.+++ +|...|.+|+|+|+|++|++++.|+
T Consensus 56 ~h~~~v~~v~~sp~~~~las~s~D~~v~-iw~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~~sp~g~~las~s~D~~v~i 133 (330)
T 2hes_X 56 AHKKAIRSVAWRPHTSLLAAGSFDSTVS-IWAKEESADRTFEMDLLAIIE-GHENEVKGVAWSNDGYYLATCSRDKSVWI 133 (330)
T ss_dssp CCCSCEEEEEECTTSSEEEEEETTSCEE-EEEC-------CCCEEEEEEC-----CEEEEEECTTSCEEEEEETTSCEEE
T ss_pred CccCCEEEEEECCCCCEEEEEeCCCcEE-EEEcccCcCccccceeEEEEc-CCCCcEEEEEECCCCCEEEEEeCCCEEEE
Confidence 3999999999998 799999999999 999853 45667777 9999999999999999999999987
Q ss_pred -CC----------ccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccC--
Q 006825 403 -DT----------SSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLD-- 467 (630)
Q Consensus 403 -dt----------~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpD-- 467 (630)
+. ..+.+|...|.++.|++++ +++++.|++|++|+..... ..++.++.+|.+.|++++|+|+
T Consensus 134 wd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~ 210 (330)
T 2hes_X 134 WETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDD---WECVAVLNGHEGTVWSSDFDKTEG 210 (330)
T ss_dssp EECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTE---EEEEEEECCCSSCEEEEEECCSSS
T ss_pred EeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCC---eeEEEEccCCCCcEEEEEecCCCC
Confidence 22 1257899999999999887 9999999999999975542 2357889999999999999998
Q ss_pred CCEEEEEeCCCcEEEEECcCCc--------eeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccccccccc
Q 006825 468 GRYLASAGEDCVIHVWQVVESE--------RKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRK 539 (630)
Q Consensus 468 G~~LASgS~DgtIrVWDl~tg~--------~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~ 539 (630)
+.+|+||+.|++|+|||+..+. +...+ ...|...|.+++|++++ +|++++.|+.|
T Consensus 211 ~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~----~~~h~~~v~~v~~s~~~-~l~s~~~dg~v------------ 273 (330)
T 2hes_X 211 VFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAIL----PDVHKRQVYNVAWGFNG-LIASVGADGVL------------ 273 (330)
T ss_dssp SCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEEC----CSCCSSCEEEEEECTTS-CEEEEETTSCE------------
T ss_pred eeEEEEEeCCCeEEEEEecCCCccccceeEEeeec----ccccccceEEEEEcCCC-EEEEEeCCCEE------------
Confidence 7899999999999999997642 22221 13488999999999766 78899999999
Q ss_pred ccccCccccccEEEeC-CC--CceEE-eccCCC-CEEEEEEcC--C-CeEEEEECCCcEEEEeCCC
Q 006825 540 SLSLDHMVVPETVFAL-SD--KPICS-FQGHLD-DVLDLSWSK--S-QHLLSSSMDKTVRLWHLSS 597 (630)
Q Consensus 540 s~s~d~~i~~~~Vwdl-sg--k~l~t-L~GHs~-~V~sLafSP--d-~~LaSgS~DgtVrIWDl~t 597 (630)
++|+. ++ +.+.. +.+|.. .|++++|+| + .+|+||+.|++|+|||+.+
T Consensus 274 -----------~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 274 -----------AVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp -----------EEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred -----------EEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 66665 33 22333 468987 899999999 6 8999999999999999865
No 34
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.9e-32 Score=289.32 Aligned_cols=203 Identities=15% Similarity=0.087 Sum_probs=174.3
Q ss_pred eecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCc
Q 006825 335 CVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGR 411 (630)
Q Consensus 335 l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~ 411 (630)
+.+|...|.+|+|+| .|++|+.|++|+ +||+.+++.+..++ +|...|++|+|+|++..
T Consensus 135 ~~~h~~~V~~v~~spdg~~l~sgs~dg~v~-iwd~~~~~~~~~~~-~h~~~v~~v~~s~~~~~----------------- 195 (357)
T 4g56_B 135 KYEHDDIVKTLSVFSDGTQAVSGGKDFSVK-VWDLSQKAVLKSYN-AHSSEVNCVAACPGKDT----------------- 195 (357)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEETTSCEE-EEETTTTEEEEEEC-CCSSCEEEEEECTTCSS-----------------
T ss_pred cCCCCCCEEEEEECCCCCEEEEEeCCCeEE-EEECCCCcEEEEEc-CCCCCEEEEEEccCCCc-----------------
Confidence 468999999999999 799999999999 99999999999999 99999999999998642
Q ss_pred ceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccC-CCEEEEEeCCCcEEEEECcCCce
Q 006825 412 RSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLD-GRYLASAGEDCVIHVWQVVESER 490 (630)
Q Consensus 412 ~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpD-G~~LASgS~DgtIrVWDl~tg~~ 490 (630)
.+++++.|++|++||+.+++... ...+..|...|.+|+|+|+ +.+||+|+.|++|+|||+.+++.
T Consensus 196 -----------~~~s~~~dg~v~~wd~~~~~~~~---~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~ 261 (357)
T 4g56_B 196 -----------IFLSCGEDGRILLWDTRKPKPAT---RIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDS 261 (357)
T ss_dssp -----------CEEEEETTSCEEECCTTSSSCBC---BCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGG
T ss_pred -----------eeeeeccCCceEEEECCCCceee---eeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcE
Confidence 24677788999999998765321 2235678889999999997 57899999999999999999988
Q ss_pred eeeeecccccCcccceEEEEECCCC-CEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCC
Q 006825 491 KGELLEKQEDGHLNMLLLANGSPEP-TSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDD 569 (630)
Q Consensus 491 ~~~l~~~~~~gh~~~V~svafSpdg-~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~ 569 (630)
+..+ .+|...|.+++|+|++ ++|++++.|++| +||++....+..+.+|.+.
T Consensus 262 ~~~~-----~~~~~~v~~l~~sp~~~~~lasgs~D~~i-----------------------~iwd~~~~~~~~~~~H~~~ 313 (357)
T 4g56_B 262 AQTS-----AVHSQNITGLAYSYHSSPFLASISEDCTV-----------------------AVLDADFSEVFRDLSHRDF 313 (357)
T ss_dssp CEEE-----CCCSSCEEEEEECSSSSCCEEEEETTSCE-----------------------EEECTTSCEEEEECCCSSC
T ss_pred eEEE-----eccceeEEEEEEcCCCCCEEEEEeCCCEE-----------------------EEEECCCCcEeEECCCCCC
Confidence 8774 7899999999999997 679999999999 8888843344455689999
Q ss_pred EEEEEEcC-C-CeEEEEECCCcEEEEeCCCC
Q 006825 570 VLDLSWSK-S-QHLLSSSMDKTVRLWHLSSK 598 (630)
Q Consensus 570 V~sLafSP-d-~~LaSgS~DgtVrIWDl~tg 598 (630)
|++|+|+| + .+|+|+|.|++|+||++.+.
T Consensus 314 V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 314 VTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp EEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred EEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 99999999 6 89999999999999999764
No 35
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=3.9e-30 Score=261.34 Aligned_cols=298 Identities=12% Similarity=0.070 Sum_probs=238.0
Q ss_pred CceeecCCCCcccCCCccccccCCCCC--------cccccccEEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeee
Q 006825 259 DSMSINGNGNYIGNSGEVVEDFDGNGT--------AGVAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIE 330 (630)
Q Consensus 259 ~~~~~s~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~e 330 (630)
..+++||||++++.............. ..-......+.-..+|+.+++.. ||. .++|++.+++...
T Consensus 13 ~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~---dg~-i~iw~~~~~~~~~-- 86 (337)
T 1gxr_A 13 YSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG---KGC-VKVWDISHPGNKS-- 86 (337)
T ss_dssp CEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC---BSE-EEEEETTSTTCCS--
T ss_pred eEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC---CCe-EEEEECCCCCcee--
Confidence 348999999998554422111100000 01122233333446777766654 443 6799999887552
Q ss_pred cceee--ecCccceeEEEeec---ceEeecCCCccEecccCCCCc--eeEEecCCccCCEEEEEEcCCCCeEEeecCCCC
Q 006825 331 EFEMC--VGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGG--MKSKKKGSWFKSIRTVASSVTGHKERRSSDERD 403 (630)
Q Consensus 331 ef~~l--~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~--~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~d 403 (630)
.+..+ .+|...|..++|+| .+++++.|++++ +||+.+++ ....+. +|...|.+++|+|+|++++
T Consensus 87 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~-~~d~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~------- 157 (337)
T 1gxr_A 87 PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLS-IWDLAAPTPRIKAELT-SSAPACYALAISPDSKVCF------- 157 (337)
T ss_dssp CSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEE-EEECCCC--EEEEEEE-CSSSCEEEEEECTTSSEEE-------
T ss_pred eeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEE-EEECCCCCcceeeecc-cCCCceEEEEECCCCCEEE-------
Confidence 22333 38999999999998 699999999999 99999987 566676 8999999999999987774
Q ss_pred CccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEE
Q 006825 404 TSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVW 483 (630)
Q Consensus 404 t~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVW 483 (630)
+++.|+.|++|++.+++ .+..+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus 158 ----------------------~~~~dg~v~~~d~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~ 210 (337)
T 1gxr_A 158 ----------------------SCCSDGNIAVWDLHNQT-----LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSW 210 (337)
T ss_dssp ----------------------EEETTSCEEEEETTTTE-----EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ----------------------EEeCCCcEEEEeCCCCc-----eeeeeecccCceEEEEECCCCCEEEEEecCCcEEEE
Confidence 45667789999997764 467889999999999999999999999999999999
Q ss_pred ECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEe
Q 006825 484 QVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSF 563 (630)
Q Consensus 484 Dl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL 563 (630)
|+.+++.+..+ .+...+.+++|+|++.++++++.++.| .+|++.......+
T Consensus 211 d~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~~~~~~~~i-----------------------~~~~~~~~~~~~~ 261 (337)
T 1gxr_A 211 DLREGRQLQQH------DFTSQIFSLGYCPTGEWLAVGMESSNV-----------------------EVLHVNKPDKYQL 261 (337)
T ss_dssp ETTTTEEEEEE------ECSSCEEEEEECTTSSEEEEEETTSCE-----------------------EEEETTSSCEEEE
T ss_pred ECCCCceEeee------cCCCceEEEEECCCCCEEEEEcCCCcE-----------------------EEEECCCCCeEEE
Confidence 99998877663 466789999999999999999999999 7888866666788
Q ss_pred ccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEecCCceEEEE-cCCCcEEEEecce
Q 006825 564 QGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYDISLV-DRLMLRFAYGAFL 627 (630)
Q Consensus 564 ~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~H~~~V~sVa-s~~~~~lAsgs~~ 627 (630)
.+|...|.+++|+|+ ++|++++.|++|++||+.+++++..+.|...|++++ ++++..+++++..
T Consensus 262 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 327 (337)
T 1gxr_A 262 HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGD 327 (337)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETT
T ss_pred cCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecCC
Confidence 999999999999999 999999999999999999999998777999999999 8888888887644
No 36
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.8e-31 Score=263.91 Aligned_cols=255 Identities=13% Similarity=0.106 Sum_probs=224.1
Q ss_pred ceeeecCccceeEEEeec--ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCC------
Q 006825 332 FEMCVGHSPIVQELMRRQ--NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERD------ 403 (630)
Q Consensus 332 f~~l~GHs~~V~~Lafs~--~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~d------ 403 (630)
..++.||...|.+|+|.. .|++|+.|++++ +||+.+++....+. +|...|.+++|+|+|+++++++.|+.
T Consensus 11 ~~~l~~h~~~v~~~~~~~~~~l~s~~~dg~v~-vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~ 88 (313)
T 3odt_A 11 SATLKGHDQDVRDVVAVDDSKVASVSRDGTVR-LWSKDDQWLGTVVY-TGQGFLNSVCYDSEKELLLFGGKDTMINGVPL 88 (313)
T ss_dssp EEEECCCSSCEEEEEEEETTEEEEEETTSEEE-EEEESSSEEEEEEE-ECSSCEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred HHHhhCCCCCcEEEEecCCCEEEEEEcCCcEE-EEECCCCEEEEEee-cCCccEEEEEECCCCCEEEEecCCCeEEEEEe
Confidence 478899999999999932 899999999999 99999999999988 89999999999999999999998861
Q ss_pred --------CccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc-CCCEEEEE
Q 006825 404 --------TSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASA 474 (630)
Q Consensus 404 --------t~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp-DG~~LASg 474 (630)
...+.+|...|.++.+....+++++.|+.|++||. . ..+..+.+|...|.+++|+| ++++|+++
T Consensus 89 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d~--~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 161 (313)
T 3odt_A 89 FATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKE--G-----SLVYNLQAHNASVWDAKVVSFSENKFLTA 161 (313)
T ss_dssp TCCTTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEET--T-----EEEEEEECCSSCEEEEEEEETTTTEEEEE
T ss_pred eecCCCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEcC--C-----cEEEecccCCCceeEEEEccCCCCEEEEE
Confidence 22367899999999997777999999999999992 2 24677899999999999999 99999999
Q ss_pred eCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEe
Q 006825 475 GEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFA 554 (630)
Q Consensus 475 S~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwd 554 (630)
+.|+.|++||. ......+ ...|...+.+++|+|++. +++++.|+.| ++|+
T Consensus 162 ~~d~~i~i~d~--~~~~~~~----~~~~~~~i~~~~~~~~~~-~~~~~~dg~i-----------------------~i~d 211 (313)
T 3odt_A 162 SADKTIKLWQN--DKVIKTF----SGIHNDVVRHLAVVDDGH-FISCSNDGLI-----------------------KLVD 211 (313)
T ss_dssp ETTSCEEEEET--TEEEEEE----CSSCSSCEEEEEEEETTE-EEEEETTSEE-----------------------EEEE
T ss_pred ECCCCEEEEec--CceEEEE----eccCcccEEEEEEcCCCe-EEEccCCCeE-----------------------EEEE
Confidence 99999999994 3444443 234889999999999998 8899999999 8888
Q ss_pred C-CCCceEEeccCCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcEEEEec
Q 006825 555 L-SDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLRFAYGA 625 (630)
Q Consensus 555 l-sgk~l~tL~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~lAsgs 625 (630)
+ +++++..+.+|...|++++|+|+++|++++.|++|+|||+.+++++..+. |...|++++ .+++..++.+.
T Consensus 212 ~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 285 (313)
T 3odt_A 212 MHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGDIIVGSS 285 (313)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECTTSCEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSCEEEEET
T ss_pred CCchhhhhhhhcCCceEEEEEEecCCCEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCCEEEEeC
Confidence 8 68899999999999999999999779999999999999999999999998 999999999 77777665443
No 37
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=6.6e-31 Score=268.68 Aligned_cols=239 Identities=17% Similarity=0.189 Sum_probs=203.4
Q ss_pred EEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCe
Q 006825 318 VKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHK 394 (630)
Q Consensus 318 l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~ 394 (630)
+|+..+|+.+ ..+.+|...|.+++|+| .|++|+.|++++ +||+.+++.+.+++ +|...|.+++|+|++++
T Consensus 49 iw~~~~~~~~-----~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~-vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~ 121 (312)
T 4ery_A 49 IWGAYDGKFE-----KTISGHKLGISDVAWSSDSNLLVSASDDKTLK-IWDVSSGKCLKTLK-GHSNYVFCCNFNPQSNL 121 (312)
T ss_dssp EEETTTCCEE-----EEECCCSSCEEEEEECTTSSEEEEEETTSEEE-EEETTTCCEEEEEE-CCSSCEEEEEECSSSSE
T ss_pred EEeCCCcccc-----hhhccCCCceEEEEEcCCCCEEEEECCCCEEE-EEECCCCcEEEEEc-CCCCCEEEEEEcCCCCE
Confidence 4444455554 56778999999999998 799999999999 99999999999999 99999999999999999
Q ss_pred EEeecCCC-----C--C----ccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeE-ecccCcCEE
Q 006825 395 ERRSSDER-----D--T----SSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQE-IQAHNGSIW 460 (630)
Q Consensus 395 lasgS~D~-----d--t----~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~t-L~gHt~~V~ 460 (630)
+++++.|+ + + ..+..|...|.++.+++++ +++++.|+.|++||...++. +.. ...|...|.
T Consensus 122 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~-----~~~~~~~~~~~~~ 196 (312)
T 4ery_A 122 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC-----LKTLIDDDNPPVS 196 (312)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-----EEEECCSSCCCEE
T ss_pred EEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-----eeEEeccCCCceE
Confidence 99999887 1 1 2267888999999999887 89999999999999987642 333 356778899
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccc---eEEEEECCCCCEEEEeeCCCeeeeeccccccc
Q 006825 461 SIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNM---LLLANGSPEPTSLSPKHLDNHLEKKRRGRSIN 537 (630)
Q Consensus 461 sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~---V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~ 537 (630)
.++|+|++++|++++.|+.|++||+.+++.+..+ .+|... +......+++.++++++.|+.|
T Consensus 197 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i---------- 261 (312)
T 4ery_A 197 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-----TGHKNEKYCIFANFSVTGGKWIVSGSEDNLV---------- 261 (312)
T ss_dssp EEEECTTSSEEEEEETTTEEEEEETTTTEEEEEE-----CSSCCSSSCCCEEEECSSSCEEEECCTTSCE----------
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE-----EecCCceEEEEEEEEeCCCcEEEEECCCCEE----------
Confidence 9999999999999999999999999998877764 455443 2233344678999999999999
Q ss_pred ccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEE--CCCcEEEEeCC
Q 006825 538 RKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSS--MDKTVRLWHLS 596 (630)
Q Consensus 538 ~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS--~DgtVrIWDl~ 596 (630)
++|++ +++.+.++.+|...|.+++|+|+ .+|++++ .|++|+||+..
T Consensus 262 -------------~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 262 -------------YIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp -------------EEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred -------------EEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 88888 67889999999999999999999 9999998 59999999864
No 38
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=3.1e-31 Score=271.66 Aligned_cols=235 Identities=16% Similarity=0.137 Sum_probs=195.9
Q ss_pred eeeecCccceeEEEeec---ceEeecCCCccEecccCCC--CceeEEecCCccCCEEEEEEcCC--CCeEEeecCCCCCc
Q 006825 333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSG--GGMKSKKKGSWFKSIRTVASSVT--GHKERRSSDERDTS 405 (630)
Q Consensus 333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~t--G~~~~~lk~gH~~~V~sVAfSpd--G~~lasgS~D~dt~ 405 (630)
..+.||...|.+++|+| .||+|+.|++|+ +||+.+ ++.+.+++ +|...|.+|+|+++ |++|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~-iw~~~~~~~~~~~~l~-gH~~~V~~v~~s~~~~g~~l---------- 70 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIK-IFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGTIL---------- 70 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEE-EEEBCSSCBCCCEEEC-CCSSCEEEEEECCGGGCSEE----------
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEE-EEecCCCCcEEEEEEc-cccCCeEEEEecCCCcCCEE----------
Confidence 46789999999999998 799999999999 999974 46788898 99999999999863 5555
Q ss_pred cccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccC--CCEEEEEeCCCcEEEE
Q 006825 406 SEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLD--GRYLASAGEDCVIHVW 483 (630)
Q Consensus 406 s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpD--G~~LASgS~DgtIrVW 483 (630)
++++.|++|++||..+++. ..+..+.+|...|.+++|+|+ |.+|++|+.|++|++|
T Consensus 71 -------------------~s~s~D~~v~iWd~~~~~~---~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~w 128 (297)
T 2pm7_B 71 -------------------ASCSYDGKVMIWKEENGRW---SQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVV 128 (297)
T ss_dssp -------------------EEEETTTEEEEEEBSSSCB---CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEE
T ss_pred -------------------EEEcCCCEEEEEEcCCCce---EEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEE
Confidence 5667788999999976642 235678899999999999997 8999999999999999
Q ss_pred ECcCCceeeeeecccccCcccceEEEEECCC-------------CCEEEEeeCCCeeeeecccccccccccccCcccccc
Q 006825 484 QVVESERKGELLEKQEDGHLNMLLLANGSPE-------------PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPE 550 (630)
Q Consensus 484 Dl~tg~~~~~l~~~~~~gh~~~V~svafSpd-------------g~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~ 550 (630)
|+.++...... .+.+|...|.+++|+|+ +++|++++.|++|
T Consensus 129 d~~~~~~~~~~---~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v----------------------- 182 (297)
T 2pm7_B 129 EFKENGTTSPI---IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLV----------------------- 182 (297)
T ss_dssp EBCSSSCBCCE---EEECCSSCEEEEEECCCC------------CCEEEEEETTSCE-----------------------
T ss_pred EecCCCceeee---eeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcE-----------------------
Confidence 99876432111 14789999999999997 5799999999999
Q ss_pred EEEeC-CCC----ceEEeccCCCCEEEEEEcCC----CeEEEEECCCcEEEEeCCCCc---EEEEE--e-cCCceEEEE-
Q 006825 551 TVFAL-SDK----PICSFQGHLDDVLDLSWSKS----QHLLSSSMDKTVRLWHLSSKT---CLKIF--S-HSDYDISLV- 614 (630)
Q Consensus 551 ~Vwdl-sgk----~l~tL~GHs~~V~sLafSPd----~~LaSgS~DgtVrIWDl~tg~---~l~t~--~-H~~~V~sVa- 614 (630)
++|++ +++ ++.+|.+|...|.+|+|+|+ .+|+|++.|++|+|||+.+.. ....+ . |...|++++
T Consensus 183 ~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~ 262 (297)
T 2pm7_B 183 KIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASW 262 (297)
T ss_dssp EEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEE
T ss_pred EEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEE
Confidence 67776 333 56789999999999999997 589999999999999998753 22344 3 889999999
Q ss_pred cCCCcEEEEecce
Q 006825 615 DRLMLRFAYGAFL 627 (630)
Q Consensus 615 s~~~~~lAsgs~~ 627 (630)
+|++..|++++.+
T Consensus 263 s~~g~~las~~~D 275 (297)
T 2pm7_B 263 SLSGNVLALSGGD 275 (297)
T ss_dssp CSSSCCEEEEETT
T ss_pred CCCCCEEEEEcCC
Confidence 8999999888654
No 39
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.7e-31 Score=282.48 Aligned_cols=284 Identities=14% Similarity=0.090 Sum_probs=225.6
Q ss_pred CceeecCCCCcccCCCccccccCCCCCcccccccEEEEECC---------------------CCcEEEEeeecCCCceeE
Q 006825 259 DSMSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLD---------------------NGKEFVVNEIQEDGTWKK 317 (630)
Q Consensus 259 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Ld---------------------dG~~~~v~e~~~dg~~~~ 317 (630)
.++.++|+|++|+ ++..++.++||++. +|+.+++.. .||. .+
T Consensus 60 ~~~~~s~~g~~l~--------------~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~-i~ 122 (420)
T 3vl1_A 60 KGNTFEKVGSHLY--------------KARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGT--TEGD-IK 122 (420)
T ss_dssp TTCEEEEEETTEE--------------EEEETTEEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEE--TTSC-EE
T ss_pred cceeeeecCCeEE--------------EEEcCCcEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEE--CCCC-EE
Confidence 3589999999993 33445566666654 344444332 3444 67
Q ss_pred EEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCe
Q 006825 318 VKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHK 394 (630)
Q Consensus 318 l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~ 394 (630)
+|++.+++.+ ..+.+|...|.+|+|+| .|++|+.|++++ +||+.+++.+.+++ +|...|.+++|+|+|++
T Consensus 123 iwd~~~~~~~-----~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~-iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~ 195 (420)
T 3vl1_A 123 VLDSNFNLQR-----EIDQAHVSEITKLKFFPSGEALISSSQDMQLK-IWSVKDGSNPRTLI-GHRATVTDIAIIDRGRN 195 (420)
T ss_dssp EECTTSCEEE-----EETTSSSSCEEEEEECTTSSEEEEEETTSEEE-EEETTTCCCCEEEE-CCSSCEEEEEEETTTTE
T ss_pred EEeCCCccee-----eecccccCccEEEEECCCCCEEEEEeCCCeEE-EEeCCCCcCceEEc-CCCCcEEEEEEcCCCCE
Confidence 9999998887 67789999999999998 799999999999 99999999999998 99999999999999887
Q ss_pred EEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecc---cCcCEEEE---------
Q 006825 395 ERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQA---HNGSIWSI--------- 462 (630)
Q Consensus 395 lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~g---Ht~~V~sV--------- 462 (630)
++ +++.|++|++||+.+++ +++.+.. |...|.++
T Consensus 196 l~-----------------------------s~~~d~~v~iwd~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~ 241 (420)
T 3vl1_A 196 VL-----------------------------SASLDGTIRLWECGTGT-----TIHTFNRKENPHDGVNSIALFVGTDRQ 241 (420)
T ss_dssp EE-----------------------------EEETTSCEEEEETTTTE-----EEEEECBTTBTTCCEEEEEEEECCCSS
T ss_pred EE-----------------------------EEcCCCcEEEeECCCCc-----eeEEeecCCCCCCCccEEEEecCCcce
Confidence 74 55667789999998764 3455553 44445554
Q ss_pred ------------EEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCC-EEEEeeCCCeeee
Q 006825 463 ------------KFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPT-SLSPKHLDNHLEK 529 (630)
Q Consensus 463 ------------aFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~-~lasgs~Dg~I~i 529 (630)
+|+|+|++|++|+.|++|++||+.+++....+ ..+|...|.+++|+|++. ++++++.|+.|
T Consensus 242 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i-- 315 (420)
T 3vl1_A 242 LHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQL----PSKFTCSCNSLTVDGNNANYIYAGYENGML-- 315 (420)
T ss_dssp CGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEE----CCTTSSCEEEEEECSSCTTEEEEEETTSEE--
T ss_pred eeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEc----ccccCCCceeEEEeCCCCCEEEEEeCCCeE--
Confidence 45789999999999999999999998877775 367889999999999998 99999999999
Q ss_pred ecccccccccccccCccccccEEEeC-CC-CceEEecc-CCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCC--------
Q 006825 530 KRRGRSINRKSLSLDHMVVPETVFAL-SD-KPICSFQG-HLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSK-------- 598 (630)
Q Consensus 530 ~~~~~~~~~~s~s~d~~i~~~~Vwdl-sg-k~l~tL~G-Hs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg-------- 598 (630)
++|++ ++ .++..+.+ |...|.++.|.+.++|++++.|++|+||++...
T Consensus 316 ---------------------~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~ 374 (420)
T 3vl1_A 316 ---------------------AQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESERPAIE 374 (420)
T ss_dssp ---------------------EEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCTTCCSCEEC
T ss_pred ---------------------EEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCCCCCcccee
Confidence 78888 44 44778877 677888887765489999999999999998763
Q ss_pred -cEEEEE-ecCCceEEEE-cCCCc----EEEEecce
Q 006825 599 -TCLKIF-SHSDYDISLV-DRLML----RFAYGAFL 627 (630)
Q Consensus 599 -~~l~t~-~H~~~V~sVa-s~~~~----~lAsgs~~ 627 (630)
.....+ .|...|.+++ .+++. .+++|...
T Consensus 375 ~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g 410 (420)
T 3vl1_A 375 FETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNN 410 (420)
T ss_dssp TTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTT
T ss_pred ccCccEEccCCcceEEEEEccCCCCcceEEEEcCCc
Confidence 112223 3889999999 66666 77777543
No 40
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.3e-30 Score=266.43 Aligned_cols=276 Identities=17% Similarity=0.144 Sum_probs=214.3
Q ss_pred CceeecCC-CCcccCCCccccccCCCCCcccccccEEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeec
Q 006825 259 DSMSINGN-GNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVG 337 (630)
Q Consensus 259 ~~~~~s~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~G 337 (630)
++|+++|+ +++| +++..|+.++||++..+ +.........+.|
T Consensus 42 ~~v~~sp~~~~~l--------------~S~s~D~~i~vWd~~~~-----------------------~~~~~~~~~~l~~ 84 (340)
T 4aow_A 42 TQIATTPQFPDMI--------------LSASRDKTIIMWKLTRD-----------------------ETNYGIPQRALRG 84 (340)
T ss_dssp EEEEECTTCTTEE--------------EEEETTSCEEEEEECCS-----------------------SSCSEEEEEEECC
T ss_pred EEEEEeCCCCCEE--------------EEEcCCCeEEEEECCCC-----------------------CcccceeeEEEeC
Confidence 55677776 4666 44455666777666543 2222222367899
Q ss_pred CccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-----CC-----
Q 006825 338 HSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-----DT----- 404 (630)
Q Consensus 338 Hs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-----dt----- 404 (630)
|...|.+++|+| .|++|+.|++++ +|+...+....... .+...+..+.+++++.++++++.|+ +.
T Consensus 85 h~~~V~~~~~s~dg~~l~s~~~d~~i~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~ 162 (340)
T 4aow_A 85 HSHFVSDVVISSDGQFALSGSWDGTLR-LWDLTTGTTTRRFV-GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCK 162 (340)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEE-EEETTTTEEEEEEE-CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE
T ss_pred CCCCEEEEEECCCCCEEEEEcccccce-EEeecccceeeeec-CCCCceeEEEEeecCccceeecCCCeEEEEEeCCCce
Confidence 999999999998 799999999999 99999999988888 8999999999999999999999887 21
Q ss_pred --ccccCCcceEEEeecCCCe----EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCC
Q 006825 405 --SSEKGGRRSSSATDDSQDV----SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDC 478 (630)
Q Consensus 405 --~s~~gh~~~Vsa~~~s~d~----l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~Dg 478 (630)
....+|...+..+.+..+. +++++.|++|++|+....+ ++..+.+|.+.|++|+|+|++++|++|+.|+
T Consensus 163 ~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg 237 (340)
T 4aow_A 163 YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK-----LKTNHIGHTGYLNTVTVSPDGSLCASGGKDG 237 (340)
T ss_dssp EEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTE-----EEEEECCCSSCEEEEEECTTSSEEEEEETTC
T ss_pred EEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCc-----eeeEecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence 2267788888888877653 7899999999999998764 4678899999999999999999999999999
Q ss_pred cEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCC-C
Q 006825 479 VIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS-D 557 (630)
Q Consensus 479 tIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdls-g 557 (630)
+|+|||+.+.+.+..+ . +...+..+.|+|++.++ +++.|+.|++|+..... .++.+. .
T Consensus 238 ~i~iwd~~~~~~~~~~-----~-~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~--------------~~~~~~~~ 296 (340)
T 4aow_A 238 QAMLWDLNEGKHLYTL-----D-GGDIINALCFSPNRYWL-CAATGPSIKIWDLEGKI--------------IVDELKQE 296 (340)
T ss_dssp EEEEEETTTTEEEEEE-----E-CSSCEEEEEECSSSSEE-EEEETTEEEEEETTTTE--------------EEEEECCC
T ss_pred eEEEEEeccCceeeee-----c-CCceEEeeecCCCCcee-eccCCCEEEEEECCCCe--------------EEEecccc
Confidence 9999999998887764 2 34678999999988765 55578999555433211 111111 1
Q ss_pred CceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCc
Q 006825 558 KPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKT 599 (630)
Q Consensus 558 k~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~ 599 (630)
.....+.+|...|++|+|+|+ ++|++|+.||+|+|||+.+|+
T Consensus 297 ~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 297 VISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp -------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred ceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 122345689999999999999 999999999999999999986
No 41
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-31 Score=312.41 Aligned_cols=309 Identities=12% Similarity=0.021 Sum_probs=226.8
Q ss_pred ceeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEE--------------------------------EEe
Q 006825 260 SMSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEF--------------------------------VVN 307 (630)
Q Consensus 260 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~--------------------------------~v~ 307 (630)
++.++|+|++| +++..++.++||+++.++.. .+.
T Consensus 103 ~v~~sp~g~~l--------------~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~ 168 (902)
T 2oaj_A 103 SIDTDASLDWM--------------LIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVL 168 (902)
T ss_dssp EEECCTTCSEE--------------EEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEE
T ss_pred EEEECCCCCEE--------------EEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEE
Confidence 37999999999 56667888999999877531 111
Q ss_pred eecCCCceeEEEEcCCCceEeeecceeee------------------cCccceeEEEeec---ceEeecCCCccEecccC
Q 006825 308 EIQEDGTWKKVKEVGTGRQLTIEEFEMCV------------------GHSPIVQELMRRQ---NVEEGNKDSFDLNNNGS 366 (630)
Q Consensus 308 e~~~dg~~~~l~dv~TG~~lt~eef~~l~------------------GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~ 366 (630)
....||. . +||+.+++++ .++. +|...|.+++|+| .||+|+.|++++ +||+
T Consensus 169 ~g~~dg~-v-lWd~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~-lWd~ 240 (902)
T 2oaj_A 169 ISYEYVT-L-TYSLVENEIK-----QSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLV-FWDA 240 (902)
T ss_dssp EECSSCE-E-EEETTTTEEE-----EEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEE-EEET
T ss_pred EEeCCCc-E-EEECCCCceE-----EEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEE-EEEC
Confidence 1234554 4 9999999887 3443 3478899999999 799999999999 9999
Q ss_pred CCCceeEEecC----C-------------ccCCEEEEEEc----CCC-CeEEeecCCCCC----------c---------
Q 006825 367 SGGGMKSKKKG----S-------------WFKSIRTVASS----VTG-HKERRSSDERDT----------S--------- 405 (630)
Q Consensus 367 ~tG~~~~~lk~----g-------------H~~~V~sVAfS----pdG-~~lasgS~D~dt----------~--------- 405 (630)
.+|+++..... + |...|.+|+|+ |++ .++++|+.+... .
T Consensus 241 ~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s 320 (902)
T 2oaj_A 241 NSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITS 320 (902)
T ss_dssp TTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCC
T ss_pred CCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccc
Confidence 99988764221 2 45579999995 443 467777544100 0
Q ss_pred -------------c--------------------------------------------------------------c---
Q 006825 406 -------------S--------------------------------------------------------------E--- 407 (630)
Q Consensus 406 -------------s--------------------------------------------------------------~--- 407 (630)
. +
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~ 400 (902)
T 2oaj_A 321 YEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWL 400 (902)
T ss_dssp HHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTB
T ss_pred hhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCccccc
Confidence 0 0
Q ss_pred -------------------------------cCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeee-eEec
Q 006825 408 -------------------------------KGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKC-QEIQ 453 (630)
Q Consensus 408 -------------------------------~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v-~tL~ 453 (630)
.||...+..++|++++ +++|+.|++||+||+.++++...... ..+.
T Consensus 401 ~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~ 480 (902)
T 2oaj_A 401 RPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLS 480 (902)
T ss_dssp TTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHH
T ss_pred CCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeech
Confidence 0111111223445666 89999999999999988754321111 1122
Q ss_pred -----ccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeee-----------------------------------
Q 006825 454 -----AHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGE----------------------------------- 493 (630)
Q Consensus 454 -----gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~----------------------------------- 493 (630)
+|...|++|+|+|||++||+|+.|++|+||++.+++....
T Consensus 481 ~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (902)
T 2oaj_A 481 RTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTG 560 (902)
T ss_dssp HHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTT
T ss_pred hhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCC
Confidence 8999999999999999999999999999999987631000
Q ss_pred -----eecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCce-E-----E
Q 006825 494 -----LLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPI-C-----S 562 (630)
Q Consensus 494 -----l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l-~-----t 562 (630)
.....+.+|...|.+++|+|+| +||+|+.|++| ++|++.+..+ . .
T Consensus 561 ~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv-----------------------~lwd~~~~~~~~~~~~~~ 616 (902)
T 2oaj_A 561 VRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSL-----------------------MLIDRRGPAIIYMENIRE 616 (902)
T ss_dssp CSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEE-----------------------EEEETTTTEEEEEEEGGG
T ss_pred CCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcE-----------------------EEEECCCCeEEEEeehhH
Confidence 0012247899999999999999 99999999999 7777744332 2 2
Q ss_pred ec-cCCCCEEEEEEc-----CC----CeEEEEECCCcEEEEeC---CCCcEEEEEe-c-----CCceEEEE
Q 006825 563 FQ-GHLDDVLDLSWS-----KS----QHLLSSSMDKTVRLWHL---SSKTCLKIFS-H-----SDYDISLV 614 (630)
Q Consensus 563 L~-GHs~~V~sLafS-----Pd----~~LaSgS~DgtVrIWDl---~tg~~l~t~~-H-----~~~V~sVa 614 (630)
+. +|...|++|+|+ || .+|++|+.|++|++||+ .+|+++.+|. | .+.|..++
T Consensus 617 ~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~ 687 (902)
T 2oaj_A 617 ISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKID 687 (902)
T ss_dssp TCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEE
T ss_pred hccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCCCceEEEE
Confidence 43 999999999999 76 59999999999999999 8899998886 4 47777776
No 42
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=6.3e-31 Score=269.37 Aligned_cols=239 Identities=16% Similarity=0.160 Sum_probs=190.8
Q ss_pred ceeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCc
Q 006825 260 SMSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHS 339 (630)
Q Consensus 260 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs 339 (630)
++++||||++| +++..|+.++||+++.+ +++.+ .++.||.
T Consensus 14 ~~~~s~~g~~l--------------as~s~D~~v~iw~~~~~---------------------~~~~~-----~~l~gH~ 53 (297)
T 2pm7_B 14 DAVMDYYGKRM--------------ATCSSDKTIKIFEVEGE---------------------THKLI-----DTLTGHE 53 (297)
T ss_dssp EEEECTTSSEE--------------EEEETTSCEEEEEBCSS---------------------CBCCC-----EEECCCS
T ss_pred EEEECCCCCEE--------------EEEeCCCEEEEEecCCC---------------------CcEEE-----EEEcccc
Confidence 37888999888 55566777888877432 12333 6788999
Q ss_pred cceeEEEeec-----ceEeecCCCccEecccCCCCc--eeEEecCCccCCEEEEEEcCC--CCeEEeecCCCCCccccCC
Q 006825 340 PIVQELMRRQ-----NVEEGNKDSFDLNNNGSSGGG--MKSKKKGSWFKSIRTVASSVT--GHKERRSSDERDTSSEKGG 410 (630)
Q Consensus 340 ~~V~~Lafs~-----~laSgS~D~tvr~vWD~~tG~--~~~~lk~gH~~~V~sVAfSpd--G~~lasgS~D~dt~s~~gh 410 (630)
..|.+|+|++ .|+|||.|++|+ +||+.+++ .+.++. +|...|++|+|+|+ |.++
T Consensus 54 ~~V~~v~~s~~~~g~~l~s~s~D~~v~-iWd~~~~~~~~~~~~~-~h~~~v~~v~~~p~~~g~~l--------------- 116 (297)
T 2pm7_B 54 GPVWRVDWAHPKFGTILASCSYDGKVM-IWKEENGRWSQIAVHA-VHSASVNSVQWAPHEYGPML--------------- 116 (297)
T ss_dssp SCEEEEEECCGGGCSEEEEEETTTEEE-EEEBSSSCBCCCEEEC-CCSSCEEEEEECCGGGCSEE---------------
T ss_pred CCeEEEEecCCCcCCEEEEEcCCCEEE-EEEcCCCceEEEEEee-cCCCceeEEEeCcCCCCcEE---------------
Confidence 9999999964 699999999999 99999885 566777 89999999999997 5555
Q ss_pred cceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccC-------------CCEEEEEeCC
Q 006825 411 RRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLD-------------GRYLASAGED 477 (630)
Q Consensus 411 ~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpD-------------G~~LASgS~D 477 (630)
++++.|++|++|++...... ....+.+|...|.+++|+|+ +++||+|+.|
T Consensus 117 --------------~s~s~d~~v~~wd~~~~~~~---~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D 179 (297)
T 2pm7_B 117 --------------LVASSDGKVSVVEFKENGTT---SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD 179 (297)
T ss_dssp --------------EEEETTSEEEEEEBCSSSCB---CCEEEECCSSCEEEEEECCCC------------CCEEEEEETT
T ss_pred --------------EEEECCCcEEEEEecCCCce---eeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCC
Confidence 56677889999998765321 23568899999999999997 5799999999
Q ss_pred CcEEEEECcCCceeeeeecccccCcccceEEEEECCCC---CEEEEeeCCCeeeeecccccccccccccCccccccEEEe
Q 006825 478 CVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEP---TSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFA 554 (630)
Q Consensus 478 gtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg---~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwd 554 (630)
++|+|||+.++.....+. ..+.+|...|.+++|+|++ .+|++++.|++| ++|+
T Consensus 180 ~~v~lwd~~~~~~~~~~~-~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v-----------------------~iWd 235 (297)
T 2pm7_B 180 NLVKIWKYNSDAQTYVLE-STLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTC-----------------------IIWT 235 (297)
T ss_dssp SCEEEEEEETTTTEEEEE-EEECCCSSCEEEEEECCCCSSSEEEEEEETTSCE-----------------------EEEE
T ss_pred CcEEEEEEcCCCceEEEE-EEecCCCCceEEEEECCCCCCceEEEEEECCCcE-----------------------EEEE
Confidence 999999998766322111 1247999999999999994 899999999999 5666
Q ss_pred CCC-C--c-eEEe--ccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCC
Q 006825 555 LSD-K--P-ICSF--QGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLS 596 (630)
Q Consensus 555 lsg-k--~-l~tL--~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~ 596 (630)
+.. . . ...+ .+|...|.+++|+|+ .+|++++.|++|+||+..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 236 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp ESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred eCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 522 1 1 1233 578899999999999 999999999999999986
No 43
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.98 E-value=9.7e-31 Score=310.16 Aligned_cols=348 Identities=7% Similarity=-0.041 Sum_probs=241.4
Q ss_pred eeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEEEEe-------------------eecCCCceeEEEEc
Q 006825 261 MSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVN-------------------EIQEDGTWKKVKEV 321 (630)
Q Consensus 261 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~~v~-------------------e~~~dg~~~~l~dv 321 (630)
|.|+| |++| +++..++.++||++++|+.+... ....||. .++||+
T Consensus 64 l~fsp-g~~L--------------~S~s~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~-V~lwd~ 127 (902)
T 2oaj_A 64 MRFVK-GIYL--------------VVINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGS-MIVYDI 127 (902)
T ss_dssp EEEET-TTEE--------------EEEETTCEEEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSC-EEEEET
T ss_pred EEEcC-CCEE--------------EEEECcCeEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCc-EEEEEC
Confidence 79999 8888 55567789999999888754221 1123444 679999
Q ss_pred CCCceEeeec--c----eeeecCccceeEEEeec----ceEeecCCCccEecccCCCCceeEEecCCc------------
Q 006825 322 GTGRQLTIEE--F----EMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGMKSKKKGSW------------ 379 (630)
Q Consensus 322 ~TG~~lt~ee--f----~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~~~~lk~gH------------ 379 (630)
.+++...+.- + ..+.+|...|.+|+|+| .+++|+.|+++ +||+.+++.+.++. +|
T Consensus 128 ~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v--lWd~~~~~~~~~~~-~~~~~g~~~~~~~~ 204 (902)
T 2oaj_A 128 DRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL--TYSLVENEIKQSFI-YELPPFAPGGDFSE 204 (902)
T ss_dssp TTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE--EEETTTTEEEEEEC-CCBCTTCCCSTTCC
T ss_pred CCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE--EEECCCCceEEEEe-cccCCcCCCccccc
Confidence 9988652210 1 35689999999999998 68999999987 99999999998887 55
Q ss_pred ------cCCEEEEEEcCCCCeEEeecCCC-----C--Ccc------c---cC-------------CcceEEEeec----C
Q 006825 380 ------FKSIRTVASSVTGHKERRSSDER-----D--TSS------E---KG-------------GRRSSSATDD----S 420 (630)
Q Consensus 380 ------~~~V~sVAfSpdG~~lasgS~D~-----d--t~s------~---~g-------------h~~~Vsa~~~----s 420 (630)
...|.+|+|+|+|+++++++.|+ + ++. + .+ |...|.+++| .
T Consensus 205 ~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~ 284 (902)
T 2oaj_A 205 KTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENN 284 (902)
T ss_dssp CTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSS
T ss_pred ccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCC
Confidence 67899999999999999999987 1 111 1 11 2335666666 2
Q ss_pred CCe---EEEecC--------------------------------------------------------------------
Q 006825 421 QDV---SFHGQE-------------------------------------------------------------------- 429 (630)
Q Consensus 421 ~d~---l~Sgs~-------------------------------------------------------------------- 429 (630)
++. +++|+.
T Consensus 285 pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~ 364 (902)
T 2oaj_A 285 PEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNP 364 (902)
T ss_dssp TTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSC
T ss_pred CCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCc
Confidence 321 444433
Q ss_pred --------CcEEEEEeCCCCcccce------------------------------------eeeeEecccCcCEEEEEEc
Q 006825 430 --------RVRVRQYGKSCKDLTAL------------------------------------YKCQEIQAHNGSIWSIKFS 465 (630)
Q Consensus 430 --------Dg~VriWd~~~~el~~~------------------------------------~~v~tL~gHt~~V~sVaFS 465 (630)
|+.|++|++.++..... .....|.||...|..++|+
T Consensus 365 ~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~s 444 (902)
T 2oaj_A 365 GLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPA 444 (902)
T ss_dssp SEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCC
T ss_pred eeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCccccc
Confidence 34455555432210000 0011245566666667778
Q ss_pred cCCCEEEEEeCCCcEEEEECcCCceee-eeeccc-----ccCcccceEEEEECCCCCEEEEeeCCCeeeeeccccccccc
Q 006825 466 LDGRYLASAGEDCVIHVWQVVESERKG-ELLEKQ-----EDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRK 539 (630)
Q Consensus 466 pDG~~LASgS~DgtIrVWDl~tg~~~~-~l~~~~-----~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~ 539 (630)
|+|++||||+.|++||+||+.++.... ..+... ..+|...|.+++|+|++++||+++.|++|++|+........
T Consensus 445 pdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~ 524 (902)
T 2oaj_A 445 EYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYS 524 (902)
T ss_dssp SEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC--
T ss_pred ccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccC
Confidence 999999999999999999998874221 000000 12888999999999999999999999999999876532100
Q ss_pred ----------ccccCc--c-ccccEEEeC----------CCCceEEeccCCCCEEEEEEcCCCeEEEEECCCcEEEEeCC
Q 006825 540 ----------SLSLDH--M-VVPETVFAL----------SDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLS 596 (630)
Q Consensus 540 ----------s~s~d~--~-i~~~~Vwdl----------sgk~l~tL~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~ 596 (630)
...... . ..+.....+ ..+++.++.+|.+.|++|+|+|+++||+|+.|++|+|||+.
T Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG~lAsgs~D~tv~lwd~~ 604 (902)
T 2oaj_A 525 VENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIGFVGIAYAAGSLMLIDRR 604 (902)
T ss_dssp -------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTSEEEEEETTSEEEEEETT
T ss_pred ccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCcEEEEEeCCCcEEEEECC
Confidence 000000 0 000000010 01457889999999999999999999999999999999999
Q ss_pred CCcEEEE-----E--ecCCceEEEE-c-----CCC---cEEEEecce
Q 006825 597 SKTCLKI-----F--SHSDYDISLV-D-----RLM---LRFAYGAFL 627 (630)
Q Consensus 597 tg~~l~t-----~--~H~~~V~sVa-s-----~~~---~~lAsgs~~ 627 (630)
++..+.. + .|...|++|+ + +++ .++++++.+
T Consensus 605 ~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D 651 (902)
T 2oaj_A 605 GPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDM 651 (902)
T ss_dssp TTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETT
T ss_pred CCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecC
Confidence 8877652 2 3889999999 7 775 788888754
No 44
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.98 E-value=2.8e-31 Score=279.42 Aligned_cols=257 Identities=9% Similarity=0.032 Sum_probs=217.5
Q ss_pred ecCccceeEEEeec---ceEeecCCCccEecccCCC----CceeEEecCCccCCEEEEEEcCC-CCeEEeecCCC-----
Q 006825 336 VGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSG----GGMKSKKKGSWFKSIRTVASSVT-GHKERRSSDER----- 402 (630)
Q Consensus 336 ~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~t----G~~~~~lk~gH~~~V~sVAfSpd-G~~lasgS~D~----- 402 (630)
.+|...|.+++|+| .|++|+.|++++ +||+.+ .+.+.++. +|...|.+++|+|+ ++++++++.|+
T Consensus 64 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~-vw~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iw 141 (416)
T 2pm9_A 64 LQVDSKFNDLDWSHNNKIIAGALDNGSLE-LYSTNEANNAINSMARFS-NHSSSVKTVKFNAKQDNVLASGGNNGEIFIW 141 (416)
T ss_dssp CCCSSCEEEEEECSSSSCEEEEESSSCEE-EECCSSTTSCCCEEEECC-CSSSCCCEEEECSSSTTBEEEECSSSCEEBC
T ss_pred EecCCceEEEEECCCCCeEEEEccCCeEE-Eeecccccccccchhhcc-CCccceEEEEEcCCCCCEEEEEcCCCeEEEE
Confidence 46889999999998 799999999999 999988 34777777 99999999999998 89999999887
Q ss_pred C--Ccc-------------ccCCcceEEEeecCCCe---EEEecCCcEEEEEeCCCCcccceeeeeEeccc------CcC
Q 006825 403 D--TSS-------------EKGGRRSSSATDDSQDV---SFHGQERVRVRQYGKSCKDLTALYKCQEIQAH------NGS 458 (630)
Q Consensus 403 d--t~s-------------~~gh~~~Vsa~~~s~d~---l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gH------t~~ 458 (630)
+ +.. ..+|...|.++.+++++ +++++.|+.|++||+..++ .+..+..| ...
T Consensus 142 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-----~~~~~~~~~~~~~~~~~ 216 (416)
T 2pm9_A 142 DMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKK-----EVIHLSYTSPNSGIKQQ 216 (416)
T ss_dssp BTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTE-----EEEEECCCCCSSCCCCC
T ss_pred ECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCC-----cceEEeccccccccCCc
Confidence 1 111 25788899999999872 8999999999999998764 35556655 889
Q ss_pred EEEEEEccCC-CEEEEEeCCC---cEEEEECcCCc-eeeeeeccccc-CcccceEEEEECC-CCCEEEEeeCCCeeeeec
Q 006825 459 IWSIKFSLDG-RYLASAGEDC---VIHVWQVVESE-RKGELLEKQED-GHLNMLLLANGSP-EPTSLSPKHLDNHLEKKR 531 (630)
Q Consensus 459 V~sVaFSpDG-~~LASgS~Dg---tIrVWDl~tg~-~~~~l~~~~~~-gh~~~V~svafSp-dg~~lasgs~Dg~I~i~~ 531 (630)
|.+++|+|++ .+|++++.|+ +|++||+.++. .... +. +|...|.+++|+| ++.+|++++.|+.|
T Consensus 217 v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~-----~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v---- 287 (416)
T 2pm9_A 217 LSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQT-----LNQGHQKGILSLDWCHQDEHLLLSSGRDNTV---- 287 (416)
T ss_dssp EEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBC-----CCSCCSSCEEEEEECSSCSSCEEEEESSSEE----
T ss_pred eEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEE-----eecCccCceeEEEeCCCCCCeEEEEeCCCCE----
Confidence 9999999997 6999999999 99999999864 3443 35 8999999999999 89999999999999
Q ss_pred ccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC--CeEEEEECCCcEEEEeCCCCcEEEE-----
Q 006825 532 RGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKI----- 603 (630)
Q Consensus 532 ~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd--~~LaSgS~DgtVrIWDl~tg~~l~t----- 603 (630)
++|++ +++++.++.+|...|++++|+|+ .+|++++.|++|+|||+.++.....
T Consensus 288 -------------------~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~ 348 (416)
T 2pm9_A 288 -------------------LLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETE 348 (416)
T ss_dssp -------------------EEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----
T ss_pred -------------------EEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCccccccc
Confidence 88887 78899999999999999999998 6999999999999999987653211
Q ss_pred ----------E--------------------e-cCCceEEEE-cCCCcEEEEecce
Q 006825 604 ----------F--------------------S-HSDYDISLV-DRLMLRFAYGAFL 627 (630)
Q Consensus 604 ----------~--------------------~-H~~~V~sVa-s~~~~~lAsgs~~ 627 (630)
+ . |...|++++ ++++.++++++.+
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d 404 (416)
T 2pm9_A 349 TKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDG 404 (416)
T ss_dssp ------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTS
T ss_pred ccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCC
Confidence 1 1 466777778 8999999988754
No 45
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.98 E-value=6e-30 Score=262.79 Aligned_cols=260 Identities=16% Similarity=0.067 Sum_probs=211.9
Q ss_pred eEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCC
Q 006825 316 KKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTG 392 (630)
Q Consensus 316 ~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG 392 (630)
.++|++.+++.+ .++.+|...|.+++|+| .|++++.|++++ +||+.+++.+..+. |...|.+++|+|+|
T Consensus 56 i~vwd~~~~~~~-----~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~-iwd~~~~~~~~~~~--~~~~v~~~~~~~~~ 127 (369)
T 3zwl_B 56 ASVWYSLNGERL-----GTLDGHTGTIWSIDVDCFTKYCVTGSADYSIK-LWDVSNGQCVATWK--SPVPVKRVEFSPCG 127 (369)
T ss_dssp EEEEETTTCCEE-----EEECCCSSCEEEEEECTTSSEEEEEETTTEEE-EEETTTCCEEEEEE--CSSCEEEEEECTTS
T ss_pred EEEEeCCCchhh-----hhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEE-EEECCCCcEEEEee--cCCCeEEEEEccCC
Confidence 446666666666 67789999999999998 799999999999 99999999998887 88899999999999
Q ss_pred CeEEeecCC-----C-----C-----------------CccccCCcc--eEEEeecCCCe--EEEecCCcEEEEEeCCCC
Q 006825 393 HKERRSSDE-----R-----D-----------------TSSEKGGRR--SSSATDDSQDV--SFHGQERVRVRQYGKSCK 441 (630)
Q Consensus 393 ~~lasgS~D-----~-----d-----------------t~s~~gh~~--~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~ 441 (630)
+++++++.+ + + ......|.. .+.++.+++++ +++++.|+.|++||+...
T Consensus 128 ~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 207 (369)
T 3zwl_B 128 NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNN 207 (369)
T ss_dssp SEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTT
T ss_pred CEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCC
Confidence 999998877 3 0 011334444 88899998887 899999999999999763
Q ss_pred cccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEe
Q 006825 442 DLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPK 521 (630)
Q Consensus 442 el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasg 521 (630)
. ..+..+.+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+ .+...+..++|+|++.+++++
T Consensus 208 ~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~ 277 (369)
T 3zwl_B 208 Y----EYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKY------ETDCPLNTAVITPLKEFIILG 277 (369)
T ss_dssp T----EEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE------ECSSCEEEEEECSSSSEEEEE
T ss_pred c----EeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeee------cCCCCceeEEecCCCceEEEe
Confidence 1 256788999999999999999999999999999999999998887774 266789999999999999999
Q ss_pred eCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCc
Q 006825 522 HLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKT 599 (630)
Q Consensus 522 s~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~ 599 (630)
+.++.+.++....... ...+ .+|+. +++++..+.+|...|++++|+|+ ++|++++.|++|+||++..+.
T Consensus 278 ~~~~~~~~~~~~~~~~------~~~i---~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 278 GGQEAKDVTTTSANEG------KFEA---RFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp ECCC-------------------CEE---EEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred ecCCCceEEEEecCCC------ccee---EEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence 9888654433221100 0011 88998 78999999999999999999999 999999999999999998765
Q ss_pred EEE
Q 006825 600 CLK 602 (630)
Q Consensus 600 ~l~ 602 (630)
...
T Consensus 349 ~~~ 351 (369)
T 3zwl_B 349 FDF 351 (369)
T ss_dssp HTC
T ss_pred chh
Confidence 433
No 46
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.98 E-value=2.8e-30 Score=295.09 Aligned_cols=278 Identities=18% Similarity=0.174 Sum_probs=208.1
Q ss_pred CCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEe
Q 006825 299 DNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKK 375 (630)
Q Consensus 299 ddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~l 375 (630)
++++.++... .||. .++|++.++..........+.||...|.+++|+| .|++|+.|++|+ +||+.++..++++
T Consensus 393 ~~~~~l~s~s--~D~~-i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~-vwd~~~~~~~~~~ 468 (694)
T 3dm0_A 393 DNADIIVSAS--RDKS-IILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELR-LWDLAAGVSTRRF 468 (694)
T ss_dssp TCCSEEEEEE--TTSE-EEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE-EEETTTTEEEEEE
T ss_pred CCCCEEEEEe--CCCc-EEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEE-EEECCCCcceeEE
Confidence 4444444433 3554 6788887654332223367899999999999998 799999999999 9999999999999
Q ss_pred cCCccCCEEEEEEcCCCCeEEeecCCC-----CCc---------cccCCcceEEEeecCCCe----EEEecCCcEEEEEe
Q 006825 376 KGSWFKSIRTVASSVTGHKERRSSDER-----DTS---------SEKGGRRSSSATDDSQDV----SFHGQERVRVRQYG 437 (630)
Q Consensus 376 k~gH~~~V~sVAfSpdG~~lasgS~D~-----dt~---------s~~gh~~~Vsa~~~s~d~----l~Sgs~Dg~VriWd 437 (630)
. +|...|.+|+|+|+|+++++++.|+ +.. ...+|...|.++.++++. +++++.|++|++||
T Consensus 469 ~-~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd 547 (694)
T 3dm0_A 469 V-GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWN 547 (694)
T ss_dssp E-CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEE
T ss_pred e-CCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEE
Confidence 8 9999999999999999999999997 211 135788999999998864 89999999999999
Q ss_pred CCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCE
Q 006825 438 KSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTS 517 (630)
Q Consensus 438 ~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~ 517 (630)
+...+ +..++.+|.+.|++|+|+|+|++|+||+.|++|+|||+.+++.+..+ .+...|.+++|+|++.+
T Consensus 548 ~~~~~-----~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~------~~~~~v~~~~~sp~~~~ 616 (694)
T 3dm0_A 548 LSNCK-----LRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSL------EANSVIHALCFSPNRYW 616 (694)
T ss_dssp TTTCC-----EEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECC------BCSSCEEEEEECSSSSE
T ss_pred CCCCc-----EEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEe------cCCCcEEEEEEcCCCcE
Confidence 97664 46789999999999999999999999999999999999999877663 23467999999999988
Q ss_pred EEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCC
Q 006825 518 LSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLS 596 (630)
Q Consensus 518 lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~ 596 (630)
++++. ++.|++|+.........+..+.... ..............|.-.|++++|+|+ .+|++|+.||+|+||++.
T Consensus 617 l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 617 LCAAT-EHGIKIWDLESKSIVEDLKVDLKAE---AEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEEEE-TTEEEEEETTTTEEEEEECCCCC-------------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEEEc-CCCEEEEECCCCCChhhhccccccc---cccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 87764 5568555543322111111100000 000000000001122335889999999 999999999999999985
No 47
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.98 E-value=9.2e-30 Score=274.07 Aligned_cols=260 Identities=16% Similarity=0.115 Sum_probs=225.5
Q ss_pred CCceeEEEEcCCCceEeeecceeeecCccceeEEEeec--ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEc
Q 006825 312 DGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ--NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASS 389 (630)
Q Consensus 312 dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~--~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfS 389 (630)
||. .++|++.+++.+ ..+.||...|.+++|.| .+++|+.|++++ +||+.+++.+.++. +|...|.+++|+
T Consensus 141 dg~-i~vwd~~~~~~~-----~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~-vwd~~~~~~~~~~~-~h~~~v~~l~~~ 212 (464)
T 3v7d_B 141 DKM-IRVYDSINKKFL-----LQLSGHDGGVWALKYAHGGILVSGSTDRTVR-VWDIKKGCCTHVFE-GHNSTVRCLDIV 212 (464)
T ss_dssp TSC-EEEEETTTTEEE-----EEECCCSSCEEEEEECSTTEEEEEETTSCEE-EEETTTTEEEEEEC-CCSSCEEEEEEE
T ss_pred CCc-EEEEECCCCcEE-----EEEeCCCcCEEEEEEcCCCEEEEEeCCCCEE-EEECCCCcEEEEEC-CCCCccEEEEEe
Confidence 443 567777788777 77889999999999998 799999999999 99999999999998 999999999999
Q ss_pred --CCCCeEEeecCCC-----C-----------------------------CccccCCcceEEEeecCCCeEEEecCCcEE
Q 006825 390 --VTGHKERRSSDER-----D-----------------------------TSSEKGGRRSSSATDDSQDVSFHGQERVRV 433 (630)
Q Consensus 390 --pdG~~lasgS~D~-----d-----------------------------t~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~V 433 (630)
++++++++++.|+ + .....+|...|.++......+++++.|++|
T Consensus 213 ~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i 292 (464)
T 3v7d_B 213 EYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTL 292 (464)
T ss_dssp ESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCE
T ss_pred cCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeE
Confidence 5889999999887 1 112567888888888777779999999999
Q ss_pred EEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECC
Q 006825 434 RQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSP 513 (630)
Q Consensus 434 riWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSp 513 (630)
++||+.+.+ ++..+.+|...|++++|+|++++|++|+.|++|++||+.+++.+..+ .+|...|.+++++
T Consensus 293 ~vwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~-----~~h~~~v~~~~~~- 361 (464)
T 3v7d_B 293 IVWDVAQMK-----CLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL-----QGHTALVGLLRLS- 361 (464)
T ss_dssp EEEETTTTE-----EEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEE-----CCCSSCEEEEEEC-
T ss_pred EEEECCCCc-----EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE-----eCCCCcEEEEEEc-
Confidence 999997664 57788999999999999999999999999999999999999888774 7899999999997
Q ss_pred CCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEE
Q 006825 514 EPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVR 591 (630)
Q Consensus 514 dg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVr 591 (630)
+.++++++.|+.| ++|++ +++....+ .|...+..++|+|+ .+|++|+ |++|+
T Consensus 362 -~~~l~s~s~dg~v-----------------------~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~-dg~i~ 415 (464)
T 3v7d_B 362 -DKFLVSAAADGSI-----------------------RGWDANDYSRKFSY-HHTNLSAITTFYVSDNILVSGS-ENQFN 415 (464)
T ss_dssp -SSEEEEEETTSEE-----------------------EEEETTTCCEEEEE-ECTTCCCEEEEEECSSEEEEEE-TTEEE
T ss_pred -CCEEEEEeCCCcE-----------------------EEEECCCCceeeee-cCCCCccEEEEEeCCCEEEEec-CCeEE
Confidence 5899999999999 77777 34444443 37777888999999 8888888 99999
Q ss_pred EEeCCCCcEEEEEe--cCCceEEEE-cC
Q 006825 592 LWHLSSKTCLKIFS--HSDYDISLV-DR 616 (630)
Q Consensus 592 IWDl~tg~~l~t~~--H~~~V~sVa-s~ 616 (630)
|||+.++++++.+. |...|++|+ +.
T Consensus 416 iwd~~~g~~~~~~~~~~~~~v~~v~~~~ 443 (464)
T 3v7d_B 416 IYNLRSGKLVHANILKDADQIWSVNFKG 443 (464)
T ss_dssp EEETTTCCEEESCTTTTCSEEEEEEEET
T ss_pred EEECCCCcEEehhhccCCCcEEEEEecC
Confidence 99999999998743 999999999 53
No 48
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.98 E-value=2.6e-30 Score=270.83 Aligned_cols=265 Identities=12% Similarity=0.007 Sum_probs=227.2
Q ss_pred ceeeecCccceeEEEeec-ceEeecCCCccEecccCCCCc------eeEEecCCccCCEEEEEEcCC----C---CeEEe
Q 006825 332 FEMCVGHSPIVQELMRRQ-NVEEGNKDSFDLNNNGSSGGG------MKSKKKGSWFKSIRTVASSVT----G---HKERR 397 (630)
Q Consensus 332 f~~l~GHs~~V~~Lafs~-~laSgS~D~tvr~vWD~~tG~------~~~~lk~gH~~~V~sVAfSpd----G---~~las 397 (630)
...+.||...|.+|+|.| .|++|+.|++++ +||+.+++ .+..+. +|...|.+++|+|+ | +++++
T Consensus 9 ~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~-iw~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~g~~~~~l~s 86 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACNSFTVSCSGDGYLK-VWDNKLLDNENPKDKSYSHF-VHKSGLHHVDVLQAIERDAFELCLVAT 86 (397)
T ss_dssp EEESSCSSSCEEEEEECSSEEEEEETTSEEE-EEESBCCTTCCGGGGEEEEE-CCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred hhhhhhhhcCeEEEEecCCeEEEEcCCCEEE-EEECCCcccccCCCcceEEe-cCCCcEEEEEEecccccCCccccEEEE
Confidence 366789999999999999 899999999999 99999998 788888 99999999999999 9 99999
Q ss_pred ecCCC----------C------CccccCC-----cceEEEeecC----CCe---EEEecCCcEEEEEeCCC------Ccc
Q 006825 398 SSDER----------D------TSSEKGG-----RRSSSATDDS----QDV---SFHGQERVRVRQYGKSC------KDL 443 (630)
Q Consensus 398 gS~D~----------d------t~s~~gh-----~~~Vsa~~~s----~d~---l~Sgs~Dg~VriWd~~~------~el 443 (630)
++.|+ . .....+| ...|.++.+. +++ +++++.|+.|++||+.. .+.
T Consensus 87 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 166 (397)
T 1sq9_A 87 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT 166 (397)
T ss_dssp EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT
T ss_pred EcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccce
Confidence 99887 1 2335667 5889999988 554 78999999999999876 433
Q ss_pred cceeeeeEe-------cccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccC---c---ccceEEEE
Q 006825 444 TALYKCQEI-------QAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG---H---LNMLLLAN 510 (630)
Q Consensus 444 ~~~~~v~tL-------~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~g---h---~~~V~sva 510 (630)
........+ ..|...|.+++|+|++ +|++++.|+.|++||+.+++.+..+ .. | ...|.+++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~-----~~~~~h~~~~~~i~~i~ 240 (397)
T 1sq9_A 167 LNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNF-----ESQHSMINNSNSIRSVK 240 (397)
T ss_dssp TCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEE-----ECCC---CCCCCEEEEE
T ss_pred eeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEE-----eccccccccCCccceEE
Confidence 222222256 4599999999999999 9999999999999999998877774 45 8 89999999
Q ss_pred ECCCCCEEEEeeCC---CeeeeecccccccccccccCccccccEEEeC-CCCceEEecc-------------CCCCEEEE
Q 006825 511 GSPEPTSLSPKHLD---NHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQG-------------HLDDVLDL 573 (630)
Q Consensus 511 fSpdg~~lasgs~D---g~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~G-------------Hs~~V~sL 573 (630)
|+|++.+|++++.| +.| ++|++ +++++..+.+ |...|.++
T Consensus 241 ~~~~~~~l~~~~~d~~~g~i-----------------------~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 297 (397)
T 1sq9_A 241 FSPQGSLLAIAHDSNSFGCI-----------------------TLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSL 297 (397)
T ss_dssp ECSSTTEEEEEEEETTEEEE-----------------------EEEETTTCCEEEEECBC--------CCBSBSSCEEEE
T ss_pred ECCCCCEEEEEecCCCCceE-----------------------EEEECCCCcccceeccCcccccccccccccCCcEEEE
Confidence 99999999999999 888 78887 7788889988 99999999
Q ss_pred EEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-------c---------------CCceEEEE-cCCC----------c
Q 006825 574 SWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-------H---------------SDYDISLV-DRLM----------L 619 (630)
Q Consensus 574 afSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-------H---------------~~~V~sVa-s~~~----------~ 619 (630)
+|+|+ .+|++++.|++|+|||+.+++++.++. | ...|++++ .+++ .
T Consensus 298 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~ 377 (397)
T 1sq9_A 298 SFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNE 377 (397)
T ss_dssp EECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSC
T ss_pred EECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccc
Confidence 99999 999999999999999999999999987 5 89999999 7776 5
Q ss_pred EEEEecce
Q 006825 620 RFAYGAFL 627 (630)
Q Consensus 620 ~lAsgs~~ 627 (630)
.+++++.+
T Consensus 378 ~l~s~~~d 385 (397)
T 1sq9_A 378 SLCCVCLD 385 (397)
T ss_dssp EEEEEETT
T ss_pred eEEEecCC
Confidence 77777643
No 49
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.98 E-value=1.8e-29 Score=271.51 Aligned_cols=266 Identities=20% Similarity=0.247 Sum_probs=234.6
Q ss_pred eEEEEcCCCceEeeecceeeecCccceeEEEeec-ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCe
Q 006825 316 KKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ-NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHK 394 (630)
Q Consensus 316 ~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~-~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~ 394 (630)
.++|+..+|+.+ ..+.||...|.+++|.+ .+++|+.|++++ +||+.+++.+.++. +|...|.+++|+ +++
T Consensus 141 i~vwd~~~~~~~-----~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~-vwd~~~~~~~~~~~-~h~~~v~~~~~~--~~~ 211 (445)
T 2ovr_B 141 LKVWSAVTGKCL-----RTLVGHTGGVWSSQMRDNIIISGSTDRTLK-VWNAETGECIHTLY-GHTSTVRCMHLH--EKR 211 (445)
T ss_dssp EEEEETTTCCEE-----EECCCCSSCEEEEEEETTEEEEEETTSCEE-EEETTTTEEEEEEC-CCSSCEEEEEEE--TTE
T ss_pred EEEEECCCCcEE-----EEEcCCCCCEEEEEecCCEEEEEeCCCeEE-EEECCcCcEEEEEC-CCCCcEEEEEec--CCE
Confidence 457777777776 77889999999999998 899999999999 99999999999998 999999999995 578
Q ss_pred EEeecCCC-----C--C----ccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEE
Q 006825 395 ERRSSDER-----D--T----SSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIK 463 (630)
Q Consensus 395 lasgS~D~-----d--t----~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVa 463 (630)
+++++.|+ + + ....+|...|.++.+....+++++.|+.|++||..+++ ++.++.+|...|.+++
T Consensus 212 l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~v~~~~ 286 (445)
T 2ovr_B 212 VVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETET-----CLHTLQGHTNRVYSLQ 286 (445)
T ss_dssp EEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTE-----EEEEECCCSSCEEEEE
T ss_pred EEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCCCc-----EeEEecCCCCceEEEE
Confidence 99999887 2 1 22678999999999976679999999999999987654 5778899999999999
Q ss_pred EccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccccccccccccc
Q 006825 464 FSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSL 543 (630)
Q Consensus 464 FSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~ 543 (630)
| ++++|++|+.|++|++||+.+++.+..+ .+|...+.++.+ ++.++++++.|+.|
T Consensus 287 ~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~-----~~~~~~v~~~~~--~~~~l~~~~~dg~i---------------- 341 (445)
T 2ovr_B 287 F--DGIHVVSGSLDTSIRVWDVETGNCIHTL-----TGHQSLTSGMEL--KDNILVSGNADSTV---------------- 341 (445)
T ss_dssp E--CSSEEEEEETTSCEEEEETTTCCEEEEE-----CCCCSCEEEEEE--ETTEEEEEETTSCE----------------
T ss_pred E--CCCEEEEEeCCCeEEEEECCCCCEEEEE-----cCCcccEEEEEE--eCCEEEEEeCCCeE----------------
Confidence 9 8999999999999999999999888774 788888888877 46799999999999
Q ss_pred CccccccEEEeC-CCCceEEecc---CCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEE------ecCCceEEE
Q 006825 544 DHMVVPETVFAL-SDKPICSFQG---HLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIF------SHSDYDISL 613 (630)
Q Consensus 544 d~~i~~~~Vwdl-sgk~l~tL~G---Hs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~l~t~------~H~~~V~sV 613 (630)
++|++ +++++.++.+ |...|++++|++ .+|++|+.||+|+|||+.+++++..+ .|...|+++
T Consensus 342 -------~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~ 413 (445)
T 2ovr_B 342 -------KIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK-NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRI 413 (445)
T ss_dssp -------EEEETTTCCEEEEECSTTSCSSCEEEEEECS-SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEE
T ss_pred -------EEEECCCCcEEEEEccCCCCCCCEEEEEECC-CEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEE
Confidence 88888 7888889887 889999999975 79999999999999999999999988 388999999
Q ss_pred E-cCCCcEEEEeccee
Q 006825 614 V-DRLMLRFAYGAFLN 628 (630)
Q Consensus 614 a-s~~~~~lAsgs~~n 628 (630)
+ ++++..+++++.+.
T Consensus 414 ~~s~~~~~la~~~~dg 429 (445)
T 2ovr_B 414 RASNTKLVCAVGSRNG 429 (445)
T ss_dssp EECSSEEEEEEECSSS
T ss_pred EecCCEEEEEEcccCC
Confidence 9 99999999987553
No 50
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.98 E-value=4.3e-31 Score=275.82 Aligned_cols=288 Identities=16% Similarity=0.055 Sum_probs=207.3
Q ss_pred ceeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCc
Q 006825 260 SMSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHS 339 (630)
Q Consensus 260 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs 339 (630)
.++++|||++| +++..++.++||+++++.. +.+ .++.+|.
T Consensus 16 ~~~~s~~g~~l--------------~~~~~d~~i~iw~~~~~~~---------------------~~~-----~~~~~h~ 55 (377)
T 3dwl_C 16 EHAFNSQRTEF--------------VTTTATNQVELYEQDGNGW---------------------KHA-----RTFSDHD 55 (377)
T ss_dssp CCEECSSSSEE--------------ECCCSSSCBCEEEEETTEE---------------------EEC-----CCBCCCS
T ss_pred EEEECCCCCEE--------------EEecCCCEEEEEEccCCce---------------------EEE-----EEEecCC
Confidence 47999999999 3344455666666643310 222 6678999
Q ss_pred cceeEEEeec---ceEeecCCCccEecccCCCCc---eeEEecCCccCCEEEEEEcCCCCeEEeecCCC-----C-----
Q 006825 340 PIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGG---MKSKKKGSWFKSIRTVASSVTGHKERRSSDER-----D----- 403 (630)
Q Consensus 340 ~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~---~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-----d----- 403 (630)
..|.+++|+| .|++++.|++++ +||+.+++ ....+. +|...|.+++|+|+|+++++++.|+ +
T Consensus 56 ~~v~~~~~s~~~~~l~s~s~d~~v~-vwd~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 133 (377)
T 3dwl_C 56 KIVTCVDWAPKSNRIVTCSQDRNAY-VYEKRPDGTWKQTLVLL-RLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEN 133 (377)
T ss_dssp SCEEEEEECTTTCCEEEEETTSSEE-EC------CCCCEEECC-CCSSCEEEEECCTTSSCCEEEESSSCEEECCC----
T ss_pred ceEEEEEEeCCCCEEEEEeCCCeEE-EEEcCCCCceeeeeEec-ccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcc
Confidence 9999999998 799999999999 99999987 666777 8999999999999999999999887 1
Q ss_pred ----CccccC-CcceEEEeecCCCe--EEEecCCcEEEEEeCCCCccc-------------ceeeeeEecccCcCEEEEE
Q 006825 404 ----TSSEKG-GRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLT-------------ALYKCQEIQAHNGSIWSIK 463 (630)
Q Consensus 404 ----t~s~~g-h~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~-------------~~~~v~tL~gHt~~V~sVa 463 (630)
...+.+ |...|.++++++++ +++++.|++|++||+...++. ...++..+ +|...|++++
T Consensus 134 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~ 212 (377)
T 3dwl_C 134 DWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVG 212 (377)
T ss_dssp -CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEE
T ss_pred cceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEE
Confidence 122455 99999999999987 899999999999998643211 12345666 9999999999
Q ss_pred EccCCCEEEEEeCCCcEEEEECcCCce----eeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccccccc-c
Q 006825 464 FSLDGRYLASAGEDCVIHVWQVVESER----KGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSIN-R 538 (630)
Q Consensus 464 FSpDG~~LASgS~DgtIrVWDl~tg~~----~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~-~ 538 (630)
|+|+|++|++++.|++|+|||+.+++. +.. +.+|...|.+++|+|++++|++++.++.+.+|....... .
T Consensus 213 ~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~ 287 (377)
T 3dwl_C 213 FSPSGNALAYAGHDSSVTIAYPSAPEQPPRALIT-----VKLSQLPLRSLLWANESAIVAAGYNYSPILLQGNESGWAHT 287 (377)
T ss_dssp ECTTSSCEEEEETTTEEC-CEECSTTSCEEECCC-----EECSSSCEEEEEEEETTEEEEEESSSSEEEECCCC---CCS
T ss_pred ECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEe-----ecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeCCCceEEE
Confidence 999999999999999999999999887 444 478999999999999999999998887774444322111 1
Q ss_pred cccccCcc----------------ccc-------cEEEe--CCC---CceEEeccCCCCEEEEEEcCC--C---eEEEEE
Q 006825 539 KSLSLDHM----------------VVP-------ETVFA--LSD---KPICSFQGHLDDVLDLSWSKS--Q---HLLSSS 585 (630)
Q Consensus 539 ~s~s~d~~----------------i~~-------~~Vwd--lsg---k~l~tL~GHs~~V~sLafSPd--~---~LaSgS 585 (630)
..+..... ... ..+.. ..+ .......+|...|++|++.+. . +|+||+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g 367 (377)
T 3dwl_C 288 RDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSG 367 (377)
T ss_dssp BCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred eeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeec
Confidence 11100000 000 00111 111 111123459999999998765 3 699999
Q ss_pred CCCcEEEEeC
Q 006825 586 MDKTVRLWHL 595 (630)
Q Consensus 586 ~DgtVrIWDl 595 (630)
.||+|+|||+
T Consensus 368 ~Dg~i~iWdl 377 (377)
T 3dwl_C 368 TDGRVVLWTL 377 (377)
T ss_dssp TTSEEEEECC
T ss_pred CCCcEEEecC
Confidence 9999999986
No 51
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.98 E-value=1.4e-29 Score=279.69 Aligned_cols=331 Identities=13% Similarity=0.079 Sum_probs=254.2
Q ss_pred ceeecC--CCCcccCCCccccccCCCCCcccccccEEEEECCCC------cEEEEeee------------cCCCc-----
Q 006825 260 SMSING--NGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNG------KEFVVNEI------------QEDGT----- 314 (630)
Q Consensus 260 ~~~~s~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG------~~~~v~e~------------~~dg~----- 314 (630)
.|.++| ||++| +++..++.++||++++| ....+... ..+|.
T Consensus 69 ~~~~sp~~~~~~l--------------~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 134 (615)
T 1pgu_A 69 TVKFSPIKGSQYL--------------CSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVV 134 (615)
T ss_dssp EEEECSSTTCCEE--------------EEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred EEEECcCCCCCEE--------------EEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEe
Confidence 389999 99999 55566778999998755 22221111 11111
Q ss_pred ------eeEEEEcCCCceEeeecceeeecCccceeEEEeec----ceEeecCCCccEecccCCCCceeEEecCCccC---
Q 006825 315 ------WKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFK--- 381 (630)
Q Consensus 315 ------~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~--- 381 (630)
...++-..+++.+ ..+.+|...|.+++|+| .+++++.|++++ +||..+++.+.++. +|..
T Consensus 135 ~~~~~~~~~v~~~d~~~~~-----~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~-vwd~~~~~~~~~~~-~~~~~~~ 207 (615)
T 1pgu_A 135 GEGRDNFGVFISWDSGNSL-----GEVSGHSQRINACHLKQSRPMRSMTVGDDGSVV-FYQGPPFKFSASDR-THHKQGS 207 (615)
T ss_dssp ECCSSCSEEEEETTTCCEE-----EECCSCSSCEEEEEECSSSSCEEEEEETTTEEE-EEETTTBEEEEEEC-SSSCTTC
T ss_pred ccCCCCccEEEEEECCCcc-----eeeecCCccEEEEEECCCCCcEEEEEeCCCcEE-EEeCCCcceeeeec-ccCCCCc
Confidence 0123333356655 78889999999999999 599999999999 99999999999998 8999
Q ss_pred CEEEEEEcCC-CCeEEeecCCC-----C--Ccc----c-c---CCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcc
Q 006825 382 SIRTVASSVT-GHKERRSSDER-----D--TSS----E-K---GGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDL 443 (630)
Q Consensus 382 ~V~sVAfSpd-G~~lasgS~D~-----d--t~s----~-~---gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el 443 (630)
.|.+++|+|+ |+++++++.|+ + +.. . . +|...|.++.++ ++ +++++.|+.|++||..+++
T Consensus 208 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~- 285 (615)
T 1pgu_A 208 FVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSK- 285 (615)
T ss_dssp CEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTE-
T ss_pred eEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCc-
Confidence 9999999999 99999999887 1 111 3 4 899999999997 65 8999999999999998664
Q ss_pred cceeeeeEeccc----CcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCccc---------------
Q 006825 444 TALYKCQEIQAH----NGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLN--------------- 504 (630)
Q Consensus 444 ~~~~~v~tL~gH----t~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~--------------- 504 (630)
++..+..| ...+.++.|. ++++|++++.|+.|++||+.+++.+..+ .+|..
T Consensus 286 ----~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~-----~~~~~~v~~~~~~~l~~~~~ 355 (615)
T 1pgu_A 286 ----CVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTI-----SGHNKGITALTVNPLISGSY 355 (615)
T ss_dssp ----EEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEE-----CCCSSCEEEEETTTTEEEET
T ss_pred ----EEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEE-----eCCCCCEEEEEecCcEEECC
Confidence 35566666 5788999996 9999999999999999999987766654 44444
Q ss_pred ------------------ceEEEEECCCCCEEEEeeCCCeeeeeccccccc-----------------------------
Q 006825 505 ------------------MLLLANGSPEPTSLSPKHLDNHLEKKRRGRSIN----------------------------- 537 (630)
Q Consensus 505 ------------------~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~----------------------------- 537 (630)
.|.+++| +++..+++++.|+.+++|+......
T Consensus 356 dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 434 (615)
T 1pgu_A 356 DGRIMEWSSSSMHQDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQS 434 (615)
T ss_dssp TSCEEETTTTEEECCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEET
T ss_pred CCeEEEEEchhhcCcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEec
Confidence 4455555 3366667777777777776543110
Q ss_pred ------------------------cccccc-CccccccEEEeCCCCce--EEeccCCCCEEEEEEcCC-CeEEEEECCCc
Q 006825 538 ------------------------RKSLSL-DHMVVPETVFALSDKPI--CSFQGHLDDVLDLSWSKS-QHLLSSSMDKT 589 (630)
Q Consensus 538 ------------------------~~s~s~-d~~i~~~~Vwdlsgk~l--~tL~GHs~~V~sLafSPd-~~LaSgS~Dgt 589 (630)
...... ++.+ ++|++....+ ..+.+|...|++++|+|+ .+|++++.|++
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i---~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~ 511 (615)
T 1pgu_A 435 FTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTI---QVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGK 511 (615)
T ss_dssp TTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCE---EEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred cCCceeeecccCCCceEEEEcCCEEEEeecCCCeE---EEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCe
Confidence 000111 3334 7788754433 677899999999999999 99999999999
Q ss_pred EEEEeCCCCcEEEEEe--cCCceEEEE-cC----------CCcEEEEecce
Q 006825 590 VRLWHLSSKTCLKIFS--HSDYDISLV-DR----------LMLRFAYGAFL 627 (630)
Q Consensus 590 VrIWDl~tg~~l~t~~--H~~~V~sVa-s~----------~~~~lAsgs~~ 627 (630)
|+|||+.+++++..+. |...|++++ +| ++..+++++.+
T Consensus 512 i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~d 562 (615)
T 1pgu_A 512 ILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLD 562 (615)
T ss_dssp EEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETT
T ss_pred EEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCC
Confidence 9999999999999887 999999999 88 89999998654
No 52
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.97 E-value=2.8e-31 Score=274.72 Aligned_cols=240 Identities=16% Similarity=0.161 Sum_probs=193.7
Q ss_pred eeecCccceeEEEeec---ceEeecCCCccEecccCCCCc--eeEEecCCccCCEEEEEEcC--CCCeEEeecCCC----
Q 006825 334 MCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGG--MKSKKKGSWFKSIRTVASSV--TGHKERRSSDER---- 402 (630)
Q Consensus 334 ~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~--~~~~lk~gH~~~V~sVAfSp--dG~~lasgS~D~---- 402 (630)
.+.||...|++++|+| .||+|+.|++++ +||+.++. .+.+++ +|...|.+|+|++ +|++|++++.|+
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~-lwd~~~~~~~~~~~l~-gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~i 85 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVK-IFDVRNGGQILIADLR-GHEGPVWQVAWAHPMYGNILASCSYDRKVII 85 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEE-EEEEETTEEEEEEEEE-CCSSCEEEEEECCGGGSSCEEEEETTSCEEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEE-EEEecCCCcEEEEEEc-CCCccEEEEEeCCCCCCCEEEEEECCCEEEE
Confidence 4579999999999998 799999999999 99998875 467788 9999999999986 489999999987
Q ss_pred -C--Cc------cccCCcceEEEeecCCC--e--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccC--
Q 006825 403 -D--TS------SEKGGRRSSSATDDSQD--V--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLD-- 467 (630)
Q Consensus 403 -d--t~------s~~gh~~~Vsa~~~s~d--~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpD-- 467 (630)
+ +. .+.+|...|.+++|+++ + +++|+.|++|++|+...... ......+.+|...|.+++|+|+
T Consensus 86 Wd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~ 163 (316)
T 3bg1_A 86 WREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ--WEVKKINNAHTIGCNAVSWAPAVV 163 (316)
T ss_dssp ECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC--EEECCBTTSSSSCBCCCEECCCCC
T ss_pred EECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC--cceeeeeccccCCcceEEEccccC
Confidence 2 21 25679999999999986 4 89999999999999876421 1224567899999999999997
Q ss_pred ---------------CCEEEEEeCCCcEEEEECcCCc---eeeeeecccccCcccceEEEEECCCC----CEEEEeeCCC
Q 006825 468 ---------------GRYLASAGEDCVIHVWQVVESE---RKGELLEKQEDGHLNMLLLANGSPEP----TSLSPKHLDN 525 (630)
Q Consensus 468 ---------------G~~LASgS~DgtIrVWDl~tg~---~~~~l~~~~~~gh~~~V~svafSpdg----~~lasgs~Dg 525 (630)
+++|++|+.|++|+|||+.... .... +.+|...|.+++|+|++ .+|++++.|+
T Consensus 164 ~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~-----l~~h~~~V~~v~~sp~~~~~~~~las~s~D~ 238 (316)
T 3bg1_A 164 PGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQK-----LEAHSDWVRDVAWAPSIGLPTSTIASCSQDG 238 (316)
T ss_dssp C------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEEC-----CBCCSSCEEEEECCCCSSCSCCEEEEEETTC
T ss_pred CccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeee-----cccCCCceEEEEecCCCCCCCceEEEEcCCC
Confidence 4799999999999999997542 3333 47899999999999986 8999999999
Q ss_pred eeeeecccccccccccccCccccccEEEeCCC-----CceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCC-C
Q 006825 526 HLEKKRRGRSINRKSLSLDHMVVPETVFALSD-----KPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSS-K 598 (630)
Q Consensus 526 ~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsg-----k~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~t-g 598 (630)
+| ++|++.. .....+.+|...|++++|+|+ .+|++++.|++|+||+... +
T Consensus 239 ~v-----------------------~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~~g 295 (316)
T 3bg1_A 239 RV-----------------------FIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDG 295 (316)
T ss_dssp EE-----------------------EEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECTTS
T ss_pred eE-----------------------EEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECCCC
Confidence 99 5666522 123456779999999999999 9999999999999999763 3
Q ss_pred --cEEEEEe
Q 006825 599 --TCLKIFS 605 (630)
Q Consensus 599 --~~l~t~~ 605 (630)
.|+..+.
T Consensus 296 ~~~~~~~~~ 304 (316)
T 3bg1_A 296 QWVCISDVN 304 (316)
T ss_dssp CEEEEEECC
T ss_pred cEEEeeecc
Confidence 4555554
No 53
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=1.3e-29 Score=271.72 Aligned_cols=254 Identities=15% Similarity=0.132 Sum_probs=213.3
Q ss_pred eeEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCC
Q 006825 315 WKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVT 391 (630)
Q Consensus 315 ~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpd 391 (630)
..++|++.||+.+ ....+.+|...|++|+|+| +||+|+.|++|+ +||+.+++.+.++. +|...|.++++ +
T Consensus 126 tV~lWd~~tg~~~---~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~-iWd~~~~~~~~~~~-~h~~~v~~~s~--~ 198 (420)
T 4gga_A 126 SVYLWSASSGDIL---QLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQ-LWDVQQQKRLRNMT-SHSARVGSLSW--N 198 (420)
T ss_dssp EEEEEETTTCCEE---EEEECCSTTCCEEEEEECTTSSEEEEEETTSCEE-EEETTTTEEEEEEC-CCSSCEEEEEE--E
T ss_pred EEEEEECCCCCEE---EEEEecCCCCcEEEEEECCCCCEEEEEECCCeEE-EEEcCCCcEEEEEe-CCCCceEEEee--C
Confidence 5889999999887 1224567889999999999 899999999999 99999999999998 99999987766 5
Q ss_pred CCeEEeecCCC-----C-------CccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCc
Q 006825 392 GHKERRSSDER-----D-------TSSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNG 457 (630)
Q Consensus 392 G~~lasgS~D~-----d-------t~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~ 457 (630)
+.++++|+.|. + ...+.+|...+..+.+.+++ +++++.|+.|++|+...++... ..+..+..|..
T Consensus 199 ~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~-~~~~~~~~~~~ 277 (420)
T 4gga_A 199 SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGW-VPLQTFTQHQG 277 (420)
T ss_dssp TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCS-CCSEEECCCSS
T ss_pred CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccc-eeeeeecccCC
Confidence 68999999887 1 12368899999999999887 8999999999999998765322 24567889999
Q ss_pred CEEEEEEccCC-CEEEEE--eCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEee--CCCeeeeecc
Q 006825 458 SIWSIKFSLDG-RYLASA--GEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKH--LDNHLEKKRR 532 (630)
Q Consensus 458 ~V~sVaFSpDG-~~LASg--S~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs--~Dg~I~i~~~ 532 (630)
.|.+++|+|++ .+|+++ +.|++|+|||+.++.....+ . +...+..+.|+|++..+++++ .|+.|
T Consensus 278 ~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~-----~-~~~~v~~~~~~~~~~~lv~~sg~~d~~I----- 346 (420)
T 4gga_A 278 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV-----D-AHSQVCSILWSPHYKELISGHGFAQNQL----- 346 (420)
T ss_dssp CEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEE-----E-CSSCEEEEEEETTTTEEEEEECTTTCCE-----
T ss_pred ceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceee-----c-cccceeeeeecCCCCeEEEEEecCCCEE-----
Confidence 99999999954 566654 58999999999999888774 2 335688899999999888765 68888
Q ss_pred cccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825 533 GRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS 605 (630)
Q Consensus 533 ~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~ 605 (630)
++|++ +++++.+|.||.+.|++|+|+|+ .+|+|||.|++|||||+....+.+...
T Consensus 347 ------------------~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~ 403 (420)
T 4gga_A 347 ------------------VIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRRE 403 (420)
T ss_dssp ------------------EEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC----
T ss_pred ------------------EEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhh
Confidence 88888 78999999999999999999999 999999999999999998776665554
No 54
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.97 E-value=6.1e-30 Score=292.38 Aligned_cols=262 Identities=15% Similarity=0.153 Sum_probs=220.5
Q ss_pred eeeecCccceeEEEeec----ceEeecCCCccEecccCCCC-----ceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-
Q 006825 333 EMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGG-----GMKSKKKGSWFKSIRTVASSVTGHKERRSSDER- 402 (630)
Q Consensus 333 ~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG-----~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~- 402 (630)
..+.||+..|++|+|+| .|+|||.|++|+ +|++.++ ...+++. +|...|.+|+|+|+|++|++++.|+
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~-~W~~~~~~~~~~~~~~~~~-~h~~~v~~v~~s~~g~~l~sgs~Dg~ 453 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSII-LWKLTKDDKAYGVAQRRLT-GHSHFVEDVVLSSDGQFALSGSWDGE 453 (694)
T ss_dssp EEEECCSSCEEEEECCTTCCSEEEEEETTSEEE-EEECCCSTTCSCEEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred hhcccCCceeEEEEecCCCCCEEEEEeCCCcEE-EEEccCCCcccccccceec-CCCCcEEEEEECCCCCEEEEEeCCCc
Confidence 45889999999999986 699999999999 9998763 4566777 9999999999999999999999997
Q ss_pred ----C--C----ccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCC--
Q 006825 403 ----D--T----SSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDG-- 468 (630)
Q Consensus 403 ----d--t----~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG-- 468 (630)
+ + ..+.+|...|.++.+++++ +++++.|++|++||...... ........+|...|.+++|+|++
T Consensus 454 v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~ 531 (694)
T 3dm0_A 454 LRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECK--YTISEGGEGHRDWVSCVRFSPNTLQ 531 (694)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE--EEECSSTTSCSSCEEEEEECSCSSS
T ss_pred EEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcc--eeeccCCCCCCCcEEEEEEeCCCCc
Confidence 2 1 2367999999999999987 99999999999999754321 11112236899999999999987
Q ss_pred CEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCcccc
Q 006825 469 RYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVV 548 (630)
Q Consensus 469 ~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~ 548 (630)
.+|++|+.|++|+|||+.+++....+ .+|...|.+++|+|++.+|++++.|+.|
T Consensus 532 ~~l~s~s~d~~v~vwd~~~~~~~~~~-----~~h~~~v~~v~~spdg~~l~sg~~Dg~i--------------------- 585 (694)
T 3dm0_A 532 PTIVSASWDKTVKVWNLSNCKLRSTL-----AGHTGYVSTVAVSPDGSLCASGGKDGVV--------------------- 585 (694)
T ss_dssp CEEEEEETTSCEEEEETTTCCEEEEE-----CCCSSCEEEEEECTTSSEEEEEETTSBC---------------------
T ss_pred ceEEEEeCCCeEEEEECCCCcEEEEE-----cCCCCCEEEEEEeCCCCEEEEEeCCCeE---------------------
Confidence 68999999999999999988877764 7999999999999999999999999999
Q ss_pred ccEEEeC-CCCceEEeccCCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEe-cC-------------------
Q 006825 549 PETVFAL-SDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HS------------------- 607 (630)
Q Consensus 549 ~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~------------------- 607 (630)
++|++ +++++..+.. ...|.+++|+|++++++++.|+.|+|||+.+++++..+. |.
T Consensus 586 --~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (694)
T 3dm0_A 586 --LLWDLAEGKKLYSLEA-NSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKV 662 (694)
T ss_dssp --EEEETTTTEEEECCBC-SSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC----------------CC
T ss_pred --EEEECCCCceEEEecC-CCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhccccccccccccccccccCCcee
Confidence 78887 6777777664 467999999999555555667889999999999988775 21
Q ss_pred CceEEEE-cCCCcEEEEecce
Q 006825 608 DYDISLV-DRLMLRFAYGAFL 627 (630)
Q Consensus 608 ~~V~sVa-s~~~~~lAsgs~~ 627 (630)
..|++++ ++++..|++++.+
T Consensus 663 ~~~~~l~~spdg~~l~sgs~D 683 (694)
T 3dm0_A 663 IYCTSLNWSADGSTLFSGYTD 683 (694)
T ss_dssp CCEEEEEECTTSSEEEEEETT
T ss_pred EEeeeEEEcCCCCEEEEEcCC
Confidence 2477888 9999999998765
No 55
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=2e-30 Score=275.05 Aligned_cols=224 Identities=13% Similarity=0.030 Sum_probs=178.5
Q ss_pred eeEEEEcCCCce-E---eeecceeeecCccceeEEEeec---c--eEeecCCCccEecccCCCCceeEEecCCccCCEEE
Q 006825 315 WKKVKEVGTGRQ-L---TIEEFEMCVGHSPIVQELMRRQ---N--VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRT 385 (630)
Q Consensus 315 ~~~l~dv~TG~~-l---t~eef~~l~GHs~~V~~Lafs~---~--laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~s 385 (630)
..++|++.++.. + ....+....++...|+.++|+| . +|+|+.|++|| +||+.+++++.++. |...|++
T Consensus 105 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~-iwd~~~~~~~~~~~--~~~~V~~ 181 (365)
T 4h5i_A 105 HLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMR-IIDPSDLTEKFEIE--TRGEVKD 181 (365)
T ss_dssp CEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEE-EEETTTTEEEEEEE--CSSCCCE
T ss_pred cEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEE-EeECCCCcEEEEeC--CCCceEE
Confidence 356777765432 2 2223344556677899999999 3 45778999999 99999999998875 6778999
Q ss_pred EEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEc
Q 006825 386 VASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFS 465 (630)
Q Consensus 386 VAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFS 465 (630)
|+|+|||+++++++++ .+++|+..+++. .....+.+|...|.+++|+
T Consensus 182 v~fspdg~~l~s~s~~------------------------------~~~~~~~~~~~~---~~~~~~~~~~~~v~~v~fs 228 (365)
T 4h5i_A 182 LHFSTDGKVVAYITGS------------------------------SLEVISTVTGSC---IARKTDFDKNWSLSKINFI 228 (365)
T ss_dssp EEECTTSSEEEEECSS------------------------------CEEEEETTTCCE---EEEECCCCTTEEEEEEEEE
T ss_pred EEEccCCceEEeccce------------------------------eEEEEEeccCcc---eeeeecCCCCCCEEEEEEc
Confidence 9999999999766544 266666655432 1224467899999999999
Q ss_pred cCCCEEEEEeCCC----cEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccccccccccc
Q 006825 466 LDGRYLASAGEDC----VIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSL 541 (630)
Q Consensus 466 pDG~~LASgS~Dg----tIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~ 541 (630)
|+|++|++++.|+ ++++|++......... .....+|...|.+++|+|+|++|++|+.|++|
T Consensus 229 pdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V-------------- 293 (365)
T 4h5i_A 229 ADDTVLIAASLKKGKGIVLTKISIKSGNTSVLR-SKQVTNRFKGITSMDVDMKGELAVLASNDNSI-------------- 293 (365)
T ss_dssp ETTEEEEEEEESSSCCEEEEEEEEETTEEEEEE-EEEEESSCSCEEEEEECTTSCEEEEEETTSCE--------------
T ss_pred CCCCEEEEEecCCcceeEEeecccccceeccee-eeeecCCCCCeEeEEECCCCCceEEEcCCCEE--------------
Confidence 9999999999988 6889998766543211 12247889999999999999999999999999
Q ss_pred ccCccccccEEEeC-CCCceEEe-ccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCC
Q 006825 542 SLDHMVVPETVFAL-SDKPICSF-QGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK 598 (630)
Q Consensus 542 s~d~~i~~~~Vwdl-sgk~l~tL-~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg 598 (630)
+||++ +++++.++ .+|...|++|+|+|| ++|||||.|++|||||+...
T Consensus 294 ---------~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 294 ---------ALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp ---------EEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred ---------EEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 88998 78888885 799999999999999 99999999999999999653
No 56
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.97 E-value=4.2e-30 Score=269.82 Aligned_cols=258 Identities=14% Similarity=0.016 Sum_probs=213.1
Q ss_pred eeeecCccceeEEEeec----ceEeecCCCccEecccCCCCceeEEecC-CccCCEEEEEEcC-CCCeEEeecCCC----
Q 006825 333 EMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGMKSKKKG-SWFKSIRTVASSV-TGHKERRSSDER---- 402 (630)
Q Consensus 333 ~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~~~~lk~-gH~~~V~sVAfSp-dG~~lasgS~D~---- 402 (630)
..+.+|...|.+|+|+| .|++|+.|++++ +||+.+++....++. +|...|.+++|+| +++++++++.|+
T Consensus 67 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~-iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~i 145 (383)
T 3ei3_B 67 RTASPFDRRVTSLEWHPTHPTTVAVGSKGGDII-LWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTL 145 (383)
T ss_dssp EEECCCSSCEEEEEECSSCTTEEEEEEBTSCEE-EEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEE
T ss_pred EeccCCCCCEEEEEECCCCCCEEEEEcCCCeEE-EEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEE
Confidence 67889999999999998 699999999999 999999988887763 7999999999999 789999999887
Q ss_pred -CCc-----c---ccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCC-E
Q 006825 403 -DTS-----S---EKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGR-Y 470 (630)
Q Consensus 403 -dt~-----s---~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~-~ 470 (630)
+.. . ..+|...|.++++++++ +++++.|+.|++||+... .+..+.+|...|.+++|+|+++ +
T Consensus 146 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~------~~~~~~~h~~~v~~~~~~~~~~~~ 219 (383)
T 3ei3_B 146 RDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGH------EIFKEKLHKAKVTHAEFNPRCDWL 219 (383)
T ss_dssp EETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSC------EEEEEECSSSCEEEEEECSSCTTE
T ss_pred EECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCC------EEEEeccCCCcEEEEEECCCCCCE
Confidence 111 1 24455789999999887 999999999999998432 5678899999999999999999 9
Q ss_pred EEEEeCCCcEEEEECcCC----ceeeeeecccccCcccceEEEEECC-CCCEEEEeeCCCeeeeecccccccccccccCc
Q 006825 471 LASAGEDCVIHVWQVVES----ERKGELLEKQEDGHLNMLLLANGSP-EPTSLSPKHLDNHLEKKRRGRSINRKSLSLDH 545 (630)
Q Consensus 471 LASgS~DgtIrVWDl~tg----~~~~~l~~~~~~gh~~~V~svafSp-dg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~ 545 (630)
|++|+.|++|+|||+.+. ..+.. .+|...|.+++|+| ++.+|++++.|+.|++|+..
T Consensus 220 l~s~~~d~~i~iwd~~~~~~~~~~~~~------~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~------------ 281 (383)
T 3ei3_B 220 MATSSVDATVKLWDLRNIKDKNSYIAE------MPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSY------------ 281 (383)
T ss_dssp EEEEETTSEEEEEEGGGCCSTTCEEEE------EECSSCEEEEEECTTTSCEEEEEESSSEEEEEETT------------
T ss_pred EEEEeCCCEEEEEeCCCCCcccceEEE------ecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECC------------
Confidence 999999999999999984 33333 36889999999999 99999999999999544433
Q ss_pred cccccEEEeCCCCceEEeccCC-----------------CCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEe---
Q 006825 546 MVVPETVFALSDKPICSFQGHL-----------------DDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS--- 605 (630)
Q Consensus 546 ~i~~~~Vwdlsgk~l~tL~GHs-----------------~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~l~t~~--- 605 (630)
+++.+.++.+|. ..+..++|+|++.+ +++.|++|+|||+.+++++.++.
T Consensus 282 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~ 350 (383)
T 3ei3_B 282 ----------DWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRDPN 350 (383)
T ss_dssp ----------BTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTCCEEEEECBTT
T ss_pred ----------CCccccccccccccccccccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecCCCceeeeecCCC
Confidence 334444444332 45566778888333 88899999999999999999997
Q ss_pred cCCceEEEE-cCCCcEEEEecc
Q 006825 606 HSDYDISLV-DRLMLRFAYGAF 626 (630)
Q Consensus 606 H~~~V~sVa-s~~~~~lAsgs~ 626 (630)
|...+.+++ ++++..+++++.
T Consensus 351 ~~~~~~~~~~s~~g~~l~s~sd 372 (383)
T 3ei3_B 351 AAGIISLNKFSPTGDVLASGMG 372 (383)
T ss_dssp BCSCCCEEEECTTSSEEEEEET
T ss_pred CCceEEEEEEecCccEEEEecC
Confidence 567777778 889999998863
No 57
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.2e-29 Score=256.47 Aligned_cols=264 Identities=13% Similarity=0.044 Sum_probs=229.6
Q ss_pred eeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-----C-
Q 006825 333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-----D- 403 (630)
Q Consensus 333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-----d- 403 (630)
.++.||...|.+|+|+| .|++|+.|++++ +||+.+++.+.++. +|...|.+++|+|+|+++++++.|+ +
T Consensus 26 ~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~-vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 103 (369)
T 3zwl_B 26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSAS-VWYSLNGERLGTLD-GHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV 103 (369)
T ss_dssp EEEECCSSCEEEEEECTTSCEEEEEESSSCEE-EEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred EEEEEeeceEEEEEEcCCCCEEEEEeCCCEEE-EEeCCCchhhhhhh-hcCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 56899999999999998 799999999999 99999999999998 9999999999999999999999887 1
Q ss_pred -Ccc---ccCCcceEEEeecCCCe--EEEecCC-----cEEEEEeCCCCcccce------eeeeEecccCc--CEEEEEE
Q 006825 404 -TSS---EKGGRRSSSATDDSQDV--SFHGQER-----VRVRQYGKSCKDLTAL------YKCQEIQAHNG--SIWSIKF 464 (630)
Q Consensus 404 -t~s---~~gh~~~Vsa~~~s~d~--l~Sgs~D-----g~VriWd~~~~el~~~------~~v~tL~gHt~--~V~sVaF 464 (630)
+.. ...+...+.++.+++++ ++++..+ +.|++|+......... ..+..+.+|.+ .|.+++|
T Consensus 104 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (369)
T 3zwl_B 104 SNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGW 183 (369)
T ss_dssp TTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEE
T ss_pred CCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEE
Confidence 111 22277789999999988 8888888 9999999876542111 13456677877 9999999
Q ss_pred ccCCCEEEEEeCCCcEEEEECcC-CceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccccccccccccc
Q 006825 465 SLDGRYLASAGEDCVIHVWQVVE-SERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSL 543 (630)
Q Consensus 465 SpDG~~LASgS~DgtIrVWDl~t-g~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~ 543 (630)
+|++++|++++.|+.|++||+.+ ...+..+ ..|...|.+++|+|++.+|++++.|+.|
T Consensus 184 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~d~~i---------------- 242 (369)
T 3zwl_B 184 STKGKYIIAGHKDGKISKYDVSNNYEYVDSI-----DLHEKSISDMQFSPDLTYFITSSRDTNS---------------- 242 (369)
T ss_dssp CGGGCEEEEEETTSEEEEEETTTTTEEEEEE-----ECCSSCEEEEEECTTSSEEEEEETTSEE----------------
T ss_pred cCCCCEEEEEcCCCEEEEEECCCCcEeEEEE-----ecCCCceeEEEECCCCCEEEEecCCceE----------------
Confidence 99999999999999999999998 5555553 6788999999999999999999999999
Q ss_pred CccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCC--------------cEEEEeCCCCcEEEEEe-c
Q 006825 544 DHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDK--------------TVRLWHLSSKTCLKIFS-H 606 (630)
Q Consensus 544 d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~Dg--------------tVrIWDl~tg~~l~t~~-H 606 (630)
.+|++ +++.+..+. |...+..++|+|+ .+|++++.++ .|++||+.+++++..+. |
T Consensus 243 -------~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 314 (369)
T 3zwl_B 243 -------FLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGH 314 (369)
T ss_dssp -------EEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECC
T ss_pred -------EEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecc
Confidence 78888 667777776 8889999999999 9999999998 89999999999999998 9
Q ss_pred CCceEEEE-cCCCcEEEEecce
Q 006825 607 SDYDISLV-DRLMLRFAYGAFL 627 (630)
Q Consensus 607 ~~~V~sVa-s~~~~~lAsgs~~ 627 (630)
...|++++ ++++..+++++.+
T Consensus 315 ~~~v~~~~~s~~~~~l~s~~~d 336 (369)
T 3zwl_B 315 FGPLNTVAISPQGTSYASGGED 336 (369)
T ss_dssp SSCEEEEEECTTSSEEEEEETT
T ss_pred cCcEEEEEECCCCCEEEEEcCC
Confidence 99999999 8899999988654
No 58
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.97 E-value=1.6e-30 Score=280.46 Aligned_cols=265 Identities=14% Similarity=0.058 Sum_probs=210.4
Q ss_pred eeeecCccceeEEEeec----ceEeecCCCccEecccCCCCceeEEec-CCccCCEEEEEEcC-CCCeEEeecCCC----
Q 006825 333 EMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGMKSKKK-GSWFKSIRTVASSV-TGHKERRSSDER---- 402 (630)
Q Consensus 333 ~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~~~~lk-~gH~~~V~sVAfSp-dG~~lasgS~D~---- 402 (630)
....+|...|++|+|+| .||+|+.|++|+ |||+.++.....++ .+|.+.|.+|+|+| ++.+|++++.|+
T Consensus 113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~-lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~i 191 (435)
T 4e54_B 113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIM-LWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL 191 (435)
T ss_dssp CEEEECSSCEEEEEECSSCTTCEEEEETTSCEE-EECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEE
T ss_pred ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEE-EEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEE
Confidence 45678899999999998 699999999999 99999887554433 28999999999998 789999999987
Q ss_pred -CC--cc------ccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCC-E
Q 006825 403 -DT--SS------EKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGR-Y 470 (630)
Q Consensus 403 -dt--~s------~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~-~ 470 (630)
+. .. ...+...+.++++++++ +++|+.|+.|++||+..+ .+.++.+|...|++|+|+|++. +
T Consensus 192 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~------~~~~~~~h~~~v~~v~~~p~~~~~ 265 (435)
T 4e54_B 192 QDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK------ELWNLRMHKKKVTHVALNPCCDWF 265 (435)
T ss_dssp EETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC------BCCCSBCCSSCEEEEEECTTCSSE
T ss_pred eeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc------eeEEEecccceEEeeeecCCCceE
Confidence 21 11 22334456777777776 899999999999998765 3567889999999999999876 8
Q ss_pred EEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCcccccc
Q 006825 471 LASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPE 550 (630)
Q Consensus 471 LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~ 550 (630)
|++|+.|++|+|||+.+......+. ...+|...|.+++|+|++.+|++++.|+.|
T Consensus 266 ~~s~s~d~~v~iwd~~~~~~~~~~~--~~~~h~~~v~~~~~spdg~~l~s~~~D~~i----------------------- 320 (435)
T 4e54_B 266 LATASVDQTVKIWDLRQVRGKASFL--YSLPHRHPVNAACFSPDGARLLTTDQKSEI----------------------- 320 (435)
T ss_dssp EEEEETTSBCCEEETTTCCSSSCCS--BCCBCSSCEEECCBCTTSSEEEEEESSSCE-----------------------
T ss_pred EEEecCcceeeEEecccccccceEE--EeeeccccccceeECCCCCeeEEEcCCCEE-----------------------
Confidence 8999999999999998876655432 136799999999999999999999999999
Q ss_pred EEEeC-CCCceEEeccCCCC------EEEEEEcCC-CeEEEEE------------CCCcEEEEeCCCCcEEEEEe--cCC
Q 006825 551 TVFAL-SDKPICSFQGHLDD------VLDLSWSKS-QHLLSSS------------MDKTVRLWHLSSKTCLKIFS--HSD 608 (630)
Q Consensus 551 ~Vwdl-sgk~l~tL~GHs~~------V~sLafSPd-~~LaSgS------------~DgtVrIWDl~tg~~l~t~~--H~~ 608 (630)
++|++ +++.+..+.+|... +..+.|+|+ .++++++ .+++|+|||+.+++++..+. |..
T Consensus 321 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~ 400 (435)
T 4e54_B 321 RVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESS 400 (435)
T ss_dssp EEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCC
T ss_pred EEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCC
Confidence 66666 55666666555432 234556665 5555443 45689999999999999875 889
Q ss_pred ceEEEE--cCCCcEEEEecceec
Q 006825 609 YDISLV--DRLMLRFAYGAFLNV 629 (630)
Q Consensus 609 ~V~sVa--s~~~~~lAsgs~~nI 629 (630)
.|.++. +|++.+|++++...|
T Consensus 401 ~v~s~~~fspdg~~lasg~d~~i 423 (435)
T 4e54_B 401 GISSLNEFNPMGDTLASAMGYHI 423 (435)
T ss_dssp CCCCEEEECTTSSCEEEECSSEE
T ss_pred cEEEEEEECCCCCEEEEEcCCcE
Confidence 999885 889999998875554
No 59
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=8.5e-30 Score=260.97 Aligned_cols=266 Identities=9% Similarity=0.022 Sum_probs=221.0
Q ss_pred cceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCc---eeEEecCCccCCEEEEEEcCCCC-eEEeecCCC-
Q 006825 331 EFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGG---MKSKKKGSWFKSIRTVASSVTGH-KERRSSDER- 402 (630)
Q Consensus 331 ef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~---~~~~lk~gH~~~V~sVAfSpdG~-~lasgS~D~- 402 (630)
.++...+|...|.+++|+| .|++|+.|++++ +|++.++. ....+. +|...|.+++|+|+|+ ++++++.|+
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~-iw~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~ 80 (342)
T 1yfq_A 3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLT-VYKFDIQAKNVDLLQSL-RYKHPLLCCNFIDNTDLQIYVGTVQGE 80 (342)
T ss_dssp EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEE-EEEEETTTTEEEEEEEE-ECSSCEEEEEEEESSSEEEEEEETTSC
T ss_pred ceecccCCCCcEEEEEEcCCCCEEEEEcCCCeEE-EEEeCCCCccccceeee-ecCCceEEEEECCCCCcEEEEEcCCCe
Confidence 3455679999999999998 699999999999 99999887 345555 8999999999999999 999999886
Q ss_pred ----CC-c-----cccC--CcceEEEeecCC-CeEEEecCCcEEEEEeCCCCcccc----eeeeeEecccCcCEEEEEEc
Q 006825 403 ----DT-S-----SEKG--GRRSSSATDDSQ-DVSFHGQERVRVRQYGKSCKDLTA----LYKCQEIQAHNGSIWSIKFS 465 (630)
Q Consensus 403 ----dt-~-----s~~g--h~~~Vsa~~~s~-d~l~Sgs~Dg~VriWd~~~~el~~----~~~v~tL~gHt~~V~sVaFS 465 (630)
+. . ...+ |...|.++.+.+ ..+++++.|+.|++||+...+... ..++..+. |...|.+++|+
T Consensus 81 i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~ 159 (342)
T 1yfq_A 81 ILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTN 159 (342)
T ss_dssp EEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEEC
T ss_pred EEEEEeccCCceEeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEec
Confidence 33 2 2667 999999999986 339999999999999986510000 12344455 99999999999
Q ss_pred cCCCEEEEEeCCCcEEEEECcC-CceeeeeecccccCcccceEEEEECC-CCCEEEEeeCCCeeeeeccccccccccccc
Q 006825 466 LDGRYLASAGEDCVIHVWQVVE-SERKGELLEKQEDGHLNMLLLANGSP-EPTSLSPKHLDNHLEKKRRGRSINRKSLSL 543 (630)
Q Consensus 466 pDG~~LASgS~DgtIrVWDl~t-g~~~~~l~~~~~~gh~~~V~svafSp-dg~~lasgs~Dg~I~i~~~~~~~~~~s~s~ 543 (630)
|++ |++++.|+.|++||+.+ +....... ...|...+.+++|+| ++.++++++.|+.|
T Consensus 160 ~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i---------------- 218 (342)
T 1yfq_A 160 SSR--LIVGMNNSQVQWFRLPLCEDDNGTIE---ESGLKYQIRDVALLPKEQEGYACSSIDGRV---------------- 218 (342)
T ss_dssp SSE--EEEEESTTEEEEEESSCCTTCCCEEE---ECSCSSCEEEEEECSGGGCEEEEEETTSEE----------------
T ss_pred CCc--EEEEeCCCeEEEEECCccccccceee---ecCCCCceeEEEECCCCCCEEEEEecCCcE----------------
Confidence 988 99999999999999988 55432211 357788999999999 99999999999999
Q ss_pred CccccccEEEeC-CC------CceEEeccCCC---------CEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-
Q 006825 544 DHMVVPETVFAL-SD------KPICSFQGHLD---------DVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS- 605 (630)
Q Consensus 544 d~~i~~~~Vwdl-sg------k~l~tL~GHs~---------~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~- 605 (630)
.+|++ .. +++..+.+|.. .|++++|+|+ .+|++++.||+|+|||+.+++++.++.
T Consensus 219 -------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 291 (342)
T 1yfq_A 219 -------AVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK 291 (342)
T ss_dssp -------EEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC
T ss_pred -------EEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhc
Confidence 66666 22 67778888865 9999999999 999999999999999999999999998
Q ss_pred c-CCceEEEEcCCCcEEEEeccee
Q 006825 606 H-SDYDISLVDRLMLRFAYGAFLN 628 (630)
Q Consensus 606 H-~~~V~sVas~~~~~lAsgs~~n 628 (630)
| ...|++++ +++..+++++.+.
T Consensus 292 ~h~~~v~~~~-~~~~~l~s~s~Dg 314 (342)
T 1yfq_A 292 FNEDSVVKIA-CSDNILCLATSDD 314 (342)
T ss_dssp CSSSEEEEEE-ECSSEEEEEEECT
T ss_pred ccCCCceEec-CCCCeEEEEecCC
Confidence 7 99999999 8999999987654
No 60
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.97 E-value=8.5e-30 Score=261.54 Aligned_cols=260 Identities=15% Similarity=0.142 Sum_probs=212.8
Q ss_pred eeeecCccceeEEEeec----ceEeecC---CCccEecccCCCCceeEEecCCccCCEEEEEEcCC---CCeEEeecCCC
Q 006825 333 EMCVGHSPIVQELMRRQ----NVEEGNK---DSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVT---GHKERRSSDER 402 (630)
Q Consensus 333 ~~l~GHs~~V~~Lafs~----~laSgS~---D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpd---G~~lasgS~D~ 402 (630)
..+.||...|.+++|+| .+++|+. |++++ +||+.+++.......+|...|.+++|+|+ |+++++++.|+
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~-iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 90 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQ-LYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGG 90 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEE-EEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTS
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEE-EEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCC
Confidence 34578999999999999 5677877 99999 99999998877666589999999999998 79999999886
Q ss_pred -----C--C-----ccccCCcceEEEe------ecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCc----C
Q 006825 403 -----D--T-----SSEKGGRRSSSAT------DDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNG----S 458 (630)
Q Consensus 403 -----d--t-----~s~~gh~~~Vsa~------~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~----~ 458 (630)
+ + ..+.+|...|.++ ++++++ +++++.|+.|++||+..++. .+..+..|.+ .
T Consensus 91 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~----~~~~~~~~~~~~~~~ 166 (357)
T 3i2n_A 91 NLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDD----PVANMEPVQGENKRD 166 (357)
T ss_dssp CEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSS----CSEEECCCTTSCCCC
T ss_pred eEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCC----cceeccccCCCCCCc
Confidence 1 1 2267899999998 456665 99999999999999987642 3455666555 8
Q ss_pred EEEEE----EccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECC---CCCEEEEeeCCCeeeeec
Q 006825 459 IWSIK----FSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSP---EPTSLSPKHLDNHLEKKR 531 (630)
Q Consensus 459 V~sVa----FSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSp---dg~~lasgs~Dg~I~i~~ 531 (630)
|++++ |+|++++|++++.|+.|++||+.+++.... ..|...|.+++|+| ++.++++++.|+.|
T Consensus 167 v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i---- 236 (357)
T 3i2n_A 167 CWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE------TNIKNGVCSLEFDRKDISMNKLVATSLEGKF---- 236 (357)
T ss_dssp EEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE------EECSSCEEEEEESCSSSSCCEEEEEESTTEE----
T ss_pred eEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee------cCCCCceEEEEcCCCCCCCCEEEEECCCCeE----
Confidence 99999 788999999999999999999998876443 56778999999999 99999999999999
Q ss_pred ccccccccccccCccccccEEEeC-CCCceE-----EeccCCCCEEEEEEcCC-C-eEEEEECCCcEEEEeCCCC-----
Q 006825 532 RGRSINRKSLSLDHMVVPETVFAL-SDKPIC-----SFQGHLDDVLDLSWSKS-Q-HLLSSSMDKTVRLWHLSSK----- 598 (630)
Q Consensus 532 ~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~-----tL~GHs~~V~sLafSPd-~-~LaSgS~DgtVrIWDl~tg----- 598 (630)
++|++ +++++. .+.+|...|++++|+|+ . +|++++.|++|+|||+.++
T Consensus 237 -------------------~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 297 (357)
T 3i2n_A 237 -------------------HVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSK 297 (357)
T ss_dssp -------------------EEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--
T ss_pred -------------------EEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccccc
Confidence 55555 333333 34499999999999999 5 8999999999999999754
Q ss_pred --------------cEEEEEe-cCCceEEEE-cCCCcEEE-Eecc
Q 006825 599 --------------TCLKIFS-HSDYDISLV-DRLMLRFA-YGAF 626 (630)
Q Consensus 599 --------------~~l~t~~-H~~~V~sVa-s~~~~~lA-sgs~ 626 (630)
+++.++. |...|++++ ++++..++ +++.
T Consensus 298 ~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~ 342 (357)
T 3i2n_A 298 KDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSF 342 (357)
T ss_dssp CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEET
T ss_pred ccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecC
Confidence 4677777 999999999 88887776 5553
No 61
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.97 E-value=8.6e-30 Score=263.52 Aligned_cols=260 Identities=14% Similarity=0.060 Sum_probs=203.3
Q ss_pred eeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEec-CCccCCEEEEEEcCCCCeEEeecCCCC-----
Q 006825 333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKK-GSWFKSIRTVASSVTGHKERRSSDERD----- 403 (630)
Q Consensus 333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk-~gH~~~V~sVAfSpdG~~lasgS~D~d----- 403 (630)
..+.+|...|..++|+| .|++++.|++++ +||+.+++....+. .+|...|.+++|+|+|+++++++.++.
T Consensus 46 ~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~-vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d 124 (372)
T 1k8k_C 46 HELKEHNGQVTGVDWAPDSNRIVTCGTDRNAY-VWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICY 124 (372)
T ss_dssp EEEECCSSCEEEEEEETTTTEEEEEETTSCEE-EEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEE
T ss_pred eeecCCCCcccEEEEeCCCCEEEEEcCCCeEE-EEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEE
Confidence 66779999999999998 799999999999 99999988655543 389999999999999999999998871
Q ss_pred --Cc--------cccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCc-------------ccceeeeeEecccCcC
Q 006825 404 --TS--------SEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKD-------------LTALYKCQEIQAHNGS 458 (630)
Q Consensus 404 --t~--------s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~e-------------l~~~~~v~tL~gHt~~ 458 (630)
.. ...+|...|.++.+++++ +++++.|+.|++||+.... .....++..+.+|...
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (372)
T 1k8k_C 125 FEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGW 204 (372)
T ss_dssp EETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSC
T ss_pred ecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCe
Confidence 11 136788999999999887 8999999999999964221 1122356788899999
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccc--cc
Q 006825 459 IWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGR--SI 536 (630)
Q Consensus 459 V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~--~~ 536 (630)
|.+++|+|++++|++++.|++|++||+.+++.+..+ ..|...|.+++|+|++.+++++ .|+.|.+|+... ..
T Consensus 205 v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~ 278 (372)
T 1k8k_C 205 VHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL-----ASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGK 278 (372)
T ss_dssp EEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEE-----ECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTE
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEE-----ccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCce
Confidence 999999999999999999999999999999888775 6788899999999999988888 899998888755 21
Q ss_pred --cccccccC-----ccccccEEE---eCCCCce------EEe-ccCCCCEEEEEEc-CC----CeEEEEECCCcEEEEe
Q 006825 537 --NRKSLSLD-----HMVVPETVF---ALSDKPI------CSF-QGHLDDVLDLSWS-KS----QHLLSSSMDKTVRLWH 594 (630)
Q Consensus 537 --~~~s~s~d-----~~i~~~~Vw---dlsgk~l------~tL-~GHs~~V~sLafS-Pd----~~LaSgS~DgtVrIWD 594 (630)
........ .......+| +..++.. ..+ .+|...|++++|+ ++ .+|+||+.||+|+|||
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~ 358 (372)
T 1k8k_C 279 LSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 358 (372)
T ss_dssp EEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred EEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEE
Confidence 11111000 000001233 3334433 444 4999999999977 44 5999999999999999
Q ss_pred CCCCc
Q 006825 595 LSSKT 599 (630)
Q Consensus 595 l~tg~ 599 (630)
+.+++
T Consensus 359 ~~~~~ 363 (372)
T 1k8k_C 359 VRSLE 363 (372)
T ss_dssp HHHHH
T ss_pred ecChh
Confidence 87654
No 62
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=2.4e-29 Score=254.46 Aligned_cols=250 Identities=14% Similarity=0.120 Sum_probs=208.1
Q ss_pred CCceeEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEE
Q 006825 312 DGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVAS 388 (630)
Q Consensus 312 dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAf 388 (630)
|+ ..++||+.||+.+. ...+.+|...|.+|+|+| .|++|+.|++++ +||+.+++.+.++. +|...+.++
T Consensus 44 D~-tV~iWd~~tg~~~~---~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~-iw~~~~~~~~~~~~-~h~~~~~~~-- 115 (318)
T 4ggc_A 44 DN-SVYLWSASSGDILQ---LLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQ-LWDVQQQKRLRNMT-SHSARVGSL-- 115 (318)
T ss_dssp TT-EEEEEETTTCCEEE---EEECCSTTCCEEEEEECTTSSEEEEEETTSEEE-EEETTTTEEEEEEE-CCSSCEEEE--
T ss_pred CC-EEEEEECCCCCEEE---EEEecCCCCeEEEEEECCCCCEEEEEECCCcEE-EeecCCceeEEEec-CccceEEEe--
Confidence 44 36788888888771 123457889999999999 799999999999 99999999999999 999999755
Q ss_pred cCCCCeEEeecCCCC------------CccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecc
Q 006825 389 SVTGHKERRSSDERD------------TSSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQA 454 (630)
Q Consensus 389 SpdG~~lasgS~D~d------------t~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~g 454 (630)
++++..+++++.+.. ...+.+|...+....+.+.+ +++++.|++|++||..+++... ........
T Consensus 116 ~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~ 194 (318)
T 4ggc_A 116 SWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGW-VPLQTFTQ 194 (318)
T ss_dssp EEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBS-CCSEEECC
T ss_pred ecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccc-cceeeecc
Confidence 556689999988861 12367899999999988887 8999999999999998765332 23456778
Q ss_pred cCcCEEEEEEccCCC---EEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEee--CCCeeee
Q 006825 455 HNGSIWSIKFSLDGR---YLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKH--LDNHLEK 529 (630)
Q Consensus 455 Ht~~V~sVaFSpDG~---~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs--~Dg~I~i 529 (630)
|.+.|.+++++|++. .+++++.|++|+|||......... ..+...+..+.|+|++..+++++ .|+.|
T Consensus 195 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i-- 266 (318)
T 4ggc_A 195 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA------VDAHSQVCSILWSPHYKELISGHGFAQNQL-- 266 (318)
T ss_dssp CCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEE------EECSSCEEEEEEETTTTEEEEEECTTTCCE--
T ss_pred cCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccc------ccceeeeeeeeecccccceEEEEEcCCCEE--
Confidence 999999999999765 335678999999999988776655 35667789999999998887754 78888
Q ss_pred ecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCc
Q 006825 530 KRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKT 599 (630)
Q Consensus 530 ~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~ 599 (630)
++|++ +++++.+|.||.+.|++|+|+|+ .+|+|||.|++|||||+.+..
T Consensus 267 ---------------------~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 267 ---------------------VIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp ---------------------EEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred ---------------------EEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 88988 78999999999999999999999 999999999999999997643
No 63
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.97 E-value=2e-29 Score=289.66 Aligned_cols=263 Identities=13% Similarity=0.080 Sum_probs=234.7
Q ss_pred ecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC----
Q 006825 330 EEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER---- 402 (630)
Q Consensus 330 eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~---- 402 (630)
+...++.||+..|.+++|+| .|++|+.|++|+ +||+.+|+.+.++. +|...|++++|+|+|+++++++.|+
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~-iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 81 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVE-IWNYETQVEVRSIQ-VTETPVRAGKFIARKNWIIVGSDDFRIRV 81 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEE-EEETTTTEEEEEEE-CCSSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEE-EEECCCCceEEEEe-cCCCcEEEEEEeCCCCEEEEEeCCCeEEE
Confidence 34478899999999999999 799999999999 99999999999999 9999999999999999999999887
Q ss_pred ---CC----ccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc-CCCEEE
Q 006825 403 ---DT----SSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLA 472 (630)
Q Consensus 403 ---dt----~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp-DG~~LA 472 (630)
.+ ..+.+|...|.++.|++++ +++++.|++|++|++..+. ...+.+.+|...|.+++|+| ++++|+
T Consensus 82 w~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~----~~~~~~~~~~~~v~~~~~~p~~~~~l~ 157 (814)
T 3mkq_A 82 FNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW----ALEQTFEGHEHFVMCVAFNPKDPSTFA 157 (814)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS----EEEEEEECCSSCEEEEEEETTEEEEEE
T ss_pred EECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc----eEEEEEcCCCCcEEEEEEEcCCCCEEE
Confidence 22 2267899999999999988 8999999999999987652 25678899999999999999 899999
Q ss_pred EEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECC--CCCEEEEeeCCCeeeeecccccccccccccCcccccc
Q 006825 473 SAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSP--EPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPE 550 (630)
Q Consensus 473 SgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSp--dg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~ 550 (630)
+++.|++|++||+.++.....+ ...+...+..++|+| ++.++++++.|+.|
T Consensus 158 ~~~~dg~v~vwd~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i----------------------- 210 (814)
T 3mkq_A 158 SGCLDRTVKVWSLGQSTPNFTL----TTGQERGVNYVDYYPLPDKPYMITASDDLTI----------------------- 210 (814)
T ss_dssp EEETTSEEEEEETTCSSCSEEE----ECCCTTCCCEEEECCSTTCCEEEEECTTSEE-----------------------
T ss_pred EEeCCCeEEEEECCCCcceeEE----ecCCCCCEEEEEEEECCCCCEEEEEeCCCEE-----------------------
Confidence 9999999999999888776665 245558899999999 99999999999999
Q ss_pred EEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCc--EEEEe
Q 006825 551 TVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLML--RFAYG 624 (630)
Q Consensus 551 ~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~--~lAsg 624 (630)
.+|++ +++++.++.+|...|.+++|+|+ .+|++++.||+|++||+.+++++..+. |...|++++ .|.+. .++++
T Consensus 211 ~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 290 (814)
T 3mkq_A 211 KIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG 290 (814)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEE
T ss_pred EEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEE
Confidence 88887 67889999999999999999999 899999999999999999999999998 999999999 77765 46655
Q ss_pred c
Q 006825 625 A 625 (630)
Q Consensus 625 s 625 (630)
.
T Consensus 291 ~ 291 (814)
T 3mkq_A 291 F 291 (814)
T ss_dssp E
T ss_pred e
Confidence 4
No 64
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.97 E-value=6.3e-31 Score=274.56 Aligned_cols=250 Identities=12% Similarity=-0.030 Sum_probs=195.1
Q ss_pred eeeecCccceeEEEeec---ceEeecCCCccEecccCCCC--ceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccc
Q 006825 333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGG--GMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSE 407 (630)
Q Consensus 333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG--~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~ 407 (630)
+.+..|...|.+++|+| .|++|+.|++++ +||+.++ +.+.+++ +|...|.+++|+|+|++|+
T Consensus 5 ~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~-iw~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~----------- 71 (377)
T 3dwl_C 5 QVLHILPKPSYEHAFNSQRTEFVTTTATNQVE-LYEQDGNGWKHARTFS-DHDKIVTCVDWAPKSNRIV----------- 71 (377)
T ss_dssp EEEEECSSCCSCCEECSSSSEEECCCSSSCBC-EEEEETTEEEECCCBC-CCSSCEEEEEECTTTCCEE-----------
T ss_pred eeEecCCCcEEEEEECCCCCEEEEecCCCEEE-EEEccCCceEEEEEEe-cCCceEEEEEEeCCCCEEE-----------
Confidence 34455677899999998 799999999999 9999998 7778888 9999999999999988775
Q ss_pred cCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcC
Q 006825 408 KGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVE 487 (630)
Q Consensus 408 ~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~t 487 (630)
+++.|++|++|++..++ .......+.+|...|++++|+|++++|++|+.|++|++||+.+
T Consensus 72 ------------------s~s~d~~v~vwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 131 (377)
T 3dwl_C 72 ------------------TCSQDRNAYVYEKRPDG--TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQ 131 (377)
T ss_dssp ------------------EEETTSSEEEC--------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC--
T ss_pred ------------------EEeCCCeEEEEEcCCCC--ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECC
Confidence 45667789999998764 1224567889999999999999999999999999999999988
Q ss_pred Cce---eeeeecccccC-cccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC---CCCce
Q 006825 488 SER---KGELLEKQEDG-HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL---SDKPI 560 (630)
Q Consensus 488 g~~---~~~l~~~~~~g-h~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl---sgk~l 560 (630)
++. ...+ .+ |...|.+++|+|++.+|++++.|+.|++|+............ ..|.. .++++
T Consensus 132 ~~~~~~~~~~-----~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-------~~~~~~~~~~~~~ 199 (377)
T 3dwl_C 132 ENDWWVSKHL-----KRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEA-------SVWGSRLPFNTVC 199 (377)
T ss_dssp ---CCCCEEE-----CSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCS-------CSSCSCCCEEEEE
T ss_pred cccceeeeEe-----ecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccc-------cccccccchhhhh
Confidence 763 4443 44 999999999999999999999999997776543111000000 11111 24566
Q ss_pred EEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcE----EEEEe-cCCceEEEE-cCCCcEEEEeccee
Q 006825 561 CSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTC----LKIFS-HSDYDISLV-DRLMLRFAYGAFLN 628 (630)
Q Consensus 561 ~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~----l~t~~-H~~~V~sVa-s~~~~~lAsgs~~n 628 (630)
.++ +|...|++++|+|+ .+|++++.|++|+|||+.++++ +.++. |...|++++ ++++..+++++...
T Consensus 200 ~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 273 (377)
T 3dwl_C 200 AEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYS 273 (377)
T ss_dssp ECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSS
T ss_pred hcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCc
Confidence 677 99999999999999 9999999999999999999987 77777 999999999 88889998886543
No 65
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=1.8e-29 Score=267.72 Aligned_cols=238 Identities=14% Similarity=0.023 Sum_probs=185.7
Q ss_pred eeecCccceeEEEeec-c-----------eEeecCCCccEecccCCCCceeEEec--------CCccCCEEEEEEcCCCC
Q 006825 334 MCVGHSPIVQELMRRQ-N-----------VEEGNKDSFDLNNNGSSGGGMKSKKK--------GSWFKSIRTVASSVTGH 393 (630)
Q Consensus 334 ~l~GHs~~V~~Lafs~-~-----------laSgS~D~tvr~vWD~~tG~~~~~lk--------~gH~~~V~sVAfSpdG~ 393 (630)
.|.+|...|.++++.+ . |++|+.|+++| +|++.++.....+. ..+...+++|+|||||+
T Consensus 68 ~l~~~~~~v~s~~~~~~~~~~g~~~~~~~l~s~~~d~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~ 146 (365)
T 4h5i_A 68 ALEDNDDSPTAIDASKGIILVGCNENSTKITQGKGNKHLR-KFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGT 146 (365)
T ss_dssp ECCTTSCCCCEEEEETTEEEEECCCCHHHHHHTSCCCCEE-EEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSS
T ss_pred EccCCCCceEEEEeCCCEEEEEECCCccEEEEecCCCcEE-EEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCC
Confidence 4678999999999876 3 34456678888 88876654322211 13556689999999998
Q ss_pred eEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEE
Q 006825 394 KERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLAS 473 (630)
Q Consensus 394 ~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LAS 473 (630)
+++. ++++.|++|++||+.+.+ ++.++. |.+.|++|+|+|||++|++
T Consensus 147 ~la~---------------------------as~~~d~~i~iwd~~~~~-----~~~~~~-~~~~V~~v~fspdg~~l~s 193 (365)
T 4h5i_A 147 VAAI---------------------------ASSKVPAIMRIIDPSDLT-----EKFEIE-TRGEVKDLHFSTDGKVVAY 193 (365)
T ss_dssp CEEE---------------------------EESCSSCEEEEEETTTTE-----EEEEEE-CSSCCCEEEECTTSSEEEE
T ss_pred EEEE---------------------------EECCCCCEEEEeECCCCc-----EEEEeC-CCCceEEEEEccCCceEEe
Confidence 8763 466778999999998764 345554 8889999999999999999
Q ss_pred EeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEE
Q 006825 474 AGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVF 553 (630)
Q Consensus 474 gS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vw 553 (630)
++.| .+++|+..++..+.... ..+|...|.+++|+|++.++++++.++...++. .+|
T Consensus 194 ~s~~-~~~~~~~~~~~~~~~~~---~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i-------------------~~~ 250 (365)
T 4h5i_A 194 ITGS-SLEVISTVTGSCIARKT---DFDKNWSLSKINFIADDTVLIAASLKKGKGIVL-------------------TKI 250 (365)
T ss_dssp ECSS-CEEEEETTTCCEEEEEC---CCCTTEEEEEEEEEETTEEEEEEEESSSCCEEE-------------------EEE
T ss_pred ccce-eEEEEEeccCcceeeee---cCCCCCCEEEEEEcCCCCEEEEEecCCcceeEE-------------------eec
Confidence 9855 56677777776554422 467888999999999999999998887321100 455
Q ss_pred eC-CC----CceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe--cCCceEEEE-cCCCcEEEEe
Q 006825 554 AL-SD----KPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYDISLV-DRLMLRFAYG 624 (630)
Q Consensus 554 dl-sg----k~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~--H~~~V~sVa-s~~~~~lAsg 624 (630)
++ .. .....+.+|...|++|+|+|+ ++||+|+.|++|+|||+.++++++++. |...|++|+ +|++.+|+++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~ 330 (365)
T 4h5i_A 251 SIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASV 330 (365)
T ss_dssp EEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEE
T ss_pred ccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEE
Confidence 55 22 234567899999999999999 999999999999999999999999874 999999999 9999999999
Q ss_pred ccee
Q 006825 625 AFLN 628 (630)
Q Consensus 625 s~~n 628 (630)
+.++
T Consensus 331 S~D~ 334 (365)
T 4h5i_A 331 SAAN 334 (365)
T ss_dssp ETTS
T ss_pred eCCC
Confidence 8663
No 66
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.1e-30 Score=288.85 Aligned_cols=266 Identities=8% Similarity=-0.083 Sum_probs=200.9
Q ss_pred eEEEEcCCCceEeeecceeeecCccceeEEEeec---------ceEeecCCCccEecccCCCCce-----------eEEe
Q 006825 316 KKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---------NVEEGNKDSFDLNNNGSSGGGM-----------KSKK 375 (630)
Q Consensus 316 ~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---------~laSgS~D~tvr~vWD~~tG~~-----------~~~l 375 (630)
.++|++.+++.. .....++.+|...|..|+|+| .||+|+.|++|+ +||+.++.. ..++
T Consensus 185 I~iWd~~~~~~~-~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~Dgtvr-lWd~~~~~~~~~~~~~~~~p~~~l 262 (524)
T 2j04_B 185 IQIFKMNTSTLH-CVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTIN-FLEIIDNATDVHVFKMCEKPSLTL 262 (524)
T ss_dssp EEEEEEETTTCC-EEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEE-EEECCCCSSSSSEEECCCSCSEEE
T ss_pred EEEEEccCCCCC-ceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEE-EEEcCCCccccccceeecCceEEE
Confidence 446665555431 111245678899999999997 599999999999 999987753 2466
Q ss_pred cCCccCCEEEEEEcCCCCeEEeecCCC-----C--Cc-----cccCCcceEEEe--ecCCC---eEEEecCCcEEEEEeC
Q 006825 376 KGSWFKSIRTVASSVTGHKERRSSDER-----D--TS-----SEKGGRRSSSAT--DDSQD---VSFHGQERVRVRQYGK 438 (630)
Q Consensus 376 k~gH~~~V~sVAfSpdG~~lasgS~D~-----d--t~-----s~~gh~~~Vsa~--~~s~d---~l~Sgs~Dg~VriWd~ 438 (630)
. +|...|.+|+|++++ +|++|+.|+ + +. .+.+|...|.++ .++++ .+++++.|++|++||+
T Consensus 263 ~-~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~ 340 (524)
T 2j04_B 263 S-LADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNP 340 (524)
T ss_dssp C-CTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECG
T ss_pred E-cCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEEC
Confidence 7 899999999999864 899999987 2 11 267899999998 57775 3899999999999998
Q ss_pred CCCcccceeeeeEecccCc--CEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCC
Q 006825 439 SCKDLTALYKCQEIQAHNG--SIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPT 516 (630)
Q Consensus 439 ~~~el~~~~~v~tL~gHt~--~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~ 516 (630)
...+ ++.++.+|.. .|++|+|+|+++.|++++.|++|+|||+.++.++..+ .+|...|.+|+|+|+++
T Consensus 341 ~~~~-----~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l-----~gH~~~V~sva~Sp~g~ 410 (524)
T 2j04_B 341 KDIA-----TTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPL-----VSRETTITAIGVSRLHP 410 (524)
T ss_dssp GGHH-----HHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEE-----EECSSCEEEEECCSSCC
T ss_pred CCCC-----cccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceee-----ecCCCceEEEEeCCCCC
Confidence 7653 3456777764 5899999999999999999999999999998877764 68999999999999999
Q ss_pred EEEEeeCCCeeeeeccccccc----------------ccccccCccccccEEEe--------CCCCceEEeccCCCCEEE
Q 006825 517 SLSPKHLDNHLEKKRRGRSIN----------------RKSLSLDHMVVPETVFA--------LSDKPICSFQGHLDDVLD 572 (630)
Q Consensus 517 ~lasgs~Dg~I~i~~~~~~~~----------------~~s~s~d~~i~~~~Vwd--------lsgk~l~tL~GHs~~V~s 572 (630)
+|++|+.|++|++|+...... ...++++.... .+|+ .++.++.++.+|...|.+
T Consensus 411 ~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~--~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~ 488 (524)
T 2j04_B 411 MVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKY--RIDSSYEVYPLTVNDVSKAKIDAHGINITC 488 (524)
T ss_dssp BCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEE--EECCCCCCCC-------------CCCSCCC
T ss_pred eEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeE--EccCCceecccccCCcceeeecCCCceEEE
Confidence 999999999999998644211 11122222211 2232 247788899999999999
Q ss_pred EEEcCC-C---eEEEEECCCcEEEEeCCC
Q 006825 573 LSWSKS-Q---HLLSSSMDKTVRLWHLSS 597 (630)
Q Consensus 573 LafSPd-~---~LaSgS~DgtVrIWDl~t 597 (630)
|+|+|+ . +||+|+.||+||||++.-
T Consensus 489 Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 489 TKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp EEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred EECCCCCCccHHHHhhccCceEEEEEccc
Confidence 999998 4 899999999999999863
No 67
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.97 E-value=1e-28 Score=298.03 Aligned_cols=319 Identities=15% Similarity=0.099 Sum_probs=260.5
Q ss_pred ccEEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCC
Q 006825 291 QGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSS 367 (630)
Q Consensus 291 ~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~ 367 (630)
.+..+.--.+|+.+++.. .||. .++|++.+|+.+ .++.+|...|.+++|+| .|++|+.|++++ +||+.
T Consensus 617 ~v~~~~~s~~~~~l~s~~--~d~~-i~vw~~~~~~~~-----~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~-vwd~~ 687 (1249)
T 3sfz_A 617 AVYHACFSQDGQRIASCG--ADKT-LQVFKAETGEKL-----LDIKAHEDEVLCCAFSSDDSYIATCSADKKVK-IWDSA 687 (1249)
T ss_dssp CEEEEEECTTSSEEEEEE--TTSC-EEEEETTTCCEE-----EEECCCSSCEEEEEECTTSSEEEEEETTSEEE-EEETT
T ss_pred cEEEEEECCCCCEEEEEe--CCCe-EEEEECCCCCEE-----EEeccCCCCEEEEEEecCCCEEEEEeCCCeEE-EEECC
Confidence 344555556888777654 3554 779999999988 88899999999999998 799999999999 99999
Q ss_pred CCceeEEecCCccCCEEEEEEcC--CCCeEEeecCCC-------CC----ccccCCcceEEEeecCCCe--EEEecCCcE
Q 006825 368 GGGMKSKKKGSWFKSIRTVASSV--TGHKERRSSDER-------DT----SSEKGGRRSSSATDDSQDV--SFHGQERVR 432 (630)
Q Consensus 368 tG~~~~~lk~gH~~~V~sVAfSp--dG~~lasgS~D~-------dt----~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~ 432 (630)
+|+.+.++. +|...|.+++|+| ++.++++++.|. .+ ....+|...|.++.+++++ +++++.|++
T Consensus 688 ~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~ 766 (1249)
T 3sfz_A 688 TGKLVHTYD-EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGT 766 (1249)
T ss_dssp TCCEEEEEE-CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSE
T ss_pred CCceEEEEc-CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCe
Confidence 999999999 9999999999999 555899999886 12 2267899999999999987 999999999
Q ss_pred EEEEeCCCCcccce-------------------------------------------------eeeeE-ecccCcCEEEE
Q 006825 433 VRQYGKSCKDLTAL-------------------------------------------------YKCQE-IQAHNGSIWSI 462 (630)
Q Consensus 433 VriWd~~~~el~~~-------------------------------------------------~~v~t-L~gHt~~V~sV 462 (630)
|++||+..++.... ..+.. ..+|...|.++
T Consensus 767 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~ 846 (1249)
T 3sfz_A 767 LRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYC 846 (1249)
T ss_dssp EEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEE
T ss_pred EEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEE
Confidence 99999865431100 01111 23899999999
Q ss_pred EEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccc------
Q 006825 463 KFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSI------ 536 (630)
Q Consensus 463 aFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~------ 536 (630)
+|+|+++++++++.|++|++||+.++..+..+ .+|...|.+++|+|++.++++++.|+.|++|+.....
T Consensus 847 ~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~-----~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~ 921 (1249)
T 3sfz_A 847 DFSPYDHLAVIALSQYCVELWNIDSRLKVADC-----RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIV 921 (1249)
T ss_dssp EECSSTTEEEEECSSSCEEEEETTTTEEEEEE-----CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSS
T ss_pred EEcCCCCEEEEEeCCCeEEEEEcCCCceeeec-----CCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeec
Confidence 99999999999999999999999998887774 7999999999999999999999999999999854210
Q ss_pred -------------------------------------------cccccccCcccc-------ccEEEeC-CCCceEEecc
Q 006825 537 -------------------------------------------NRKSLSLDHMVV-------PETVFAL-SDKPICSFQG 565 (630)
Q Consensus 537 -------------------------------------------~~~s~s~d~~i~-------~~~Vwdl-sgk~l~tL~G 565 (630)
....++++.... ...+|++ +++.+..+.+
T Consensus 922 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~ 1001 (1249)
T 3sfz_A 922 LKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVG 1001 (1249)
T ss_dssp EEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCC
T ss_pred ccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeeccc
Confidence 001111211111 1178998 7888999999
Q ss_pred CCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEecCCceEEEE-cCCCcEEEEe
Q 006825 566 HLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYDISLV-DRLMLRFAYG 624 (630)
Q Consensus 566 Hs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~H~~~V~sVa-s~~~~~lAsg 624 (630)
|...|++++|+|+ .+|++++.|++|++||+.+++++....|...|.+++ .+....++.+
T Consensus 1002 h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~ 1062 (1249)
T 3sfz_A 1002 HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWS 1062 (1249)
T ss_dssp CSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEE
T ss_pred CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEE
Confidence 9999999999999 999999999999999999999886666999999999 6655544443
No 68
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.1e-30 Score=274.66 Aligned_cols=290 Identities=11% Similarity=0.040 Sum_probs=212.3
Q ss_pred CCceEeeecceee-ecCccceeEEEeec----ceEeecCCCccEecccCCC---CceeE-EecCCccCCEEEEEEcCCCC
Q 006825 323 TGRQLTIEEFEMC-VGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSG---GGMKS-KKKGSWFKSIRTVASSVTGH 393 (630)
Q Consensus 323 TG~~lt~eef~~l-~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~t---G~~~~-~lk~gH~~~V~sVAfSpdG~ 393 (630)
+|+.+ ..+ .||...|.+|+|+| .|++|+.|++|+ +||+.+ +.... .+..+|...|.+|+|+|+++
T Consensus 51 ~g~~~-----~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~-vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 124 (437)
T 3gre_A 51 RGKLI-----ATLMENEPNSITSSAVSPGETPYLITGSDQGVIK-IWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFD 124 (437)
T ss_dssp CCCEE-----EEECTTTTSCEEEEEEECSSSCEEEEEETTSEEE-EEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSS
T ss_pred cceEE-----eeeccCCCCceEEEEECCCCCCEEEEecCCceEE-EeECcccccCcccceeeeccCCCCEEEEEEeCCCC
Confidence 45666 666 89999999999999 699999999999 999877 54221 22236999999999999999
Q ss_pred eEEeecCCC-----CCc-----c----ccC------------CcceEEEee--cCCCe--EEEecCCcEEEEEeCCCCcc
Q 006825 394 KERRSSDER-----DTS-----S----EKG------------GRRSSSATD--DSQDV--SFHGQERVRVRQYGKSCKDL 443 (630)
Q Consensus 394 ~lasgS~D~-----dt~-----s----~~g------------h~~~Vsa~~--~s~d~--l~Sgs~Dg~VriWd~~~~el 443 (630)
++++++.|+ +.. . ..+ +...+.++. +.+++ +++++.|++|++||+.+++
T Consensus 125 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~- 203 (437)
T 3gre_A 125 AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLE- 203 (437)
T ss_dssp EEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCC-
T ss_pred EEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe-
Confidence 999999987 211 0 111 223333333 33343 8999999999999998764
Q ss_pred cceeeeeEecc--cCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEEC----CCCCE
Q 006825 444 TALYKCQEIQA--HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGS----PEPTS 517 (630)
Q Consensus 444 ~~~~~v~tL~g--Ht~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafS----pdg~~ 517 (630)
++..+.+ |.+.|++++|+|++++|++|+.|++|+|||+.+++.+..+ ..+|...|.+++++ |++.+
T Consensus 204 ----~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~~~~~v~~~~~~~~~s~~~~~ 275 (437)
T 3gre_A 204 ----RLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSW----SFGDHAPITHVEVCQFYGKNSVI 275 (437)
T ss_dssp ----EEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEE----BCTTCEEEEEEEECTTTCTTEEE
T ss_pred ----eeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEE----ecCCCCceEEEEeccccCCCccE
Confidence 4677888 8999999999999999999999999999999998887775 23677789999554 56889
Q ss_pred EEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCce--EEecc--CCCCEEEEEEcCCCeEEEEECCCcEEEE
Q 006825 518 LSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPI--CSFQG--HLDDVLDLSWSKSQHLLSSSMDKTVRLW 593 (630)
Q Consensus 518 lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l--~tL~G--Hs~~V~sLafSPd~~LaSgS~DgtVrIW 593 (630)
+++++.|+.|++|+.........+...........|...++.+ .++.+ |...|++++|++..+|++|+.|++|++|
T Consensus 276 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~w 355 (437)
T 3gre_A 276 VVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMF 355 (437)
T ss_dssp EEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEE
T ss_pred EEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEECCceEEEecCCCCeEEEE
Confidence 9999999999777765432222211111000000111111111 12445 8888999999944899999999999999
Q ss_pred eCCCCcEEEEEe--------------------------------------cCCceEEEE-cCC--CcEEEEecce
Q 006825 594 HLSSKTCLKIFS--------------------------------------HSDYDISLV-DRL--MLRFAYGAFL 627 (630)
Q Consensus 594 Dl~tg~~l~t~~--------------------------------------H~~~V~sVa-s~~--~~~lAsgs~~ 627 (630)
|+.+++++..+. |.+.|++|+ .+. ...+++++.+
T Consensus 356 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~d 430 (437)
T 3gre_A 356 SLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNS 430 (437)
T ss_dssp ETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETT
T ss_pred ECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCC
Confidence 999998777665 789999999 443 6677777543
No 69
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.97 E-value=7.5e-29 Score=266.96 Aligned_cols=260 Identities=16% Similarity=0.164 Sum_probs=225.5
Q ss_pred eeeecCccc-eeEEEeec-ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-------C
Q 006825 333 EMCVGHSPI-VQELMRRQ-NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-------D 403 (630)
Q Consensus 333 ~~l~GHs~~-V~~Lafs~-~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-------d 403 (630)
..+.||... +.++.|.+ .+++|+.|++|+ +||+.+++.+.++. +|...|.+++|++++ ++++++.|+ +
T Consensus 115 ~~l~~h~~~v~~~~~~~~~~l~sgs~dg~i~-vwd~~~~~~~~~~~-~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~ 191 (464)
T 3v7d_B 115 TTLRGHMTSVITCLQFEDNYVITGADDKMIR-VYDSINKKFLLQLS-GHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIK 191 (464)
T ss_dssp EEEECCSSSCEEEEEEETTEEEEEETTSCEE-EEETTTTEEEEEEC-CCSSCEEEEEECSTT-EEEEEETTSCEEEEETT
T ss_pred EEEcCCCCCcEEEEEECCCEEEEEcCCCcEE-EEECCCCcEEEEEe-CCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECC
Confidence 567899877 47788877 899999999999 99999999999999 999999999999998 899999887 2
Q ss_pred C----ccccCCcceEEEeecC--CCe--EEEecCCcEEEEEeCCCCcccce------------------eeeeEecccCc
Q 006825 404 T----SSEKGGRRSSSATDDS--QDV--SFHGQERVRVRQYGKSCKDLTAL------------------YKCQEIQAHNG 457 (630)
Q Consensus 404 t----~s~~gh~~~Vsa~~~s--~d~--l~Sgs~Dg~VriWd~~~~el~~~------------------~~v~tL~gHt~ 457 (630)
+ ..+.+|...|.++++. +++ +++++.|++|++|++........ ..+..+.+|..
T Consensus 192 ~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (464)
T 3v7d_B 192 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA 271 (464)
T ss_dssp TTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSS
T ss_pred CCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccc
Confidence 2 2267899999999887 343 99999999999999986642211 13567899999
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccccccc
Q 006825 458 SIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSIN 537 (630)
Q Consensus 458 ~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~ 537 (630)
.|.++ ++++++|++|+.|++|++||+.+++.+..+ .+|...|.+++|+|++.++++++.|+.|
T Consensus 272 ~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~sg~~dg~i---------- 334 (464)
T 3v7d_B 272 SVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYIL-----SGHTDRIYSTIYDHERKRCISASMDTTI---------- 334 (464)
T ss_dssp CEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEE-----CCCSSCEEEEEEETTTTEEEEEETTSCE----------
T ss_pred eEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEe-----cCCCCCEEEEEEcCCCCEEEEEeCCCcE----------
Confidence 99988 568999999999999999999999888774 7899999999999999999999999999
Q ss_pred ccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEecCCceEEEE-c
Q 006825 538 RKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYDISLV-D 615 (630)
Q Consensus 538 ~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~l~t~~H~~~V~sVa-s 615 (630)
++|++ +++++.++.+|...|.+++|++ .+|++++.|++|++||+.+++....+.|...+..++ .
T Consensus 335 -------------~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 400 (464)
T 3v7d_B 335 -------------RIWDLENGELMYTLQGHTALVGLLRLSD-KFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFY 400 (464)
T ss_dssp -------------EEEETTTTEEEEEECCCSSCEEEEEECS-SEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEE
T ss_pred -------------EEEECCCCcEEEEEeCCCCcEEEEEEcC-CEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEE
Confidence 88888 7899999999999999999986 899999999999999999999888887777777777 7
Q ss_pred CCCcEEEEecc
Q 006825 616 RLMLRFAYGAF 626 (630)
Q Consensus 616 ~~~~~lAsgs~ 626 (630)
+.+..+++++.
T Consensus 401 ~~~~~l~~~~d 411 (464)
T 3v7d_B 401 VSDNILVSGSE 411 (464)
T ss_dssp ECSSEEEEEET
T ss_pred eCCCEEEEecC
Confidence 77778887763
No 70
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.97 E-value=1.9e-29 Score=263.16 Aligned_cols=274 Identities=17% Similarity=0.101 Sum_probs=211.5
Q ss_pred EEEcCCCceEeeecceeeecCccceeEEEeec----ceEeecCCCccEecccCCCCceeEEec------------CCccC
Q 006825 318 VKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGMKSKKK------------GSWFK 381 (630)
Q Consensus 318 l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~~~~lk------------~gH~~ 381 (630)
+|+..+++.. ..+.+|...|.+|+|+| .|++|+.|++++ +||+.++.....+. .+|..
T Consensus 27 v~~~~~~~~~-----~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~-iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (408)
T 4a11_B 27 VLGLELNKDR-----DVERIHGGGINTLDIEPVEGRYMLSGGSDGVIV-LYDLENSSRQSYYTCKAVCSIGRDHPDVHRY 100 (408)
T ss_dssp HHTEEECTTE-----EECCCCSSCEEEEEECTTTCCEEEEEETTSCEE-EEECCCCSSSSCEEECEEEEECTTCTTCCSS
T ss_pred eeccccCcce-----eeeeccCCcEEEEEEecCCCCEEEEEcCCCeEE-EEECCCCcccceEeccccccccccccccCCC
Confidence 4555555555 67789999999999997 699999999999 99999987665543 26999
Q ss_pred CEEEEEEcC-CCCeEEeecCCC-----C--Ccc---ccCCcceEEEeecCC---C--eEEEecCCcEEEEEeCCCCcccc
Q 006825 382 SIRTVASSV-TGHKERRSSDER-----D--TSS---EKGGRRSSSATDDSQ---D--VSFHGQERVRVRQYGKSCKDLTA 445 (630)
Q Consensus 382 ~V~sVAfSp-dG~~lasgS~D~-----d--t~s---~~gh~~~Vsa~~~s~---d--~l~Sgs~Dg~VriWd~~~~el~~ 445 (630)
.|.+++|+| ++.++++++.|+ + +.. ...+...+.++.+.+ + .+++++.++.|++||+..++
T Consensus 101 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~--- 177 (408)
T 4a11_B 101 SVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS--- 177 (408)
T ss_dssp CEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC---
T ss_pred cEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc---
Confidence 999999999 788999999887 1 111 222444445554443 3 48999999999999998764
Q ss_pred eeeeeEecccCcCEEEEEEccCCC-EEEEEeCCCcEEEEECcCCceeeeee-----------cccccCcccceEEEEECC
Q 006825 446 LYKCQEIQAHNGSIWSIKFSLDGR-YLASAGEDCVIHVWQVVESERKGELL-----------EKQEDGHLNMLLLANGSP 513 (630)
Q Consensus 446 ~~~v~tL~gHt~~V~sVaFSpDG~-~LASgS~DgtIrVWDl~tg~~~~~l~-----------~~~~~gh~~~V~svafSp 513 (630)
.+..+.+|...|.+++|+|+++ +|++|+.|+.|++||+.++......+ .....+|...|.+++|+|
T Consensus 178 --~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 255 (408)
T 4a11_B 178 --CSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS 255 (408)
T ss_dssp --CCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT
T ss_pred --eeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC
Confidence 4677899999999999999998 69999999999999998765222211 111257889999999999
Q ss_pred CCCEEEEeeCCCeeeeecccccccccc---------------------------cccCccccccEEEeC-CCCceEEecc
Q 006825 514 EPTSLSPKHLDNHLEKKRRGRSINRKS---------------------------LSLDHMVVPETVFAL-SDKPICSFQG 565 (630)
Q Consensus 514 dg~~lasgs~Dg~I~i~~~~~~~~~~s---------------------------~s~d~~i~~~~Vwdl-sgk~l~tL~G 565 (630)
++.++++++.|+.|++|+......... ...++.+ .+|++ +++++..+.+
T Consensus 256 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i---~v~d~~~~~~~~~~~~ 332 (408)
T 4a11_B 256 DGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTI---AVYTVYSGEQITMLKG 332 (408)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEE---EEEETTTCCEEEEECC
T ss_pred CCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEE---EEEECcCCcceeeecc
Confidence 999999999999999999765322110 1112222 78998 8899999999
Q ss_pred CCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825 566 HLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS 605 (630)
Q Consensus 566 Hs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~ 605 (630)
|...|++++|+|+ .+|++++.||+|+|||+.+++++....
T Consensus 333 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 373 (408)
T 4a11_B 333 HYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDD 373 (408)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSCEEEEEECC--------
T ss_pred CCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCC
Confidence 9999999999999 999999999999999999998887665
No 71
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.97 E-value=3.6e-29 Score=258.84 Aligned_cols=262 Identities=8% Similarity=-0.054 Sum_probs=219.9
Q ss_pred eeecCccceeEEEeec---ceEeecCCCccEecccCCCCc--eeEEecCCccCCEEEEEEcCCCCeEEeecCCC-----C
Q 006825 334 MCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGG--MKSKKKGSWFKSIRTVASSVTGHKERRSSDER-----D 403 (630)
Q Consensus 334 ~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~--~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-----d 403 (630)
.+..|...|.+++|+| .|++|+.|++++ +||+.+++ .+.++. +|...|.+++|+|+|+++++++.|+ +
T Consensus 3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~-i~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 80 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVH-IYEKSGNKWVQVHELK-EHNGQVTGVDWAPDSNRIVTCGTDRNAYVWT 80 (372)
T ss_dssp EEESCSSCCCEEEECTTSSEEEEECSSSEEE-EEEEETTEEEEEEEEE-CCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred eecccCCCeEEEEECCCCCEEEEEeCCCEEE-EEeCCCCcEEeeeeec-CCCCcccEEEEeCCCCEEEEEcCCCeEEEEE
Confidence 3456999999999998 799999999999 99999998 888888 9999999999999999999999887 1
Q ss_pred --Cc------cccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEE
Q 006825 404 --TS------SEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLAS 473 (630)
Q Consensus 404 --t~------s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LAS 473 (630)
+. ...+|...|.++.+++++ +++++.|+.|++|+....+... .......+|...|.+++|+|++++|++
T Consensus 81 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~ 159 (372)
T 1k8k_C 81 LKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWW-VCKHIKKPIRSTVLSLDWHPNSVLLAA 159 (372)
T ss_dssp EETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEE-EEEEECTTCCSCEEEEEECTTSSEEEE
T ss_pred CCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcce-eeeeeecccCCCeeEEEEcCCCCEEEE
Confidence 11 147788999999999887 8999999999999987664211 122334789999999999999999999
Q ss_pred EeCCCcEEEEECc------------------CCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccccc
Q 006825 474 AGEDCVIHVWQVV------------------ESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRS 535 (630)
Q Consensus 474 gS~DgtIrVWDl~------------------tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~ 535 (630)
++.|++|++||+. .++.+.. +.+|...|.+++|+|++.+|++++.|+.|
T Consensus 160 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~d~~i-------- 226 (372)
T 1k8k_C 160 GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFE-----SSSSCGWVHGVCFSANGSRVAWVSHDSTV-------- 226 (372)
T ss_dssp EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEE-----CCCCSSCEEEEEECSSSSEEEEEETTTEE--------
T ss_pred EcCCCCEEEEEcccccccccccccccccccchhhheEe-----cCCCCCeEEEEEECCCCCEEEEEeCCCEE--------
Confidence 9999999999964 4555555 36889999999999999999999999999
Q ss_pred ccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCC--CcE-----------
Q 006825 536 INRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSS--KTC----------- 600 (630)
Q Consensus 536 ~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~t--g~~----------- 600 (630)
++|++ +++++..+.+|...|++++|+|+ .+|++| .|+.|+||++.+ ++.
T Consensus 227 ---------------~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~ 290 (372)
T 1k8k_C 227 ---------------CLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQ 290 (372)
T ss_dssp ---------------EEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--
T ss_pred ---------------EEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCcccc
Confidence 88888 78899999999999999999999 555555 999999999988 421
Q ss_pred ---------------------E------EEE--ecCCceEEEE--cCCC---cEEEEecce
Q 006825 601 ---------------------L------KIF--SHSDYDISLV--DRLM---LRFAYGAFL 627 (630)
Q Consensus 601 ---------------------l------~t~--~H~~~V~sVa--s~~~---~~lAsgs~~ 627 (630)
. ..+ .|...|++++ .+++ ..+++++.+
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~D 351 (372)
T 1k8k_C 291 SSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMD 351 (372)
T ss_dssp ------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETT
T ss_pred chhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCC
Confidence 0 223 2999999998 4665 788888754
No 72
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.97 E-value=6.8e-29 Score=254.81 Aligned_cols=270 Identities=13% Similarity=0.065 Sum_probs=204.4
Q ss_pred eEEEEcCCCceEeeecceeeecCccceeEEEeec------ceEeecCCCccEecccCCCCc-eeEEecCCccCCEEEEE-
Q 006825 316 KKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ------NVEEGNKDSFDLNNNGSSGGG-MKSKKKGSWFKSIRTVA- 387 (630)
Q Consensus 316 ~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~------~laSgS~D~tvr~vWD~~tG~-~~~~lk~gH~~~V~sVA- 387 (630)
.++|++.+++... ....+|...|.+++|+| .|++|+.|++++ +||+.+++ .+..++ +|...|.+++
T Consensus 46 v~iw~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~-iwd~~~~~~~~~~~~-~~~~~v~~~~~ 119 (357)
T 3i2n_A 46 IQLYEIQHGDLKL----LREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLH-IWNLEAPEMPVYSVK-GHKEIINAIDG 119 (357)
T ss_dssp EEEEEECSSSEEE----EEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEE-EECTTSCSSCSEEEC-CCSSCEEEEEE
T ss_pred EEEEeCCCCcccc----eeeecccCcEEEEEEcCCCCCCceEEEecCCCeEE-EEeCCCCCccEEEEE-ecccceEEEee
Confidence 5577777766551 12347899999999986 499999999999 99999998 888888 9999999994
Q ss_pred -----EcCCCCeEEeecCCC-----CCcc-------ccCC----cceEEEee----cCCCe--EEEecCCcEEEEEeCCC
Q 006825 388 -----SSVTGHKERRSSDER-----DTSS-------EKGG----RRSSSATD----DSQDV--SFHGQERVRVRQYGKSC 440 (630)
Q Consensus 388 -----fSpdG~~lasgS~D~-----dt~s-------~~gh----~~~Vsa~~----~s~d~--l~Sgs~Dg~VriWd~~~ 440 (630)
|+|+|+++++++.|+ +... ...| ...+.++. +++++ +++++.|+.|++||+..
T Consensus 120 ~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 199 (357)
T 3i2n_A 120 IGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRN 199 (357)
T ss_dssp ESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTT
T ss_pred ccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECcc
Confidence 578999999999887 1111 2222 33677776 55665 89999999999999987
Q ss_pred CcccceeeeeEecccCcCEEEEEEcc---CCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCC-
Q 006825 441 KDLTALYKCQEIQAHNGSIWSIKFSL---DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPT- 516 (630)
Q Consensus 441 ~el~~~~~v~tL~gHt~~V~sVaFSp---DG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~- 516 (630)
.+. .....|...|.+++|+| ++.+|++++.|+.|++||+.+++....+......+|...|.+++|+|++.
T Consensus 200 ~~~------~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 273 (357)
T 3i2n_A 200 MAL------RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRE 273 (357)
T ss_dssp TEE------EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEE
T ss_pred Cce------eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCc
Confidence 642 34577999999999999 99999999999999999998877665542222348999999999999998
Q ss_pred EEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEE-EEECCCcEEEEe
Q 006825 517 SLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLL-SSSMDKTVRLWH 594 (630)
Q Consensus 517 ~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~La-SgS~DgtVrIWD 594 (630)
++++++.|+.|++|+............+..... ...+.+++.++.+|...|++++|+|+ .+|+ +++.|++|+|||
T Consensus 274 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~ 350 (357)
T 3i2n_A 274 LFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMG---VAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLI 350 (357)
T ss_dssp EEEEEETTSEEEEEEEECCSCC--CCTTSCCCC---CCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred EEEEEeCCCcEEEeecCCCcccccccCCCCccc---cccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEE
Confidence 899999999997777654322211111111100 00011567889999999999999999 7787 899999999999
Q ss_pred CCCCcE
Q 006825 595 LSSKTC 600 (630)
Q Consensus 595 l~tg~~ 600 (630)
+.+.+.
T Consensus 351 ~~~~~~ 356 (357)
T 3i2n_A 351 VTKLNK 356 (357)
T ss_dssp ECC---
T ss_pred CCCccc
Confidence 987654
No 73
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.97 E-value=1e-28 Score=261.06 Aligned_cols=258 Identities=11% Similarity=0.062 Sum_probs=209.2
Q ss_pred CCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEec
Q 006825 300 NGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKK 376 (630)
Q Consensus 300 dG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk 376 (630)
+|+.+++... || ..++|+..+++.+ ..+.+| ..+...+|++ .|++|+.|++++ +||+.+++.+..++
T Consensus 67 ~g~~l~~~~~--d~-~v~i~d~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~-iwd~~~~~~~~~~~ 136 (420)
T 3vl1_A 67 VGSHLYKARL--DG-HDFLFNTIIRDGS-----KMLKRA-DYTAVDTAKLQMRRFILGTTEGDIK-VLDSNFNLQREIDQ 136 (420)
T ss_dssp EETTEEEEEE--TT-EEEEEECCSEETT-----TTSCSC-CEEEEEEECSSSCEEEEEETTSCEE-EECTTSCEEEEETT
T ss_pred cCCeEEEEEc--CC-cEEEEEeccccee-----eEEecC-CceEEEEEecCCCEEEEEECCCCEE-EEeCCCcceeeecc
Confidence 4555665444 44 3679999887766 556666 5555566776 799999999999 99999999988887
Q ss_pred CCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccC
Q 006825 377 GSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHN 456 (630)
Q Consensus 377 ~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt 456 (630)
+|...|.+++|+|+|++++ +++.|++|++||+..++ .++.+.+|.
T Consensus 137 -~h~~~v~~~~~~~~~~~l~-----------------------------s~s~d~~i~iwd~~~~~-----~~~~~~~h~ 181 (420)
T 3vl1_A 137 -AHVSEITKLKFFPSGEALI-----------------------------SSSQDMQLKIWSVKDGS-----NPRTLIGHR 181 (420)
T ss_dssp -SSSSCEEEEEECTTSSEEE-----------------------------EEETTSEEEEEETTTCC-----CCEEEECCS
T ss_pred -cccCccEEEEECCCCCEEE-----------------------------EEeCCCeEEEEeCCCCc-----CceEEcCCC
Confidence 9999999999999988774 55677899999998765 467889999
Q ss_pred cCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccc---------------------eEEEEECCCC
Q 006825 457 GSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNM---------------------LLLANGSPEP 515 (630)
Q Consensus 457 ~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~---------------------V~svafSpdg 515 (630)
..|++++|+|++++|++++.|++|++||+.+++.+..+.. ...|... +..++|+|++
T Consensus 182 ~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 259 (420)
T 3vl1_A 182 ATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNR--KENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYG 259 (420)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECB--TTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTT
T ss_pred CcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeec--CCCCCCCccEEEEecCCcceeeecccCcccceEEcCCC
Confidence 9999999999999999999999999999999988777521 1233333 4445568999
Q ss_pred CEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEe-ccCCCCEEEEEEcCC-C-eEEEEECCCcEE
Q 006825 516 TSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSF-QGHLDDVLDLSWSKS-Q-HLLSSSMDKTVR 591 (630)
Q Consensus 516 ~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL-~GHs~~V~sLafSPd-~-~LaSgS~DgtVr 591 (630)
.++++++.|+.| ++|++ +++.+..+ .+|...|++++|+|+ . +|++|+.|++|+
T Consensus 260 ~~l~~~~~dg~i-----------------------~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~ 316 (420)
T 3vl1_A 260 KYVIAGHVSGVI-----------------------TVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLA 316 (420)
T ss_dssp EEEEEEETTSCE-----------------------EEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred CEEEEEcCCCeE-----------------------EEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEE
Confidence 999999999999 78887 56666665 458899999999999 6 999999999999
Q ss_pred EEeCCCCcE-EEEEe--cCCceEEEEcCCCcEEEEecce
Q 006825 592 LWHLSSKTC-LKIFS--HSDYDISLVDRLMLRFAYGAFL 627 (630)
Q Consensus 592 IWDl~tg~~-l~t~~--H~~~V~sVas~~~~~lAsgs~~ 627 (630)
|||+.++++ +..+. |...|+++..+.+..+++++.+
T Consensus 317 vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d 355 (420)
T 3vl1_A 317 QWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFD 355 (420)
T ss_dssp EEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTT
T ss_pred EEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCC
Confidence 999999754 66676 7888999986667788888654
No 74
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=1.7e-29 Score=268.87 Aligned_cols=257 Identities=11% Similarity=0.110 Sum_probs=211.9
Q ss_pred ecCccceeEEEeec---ceEeecCCCccEecccCCCCc-----------eeEEecCCcc------------CCEEEEEEc
Q 006825 336 VGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGG-----------MKSKKKGSWF------------KSIRTVASS 389 (630)
Q Consensus 336 ~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~-----------~~~~lk~gH~------------~~V~sVAfS 389 (630)
..|...|.+|+|+| .||+|+.|++|+ +||+.+++ ....++ +|. ..|.+|+|+
T Consensus 25 ~~~~~~V~~v~~s~~g~~la~g~~dg~v~-iw~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~~~~~~V~~l~~~ 102 (447)
T 3dw8_B 25 VAEADIISTVEFNHSGELLATGDKGGRVV-IFQQEQENKIQSHSRGEYNVYSTFQ-SHEPEFDYLKSLEIEEKINKIRWL 102 (447)
T ss_dssp CCGGGSEEEEEECSSSSEEEEEETTSEEE-EEEECC-----CCCCCCEEEEEEEE-CCCCEEEGGGTEEECCCCCEEEEC
T ss_pred ccccCcEEEEEECCCCCEEEEEcCCCeEE-EEEecCCCCCCcccccceeEecccc-cccccccccccccccCceEEEEEc
Confidence 45789999999999 799999999999 99999887 577888 898 889999999
Q ss_pred CCC--CeEEeecCCC-----CCcc----------------------------------------------ccCCcceEEE
Q 006825 390 VTG--HKERRSSDER-----DTSS----------------------------------------------EKGGRRSSSA 416 (630)
Q Consensus 390 pdG--~~lasgS~D~-----dt~s----------------------------------------------~~gh~~~Vsa 416 (630)
|++ .++++++.|+ +... ..+|...|.+
T Consensus 103 ~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 182 (447)
T 3dw8_B 103 PQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINS 182 (447)
T ss_dssp CCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCE
T ss_pred CCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEE
Confidence 998 7899999887 1110 3689999999
Q ss_pred eecCCCe--EEEecCCcEEEEEeCCCCcccceeeee-------EecccCcCEEEEEEccCC-CEEEEEeCCCcEEEEECc
Q 006825 417 TDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQ-------EIQAHNGSIWSIKFSLDG-RYLASAGEDCVIHVWQVV 486 (630)
Q Consensus 417 ~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~-------tL~gHt~~V~sVaFSpDG-~~LASgS~DgtIrVWDl~ 486 (630)
+++++++ +++| .|++|++||+..... .+. .+.+|...|++++|+|++ ++|++|+.|++|+|||+.
T Consensus 183 ~~~~~~~~~l~s~-~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~ 257 (447)
T 3dw8_B 183 ISINSDYETYLSA-DDLRINLWHLEITDR----SFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMR 257 (447)
T ss_dssp EEECTTSSEEEEE-CSSEEEEEETTEEEE----EEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred EEEcCCCCEEEEe-CCCeEEEEECCCCCc----eeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECc
Confidence 9999987 7787 899999999973321 222 467999999999999998 999999999999999999
Q ss_pred CCce----eeeeecccccCccc------------ceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCcccccc
Q 006825 487 ESER----KGELLEKQEDGHLN------------MLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPE 550 (630)
Q Consensus 487 tg~~----~~~l~~~~~~gh~~------------~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~ 550 (630)
++.. ...+ .+|.. .|.+++|+|++++|++++. +.|
T Consensus 258 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v----------------------- 308 (447)
T 3dw8_B 258 ASALCDRHSKLF-----EEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSV----------------------- 308 (447)
T ss_dssp TCSSSCTTCEEE-----CCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEE-----------------------
T ss_pred CCccccceeeEe-----ccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeE-----------------------
Confidence 8875 3443 55554 8999999999999999988 999
Q ss_pred EEEeC-C-CCceEEeccCCCC---------------EEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-------
Q 006825 551 TVFAL-S-DKPICSFQGHLDD---------------VLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS------- 605 (630)
Q Consensus 551 ~Vwdl-s-gk~l~tL~GHs~~---------------V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~------- 605 (630)
++|++ . ++++.++.+|... +..++|+|+ .+|++|+.|++|+|||+.+++++....
T Consensus 309 ~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~ 388 (447)
T 3dw8_B 309 KVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKP 388 (447)
T ss_dssp EEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCT
T ss_pred EEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeeccccccc
Confidence 78887 3 7788888888642 334999999 999999999999999999998875221
Q ss_pred --------------------------cCCceEEEE-cCCCcEEEEeccee
Q 006825 606 --------------------------HSDYDISLV-DRLMLRFAYGAFLN 628 (630)
Q Consensus 606 --------------------------H~~~V~sVa-s~~~~~lAsgs~~n 628 (630)
+...|.+++ +|.+..||+++..+
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~ 438 (447)
T 3dw8_B 389 RTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN 438 (447)
T ss_dssp TCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC
T ss_pred ccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce
Confidence 245688889 99999999987654
No 75
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.97 E-value=1.8e-29 Score=272.20 Aligned_cols=267 Identities=11% Similarity=0.048 Sum_probs=192.9
Q ss_pred eEEEEcCCCceEeeecceeeecCccceeEEEeec----ceEeecCCCccEecccCCCCceeEEec-CCccCCEEEEEEcC
Q 006825 316 KKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGMKSKKK-GSWFKSIRTVASSV 390 (630)
Q Consensus 316 ~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~~~~lk-~gH~~~V~sVAfSp 390 (630)
.++|++.+++.. .+..+.||...|.+|+|+| .|+|||.|++|+ +||+.++....... ..+...|.+++|+|
T Consensus 144 i~lWd~~~~~~~---~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~-iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (435)
T 4e54_B 144 IMLWNFGIKDKP---TFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTR-LQDFKGNILRVFASSDTINIWFCSLDVSA 219 (435)
T ss_dssp EEEECSSCCSCC---EEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEE-EEETTSCEEEEEECCSSCSCCCCCEEEET
T ss_pred EEEEECCCCCce---eEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEE-EeeccCCceeEEeccCCCCccEEEEEECC
Confidence 345555444332 1245679999999999997 699999999999 99998765544333 13445678999999
Q ss_pred CCCeEEeecCCC----------CCccccCCcceEEEeecCCCe---EEEecCCcEEEEEeCCCCcccceeeeeEecccCc
Q 006825 391 TGHKERRSSDER----------DTSSEKGGRRSSSATDDSQDV---SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNG 457 (630)
Q Consensus 391 dG~~lasgS~D~----------dt~s~~gh~~~Vsa~~~s~d~---l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~ 457 (630)
+|+++++|+.|+ ....+.+|...|.++.|++++ +++++.|++|++||+...+... ......+|..
T Consensus 220 ~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~--~~~~~~~h~~ 297 (435)
T 4e54_B 220 SSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKA--SFLYSLPHRH 297 (435)
T ss_dssp TTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSS--CCSBCCBCSS
T ss_pred CCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccc--eEEEeeeccc
Confidence 999999999887 123478899999999998765 7899999999999987654321 2234578999
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccc-cCcccceEEEEECCCCCEEEEee-CCCeeeeeccccc
Q 006825 458 SIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQE-DGHLNMLLLANGSPEPTSLSPKH-LDNHLEKKRRGRS 535 (630)
Q Consensus 458 ~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~-~gh~~~V~svafSpdg~~lasgs-~Dg~I~i~~~~~~ 535 (630)
.|++|+|+|+|++|+|++.|++|+|||+.++.....+..... ......+..+.|+|++.++++++ .++.+.++.
T Consensus 298 ~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---- 373 (435)
T 4e54_B 298 PVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCT---- 373 (435)
T ss_dssp CEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSS----
T ss_pred cccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEE----
Confidence 999999999999999999999999999999887766531110 01111234567788877777654 333332111
Q ss_pred ccccccccCccccccEEEeC-CCCceEEec-cCCCCEEEE-EEcCC-CeEEEEECCCcEEEEeCCCCcEE
Q 006825 536 INRKSLSLDHMVVPETVFAL-SDKPICSFQ-GHLDDVLDL-SWSKS-QHLLSSSMDKTVRLWHLSSKTCL 601 (630)
Q Consensus 536 ~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~-GHs~~V~sL-afSPd-~~LaSgS~DgtVrIWDl~tg~~l 601 (630)
...+..+ ++|+. +++.+.++. +|...|.++ +|+|+ .+|++|+ |++|+||++++++..
T Consensus 374 -----~~~~~~i---~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 374 -----PYELRTI---DVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp -----TTCCCCE---EEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred -----ecCCCEE---EEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence 1112223 89998 788888875 688899887 69999 7888765 889999999998764
No 76
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.97 E-value=3.4e-28 Score=268.51 Aligned_cols=248 Identities=17% Similarity=0.167 Sum_probs=214.4
Q ss_pred eeeecCccc-eeEEEeec-----ceEeecCCCccEecccCCCC--------ceeEEecCCccCCEEEEEEcCCCCeEEee
Q 006825 333 EMCVGHSPI-VQELMRRQ-----NVEEGNKDSFDLNNNGSSGG--------GMKSKKKGSWFKSIRTVASSVTGHKERRS 398 (630)
Q Consensus 333 ~~l~GHs~~-V~~Lafs~-----~laSgS~D~tvr~vWD~~tG--------~~~~~lk~gH~~~V~sVAfSpdG~~lasg 398 (630)
..+.+|... |.+++|+| .|++|+.|++++ +||+.++ ..+.++. +|...|.+++|+|+|++++++
T Consensus 57 ~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~-vw~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~ 134 (615)
T 1pgu_A 57 VQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVI-VWGWTFDKESNSVEVNVKSEFQ-VLAGPISDISWDFEGRRLCVV 134 (615)
T ss_dssp EEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEE-EEEEEEEGGGTEEEEEEEEEEE-CCSSCEEEEEECTTSSEEEEE
T ss_pred eEEecCCCceEEEEEECcCCCCCEEEEecCCCEEE-EEeCCCCcccccccccccchhh-cccccEEEEEEeCCCCEEEEe
Confidence 678899999 99999998 699999999999 9999866 6677777 899999999999999999999
Q ss_pred cCCC---------C----CccccCCcceEEEeecCCCe---EEEecCCcEEEEEeCCCCcccceeeeeEecccCc---CE
Q 006825 399 SDER---------D----TSSEKGGRRSSSATDDSQDV---SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNG---SI 459 (630)
Q Consensus 399 S~D~---------d----t~s~~gh~~~Vsa~~~s~d~---l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~---~V 459 (630)
+.++ + ...+.+|...|.++.|++++ +++++.|+.|++||....+ ++..+.+|.. .|
T Consensus 135 ~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~-----~~~~~~~~~~~~~~v 209 (615)
T 1pgu_A 135 GEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK-----FSASDRTHHKQGSFV 209 (615)
T ss_dssp ECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE-----EEEEECSSSCTTCCE
T ss_pred ccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcc-----eeeeecccCCCCceE
Confidence 8773 1 22377899999999999985 8999999999999987654 5678999999 99
Q ss_pred EEEEEccC-CCEEEEEeCCCcEEEEECcCCceeeeeeccccc---CcccceEEEEECCCCCEEEEeeCCCeeeeeccccc
Q 006825 460 WSIKFSLD-GRYLASAGEDCVIHVWQVVESERKGELLEKQED---GHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRS 535 (630)
Q Consensus 460 ~sVaFSpD-G~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~---gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~ 535 (630)
++++|+|+ +++|++++.|++|++||+.+++.+..+ .. +|...|.+++|+ ++.++++++.|+.|
T Consensus 210 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~----~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i-------- 276 (615)
T 1pgu_A 210 RDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYI----EDDQEPVQGGIFALSWL-DSQKFATVGADATI-------- 276 (615)
T ss_dssp EEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEEC----CBTTBCCCSCEEEEEES-SSSEEEEEETTSEE--------
T ss_pred EEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEe----cccccccCCceEEEEEc-CCCEEEEEcCCCcE--------
Confidence 99999999 999999999999999999999887764 14 899999999999 99999999999999
Q ss_pred ccccccccCccccccEEEeC-CCCceEEeccC----CCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEe-cCCc
Q 006825 536 INRKSLSLDHMVVPETVFAL-SDKPICSFQGH----LDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDY 609 (630)
Q Consensus 536 ~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GH----s~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~ 609 (630)
++|++ +++.+..+..| ...+.++.|....+|++++.|++|++||+.+++++..+. |...
T Consensus 277 ---------------~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~ 341 (615)
T 1pgu_A 277 ---------------RVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKG 341 (615)
T ss_dssp ---------------EEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSC
T ss_pred ---------------EEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCC
Confidence 77777 56777777766 367788888633888888888889999888888888887 8888
Q ss_pred eEEEEc
Q 006825 610 DISLVD 615 (630)
Q Consensus 610 V~sVas 615 (630)
|++++.
T Consensus 342 v~~~~~ 347 (615)
T 1pgu_A 342 ITALTV 347 (615)
T ss_dssp EEEEET
T ss_pred EEEEEe
Confidence 888775
No 77
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.97 E-value=9.5e-29 Score=259.49 Aligned_cols=233 Identities=12% Similarity=0.102 Sum_probs=186.3
Q ss_pred eecCccceeEEEeec----ceEeecCCCccEecccCCCCceeEEecC--CccCCEEEEEEcCCCCeEEeecCCC-----C
Q 006825 335 CVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGMKSKKKG--SWFKSIRTVASSVTGHKERRSSDER-----D 403 (630)
Q Consensus 335 l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~~~~lk~--gH~~~V~sVAfSpdG~~lasgS~D~-----d 403 (630)
+.+|...|.+++|+| .|++++.|++++ +||+.+ ..+..+.. +|...|.+++|+|+|+++++++.|+ +
T Consensus 114 ~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~-iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d 191 (383)
T 3ei3_B 114 GMGPGDAITGMKFNQFNTNQLFVSSIRGATT-LRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLG 191 (383)
T ss_dssp CCSTTCBEEEEEEETTEEEEEEEEETTTEEE-EEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEE
T ss_pred cCCcCCceeEEEeCCCCCCEEEEEeCCCEEE-EEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEE
Confidence 357999999999988 699999999999 999985 55555551 3458899999999999999999887 1
Q ss_pred -----CccccCCcceEEEeecCCCe---EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc-CCCEEEEE
Q 006825 404 -----TSSEKGGRRSSSATDDSQDV---SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASA 474 (630)
Q Consensus 404 -----t~s~~gh~~~Vsa~~~s~d~---l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp-DG~~LASg 474 (630)
...+.+|...|.++.+++++ +++++.|++|++||+...+... .++..+ +|...|++++|+| +|++|+++
T Consensus 192 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~-~~~~~v~~~~~s~~~~~~l~~~ 269 (383)
T 3ei3_B 192 LDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKN-SYIAEM-PHEKPVNAAYFNPTDSTKLLTT 269 (383)
T ss_dssp TTSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTT-CEEEEE-ECSSCEEEEEECTTTSCEEEEE
T ss_pred CCCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCccc-ceEEEe-cCCCceEEEEEcCCCCCEEEEE
Confidence 12367899999999999885 8999999999999997643211 234444 7999999999999 99999999
Q ss_pred eCCCcEEEEECcCCceeeeeecc--cccCcc----------cceEEEEECCCCCEEEEeeCCCeeeeecccccccccccc
Q 006825 475 GEDCVIHVWQVVESERKGELLEK--QEDGHL----------NMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLS 542 (630)
Q Consensus 475 S~DgtIrVWDl~tg~~~~~l~~~--~~~gh~----------~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s 542 (630)
+.|++|+|||+.++.....+... ....|. ..+..++|+|++++ +++.|+.|
T Consensus 270 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i--------------- 332 (383)
T 3ei3_B 270 DQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTI--------------- 332 (383)
T ss_dssp ESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCE---------------
T ss_pred cCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeE---------------
Confidence 99999999999998877665311 111222 23444666677666 66678887
Q ss_pred cCccccccEEEeC-CCCceEEecc--CCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCC
Q 006825 543 LDHMVVPETVFAL-SDKPICSFQG--HLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSS 597 (630)
Q Consensus 543 ~d~~i~~~~Vwdl-sgk~l~tL~G--Hs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~t 597 (630)
++|++ +++++.++.+ |...|..++|+|+ .+|++|+ |++|+|||+.+
T Consensus 333 --------~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 333 --------DIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp --------EEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred --------EEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 88998 7889999987 5677888899999 8999997 99999999874
No 78
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=1.2e-28 Score=249.21 Aligned_cols=267 Identities=13% Similarity=0.087 Sum_probs=208.1
Q ss_pred eeeecCccceeEEEeec---ceEeecCCCccEecccCCCC----ceeEEecCCccCCEEEEEEcC--CCCeEEeecCCC-
Q 006825 333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGG----GMKSKKKGSWFKSIRTVASSV--TGHKERRSSDER- 402 (630)
Q Consensus 333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG----~~~~~lk~gH~~~V~sVAfSp--dG~~lasgS~D~- 402 (630)
..+.||...|.+|+|+| .|++|+.|++++ +||+.++ +....+. +|...|.+++|+| +++++++++.|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~-iw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~d~~~l~s~~~dg~ 82 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIK-VFKLDKDTSNWELSDSWR-AHDSSIVAIDWASPEYGRIIASASYDKT 82 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEE-EEEECSSSCCEEEEEEEE-CCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEE-EEECCCCCCcceecceec-cCCCcEEEEEEcCCCCCCEEEEEcCCCe
Confidence 35679999999999998 799999999999 9999887 4566777 8999999999999 699999999887
Q ss_pred ------CC-------------ccccCCcceEEEeecCCC--e--EEEecCCcEEEEEeCCCCcccceeee--------eE
Q 006825 403 ------DT-------------SSEKGGRRSSSATDDSQD--V--SFHGQERVRVRQYGKSCKDLTALYKC--------QE 451 (630)
Q Consensus 403 ------dt-------------~s~~gh~~~Vsa~~~s~d--~--l~Sgs~Dg~VriWd~~~~el~~~~~v--------~t 451 (630)
+. ....+|...|.++.+.++ + +++++.|++|++||+..++....... ..
T Consensus 83 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 162 (351)
T 3f3f_A 83 VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIP 162 (351)
T ss_dssp EEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCC
T ss_pred EEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccc
Confidence 11 125689999999999987 5 89999999999999877653221111 01
Q ss_pred ecccCcCEEEEEEccC---CCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCC----CEEEEeeCC
Q 006825 452 IQAHNGSIWSIKFSLD---GRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEP----TSLSPKHLD 524 (630)
Q Consensus 452 L~gHt~~V~sVaFSpD---G~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg----~~lasgs~D 524 (630)
..+|...|.+++|+|+ +.+|++++.|+.+.+|+...+..... ..+.+|...|.+++|+|++ .+|++++.|
T Consensus 163 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~d 239 (351)
T 3f3f_A 163 PANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVA---AKLPGHKSLIRSISWAPSIGRWYQLIATGCKD 239 (351)
T ss_dssp CSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEE---EECCCCCSCEEEEEECCCSSCSSEEEEEEETT
T ss_pred cCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeee---eecCCCCcceeEEEECCCCCCcceEEEEEcCC
Confidence 1378999999999997 99999999999998888877664222 1247899999999999998 899999999
Q ss_pred CeeeeecccccccccccccC-----------------------ccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-C
Q 006825 525 NHLEKKRRGRSINRKSLSLD-----------------------HMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-Q 579 (630)
Q Consensus 525 g~I~i~~~~~~~~~~s~s~d-----------------------~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~ 579 (630)
+.|++|+............. .......+|.. ..+++..+.+|...|++++|+|+ .
T Consensus 240 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~ 319 (351)
T 3f3f_A 240 GRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGT 319 (351)
T ss_dssp SCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSC
T ss_pred CeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCC
Confidence 99999997653211100000 00001123333 34778889999999999999999 9
Q ss_pred eEEEEECCCcEEEEeCCCCcEEEEE
Q 006825 580 HLLSSSMDKTVRLWHLSSKTCLKIF 604 (630)
Q Consensus 580 ~LaSgS~DgtVrIWDl~tg~~l~t~ 604 (630)
+|++++.||+|+|||+.+++.+..+
T Consensus 320 ~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 320 ILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp CEEEEETTSCEEEEEECTTSCEEEE
T ss_pred EEEEecCCCcEEEEecCcCcchhhe
Confidence 9999999999999999988655444
No 79
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=5.4e-28 Score=244.57 Aligned_cols=257 Identities=15% Similarity=0.160 Sum_probs=213.9
Q ss_pred eeEEEeec-ceEeecCCCccEecccCCCCceeEEec-CCccCCEEEEEEcCCCCeEEeecCCC-------CC----cccc
Q 006825 342 VQELMRRQ-NVEEGNKDSFDLNNNGSSGGGMKSKKK-GSWFKSIRTVASSVTGHKERRSSDER-------DT----SSEK 408 (630)
Q Consensus 342 V~~Lafs~-~laSgS~D~tvr~vWD~~tG~~~~~lk-~gH~~~V~sVAfSpdG~~lasgS~D~-------dt----~s~~ 408 (630)
.+.|+|++ .+++.+.|++|+ |||+.+|+++++++ .+|...|.+|+|+|+|+++++|+.|+ .+ ....
T Consensus 28 ~~~l~WS~~~~lAvg~D~tV~-iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~ 106 (318)
T 4ggc_A 28 LNLVDWSSGNVLAVALDNSVY-LWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT 106 (318)
T ss_dssp CBCEEECTTSEEEEEETTEEE-EEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred ceEEEECCCCEEEEEeCCEEE-EEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEec
Confidence 46788988 344445699999 99999999988776 27888999999999999999999998 22 2277
Q ss_pred CCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCC
Q 006825 409 GGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVES 488 (630)
Q Consensus 409 gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg 488 (630)
+|...+.+..+....+++++.++.+++|+...... .+..+.+|...+..+.|++++++|++++.|++|+|||+.++
T Consensus 107 ~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 182 (318)
T 4ggc_A 107 SHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEH----HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG 182 (318)
T ss_dssp CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSC----EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCB
T ss_pred CccceEEEeecCCCEEEEEecCCceEeeecCCCce----eEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCC
Confidence 89999999999888899999999999999876542 56788999999999999999999999999999999999987
Q ss_pred ceeeeeecccccCcccceEEEEECCCCCEE---EEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEecc
Q 006825 489 ERKGELLEKQEDGHLNMLLLANGSPEPTSL---SPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQG 565 (630)
Q Consensus 489 ~~~~~l~~~~~~gh~~~V~svafSpdg~~l---asgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~G 565 (630)
+...... .....+...|..++++|++..+ ++++.+++| ++|+...........
T Consensus 183 ~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i-----------------------~lwd~~~~~~~~~~~ 238 (318)
T 4ggc_A 183 EGGWVPL-QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHI-----------------------RIWNVCSGACLSAVD 238 (318)
T ss_dssp TTBSCCS-EEECCCCSCEEEEEECTTSTTEEEEEECTTTCEE-----------------------EEEETTTCCEEEEEE
T ss_pred cccccce-eeecccCCceEEEEecCCCCcEEEEEecCCCCEE-----------------------EEEeccccccccccc
Confidence 6543322 1236777889999999986533 356677788 788885555555566
Q ss_pred CCCCEEEEEEcCC-CeEEEEE--CCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcEEEEecce
Q 006825 566 HLDDVLDLSWSKS-QHLLSSS--MDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLRFAYGAFL 627 (630)
Q Consensus 566 Hs~~V~sLafSPd-~~LaSgS--~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~lAsgs~~ 627 (630)
|...|..+.|+|+ ..+++++ .|++|+|||+.++++++++. |.+.|++|+ +|++..|++++.+
T Consensus 239 ~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D 305 (318)
T 4ggc_A 239 AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAAD 305 (318)
T ss_dssp CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecC
Confidence 8889999999998 7776654 79999999999999999998 999999999 9999999998765
No 80
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.2e-29 Score=264.94 Aligned_cols=266 Identities=15% Similarity=0.151 Sum_probs=220.0
Q ss_pred CccceeEEEeec----ceEee----------cCCCccEecccCCCCceeE-EecCCccCCEEEEEEcCCCCeEEeecCCC
Q 006825 338 HSPIVQELMRRQ----NVEEG----------NKDSFDLNNNGSSGGGMKS-KKKGSWFKSIRTVASSVTGHKERRSSDER 402 (630)
Q Consensus 338 Hs~~V~~Lafs~----~laSg----------S~D~tvr~vWD~~tG~~~~-~lk~gH~~~V~sVAfSpdG~~lasgS~D~ 402 (630)
+.+.|.+++|+| .|++| +.|++++ +||+.++.... .....|...|.+++|+|+|++|++++.|+
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~-iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 89 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLE-LWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNG 89 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCE-EEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSS
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEE-EEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCC
Confidence 445688899988 58888 8999999 99999886321 11226999999999999999999998886
Q ss_pred -------CC--------ccccCCcceEEEeecCCC-e--EEEecCCcEEEEEeCCCCccc----ceeeeeEecccCcCEE
Q 006825 403 -------DT--------SSEKGGRRSSSATDDSQD-V--SFHGQERVRVRQYGKSCKDLT----ALYKCQEIQAHNGSIW 460 (630)
Q Consensus 403 -------dt--------~s~~gh~~~Vsa~~~s~d-~--l~Sgs~Dg~VriWd~~~~el~----~~~~v~tL~gHt~~V~ 460 (630)
.. ..+.+|...|.++.++++ . +++++.|++|++||+...+.. .......+.+|...|.
T Consensus 90 ~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 169 (416)
T 2pm9_A 90 SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVI 169 (416)
T ss_dssp CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCC
T ss_pred eEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCee
Confidence 22 126789999999999986 3 999999999999999876410 1122344578999999
Q ss_pred EEEEccC-CCEEEEEeCCCcEEEEECcCCceeeeeec-ccccCcccceEEEEECCCC-CEEEEeeCCC---eeeeecccc
Q 006825 461 SIKFSLD-GRYLASAGEDCVIHVWQVVESERKGELLE-KQEDGHLNMLLLANGSPEP-TSLSPKHLDN---HLEKKRRGR 534 (630)
Q Consensus 461 sVaFSpD-G~~LASgS~DgtIrVWDl~tg~~~~~l~~-~~~~gh~~~V~svafSpdg-~~lasgs~Dg---~I~i~~~~~ 534 (630)
+++|+|+ +.+|++++.|++|++||+.+++.+..+.. ....+|...|.+++|+|++ .++++++.|+ .|
T Consensus 170 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i------- 242 (416)
T 2pm9_A 170 SLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSI------- 242 (416)
T ss_dssp EEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCC-------
T ss_pred EEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceE-------
Confidence 9999998 78999999999999999999887777521 1112337889999999997 6899999998 88
Q ss_pred cccccccccCccccccEEEeC-CC-CceEEec-cCCCCEEEEEEcC-C-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCC
Q 006825 535 SINRKSLSLDHMVVPETVFAL-SD-KPICSFQ-GHLDDVLDLSWSK-S-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSD 608 (630)
Q Consensus 535 ~~~~~s~s~d~~i~~~~Vwdl-sg-k~l~tL~-GHs~~V~sLafSP-d-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~ 608 (630)
++|++ ++ +++..+. +|...|++++|+| + .+|++++.|++|+|||+.+++++.++. |..
T Consensus 243 ----------------~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~ 306 (416)
T 2pm9_A 243 ----------------LIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGN 306 (416)
T ss_dssp ----------------CEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSS
T ss_pred ----------------EEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCC
Confidence 78887 33 6778888 9999999999999 7 999999999999999999999999998 999
Q ss_pred ceEEEE-cCCC-cEEEEecce
Q 006825 609 YDISLV-DRLM-LRFAYGAFL 627 (630)
Q Consensus 609 ~V~sVa-s~~~-~~lAsgs~~ 627 (630)
.|++++ +|++ ..+++++.+
T Consensus 307 ~v~~~~~s~~~~~~l~s~~~d 327 (416)
T 2pm9_A 307 WCFKTKFAPEAPDLFACASFD 327 (416)
T ss_dssp CCCCEEECTTCTTEEEECCSS
T ss_pred ceEEEEECCCCCCEEEEEecC
Confidence 999999 8887 788888654
No 81
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.97 E-value=6.9e-28 Score=259.23 Aligned_cols=278 Identities=15% Similarity=0.149 Sum_probs=238.1
Q ss_pred eecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEEEEe------------------eecCCCceeEEEEcCC
Q 006825 262 SINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVN------------------EIQEDGTWKKVKEVGT 323 (630)
Q Consensus 262 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~~v~------------------e~~~dg~~~~l~dv~T 323 (630)
+++++|++| +++..++.++||++.+|+..... ..+.||. .++|++.+
T Consensus 124 ~~~~~g~~l--------------~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~-i~vwd~~~ 188 (445)
T 2ovr_B 124 CLQFCGNRI--------------VSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRT-LKVWNAET 188 (445)
T ss_dssp EEEEETTEE--------------EEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSC-EEEEETTT
T ss_pred EEEEcCCEE--------------EEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecCCEEEEEeCCCe-EEEEECCc
Confidence 577788898 56667889999999988765321 2234444 67999999
Q ss_pred CceEeeecceeeecCccceeEEEeec-ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC
Q 006825 324 GRQLTIEEFEMCVGHSPIVQELMRRQ-NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER 402 (630)
Q Consensus 324 G~~lt~eef~~l~GHs~~V~~Lafs~-~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~ 402 (630)
|+.+ .++.+|...|.+++|.+ .+++|+.|++++ +||+.+++.+..+. +|...|.+++| +|+++++++.|+
T Consensus 189 ~~~~-----~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~-~wd~~~~~~~~~~~-~~~~~v~~~~~--~~~~l~~~~~dg 259 (445)
T 2ovr_B 189 GECI-----HTLYGHTSTVRCMHLHEKRVVSGSRDATLR-VWDIETGQCLHVLM-GHVAAVRCVQY--DGRRVVSGAYDF 259 (445)
T ss_dssp TEEE-----EEECCCSSCEEEEEEETTEEEEEETTSEEE-EEESSSCCEEEEEE-CCSSCEEEEEE--CSSCEEEEETTS
T ss_pred CcEE-----EEECCCCCcEEEEEecCCEEEEEeCCCEEE-EEECCCCcEEEEEc-CCcccEEEEEE--CCCEEEEEcCCC
Confidence 9888 88899999999999988 899999999999 99999999999998 99999999999 789999999887
Q ss_pred -----C--C----ccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEE
Q 006825 403 -----D--T----SSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYL 471 (630)
Q Consensus 403 -----d--t----~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~L 471 (630)
+ + ....+|...|.++.+....+++++.|++|++||..+++ ++.++.+|...|.++.+ ++++|
T Consensus 260 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~-----~~~~~~~~~~~v~~~~~--~~~~l 332 (445)
T 2ovr_B 260 MVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGN-----CIHTLTGHQSLTSGMEL--KDNIL 332 (445)
T ss_dssp CEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCC-----EEEEECCCCSCEEEEEE--ETTEE
T ss_pred EEEEEECCCCcEeEEecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCC-----EEEEEcCCcccEEEEEE--eCCEE
Confidence 1 1 22678999999999976679999999999999998765 46788999999999988 57799
Q ss_pred EEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccE
Q 006825 472 ASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPET 551 (630)
Q Consensus 472 ASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~ 551 (630)
++|+.|++|++||+.+++.+..+. ....|...|.+++|+ +.++++++.|+.| +
T Consensus 333 ~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~~~~v~~~~~~--~~~l~s~~~dg~v-----------------------~ 385 (445)
T 2ovr_B 333 VSGNADSTVKIWDIKTGQCLQTLQ--GPNKHQSAVTCLQFN--KNFVITSSDDGTV-----------------------K 385 (445)
T ss_dssp EEEETTSCEEEEETTTCCEEEEEC--STTSCSSCEEEEEEC--SSEEEEEETTSEE-----------------------E
T ss_pred EEEeCCCeEEEEECCCCcEEEEEc--cCCCCCCCEEEEEEC--CCEEEEEeCCCeE-----------------------E
Confidence 999999999999999998877752 113488899999995 5899999999999 8
Q ss_pred EEeC-CCCceEEe-----ccCCCCEEEEEEcCC-CeEEEEECCCc----EEEEeCCC
Q 006825 552 VFAL-SDKPICSF-----QGHLDDVLDLSWSKS-QHLLSSSMDKT----VRLWHLSS 597 (630)
Q Consensus 552 Vwdl-sgk~l~tL-----~GHs~~V~sLafSPd-~~LaSgS~Dgt----VrIWDl~t 597 (630)
+|++ +++.+..+ .+|...|++++|+|+ .+|++|+.||+ |.|||+..
T Consensus 386 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 386 LWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp EEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred EEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 8888 67888887 578999999999999 88999999998 99999875
No 82
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.3e-28 Score=257.77 Aligned_cols=259 Identities=15% Similarity=0.133 Sum_probs=220.2
Q ss_pred eeecCccceeEEEeec----ceEeecCCCccEecccC----CCCc------eeEEecC---------CccCCEEEEEEcC
Q 006825 334 MCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGS----SGGG------MKSKKKG---------SWFKSIRTVASSV 390 (630)
Q Consensus 334 ~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~----~tG~------~~~~lk~---------gH~~~V~sVAfSp 390 (630)
....|...|.+++|+| .||+|+.|++++ +|++ .+++ ....+.. +|...|.+++|+|
T Consensus 40 ~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~-iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 118 (425)
T 1r5m_A 40 KEIVKLDNIVSSTWNPLDESILAYGEKNSVAR-LARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSH 118 (425)
T ss_dssp EEEEECSCCSEEEECSSCTTEEEEEETBTEEE-EEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECT
T ss_pred eeeeccCceEEEEECCCCCcEEEEecCCceEE-EEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcC
Confidence 3455779999999998 699999999999 9999 8888 4555551 2788999999999
Q ss_pred CCCeEEeecCCCC----------CccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcC
Q 006825 391 TGHKERRSSDERD----------TSSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGS 458 (630)
Q Consensus 391 dG~~lasgS~D~d----------t~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~ 458 (630)
+|++|++++.++. ...+.+|...|.++.+++++ +++++.|+.|++|++.+++ .++.+..|...
T Consensus 119 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-----~~~~~~~~~~~ 193 (425)
T 1r5m_A 119 DGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGT-----VMQHFELKETG 193 (425)
T ss_dssp TSSEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTE-----EEEEECCC---
T ss_pred CCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCc-----EEEEeeccccC
Confidence 9999999998871 12277899999999999887 8999999999999997764 45677777777
Q ss_pred ---------------EEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeC
Q 006825 459 ---------------IWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHL 523 (630)
Q Consensus 459 ---------------V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~ 523 (630)
|.+++|++++ .|++++.|+.|++||+.+++.+..+ .+|...|.+++|+|++.+|++++.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l~~~~~ 267 (425)
T 1r5m_A 194 GSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKL-----IGHHGPISVLEFNDTNKLLLSASD 267 (425)
T ss_dssp ------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEE-----CCCSSCEEEEEEETTTTEEEEEET
T ss_pred ccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeee-----ccCCCceEEEEECCCCCEEEEEcC
Confidence 9999999986 5888999999999999998777664 688999999999999999999999
Q ss_pred CCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEE
Q 006825 524 DNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLK 602 (630)
Q Consensus 524 Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~l~ 602 (630)
|+.| ++|++ +++++..+.+|...|.+++|+|+++|++++.|++|+|||+.+++++.
T Consensus 268 d~~i-----------------------~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 324 (425)
T 1r5m_A 268 DGTL-----------------------RIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLA 324 (425)
T ss_dssp TSCE-----------------------EEECSSSBSCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEE
T ss_pred CCEE-----------------------EEEECCCCccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeE
Confidence 9999 78887 67888899999999999999998899999999999999999999999
Q ss_pred EEe-cCCceEEEE-cCCCcEEEEecce
Q 006825 603 IFS-HSDYDISLV-DRLMLRFAYGAFL 627 (630)
Q Consensus 603 t~~-H~~~V~sVa-s~~~~~lAsgs~~ 627 (630)
.+. |...|++++ ++++..+++++..
T Consensus 325 ~~~~~~~~i~~~~~s~~~~~l~~~~~d 351 (425)
T 1r5m_A 325 LSIVDGVPIFAGRISQDGQKYAVAFMD 351 (425)
T ss_dssp EEECTTCCEEEEEECTTSSEEEEEETT
T ss_pred ecccCCccEEEEEEcCCCCEEEEEECC
Confidence 998 999999999 8888888888643
No 83
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.6e-28 Score=253.64 Aligned_cols=241 Identities=14% Similarity=0.124 Sum_probs=202.4
Q ss_pred eeeecCccceeEEEeec---ceEeecCCCccEecccCC--CCceeEEecCCccCCEEEEEEcCC--CCeEEeecCCC---
Q 006825 333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSS--GGGMKSKKKGSWFKSIRTVASSVT--GHKERRSSDER--- 402 (630)
Q Consensus 333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~--tG~~~~~lk~gH~~~V~sVAfSpd--G~~lasgS~D~--- 402 (630)
..+.||...|.+|+|+| .|++|+.|++++ +||+. +++.+..+. +|...|.+++|+++ ++++++++.|+
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~-iw~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~ 82 (379)
T 3jrp_A 5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIK-IFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGTILASCSYDGKVL 82 (379)
T ss_dssp CCEEECCCCEEEEEECSSSSEEEEEETTSCEE-EEEEETTEEEEEEEEC-CCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred EEecCCcccEEEEEEcCCCCEEEEEECCCcEE-EEecCCCcceeeeEec-CCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence 78899999999999998 799999999999 99998 667778888 99999999999987 99999999887
Q ss_pred ----CC------ccccCCcceEEEeecCCC--e--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc--
Q 006825 403 ----DT------SSEKGGRRSSSATDDSQD--V--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-- 466 (630)
Q Consensus 403 ----dt------~s~~gh~~~Vsa~~~s~d--~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp-- 466 (630)
.+ ....+|...|.++.++++ + +++++.|+.|++||+...... ....+.+|...|.+++|+|
T Consensus 83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~---~~~~~~~~~~~v~~~~~~~~~ 159 (379)
T 3jrp_A 83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT---SPIIIDAHAIGVNSASWAPAT 159 (379)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCC---CEEEEECCTTCEEEEEECCCC
T ss_pred EEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCce---eeEEecCCCCceEEEEEcCcc
Confidence 11 126678999999999987 5 999999999999999776432 3456789999999999999
Q ss_pred -----------CCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCC---CCEEEEeeCCCeeeeecc
Q 006825 467 -----------DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE---PTSLSPKHLDNHLEKKRR 532 (630)
Q Consensus 467 -----------DG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpd---g~~lasgs~Dg~I~i~~~ 532 (630)
++.+|++|+.|++|++||+.++.....+. ..+.+|...|.+++|+|+ +.+|++++.|+.|
T Consensus 160 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i----- 233 (379)
T 3jrp_A 160 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE-STLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC----- 233 (379)
T ss_dssp ----------CTTCEEEEEETTSCEEEEEEETTTTEEEEE-EEECCCSSCEEEEEECCCCSSSEEEEEEETTSCE-----
T ss_pred ccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeE-EEEecccCcEeEEEECCCCCCCCeEEEEeCCCEE-----
Confidence 79999999999999999998776443322 224789999999999999 8999999999999
Q ss_pred cccccccccccCccccccEEEeCC-CC-----ceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEE
Q 006825 533 GRSINRKSLSLDHMVVPETVFALS-DK-----PICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLK 602 (630)
Q Consensus 533 ~~~~~~~s~s~d~~i~~~~Vwdls-gk-----~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~ 602 (630)
++|++. +. .+.....|...|++++|+|+ .+|++++.||.|+||++..+....
T Consensus 234 ------------------~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~ 292 (379)
T 3jrp_A 234 ------------------IIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWE 292 (379)
T ss_dssp ------------------EEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTEEE
T ss_pred ------------------EEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCccc
Confidence 666662 21 12222458899999999999 999999999999999998654433
No 84
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.4e-29 Score=283.54 Aligned_cols=212 Identities=10% Similarity=0.002 Sum_probs=174.8
Q ss_pred ceEeecCCCccEecccCCCCcee----EEecCCccCCEEEEEEcCC------CCeEEeecCCC-----C--Cc-------
Q 006825 350 NVEEGNKDSFDLNNNGSSGGGMK----SKKKGSWFKSIRTVASSVT------GHKERRSSDER-----D--TS------- 405 (630)
Q Consensus 350 ~laSgS~D~tvr~vWD~~tG~~~----~~lk~gH~~~V~sVAfSpd------G~~lasgS~D~-----d--t~------- 405 (630)
.+++++.|++|+ ||++.+++.. .++. +|.+.|++|+|+|+ +.+||+++.|+ + ..
T Consensus 175 ~laS~s~D~tI~-iWd~~~~~~~~~~~~~l~-~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~ 252 (524)
T 2j04_B 175 MFDKEKHSSCIQ-IFKMNTSTLHCVKVQTIV-HSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVF 252 (524)
T ss_dssp -------CEEEE-EEEEETTTCCEEEEEEEE-ECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEE
T ss_pred hhccCCCCceEE-EEEccCCCCCceEEEEEE-ecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccc
Confidence 478999999999 9999888753 3455 78999999999997 57999999987 1 11
Q ss_pred --------cccCCcceEEEeecCCCe-EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEE--EEccCC-CEEEE
Q 006825 406 --------SEKGGRRSSSATDDSQDV-SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSI--KFSLDG-RYLAS 473 (630)
Q Consensus 406 --------s~~gh~~~Vsa~~~s~d~-l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sV--aFSpDG-~~LAS 473 (630)
.+.+|...|.+++|+++. +++|+.|++|++||+.+++. ....+.+|...|++| +|+|+| ++|||
T Consensus 253 ~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~----~~~~~~~H~~~V~sv~~~~s~~g~~~laS 328 (524)
T 2j04_B 253 KMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEV----PSFYDQVHDSYILSVSTAYSDFEDTVVST 328 (524)
T ss_dssp ECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSS----CSEEEECSSSCEEEEEEECCTTSCCEEEE
T ss_pred eeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCC----ceEEeecccccEEEEEEEcCCCCCeEEEE
Confidence 246788999999998765 99999999999999986532 345689999999999 578888 89999
Q ss_pred EeCCCcEEEEECcCCceeeeeecccccCccc--ceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccE
Q 006825 474 AGEDCVIHVWQVVESERKGELLEKQEDGHLN--MLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPET 551 (630)
Q Consensus 474 gS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~--~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~ 551 (630)
||.|++|||||++++++...+ .+|.. .|.+++|+|++..+++++.|++| +
T Consensus 329 ~S~D~tvklWD~~~~~~~~~~-----~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv-----------------------~ 380 (524)
T 2j04_B 329 VAVDGYFYIFNPKDIATTKTT-----VSRFRGSNLVPVVYCPQIYSYIYSDGASSL-----------------------R 380 (524)
T ss_dssp EETTSEEEEECGGGHHHHCEE-----EEECSCCSCCCEEEETTTTEEEEECSSSEE-----------------------E
T ss_pred eccCCeEEEEECCCCCccccc-----ccccccCcccceEeCCCcCeEEEeCCCCcE-----------------------E
Confidence 999999999999988776654 34442 47889999999999999999999 8
Q ss_pred EEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeC
Q 006825 552 VFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHL 595 (630)
Q Consensus 552 Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl 595 (630)
+|++ ++.++.++.+|...|++|+|+|+ .+|++|+.|++|+|||+
T Consensus 381 lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~ 426 (524)
T 2j04_B 381 AVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNA 426 (524)
T ss_dssp EEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBS
T ss_pred EEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEec
Confidence 8887 67788899999999999999999 99999999999999985
No 85
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.97 E-value=5.7e-29 Score=255.70 Aligned_cols=256 Identities=10% Similarity=0.035 Sum_probs=203.7
Q ss_pred eeEEEEcCCCceEeeecceeeecCccceeEEEeecc-------eEeecCCCccEecccCCCCceeEEecCCccCCEEEEE
Q 006825 315 WKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQN-------VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVA 387 (630)
Q Consensus 315 ~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~~-------laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVA 387 (630)
..++|+..+++.+..-.......|...|.+++|+|. |++|+.|++++ +||+.+++.+..+. +|...|.+++
T Consensus 45 ~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~-v~d~~~~~~~~~~~-~~~~~i~~~~ 122 (366)
T 3k26_A 45 RVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIR-IINPITMQCIKHYV-GHGNAINELK 122 (366)
T ss_dssp EEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEE-EECTTTCCEEEEEE-SCCSCEEEEE
T ss_pred EEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEE-EEEchhceEeeeec-CCCCcEEEEE
Confidence 456777777766511111111236788999999984 99999999999 99999999999998 9999999999
Q ss_pred EcC-CCCeEEeecCCC-----C--Ccc----c---cCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccce----
Q 006825 388 SSV-TGHKERRSSDER-----D--TSS----E---KGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTAL---- 446 (630)
Q Consensus 388 fSp-dG~~lasgS~D~-----d--t~s----~---~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~---- 446 (630)
|+| +++++++++.|+ + +.. . .+|...|.++.+++++ +++++.|+.|++||...++....
T Consensus 123 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 202 (366)
T 3k26_A 123 FHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKES 202 (366)
T ss_dssp ECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHH
T ss_pred ECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCcccccccee
Confidence 999 999999999887 1 111 2 6899999999999887 89999999999999986542110
Q ss_pred -------------------eeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeee---------eeccc
Q 006825 447 -------------------YKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGE---------LLEKQ 498 (630)
Q Consensus 447 -------------------~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~---------l~~~~ 498 (630)
.....+.+|...|.+++|+ +++|++++.|+.|++||+.++..... .....
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 280 (366)
T 3k26_A 203 YDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGR 280 (366)
T ss_dssp HTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEE
T ss_pred EEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheecc
Confidence 0123445599999999998 78999999999999999987654100 00122
Q ss_pred ccCcccceEEEEECCC--CCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCC----ceEEeccC--CCC
Q 006825 499 EDGHLNMLLLANGSPE--PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDK----PICSFQGH--LDD 569 (630)
Q Consensus 499 ~~gh~~~V~svafSpd--g~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk----~l~tL~GH--s~~ 569 (630)
+.+|...|.+++|+|+ +.+|++++.|+.| ++|++ +++ .+..+.+| ...
T Consensus 281 ~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i-----------------------~vwd~~~~~~~~~~~~~~~~~~~~~~ 337 (366)
T 3k26_A 281 FDYSQCDIWYMRFSMDFWQKMLALGNQVGKL-----------------------YVWDLEVEDPHKAKCTTLTHHKCGAA 337 (366)
T ss_dssp EECSSCCSSCCCCEECTTSSEEEEECTTSCE-----------------------EEEECCSSSGGGCEEEEECCTTCCSC
T ss_pred ccccCCcEEEEEEcCCCCCcEEEEEecCCcE-----------------------EEEECCCCCCccccceEEcccccCCc
Confidence 4678888999999999 9999999999999 77777 333 44578888 799
Q ss_pred EEEEEEcCC-CeEEEEECCCcEEEEeCCC
Q 006825 570 VLDLSWSKS-QHLLSSSMDKTVRLWHLSS 597 (630)
Q Consensus 570 V~sLafSPd-~~LaSgS~DgtVrIWDl~t 597 (630)
|++++|+|+ ++|++++.||+|+|||+.+
T Consensus 338 v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 338 IRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred eEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 999999999 9999999999999999853
No 86
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.97 E-value=3.2e-28 Score=254.88 Aligned_cols=249 Identities=16% Similarity=0.084 Sum_probs=206.4
Q ss_pred eEEEEcCCCceE-eeecceeeecCccceeEEEeec----------ceEeecCCCccEecccCCCCce-----eEEecCCc
Q 006825 316 KKVKEVGTGRQL-TIEEFEMCVGHSPIVQELMRRQ----------NVEEGNKDSFDLNNNGSSGGGM-----KSKKKGSW 379 (630)
Q Consensus 316 ~~l~dv~TG~~l-t~eef~~l~GHs~~V~~Lafs~----------~laSgS~D~tvr~vWD~~tG~~-----~~~lk~gH 379 (630)
.++|++.+++.. ..+....+.+|...|.+++|.| .|++++.|++++ +||+.+++. +..+. +|
T Consensus 38 i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~-iw~~~~~~~~~~~~~~~~~-~~ 115 (397)
T 1sq9_A 38 LKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLL-FYRITREDETKKVIFEKLD-LL 115 (397)
T ss_dssp EEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEE-EEEEEECTTTCCEEEEEEC-CS
T ss_pred EEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEE-EEEccCCcccccccceeec-cc
Confidence 456666665510 1112367789999999999984 489999999999 999999987 88888 88
Q ss_pred -----cCCEEEEEEc----CCCCe-EEeecCCC-------CC------c---------cc-------cCCcceEEEeecC
Q 006825 380 -----FKSIRTVASS----VTGHK-ERRSSDER-------DT------S---------SE-------KGGRRSSSATDDS 420 (630)
Q Consensus 380 -----~~~V~sVAfS----pdG~~-lasgS~D~-------dt------~---------s~-------~gh~~~Vsa~~~s 420 (630)
...|.+++|+ |+|++ +++++.|+ .. . .+ ..|...|.++.++
T Consensus 116 ~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 195 (397)
T 1sq9_A 116 DSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDIS 195 (397)
T ss_dssp CTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEEC
T ss_pred ccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEEC
Confidence 5999999999 99999 99998876 22 1 12 3367788899998
Q ss_pred CCe-EEEecCCcEEEEEeCCCCcccceeeeeEecc---c---CcCEEEEEEccCCCEEEEEeCC---CcEEEEECcCCce
Q 006825 421 QDV-SFHGQERVRVRQYGKSCKDLTALYKCQEIQA---H---NGSIWSIKFSLDGRYLASAGED---CVIHVWQVVESER 490 (630)
Q Consensus 421 ~d~-l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~g---H---t~~V~sVaFSpDG~~LASgS~D---gtIrVWDl~tg~~ 490 (630)
+++ +++++.|+.|++||+...+ .+..+.+ | ...|.+++|+|++++|++++.| +.|++||+.+++.
T Consensus 196 ~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~ 270 (397)
T 1sq9_A 196 ERGLIATGFNNGTVQISELSTLR-----PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER 270 (397)
T ss_dssp TTSEEEEECTTSEEEEEETTTTE-----EEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCE
T ss_pred CCceEEEEeCCCcEEEEECCCCc-----eeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcc
Confidence 885 8999999999999997654 4677888 9 9999999999999999999999 9999999999888
Q ss_pred eeeeecccccC-------------cccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-C
Q 006825 491 KGELLEKQEDG-------------HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-S 556 (630)
Q Consensus 491 ~~~l~~~~~~g-------------h~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-s 556 (630)
+..+ .+ |...|.+++|+|++.+|++++.|+.| ++|++ +
T Consensus 271 ~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i-----------------------~iwd~~~ 322 (397)
T 1sq9_A 271 IGSL-----SVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKL-----------------------RFWDVKT 322 (397)
T ss_dssp EEEE-----CBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEE-----------------------EEEETTT
T ss_pred ccee-----ccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeE-----------------------EEEEcCC
Confidence 7775 45 88999999999999999999999999 77887 6
Q ss_pred CCceEEec------cC---------------CCCEEEEEEcCC-----------CeEEEEECCCcEEEEeCCCCc
Q 006825 557 DKPICSFQ------GH---------------LDDVLDLSWSKS-----------QHLLSSSMDKTVRLWHLSSKT 599 (630)
Q Consensus 557 gk~l~tL~------GH---------------s~~V~sLafSPd-----------~~LaSgS~DgtVrIWDl~tg~ 599 (630)
++++.++. +| ...|++++|+|+ .+|++++.|++|+||++.+|+
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 323 KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred CceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 77888888 78 999999999999 399999999999999998764
No 87
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.96 E-value=8.9e-28 Score=255.59 Aligned_cols=259 Identities=16% Similarity=0.155 Sum_probs=220.8
Q ss_pred eecCccc--eeEEEeec-ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-----C--C
Q 006825 335 CVGHSPI--VQELMRRQ-NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-----D--T 404 (630)
Q Consensus 335 l~GHs~~--V~~Lafs~-~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-----d--t 404 (630)
..||... +..+.+++ .+++++.|++++ +||+.+|+....+...|...|.+|+|+|+|+++++++.|+ + +
T Consensus 87 ~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~-lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 165 (401)
T 4aez_A 87 APGIIDDYYLNLLDWSNLNVVAVALERNVY-VWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVES 165 (401)
T ss_dssp CTTCCCCTTCBCEEECTTSEEEEEETTEEE-EEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred CCCCcCCceEEEEeecCCCEEEEECCCeEE-EeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcC
Confidence 3466554 45577776 788999999999 9999999999988867999999999999999999999887 1 1
Q ss_pred ----ccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcE
Q 006825 405 ----SSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVI 480 (630)
Q Consensus 405 ----~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtI 480 (630)
....+|...|.++.+....+++++.|+.|++||+.... ..+..+.+|.+.|.+++|+|++++|++|+.|++|
T Consensus 166 ~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v 241 (401)
T 4aez_A 166 QTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIAN----HQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVV 241 (401)
T ss_dssp CCEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSS----CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred CeEEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCc----ceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeE
Confidence 22678999999999988889999999999999997543 2467889999999999999999999999999999
Q ss_pred EEEECcCCceeeeeecccccCcccceEEEEECCCC-CEEEEee--CCCeeeeecccccccccccccCccccccEEEeC-C
Q 006825 481 HVWQVVESERKGELLEKQEDGHLNMLLLANGSPEP-TSLSPKH--LDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-S 556 (630)
Q Consensus 481 rVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg-~~lasgs--~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-s 556 (630)
++||+.++.....+ .+|...|.+++|+|++ .++++++ .|+.| ++|++ +
T Consensus 242 ~iwd~~~~~~~~~~-----~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i-----------------------~i~d~~~ 293 (401)
T 4aez_A 242 QIWDARSSIPKFTK-----TNHNAAVKAVAWCPWQSNLLATGGGTMDKQI-----------------------HFWNAAT 293 (401)
T ss_dssp EEEETTCSSEEEEE-----CCCSSCCCEEEECTTSTTEEEEECCTTTCEE-----------------------EEEETTT
T ss_pred EEccCCCCCccEEe-----cCCcceEEEEEECCCCCCEEEEecCCCCCEE-----------------------EEEECCC
Confidence 99999998877764 6889999999999976 5555554 69999 88888 6
Q ss_pred CCceEEeccCCCCEEEEEEcCC-CeEEEEE--CCCcEEEEeCCCCcEEEE--Ee-cCCceEEEE-cCCCcEEEEecce
Q 006825 557 DKPICSFQGHLDDVLDLSWSKS-QHLLSSS--MDKTVRLWHLSSKTCLKI--FS-HSDYDISLV-DRLMLRFAYGAFL 627 (630)
Q Consensus 557 gk~l~tL~GHs~~V~sLafSPd-~~LaSgS--~DgtVrIWDl~tg~~l~t--~~-H~~~V~sVa-s~~~~~lAsgs~~ 627 (630)
++++..+. |...|.+++|+|+ .+|++++ .|++|+|||+.+++.... +. |...|++++ ++++.++++++.+
T Consensus 294 ~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~d 370 (401)
T 4aez_A 294 GARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASD 370 (401)
T ss_dssp CCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTT
T ss_pred CCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCC
Confidence 77777775 6678999999999 8888854 899999999999876665 44 999999999 9999999988754
No 88
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.96 E-value=4.6e-28 Score=248.63 Aligned_cols=250 Identities=13% Similarity=0.074 Sum_probs=203.0
Q ss_pred ecceeeecCccceeEEEeec------ceEeecCCCccEecccCCC-Ccee-EEecCCccCCEEEEEEcCCCCeEEeecCC
Q 006825 330 EEFEMCVGHSPIVQELMRRQ------NVEEGNKDSFDLNNNGSSG-GGMK-SKKKGSWFKSIRTVASSVTGHKERRSSDE 401 (630)
Q Consensus 330 eef~~l~GHs~~V~~Lafs~------~laSgS~D~tvr~vWD~~t-G~~~-~~lk~gH~~~V~sVAfSpdG~~lasgS~D 401 (630)
+.+..+.+|...|.+|+|+| .|++|+.|++++ +||+.+ +..+ ..+. +|...|.+++|+|+|++++
T Consensus 30 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~-iw~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~----- 102 (368)
T 3mmy_A 30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVR-CWEVQDSGQTIPKAQQ-MHTGPVLDVCWSDDGSKVF----- 102 (368)
T ss_dssp CCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEE-EEEECTTSCEEEEEEE-ECSSCEEEEEECTTSSEEE-----
T ss_pred ceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEE-EEEcCCCCceeEEEec-cccCCEEEEEECcCCCEEE-----
Confidence 34478899999999999997 499999999999 999998 6665 5666 9999999999999988774
Q ss_pred CCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEE--ccCCCEEEEEeCCCc
Q 006825 402 RDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKF--SLDGRYLASAGEDCV 479 (630)
Q Consensus 402 ~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaF--SpDG~~LASgS~Dgt 479 (630)
+++.|+.|++||+..++ ...+.+|...|++++| +|++++|++++.|++
T Consensus 103 ------------------------s~~~dg~v~iwd~~~~~------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~ 152 (368)
T 3mmy_A 103 ------------------------TASCDKTAKMWDLSSNQ------AIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKT 152 (368)
T ss_dssp ------------------------EEETTSEEEEEETTTTE------EEEEEECSSCEEEEEEEECSSCEEEEEEETTSE
T ss_pred ------------------------EEcCCCcEEEEEcCCCC------ceeeccccCceEEEEEEeCCCCCEEEEccCCCc
Confidence 55677899999998764 2346789999999999 899999999999999
Q ss_pred EEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccccccc----------------------
Q 006825 480 IHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSIN---------------------- 537 (630)
Q Consensus 480 IrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~---------------------- 537 (630)
|++||+.+++.+..+ ..+ ..+.++.+.+ ..++.+..++.+.+|+......
T Consensus 153 i~vwd~~~~~~~~~~-----~~~-~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (368)
T 3mmy_A 153 LKFWDTRSSNPMMVL-----QLP-ERCYCADVIY--PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDK 224 (368)
T ss_dssp EEEECSSCSSCSEEE-----ECS-SCEEEEEEET--TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECT
T ss_pred EEEEECCCCcEEEEE-----ecC-CCceEEEecC--CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccC
Confidence 999999998877764 333 2455555553 4677777888888887654211
Q ss_pred ------ccccccCccccccEEEeCC-C---CceEEeccCCC------------CEEEEEEcCC-CeEEEEECCCcEEEEe
Q 006825 538 ------RKSLSLDHMVVPETVFALS-D---KPICSFQGHLD------------DVLDLSWSKS-QHLLSSSMDKTVRLWH 594 (630)
Q Consensus 538 ------~~s~s~d~~i~~~~Vwdls-g---k~l~tL~GHs~------------~V~sLafSPd-~~LaSgS~DgtVrIWD 594 (630)
....+.++.+ ++|++. . +.+..+.+|.. .|++++|+|+ .+|++++.||+|+|||
T Consensus 225 ~~~~~~~~~~~~dg~i---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd 301 (368)
T 3mmy_A 225 QNKPTGFALGSIEGRV---AIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWD 301 (368)
T ss_dssp TSCEEEEEEEETTSEE---EEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred CCCCCeEEEecCCCcE---EEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEE
Confidence 1112223333 788883 3 56778888887 7999999999 8999999999999999
Q ss_pred CCCCcEEEEEe-cCCceEEEE-cCCCcEEEEecce
Q 006825 595 LSSKTCLKIFS-HSDYDISLV-DRLMLRFAYGAFL 627 (630)
Q Consensus 595 l~tg~~l~t~~-H~~~V~sVa-s~~~~~lAsgs~~ 627 (630)
+.+++++..+. |...|++++ ++++..+++++.+
T Consensus 302 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d 336 (368)
T 3mmy_A 302 KDARTKLKTSEQLDQPISACCFNHNGNIFAYASSY 336 (368)
T ss_dssp TTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECC
T ss_pred CCCCcEEEEecCCCCCceEEEECCCCCeEEEEecc
Confidence 99999999998 999999999 9999999988654
No 89
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.96 E-value=1e-28 Score=253.88 Aligned_cols=276 Identities=12% Similarity=0.035 Sum_probs=218.0
Q ss_pred eecCccceeEEEeec-------ceEeecCCCccEecccCCCCceeEEecC----CccCCEEEEEEcCC----CCeEEeec
Q 006825 335 CVGHSPIVQELMRRQ-------NVEEGNKDSFDLNNNGSSGGGMKSKKKG----SWFKSIRTVASSVT----GHKERRSS 399 (630)
Q Consensus 335 l~GHs~~V~~Lafs~-------~laSgS~D~tvr~vWD~~tG~~~~~lk~----gH~~~V~sVAfSpd----G~~lasgS 399 (630)
..||...|.+|+|+| .+++++.++.++ +||+.+++.+..+.. .|...|.+++|+|+ |.++++++
T Consensus 14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~-vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 92 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVT-LYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG 92 (366)
T ss_dssp ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEE-EEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred ecCCCCceEEEEEecccCCCCceEEEECCCCEEE-EEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence 458999999999996 266677777999 999999988777761 25678999999999 67899999
Q ss_pred CCC-----C--C----ccccCCcceEEEeecCC-Ce--EEEecCCcEEEEEeCCCCcccceeeeeEe---cccCcCEEEE
Q 006825 400 DER-----D--T----SSEKGGRRSSSATDDSQ-DV--SFHGQERVRVRQYGKSCKDLTALYKCQEI---QAHNGSIWSI 462 (630)
Q Consensus 400 ~D~-----d--t----~s~~gh~~~Vsa~~~s~-d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL---~gHt~~V~sV 462 (630)
.|+ + + ..+.+|...|.++.+++ ++ +++++.|+.|++||+..++ .+..+ .+|...|.++
T Consensus 93 ~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~~v~~~ 167 (366)
T 3k26_A 93 SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT-----LVAIFGGVEGHRDEVLSA 167 (366)
T ss_dssp TTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTE-----EEEEECSTTSCSSCEEEE
T ss_pred CCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCe-----EEEEecccccccCceeEE
Confidence 887 2 1 22678999999999988 54 9999999999999998764 34555 7899999999
Q ss_pred EEccCCCEEEEEeCCCcEEEEECcCCceeeeeec-----------------------ccccCcccceEEEEECCCCCEEE
Q 006825 463 KFSLDGRYLASAGEDCVIHVWQVVESERKGELLE-----------------------KQEDGHLNMLLLANGSPEPTSLS 519 (630)
Q Consensus 463 aFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~-----------------------~~~~gh~~~V~svafSpdg~~la 519 (630)
+|+|++++|++++.|++|++||+.+++....+.. ....+|...|.+++|+ +.+++
T Consensus 168 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~ 245 (366)
T 3k26_A 168 DYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLIL 245 (366)
T ss_dssp EECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEE
T ss_pred EECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEE
Confidence 9999999999999999999999988765433210 1123488999999998 77999
Q ss_pred EeeCCCeeeeeccccccccc-ccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC---CeEEEEECCCcEEEEeC
Q 006825 520 PKHLDNHLEKKRRGRSINRK-SLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS---QHLLSSSMDKTVRLWHL 595 (630)
Q Consensus 520 sgs~Dg~I~i~~~~~~~~~~-s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd---~~LaSgS~DgtVrIWDl 595 (630)
+++.|+.|++|+........ ...... .....+..+.+|...|++++|+|+ .+|++|+.|+.|+|||+
T Consensus 246 ~~~~d~~i~~wd~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~ 316 (366)
T 3k26_A 246 SKSCENAIVCWKPGKMEDDIDKIKPSE---------SNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDL 316 (366)
T ss_dssp EECSSSEEEEEEESSTTCCGGGCCTTC---------CCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEEC
T ss_pred EEecCCEEEEEeCCCccccccccccCC---------cchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEEC
Confidence 99999999777654422110 000000 011357788999999999999987 78999999999999999
Q ss_pred CCCc----EEEEEe-c--CCceEEEE-cCCCcEEEEecce
Q 006825 596 SSKT----CLKIFS-H--SDYDISLV-DRLMLRFAYGAFL 627 (630)
Q Consensus 596 ~tg~----~l~t~~-H--~~~V~sVa-s~~~~~lAsgs~~ 627 (630)
.+++ .+..+. | ...|++++ ++++..+++++.+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 356 (366)
T 3k26_A 317 EVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDD 356 (366)
T ss_dssp CSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred CCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCC
Confidence 9875 444666 5 79999999 8899999988654
No 90
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.96 E-value=8.1e-28 Score=242.21 Aligned_cols=258 Identities=9% Similarity=0.044 Sum_probs=215.2
Q ss_pred CCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCC---cee
Q 006825 299 DNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGG---GMK 372 (630)
Q Consensus 299 ddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG---~~~ 372 (630)
.+|+.+++.. .||. .++|++.+++.+ ..+.+|...|.+++|+| .+++|+.|++++ +|++... +.+
T Consensus 27 ~~~~~l~s~~--~dg~-v~vw~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~-~~~~~~~~~~~~~ 97 (313)
T 3odt_A 27 VDDSKVASVS--RDGT-VRLWSKDDQWLG-----TVVYTGQGFLNSVCYDSEKELLLFGGKDTMIN-GVPLFATSGEDPL 97 (313)
T ss_dssp EETTEEEEEE--TTSE-EEEEEESSSEEE-----EEEEECSSCEEEEEEETTTTEEEEEETTSCEE-EEETTCCTTSCC-
T ss_pred cCCCEEEEEE--cCCc-EEEEECCCCEEE-----EEeecCCccEEEEEECCCCCEEEEecCCCeEE-EEEeeecCCCCcc
Confidence 4566665543 3554 679999888877 77889999999999999 799999999999 9997654 567
Q ss_pred EEecCCccCCEEEEEEcCCCCeEEeecCCC-----CC----ccccCCcceEEEeecCC---CeEEEecCCcEEEEEeCCC
Q 006825 373 SKKKGSWFKSIRTVASSVTGHKERRSSDER-----DT----SSEKGGRRSSSATDDSQ---DVSFHGQERVRVRQYGKSC 440 (630)
Q Consensus 373 ~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-----dt----~s~~gh~~~Vsa~~~s~---d~l~Sgs~Dg~VriWd~~~ 440 (630)
..+. +|...|.+++| ++.++++++.|+ +. .....|...+.++.+.+ ..+++++.|+.|++||..
T Consensus 98 ~~~~-~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~- 173 (313)
T 3odt_A 98 YTLI-GHQGNVCSLSF--QDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND- 173 (313)
T ss_dssp CEEC-CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT-
T ss_pred cchh-hcccCEEEEEe--cCCEEEEEeCCCCEEEEcCCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC-
Confidence 7777 99999999999 678999999887 21 22667888888777644 449999999999999942
Q ss_pred CcccceeeeeEecc-cCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEE
Q 006825 441 KDLTALYKCQEIQA-HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLS 519 (630)
Q Consensus 441 ~el~~~~~v~tL~g-Ht~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~la 519 (630)
.....+.. |...|.+++|+|++. |++++.|+.|++||+.+++.+..+ .+|...|.+++|+|++ .++
T Consensus 174 ------~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~-----~~~~~~i~~~~~~~~~-~l~ 240 (313)
T 3odt_A 174 ------KVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTY-----EGHESFVYCIKLLPNG-DIV 240 (313)
T ss_dssp ------EEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEE-----ECCSSCEEEEEECTTS-CEE
T ss_pred ------ceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhh-----hcCCceEEEEEEecCC-CEE
Confidence 13566777 999999999999998 999999999999999999888774 7899999999999999 588
Q ss_pred EeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCC
Q 006825 520 PKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSK 598 (630)
Q Consensus 520 sgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg 598 (630)
+++.|+.| ++|++ +++++..+.+|...|.+++|+|++.|++++.|+.|+|||+.++
T Consensus 241 ~~~~dg~v-----------------------~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~~ 297 (313)
T 3odt_A 241 SCGEDRTV-----------------------RIWSKENGSLKQVITLPAISIWSVDCMSNGDIIVGSSDNLVRIFSQEKS 297 (313)
T ss_dssp EEETTSEE-----------------------EEECTTTCCEEEEEECSSSCEEEEEECTTSCEEEEETTSCEEEEESCGG
T ss_pred EEecCCEE-----------------------EEEECCCCceeEEEeccCceEEEEEEccCCCEEEEeCCCcEEEEeCCCC
Confidence 89999999 88887 7889999999999999999999955888999999999999998
Q ss_pred cEEEEEe
Q 006825 599 TCLKIFS 605 (630)
Q Consensus 599 ~~l~t~~ 605 (630)
+.+....
T Consensus 298 ~~~~~~~ 304 (313)
T 3odt_A 298 RWASEDE 304 (313)
T ss_dssp GCCC---
T ss_pred ceeehhh
Confidence 8766554
No 91
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.96 E-value=9.6e-28 Score=255.35 Aligned_cols=247 Identities=15% Similarity=0.132 Sum_probs=203.9
Q ss_pred eEEEEcCCCceEeeecceeee-cCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCC
Q 006825 316 KKVKEVGTGRQLTIEEFEMCV-GHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVT 391 (630)
Q Consensus 316 ~~l~dv~TG~~lt~eef~~l~-GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpd 391 (630)
.++|+..+|+.+ ..+. +|...|.+++|+| .|++|+.|++++ +||+.+++.+.++. +|...|.+++| +
T Consensus 115 v~lw~~~~~~~~-----~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~-iwd~~~~~~~~~~~-~~~~~v~~~~~--~ 185 (401)
T 4aez_A 115 VYVWNADSGSVS-----ALAETDESTYVASVKWSHDGSFLSVGLGNGLVD-IYDVESQTKLRTMA-GHQARVGCLSW--N 185 (401)
T ss_dssp EEEEETTTCCEE-----EEEECCTTCCEEEEEECTTSSEEEEEETTSCEE-EEETTTCCEEEEEC-CCSSCEEEEEE--E
T ss_pred EEEeeCCCCcEe-----EeeecCCCCCEEEEEECCCCCEEEEECCCCeEE-EEECcCCeEEEEec-CCCCceEEEEE--C
Confidence 567777777766 3333 3889999999998 799999999999 99999999999998 99999999999 5
Q ss_pred CCeEEeecCCC-----CC-------ccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCc
Q 006825 392 GHKERRSSDER-----DT-------SSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNG 457 (630)
Q Consensus 392 G~~lasgS~D~-----dt-------~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~ 457 (630)
++++++++.|+ +. ..+.+|...|.++.+++++ +++++.|+.|++||+...+ .+..+.+|..
T Consensus 186 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-----~~~~~~~~~~ 260 (401)
T 4aez_A 186 RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSI-----PKFTKTNHNA 260 (401)
T ss_dssp TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSS-----EEEEECCCSS
T ss_pred CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCC-----ccEEecCCcc
Confidence 68999999887 11 2267899999999999887 9999999999999998754 4677889999
Q ss_pred CEEEEEEccCC-CEEEEEe--CCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEe--eCCCeeeeecc
Q 006825 458 SIWSIKFSLDG-RYLASAG--EDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPK--HLDNHLEKKRR 532 (630)
Q Consensus 458 ~V~sVaFSpDG-~~LASgS--~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasg--s~Dg~I~i~~~ 532 (630)
.|.+++|+|++ .+|++++ .|++|++||+.+++.+..+ .+...|.+++|+|++.+++++ ..|+.|
T Consensus 261 ~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~~~~g~~dg~i----- 329 (401)
T 4aez_A 261 AVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTV------DAGSQVTSLIWSPHSKEIMSTHGFPDNNL----- 329 (401)
T ss_dssp CCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEE------ECSSCEEEEEECSSSSEEEEEECTTTCEE-----
T ss_pred eEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEE------eCCCcEEEEEECCCCCeEEEEeecCCCcE-----
Confidence 99999999966 5777766 7999999999999887774 355689999999999999994 489999
Q ss_pred cccccccccccCccccccEEEeC-CCC--ceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825 533 GRSINRKSLSLDHMVVPETVFAL-SDK--PICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS 605 (630)
Q Consensus 533 ~~~~~~~s~s~d~~i~~~~Vwdl-sgk--~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~ 605 (630)
.+|++ +++ .+..+.+|...|++++|+|+ .+|++++.|++|+||++.+++++....
T Consensus 330 ------------------~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~ 388 (401)
T 4aez_A 330 ------------------SIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPI 388 (401)
T ss_dssp ------------------EEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--------
T ss_pred ------------------EEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccccc
Confidence 67776 433 34457799999999999999 999999999999999999998877653
No 92
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.96 E-value=6.8e-28 Score=259.24 Aligned_cols=253 Identities=15% Similarity=0.189 Sum_probs=202.7
Q ss_pred eEEEEcCCCceEeeecceeeecCccceeEEEeec-ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCe
Q 006825 316 KKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ-NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHK 394 (630)
Q Consensus 316 ~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~-~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~ 394 (630)
.++|+..+++.+ ..+.||...|.+|+|.. .|++|+.|++|+ +||+.+++.+.++. +|...|.+++|++ .+
T Consensus 155 i~iwd~~~~~~~-----~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~-vwd~~~~~~~~~~~-~h~~~v~~l~~~~--~~ 225 (435)
T 1p22_A 155 IKIWDKNTLECK-----RILTGHTGSVLCLQYDERVIITGSSDSTVR-VWDVNTGEMLNTLI-HHCEAVLHLRFNN--GM 225 (435)
T ss_dssp EEEEESSSCCEE-----EEECCCSSCEEEEECCSSEEEEEETTSCEE-EEESSSCCEEEEEC-CCCSCEEEEECCT--TE
T ss_pred EEEEeCCCCeEE-----EEEcCCCCcEEEEEECCCEEEEEcCCCeEE-EEECCCCcEEEEEc-CCCCcEEEEEEcC--CE
Confidence 456777777776 77889999999999976 899999999999 99999999999998 9999999999974 68
Q ss_pred EEeecCCC-----C--C-------ccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEE
Q 006825 395 ERRSSDER-----D--T-------SSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIW 460 (630)
Q Consensus 395 lasgS~D~-----d--t-------~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~ 460 (630)
+++++.|+ + + ....+|...|.++.+....+++|+.|++|++||..+++ ++.++.+|...|.
T Consensus 226 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~-----~~~~~~~~~~~v~ 300 (435)
T 1p22_A 226 MVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCE-----FVRTLNGHKRGIA 300 (435)
T ss_dssp EEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCC-----EEEEEECCSSCEE
T ss_pred EEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCc-----EEEEEcCCCCcEE
Confidence 99999887 1 1 23678999999999977779999999999999998764 5778999999999
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccc
Q 006825 461 SIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKS 540 (630)
Q Consensus 461 sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s 540 (630)
+++| ++++|++|+.|++|++||+.+++.+..+ .+|...|.+++| ++.++++++.|+.|++|+.........
T Consensus 301 ~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~-----~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~ 371 (435)
T 1p22_A 301 CLQY--RDRLVVSGSSDNTIRLWDIECGACLRVL-----EGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRA 371 (435)
T ss_dssp EEEE--ETTEEEEEETTSCEEEEETTTCCEEEEE-----CCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTS
T ss_pred EEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEE-----eCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccc
Confidence 9999 5789999999999999999999888774 789999999999 788999999999994444322100000
Q ss_pred cccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825 541 LSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS 605 (630)
Q Consensus 541 ~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~l~t~~ 605 (630)
. ....++.++.+|...|++++|.+ .+|++|+.||+|+|||+.+........
T Consensus 372 ~-------------~~~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~Dg~i~iwd~~~~~~~~~~~ 422 (435)
T 1p22_A 372 P-------------AGTLCLRTLVEHSGRVFRLQFDE-FQIVSSSHDDTILIWDFLNDPAAQAEP 422 (435)
T ss_dssp C-------------TTTTEEEEECCCSSCCCCEEECS-SCEEECCSSSEEEEEC-----------
T ss_pred c-------------ccchheeeccCCCCCeEEEEeCC-CEEEEEeCCCEEEEEECCCCCCcccCC
Confidence 0 00126888999999999999932 889999999999999998877655443
No 93
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.96 E-value=1.7e-27 Score=255.36 Aligned_cols=256 Identities=16% Similarity=0.181 Sum_probs=214.0
Q ss_pred eeEEEeec-ceEeecCCCccEecccCCCCceeEEecC-CccCCEEEEEEcCCCCeEEeecCCC-------CC----cccc
Q 006825 342 VQELMRRQ-NVEEGNKDSFDLNNNGSSGGGMKSKKKG-SWFKSIRTVASSVTGHKERRSSDER-------DT----SSEK 408 (630)
Q Consensus 342 V~~Lafs~-~laSgS~D~tvr~vWD~~tG~~~~~lk~-gH~~~V~sVAfSpdG~~lasgS~D~-------dt----~s~~ 408 (630)
.+.|+|++ ++++.+.|++|+ |||+.+|+..+.+.. +|...|.+|+|+|+|++|++|+.|+ .+ ....
T Consensus 108 ~~~l~wS~~n~lAvgld~tV~-lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~ 186 (420)
T 4gga_A 108 LNLVDWSSGNVLAVALDNSVY-LWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT 186 (420)
T ss_dssp CBCEEECTTSEEEEEETTEEE-EEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred ceeEEECCCCEEEEEeCCEEE-EEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEe
Confidence 45577776 333444599999 999999998887653 7888999999999999999999998 12 2278
Q ss_pred CCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCC
Q 006825 409 GGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVES 488 (630)
Q Consensus 409 gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg 488 (630)
+|...+.++.+....+++|+.|+.+++|+...... .+.++.+|...|..+.|+|+|++|++++.|+.|+||++.++
T Consensus 187 ~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~----~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~ 262 (420)
T 4gga_A 187 SHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEH----HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG 262 (420)
T ss_dssp CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSC----EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCC
T ss_pred CCCCceEEEeeCCCEEEEEeCCCceeEeeecccce----eeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccc
Confidence 89999999999988899999999999999876542 56789999999999999999999999999999999999887
Q ss_pred ceeeeeecccccCcccceEEEEECCCC-CEEEE--eeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEec
Q 006825 489 ERKGELLEKQEDGHLNMLLLANGSPEP-TSLSP--KHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQ 564 (630)
Q Consensus 489 ~~~~~l~~~~~~gh~~~V~svafSpdg-~~las--gs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~ 564 (630)
+.....+ .....|...|.+++|+|.+ .++++ |+.|++| ++|++ +++++..+.
T Consensus 263 ~~~~~~~-~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I-----------------------~iwd~~t~~~~~~~~ 318 (420)
T 4gga_A 263 EGGWVPL-QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHI-----------------------RIWNVCSGACLSAVD 318 (420)
T ss_dssp SSCSCCS-EEECCCSSCEEEEEECTTCTTEEEEEECTTTCEE-----------------------EEEETTTTEEEEEEE
T ss_pred cccceee-eeecccCCceeeeeeCCCcccEEEEEeecCCCEE-----------------------EEEeCCccccceeec
Confidence 6433221 1247888999999999975 44444 4578998 88888 677777777
Q ss_pred cCCCCEEEEEEcCC-CeEEEEE--CCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcEEEEecce
Q 006825 565 GHLDDVLDLSWSKS-QHLLSSS--MDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLRFAYGAFL 627 (630)
Q Consensus 565 GHs~~V~sLafSPd-~~LaSgS--~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~lAsgs~~ 627 (630)
.| ..|.++.|+|+ +.|++++ .|++|+|||+.+++++.+|. |.+.|++|+ +|++..|++++.+
T Consensus 319 ~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D 385 (420)
T 4gga_A 319 AH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAAD 385 (420)
T ss_dssp CS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred cc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecC
Confidence 55 57899999999 8887765 79999999999999999998 999999999 9999999998765
No 94
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=2.7e-28 Score=258.88 Aligned_cols=257 Identities=10% Similarity=0.044 Sum_probs=193.0
Q ss_pred EEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec-----------------------
Q 006825 293 CLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ----------------------- 349 (630)
Q Consensus 293 ~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~----------------------- 349 (630)
..-|...+++|..+....+. ..+||++.++. ..|..+++.+|...|.+++|.|
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~--~v~lw~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~ 119 (356)
T 2w18_A 44 AMFWERAGCKEPCIITACED--VVSLWKALDAW--QWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFC 119 (356)
T ss_dssp EEEEC----CEEEEEEEESS--EEEEEEESSSS--BEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC
T ss_pred eeeeccCCCCccEEEEeccc--eEEEcccCCCc--cceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEE
Confidence 45578899999988777654 46899999982 1233388888887666666655
Q ss_pred ---------ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecC
Q 006825 350 ---------NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDS 420 (630)
Q Consensus 350 ---------~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s 420 (630)
.+++++ .+++ +|++.+|+.+.....||.+.|+.++|+|+|+.+++ ..+|...+..++|+
T Consensus 120 spd~~~~~~~l~s~g--~~~~-v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s---------~~~~~~~v~~l~fs 187 (356)
T 2w18_A 120 SSDDESEKQVLLKSG--NIKA-VLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKEN---------QFLMPPEETILTFA 187 (356)
T ss_dssp ------CCEEEEEEE--EEEE-EEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEE---------EEECCCSSCEEEEE
T ss_pred CCCccccccEEEeCC--CeEE-EEecCCCcEEEecccCCCCcEEEEEECCCCceeee---------eccCCCceeeEEee
Confidence 244444 3366 89999999888854489999999999999998874 45666666665555
Q ss_pred C-----CeEEEecCCcEEEEEeCCCCcccceeeeeEecccC---cCEEEEEEccCCCEE------------EEEeCCCcE
Q 006825 421 Q-----DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHN---GSIWSIKFSLDGRYL------------ASAGEDCVI 480 (630)
Q Consensus 421 ~-----d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt---~~V~sVaFSpDG~~L------------ASgS~DgtI 480 (630)
+ ..+++++.|++||+||+++++ ++++|.+|. ..|.+++|+|+|+++ +||+.|++|
T Consensus 188 ~~~g~~~~LaSgS~D~TIkIWDl~TGk-----~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tI 262 (356)
T 2w18_A 188 EVQGMQEALLGTTIMNNIVIWNLKTGQ-----LLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQL 262 (356)
T ss_dssp EEETSTTEEEEEETTSEEEEEETTTCC-----EEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEE
T ss_pred ccCCCCceEEEecCCCcEEEEECCCCc-----EEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEE
Confidence 5 449999999999999998875 577888754 467888999999976 678999999
Q ss_pred EEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCc
Q 006825 481 HVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKP 559 (630)
Q Consensus 481 rVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~ 559 (630)
++||..+++.+..+......+|...+....+ ++.++++++.|++| +||++ ++++
T Consensus 263 klWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTI-----------------------kIWDl~tGk~ 317 (356)
T 2w18_A 263 IVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTI-----------------------AIWDLLLGQC 317 (356)
T ss_dssp EEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCE-----------------------EEEETTTCSE
T ss_pred EEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcE-----------------------EEEECCCCcE
Confidence 9999999988765431112577666544444 48899999999999 89998 8899
Q ss_pred eEEeccCCCCEE-EEEEcCC-CeEEEEECCCcEEEEeC
Q 006825 560 ICSFQGHLDDVL-DLSWSKS-QHLLSSSMDKTVRLWHL 595 (630)
Q Consensus 560 l~tL~GHs~~V~-sLafSPd-~~LaSgS~DgtVrIWDl 595 (630)
+++|.+|...|. .++|+|+ ++|+||+.|++|||||+
T Consensus 318 l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 318 TALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 999999998765 5899999 99999999999999995
No 95
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.96 E-value=9.1e-28 Score=258.28 Aligned_cols=255 Identities=15% Similarity=0.154 Sum_probs=222.3
Q ss_pred eeeecCccceeEEEeec-ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-------CC
Q 006825 333 EMCVGHSPIVQELMRRQ-NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-------DT 404 (630)
Q Consensus 333 ~~l~GHs~~V~~Lafs~-~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-------dt 404 (630)
....+|...|.++.|.. .+++|+.|++++ +||..+++.+.++. +|...|.+++| +++++++|+.|+ .+
T Consensus 127 ~~~~~~~~~v~~~~~d~~~l~~g~~dg~i~-iwd~~~~~~~~~~~-~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~ 202 (435)
T 1p22_A 127 HCRSETSKGVYCLQYDDQKIVSGLRDNTIK-IWDKNTLECKRILT-GHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT 202 (435)
T ss_dssp ECCCSSCCCEEEEECCSSEEEEEESSSCEE-EEESSSCCEEEEEC-CCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS
T ss_pred ecccCCCCcEEEEEECCCEEEEEeCCCeEE-EEeCCCCeEEEEEc-CCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCC
Confidence 44567888899999976 899999999999 99999999999998 99999999998 889999999987 12
Q ss_pred ----ccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcE
Q 006825 405 ----SSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVI 480 (630)
Q Consensus 405 ----~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtI 480 (630)
..+.+|...|.++.+.+..+++|+.|++|++||...++.. .....+.+|...|.+++| ++++|++|+.|++|
T Consensus 203 ~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~--~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i 278 (435)
T 1p22_A 203 GEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDI--TLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTI 278 (435)
T ss_dssp CCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCC--EEEEEECCCSSCEEEEEE--ETTEEEEEETTSEE
T ss_pred CcEEEEEcCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCc--eeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeE
Confidence 2267899999999999888999999999999999876432 234678999999999999 88999999999999
Q ss_pred EEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCc
Q 006825 481 HVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKP 559 (630)
Q Consensus 481 rVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~ 559 (630)
++||+.+++.+..+ .+|...|.++.+ ++.++++++.|+.| ++|++ ++++
T Consensus 279 ~vwd~~~~~~~~~~-----~~~~~~v~~~~~--~~~~l~~g~~dg~i-----------------------~iwd~~~~~~ 328 (435)
T 1p22_A 279 KVWNTSTCEFVRTL-----NGHKRGIACLQY--RDRLVVSGSSDNTI-----------------------RLWDIECGAC 328 (435)
T ss_dssp EEEETTTCCEEEEE-----ECCSSCEEEEEE--ETTEEEEEETTSCE-----------------------EEEETTTCCE
T ss_pred EEEECCcCcEEEEE-----cCCCCcEEEEEe--CCCEEEEEeCCCeE-----------------------EEEECCCCCE
Confidence 99999999888775 789999999998 57899999999999 88888 6899
Q ss_pred eEEeccCCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCc---------EEEEEe-cCCceEEEEcCCCcEEEEecce
Q 006825 560 ICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKT---------CLKIFS-HSDYDISLVDRLMLRFAYGAFL 627 (630)
Q Consensus 560 l~tL~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~---------~l~t~~-H~~~V~sVas~~~~~lAsgs~~ 627 (630)
+.++.+|...|.+++|.+ .+|++|+.||+|+|||+.+++ ++.++. |...|++++. ++..+++++.+
T Consensus 329 ~~~~~~h~~~v~~~~~~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~D 404 (435)
T 1p22_A 329 LRVLEGHEELVRCIRFDN-KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF-DEFQIVSSSHD 404 (435)
T ss_dssp EEEECCCSSCEEEEECCS-SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE-CSSCEEECCSS
T ss_pred EEEEeCCcCcEEEEEecC-CEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe-CCCEEEEEeCC
Confidence 999999999999999932 899999999999999998766 888888 9999999994 34456666543
No 96
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.96 E-value=2.4e-27 Score=272.41 Aligned_cols=243 Identities=14% Similarity=0.105 Sum_probs=209.2
Q ss_pred eEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCC
Q 006825 316 KKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTG 392 (630)
Q Consensus 316 ~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG 392 (630)
.++|++.+|+.+ .++.+|...|.+++|+| .|++|+.|++++ +||+.+|+.+.++. +|...|++++|+|+|
T Consensus 37 v~iwd~~~~~~~-----~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~-vw~~~~~~~~~~~~-~~~~~v~~~~~s~~~ 109 (814)
T 3mkq_A 37 VEIWNYETQVEV-----RSIQVTETPVRAGKFIARKNWIIVGSDDFRIR-VFNYNTGEKVVDFE-AHPDYIRSIAVHPTK 109 (814)
T ss_dssp EEEEETTTTEEE-----EEEECCSSCEEEEEEEGGGTEEEEEETTSEEE-EEETTTCCEEEEEE-CCSSCEEEEEECSSS
T ss_pred EEEEECCCCceE-----EEEecCCCcEEEEEEeCCCCEEEEEeCCCeEE-EEECCCCcEEEEEe-cCCCCEEEEEEeCCC
Confidence 345566666666 67789999999999999 799999999999 99999999999998 999999999999999
Q ss_pred CeEEeecCCC-------CCc-----cccCCcceEEEeecCC-Ce--EEEecCCcEEEEEeCCCCcccceeeeeEecc-cC
Q 006825 393 HKERRSSDER-------DTS-----SEKGGRRSSSATDDSQ-DV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQA-HN 456 (630)
Q Consensus 393 ~~lasgS~D~-------dt~-----s~~gh~~~Vsa~~~s~-d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~g-Ht 456 (630)
+++++++.|+ ++. ...+|...|.++.+++ ++ +++++.|++|++|+...++. ...+.. |.
T Consensus 110 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~-----~~~~~~~~~ 184 (814)
T 3mkq_A 110 PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP-----NFTLTTGQE 184 (814)
T ss_dssp SEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSC-----SEEEECCCT
T ss_pred CEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc-----eeEEecCCC
Confidence 9999999887 121 2678999999999998 55 89999999999999876643 334444 44
Q ss_pred cCEEEEEEcc--CCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccc
Q 006825 457 GSIWSIKFSL--DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGR 534 (630)
Q Consensus 457 ~~V~sVaFSp--DG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~ 534 (630)
..|.+++|+| ++.+|++++.|++|++||+.++..+..+ .+|...|.+++|+|++.++++++.|+.|
T Consensus 185 ~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~dg~v------- 252 (814)
T 3mkq_A 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL-----EGHMSNVSFAVFHPTLPIIISGSEDGTL------- 252 (814)
T ss_dssp TCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEE-----ECCSSCEEEEEECSSSSEEEEEETTSCE-------
T ss_pred CCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEE-----cCCCCCEEEEEEcCCCCEEEEEeCCCeE-------
Confidence 8999999999 9999999999999999999998887774 7888999999999999999999999999
Q ss_pred cccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-C-eEEEEECCCcEEEEeCCCC
Q 006825 535 SINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-Q-HLLSSSMDKTVRLWHLSSK 598 (630)
Q Consensus 535 ~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~-~LaSgS~DgtVrIWDl~tg 598 (630)
++|++ +++.+..+..|...|.+++|+|+ . .+++++.|+.+.+|++..+
T Consensus 253 ----------------~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (814)
T 3mkq_A 253 ----------------KIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGND 303 (814)
T ss_dssp ----------------EEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCC
T ss_pred ----------------EEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCC
Confidence 88888 67899999999999999999998 3 3455555777899987653
No 97
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.9e-27 Score=254.76 Aligned_cols=231 Identities=11% Similarity=0.046 Sum_probs=189.1
Q ss_pred eecCccceeEEEeec---c-eEeecCCCccEecccCC--CCceeEEecC-CccCCEEEEEEcCCCCeEEeecCCCCCccc
Q 006825 335 CVGHSPIVQELMRRQ---N-VEEGNKDSFDLNNNGSS--GGGMKSKKKG-SWFKSIRTVASSVTGHKERRSSDERDTSSE 407 (630)
Q Consensus 335 l~GHs~~V~~Lafs~---~-laSgS~D~tvr~vWD~~--tG~~~~~lk~-gH~~~V~sVAfSpdG~~lasgS~D~dt~s~ 407 (630)
..+|...|.+++|+| . +++|+.|++++ +||+. +++.+..+.. +|...|.+++|+|+|++|+
T Consensus 98 ~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~-iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~----------- 165 (450)
T 2vdu_B 98 APPIYSYIRNLRLTSDESRLIACADSDKSLL-VFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVI----------- 165 (450)
T ss_dssp --CCCCCEEEEEECTTSSEEEEEEGGGTEEE-EEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEE-----------
T ss_pred CCccCCceEEEEEcCCCCEEEEEECCCCeEE-EEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEE-----------
Confidence 457888999999999 4 49999999999 99999 8988888762 5678999999999998775
Q ss_pred cCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccC---CCEEEEEeCCCcEEEEE
Q 006825 408 KGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLD---GRYLASAGEDCVIHVWQ 484 (630)
Q Consensus 408 ~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpD---G~~LASgS~DgtIrVWD 484 (630)
+++.++.|++|++...+... .....+.+|...|++|+|+|+ +++|++|+.|++|+|||
T Consensus 166 ------------------~~~~~g~v~~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd 226 (450)
T 2vdu_B 166 ------------------IADKFGDVYSIDINSIPEEK-FTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISH 226 (450)
T ss_dssp ------------------EEETTSEEEEEETTSCCCSS-CCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEE
T ss_pred ------------------EEeCCCcEEEEecCCccccc-ccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEE
Confidence 44567889999987664321 023467899999999999999 99999999999999999
Q ss_pred CcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEe
Q 006825 485 VVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSF 563 (630)
Q Consensus 485 l~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL 563 (630)
+.++..+..+ ..+|...|.+++|+ ++.+|++++.|+.| ++|++ +++++..+
T Consensus 227 ~~~~~~~~~~----~~~h~~~v~~~~~s-d~~~l~s~~~d~~v-----------------------~vwd~~~~~~~~~~ 278 (450)
T 2vdu_B 227 YPQCFIVDKW----LFGHKHFVSSICCG-KDYLLLSAGGDDKI-----------------------FAWDWKTGKNLSTF 278 (450)
T ss_dssp ESCTTCEEEE----CCCCSSCEEEEEEC-STTEEEEEESSSEE-----------------------EEEETTTCCEEEEE
T ss_pred CCCCceeeee----ecCCCCceEEEEEC-CCCEEEEEeCCCeE-----------------------EEEECCCCcEeeee
Confidence 9998877664 36899999999999 99999999999999 55554 44445444
Q ss_pred c-------------------------cCCCCEEEEEEcCC-CeEEEEE-CCCcEEEEeC--CCC---cEEEEEe-cCCce
Q 006825 564 Q-------------------------GHLDDVLDLSWSKS-QHLLSSS-MDKTVRLWHL--SSK---TCLKIFS-HSDYD 610 (630)
Q Consensus 564 ~-------------------------GHs~~V~sLafSPd-~~LaSgS-~DgtVrIWDl--~tg---~~l~t~~-H~~~V 610 (630)
. .+...|.+++|+|+ .+|++++ .|++|+||++ .++ +++..+. | ..|
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v 357 (450)
T 2vdu_B 279 DYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNV 357 (450)
T ss_dssp ECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCE
T ss_pred cchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-Cce
Confidence 3 23457999999999 8999999 8999999999 666 7777787 6 889
Q ss_pred EEEE-cCCCcEEEEec
Q 006825 611 ISLV-DRLMLRFAYGA 625 (630)
Q Consensus 611 ~sVa-s~~~~~lAsgs 625 (630)
++++ .+...+++.+.
T Consensus 358 ~~~~~~~~~~~v~~~~ 373 (450)
T 2vdu_B 358 ISLSAHNDEFQVTLDN 373 (450)
T ss_dssp EEEEEETTEEEEEECC
T ss_pred EEEEecCCcEEEEEec
Confidence 9999 77666665544
No 98
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.96 E-value=2.3e-26 Score=233.59 Aligned_cols=255 Identities=13% Similarity=0.075 Sum_probs=214.2
Q ss_pred CccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-------CCc--
Q 006825 338 HSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-------DTS-- 405 (630)
Q Consensus 338 Hs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-------dt~-- 405 (630)
|...|.+++|+| .++.+..+..+. +|............ +|...|.+++|+|+|+++++++ |+ ++.
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~ 84 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALI-GPGIPRHARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGN 84 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSS-STTCCSEEEEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTC
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEe-ccccCCccccceec-cCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCc
Confidence 556789999999 676777666676 77766655555555 8999999999999999999998 55 111
Q ss_pred --c-----ccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeC
Q 006825 406 --S-----EKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE 476 (630)
Q Consensus 406 --s-----~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~ 476 (630)
. ..+|...|.++.+++++ +++++.|+.|++|+...++. .....+.+|...|.+++|+|++++|++++.
T Consensus 85 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 161 (337)
T 1gxr_A 85 KSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP---RIKAELTSSAPACYALAISPDSKVCFSCCS 161 (337)
T ss_dssp CSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC-----EEEEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred eeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCc---ceeeecccCCCceEEEEECCCCCEEEEEeC
Confidence 1 12788999999999987 89999999999999987642 245678899999999999999999999999
Q ss_pred CCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-
Q 006825 477 DCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL- 555 (630)
Q Consensus 477 DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl- 555 (630)
|+.|++||+.+++.+..+ .+|...+.+++|+|++.++++++.|+.| ++|++
T Consensus 162 dg~v~~~d~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l~~~~~dg~i-----------------------~~~d~~ 213 (337)
T 1gxr_A 162 DGNIAVWDLHNQTLVRQF-----QGHTDGASCIDISNDGTKLWTGGLDNTV-----------------------RSWDLR 213 (337)
T ss_dssp TSCEEEEETTTTEEEEEE-----CCCSSCEEEEEECTTSSEEEEEETTSEE-----------------------EEEETT
T ss_pred CCcEEEEeCCCCceeeee-----ecccCceEEEEECCCCCEEEEEecCCcE-----------------------EEEECC
Confidence 999999999998877764 7789999999999999999999999999 78887
Q ss_pred CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEecCCceEEEE-cCCCcEEEEecce
Q 006825 556 SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYDISLV-DRLMLRFAYGAFL 627 (630)
Q Consensus 556 sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~H~~~V~sVa-s~~~~~lAsgs~~ 627 (630)
+++.+..+ .|...|.+++|+|+ .+|++++.|+.|++||+.+++......|...|++++ ++++..+++++..
T Consensus 214 ~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 286 (337)
T 1gxr_A 214 EGRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKD 286 (337)
T ss_dssp TTEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCceEeee-cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCC
Confidence 45555555 48889999999999 999999999999999999988765445999999999 8888888887643
No 99
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.96 E-value=3.5e-27 Score=250.34 Aligned_cols=230 Identities=13% Similarity=0.117 Sum_probs=190.8
Q ss_pred cceeeecCccceeEEEeec----ceEeecCCCccEecccCCCC-------ceeEEecCCccCCEEEEEEcCCCC-eEEee
Q 006825 331 EFEMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGG-------GMKSKKKGSWFKSIRTVASSVTGH-KERRS 398 (630)
Q Consensus 331 ef~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG-------~~~~~lk~gH~~~V~sVAfSpdG~-~lasg 398 (630)
.+..+.||...|.+|+|+| .|++|+.|++|+ +||+.++ +.+..+. +|...|.+++|+|+|+ ++
T Consensus 73 ~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~-vw~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~l--- 147 (402)
T 2aq5_A 73 NVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVM-VWEIPDGGLVLPLREPVITLE-GHTKRVGIVAWHPTAQNVL--- 147 (402)
T ss_dssp TCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEE-EEECCTTCCSSCBCSCSEEEE-CCSSCEEEEEECSSBTTEE---
T ss_pred CCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEE-EEEccCCCCccccCCceEEec-CCCCeEEEEEECcCCCCEE---
Confidence 3467889999999999998 799999999999 9999998 6788888 9999999999999873 44
Q ss_pred cCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEe--cccCcCEEEEEEccCCCEEEEEeC
Q 006825 399 SDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEI--QAHNGSIWSIKFSLDGRYLASAGE 476 (630)
Q Consensus 399 S~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL--~gHt~~V~sVaFSpDG~~LASgS~ 476 (630)
++++.|++|++||+..++ .+..+ .+|...|.+++|+|+|++|++++.
T Consensus 148 --------------------------~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 196 (402)
T 2aq5_A 148 --------------------------LSAGCDNVILVWDVGTGA-----AVLTLGPDVHPDTIYSVDWSRDGALICTSCR 196 (402)
T ss_dssp --------------------------EEEETTSCEEEEETTTTE-----EEEEECTTTCCSCEEEEEECTTSSCEEEEET
T ss_pred --------------------------EEEcCCCEEEEEECCCCC-----ccEEEecCCCCCceEEEEECCCCCEEEEEec
Confidence 566778899999998764 46677 899999999999999999999999
Q ss_pred CCcEEEEECcCCceeeeeecccccCcccc-eEEEEECCCCCEEEEe---eCCCeeeeecccccccccccccCccccccEE
Q 006825 477 DCVIHVWQVVESERKGELLEKQEDGHLNM-LLLANGSPEPTSLSPK---HLDNHLEKKRRGRSINRKSLSLDHMVVPETV 552 (630)
Q Consensus 477 DgtIrVWDl~tg~~~~~l~~~~~~gh~~~-V~svafSpdg~~lasg---s~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~V 552 (630)
|++|+|||+.+++.+..+ ..+|... +..+.|+|++.+++++ +.|+.| .+
T Consensus 197 d~~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i-----------------------~i 249 (402)
T 2aq5_A 197 DKRVRVIEPRKGTVVAEK----DRPHEGTRPVHAVFVSEGKILTTGFSRMSERQV-----------------------AL 249 (402)
T ss_dssp TSEEEEEETTTTEEEEEE----ECSSCSSSCCEEEECSTTEEEEEEECTTCCEEE-----------------------EE
T ss_pred CCcEEEEeCCCCceeeee----ccCCCCCcceEEEEcCCCcEEEEeccCCCCceE-----------------------EE
Confidence 999999999998877764 2567665 8899999999999998 789998 77
Q ss_pred EeC-CCC-ceEEe-ccCCCCEEEEEEcCC-CeEE-EEECCCcEEEEeCCCCcE-EEEEe---cCCceEEEE-cCCCcEEE
Q 006825 553 FAL-SDK-PICSF-QGHLDDVLDLSWSKS-QHLL-SSSMDKTVRLWHLSSKTC-LKIFS---HSDYDISLV-DRLMLRFA 622 (630)
Q Consensus 553 wdl-sgk-~l~tL-~GHs~~V~sLafSPd-~~La-SgS~DgtVrIWDl~tg~~-l~t~~---H~~~V~sVa-s~~~~~lA 622 (630)
|++ +++ ++..+ ..|...|.+++|+|+ .+|+ +|+.|++|+|||+.+++. +..+. |...|++++ .|++..++
T Consensus 250 wd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~ 329 (402)
T 2aq5_A 250 WDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEV 329 (402)
T ss_dssp EETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCG
T ss_pred EcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecccccce
Confidence 777 322 23333 357788999999999 7775 566899999999999873 44443 679999999 77766555
Q ss_pred E
Q 006825 623 Y 623 (630)
Q Consensus 623 s 623 (630)
+
T Consensus 330 s 330 (402)
T 2aq5_A 330 N 330 (402)
T ss_dssp G
T ss_pred e
Confidence 4
No 100
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.96 E-value=8.5e-28 Score=248.60 Aligned_cols=223 Identities=18% Similarity=0.167 Sum_probs=180.8
Q ss_pred CCccCCEEEEEEcCCCCeEEeecCCC-----C--C------ccccCCcceEEEeecCC----CeEEEecCCcEEEEEeCC
Q 006825 377 GSWFKSIRTVASSVTGHKERRSSDER-----D--T------SSEKGGRRSSSATDDSQ----DVSFHGQERVRVRQYGKS 439 (630)
Q Consensus 377 ~gH~~~V~sVAfSpdG~~lasgS~D~-----d--t------~s~~gh~~~Vsa~~~s~----d~l~Sgs~Dg~VriWd~~ 439 (630)
.+|.+.|++|+|+|+|++|++++.|+ + . ..+.+|...|.+++|++ ..+++++.|++|++||..
T Consensus 10 ~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~ 89 (316)
T 3bg1_A 10 TSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREE 89 (316)
T ss_dssp ----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCS
T ss_pred ccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECC
Confidence 39999999999999999999999997 2 1 23679999999999975 239999999999999997
Q ss_pred CCcccceeeeeEecccCcCEEEEEEccC--CCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCC---
Q 006825 440 CKDLTALYKCQEIQAHNGSIWSIKFSLD--GRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE--- 514 (630)
Q Consensus 440 ~~el~~~~~v~tL~gHt~~V~sVaFSpD--G~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpd--- 514 (630)
+++. ..+.++.+|...|++|+|+|+ |.+|++|+.|++|+|||+..+..... .....+|...|.+++|+|+
T Consensus 90 ~~~~---~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~--~~~~~~h~~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 90 NGTW---EKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEV--KKINNAHTIGCNAVSWAPAVVP 164 (316)
T ss_dssp SSCC---CEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEE--CCBTTSSSSCBCCCEECCCCCC
T ss_pred CCcc---eEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcce--eeeeccccCCcceEEEccccCC
Confidence 6542 245678999999999999998 88999999999999999987642211 1124789999999999997
Q ss_pred --------------CCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCC-C---CceEEeccCCCCEEEEEEc
Q 006825 515 --------------PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS-D---KPICSFQGHLDDVLDLSWS 576 (630)
Q Consensus 515 --------------g~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdls-g---k~l~tL~GHs~~V~sLafS 576 (630)
+.+|++++.|++| ++|++. + +++.+|.+|...|++++|+
T Consensus 165 ~~~~~~~~~~~~~~~~~l~sgs~D~~v-----------------------~lWd~~~~~~~~~~~~l~~h~~~V~~v~~s 221 (316)
T 3bg1_A 165 GSLIDHPSGQKPNYIKRFASGGCDNLI-----------------------KLWKEEEDGQWKEEQKLEAHSDWVRDVAWA 221 (316)
T ss_dssp ------CCSCCCCCCCBEECCBTTSBC-----------------------CEEEECTTSCEEEEECCBCCSSCEEEEECC
T ss_pred ccccccccccCccccceEEEecCCCeE-----------------------EEEEeCCCCccceeeecccCCCceEEEEec
Confidence 4689999999999 677763 2 3667889999999999999
Q ss_pred CC-----CeEEEEECCCcEEEEeCCCC---c-EEEEEe-cCCceEEEE-cCCCcEEEEecce
Q 006825 577 KS-----QHLLSSSMDKTVRLWHLSSK---T-CLKIFS-HSDYDISLV-DRLMLRFAYGAFL 627 (630)
Q Consensus 577 Pd-----~~LaSgS~DgtVrIWDl~tg---~-~l~t~~-H~~~V~sVa-s~~~~~lAsgs~~ 627 (630)
|+ .+|++++.|++|+||++.+. + ....+. |...|++++ +|++..|++++.+
T Consensus 222 p~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D 283 (316)
T 3bg1_A 222 PSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGD 283 (316)
T ss_dssp CCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESS
T ss_pred CCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCC
Confidence 96 57999999999999999862 2 223344 899999999 8999999888654
No 101
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.95 E-value=3.6e-27 Score=250.89 Aligned_cols=296 Identities=11% Similarity=0.119 Sum_probs=206.9
Q ss_pred ceeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCc
Q 006825 260 SMSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHS 339 (630)
Q Consensus 260 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs 339 (630)
.|.+||||++| +++..++.++||++..++...... .+ + ++....+.||.
T Consensus 33 ~v~~s~~g~~l--------------a~g~~dg~v~iw~~~~~~~~~~~~---~~-----------~---~~~~~~~~~h~ 81 (447)
T 3dw8_B 33 TVEFNHSGELL--------------ATGDKGGRVVIFQQEQENKIQSHS---RG-----------E---YNVYSTFQSHE 81 (447)
T ss_dssp EEEECSSSSEE--------------EEEETTSEEEEEEECC-----CCC---CC-----------C---EEEEEEEECCC
T ss_pred EEEECCCCCEE--------------EEEcCCCeEEEEEecCCCCCCccc---cc-----------c---eeEeccccccc
Confidence 47889999998 555667788888887765321111 01 0 11225677888
Q ss_pred ------------cceeEEEeec-----ceEeecCCCccEecccCCCCcee------------------------------
Q 006825 340 ------------PIVQELMRRQ-----NVEEGNKDSFDLNNNGSSGGGMK------------------------------ 372 (630)
Q Consensus 340 ------------~~V~~Lafs~-----~laSgS~D~tvr~vWD~~tG~~~------------------------------ 372 (630)
..|.+|+|.| .+++++.|++++ +||+.++...
T Consensus 82 ~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~-iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 160 (447)
T 3dw8_B 82 PEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIK-LWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPM 160 (447)
T ss_dssp CEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEE-EEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEE
T ss_pred ccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEE-EEecccccCCcceecccCccccccCcccccceEeccccch
Confidence 8899999997 489999999999 9999875542
Q ss_pred ---------EEecCCccCCEEEEEEcCCCCeEEeecCCC-----CCc--------------cccCCcceEEEeecCCCe-
Q 006825 373 ---------SKKKGSWFKSIRTVASSVTGHKERRSSDER-----DTS--------------SEKGGRRSSSATDDSQDV- 423 (630)
Q Consensus 373 ---------~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-----dt~--------------s~~gh~~~Vsa~~~s~d~- 423 (630)
..+..+|...|.+++|+|+|++++++ .|+ +.. ...+|...|.++.+++++
T Consensus 161 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 239 (447)
T 3dw8_B 161 DLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSC 239 (447)
T ss_dssp EEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCT
T ss_pred heeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCC
Confidence 23334899999999999999999999 565 221 255899999999999875
Q ss_pred --EEEecCCcEEEEEeCCCCcccceeeeeEecccCc------------CEEEEEEccCCCEEEEEeCCCcEEEEECcC-C
Q 006825 424 --SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNG------------SIWSIKFSLDGRYLASAGEDCVIHVWQVVE-S 488 (630)
Q Consensus 424 --l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~------------~V~sVaFSpDG~~LASgS~DgtIrVWDl~t-g 488 (630)
+++|+.|++|++||+..++... ..+..+.+|.. .|.+++|+|+|++|++++. ++|+|||+.+ +
T Consensus 240 ~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~ 317 (447)
T 3dw8_B 240 NTFVYSSSKGTIRLCDMRASALCD-RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMEN 317 (447)
T ss_dssp TEEEEEETTSCEEEEETTTCSSSC-TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCS
T ss_pred cEEEEEeCCCeEEEEECcCCcccc-ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCc
Confidence 9999999999999998765311 11467788876 9999999999999999999 9999999987 6
Q ss_pred ceeeeeecccccCcccc---------------eEEEEECCCCCEEEEeeCCCeeeeecccccccccccccC------ccc
Q 006825 489 ERKGELLEKQEDGHLNM---------------LLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLD------HMV 547 (630)
Q Consensus 489 ~~~~~l~~~~~~gh~~~---------------V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d------~~i 547 (630)
+.+..+ .+|... ++.++|+|++.+|++++.|+.|++|+............. ...
T Consensus 318 ~~~~~~-----~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 392 (447)
T 3dw8_B 318 RPVETY-----QVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVL 392 (447)
T ss_dssp SCSCCE-----ESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBC
T ss_pred ccccee-----eccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeeccccccccccc
Confidence 666664 445321 334999999999999999999988876553221100000 000
Q ss_pred cccEEEeCC--C-Cce-EEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCC
Q 006825 548 VPETVFALS--D-KPI-CSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLS 596 (630)
Q Consensus 548 ~~~~Vwdls--g-k~l-~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~ 596 (630)
.+..+.... . ..+ .....+...|..++|+|+ .+||+++.++ ++||..+
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 393 KPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp CCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred CCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence 000111110 0 000 001235668999999999 8888888776 8888754
No 102
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.5e-27 Score=264.47 Aligned_cols=279 Identities=9% Similarity=-0.023 Sum_probs=205.0
Q ss_pred CceeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEE--------EEeeecCCCceeEEEEcCCCceEeee
Q 006825 259 DSMSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEF--------VVNEIQEDGTWKKVKEVGTGRQLTIE 330 (630)
Q Consensus 259 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~--------~v~e~~~dg~~~~l~dv~TG~~lt~e 330 (630)
.+|.+||||++|+.+|+ |.+++ +...++.+ .|.. ..+| ....|++.+++..
T Consensus 19 ~sv~~SpDG~~iASas~--------------D~TV~--d~~~~~~l~gh~~~v~~V~F-sPdg-~~~~~~~~~~~~~--- 77 (588)
T 2j04_A 19 NNLTWARDGTLYLTTFP--------------DISIG--QPKYAKDINCNSKNLFHVKE-FPLE-FENKLDFELAQQN--- 77 (588)
T ss_dssp CCEEECTTSCEEEECSS--------------SEEEE--EECCCSCCSSBGGGTEEEEE-ECCC-CCCTTTTSCCCSS---
T ss_pred EEEEECCCCCEEEEEcC--------------Cceee--cccccceecCCCccEEEEEE-CCCC-CcceEEEEeCCCc---
Confidence 45899999999955554 33333 33333322 2211 2223 2335556655543
Q ss_pred cceeee-cCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccC-----CEEEEEEcCCCCeEEeecCC
Q 006825 331 EFEMCV-GHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFK-----SIRTVASSVTGHKERRSSDE 401 (630)
Q Consensus 331 ef~~l~-GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~-----~V~sVAfSpdG~~lasgS~D 401 (630)
..+. +|.+.|..++|+| .||+++.|++++ +||..+ ++..+. |.. .|.+|||||||++|+
T Consensus 78 --~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~-iwd~~~--~l~~l~--~~~~~~~~sv~svafSPDG~~LA----- 145 (588)
T 2j04_A 78 --GLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVS-VFKDNK--MLTNLD--SKGNLSSRTYHCFEWNPIESSIV----- 145 (588)
T ss_dssp --CSSTTSCSCCEEEEEECSSSSCEEEEETTSCEE-EEETTE--EEEECC--CSSCSTTTCEEEEEECSSSSCEE-----
T ss_pred --eEeecCCCCcEEEEEECCCCCEEEEEeCCCcEE-EEeCCc--eeeecc--CCCccccccEEEEEEcCCCCEEE-----
Confidence 2222 6789999999999 799999999999 999654 555555 443 699999999998885
Q ss_pred CCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccce--eeeeEe----cccCcCEEEEEEccCCCEEEEEe
Q 006825 402 RDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTAL--YKCQEI----QAHNGSIWSIKFSLDGRYLASAG 475 (630)
Q Consensus 402 ~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~--~~v~tL----~gHt~~V~sVaFSpDG~~LASgS 475 (630)
+|+.|++|++|+...+.+... ..+.++ .+|...|.+++|+||| |++++
T Consensus 146 ------------------------sgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass 199 (588)
T 2j04_A 146 ------------------------VGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAAL 199 (588)
T ss_dssp ------------------------EEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEE
T ss_pred ------------------------EEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEe
Confidence 556778999999987653221 135666 7888999999999999 88899
Q ss_pred CCCcEEEEECcCCcee---eeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEE
Q 006825 476 EDCVIHVWQVVESERK---GELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETV 552 (630)
Q Consensus 476 ~DgtIrVWDl~tg~~~---~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~V 552 (630)
.|++|++|++.++... .++ ..+|...|..++|+ +..+++++ ++.| ++
T Consensus 200 ~D~tVrlWd~~~~~~~~~~~tL----~~~h~~~V~svaFs--g~~LASa~-~~tI-----------------------kL 249 (588)
T 2j04_A 200 SNNSVFSMTVSASSHQPVSRMI----QNASRRKITDLKIV--DYKVVLTC-PGYV-----------------------HK 249 (588)
T ss_dssp TTCCEEEECCCSSSSCCCEEEE----ECCCSSCCCCEEEE--TTEEEEEC-SSEE-----------------------EE
T ss_pred CCCeEEEEECCCCccccceeee----cccccCcEEEEEEE--CCEEEEEe-CCeE-----------------------EE
Confidence 9999999999887732 232 24788899999999 68888886 6888 89
Q ss_pred EeCCCCceEEec-cCCCCEEEEEE--cCC-CeEEEEECCCcEEEEeCCC-----------------------CcEEEEEe
Q 006825 553 FALSDKPICSFQ-GHLDDVLDLSW--SKS-QHLLSSSMDKTVRLWHLSS-----------------------KTCLKIFS 605 (630)
Q Consensus 553 wdlsgk~l~tL~-GHs~~V~sLaf--SPd-~~LaSgS~DgtVrIWDl~t-----------------------g~~l~t~~ 605 (630)
|++.+..+..+. ||...|..++| +|+ ..|++++.||+ |||.... +..+..+.
T Consensus 250 Wd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~ 328 (588)
T 2j04_A 250 IDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYE 328 (588)
T ss_dssp EETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSC
T ss_pred EECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeec
Confidence 998666664444 99999999999 999 78999999999 9998631 11122222
Q ss_pred cCCceEEEE-cCCCcEEEEecce
Q 006825 606 HSDYDISLV-DRLMLRFAYGAFL 627 (630)
Q Consensus 606 H~~~V~sVa-s~~~~~lAsgs~~ 627 (630)
+...|++|+ +|++..+|+++.+
T Consensus 329 ~~~~I~~va~SPdG~~lA~~~~i 351 (588)
T 2j04_A 329 TTLVIHGISLSPDGYSIAIVYDM 351 (588)
T ss_dssp CEEEEEEEEECTTSSEEEEEEEE
T ss_pred cceEEEEEEECCCCCEEEEEEec
Confidence 444589999 9999999988754
No 103
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.95 E-value=5.2e-27 Score=250.63 Aligned_cols=281 Identities=11% Similarity=0.073 Sum_probs=194.8
Q ss_pred ceeecC-CCCcccCCCccccccCCCCCcccccccEEEEECCC---------------------------CcEEEEeeecC
Q 006825 260 SMSING-NGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDN---------------------------GKEFVVNEIQE 311 (630)
Q Consensus 260 ~~~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Ldd---------------------------G~~~~v~e~~~ 311 (630)
+++++| ||++| +++..++.++||++.. |+.+++. +.
T Consensus 68 ~~~~s~~~~~~l--------------~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--s~ 131 (437)
T 3gre_A 68 SSAVSPGETPYL--------------ITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVS--SK 131 (437)
T ss_dssp EEEEECSSSCEE--------------EEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEE--ET
T ss_pred EEEECCCCCCEE--------------EEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEE--eC
Confidence 489999 99999 4444556666666544 3333322 23
Q ss_pred CCceeEEEEcC---CCceEeeecc---eeee--c--CccceeEEEee--c---ceEeecCCCccEecccCCCCceeEEec
Q 006825 312 DGTWKKVKEVG---TGRQLTIEEF---EMCV--G--HSPIVQELMRR--Q---NVEEGNKDSFDLNNNGSSGGGMKSKKK 376 (630)
Q Consensus 312 dg~~~~l~dv~---TG~~lt~eef---~~l~--G--Hs~~V~~Lafs--~---~laSgS~D~tvr~vWD~~tG~~~~~lk 376 (630)
|| ..++|++. +|+.+..... ..+. . |...+.++.+. + .+++|+.|++++ +||+.+++.+.++.
T Consensus 132 dg-~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~-iwd~~~~~~~~~~~ 209 (437)
T 3gre_A 132 DG-QIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVI-IFDIRTLERLQIIE 209 (437)
T ss_dssp TS-EEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEE-EEETTTCCEEEEEE
T ss_pred CC-EEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEE-EEeCCCCeeeEEEc
Confidence 44 36789884 6766622111 1111 1 44556666633 3 799999999999 99999999999998
Q ss_pred CC--ccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEec-
Q 006825 377 GS--WFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQ- 453 (630)
Q Consensus 377 ~g--H~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~- 453 (630)
+ |...|.+++|+|+|++++ +|+.|++|++||+..++ ++.++.
T Consensus 210 -~~~h~~~v~~~~~s~~~~~l~-----------------------------s~~~dg~i~iwd~~~~~-----~~~~~~~ 254 (437)
T 3gre_A 210 -NSPRHGAVSSICIDEECCVLI-----------------------------LGTTRGIIDIWDIRFNV-----LIRSWSF 254 (437)
T ss_dssp -CCGGGCCEEEEEECTTSCEEE-----------------------------EEETTSCEEEEETTTTE-----EEEEEBC
T ss_pred -cCCCCCceEEEEECCCCCEEE-----------------------------EEcCCCeEEEEEcCCcc-----EEEEEec
Confidence 6 999999999999988774 55677889999998754 456665
Q ss_pred ccCcCEEEEEEc----cCCCEEEEEeCCCcEEEEECcCCceeeeeecc-------------------cccC--cccceEE
Q 006825 454 AHNGSIWSIKFS----LDGRYLASAGEDCVIHVWQVVESERKGELLEK-------------------QEDG--HLNMLLL 508 (630)
Q Consensus 454 gHt~~V~sVaFS----pDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~-------------------~~~g--h~~~V~s 508 (630)
+|...|.+++|+ +++++|++|+.|++|+|||+.+++++..+... .+.+ |...|.+
T Consensus 255 ~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~ 334 (437)
T 3gre_A 255 GDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALST 334 (437)
T ss_dssp TTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCC
T ss_pred CCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEE
Confidence 788899999655 57889999999999999999998877665311 0122 7788999
Q ss_pred EEECCCCCEEEEeeCCCeeeeecccccccccccccC----ccccc-----------cEEEeCCCCceEEeccCCCCEEEE
Q 006825 509 ANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLD----HMVVP-----------ETVFALSDKPICSFQGHLDDVLDL 573 (630)
Q Consensus 509 vafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d----~~i~~-----------~~Vwdlsgk~l~tL~GHs~~V~sL 573 (630)
++|+ ++.+|++++.|+.|++|+.........+... ..+.. ..+....+..+..+..|.+.|+++
T Consensus 335 l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i 413 (437)
T 3gre_A 335 ISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSI 413 (437)
T ss_dssp EEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEE
T ss_pred EEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeE
Confidence 9999 7899999999999999997764433322211 00000 000011334445556799999999
Q ss_pred EEcCC---CeEEEEECCCcEEEEe
Q 006825 574 SWSKS---QHLLSSSMDKTVRLWH 594 (630)
Q Consensus 574 afSPd---~~LaSgS~DgtVrIWD 594 (630)
+|+++ .+|+||+.||+|+||+
T Consensus 414 ~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 414 STCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EEEESSSSEEEEEEETTSCEEEEC
T ss_pred eeeccCCceEEEEEcCCceEEEeC
Confidence 99975 5899999999999995
No 104
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.95 E-value=3.9e-26 Score=246.10 Aligned_cols=236 Identities=14% Similarity=0.155 Sum_probs=199.6
Q ss_pred eeeecCccceeEEEeec----ceEeecCCCccEecccCCC----------CceeEEecCCccCCEEEEEEcCCCC-eEEe
Q 006825 333 EMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSG----------GGMKSKKKGSWFKSIRTVASSVTGH-KERR 397 (630)
Q Consensus 333 ~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~t----------G~~~~~lk~gH~~~V~sVAfSpdG~-~las 397 (630)
..+.+|...|..|+|.| .+++++.|++|+ +||+.+ +..+.++. +|...|.+++|+|++. +|
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~-vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l-- 197 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVL-VFDYTKHPSKPEPSGECQPDLRLR-GHQKEGYGLSWNPNLNGYL-- 197 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEE-EEEGGGSCSSCCTTCCCCCSEEEE-CCSSCCCCEEECTTSTTEE--
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEE-EEECCCcccccCccccCCCcEEec-CCCCCeEEEEeCCCCCCeE--
Confidence 46788999999999998 699999999999 999987 67888888 9999999999999876 44
Q ss_pred ecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcc--cceeeeeEecccCcCEEEEEEcc-CCCEEEEE
Q 006825 398 SSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDL--TALYKCQEIQAHNGSIWSIKFSL-DGRYLASA 474 (630)
Q Consensus 398 gS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el--~~~~~v~tL~gHt~~V~sVaFSp-DG~~LASg 474 (630)
++|+.|++|++|++..... ........+.+|...|.+|+|+| ++.+|+++
T Consensus 198 ---------------------------~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~ 250 (430)
T 2xyi_A 198 ---------------------------LSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSV 250 (430)
T ss_dssp ---------------------------EEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEE
T ss_pred ---------------------------EEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEE
Confidence 6677788999999976322 11223567889999999999999 78899999
Q ss_pred eCCCcEEEEECcCCc---eeeeeecccccCcccceEEEEECCCCC-EEEEeeCCCeeeeecccccccccccccCcccccc
Q 006825 475 GEDCVIHVWQVVESE---RKGELLEKQEDGHLNMLLLANGSPEPT-SLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPE 550 (630)
Q Consensus 475 S~DgtIrVWDl~tg~---~~~~l~~~~~~gh~~~V~svafSpdg~-~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~ 550 (630)
+.|+.|++||+.++. .+.. ...|...|.+++|+|++. ++++++.|+.|
T Consensus 251 ~~dg~i~i~d~~~~~~~~~~~~-----~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v----------------------- 302 (430)
T 2xyi_A 251 ADDQKLMIWDTRNNNTSKPSHT-----VDAHTAEVNCLSFNPYSEFILATGSADKTV----------------------- 302 (430)
T ss_dssp ETTSEEEEEETTCSCSSSCSEE-----EECCSSCEEEEEECSSCTTEEEEEETTSEE-----------------------
T ss_pred eCCCeEEEEECCCCCCCcceeE-----eecCCCCeEEEEeCCCCCCEEEEEeCCCeE-----------------------
Confidence 999999999999773 3333 368889999999999987 68899999999
Q ss_pred EEEeCC--CCceEEeccCCCCEEEEEEcCC--CeEEEEECCCcEEEEeCCC--------------CcEEEEEe-cCCceE
Q 006825 551 TVFALS--DKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSS--------------KTCLKIFS-HSDYDI 611 (630)
Q Consensus 551 ~Vwdls--gk~l~tL~GHs~~V~sLafSPd--~~LaSgS~DgtVrIWDl~t--------------g~~l~t~~-H~~~V~ 611 (630)
++|++. ++++.++.+|...|++++|+|+ .+|++++.|++|+|||+.. .+++..+. |...|+
T Consensus 303 ~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 382 (430)
T 2xyi_A 303 ALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKIS 382 (430)
T ss_dssp EEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEE
T ss_pred EEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCce
Confidence 788873 5778999999999999999998 4799999999999999987 36777776 999999
Q ss_pred EEE-cCCCc-EEEEecce
Q 006825 612 SLV-DRLML-RFAYGAFL 627 (630)
Q Consensus 612 sVa-s~~~~-~lAsgs~~ 627 (630)
+++ ++.+. .+++++..
T Consensus 383 ~~~~~p~~~~~l~s~s~d 400 (430)
T 2xyi_A 383 DFSWNPNEPWIICSVSED 400 (430)
T ss_dssp EEEECSSSTTEEEEEETT
T ss_pred EEEECCCCCCEEEEEECC
Confidence 999 77776 67776543
No 105
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.95 E-value=3.5e-27 Score=251.94 Aligned_cols=254 Identities=7% Similarity=-0.132 Sum_probs=169.7
Q ss_pred eecCccceeEEEeec---ceEeecCCCccEecccCCCCceeE-----EecCCccCCEEEEEEcC--------CCCeEEee
Q 006825 335 CVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKS-----KKKGSWFKSIRTVASSV--------TGHKERRS 398 (630)
Q Consensus 335 l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~-----~lk~gH~~~V~sVAfSp--------dG~~lasg 398 (630)
..+|.+.+....+.+ .||+|+.|+++| +||+.++.... .+. ||...|++|+|+| ||++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~las~~~d~~v~-lw~~~~~~~~~~~~~~~~~-gH~~~v~~v~~~p~~~~~~~~d~~~---- 158 (393)
T 4gq1_A 85 ENLHDGDGNVNSSPVYSLFLACVCQDNTVR-LIITKNETIITQHVLGGKS-GHHNFVNDIDIADVYSADNRLAEQV---- 158 (393)
T ss_dssp CC----------CCEEEEEEEEEETTSCEE-EEEEETTEEEEEEEECTTT-SCSSCEEEEEEEEEECTTCSEEEEE----
T ss_pred ccccCCCcceeecCCCCCEEEEEeCCCcEE-EEECCCCccceeeeecccC-CCCCceEEEEEccccccccCCCCCE----
Confidence 345666666666655 799999999999 99999987543 244 9999999999998 3333
Q ss_pred cCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCC-CEEEEEeCC
Q 006825 399 SDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDG-RYLASAGED 477 (630)
Q Consensus 399 S~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG-~~LASgS~D 477 (630)
+++++.|++||+||+.... ++..+.+|...|.+++|+|++ ++|++|+.|
T Consensus 159 -------------------------las~s~D~tv~~Wd~~~~~-----~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d 208 (393)
T 4gq1_A 159 -------------------------IASVGDDCTLIIWRLTDEG-----PILAGYPLSSPGISVQFRPSNPNQLIVGERN 208 (393)
T ss_dssp -------------------------EEEEETTSEEEEEEEETTE-----EEEEEEECSSCEEEEEEETTEEEEEEEEETT
T ss_pred -------------------------EEEEECCCeEEEEECCCCc-----eeeeecCCCCCcEEEEECCCCCceEEecCCC
Confidence 5777888899999986553 456678899999999999987 589999999
Q ss_pred CcEEEEECcCCceeeeeec--------------------ccccCcccceEEEEEC-CCCCEEEEeeCCCeeeeecccccc
Q 006825 478 CVIHVWQVVESERKGELLE--------------------KQEDGHLNMLLLANGS-PEPTSLSPKHLDNHLEKKRRGRSI 536 (630)
Q Consensus 478 gtIrVWDl~tg~~~~~l~~--------------------~~~~gh~~~V~svafS-pdg~~lasgs~Dg~I~i~~~~~~~ 536 (630)
++|+|||+.+++....+.. ....+|...+.++.|. |+++.+++++.|+++++|+.....
T Consensus 209 ~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~ 288 (393)
T 4gq1_A 209 GNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANN 288 (393)
T ss_dssp SEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC----
T ss_pred CEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCC
Confidence 9999999988765433210 1124677788888886 899999999999999777654322
Q ss_pred cccccccCccccccEEEeCC-CCceEEeccCCCCEEEEEEcCC---CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceE
Q 006825 537 NRKSLSLDHMVVPETVFALS-DKPICSFQGHLDDVLDLSWSKS---QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDI 611 (630)
Q Consensus 537 ~~~s~s~d~~i~~~~Vwdls-gk~l~tL~GHs~~V~sLafSPd---~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~ 611 (630)
....+.... ..++... ......+..+...+. ..|+|. .++++|+.|++|+|||+.+++++..+. |...|+
T Consensus 289 ~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~ 363 (393)
T 4gq1_A 289 DYNEISDST----MKLGPKNLLPNVQGISLFPSLLG-ACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIV 363 (393)
T ss_dssp -------------------CCSCSEEEECSSCCSSC-CEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEE
T ss_pred CCceEeeec----CccccEEEccccccccccCccee-EEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEE
Confidence 111111000 0111111 112223333333333 344442 356788899999999999999888776 999999
Q ss_pred EEE-cCCCcEEEEecceec
Q 006825 612 SLV-DRLMLRFAYGAFLNV 629 (630)
Q Consensus 612 sVa-s~~~~~lAsgs~~nI 629 (630)
+|+ +|++..||+++...+
T Consensus 364 svafspdG~~LA~as~~Gv 382 (393)
T 4gq1_A 364 DFCWHQDGSHLAIATEGSV 382 (393)
T ss_dssp EEEECTTSSEEEEEESSEE
T ss_pred EEEEcCCCCEEEEEeCCCe
Confidence 999 999999999976554
No 106
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.95 E-value=1.3e-25 Score=229.83 Aligned_cols=225 Identities=13% Similarity=0.017 Sum_probs=190.6
Q ss_pred eeeecCccceeEEEeec----ceEeecCCCccEecccC-CCCceeEEecCC--ccCCEEEEEEcCCCCeEEeecCCC---
Q 006825 333 EMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGS-SGGGMKSKKKGS--WFKSIRTVASSVTGHKERRSSDER--- 402 (630)
Q Consensus 333 ~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~-~tG~~~~~lk~g--H~~~V~sVAfSpdG~~lasgS~D~--- 402 (630)
..+.+|...|.+++|+| .|++|+.|++++ +||+ .+++. ..+. + |...|.+++|+| +.++++++.|+
T Consensus 50 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~-~wd~~~~~~~-~~~~-~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~ 125 (342)
T 1yfq_A 50 LQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL-KVDLIGSPSF-QALT-NNEANLGICRICKYG-DDKLIAASWDGLIE 125 (342)
T ss_dssp EEEEECSSCEEEEEEEESSSEEEEEEETTSCEE-EECSSSSSSE-EECB-SCCCCSCEEEEEEET-TTEEEEEETTSEEE
T ss_pred eeeeecCCceEEEEECCCCCcEEEEEcCCCeEE-EEEeccCCce-Eecc-ccCCCCceEEEEeCC-CCEEEEEcCCCeEE
Confidence 34558999999999987 499999999999 9999 87755 5666 7 999999999999 99999999887
Q ss_pred --C--C---------cc---ccCCcceEEEeecCCCeEEEecCCcEEEEEeCCC-CcccceeeeeEecccCcCEEEEEEc
Q 006825 403 --D--T---------SS---EKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSC-KDLTALYKCQEIQAHNGSIWSIKFS 465 (630)
Q Consensus 403 --d--t---------~s---~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~-~el~~~~~v~tL~gHt~~V~sVaFS 465 (630)
+ + .. ...|...|.++.+.++.+++++.++.|++|++.. .... .......|...|.+++|+
T Consensus 126 iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~---~~~~~~~~~~~i~~i~~~ 202 (342)
T 1yfq_A 126 VIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDN---GTIEESGLKYQIRDVALL 202 (342)
T ss_dssp EECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCC---CEEEECSCSSCEEEEEEC
T ss_pred EEcccccccccccccCCeeeEEeeCCceEEEEecCCcEEEEeCCCeEEEEECCcccccc---ceeeecCCCCceeEEEEC
Confidence 1 1 11 2237888999999999999999999999999976 4321 233456789999999999
Q ss_pred c-CCCEEEEEeCCCcEEEEECcCC------ceeeeeecccccCc---------ccceEEEEECCCCCEEEEeeCCCeeee
Q 006825 466 L-DGRYLASAGEDCVIHVWQVVES------ERKGELLEKQEDGH---------LNMLLLANGSPEPTSLSPKHLDNHLEK 529 (630)
Q Consensus 466 p-DG~~LASgS~DgtIrVWDl~tg------~~~~~l~~~~~~gh---------~~~V~svafSpdg~~lasgs~Dg~I~i 529 (630)
| ++++|++++.|+.|+||++... .....+ ..| ...|.+++|+|++.+|++++.|+.|
T Consensus 203 ~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i-- 275 (342)
T 1yfq_A 203 PKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF-----RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGII-- 275 (342)
T ss_dssp SGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEE-----ECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCE--
T ss_pred CCCCCEEEEEecCCcEEEEEEcCCCcccccccceee-----ecccccccccccceeEEEEEEcCCCCEEEEecCCceE--
Confidence 9 9999999999999999999876 444443 344 4499999999999999999999999
Q ss_pred ecccccccccccccCccccccEEEeC-CCCceEEeccC-CCCEEEEEEcCC-CeEEEEECCCc-EEEEe
Q 006825 530 KRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGH-LDDVLDLSWSKS-QHLLSSSMDKT-VRLWH 594 (630)
Q Consensus 530 ~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GH-s~~V~sLafSPd-~~LaSgS~Dgt-VrIWD 594 (630)
++|++ +++++.++.+| ...|++++ |+ .+|++++.|++ .+.|.
T Consensus 276 ---------------------~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 276 ---------------------SCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp ---------------------EEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred ---------------------EEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCccccccc
Confidence 88888 68889999998 99999999 88 99999999999 66665
No 107
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.95 E-value=9e-26 Score=227.96 Aligned_cols=230 Identities=17% Similarity=0.196 Sum_probs=190.2
Q ss_pred EecCCccCCEEEEEEcCCCCeEEeecCCC-------CCc--------cccCCcceEEEeecCC--Ce--EEEecCCcEEE
Q 006825 374 KKKGSWFKSIRTVASSVTGHKERRSSDER-------DTS--------SEKGGRRSSSATDDSQ--DV--SFHGQERVRVR 434 (630)
Q Consensus 374 ~lk~gH~~~V~sVAfSpdG~~lasgS~D~-------dt~--------s~~gh~~~Vsa~~~s~--d~--l~Sgs~Dg~Vr 434 (630)
.++ +|...|++++|+|+|++|++++.|+ ++. .+.+|...|.+++|++ ++ +++++.|++|+
T Consensus 6 ~~~-gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 6 FDS-GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp EEC-CCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred cCc-ccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 345 9999999999999999999999887 211 1468999999999987 24 99999999999
Q ss_pred EEeCCCCccc----ceeeeeEecccCcCEEEEEEccC--CCEEEEEeCCCcEEEEECcCCceeeeee--------ccccc
Q 006825 435 QYGKSCKDLT----ALYKCQEIQAHNGSIWSIKFSLD--GRYLASAGEDCVIHVWQVVESERKGELL--------EKQED 500 (630)
Q Consensus 435 iWd~~~~el~----~~~~v~tL~gHt~~V~sVaFSpD--G~~LASgS~DgtIrVWDl~tg~~~~~l~--------~~~~~ 500 (630)
+|++..++.. ...++..+.+|...|.+++|+|+ +++|++++.|++|++||+.+++.+..+. .....
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 164 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence 9999775321 12356788999999999999999 9999999999999999998887654431 11123
Q ss_pred CcccceEEEEECCC---CCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCC--ceEEeccCCCCEEEEE
Q 006825 501 GHLNMLLLANGSPE---PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDK--PICSFQGHLDDVLDLS 574 (630)
Q Consensus 501 gh~~~V~svafSpd---g~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk--~l~tL~GHs~~V~sLa 574 (630)
+|...+.+++|+|+ +.++++++.++.+ .+|.. .++ .+..+.+|...|++++
T Consensus 165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~h~~~i~~~~ 221 (351)
T 3f3f_A 165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAI-----------------------IYQRGKDGKLHVAAKLPGHKSLIRSIS 221 (351)
T ss_dssp SCSCCCEEEEECCCSSSCCEEEEEETTEEE-----------------------EEEECTTSCEEEEEECCCCCSCEEEEE
T ss_pred CcccceeEEEeccCCCCCcEEEEecCCCcE-----------------------EEEccCCCceeeeeecCCCCcceeEEE
Confidence 67889999999997 9999999999988 44544 333 3778889999999999
Q ss_pred EcCC-----CeEEEEECCCcEEEEeCCCC----------------------------------------------cEEEE
Q 006825 575 WSKS-----QHLLSSSMDKTVRLWHLSSK----------------------------------------------TCLKI 603 (630)
Q Consensus 575 fSPd-----~~LaSgS~DgtVrIWDl~tg----------------------------------------------~~l~t 603 (630)
|+|+ .+|++|+.|++|+|||+.++ +++..
T Consensus 222 ~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (351)
T 3f3f_A 222 WAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSE 301 (351)
T ss_dssp ECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEE
T ss_pred ECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEE
Confidence 9998 38999999999999999875 67777
Q ss_pred Ee-cCCceEEEE-cCCCcEEEEecce
Q 006825 604 FS-HSDYDISLV-DRLMLRFAYGAFL 627 (630)
Q Consensus 604 ~~-H~~~V~sVa-s~~~~~lAsgs~~ 627 (630)
+. |...|++++ ++++..+++++.+
T Consensus 302 ~~~h~~~v~~~~~s~~~~~l~s~~~d 327 (351)
T 3f3f_A 302 HDDHNGEVWSVSWNLTGTILSSAGDD 327 (351)
T ss_dssp ECTTSSCEEEEEECSSSCCEEEEETT
T ss_pred EecccccEEEEEEcCCCCEEEEecCC
Confidence 77 999999999 8888888888754
No 108
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=8e-26 Score=233.33 Aligned_cols=229 Identities=18% Similarity=0.180 Sum_probs=188.1
Q ss_pred CceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-----CC--------ccccCCcceEEEeecCCC----eEEEecCCc
Q 006825 369 GGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-----DT--------SSEKGGRRSSSATDDSQD----VSFHGQERV 431 (630)
Q Consensus 369 G~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-----dt--------~s~~gh~~~Vsa~~~s~d----~l~Sgs~Dg 431 (630)
|+.+..++ +|...|.+++|+|+|++|++++.|+ +. ..+.+|...|.++.++++ .+++++.|+
T Consensus 1 G~~~~~~~-~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg 79 (379)
T 3jrp_A 1 GSMVVIAN-AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG 79 (379)
T ss_dssp ----CCEE-ECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred CCccEEec-CCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCC
Confidence 45566677 9999999999999999999999887 11 127789999999999854 399999999
Q ss_pred EEEEEeCCCCcccceeeeeEecccCcCEEEEEEccC--CCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEE
Q 006825 432 RVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLD--GRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLA 509 (630)
Q Consensus 432 ~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpD--G~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~sv 509 (630)
.|++||+..++. ..+..+.+|...|++++|+|+ +++|++++.|++|++||+.++.....+. ..+|...|.++
T Consensus 80 ~v~iwd~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---~~~~~~~v~~~ 153 (379)
T 3jrp_A 80 KVLIWKEENGRW---SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII---IDAHAIGVNSA 153 (379)
T ss_dssp CEEEEEEETTEE---EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEE---EECCTTCEEEE
T ss_pred EEEEEEcCCCce---eEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEE---ecCCCCceEEE
Confidence 999999876642 246778899999999999999 9999999999999999998875443321 46888999999
Q ss_pred EECC-------------CCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CC----CceEEeccCCCCEE
Q 006825 510 NGSP-------------EPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SD----KPICSFQGHLDDVL 571 (630)
Q Consensus 510 afSp-------------dg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sg----k~l~tL~GHs~~V~ 571 (630)
+|+| ++.++++++.|+.| ++|++ .+ .++..+.+|...|+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i-----------------------~i~d~~~~~~~~~~~~~~~~h~~~v~ 210 (379)
T 3jrp_A 154 SWAPATIEEDGEHNGTKESRKFVTGGADNLV-----------------------KIWKYNSDAQTYVLESTLEGHSDWVR 210 (379)
T ss_dssp EECCCC----------CTTCEEEEEETTSCE-----------------------EEEEEETTTTEEEEEEEECCCSSCEE
T ss_pred EEcCccccccccccCCCCCCEEEEEeCCCeE-----------------------EEEEecCCCcceeeEEEEecccCcEe
Confidence 9999 69999999999999 66666 23 24567889999999
Q ss_pred EEEEcCC----CeEEEEECCCcEEEEeCCCCc---EEEEEe---cCCceEEEE-cCCCcEEEEecce
Q 006825 572 DLSWSKS----QHLLSSSMDKTVRLWHLSSKT---CLKIFS---HSDYDISLV-DRLMLRFAYGAFL 627 (630)
Q Consensus 572 sLafSPd----~~LaSgS~DgtVrIWDl~tg~---~l~t~~---H~~~V~sVa-s~~~~~lAsgs~~ 627 (630)
+++|+|+ .+|++++.|++|+|||+.++. ....+. |...|++++ ++++..+++++.+
T Consensus 211 ~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d 277 (379)
T 3jrp_A 211 DVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGD 277 (379)
T ss_dssp EEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESS
T ss_pred EEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCC
Confidence 9999997 589999999999999999874 223332 889999999 8888888877543
No 109
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=8.7e-26 Score=235.20 Aligned_cols=216 Identities=9% Similarity=0.000 Sum_probs=166.6
Q ss_pred CCceeEEEEcCCCceEeeecceeeecCccceeEEEeecceEeecCCCccEecccCC---------CCceeEEecCCccCC
Q 006825 312 DGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQNVEEGNKDSFDLNNNGSS---------GGGMKSKKKGSWFKS 382 (630)
Q Consensus 312 dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~~laSgS~D~tvr~vWD~~---------tG~~~~~lk~gH~~~ 382 (630)
||. .++|++.+|+.+ .++. ...|..+.|.|.+++++.|++++ +|+.. +++.+.....+|...
T Consensus 57 Dg~-v~iwd~~~~~~~-----~~~~--~~~v~~~~~~~~~~s~s~D~~i~-~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (343)
T 3lrv_A 57 DGA-LHFTQLKDSKTI-----TTIT--TPNPRTGGEHPAIISRGPCNRLL-LLYPGNQITILDSKTNKVLREIEVDSANE 127 (343)
T ss_dssp TTE-EEEEEESSSSCE-----EEEE--EECCCTTCCCCSEEEECSTTEEE-EEETTTEEEEEETTTCCEEEEEECCCSSC
T ss_pred CCc-EEEEECCCCcEE-----EEEe--cCCceeeeeCCceEEecCCCeEE-EEEccCceEEeecCCcceeEEeecCCCCC
Confidence 444 557777777666 3332 46788888888899999999999 99654 666666666688899
Q ss_pred EEEEEEcC--CCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEe-cccCcCE
Q 006825 383 IRTVASSV--TGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEI-QAHNGSI 459 (630)
Q Consensus 383 V~sVAfSp--dG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL-~gHt~~V 459 (630)
|.+++|+| +|+++ ++++.|++|++||+.+++. .+.+ ..|...|
T Consensus 128 v~~~~~~~~~~~~~l-----------------------------~s~s~dg~i~~wd~~~~~~-----~~~~~~~~~~~i 173 (343)
T 3lrv_A 128 IIYMYGHNEVNTEYF-----------------------------IWADNRGTIGFQSYEDDSQ-----YIVHSAKSDVEY 173 (343)
T ss_dssp EEEEECCC---CCEE-----------------------------EEEETTCCEEEEESSSSCE-----EEEECCCSSCCC
T ss_pred EEEEEcCCCCCCCEE-----------------------------EEEeCCCcEEEEECCCCcE-----EEEEecCCCCce
Confidence 99999999 88766 4556778899999987653 3334 3456689
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEECcCCcee-eeeecccccC-cccceEEEEECCCCCEEEEeeCCCeeeeeccccccc
Q 006825 460 WSIKFSLDGRYLASAGEDCVIHVWQVVESERK-GELLEKQEDG-HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSIN 537 (630)
Q Consensus 460 ~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~-~~l~~~~~~g-h~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~ 537 (630)
.+++|+|+|++||+|+.|++|+|||+.+++.+ ..+ .+ |...|.+++|+|++.+|++++.+ .|
T Consensus 174 ~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~-----~~~h~~~v~~l~fs~~g~~l~s~~~~-~v---------- 237 (343)
T 3lrv_A 174 SSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRF-----PVDEEAKIKEVKFADNGYWMVVECDQ-TV---------- 237 (343)
T ss_dssp CEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEEC-----CCCTTSCEEEEEECTTSSEEEEEESS-BE----------
T ss_pred EEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEE-----eccCCCCEEEEEEeCCCCEEEEEeCC-eE----------
Confidence 99999999999999999999999999998876 453 45 99999999999999999999844 88
Q ss_pred ccccccCccccccEEEeC-CCCceEEec---cCCCCEE--EEEEcCC-CeEEEEEC-CCcEEEEeCCCCc
Q 006825 538 RKSLSLDHMVVPETVFAL-SDKPICSFQ---GHLDDVL--DLSWSKS-QHLLSSSM-DKTVRLWHLSSKT 599 (630)
Q Consensus 538 ~~s~s~d~~i~~~~Vwdl-sgk~l~tL~---GHs~~V~--sLafSPd-~~LaSgS~-DgtVrIWDl~tg~ 599 (630)
++|++ +++.+.++. .|...+. +++|+|+ .+|++++. |+.|+||++....
T Consensus 238 -------------~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 238 -------------VCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKT 294 (343)
T ss_dssp -------------EEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred -------------EEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccc
Confidence 67776 444444333 3444454 6999999 99999999 9999999996653
No 110
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.94 E-value=7.8e-26 Score=241.50 Aligned_cols=221 Identities=11% Similarity=0.058 Sum_probs=162.4
Q ss_pred eEEEEcCCCceEeeecceeeecCccceeEEEeec-----------ceEeecCCCccEecccCCCCceeEEecCCccCCEE
Q 006825 316 KKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ-----------NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIR 384 (630)
Q Consensus 316 ~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~-----------~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~ 384 (630)
.+||+..+++..+...+..+.||+..|+.|+|+| .|||||.|+|+| |||+.++.++..+. +|...|.
T Consensus 113 v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~-~Wd~~~~~~~~~~~-~~~~~v~ 190 (393)
T 4gq1_A 113 VRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLI-IWRLTDEGPILAGY-PLSSPGI 190 (393)
T ss_dssp EEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEE-EEEEETTEEEEEEE-ECSSCEE
T ss_pred EEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEE-EEECCCCceeeeec-CCCCCcE
Confidence 5677777777776666788999999999999986 799999999999 99999999888888 8999999
Q ss_pred EEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccce------------------
Q 006825 385 TVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTAL------------------ 446 (630)
Q Consensus 385 sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~------------------ 446 (630)
+|+|+|++..+ +++++.|++|++||+.+++....
T Consensus 191 ~v~~~p~~~~~----------------------------l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~ 242 (393)
T 4gq1_A 191 SVQFRPSNPNQ----------------------------LIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTL 242 (393)
T ss_dssp EEEEETTEEEE----------------------------EEEEETTSEEEEEETTCCC----------CSCCCSEEEESG
T ss_pred EEEECCCCCce----------------------------EEecCCCCEEEEEECCCCcccccccccCCcccceEEecccc
Confidence 99999986422 36777888999999876642111
Q ss_pred --eeeeEecccCcCEEEEEEc-cCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEE-------------
Q 006825 447 --YKCQEIQAHNGSIWSIKFS-LDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLAN------------- 510 (630)
Q Consensus 447 --~~v~tL~gHt~~V~sVaFS-pDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~sva------------- 510 (630)
.......+|...|.+++|+ +||++|++++.|++|+|||+..+.....+ ..|...+..+.
T Consensus 243 ~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l-----~~~~~~~~~~~~~~~~~~~~~~~~ 317 (393)
T 4gq1_A 243 PLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEI-----SDSTMKLGPKNLLPNVQGISLFPS 317 (393)
T ss_dssp GGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC------------------------CCSCSEEEECSSCC
T ss_pred cceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceE-----eeecCccccEEEccccccccccCc
Confidence 0112346899999999997 79999999999999999999887765553 33333333332
Q ss_pred -----ECC--CCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeE
Q 006825 511 -----GSP--EPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHL 581 (630)
Q Consensus 511 -----fSp--dg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~L 581 (630)
++| ++.++++++.|+.| ++|+. +++++..+.+|...|.+|+|+|+ ++|
T Consensus 318 ~~~~~~~~~~~~~~~~sgs~Dg~V-----------------------~lwd~~~~~~~~~~~~~~~~V~svafspdG~~L 374 (393)
T 4gq1_A 318 LLGACPHPRYMDYFATAHSQHGLI-----------------------QLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHL 374 (393)
T ss_dssp SSCCEECSSCTTEEEEEETTTTEE-----------------------EEEETTCTTCCEEEEECSSCEEEEEECTTSSEE
T ss_pred ceeEEEccCCCCEEEEEECCCCEE-----------------------EEEECCCCcEEEEecCCCCcEEEEEEcCCCCEE
Confidence 332 34466777788888 88888 67888888999999999999999 999
Q ss_pred EEEECCCcEEEEeC
Q 006825 582 LSSSMDKTVRLWHL 595 (630)
Q Consensus 582 aSgS~DgtVrIWDl 595 (630)
|+++.|| |.||.+
T Consensus 375 A~as~~G-v~lvrL 387 (393)
T 4gq1_A 375 AIATEGS-VLLTRL 387 (393)
T ss_dssp EEEESSE-EEEEEE
T ss_pred EEEeCCC-eEEEEE
Confidence 9998776 556654
No 111
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.3e-25 Score=251.69 Aligned_cols=244 Identities=8% Similarity=-0.043 Sum_probs=193.3
Q ss_pred ccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCC-CCC-cc-ccCCcc
Q 006825 339 SPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDE-RDT-SS-EKGGRR 412 (630)
Q Consensus 339 s~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D-~dt-~s-~~gh~~ 412 (630)
...|.+|+|+| .+||+|.|+||+ |..+++++ + ||.+.|.+|+|+|+|. .-...-+ .+. .. ...|..
T Consensus 15 ~~~v~sv~~SpDG~~iASas~D~TV~---d~~~~~~l---~-gh~~~v~~V~FsPdg~-~~~~~~~~~~~~~~~~~~~~~ 86 (588)
T 2j04_A 15 EDWKNNLTWARDGTLYLTTFPDISIG---QPKYAKDI---N-CNSKNLFHVKEFPLEF-ENKLDFELAQQNGLLNSQPVC 86 (588)
T ss_dssp SSSSCCEEECTTSCEEEECSSSEEEE---EECCCSCC---S-SBGGGTEEEEEECCCC-CCTTTTSCCCSSCSSTTSCSC
T ss_pred hccEEEEEECCCCCEEEEEcCCceee---ccccccee---c-CCCccEEEEEECCCCC-cceEEEEeCCCceEeecCCCC
Confidence 46799999999 899999999999 56666544 6 9999999999999992 1000000 011 11 225688
Q ss_pred eEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCc-----CEEEEEEccCCCEEEEEeCCCcEEEEEC
Q 006825 413 SSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNG-----SIWSIKFSLDGRYLASAGEDCVIHVWQV 485 (630)
Q Consensus 413 ~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~-----~V~sVaFSpDG~~LASgS~DgtIrVWDl 485 (630)
.|.++++++++ +++++.|+.|++|+... ++..+. |.. .|.+++|||||++||+|+.||+|+|||+
T Consensus 87 ~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-------~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~ 158 (588)
T 2j04_A 87 YPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-------MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSI 158 (588)
T ss_dssp CEEEEEECSSSSCEEEEETTSCEEEEETTE-------EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEEC
T ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEeCCc-------eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEEC
Confidence 89999999999 99999999999999543 456677 776 4999999999999999999999999999
Q ss_pred cCCce-------eeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCC
Q 006825 486 VESER-------KGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDK 558 (630)
Q Consensus 486 ~tg~~-------~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk 558 (630)
.++.. +.++ .....+|...|.+++|+|+| +++++.|+.| ++|++.+.
T Consensus 159 ~~~~l~~~~~i~l~ti-~~~~~gh~~~V~sVawSPdg--Laass~D~tV-----------------------rlWd~~~~ 212 (588)
T 2j04_A 159 RKNSENTPEFYFESSI-RLSDAGSKDWVTHIVWYEDV--LVAALSNNSV-----------------------FSMTVSAS 212 (588)
T ss_dssp CCCTTTCCCCEEEEEE-ECSCTTCCCCEEEEEEETTE--EEEEETTCCE-----------------------EEECCCSS
T ss_pred CCCccccccceeeeee-ecccccccccEEEEEEcCCc--EEEEeCCCeE-----------------------EEEECCCC
Confidence 88753 2332 12236788999999999999 7788899999 78888443
Q ss_pred c----eEEe-ccCCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcEE-EEEecCCceEEEE---cCCCcEEEEecc
Q 006825 559 P----ICSF-QGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCL-KIFSHSDYDISLV---DRLMLRFAYGAF 626 (630)
Q Consensus 559 ~----l~tL-~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~l-~t~~H~~~V~sVa---s~~~~~lAsgs~ 626 (630)
. .+++ .+|...|.+++|+ +++||+++ |++|++||+.+++.. ..+.|.+.|+.|+ ++++..++++..
T Consensus 213 ~~~~~~~tL~~~h~~~V~svaFs-g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~e 287 (588)
T 2j04_A 213 SHQPVSRMIQNASRRKITDLKIV-DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNK 287 (588)
T ss_dssp SSCCCEEEEECCCSSCCCCEEEE-TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSS
T ss_pred ccccceeeecccccCcEEEEEEE-CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcC
Confidence 3 3567 4899999999999 78999987 799999999988874 4446999999999 777778888763
No 112
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.94 E-value=4e-25 Score=232.81 Aligned_cols=232 Identities=9% Similarity=0.010 Sum_probs=160.1
Q ss_pred eEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC------CCc--c---ccCCcceEEEeec
Q 006825 351 VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER------DTS--S---EKGGRRSSSATDD 419 (630)
Q Consensus 351 laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~------dt~--s---~~gh~~~Vsa~~~ 419 (630)
+++|+.|++++ +||..+|+.+.++. |...|++++|++++.. .+.++. .+. . ... ...+.++..
T Consensus 74 ~~~~~~d~~v~-iWd~~~~~~~~~~~--~~~~v~~v~~~~~~~~--~~~~~~i~i~d~~~~~~~~~~~~~-~~~~~~~s~ 147 (355)
T 3vu4_A 74 AFVTGVKEVVH-IWDDVKKQDVSRIK--VDAPVKDLFLSREFIV--VSYGDVISVFKFGNPWKRITDDIR-FGGVCEFSN 147 (355)
T ss_dssp EEECSSTTEEE-EEETTTTEEEEEEE--CSSCEEEEEECSSEEE--EEETTEEEEEESSTTCCBSSCCEE-EEEEEEEET
T ss_pred EEEECCccEEE-EEECCCCcEEEEEE--CCCceEEEEEcCCEEE--EEEcCEEEEEECCCCceeeEEecc-CCceEEEEc
Confidence 46778888999 99999999888886 5668999999886533 333332 111 0 111 222333333
Q ss_pred CCCeE-EE-ecCCcEEEEEeCCCCcc----------cceee-eeEecccCcCEEEEEEccCCCEEEEEeCCCc-EEEEEC
Q 006825 420 SQDVS-FH-GQERVRVRQYGKSCKDL----------TALYK-CQEIQAHNGSIWSIKFSLDGRYLASAGEDCV-IHVWQV 485 (630)
Q Consensus 420 s~d~l-~S-gs~Dg~VriWd~~~~el----------~~~~~-v~tL~gHt~~V~sVaFSpDG~~LASgS~Dgt-IrVWDl 485 (630)
..+ ++ |..++.|++||+..+.. ..+.. ++.+.+|.+.|++|+|+|+|++||||+.|++ |+|||+
T Consensus 148 --~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~ 225 (355)
T 3vu4_A 148 --GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKT 225 (355)
T ss_dssp --TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEET
T ss_pred --cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEEC
Confidence 443 33 78999999999976430 00112 6789999999999999999999999999999 999999
Q ss_pred cCCceeeeeecccccC-cccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCcccccc---EEEeCCCCceE
Q 006825 486 VESERKGELLEKQEDG-HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPE---TVFALSDKPIC 561 (630)
Q Consensus 486 ~tg~~~~~l~~~~~~g-h~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~---~Vwdlsgk~l~ 561 (630)
.+++.+..+ ..+ |...|.+++|+|++++|++++.|++|++|+...............+.+. ..|.+ ...
T Consensus 226 ~~~~~~~~~----~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 298 (355)
T 3vu4_A 226 EDGVLVREF----RRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSL---CNF 298 (355)
T ss_dssp TTCCEEEEE----ECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCS---EEE
T ss_pred CCCcEEEEE----EcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccce---eEE
Confidence 999988885 235 8999999999999999999999999999987653221111111111110 11111 111
Q ss_pred Ee-ccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCC
Q 006825 562 SF-QGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSS 597 (630)
Q Consensus 562 tL-~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~t 597 (630)
.+ .++...+..++|+++ ++|++++.||.+++|++..
T Consensus 299 ~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 299 KLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVF 336 (355)
T ss_dssp ECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred EeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence 11 123334577999999 8999999999999999765
No 113
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.94 E-value=3.5e-25 Score=234.93 Aligned_cols=225 Identities=14% Similarity=0.062 Sum_probs=184.7
Q ss_pred eeEEEeec----ceEeecCCCccEecccCCCC-c---eeEEecCCccCCEEEEEEcC-CCCeEEeecCCCCCccccCCcc
Q 006825 342 VQELMRRQ----NVEEGNKDSFDLNNNGSSGG-G---MKSKKKGSWFKSIRTVASSV-TGHKERRSSDERDTSSEKGGRR 412 (630)
Q Consensus 342 V~~Lafs~----~laSgS~D~tvr~vWD~~tG-~---~~~~lk~gH~~~V~sVAfSp-dG~~lasgS~D~dt~s~~gh~~ 412 (630)
...++++| .+++++.|++++ +|++.+. + ....+. +|...|.+++|+| +++++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~-v~~~~~~~~~~~~~~~~~-~h~~~V~~~~~~p~~~~~l----------------- 97 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFL-VLPLGKTGRVDKNVPLVC-GHTAPVLDIAWCPHNDNVI----------------- 97 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEE-EEETTCCEECCTTCCCBC-CCSSCEEEEEECTTCTTEE-----------------
T ss_pred CCcEEECCCeEEEEEEEcCCCEEE-EEECccCCCCCCCCceEe-cCCCCEEEEEeCCCCCCEE-----------------
Confidence 34467777 456789999999 9998654 2 344566 8999999999999 77666
Q ss_pred eEEEeecCCCeEEEecCCcEEEEEeCCCCcccce--eeeeEecccCcCEEEEEEccCC-CEEEEEeCCCcEEEEECcCCc
Q 006825 413 SSSATDDSQDVSFHGQERVRVRQYGKSCKDLTAL--YKCQEIQAHNGSIWSIKFSLDG-RYLASAGEDCVIHVWQVVESE 489 (630)
Q Consensus 413 ~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~--~~v~tL~gHt~~V~sVaFSpDG-~~LASgS~DgtIrVWDl~tg~ 489 (630)
++++.|++|++|++..+.+... ..+..+.+|...|++|+|+|++ ++|++++.|++|+|||+.+++
T Consensus 98 ------------~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 165 (402)
T 2aq5_A 98 ------------ASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA 165 (402)
T ss_dssp ------------EEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE
T ss_pred ------------EEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC
Confidence 5567788999999987642110 2467889999999999999998 699999999999999999988
Q ss_pred eeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEe-ccCC
Q 006825 490 RKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSF-QGHL 567 (630)
Q Consensus 490 ~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL-~GHs 567 (630)
.+..+. ..+|...|.+++|+|++.+|++++.|+.| ++|++ +++.+..+ .+|.
T Consensus 166 ~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~d~~i-----------------------~iwd~~~~~~~~~~~~~~~ 219 (402)
T 2aq5_A 166 AVLTLG---PDVHPDTIYSVDWSRDGALICTSCRDKRV-----------------------RVIEPRKGTVVAEKDRPHE 219 (402)
T ss_dssp EEEEEC---TTTCCSCEEEEEECTTSSCEEEEETTSEE-----------------------EEEETTTTEEEEEEECSSC
T ss_pred ccEEEe---cCCCCCceEEEEECCCCCEEEEEecCCcE-----------------------EEEeCCCCceeeeeccCCC
Confidence 776641 16789999999999999999999999999 88888 67888888 7898
Q ss_pred CC-EEEEEEcCC-CeEEEE---ECCCcEEEEeCCCCcE-EEE--EecCCceEEEE-cCCCcEEEE
Q 006825 568 DD-VLDLSWSKS-QHLLSS---SMDKTVRLWHLSSKTC-LKI--FSHSDYDISLV-DRLMLRFAY 623 (630)
Q Consensus 568 ~~-V~sLafSPd-~~LaSg---S~DgtVrIWDl~tg~~-l~t--~~H~~~V~sVa-s~~~~~lAs 623 (630)
.. +.+++|+|+ .+|++| +.|++|+|||+.+++. +.. +.|...|.+++ ++++..++.
T Consensus 220 ~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 284 (402)
T 2aq5_A 220 GTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYL 284 (402)
T ss_dssp SSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEE
T ss_pred CCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEE
Confidence 76 899999999 788888 7999999999998764 333 34888899999 888877754
No 114
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=6.6e-26 Score=262.92 Aligned_cols=237 Identities=14% Similarity=0.131 Sum_probs=197.3
Q ss_pred eeeecCccceeEEEeec---ceEeecCCCccEecccCC--CCceeEEecCCccCCEEEEEEcCC--CCeEEeecCCC---
Q 006825 333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSS--GGGMKSKKKGSWFKSIRTVASSVT--GHKERRSSDER--- 402 (630)
Q Consensus 333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~--tG~~~~~lk~gH~~~V~sVAfSpd--G~~lasgS~D~--- 402 (630)
..+.||...|.+++|+| .+++|+.|++|+ +||+. ++..+.++. +|...|.+++|+|+ |+++++++.|+
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~-vwd~~~~~~~~~~~l~-~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~ 80 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIK-IFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGTILASCSYDGKVL 80 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEE-EEEEETTEEEEEEEEC-CCSSCEEEEEECCTTSCSEEEEEETTSCEE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEE-EEecCCCCCccceecc-CCcCceEEEEecCCCCCCEEEEEeCCCeEE
Confidence 46789999999999998 799999999999 99998 567778888 99999999999998 99999999987
Q ss_pred ----CC------ccccCCcceEEEeecCCC--e--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc--
Q 006825 403 ----DT------SSEKGGRRSSSATDDSQD--V--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-- 466 (630)
Q Consensus 403 ----dt------~s~~gh~~~Vsa~~~s~d--~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp-- 466 (630)
.+ ....+|...|.++.++++ + +++|+.|++|++||+..+... ....+.+|...|.+++|+|
T Consensus 81 vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~---~~~~~~~~~~~v~~l~~~p~~ 157 (753)
T 3jro_A 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT---SPIIIDAHAIGVNSASWAPAT 157 (753)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCC---CCEEEECCSSCEEEEEECCCC
T ss_pred EEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCc---ceeEeecCCCceEEEEecCcc
Confidence 11 226779999999999987 5 999999999999999876432 3456789999999999999
Q ss_pred -----------CCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCC---CCEEEEeeCCCeeeeecc
Q 006825 467 -----------DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE---PTSLSPKHLDNHLEKKRR 532 (630)
Q Consensus 467 -----------DG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpd---g~~lasgs~Dg~I~i~~~ 532 (630)
++++|++|+.||+|++||+.++.....+. ..+.+|...|.+++|+|+ +.++++++.|+.|
T Consensus 158 ~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~-~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I----- 231 (753)
T 3jro_A 158 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE-STLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC----- 231 (753)
T ss_dssp ---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEE-EEECCCSSCEEEEEECCCCSSSEEEEEEESSSCE-----
T ss_pred cccccccccCCCCCEEEEEECCCeEEEEeccCCcccceee-eeecCCCCcEEEEEeccCCCCCCEEEEEecCCEE-----
Confidence 59999999999999999998875432221 224789999999999999 9999999999999
Q ss_pred cccccccccccCccccccEEEeCC-CC-----ceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCC
Q 006825 533 GRSINRKSLSLDHMVVPETVFALS-DK-----PICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK 598 (630)
Q Consensus 533 ~~~~~~~s~s~d~~i~~~~Vwdls-gk-----~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg 598 (630)
++|++. ++ .+....+|...|++++|+|+ .+|++|+.||+|+||++.++
T Consensus 232 ------------------~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 232 ------------------IIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp ------------------EEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred ------------------EEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 556552 21 33344679999999999999 99999999999999999854
No 115
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.94 E-value=3.1e-25 Score=227.52 Aligned_cols=228 Identities=8% Similarity=-0.046 Sum_probs=182.4
Q ss_pred eeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEE--cCCCCeEEeecCCC-----
Q 006825 333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVAS--SVTGHKERRSSDER----- 402 (630)
Q Consensus 333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAf--SpdG~~lasgS~D~----- 402 (630)
..+.+|...|.+|+|+| .|++++.|++++ +||+.+++.+. +. +|...|.+++| +|+|+++++++.|+
T Consensus 80 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~-iwd~~~~~~~~-~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vw 156 (368)
T 3mmy_A 80 KAQQMHTGPVLDVCWSDDGSKVFTASCDKTAK-MWDLSSNQAIQ-IA-QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFW 156 (368)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEETTSEEE-EEETTTTEEEE-EE-ECSSCEEEEEEEECSSCEEEEEEETTSEEEEE
T ss_pred EEeccccCCEEEEEECcCCCEEEEEcCCCcEE-EEEcCCCCcee-ec-cccCceEEEEEEeCCCCCEEEEccCCCcEEEE
Confidence 45678999999999998 799999999999 99999998776 44 79999999999 99999999999887
Q ss_pred CCcc------ccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCE----EE
Q 006825 403 DTSS------EKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRY----LA 472 (630)
Q Consensus 403 dt~s------~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~----LA 472 (630)
+... ...+ ..+.+..+....++.+..++.+++|+....... .......+...+.++++.++... |+
T Consensus 157 d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (368)
T 3mmy_A 157 DTRSSNPMMVLQLP-ERCYCADVIYPMAVVATAERGLIVYQLENQPSE---FRRIESPLKHQHRCVAIFKDKQNKPTGFA 232 (368)
T ss_dssp CSSCSSCSEEEECS-SCEEEEEEETTEEEEEEGGGCEEEEECSSSCEE---EEECCCSCSSCEEEEEEEECTTSCEEEEE
T ss_pred ECCCCcEEEEEecC-CCceEEEecCCeeEEEeCCCcEEEEEeccccch---hhhccccccCCCceEEEcccCCCCCCeEE
Confidence 2111 3333 356666677778889999999999999765321 11122334556677777666554 99
Q ss_pred EEeCCCcEEEEECcCCc---eeeeeecccccCccc------------ceEEEEECCCCCEEEEeeCCCeeeeeccccccc
Q 006825 473 SAGEDCVIHVWQVVESE---RKGELLEKQEDGHLN------------MLLLANGSPEPTSLSPKHLDNHLEKKRRGRSIN 537 (630)
Q Consensus 473 SgS~DgtIrVWDl~tg~---~~~~l~~~~~~gh~~------------~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~ 537 (630)
+++.|+.|++|++.... ....+ .+|.. .|.+++|+|++.+|++++.|+.|
T Consensus 233 ~~~~dg~i~i~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i---------- 297 (368)
T 3mmy_A 233 LGSIEGRVAIHYINPPNPAKDNFTF-----KCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRF---------- 297 (368)
T ss_dssp EEETTSEEEEEESSCSCHHHHSEEE-----ECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCE----------
T ss_pred EecCCCcEEEEecCCCCccccceee-----eeeecccccccccccccceEEEEEecCCCEEEEEccCCeE----------
Confidence 99999999999998773 33332 44544 79999999999999999999999
Q ss_pred ccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeC
Q 006825 538 RKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHL 595 (630)
Q Consensus 538 ~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl 595 (630)
++|++ +++++.++.+|...|++++|+|+ .+|++++.|+..+.|++
T Consensus 298 -------------~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 298 -------------SFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp -------------EEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred -------------EEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccc
Confidence 88888 68899999999999999999999 99999999986665554
No 116
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.94 E-value=1.8e-24 Score=233.14 Aligned_cols=222 Identities=14% Similarity=0.134 Sum_probs=173.5
Q ss_pred ceeeecCccceeEEEeec----ceEeecCCCccEecccCCCCce-------eEEecCCccCCEEEEEEcCCCCeEEeecC
Q 006825 332 FEMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGM-------KSKKKGSWFKSIRTVASSVTGHKERRSSD 400 (630)
Q Consensus 332 f~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~-------~~~lk~gH~~~V~sVAfSpdG~~lasgS~ 400 (630)
...+.+|...|.+|+|+| .|++|+.|++|+ +||+.++.. ...+. +|...|.+++|+|++.
T Consensus 174 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~-vwd~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~~p~~~------- 244 (430)
T 2xyi_A 174 DLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTIC-LWDINATPKEHRVIDAKNIFT-GHTAVVEDVAWHLLHE------- 244 (430)
T ss_dssp SEEEECCSSCCCCEEECTTSTTEEEEECTTSCEE-EEETTSCCBGGGEEECSEEEC-CCSSCEEEEEECSSCT-------
T ss_pred cEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEE-EEeCCCCCCCCceeccceeec-CCCCCEeeeEEeCCCC-------
Confidence 378889999999999998 699999999999 999988432 45566 8999999999999432
Q ss_pred CCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCC-EEEEEeCCCc
Q 006825 401 ERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGR-YLASAGEDCV 479 (630)
Q Consensus 401 D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~-~LASgS~Dgt 479 (630)
..+++++.|++|++||+..... ...+..+.+|...|++|+|+|++. +|++|+.|++
T Consensus 245 ---------------------~~l~s~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~ 301 (430)
T 2xyi_A 245 ---------------------SLFGSVADDQKLMIWDTRNNNT--SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKT 301 (430)
T ss_dssp ---------------------TEEEEEETTSEEEEEETTCSCS--SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSE
T ss_pred ---------------------CEEEEEeCCCeEEEEECCCCCC--CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCe
Confidence 2246677889999999986531 124567789999999999999987 7999999999
Q ss_pred EEEEECcCC-ceeeeeecccccCcccceEEEEECCCCC-EEEEeeCCCeeeeecccccccccccccCccccccEEEeCCC
Q 006825 480 IHVWQVVES-ERKGELLEKQEDGHLNMLLLANGSPEPT-SLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD 557 (630)
Q Consensus 480 IrVWDl~tg-~~~~~l~~~~~~gh~~~V~svafSpdg~-~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsg 557 (630)
|+|||+.+. ..+.. +.+|...|.+++|+|++. ++++++.|+.|.+|+........... ..-+...
T Consensus 302 v~vwd~~~~~~~~~~-----~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--------~~~~~~~ 368 (430)
T 2xyi_A 302 VALWDLRNLKLKLHS-----FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE--------DAEDGPP 368 (430)
T ss_dssp EEEEETTCTTSCSEE-----EECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHH--------HHHHCCT
T ss_pred EEEEeCCCCCCCeEE-----eecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcc--------ccccCCc
Confidence 999999874 44444 367999999999999985 68999999999555543210000000 0000012
Q ss_pred CceEEeccCCCCEEEEEEcCC-C-eEEEEECCCcEEEEeCCCC
Q 006825 558 KPICSFQGHLDDVLDLSWSKS-Q-HLLSSSMDKTVRLWHLSSK 598 (630)
Q Consensus 558 k~l~tL~GHs~~V~sLafSPd-~-~LaSgS~DgtVrIWDl~tg 598 (630)
+++..+.+|...|++++|+|+ . +|++++.|++|+||++...
T Consensus 369 ~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 369 ELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp TEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred ceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 677788899999999999999 6 8999999999999998753
No 117
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.93 E-value=2.9e-24 Score=223.88 Aligned_cols=253 Identities=15% Similarity=0.107 Sum_probs=198.8
Q ss_pred cCCCccEecccCCCCceeEEecCCccCCEEEEEEcC-CCCeEEeecCCC-------CCcc----c-------------cC
Q 006825 355 NKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSV-TGHKERRSSDER-------DTSS----E-------------KG 409 (630)
Q Consensus 355 S~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSp-dG~~lasgS~D~-------dt~s----~-------------~g 409 (630)
+.+.+++ +|+..+++....++ +|.+.|.+++|+| +|+++++++.|+ ++.. . .+
T Consensus 20 ~~~~~~~-v~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (408)
T 4a11_B 20 RAESTRR-VLGLELNKDRDVER-IHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDV 97 (408)
T ss_dssp HHHHHHH-HHTEEECTTEEECC-CCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTC
T ss_pred eccCcce-eeccccCcceeeee-ccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecccccccccccccc
Confidence 3456788 99999999999988 8999999999999 999999999887 1111 1 36
Q ss_pred CcceEEEeecCC-Ce--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc---CCCEEEEEeCCCcEEEE
Q 006825 410 GRRSSSATDDSQ-DV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL---DGRYLASAGEDCVIHVW 483 (630)
Q Consensus 410 h~~~Vsa~~~s~-d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp---DG~~LASgS~DgtIrVW 483 (630)
|...|.++.+.+ +. +++++.|+.|++|++.+++. +..+. |...+.+++|++ ++.+|++++.|+.|++|
T Consensus 98 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 171 (408)
T 4a11_B 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQT-----ADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLC 171 (408)
T ss_dssp CSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEE-----EEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEE
T ss_pred CCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCcc-----ceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEE
Confidence 999999999988 43 89999999999999987642 33443 888999999999 45599999999999999
Q ss_pred ECcCCceeeeeecccccCcccceEEEEECCCCC-EEEEeeCCCeeeeecccccc-cccccccCccccccEEEeCCCCceE
Q 006825 484 QVVESERKGELLEKQEDGHLNMLLLANGSPEPT-SLSPKHLDNHLEKKRRGRSI-NRKSLSLDHMVVPETVFALSDKPIC 561 (630)
Q Consensus 484 Dl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~-~lasgs~Dg~I~i~~~~~~~-~~~s~s~d~~i~~~~Vwdlsgk~l~ 561 (630)
|+.+++.+..+ .+|...|.+++|+|++. ++++++.|+.|++|+..... ....+...... .......
T Consensus 172 d~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-------~~~~~~~ 239 (408)
T 4a11_B 172 DLKSGSCSHIL-----QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGK-------KSQAVES 239 (408)
T ss_dssp ESSSSCCCEEE-----CCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTC-------SCCCTTT
T ss_pred eCCCcceeeee-----cCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccc-------cceeecc
Confidence 99998877764 78999999999999998 58899999999666554311 11000000000 0011222
Q ss_pred EeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCC------------------------------------------
Q 006825 562 SFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK------------------------------------------ 598 (630)
Q Consensus 562 tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg------------------------------------------ 598 (630)
.+.+|...|++++|+|+ .+|++++.|++|++||+.++
T Consensus 240 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 319 (408)
T 4a11_B 240 ANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVY 319 (408)
T ss_dssp SSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEE
T ss_pred ccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEE
Confidence 33689999999999999 89999999999999998653
Q ss_pred -----cEEEEEe-cCCceEEEE-cCCCcEEEEecce
Q 006825 599 -----TCLKIFS-HSDYDISLV-DRLMLRFAYGAFL 627 (630)
Q Consensus 599 -----~~l~t~~-H~~~V~sVa-s~~~~~lAsgs~~ 627 (630)
+++..+. |...|++++ ++++..+++++.+
T Consensus 320 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 355 (408)
T 4a11_B 320 TVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRD 355 (408)
T ss_dssp ETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETT
T ss_pred ECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCC
Confidence 5667777 999999999 8999999888654
No 118
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.93 E-value=3.5e-23 Score=216.89 Aligned_cols=253 Identities=13% Similarity=0.021 Sum_probs=199.8
Q ss_pred CCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec---c-eEeecCCCccEecccCCCCceeEEecCCccCCEEEE
Q 006825 311 EDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---N-VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTV 386 (630)
Q Consensus 311 ~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~-laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sV 386 (630)
.++ ..++|++.+|+.+ ..+.+|.. +..++|+| . +++++.|++++ +||..+++.+..+. .|. .|.++
T Consensus 10 ~d~-~v~v~d~~~~~~~-----~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~-v~d~~~~~~~~~~~-~~~-~v~~~ 79 (391)
T 1l0q_A 10 ESD-NISVIDVTSNKVT-----ATIPVGSN-PMGAVISPDGTKVYVANAHSNDVS-IIDTATNNVIATVP-AGS-SPQGV 79 (391)
T ss_dssp TTT-EEEEEETTTTEEE-----EEEECSSS-EEEEEECTTSSEEEEEEGGGTEEE-EEETTTTEEEEEEE-CSS-SEEEE
T ss_pred CCC-EEEEEECCCCeEE-----EEeecCCC-cceEEECCCCCEEEEECCCCCeEE-EEECCCCeEEEEEE-CCC-Cccce
Confidence 344 3679999999887 66677755 89999998 3 47888999999 99999999999887 443 99999
Q ss_pred EEcCCCCeEE-eecCCC-----C--Ccc---ccCCcceEEEeecCCCe--E-EEecCCcEEEEEeCCCCcccceeeeeEe
Q 006825 387 ASSVTGHKER-RSSDER-----D--TSS---EKGGRRSSSATDDSQDV--S-FHGQERVRVRQYGKSCKDLTALYKCQEI 452 (630)
Q Consensus 387 AfSpdG~~la-sgS~D~-----d--t~s---~~gh~~~Vsa~~~s~d~--l-~Sgs~Dg~VriWd~~~~el~~~~~v~tL 452 (630)
+|+|+|++++ +++.+. + +.. ...+...+..+.+++++ + +++..++.|++||..+++ .+..+
T Consensus 80 ~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~-----~~~~~ 154 (391)
T 1l0q_A 80 AVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKA-----VINTV 154 (391)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-----EEEEE
T ss_pred EECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCc-----EEEEE
Confidence 9999999875 455544 1 111 12233456788888886 4 788999999999998764 34556
Q ss_pred cccCcCEEEEEEccCCCEE-EEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEee---CCCeee
Q 006825 453 QAHNGSIWSIKFSLDGRYL-ASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKH---LDNHLE 528 (630)
Q Consensus 453 ~gHt~~V~sVaFSpDG~~L-ASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs---~Dg~I~ 528 (630)
..| ..+.+++|+|+|++| ++++.|++|++||+.+++....+ .+...+..++|+|+++++++++ .++.|
T Consensus 155 ~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~------~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v- 226 (391)
T 1l0q_A 155 SVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTV------KVEAAPSGIAVNPEGTKAYVTNVDKYFNTV- 226 (391)
T ss_dssp ECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE------ECSSEEEEEEECTTSSEEEEEEECSSCCEE-
T ss_pred ecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEE------ecCCCccceEECCCCCEEEEEecCcCCCcE-
Confidence 655 457999999999987 67889999999999998776654 2445788999999999988887 57888
Q ss_pred eecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeE-EEEECCCcEEEEeCCCCcEEEEEe
Q 006825 529 KKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHL-LSSSMDKTVRLWHLSSKTCLKIFS 605 (630)
Q Consensus 529 i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~L-aSgS~DgtVrIWDl~tg~~l~t~~ 605 (630)
.+|++ +++++..+..|. .+.+++|+|+ ++| ++++.|++|++||+.+++++..+.
T Consensus 227 ----------------------~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~ 283 (391)
T 1l0q_A 227 ----------------------SMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMA 283 (391)
T ss_dssp ----------------------EEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred ----------------------EEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEE
Confidence 78887 677788887765 5899999999 666 677899999999999999999887
Q ss_pred -cCCc
Q 006825 606 -HSDY 609 (630)
Q Consensus 606 -H~~~ 609 (630)
|..+
T Consensus 284 ~~~~~ 288 (391)
T 1l0q_A 284 VGKNP 288 (391)
T ss_dssp CSSSE
T ss_pred CCcCC
Confidence 5443
No 119
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.8e-24 Score=223.73 Aligned_cols=242 Identities=8% Similarity=-0.036 Sum_probs=180.8
Q ss_pred CcccccccEEEEECCCCcEEEEe---------------eecCCCceeEEEEcC---------CCceEeeecceee-ecCc
Q 006825 285 TAGVAEQGCLIKNLDNGKEFVVN---------------EIQEDGTWKKVKEVG---------TGRQLTIEEFEMC-VGHS 339 (630)
Q Consensus 285 ~~~~~~~~~~I~~LddG~~~~v~---------------e~~~dg~~~~l~dv~---------TG~~lt~eef~~l-~GHs 339 (630)
+++..++.++||++.+|+..... ..+.|+. .++|+.. +++.+ ..+ .+|.
T Consensus 52 ~sg~~Dg~v~iwd~~~~~~~~~~~~~~v~~~~~~~~~~s~s~D~~-i~~w~~~~~~~~~~~~~~~~~-----~~~~~~~~ 125 (343)
T 3lrv_A 52 MCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPAIISRGPCNR-LLLLYPGNQITILDSKTNKVL-----REIEVDSA 125 (343)
T ss_dssp EEEEETTEEEEEEESSSSCEEEEEEECCCTTCCCCSEEEECSTTE-EEEEETTTEEEEEETTTCCEE-----EEEECCCS
T ss_pred EEECCCCcEEEEECCCCcEEEEEecCCceeeeeCCceEEecCCCe-EEEEEccCceEEeecCCccee-----EEeecCCC
Confidence 67788899999999998754321 2233444 5566544 55544 333 3788
Q ss_pred cceeEEEeec-----ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceE
Q 006825 340 PIVQELMRRQ-----NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSS 414 (630)
Q Consensus 340 ~~V~~Lafs~-----~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~V 414 (630)
..|..++|+| .+++|+.|++++ +||+.+++....+...|...|.+++|+|+|++++
T Consensus 126 ~~v~~~~~~~~~~~~~l~s~s~dg~i~-~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~la------------------ 186 (343)
T 3lrv_A 126 NEIIYMYGHNEVNTEYFIWADNRGTIG-FQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLA------------------ 186 (343)
T ss_dssp SCEEEEECCC---CCEEEEEETTCCEE-EEESSSSCEEEEECCCSSCCCCEEEECTTSCEEE------------------
T ss_pred CCEEEEEcCCCCCCCEEEEEeCCCcEE-EEECCCCcEEEEEecCCCCceEEEEECCCCCEEE------------------
Confidence 9999999998 799999999999 9999999998877656777899999999998775
Q ss_pred EEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecc-cCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeee
Q 006825 415 SATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQA-HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGE 493 (630)
Q Consensus 415 sa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~g-Ht~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~ 493 (630)
+|+.|+.|++||+.+++. ....+.+ |.+.|++|+|+|+|.+|++++. ++|+|||+++++....
T Consensus 187 -----------sg~~dg~i~iwd~~~~~~----~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-~~v~iwd~~~~~~~~~ 250 (343)
T 3lrv_A 187 -----------LYSPDGILDVYNLSSPDQ----ASSRFPVDEEAKIKEVKFADNGYWMVVECD-QTVVCFDLRKDVGTLA 250 (343)
T ss_dssp -----------EECTTSCEEEEESSCTTS----CCEECCCCTTSCEEEEEECTTSSEEEEEES-SBEEEEETTSSTTCBS
T ss_pred -----------EEcCCCEEEEEECCCCCC----CccEEeccCCCCEEEEEEeCCCCEEEEEeC-CeEEEEEcCCCCccee
Confidence 456678899999987753 1256777 9999999999999999999995 5999999998876554
Q ss_pred eecccccCcccce--EEEEECCCCCEEEEeeC-CCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCC
Q 006825 494 LLEKQEDGHLNML--LLANGSPEPTSLSPKHL-DNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDD 569 (630)
Q Consensus 494 l~~~~~~gh~~~V--~svafSpdg~~lasgs~-Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~ 569 (630)
+. .+..|...+ .+++|+|++++|++++. |+.+ ++|++ .+...... ..
T Consensus 251 ~~--~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i-----------------------~v~~~~~~~~~~~~----~~ 301 (343)
T 3lrv_A 251 YP--TYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSL-----------------------TIYKFDKKTKNWTK----DE 301 (343)
T ss_dssp SC--CCBC-----CCEEEEECTTSSEEEEEETTTTEE-----------------------EEEEECTTTCSEEE----EE
T ss_pred ec--ccccccccccceEEEECCCCCEEEEecCCCCcE-----------------------EEEEEcccccceEe----cC
Confidence 31 112233333 46999999999999988 9999 56655 22222222 46
Q ss_pred EEEEEEcC---C-CeEEEEECCCcEEEEeCC
Q 006825 570 VLDLSWSK---S-QHLLSSSMDKTVRLWHLS 596 (630)
Q Consensus 570 V~sLafSP---d-~~LaSgS~DgtVrIWDl~ 596 (630)
+..++|.+ + ..|++++.|+++++|-..
T Consensus 302 ~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 302 ESALCLQSDTADFTDMDVVCGDGGIAAILKT 332 (343)
T ss_dssp EEECCC----CCCCEEEEEEETTEEEEEEEC
T ss_pred ceeEecCccccccceeEEEecCCceEEEEec
Confidence 77888888 7 899999999999988543
No 120
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=4.2e-24 Score=230.99 Aligned_cols=254 Identities=11% Similarity=0.040 Sum_probs=186.6
Q ss_pred cceeEEEeec--ceEeecCCCccEecccCCCCc---eeEEecCCccCCEEEEEEc---CCCCeEEeecCCC---------
Q 006825 340 PIVQELMRRQ--NVEEGNKDSFDLNNNGSSGGG---MKSKKKGSWFKSIRTVASS---VTGHKERRSSDER--------- 402 (630)
Q Consensus 340 ~~V~~Lafs~--~laSgS~D~tvr~vWD~~tG~---~~~~lk~gH~~~V~sVAfS---pdG~~lasgS~D~--------- 402 (630)
..+++++|++ .++.++.++.|+ +||+.+|+ .+..+. .|...+....+. .++..+.....+.
T Consensus 5 ~p~~~v~~s~dg~~l~~~~~~~i~-v~d~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAIIKNCIL-SFKYQSPNHWEFAGKWS-DDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp CCCCEEEECSSSSEEEEEETTEEE-EEEEETTTEEEEEEEEE-CCC----------------------------------
T ss_pred ccEEEEEecCCCCEEEEEeCCeEE-EEECCCCCcceeeeecC-CccccccccccccchhhccccccccccccccccCcCc
Confidence 3578888988 344455678999 99999999 777776 454422222221 1111111111110
Q ss_pred -----------CCccccCCcceEEEeecCCCe--E-EEecCCcEEEEEeCC--CCcccceeeeeEec--ccCcCEEEEEE
Q 006825 403 -----------DTSSEKGGRRSSSATDDSQDV--S-FHGQERVRVRQYGKS--CKDLTALYKCQEIQ--AHNGSIWSIKF 464 (630)
Q Consensus 403 -----------dt~s~~gh~~~Vsa~~~s~d~--l-~Sgs~Dg~VriWd~~--~~el~~~~~v~tL~--gHt~~V~sVaF 464 (630)
.....++|...|.++++++++ + ++++.|++|++|++. .++ +++.+. .|...|.+|+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~-----~~~~~~~~~~~~~v~~~~~ 157 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKN-----VLKLRKRFCFSKRPNAISI 157 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSS-----CEEEEEEEECSSCEEEEEE
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCc-----eeeeeecccCCCCceEEEE
Confidence 011134667789999999887 4 889999999999987 553 345555 67789999999
Q ss_pred ccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCC---CCEEEEeeCCCeeeeeccccccccccc
Q 006825 465 SLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE---PTSLSPKHLDNHLEKKRRGRSINRKSL 541 (630)
Q Consensus 465 SpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpd---g~~lasgs~Dg~I~i~~~~~~~~~~s~ 541 (630)
+|+|++|++|+.|+.|++|++.++...... ...+.+|...|.+++|+|+ +++|++++.|+.|
T Consensus 158 sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~-~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i-------------- 222 (450)
T 2vdu_B 158 AEDDTTVIIADKFGDVYSIDINSIPEEKFT-QEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHI-------------- 222 (450)
T ss_dssp CTTSSEEEEEETTSEEEEEETTSCCCSSCC-CCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCE--------------
T ss_pred cCCCCEEEEEeCCCcEEEEecCCccccccc-ceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcE--------------
Confidence 999999999999999999999887755310 0124688999999999999 9999999999999
Q ss_pred ccCccccccEEEeC-CCCceEE-eccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-c-----------
Q 006825 542 SLDHMVVPETVFAL-SDKPICS-FQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-H----------- 606 (630)
Q Consensus 542 s~d~~i~~~~Vwdl-sgk~l~t-L~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H----------- 606 (630)
++|++ +++++.. +.+|...|++++|+ + .+|++++.|++|+|||+.+++++.++. +
T Consensus 223 ---------~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 292 (450)
T 2vdu_B 223 ---------KISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQH 292 (450)
T ss_dssp ---------EEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTS
T ss_pred ---------EEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcc
Confidence 78887 6777777 56999999999999 9 999999999999999999999999886 2
Q ss_pred --------------CCceEEEE-cCCCcEEEEec
Q 006825 607 --------------SDYDISLV-DRLMLRFAYGA 625 (630)
Q Consensus 607 --------------~~~V~sVa-s~~~~~lAsgs 625 (630)
...|.+|+ .+++..+++++
T Consensus 293 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 326 (450)
T 2vdu_B 293 LAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFV 326 (450)
T ss_dssp BC----------CBCCCEEEEEECSSSSEEEEEE
T ss_pred cccccccccccccceEEEEEEEEeCCCCEEEEEE
Confidence 24678888 77777777765
No 121
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.92 E-value=6.2e-23 Score=218.01 Aligned_cols=244 Identities=10% Similarity=-0.003 Sum_probs=200.0
Q ss_pred eEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCC
Q 006825 316 KKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTG 392 (630)
Q Consensus 316 ~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG 392 (630)
.++|++.+|+.+.......+.+|...|..++|.+ .+++++.|++++ +||+.+++.+.++. .|...+.+++|+|+|
T Consensus 146 i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~-~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~ 223 (433)
T 3bws_A 146 MDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVH-VFDLKTLAYKATVD-LTGKWSKILLYDPIR 223 (433)
T ss_dssp EEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEE-EEETTTCCEEEEEE-CSSSSEEEEEEETTT
T ss_pred EEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEE-EEECCCceEEEEEc-CCCCCeeEEEEcCCC
Confidence 4577777777764444456789999999999987 789999999999 99999999999998 899999999999998
Q ss_pred CeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEE
Q 006825 393 HKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLA 472 (630)
Q Consensus 393 ~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LA 472 (630)
+++. +++..++.|++||..+++ .+..+..| ..+.+++|+|+|++|+
T Consensus 224 ~~l~----------------------------~~~~~~~~i~~~d~~~~~-----~~~~~~~~-~~~~~~~~~~~g~~l~ 269 (433)
T 3bws_A 224 DLVY----------------------------CSNWISEDISVIDRKTKL-----EIRKTDKI-GLPRGLLLSKDGKELY 269 (433)
T ss_dssp TEEE----------------------------EEETTTTEEEEEETTTTE-----EEEECCCC-SEEEEEEECTTSSEEE
T ss_pred CEEE----------------------------EEecCCCcEEEEECCCCc-----EEEEecCC-CCceEEEEcCCCCEEE
Confidence 8663 445567899999997764 34555554 4599999999999999
Q ss_pred EEe--------CCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCE-EEEeeCCCeeeeeccccccccccccc
Q 006825 473 SAG--------EDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTS-LSPKHLDNHLEKKRRGRSINRKSLSL 543 (630)
Q Consensus 473 SgS--------~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~-lasgs~Dg~I~i~~~~~~~~~~s~s~ 543 (630)
+++ .|+.|++||+.+++....+ .|...+..++|+|+++. +++++.++.|
T Consensus 270 ~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~------~~~~~~~~~~~~~~g~~l~~~~~~~~~v---------------- 327 (433)
T 3bws_A 270 IAQFSASNQESGGGRLGIYSMDKEKLIDTI------GPPGNKRHIVSGNTENKIYVSDMCCSKI---------------- 327 (433)
T ss_dssp EEEEESCTTCSCCEEEEEEETTTTEEEEEE------EEEECEEEEEECSSTTEEEEEETTTTEE----------------
T ss_pred EEECCCCccccCCCeEEEEECCCCcEEeec------cCCCCcceEEECCCCCEEEEEecCCCEE----------------
Confidence 988 5899999999988766552 44567889999999974 5666888988
Q ss_pred CccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEEC---------------CCcEEEEeCCCCcEEEEEec
Q 006825 544 DHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSM---------------DKTVRLWHLSSKTCLKIFSH 606 (630)
Q Consensus 544 d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~---------------DgtVrIWDl~tg~~l~t~~H 606 (630)
.+|++ +++.+..+. |...+.+++|+|+ ++|++++. ||.|++||+.+++++..+.+
T Consensus 328 -------~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~ 399 (433)
T 3bws_A 328 -------EVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA 399 (433)
T ss_dssp -------EEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC
T ss_pred -------EEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC
Confidence 78888 556666665 7788999999999 78888776 57999999999999999987
Q ss_pred CCceEEEE-cCCCcEEEEec
Q 006825 607 SDYDISLV-DRLMLRFAYGA 625 (630)
Q Consensus 607 ~~~V~sVa-s~~~~~lAsgs 625 (630)
...+.+++ ++++..+++++
T Consensus 400 ~~~~~~~~~s~dg~~l~~~~ 419 (433)
T 3bws_A 400 GNQPTGLDVSPDNRYLVISD 419 (433)
T ss_dssp SSSEEEEEECTTSCEEEEEE
T ss_pred CCCCceEEEcCCCCEEEEEE
Confidence 77899999 88888877654
No 122
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.92 E-value=1.9e-23 Score=221.81 Aligned_cols=253 Identities=9% Similarity=-0.040 Sum_probs=170.5
Q ss_pred eEeecCCCccEecccCCCC---ceeEEecCCccCCEEEEEEcCCCCeEE----------------eecCCCCCcc---cc
Q 006825 351 VEEGNKDSFDLNNNGSSGG---GMKSKKKGSWFKSIRTVASSVTGHKER----------------RSSDERDTSS---EK 408 (630)
Q Consensus 351 laSgS~D~tvr~vWD~~tG---~~~~~lk~gH~~~V~sVAfSpdG~~la----------------sgS~D~dt~s---~~ 408 (630)
+++++ ..+|+ +|++..+ +.+++++ +|..+|..|+|+||-.-|+ .+.+|+..+. ..
T Consensus 57 ~~~~~-~~~v~-lw~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~ 133 (356)
T 2w18_A 57 IITAC-EDVVS-LWKALDAWQWEKLYTWH-FAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKS 133 (356)
T ss_dssp EEEEE-SSEEE-EEEESSSSBEEEEEEEE-CCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEE
T ss_pred EEEec-cceEE-EcccCCCccceeeEEEe-ccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeC
Confidence 34444 46888 9999999 8899998 8998887777777443222 2222210000 12
Q ss_pred CCcceEEEeecCCCeEEEec---CCcEEEEEeCCC-CcccceeeeeEecccCcCEEEEEEcc---CCCEEEEEeCCCcEE
Q 006825 409 GGRRSSSATDDSQDVSFHGQ---ERVRVRQYGKSC-KDLTALYKCQEIQAHNGSIWSIKFSL---DGRYLASAGEDCVIH 481 (630)
Q Consensus 409 gh~~~Vsa~~~s~d~l~Sgs---~Dg~VriWd~~~-~el~~~~~v~tL~gHt~~V~sVaFSp---DG~~LASgS~DgtIr 481 (630)
+|...|..+ ....++..+ .|.+|++|++.. ++ .+..+.+|...+..++|++ ++.+||||+.|++||
T Consensus 134 g~~~~v~~l--~~g~lv~ss~~g~d~~V~~~~~s~dG~-----~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIk 206 (356)
T 2w18_A 134 GNIKAVLGL--TKRRLVSSSGTLSDQQVEVMTFAEDGG-----GKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIV 206 (356)
T ss_dssp EEEEEEEEE--TTTEEEEEESSSTTCEEEEEEECTTSC-----EEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEE
T ss_pred CCeEEEEec--CCCcEEEecccCCCCcEEEEEECCCCc-----eeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEE
Confidence 233334433 111233332 489999999854 32 4567788999999999999 779999999999999
Q ss_pred EEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCce
Q 006825 482 VWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPI 560 (630)
Q Consensus 482 VWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l 560 (630)
|||+.+++++.++... ..+...+.+++|+|+|.++++++.+..+ | ...+.+.+..+ ++|+. +++.+
T Consensus 207 IWDl~TGk~l~tL~g~--~~~v~~v~~vafSpdG~~lvs~s~~~~~--w------~laSGs~D~tI---klWd~~tgk~l 273 (356)
T 2w18_A 207 IWNLKTGQLLKKMHID--DSYQASVCHKAYSEMGLLFIVLSHPCAK--E------SESLRSPVFQL---IVINPKTTLSV 273 (356)
T ss_dssp EEETTTCCEEEEEECC--C---CCCEEEEEEETTEEEEEEC--------------------CCEEE---EEEETTTTEEE
T ss_pred EEECCCCcEEEEEcCC--CcceeeeEEEEECCCCCEEEEeccCCCc--c------eeeccCCCcEE---EEEECCCCEEE
Confidence 9999999999886210 1123467788999999988665433221 1 11233334444 88888 67776
Q ss_pred EEe-----ccCCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceE-EEE-cCCCcEEEEecce
Q 006825 561 CSF-----QGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDI-SLV-DRLMLRFAYGAFL 627 (630)
Q Consensus 561 ~tL-----~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~-sVa-s~~~~~lAsgs~~ 627 (630)
.++ .||...+.+..++ ..++++|+.|++|||||+.++++++++. |.+.|. +++ +|++.++++++.+
T Consensus 274 ~v~~~~~p~Gh~~~~lsg~~s-g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D 347 (356)
T 2w18_A 274 GVMLYCLPPGQAGRFLEGDVK-DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKD 347 (356)
T ss_dssp EEEEECCCTTCCCCEEEEEEE-TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTT
T ss_pred EEEEeeccCCCcceeEccccC-CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECC
Confidence 665 4888777666655 3789999999999999999999999998 877665 577 9999999999876
No 123
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.91 E-value=1e-22 Score=214.31 Aligned_cols=246 Identities=10% Similarity=-0.018 Sum_probs=166.8
Q ss_pred EEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCe
Q 006825 318 VKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHK 394 (630)
Q Consensus 318 l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~ 394 (630)
++...+.+++ +++.+|...|.+|+|+| .|++|+.| .++ +|++.+++...... ...+..+++.+++++
T Consensus 3 i~s~~~~~~~-----~~~~~h~~~V~~v~fs~dg~~la~g~~~-~~~-iw~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 72 (355)
T 3vu4_A 3 LGSMITRNPI-----VPENHVSNPVTDYEFNQDQSCLILSTLK-SFE-IYNVHPVAHIMSQE---MRHLSKVRMLHRTNY 72 (355)
T ss_dssp ---------------------CCCCCEEEECTTSSEEEEECSS-EEE-EEEETTEEEEEEEE---CSCCCEEEECTTSSE
T ss_pred cccccccCCc-----cccccCCCceEEEEECCCCCEEEEEcCC-EEE-EEecCCcceeeeee---cCCeEEEEEcCCCCE
Confidence 4445555555 67789999999999999 68888766 578 99999887766544 224777888877655
Q ss_pred EEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEE
Q 006825 395 ERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASA 474 (630)
Q Consensus 395 lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASg 474 (630)
++ ++++.|++|++||..+++ ++.++. |...|.+++|+++. ++.+
T Consensus 73 ~~----------------------------~~~~~d~~v~iWd~~~~~-----~~~~~~-~~~~v~~v~~~~~~--~~~~ 116 (355)
T 3vu4_A 73 VA----------------------------FVTGVKEVVHIWDDVKKQ-----DVSRIK-VDAPVKDLFLSREF--IVVS 116 (355)
T ss_dssp EE----------------------------EECSSTTEEEEEETTTTE-----EEEEEE-CSSCEEEEEECSSE--EEEE
T ss_pred EE----------------------------EEECCccEEEEEECCCCc-----EEEEEE-CCCceEEEEEcCCE--EEEE
Confidence 43 566777899999998775 355565 67799999998875 4443
Q ss_pred eCCCcEEEEECcCC-ceeeeeecccccCcccceEEEEECCCCCEEEE--eeCCCeeeeecccccccccccccCccccccE
Q 006825 475 GEDCVIHVWQVVES-ERKGELLEKQEDGHLNMLLLANGSPEPTSLSP--KHLDNHLEKKRRGRSINRKSLSLDHMVVPET 551 (630)
Q Consensus 475 S~DgtIrVWDl~tg-~~~~~l~~~~~~gh~~~V~svafSpdg~~las--gs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~ 551 (630)
.|+.|+|||+.++ +.+..+. . ....+++++ .+++. ++.++.|++|+............ .
T Consensus 117 -~~~~i~i~d~~~~~~~~~~~~-----~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~-------~ 178 (355)
T 3vu4_A 117 -YGDVISVFKFGNPWKRITDDI-----R---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQ-------G 178 (355)
T ss_dssp -ETTEEEEEESSTTCCBSSCCE-----E---EEEEEEEET--TEEEEEESSCTTCEEEEECCC-----------------
T ss_pred -EcCEEEEEECCCCceeeEEec-----c---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccc-------c
Confidence 3789999999987 5555531 1 334556666 55555 68899994444322100000000 0
Q ss_pred EEeCCCCc-eEEeccCCCCEEEEEEcCC-CeEEEEECCCc-EEEEeCCCCcEEEEEe---cCCceEEEE-cCCCcEEEEe
Q 006825 552 VFALSDKP-ICSFQGHLDDVLDLSWSKS-QHLLSSSMDKT-VRLWHLSSKTCLKIFS---HSDYDISLV-DRLMLRFAYG 624 (630)
Q Consensus 552 Vwdlsgk~-l~tL~GHs~~V~sLafSPd-~~LaSgS~Dgt-VrIWDl~tg~~l~t~~---H~~~V~sVa-s~~~~~lAsg 624 (630)
.-...-++ +..+.+|...|++++|+|+ .+|+||+.|++ |+|||+.+++++.++. |...|++++ +|++..++++
T Consensus 179 ~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~ 258 (355)
T 3vu4_A 179 VQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVV 258 (355)
T ss_dssp --------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEE
T ss_pred ccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEE
Confidence 00000012 7889999999999999999 99999999999 9999999999999997 999999999 9999999998
Q ss_pred cce
Q 006825 625 AFL 627 (630)
Q Consensus 625 s~~ 627 (630)
+.+
T Consensus 259 s~d 261 (355)
T 3vu4_A 259 SDK 261 (355)
T ss_dssp ETT
T ss_pred ECC
Confidence 754
No 124
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=2.1e-23 Score=241.90 Aligned_cols=224 Identities=18% Similarity=0.155 Sum_probs=185.5
Q ss_pred EecCCccCCEEEEEEcCCCCeEEeecCCC-----CC--------ccccCCcceEEEeecCCC--e--EEEecCCcEEEEE
Q 006825 374 KKKGSWFKSIRTVASSVTGHKERRSSDER-----DT--------SSEKGGRRSSSATDDSQD--V--SFHGQERVRVRQY 436 (630)
Q Consensus 374 ~lk~gH~~~V~sVAfSpdG~~lasgS~D~-----dt--------~s~~gh~~~Vsa~~~s~d--~--l~Sgs~Dg~VriW 436 (630)
.+. ||.+.|++++|+|+|+++++|+.|+ +. ..+.+|...|.++.++++ + +++|+.|++|++|
T Consensus 4 ~l~-gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw 82 (753)
T 3jro_A 4 IAN-AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 82 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred ecc-cCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence 455 9999999999999999999999887 21 127789999999999865 4 9999999999999
Q ss_pred eCCCCcccceeeeeEecccCcCEEEEEEccC--CCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECC-
Q 006825 437 GKSCKDLTALYKCQEIQAHNGSIWSIKFSLD--GRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSP- 513 (630)
Q Consensus 437 d~~~~el~~~~~v~tL~gHt~~V~sVaFSpD--G~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSp- 513 (630)
++.+++. ..+..+.+|...|++++|+|+ +++|++|+.|++|++||+.++....... ..+|...|.+++|+|
T Consensus 83 d~~~~~~---~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~---~~~~~~~v~~l~~~p~ 156 (753)
T 3jro_A 83 KEENGRW---SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII---IDAHAIGVNSASWAPA 156 (753)
T ss_dssp EEETTEE---EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEE---EECCSSCEEEEEECCC
T ss_pred ECCCCcc---cccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeE---eecCCCceEEEEecCc
Confidence 9876542 256778999999999999999 9999999999999999998874433321 468899999999999
Q ss_pred ------------CCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CC----CceEEeccCCCCEEEEEEc
Q 006825 514 ------------EPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SD----KPICSFQGHLDDVLDLSWS 576 (630)
Q Consensus 514 ------------dg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sg----k~l~tL~GHs~~V~sLafS 576 (630)
++.++++++.|+.| ++|++ ++ .++.++.+|...|++++|+
T Consensus 157 ~~~~~~~~~~~~d~~~l~sgs~dg~I-----------------------~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~s 213 (753)
T 3jro_A 157 TIEEDGEHNGTKESRKFVTGGADNLV-----------------------KIWKYNSDAQTYVLESTLEGHSDWVRDVAWS 213 (753)
T ss_dssp C---------CGGGCCEEEEETTSCE-----------------------EEEEEETTTTEEEEEEEECCCSSCEEEEEEC
T ss_pred ccccccccccCCCCCEEEEEECCCeE-----------------------EEEeccCCcccceeeeeecCCCCcEEEEEec
Confidence 58999999999999 66666 33 4567889999999999999
Q ss_pred CC----CeEEEEECCCcEEEEeCCCCc-----EEEEEe-cCCceEEEE-cCCCcEEEEecce
Q 006825 577 KS----QHLLSSSMDKTVRLWHLSSKT-----CLKIFS-HSDYDISLV-DRLMLRFAYGAFL 627 (630)
Q Consensus 577 Pd----~~LaSgS~DgtVrIWDl~tg~-----~l~t~~-H~~~V~sVa-s~~~~~lAsgs~~ 627 (630)
|+ .+|++|+.||+|+|||+.+++ .+.... |...|++++ +|++..+++++.+
T Consensus 214 p~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~D 275 (753)
T 3jro_A 214 PTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGD 275 (753)
T ss_dssp CCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSS
T ss_pred cCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCC
Confidence 97 578999999999999999864 222222 889999999 8888888888654
No 125
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.90 E-value=7.8e-22 Score=212.91 Aligned_cols=260 Identities=9% Similarity=-0.073 Sum_probs=202.0
Q ss_pred eeEEEEc--CCCceEeeecceeeecCccceeEEEeec-----------------ceEeecCC------CccEecccCCCC
Q 006825 315 WKKVKEV--GTGRQLTIEEFEMCVGHSPIVQELMRRQ-----------------NVEEGNKD------SFDLNNNGSSGG 369 (630)
Q Consensus 315 ~~~l~dv--~TG~~lt~eef~~l~GHs~~V~~Lafs~-----------------~laSgS~D------~tvr~vWD~~tG 369 (630)
..+|||+ .+|+++.- .++.+|...|..+++++ .++.++.+ ++++ +||+. |
T Consensus 94 ~i~lwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~-i~d~~-g 168 (415)
T 2hqs_A 94 AYQLVDTGGAPGTVLAQ---NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELR-VSDYD-G 168 (415)
T ss_dssp EEEEEECSSSTTCEEEE---EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEE-EEETT-S
T ss_pred EEEEEeCCCCCCCEEee---eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEE-EEcCC-C
Confidence 4689999 89987611 34778888888777653 45555554 7899 99997 5
Q ss_pred ceeEEecCCccCCEEEEEEcCCCCeEEeecCCC----------CCc---cccCCcceEEEeecCCCe--EE-EecCCc--
Q 006825 370 GMKSKKKGSWFKSIRTVASSVTGHKERRSSDER----------DTS---SEKGGRRSSSATDDSQDV--SF-HGQERV-- 431 (630)
Q Consensus 370 ~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~----------dt~---s~~gh~~~Vsa~~~s~d~--l~-Sgs~Dg-- 431 (630)
...+.+. +|...|.+++|+|||++++.++.+. .++ .+.+|...+.++.|++++ ++ +++.++
T Consensus 169 ~~~~~l~-~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~ 247 (415)
T 2hqs_A 169 YNQFVVH-RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSL 247 (415)
T ss_dssp CSCEEEE-EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred CCCEEEe-CCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCc
Confidence 5677777 8999999999999999999988763 111 255677789999999998 44 666554
Q ss_pred EEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeC-CC--cEEEEECcCCceeeeeecccccCcccceEE
Q 006825 432 RVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE-DC--VIHVWQVVESERKGELLEKQEDGHLNMLLL 508 (630)
Q Consensus 432 ~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~-Dg--tIrVWDl~tg~~~~~l~~~~~~gh~~~V~s 508 (630)
.|++||..+++ ...+..|...+.+++|+|||++|+.++. ++ .|.+||+.+++.. .+ ..+...+..
T Consensus 248 ~i~~~d~~~~~------~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~-~l-----~~~~~~~~~ 315 (415)
T 2hqs_A 248 NLYVMDLASGQ------IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RI-----TWEGSQNQD 315 (415)
T ss_dssp EEEEEETTTCC------EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-EC-----CCSSSEEEE
T ss_pred eEEEEECCCCC------EEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE-EE-----ecCCCcccC
Confidence 59999998764 3567889999999999999999998886 45 6777898877643 22 445567889
Q ss_pred EEECCCCCEEEEeeCC---CeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEE
Q 006825 509 ANGSPEPTSLSPKHLD---NHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSS 584 (630)
Q Consensus 509 vafSpdg~~lasgs~D---g~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSg 584 (630)
++|+|+|++|+.++.+ ..| .+|++.+..+..+..|. .+.+++|+|+ ++|+++
T Consensus 316 ~~~spdG~~l~~~~~~~g~~~i-----------------------~~~d~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~ 371 (415)
T 2hqs_A 316 ADVSSDGKFMVMVSSNGGQQHI-----------------------AKQDLATGGVQVLSSTF-LDETPSLAPNGTMVIYS 371 (415)
T ss_dssp EEECTTSSEEEEEEECSSCEEE-----------------------EEEETTTCCEEECCCSS-SCEEEEECTTSSEEEEE
T ss_pred eEECCCCCEEEEEECcCCceEE-----------------------EEEECCCCCEEEecCCC-CcCCeEEcCCCCEEEEE
Confidence 9999999999988764 345 78888555556777775 8999999999 889988
Q ss_pred ECCC---cEEEEeCCCCcEEEEEe-cCCceEEEE-cCC
Q 006825 585 SMDK---TVRLWHLSSKTCLKIFS-HSDYDISLV-DRL 617 (630)
Q Consensus 585 S~Dg---tVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~ 617 (630)
+.|+ .|++||+. +.++..+. |.+.|.+++ +|.
T Consensus 372 s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~ 408 (415)
T 2hqs_A 372 SSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPY 408 (415)
T ss_dssp EEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCC
T ss_pred EcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCccccc
Confidence 8887 89999997 55566776 999999999 664
No 126
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.90 E-value=2.7e-21 Score=205.33 Aligned_cols=226 Identities=9% Similarity=-0.079 Sum_probs=181.1
Q ss_pred eeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEE-----ecCCccCCEEEEEEcCCCCeEEeecCCCCC
Q 006825 333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSK-----KKGSWFKSIRTVASSVTGHKERRSSDERDT 404 (630)
Q Consensus 333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~-----lk~gH~~~V~sVAfSpdG~~lasgS~D~dt 404 (630)
..+..+. .+.+++|+| .+++++.|++++ +||+.+|+.+.. +. +|...|.+++|+++|+++
T Consensus 117 ~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~-~~d~~~g~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~--------- 184 (433)
T 3bws_A 117 SRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMD-VLDINSGQTVRLSPPEKYK-KKLGFVETISIPEHNELW--------- 184 (433)
T ss_dssp EEEECSS-CBCCCEESSSSEEEEEBTTSSSEE-EEETTTCCEEEECCCHHHH-TTCCEEEEEEEGGGTEEE---------
T ss_pred EEEcCCC-CceEEEEeCCCeEEEEeCCCCeEE-EEECCCCeEeeecCccccc-ccCCceeEEEEcCCCEEE---------
Confidence 3344443 345888887 678888899999 999999998873 44 899999999999988766
Q ss_pred ccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEE-EEeCCCcEEEE
Q 006825 405 SSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLA-SAGEDCVIHVW 483 (630)
Q Consensus 405 ~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LA-SgS~DgtIrVW 483 (630)
++++.|+.|++||..+++ .+..+..|...+.+++|+|++++|+ +++.|++|++|
T Consensus 185 --------------------~s~~~d~~v~~~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~ 239 (433)
T 3bws_A 185 --------------------VSQMQANAVHVFDLKTLA-----YKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVI 239 (433)
T ss_dssp --------------------EEEGGGTEEEEEETTTCC-----EEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred --------------------EEECCCCEEEEEECCCce-----EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEE
Confidence 455667899999997764 4567789999999999999999885 55589999999
Q ss_pred ECcCCceeeeeecccccCcccceEEEEECCCCCEEEEee--------CCCeeeeecccccccccccccCccccccEEEeC
Q 006825 484 QVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKH--------LDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL 555 (630)
Q Consensus 484 Dl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs--------~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl 555 (630)
|+.+++.+..+ .. ...+..++|+|+++++++++ .|+.| .+|++
T Consensus 240 d~~~~~~~~~~-----~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i-----------------------~~~d~ 290 (433)
T 3bws_A 240 DRKTKLEIRKT-----DK-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRL-----------------------GIYSM 290 (433)
T ss_dssp ETTTTEEEEEC-----CC-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEE-----------------------EEEET
T ss_pred ECCCCcEEEEe-----cC-CCCceEEEEcCCCCEEEEEECCCCccccCCCeE-----------------------EEEEC
Confidence 99988876663 22 34589999999999998887 36666 78887
Q ss_pred -CCCceEEeccCCCCEEEEEEcCC-C-eEEEEECCCcEEEEeCCCCcEEEEEecCCceEEEE-cCCCcEEEEec
Q 006825 556 -SDKPICSFQGHLDDVLDLSWSKS-Q-HLLSSSMDKTVRLWHLSSKTCLKIFSHSDYDISLV-DRLMLRFAYGA 625 (630)
Q Consensus 556 -sgk~l~tL~GHs~~V~sLafSPd-~-~LaSgS~DgtVrIWDl~tg~~l~t~~H~~~V~sVa-s~~~~~lAsgs 625 (630)
+++.+.. ..|...+.+++|+|+ + ++++++.|++|++||+.+++++..+.+...+.+++ ++++..++++.
T Consensus 291 ~~~~~~~~-~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 363 (433)
T 3bws_A 291 DKEKLIDT-IGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSC 363 (433)
T ss_dssp TTTEEEEE-EEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEE
T ss_pred CCCcEEee-ccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEe
Confidence 4554444 457778999999999 5 45777999999999999999999999888999999 88887666654
No 127
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.89 E-value=7e-21 Score=199.39 Aligned_cols=234 Identities=10% Similarity=0.016 Sum_probs=184.9
Q ss_pred eEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeE-EeecCCC-----C--Ccc----ccCCcceEEEee
Q 006825 351 VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKE-RRSSDER-----D--TSS----EKGGRRSSSATD 418 (630)
Q Consensus 351 laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~l-asgS~D~-----d--t~s----~~gh~~~Vsa~~ 418 (630)
+++++.|++++ +||+.+++.+..+. +|. .+.+++|+|+|+++ ++++.+. + +.. ...+ ..+.+++
T Consensus 5 ~vs~~~d~~v~-v~d~~~~~~~~~~~-~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~-~~v~~~~ 80 (391)
T 1l0q_A 5 YIANSESDNIS-VIDVTSNKVTATIP-VGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG-SSPQGVA 80 (391)
T ss_dssp EEEETTTTEEE-EEETTTTEEEEEEE-CSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS-SSEEEEE
T ss_pred EEEcCCCCEEE-EEECCCCeEEEEee-cCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECC-CCccceE
Confidence 78999999999 99999999999888 665 58999999999976 6666665 1 221 2223 3788899
Q ss_pred cCCCe--E-EEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEE-EEEeCCCcEEEEECcCCceeeee
Q 006825 419 DSQDV--S-FHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYL-ASAGEDCVIHVWQVVESERKGEL 494 (630)
Q Consensus 419 ~s~d~--l-~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~L-ASgS~DgtIrVWDl~tg~~~~~l 494 (630)
+++++ + +++..+++|++||..+++. +..+..| ..+.+++|+|+|++| ++++.|+.|++||+.+++.+..+
T Consensus 81 ~spdg~~l~~~~~~~~~v~v~d~~~~~~-----~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~ 154 (391)
T 1l0q_A 81 VSPDGKQVYVTNMASSTLSVIDTTSNTV-----AGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV 154 (391)
T ss_dssp ECTTSSEEEEEETTTTEEEEEETTTTEE-----EEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred ECCCCCEEEEEECCCCEEEEEECCCCeE-----EEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence 99887 4 5677889999999987753 4445544 578999999999977 78889999999999998877664
Q ss_pred ecccccCcccceEEEEECCCCCEE-EEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEE
Q 006825 495 LEKQEDGHLNMLLLANGSPEPTSL-SPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLD 572 (630)
Q Consensus 495 ~~~~~~gh~~~V~svafSpdg~~l-asgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~s 572 (630)
..+ ..+..++|+|+++++ +++..++.| .+|++ +++.+..+. |...+.+
T Consensus 155 -----~~~-~~~~~~~~~~dg~~l~~~~~~~~~v-----------------------~~~d~~~~~~~~~~~-~~~~~~~ 204 (391)
T 1l0q_A 155 -----SVG-RSPKGIAVTPDGTKVYVANFDSMSI-----------------------SVIDTVTNSVIDTVK-VEAAPSG 204 (391)
T ss_dssp -----ECC-SSEEEEEECTTSSEEEEEETTTTEE-----------------------EEEETTTTEEEEEEE-CSSEEEE
T ss_pred -----ecC-CCcceEEECCCCCEEEEEeCCCCEE-----------------------EEEECCCCeEEEEEe-cCCCccc
Confidence 223 456899999999877 567788888 78887 455555554 5668999
Q ss_pred EEEcCC-CeEEEEE---CCCcEEEEeCCCCcEEEEEecCCceEEEE-cCCCcEE-EEe
Q 006825 573 LSWSKS-QHLLSSS---MDKTVRLWHLSSKTCLKIFSHSDYDISLV-DRLMLRF-AYG 624 (630)
Q Consensus 573 LafSPd-~~LaSgS---~DgtVrIWDl~tg~~l~t~~H~~~V~sVa-s~~~~~l-Asg 624 (630)
++|+|+ ++|++++ .|+.|++||+.+++++..+.....+.+++ ++++..+ +++
T Consensus 205 ~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~ 262 (391)
T 1l0q_A 205 IAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVAL 262 (391)
T ss_dssp EEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEE
T ss_pred eEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEEEEccCCCEEEEEc
Confidence 999999 7888877 79999999999999999998555688888 8888766 443
No 128
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.86 E-value=3.3e-20 Score=183.39 Aligned_cols=244 Identities=10% Similarity=-0.017 Sum_probs=183.7
Q ss_pred eEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCC-CceeEEecCCccCCEEEEEEcCC
Q 006825 316 KKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSG-GGMKSKKKGSWFKSIRTVASSVT 391 (630)
Q Consensus 316 ~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~t-G~~~~~lk~gH~~~V~sVAfSpd 391 (630)
.++|++.+|+.. .+.+|...|..++|+| .|++++ ++.++ +||+.+ ++........+...|.+++|+|+
T Consensus 24 i~~~d~~~~~~~------~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~-~~d~~~~~~~~~~~~~~~~~~~~~~~~spd 95 (297)
T 2ojh_A 24 IEIFNIRTRKMR------VVWQTPELFEAPNWSPDGKYLLLNS-EGLLY-RLSLAGDPSPEKVDTGFATICNNDHGISPD 95 (297)
T ss_dssp EEEEETTTTEEE------EEEEESSCCEEEEECTTSSEEEEEE-TTEEE-EEESSSCCSCEECCCTTCCCBCSCCEECTT
T ss_pred EEEEeCCCCcee------eeccCCcceEeeEECCCCCEEEEEc-CCeEE-EEeCCCCCCceEeccccccccccceEECCC
Confidence 567777777655 4556888999999999 577766 78999 999999 88777666333578899999999
Q ss_pred CCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEE
Q 006825 392 GHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYL 471 (630)
Q Consensus 392 G~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~L 471 (630)
|++++.++.+. .....|+.|+..++. ...+..+. .+..++|+|||++|
T Consensus 96 g~~l~~~~~~~-------------------------~~~~~l~~~~~~~~~------~~~~~~~~-~~~~~~~spdg~~l 143 (297)
T 2ojh_A 96 GALYAISDKVE-------------------------FGKSAIYLLPSTGGT------PRLMTKNL-PSYWHGWSPDGKSF 143 (297)
T ss_dssp SSEEEEEECTT-------------------------TSSCEEEEEETTCCC------CEECCSSS-SEEEEEECTTSSEE
T ss_pred CCEEEEEEeCC-------------------------CCcceEEEEECCCCc------eEEeecCC-CccceEECCCCCEE
Confidence 99887654321 023456777765553 23344444 49999999999988
Q ss_pred E-EEeCCCcEEEEECcCC-ceeeeeecccccCcccceEEEEECCCCCEEEEee-CCCeeeeecccccccccccccCcccc
Q 006825 472 A-SAGEDCVIHVWQVVES-ERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKH-LDNHLEKKRRGRSINRKSLSLDHMVV 548 (630)
Q Consensus 472 A-SgS~DgtIrVWDl~tg-~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs-~Dg~I~i~~~~~~~~~~s~s~d~~i~ 548 (630)
+ +++.|+.++||++... ..... ...+...+..++|+|++++++.++ .++.+
T Consensus 144 ~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~--------------------- 197 (297)
T 2ojh_A 144 TYCGIRDQVFDIYSMDIDSGVETR-----LTHGEGRNDGPDYSPDGRWIYFNSSRTGQM--------------------- 197 (297)
T ss_dssp EEEEEETTEEEEEEEETTTCCEEE-----CCCSSSCEEEEEECTTSSEEEEEECTTSSC---------------------
T ss_pred EEEECCCCceEEEEEECCCCcceE-----cccCCCccccceECCCCCEEEEEecCCCCc---------------------
Confidence 7 7889999999996432 22233 256677899999999999887765 47766
Q ss_pred ccEEEeC--CCCceEEeccCCCCEEEEEEcCC-CeEEEEECC-----------CcEEEEeCCCCcE--EEEEe-cCCceE
Q 006825 549 PETVFAL--SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMD-----------KTVRLWHLSSKTC--LKIFS-HSDYDI 611 (630)
Q Consensus 549 ~~~Vwdl--sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~D-----------gtVrIWDl~tg~~--l~t~~-H~~~V~ 611 (630)
.+|.+ .+..+..+..|...+..++|+|+ ++|+.++.+ +.|++||+.+++. +..+. |...|.
T Consensus 198 --~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 275 (297)
T 2ojh_A 198 --QIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMN 275 (297)
T ss_dssp --EEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSC
T ss_pred --cEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccc
Confidence 56655 56778888889889999999999 888888876 5699999998865 44443 888899
Q ss_pred EEE-cCCCcEEEEecce
Q 006825 612 SLV-DRLMLRFAYGAFL 627 (630)
Q Consensus 612 sVa-s~~~~~lAsgs~~ 627 (630)
+++ +|++..+++++..
T Consensus 276 ~~~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 276 SPNWSPDGDEFAYVRYF 292 (297)
T ss_dssp SCCBCTTSSEEEEEEEC
T ss_pred cceECCCCCEEEEEEec
Confidence 998 8899888877654
No 129
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.85 E-value=5.3e-19 Score=190.72 Aligned_cols=219 Identities=12% Similarity=0.032 Sum_probs=175.5
Q ss_pred eeEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCC---ccEecccCCCCceeEEecCCccCCEEEEEE
Q 006825 315 WKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDS---FDLNNNGSSGGGMKSKKKGSWFKSIRTVAS 388 (630)
Q Consensus 315 ~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~---tvr~vWD~~tG~~~~~lk~gH~~~V~sVAf 388 (630)
..++||+.++ .+ ..+.+|...|..++|+| .|++++.|+ +++ +||+.+|+.. .+. +|...+.+++|
T Consensus 160 ~i~i~d~~g~-~~-----~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~-~~d~~tg~~~-~l~-~~~~~~~~~~~ 230 (415)
T 2hqs_A 160 ELRVSDYDGY-NQ-----FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALV-IQTLANGAVR-QVA-SFPRHNGAPAF 230 (415)
T ss_dssp EEEEEETTSC-SC-----EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEE-EEETTTCCEE-EEE-CCSSCEEEEEE
T ss_pred eEEEEcCCCC-CC-----EEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEE-EEECCCCcEE-Eee-cCCCcccCEEE
Confidence 4567777643 33 67888999999999999 699998885 899 9999999875 455 78889999999
Q ss_pred cCCCCeEE-eecCCC---------CC---ccccCCcceEEEeecCCCe--EEEecC-Cc--EEEEEeCCCCcccceeeee
Q 006825 389 SVTGHKER-RSSDER---------DT---SSEKGGRRSSSATDDSQDV--SFHGQE-RV--RVRQYGKSCKDLTALYKCQ 450 (630)
Q Consensus 389 SpdG~~la-sgS~D~---------dt---~s~~gh~~~Vsa~~~s~d~--l~Sgs~-Dg--~VriWd~~~~el~~~~~v~ 450 (630)
+|||++|+ +++.++ .+ ..+.+|...+..+.|++++ ++.++. ++ .|++|+..+++ ..
T Consensus 231 spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~------~~ 304 (415)
T 2hqs_A 231 SPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA------PQ 304 (415)
T ss_dssp CTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC------CE
T ss_pred cCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC------EE
Confidence 99999888 665544 11 2266778889999999998 555554 44 78888987764 24
Q ss_pred EecccCcCEEEEEEccCCCEEEEEeCC---CcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCC--
Q 006825 451 EIQAHNGSIWSIKFSLDGRYLASAGED---CVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN-- 525 (630)
Q Consensus 451 tL~gHt~~V~sVaFSpDG~~LASgS~D---gtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg-- 525 (630)
.+..|...+.+++|+|||++|++++.+ ..|++||+.+++.. .+ ..+. .+..++|+|+|++|++++.++
T Consensus 305 ~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l-----~~~~-~~~~~~~spdg~~l~~~s~~~~~ 377 (415)
T 2hqs_A 305 RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VL-----SSTF-LDETPSLAPNGTMVIYSSSQGMG 377 (415)
T ss_dssp ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-EC-----CCSS-SCEEEEECTTSSEEEEEEEETTE
T ss_pred EEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-Ee-----cCCC-CcCCeEEcCCCCEEEEEEcCCCc
Confidence 466688889999999999999998865 58999999987763 32 3343 788999999999999887766
Q ss_pred -eeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC
Q 006825 526 -HLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS 578 (630)
Q Consensus 526 -~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd 578 (630)
.| .+|++.++.+..+.+|.+.|.+++|+|.
T Consensus 378 ~~l-----------------------~~~d~~g~~~~~l~~~~~~v~~~~~~~~ 408 (415)
T 2hqs_A 378 SVL-----------------------NLVSTDGRFKARLPATDGQVKFPAWSPY 408 (415)
T ss_dssp EEE-----------------------EEEETTSCCEEECCCSSSEEEEEEECCC
T ss_pred cEE-----------------------EEEECCCCcEEEeeCCCCCCcCCccccc
Confidence 45 7888889999999999999999999996
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.83 E-value=9.2e-19 Score=196.37 Aligned_cols=271 Identities=12% Similarity=0.021 Sum_probs=204.3
Q ss_pred eeEEEEcCCCceEeeecceeee-cCccceeEEEeec---ceEeecCCCccEecccC--CCCceeEEecCCccCCEEEEEE
Q 006825 315 WKKVKEVGTGRQLTIEEFEMCV-GHSPIVQELMRRQ---NVEEGNKDSFDLNNNGS--SGGGMKSKKKGSWFKSIRTVAS 388 (630)
Q Consensus 315 ~~~l~dv~TG~~lt~eef~~l~-GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~--~tG~~~~~lk~gH~~~V~sVAf 388 (630)
...+||..||+.+ .++. ||. +..++|+| +|++++.|++|+ +||+ .+++.+.++. +...++.|+|
T Consensus 160 ~V~v~D~~t~~~~-----~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~-v~D~~~~t~~~~~~i~--~g~~p~~va~ 229 (543)
T 1nir_A 160 QIALVDGDSKKIV-----KVIDTGYA--VHISRMSASGRYLLVIGRDARID-MIDLWAKEPTKVAEIK--IGIEARSVES 229 (543)
T ss_dssp EEEEEETTTCCEE-----EEEECSTT--EEEEEECTTSCEEEEEETTSEEE-EEETTSSSCEEEEEEE--CCSEEEEEEE
T ss_pred eEEEEECCCceEE-----EEEecCcc--cceEEECCCCCEEEEECCCCeEE-EEECcCCCCcEEEEEe--cCCCcceEEe
Confidence 3578899999888 6666 555 88999999 799999999999 9999 8999988887 3456899999
Q ss_pred cC----CCCeEEeecC-CC-------CCcc----ccC----------C-cceEEEeecCCCe---EEEecCCcEEEEEeC
Q 006825 389 SV----TGHKERRSSD-ER-------DTSS----EKG----------G-RRSSSATDDSQDV---SFHGQERVRVRQYGK 438 (630)
Q Consensus 389 Sp----dG~~lasgS~-D~-------dt~s----~~g----------h-~~~Vsa~~~s~d~---l~Sgs~Dg~VriWd~ 438 (630)
+| ||+++++++. +. .+.. ... | ...+..+.+++++ +++...+++|++||.
T Consensus 230 sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~ 309 (543)
T 1nir_A 230 SKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNY 309 (543)
T ss_dssp CCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEEC
T ss_pred CCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEe
Confidence 99 9999988874 22 1111 111 1 2256667777654 788889999999999
Q ss_pred CCCcccceeeeeEecccCcCEEEEEEccCCCEEEEE-eCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCC-CC
Q 006825 439 SCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASA-GEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE-PT 516 (630)
Q Consensus 439 ~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASg-S~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpd-g~ 516 (630)
...+.. .+.++ .|...+..++|+|+|++|+++ ..+++|+|||+.+++.+..+... ...|......+ ++|+ +.
T Consensus 310 ~~~~~l---~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g-~~ph~g~g~~~-~~p~~g~ 383 (543)
T 1nir_A 310 KDIDNL---TVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVG-KTPHPGRGANF-VHPKYGP 383 (543)
T ss_dssp TTSSSC---EEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECS-SSBCCTTCEEE-EETTTEE
T ss_pred cCCCcc---eeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccC-CCCCCCCCccc-CCCCCcc
Confidence 765431 12234 366778899999999977655 46899999999999887765311 12354433333 4777 66
Q ss_pred EEEEee-CCCeeeeecccccccccccccCccccccEEEeC-C-------CCceEEeccCCCCEEEEEEcCC-CeEEEEE-
Q 006825 517 SLSPKH-LDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-S-------DKPICSFQGHLDDVLDLSWSKS-QHLLSSS- 585 (630)
Q Consensus 517 ~lasgs-~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-s-------gk~l~tL~GHs~~V~sLafSPd-~~LaSgS- 585 (630)
+++++. .+++| .+|+. + .+.++++.+|...+..|+|+|+ ++|++++
T Consensus 384 ~~~s~~~~d~~V-----------------------~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~ 440 (543)
T 1nir_A 384 VWSTSHLGDGSI-----------------------SLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTT 440 (543)
T ss_dssp EEEEEBSSSSEE-----------------------EEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCT
T ss_pred EEEeccCCCceE-----------------------EEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecC
Confidence 777765 57888 77776 4 6889999999999999999999 8888887
Q ss_pred ------CCCcEEEEeCCCCcEE-EEE--------e-cCCceEEEE-cCCCcEEEEe
Q 006825 586 ------MDKTVRLWHLSSKTCL-KIF--------S-HSDYDISLV-DRLMLRFAYG 624 (630)
Q Consensus 586 ------~DgtVrIWDl~tg~~l-~t~--------~-H~~~V~sVa-s~~~~~lAsg 624 (630)
.+++|.|||+.+++++ ..+ . |...|..++ ++++..+.++
T Consensus 441 ~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s 496 (543)
T 1nir_A 441 FNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFS 496 (543)
T ss_dssp TCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEE
T ss_pred CCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEE
Confidence 3789999999999887 554 2 678888888 7777777654
No 131
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.83 E-value=1.4e-18 Score=194.81 Aligned_cols=223 Identities=11% Similarity=0.029 Sum_probs=170.2
Q ss_pred eeEEEEcCCCceEeeecceeeec----------C-ccceeEEEeec----ceEeecCCCccEecccCCCCceeEEecCCc
Q 006825 315 WKKVKEVGTGRQLTIEEFEMCVG----------H-SPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGMKSKKKGSW 379 (630)
Q Consensus 315 ~~~l~dv~TG~~lt~eef~~l~G----------H-s~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~~~~lk~gH 379 (630)
...+||..|++++ .++.. | .+.|..++++| .+++...++++. +||..+++.+......+
T Consensus 249 ~v~v~D~~t~~~~-----~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~-vvd~~~~~~l~~~~i~~ 322 (543)
T 1nir_A 249 QFAIMDGETLEPK-----QIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVL-LVNYKDIDNLTVTSIGA 322 (543)
T ss_dssp EEEEEETTTCCEE-----EEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEE-EEECTTSSSCEEEEEEC
T ss_pred eEEEEeccccccc-----eeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEE-EEEecCCCcceeEEecc
Confidence 3568899999888 33332 2 34789999998 688899999999 99999877655222256
Q ss_pred cCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecc----c
Q 006825 380 FKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQA----H 455 (630)
Q Consensus 380 ~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~g----H 455 (630)
...+..++|+|+|+++. +++..+.+|.+||..++++ +.++.. |
T Consensus 323 ~~~~~~~~~spdg~~l~----------------------------va~~~~~~v~v~D~~tg~l-----~~~i~~g~~ph 369 (543)
T 1nir_A 323 APFLHDGGWDSSHRYFM----------------------------TAANNSNKVAVIDSKDRRL-----SALVDVGKTPH 369 (543)
T ss_dssp CSSCCCEEECTTSCEEE----------------------------EEEGGGTEEEEEETTTTEE-----EEEEECSSSBC
T ss_pred CcCccCceECCCCCEEE----------------------------EEecCCCeEEEEECCCCeE-----EEeeccCCCCC
Confidence 67788899999999764 3445577899999988764 444543 7
Q ss_pred CcCEEEEEEccC-CCEEEEEe-CCCcEEEEECcC-------CceeeeeecccccCcccceEEEEECCCCCEEEEeeC---
Q 006825 456 NGSIWSIKFSLD-GRYLASAG-EDCVIHVWQVVE-------SERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHL--- 523 (630)
Q Consensus 456 t~~V~sVaFSpD-G~~LASgS-~DgtIrVWDl~t-------g~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~--- 523 (630)
.+....+ ++|+ |.+++|+. .|++|.|||+.+ .+.++++ .+|...+..++++|++++|+++..
T Consensus 370 ~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l-----~~~g~~~~~v~~~pdg~~l~v~~~~~~ 443 (543)
T 1nir_A 370 PGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAEL-----QGQGGGSLFIKTHPKSSHLYVDTTFNP 443 (543)
T ss_dssp CTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEE-----ECSCSCCCCEECCTTCCEEEECCTTCS
T ss_pred CCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEE-----EcCCCCceEEEcCCCCCcEEEecCCCC
Confidence 6555444 5776 77788876 689999999988 6777775 677778888999999999999862
Q ss_pred ----CCeeeeecccccccccccccCccccccEEEeC-CCCce-EEe--------ccCCCCEEEEEEcCC-CeEEEEE---
Q 006825 524 ----DNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPI-CSF--------QGHLDDVLDLSWSKS-QHLLSSS--- 585 (630)
Q Consensus 524 ----Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l-~tL--------~GHs~~V~sLafSPd-~~LaSgS--- 585 (630)
+.+| .+|++ +++.+ ..+ ..|...|..+.|+|+ ++|+.+.
T Consensus 444 ~~~~~~~v-----------------------~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~ 500 (543)
T 1nir_A 444 DARISQSV-----------------------AVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNG 500 (543)
T ss_dssp SHHHHTCE-----------------------EEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECC
T ss_pred CcccCceE-----------------------EEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecC
Confidence 5566 78887 55555 343 456788999999999 7776552
Q ss_pred --CCCcEEEEeCCCCcEEEEEe
Q 006825 586 --MDKTVRLWHLSSKTCLKIFS 605 (630)
Q Consensus 586 --~DgtVrIWDl~tg~~l~t~~ 605 (630)
.|++|.|||..|++++++++
T Consensus 501 ~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 501 KNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp TTSCCEEEEEETTTTEEEEEEC
T ss_pred CCCCCeEEEEECCCceEEEeec
Confidence 48999999999999999987
No 132
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.82 E-value=5.9e-19 Score=201.50 Aligned_cols=317 Identities=6% Similarity=-0.081 Sum_probs=210.5
Q ss_pred CceeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeec-----ce
Q 006825 259 DSMSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEE-----FE 333 (630)
Q Consensus 259 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~ee-----f~ 333 (630)
.++++||||++|+..+... .+.....+.+|++++|+...+....... ..|+.++.++ ..
T Consensus 40 ~~~~~SpdG~~la~~~~~d--------~~~~~~~i~~~d~~~g~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~ 103 (741)
T 2ecf_A 40 MKPKVAPDGSRVTFLRGKD--------SDRNQLDLWSYDIGSGQTRLLVDSKVVL--------PGTETLSDEEKARRERQ 103 (741)
T ss_dssp EEEEECTTSSEEEEEECCS--------SCTTEEEEEEEETTTCCEEEEECGGGTC-------------------------
T ss_pred CCceEecCCCEEEEEeccC--------CCCcccEEEEEECCCCceeEccchhhcc--------cccccccchhhhhhhhh
Confidence 4589999999995555200 0011237889999998765544332110 0111111111 01
Q ss_pred eeecCccceeEEEeec---ceEeecCCCccEecccCCCCc--eeEEecCCccCCEEEEEEcCCCCeEEeecCCC------
Q 006825 334 MCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGG--MKSKKKGSWFKSIRTVASSVTGHKERRSSDER------ 402 (630)
Q Consensus 334 ~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~--~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~------ 402 (630)
.+. ....|..++|+| .|+.++. ++++ +||+.++. ....+. .|...+..++|||||++|+.++++.
T Consensus 104 ~~~-~~~~v~~~~~SpDg~~l~~~~~-~~i~-~~d~~~~~~~~~~~l~-~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~ 179 (741)
T 2ecf_A 104 RIA-AMTGIVDYQWSPDAQRLLFPLG-GELY-LYDLKQEGKAAVRQLT-HGEGFATDAKLSPKGGFVSFIRGRNLWVIDL 179 (741)
T ss_dssp ----CCEESCCCEECTTSSEEEEEET-TEEE-EEESSSCSTTSCCBCC-CSSSCEEEEEECTTSSEEEEEETTEEEEEET
T ss_pred hhc-cccCcceeEECCCCCEEEEEeC-CcEE-EEECCCCCcceEEEcc-cCCcccccccCCCCCCEEEEEeCCcEEEEec
Confidence 111 124578899999 5777776 8999 99999883 445566 7888999999999999999988654
Q ss_pred CCcc----ccCCcce----------------EEEeecCCCe--EEEecCCc-----------------------------
Q 006825 403 DTSS----EKGGRRS----------------SSATDDSQDV--SFHGQERV----------------------------- 431 (630)
Q Consensus 403 dt~s----~~gh~~~----------------Vsa~~~s~d~--l~Sgs~Dg----------------------------- 431 (630)
+++. ...+... +..+.+++++ ++.+..|.
T Consensus 180 ~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~ 259 (741)
T 2ecf_A 180 ASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDA 259 (741)
T ss_dssp TTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSC
T ss_pred CCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCC
Confidence 1111 1222221 3567888888 66665443
Q ss_pred ----EEEEEeCCC-CcccceeeeeEecccCcCEEEEEEccCCCEEEEEeC-----CCcEEEEECcCCceeeeeecccccC
Q 006825 432 ----RVRQYGKSC-KDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE-----DCVIHVWQVVESERKGELLEKQEDG 501 (630)
Q Consensus 432 ----~VriWd~~~-~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~-----DgtIrVWDl~tg~~~~~l~~~~~~g 501 (630)
.|++||..+ ++...+ .....|...|..++| |||++|+.++. +..|++||+.+++....+.. ...+
T Consensus 260 ~~~~~l~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~-~~~~ 334 (741)
T 2ecf_A 260 NVQVKLGVISPAEQAQTQWI---DLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHE-TSPT 334 (741)
T ss_dssp CCEEEEEEECSSTTCCCEEE---CCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEE-ECSS
T ss_pred CCeeEEEEEECCCCCceEEe---cCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEc-CCCC
Confidence 889999887 653211 111258889999999 99999997764 67899999999876654311 0011
Q ss_pred cccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEe--CCCCceEEeccCCCCEEEE-EEcCC
Q 006825 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFA--LSDKPICSFQGHLDDVLDL-SWSKS 578 (630)
Q Consensus 502 h~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwd--lsgk~l~tL~GHs~~V~sL-afSPd 578 (630)
....+..++|+|||++++++..++.+ .+|. ..++ +..+.+|...|..+ .|+|+
T Consensus 335 ~~~~~~~~~~spdg~~~~~~~~~g~~-----------------------~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~d 390 (741)
T 2ecf_A 335 WVPLHNSLRFLDDGSILWSSERTGFQ-----------------------HLYRIDSKGK-AAALTHGNWSVDELLAVDEK 390 (741)
T ss_dssp CCCCCSCCEECTTSCEEEEECTTSSC-----------------------EEEEECSSSC-EEESCCSSSCEEEEEEEETT
T ss_pred cCCcCCceEECCCCeEEEEecCCCcc-----------------------EEEEEcCCCC-eeeeeecceEEEeEeEEeCC
Confidence 11134578999999988888888866 4444 4566 88888898899887 59999
Q ss_pred -CeEE-EEECCC--cEEEEeCCC-CcEEEEEecCCceEEEE-cCCCcEEEEe
Q 006825 579 -QHLL-SSSMDK--TVRLWHLSS-KTCLKIFSHSDYDISLV-DRLMLRFAYG 624 (630)
Q Consensus 579 -~~La-SgS~Dg--tVrIWDl~t-g~~l~t~~H~~~V~sVa-s~~~~~lAsg 624 (630)
++|+ +++.|+ +++||++.. +.++..+.+...+.+++ ++++..++..
T Consensus 391 g~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~~~~~~~~~~spdg~~l~~~ 442 (741)
T 2ecf_A 391 AGLAYFRAGIESARESQIYAVPLQGGQPQRLSKAPGMHSASFARNASVYVDS 442 (741)
T ss_dssp TTEEEEEECSSCTTCBEEEEEETTCCCCEECCCSCSEEEEEECTTSSEEEEE
T ss_pred CCEEEEEEeCCCCceEEEEEEEcCCCCeeecccCCCceEEEECCCCCEEEEE
Confidence 6665 555565 899999875 66667777677788888 8888877765
No 133
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.82 E-value=1.1e-18 Score=198.48 Aligned_cols=271 Identities=10% Similarity=-0.060 Sum_probs=180.9
Q ss_pred eEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCC----------
Q 006825 316 KKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKS---------- 382 (630)
Q Consensus 316 ~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~---------- 382 (630)
..+|++.+|+.. .+....+|...|..++|+| .||.++. ++++ +||+.+|+..+... .+...
T Consensus 93 i~~~d~~~~~~~---~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~-~~~~~~g~~~~~~~-~~~~~~~~~g~~~~v 166 (723)
T 1xfd_A 93 YVLSKIPHGDPQ---SLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIY-YCAHVGKQAIRVVS-TGKEGVIYNGLSDWL 166 (723)
T ss_dssp EEEEESSSCCCE---ECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEE-EESSSSSCCEEEEC-CCBTTTEEEEECCHH
T ss_pred EEEEECCCCceE---eccCCccccccccccEECCCCCEEEEEEC-CeEE-EEECCCCceEEEec-CCCCCceECccccee
Confidence 458899888753 2344557777899999999 6888776 7899 99999998877666 44433
Q ss_pred --------EEEEEEcCCCCeEEeecCCCCCcc-------ccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCccccee
Q 006825 383 --------IRTVASSVTGHKERRSSDERDTSS-------EKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALY 447 (630)
Q Consensus 383 --------V~sVAfSpdG~~lasgS~D~dt~s-------~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~ 447 (630)
+.+++|||||++|+.++.+..... ...+...+..+.+..++.. ..+.+|++||..+++.
T Consensus 167 ~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~--~~~~~l~~~d~~~~~~---- 240 (723)
T 1xfd_A 167 YEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSE--NPSISLHVIGLNGPTH---- 240 (723)
T ss_dssp HHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSC--CCEEEEEEEESSSSCC----
T ss_pred EEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCC--CCeeEEEEEECCCCce----
Confidence 378999999999999876541100 0112223445555544421 3356899999987752
Q ss_pred eeeEecc------cCcCEEEEEEccCCCEEEEEeC----CCcEEEEECcCCceeeeeecccccCcccce----EEEEECC
Q 006825 448 KCQEIQA------HNGSIWSIKFSLDGRYLASAGE----DCVIHVWQVVESERKGELLEKQEDGHLNML----LLANGSP 513 (630)
Q Consensus 448 ~v~tL~g------Ht~~V~sVaFSpDG~~LASgS~----DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V----~svafSp 513 (630)
...+.. |...|..++|+|||++|++.+. +..|++||+.+++....+. ..+...+ ..++|+|
T Consensus 241 -~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~----~~~~~~~~~~~~~~~~sp 315 (723)
T 1xfd_A 241 -DLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHE----DESEAWLHRQNEEPVFSK 315 (723)
T ss_dssp -CEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEE----EECSSCCCCCCCCCEECT
T ss_pred -eEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEE----eccCCEEeccCCCceEcC
Confidence 233444 4778999999999999987753 3689999999887655431 1222332 3789999
Q ss_pred CCCEEEEe--eCCC----eeeeecccccccccccccCccccccEEEe-CCCCc---eEEeccCCCCEEE-EEEcCC-CeE
Q 006825 514 EPTSLSPK--HLDN----HLEKKRRGRSINRKSLSLDHMVVPETVFA-LSDKP---ICSFQGHLDDVLD-LSWSKS-QHL 581 (630)
Q Consensus 514 dg~~lasg--s~Dg----~I~i~~~~~~~~~~s~s~d~~i~~~~Vwd-lsgk~---l~tL~GHs~~V~s-LafSPd-~~L 581 (630)
||+.|+.. ..++ ...+ .+|+ ..+.. +..+..+...+.. ++|+|+ ++|
T Consensus 316 dg~~l~~~~~~~~~~~~~~~~l---------------------~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l 374 (723)
T 1xfd_A 316 DGRKFFFIRAIPQGGRGKFYHI---------------------TVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKI 374 (723)
T ss_dssp TSCSEEEEEEECCSSSSCEEEE---------------------EEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEE
T ss_pred CCCeEEEEEecccCCCcceeEE---------------------EEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEE
Confidence 99977754 3455 2211 5566 34443 5556544455554 699999 888
Q ss_pred EEEECC---CcEEEEeCCCCc--EEEEEe----cCCceEEEE-cCCCcEEEEe
Q 006825 582 LSSSMD---KTVRLWHLSSKT--CLKIFS----HSDYDISLV-DRLMLRFAYG 624 (630)
Q Consensus 582 aSgS~D---gtVrIWDl~tg~--~l~t~~----H~~~V~sVa-s~~~~~lAsg 624 (630)
+..+.+ ++++||++.... ....+. |...|..++ ++++..++..
T Consensus 375 ~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~ 427 (723)
T 1xfd_A 375 YFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLK 427 (723)
T ss_dssp EEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEE
T ss_pred EEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEE
Confidence 766655 899999986532 333343 566778888 8888877764
No 134
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.82 E-value=2e-18 Score=206.69 Aligned_cols=253 Identities=11% Similarity=-0.002 Sum_probs=199.4
Q ss_pred eeeecCccceeEEEeec--ceEeecCCCccEecccCCC-CceeEEecCCccCCEEEEEEcCCCCeEEeecCCC----CC-
Q 006825 333 EMCVGHSPIVQELMRRQ--NVEEGNKDSFDLNNNGSSG-GGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER----DT- 404 (630)
Q Consensus 333 ~~l~GHs~~V~~Lafs~--~laSgS~D~tvr~vWD~~t-G~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~----dt- 404 (630)
..+.+|...|..++|++ .+++++.|++++ +|.+.. +.....+. +|. .+..++|+|||++++.+.+.. +.
T Consensus 197 ~~l~~~~~~v~~~~~s~d~l~~~~~~dg~~~-l~~~~~~g~~~~~l~-~~~-~~~~~~~SpDG~~la~~~~~~i~~~d~~ 273 (1045)
T 1k32_A 197 KKIVDMSTHVSSPVIVGHRIYFITDIDGFGQ-IYSTDLDGKDLRKHT-SFT-DYYPRHLNTDGRRILFSKGGSIYIFNPD 273 (1045)
T ss_dssp EEEECCSSCCEEEEEETTEEEEEECTTSSCE-EEEEETTSCSCEECC-CCC-SSCEEEEEESSSCEEEEETTEEEEECTT
T ss_pred EECcCCCCcccceEEeCCEEEEEEeccCceE-EEEEeCCCCcceEec-CCC-CcceeeEcCCCCEEEEEeCCEEEEecCC
Confidence 56689999999999998 566778889999 998754 55666666 555 466789999999998875432 11
Q ss_pred -c---cccC-----------CcceEEEeecC-CCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCc-CEEEEEEc
Q 006825 405 -S---SEKG-----------GRRSSSATDDS-QDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNG-SIWSIKFS 465 (630)
Q Consensus 405 -~---s~~g-----------h~~~Vsa~~~s-~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~-~V~sVaFS 465 (630)
. .+.+ |...+..+.++ +++ ++.+. ++.|++|+...++ ...+..|.. .+..++|+
T Consensus 274 ~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~------~~~~~~~~~~~~~~~~~s 346 (1045)
T 1k32_A 274 TEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTY------VLKVPEPLRIRYVRRGGD 346 (1045)
T ss_dssp TCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSB------EEECSCCSCEEEEEECSS
T ss_pred ceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCc------eEEccCCCcceEEeeeEc
Confidence 1 1122 23357778888 887 55555 8899999987664 334677888 89999999
Q ss_pred cCCCEEEEEeCCCcEE-EEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccC
Q 006825 466 LDGRYLASAGEDCVIH-VWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLD 544 (630)
Q Consensus 466 pDG~~LASgS~DgtIr-VWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d 544 (630)
||+.|++++.+..|. +|++.+++.. .+ .+|...+..++|+|||++|++++.++.|
T Consensus 347 -dg~~l~~~s~~~~l~~~~d~~~~~~~-~l-----~~~~~~~~~~~~SpDG~~la~~~~~~~v----------------- 402 (1045)
T 1k32_A 347 -TKVAFIHGTREGDFLGIYDYRTGKAE-KF-----EENLGNVFAMGVDRNGKFAVVANDRFEI----------------- 402 (1045)
T ss_dssp -SEEEEEEEETTEEEEEEEETTTCCEE-EC-----CCCCCSEEEEEECTTSSEEEEEETTSEE-----------------
T ss_pred -CCCeEEEEECCCceEEEEECCCCCce-Ee-----cCCccceeeeEECCCCCEEEEECCCCeE-----------------
Confidence 999999999988888 9999876543 32 3677889999999999999999999988
Q ss_pred ccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCC----------cEEEEeCCCCcEEEEEe-cCCceE
Q 006825 545 HMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDK----------TVRLWHLSSKTCLKIFS-HSDYDI 611 (630)
Q Consensus 545 ~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~Dg----------tVrIWDl~tg~~l~t~~-H~~~V~ 611 (630)
.+|++ +++....+.+|...|..++|+|| ++|++++.++ +|++||+.+++ +..+. |...+.
T Consensus 403 ------~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~ 475 (1045)
T 1k32_A 403 ------MTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDY 475 (1045)
T ss_dssp ------EEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEE
T ss_pred ------EEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccC
Confidence 88888 66666667789999999999999 8898887754 99999999988 55555 888899
Q ss_pred EEE-cCCCcEEEEecc
Q 006825 612 SLV-DRLMLRFAYGAF 626 (630)
Q Consensus 612 sVa-s~~~~~lAsgs~ 626 (630)
+++ ++++..+++.+.
T Consensus 476 ~~~~spdG~~l~~~s~ 491 (1045)
T 1k32_A 476 APAFDADSKNLYYLSY 491 (1045)
T ss_dssp EEEECTTSCEEEEEES
T ss_pred CceEcCCCCEEEEEec
Confidence 988 888888877654
No 135
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.81 E-value=5.2e-17 Score=166.55 Aligned_cols=224 Identities=9% Similarity=-0.019 Sum_probs=169.4
Q ss_pred eeEEEeec----ceEeecCCCccEecccCCCCceeEEecCCccC--------CEEEEEEcCCCCeEEeecCCCCCccccC
Q 006825 342 VQELMRRQ----NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFK--------SIRTVASSVTGHKERRSSDERDTSSEKG 409 (630)
Q Consensus 342 V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~--------~V~sVAfSpdG~~lasgS~D~dt~s~~g 409 (630)
+..++|+| .+++...++++. +||..+++.+.++..++.. .+.+++|+|+|+++..+
T Consensus 91 ~~~~~~s~dg~~l~v~~~~~~~v~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~----------- 158 (353)
T 3vgz_A 91 PFGATINNTTQTLWFGNTVNSAVT-AIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYIS----------- 158 (353)
T ss_dssp CCSEEEETTTTEEEEEETTTTEEE-EEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEE-----------
T ss_pred cceEEECCCCCEEEEEecCCCEEE-EEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEE-----------
Confidence 55677777 356667789999 9999999998888743322 27889999999876422
Q ss_pred CcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCc
Q 006825 410 GRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE 489 (630)
Q Consensus 410 h~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~ 489 (630)
....++.|++||..+++ .+..+..+...+..++|+|+|++|+.++.++.|.+||+.+++
T Consensus 159 ----------------~~~~~~~i~~~d~~~~~-----~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~ 217 (353)
T 3vgz_A 159 ----------------GIGKESVIWVVDGGNIK-----LKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNK 217 (353)
T ss_dssp ----------------EESSSCEEEEEETTTTE-----EEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTE
T ss_pred ----------------ecCCCceEEEEcCCCCc-----eEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCe
Confidence 11346789999998764 345566566678999999999999999999999999999988
Q ss_pred eeeeeecccccCcccceEEEEECCCCCEEEEeeC-CCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCC
Q 006825 490 RKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHL-DNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHL 567 (630)
Q Consensus 490 ~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~-Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs 567 (630)
....+... ..++...+..++|+|++++++.+.. ++.| .+|+. +++.+..+..+.
T Consensus 218 ~~~~~~~~-~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v-----------------------~~~d~~~~~~~~~~~~~~ 273 (353)
T 3vgz_A 218 ILSRKKLL-DDGKEHFFINISLDTARQRAFITDSKAAEV-----------------------LVVDTRNGNILAKVAAPE 273 (353)
T ss_dssp EEEEEECC-CSSSCCCEEEEEEETTTTEEEEEESSSSEE-----------------------EEEETTTCCEEEEEECSS
T ss_pred EEEEEEcC-CCCCCcccceEEECCCCCEEEEEeCCCCEE-----------------------EEEECCCCcEEEEEEcCC
Confidence 77665311 2345667888999999997766554 4777 77777 667776666443
Q ss_pred CCEEEEEEcCC-CeE-EEEECCCcEEEEeCCCCcEEEEEecCCceEEEE-cCCCcEEEEe
Q 006825 568 DDVLDLSWSKS-QHL-LSSSMDKTVRLWHLSSKTCLKIFSHSDYDISLV-DRLMLRFAYG 624 (630)
Q Consensus 568 ~~V~sLafSPd-~~L-aSgS~DgtVrIWDl~tg~~l~t~~H~~~V~sVa-s~~~~~lAsg 624 (630)
. ..++|+|+ ++| ++...+++|.+||+.+++.+..+.....+.+++ ++++..+..+
T Consensus 274 ~--~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~ 331 (353)
T 3vgz_A 274 S--LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVS 331 (353)
T ss_dssp C--CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSEEEEEEECTTSCEEEEE
T ss_pred C--ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCCCCeEEEcCCCCEEEEE
Confidence 2 57999999 655 455579999999999999999998666888898 7777755443
No 136
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.79 E-value=2.5e-18 Score=187.28 Aligned_cols=205 Identities=13% Similarity=0.018 Sum_probs=150.5
Q ss_pred ccceeEEEeec---ceEeecCCCccEecccCCCC----------ceeEE----ecCCccCCEEEEEEcCCCCeEEeecCC
Q 006825 339 SPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGG----------GMKSK----KKGSWFKSIRTVASSVTGHKERRSSDE 401 (630)
Q Consensus 339 s~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG----------~~~~~----lk~gH~~~V~sVAfSpdG~~lasgS~D 401 (630)
...+..|++++ .+++++.|+ ++ +|+...- ..+.. ....|...|.+++|+|+|++|+.+
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~--- 110 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQ-IFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSAC--- 110 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EE-EEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEE---
T ss_pred CCCccEEEEecCCCEEEEECCCE-EE-EEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEE---
Confidence 45678889987 688888887 77 7653210 01110 112466779999999998877510
Q ss_pred CCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCC-----cc-cceeeeeEecccCcCEEEEEEccC-CCEEEEE
Q 006825 402 RDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCK-----DL-TALYKCQEIQAHNGSIWSIKFSLD-GRYLASA 474 (630)
Q Consensus 402 ~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~-----el-~~~~~v~tL~gHt~~V~sVaFSpD-G~~LASg 474 (630)
..+++.|++|++||+... +. ..+..+..+.+|...|++|+|+|+ +.+||++
T Consensus 111 ----------------------~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~ 168 (434)
T 2oit_A 111 ----------------------MMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVC 168 (434)
T ss_dssp ----------------------EEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEE
T ss_pred ----------------------EeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEE
Confidence 015678889999997543 11 122335677899999999999997 8999999
Q ss_pred eCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEe
Q 006825 475 GEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFA 554 (630)
Q Consensus 475 S~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwd 554 (630)
+.|++|+|||+.++..... ..+|...|.+++|+|+|++|++++.|++| ++|+
T Consensus 169 s~Dg~v~iwD~~~~~~~~~-----~~~~~~~v~~v~wspdg~~lasgs~dg~v-----------------------~iwd 220 (434)
T 2oit_A 169 LADGSIAVLQVTETVKVCA-----TLPSTVAVTSVCWSPKGKQLAVGKQNGTV-----------------------VQYL 220 (434)
T ss_dssp ETTSCEEEEEESSSEEEEE-----EECGGGCEEEEEECTTSSCEEEEETTSCE-----------------------EEEC
T ss_pred ECCCeEEEEEcCCCcceee-----ccCCCCceeEEEEcCCCCEEEEEcCCCcE-----------------------EEEc
Confidence 9999999999998865444 25688899999999999999999999999 6777
Q ss_pred CCCCceEEeccC-------CCCEEEEEEcCC-CeEE-EEECCCc------EEEEeCCCC
Q 006825 555 LSDKPICSFQGH-------LDDVLDLSWSKS-QHLL-SSSMDKT------VRLWHLSSK 598 (630)
Q Consensus 555 lsgk~l~tL~GH-------s~~V~sLafSPd-~~La-SgS~Dgt------VrIWDl~tg 598 (630)
..++...++..| ...|.+++|+++ .+++ +...||. +++|++...
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 221 PTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp TTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred cCCcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 765555555544 338999999998 5553 3445543 899999864
No 137
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.78 E-value=1.8e-17 Score=188.52 Aligned_cols=254 Identities=9% Similarity=-0.062 Sum_probs=181.4
Q ss_pred cceeEEEeec--ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC------CC-----cc
Q 006825 340 PIVQELMRRQ--NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER------DT-----SS 406 (630)
Q Consensus 340 ~~V~~Lafs~--~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~------dt-----~s 406 (630)
..|..++|+| .++.+ .|++++ +||+.+++.... . .|...+.+++|||||++++.+.+.. ++ +.
T Consensus 82 ~~v~~~~~spd~~~~~~-~~~~i~-~~d~~~~~~~~l-~-~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~ 157 (706)
T 2z3z_A 82 FPSFRTLDAGRGLVVLF-TQGGLV-GFDMLARKVTYL-F-DTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSR 157 (706)
T ss_dssp CCCEEEEETTTTEEEEE-ETTEEE-EEETTTTEEEEE-E-CCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCC
T ss_pred cCceeEEECCCCeEEEE-ECCEEE-EEECCCCceEEc-c-CCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCC
Confidence 4589999999 33333 469999 999998876544 3 4677788999999999999865432 22 22
Q ss_pred ----ccCCcce--------------EEEeecCCCe--EEEec---------------------------------CCcEE
Q 006825 407 ----EKGGRRS--------------SSATDDSQDV--SFHGQ---------------------------------ERVRV 433 (630)
Q Consensus 407 ----~~gh~~~--------------Vsa~~~s~d~--l~Sgs---------------------------------~Dg~V 433 (630)
...+... +.++.+++++ ++.+. .+.+|
T Consensus 158 ~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l 237 (706)
T 2z3z_A 158 AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTV 237 (706)
T ss_dssp CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEE
T ss_pred cEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEE
Confidence 1222221 3677888888 66655 56789
Q ss_pred EEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCC-----cEEEEECcCCceeeeeecccccCcccceEE
Q 006825 434 RQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDC-----VIHVWQVVESERKGELLEKQEDGHLNMLLL 508 (630)
Q Consensus 434 riWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~Dg-----tIrVWDl~tg~~~~~l~~~~~~gh~~~V~s 508 (630)
++||+.+++... +.....|...|..++|+|||++|++++.|+ +|++||+.+++....+...........+..
T Consensus 238 ~~~d~~~~~~~~---~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~ 314 (706)
T 2z3z_A 238 GIYHLATGKTVY---LQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHP 314 (706)
T ss_dssp EEEETTTTEEEE---CCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSC
T ss_pred EEEECCCCceEe---eccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCC
Confidence 999998775321 111236788899999999999999988776 999999998844444321111111123457
Q ss_pred EEECC--CCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC--CCCceEEeccCCCCEEE-EEEcCC-CeEE
Q 006825 509 ANGSP--EPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL--SDKPICSFQGHLDDVLD-LSWSKS-QHLL 582 (630)
Q Consensus 509 vafSp--dg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl--sgk~l~tL~GHs~~V~s-LafSPd-~~La 582 (630)
++|+| +|++++++..++.+ .+|.+ .++.+..+.+|...|.. ++|+|+ ++|+
T Consensus 315 ~~~sp~~dg~~l~~~~~~g~~-----------------------~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~ 371 (706)
T 2z3z_A 315 LTFLPGSNNQFIWQSRRDGWN-----------------------HLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLY 371 (706)
T ss_dssp CEECTTCSSEEEEEECTTSSC-----------------------EEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEE
T ss_pred ceeecCCCCEEEEEEccCCcc-----------------------EEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEE
Confidence 89999 99999988888877 55554 67778888888888887 899999 6666
Q ss_pred EEE-CCC----cEEEEeCCCCcEEEEEecCCceEEEE-cCCCcEEEEe
Q 006825 583 SSS-MDK----TVRLWHLSSKTCLKIFSHSDYDISLV-DRLMLRFAYG 624 (630)
Q Consensus 583 SgS-~Dg----tVrIWDl~tg~~l~t~~H~~~V~sVa-s~~~~~lAsg 624 (630)
.++ .++ .|..||+.+++ +..+.|...+.+++ ++++..+++.
T Consensus 372 ~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~spdg~~l~~~ 418 (706)
T 2z3z_A 372 FESTEASPLERHFYCIDIKGGK-TKDLTPESGMHRTQLSPDGSAIIDI 418 (706)
T ss_dssp EEESSSCTTCBEEEEEETTCCC-CEESCCSSSEEEEEECTTSSEEEEE
T ss_pred EEecCCCCceEEEEEEEcCCCC-ceeccCCCceEEEEECCCCCEEEEE
Confidence 554 444 67777887776 45556788889888 8888877765
No 138
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.78 E-value=9.4e-19 Score=198.99 Aligned_cols=268 Identities=9% Similarity=-0.058 Sum_probs=182.1
Q ss_pred CceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccC---CEEEEEEcCCCCeEEe
Q 006825 324 GRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFK---SIRTVASSVTGHKERR 397 (630)
Q Consensus 324 G~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~---~V~sVAfSpdG~~las 397 (630)
|+.++++++-... ....+..++|+| ++++ +.|++++ +||+.+|+....+. +|.. .|.+++|||||++|+.
T Consensus 2 ~~~~~~~~~~~~~-~~~~~~~~~~spdg~~~~~-~~dg~i~-~~d~~~g~~~~~~~-~~~~~~~~v~~~~~SpDg~~l~~ 77 (723)
T 1xfd_A 2 KKKVTVEDLFSED-FKIHDPEAKWISDTEFIYR-EQKGTVR-LWNVETNTSTVLIE-GKKIESLRAIRYEISPDREYALF 77 (723)
T ss_dssp CCCCCHHHHTCTT-TCCCCCCCCBSSSSCBCCC-CSSSCEE-EBCGGGCCCEEEEC-TTTTTTTTCSEEEECTTSSEEEE
T ss_pred CccccHHHHhCCC-CcccccccEEcCCCcEEEE-eCCCCEE-EEECCCCcEEEEec-cccccccccceEEECCCCCEEEE
Confidence 4556666654332 224477889998 4544 7899999 99999999888877 6765 4999999999999988
Q ss_pred ecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCC
Q 006825 398 SSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED 477 (630)
Q Consensus 398 gS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~D 477 (630)
++.++. ....+.++.|++||+.+++.. .+....+|...|..++|||||++||.++.
T Consensus 78 ~~~~~~--------------------~~~~~~~~~i~~~d~~~~~~~---~l~~~~~~~~~~~~~~~SPdG~~la~~~~- 133 (723)
T 1xfd_A 78 SYNVEP--------------------IYQHSYTGYYVLSKIPHGDPQ---SLDPPEVSNAKLQYAGWGPKGQQLIFIFE- 133 (723)
T ss_dssp EESCCC--------------------CSSSCCCSEEEEEESSSCCCE---ECCCTTCCSCCCSBCCBCSSTTCEEEEET-
T ss_pred EecCcc--------------------ceeecceeeEEEEECCCCceE---eccCCccccccccccEECCCCCEEEEEEC-
Confidence 765531 011234578999999887531 22334566667999999999999999986
Q ss_pred CcEEEEECcCCceeeeeecccccCccc------------------ceEEEEECCCCCEEEEeeCCC-eeeeecccccc--
Q 006825 478 CVIHVWQVVESERKGELLEKQEDGHLN------------------MLLLANGSPEPTSLSPKHLDN-HLEKKRRGRSI-- 536 (630)
Q Consensus 478 gtIrVWDl~tg~~~~~l~~~~~~gh~~------------------~V~svafSpdg~~lasgs~Dg-~I~i~~~~~~~-- 536 (630)
+.|++||+.+++..... ..+.. .+..++|+|||+.|++++.++ .+.+|......
T Consensus 134 ~~i~~~~~~~g~~~~~~-----~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~ 208 (723)
T 1xfd_A 134 NNIYYCAHVGKQAIRVV-----STGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGS 208 (723)
T ss_dssp TEEEEESSSSSCCEEEE-----CCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSS
T ss_pred CeEEEEECCCCceEEEe-----cCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCc
Confidence 79999999988765443 22221 237899999999999887553 34444322100
Q ss_pred -----cccccccCcc---ccccEEEeC-CCCceEEeccC------CCCEEEEEEcCC-CeEEEEEC----CCcEEEEeCC
Q 006825 537 -----NRKSLSLDHM---VVPETVFAL-SDKPICSFQGH------LDDVLDLSWSKS-QHLLSSSM----DKTVRLWHLS 596 (630)
Q Consensus 537 -----~~~s~s~d~~---i~~~~Vwdl-sgk~l~tL~GH------s~~V~sLafSPd-~~LaSgS~----DgtVrIWDl~ 596 (630)
....+..++. .....+|++ +++....+..| ...|..++|+|| ++|++.+. +..|++||+.
T Consensus 209 ~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~ 288 (723)
T 1xfd_A 209 IYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDAT 288 (723)
T ss_dssp SSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETT
T ss_pred CCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCC
Confidence 0001111110 011278888 45555677665 678999999999 67766653 4689999999
Q ss_pred CCcEEEEEe--cCCceE----EEE-cCCCcEEEEe
Q 006825 597 SKTCLKIFS--HSDYDI----SLV-DRLMLRFAYG 624 (630)
Q Consensus 597 tg~~l~t~~--H~~~V~----sVa-s~~~~~lAsg 624 (630)
++++...+. |..+|. .++ +|++..+++.
T Consensus 289 ~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~ 323 (723)
T 1xfd_A 289 TGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFI 323 (723)
T ss_dssp TCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEE
T ss_pred CCcceEEEEeccCCEEeccCCCceEcCCCCeEEEE
Confidence 999887765 455554 566 7777766543
No 139
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.78 E-value=5.5e-18 Score=193.50 Aligned_cols=265 Identities=14% Similarity=-0.028 Sum_probs=193.2
Q ss_pred CceEeeecce-eeecCccceeEEEeec---ceEeecC-CC-----ccEecccCCCCceeEEecCCccC------------
Q 006825 324 GRQLTIEEFE-MCVGHSPIVQELMRRQ---NVEEGNK-DS-----FDLNNNGSSGGGMKSKKKGSWFK------------ 381 (630)
Q Consensus 324 G~~lt~eef~-~l~GHs~~V~~Lafs~---~laSgS~-D~-----tvr~vWD~~tG~~~~~lk~gH~~------------ 381 (630)
++.|+++.+. ...-....|..++|+| .|++++. |+ +++ +||+.+|+....+. .|..
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~-~~d~~~g~~~~~~~-~~~~~~~~~~~~~~~~ 97 (741)
T 2ecf_A 20 AEKLTLEAITGPLPLSGPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLW-SYDIGSGQTRLLVD-SKVVLPGTETLSDEEK 97 (741)
T ss_dssp --CCCHHHHTSSSCTTCCCCEEEEECTTSSEEEEEECCSSCTTEEEEE-EEETTTCCEEEEEC-GGGTC-----------
T ss_pred cccccHHHHhccCCcCCCCCCCceEecCCCEEEEEeccCCCCcccEEE-EEECCCCceeEccc-hhhcccccccccchhh
Confidence 6777777654 2222345689999999 6899888 88 899 99999999877776 4433
Q ss_pred ------------CEEEEEEcCCCCeEEeecCCC------CCc------cccCCcceEEEeecCCCe--EEEecCCcEEEE
Q 006825 382 ------------SIRTVASSVTGHKERRSSDER------DTS------SEKGGRRSSSATDDSQDV--SFHGQERVRVRQ 435 (630)
Q Consensus 382 ------------~V~sVAfSpdG~~lasgS~D~------dt~------s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~Vri 435 (630)
.|.+++|||||++|+.++... +++ .+..|...+..+.+++++ ++.+. +..|++
T Consensus 98 ~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~ 176 (741)
T 2ecf_A 98 ARRERQRIAAMTGIVDYQWSPDAQRLLFPLGGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWV 176 (741)
T ss_dssp ---------CCEESCCCEECTTSSEEEEEETTEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEE
T ss_pred hhhhhhhhccccCcceeEECCCCCEEEEEeCCcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEE
Confidence 378999999999999887532 222 356677789999999999 55554 569999
Q ss_pred EeCCCCcccceeeeeEecccCcC----------------EEEEEEccCCCEEEEEeCCC---------------------
Q 006825 436 YGKSCKDLTALYKCQEIQAHNGS----------------IWSIKFSLDGRYLASAGEDC--------------------- 478 (630)
Q Consensus 436 Wd~~~~el~~~~~v~tL~gHt~~----------------V~sVaFSpDG~~LASgS~Dg--------------------- 478 (630)
|++.+++. .+....+... +..++|||||++|++++.|+
T Consensus 177 ~d~~~g~~-----~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~ 251 (741)
T 2ecf_A 177 IDLASGRQ-----MQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQ 251 (741)
T ss_dssp EETTTTEE-----EECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEE
T ss_pred EecCCCCE-----EEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEe
Confidence 99987643 2222333332 47899999999999998876
Q ss_pred ------------cEEEEECcC-CceeeeeecccccCcccceEEEEECCCCCEEEEeeCC-----Ceeeeecccccccccc
Q 006825 479 ------------VIHVWQVVE-SERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLD-----NHLEKKRRGRSINRKS 540 (630)
Q Consensus 479 ------------tIrVWDl~t-g~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~D-----g~I~i~~~~~~~~~~s 540 (630)
.|++||+.+ ++...... ...|...+..++| |||++|+....+ ..|
T Consensus 252 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i------------- 314 (741)
T 2ecf_A 252 RYPAAGDANVQVKLGVISPAEQAQTQWIDL---GKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDL------------- 314 (741)
T ss_dssp ECCBTTSCCCEEEEEEECSSTTCCCEEECC---CSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEE-------------
T ss_pred ecCCCCCCCCeeEEEEEECCCCCceEEecC---CCCcceEEEEEEe-CCCCEEEEEEecccCCeEEE-------------
Confidence 889999988 76543321 1257788999999 999999876542 233
Q ss_pred cccCccccccEEEeC-CCCceEEeccCCC----CEEEEEEcCC-CeEEEEECCCcEEEEeCC-CCcEEEEEe-cCCceEE
Q 006825 541 LSLDHMVVPETVFAL-SDKPICSFQGHLD----DVLDLSWSKS-QHLLSSSMDKTVRLWHLS-SKTCLKIFS-HSDYDIS 612 (630)
Q Consensus 541 ~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~----~V~sLafSPd-~~LaSgS~DgtVrIWDl~-tg~~l~t~~-H~~~V~s 612 (630)
.+|++ +++....+..|.. .+..++|+|| ++|++++.|++++||.+. .+. +..+. |...|..
T Consensus 315 ----------~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~ 383 (741)
T 2ecf_A 315 ----------VEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDE 383 (741)
T ss_dssp ----------EEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEE
T ss_pred ----------EEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEe
Confidence 77887 5666666665553 4568999999 888899999999998876 455 66776 7778887
Q ss_pred EE--cCCCcEEEEe
Q 006825 613 LV--DRLMLRFAYG 624 (630)
Q Consensus 613 Va--s~~~~~lAsg 624 (630)
+. ++++..+++.
T Consensus 384 ~~~~s~dg~~l~~~ 397 (741)
T 2ecf_A 384 LLAVDEKAGLAYFR 397 (741)
T ss_dssp EEEEETTTTEEEEE
T ss_pred EeEEeCCCCEEEEE
Confidence 63 7887766543
No 140
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.78 E-value=1.6e-17 Score=164.07 Aligned_cols=208 Identities=9% Similarity=-0.034 Sum_probs=156.0
Q ss_pred eEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCC
Q 006825 351 VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQER 430 (630)
Q Consensus 351 laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~D 430 (630)
..+++.|++++ +||+.+++.. .+. .|...|.+++|+|+|++++.++ +
T Consensus 15 ~~~~~~~~~i~-~~d~~~~~~~-~~~-~~~~~v~~~~~spdg~~l~~~~------------------------------~ 61 (297)
T 2ojh_A 15 GPGGSMRSSIE-IFNIRTRKMR-VVW-QTPELFEAPNWSPDGKYLLLNS------------------------------E 61 (297)
T ss_dssp ---CCCCEEEE-EEETTTTEEE-EEE-EESSCCEEEEECTTSSEEEEEE------------------------------T
T ss_pred cCCCCcceeEE-EEeCCCCcee-eec-cCCcceEeeEECCCCCEEEEEc------------------------------C
Confidence 34567899999 9999998866 444 6899999999999999886432 4
Q ss_pred cEEEEEeCCC-CcccceeeeeEeccc-CcCEEEEEEccCCCEEEEEe--CCCcEEEEEC--cCCceeeeeecccccCccc
Q 006825 431 VRVRQYGKSC-KDLTALYKCQEIQAH-NGSIWSIKFSLDGRYLASAG--EDCVIHVWQV--VESERKGELLEKQEDGHLN 504 (630)
Q Consensus 431 g~VriWd~~~-~el~~~~~v~tL~gH-t~~V~sVaFSpDG~~LASgS--~DgtIrVWDl--~tg~~~~~l~~~~~~gh~~ 504 (630)
+.|++|+..+ ++. ...+.+| ...|.+++|+|+|++|++++ .++.++||.+ .++. ...+ ..+ .
T Consensus 62 ~~i~~~d~~~~~~~-----~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~-----~~~-~ 129 (297)
T 2ojh_A 62 GLLYRLSLAGDPSP-----EKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLM-----TKN-L 129 (297)
T ss_dssp TEEEEEESSSCCSC-----EECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEEC-----CSS-S
T ss_pred CeEEEEeCCCCCCc-----eEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEe-----ecC-C
Confidence 5799999987 643 2334455 47889999999999999999 4456666655 4433 2222 222 2
Q ss_pred ceEEEEECCCCCEEE-EeeCCCeeeeecccccccccccccCccccccEEEeC--CCCceEEeccCCCCEEEEEEcCC-Ce
Q 006825 505 MLLLANGSPEPTSLS-PKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL--SDKPICSFQGHLDDVLDLSWSKS-QH 580 (630)
Q Consensus 505 ~V~svafSpdg~~la-sgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl--sgk~l~tL~GHs~~V~sLafSPd-~~ 580 (630)
.+..++|+|++++++ ++..++.+ .+|.+ .+.....+..|...+.+++|+|+ .+
T Consensus 130 ~~~~~~~spdg~~l~~~~~~~~~~-----------------------~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 186 (297)
T 2ojh_A 130 PSYWHGWSPDGKSFTYCGIRDQVF-----------------------DIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRW 186 (297)
T ss_dssp SEEEEEECTTSSEEEEEEEETTEE-----------------------EEEEEETTTCCEEECCCSSSCEEEEEECTTSSE
T ss_pred CccceEECCCCCEEEEEECCCCce-----------------------EEEEEECCCCcceEcccCCCccccceECCCCCE
Confidence 488899999999877 67778877 56653 45566778888899999999999 77
Q ss_pred EEEEE-CCCcEEEEeCC-CCcEEEEEe-cCCceEEEE-cCCCcEEEEecc
Q 006825 581 LLSSS-MDKTVRLWHLS-SKTCLKIFS-HSDYDISLV-DRLMLRFAYGAF 626 (630)
Q Consensus 581 LaSgS-~DgtVrIWDl~-tg~~l~t~~-H~~~V~sVa-s~~~~~lAsgs~ 626 (630)
|+.++ .|+.++||++. .+..+..+. |...+.+++ ++++..+++++.
T Consensus 187 l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 236 (297)
T 2ojh_A 187 IYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSY 236 (297)
T ss_dssp EEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEE
T ss_pred EEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEc
Confidence 77666 59999999986 566667776 888888888 888888877654
No 141
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.76 E-value=8.2e-16 Score=160.10 Aligned_cols=211 Identities=8% Similarity=-0.011 Sum_probs=136.9
Q ss_pred eEeecCCCccEecccCCCCceeEEec-----C--------CccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEe
Q 006825 351 VEEGNKDSFDLNNNGSSGGGMKSKKK-----G--------SWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSAT 417 (630)
Q Consensus 351 laSgS~D~tvr~vWD~~tG~~~~~lk-----~--------gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~ 417 (630)
+++...++++. +|++.+...+..+. . .+...+.+++|+|+|++++
T Consensus 113 ~~~~~~~~~v~-~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~--------------------- 170 (361)
T 3scy_A 113 VTANYSGGSIT-VFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLL--------------------- 170 (361)
T ss_dssp EEEETTTTEEE-EEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEE---------------------
T ss_pred EEEECCCCEEE-EEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEE---------------------
Confidence 44555688899 99987543332111 0 1233457789999988664
Q ss_pred ecCCCeEEEecCCcEEEEEeCCCCc-------ccce-eeeeEecccCcCEEEEEEccCCCEEEEEe-CCCcEEEEECcCC
Q 006825 418 DDSQDVSFHGQERVRVRQYGKSCKD-------LTAL-YKCQEIQAHNGSIWSIKFSLDGRYLASAG-EDCVIHVWQVVES 488 (630)
Q Consensus 418 ~~s~d~l~Sgs~Dg~VriWd~~~~e-------l~~~-~~v~tL~gHt~~V~sVaFSpDG~~LASgS-~DgtIrVWDl~tg 488 (630)
++...+..|++|++.... +... ........+...+..++|+|||++|+.++ .+++|++|++.++
T Consensus 171 -------~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g 243 (361)
T 3scy_A 171 -------ADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADG 243 (361)
T ss_dssp -------EEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETT
T ss_pred -------EEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCC
Confidence 334456789999876432 2110 00112233455678999999999887777 6899999999876
Q ss_pred ceeeeeecccccCcccceEEEEECCCCCEEEEeeCC--CeeeeecccccccccccccCccccccEEEeCC---CC--ceE
Q 006825 489 ERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLD--NHLEKKRRGRSINRKSLSLDHMVVPETVFALS---DK--PIC 561 (630)
Q Consensus 489 ~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~D--g~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdls---gk--~l~ 561 (630)
.............+......++|+|+|++|+++..+ +.| .+|++. ++ .+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i-----------------------~v~~~~~~~g~~~~~~ 300 (361)
T 3scy_A 244 MLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGV-----------------------AIFKVDETNGTLTKVG 300 (361)
T ss_dssp EEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEE-----------------------EEEEECTTTCCEEEEE
T ss_pred ceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEE-----------------------EEEEEcCCCCcEEEee
Confidence 532211111123444556899999999988766554 677 666652 33 344
Q ss_pred EeccCCCCEEEEEEcCC-CeEEEEE-CCCcEEEE--eCCCCcEEEEEe--cCCceEEEE
Q 006825 562 SFQGHLDDVLDLSWSKS-QHLLSSS-MDKTVRLW--HLSSKTCLKIFS--HSDYDISLV 614 (630)
Q Consensus 562 tL~GHs~~V~sLafSPd-~~LaSgS-~DgtVrIW--Dl~tg~~l~t~~--H~~~V~sVa 614 (630)
.+.. ...+..++|+|+ ++|++++ .+++|.+| |..++++..... +...+.||+
T Consensus 301 ~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~ 358 (361)
T 3scy_A 301 YQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLK 358 (361)
T ss_dssp EEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEE
T ss_pred EecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEE
Confidence 4444 456889999999 8788777 67999995 556787766543 556778875
No 142
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.75 E-value=6.8e-16 Score=156.94 Aligned_cols=215 Identities=10% Similarity=0.064 Sum_probs=139.2
Q ss_pred ceeEEEeec---ce-EeecCCCccEecccCC---CCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcce
Q 006825 341 IVQELMRRQ---NV-EEGNKDSFDLNNNGSS---GGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRS 413 (630)
Q Consensus 341 ~V~~Lafs~---~l-aSgS~D~tvr~vWD~~---tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~ 413 (630)
.+..++|+| .| +++..++++. +||+. +++....+. + ...+.+++|+|+|++++.
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~~i~-~~d~~~~~~~~~~~~~~-~-~~~~~~~~~s~dg~~l~~---------------- 145 (343)
T 1ri6_A 85 SLTHISTDHQGQFVFVGSYNAGNVS-VTRLEDGLPVGVVDVVE-G-LDGCHSANISPDNRTLWV---------------- 145 (343)
T ss_dssp CCSEEEECTTSSEEEEEETTTTEEE-EEEEETTEEEEEEEEEC-C-CTTBCCCEECTTSSEEEE----------------
T ss_pred CCcEEEEcCCCCEEEEEecCCCeEE-EEECCCCcccccccccc-C-CCCceEEEECCCCCEEEE----------------
Confidence 567788888 35 4445588899 99994 444455544 3 345888999999986642
Q ss_pred EEEeecCCCeEEEecCCcEEEEEeCCC-Ccccceeeee--Eeccc-CcCEEEEEEccCCCEEEEE-eCCCcEEEEECcC-
Q 006825 414 SSATDDSQDVSFHGQERVRVRQYGKSC-KDLTALYKCQ--EIQAH-NGSIWSIKFSLDGRYLASA-GEDCVIHVWQVVE- 487 (630)
Q Consensus 414 Vsa~~~s~d~l~Sgs~Dg~VriWd~~~-~el~~~~~v~--tL~gH-t~~V~sVaFSpDG~~LASg-S~DgtIrVWDl~t- 487 (630)
+...++.|++|++.. +++. ... .+..+ ...+..++|+|+|++|+.+ ..++.|++|++..
T Consensus 146 ------------~~~~~~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~ 210 (343)
T 1ri6_A 146 ------------PALKQDRICLFTVSDDGHLV---AQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDP 210 (343)
T ss_dssp ------------EEGGGTEEEEEEECTTSCEE---EEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCT
T ss_pred ------------ecCCCCEEEEEEecCCCcee---eecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCC
Confidence 233577899999876 4332 111 23333 3478899999999977555 4899999999953
Q ss_pred -Ccee--eeeecccccCc--ccceEEEEECCCCCEEEE-eeCCCeeeeecccccccccccccCccccccEEEeCC--C--
Q 006825 488 -SERK--GELLEKQEDGH--LNMLLLANGSPEPTSLSP-KHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS--D-- 557 (630)
Q Consensus 488 -g~~~--~~l~~~~~~gh--~~~V~svafSpdg~~las-gs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdls--g-- 557 (630)
+... ..+. ....++ ...+..++|+|++++++. ...++.| .+|++. +
T Consensus 211 ~g~~~~~~~~~-~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i-----------------------~v~d~~~~~~~ 266 (343)
T 1ri6_A 211 HGNIECVQTLD-MMPENFSDTRWAADIHITPDGRHLYACDRTASLI-----------------------TVFSVSEDGSV 266 (343)
T ss_dssp TSCCEEEEEEE-CSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEE-----------------------EEEEECTTSCC
T ss_pred CCcEEEEeecc-ccCccccccCCccceEECCCCCEEEEEecCCCEE-----------------------EEEEEcCCCCc
Confidence 3321 1111 001121 345678999999987774 4467888 666653 2
Q ss_pred -CceEEeccCCCCEEEEEEcCC-CeEEEEE-CCCcEEEE--eCCCCcE--EEEEecCCceEEEE
Q 006825 558 -KPICSFQGHLDDVLDLSWSKS-QHLLSSS-MDKTVRLW--HLSSKTC--LKIFSHSDYDISLV 614 (630)
Q Consensus 558 -k~l~tL~GHs~~V~sLafSPd-~~LaSgS-~DgtVrIW--Dl~tg~~--l~t~~H~~~V~sVa 614 (630)
+.+..+..+.. +..++|+|+ ++|++++ .|+.|+|| |..+++. +..+.......+++
T Consensus 267 ~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g~~p~~i~ 329 (343)
T 1ri6_A 267 LSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWVV 329 (343)
T ss_dssp EEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECSSSCCEEE
T ss_pred eEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccCCCCeeEE
Confidence 23444554544 889999999 7777777 68999999 5556643 44444323344444
No 143
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.75 E-value=1.3e-16 Score=161.88 Aligned_cols=232 Identities=8% Similarity=-0.033 Sum_probs=167.5
Q ss_pred ceEeecCCCccEecccCCCCceeEEecCCccC-CEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEec
Q 006825 350 NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFK-SIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQ 428 (630)
Q Consensus 350 ~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~-~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs 428 (630)
.+++++.+++++ +||..+++.+.++..++.. .+..++|+|+|+++. ++..
T Consensus 3 ~~v~~~~~~~v~-~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~----------------------------v~~~ 53 (337)
T 1pby_B 3 YILAPARPDKLV-VIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAY----------------------------ATVN 53 (337)
T ss_dssp EEEEEETTTEEE-EEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEE----------------------------EEET
T ss_pred EEEEcCCCCeEE-EEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEE----------------------------EEeC
Confidence 478999999999 9999999998888755543 478899999997664 3445
Q ss_pred CCcEEEEEeCCCCcccceeeeeEec-c----cCcCEEEEEEccCCCEEEEEe------------CCCcEEEEECcCCcee
Q 006825 429 ERVRVRQYGKSCKDLTALYKCQEIQ-A----HNGSIWSIKFSLDGRYLASAG------------EDCVIHVWQVVESERK 491 (630)
Q Consensus 429 ~Dg~VriWd~~~~el~~~~~v~tL~-g----Ht~~V~sVaFSpDG~~LASgS------------~DgtIrVWDl~tg~~~ 491 (630)
.++.|++||..+++. +..+. + |...+..++|+|+|++|++++ .++.|.+||+.+++..
T Consensus 54 ~~~~v~~~d~~~~~~-----~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~ 128 (337)
T 1pby_B 54 KSESLVKIDLVTGET-----LGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRR 128 (337)
T ss_dssp TTTEEEEEETTTCCE-----EEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEE
T ss_pred CCCeEEEEECCCCCe-----EeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEE
Confidence 577899999987653 22332 2 233677899999999999886 6899999999988776
Q ss_pred eeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccccccccc-----------ccccCcccc------------
Q 006825 492 GELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRK-----------SLSLDHMVV------------ 548 (630)
Q Consensus 492 ~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~-----------s~s~d~~i~------------ 548 (630)
..+. . ...+..++|+|++++++++ ++.|.+|+........ .++++....
T Consensus 129 ~~~~----~--~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~ 200 (337)
T 1pby_B 129 KAFE----A--PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMAT 200 (337)
T ss_dssp EEEE----C--CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEE
T ss_pred EEEe----C--CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceee
Confidence 6542 1 2346678899999988777 5778888765422211 111221110
Q ss_pred -------------------ccEEEeC-CCCce-EEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEec
Q 006825 549 -------------------PETVFAL-SDKPI-CSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSH 606 (630)
Q Consensus 549 -------------------~~~Vwdl-sgk~l-~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~H 606 (630)
.-.+|++ +++.. ..+..|...+..++|+|+ ++|+++ ++.|++||+.+++.+..+..
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~ 278 (337)
T 1pby_B 201 PFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL 278 (337)
T ss_dssp EEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC
T ss_pred eeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC
Confidence 0146676 44432 334567778899999999 788777 79999999999999998885
Q ss_pred CCceEEEE-cCCCcEEEEec
Q 006825 607 SDYDISLV-DRLMLRFAYGA 625 (630)
Q Consensus 607 ~~~V~sVa-s~~~~~lAsgs 625 (630)
...+.+++ ++++..+++++
T Consensus 279 ~~~~~~~~~s~dg~~l~~~~ 298 (337)
T 1pby_B 279 PHSYYSVNVSTDGSTVWLGG 298 (337)
T ss_dssp SSCCCEEEECTTSCEEEEES
T ss_pred CCceeeEEECCCCCEEEEEc
Confidence 56678888 88887666654
No 144
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.75 E-value=9.2e-16 Score=156.71 Aligned_cols=245 Identities=9% Similarity=-0.039 Sum_probs=165.3
Q ss_pred eeEEEEcCCCceEeeecceeeecCccceeEEEeec---ceE-eecCCCccEecccCCCCce-eEEecCCccCCEEEEEEc
Q 006825 315 WKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVE-EGNKDSFDLNNNGSSGGGM-KSKKKGSWFKSIRTVASS 389 (630)
Q Consensus 315 ~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~la-SgS~D~tvr~vWD~~tG~~-~~~lk~gH~~~V~sVAfS 389 (630)
...+||..+|+.+ ..+..+...+ .++|+| .++ ++..++++. +||..+++. ...+. .+...+.+++|+
T Consensus 21 ~v~~~d~~~~~~~-----~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~-~~d~~~~~~~~~~~~-~~~~~~~~~~~s 92 (331)
T 3u4y_A 21 RISFFSTDTLEIL-----NQITLGYDFV-DTAITSDCSNVVVTSDFCQTLV-QIETQLEPPKVVAIQ-EGQSSMADVDIT 92 (331)
T ss_dssp EEEEEETTTCCEE-----EEEECCCCEE-EEEECSSSCEEEEEESTTCEEE-EEECSSSSCEEEEEE-ECSSCCCCEEEC
T ss_pred eEEEEeCccccee-----eeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEE-EEECCCCceeEEecc-cCCCCccceEEC
Confidence 4668888888887 3434444455 899998 344 444588999 999999998 66666 666666669999
Q ss_pred CCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCC
Q 006825 390 VTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGR 469 (630)
Q Consensus 390 pdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~ 469 (630)
|+|++++.+..+ .....|++||..+++. ++.+..+ ....+++|+|||+
T Consensus 93 ~dg~~l~~~~~~--------------------------~~~~~i~v~d~~~~~~-----~~~~~~~-~~~~~~~~spdg~ 140 (331)
T 3u4y_A 93 PDDQFAVTVTGL--------------------------NHPFNMQSYSFLKNKF-----ISTIPIP-YDAVGIAISPNGN 140 (331)
T ss_dssp TTSSEEEECCCS--------------------------SSSCEEEEEETTTTEE-----EEEEECC-TTEEEEEECTTSS
T ss_pred CCCCEEEEecCC--------------------------CCcccEEEEECCCCCe-----EEEEECC-CCccceEECCCCC
Confidence 999988632111 0122899999987653 4445443 4568999999998
Q ss_pred EEE-EEeCCCc-EEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEE-EeeCCCeeeeecccccccccccccCcc
Q 006825 470 YLA-SAGEDCV-IHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLS-PKHLDNHLEKKRRGRSINRKSLSLDHM 546 (630)
Q Consensus 470 ~LA-SgS~Dgt-IrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~la-sgs~Dg~I~i~~~~~~~~~~s~s~d~~ 546 (630)
+|+ +...++. |++|++.....+.... ............++|+|++++++ ++..++.|
T Consensus 141 ~l~~~~~~~~~~i~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v------------------- 200 (331)
T 3u4y_A 141 GLILIDRSSANTVRRFKIDADGVLFDTG-QEFISGGTRPFNITFTPDGNFAFVANLIGNSI------------------- 200 (331)
T ss_dssp CEEEEEETTTTEEEEEEECTTCCEEEEE-EEEECSSSSEEEEEECTTSSEEEEEETTTTEE-------------------
T ss_pred EEEEEecCCCceEEEEEECCCCcEeecC-CccccCCCCccceEECCCCCEEEEEeCCCCeE-------------------
Confidence 554 5566688 9999987544332211 00112234578999999998554 44467778
Q ss_pred ccccEEEeC-CCCc---eEEeccCCCCEEEEEEcCC-CeEEE-EECCCcEEEEeCCCCcE--EEEEe-c----CCc---e
Q 006825 547 VVPETVFAL-SDKP---ICSFQGHLDDVLDLSWSKS-QHLLS-SSMDKTVRLWHLSSKTC--LKIFS-H----SDY---D 610 (630)
Q Consensus 547 i~~~~Vwdl-sgk~---l~tL~GHs~~V~sLafSPd-~~LaS-gS~DgtVrIWDl~tg~~--l~t~~-H----~~~---V 610 (630)
.+|++ +++. +..+..+ ..+..++|+|+ ++|+. ...++.|.+||+.+++. +..+. + ... +
T Consensus 201 ----~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (331)
T 3u4y_A 201 ----GILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGA 275 (331)
T ss_dssp ----EEEECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTC
T ss_pred ----EEEECCCCcccceeeeccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccc
Confidence 77877 5666 6667644 66789999999 75654 45688999999999987 55554 2 222 2
Q ss_pred EEEE-cCCCcEEEEe
Q 006825 611 ISLV-DRLMLRFAYG 624 (630)
Q Consensus 611 ~sVa-s~~~~~lAsg 624 (630)
..++ ++++..+..+
T Consensus 276 ~~~~~spdg~~l~v~ 290 (331)
T 3u4y_A 276 NQMALNKTETKLFIS 290 (331)
T ss_dssp CCEEECTTSSEEEEE
T ss_pred cceEECCCCCEEEEe
Confidence 3356 7777766443
No 145
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.74 E-value=2e-17 Score=184.42 Aligned_cols=241 Identities=10% Similarity=-0.015 Sum_probs=172.4
Q ss_pred ccceeEEEeec---ceEeecC-CCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecC---CC-------C-
Q 006825 339 SPIVQELMRRQ---NVEEGNK-DSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSD---ER-------D- 403 (630)
Q Consensus 339 s~~V~~Lafs~---~laSgS~-D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~---D~-------d- 403 (630)
...|..++|+| .||.++. |++++ ||++.+|+.. ++..+|...|.+++|||| +.+++++. +. +
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~-lw~~~~g~~~-~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~ 97 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVN-AYLYDGGETV-KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNT 97 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEE-EEEEETTEEE-ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEET
T ss_pred ccchheeecCCCCCeEEEEEccCCcee-EEEEcCCCcE-eeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEec
Confidence 44699999998 7888887 99999 9999666554 455245478999999999 77776654 11 0
Q ss_pred --Ccc---c-cCCcceEEEeecCCCe-EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeC
Q 006825 404 --TSS---E-KGGRRSSSATDDSQDV-SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE 476 (630)
Q Consensus 404 --t~s---~-~gh~~~Vsa~~~s~d~-l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~ 476 (630)
.+. + ..+...+.+..+..+. +++...+..+.+|++.+++. ..+..+.. .+++|+|||++||+++.
T Consensus 98 ~~~g~~~~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~------~~l~~~~~--~~~~~spDG~~la~~~~ 169 (582)
T 3o4h_A 98 SRPGEEQRLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGL------RELARLPG--FGFVSDIRGDLIAGLGF 169 (582)
T ss_dssp TSTTCCEECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEE------EEEEEESS--CEEEEEEETTEEEEEEE
T ss_pred cCCCccccccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcE------EEeecCCC--ceEEECCCCCEEEEEEE
Confidence 111 1 1111223344444433 44444444455999877643 23333433 89999999999999888
Q ss_pred C----CcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCC--eeeeecccccccccccccCcccccc
Q 006825 477 D----CVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN--HLEKKRRGRSINRKSLSLDHMVVPE 550 (630)
Q Consensus 477 D----gtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg--~I~i~~~~~~~~~~s~s~d~~i~~~ 550 (630)
| ++|++||+.+++.. .+ .+|...+..++|+|||+.|+++..++ .|
T Consensus 170 ~~~~~~~i~~~d~~~g~~~-~l-----~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i----------------------- 220 (582)
T 3o4h_A 170 FGGGRVSLFTSNLSSGGLR-VF-----DSGEGSFSSASISPGMKVTAGLETAREARL----------------------- 220 (582)
T ss_dssp EETTEEEEEEEETTTCCCE-EE-----CCSSCEEEEEEECTTSCEEEEEECSSCEEE-----------------------
T ss_pred cCCCCeEEEEEcCCCCCce-Ee-----ecCCCccccceECCCCCEEEEccCCCeeEE-----------------------
Confidence 8 88999999888754 32 67778889999999999999877777 55
Q ss_pred EEEeC-CCCceEEeccCCCCEEEEE--------EcCC-CeEEEEECCCcEEEEeCCCCcEEEEEecCCceEEEE-cCCCc
Q 006825 551 TVFAL-SDKPICSFQGHLDDVLDLS--------WSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYDISLV-DRLML 619 (630)
Q Consensus 551 ~Vwdl-sgk~l~tL~GHs~~V~sLa--------fSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~H~~~V~sVa-s~~~~ 619 (630)
.+|++ +++.. .+.+|...|..++ |+|| .++++++.|++++||++ |+++. .+...|.+++ + ++.
T Consensus 221 ~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~--~~~~~v~~~~~s-dg~ 294 (582)
T 3o4h_A 221 VTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE--APQGNHGRVVLW-RGK 294 (582)
T ss_dssp EEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC--CCSSEEEEEEEE-TTE
T ss_pred EEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec--cCCCceEEEEec-CCE
Confidence 77888 44554 7788888888777 9999 88899999999999999 77665 3446777777 6 666
Q ss_pred EEEEec
Q 006825 620 RFAYGA 625 (630)
Q Consensus 620 ~lAsgs 625 (630)
.+++.+
T Consensus 295 ~l~~~s 300 (582)
T 3o4h_A 295 LVTSHT 300 (582)
T ss_dssp EEEEEE
T ss_pred EEEEEc
Confidence 665544
No 146
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.74 E-value=6.1e-16 Score=156.90 Aligned_cols=253 Identities=11% Similarity=-0.032 Sum_probs=157.3
Q ss_pred eeEEEEcCCCceEeeecceeee-cCcc-ceeEEEeec----ceEeecCCCccEecccCCCCceeEEecCCc----cCCEE
Q 006825 315 WKKVKEVGTGRQLTIEEFEMCV-GHSP-IVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGMKSKKKGSW----FKSIR 384 (630)
Q Consensus 315 ~~~l~dv~TG~~lt~eef~~l~-GHs~-~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~~~~lk~gH----~~~V~ 384 (630)
...+||+.+|+.+ .++. ++.. .+..++|+| .+++++.++.+. +||+.+++.+.++..++ ...+.
T Consensus 12 ~v~~~d~~~~~~~-----~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~-~~d~~~~~~~~~~~~~~~~~~~~~~~ 85 (337)
T 1pby_B 12 KLVVIDTEKMAVD-----KVITIADAGPTPMVPMVAPGGRIAYATVNKSESLV-KIDLVTGETLGRIDLSTPEERVKSLF 85 (337)
T ss_dssp EEEEEETTTTEEE-----EEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEE-EEETTTCCEEEEEECCBTTEEEECTT
T ss_pred eEEEEECCCCcEE-----EEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEE-EEECCCCCeEeeEEcCCccccccccc
Confidence 3668888888877 3333 3322 378899988 356777789999 99999999888776443 23677
Q ss_pred EEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEE
Q 006825 385 TVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKF 464 (630)
Q Consensus 385 sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaF 464 (630)
.++|+|+|++++.+.... ...+.... ..++.|++||..+++. +..+.. ...+.+++|
T Consensus 86 ~~~~s~dg~~l~~~~~~~---------------~~~~~~~~--~~~~~i~v~d~~~~~~-----~~~~~~-~~~~~~~~~ 142 (337)
T 1pby_B 86 GAALSPDGKTLAIYESPV---------------RLELTHFE--VQPTRVALYDAETLSR-----RKAFEA-PRQITMLAW 142 (337)
T ss_dssp CEEECTTSSEEEEEEEEE---------------EECSSCEE--ECCCEEEEEETTTTEE-----EEEEEC-CSSCCCEEE
T ss_pred ceEECCCCCEEEEEeccc---------------cccccccc--ccCceEEEEECCCCcE-----EEEEeC-CCCcceeEE
Confidence 899999998876432100 00000000 0467899999976642 334443 345788999
Q ss_pred ccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCC-C------------------
Q 006825 465 SLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLD-N------------------ 525 (630)
Q Consensus 465 SpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~D-g------------------ 525 (630)
+|||++|+++ ++.|++||+.+++....+... .+... +.|+|++..++..... +
T Consensus 143 s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~---~~~~~---~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (337)
T 1pby_B 143 ARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQ---SWEAE---TYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADP 214 (337)
T ss_dssp CTTSSCEEEE--SSSEEEEETTTTEEEEEECST---TTTTT---TBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSG
T ss_pred CCCCCEEEEe--CCeEEEEECCCCcEeeeeecc---ccCCC---ceeCCCccEEeeeccCCCceeeeeeccccccccccc
Confidence 9999988888 689999999988766554211 00011 1344444433222111 1
Q ss_pred -----eeeeeccccccc-------------ccccccCcccc-----ccEEEeC-CCCceEEeccCCCCEEEEEEcCC-Ce
Q 006825 526 -----HLEKKRRGRSIN-------------RKSLSLDHMVV-----PETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QH 580 (630)
Q Consensus 526 -----~I~i~~~~~~~~-------------~~s~s~d~~i~-----~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~ 580 (630)
.|.+++...... ...++.+.... .-.+|++ +++.+..+..+ ..+.+++|+|+ ++
T Consensus 215 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~ 293 (337)
T 1pby_B 215 TAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGST 293 (337)
T ss_dssp GGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEEESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCE
T ss_pred cccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEeCCeEEEEECCCCcCcceecCC-CceeeEEECCCCCE
Confidence 112222211000 01111221110 0177887 56666666543 46789999999 88
Q ss_pred EEEEECCCcEEEEeCCCCcEEEEEe
Q 006825 581 LLSSSMDKTVRLWHLSSKTCLKIFS 605 (630)
Q Consensus 581 LaSgS~DgtVrIWDl~tg~~l~t~~ 605 (630)
|++++.|+.|++||+.+++.+..+.
T Consensus 294 l~~~~~~~~i~v~d~~~~~~~~~~~ 318 (337)
T 1pby_B 294 VWLGGALGDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp EEEESBSSEEEEEETTTCCEEEEEE
T ss_pred EEEEcCCCcEEEEECcCCcEEEEEE
Confidence 8888999999999999999999887
No 147
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.74 E-value=1.3e-15 Score=154.87 Aligned_cols=249 Identities=11% Similarity=0.009 Sum_probs=162.9
Q ss_pred eEEEEcC-CCceEeeecceeeecCccceeEEEeec---ceEeecCC-CccEecccCC--CCcee--EEecCCccCCEEEE
Q 006825 316 KKVKEVG-TGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKD-SFDLNNNGSS--GGGMK--SKKKGSWFKSIRTV 386 (630)
Q Consensus 316 ~~l~dv~-TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D-~tvr~vWD~~--tG~~~--~~lk~gH~~~V~sV 386 (630)
..+|++. +|+.. . .....|...+..++|+| .|++++.+ ++++ +|++. +|+.. ..+. .+. .+..+
T Consensus 17 v~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~-~~~-~~~~~ 89 (343)
T 1ri6_A 17 IHVWNLNHEGALT---L-TQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVL-AYRIAPDDGALTFAAESA-LPG-SLTHI 89 (343)
T ss_dssp EEEEEECTTSCEE---E-EEEEECSSCCCCEEECTTSSEEEEEETTTTEEE-EEEECTTTCCEEEEEEEE-CSS-CCSEE
T ss_pred EEEEEECCCCcEE---E-eeeEecCCCCceEEECCCCCEEEEeecCCCeEE-EEEecCCCCceeeccccc-cCC-CCcEE
Confidence 4577764 44322 1 12245677889999998 57777776 8999 99987 66533 3444 333 78899
Q ss_pred EEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc
Q 006825 387 ASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL 466 (630)
Q Consensus 387 AfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp 466 (630)
+|+|+|++++ +++..++.|++|++..+. ....++.+..+. .+.+++|+|
T Consensus 90 ~~s~dg~~l~----------------------------~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~-~~~~~~~s~ 138 (343)
T 1ri6_A 90 STDHQGQFVF----------------------------VGSYNAGNVSVTRLEDGL--PVGVVDVVEGLD-GCHSANISP 138 (343)
T ss_dssp EECTTSSEEE----------------------------EEETTTTEEEEEEEETTE--EEEEEEEECCCT-TBCCCEECT
T ss_pred EEcCCCCEEE----------------------------EEecCCCeEEEEECCCCc--cccccccccCCC-CceEEEECC
Confidence 9999998764 333457789999984221 122344555443 589999999
Q ss_pred CCCEEEEEe-CCCcEEEEECcC-CceeeeeecccccCcccceEEEEECCCCCEEEEe-eCCCeeeeeccccccccccccc
Q 006825 467 DGRYLASAG-EDCVIHVWQVVE-SERKGELLEKQEDGHLNMLLLANGSPEPTSLSPK-HLDNHLEKKRRGRSINRKSLSL 543 (630)
Q Consensus 467 DG~~LASgS-~DgtIrVWDl~t-g~~~~~l~~~~~~gh~~~V~svafSpdg~~lasg-s~Dg~I~i~~~~~~~~~~s~s~ 543 (630)
+|++|++++ .|+.|++||+.+ ++................+..++|+|++++++.+ ..++.|
T Consensus 139 dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i---------------- 202 (343)
T 1ri6_A 139 DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSV---------------- 202 (343)
T ss_dssp TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEE----------------
T ss_pred CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEE----------------
Confidence 999888887 899999999987 5432211000012223467789999999976554 477888
Q ss_pred CccccccEEEeCC---CCc--eEEec----cC--CCCEEEEEEcCC-CeEE-EEECCCcEEEEeCC--C--CcEEEEEec
Q 006825 544 DHMVVPETVFALS---DKP--ICSFQ----GH--LDDVLDLSWSKS-QHLL-SSSMDKTVRLWHLS--S--KTCLKIFSH 606 (630)
Q Consensus 544 d~~i~~~~Vwdls---gk~--l~tL~----GH--s~~V~sLafSPd-~~La-SgS~DgtVrIWDl~--t--g~~l~t~~H 606 (630)
.+|++. ++. +..+. +| ...+..++|+|+ ++|+ ++..|+.|++||+. + .+.+..+..
T Consensus 203 -------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~ 275 (343)
T 1ri6_A 203 -------DVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPT 275 (343)
T ss_dssp -------EEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEEC
T ss_pred -------EEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecC
Confidence 444441 111 11111 11 346778999999 6666 55689999999998 3 345556663
Q ss_pred CCceEEEE-cCCCcEEEEec
Q 006825 607 SDYDISLV-DRLMLRFAYGA 625 (630)
Q Consensus 607 ~~~V~sVa-s~~~~~lAsgs 625 (630)
...+.+++ ++++..++++.
T Consensus 276 ~~~~~~~~~s~dg~~l~~~~ 295 (343)
T 1ri6_A 276 ETQPRGFNVDHSGKYLIAAG 295 (343)
T ss_dssp SSSCCCEEECTTSSEEEEEC
T ss_pred CCccceEEECCCCCEEEEec
Confidence 33488888 88887666654
No 148
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.74 E-value=4.5e-16 Score=186.39 Aligned_cols=227 Identities=10% Similarity=0.038 Sum_probs=168.7
Q ss_pred CccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-------C--C---ccccCCcceEEEeecCCCe--
Q 006825 358 SFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-------D--T---SSEKGGRRSSSATDDSQDV-- 423 (630)
Q Consensus 358 ~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-------d--t---~s~~gh~~~Vsa~~~s~d~-- 423 (630)
.+.+ +|....+....++. +|...|.+++|+++ .++.+++.+. + . ..+..|.. +....+++++
T Consensus 183 ~~~~-lw~~~~~~~~~~l~-~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~-~~~~~~SpDG~~ 258 (1045)
T 1k32_A 183 TRGK-IWIEVNSGAFKKIV-DMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTD-YYPRHLNTDGRR 258 (1045)
T ss_dssp TCCE-EEEEEETTEEEEEE-CCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCCS-SCEEEEEESSSC
T ss_pred CcCC-EEEECCCCCeEECc-CCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCCC-cceeeEcCCCCE
Confidence 3445 66543334455565 89999999999988 5555555443 1 1 11333332 3344666666
Q ss_pred EEEecCCcEEEEEeCCCCcccceeeeeEecc-----------cCcCEEEEEEc-cCCCEEEEEeCCCcEEEEECcCCcee
Q 006825 424 SFHGQERVRVRQYGKSCKDLTALYKCQEIQA-----------HNGSIWSIKFS-LDGRYLASAGEDCVIHVWQVVESERK 491 (630)
Q Consensus 424 l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~g-----------Ht~~V~sVaFS-pDG~~LASgS~DgtIrVWDl~tg~~~ 491 (630)
++.+ .++.|++|+.....+ ..+.+ |...|.+++|+ |||++||+++ ++.|++|++.++...
T Consensus 259 la~~-~~~~i~~~d~~~~~l------~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~ 330 (1045)
T 1k32_A 259 ILFS-KGGSIYIFNPDTEKI------EKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL 330 (1045)
T ss_dssp EEEE-ETTEEEEECTTTCCE------EECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE
T ss_pred EEEE-eCCEEEEecCCceEe------eeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE
Confidence 4444 588999999844432 23444 55679999999 9999999988 789999999877644
Q ss_pred eeeecccccCccc-ceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccE-EEeCCCCceEEeccCCCC
Q 006825 492 GELLEKQEDGHLN-MLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPET-VFALSDKPICSFQGHLDD 569 (630)
Q Consensus 492 ~~l~~~~~~gh~~-~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~-Vwdlsgk~l~tL~GHs~~ 569 (630)
. + ..|.. .+..++|+ +|+.++.++.+..+ . +|++.+..+..+.+|...
T Consensus 331 ~-~-----~~~~~~~~~~~~~s-dg~~l~~~s~~~~l-----------------------~~~~d~~~~~~~~l~~~~~~ 380 (1045)
T 1k32_A 331 K-V-----PEPLRIRYVRRGGD-TKVAFIHGTREGDF-----------------------LGIYDYRTGKAEKFEENLGN 380 (1045)
T ss_dssp E-C-----SCCSCEEEEEECSS-SEEEEEEEETTEEE-----------------------EEEEETTTCCEEECCCCCCS
T ss_pred E-c-----cCCCcceEEeeeEc-CCCeEEEEECCCce-----------------------EEEEECCCCCceEecCCccc
Confidence 3 2 45666 78999999 99999988776555 5 778766666667788899
Q ss_pred EEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcEEEEecc
Q 006825 570 VLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLRFAYGAF 626 (630)
Q Consensus 570 V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~lAsgs~ 626 (630)
+..++|+|+ ++|++++.|++|++||+.++++...+. |...|.+++ +|++.++++++.
T Consensus 381 ~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~ 440 (1045)
T 1k32_A 381 VFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFP 440 (1045)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEE
T ss_pred eeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEec
Confidence 999999999 999999999999999999999988885 999999999 999998887754
No 149
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.73 E-value=7.9e-16 Score=157.18 Aligned_cols=211 Identities=7% Similarity=0.004 Sum_probs=156.1
Q ss_pred ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecC
Q 006825 350 NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQE 429 (630)
Q Consensus 350 ~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~ 429 (630)
.+++.+.+++++ +||..+|+.+..+. .+...+ .++|+|+|+++. ++...
T Consensus 12 ~~v~~~~~~~v~-~~d~~~~~~~~~~~-~~~~~~-~~~~s~dg~~l~----------------------------~~~~~ 60 (331)
T 3u4y_A 12 GIVVEQHLRRIS-FFSTDTLEILNQIT-LGYDFV-DTAITSDCSNVV----------------------------VTSDF 60 (331)
T ss_dssp EEEEEGGGTEEE-EEETTTCCEEEEEE-CCCCEE-EEEECSSSCEEE----------------------------EEEST
T ss_pred EEEEecCCCeEE-EEeCcccceeeeEE-ccCCcc-eEEEcCCCCEEE----------------------------EEeCC
Confidence 378889999999 99999999988887 566667 999999998664 33344
Q ss_pred CcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCC---cEEEEECcCCceeeeeecccccCcccce
Q 006825 430 RVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDC---VIHVWQVVESERKGELLEKQEDGHLNML 506 (630)
Q Consensus 430 Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~Dg---tIrVWDl~tg~~~~~l~~~~~~gh~~~V 506 (630)
+++|++||..++++ ....+..+..++.+++|+|+|++|+++..++ .|++||+.+++.+..+. .....
T Consensus 61 ~~~i~~~d~~~~~~----~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~------~~~~~ 130 (331)
T 3u4y_A 61 CQTLVQIETQLEPP----KVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIP------IPYDA 130 (331)
T ss_dssp TCEEEEEECSSSSC----EEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEE------CCTTE
T ss_pred CCeEEEEECCCCce----eEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEE------CCCCc
Confidence 67899999987753 1456677777777799999999999555553 89999999988776642 22345
Q ss_pred EEEEECCCCCEEEE-eeCCCe-eeeecccccccccccccCccccccEEEeCC--CCce---EEeccCCCCEEEEEEcCC-
Q 006825 507 LLANGSPEPTSLSP-KHLDNH-LEKKRRGRSINRKSLSLDHMVVPETVFALS--DKPI---CSFQGHLDDVLDLSWSKS- 578 (630)
Q Consensus 507 ~svafSpdg~~las-gs~Dg~-I~i~~~~~~~~~~s~s~d~~i~~~~Vwdls--gk~l---~tL~GHs~~V~sLafSPd- 578 (630)
..++|+|+|+++++ ...++. | .+|++. +... .....+...+..++|+|+
T Consensus 131 ~~~~~spdg~~l~~~~~~~~~~i-----------------------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg 187 (331)
T 3u4y_A 131 VGIAISPNGNGLILIDRSSANTV-----------------------RRFKIDADGVLFDTGQEFISGGTRPFNITFTPDG 187 (331)
T ss_dssp EEEEECTTSSCEEEEEETTTTEE-----------------------EEEEECTTCCEEEEEEEEECSSSSEEEEEECTTS
T ss_pred cceEECCCCCEEEEEecCCCceE-----------------------EEEEECCCCcEeecCCccccCCCCccceEECCCC
Confidence 89999999985544 455566 7 444442 1111 111233456899999999
Q ss_pred CeE-EEEECCCcEEEEeCCCCcE---EEEEecCCceEEEE-cCCCcEEEEe
Q 006825 579 QHL-LSSSMDKTVRLWHLSSKTC---LKIFSHSDYDISLV-DRLMLRFAYG 624 (630)
Q Consensus 579 ~~L-aSgS~DgtVrIWDl~tg~~---l~t~~H~~~V~sVa-s~~~~~lAsg 624 (630)
++| +++..+++|++||+.+++. +..+.+...+..++ +|++..+...
T Consensus 188 ~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~ 238 (331)
T 3u4y_A 188 NFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVL 238 (331)
T ss_dssp SEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEE
T ss_pred CEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEE
Confidence 655 5555799999999999998 88888667778888 8888865544
No 150
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.73 E-value=1.8e-15 Score=156.36 Aligned_cols=251 Identities=10% Similarity=-0.030 Sum_probs=165.2
Q ss_pred CceeEEEEcCCCceEeeecceeeecCccceeEEEeec--ceEeecC---CCccEecccCCCCce--eEEecCCccCCEEE
Q 006825 313 GTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ--NVEEGNK---DSFDLNNNGSSGGGM--KSKKKGSWFKSIRT 385 (630)
Q Consensus 313 g~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~--~laSgS~---D~tvr~vWD~~tG~~--~~~lk~gH~~~V~s 385 (630)
+.....+|..+|+...+ ...++...+..|+|+| .|+.++. ++.+. +|++.+|+. +..+. .|...+..
T Consensus 17 ~i~v~~~d~~tg~~~~~----~~~~~~~~p~~~a~spdg~l~~~~~~~~~~~v~-~~~~~~g~~~~~~~~~-~~~~~p~~ 90 (347)
T 3hfq_A 17 GIYQGTLDTTAKTLTND----GLLAATQNPTYLALSAKDCLYSVDKEDDEGGIA-AWQIDGQTAHKLNTVV-APGTPPAY 90 (347)
T ss_dssp EEEEEEEETTTTEEEEE----EEEEECSCCCCEEECTTCEEEEEEEETTEEEEE-EEEEETTEEEEEEEEE-EESCCCSE
T ss_pred CEEEEEEcCCCCeEEEe----eeeeccCCcceEEEccCCeEEEEEecCCCceEE-EEEecCCcEEEeeeee-cCCCCCEE
Confidence 34445556667765521 2344556778899998 3444443 68999 999988763 33434 67888899
Q ss_pred EEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCC-CcccceeeeeEecc---------c
Q 006825 386 VASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSC-KDLTALYKCQEIQA---------H 455 (630)
Q Consensus 386 VAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~-~el~~~~~v~tL~g---------H 455 (630)
++|+|||++++.+ ...+++|++|++.. +.+. .+..+.. +
T Consensus 91 ~a~spdg~~l~~~----------------------------~~~~~~v~v~~~~~~g~~~---~~~~~~~~~~~p~~~~~ 139 (347)
T 3hfq_A 91 VAVDEARQLVYSA----------------------------NYHKGTAEVMKIAADGALT---LTDTVQHSGHGPRPEQD 139 (347)
T ss_dssp EEEETTTTEEEEE----------------------------ETTTTEEEEEEECTTSCEE---EEEEEECCCCCSSTTCS
T ss_pred EEECCCCCEEEEE----------------------------eCCCCEEEEEEeCCCCCee---ecceeecCCCCCCcccc
Confidence 9999999877532 23567899999842 2221 2222221 2
Q ss_pred CcCEEEEEEccCCCEEEEEeCCCcEEEEECc-CCceeeeeecccccCcccceEEEEECCCCCEEEE-eeCCCeeeeeccc
Q 006825 456 NGSIWSIKFSLDGRYLASAGEDCVIHVWQVV-ESERKGELLEKQEDGHLNMLLLANGSPEPTSLSP-KHLDNHLEKKRRG 533 (630)
Q Consensus 456 t~~V~sVaFSpDG~~LASgS~DgtIrVWDl~-tg~~~~~l~~~~~~gh~~~V~svafSpdg~~las-gs~Dg~I~i~~~~ 533 (630)
...+.+++|+|||+++++...++.|++|++. ++..... ... ..........++|+|+|++++. ...++.|
T Consensus 140 ~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~-~~~-~~~~g~~p~~~~~spdg~~l~v~~~~~~~v------ 211 (347)
T 3hfq_A 140 GSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQ-SVL-TMEAGFGPRHLVFSPDGQYAFLAGELSSQI------ 211 (347)
T ss_dssp SCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEE-EEE-ECCTTCCEEEEEECTTSSEEEEEETTTTEE------
T ss_pred CCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEe-eeE-EcCCCCCCceEEECCCCCEEEEEeCCCCEE------
Confidence 3358999999999977777788999999998 4432211 100 1112235678999999996555 5566777
Q ss_pred ccccccccccCccccccEEEeCC---CCc--eEEeccCC------CCEEEEEEcCC-CeE-EEEECCCcEEEEeCCC---
Q 006825 534 RSINRKSLSLDHMVVPETVFALS---DKP--ICSFQGHL------DDVLDLSWSKS-QHL-LSSSMDKTVRLWHLSS--- 597 (630)
Q Consensus 534 ~~~~~~s~s~d~~i~~~~Vwdls---gk~--l~tL~GHs------~~V~sLafSPd-~~L-aSgS~DgtVrIWDl~t--- 597 (630)
.+|++. ++. +..+..+. ..+..++|+|+ ++| ++...+++|++|++..
T Consensus 212 -----------------~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~ 274 (347)
T 3hfq_A 212 -----------------ASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGH 274 (347)
T ss_dssp -----------------EEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGC
T ss_pred -----------------EEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCc
Confidence 444442 221 22222222 35889999999 766 6777899999999973
Q ss_pred CcEEEEEe-cCCceEEEE-cCCCcEEEEec
Q 006825 598 KTCLKIFS-HSDYDISLV-DRLMLRFAYGA 625 (630)
Q Consensus 598 g~~l~t~~-H~~~V~sVa-s~~~~~lAsgs 625 (630)
.+.+..+. +...+.+++ +|++.+++++.
T Consensus 275 ~~~~~~~~~~~~~~~~~~~spdg~~l~v~~ 304 (347)
T 3hfq_A 275 LTLIQQISTEGDFPRDFDLDPTEAFVVVVN 304 (347)
T ss_dssp EEEEEEEECSSSCCCEEEECTTSSEEEEEE
T ss_pred EEEeEEEecCCCCcCeEEECCCCCEEEEEE
Confidence 25566666 677788999 88888776654
No 151
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.73 E-value=4.1e-15 Score=153.68 Aligned_cols=212 Identities=14% Similarity=0.039 Sum_probs=138.8
Q ss_pred eecCccceeEEEeec---ceEeec-CCCccEecccCC-CCce--eEEecC-C-------ccCCEEEEEEcCCCCeEEeec
Q 006825 335 CVGHSPIVQELMRRQ---NVEEGN-KDSFDLNNNGSS-GGGM--KSKKKG-S-------WFKSIRTVASSVTGHKERRSS 399 (630)
Q Consensus 335 l~GHs~~V~~Lafs~---~laSgS-~D~tvr~vWD~~-tG~~--~~~lk~-g-------H~~~V~sVAfSpdG~~lasgS 399 (630)
+.+|...+..|+|+| .|++++ .+++++ +|++. +|.. +..+.. + +...+.+++|+|+|+++
T Consensus 81 ~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~-v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~---- 155 (347)
T 3hfq_A 81 VVAPGTPPAYVAVDEARQLVYSANYHKGTAE-VMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLA---- 155 (347)
T ss_dssp EEEESCCCSEEEEETTTTEEEEEETTTTEEE-EEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEE----
T ss_pred eecCCCCCEEEEECCCCCEEEEEeCCCCEEE-EEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEE----
Confidence 344556678889998 466666 778999 99985 3432 222221 1 22358889999998733
Q ss_pred CCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCC-CCcccceeeeeEecccC-cCEEEEEEccCCCEEEE-EeC
Q 006825 400 DERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKS-CKDLTALYKCQEIQAHN-GSIWSIKFSLDGRYLAS-AGE 476 (630)
Q Consensus 400 ~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~-~~el~~~~~v~tL~gHt-~~V~sVaFSpDG~~LAS-gS~ 476 (630)
++...++.|++|++. .+++. .+..+..+. ..+..++|+|||++|+. ...
T Consensus 156 -------------------------v~~~~~~~v~~~~~~~~g~~~---~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~ 207 (347)
T 3hfq_A 156 -------------------------VIDLGSDKVYVYNVSDAGQLS---EQSVLTMEAGFGPRHLVFSPDGQYAFLAGEL 207 (347)
T ss_dssp -------------------------EEETTTTEEEEEEECTTSCEE---EEEEEECCTTCCEEEEEECTTSSEEEEEETT
T ss_pred -------------------------EEeCCCCEEEEEEECCCCcEE---EeeeEEcCCCCCCceEEECCCCCEEEEEeCC
Confidence 344456789999987 34322 222333333 36788999999996555 567
Q ss_pred CCcEEEEECcC--Ccee--eeeeccc-ccCcccceEEEEECCCCCEE-EEeeCCCeeeeecccccccccccccCcccccc
Q 006825 477 DCVIHVWQVVE--SERK--GELLEKQ-EDGHLNMLLLANGSPEPTSL-SPKHLDNHLEKKRRGRSINRKSLSLDHMVVPE 550 (630)
Q Consensus 477 DgtIrVWDl~t--g~~~--~~l~~~~-~~gh~~~V~svafSpdg~~l-asgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~ 550 (630)
++.|++|++.. ++.. ..+.... .......+..++|+|+|++| ++...++.|
T Consensus 208 ~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v----------------------- 264 (347)
T 3hfq_A 208 SSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTL----------------------- 264 (347)
T ss_dssp TTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEE-----------------------
T ss_pred CCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEE-----------------------
Confidence 89999999874 4321 1111000 00011457889999999977 455567888
Q ss_pred EEEeCC--C--CceEEeccCCCCEEEEEEcCC-CeEEEEEC-CCcEEEE--eCCCCcEEE
Q 006825 551 TVFALS--D--KPICSFQGHLDDVLDLSWSKS-QHLLSSSM-DKTVRLW--HLSSKTCLK 602 (630)
Q Consensus 551 ~Vwdls--g--k~l~tL~GHs~~V~sLafSPd-~~LaSgS~-DgtVrIW--Dl~tg~~l~ 602 (630)
.+|++. + +.+..+..|...+..++|+|+ ++|++++. +++|.|| |..+|+...
T Consensus 265 ~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 265 AVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSL 324 (347)
T ss_dssp EEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred EEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence 566652 2 345566667777899999999 78887776 4999999 666777654
No 152
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.72 E-value=8.3e-17 Score=175.26 Aligned_cols=143 Identities=15% Similarity=0.128 Sum_probs=116.8
Q ss_pred ccCcCEEEEEEccCCCEEE----EEeCCCcEEEEECcCC--------ceeeeeecccccCcccceEEEEECCC-CCEEEE
Q 006825 454 AHNGSIWSIKFSLDGRYLA----SAGEDCVIHVWQVVES--------ERKGELLEKQEDGHLNMLLLANGSPE-PTSLSP 520 (630)
Q Consensus 454 gHt~~V~sVaFSpDG~~LA----SgS~DgtIrVWDl~tg--------~~~~~l~~~~~~gh~~~V~svafSpd-g~~las 520 (630)
.|...|++++|+|+|++|| +|+.|++|+|||+.++ +.+..+ ..+.+|...|.+++|+|+ +.+|++
T Consensus 90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~--~~~~~h~~~V~~v~~~p~~~~~las 167 (434)
T 2oit_A 90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYH--KLLKDAGGMVIDMKWNPTVPSMVAV 167 (434)
T ss_dssp CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEE--ECCCSGGGSEEEEEECSSCTTEEEE
T ss_pred cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeee--eccCCCCCceEEEEECCCCCCEEEE
Confidence 4677899999999999999 8999999999999765 111111 224789999999999998 899999
Q ss_pred eeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCC
Q 006825 521 KHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK 598 (630)
Q Consensus 521 gs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg 598 (630)
++.|++| ++|++ ++..+....+|...|++++|+|+ ++|++|+.|++|+|||++ +
T Consensus 168 ~s~Dg~v-----------------------~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~ 223 (434)
T 2oit_A 168 CLADGSI-----------------------AVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-L 223 (434)
T ss_dssp EETTSCE-----------------------EEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-C
T ss_pred EECCCeE-----------------------EEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-C
Confidence 9999999 77877 45566667789999999999999 999999999999999998 7
Q ss_pred cEEEEEe-cC-------CceEEEE-cCCCcEEE
Q 006825 599 TCLKIFS-HS-------DYDISLV-DRLMLRFA 622 (630)
Q Consensus 599 ~~l~t~~-H~-------~~V~sVa-s~~~~~lA 622 (630)
+...++. |. ..|.+++ .+...+++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~ 256 (434)
T 2oit_A 224 QEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAI 256 (434)
T ss_dssp CEEEEECCCTTCCTTSCEEEEEEEEEETTEEEE
T ss_pred cccccccCCcccCCCCceeEEEEEEecCceEEE
Confidence 7777665 32 2788888 65555553
No 153
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.71 E-value=2.6e-16 Score=175.48 Aligned_cols=177 Identities=11% Similarity=-0.026 Sum_probs=132.8
Q ss_pred ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecC
Q 006825 350 NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQE 429 (630)
Q Consensus 350 ~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~ 429 (630)
.+++++.|. +. +||+.+|+...... ++. .+++|||||++++.++.+. ..
T Consensus 125 ~~~s~~~~~-~~-l~d~~~g~~~~l~~-~~~---~~~~~spDG~~la~~~~~~-------------------------~~ 173 (582)
T 3o4h_A 125 VFTGATEDR-VA-LYALDGGGLRELAR-LPG---FGFVSDIRGDLIAGLGFFG-------------------------GG 173 (582)
T ss_dssp EEEEECSSC-EE-EEEEETTEEEEEEE-ESS---CEEEEEEETTEEEEEEEEE-------------------------TT
T ss_pred EEEecCCCC-ce-EEEccCCcEEEeec-CCC---ceEEECCCCCEEEEEEEcC-------------------------CC
Confidence 355555554 44 89998887665554 333 7889999999887654331 12
Q ss_pred CcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCC--cEEEEECcCCceeeeeecccccCcccceE
Q 006825 430 RVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDC--VIHVWQVVESERKGELLEKQEDGHLNMLL 507 (630)
Q Consensus 430 Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~Dg--tIrVWDl~tg~~~~~l~~~~~~gh~~~V~ 507 (630)
...|++||+.+++. ..|.+|.+.+..++|+|||++|+++..|+ +|++||+.+++.. . ..+|...+.
T Consensus 174 ~~~i~~~d~~~g~~------~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~-----~~~~~~~~~ 241 (582)
T 3o4h_A 174 RVSLFTSNLSSGGL------RVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-D-----LELPSKDFS 241 (582)
T ss_dssp EEEEEEEETTTCCC------EEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-E-----CCCSCSHHH
T ss_pred CeEEEEEcCCCCCc------eEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-E-----ccCCCcChh
Confidence 25699999887753 46788999999999999999999988999 8999999988766 3 256655555
Q ss_pred EEE--------ECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-
Q 006825 508 LAN--------GSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS- 578 (630)
Q Consensus 508 sva--------fSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd- 578 (630)
.++ |+|||.+++++..++.+ ++|.+ |+.+. .+...|.+++|+ +
T Consensus 242 ~~~~~~~~~~~~spdg~~~~~~~~~g~~-----------------------~l~~~-g~~~~---~~~~~v~~~~~s-dg 293 (582)
T 3o4h_A 242 SYRPTAITWLGYLPDGRLAVVARREGRS-----------------------AVFID-GERVE---APQGNHGRVVLW-RG 293 (582)
T ss_dssp HHCCSEEEEEEECTTSCEEEEEEETTEE-----------------------EEEET-TEEEC---CCSSEEEEEEEE-TT
T ss_pred hhhhccccceeEcCCCcEEEEEEcCCcE-----------------------EEEEE-CCeec---cCCCceEEEEec-CC
Confidence 556 99999999999999988 77777 65544 344678999999 8
Q ss_pred CeEEEEECCCc---EEEEeCCC
Q 006825 579 QHLLSSSMDKT---VRLWHLSS 597 (630)
Q Consensus 579 ~~LaSgS~Dgt---VrIWDl~t 597 (630)
+++++++.+.+ |.+||...
T Consensus 294 ~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 294 KLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp EEEEEEEETTEEEEEEEETTCC
T ss_pred EEEEEEcCCCCCCeEEEEcCCC
Confidence 78888887754 67777653
No 154
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.71 E-value=1.6e-15 Score=154.89 Aligned_cols=235 Identities=14% Similarity=0.066 Sum_probs=155.6
Q ss_pred eEEEEcCCCceEeeecceeeecCc-cceeEEEeec----ceEeecCCCccEecccCCCCceeEEecCCc-----cCCEEE
Q 006825 316 KKVKEVGTGRQLTIEEFEMCVGHS-PIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGMKSKKKGSW-----FKSIRT 385 (630)
Q Consensus 316 ~~l~dv~TG~~lt~eef~~l~GHs-~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~~~~lk~gH-----~~~V~s 385 (630)
..+||+.+|+.+ .++..+. ..+..++|+| .++++..++++. +||+.+++.+..+..++ ...+..
T Consensus 23 v~~~d~~~~~~~-----~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~-~~d~~t~~~~~~~~~~~~~~~~~~~~~~ 96 (349)
T 1jmx_B 23 LHVVDVASDTVY-----KSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIY-GIDLDTCKNTFHANLSSVPGEVGRSMYS 96 (349)
T ss_dssp EEEEETTTTEEE-----EEEECSSCCSSCEEEECTTSSEEEEEETTTTEEE-EEETTTTEEEEEEESCCSTTEEEECSSC
T ss_pred EEEEECCCCcEE-----EEEecCCCCCCceeEECCCCCEEEEEeCCCCcEE-EEeCCCCcEEEEEEcccccccccccccc
Confidence 456676676665 3333222 2466788887 345667889999 99999999888776444 344778
Q ss_pred EEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEc
Q 006825 386 VASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFS 465 (630)
Q Consensus 386 VAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFS 465 (630)
++|+|+|++++.++.+. ....+. + +..++.|++||+.+++... .+..+..+ ..+.+++|+
T Consensus 97 ~~~spdg~~l~~~~~~~---------------~~~~~~-~-~~~~~~i~~~d~~~~~~~~--~~~~~~~~-~~~~~~~~s 156 (349)
T 1jmx_B 97 FAISPDGKEVYATVNPT---------------QRLNDH-Y-VVKPPRLEVFSTADGLEAK--PVRTFPMP-RQVYLMRAA 156 (349)
T ss_dssp EEECTTSSEEEEEEEEE---------------EECSSC-E-EECCCEEEEEEGGGGGGBC--CSEEEECC-SSCCCEEEC
T ss_pred eEECCCCCEEEEEcccc---------------cccccc-c-ccCCCeEEEEECCCccccc--eeeeccCC-CcccceeEC
Confidence 99999999887654220 000000 0 1124689999987654321 23334433 468899999
Q ss_pred cCCCEEEEEeCCCcEEEEECcCCceeeeeecccccC--------------------------------------------
Q 006825 466 LDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG-------------------------------------------- 501 (630)
Q Consensus 466 pDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~g-------------------------------------------- 501 (630)
|||+ |+.++. .|++||+.+++....+.......
T Consensus 157 ~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 233 (349)
T 1jmx_B 157 DDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLY 233 (349)
T ss_dssp TTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEE
T ss_pred CCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccce
Confidence 9999 555554 49999999888766542110000
Q ss_pred -------------------cccceEEEEECC-CCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCce
Q 006825 502 -------------------HLNMLLLANGSP-EPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPI 560 (630)
Q Consensus 502 -------------------h~~~V~svafSp-dg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l 560 (630)
+...+..++++| ++++++++ ++.| .+|++ +++.+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v-----------------------~~~d~~~~~~~ 288 (349)
T 1jmx_B 234 GYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRL-----------------------AKYDLKQRKLI 288 (349)
T ss_dssp EEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEE-----------------------EEEETTTTEEE
T ss_pred eEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeE-----------------------EEEECccCeEE
Confidence 001234556667 77766666 5555 78887 56666
Q ss_pred EEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825 561 CSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS 605 (630)
Q Consensus 561 ~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~ 605 (630)
..+..+ ..+.+++|+|+ ++|++++.++.|++||+.+++.+..+.
T Consensus 289 ~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 289 KAANLD-HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp EEEECS-SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred EEEcCC-CCccceEECCCCCEEEEecCCCeEEEEeccccceeeeee
Confidence 666533 45789999999 788888889999999999999999887
No 155
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.70 E-value=2.4e-15 Score=170.92 Aligned_cols=251 Identities=7% Similarity=-0.031 Sum_probs=170.8
Q ss_pred eEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCC-----CceeEEecCCccCC-----
Q 006825 316 KKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSG-----GGMKSKKKGSWFKS----- 382 (630)
Q Consensus 316 ~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~t-----G~~~~~lk~gH~~~----- 382 (630)
.++|++.+|+.. .+..|...|..++|+| .|+. +.|++++ +||+.+ |+...... .+...
T Consensus 103 i~~~d~~~~~~~------~l~~~~~~~~~~~~SpdG~~la~-~~~~~i~-v~~~~~~~~~~g~~~~~~~-~~~~~~~~g~ 173 (706)
T 2z3z_A 103 LVGFDMLARKVT------YLFDTNEETASLDFSPVGDRVAY-VRNHNLY-IARGGKLGEGMSRAIAVTI-DGTETLVYGQ 173 (706)
T ss_dssp EEEEETTTTEEE------EEECCTTCCTTCEECTTSSEEEE-EETTEEE-EEECBCTTSCCCCCEESCS-CCBTTEEESS
T ss_pred EEEEECCCCceE------EccCCcccccCCcCCCCCCEEEE-EECCeEE-EEecCcccccCCCcEEecc-CCCCCeEccc
Confidence 345666665443 3344556678889998 5666 4789999 999999 87776555 34443
Q ss_pred ---------EEEEEEcCCCCeEEeecCC---------------------------------C-------CCcc------c
Q 006825 383 ---------IRTVASSVTGHKERRSSDE---------------------------------R-------DTSS------E 407 (630)
Q Consensus 383 ---------V~sVAfSpdG~~lasgS~D---------------------------------~-------dt~s------~ 407 (630)
+.+++|||||++|+.++.| . +++. .
T Consensus 174 ~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~ 253 (706)
T 2z3z_A 174 AVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTG 253 (706)
T ss_dssp CCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCC
T ss_pred chhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccC
Confidence 4889999999999988722 1 1111 1
Q ss_pred cCCcceEEEeecCCCe--EEEecCC-----cEEEEEeCCCC-cccceeeeeEecccCc---CEEEEEEcc--CCCEEEEE
Q 006825 408 KGGRRSSSATDDSQDV--SFHGQER-----VRVRQYGKSCK-DLTALYKCQEIQAHNG---SIWSIKFSL--DGRYLASA 474 (630)
Q Consensus 408 ~gh~~~Vsa~~~s~d~--l~Sgs~D-----g~VriWd~~~~-el~~~~~v~tL~gHt~---~V~sVaFSp--DG~~LASg 474 (630)
..|...+..+.+++++ ++.+..+ .+|++||..++ .... +.. ..+.. .+..++|+| ||++|+++
T Consensus 254 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~---~~~-~~~~~~~~~~~~~~~sp~~dg~~l~~~ 329 (706)
T 2z3z_A 254 EPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRT---LFV-ETDKHYVEPLHPLTFLPGSNNQFIWQS 329 (706)
T ss_dssp SCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEE---EEE-EECSSCCCCCSCCEECTTCSSEEEEEE
T ss_pred CCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeE---EEE-ccCCCeECccCCceeecCCCCEEEEEE
Confidence 2466778899999998 6665544 49999999876 3211 111 12222 346789999 99999999
Q ss_pred eCCCcEEEEECc-CCceeeeeecccccCcccceEE-EEECCCCCEEEEeeCCCe---eeeecccccccccccccCccccc
Q 006825 475 GEDCVIHVWQVV-ESERKGELLEKQEDGHLNMLLL-ANGSPEPTSLSPKHLDNH---LEKKRRGRSINRKSLSLDHMVVP 549 (630)
Q Consensus 475 S~DgtIrVWDl~-tg~~~~~l~~~~~~gh~~~V~s-vafSpdg~~lasgs~Dg~---I~i~~~~~~~~~~s~s~d~~i~~ 549 (630)
+.|+.++||.+. ++..+..+ ..+...+.. ++|+|+++.|+.++.+.. +.+
T Consensus 330 ~~~g~~~l~~~~~~~~~~~~l-----~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l-------------------- 384 (706)
T 2z3z_A 330 RRDGWNHLYLYDTTGRLIRQV-----TKGEWEVTNFAGFDPKGTRLYFESTEASPLERHF-------------------- 384 (706)
T ss_dssp CTTSSCEEEEEETTSCEEEEC-----CCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEE--------------------
T ss_pred ccCCccEEEEEECCCCEEEec-----CCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEE--------------------
Confidence 999999999986 55555554 456666765 799999988776654431 211
Q ss_pred cEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECC----CcEEEEeCCCCcEEEEEecC
Q 006825 550 ETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMD----KTVRLWHLSSKTCLKIFSHS 607 (630)
Q Consensus 550 ~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~D----gtVrIWDl~tg~~l~t~~H~ 607 (630)
..|++.+..+..+. |...+..++|+|+ ++|+..+.+ +.|++||+.+++ +..+.+.
T Consensus 385 -~~~d~~~~~~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~-~~~~~~~ 444 (706)
T 2z3z_A 385 -YCIDIKGGKTKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS-HTLLEAK 444 (706)
T ss_dssp -EEEETTCCCCEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE-EEEEECC
T ss_pred -EEEEcCCCCceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe-Eeecccc
Confidence 44555443344444 7778999999999 777765443 569999999887 4444443
No 156
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.70 E-value=1.4e-15 Score=155.41 Aligned_cols=234 Identities=8% Similarity=-0.044 Sum_probs=156.5
Q ss_pred ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecC
Q 006825 350 NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQE 429 (630)
Q Consensus 350 ~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~ 429 (630)
.+++++.++++. +||..+++.+.++..+....+..++|+|+|+++. ++...
T Consensus 13 ~~v~~~~~~~v~-~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~----------------------------v~~~~ 63 (349)
T 1jmx_B 13 YMIVTNYPNNLH-VVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAY----------------------------VLNNH 63 (349)
T ss_dssp EEEEEETTTEEE-EEETTTTEEEEEEECSSCCSSCEEEECTTSSEEE----------------------------EEETT
T ss_pred EEEEeCCCCeEE-EEECCCCcEEEEEecCCCCCCceeEECCCCCEEE----------------------------EEeCC
Confidence 478899999999 9999999998888744433577899999998653 33455
Q ss_pred CcEEEEEeCCCCcccceeeeeEec-cc-----CcCEEEEEEccCCCEEEEEeCC------------CcEEEEECcCCcee
Q 006825 430 RVRVRQYGKSCKDLTALYKCQEIQ-AH-----NGSIWSIKFSLDGRYLASAGED------------CVIHVWQVVESERK 491 (630)
Q Consensus 430 Dg~VriWd~~~~el~~~~~v~tL~-gH-----t~~V~sVaFSpDG~~LASgS~D------------gtIrVWDl~tg~~~ 491 (630)
++.|++||..+++. +..+. ++ ...+..++|+|||++|++++.+ +.|.+||+.+++..
T Consensus 64 ~~~i~~~d~~t~~~-----~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 138 (349)
T 1jmx_B 64 YGDIYGIDLDTCKN-----TFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA 138 (349)
T ss_dssp TTEEEEEETTTTEE-----EEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB
T ss_pred CCcEEEEeCCCCcE-----EEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccc
Confidence 77899999987643 33333 22 2347899999999999999866 89999999886543
Q ss_pred eeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCc----------------------cc-c
Q 006825 492 GELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDH----------------------MV-V 548 (630)
Q Consensus 492 ~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~----------------------~i-~ 548 (630)
..+.. ..+...+.+++|+|++++ +.++. .|.+|+.........+.... .+ .
T Consensus 139 ~~~~~---~~~~~~~~~~~~s~dg~l-~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (349)
T 1jmx_B 139 KPVRT---FPMPRQVYLMRAADDGSL-YVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSM 212 (349)
T ss_dssp CCSEE---EECCSSCCCEEECTTSCE-EEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEE
T ss_pred ceeee---ccCCCcccceeECCCCcE-EEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEe
Confidence 32210 122235778899999994 44433 37777765432222211110 00 0
Q ss_pred c---------------------cEEEeCCCCc--eEEeccCCCCEEEEEEcC-C-CeEEEEECCCcEEEEeCCCCcEEEE
Q 006825 549 P---------------------ETVFALSDKP--ICSFQGHLDDVLDLSWSK-S-QHLLSSSMDKTVRLWHLSSKTCLKI 603 (630)
Q Consensus 549 ~---------------------~~Vwdlsgk~--l~tL~GHs~~V~sLafSP-d-~~LaSgS~DgtVrIWDl~tg~~l~t 603 (630)
+ ...++..... +..+..+...+..++|+| + ++|+++ ++.|++||+.+++.+..
T Consensus 213 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~ 290 (349)
T 1jmx_B 213 LYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKA 290 (349)
T ss_dssp EEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEE
T ss_pred eeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEE
Confidence 0 0012221111 122334556788999999 8 777777 89999999999999998
Q ss_pred EecCCceEEEE-cCCCcEEEEec
Q 006825 604 FSHSDYDISLV-DRLMLRFAYGA 625 (630)
Q Consensus 604 ~~H~~~V~sVa-s~~~~~lAsgs 625 (630)
+.....+.+++ ++++..+++++
T Consensus 291 ~~~~~~~~~~~~s~dg~~l~~~~ 313 (349)
T 1jmx_B 291 ANLDHTYYCVAFDKKGDKLYLGG 313 (349)
T ss_dssp EECSSCCCEEEECSSSSCEEEES
T ss_pred EcCCCCccceEECCCCCEEEEec
Confidence 88555677888 77766555543
No 157
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.68 E-value=1.6e-14 Score=147.95 Aligned_cols=217 Identities=10% Similarity=-0.002 Sum_probs=160.1
Q ss_pred cceeEEEeec---ceEeecC-------CCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccC
Q 006825 340 PIVQELMRRQ---NVEEGNK-------DSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKG 409 (630)
Q Consensus 340 ~~V~~Lafs~---~laSgS~-------D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~g 409 (630)
..+..++|+| .++.++. ++++. +||..+++.+.++.. ...+..++|+|+|+++.
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~-~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~------------- 104 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVY-RLDPVTLEVTQAIHN--DLKPFGATINNTTQTLW------------- 104 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEE-EECTTTCCEEEEEEE--SSCCCSEEEETTTTEEE-------------
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEE-EEcCCCCeEEEEEec--CCCcceEEECCCCCEEE-------------
Confidence 4567888888 4444442 56899 999999998888763 34477899999998654
Q ss_pred CcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcC---------EEEEEEccCCCEEEEEe--CCC
Q 006825 410 GRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGS---------IWSIKFSLDGRYLASAG--EDC 478 (630)
Q Consensus 410 h~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~---------V~sVaFSpDG~~LASgS--~Dg 478 (630)
++...++.|++||..+++. +..+..+... +.+++|+|+|++|+.++ .++
T Consensus 105 ---------------v~~~~~~~v~~~d~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~ 164 (353)
T 3vgz_A 105 ---------------FGNTVNSAVTAIDAKTGEV-----KGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKES 164 (353)
T ss_dssp ---------------EEETTTTEEEEEETTTCCE-----EEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSC
T ss_pred ---------------EEecCCCEEEEEeCCCCee-----EEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCc
Confidence 3445567899999987753 3445444322 78999999999877776 588
Q ss_pred cEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CC
Q 006825 479 VIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SD 557 (630)
Q Consensus 479 tIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sg 557 (630)
.|.+||+.+++.+..+ ..+...+..++|+|++++++.+..++.| .+|+. ++
T Consensus 165 ~i~~~d~~~~~~~~~~-----~~~~~~~~~~~~s~dg~~l~~~~~~~~i-----------------------~~~d~~~~ 216 (353)
T 3vgz_A 165 VIWVVDGGNIKLKTAI-----QNTGKMSTGLALDSEGKRLYTTNADGEL-----------------------ITIDTADN 216 (353)
T ss_dssp EEEEEETTTTEEEEEE-----CCCCTTCCCCEEETTTTEEEEECTTSEE-----------------------EEEETTTT
T ss_pred eEEEEcCCCCceEEEe-----cCCCCccceEEECCCCCEEEEEcCCCeE-----------------------EEEECCCC
Confidence 9999999998877664 3334456788999999999998888888 66776 55
Q ss_pred CceEEec----cCCCCEEEEEEcCC-CeEEEEE-CCCcEEEEeCCCCcEEEEEecCCceEEEE-cCCCcEE
Q 006825 558 KPICSFQ----GHLDDVLDLSWSKS-QHLLSSS-MDKTVRLWHLSSKTCLKIFSHSDYDISLV-DRLMLRF 621 (630)
Q Consensus 558 k~l~tL~----GHs~~V~sLafSPd-~~LaSgS-~DgtVrIWDl~tg~~l~t~~H~~~V~sVa-s~~~~~l 621 (630)
+.+..+. ++...+..++|+|+ ++|+.++ .++.|.+||+.+++.+..+..... .+++ ++++..+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~s~dg~~l 286 (353)
T 3vgz_A 217 KILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES-LAVLFNPARNEA 286 (353)
T ss_dssp EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC-CCEEEETTTTEE
T ss_pred eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC-ceEEECCCCCEE
Confidence 6665554 35667899999999 7665555 569999999999999988872222 3455 6666543
No 158
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.64 E-value=5e-16 Score=177.14 Aligned_cols=251 Identities=8% Similarity=-0.116 Sum_probs=165.1
Q ss_pred EEEeec--ceEeecCCCccEecccCCCCceeEEecCCccC---CEEEEEEcCCCCeEEeecC---------CC-------
Q 006825 344 ELMRRQ--NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFK---SIRTVASSVTGHKERRSSD---------ER------- 402 (630)
Q Consensus 344 ~Lafs~--~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~---~V~sVAfSpdG~~lasgS~---------D~------- 402 (630)
.++|+| .++..+.|++++ +||+.+|+....+. +|.. .|.+++|||||++|+.++. +.
T Consensus 20 ~~~~s~dg~~~~~~~d~~i~-~~~~~~g~~~~~~~-~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~ 97 (719)
T 1z68_A 20 FPNWISGQEYLHQSADNNIV-LYNIETGQSYTILS-NRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL 97 (719)
T ss_dssp CCEESSSSEEEEECTTSCEE-EEESSSCCEEEEEC-HHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred ccEECCCCeEEEEcCCCCEE-EEEcCCCcEEEEEc-cccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence 667777 344445699999 99999999887776 6654 4899999999999998875 22
Q ss_pred CCccc---cCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCE-----------------E
Q 006825 403 DTSSE---KGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSI-----------------W 460 (630)
Q Consensus 403 dt~s~---~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V-----------------~ 460 (630)
+++.. ..-...+..+.+++++ ++.+ .++.|++|+..+++...+ +..+|...| .
T Consensus 98 ~~g~~~~~~~l~~~~~~~~~SPDG~~la~~-~~~~i~~~~~~~g~~~~l----~~~~~~~~v~~g~~~~v~~ee~~~~~~ 172 (719)
T 1z68_A 98 SNGEFVRGNELPRPIQYLCWSPVGSKLAYV-YQNNIYLKQRPGDPPFQI----TFNGRENKIFNGIPDWVYEEEMLATKY 172 (719)
T ss_dssp TTTEECCSSCCCSSBCCEEECSSTTCEEEE-ETTEEEEESSTTSCCEEC----CCCCBTTTEEESSCCHHHHHHTTCSSC
T ss_pred CCCccccceecCcccccceECCCCCEEEEE-ECCeEEEEeCCCCCcEEE----ecCCCcCCeEcccccceeeeecccCcc
Confidence 22222 2222456778899998 5555 478999999987653211 113333333 4
Q ss_pred EEEEccCCCEEEEEeCCC----------------------------------cEEEEECcCCcee--eeeec-ccccCcc
Q 006825 461 SIKFSLDGRYLASAGEDC----------------------------------VIHVWQVVESERK--GELLE-KQEDGHL 503 (630)
Q Consensus 461 sVaFSpDG~~LASgS~Dg----------------------------------tIrVWDl~tg~~~--~~l~~-~~~~gh~ 503 (630)
+++|||||++||+++.|. +|++||+.+++.. ..+.. ..+.+|.
T Consensus 173 ~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 252 (719)
T 1z68_A 173 ALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSD 252 (719)
T ss_dssp CEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSC
T ss_pred cEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCc
Confidence 899999999999998663 7899999887643 12110 1134678
Q ss_pred cceEEEEECCCCCEEEEeeCC--CeeeeecccccccccccccCccccccEEEe----C-CCCceEEe----ccCCCCEE-
Q 006825 504 NMLLLANGSPEPTSLSPKHLD--NHLEKKRRGRSINRKSLSLDHMVVPETVFA----L-SDKPICSF----QGHLDDVL- 571 (630)
Q Consensus 504 ~~V~svafSpdg~~lasgs~D--g~I~i~~~~~~~~~~s~s~d~~i~~~~Vwd----l-sgk~l~tL----~GHs~~V~- 571 (630)
..+..++|+||++++++.... ....+ .+|+ + ++++...+ .+|...|.
T Consensus 253 ~~~~~~~~SpD~~~~~~~~~~~~~~~~l---------------------~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~ 311 (719)
T 1z68_A 253 YYFSWLTWVTDERVCLQWLKRVQNVSVL---------------------SICDFREDWQTWDCPKTQEHIEESRTGWAGG 311 (719)
T ss_dssp EEEEEEEESSSSEEEEEEEESSTTEEEE---------------------EEEEECSSSSSEECCGGGEEEEECSSSCSSS
T ss_pred ceEEEeEEeCCCeEEEEEeccccCeEEE---------------------EEEcccCCCCCCceEEEEecccccCCceEcc
Confidence 889999999998877764322 22211 5566 5 34443333 47777777
Q ss_pred ----EEEEcCC-CeEE--EEECCC--cEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcEEEEe
Q 006825 572 ----DLSWSKS-QHLL--SSSMDK--TVRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLRFAYG 624 (630)
Q Consensus 572 ----sLafSPd-~~La--SgS~Dg--tVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~lAsg 624 (630)
.++|+|| +.|+ +...++ .|.+||+.+++ ...+. +...|..+. . ++..+++.
T Consensus 312 ~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~ 373 (719)
T 1z68_A 312 FFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYS 373 (719)
T ss_dssp SSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEE
T ss_pred ccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEE
Confidence 8999999 6444 344555 57777887776 34454 555566655 4 44444433
No 159
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.63 E-value=2.9e-14 Score=149.92 Aligned_cols=188 Identities=8% Similarity=-0.077 Sum_probs=128.0
Q ss_pred CCCccEecccCC-CCceeEEec---CCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCc
Q 006825 356 KDSFDLNNNGSS-GGGMKSKKK---GSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERV 431 (630)
Q Consensus 356 ~D~tvr~vWD~~-tG~~~~~lk---~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg 431 (630)
.+++++ +|++. .|+....+. ..+...+.+++|+|||++++.+ ...+.
T Consensus 117 ~~g~v~-v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~----------------------------~~~~~ 167 (365)
T 1jof_A 117 FAGYGN-VFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA----------------------------DLTAN 167 (365)
T ss_dssp SCCEEE-EEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE----------------------------ETTTT
T ss_pred CCceEE-EEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEE----------------------------cCCCC
Confidence 688999 99997 476554443 1356789999999999877532 22345
Q ss_pred EEEEEeCC-CCcccceeeeeEec--ccCcCEEEEEEccCCCEEEEEeC-CCcEEEEECc--CCceee---eeecc--ccc
Q 006825 432 RVRQYGKS-CKDLTALYKCQEIQ--AHNGSIWSIKFSLDGRYLASAGE-DCVIHVWQVV--ESERKG---ELLEK--QED 500 (630)
Q Consensus 432 ~VriWd~~-~~el~~~~~v~tL~--gHt~~V~sVaFSpDG~~LASgS~-DgtIrVWDl~--tg~~~~---~l~~~--~~~ 500 (630)
.|++|+.. ++++. .+..+. .|...+..++|+|||++|++++. +++|.+|++. +++... .+... ...
T Consensus 168 ~v~~~~~~~~g~~~---~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~ 244 (365)
T 1jof_A 168 KLWTHRKLASGEVE---LVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIP 244 (365)
T ss_dssp EEEEEEECTTSCEE---EEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCC
T ss_pred EEEEEEECCCCCEE---EeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcC
Confidence 79999987 55432 223343 35667999999999999988775 7899999875 454321 11100 012
Q ss_pred Cccc------ceEEEE-ECCCCCEEEEeeCCC------eeeeecccccccccccccCccccccEEEeC--CCCceE---E
Q 006825 501 GHLN------MLLLAN-GSPEPTSLSPKHLDN------HLEKKRRGRSINRKSLSLDHMVVPETVFAL--SDKPIC---S 562 (630)
Q Consensus 501 gh~~------~V~sva-fSpdg~~lasgs~Dg------~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl--sgk~l~---t 562 (630)
+|.. .+..++ |+|||++|+++..+. .| .+|++ +++... .
T Consensus 245 g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i-----------------------~v~~~~~~g~~~~~~~~ 301 (365)
T 1jof_A 245 DRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYI-----------------------AGFKLRDCGSIEKQLFL 301 (365)
T ss_dssp CBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEE-----------------------EEEEECTTSCEEEEEEE
T ss_pred CcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeE-----------------------EEEEECCCCCEEEeeee
Confidence 3332 578899 999999887765432 56 67776 344332 2
Q ss_pred eccCCCCEEEEEEcC---C-CeEEEEECC-CcEEEEeCCCC
Q 006825 563 FQGHLDDVLDLSWSK---S-QHLLSSSMD-KTVRLWHLSSK 598 (630)
Q Consensus 563 L~GHs~~V~sLafSP---d-~~LaSgS~D-gtVrIWDl~tg 598 (630)
+..+...+..++|+| + ++|++++.+ ++|+||++...
T Consensus 302 ~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 302 SPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred eecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 334555677899999 7 889888864 99999998766
No 160
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.62 E-value=1.6e-14 Score=162.95 Aligned_cols=258 Identities=8% Similarity=-0.098 Sum_probs=181.7
Q ss_pred eeeecCccceeEEEeec---ceEee--cCCCccEecccCCCCceeEEecCCccCCEE---------EEEEc--CCCCe-E
Q 006825 333 EMCVGHSPIVQELMRRQ---NVEEG--NKDSFDLNNNGSSGGGMKSKKKGSWFKSIR---------TVASS--VTGHK-E 395 (630)
Q Consensus 333 ~~l~GHs~~V~~Lafs~---~laSg--S~D~tvr~vWD~~tG~~~~~lk~gH~~~V~---------sVAfS--pdG~~-l 395 (630)
+.+.+|...|..++|++ ..++. +.+++.+ ||....+.....+. .|...|+ +.+|+ |||++ |
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~SPDg~~~l 94 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRAT-LVRRRADGAEESAL-PAPWNVRNRVFEYSGFPWAGVPRPAGGPLL 94 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEE-EEEECTTSCEEESS-CTTCCBCCCGGGTCCCCEEEECCSSSSCEE
T ss_pred HHHhhcCCccceeEEcCCeEEEEecCcccCCcEE-EEEECCCCCcceeC-CCCccccccccccCCccceeeeecCCCeEE
Confidence 45778999999999999 45555 5678888 99976666677777 6777777 67666 99998 8
Q ss_pred EeecCCC------CC-----c---cccC-----CcceEEEeecCCCe--EEEecCC----------cEEEEEeCCC----
Q 006825 396 RRSSDER------DT-----S---SEKG-----GRRSSSATDDSQDV--SFHGQER----------VRVRQYGKSC---- 440 (630)
Q Consensus 396 asgS~D~------dt-----~---s~~g-----h~~~Vsa~~~s~d~--l~Sgs~D----------g~VriWd~~~---- 440 (630)
+.+++.. +. + .+.. |...+....+++++ ++..+.+ ..|++|++.+
T Consensus 95 a~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 174 (662)
T 3azo_A 95 VFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAA 174 (662)
T ss_dssp EEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTT
T ss_pred EEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccc
Confidence 8766532 21 1 1334 56678888999998 6666665 6899999987
Q ss_pred --CcccceeeeeEec-ccCcCEEEEEEccCCCEEEEEeCCC--------cEEEEECc-CCc--eeeeeecccccCcccce
Q 006825 441 --KDLTALYKCQEIQ-AHNGSIWSIKFSLDGRYLASAGEDC--------VIHVWQVV-ESE--RKGELLEKQEDGHLNML 506 (630)
Q Consensus 441 --~el~~~~~v~tL~-gHt~~V~sVaFSpDG~~LASgS~Dg--------tIrVWDl~-tg~--~~~~l~~~~~~gh~~~V 506 (630)
++ ...+. .|...+..++|||||++|+.++.++ .|++||+. ++. ....+ ..+|...+
T Consensus 175 ~~~~------~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l----~~~~~~~~ 244 (662)
T 3azo_A 175 DRSA------VRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTL----LGGPEEAI 244 (662)
T ss_dssp CGGG------SEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEE----EEETTBCE
T ss_pred cCCc------eeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEe----CCCCCceE
Confidence 43 23455 6677889999999999999888654 79999998 562 33333 24456788
Q ss_pred EEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEec-cCCCC--------EEEEEEcC
Q 006825 507 LLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ-GHLDD--------VLDLSWSK 577 (630)
Q Consensus 507 ~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~-GHs~~--------V~sLafSP 577 (630)
..++|+|||++++++..++.+++ .+|++.+..+..+. +|... +..++|+|
T Consensus 245 ~~~~~spdg~l~~~~~~~~~~~l---------------------~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~ 303 (662)
T 3azo_A 245 AQAEWAPDGSLIVATDRTGWWNL---------------------HRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLA 303 (662)
T ss_dssp EEEEECTTSCEEEEECTTSSCEE---------------------EEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECT
T ss_pred cceEECCCCeEEEEECCCCCeEE---------------------EEEECCCCceeecccccccccCccccccCceEeEeC
Confidence 99999999998877777774422 34444222233332 23222 56789999
Q ss_pred C-CeEEEEECCCcEEEE--eCCCCcEEEEEe-cCCceEEE-E-cCCCcEEEEec
Q 006825 578 S-QHLLSSSMDKTVRLW--HLSSKTCLKIFS-HSDYDISL-V-DRLMLRFAYGA 625 (630)
Q Consensus 578 d-~~LaSgS~DgtVrIW--Dl~tg~~l~t~~-H~~~V~sV-a-s~~~~~lAsgs 625 (630)
+ .+++++.. ++++|| |+.+++ ++.+. |...+..+ + ++....+++.+
T Consensus 304 ~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~ 355 (662)
T 3azo_A 304 NGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAAS 355 (662)
T ss_dssp TSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEE
T ss_pred CCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcC
Confidence 8 88889988 999999 655565 66676 87888888 5 55545554443
No 161
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.62 E-value=6.7e-15 Score=167.83 Aligned_cols=255 Identities=10% Similarity=-0.048 Sum_probs=163.3
Q ss_pred eeEEEeec---ceEeecC---------CCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC----C--
Q 006825 342 VQELMRRQ---NVEEGNK---------DSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER----D-- 403 (630)
Q Consensus 342 V~~Lafs~---~laSgS~---------D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~----d-- 403 (630)
|..++|+| .|+.++. |++++ +||+.+|+.+...+ ....+..++|||||++|+.+++.. +
T Consensus 62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~-~~d~~~g~~~~~~~--l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~ 138 (719)
T 1z68_A 62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYY-IYDLSNGEFVRGNE--LPRPIQYLCWSPVGSKLAYVYQNNIYLKQRP 138 (719)
T ss_dssp CSEEEECTTSSEEEEEEEEEECSSSCEEEEEE-EEETTTTEECCSSC--CCSSBCCEEECSSTTCEEEEETTEEEEESST
T ss_pred eeeEEECCCCCeEEEEecCceeEEeecceEEE-EEECCCCcccccee--cCcccccceECCCCCEEEEEECCeEEEEeCC
Confidence 78899998 6777766 78999 99999998732111 124688899999999999987543 1
Q ss_pred Ccc-----ccCCcceE-----------------EEeecCCCe--EEEecCC-----------------------------
Q 006825 404 TSS-----EKGGRRSS-----------------SATDDSQDV--SFHGQER----------------------------- 430 (630)
Q Consensus 404 t~s-----~~gh~~~V-----------------sa~~~s~d~--l~Sgs~D----------------------------- 430 (630)
++. ..++...+ .++.+++++ ++.++.|
T Consensus 139 ~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g 218 (719)
T 1z68_A 139 GDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAG 218 (719)
T ss_dssp TSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTT
T ss_pred CCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCC
Confidence 111 12222222 368888887 6665533
Q ss_pred -----cEEEEEeCCCCccc---ceeeeeEecccCcCEEEEEEccCCCEEEEEeCC----CcEEEEE----CcCCceeeee
Q 006825 431 -----VRVRQYGKSCKDLT---ALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED----CVIHVWQ----VVESERKGEL 494 (630)
Q Consensus 431 -----g~VriWd~~~~el~---~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~D----gtIrVWD----l~tg~~~~~l 494 (630)
.+|++||+.+++.. .+.....+.+|...|..++|+||++++++.... ..|.+|| +.+++....+
T Consensus 219 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~ 298 (719)
T 1z68_A 219 AKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQ 298 (719)
T ss_dssp SCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGG
T ss_pred CCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEE
Confidence 28899999876531 111113356799999999999999888875432 2488899 7776654332
Q ss_pred ecccccCcccceE-----EEEECCCCCEEEE--eeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCC
Q 006825 495 LEKQEDGHLNMLL-----LANGSPEPTSLSP--KHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHL 567 (630)
Q Consensus 495 ~~~~~~gh~~~V~-----svafSpdg~~las--gs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs 567 (630)
. ....+|...+. .+.|+|||+.++. ...++...+ .+|++.+.....+..+.
T Consensus 299 ~-~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l---------------------~~~~~~~~~~~~lt~~~ 356 (719)
T 1z68_A 299 E-HIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHI---------------------HYIKDTVENAIQITSGK 356 (719)
T ss_dssp E-EEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEE---------------------EEESSCSTTCEECSCSS
T ss_pred e-cccccCCceEccccCCccEECCCCCeEEEEEEccCCceEE---------------------EEEECCCCceEecccCc
Confidence 0 00035555555 7899999986554 334443311 56666555567777777
Q ss_pred CCEEEEEEcCC-CeEEEEECC-----CcEEEEeCCC--Cc-EEEEEe-----cCCceEEEE-cCCCcEEE
Q 006825 568 DDVLDLSWSKS-QHLLSSSMD-----KTVRLWHLSS--KT-CLKIFS-----HSDYDISLV-DRLMLRFA 622 (630)
Q Consensus 568 ~~V~sLafSPd-~~LaSgS~D-----gtVrIWDl~t--g~-~l~t~~-----H~~~V~sVa-s~~~~~lA 622 (630)
..|..+.|+ + +.|+..+.+ ++++||.+.. +. ....+. |...+..+. ++++..++
T Consensus 357 ~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~ 425 (719)
T 1z68_A 357 WEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYA 425 (719)
T ss_dssp SCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEE
T ss_pred eEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEE
Confidence 788888877 7 766666554 8899998764 42 123332 444566665 44444443
No 162
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.60 E-value=1.1e-12 Score=136.41 Aligned_cols=251 Identities=10% Similarity=0.001 Sum_probs=156.2
Q ss_pred eeEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCC----CccEecccCCC--CceeE--EecCCccCCE
Q 006825 315 WKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKD----SFDLNNNGSSG--GGMKS--KKKGSWFKSI 383 (630)
Q Consensus 315 ~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D----~tvr~vWD~~t--G~~~~--~lk~gH~~~V 383 (630)
+....+..+|+...+. .+ |...+..|+|+| .|++++.+ +++. +|++.. |+... ... .+....
T Consensus 30 ~~~~~d~~~g~~~~~~---~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~-~~~~~~~~g~~~~~~~~~-~~~~~p 102 (361)
T 3scy_A 30 YTFRFNEETGESLPLS---DA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVS-AFAFDKEKGTLHLLNTQK-TMGADP 102 (361)
T ss_dssp EEEEEETTTCCEEEEE---EE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEE-EEEEETTTTEEEEEEEEE-CSSSCE
T ss_pred EEEEEeCCCCCEEEee---cc--cCCCCceEEECCCCCEEEEEEccCCCCCcEE-EEEEeCCCCcEEEeeEec-cCCCCc
Confidence 3334455677655222 22 677788899998 57777775 7888 998765 54322 222 345566
Q ss_pred EEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCc-ccceeeeeEec--------c
Q 006825 384 RTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKD-LTALYKCQEIQ--------A 454 (630)
Q Consensus 384 ~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~e-l~~~~~v~tL~--------g 454 (630)
..+++ +|++++ ++...++.|.+|++.... +.......... .
T Consensus 103 ~~~~~--dg~~l~----------------------------~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~ 152 (361)
T 3scy_A 103 CYLTT--NGKNIV----------------------------TANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQ 152 (361)
T ss_dssp EEEEE--CSSEEE----------------------------EEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTC
T ss_pred EEEEE--CCCEEE----------------------------EEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCcccc
Confidence 66776 776554 333457789999986432 21111111111 1
Q ss_pred cCcCEEEEEEccCCCEEEEEe-CCCcEEEEECcCCce------eeee--ecccccCcccceEEEEECCCCCEEEEee-CC
Q 006825 455 HNGSIWSIKFSLDGRYLASAG-EDCVIHVWQVVESER------KGEL--LEKQEDGHLNMLLLANGSPEPTSLSPKH-LD 524 (630)
Q Consensus 455 Ht~~V~sVaFSpDG~~LASgS-~DgtIrVWDl~tg~~------~~~l--~~~~~~gh~~~V~svafSpdg~~lasgs-~D 524 (630)
+...+.+++|+|||++|+.++ .++.|++|++..... +... .......+......++|+|+|++++.+. .+
T Consensus 153 ~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~ 232 (361)
T 3scy_A 153 TMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIG 232 (361)
T ss_dssp SSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT
T ss_pred CCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCC
Confidence 234468999999999665555 589999999875432 1100 0000123345577899999999877766 57
Q ss_pred CeeeeecccccccccccccCccccccEEEeC-CCCc--eEEe---ccCCCCEEEEEEcCC-CeEEEEEC--CCcEEEEeC
Q 006825 525 NHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKP--ICSF---QGHLDDVLDLSWSKS-QHLLSSSM--DKTVRLWHL 595 (630)
Q Consensus 525 g~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~--l~tL---~GHs~~V~sLafSPd-~~LaSgS~--DgtVrIWDl 595 (630)
+.| .+|++ +++. +..+ ..+...+..++|+|+ ++|+.+.. +++|+||++
T Consensus 233 ~~v-----------------------~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~ 289 (361)
T 3scy_A 233 GTV-----------------------IAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKV 289 (361)
T ss_dssp CEE-----------------------EEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEE
T ss_pred CeE-----------------------EEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEE
Confidence 788 55555 3322 2222 334456789999999 77765554 589999999
Q ss_pred C--CCc--EEEEEecCCceEEEE-cCCCcEEEEec
Q 006825 596 S--SKT--CLKIFSHSDYDISLV-DRLMLRFAYGA 625 (630)
Q Consensus 596 ~--tg~--~l~t~~H~~~V~sVa-s~~~~~lAsgs 625 (630)
. +++ .+..+.....+.+++ +|++.+++++.
T Consensus 290 ~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~ 324 (361)
T 3scy_A 290 DETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVAC 324 (361)
T ss_dssp CTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEE
T ss_pred cCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEE
Confidence 5 455 444444555678888 88888776664
No 163
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.60 E-value=1.1e-14 Score=168.01 Aligned_cols=258 Identities=9% Similarity=-0.077 Sum_probs=173.4
Q ss_pred CceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCC-----EEEEEEcCCCCeE
Q 006825 324 GRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKS-----IRTVASSVTGHKE 395 (630)
Q Consensus 324 G~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~-----V~sVAfSpdG~~l 395 (630)
++.+|++++.. -++.+....++|+| +++++ |++++ +||+.+|++...+. +|... ...++|||||++|
T Consensus 2 ~~~~tl~~~~~-~~~~~~~~~~~w~~dg~~~~~~--~~~i~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Spdg~~l 76 (740)
T 4a5s_A 2 RKTYTLTDYLK-NTYRLKLYSLRWISDHEYLYKQ--ENNIL-VFNAEYGNSSVFLE-NSTFDEFGHSINDYSISPDGQFI 76 (740)
T ss_dssp CEECCHHHHHH-TCSCCCCCCEEECSSSEEEEEE--TTEEE-EEETTTCCEEEEEC-TTTTTTCCSCCCEEEECTTSSEE
T ss_pred CCceeHHHHhc-CcccccccccEECCCCcEEEEc--CCcEE-EEECCCCceEEEEe-chhhhhhcccccceEECCCCCEE
Confidence 56677777642 23555677899998 56665 99999 99999999888777 66543 2447889999999
Q ss_pred EeecCCC----------------CC---ccccCCcceEEEeecCCCe--EEEecCCcEEEEEeCCCCcccceeeeeEecc
Q 006825 396 RRSSDER----------------DT---SSEKGGRRSSSATDDSQDV--SFHGQERVRVRQYGKSCKDLTALYKCQEIQA 454 (630)
Q Consensus 396 asgS~D~----------------dt---~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~g 454 (630)
+.++.++ .+ ..+.+|...+....+++++ ++.+ .+..|++|+..+++...+ +..+
T Consensus 77 ~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~l----t~~g 151 (740)
T 4a5s_A 77 LLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRI----TWTG 151 (740)
T ss_dssp EEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEEC----CSCC
T ss_pred EEEECCeeeEEEccceEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEE----cCCC
Confidence 9988742 11 2256667788999999999 5544 578999999987753211 2233
Q ss_pred cCcCE-----------------EEEEEccCCCEEEEEeCCC------------------------------------cEE
Q 006825 455 HNGSI-----------------WSIKFSLDGRYLASAGEDC------------------------------------VIH 481 (630)
Q Consensus 455 Ht~~V-----------------~sVaFSpDG~~LASgS~Dg------------------------------------tIr 481 (630)
+...+ ..+.|||||++||.++.|. +|+
T Consensus 152 ~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~ 231 (740)
T 4a5s_A 152 KEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFF 231 (740)
T ss_dssp BTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEE
T ss_pred CccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEE
Confidence 43333 3489999999999986443 478
Q ss_pred EEECcC---Cc--eeeeeec-ccccCcccceEEEEECCCCCEEEEeeCC----CeeeeecccccccccccccCccccccE
Q 006825 482 VWQVVE---SE--RKGELLE-KQEDGHLNMLLLANGSPEPTSLSPKHLD----NHLEKKRRGRSINRKSLSLDHMVVPET 551 (630)
Q Consensus 482 VWDl~t---g~--~~~~l~~-~~~~gh~~~V~svafSpdg~~lasgs~D----g~I~i~~~~~~~~~~s~s~d~~i~~~~ 551 (630)
|||+.+ ++ ....+.. ....+|...+..++|+|||++++..... ..| .
T Consensus 232 v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i-----------------------~ 288 (740)
T 4a5s_A 232 VVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVM-----------------------D 288 (740)
T ss_dssp EEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEE-----------------------E
T ss_pred EEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEE-----------------------E
Confidence 888887 63 2222210 0012477789999999999976654322 134 5
Q ss_pred EEeC-CCC------ceEEe--ccCCCCEE-----EEEEcCC-CeEE-EEECC---CcEEEEeCCCCcEEEEEecCCceEE
Q 006825 552 VFAL-SDK------PICSF--QGHLDDVL-----DLSWSKS-QHLL-SSSMD---KTVRLWHLSSKTCLKIFSHSDYDIS 612 (630)
Q Consensus 552 Vwdl-sgk------~l~tL--~GHs~~V~-----sLafSPd-~~La-SgS~D---gtVrIWDl~tg~~l~t~~H~~~V~s 612 (630)
+|++ +++ .+.++ .+|...|. .++|+|| +.|+ ..+.+ ..|++||+.++++...-...-.|..
T Consensus 289 ~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~ 368 (740)
T 4a5s_A 289 ICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIG 368 (740)
T ss_dssp EEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEE
T ss_pred EEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEE
Confidence 6666 454 12223 56776665 7899999 7666 66643 4688899987776543335555665
Q ss_pred EE
Q 006825 613 LV 614 (630)
Q Consensus 613 Va 614 (630)
+.
T Consensus 369 ~~ 370 (740)
T 4a5s_A 369 IE 370 (740)
T ss_dssp EE
T ss_pred EE
Confidence 55
No 164
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.57 E-value=2.8e-13 Score=156.33 Aligned_cols=312 Identities=11% Similarity=-0.017 Sum_probs=188.7
Q ss_pred ceeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEEEEee---------------ecCCCce---------
Q 006825 260 SMSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNE---------------IQEDGTW--------- 315 (630)
Q Consensus 260 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~~v~e---------------~~~dg~~--------- 315 (630)
++..+|||+++ +++ ++.+++|++++|+...+.. ...||..
T Consensus 21 ~~~w~~dg~~~--------------~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~ 84 (740)
T 4a5s_A 21 SLRWISDHEYL--------------YKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVK 84 (740)
T ss_dssp CEEECSSSEEE--------------EEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEE
T ss_pred ccEECCCCcEE--------------EEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCee
Confidence 58999999999 232 4578888888887544311 1345541
Q ss_pred ---------eEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCE
Q 006825 316 ---------KKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSI 383 (630)
Q Consensus 316 ---------~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V 383 (630)
..+||+.||+.. .+.+|...+...+|+| .||.+ .|+.+. +|++.+|+..+....++...+
T Consensus 85 ~~r~~~~~~~~~~d~~~~~~~------~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~-~~~~~~~~~~~lt~~g~~~~~ 156 (740)
T 4a5s_A 85 QWRHSYTASYDIYDLNKRQLI------TEERIPNNTQWVTWSPVGHKLAYV-WNNDIY-VKIEPNLPSYRITWTGKEDII 156 (740)
T ss_dssp CSSSCEEEEEEEEETTTTEEC------CSSCCCTTEEEEEECSSTTCEEEE-ETTEEE-EESSTTSCCEECCSCCBTTTE
T ss_pred eEEEccceEEEEEECCCCcEE------EcccCCCcceeeEECCCCCEEEEE-ECCeEE-EEECCCCceEEEcCCCCccce
Confidence 137888888754 4667888899999999 67776 468999 999999886654333554444
Q ss_pred -----------------EEEEEcCCCCeEEeecCCCC-Ccc--------ccCCcceEEEeecCCCeEEEecCCcEEEEEe
Q 006825 384 -----------------RTVASSVTGHKERRSSDERD-TSS--------EKGGRRSSSATDDSQDVSFHGQERVRVRQYG 437 (630)
Q Consensus 384 -----------------~sVAfSpdG~~lasgS~D~d-t~s--------~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd 437 (630)
++++|||||++|+..+.|.. ... ..++...+..+.+...+- .....+|++||
T Consensus 157 ~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~--~~~~~~l~v~d 234 (740)
T 4a5s_A 157 YNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGA--VNPTVKFFVVN 234 (740)
T ss_dssp EESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTS--CCCEEEEEEEE
T ss_pred ecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcC--cCCeeEEEEEE
Confidence 45999999999999876641 100 001333344444443330 12334799999
Q ss_pred CCC---CcccceeeeeEec------ccCcCEEEEEEccCCCEEEEEe----CCCcEEEEECcCCc----eeeeeeccccc
Q 006825 438 KSC---KDLTALYKCQEIQ------AHNGSIWSIKFSLDGRYLASAG----EDCVIHVWQVVESE----RKGELLEKQED 500 (630)
Q Consensus 438 ~~~---~el~~~~~v~tL~------gHt~~V~sVaFSpDG~~LASgS----~DgtIrVWDl~tg~----~~~~l~~~~~~ 500 (630)
+.+ ++... ...+. +|...|..++|+|||++++... .+..|++||+.+++ +..... ....
T Consensus 235 ~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~-l~~~ 310 (740)
T 4a5s_A 235 TDSLSSVTNAT---SIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQ-HIEM 310 (740)
T ss_dssp TTSCCSSSCCC---EEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGC-EEEE
T ss_pred CCCCCCCCcce---EEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEE-eeec
Confidence 987 62101 12232 5889999999999999776653 34579999999887 222110 0013
Q ss_pred CcccceE-----EEEECCCCCEEE-Eee-CCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEE
Q 006825 501 GHLNMLL-----LANGSPEPTSLS-PKH-LDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDL 573 (630)
Q Consensus 501 gh~~~V~-----svafSpdg~~la-sgs-~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sL 573 (630)
+|...+. .+.|+|||+.|+ ..+ .++.-.+ .+|+..+.....+......|..+
T Consensus 311 ~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l---------------------~~~~~~~~~~~~lT~g~~~v~~~ 369 (740)
T 4a5s_A 311 STTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHI---------------------CYFQIDKKDCTFITKGTWEVIGI 369 (740)
T ss_dssp CSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEE---------------------EEEETTCSSCEESCCSSSCEEEE
T ss_pred cCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEE---------------------EEEECCCCceEecccCCEEEEEE
Confidence 3444433 678999999877 554 3332211 66777666666666556667665
Q ss_pred E-EcCCCeE-EEEEC----CCcEEEE--eCCCCcEEEEEe-----cCCceEEEE-cCCCcEEEE
Q 006825 574 S-WSKSQHL-LSSSM----DKTVRLW--HLSSKTCLKIFS-----HSDYDISLV-DRLMLRFAY 623 (630)
Q Consensus 574 a-fSPd~~L-aSgS~----DgtVrIW--Dl~tg~~l~t~~-----H~~~V~sVa-s~~~~~lAs 623 (630)
. |. ++.| .++.. -+...|| ++..+.....+. ....+..+. ++++..++.
T Consensus 370 ~~~d-~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~ 432 (740)
T 4a5s_A 370 EALT-SDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQL 432 (740)
T ss_dssp EEEC-SSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEE
T ss_pred EEEe-CCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEE
Confidence 4 33 3444 44444 2334455 444433322333 123455555 666655543
No 165
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.57 E-value=4.3e-13 Score=139.92 Aligned_cols=259 Identities=6% Similarity=-0.088 Sum_probs=159.6
Q ss_pred EEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEE--EEcCCC
Q 006825 318 VKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTV--ASSVTG 392 (630)
Q Consensus 318 l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sV--AfSpdG 392 (630)
++++.+|+.. ....+|...+..++|+| .|+.++.+..+. +||+.+|+...... .+...+... +++|+|
T Consensus 64 ~~d~~~g~~~-----~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~-~~d~~~g~~~~~~~-~~~~~~~~~~~~~~~dg 136 (388)
T 3pe7_A 64 LLDLNTQVAT-----QLTEGRGDNTFGGFLSPDDDALFYVKDGRNLM-RVDLATLEENVVYQ-VPAEWVGYGTWVANSDC 136 (388)
T ss_dssp EEETTTCEEE-----ECCCSSCBCSSSCEECTTSSEEEEEETTTEEE-EEETTTCCEEEEEE-CCTTEEEEEEEEECTTS
T ss_pred EEeCCCCceE-----EeeeCCCCCccceEEcCCCCEEEEEeCCCeEE-EEECCCCcceeeee-chhhcccccceeECCCC
Confidence 4455555544 33445666666678988 688888899999 99999998877666 565555443 358999
Q ss_pred CeEEeecCCCCC-ccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc-CCCE
Q 006825 393 HKERRSSDERDT-SSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRY 470 (630)
Q Consensus 393 ~~lasgS~D~dt-~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp-DG~~ 470 (630)
++++....+... .......... ..+....+..|++||+.+++. ..+..|...+..++|+| ||++
T Consensus 137 ~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~d~~~g~~------~~l~~~~~~~~~~~~sp~dg~~ 202 (388)
T 3pe7_A 137 TKLVGIEIRREDWVPLTDWKKFH--------EFYFTKPCCRLMRVDLKTGES------TVILQENQWLGHPIYRPYDDST 202 (388)
T ss_dssp SEEEEEEEEGGGCCCCCSHHHHH--------HHGGGCCCEEEEEEETTTCCE------EEEEEESSCEEEEEEETTEEEE
T ss_pred CeeccccccCcccccccccchhh--------hhhccCCcceEEEEECCCCce------EEeecCCccccccEECCCCCCE
Confidence 988642211100 0000000000 011233457899999987753 44556778899999999 9999
Q ss_pred EEEEeCC------CcEEEEECcCCceeeeeecccccCcc-cceEEEEECCCCCEEEEeeCC-C----eeeeecccccccc
Q 006825 471 LASAGED------CVIHVWQVVESERKGELLEKQEDGHL-NMLLLANGSPEPTSLSPKHLD-N----HLEKKRRGRSINR 538 (630)
Q Consensus 471 LASgS~D------gtIrVWDl~tg~~~~~l~~~~~~gh~-~~V~svafSpdg~~lasgs~D-g----~I~i~~~~~~~~~ 538 (630)
|+..+.+ ..|.+||+..+.. ..+ ...+. ..+..++|+|||+.|+..+.. + .|
T Consensus 203 l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l----~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l----------- 266 (388)
T 3pe7_A 203 VAFCHEGPHDLVDARMWLINEDGTNM-RKV----KTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFI----------- 266 (388)
T ss_dssp EEEEECSCTTTSSCSEEEEETTSCCC-EES----CCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEE-----------
T ss_pred EEEEEecCCCCCcceEEEEeCCCCce-EEe----eeCCCCcccccceECCCCCEEEEEecCCCCCcceE-----------
Confidence 9888764 3677788765443 332 12222 357788999999977664432 2 14
Q ss_pred cccccCccccccEEEeC-CCC--ceEEeccCCCC---EEEEEEcCC-CeEEEE---------ECCCcEEEEeCCCCcEEE
Q 006825 539 KSLSLDHMVVPETVFAL-SDK--PICSFQGHLDD---VLDLSWSKS-QHLLSS---------SMDKTVRLWHLSSKTCLK 602 (630)
Q Consensus 539 ~s~s~d~~i~~~~Vwdl-sgk--~l~tL~GHs~~---V~sLafSPd-~~LaSg---------S~DgtVrIWDl~tg~~l~ 602 (630)
.+|++ +++ .+..+.++... ...++|+|| ++|+.. ..+..|++||+.+++...
T Consensus 267 ------------~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 334 (388)
T 3pe7_A 267 ------------YSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHR 334 (388)
T ss_dssp ------------EEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEE
T ss_pred ------------EEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEE
Confidence 66776 333 23333331111 112379999 666643 557799999999987654
Q ss_pred EEecCC-----------ceEEEE-cCCCcEEEEec
Q 006825 603 IFSHSD-----------YDISLV-DRLMLRFAYGA 625 (630)
Q Consensus 603 t~~H~~-----------~V~sVa-s~~~~~lAsgs 625 (630)
...|.. .+.+++ +|++..+++.+
T Consensus 335 l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s 369 (388)
T 3pe7_A 335 VARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTS 369 (388)
T ss_dssp EEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEE
T ss_pred eccccCcccccccccccCCCCccCCCCCCEEEEEe
Confidence 444655 467777 88888777664
No 166
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.56 E-value=1.8e-12 Score=134.53 Aligned_cols=228 Identities=12% Similarity=0.053 Sum_probs=169.3
Q ss_pred cceeEEEeec---ceEeecCC------------------------CccEecccCCCCceeEEecCCccCCEEEEEEcCCC
Q 006825 340 PIVQELMRRQ---NVEEGNKD------------------------SFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTG 392 (630)
Q Consensus 340 ~~V~~Lafs~---~laSgS~D------------------------~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG 392 (630)
..|..|++.| .+++.+.+ +++. +||..+|+.+..+..++......||++++|
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTIL-VIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEE-EECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEE-EEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 5578888887 45666666 3688 999999998877765788889999999998
Q ss_pred CeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEe---------cccCcCEEEEE
Q 006825 393 HKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEI---------QAHNGSIWSIK 463 (630)
Q Consensus 393 ~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL---------~gHt~~V~sVa 463 (630)
++++ +...+.+|++|+...... .+.++ .++......|+
T Consensus 103 ~l~v-----------------------------~d~~~~~v~~~~~~g~~~----~~~~~~~~~~~g~~~~~~~~P~~ia 149 (329)
T 3fvz_A 103 NYWV-----------------------------TDVALHQVFKLDPHSKEG----PLLILGRSMQPGSDQNHFCQPTDVA 149 (329)
T ss_dssp CEEE-----------------------------EETTTTEEEEECTTCSSC----CSEEESBTTBCCCSTTCCSSEEEEE
T ss_pred CEEE-----------------------------EECCCCEEEEEeCCCCeE----EEEEecccCCCCCCccccCCCcEEE
Confidence 7554 334566899998765421 12333 45666899999
Q ss_pred Ecc-CCCEEEEEe-CCCcEEEEECcCCceeeeeecccc-----cCcccceEEEEECCC-CCEEEEeeCCCeeeeeccccc
Q 006825 464 FSL-DGRYLASAG-EDCVIHVWQVVESERKGELLEKQE-----DGHLNMLLLANGSPE-PTSLSPKHLDNHLEKKRRGRS 535 (630)
Q Consensus 464 FSp-DG~~LASgS-~DgtIrVWDl~tg~~~~~l~~~~~-----~gh~~~V~svafSpd-g~~lasgs~Dg~I~i~~~~~~ 535 (630)
|+| +|+++++.+ .++.|++|+ .++..+..+..... .++......++++|+ +.++++...++.|
T Consensus 150 ~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I-------- 220 (329)
T 3fvz_A 150 VEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRI-------- 220 (329)
T ss_dssp ECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEE--------
T ss_pred EeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEE--------
Confidence 999 899999887 699999999 46666555421110 134455789999998 8888888888888
Q ss_pred ccccccccCccccccEEEeCC-CCceEEec--cCCCCEEEEEEcCC-------CeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825 536 INRKSLSLDHMVVPETVFALS-DKPICSFQ--GHLDDVLDLSWSKS-------QHLLSSSMDKTVRLWHLSSKTCLKIFS 605 (630)
Q Consensus 536 ~~~~s~s~d~~i~~~~Vwdls-gk~l~tL~--GHs~~V~sLafSPd-------~~LaSgS~DgtVrIWDl~tg~~l~t~~ 605 (630)
.+|+.. |+.+.++. ++...+..++|+|. ..+++...+.+|++|++.+++.+.++.
T Consensus 221 ---------------~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~ 285 (329)
T 3fvz_A 221 ---------------QCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFK 285 (329)
T ss_dssp ---------------EEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEEC
T ss_pred ---------------EEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEc
Confidence 788885 88888874 56678999999993 222233345699999999999999983
Q ss_pred ----cCCceEEEE-cCCCcEEEEec
Q 006825 606 ----HSDYDISLV-DRLMLRFAYGA 625 (630)
Q Consensus 606 ----H~~~V~sVa-s~~~~~lAsgs 625 (630)
+...+..|+ ++++..++++.
T Consensus 286 ~~~~~~~~p~~ia~~~dG~lyvad~ 310 (329)
T 3fvz_A 286 PVRKHFDMPHDIVASEDGTVYIGDA 310 (329)
T ss_dssp CSSSCCSSEEEEEECTTSEEEEEES
T ss_pred CCCCccCCeeEEEECCCCCEEEEEC
Confidence 778899999 88887776664
No 167
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.55 E-value=9.8e-12 Score=124.91 Aligned_cols=198 Identities=11% Similarity=0.084 Sum_probs=145.5
Q ss_pred cCccceeEEEee-c---ceEeec-CCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCc
Q 006825 337 GHSPIVQELMRR-Q---NVEEGN-KDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGR 411 (630)
Q Consensus 337 GHs~~V~~Lafs-~---~laSgS-~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~ 411 (630)
+|...+..|++. + .+++.. .+..++ +|| .+|+.+.++...+...+..++++++|+++++
T Consensus 74 ~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~-~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~-------------- 137 (286)
T 1q7f_A 74 SQLLYPNRVAVVRNSGDIIVTERSPTHQIQ-IYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVV-------------- 137 (286)
T ss_dssp TCBSSEEEEEEETTTTEEEEEECGGGCEEE-EEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEE--------------
T ss_pred ccccCceEEEEEcCCCeEEEEcCCCCCEEE-EEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEE--------------
Confidence 455678889984 4 334432 378899 999 6788877776567778999999999875543
Q ss_pred ceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEec--ccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCc
Q 006825 412 RSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQ--AHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE 489 (630)
Q Consensus 412 ~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~--gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~ 489 (630)
...++.|++|+.... .+..+. ++...+..|+|+++|+++++...++.|++|+.. ++
T Consensus 138 ---------------~~~~~~i~~~~~~g~------~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~ 195 (286)
T 1q7f_A 138 ---------------ECKVMRVIIFDQNGN------VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQ 195 (286)
T ss_dssp ---------------ETTTTEEEEECTTSC------EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CC
T ss_pred ---------------ECCCCEEEEEcCCCC------EEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CC
Confidence 334567899986533 123332 566679999999999999988889999999974 44
Q ss_pred eeeeeecccccCcccceEEEEECCCCCEEEEeeCCC-eeeeecccccccccccccCccccccEEEeCCCCceEEeccCCC
Q 006825 490 RKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN-HLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLD 568 (630)
Q Consensus 490 ~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg-~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~ 568 (630)
.+..+. ..++...+..++++++|.++++...++ .| .+|+..++.+..+..+..
T Consensus 196 ~~~~~~---~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i-----------------------~~~~~~g~~~~~~~~~~~ 249 (286)
T 1q7f_A 196 YLRQIG---GEGITNYPIGVGINSNGEILIADNHNNFNL-----------------------TIFTQDGQLISALESKVK 249 (286)
T ss_dssp EEEEES---CTTTSCSEEEEEECTTCCEEEEECSSSCEE-----------------------EEECTTSCEEEEEEESSC
T ss_pred EEEEEc---cCCccCCCcEEEECCCCCEEEEeCCCCEEE-----------------------EEECCCCCEEEEEcccCC
Confidence 444431 123446788999999999998887775 78 778877777777766543
Q ss_pred --CEEEEEEcCC-CeEEEEECCCcEEEEeCCCCc
Q 006825 569 --DVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKT 599 (630)
Q Consensus 569 --~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~ 599 (630)
.+.+++|+|+ .++++ +.|++|++|++....
T Consensus 250 ~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 250 HAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp CSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred CCcceeEEECCCCcEEEE-CCCCeEEEEEccccc
Confidence 4789999999 55555 689999999986543
No 168
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.53 E-value=1.3e-12 Score=137.29 Aligned_cols=259 Identities=11% Similarity=-0.032 Sum_probs=156.8
Q ss_pred EEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCC-CCceeEEecCCccCCEEEEEEcCCCC
Q 006825 318 VKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSS-GGGMKSKKKGSWFKSIRTVASSVTGH 393 (630)
Q Consensus 318 l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~-tG~~~~~lk~gH~~~V~sVAfSpdG~ 393 (630)
-.+..+|+.-.+.. ...++...+..|+|+| .|++++.+ ++. +|++. +|+........-.+.+..++|+|||+
T Consensus 20 ~~d~~~g~l~~~~~--~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~-~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~ 95 (365)
T 1jof_A 20 QFDDEKLTCKLIKR--TEIPQDEPISWMTFDHERKNIYGAAMK-KWS-SFAVKSPTEIVHEASHPIGGHPRANDADTNTR 95 (365)
T ss_dssp EEETTTTEEEEEEE--EECCTTCCCSEEEECTTSSEEEEEEBT-EEE-EEEEEETTEEEEEEEEECCSSGGGGCTTSCCE
T ss_pred EEECCCCCEEEeeE--EccCCCCCCcEEEECCCCCEEEEEccc-eEE-EEEECCCCCEEEeeEeecCCCCccEEECCCCC
Confidence 34556775431111 1123445678899998 58888888 888 99997 88765433210012345589999998
Q ss_pred e--EEeecCCCCCccccCCcceEEEeecCCCeEEEec----CCcEEEEEeCCC-CcccceeeeeEec-ccCcCEEEEEEc
Q 006825 394 K--ERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQ----ERVRVRQYGKSC-KDLTALYKCQEIQ-AHNGSIWSIKFS 465 (630)
Q Consensus 394 ~--lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs----~Dg~VriWd~~~-~el~~~~~v~tL~-gHt~~V~sVaFS 465 (630)
+ +++++.++ ....+. .++++.+|++.. +++.. .+..+. .+...+.+++|+
T Consensus 96 ~l~~~~~~~~~--------------------~~~~~~~~~~~~g~v~v~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~s 153 (365)
T 1jof_A 96 AIFLLAAKQPP--------------------YAVYANPFYKFAGYGNVFSVSETGKLEK--NVQNYEYQENTGIHGMVFD 153 (365)
T ss_dssp EEEEEECSSTT--------------------CCEEEEEESSSCCEEEEEEECTTCCEEE--EEEEEECCTTCCEEEEEEC
T ss_pred EEEEEEecCCc--------------------ceeccceeecCCceEEEEccCCCCcCcc--eEeeEEeCCCCcceEEEEC
Confidence 4 33322100 000111 577899999863 33211 112221 356679999999
Q ss_pred cCCCEEEEEeC-CCcEEEEECc-CCceeeeeecccccCcccceEEEEECCCCCEEEEeeC-CCeeeeecccccccccccc
Q 006825 466 LDGRYLASAGE-DCVIHVWQVV-ESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHL-DNHLEKKRRGRSINRKSLS 542 (630)
Q Consensus 466 pDG~~LASgS~-DgtIrVWDl~-tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~-Dg~I~i~~~~~~~~~~s~s 542 (630)
|||++|+++.. ++.|++|++. +++..... ......|...+..++|+|+|++++++.. ++.|.
T Consensus 154 pdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~-~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~-------------- 218 (365)
T 1jof_A 154 PTETYLYSADLTANKLWTHRKLASGEVELVG-SVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRIC-------------- 218 (365)
T ss_dssp TTSSEEEEEETTTTEEEEEEECTTSCEEEEE-EEECSSTTCCEEEEEECTTSSEEEEEETTTTEEE--------------
T ss_pred CCCCEEEEEcCCCCEEEEEEECCCCCEEEee-eEecCCCCCCCCEeEECCCCCEEEEEECCCCeEE--------------
Confidence 99998887764 6899999998 66543211 0001123456889999999998877664 56774
Q ss_pred cCccccccEEEeC---CCCce---EE---e----ccCCC------CEEEEE-EcCC-CeEEEEECC-C-----cEEEEeC
Q 006825 543 LDHMVVPETVFAL---SDKPI---CS---F----QGHLD------DVLDLS-WSKS-QHLLSSSMD-K-----TVRLWHL 595 (630)
Q Consensus 543 ~d~~i~~~~Vwdl---sgk~l---~t---L----~GHs~------~V~sLa-fSPd-~~LaSgS~D-g-----tVrIWDl 595 (630)
+|++ +++.. .. + .+|.. .+..++ |+|| ++|+++..+ . +|++|++
T Consensus 219 ---------v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~ 289 (365)
T 1jof_A 219 ---------EYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKL 289 (365)
T ss_dssp ---------EEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEE
T ss_pred ---------EEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEE
Confidence 4432 23321 11 1 23333 588999 9999 777766543 3 8999999
Q ss_pred C-CCcEEE---EEe-cCCceEEEE-cC---CCcEEEEecc
Q 006825 596 S-SKTCLK---IFS-HSDYDISLV-DR---LMLRFAYGAF 626 (630)
Q Consensus 596 ~-tg~~l~---t~~-H~~~V~sVa-s~---~~~~lAsgs~ 626 (630)
. +++... .+. +...+..++ +| ++.+++++..
T Consensus 290 ~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~ 329 (365)
T 1jof_A 290 RDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDD 329 (365)
T ss_dssp CTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECS
T ss_pred CCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEc
Confidence 6 677554 233 455556666 67 6777776643
No 169
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.52 E-value=4.6e-12 Score=134.13 Aligned_cols=259 Identities=8% Similarity=0.004 Sum_probs=154.8
Q ss_pred eeEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeec----------CCCccEecccCCCCceeEEecCC---
Q 006825 315 WKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGN----------KDSFDLNNNGSSGGGMKSKKKGS--- 378 (630)
Q Consensus 315 ~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS----------~D~tvr~vWD~~tG~~~~~lk~g--- 378 (630)
...++|..||+.+ .++..+... .++|+| .|..++ .+++|. +||..+++.+.++..+
T Consensus 32 ~v~v~D~~t~~~~-----~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~-v~d~~t~~~~~~i~~~~~~ 103 (361)
T 2oiz_A 32 RVHVYDYTNGKFL-----GMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVE-VWDADKLTFEKEISLPPKR 103 (361)
T ss_dssp EEEEEETTTCCEE-----EEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEE-EEETTTCCEEEEEEECTTB
T ss_pred eEEEEECCCCeEE-----EEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEE-EEECcCCcEEEEEEcCccc
Confidence 4668888898877 455555444 899999 444443 467899 9999999988877632
Q ss_pred --ccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeE-eccc
Q 006825 379 --WFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQE-IQAH 455 (630)
Q Consensus 379 --H~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~t-L~gH 455 (630)
+......++|+|||++|..++ ...+.+|.+||..+++. +.+ +. +
T Consensus 104 ~~~g~~p~~i~~spdg~~l~v~n---------------------------~~~~~~v~v~d~~~~~~-----~~~~i~-~ 150 (361)
T 2oiz_A 104 VQGLNYDGLFRQTTDGKFIVLQN---------------------------ASPATSIGIVDVAKGDY-----VEDVTA-A 150 (361)
T ss_dssp CCBCCCGGGEEECTTSSEEEEEE---------------------------ESSSEEEEEEETTTTEE-----EEEEGG-G
T ss_pred cccCCCcceEEECCCCCEEEEEC---------------------------CCCCCeEEEEECCCCcE-----EEEEec-C
Confidence 234456789999999875321 11256799999887642 334 32 2
Q ss_pred CcCEEEEEEccCC-CEEEEEeCCCcEEEEECcC-Cceeeeeec-ccccCcccceEEEEECCCCCEEEEeeCCCeeeeecc
Q 006825 456 NGSIWSIKFSLDG-RYLASAGEDCVIHVWQVVE-SERKGELLE-KQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRR 532 (630)
Q Consensus 456 t~~V~sVaFSpDG-~~LASgS~DgtIrVWDl~t-g~~~~~l~~-~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~ 532 (630)
. ..+.+.+.|++ ..+++.+.||++.+|++.. ++....... ..+......+ .+.+++++..++..+.++.+.+++.
T Consensus 151 ~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~ 228 (361)
T 2oiz_A 151 A-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADF 228 (361)
T ss_dssp T-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEEC
T ss_pred C-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEe
Confidence 1 22335667765 5677778888888887754 332211000 0001111111 1111223322222223333333222
Q ss_pred ccc------------------------ccccccccCcc--c----------------cccEEEeC-CCCceEEeccCCCC
Q 006825 533 GRS------------------------INRKSLSLDHM--V----------------VPETVFAL-SDKPICSFQGHLDD 569 (630)
Q Consensus 533 ~~~------------------------~~~~s~s~d~~--i----------------~~~~Vwdl-sgk~l~tL~GHs~~ 569 (630)
... .....++.+.. + ..-.+|++ +++.+.++..|.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-- 306 (361)
T 2oiz_A 229 SGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-- 306 (361)
T ss_dssp SSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--
T ss_pred cCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--
Confidence 100 00001111100 0 00156787 788899998887
Q ss_pred EEEEEEcCC-CeEEEEECCCcEEEEeCCCC--cEEEEEe-cCCceEEEE-cCCCc
Q 006825 570 VLDLSWSKS-QHLLSSSMDKTVRLWHLSSK--TCLKIFS-HSDYDISLV-DRLML 619 (630)
Q Consensus 570 V~sLafSPd-~~LaSgS~DgtVrIWDl~tg--~~l~t~~-H~~~V~sVa-s~~~~ 619 (630)
+..|+|+|+ ++|++++. ++|.+||+.++ ++++++. +....+.++ .|++.
T Consensus 307 p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 307 ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 999999999 88887776 99999999999 9999984 777778887 77654
No 170
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.51 E-value=2.8e-11 Score=121.54 Aligned_cols=226 Identities=7% Similarity=0.009 Sum_probs=162.7
Q ss_pred ecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecC-----CccCCEEEEEE-cCCCCeEEeecCCCCCcc
Q 006825 336 VGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKG-----SWFKSIRTVAS-SVTGHKERRSSDERDTSS 406 (630)
Q Consensus 336 ~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~-----gH~~~V~sVAf-SpdG~~lasgS~D~dt~s 406 (630)
.||-..+..|++.+ .+++.+.++.|. +||.. |+.+..+.. +|...+..+++ .++|.++++.
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~-~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~-------- 95 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQ-IFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTE-------- 95 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEE-EECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEE--------
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEE-EECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEc--------
Confidence 35556778888887 466777889999 99986 666665531 46677888888 4666544321
Q ss_pred ccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEec-ccCcCEEEEEEccCCCEEEEEeCCCcEEEEEC
Q 006825 407 EKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQ-AHNGSIWSIKFSLDGRYLASAGEDCVIHVWQV 485 (630)
Q Consensus 407 ~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~-gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl 485 (630)
...++.|++|+.... .+..+. .+...+..|+|+++|+++++...++.|.+|+.
T Consensus 96 --------------------~~~~~~i~~~d~~g~------~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~ 149 (286)
T 1q7f_A 96 --------------------RSPTHQIQIYNQYGQ------FVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ 149 (286)
T ss_dssp --------------------CGGGCEEEEECTTSC------EEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred --------------------CCCCCEEEEECCCCc------EEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC
Confidence 112567999985432 223332 35567899999999999998888999999996
Q ss_pred cCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEecc
Q 006825 486 VESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQG 565 (630)
Q Consensus 486 ~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~G 565 (630)
. ++....+. ..++...+..+++++++.++++...++.| .+|+..++.+.++..
T Consensus 150 ~-g~~~~~~~---~~~~~~~p~~i~~~~~g~l~v~~~~~~~i-----------------------~~~~~~g~~~~~~~~ 202 (286)
T 1q7f_A 150 N-GNVLHKFG---CSKHLEFPNGVVVNDKQEIFISDNRAHCV-----------------------KVFNYEGQYLRQIGG 202 (286)
T ss_dssp T-SCEEEEEE---CTTTCSSEEEEEECSSSEEEEEEGGGTEE-----------------------EEEETTCCEEEEESC
T ss_pred C-CCEEEEeC---CCCccCCcEEEEECCCCCEEEEECCCCEE-----------------------EEEcCCCCEEEEEcc
Confidence 4 45444431 12445668899999999988888778888 777777777777754
Q ss_pred C--CCCEEEEEEcCC-CeEEEEECCC-cEEEEeCCCCcEEEEEe-cC--CceEEEE-cCCCcEEEEec
Q 006825 566 H--LDDVLDLSWSKS-QHLLSSSMDK-TVRLWHLSSKTCLKIFS-HS--DYDISLV-DRLMLRFAYGA 625 (630)
Q Consensus 566 H--s~~V~sLafSPd-~~LaSgS~Dg-tVrIWDl~tg~~l~t~~-H~--~~V~sVa-s~~~~~lAsgs 625 (630)
+ ...+..|+++++ .++++...++ .|++||. +++.+..+. +. ..+.+++ ++++..++++.
T Consensus 203 ~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs~~ 269 (286)
T 1q7f_A 203 EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLASK 269 (286)
T ss_dssp TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEEET
T ss_pred CCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEECC
Confidence 3 467899999999 7778887786 9999995 677888886 43 3477888 77777776653
No 171
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.49 E-value=2e-12 Score=134.82 Aligned_cols=222 Identities=9% Similarity=-0.069 Sum_probs=151.2
Q ss_pred EEEEcCCCceEeeecceeeecCccceeE-----EEeec---ceEeecC-CCc--cEecccCCCCceeEEecCCccCCEEE
Q 006825 317 KVKEVGTGRQLTIEEFEMCVGHSPIVQE-----LMRRQ---NVEEGNK-DSF--DLNNNGSSGGGMKSKKKGSWFKSIRT 385 (630)
Q Consensus 317 ~l~dv~TG~~lt~eef~~l~GHs~~V~~-----Lafs~---~laSgS~-D~t--vr~vWD~~tG~~~~~lk~gH~~~V~s 385 (630)
...+..+|..+ .++..|...+.. .+|+| .|+.++. +++ +. +||+.+|+...... +|...+..
T Consensus 13 ~~~~~~~g~~~-----~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~-~~d~~~g~~~~lt~-~~~~~~~~ 85 (388)
T 3pe7_A 13 TYQDASTGAQV-----TRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYY-LLDLNTQVATQLTE-GRGDNTFG 85 (388)
T ss_dssp EEECTTTCCEE-----EECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEE-EEETTTCEEEECCC-SSCBCSSS
T ss_pred EEecCCCCcce-----EEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEE-EEeCCCCceEEeee-CCCCCccc
Confidence 45677788877 667777665555 78998 5777776 664 66 77998888776665 77777767
Q ss_pred EEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEE--
Q 006825 386 VASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIK-- 463 (630)
Q Consensus 386 VAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVa-- 463 (630)
++|+|||++|+..+ .+..|++||+.+++. ...+..+...+....
T Consensus 86 ~~~spdg~~l~~~~-----------------------------~~~~l~~~d~~~g~~-----~~~~~~~~~~~~~~~~~ 131 (388)
T 3pe7_A 86 GFLSPDDDALFYVK-----------------------------DGRNLMRVDLATLEE-----NVVYQVPAEWVGYGTWV 131 (388)
T ss_dssp CEECTTSSEEEEEE-----------------------------TTTEEEEEETTTCCE-----EEEEECCTTEEEEEEEE
T ss_pred eEEcCCCCEEEEEe-----------------------------CCCeEEEEECCCCcc-----eeeeechhhccccccee
Confidence 89999999886432 345799999988753 233445555554444
Q ss_pred EccCCCEEEEE----------------------eCCCcEEEEECcCCceeeeeecccccCcccceEEEEECC-CCCEEEE
Q 006825 464 FSLDGRYLASA----------------------GEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSP-EPTSLSP 520 (630)
Q Consensus 464 FSpDG~~LASg----------------------S~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSp-dg~~las 520 (630)
++|+|++|+.. ..+..|.+||+.+++.... ..+...+..++|+| +|+.|+.
T Consensus 132 ~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l------~~~~~~~~~~~~sp~dg~~l~~ 205 (388)
T 3pe7_A 132 ANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVI------LQENQWLGHPIYRPYDDSTVAF 205 (388)
T ss_dssp ECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEE------EEESSCEEEEEEETTEEEEEEE
T ss_pred ECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEe------ecCCccccccEECCCCCCEEEE
Confidence 48999998743 3457899999998864433 23455688999999 9998887
Q ss_pred eeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCC--CCEEEEEEcCC-CeEEEEEC--CC---cEEE
Q 006825 521 KHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHL--DDVLDLSWSKS-QHLLSSSM--DK---TVRL 592 (630)
Q Consensus 521 gs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs--~~V~sLafSPd-~~LaSgS~--Dg---tVrI 592 (630)
...+.. ... ...+ .+++..+..+..+..+. ..+..++|+|| ++|+..+. ++ .|++
T Consensus 206 ~~~~~~----~~~----------~~~l---~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 268 (388)
T 3pe7_A 206 CHEGPH----DLV----------DARM---WLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYS 268 (388)
T ss_dssp EECSCT----TTS----------SCSE---EEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEE
T ss_pred EEecCC----CCC----------cceE---EEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEE
Confidence 765320 000 0000 45566666666666665 35888999999 76665443 22 3999
Q ss_pred EeCCCCcEEE
Q 006825 593 WHLSSKTCLK 602 (630)
Q Consensus 593 WDl~tg~~l~ 602 (630)
||+.+++...
T Consensus 269 ~d~~~g~~~~ 278 (388)
T 3pe7_A 269 ADPETLENRQ 278 (388)
T ss_dssp ECTTTCCEEE
T ss_pred EecCCCceEE
Confidence 9999987543
No 172
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.49 E-value=5.1e-12 Score=142.42 Aligned_cols=220 Identities=8% Similarity=-0.078 Sum_probs=145.4
Q ss_pred eEeecCCCccEecccCCC---C-ceeEEecCC-----ccCCEEEEEEcCCCCeEEeecCC-------C----------CC
Q 006825 351 VEEGNKDSFDLNNNGSSG---G-GMKSKKKGS-----WFKSIRTVASSVTGHKERRSSDE-------R----------DT 404 (630)
Q Consensus 351 laSgS~D~tvr~vWD~~t---G-~~~~~lk~g-----H~~~V~sVAfSpdG~~lasgS~D-------~----------dt 404 (630)
|+.++. .+.+ ||.+.. | ....++. . |...+..++|||||++|+.++.+ . ++
T Consensus 94 la~~~~-~~~~-l~~~~~~~~g~~~~~~l~-~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ 170 (662)
T 3azo_A 94 LVFTHF-GDQR-LYAFEPDAPGGAVPRPLT-PVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDG 170 (662)
T ss_dssp EEEEBT-TTCC-EEEECTTSTTCCCCEECS-CCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTS
T ss_pred EEEEEC-CCCe-EEEEcCCCCCCCCCEecc-CCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCC
Confidence 554443 2444 554443 2 5556666 4 77889999999999999988765 1 22
Q ss_pred ------cc---cc-CCcceEEEeecCCCe--EEEecCC--------cEEEEEeCC-CCcccceeeeeEecccCcCEEEEE
Q 006825 405 ------SS---EK-GGRRSSSATDDSQDV--SFHGQER--------VRVRQYGKS-CKDLTALYKCQEIQAHNGSIWSIK 463 (630)
Q Consensus 405 ------~s---~~-gh~~~Vsa~~~s~d~--l~Sgs~D--------g~VriWd~~-~~el~~~~~v~tL~gHt~~V~sVa 463 (630)
+. +. .+...+....+++++ ++..+.+ ..|++|++. ++.+.. ..+...+|...+..++
T Consensus 171 ~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~--~~~l~~~~~~~~~~~~ 248 (662)
T 3azo_A 171 SAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFAD--TRTLLGGPEEAIAQAE 248 (662)
T ss_dssp TTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEE--EEEEEEETTBCEEEEE
T ss_pred CccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccc--cEEeCCCCCceEcceE
Confidence 22 33 455667778899998 5544433 589999997 442111 2233455688999999
Q ss_pred EccCCCEEEEEeCCC--cEEEEECcCCceeeeeecccccCcccc--------eEEEEECCCCCEEEEeeCCCeeeeeccc
Q 006825 464 FSLDGRYLASAGEDC--VIHVWQVVESERKGELLEKQEDGHLNM--------LLLANGSPEPTSLSPKHLDNHLEKKRRG 533 (630)
Q Consensus 464 FSpDG~~LASgS~Dg--tIrVWDl~tg~~~~~l~~~~~~gh~~~--------V~svafSpdg~~lasgs~Dg~I~i~~~~ 533 (630)
|+|||++++++..|+ .|.+||+.+++... +. ..+... +..++|+|++++++++.. +.+
T Consensus 249 ~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~-l~----~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~------ 316 (662)
T 3azo_A 249 WAPDGSLIVATDRTGWWNLHRVDPATGAATQ-LC----RREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAA------ 316 (662)
T ss_dssp ECTTSCEEEEECTTSSCEEEEECTTTCCEEE-SS----CCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSC------
T ss_pred ECCCCeEEEEECCCCCeEEEEEECCCCceee-cc----cccccccCccccccCceEeEeCCCEEEEEEEc-Ccc------
Confidence 999999999998898 55666665665432 21 222211 456889999999998877 776
Q ss_pred ccccccccccCccccccEEE--eCCCCceEEeccCCCCEEEE-EEcCC-CeEEEEECCCc--EEEEeCCCCcEEEEE
Q 006825 534 RSINRKSLSLDHMVVPETVF--ALSDKPICSFQGHLDDVLDL-SWSKS-QHLLSSSMDKT--VRLWHLSSKTCLKIF 604 (630)
Q Consensus 534 ~~~~~~s~s~d~~i~~~~Vw--dlsgk~l~tL~GHs~~V~sL-afSPd-~~LaSgS~Dgt--VrIWDl~tg~~l~t~ 604 (630)
.+| ++.+..+..+..|...|..+ ++.++ -++++++.+.. |.+||+.++++....
T Consensus 317 -----------------~l~~~d~~~~~~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~ 376 (662)
T 3azo_A 317 -----------------VLGILDPESGELVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRARTIG 376 (662)
T ss_dssp -----------------EEEEEETTTTEEEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEEEE
T ss_pred -----------------EEEEEECCCCcEEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEEee
Confidence 566 44555678888898888888 67666 44556666654 555577777755443
No 173
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.49 E-value=4.7e-12 Score=130.16 Aligned_cols=255 Identities=7% Similarity=-0.011 Sum_probs=153.3
Q ss_pred eEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCC-----ccEecccCCCCceeEEecCCccCCEEEEE
Q 006825 316 KKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDS-----FDLNNNGSSGGGMKSKKKGSWFKSIRTVA 387 (630)
Q Consensus 316 ~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~-----tvr~vWD~~tG~~~~~lk~gH~~~V~sVA 387 (630)
..++++.+|+...+ ..+..++|+| .|+..+.+. .+. +|++.+|+...... .+. +..++
T Consensus 45 l~~~d~~~~~~~~l----------~~~~~~~~SpDg~~la~~~~~~~~~~~~l~-~~~~~~g~~~~l~~-~~~--~~~~~ 110 (347)
T 2gop_A 45 IVIENLKNNARRFI----------ENATMPRISPDGKKIAFMRANEEKKVSEIW-VADLETLSSKKILE-AKN--IRSLE 110 (347)
T ss_dssp EEEEETTTCCEEEE----------ESCEEEEECTTSSEEEEEEEETTTTEEEEE-EEETTTTEEEEEEE-ESE--EEEEE
T ss_pred EEEEeCCCCceEEc----------ccCCCeEECCCCCEEEEEEeccCCCcceEE-EEECCCCceEEEEc-CCC--cccee
Confidence 45667777765422 4577889998 566665432 355 77888887665544 333 99999
Q ss_pred EcCCCCeEEeecCCCCCccccCCcceEEEeecCCCe-EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc
Q 006825 388 SSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDV-SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL 466 (630)
Q Consensus 388 fSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~-l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp 466 (630)
|+|||++|+..+.++.. ......+..+.+..++ -+.......|++|++.+++. ++.+.. . .+..++|+|
T Consensus 111 wspdg~~l~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~-----~~~l~~-~-~~~~~~~sp 180 (347)
T 2gop_A 111 WNEDSRKLLIVGFKRRE---DEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEV-----IEEFEK-P-RFSSGIWHR 180 (347)
T ss_dssp ECTTSSEEEEEEECCCC------------CCCC---------CEEEEEEEETTTTEE-----EEEEEE-E-TTCEEEEET
T ss_pred ECCCCCEEEEEEccCCC---cCCcEEEcccceeecCcccccCccceEEEEECCCCeE-----EeeecC-C-CcccccCCC
Confidence 99999998887644200 0001111222222222 11223356799999987653 133333 3 788999999
Q ss_pred CCCEEEEEeCCC-------cEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccccccccc
Q 006825 467 DGRYLASAGEDC-------VIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRK 539 (630)
Q Consensus 467 DG~~LASgS~Dg-------tIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~ 539 (630)
|| +++++..+. ..+||.+.+++ ...+. .+ ..+..+ +|+|+.|+..+.+..-..
T Consensus 181 dg-~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~l~-----~~-~~~~~~--spdg~~l~~~~~~~~~~~---------- 240 (347)
T 2gop_A 181 DK-IVVNVPHREIIPQYFKFWDIYIWEDGK-EEKMF-----EK-VSFYAV--DSDGERILLYGKPEKKYM---------- 240 (347)
T ss_dssp TE-EEEEEECCCSSCCSSCCEEEEEEETTE-EEEEE-----EE-ESEEEE--EECSSCEEEEECCSSSCC----------
T ss_pred Ce-EEEEEecccccccccccccEEEeCCCc-eEEec-----cC-cceeeE--CCCCCEEEEEEccccCCc----------
Confidence 99 888887653 45666655443 33331 22 344444 899998887765431000
Q ss_pred ccccCccccccEEEeCCCCceEEeccCCCCEEE-EEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEecCCceEEEE-cCC
Q 006825 540 SLSLDHMVVPETVFALSDKPICSFQGHLDDVLD-LSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYDISLV-DRL 617 (630)
Q Consensus 540 s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~s-LafSPd~~LaSgS~DgtVrIWDl~tg~~l~t~~H~~~V~sVa-s~~ 617 (630)
.....+ .+|+ +++....+.+|...|.. +.|+ ++++++++.|+.++|| +.+++....+.+...|.+++ ++
T Consensus 241 --~~~~~l---~~~d-~~~~~~l~~~~~~~~~~~~~~s-dg~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~s~- 311 (347)
T 2gop_A 241 --SEHNKL---YIYD-GKEVMGILDEVDRGVGQAKIKD-GKVYFTLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDVDE- 311 (347)
T ss_dssp --CSSCEE---EEEC-SSCEEESSTTCCSEEEEEEEET-TEEEEEEEETTEEEEE-EESSSEEEEECSSSEEEEEEESS-
T ss_pred --cccceE---EEEC-CCceEeccccCCcccCCccEEc-CcEEEEEecCCcEEEE-EcCCceEEEecCCCeEEeeeeeC-
Confidence 000000 4555 55554445567778886 9999 7878889999999999 88777665555777888888 66
Q ss_pred CcEEEE
Q 006825 618 MLRFAY 623 (630)
Q Consensus 618 ~~~lAs 623 (630)
...++.
T Consensus 312 ~~~~~~ 317 (347)
T 2gop_A 312 IVVYLK 317 (347)
T ss_dssp SEEEEE
T ss_pred cEEEEE
Confidence 433333
No 174
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.46 E-value=3.8e-12 Score=132.33 Aligned_cols=232 Identities=7% Similarity=-0.122 Sum_probs=143.0
Q ss_pred EEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecC
Q 006825 344 ELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDS 420 (630)
Q Consensus 344 ~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s 420 (630)
.+.|+| .|+..+.+..+. +||+.+|+...... .+.. ++++|++++..+.+.... .......++
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~-~~d~~~~~~~~~~~-~~~~------~~~~g~~l~~~~~~~~~~------~~~~~~~~s 150 (396)
T 3c5m_A 85 GGFISTDERAFFYVKNELNLM-KVDLETLEEQVIYT-VDEE------WKGYGTWVANSDCTKLVG------IEILKRDWQ 150 (396)
T ss_dssp TCEECTTSSEEEEEETTTEEE-EEETTTCCEEEEEE-CCTT------EEEEEEEEECTTSSEEEE------EEEEGGGCC
T ss_pred cceECCCCCEEEEEEcCCcEE-EEECCCCCcEEEEe-cccc------cCCCCCEEEeccCCcccc------ccccccccC
Confidence 356777 577888888899 99999988766555 3433 566666666443321000 000112344
Q ss_pred CCe--EEE-----ecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc-CCCEEEEEeCC------CcEEEEECc
Q 006825 421 QDV--SFH-----GQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASAGED------CVIHVWQVV 486 (630)
Q Consensus 421 ~d~--l~S-----gs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp-DG~~LASgS~D------gtIrVWDl~ 486 (630)
+++ ++. ...+..|++|++.+++. ..+..+...+..+.|+| +|++|+..+.+ ..|.+|++.
T Consensus 151 pdg~~~~~~~~~~~~~~~~l~~~d~~~g~~------~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~ 224 (396)
T 3c5m_A 151 PLTSWEKFAEFYHTNPTCRLIKVDIETGEL------EVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNED 224 (396)
T ss_dssp CCCSHHHHHHHHHTCCCEEEEEEETTTCCE------EEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETT
T ss_pred CCCcceeeeeeccCCCcceEEEEECCCCcE------EeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECC
Confidence 444 221 14677899999987653 23345778899999999 89877776654 358888886
Q ss_pred CCceeeeeecccccCc-ccceEEEEECCCCCEEEEeeCC-----CeeeeecccccccccccccCccccccEEEeCCCCce
Q 006825 487 ESERKGELLEKQEDGH-LNMLLLANGSPEPTSLSPKHLD-----NHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPI 560 (630)
Q Consensus 487 tg~~~~~l~~~~~~gh-~~~V~svafSpdg~~lasgs~D-----g~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l 560 (630)
.+.. ..+ .... ...+..++|+|+|++|+..+.+ +.| .+|++.....
T Consensus 225 ~~~~-~~l----~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l-----------------------~~~d~~~g~~ 276 (396)
T 3c5m_A 225 GSNV-RKI----KEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVI-----------------------YKANPETLEN 276 (396)
T ss_dssp SCCC-EES----SCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEE-----------------------EEECTTTCCE
T ss_pred CCce-eEe----eccCCCccccceEECCCCCEEEEEecCCCCccceE-----------------------EEEECCCCCe
Confidence 5542 232 1211 2357789999999987776543 224 6777733222
Q ss_pred EEeccCCCCEEEEEEcC-C-CeEEEEE----------------CCCcEEEEeCCCCcEEEEEecCCc-----------eE
Q 006825 561 CSFQGHLDDVLDLSWSK-S-QHLLSSS----------------MDKTVRLWHLSSKTCLKIFSHSDY-----------DI 611 (630)
Q Consensus 561 ~tL~GHs~~V~sLafSP-d-~~LaSgS----------------~DgtVrIWDl~tg~~l~t~~H~~~-----------V~ 611 (630)
..+.... .+. +.|+| + ++|+.++ .+..|++||+.+++......|... +.
T Consensus 277 ~~l~~~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 354 (396)
T 3c5m_A 277 EEVMVMP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHP 354 (396)
T ss_dssp EEEEECC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCC
T ss_pred EEeeeCC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCC
Confidence 2222111 133 89999 8 7777655 357899999998875443335441 44
Q ss_pred EEE-cCCCcEEEEec
Q 006825 612 SLV-DRLMLRFAYGA 625 (630)
Q Consensus 612 sVa-s~~~~~lAsgs 625 (630)
.++ ++++..+++.+
T Consensus 355 ~~~~s~dg~~l~~~s 369 (396)
T 3c5m_A 355 HPSFTPNDDGVLFTS 369 (396)
T ss_dssp CCEECTTSSEEEEEE
T ss_pred CceEccCCCeEEEEe
Confidence 455 77777766654
No 175
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.43 E-value=7e-11 Score=122.57 Aligned_cols=221 Identities=13% Similarity=-0.004 Sum_probs=151.5
Q ss_pred eEEEEcCCCceEeeecceee-ecCccceeEEEeec---ceEeecCCCccEecccCCCCc-eeEEec--------CCccCC
Q 006825 316 KKVKEVGTGRQLTIEEFEMC-VGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGG-MKSKKK--------GSWFKS 382 (630)
Q Consensus 316 ~~l~dv~TG~~lt~eef~~l-~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~-~~~~lk--------~gH~~~ 382 (630)
..+++..+|+.+ ..+ .++-.....|++.+ .+++.+.+..|+ +||..... .+.++. .++...
T Consensus 71 i~~~d~~~g~~~-----~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~-~~~~~g~~~~~~~~~~~~~~g~~~~~~~~ 144 (329)
T 3fvz_A 71 ILVIDPNNAEIL-----QSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVF-KLDPHSKEGPLLILGRSMQPGSDQNHFCQ 144 (329)
T ss_dssp EEEECTTTCCEE-----EEECTTTCSSEEEEEECTTSCEEEEETTTTEEE-EECTTCSSCCSEEESBTTBCCCSTTCCSS
T ss_pred EEEEECCCCeEE-----eccCCCccCCceEEEECCCCCEEEEECCCCEEE-EEeCCCCeEEEEEecccCCCCCCccccCC
Confidence 446666667665 122 24555678899987 577788889999 99975442 555552 266778
Q ss_pred EEEEEEcC-CCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEec-CCcEEEEEeCCCCcccceeeeeEec-------
Q 006825 383 IRTVASSV-TGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQ-ERVRVRQYGKSCKDLTALYKCQEIQ------- 453 (630)
Q Consensus 383 V~sVAfSp-dG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs-~Dg~VriWd~~~~el~~~~~v~tL~------- 453 (630)
...|||+| +|.++++ .+ .+.+|++|+.... .+..+.
T Consensus 145 P~~ia~~~~~g~lyv~-----------------------------d~~~~~~I~~~~~~g~------~~~~~~~~g~~~~ 189 (329)
T 3fvz_A 145 PTDVAVEPSTGAVFVS-----------------------------DGYCNSRIVQFSPSGK------FVTQWGEESSGSS 189 (329)
T ss_dssp EEEEEECTTTCCEEEE-----------------------------ECSSCCEEEEECTTSC------EEEEECEECCSSS
T ss_pred CcEEEEeCCCCeEEEE-----------------------------eCCCCCeEEEEcCCCC------EEEEeccCCCCCC
Confidence 88999998 6765543 22 3567888885432 123332
Q ss_pred ---ccCcCEEEEEEccC-CCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeee
Q 006825 454 ---AHNGSIWSIKFSLD-GRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529 (630)
Q Consensus 454 ---gHt~~V~sVaFSpD-G~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i 529 (630)
++......|+|+|+ |+++++...++.|++|+..+++.+..+. ...+...+..++++| +..++..+. +.+
T Consensus 190 ~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~---~~~~~~~~~~~~~~p-g~~~~~~g~---~~v 262 (329)
T 3fvz_A 190 PRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIK---HASFGRNVFAISYIP-GFLFAVNGK---PYF 262 (329)
T ss_dssp CCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEC---CTTTTTCEEEEEEET-TEEEEEECC---CCT
T ss_pred CCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEe---ccccCCCcceeeecC-CEEEEeCCC---EEe
Confidence 34455899999998 8888888899999999998888777652 234556788999999 444443221 100
Q ss_pred ecccccccccccccCccccccEEEeC-CCCceEEe---ccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCC
Q 006825 530 KRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSF---QGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSS 597 (630)
Q Consensus 530 ~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL---~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~t 597 (630)
-. .....+ .+|+. +++.+.++ .+|...+..|+|+|+ .++++...+++|++|++..
T Consensus 263 ~~----------~~~~~v---~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 263 GD----------QEPVQG---FVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp TC----------SCCCCE---EEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred cc----------CCCcEE---EEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 00 001111 78886 78888887 477888999999999 7888889999999999753
No 176
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.40 E-value=4.7e-11 Score=136.88 Aligned_cols=203 Identities=10% Similarity=-0.056 Sum_probs=139.7
Q ss_pred eeEEEeec---ceEeecCCCc----------------cEecccCCCCcee--EEecC-CccCCEEEEEEcCCCCeEEeec
Q 006825 342 VQELMRRQ---NVEEGNKDSF----------------DLNNNGSSGGGMK--SKKKG-SWFKSIRTVASSVTGHKERRSS 399 (630)
Q Consensus 342 V~~Lafs~---~laSgS~D~t----------------vr~vWD~~tG~~~--~~lk~-gH~~~V~sVAfSpdG~~lasgS 399 (630)
+..++|+| .|+.++.|.. |. +|++.++... ..... .|...+..++|||||++|+..+
T Consensus 173 ~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~ 251 (710)
T 2xdw_A 173 FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLY-YHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSI 251 (710)
T ss_dssp SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEE-EEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEE
T ss_pred cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEE-EEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEE
Confidence 45677776 5666666665 88 9999888732 22221 3667788999999999887543
Q ss_pred CCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCC------CcccceeeeeEecccCcCEEEEEEccCCCEEEE
Q 006825 400 DERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSC------KDLTALYKCQEIQAHNGSIWSIKFSLDGRYLAS 473 (630)
Q Consensus 400 ~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~------~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LAS 473 (630)
... ...+..|++||+.+ +.. ..+.|..|...+.. .|+|+|+.|+.
T Consensus 252 ~~~------------------------~~~~~~l~~~d~~~~~~~~~~~~----~~~~l~~~~~~~~~-~~s~dg~~l~~ 302 (710)
T 2xdw_A 252 REG------------------------CDPVNRLWYCDLQQESNGITGIL----KWVKLIDNFEGEYD-YVTNEGTVFTF 302 (710)
T ss_dssp ECS------------------------SSSCCEEEEEEGGGSSSSSCSSC----CCEEEECSSSSCEE-EEEEETTEEEE
T ss_pred Ecc------------------------CCCccEEEEEECcccccccCCcc----ceEEeeCCCCcEEE-EEeccCCEEEE
Confidence 210 00156799999865 321 24556777777765 48899998777
Q ss_pred EeCCC----cEEEEECcCCce--eeeeecccccCcc-cceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCcc
Q 006825 474 AGEDC----VIHVWQVVESER--KGELLEKQEDGHL-NMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHM 546 (630)
Q Consensus 474 gS~Dg----tIrVWDl~tg~~--~~~l~~~~~~gh~-~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~ 546 (630)
.+.++ .|.+||+.++.. ...++ ..+. ..+..++|++++.++++...++..++
T Consensus 303 ~s~~~~~~~~l~~~d~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l----------------- 361 (710)
T 2xdw_A 303 KTNRHSPNYRLINIDFTDPEESKWKVLV----PEHEKDVLEWVACVRSNFLVLCYLHDVKNTL----------------- 361 (710)
T ss_dssp EECTTCTTCEEEEEETTSCCGGGCEEEE----CCCSSCEEEEEEEETTTEEEEEEEETTEEEE-----------------
T ss_pred EECCCCCCCEEEEEeCCCCCcccceecc----CCCCCCeEEEEEEEcCCEEEEEEEECCEEEE-----------------
Confidence 66533 599999987642 23331 2222 35778888888888888888876532
Q ss_pred ccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEE-EEE---CCCcEEEEeCCCCc
Q 006825 547 VVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLL-SSS---MDKTVRLWHLSSKT 599 (630)
Q Consensus 547 i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~La-SgS---~DgtVrIWDl~tg~ 599 (630)
.+|++ +|+.+..+..|...|..++++|+ ..|+ +.+ ..++|.+||+.+++
T Consensus 362 ----~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 362 ----QLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp ----EEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred ----EEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 56677 77888888888888999999998 5444 333 35799999999877
No 177
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.39 E-value=9e-11 Score=134.57 Aligned_cols=241 Identities=11% Similarity=0.008 Sum_probs=157.8
Q ss_pred ecCccceeEEEeec---ceEeecCC-----CccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccc
Q 006825 336 VGHSPIVQELMRRQ---NVEEGNKD-----SFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSE 407 (630)
Q Consensus 336 ~GHs~~V~~Lafs~---~laSgS~D-----~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~ 407 (630)
.+|...+..++|+| .||.++.+ .+++ +||+.+|+.+.... .+.+ +..++|+|||+.|+.++.+......
T Consensus 121 ~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~-v~d~~tg~~~~~~~-~~~~-~~~~~wspDg~~l~~~~~~~~~~~~ 197 (710)
T 2xdw_A 121 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIK-FMKVDGAKELPDVL-ERVK-FSCMAWTHDGKGMFYNAYPQQDGKS 197 (710)
T ss_dssp TTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEE-EEETTTTEEEEEEE-EEEC-SCCEEECTTSSEEEEEECCCCSSCC
T ss_pred cCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEE-EEECCCCCCCcccc-cCcc-cceEEEEeCCCEEEEEEECCccccc
Confidence 35666788899999 45544332 3889 99999999876433 3332 6679999999999887766421100
Q ss_pred cCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeC-----CCcEEE
Q 006825 408 KGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE-----DCVIHV 482 (630)
Q Consensus 408 ~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~-----DgtIrV 482 (630)
.+. .-.......|++|++.+++... .++.+...|...+..+.|+|||++|+..+. +..|.+
T Consensus 198 ~~~-------------~~~~~~~~~v~~~~l~t~~~~~-~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~ 263 (710)
T 2xdw_A 198 DGT-------------ETSTNLHQKLYYHVLGTDQSED-ILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWY 263 (710)
T ss_dssp SSS-------------CCCCCCCCEEEEEETTSCGGGC-EEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEE
T ss_pred ccc-------------ccccCCCCEEEEEECCCCcccc-eEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEE
Confidence 000 0001234579999997764211 122233446777899999999999988765 678999
Q ss_pred EECcC------Cc-eeeeeecccccCcccceEEEEECCCCCEEEEeeCCC----eeeeecccccccccccccCccccccE
Q 006825 483 WQVVE------SE-RKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN----HLEKKRRGRSINRKSLSLDHMVVPET 551 (630)
Q Consensus 483 WDl~t------g~-~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg----~I~i~~~~~~~~~~s~s~d~~i~~~~ 551 (630)
||+.+ +. ....+ ..+...+.. .|+|+|..|+..+..+ .| .
T Consensus 264 ~d~~~~~~~~~~~~~~~~l-----~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l-----------------------~ 314 (710)
T 2xdw_A 264 CDLQQESNGITGILKWVKL-----IDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRL-----------------------I 314 (710)
T ss_dssp EEGGGSSSSSCSSCCCEEE-----ECSSSSCEE-EEEEETTEEEEEECTTCTTCEE-----------------------E
T ss_pred EECcccccccCCccceEEe-----eCCCCcEEE-EEeccCCEEEEEECCCCCCCEE-----------------------E
Confidence 99986 43 23333 233334433 4778888777665432 23 5
Q ss_pred EEeCC-CC--ceEEeccCCC--CEEEEEEcCC-CeEEEEECCCc--EEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcEE
Q 006825 552 VFALS-DK--PICSFQGHLD--DVLDLSWSKS-QHLLSSSMDKT--VRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLRF 621 (630)
Q Consensus 552 Vwdls-gk--~l~tL~GHs~--~V~sLafSPd-~~LaSgS~Dgt--VrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~l 621 (630)
+|++. ++ ....+..|.. .|..++|+++ .++++...|+. |++|++.+|+.++.+. +...|..+. ++++..+
T Consensus 315 ~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l 394 (710)
T 2xdw_A 315 NIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEI 394 (710)
T ss_dssp EEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEE
T ss_pred EEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEE
Confidence 56663 32 2456666655 6888999976 77788888885 5667777888888887 878888888 6665444
Q ss_pred E
Q 006825 622 A 622 (630)
Q Consensus 622 A 622 (630)
+
T Consensus 395 ~ 395 (710)
T 2xdw_A 395 F 395 (710)
T ss_dssp E
T ss_pred E
Confidence 4
No 178
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.38 E-value=1e-10 Score=118.40 Aligned_cols=223 Identities=9% Similarity=-0.077 Sum_probs=150.1
Q ss_pred eeeecCccceeEEEeec----ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCcccc
Q 006825 333 EMCVGHSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEK 408 (630)
Q Consensus 333 ~~l~GHs~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~ 408 (630)
+.+..+......++|.| .++++..++.+. .||..++ ...+. .+...+.+++++++|+++++
T Consensus 21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~-~~~~~~~--~~~~~-~~~~~~~~l~~~~dg~l~v~----------- 85 (296)
T 3e5z_A 21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTW-AWSDDGQ--LSPEM-HPSHHQNGHCLNKQGHLIAC----------- 85 (296)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEE-EEETTSC--EEEEE-SSCSSEEEEEECTTCCEEEE-----------
T ss_pred EEEecCCccccCCeEeCCCCEEEEEeCCCCEEE-EEECCCC--eEEEE-CCCCCcceeeECCCCcEEEE-----------
Confidence 45555666778888887 378888899999 9999887 55666 67788999999999986643
Q ss_pred CCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEeccc-CcCEEEEEEccCCCEEEEEeC-----------
Q 006825 409 GGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAH-NGSIWSIKFSLDGRYLASAGE----------- 476 (630)
Q Consensus 409 gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gH-t~~V~sVaFSpDG~~LASgS~----------- 476 (630)
...++.|.+|+..++++..+. ....+. ...+..++|+|+|++++|.+.
T Consensus 86 ------------------~~~~~~i~~~d~~~g~~~~~~--~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~ 145 (296)
T 3e5z_A 86 ------------------SHGLRRLERQREPGGEWESIA--DSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYG 145 (296)
T ss_dssp ------------------ETTTTEEEEECSTTCCEEEEE--CEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSC
T ss_pred ------------------ecCCCeEEEEcCCCCcEEEEe--eccCCCCCCCCCCEEECCCCCEEEECCcccccccccccc
Confidence 233457899998666532111 111111 235678999999999998432
Q ss_pred ------CCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCcccccc
Q 006825 477 ------DCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPE 550 (630)
Q Consensus 477 ------DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~ 550 (630)
.+.|..++.. +. ...+ ..+......++|+|+++++++...++.|
T Consensus 146 ~~~~~~~~~l~~~~~~-g~-~~~~-----~~~~~~~~gi~~s~dg~~lv~~~~~~~i----------------------- 195 (296)
T 3e5z_A 146 GEMELPGRWVFRLAPD-GT-LSAP-----IRDRVKPNGLAFLPSGNLLVSDTGDNAT----------------------- 195 (296)
T ss_dssp CCCCSSSCEEEEECTT-SC-EEEE-----ECCCSSEEEEEECTTSCEEEEETTTTEE-----------------------
T ss_pred ccccCCCcEEEEECCC-CC-EEEe-----ecCCCCCccEEECCCCCEEEEeCCCCeE-----------------------
Confidence 2344444443 33 2222 3445567889999999988777677777
Q ss_pred EEEeC--CCCc---eEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE--cCCCcEE
Q 006825 551 TVFAL--SDKP---ICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV--DRLMLRF 621 (630)
Q Consensus 551 ~Vwdl--sgk~---l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa--s~~~~~l 621 (630)
.+|++ .++. ...+..+...+..++|.++ .++++. ++.|.+||.. ++.+..+. +.. +++++ .+++..|
T Consensus 196 ~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L 271 (296)
T 3e5z_A 196 HRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTL 271 (296)
T ss_dssp EEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEE
T ss_pred EEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEE
Confidence 45554 2332 2233335556778999999 555555 8899999986 88888888 666 88887 4665544
Q ss_pred EEe
Q 006825 622 AYG 624 (630)
Q Consensus 622 Asg 624 (630)
..+
T Consensus 272 ~v~ 274 (296)
T 3e5z_A 272 YMT 274 (296)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 179
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.37 E-value=5.9e-10 Score=114.17 Aligned_cols=226 Identities=9% Similarity=-0.075 Sum_probs=148.6
Q ss_pred eeeecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccC
Q 006825 333 EMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKG 409 (630)
Q Consensus 333 ~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~g 409 (630)
..+.++...+..++|.+ .++++..++.+. +||..+++...... .+...+.+++++++|+++++...+.
T Consensus 38 ~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~-~~d~~~~~~~~~~~-~~~~~~~~i~~~~dg~l~v~~~~~~------- 108 (333)
T 2dg1_A 38 LEISKKGLQLEGLNFDRQGQLFLLDVFEGNIF-KINPETKEIKRPFV-SHKANPAAIKIHKDGRLFVCYLGDF------- 108 (333)
T ss_dssp EEEESSCCCEEEEEECTTSCEEEEETTTCEEE-EECTTTCCEEEEEE-CSSSSEEEEEECTTSCEEEEECTTS-------
T ss_pred EEEeccCccccCcEECCCCCEEEEECCCCEEE-EEeCCCCcEEEEee-CCCCCcceEEECCCCcEEEEeCCCC-------
Confidence 34455555667777876 356778889999 99999888766554 5678899999999998765432110
Q ss_pred CcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEec--ccCcCEEEEEEccCCCEEEEEeC------CCcEE
Q 006825 410 GRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQ--AHNGSIWSIKFSLDGRYLASAGE------DCVIH 481 (630)
Q Consensus 410 h~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~--gHt~~V~sVaFSpDG~~LASgS~------DgtIr 481 (630)
...+.|.+|+..++.+.. .+. .+...+..++|+|+|+++++... .+.|.
T Consensus 109 ------------------~~~~~i~~~d~~~~~~~~-----~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~ 165 (333)
T 2dg1_A 109 ------------------KSTGGIFAATENGDNLQD-----IIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVY 165 (333)
T ss_dssp ------------------SSCCEEEEECTTSCSCEE-----EECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEE
T ss_pred ------------------CCCceEEEEeCCCCEEEE-----EEccCccCCcccceEECCCCCEEEEeccccccCCCceEE
Confidence 012468899987765321 121 34567999999999998887764 24455
Q ss_pred EEECcCCceeeeeecccccCcccceEEEEECCCCCEE-EEeeCCCeeeeecccccccccccccCccccccEEEeC--CCC
Q 006825 482 VWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSL-SPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL--SDK 558 (630)
Q Consensus 482 VWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~l-asgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl--sgk 558 (630)
.|+..+++.. .+ ......+..++|+|+++.+ ++...++.|. +|++ .++
T Consensus 166 ~~~~~~~~~~-~~-----~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~-----------------------~~d~~~~g~ 216 (333)
T 2dg1_A 166 YVSPDFRTVT-PI-----IQNISVANGIALSTDEKVLWVTETTANRLH-----------------------RIALEDDGV 216 (333)
T ss_dssp EECTTSCCEE-EE-----EEEESSEEEEEECTTSSEEEEEEGGGTEEE-----------------------EEEECTTSS
T ss_pred EEeCCCCEEE-Ee-----ecCCCcccceEECCCCCEEEEEeCCCCeEE-----------------------EEEecCCCc
Confidence 5555444332 22 1223456789999999855 4444566773 4443 222
Q ss_pred ceE--------EeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCC------ceEEEE-cCCCcEE
Q 006825 559 PIC--------SFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSD------YDISLV-DRLMLRF 621 (630)
Q Consensus 559 ~l~--------tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~------~V~sVa-s~~~~~l 621 (630)
.+. .+.++ ..+..+++.++ .++++...++.|.+||. .++.+..+. +.. .+.+++ .+++..|
T Consensus 217 ~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L 294 (333)
T 2dg1_A 217 TIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQL 294 (333)
T ss_dssp SEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEE
T ss_pred CcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEE
Confidence 221 22333 46788999999 77777778899999998 577788776 432 578888 6665443
No 180
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.37 E-value=1.2e-10 Score=119.02 Aligned_cols=211 Identities=9% Similarity=-0.036 Sum_probs=159.0
Q ss_pred ceEeecCCCccEecccCCCCceeEEecCCcc-CCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEec
Q 006825 350 NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWF-KSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQ 428 (630)
Q Consensus 350 ~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~-~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs 428 (630)
.|++++.|+.+. +||.++|+.+.++. .+. ..+.+++++|+|+++++
T Consensus 7 ~lv~~~~~~~v~-~~d~~tG~~~w~~~-~~~~~~~~~~~~~pdG~ilvs------------------------------- 53 (276)
T 3no2_A 7 LLVGGSGWNKIA-IINKDTKEIVWEYP-LEKGWECNSVAATKAGEILFS------------------------------- 53 (276)
T ss_dssp EEEECTTCSEEE-EEETTTTEEEEEEE-CCTTCCCCEEEECTTSCEEEE-------------------------------
T ss_pred EEEeeCCCCEEE-EEECCCCeEEEEeC-CCccCCCcCeEECCCCCEEEe-------------------------------
Confidence 478999999999 99999999999998 444 57889999999987762
Q ss_pred CCcEEEEEeCCCCcccceeeeeEeccc-CcCEEEEEEccCCCEEEEEeC-CCcEEEEECcCCceeeeeecc-cccCcccc
Q 006825 429 ERVRVRQYGKSCKDLTALYKCQEIQAH-NGSIWSIKFSLDGRYLASAGE-DCVIHVWQVVESERKGELLEK-QEDGHLNM 505 (630)
Q Consensus 429 ~Dg~VriWd~~~~el~~~~~v~tL~gH-t~~V~sVaFSpDG~~LASgS~-DgtIrVWDl~tg~~~~~l~~~-~~~gh~~~ 505 (630)
.+..|+.||. +++ .+..+..+ ...+.++.+.++|++|++.+. ++.|..+|. +++.+.++... ...++...
T Consensus 54 ~~~~V~~~d~-~G~-----~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~ 126 (276)
T 3no2_A 54 YSKGAKMITR-DGR-----ELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQ 126 (276)
T ss_dssp CBSEEEEECT-TSC-----EEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGS
T ss_pred CCCCEEEECC-CCC-----EEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCccccc
Confidence 1334777877 343 24445544 346889999999999999887 777777775 67766664311 11123334
Q ss_pred eEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEE
Q 006825 506 LLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSS 584 (630)
Q Consensus 506 V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSg 584 (630)
...+++.++|.++++...++.| ..|+..|+.+.++..+ ..+..+.+.++ ++|+++
T Consensus 127 ~~~v~~~~~G~~lv~~~~~~~v-----------------------~~~d~~G~~~w~~~~~-~~~~~~~~~~~g~~~v~~ 182 (276)
T 3no2_A 127 FRQINKNKKGNYLVPLFATSEV-----------------------REIAPNGQLLNSVKLS-GTPFSSAFLDNGDCLVAC 182 (276)
T ss_dssp CSCCEECTTSCEEEEETTTTEE-----------------------EEECTTSCEEEEEECS-SCCCEEEECTTSCEEEEC
T ss_pred ccCceECCCCCEEEEecCCCEE-----------------------EEECCCCCEEEEEECC-CCccceeEcCCCCEEEEe
Confidence 5566788999999999888888 7788788888888765 34567788888 888888
Q ss_pred ECCCcEEEEeCCCCcEEEEEe-cC------CceEEEE-cCCCcEEEEe
Q 006825 585 SMDKTVRLWHLSSKTCLKIFS-HS------DYDISLV-DRLMLRFAYG 624 (630)
Q Consensus 585 S~DgtVrIWDl~tg~~l~t~~-H~------~~V~sVa-s~~~~~lAsg 624 (630)
+.++.|..||..+|+.+..+. +. ..+..++ .+++..++..
T Consensus 183 ~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 183 GDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp BTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred CCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence 888899999999999999996 32 2367777 6677777665
No 181
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.35 E-value=7.5e-12 Score=130.12 Aligned_cols=241 Identities=6% Similarity=-0.107 Sum_probs=147.4
Q ss_pred EEEcCCCceEeeecceeeecC-----ccceeEEEeec---ceEeecC-C--CccEecccCCCCceeEEecCCccCCEEEE
Q 006825 318 VKEVGTGRQLTIEEFEMCVGH-----SPIVQELMRRQ---NVEEGNK-D--SFDLNNNGSSGGGMKSKKKGSWFKSIRTV 386 (630)
Q Consensus 318 l~dv~TG~~lt~eef~~l~GH-----s~~V~~Lafs~---~laSgS~-D--~tvr~vWD~~tG~~~~~lk~gH~~~V~sV 386 (630)
..+..||+.+ .++..+ ...+..++|+| .|+..+. + ..+. +||+.+|+...... ++...+..+
T Consensus 14 ~~d~~~g~~~-----~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~-~~d~~~~~~~~l~~-~~~~~~~~~ 86 (396)
T 3c5m_A 14 FVDSDTQVKV-----TRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYY-LLNLETQQAVQLTE-GKGDNTFGG 86 (396)
T ss_dssp EECTTTCCEE-----EECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEE-EEETTTTEEEECCC-SSCBCTTTC
T ss_pred eecCCCCcce-----EEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEE-EEECCCCcEEEeec-CCCCccccc
Confidence 5566788766 444433 33478888998 4554433 2 3566 77988887654433 444333347
Q ss_pred EEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEE-----
Q 006825 387 ASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWS----- 461 (630)
Q Consensus 387 AfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~s----- 461 (630)
+|+|||++|+..+. +..|++|+..+++.. ..+..+......
T Consensus 87 ~~spdg~~l~~~~~-----------------------------~~~l~~~d~~~~~~~-----~~~~~~~~~~~~g~~l~ 132 (396)
T 3c5m_A 87 FISTDERAFFYVKN-----------------------------ELNLMKVDLETLEEQ-----VIYTVDEEWKGYGTWVA 132 (396)
T ss_dssp EECTTSSEEEEEET-----------------------------TTEEEEEETTTCCEE-----EEEECCTTEEEEEEEEE
T ss_pred eECCCCCEEEEEEc-----------------------------CCcEEEEECCCCCcE-----EEEecccccCCCCCEEE
Confidence 89999998865432 235888888766431 222333332222
Q ss_pred --------------EEEccCCCEEEEE-----eCCCcEEEEECcCCceeeeeecccccCcccceEEEEECC-CCCEEEEe
Q 006825 462 --------------IKFSLDGRYLASA-----GEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSP-EPTSLSPK 521 (630)
Q Consensus 462 --------------VaFSpDG~~LASg-----S~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSp-dg~~lasg 521 (630)
++|+|++++++.+ ..+..|.+||+.+++.... ..+...+..+.|+| ++..|+..
T Consensus 133 ~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~------~~~~~~~~~~~~sp~dg~~l~~~ 206 (396)
T 3c5m_A 133 NSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVI------HQDTAWLGHPIYRPFDDSTVGFC 206 (396)
T ss_dssp CTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEE------EEESSCEEEEEEETTEEEEEEEE
T ss_pred eccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEee------ccCCcccccceECCCCCCEEEEE
Confidence 4567888877654 4667899999988765433 23456688899999 78877766
Q ss_pred eCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCC--CCEEEEEEcCC-CeEEEEECC-----CcEEEE
Q 006825 522 HLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHL--DDVLDLSWSKS-QHLLSSSMD-----KTVRLW 593 (630)
Q Consensus 522 s~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs--~~V~sLafSPd-~~LaSgS~D-----gtVrIW 593 (630)
+.+..- .....+ .+|++.+..+..+..+. ..+..++|+|+ ++|+.++.+ +.|++|
T Consensus 207 ~~~~~~--------------~~~~~l---~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~ 269 (396)
T 3c5m_A 207 HEGPHD--------------LVDARM---WLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKA 269 (396)
T ss_dssp ECSCSS--------------SCSCCC---EEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEE
T ss_pred ecCCCC--------------CCCceE---EEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEE
Confidence 543210 000001 56666555555555443 35888999999 777777654 459999
Q ss_pred eCCCCcEEEEEecCCceEEEE-cC-CCcEEEEe
Q 006825 594 HLSSKTCLKIFSHSDYDISLV-DR-LMLRFAYG 624 (630)
Q Consensus 594 Dl~tg~~l~t~~H~~~V~sVa-s~-~~~~lAsg 624 (630)
|+.+++......... .. ++ ++ ++..++++
T Consensus 270 d~~~g~~~~l~~~~~-~~-~~~s~~dg~~l~~~ 300 (396)
T 3c5m_A 270 NPETLENEEVMVMPP-CS-HLMSNFDGSLMVGD 300 (396)
T ss_dssp CTTTCCEEEEEECCS-EE-EEEECSSSSEEEEE
T ss_pred ECCCCCeEEeeeCCC-CC-CCccCCCCceEEEe
Confidence 999987655433222 22 44 66 77777664
No 182
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.33 E-value=3.2e-11 Score=138.07 Aligned_cols=245 Identities=11% Similarity=-0.021 Sum_probs=156.5
Q ss_pred ceeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCc
Q 006825 260 SMSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHS 339 (630)
Q Consensus 260 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs 339 (630)
++++||||++|+..++ ..+.+...++|+++++|+.. ... .+.+.
T Consensus 125 ~~~~SPDG~~la~~~~---------~~G~~~~~i~v~dl~tg~~~-----------------------~~~---~~~~~- 168 (695)
T 2bkl_A 125 TWAVSWDGKKVAFAQK---------PNAADEAVLHVIDVDSGEWS-----------------------KVD---VIEGG- 168 (695)
T ss_dssp EEEECTTSSEEEEEEE---------ETTCSCCEEEEEETTTCCBC-----------------------SSC---CBSCC-
T ss_pred EEEECCCCCEEEEEEC---------CCCCceEEEEEEECCCCCCc-----------------------CCc---ccCcc-
Confidence 3689999999955542 23345566777777666431 000 00000
Q ss_pred cceeEEEeec---ceEeecCCCc-------------cEecccCCCCcee--EEec-CCccCCEEEEEEcCCCCeEEeecC
Q 006825 340 PIVQELMRRQ---NVEEGNKDSF-------------DLNNNGSSGGGMK--SKKK-GSWFKSIRTVASSVTGHKERRSSD 400 (630)
Q Consensus 340 ~~V~~Lafs~---~laSgS~D~t-------------vr~vWD~~tG~~~--~~lk-~gH~~~V~sVAfSpdG~~lasgS~ 400 (630)
....++|+| .|+.++.|.+ |+ +|++.++... ..+. .+|...+.+++|||||++|+..+.
T Consensus 169 -~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~-~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~ 246 (695)
T 2bkl_A 169 -KYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIR-YHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYIL 246 (695)
T ss_dssp -TTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEE-EEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEE
T ss_pred -cccceEEecCCCEEEEEEecCCCCCccccCCCCCEEE-EEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEe
Confidence 014567777 5777787776 88 9999988732 2222 156678999999999998875432
Q ss_pred CCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEe---CC
Q 006825 401 ERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG---ED 477 (630)
Q Consensus 401 D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS---~D 477 (630)
+. .....|++|+..+++ ...|..|...+....| ++|+++++.. .+
T Consensus 247 ~~-------------------------~~~~~l~~~~~~~~~------~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~ 294 (695)
T 2bkl_A 247 RG-------------------------WSENDVYWKRPGEKD------FRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPR 294 (695)
T ss_dssp ET-------------------------TTEEEEEEECTTCSS------CEEEEECSSCCEEEEE-ETTEEEEEECTTCTT
T ss_pred CC-------------------------CCceEEEEEcCCCCc------eEEeecCCCceEEEEe-cCCcEEEEECCCCCC
Confidence 21 023357777665443 3445667777777777 5666555544 35
Q ss_pred CcEEEEECcCCce--eeeeecccccCc-ccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEe
Q 006825 478 CVIHVWQVVESER--KGELLEKQEDGH-LNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFA 554 (630)
Q Consensus 478 gtIrVWDl~tg~~--~~~l~~~~~~gh-~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwd 554 (630)
+.|.+||+.++.. ...++ ..+ ...+..++++ ++.++++...++..++ .+++
T Consensus 295 ~~l~~~d~~~~~~~~~~~l~----~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l---------------------~~~~ 348 (695)
T 2bkl_A 295 QRVFEVDPAKPARASWKEIV----PEDSSASLLSVSIV-GGHLSLEYLKDATSEV---------------------RVAT 348 (695)
T ss_dssp CEEEEEBTTBCSGGGCEEEE----CCCSSCEEEEEEEE-TTEEEEEEEETTEEEE---------------------EEEE
T ss_pred CEEEEEeCCCCCccCCeEEe----cCCCCCeEEEEEEE-CCEEEEEEEECCEEEE---------------------EEEe
Confidence 8899999987653 23332 222 4457778887 6778888888887733 2334
Q ss_pred CCCCceEEeccC-CCCEEEEEEcCC-CeEE-EEE---CCCcEEEEeCCCCcE
Q 006825 555 LSDKPICSFQGH-LDDVLDLSWSKS-QHLL-SSS---MDKTVRLWHLSSKTC 600 (630)
Q Consensus 555 lsgk~l~tL~GH-s~~V~sLafSPd-~~La-SgS---~DgtVrIWDl~tg~~ 600 (630)
+.++.+..+..+ ...|..++|+|+ ..|+ +.+ ..++|++||+.+++.
T Consensus 349 ~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 349 LKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp TTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred CCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 456767777666 667888999998 5555 332 357899999998874
No 183
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.30 E-value=5.5e-10 Score=114.41 Aligned_cols=220 Identities=8% Similarity=-0.057 Sum_probs=149.1
Q ss_pred cceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEE
Q 006825 340 PIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSA 416 (630)
Q Consensus 340 ~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa 416 (630)
..|..|+|.+ .++..+.+++++ .| .++....+. ++...+.+++|+++|+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~-~~~~~~~~~~~~~~g~l~--------------------- 59 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQ-TI---TAEPWLEIS-KKGLQLEGLNFDRQGQLF--------------------- 59 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSC-EE---ECEEEEEEE-SSCCCEEEEEECTTSCEE---------------------
T ss_pred cccceeeecCCccceeEEeecccCc-cc---ccceeEEEe-ccCccccCcEECCCCCEE---------------------
Confidence 4467788887 456667888999 88 566777777 777788999999998754
Q ss_pred eecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCC----CcEEEEECcCCceee
Q 006825 417 TDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED----CVIHVWQVVESERKG 492 (630)
Q Consensus 417 ~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~D----gtIrVWDl~tg~~~~ 492 (630)
+++..++.|++|+..++++. ..+..+...|.+|+|+++|+++++...+ +.|.+||..++....
T Consensus 60 --------~~~~~~~~i~~~d~~~~~~~-----~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~ 126 (333)
T 2dg1_A 60 --------LLDVFEGNIFKINPETKEIK-----RPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQD 126 (333)
T ss_dssp --------EEETTTCEEEEECTTTCCEE-----EEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEE
T ss_pred --------EEECCCCEEEEEeCCCCcEE-----EEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEE
Confidence 34455678999998776532 2223567789999999999988887777 789999998766442
Q ss_pred eeecccccCcccceEEEEECCCCCEEEEeeCC------CeeeeecccccccccccccCccccccEEEeCCCCceEEeccC
Q 006825 493 ELLEKQEDGHLNMLLLANGSPEPTSLSPKHLD------NHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGH 566 (630)
Q Consensus 493 ~l~~~~~~gh~~~V~svafSpdg~~lasgs~D------g~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GH 566 (630)
.+. ...+...+..++++|++.++++...+ +.| ..++..+..+..+..+
T Consensus 127 ~~~---~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l-----------------------~~~~~~~~~~~~~~~~ 180 (333)
T 2dg1_A 127 IIE---DLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGV-----------------------YYVSPDFRTVTPIIQN 180 (333)
T ss_dssp EEC---SSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEE-----------------------EEECTTSCCEEEEEEE
T ss_pred EEc---cCccCCcccceEECCCCCEEEEeccccccCCCceE-----------------------EEEeCCCCEEEEeecC
Confidence 221 11234568899999999988876432 222 2333333334444344
Q ss_pred CCCEEEEEEcCC-CeE-EEEECCCcEEEEeCCC-CcEEEEE--------ecCCceEEEE-cCCCcEEEEe
Q 006825 567 LDDVLDLSWSKS-QHL-LSSSMDKTVRLWHLSS-KTCLKIF--------SHSDYDISLV-DRLMLRFAYG 624 (630)
Q Consensus 567 s~~V~sLafSPd-~~L-aSgS~DgtVrIWDl~t-g~~l~t~--------~H~~~V~sVa-s~~~~~lAsg 624 (630)
...+..++|+|+ ++| ++.+.++.|++||+.+ +..+..+ .....+..++ ++++..+++.
T Consensus 181 ~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~ 250 (333)
T 2dg1_A 181 ISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAM 250 (333)
T ss_dssp ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEE
T ss_pred CCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEE
Confidence 456889999999 645 5556789999999964 4433221 1113677777 6666655543
No 184
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.29 E-value=9.6e-10 Score=111.22 Aligned_cols=211 Identities=10% Similarity=-0.016 Sum_probs=140.1
Q ss_pred eecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEec---CCccCCEEEEEEcCCCCeEEe----ecCCCCC
Q 006825 335 CVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKK---GSWFKSIRTVASSVTGHKERR----SSDERDT 404 (630)
Q Consensus 335 l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk---~gH~~~V~sVAfSpdG~~las----gS~D~dt 404 (630)
+..+...+..|++.+ .+++...++.+. +||..+|+...... ......+..++++|+|+++++ |..+..
T Consensus 64 ~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~-~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~- 141 (296)
T 3e5z_A 64 EMHPSHHQNGHCLNKQGHLIACSHGLRRLE-RQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPE- 141 (296)
T ss_dssp EESSCSSEEEEEECTTCCEEEEETTTTEEE-EECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGG-
T ss_pred EECCCCCcceeeECCCCcEEEEecCCCeEE-EEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCcccccccc-
Confidence 334566788899987 455656678899 99998888654432 112345678999999998775 221100
Q ss_pred ccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 006825 405 SSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQ 484 (630)
Q Consensus 405 ~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWD 484 (630)
.+.. .......+.|..++.. ++ +..+..+......++|+|||++|++...++.|.+|+
T Consensus 142 ---~~~~------------~~~~~~~~~l~~~~~~-g~------~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~ 199 (296)
T 3e5z_A 142 ---EGYG------------GEMELPGRWVFRLAPD-GT------LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYC 199 (296)
T ss_dssp ---GSSC------------CCCCSSSCEEEEECTT-SC------EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEE
T ss_pred ---cccc------------ccccCCCcEEEEECCC-CC------EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEE
Confidence 0000 0000112356666654 32 234456777889999999999998888899999999
Q ss_pred Cc-CCce-e-eeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceE
Q 006825 485 VV-ESER-K-GELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPIC 561 (630)
Q Consensus 485 l~-tg~~-~-~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~ 561 (630)
+. ++.. . ..++ ..+...+..+++.++|.++++. ++.| .+|+..++.+.
T Consensus 200 ~~~~g~~~~~~~~~----~~~~~~p~~i~~d~~G~l~v~~--~~~v-----------------------~~~~~~g~~~~ 250 (296)
T 3e5z_A 200 LNARGETEYQGVHF----TVEPGKTDGLRVDAGGLIWASA--GDGV-----------------------HVLTPDGDELG 250 (296)
T ss_dssp ECSSSCEEEEEEEE----CCSSSCCCSEEEBTTSCEEEEE--TTEE-----------------------EEECTTSCEEE
T ss_pred ECCCCcCcCCCeEe----eCCCCCCCeEEECCCCCEEEEc--CCeE-----------------------EEECCCCCEEE
Confidence 97 4443 1 1111 2234456678999999987776 6667 78888888888
Q ss_pred EeccCCCCEEEEEE-cCC-CeEEEEECCCcEEEEeCCCCcE
Q 006825 562 SFQGHLDDVLDLSW-SKS-QHLLSSSMDKTVRLWHLSSKTC 600 (630)
Q Consensus 562 tL~GHs~~V~sLaf-SPd-~~LaSgS~DgtVrIWDl~tg~~ 600 (630)
.+..+.. +++++| .|+ +.|+.++.++ +.-+++.+.+.
T Consensus 251 ~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~~ 289 (296)
T 3e5z_A 251 RVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRGL 289 (296)
T ss_dssp EEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCCBC
T ss_pred EEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEcccccc
Confidence 8888887 999999 578 7888888764 33455655543
No 185
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.28 E-value=5.1e-10 Score=114.91 Aligned_cols=177 Identities=5% Similarity=-0.055 Sum_probs=116.6
Q ss_pred CccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecC-CcEEEEE
Q 006825 358 SFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQE-RVRVRQY 436 (630)
Q Consensus 358 ~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~-Dg~VriW 436 (630)
..+. +||+.+|+.+..+. . . .+..++|+||| ++.++..+... . ... ...|+++
T Consensus 152 ~~l~-~~d~~~~~~~~~l~-~-~-~~~~~~~spdg-~~~~~~~~~~~----------------~-----~~~~~~~l~~~ 205 (347)
T 2gop_A 152 TTFW-IFDTESEEVIEEFE-K-P-RFSSGIWHRDK-IVVNVPHREII----------------P-----QYFKFWDIYIW 205 (347)
T ss_dssp EEEE-EEETTTTEEEEEEE-E-E-TTCEEEEETTE-EEEEEECCCSS----------------C-----CSSCCEEEEEE
T ss_pred ceEE-EEECCCCeEEeeec-C-C-CcccccCCCCe-EEEEEeccccc----------------c-----cccccccEEEe
Confidence 4677 89999988756665 3 3 78899999999 66654332100 0 000 2346666
Q ss_pred eCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCC--------cEEEEECcCCceeeeeecccccCcccceEE
Q 006825 437 GKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDC--------VIHVWQVVESERKGELLEKQEDGHLNMLLL 508 (630)
Q Consensus 437 d~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~Dg--------tIrVWDl~tg~~~~~l~~~~~~gh~~~V~s 508 (630)
+ +++ ...+..+ ..+..+ +|||++|+.++.+. .|.+|| +++. ..+ ..++...+..
T Consensus 206 d--~~~------~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~-~~l----~~~~~~~~~~ 267 (347)
T 2gop_A 206 E--DGK------EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEV-MGI----LDEVDRGVGQ 267 (347)
T ss_dssp E--TTE------EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCE-EES----STTCCSEEEE
T ss_pred C--CCc------eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCce-Eec----cccCCcccCC
Confidence 6 332 2334445 556655 99999998887553 577787 4443 332 2455667775
Q ss_pred -EEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCCCeEEEEEC
Q 006825 509 -ANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKSQHLLSSSM 586 (630)
Q Consensus 509 -vafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd~~LaSgS~ 586 (630)
+.|+ ++ +++++..++.+ ++| + +++. ..+..+...|.+++|+| .++++++.
T Consensus 268 ~~~~s-dg-~~~~~~~~~~~-----------------------~l~-~~~g~~-~~~~~~~~~v~~~~~s~-~~~~~~~~ 319 (347)
T 2gop_A 268 AKIKD-GK-VYFTLFEEGSV-----------------------NLY-IWDGEI-KPIAKGRHWIMGFDVDE-IVVYLKET 319 (347)
T ss_dssp EEEET-TE-EEEEEEETTEE-----------------------EEE-EESSSE-EEEECSSSEEEEEEESS-SEEEEEEC
T ss_pred ccEEc-Cc-EEEEEecCCcE-----------------------EEE-EcCCce-EEEecCCCeEEeeeeeC-cEEEEEcC
Confidence 8999 88 88888888887 566 5 4444 34445677899999999 88888888
Q ss_pred CCcE-EEEeCCCCcEEEEEe-cCC
Q 006825 587 DKTV-RLWHLSSKTCLKIFS-HSD 608 (630)
Q Consensus 587 DgtV-rIWDl~tg~~l~t~~-H~~ 608 (630)
+++. +||.+. ++. ..+. |+.
T Consensus 320 ~~~~~~l~~~~-g~~-~~lt~~n~ 341 (347)
T 2gop_A 320 ATRLRELFTWD-GEE-KQLTDYND 341 (347)
T ss_dssp SSSCCEEEEES-SSE-EECCCTTS
T ss_pred CCChHHheEeC-CcE-EEeccccH
Confidence 8776 888877 653 3344 443
No 186
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.26 E-value=4.4e-10 Score=128.65 Aligned_cols=235 Identities=8% Similarity=-0.099 Sum_probs=151.5
Q ss_pred ecCccceeEEEeec---ceE-----eecCCCccEecccCCCCceeEEecCCccCCE--EEEEEcCCCCeEEeecCCCCC-
Q 006825 336 VGHSPIVQELMRRQ---NVE-----EGNKDSFDLNNNGSSGGGMKSKKKGSWFKSI--RTVASSVTGHKERRSSDERDT- 404 (630)
Q Consensus 336 ~GHs~~V~~Lafs~---~la-----SgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V--~sVAfSpdG~~lasgS~D~dt- 404 (630)
.+|...+..++|+| .|| +|+.+.+++ +||+.+|+.+. . .+...+ ..++|+|||+.|+.++.+...
T Consensus 117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~-v~dl~tg~~~~--~-~~~~~~~~~~~~wspDg~~l~~~~~d~~~~ 192 (695)
T 2bkl_A 117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLH-VIDVDSGEWSK--V-DVIEGGKYATPKWTPDSKGFYYEWLPTDPS 192 (695)
T ss_dssp SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEE-EEETTTCCBCS--S-CCBSCCTTCCCEECTTSSEEEEEECCCCTT
T ss_pred cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEE-EEECCCCCCcC--C-cccCcccccceEEecCCCEEEEEEecCCCC
Confidence 36777788999999 566 677788999 99999998651 1 233333 579999999999887765410
Q ss_pred ccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCC----cE
Q 006825 405 SSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDC----VI 480 (630)
Q Consensus 405 ~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~Dg----tI 480 (630)
.... .......|++|++.+++... .++.....|...+..+.|+|||++|+..+.++ .|
T Consensus 193 ~~~~-----------------~~~~~~~v~~~~l~t~~~~~-~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l 254 (695)
T 2bkl_A 193 IKVD-----------------ERPGYTTIRYHTLGTEPSKD-TVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDV 254 (695)
T ss_dssp SCGG-----------------GGGGGCEEEEEETTSCGGGC-EEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEE
T ss_pred Cccc-----------------cCCCCCEEEEEECCCCchhc-eEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEE
Confidence 0000 00124569999998764321 23344456777899999999999998888776 67
Q ss_pred EEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeC---CCeeeeecccccccccccccCccccccEEEeC-C
Q 006825 481 HVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHL---DNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-S 556 (630)
Q Consensus 481 rVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~---Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-s 556 (630)
.+|+..+++ ...+ ..+...+....+ +++.+++.... ++.| .+|++ +
T Consensus 255 ~~~~~~~~~-~~~l-----~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l-----------------------~~~d~~~ 304 (695)
T 2bkl_A 255 YWKRPGEKD-FRLL-----VKGVGAKYEVHA-WKDRFYVLTDEGAPRQRV-----------------------FEVDPAK 304 (695)
T ss_dssp EEECTTCSS-CEEE-----EECSSCCEEEEE-ETTEEEEEECTTCTTCEE-----------------------EEEBTTB
T ss_pred EEEcCCCCc-eEEe-----ecCCCceEEEEe-cCCcEEEEECCCCCCCEE-----------------------EEEeCCC
Confidence 777665543 2332 223334444455 55554444331 3444 55666 3
Q ss_pred CCc--eEEeccC--CCCEEEEEEcCCCeEEEEECCCcEEEEeCC-CCcEEEEEe-c-CCceEEEE-cCCCcEEE
Q 006825 557 DKP--ICSFQGH--LDDVLDLSWSKSQHLLSSSMDKTVRLWHLS-SKTCLKIFS-H-SDYDISLV-DRLMLRFA 622 (630)
Q Consensus 557 gk~--l~tL~GH--s~~V~sLafSPd~~LaSgS~DgtVrIWDl~-tg~~l~t~~-H-~~~V~sVa-s~~~~~lA 622 (630)
++. ...+..| ...|..++|+.+.++++...|+..+||.+. +++.++.+. + ...|..++ ++++..++
T Consensus 305 ~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~ 378 (695)
T 2bkl_A 305 PARASWKEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAY 378 (695)
T ss_dssp CSGGGCEEEECCCSSCEEEEEEEETTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEE
T ss_pred CCccCCeEEecCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEE
Confidence 332 2444433 445788999854888899999999999765 466777776 4 66777776 66555444
No 187
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.26 E-value=2.8e-09 Score=110.82 Aligned_cols=272 Identities=8% Similarity=-0.073 Sum_probs=170.7
Q ss_pred EEEEeee--cCCCceeEEEEcCCCceEeeeccee--eecCccceeEEEeec--ceEeecCCCccEecccCCCCceeEEec
Q 006825 303 EFVVNEI--QEDGTWKKVKEVGTGRQLTIEEFEM--CVGHSPIVQELMRRQ--NVEEGNKDSFDLNNNGSSGGGMKSKKK 376 (630)
Q Consensus 303 ~~~v~e~--~~dg~~~~l~dv~TG~~lt~eef~~--l~GHs~~V~~Lafs~--~laSgS~D~tvr~vWD~~tG~~~~~lk 376 (630)
.|+++|. +.......+.|..||+.+..- +.. -.......+.|++.. ..++...++++. +||..+++.+.++.
T Consensus 4 ~~v~neg~~g~~~~~l~~~d~~t~~~~~~i-~~~~n~~~lg~~~~~i~~~~~~lyv~~~~~~~v~-viD~~t~~~~~~i~ 81 (328)
T 3dsm_A 4 LFITNEGNFQYSNATLSYYDPATCEVENEV-FYRANGFKLGDVAQSMVIRDGIGWIVVNNSHVIF-AIDINTFKEVGRIT 81 (328)
T ss_dssp EEEEECCCTTSCCBEEEEEETTTTEEECSH-HHHHHSSCCBSCEEEEEEETTEEEEEEGGGTEEE-EEETTTCCEEEEEE
T ss_pred EEEEecCCCCCCCceEEEEECCCCEEhhhh-HhhhcCcccCccceEEEEECCEEEEEEcCCCEEE-EEECcccEEEEEcC
Confidence 3566664 333345678888888866111 110 011224567777766 455556678999 99999999988886
Q ss_pred CCccCCEEEEEEcCCCCeEEeecCCC-----C--Ccc----cc-CC----cceEEEeecCCCeEEEec--CCcEEEEEeC
Q 006825 377 GSWFKSIRTVASSVTGHKERRSSDER-----D--TSS----EK-GG----RRSSSATDDSQDVSFHGQ--ERVRVRQYGK 438 (630)
Q Consensus 377 ~gH~~~V~sVAfSpdG~~lasgS~D~-----d--t~s----~~-gh----~~~Vsa~~~s~d~l~Sgs--~Dg~VriWd~ 438 (630)
.......++++++|+..++...+. + +.. .. +. ......+.+....++.+. .+.+|.+||.
T Consensus 82 --~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~ 159 (328)
T 3dsm_A 82 --GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDT 159 (328)
T ss_dssp --CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEET
T ss_pred --CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEEC
Confidence 346788999999997666653333 1 111 11 11 001112222223344443 4889999999
Q ss_pred CCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCC----------CcEEEEECcCCceeeeeecccccCcccceEE
Q 006825 439 SCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED----------CVIHVWQVVESERKGELLEKQEDGHLNMLLL 508 (630)
Q Consensus 439 ~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~D----------gtIrVWDl~tg~~~~~l~~~~~~gh~~~V~s 508 (630)
.+.++ +.++... .....++++|+|++++++..+ +.|.+||..+++....+. .........
T Consensus 160 ~t~~~-----~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~----~~~g~~p~~ 229 (328)
T 3dsm_A 160 ETDKV-----VDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFK----FKLGDWPSE 229 (328)
T ss_dssp TTTEE-----EEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEE----CCTTCCCEE
T ss_pred CCCeE-----EEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEe----cCCCCCcee
Confidence 87753 3334322 235689999999988877655 789999999887665542 111235788
Q ss_pred EEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceE-E-eccCCCCEEEEEEcCC--CeEEE
Q 006825 509 ANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPIC-S-FQGHLDDVLDLSWSKS--QHLLS 583 (630)
Q Consensus 509 vafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~-t-L~GHs~~V~sLafSPd--~~LaS 583 (630)
++++|+++++..+.. .| .+|+. +++... . +..+......++++|+ .++++
T Consensus 230 la~~~d~~~lyv~~~--~v-----------------------~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva 284 (328)
T 3dsm_A 230 VQLNGTRDTLYWINN--DI-----------------------WRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVA 284 (328)
T ss_dssp EEECTTSCEEEEESS--SE-----------------------EEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEE
T ss_pred EEEecCCCEEEEEcc--EE-----------------------EEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEE
Confidence 999999888877643 55 45555 333221 1 1222456889999995 55666
Q ss_pred E----ECCCcEEEEeCCCCcEEEEEecCCceEEEE
Q 006825 584 S----SMDKTVRLWHLSSKTCLKIFSHSDYDISLV 614 (630)
Q Consensus 584 g----S~DgtVrIWDl~tg~~l~t~~H~~~V~sVa 614 (630)
. ..+++|.+||.. |+.+.++.-......++
T Consensus 285 ~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~P~~~~ 318 (328)
T 3dsm_A 285 DAIDYQQQGIVYRYSPQ-GKLIDEFYVGIIPGAFC 318 (328)
T ss_dssp ECTTSSSEEEEEEECTT-CCEEEEEEEEESEEEEE
T ss_pred cccccccCCEEEEECCC-CCEEEEEEeccCcceEE
Confidence 6 678999999998 99999887333334444
No 188
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.23 E-value=2.3e-09 Score=109.45 Aligned_cols=223 Identities=8% Similarity=-0.100 Sum_probs=148.1
Q ss_pred eEEEEcCCCceEeeecceeeecCc-cceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCC
Q 006825 316 KKVKEVGTGRQLTIEEFEMCVGHS-PIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVT 391 (630)
Q Consensus 316 ~~l~dv~TG~~lt~eef~~l~GHs-~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpd 391 (630)
..++|..||+.+ -++..|. ..+..+++.| .++ +.++.+. .||. +|+.+.+++.++...+.++++.++
T Consensus 17 v~~~d~~tG~~~-----w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~-~~d~-~G~~~W~~~~~~~~~~~~~~~~~d 87 (276)
T 3no2_A 17 IAIINKDTKEIV-----WEYPLEKGWECNSVAATKAGEILF--SYSKGAK-MITR-DGRELWNIAAPAGCEMQTARILPD 87 (276)
T ss_dssp EEEEETTTTEEE-----EEEECCTTCCCCEEEECTTSCEEE--ECBSEEE-EECT-TSCEEEEEECCTTCEEEEEEECTT
T ss_pred EEEEECCCCeEE-----EEeCCCccCCCcCeEECCCCCEEE--eCCCCEE-EECC-CCCEEEEEcCCCCccccccEECCC
Confidence 456777777777 4444443 4577788887 455 4578899 9999 899999998544457889999999
Q ss_pred CCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEE
Q 006825 392 GHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYL 471 (630)
Q Consensus 392 G~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~L 471 (630)
|+++++.+.+ .++|..++...+.+........+.++......+++.++|++|
T Consensus 88 G~~lv~~~~~----------------------------~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~l 139 (276)
T 3no2_A 88 GNALVAWCGH----------------------------PSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYL 139 (276)
T ss_dssp SCEEEEEEST----------------------------TEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEE
T ss_pred CCEEEEecCC----------------------------CCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEE
Confidence 9988754321 222333332211110000000112333455567889999999
Q ss_pred EEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccE
Q 006825 472 ASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPET 551 (630)
Q Consensus 472 ASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~ 551 (630)
++...++.|.+||.. |+.+.++. .. .....+...+++.+++++..++.| .
T Consensus 140 v~~~~~~~v~~~d~~-G~~~w~~~-----~~-~~~~~~~~~~~g~~~v~~~~~~~v-----------------------~ 189 (276)
T 3no2_A 140 VPLFATSEVREIAPN-GQLLNSVK-----LS-GTPFSSAFLDNGDCLVACGDAHCF-----------------------V 189 (276)
T ss_dssp EEETTTTEEEEECTT-SCEEEEEE-----CS-SCCCEEEECTTSCEEEECBTTSEE-----------------------E
T ss_pred EEecCCCEEEEECCC-CCEEEEEE-----CC-CCccceeEcCCCCEEEEeCCCCeE-----------------------E
Confidence 999999999999998 88877752 11 345567788999999988887777 5
Q ss_pred EEeCC-CCceEEeccCC------CCEEEEEEcCC-CeEEEEECC--------CcEEEEeC-CCCcEEEEEe
Q 006825 552 VFALS-DKPICSFQGHL------DDVLDLSWSKS-QHLLSSSMD--------KTVRLWHL-SSKTCLKIFS 605 (630)
Q Consensus 552 Vwdls-gk~l~tL~GHs------~~V~sLafSPd-~~LaSgS~D--------gtVrIWDl-~tg~~l~t~~ 605 (630)
.++.. |+.+.++..+. ..+..++..++ .++++.... +..+++.+ .+|+.+.+|.
T Consensus 190 ~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~ 260 (276)
T 3no2_A 190 QLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLN 260 (276)
T ss_dssp EECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEEC
T ss_pred EEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEec
Confidence 66663 77777765332 33788888888 666666421 23467776 5789888886
No 189
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.18 E-value=2.5e-09 Score=113.09 Aligned_cols=231 Identities=12% Similarity=0.043 Sum_probs=134.7
Q ss_pred cCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEE
Q 006825 355 NKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVR 434 (630)
Q Consensus 355 S~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~Vr 434 (630)
..|+++. +||..+++.+.++. .+... .++|+|||+++..++... .. ...|..++.|.
T Consensus 28 ~~d~~v~-v~D~~t~~~~~~i~-~g~~p--~i~~spdg~~lyv~~~~~-----------------~~--~~~g~~~~~v~ 84 (361)
T 2oiz_A 28 LTESRVH-VYDYTNGKFLGMVP-TAFNG--HVQVSNDGKKIYTMTTYH-----------------ER--ITRGKRSDVVE 84 (361)
T ss_dssp GGGCEEE-EEETTTCCEEEEEE-CCEEE--EEEECTTSSEEEEEEEEE-----------------TT--SSSSCEEEEEE
T ss_pred cccCeEE-EEECCCCeEEEEec-CCCCC--ceEECCCCCEEEEEEecc-----------------cc--cccCCCCCEEE
Confidence 3477888 99999999998888 44444 799999999886432100 00 00122356799
Q ss_pred EEeCCCCcccceeeeeEecc------cCcCEEEEEEccCCCEEEEEeC--CCcEEEEECcCCceeee-eecccccCcccc
Q 006825 435 QYGKSCKDLTALYKCQEIQA------HNGSIWSIKFSLDGRYLASAGE--DCVIHVWQVVESERKGE-LLEKQEDGHLNM 505 (630)
Q Consensus 435 iWd~~~~el~~~~~v~tL~g------Ht~~V~sVaFSpDG~~LASgS~--DgtIrVWDl~tg~~~~~-l~~~~~~gh~~~ 505 (630)
+||..+.+. ++++.. +......|+|+|||++|+++.. +++|.+||+.+++.+.. +.. .+
T Consensus 85 v~d~~t~~~-----~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~---~~---- 152 (361)
T 2oiz_A 85 VWDADKLTF-----EKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA---AG---- 152 (361)
T ss_dssp EEETTTCCE-----EEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG---TT----
T ss_pred EEECcCCcE-----EEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC---CC----
Confidence 999876543 334432 2345678999999999998874 68999999999887766 321 11
Q ss_pred eEEEEECCCC-CEEEEeeCCCeeeeecccc-cccc-----------------cc----------cccCccccccEEEeCC
Q 006825 506 LLLANGSPEP-TSLSPKHLDNHLEKKRRGR-SINR-----------------KS----------LSLDHMVVPETVFALS 556 (630)
Q Consensus 506 V~svafSpdg-~~lasgs~Dg~I~i~~~~~-~~~~-----------------~s----------~s~d~~i~~~~Vwdls 556 (630)
...+.+.|++ ..+++.+.|+.+.++.... .... .. ...++.+ .++++.
T Consensus 153 ~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v---~v~d~~ 229 (361)
T 2oiz_A 153 CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNV---YSADFS 229 (361)
T ss_dssp EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEE---EEEECS
T ss_pred cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeE---EEEEec
Confidence 1112333332 3333333444333322211 0000 00 0011111 344442
Q ss_pred CCce---EEec--c----CC----CCEEEEEEcCC-CeEEEEEC-----------CCcEEEEeCCCCcEEEEEe-cCCce
Q 006825 557 DKPI---CSFQ--G----HL----DDVLDLSWSKS-QHLLSSSM-----------DKTVRLWHLSSKTCLKIFS-HSDYD 610 (630)
Q Consensus 557 gk~l---~tL~--G----Hs----~~V~sLafSPd-~~LaSgS~-----------DgtVrIWDl~tg~~l~t~~-H~~~V 610 (630)
...+ ..+. . +. .....++|+|+ +++..+.. .++|.+||+.+++.+.++. +. +
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p 307 (361)
T 2oiz_A 230 GDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--A 307 (361)
T ss_dssp SSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--C
T ss_pred CCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--e
Confidence 2111 1111 0 00 11112789998 66654432 3589999999999999998 55 8
Q ss_pred EEEE-cCCCcEEEEec
Q 006825 611 ISLV-DRLMLRFAYGA 625 (630)
Q Consensus 611 ~sVa-s~~~~~lAsgs 625 (630)
++|+ ++++..+.++.
T Consensus 308 ~~ia~spdg~~l~v~n 323 (361)
T 2oiz_A 308 LSMTIDQQRNLMLTLD 323 (361)
T ss_dssp CEEEEETTTTEEEEEC
T ss_pred eEEEECCCCCEEEEeC
Confidence 8999 88888776654
No 190
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.17 E-value=1.7e-07 Score=93.19 Aligned_cols=250 Identities=5% Similarity=-0.088 Sum_probs=162.3
Q ss_pred ecCccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-----CC-cc
Q 006825 336 VGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-----DT-SS 406 (630)
Q Consensus 336 ~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-----dt-~s 406 (630)
..+...+..|++.+ ..++...++.+. +||.. ++........+...+.++++.++|...++...+. +. ..
T Consensus 11 ~~~~~~~~~i~~d~~g~l~v~~~~~~~v~-~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~ 88 (299)
T 2z2n_A 11 TNQDTGPYGITVSDKGKVWITQHKANMIS-CINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKGI 88 (299)
T ss_dssp CSSSCCEEEEEECTTSCEEEEETTTTEEE-EECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSC
T ss_pred CCcCCCccceEECCCCCEEEEecCCCcEE-EEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCCc
Confidence 34556788888887 344444467888 99988 6544333224567899999999999877655332 11 11
Q ss_pred -----ccCCcceEEEeecCCCe-E-EEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCc
Q 006825 407 -----EKGGRRSSSATDDSQDV-S-FHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCV 479 (630)
Q Consensus 407 -----~~gh~~~Vsa~~~s~d~-l-~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~Dgt 479 (630)
.......+..+.+.+++ + ++...++.|.+|+. .++.. ...+..+...+..|++.++|+++++...++.
T Consensus 89 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~----~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~ 163 (299)
T 2z2n_A 89 IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIR----EYELPNKGSYPSFITLGSDNALWFTENQNNA 163 (299)
T ss_dssp EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE----EEECSSTTCCEEEEEECTTSCEEEEETTTTE
T ss_pred EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEE----EecCCCCCCCCceEEEcCCCCEEEEeCCCCE
Confidence 11233356666666665 4 44556789999988 44321 1223345567999999999998888777889
Q ss_pred EEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCc
Q 006825 480 IHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKP 559 (630)
Q Consensus 480 IrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~ 559 (630)
|.+||. +++..... .......+..+++.+++.++++...++.| .+|+.+++.
T Consensus 164 i~~~~~-~g~~~~~~----~~~~~~~~~~i~~~~~g~l~v~~~~~~~i-----------------------~~~~~~g~~ 215 (299)
T 2z2n_A 164 IGRITE-SGDITEFK----IPTPASGPVGITKGNDDALWFVEIIGNKI-----------------------GRITTSGEI 215 (299)
T ss_dssp EEEECT-TCCEEEEE----CSSTTCCEEEEEECTTSSEEEEETTTTEE-----------------------EEECTTCCE
T ss_pred EEEEcC-CCcEEEee----CCCCCCcceeEEECCCCCEEEEccCCceE-----------------------EEECCCCcE
Confidence 999998 66543321 12334567899999999988777666777 445553332
Q ss_pred eE-EeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe---cCCceEEEEcCCCcEEE
Q 006825 560 IC-SFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS---HSDYDISLVDRLMLRFA 622 (630)
Q Consensus 560 l~-tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~---H~~~V~sVas~~~~~lA 622 (630)
.. .+..+...+.++++.++ .++++...++.|.+||. +++ +..+. +...+.+++-+.+..++
T Consensus 216 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~~~g~l~v 281 (299)
T 2z2n_A 216 TEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICFDGETIWF 281 (299)
T ss_dssp EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEECSSCEEE
T ss_pred EEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCc-eEEEeCCCCCCccceEEecCCCEEE
Confidence 22 12345567899999999 66666657899999998 554 33442 55678877743333333
No 191
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.13 E-value=3.9e-09 Score=121.80 Aligned_cols=247 Identities=13% Similarity=0.021 Sum_probs=150.7
Q ss_pred ceeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCc
Q 006825 260 SMSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHS 339 (630)
Q Consensus 260 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs 339 (630)
++++||||++|+..++ ..+.+...++|+++++|+..-. ... +
T Consensus 167 ~~~~SPDG~~la~~~~---------~~G~e~~~i~v~dl~tg~~~~~-~~~---------~------------------- 208 (741)
T 1yr2_A 167 AWAASDDGRLLAYSVQ---------DGGSDWRTVKFVGVADGKPLAD-ELK---------W------------------- 208 (741)
T ss_dssp EEEECTTSSEEEEEEE---------ETTCSEEEEEEEETTTCCEEEE-EEE---------E-------------------
T ss_pred eEEECCCCCEEEEEEc---------CCCCceEEEEEEECCCCCCCCc-cCC---------C-------------------
Confidence 3699999999966663 1233445677788877765321 000 0
Q ss_pred cceeEEEeec--ceEeecCCC--------------ccEecccCCCCce--eEEec-CCccCCEEEEEEcCCCCeEEeecC
Q 006825 340 PIVQELMRRQ--NVEEGNKDS--------------FDLNNNGSSGGGM--KSKKK-GSWFKSIRTVASSVTGHKERRSSD 400 (630)
Q Consensus 340 ~~V~~Lafs~--~laSgS~D~--------------tvr~vWD~~tG~~--~~~lk-~gH~~~V~sVAfSpdG~~lasgS~ 400 (630)
..+..++|+| .|+.++.|. .+. +|++.++.. ...+. ..|...+..++|||||++|+..+.
T Consensus 209 ~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~-~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~ 287 (741)
T 1yr2_A 209 VKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVW-LHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSS 287 (741)
T ss_dssp EESCCCEESTTSEEEEEECCCC--------CCCCCEEE-EEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEE
T ss_pred ceeccEEEECCCEEEEEEecCcccccccccCCCCCEEE-EEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEE
Confidence 0012233333 233333333 377 889888763 22222 134456889999999998875432
Q ss_pred CCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCC---
Q 006825 401 ERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED--- 477 (630)
Q Consensus 401 D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~D--- 477 (630)
+. . .....|++||+.+++.. +...|..+...+.... +|+|+.|+..+.+
T Consensus 288 ~~------------------~------~~~~~l~~~d~~~~~~~---~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~ 339 (741)
T 1yr2_A 288 EG------------------T------DPVNTVHVARVTNGKIG---PVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAP 339 (741)
T ss_dssp CT------------------T------CSCCEEEEEEEETTEEC---CCEEEECSSSSCEEEE-EEETTEEEEEECTTCT
T ss_pred cc------------------C------CCcceEEEEECCCCCCc---ccEEecCCCCceEEEE-eccCCEEEEEECCCCC
Confidence 21 0 02447899998765210 1244556666665553 4899988888764
Q ss_pred -CcEEEEECcCCc-eeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC
Q 006825 478 -CVIHVWQVVESE-RKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL 555 (630)
Q Consensus 478 -gtIrVWDl~tg~-~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl 555 (630)
+.|.+||+.++. ....++ ..+...+..+.+. ++.++++...++..++ .++++
T Consensus 340 ~~~l~~~d~~~~~~~~~~l~----~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l---------------------~~~~~ 393 (741)
T 1yr2_A 340 LKKIVRVDLSGSTPRFDTVV----PESKDNLESVGIA-GNRLFASYIHDAKSQV---------------------LAFDL 393 (741)
T ss_dssp TCEEEEEECSSSSCEEEEEE----CCCSSEEEEEEEE-BTEEEEEEEETTEEEE---------------------EEEET
T ss_pred CCEEEEEeCCCCccccEEEe----cCCCCeEEEEEEE-CCEEEEEEEECCEEEE---------------------EEEeC
Confidence 449999998752 334432 3444456667776 5677778878887632 23344
Q ss_pred CCCceEEeccC-CCCEEEEEEcCC-CeEE-EEE---CCCcEEEEeCCCCc
Q 006825 556 SDKPICSFQGH-LDDVLDLSWSKS-QHLL-SSS---MDKTVRLWHLSSKT 599 (630)
Q Consensus 556 sgk~l~tL~GH-s~~V~sLafSPd-~~La-SgS---~DgtVrIWDl~tg~ 599 (630)
.++.+..+..+ ...|..++|+|+ ..|+ +.+ ..++|++||+.+++
T Consensus 394 ~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 394 DGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp TSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred CCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 56767777653 677899999998 5444 333 35899999998876
No 192
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.13 E-value=1e-08 Score=101.31 Aligned_cols=196 Identities=7% Similarity=-0.068 Sum_probs=133.2
Q ss_pred cceeEEEeec--c-eEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEE
Q 006825 340 PIVQELMRRQ--N-VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSA 416 (630)
Q Consensus 340 ~~V~~Lafs~--~-laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa 416 (630)
..+..|++.+ . .++.. ++.+. +||..++.. ..+.......+..+++.++|+..++
T Consensus 67 ~~p~~i~~~~~g~l~v~~~-~~~i~-~~d~~~~~~-~~~~~~~~~~p~~i~~~~~g~l~v~------------------- 124 (270)
T 1rwi_B 67 YQPQGLAVDGAGTVYVTDF-NNRVV-TLAAGSNNQ-TVLPFDGLNYPEGLAVDTQGAVYVA------------------- 124 (270)
T ss_dssp CSCCCEEECTTCCEEEEET-TTEEE-EECTTCSCC-EECCCCSCSSEEEEEECTTCCEEEE-------------------
T ss_pred CCcceeEECCCCCEEEEcC-CCEEE-EEeCCCceE-eeeecCCcCCCcceEECCCCCEEEE-------------------
Confidence 4566777776 2 33333 77888 899866544 3333244567889999998875542
Q ss_pred eecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeec
Q 006825 417 TDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLE 496 (630)
Q Consensus 417 ~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~ 496 (630)
...++.|.+|+...... ......+...+..|+++++|+++++...++.|.+|+..........
T Consensus 125 ----------~~~~~~i~~~~~~~~~~-----~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~-- 187 (270)
T 1rwi_B 125 ----------DRGNNRVVKLAAGSKTQ-----TVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLP-- 187 (270)
T ss_dssp ----------EGGGTEEEEECTTCCSC-----EECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECC--
T ss_pred ----------ECCCCEEEEEECCCcee-----EeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeec--
Confidence 23356788886543321 1112233446789999999998888878899999998765543321
Q ss_pred ccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEec-cCCCCEEEEEE
Q 006825 497 KQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ-GHLDDVLDLSW 575 (630)
Q Consensus 497 ~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~-GHs~~V~sLaf 575 (630)
..+...+..+++.++|.++++...++.| .+|+..+..+..+. .+...+.++++
T Consensus 188 ---~~~~~~p~~i~~d~~g~l~v~~~~~~~v-----------------------~~~~~~~~~~~~~~~~~~~~p~~i~~ 241 (270)
T 1rwi_B 188 ---FTDITAPWGIAVDEAGTVYVTEHNTNQV-----------------------VKLLAGSTTSTVLPFTGLNTPLAVAV 241 (270)
T ss_dssp ---CSSCCSEEEEEECTTCCEEEEETTTSCE-----------------------EEECTTCSCCEECCCCSCSCEEEEEE
T ss_pred ---ccCCCCceEEEECCCCCEEEEECCCCcE-----------------------EEEcCCCCcceeeccCCCCCceeEEE
Confidence 2333667899999999888887777777 55665444333332 34467899999
Q ss_pred cCC-CeEEEEECCCcEEEEeCCCCcE
Q 006825 576 SKS-QHLLSSSMDKTVRLWHLSSKTC 600 (630)
Q Consensus 576 SPd-~~LaSgS~DgtVrIWDl~tg~~ 600 (630)
.++ .++++...+++|+++++...+.
T Consensus 242 ~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 242 DSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp CTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred CCCCCEEEEECCCCEEEEEcCCCccc
Confidence 999 8888889999999999876543
No 193
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.13 E-value=1.7e-08 Score=101.76 Aligned_cols=233 Identities=8% Similarity=-0.013 Sum_probs=150.0
Q ss_pred eeecCccceeEEEeec---ceEe-------ecCCCccEecccCCCCceeEEec---CCccCCEEEEEEcCC-CCeEEeec
Q 006825 334 MCVGHSPIVQELMRRQ---NVEE-------GNKDSFDLNNNGSSGGGMKSKKK---GSWFKSIRTVASSVT-GHKERRSS 399 (630)
Q Consensus 334 ~l~GHs~~V~~Lafs~---~laS-------gS~D~tvr~vWD~~tG~~~~~lk---~gH~~~V~sVAfSpd-G~~lasgS 399 (630)
.+.+.-.....++|.+ .+++ +..++.+. +||..+|+...... .++...+.+++++++ |++.++..
T Consensus 12 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~-~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~ 90 (314)
T 1pjx_A 12 KVTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEIL-RIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM 90 (314)
T ss_dssp EEECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEE-EECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET
T ss_pred hhhccCCCccCceECCCCCEEEEEeccccCCCCCCEEE-EEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC
Confidence 3344444556777765 3444 56788899 99988887653322 136678999999999 88666554
Q ss_pred CCC----CC-cc---c-c----C-CcceEEEeecCCCe-EEEec-CC---------------cEEEEEeCCCCcccceee
Q 006825 400 DER----DT-SS---E-K----G-GRRSSSATDDSQDV-SFHGQ-ER---------------VRVRQYGKSCKDLTALYK 448 (630)
Q Consensus 400 ~D~----dt-~s---~-~----g-h~~~Vsa~~~s~d~-l~Sgs-~D---------------g~VriWd~~~~el~~~~~ 448 (630)
.++ +. +. . . + +...+..+.+.+++ ++.+. .+ +.|..|+.. +++
T Consensus 91 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~----- 164 (314)
T 1pjx_A 91 RLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQM----- 164 (314)
T ss_dssp TTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCE-----
T ss_pred CCCEEEEeCCCCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCE-----
Confidence 332 10 11 1 1 1 11235566666666 44333 33 577778765 332
Q ss_pred eeEecccCcCEEEEEEc----cCCCEE-EEEeCCCcEEEEECc-CCceeeeeecccccCcc-cceEEEEECCCCCEEEEe
Q 006825 449 CQEIQAHNGSIWSIKFS----LDGRYL-ASAGEDCVIHVWQVV-ESERKGELLEKQEDGHL-NMLLLANGSPEPTSLSPK 521 (630)
Q Consensus 449 v~tL~gHt~~V~sVaFS----pDG~~L-ASgS~DgtIrVWDl~-tg~~~~~l~~~~~~gh~-~~V~svafSpdg~~lasg 521 (630)
..+..+......++|+ |+|+.| ++...++.|.+|++. ++............++. .....++++++|.++++.
T Consensus 165 -~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~ 243 (314)
T 1pjx_A 165 -IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVAN 243 (314)
T ss_dssp -EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEE
T ss_pred -EEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEE
Confidence 2233344567899999 999755 444678999999986 34321110111123333 557789999999998887
Q ss_pred eCCCeeeeecccccccccccccCccccccEEEeCC-CCceEEeccCCCCEEEEEEcCC-C-eEEEEECCCcEEEEeCCC
Q 006825 522 HLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS-DKPICSFQGHLDDVLDLSWSKS-Q-HLLSSSMDKTVRLWHLSS 597 (630)
Q Consensus 522 s~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdls-gk~l~tL~GHs~~V~sLafSPd-~-~LaSgS~DgtVrIWDl~t 597 (630)
..++.| .+|+.. ++.+..+..+...+.+++|+|+ + ++++...++.|..|++..
T Consensus 244 ~~~~~i-----------------------~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 244 WGSSHI-----------------------EVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp ETTTEE-----------------------EEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred cCCCEE-----------------------EEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 777777 667774 7777777777788999999999 6 455666678999999875
No 194
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.13 E-value=1.1e-08 Score=100.97 Aligned_cols=219 Identities=6% Similarity=-0.087 Sum_probs=142.2
Q ss_pred ceeEEEeec---ceE-eecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEE
Q 006825 341 IVQELMRRQ---NVE-EGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSA 416 (630)
Q Consensus 341 ~V~~Lafs~---~la-SgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa 416 (630)
....|++.+ ..+ +...++.+. +|+..++....... .+...+.++++.++|+++++
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~-~~~~~~~~~~~~~~-~~~~~p~~i~~~~~g~l~v~------------------- 83 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVV-KLATGSTGTTVLPF-NGLYQPQGLAVDGAGTVYVT------------------- 83 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEE-EECC-----EECCC-CSCCSCCCEEECTTCCEEEE-------------------
T ss_pred CccceEECCCCCEEEEccCCCCcEE-EecCCCcccceEee-CCcCCcceeEECCCCCEEEE-------------------
Confidence 456677766 244 446778888 88876554332222 45566778888888764432
Q ss_pred eecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEec-ccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeee
Q 006825 417 TDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQ-AHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELL 495 (630)
Q Consensus 417 ~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~-gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~ 495 (630)
.. ++.|.+|+...... ..+. .....+..|+++++|+++++...++.|.+|+..+......
T Consensus 84 ----------~~-~~~i~~~d~~~~~~------~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~-- 144 (270)
T 1rwi_B 84 ----------DF-NNRVVTLAAGSNNQ------TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL-- 144 (270)
T ss_dssp ----------ET-TTEEEEECTTCSCC------EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC--
T ss_pred ----------cC-CCEEEEEeCCCceE------eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee--
Confidence 22 56789998766532 1222 2335789999999999888888889999997654433221
Q ss_pred cccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEe-ccCCCCEEEEE
Q 006825 496 EKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSF-QGHLDDVLDLS 574 (630)
Q Consensus 496 ~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL-~GHs~~V~sLa 574 (630)
.......+..++++++++++++...++.| .+|+..+...... ..+...+..|+
T Consensus 145 ---~~~~~~~p~~i~~~~~g~l~v~~~~~~~i-----------------------~~~~~~~~~~~~~~~~~~~~p~~i~ 198 (270)
T 1rwi_B 145 ---PFTGLNDPDGVAVDNSGNVYVTDTDNNRV-----------------------VKLEAESNNQVVLPFTDITAPWGIA 198 (270)
T ss_dssp ---CCCSCCSCCCEEECTTCCEEEEEGGGTEE-----------------------EEECTTTCCEEECCCSSCCSEEEEE
T ss_pred ---ccccCCCceeEEEeCCCCEEEEECCCCEE-----------------------EEEecCCCceEeecccCCCCceEEE
Confidence 12223456789999999988877667777 5555544333322 23446789999
Q ss_pred EcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcEEEEec
Q 006825 575 WSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLRFAYGA 625 (630)
Q Consensus 575 fSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~lAsgs 625 (630)
+.++ .++++...++.|.+|+........... +...+.+++ ++++..++++.
T Consensus 199 ~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~ 252 (270)
T 1rwi_B 199 VDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADR 252 (270)
T ss_dssp ECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEG
T ss_pred ECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEEC
Confidence 9999 777777788999999997655443222 446788998 77776666553
No 195
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.07 E-value=1.8e-08 Score=116.15 Aligned_cols=236 Identities=11% Similarity=-0.047 Sum_probs=145.0
Q ss_pred cCccceeEEEeec---ceEeecCC-----CccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCcccc
Q 006825 337 GHSPIVQELMRRQ---NVEEGNKD-----SFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEK 408 (630)
Q Consensus 337 GHs~~V~~Lafs~---~laSgS~D-----~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~ 408 (630)
+|...+..++|+| .||.++.+ .+++ +||+.+|+.+.... +...+..++|+|| +.|+.++.+....
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~-v~dl~tg~~~~~~~--~~~~~~~~~wspD-~~l~~~~~~~~~~--- 232 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVK-FVGVADGKPLADEL--KWVKFSGLAWLGN-DALLYSRFAEPKE--- 232 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEE-EEETTTCCEEEEEE--EEEESCCCEESTT-SEEEEEECCCC-----
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEE-EEECCCCCCCCccC--CCceeccEEEECC-CEEEEEEecCccc---
Confidence 4445678889998 45554433 5688 99999998765322 1112347899999 9888776553100
Q ss_pred CCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCC-----cEEEE
Q 006825 409 GGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDC-----VIHVW 483 (630)
Q Consensus 409 gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~Dg-----tIrVW 483 (630)
+ ..+........|++|++.++.... .++.....|...+..+.|+|||++|+..+.++ .|++|
T Consensus 233 ~------------~~~~~~~~~~~v~~~~lgt~~~~~-~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~ 299 (741)
T 1yr2_A 233 G------------QAFQALNYNQTVWLHRLGTPQSAD-QPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVA 299 (741)
T ss_dssp ------------------CCCCCEEEEEETTSCGGGC-EEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEE
T ss_pred c------------cccccCCCCCEEEEEECCCCchhC-EEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEE
Confidence 0 001111234579999987654211 12333344555689999999999998887654 89999
Q ss_pred ECcCCce--eeeeecccccCcccceEEEEECCCCCEEEEeeCCC----eeeeecccccccccccccCccccccEEEeCCC
Q 006825 484 QVVESER--KGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN----HLEKKRRGRSINRKSLSLDHMVVPETVFALSD 557 (630)
Q Consensus 484 Dl~tg~~--~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg----~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsg 557 (630)
|+.++.. ...+ ..+...+.... +|++..|+..+.++ .| .+|++.+
T Consensus 300 d~~~~~~~~~~~l-----~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l-----------------------~~~d~~~ 350 (741)
T 1yr2_A 300 RVTNGKIGPVTAL-----IPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKI-----------------------VRVDLSG 350 (741)
T ss_dssp EEETTEECCCEEE-----ECSSSSCEEEE-EEETTEEEEEECTTCTTCEE-----------------------EEEECSS
T ss_pred ECCCCCCcccEEe-----cCCCCceEEEE-eccCCEEEEEECCCCCCCEE-----------------------EEEeCCC
Confidence 9987621 3333 22223333333 38888887766543 23 5566633
Q ss_pred --CceEE-eccCCCCEEEEEEcCCCeEEEEECCCcEEEEeCC-CCcEEEEEe--cCCceEEEE-cCCCcEE
Q 006825 558 --KPICS-FQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLS-SKTCLKIFS--HSDYDISLV-DRLMLRF 621 (630)
Q Consensus 558 --k~l~t-L~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~-tg~~l~t~~--H~~~V~sVa-s~~~~~l 621 (630)
..... +..+...+..++|..+.++++...|+..+||.+. +++.++.+. +...|..+. ++++..+
T Consensus 351 ~~~~~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l 421 (741)
T 1yr2_A 351 STPRFDTVVPESKDNLESVGIAGNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHA 421 (741)
T ss_dssp SSCEEEEEECCCSSEEEEEEEEBTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCE
T ss_pred CccccEEEecCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEE
Confidence 23333 3445555677888854788899999998888665 567777776 467788887 5554433
No 196
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.00 E-value=1.1e-06 Score=87.12 Aligned_cols=249 Identities=6% Similarity=-0.088 Sum_probs=160.5
Q ss_pred ccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-----CC-cc---
Q 006825 339 SPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-----DT-SS--- 406 (630)
Q Consensus 339 s~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-----dt-~s--- 406 (630)
...+..|++.+ ..++...++.+. +||.. ++........+...+.++++.++|...++..... +. +.
T Consensus 19 ~~~p~~i~~d~~g~l~v~~~~~~~v~-~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~g~~~~ 96 (300)
T 2qc5_A 19 DSGPYGITSSEDGKVWFTQHKANKIS-SLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKKGGFTE 96 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEE-EECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEE
T ss_pred CCCcceeeECCCCCEEEEcCCCCeEE-EECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCCCCeEE
Confidence 34567777766 344445678888 89887 6554422224567899999999999777654332 11 11
Q ss_pred --ccCCcceEEEeecCCCe-E-EEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEE
Q 006825 407 --EKGGRRSSSATDDSQDV-S-FHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHV 482 (630)
Q Consensus 407 --~~gh~~~Vsa~~~s~d~-l-~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrV 482 (630)
.......+..+.+.+++ + ++....+.|..|+.. ++.. ...+......+..|++.++|+++++...++.|.+
T Consensus 97 ~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~----~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~ 171 (300)
T 2qc5_A 97 YPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY----EYDLPNKGSYPAFITLGSDNALWFTENQNNSIGR 171 (300)
T ss_dssp EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE----EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred ecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE----EccCCCCCCCceeEEECCCCCEEEEecCCCeEEE
Confidence 11122445566666555 4 444557889999876 4321 1123345567899999999998777777889999
Q ss_pred EECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEE
Q 006825 483 WQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICS 562 (630)
Q Consensus 483 WDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~t 562 (630)
|+. +++... +. ...+...+..+++.+++.++++....+.| .+|+.+++....
T Consensus 172 ~~~-~g~~~~-~~---~~~~~~~~~~i~~d~~g~l~v~~~~~~~i-----------------------~~~~~~g~~~~~ 223 (300)
T 2qc5_A 172 ITN-TGKLEE-YP---LPTNAAAPVGITSGNDGALWFVEIMGNKI-----------------------GRITTTGEISEY 223 (300)
T ss_dssp ECT-TCCEEE-EE---CSSTTCCEEEEEECTTSSEEEEETTTTEE-----------------------EEECTTCCEEEE
T ss_pred ECC-CCcEEE-ee---CCCCCCCcceEEECCCCCEEEEccCCCEE-----------------------EEEcCCCcEEEE
Confidence 998 554432 21 13344567899999999888777666666 445554433322
Q ss_pred -eccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEE--e-cCCceEEEE-cCCCcEEEEe
Q 006825 563 -FQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIF--S-HSDYDISLV-DRLMLRFAYG 624 (630)
Q Consensus 563 -L~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~--~-H~~~V~sVa-s~~~~~lAsg 624 (630)
+..+...+.+|++.++ .++++...++.|.+||. +++.. .+ . ....+.+++ ++.+..+...
T Consensus 224 ~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~ 289 (300)
T 2qc5_A 224 DIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSVWFAL 289 (300)
T ss_dssp ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTTSCEEEEC
T ss_pred ECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECCccCCccceeEeCCCCCEEEEc
Confidence 2345567899999999 66666666799999998 45443 33 3 456678888 6666655444
No 197
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.00 E-value=2.3e-06 Score=84.79 Aligned_cols=224 Identities=9% Similarity=-0.084 Sum_probs=142.9
Q ss_pred CccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-----CC-cc--
Q 006825 338 HSPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-----DT-SS-- 406 (630)
Q Consensus 338 Hs~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-----dt-~s-- 406 (630)
+...+..|++.+ ..++...++.+. .||.. |+............+..+++.++|.+.++...+. +. ..
T Consensus 55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~-~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~ 132 (299)
T 2z2n_A 55 PDAKVMCLTISSDGEVWFTENAANKIG-RITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDDGKIR 132 (299)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEE-EECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEE
T ss_pred ccCceeeEEECCCCCEEEeCCCCCeEE-EECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECCCCCEE
Confidence 345678888876 344555567788 88876 4432221113566899999999999877654432 11 11
Q ss_pred ---ccCCcceEEEeecCCCe-E-EEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEE
Q 006825 407 ---EKGGRRSSSATDDSQDV-S-FHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIH 481 (630)
Q Consensus 407 ---~~gh~~~Vsa~~~s~d~-l-~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIr 481 (630)
...+...+..+.+.+++ + ++....+.|..|+. ++++.. ..+..+...+..|++.++|+++++...++.|.
T Consensus 133 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~----~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~ 207 (299)
T 2z2n_A 133 EYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITE----FKIPTPASGPVGITKGNDDALWFVEIIGNKIG 207 (299)
T ss_dssp EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE----EECSSTTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred EecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE----eeCCCCCCcceeEEECCCCCEEEEccCCceEE
Confidence 12233445666666665 4 44455789999998 544321 12344556789999999999888777788999
Q ss_pred EEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceE
Q 006825 482 VWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPIC 561 (630)
Q Consensus 482 VWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~ 561 (630)
+|+. ++.... +. ...+...+..+++.++|.++++...++.| ..|+..++ +.
T Consensus 208 ~~~~-~g~~~~-~~---~~~~~~~~~~i~~~~~g~l~v~~~~~~~i-----------------------~~~d~~g~-~~ 258 (299)
T 2z2n_A 208 RITT-SGEITE-FK---IPTPNARPHAITAGAGIDLWFTEWGANKI-----------------------GRLTSNNI-IE 258 (299)
T ss_dssp EECT-TCCEEE-EE---CSSTTCCEEEEEECSTTCEEEEETTTTEE-----------------------EEEETTTE-EE
T ss_pred EECC-CCcEEE-EE---CCCCCCCceeEEECCCCCEEEeccCCceE-----------------------EEECCCCc-eE
Confidence 9999 665332 21 23345678899999999987776566777 45555443 22
Q ss_pred E--eccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCc
Q 006825 562 S--FQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKT 599 (630)
Q Consensus 562 t--L~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~ 599 (630)
. +.++...+.++++ ++ .++++.+ .+.|..++..+++
T Consensus 259 ~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 259 EYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKDN 297 (299)
T ss_dssp EEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC---
T ss_pred EEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCccc
Confidence 2 2345577999999 87 5545444 5667777776653
No 198
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.99 E-value=3.8e-07 Score=92.85 Aligned_cols=237 Identities=6% Similarity=-0.075 Sum_probs=148.2
Q ss_pred cccEEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec--ceEeecCCCccEecccCC
Q 006825 290 EQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ--NVEEGNKDSFDLNNNGSS 367 (630)
Q Consensus 290 ~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~--~laSgS~D~tvr~vWD~~ 367 (630)
=...-+|+-+++..+++... +.....++..+++...+ .+...+..+++.+ .+..+. +..+. +||..
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~---~~~i~~~d~~~~~~~~~-------~~~~~~~~i~~~~dG~l~v~~-~~~l~-~~d~~ 81 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIP---AKKVCRWDSFTKQVQRV-------TMDAPVSSVALRQSGGYVATI-GTKFC-ALNWK 81 (297)
T ss_dssp BEEEEEEETTTTEEEEEETT---TTEEEEEETTTCCEEEE-------ECSSCEEEEEEBTTSSEEEEE-TTEEE-EEETT
T ss_pred cccCCeEECCCCEEEEEECC---CCEEEEEECCCCcEEEE-------eCCCceEEEEECCCCCEEEEE-CCeEE-EEECC
Confidence 34577888888877777543 22345678888765422 1235688999988 444444 46777 89998
Q ss_pred CCceeEEecC---CccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCccc
Q 006825 368 GGGMKSKKKG---SWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLT 444 (630)
Q Consensus 368 tG~~~~~lk~---gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~ 444 (630)
+|+....... .....++.++++|+|++.++........ .......+.|..++... .
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~------------------~~~~~~~~~l~~~d~~g-~-- 140 (297)
T 3g4e_A 82 EQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAP------------------AVLERHQGALYSLFPDH-H-- 140 (297)
T ss_dssp TTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBT------------------TBCCTTCEEEEEECTTS-C--
T ss_pred CCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCccccc------------------ccccCCCcEEEEEECCC-C--
Confidence 8875443321 1234588999999998665422110000 00001123455554431 1
Q ss_pred ceeeeeEecccCcCEEEEEEccCCCEE-EEEeCCCcEEEEEC--cCCceee-eeecccccCcccceEEEEECCCCCEEEE
Q 006825 445 ALYKCQEIQAHNGSIWSIKFSLDGRYL-ASAGEDCVIHVWQV--VESERKG-ELLEKQEDGHLNMLLLANGSPEPTSLSP 520 (630)
Q Consensus 445 ~~~~v~tL~gHt~~V~sVaFSpDG~~L-ASgS~DgtIrVWDl--~tg~~~~-~l~~~~~~gh~~~V~svafSpdg~~las 520 (630)
+..+..+....+.++|+|||+.| ++.+.++.|.+|++ .++.... ..+ ..+..+......+++.++|.++++
T Consensus 141 ----~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~-~~~~~~~~~p~g~~~d~~G~lwva 215 (297)
T 3g4e_A 141 ----VKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSV-YKLEKEEQIPDGMCIDAEGKLWVA 215 (297)
T ss_dssp ----EEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEE-EECCGGGCEEEEEEEBTTSCEEEE
T ss_pred ----EEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEE-EECCCCCCCCCeeEECCCCCEEEE
Confidence 11223344557899999999866 55567889999997 4554321 111 111233456778999999998888
Q ss_pred eeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEc-CC-CeE-EEEECC
Q 006825 521 KHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWS-KS-QHL-LSSSMD 587 (630)
Q Consensus 521 gs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafS-Pd-~~L-aSgS~D 587 (630)
....+.| ..|+. +|+.+..+..+...+++++|. |+ +.| ++...+
T Consensus 216 ~~~~~~v-----------------------~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 216 CYNGGRV-----------------------IRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCARD 263 (297)
T ss_dssp EETTTEE-----------------------EEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEBCT
T ss_pred EcCCCEE-----------------------EEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcCCc
Confidence 8777777 77887 589999998888889999998 77 544 455443
No 199
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.98 E-value=8.1e-09 Score=111.35 Aligned_cols=131 Identities=12% Similarity=0.055 Sum_probs=99.4
Q ss_pred ccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccc
Q 006825 454 AHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRG 533 (630)
Q Consensus 454 gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~ 533 (630)
.+.. |+.|+| |+++|+++ .++.|++||+.+......+ ..|...+..+.+.+. .++.+..||.+
T Consensus 86 ~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~-----~~~~~~v~~i~~~~p--~~av~~~dG~L------ 148 (388)
T 1xip_A 86 EIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTV-----TSFEKPVFQLKNVNN--TLVILNSVNDL------ 148 (388)
T ss_dssp ECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEE-----EECSSCEEEEEECSS--EEEEEETTSEE------
T ss_pred eCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCcc-----ceeecceeeEEecCC--CEEEEECCCCE------
Confidence 4667 999999 99999999 8899999999876644432 344556777766543 27778899999
Q ss_pred ccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcE--EEEE------e
Q 006825 534 RSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTC--LKIF------S 605 (630)
Q Consensus 534 ~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~--l~t~------~ 605 (630)
.+|++....... +...|.+++|||++ ++.|..||+|++|+...+++ .+++ .
T Consensus 149 -----------------~v~dl~~~~~~~---~~~~Vs~v~WSpkG-~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~ 207 (388)
T 1xip_A 149 -----------------SALDLRTKSTKQ---LAQNVTSFDVTNSQ-LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELE 207 (388)
T ss_dssp -----------------EEEETTTCCEEE---EEESEEEEEECSSE-EEEEETTSCEEEEEEETTEEEEEEEECCCHHHH
T ss_pred -----------------EEEEccCCcccc---ccCCceEEEEcCCc-eEEEEcCCcEEEEcCCCccccccceecCCcccc
Confidence 788884332222 45689999999987 78899999999999988886 6777 2
Q ss_pred ----cCCceEEEE-cCCCcEEE
Q 006825 606 ----HSDYDISLV-DRLMLRFA 622 (630)
Q Consensus 606 ----H~~~V~sVa-s~~~~~lA 622 (630)
|...|.+|. .++..+++
T Consensus 208 ~~~~~~~~V~sI~wl~~~~flv 229 (388)
T 1xip_A 208 ELPVEEYSPLSVTILSPQDFLA 229 (388)
T ss_dssp TSCTTTSEEEEEEESSSSEEEE
T ss_pred cccCCCeeEEEEEEecCCeEEE
Confidence 678899999 54544443
No 200
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.95 E-value=4.2e-07 Score=92.56 Aligned_cols=204 Identities=8% Similarity=-0.005 Sum_probs=132.7
Q ss_pred eEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCC
Q 006825 351 VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQER 430 (630)
Q Consensus 351 laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~D 430 (630)
+++....+++. .||..+++.. .+ .+...+.+++++++|++++.. +
T Consensus 28 ~~~d~~~~~i~-~~d~~~~~~~-~~--~~~~~~~~i~~~~dG~l~v~~-------------------------------~ 72 (297)
T 3g4e_A 28 LFVDIPAKKVC-RWDSFTKQVQ-RV--TMDAPVSSVALRQSGGYVATI-------------------------------G 72 (297)
T ss_dssp EEEETTTTEEE-EEETTTCCEE-EE--ECSSCEEEEEEBTTSSEEEEE-------------------------------T
T ss_pred EEEECCCCEEE-EEECCCCcEE-EE--eCCCceEEEEECCCCCEEEEE-------------------------------C
Confidence 45666678888 9999887653 22 244679999999999855421 2
Q ss_pred cEEEEEeCCCCcccceeeeeEec-c-cCcCEEEEEEccCCCEEEEEeC---------CCcEEEEECcCCceeeeeecccc
Q 006825 431 VRVRQYGKSCKDLTALYKCQEIQ-A-HNGSIWSIKFSLDGRYLASAGE---------DCVIHVWQVVESERKGELLEKQE 499 (630)
Q Consensus 431 g~VriWd~~~~el~~~~~v~tL~-g-Ht~~V~sVaFSpDG~~LASgS~---------DgtIrVWDl~tg~~~~~l~~~~~ 499 (630)
..|.+|+..++++.. +.... + ....++.++++|+|+++++... ....+||.+........+
T Consensus 73 ~~l~~~d~~~g~~~~---~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~----- 144 (297)
T 3g4e_A 73 TKFCALNWKEQSAVV---LATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKY----- 144 (297)
T ss_dssp TEEEEEETTTTEEEE---EEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEE-----
T ss_pred CeEEEEECCCCcEEE---EEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEE-----
Confidence 357888877664321 11111 1 2345899999999997776532 234566666533222222
Q ss_pred cCcccceEEEEECCCCCEEE-EeeCCCeeeeecccccccccccccCccccccEEEeC---CCC-----ceEEeccCCCCE
Q 006825 500 DGHLNMLLLANGSPEPTSLS-PKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL---SDK-----PICSFQGHLDDV 570 (630)
Q Consensus 500 ~gh~~~V~svafSpdg~~la-sgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl---sgk-----~l~tL~GHs~~V 570 (630)
..+......++|+|+++.++ +....+.|. +|++ ++. .+..+..+....
T Consensus 145 ~~~~~~pngi~~spdg~~lyv~~~~~~~i~-----------------------~~~~d~~~G~~~~~~~~~~~~~~~~~p 201 (297)
T 3g4e_A 145 FDQVDISNGLDWSLDHKIFYYIDSLSYSVD-----------------------AFDYDLQTGQISNRRSVYKLEKEEQIP 201 (297)
T ss_dssp EEEESBEEEEEECTTSCEEEEEEGGGTEEE-----------------------EEEECTTTCCEEEEEEEEECCGGGCEE
T ss_pred eeccccccceEEcCCCCEEEEecCCCCcEE-----------------------EEeccCCCCcccCcEEEEECCCCCCCC
Confidence 22234467899999998664 445566663 3332 222 122333444567
Q ss_pred EEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-c-CCCcE
Q 006825 571 LDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-D-RLMLR 620 (630)
Q Consensus 571 ~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s-~~~~~ 620 (630)
..+++.++ .++++....+.|.+||..+|+.+..+. +...+++++ . +++..
T Consensus 202 ~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~ 255 (297)
T 3g4e_A 202 DGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSE 255 (297)
T ss_dssp EEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCE
T ss_pred CeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCE
Confidence 89999999 777777788899999999999999998 767899999 3 55443
No 201
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.94 E-value=1e-06 Score=99.45 Aligned_cols=261 Identities=10% Similarity=-0.067 Sum_probs=163.8
Q ss_pred ECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCCccEecccCC--CCce
Q 006825 297 NLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDSFDLNNNGSS--GGGM 371 (630)
Q Consensus 297 ~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~tvr~vWD~~--tG~~ 371 (630)
..|-+..++|... +.-...+.|..|++.+ .++.. ...+..++|+| ++..++.|+++. +||+. +++.
T Consensus 162 ~~d~~~~~~V~~~--~~~~V~viD~~t~~v~-----~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~-viD~~~~t~~~ 232 (567)
T 1qks_A 162 DWDLENLFSVTLR--DAGQIALIDGSTYEIK-----TVLDT-GYAVHISRLSASGRYLFVIGRDGKVN-MIDLWMKEPTT 232 (567)
T ss_dssp CCCGGGEEEEEET--TTTEEEEEETTTCCEE-----EEEEC-SSCEEEEEECTTSCEEEEEETTSEEE-EEETTSSSCCE
T ss_pred ccCCCceEEEEeC--CCCeEEEEECCCCeEE-----EEEeC-CCCccceEECCCCCEEEEEcCCCeEE-EEECCCCCCcE
Confidence 3444445555443 2224668899999888 33321 22456899998 677788899999 99996 8888
Q ss_pred eEEecCCccCCEEEEEEc----CCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCccccee
Q 006825 372 KSKKKGSWFKSIRTVASS----VTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALY 447 (630)
Q Consensus 372 ~~~lk~gH~~~V~sVAfS----pdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~ 447 (630)
+.++..|. .-+.++|+ |||+++.. +...+++|.++|..+.+.....
T Consensus 233 v~~i~~G~--~P~~ia~s~~~~pDGk~l~v----------------------------~n~~~~~v~ViD~~t~~~~~~i 282 (567)
T 1qks_A 233 VAEIKIGS--EARSIETSKMEGWEDKYAIA----------------------------GAYWPPQYVIMDGETLEPKKIQ 282 (567)
T ss_dssp EEEEECCS--EEEEEEECCSTTCTTTEEEE----------------------------EEEETTEEEEEETTTCCEEEEE
T ss_pred eEEEecCC--CCceeEEccccCCCCCEEEE----------------------------EEccCCeEEEEECCCCcEEEEE
Confidence 88877432 35789999 69998863 3334577889998766532211
Q ss_pred eeeEe--c---ccCc-CEEEEEEccCCC-EEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEE
Q 006825 448 KCQEI--Q---AHNG-SIWSIKFSLDGR-YLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSP 520 (630)
Q Consensus 448 ~v~tL--~---gHt~-~V~sVaFSpDG~-~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~las 520 (630)
.+... . .|.. .+..|.+++++. ++++...+|.|.++|..+........ .........+.|+|+++++++
T Consensus 283 ~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~----i~~~~~~~d~~~~pdgr~~~v 358 (567)
T 1qks_A 283 STRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTE----ISAERFLHDGGLDGSHRYFIT 358 (567)
T ss_dssp ECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEE----EECCSSEEEEEECTTSCEEEE
T ss_pred eccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeee----eeccccccCceECCCCCEEEE
Confidence 11110 0 1333 688899999765 55566677999999997654332211 122234667899999998877
Q ss_pred ee-CCCeeeeecccccccccccccCccccccEEEeC-CCCceEEecc-----CCCCEEEEEEcCC-CeE-EEEE-CCCcE
Q 006825 521 KH-LDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQG-----HLDDVLDLSWSKS-QHL-LSSS-MDKTV 590 (630)
Q Consensus 521 gs-~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~G-----Hs~~V~sLafSPd-~~L-aSgS-~DgtV 590 (630)
+. .+..| .+++. +++.+..+.- |.+.-..+ ++|+ +.+ +++. .+++|
T Consensus 359 a~~~sn~V-----------------------~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~V 414 (567)
T 1qks_A 359 AANARNKL-----------------------VVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSV 414 (567)
T ss_dssp EEGGGTEE-----------------------EEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEE
T ss_pred EeCCCCeE-----------------------EEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeE
Confidence 65 45666 56666 5555554432 43222222 5787 444 4554 47899
Q ss_pred EEEeCCC-------CcEEEEEe-cCCceEEEE-cCCCcEEEEe
Q 006825 591 RLWHLSS-------KTCLKIFS-HSDYDISLV-DRLMLRFAYG 624 (630)
Q Consensus 591 rIWDl~t-------g~~l~t~~-H~~~V~sVa-s~~~~~lAsg 624 (630)
.++|+.+ .+.++++. ....-.-|. +|++..+-.+
T Consensus 415 svid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~ 457 (567)
T 1qks_A 415 ALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVD 457 (567)
T ss_dssp EEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEE
T ss_pred EEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEe
Confidence 9999988 67888887 322222344 6666555544
No 202
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.93 E-value=1e-07 Score=109.33 Aligned_cols=245 Identities=10% Similarity=-0.029 Sum_probs=147.2
Q ss_pred eeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCcc
Q 006825 261 MSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSP 340 (630)
Q Consensus 261 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~ 340 (630)
+++||||++|+...+ ..+.+...++|++|++|+.......+.. .....|- .|+.|
T Consensus 134 ~~~SpDg~~lAy~~~---------~~G~~~~~i~v~dl~tg~~~~~~~~~~k-~~~~~Ws--Dg~~l------------- 188 (693)
T 3iuj_A 134 LSFSRDGRILAYSLS---------LAGSDWREIHLMDVESKQPLETPLKDVK-FSGISWL--GNEGF------------- 188 (693)
T ss_dssp EEECTTSSEEEEEEE---------CSSCCEEEEEEEETTTCSEEEEEEEEEE-SCCCEEE--TTTEE-------------
T ss_pred EEECCCCCEEEEEEe---------cCCCceEEEEEEECCCCCCCccccCCce-eccEEEe--CCCEE-------------
Confidence 689999999965553 3446667899999999875432111000 0112344 34444
Q ss_pred ceeEEEeecceEeecCC-------------CccEecccCCCCce--eEEecC-C-ccCCEEEEEEcCCCCeEEeecCCCC
Q 006825 341 IVQELMRRQNVEEGNKD-------------SFDLNNNGSSGGGM--KSKKKG-S-WFKSIRTVASSVTGHKERRSSDERD 403 (630)
Q Consensus 341 ~V~~Lafs~~laSgS~D-------------~tvr~vWD~~tG~~--~~~lk~-g-H~~~V~sVAfSpdG~~lasgS~D~d 403 (630)
+-++.| ..|. +|++.++.. ...+.. . |...+.++++||||++|+-.+.
T Consensus 189 -----------~y~~~~~~~~~~~~~~~~~~~v~-~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~--- 253 (693)
T 3iuj_A 189 -----------FYSSYDKPDGSELSARTDQHKVY-FHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAA--- 253 (693)
T ss_dssp -----------EEEESSCCC-------CCCCEEE-EEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEE---
T ss_pred -----------EEEEecCcccccccccCCCcEEE-EEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEc---
Confidence 222222 3467 888887653 222221 3 5566889999999998753211
Q ss_pred CccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCE-EEEEeCC---Cc
Q 006825 404 TSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRY-LASAGED---CV 479 (630)
Q Consensus 404 t~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~-LASgS~D---gt 479 (630)
.+.....|++|++..++. ....|..+...+... |+++|.. ++....| +.
T Consensus 254 ----------------------~~~~~~~i~~~d~~~~~~----~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~ 306 (693)
T 3iuj_A 254 ----------------------NSTSGNRLYVKDLSQENA----PLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRR 306 (693)
T ss_dssp ----------------------SSSSCCEEEEEETTSTTC----CCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCE
T ss_pred ----------------------cCCCCcEEEEEECCCCCC----ceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCE
Confidence 112235799999876532 234566777777666 6666654 4454444 57
Q ss_pred EEEEECcCCce--eeeeecccccCcccceEEEEECCCCCEEEEeeC-CCeeeeecccccccccccccCccccccEEEeCC
Q 006825 480 IHVWQVVESER--KGELLEKQEDGHLNMLLLANGSPEPTSLSPKHL-DNHLEKKRRGRSINRKSLSLDHMVVPETVFALS 556 (630)
Q Consensus 480 IrVWDl~tg~~--~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~-Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdls 556 (630)
|.+|++.++.. ...+ ..|...+. .|++++..|+.... ++.-.+ .+|++.
T Consensus 307 l~~~d~~~~~~~~~~~l-----~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l---------------------~~~d~~ 358 (693)
T 3iuj_A 307 LVTVDAANPGPAHWRDL-----IPERQQVL--TVHSGSGYLFAEYMVDATARV---------------------EQFDYE 358 (693)
T ss_dssp EEEEETTSCCGGGCEEE-----ECCCSSCE--EEEEETTEEEEEEEETTEEEE---------------------EEECTT
T ss_pred EEEEeCCCCCccccEEE-----ecCCCCEE--EEEEECCEEEEEEEECCeeEE---------------------EEEECC
Confidence 99999987654 2333 23333343 78888887776544 332111 667776
Q ss_pred CCceEEec-cCCCCEEEEEEcCC-CeEEEEECC----CcEEEEeCCCCcE
Q 006825 557 DKPICSFQ-GHLDDVLDLSWSKS-QHLLSSSMD----KTVRLWHLSSKTC 600 (630)
Q Consensus 557 gk~l~tL~-GHs~~V~sLafSPd-~~LaSgS~D----gtVrIWDl~tg~~ 600 (630)
+.....+. .+...|..+.++++ ..|+....+ ++|.+||+.+++.
T Consensus 359 g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 359 GKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp SCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred CCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 66666654 34456778888887 544433333 8999999988764
No 203
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.93 E-value=1.3e-08 Score=109.63 Aligned_cols=166 Identities=10% Similarity=-0.015 Sum_probs=119.4
Q ss_pred ceeEEEeec---ceEeecCCCccEecccCCCCc----------eeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccc
Q 006825 341 IVQELMRRQ---NVEEGNKDSFDLNNNGSSGGG----------MKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSE 407 (630)
Q Consensus 341 ~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~----------~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~ 407 (630)
.+..|++++ .+++|+.+ .++ +|+..... ...... .+.+ |..|+| ||++|+.
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~-v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v---------- 102 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAV-VGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLV---------- 102 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEE-EEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEE----------
T ss_pred cccEEEEcCCCCEEEEeCCC-EEE-EEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEE----------
Confidence 578899998 68888887 455 68754333 111122 3555 888888 7776642
Q ss_pred cCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcC
Q 006825 408 KGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVE 487 (630)
Q Consensus 408 ~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~t 487 (630)
+ .++.|++||+.... ....+..|...|.++.+.+.. +|.+..||+|.+||+.+
T Consensus 103 -------------------~-~~~~l~v~dv~sl~-----~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~ 155 (388)
T 1xip_A 103 -------------------S-TRNALYSLDLEELS-----EFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRT 155 (388)
T ss_dssp -------------------E-ESSEEEEEESSSTT-----CEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTT
T ss_pred -------------------E-cCCcEEEEEchhhh-----ccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccC
Confidence 3 56789999986543 233456788889998887653 88899999999999987
Q ss_pred CceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCc---eEEe-
Q 006825 488 SERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKP---ICSF- 563 (630)
Q Consensus 488 g~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~---l~tL- 563 (630)
+.... +...|.+++|+|+| ++.+..|+++ .+|+..+.. .+++
T Consensus 156 ~~~~~---------~~~~Vs~v~WSpkG--~~vg~~dg~i-----------------------~~~~~~~~~~~~k~~I~ 201 (388)
T 1xip_A 156 KSTKQ---------LAQNVTSFDVTNSQ--LAVLLKDRSF-----------------------QSFAWRNGEMEKQFEFS 201 (388)
T ss_dssp CCEEE---------EEESEEEEEECSSE--EEEEETTSCE-----------------------EEEEEETTEEEEEEEEC
T ss_pred Ccccc---------ccCCceEEEEcCCc--eEEEEcCCcE-----------------------EEEcCCCccccccceec
Confidence 76532 33579999999999 5678899999 566554444 3444
Q ss_pred -----c---cCCCCEEEEEEcCC-CeEEE
Q 006825 564 -----Q---GHLDDVLDLSWSKS-QHLLS 583 (630)
Q Consensus 564 -----~---GHs~~V~sLafSPd-~~LaS 583 (630)
. +|...|.+|.|.++ .+|++
T Consensus 202 ~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 202 LPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp CCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred CCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 2 47888999999998 66665
No 204
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.92 E-value=3.4e-07 Score=98.67 Aligned_cols=228 Identities=9% Similarity=-0.022 Sum_probs=142.1
Q ss_pred cceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEE
Q 006825 340 PIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSA 416 (630)
Q Consensus 340 ~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa 416 (630)
.....|++.+ ..++...+..|+ +||..++....... .. .... ++|+++|+++..+..+
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~-~id~~~g~~~~~~~-~~-~~~~-ia~~~~g~~l~~~d~~--------------- 191 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVR-LISVDDNKVTTVHP-GF-KGGK-PAVTKDKQRVYSIGWE--------------- 191 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEE-EEETTTTEEEEEEE-TC-CBCB-CEECTTSSEEEEEBSS---------------
T ss_pred CCceEEEEeCCCCEEEEecCCCcEE-EEECCCCEEEEeec-cC-CCCc-eeEecCCCcEEEEecC---------------
Confidence 3567788877 456666778899 99998887766555 32 2223 8899988766432211
Q ss_pred eecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecc-cCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeee
Q 006825 417 TDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQA-HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELL 495 (630)
Q Consensus 417 ~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~g-Ht~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~ 495 (630)
....|++|+...... ...+..+.. +...+.+++|+|++..|+.+..++.|+.||..++... .+.
T Consensus 192 ------------~~~~I~~~d~~~~~~--~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~-~~~ 256 (409)
T 3hrp_A 192 ------------GTHTVYVYMKASGWA--PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVT-LIK 256 (409)
T ss_dssp ------------TTCEEEEEEGGGTTC--EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEE-EEE
T ss_pred ------------CCceEEEEEcCCCce--eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEE-EEe
Confidence 111678887654321 011111222 4567889999994444444777889999999876532 110
Q ss_pred cccccCcccce-E-EEEECCC-CCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCC-----
Q 006825 496 EKQEDGHLNML-L-LANGSPE-PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHL----- 567 (630)
Q Consensus 496 ~~~~~gh~~~V-~-svafSpd-g~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs----- 567 (630)
.....++.... . .++|+|+ +.++++....+.| ..|+..++ +..+.|+.
T Consensus 257 ~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I-----------------------~~~~~~g~-~~~~~g~~~~~g~ 312 (409)
T 3hrp_A 257 QLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSV-----------------------YKITPDGE-CEWFCGSATQKTV 312 (409)
T ss_dssp ECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEE-----------------------EEECTTCC-EEEEEECTTCCSC
T ss_pred cccccCCCCCCccccEEEeCCCCEEEEEeCCCCEE-----------------------EEEecCCC-EEEEEeCCCCCCc
Confidence 00012222222 3 8999995 6777776667777 44444443 33333332
Q ss_pred ----------CCEEEEEEcCC-CeEEEEE-CCCcEEEEeCCCCcEEEEEec---------------CCceEEEE-cCCCc
Q 006825 568 ----------DDVLDLSWSKS-QHLLSSS-MDKTVRLWHLSSKTCLKIFSH---------------SDYDISLV-DRLML 619 (630)
Q Consensus 568 ----------~~V~sLafSPd-~~LaSgS-~DgtVrIWDl~tg~~l~t~~H---------------~~~V~sVa-s~~~~ 619 (630)
.....++|+|+ .++++-+ .++.|+.|++.+++......+ -.....|+ ++++.
T Consensus 313 ~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~ 392 (409)
T 3hrp_A 313 QDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGG 392 (409)
T ss_dssp BCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSE
T ss_pred CCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCC
Confidence 35789999999 7777888 899999999888875443334 24678888 77766
Q ss_pred EEEEec
Q 006825 620 RFAYGA 625 (630)
Q Consensus 620 ~lAsgs 625 (630)
+++++.
T Consensus 393 lyVad~ 398 (409)
T 3hrp_A 393 YWIAEA 398 (409)
T ss_dssp EEEEES
T ss_pred EEEEEC
Confidence 666554
No 205
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.89 E-value=3e-06 Score=90.25 Aligned_cols=265 Identities=6% Similarity=-0.119 Sum_probs=147.2
Q ss_pred eeEEEEcCCCceEeeecceeee-cCccceeEEEeec---ceEeec----------CCCccEecccCCCCceeEEecCC--
Q 006825 315 WKKVKEVGTGRQLTIEEFEMCV-GHSPIVQELMRRQ---NVEEGN----------KDSFDLNNNGSSGGGMKSKKKGS-- 378 (630)
Q Consensus 315 ~~~l~dv~TG~~lt~eef~~l~-GHs~~V~~Lafs~---~laSgS----------~D~tvr~vWD~~tG~~~~~lk~g-- 378 (630)
+..+.|..|++.+ .++. |.. ..++++| .|..+. .+.++. +||..+++.+.++..+
T Consensus 48 ~v~v~D~~t~~~~-----~~i~~g~~---p~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~-viD~~t~~~~~~i~~~~~ 118 (373)
T 2mad_H 48 QQWVLDAGSGSIL-----GHVNGGFL---PNPVAAHSGSEFALASTSFSRIAKGKRTDYVE-VFDPVTFLPIADIELPDA 118 (373)
T ss_pred EEEEEECCCCeEE-----EEecCCCC---CCeEECCCCCEEEEEeccccccccCCCCCeEE-EEECCCCcEEEEEECCCc
Confidence 4567777777766 3332 322 2888888 333332 467788 9999998887766432
Q ss_pred ----ccCCEEEEEEcCCCCeEEeecCC-CCCcc-ccCCcce-E----------EEeecCCCeEEEecCCcEEEEEeCCCC
Q 006825 379 ----WFKSIRTVASSVTGHKERRSSDE-RDTSS-EKGGRRS-S----------SATDDSQDVSFHGQERVRVRQYGKSCK 441 (630)
Q Consensus 379 ----H~~~V~sVAfSpdG~~lasgS~D-~dt~s-~~gh~~~-V----------sa~~~s~d~l~Sgs~Dg~VriWd~~~~ 441 (630)
+...-..++|+|||++|...+.. .+... .. .... + .........+++.+.|+++.+++. ++
T Consensus 119 ~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g 196 (373)
T 2mad_H 119 PRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDH-AG 196 (373)
T ss_pred cccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEEEEeCCCceEEEEcCCCCEEEEEC-CC
Confidence 01233478999999998876542 21100 11 1111 1 111222233566678899999988 55
Q ss_pred cccceeeeeEecccCcC-EEEEEEccCCCEEEEEeCCCcEEEEECcCCcee--eeeecccc----cC-cccceEEEEECC
Q 006825 442 DLTALYKCQEIQAHNGS-IWSIKFSLDGRYLASAGEDCVIHVWQVVESERK--GELLEKQE----DG-HLNMLLLANGSP 513 (630)
Q Consensus 442 el~~~~~v~tL~gHt~~-V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~--~~l~~~~~----~g-h~~~V~svafSp 513 (630)
+.........+.....+ .....|.+++..++-.+..+.|.+.|+...... ..+..... .+ .......++++|
T Consensus 197 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~ 276 (373)
T 2mad_H 197 GAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLK 276 (373)
T ss_pred cEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECC
Confidence 42210000000011222 234567776655444457889999998754321 11100000 00 112234467888
Q ss_pred CCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-C-eEEEEE-CCCc
Q 006825 514 EPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-Q-HLLSSS-MDKT 589 (630)
Q Consensus 514 dg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~-~LaSgS-~Dgt 589 (630)
++..+......+.- +.. ....+.+ .+++. +++.+.++.. ......++|+|| + +|+++. .+++
T Consensus 277 d~~~lyV~~~~~~~--~~~--------~~~~~~V---~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~ 342 (373)
T 2mad_H 277 SSDGIYLLTSEQSA--WKL--------HAAAKEV---TSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEV 342 (373)
T ss_pred CCCEEEEEeccCCc--ccc--------cCCCCeE---EEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCe
Confidence 87766665432100 000 0000011 56666 6677777753 235789999999 6 677777 5999
Q ss_pred EEEEeCCCCcEEEEE
Q 006825 590 VRLWHLSSKTCLKIF 604 (630)
Q Consensus 590 VrIWDl~tg~~l~t~ 604 (630)
|.+||+.+++.++++
T Consensus 343 V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 343 LHIYDAGAGDQDQST 357 (373)
T ss_pred EEEEECCCCCEEeee
Confidence 999999999999884
No 206
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.86 E-value=5.2e-07 Score=101.80 Aligned_cols=193 Identities=10% Similarity=-0.038 Sum_probs=133.7
Q ss_pred eEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCC
Q 006825 351 VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQER 430 (630)
Q Consensus 351 laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~D 430 (630)
+++...++++. ++|..+++.+.++..|. .+..++|+|||+++. .++.+
T Consensus 170 ~V~~~~~~~V~-viD~~t~~v~~~i~~g~--~p~~v~~SpDGr~ly-----------------------------v~~~d 217 (567)
T 1qks_A 170 SVTLRDAGQIA-LIDGSTYEIKTVLDTGY--AVHISRLSASGRYLF-----------------------------VIGRD 217 (567)
T ss_dssp EEEETTTTEEE-EEETTTCCEEEEEECSS--CEEEEEECTTSCEEE-----------------------------EEETT
T ss_pred EEEeCCCCeEE-EEECCCCeEEEEEeCCC--CccceEECCCCCEEE-----------------------------EEcCC
Confidence 67778889999 99999999998887443 466899999999774 33457
Q ss_pred cEEEEEeCC--CCcccceeeeeEecccCcCEEEEEEc----cCCCEEEEEeCC-CcEEEEECcCCceeeeeecccc--c-
Q 006825 431 VRVRQYGKS--CKDLTALYKCQEIQAHNGSIWSIKFS----LDGRYLASAGED-CVIHVWQVVESERKGELLEKQE--D- 500 (630)
Q Consensus 431 g~VriWd~~--~~el~~~~~v~tL~gHt~~V~sVaFS----pDG~~LASgS~D-gtIrVWDl~tg~~~~~l~~~~~--~- 500 (630)
+.|.+||+. +.+ .+.++..... ...|+|+ |||++|+++.+. ++|.|+|..+.+.+..+..... .
T Consensus 218 g~V~viD~~~~t~~-----~v~~i~~G~~-P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~ 291 (567)
T 1qks_A 218 GKVNMIDLWMKEPT-----TVAEIKIGSE-ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDE 291 (567)
T ss_dssp SEEEEEETTSSSCC-----EEEEEECCSE-EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTT
T ss_pred CeEEEEECCCCCCc-----EeEEEecCCC-CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccccccc
Confidence 789999985 433 3445554333 5789999 699988887654 8999999999888877542211 1
Q ss_pred --Ccc-cceEEEEECCCCCEEEE-eeCCCeeeeecccccccccccccCccccccEEEeCCC-C--ceEEeccCCCCEEEE
Q 006825 501 --GHL-NMLLLANGSPEPTSLSP-KHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD-K--PICSFQGHLDDVLDL 573 (630)
Q Consensus 501 --gh~-~~V~svafSpdg~~las-gs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsg-k--~l~tL~GHs~~V~sL 573 (630)
.|. ..+..+.+++++..++. ....+.| .+++... + .+..+ .......++
T Consensus 292 ~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v-----------------------~~vd~~~~~~~~v~~i-~~~~~~~d~ 347 (567)
T 1qks_A 292 QEYHPEPRVAAILASHYRPEFIVNVKETGKI-----------------------LLVDYTDLNNLKTTEI-SAERFLHDG 347 (567)
T ss_dssp CCEESCCCEEEEEECSSSSEEEEEETTTTEE-----------------------EEEETTCSSEEEEEEE-ECCSSEEEE
T ss_pred ccccCCCceEEEEEcCCCCEEEEEecCCCeE-----------------------EEEecCCCccceeeee-eccccccCc
Confidence 122 25677888887655444 3444666 3444321 1 11222 234456789
Q ss_pred EEcCC-CeEEEEE-CCCcEEEEeCCCCcEEEEEe
Q 006825 574 SWSKS-QHLLSSS-MDKTVRLWHLSSKTCLKIFS 605 (630)
Q Consensus 574 afSPd-~~LaSgS-~DgtVrIWDl~tg~~l~t~~ 605 (630)
.|+|+ ++|+.+. .+++|.+||+.+++.+..+.
T Consensus 348 ~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~ 381 (567)
T 1qks_A 348 GLDGSHRYFITAANARNKLVVIDTKEGKLVAIED 381 (567)
T ss_dssp EECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred eECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEe
Confidence 99999 7776555 68999999999998876653
No 207
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.82 E-value=2.4e-07 Score=96.55 Aligned_cols=224 Identities=7% Similarity=-0.093 Sum_probs=135.7
Q ss_pred cCccceeEEEeec---ceEeecC-----CCccEecccCCCCceeEEecC-----CccCCEEEEEEcCCCCeEEeecCCCC
Q 006825 337 GHSPIVQELMRRQ---NVEEGNK-----DSFDLNNNGSSGGGMKSKKKG-----SWFKSIRTVASSVTGHKERRSSDERD 403 (630)
Q Consensus 337 GHs~~V~~Lafs~---~laSgS~-----D~tvr~vWD~~tG~~~~~lk~-----gH~~~V~sVAfSpdG~~lasgS~D~d 403 (630)
+|...+..|++.+ ..+.-+. +..+. +||..+|+.++++.. .+...+..+++++++.++
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~-~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~-------- 134 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLV-AWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFV-------- 134 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEE-EEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEE--------
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEE-EEECCCCeEEEEEECChhhcccccccceEEEecCCCEE--------
Confidence 5667899999987 2232222 56788 899999987776652 123456778888754322
Q ss_pred CccccCCcceEEEeecCCCeEEEec---CCcEEEEEeCCCCcccceeeeeEecccCcCEE-EEEEccCCCEEEEEeCCCc
Q 006825 404 TSSEKGGRRSSSATDDSQDVSFHGQ---ERVRVRQYGKSCKDLTALYKCQEIQAHNGSIW-SIKFSLDGRYLASAGEDCV 479 (630)
Q Consensus 404 t~s~~gh~~~Vsa~~~s~d~l~Sgs---~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~-sVaFSpDG~~LASgS~Dgt 479 (630)
+++-. .+..|.+||..+++. .+.+.+|..... ...|.++|..|.+.+.|++
T Consensus 135 --------------------yvtd~~~~~~~~i~v~d~~~g~~-----~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~ 189 (343)
T 2qe8_A 135 --------------------YISDPAPDDKAALIRVDLQTGLA-----ARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGT 189 (343)
T ss_dssp --------------------EEEECCSGGGCEEEEEETTTCCE-----EEECTTCTTTSCCSCCCEETTEECBEECTTSC
T ss_pred --------------------EEEcCccCCCCeEEEEECCCCCE-----EEEecCCCcccccccceeECCEEEEeccCCCc
Confidence 12222 466899999876642 344555533211 1455668888888889998
Q ss_pred EEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCC-eeeeecccccccccccccCccccccEEEeCCCC
Q 006825 480 IHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN-HLEKKRRGRSINRKSLSLDHMVVPETVFALSDK 558 (630)
Q Consensus 480 IrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg-~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk 558 (630)
++.|.. .+..++++|+++.|+.+...+ .+ |........ +..+....++ .
T Consensus 190 ~~~~~~-------------------~~~gia~s~dg~~ly~~~~~~~~l--~~~~~~~~~-----~~~~~~~~~~----~ 239 (343)
T 2qe8_A 190 VIRPHL-------------------GVNGIVLDAENEWLYLSPMHSTSM--YRIKSADLS-----NLQLTDAELG----S 239 (343)
T ss_dssp EECCCC-------------------CEEEEEECTTSCEEEEEESSCSEE--EEEEHHHHT-----CTTCCHHHHH----T
T ss_pred eeceec-------------------ccceeEeccCCCEEEEEeCCCCeE--EEEEHHHhc-----CCCCChhhhh----c
Confidence 877641 245689999998887776554 33 111100000 0000000000 0
Q ss_pred ceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe--cCCceEEEE-cCCCcEEEEec
Q 006825 559 PICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYDISLV-DRLMLRFAYGA 625 (630)
Q Consensus 559 ~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~--H~~~V~sVa-s~~~~~lAsgs 625 (630)
.+ ...++......+++.++ .++++...++.|.+||..+|+...... +...+++++ .+.+..+++..
T Consensus 240 ~~-~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~ 309 (343)
T 2qe8_A 240 KI-ERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCN 309 (343)
T ss_dssp TC-EEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEEC
T ss_pred ce-EecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeC
Confidence 01 12244445677999999 888888889999999986776544443 356788999 66676666654
No 208
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.81 E-value=4e-07 Score=94.41 Aligned_cols=207 Identities=10% Similarity=-0.086 Sum_probs=132.9
Q ss_pred cCCCccEecccCCCCceeEEecC-----CccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecC
Q 006825 355 NKDSFDLNNNGSSGGGMKSKKKG-----SWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQE 429 (630)
Q Consensus 355 S~D~tvr~vWD~~tG~~~~~lk~-----gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~ 429 (630)
+.++++. ++|.+|++....+.. ........+++.. ++ ..++...
T Consensus 14 ~~~~~l~-~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~-~~-----------------------------lyv~~~~ 62 (328)
T 3dsm_A 14 YSNATLS-YYDPATCEVENEVFYRANGFKLGDVAQSMVIRD-GI-----------------------------GWIVVNN 62 (328)
T ss_dssp SCCBEEE-EEETTTTEEECSHHHHHHSSCCBSCEEEEEEET-TE-----------------------------EEEEEGG
T ss_pred CCCceEE-EEECCCCEEhhhhHhhhcCcccCccceEEEEEC-CE-----------------------------EEEEEcC
Confidence 4578898 999999986654320 1112344455422 11 1234445
Q ss_pred CcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEE
Q 006825 430 RVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLA 509 (630)
Q Consensus 430 Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~sv 509 (630)
+++|.+||..+.+. +.++. .......|+|+++++++++...++.|.+||+.+++....+......+.......+
T Consensus 63 ~~~v~viD~~t~~~-----~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i 136 (328)
T 3dsm_A 63 SHVIFAIDINTFKE-----VGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQM 136 (328)
T ss_dssp GTEEEEEETTTCCE-----EEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCE
T ss_pred CCEEEEEECcccEE-----EEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceE
Confidence 68899999987753 34453 3467899999999976666658999999999998876664321111111133345
Q ss_pred EECCCCCEEEEee-CCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEEC
Q 006825 510 NGSPEPTSLSPKH-LDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSM 586 (630)
Q Consensus 510 afSpdg~~lasgs-~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~ 586 (630)
++ .+++++++.. .++.| .++++ +++.+.++... .....++++|+ ++++++..
T Consensus 137 ~~-~~~~lyv~~~~~~~~v-----------------------~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~ 191 (328)
T 3dsm_A 137 VQ-YGKYVYVNCWSYQNRI-----------------------LKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDG 191 (328)
T ss_dssp EE-ETTEEEEEECTTCCEE-----------------------EEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCC
T ss_pred EE-ECCEEEEEcCCCCCEE-----------------------EEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECC
Confidence 55 3455555543 36677 67776 56666666532 34578899998 65555555
Q ss_pred C----------CcEEEEeCCCCcEEEEEe--cCCceEEEE-cCCCcEEEE
Q 006825 587 D----------KTVRLWHLSSKTCLKIFS--HSDYDISLV-DRLMLRFAY 623 (630)
Q Consensus 587 D----------gtVrIWDl~tg~~l~t~~--H~~~V~sVa-s~~~~~lAs 623 (630)
+ +.|.+||..+++.+.++. ....+..++ ++++..+..
T Consensus 192 ~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv 241 (328)
T 3dsm_A 192 GYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYW 241 (328)
T ss_dssp BCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEE
T ss_pred CccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEE
Confidence 4 799999999999888886 245788888 766555443
No 209
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.81 E-value=3.5e-06 Score=87.19 Aligned_cols=227 Identities=9% Similarity=-0.028 Sum_probs=138.1
Q ss_pred EEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec--ceEeecCCCccEecccCCCCc
Q 006825 293 CLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ--NVEEGNKDSFDLNNNGSSGGG 370 (630)
Q Consensus 293 ~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~--~laSgS~D~tvr~vWD~~tG~ 370 (630)
.-.|+.+++..+++...+ + ....++..+|+...+ .+...|..+++.+ .+..++.+ .+. +||..+|+
T Consensus 53 gp~~~~~~~~l~~~d~~~--~-~i~~~d~~~~~~~~~-------~~~~~v~~i~~~~dg~l~v~~~~-gl~-~~d~~~g~ 120 (326)
T 2ghs_A 53 GPTFDPASGTAWWFNILE--R-ELHELHLASGRKTVH-------ALPFMGSALAKISDSKQLIASDD-GLF-LRDTATGV 120 (326)
T ss_dssp EEEEETTTTEEEEEEGGG--T-EEEEEETTTTEEEEE-------ECSSCEEEEEEEETTEEEEEETT-EEE-EEETTTCC
T ss_pred CCeEeCCCCEEEEEECCC--C-EEEEEECCCCcEEEE-------ECCCcceEEEEeCCCeEEEEECC-CEE-EEECCCCc
Confidence 456777667666665432 2 245667777654311 1124688888887 33333443 477 89998887
Q ss_pred eeEEecC--C-ccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCccccee
Q 006825 371 MKSKKKG--S-WFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALY 447 (630)
Q Consensus 371 ~~~~lk~--g-H~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~ 447 (630)
....... + ....++.++++|+|++.++...+. . ....+.|..++ .+++
T Consensus 121 ~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~------------------~-----~~~~~~l~~~~--~g~~---- 171 (326)
T 2ghs_A 121 LTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRK------------------A-----ETGAGSIYHVA--KGKV---- 171 (326)
T ss_dssp EEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETT------------------C-----CTTCEEEEEEE--TTEE----
T ss_pred EEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCc------------------C-----CCCceEEEEEe--CCcE----
Confidence 5433221 1 124688999999998665322110 0 01123455555 2321
Q ss_pred eeeEecccCcCEEEEEEccCCCEEEE-EeCCCcEEEEECc--CC-cee--eeeecccccCcccceEEEEECCCCCEEEEe
Q 006825 448 KCQEIQAHNGSIWSIKFSLDGRYLAS-AGEDCVIHVWQVV--ES-ERK--GELLEKQEDGHLNMLLLANGSPEPTSLSPK 521 (630)
Q Consensus 448 ~v~tL~gHt~~V~sVaFSpDG~~LAS-gS~DgtIrVWDl~--tg-~~~--~~l~~~~~~gh~~~V~svafSpdg~~lasg 521 (630)
..+..+......++|+|||+.|+. ...++.|.+|++. ++ ... ..+. .+.........+++.++|.++++.
T Consensus 172 --~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~--~~~~~~~~p~gi~~d~~G~lwva~ 247 (326)
T 2ghs_A 172 --TKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFI--DSTGIKGGMDGSVCDAEGHIWNAR 247 (326)
T ss_dssp --EEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEE--ECTTSSSEEEEEEECTTSCEEEEE
T ss_pred --EEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEE--ECCCCCCCCCeeEECCCCCEEEEE
Confidence 122233446789999999986644 4567899999986 55 321 1111 112233456789999999988877
Q ss_pred eCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEc-CC-CeE-EEEECC
Q 006825 522 HLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWS-KS-QHL-LSSSMD 587 (630)
Q Consensus 522 s~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafS-Pd-~~L-aSgS~D 587 (630)
..++.| .+|+..++.+..+..+...+++++|. ++ +.| ++...+
T Consensus 248 ~~~~~v-----------------------~~~d~~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 248 WGEGAV-----------------------DRYDTDGNHIARYEVPGKQTTCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp ETTTEE-----------------------EEECTTCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred eCCCEE-----------------------EEECCCCCEEEEEECCCCCcEEEEEecCCCCEEEEEecCC
Confidence 666667 67777777778887777789999998 87 655 444444
No 210
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.78 E-value=9.3e-07 Score=88.93 Aligned_cols=180 Identities=8% Similarity=0.014 Sum_probs=115.6
Q ss_pred CcceEEEeecCCC-e-EEEecCCcEEEEEeCCCCcccceeeeeEecc-cCcCEEEEEEccCCCEEEEEeCC---------
Q 006825 410 GRRSSSATDDSQD-V-SFHGQERVRVRQYGKSCKDLTALYKCQEIQA-HNGSIWSIKFSLDGRYLASAGED--------- 477 (630)
Q Consensus 410 h~~~Vsa~~~s~d-~-l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~g-Ht~~V~sVaFSpDG~~LASgS~D--------- 477 (630)
+...+..+.+.++ + ++.+.....|.+|+.. +++.... .....+ +...+.+|+++++|+++++...+
T Consensus 69 ~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~-~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~ 146 (314)
T 1pjx_A 69 YGGIPAGCQCDRDANQLFVADMRLGLLVVQTD-GTFEEIA-KKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR 146 (314)
T ss_dssp EECCEEEEEECSSSSEEEEEETTTEEEEEETT-SCEEECC-SBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCB
T ss_pred CCCCCceEEEecCCCcEEEEECCCCEEEEeCC-CCEEEEE-eccCCCccccCCcCEEECCCCCEEEEecCcccccccccc
Confidence 3345677777777 5 5665555588999987 5432110 000111 22458999999999988887655
Q ss_pred ------CcEEEEECcCCceeeeeecccccCcccceEEEEEC----CCCCEE-EEeeCCCeeeeecccccccccccccCcc
Q 006825 478 ------CVIHVWQVVESERKGELLEKQEDGHLNMLLLANGS----PEPTSL-SPKHLDNHLEKKRRGRSINRKSLSLDHM 546 (630)
Q Consensus 478 ------gtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafS----pdg~~l-asgs~Dg~I~i~~~~~~~~~~s~s~d~~ 546 (630)
+.|..|+.. ++.. .+ ..+......++++ |+++.+ ++...++.|.+++...
T Consensus 147 ~~~~~~~~l~~~~~~-g~~~-~~-----~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~------------ 207 (314)
T 1pjx_A 147 SMQEKFGSIYCFTTD-GQMI-QV-----DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKG------------ 207 (314)
T ss_dssp TTSSSCEEEEEECTT-SCEE-EE-----EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEE------------
T ss_pred cccCCCCeEEEECCC-CCEE-Ee-----ccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCC------------
Confidence 456667654 4332 21 1223345778899 998654 4445567774333210
Q ss_pred ccccEEEeCCCC-----ceEEeccCC-CCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCC
Q 006825 547 VVPETVFALSDK-----PICSFQGHL-DDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRL 617 (630)
Q Consensus 547 i~~~~Vwdlsgk-----~l~tL~GHs-~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~ 617 (630)
.++ .+..+.++. ..+..+++.++ .++++...++.|.+||..+++.+..+. +...+.+++ +++
T Consensus 208 ---------~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~d 278 (314)
T 1pjx_A 208 ---------PAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQ 278 (314)
T ss_dssp ---------TTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTT
T ss_pred ---------CCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCC
Confidence 121 223344454 56788999999 777777789999999998888877777 768899999 777
Q ss_pred Cc
Q 006825 618 ML 619 (630)
Q Consensus 618 ~~ 619 (630)
+.
T Consensus 279 g~ 280 (314)
T 1pjx_A 279 TK 280 (314)
T ss_dssp SS
T ss_pred CC
Confidence 76
No 211
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.77 E-value=1.7e-05 Score=78.53 Aligned_cols=221 Identities=8% Similarity=-0.079 Sum_probs=137.5
Q ss_pred ccceeEEEeec---ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-----CC-cc---
Q 006825 339 SPIVQELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-----DT-SS--- 406 (630)
Q Consensus 339 s~~V~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-----dt-~s--- 406 (630)
...+..|++.+ ..++...++.+. .+|.. |+............+.++++.++|++.++..... +. +.
T Consensus 61 ~~~~~~i~~~~~g~l~v~~~~~~~v~-~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~ 138 (300)
T 2qc5_A 61 DAKVMCLIVSSLGDIWFTENGANKIG-KLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIYE 138 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEE-EECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCEEE
T ss_pred CCcceeEEECCCCCEEEEecCCCeEE-EECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCCCCEEE
Confidence 34567777766 344444567788 88887 6654322223457799999999999877765332 11 11
Q ss_pred --ccCCcceEEEeecCCCe-EE-EecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEE
Q 006825 407 --EKGGRRSSSATDDSQDV-SF-HGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHV 482 (630)
Q Consensus 407 --~~gh~~~Vsa~~~s~d~-l~-Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrV 482 (630)
.......+..+.+.+++ ++ +....+.|..|+. .+++. ...+..+...+..|++.++|+++++....+.|.+
T Consensus 139 ~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~----~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~ 213 (300)
T 2qc5_A 139 YDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLE----EYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGR 213 (300)
T ss_dssp EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE----EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred ccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEE----EeeCCCCCCCcceEEECCCCCEEEEccCCCEEEE
Confidence 12223445666666665 44 4445788999987 44321 1223345567999999999998887777788999
Q ss_pred EECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceE-
Q 006825 483 WQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPIC- 561 (630)
Q Consensus 483 WDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~- 561 (630)
|+. ++...... ...+...+..+++.++|.++++...++.| ..|+.+++...
T Consensus 214 ~~~-~g~~~~~~----~~~~~~~~~~i~~d~~g~l~v~~~~~~~i-----------------------~~~~~~g~~~~~ 265 (300)
T 2qc5_A 214 ITT-TGEISEYD----IPTPNARPHAITAGKNSEIWFTEWGANQI-----------------------GRITNDNTIQEY 265 (300)
T ss_dssp ECT-TCCEEEEE----CSSTTCCEEEEEECSTTCEEEEETTTTEE-----------------------EEECTTSCEEEE
T ss_pred EcC-CCcEEEEE----CCCCCCCceEEEECCCCCEEEeccCCCeE-----------------------EEECCCCcEEEE
Confidence 998 44433321 12345667899999999987777666777 44444333221
Q ss_pred EeccCCCCEEEEEEcCCCeEEEEECCCcEEEEeC
Q 006825 562 SFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHL 595 (630)
Q Consensus 562 tL~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl 595 (630)
.+..+...+.++++.+++.|..+... .|..+|.
T Consensus 266 ~~~~~~~~~~~i~~~~~g~l~v~~~~-~i~~~~p 298 (300)
T 2qc5_A 266 QLQTENAEPHGITFGKDGSVWFALKC-KIGKLNL 298 (300)
T ss_dssp ECCSTTCCCCCEEECTTSCEEEECSS-EEEEEEE
T ss_pred ECCccCCccceeEeCCCCCEEEEccC-ceEEeCC
Confidence 12334456889999998434444434 6666664
No 212
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.75 E-value=1.7e-06 Score=88.23 Aligned_cols=216 Identities=11% Similarity=-0.053 Sum_probs=133.3
Q ss_pred CccceeEEEeec----ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-----CC-cc-
Q 006825 338 HSPIVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-----DT-SS- 406 (630)
Q Consensus 338 Hs~~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-----dt-~s- 406 (630)
+.......+|.| .++++..++.+. .|+. +|+ ...+. .+...+..++++++|++++....+. +. +.
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~-~~~~-~g~-~~~~~-~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g~~ 118 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVL-GWRE-DGT-VDVLL-DATAFTNGNAVDAQQRLVHCEHGRRAITRSDADGQA 118 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEE-EEET-TSC-EEEEE-ESCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCE
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEE-EEeC-CCC-EEEEe-CCCCccceeeECCCCCEEEEECCCCEEEEECCCCCE
Confidence 333445555655 367777888888 8987 555 34444 4667799999999999777654432 10 11
Q ss_pred --c----cCC-cceEEEeecCCCe-EEE-----ecC-------------CcEEEEEeCCCCcccceeeeeEecccCcCEE
Q 006825 407 --E----KGG-RRSSSATDDSQDV-SFH-----GQE-------------RVRVRQYGKSCKDLTALYKCQEIQAHNGSIW 460 (630)
Q Consensus 407 --~----~gh-~~~Vsa~~~s~d~-l~S-----gs~-------------Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~ 460 (630)
+ .+. ...+..+.+.+++ ++. |.. .+.|..|+..++++. .+. +.....
T Consensus 119 ~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~------~~~-~~~~p~ 191 (305)
T 3dr2_A 119 HLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQ------RMA-DLDHPN 191 (305)
T ss_dssp EEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCE------EEE-EESSEE
T ss_pred EEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEE------EEe-cCCCCc
Confidence 0 000 1123345556666 444 332 356777877655432 122 345678
Q ss_pred EEEEccCCCEEEEEeCC------CcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccc
Q 006825 461 SIKFSLDGRYLASAGED------CVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGR 534 (630)
Q Consensus 461 sVaFSpDG~~LASgS~D------gtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~ 534 (630)
.++|+|||+.|+.+... +.|.+|++..+. +...... ..........+++.++|.++++. .++ |
T Consensus 192 gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~-~~~~~~~pdgi~~d~~G~lwv~~-~~g-v------- 260 (305)
T 3dr2_A 192 GLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHF-ASVPDGLPDGFCVDRGGWLWSSS-GTG-V------- 260 (305)
T ss_dssp EEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEE-ECCSSSCCCSEEECTTSCEEECC-SSE-E-------
T ss_pred ceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEE-EECCCCCCCeEEECCCCCEEEec-CCc-E-------
Confidence 89999999987777665 789999987554 2110000 01112334567888899866554 333 5
Q ss_pred cccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEE
Q 006825 535 SINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRL 592 (630)
Q Consensus 535 ~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrI 592 (630)
.+|+..++.+..+..+. .+..++|.|+ +.|..++.++..++
T Consensus 261 ----------------~~~~~~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 261 ----------------CVFDSDGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWML 302 (305)
T ss_dssp ----------------EEECTTSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred ----------------EEECCCCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence 67888888888887665 5899999988 77777776654443
No 213
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.75 E-value=6.7e-06 Score=85.07 Aligned_cols=206 Identities=8% Similarity=-0.092 Sum_probs=127.3
Q ss_pred eEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCC
Q 006825 351 VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQER 430 (630)
Q Consensus 351 laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~D 430 (630)
++++..++.+. .||..+++... +. +...|.+++++++|++++.. .+
T Consensus 64 ~~~d~~~~~i~-~~d~~~~~~~~-~~--~~~~v~~i~~~~dg~l~v~~------------------------------~~ 109 (326)
T 2ghs_A 64 WWFNILERELH-ELHLASGRKTV-HA--LPFMGSALAKISDSKQLIAS------------------------------DD 109 (326)
T ss_dssp EEEEGGGTEEE-EEETTTTEEEE-EE--CSSCEEEEEEEETTEEEEEE------------------------------TT
T ss_pred EEEECCCCEEE-EEECCCCcEEE-EE--CCCcceEEEEeCCCeEEEEE------------------------------CC
Confidence 45566677888 89998876543 22 23579999999998766521 12
Q ss_pred cEEEEEeCCCCcccceeeeeEec-cc-CcCEEEEEEccCCCEEEEEeCC----CcEEEEECcCCceeeeeecccccCccc
Q 006825 431 VRVRQYGKSCKDLTALYKCQEIQ-AH-NGSIWSIKFSLDGRYLASAGED----CVIHVWQVVESERKGELLEKQEDGHLN 504 (630)
Q Consensus 431 g~VriWd~~~~el~~~~~v~tL~-gH-t~~V~sVaFSpDG~~LASgS~D----gtIrVWDl~tg~~~~~l~~~~~~gh~~ 504 (630)
.|.+|+..++++..+ .... ++ ...++.++++|+|+++++...+ ....||.+.+++ ...+ ..+..
T Consensus 110 -gl~~~d~~~g~~~~~---~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~-~~~~-----~~~~~ 179 (326)
T 2ghs_A 110 -GLFLRDTATGVLTLH---AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGK-VTKL-----FADIS 179 (326)
T ss_dssp -EEEEEETTTCCEEEE---ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTE-EEEE-----EEEES
T ss_pred -CEEEEECCCCcEEEE---eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCc-EEEe-----eCCCc
Confidence 378888776653211 1111 11 2468999999999987765422 334555544443 2222 12223
Q ss_pred ceEEEEECCCCCEEEEe-eCCCeeeeecccccccccccccCccccccEEEeCCC-C-----ceEEeccCCCCEEEEEEcC
Q 006825 505 MLLLANGSPEPTSLSPK-HLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD-K-----PICSFQGHLDDVLDLSWSK 577 (630)
Q Consensus 505 ~V~svafSpdg~~lasg-s~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsg-k-----~l~tL~GHs~~V~sLafSP 577 (630)
....++|+|+++.++.+ ..++.|.+++... .++ + .+..+.++...+..+++.+
T Consensus 180 ~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~--------------------~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~ 239 (326)
T 2ghs_A 180 IPNSICFSPDGTTGYFVDTKVNRLMRVPLDA--------------------RTGLPTGKAEVFIDSTGIKGGMDGSVCDA 239 (326)
T ss_dssp SEEEEEECTTSCEEEEEETTTCEEEEEEBCT--------------------TTCCBSSCCEEEEECTTSSSEEEEEEECT
T ss_pred ccCCeEEcCCCCEEEEEECCCCEEEEEEccc--------------------ccCCcccCceEEEECCCCCCCCCeeEECC
Confidence 46789999999866544 4456663333210 012 1 1222333445567899999
Q ss_pred C-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-c-CCCcEE
Q 006825 578 S-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-D-RLMLRF 621 (630)
Q Consensus 578 d-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s-~~~~~l 621 (630)
+ .++++...++.|.+||. +++.+..+. +...+++++ . +++..+
T Consensus 240 ~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L 286 (326)
T 2ghs_A 240 EGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRL 286 (326)
T ss_dssp TSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEE
T ss_pred CCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEE
Confidence 8 66667667789999998 688888887 767899999 4 665443
No 214
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.75 E-value=1.2e-06 Score=100.43 Aligned_cols=224 Identities=11% Similarity=0.014 Sum_probs=135.6
Q ss_pred ecCccceeEEEeec---ceE-----eecCCCccEecccCCCCceeEEecCCccCCE--EEEEEcCCCCeEEeecCCCCCc
Q 006825 336 VGHSPIVQELMRRQ---NVE-----EGNKDSFDLNNNGSSGGGMKSKKKGSWFKSI--RTVASSVTGHKERRSSDERDTS 405 (630)
Q Consensus 336 ~GHs~~V~~Lafs~---~la-----SgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V--~sVAfSpdG~~lasgS~D~dt~ 405 (630)
.+|...|..+.|+| .|| .|+.+.+++ +||+.+|+.+... ...+ .+++|+ ||+.|+.++.++..
T Consensus 125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~-v~dl~tg~~~~~~----~~~~k~~~~~Ws-Dg~~l~y~~~~~~~- 197 (693)
T 3iuj_A 125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIH-LMDVESKQPLETP----LKDVKFSGISWL-GNEGFFYSSYDKPD- 197 (693)
T ss_dssp TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEE-EEETTTCSEEEEE----EEEEESCCCEEE-TTTEEEEEESSCCC-
T ss_pred CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEE-EEECCCCCCCccc----cCCceeccEEEe-CCCEEEEEEecCcc-
Confidence 45666788889999 454 456667899 9999999865532 2223 468999 99988877655310
Q ss_pred cccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecc-cCcCEEEEEEccCCCEEEEEe----CCCcE
Q 006825 406 SEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQA-HNGSIWSIKFSLDGRYLASAG----EDCVI 480 (630)
Q Consensus 406 s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~g-Ht~~V~sVaFSpDG~~LASgS----~DgtI 480 (630)
+ ..+.......+|++|++.+..... .++..... |...+..+.|+|||++|+-.. ....|
T Consensus 198 ---~------------~~~~~~~~~~~v~~~~lgt~~~~~-~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i 261 (693)
T 3iuj_A 198 ---G------------SELSARTDQHKVYFHRLGTAQEDD-RLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRL 261 (693)
T ss_dssp ----------------------CCCCEEEEEETTSCGGGC-EEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEE
T ss_pred ---c------------ccccccCCCcEEEEEECCCCcccc-eEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEE
Confidence 0 001111234579999987654221 23333444 666788999999999875433 23589
Q ss_pred EEEECcCCc-eeeeeecccccCcccceEEEEECCCCCEEEEeeC-C---CeeeeecccccccccccccCccccccEEEeC
Q 006825 481 HVWQVVESE-RKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHL-D---NHLEKKRRGRSINRKSLSLDHMVVPETVFAL 555 (630)
Q Consensus 481 rVWDl~tg~-~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~-D---g~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl 555 (630)
.+||+.++. ....+ ..+....... +++++..|+..+. + ..| .++++
T Consensus 262 ~~~d~~~~~~~~~~l-----~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l-----------------------~~~d~ 312 (693)
T 3iuj_A 262 YVKDLSQENAPLLTV-----QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRL-----------------------VTVDA 312 (693)
T ss_dssp EEEETTSTTCCCEEE-----ECSSSSCEEE-EEEETTEEEEEECTTCTTCEE-----------------------EEEET
T ss_pred EEEECCCCCCceEEE-----eCCCCceEEE-EeccCCEEEEEECCCCCCCEE-----------------------EEEeC
Confidence 999998764 23332 2333333333 4555554444332 2 223 45555
Q ss_pred C-CCc--eEEeccCCCCEEEEEEcCC-CeEEEEEC-CC--cEEEEeCCCCcEEEEEe--cCCceEEEE
Q 006825 556 S-DKP--ICSFQGHLDDVLDLSWSKS-QHLLSSSM-DK--TVRLWHLSSKTCLKIFS--HSDYDISLV 614 (630)
Q Consensus 556 s-gk~--l~tL~GHs~~V~sLafSPd-~~LaSgS~-Dg--tVrIWDl~tg~~l~t~~--H~~~V~sVa 614 (630)
. +.. ...+..|...+. .|+++ ++|+.... |+ .|++|++..+ .++.+. +...|..+.
T Consensus 313 ~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~ 377 (693)
T 3iuj_A 313 ANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK-RVREVALPGLGSVSGFN 377 (693)
T ss_dssp TSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC-EEEEECCSSSSEEEECC
T ss_pred CCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC-eeEEeecCCCceEEeee
Confidence 3 322 356777777776 88888 77766555 44 6899998754 445554 555666665
No 215
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.72 E-value=5.3e-09 Score=111.07 Aligned_cols=197 Identities=12% Similarity=0.000 Sum_probs=105.3
Q ss_pred ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecC
Q 006825 350 NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQE 429 (630)
Q Consensus 350 ~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~ 429 (630)
.++.++.|+++. .||..+|+.+.+++ . ..+.+..+..+|+. ++.++.
T Consensus 11 ~v~~gs~dg~v~-a~d~~tG~~~W~~~-~--~~~~s~p~~~~g~~-----------------------------~v~~s~ 57 (369)
T 2hz6_A 11 LLFVSTLDGSLH-AVSKRTGSIKWTLK-E--DPVLQVPTHVEEPA-----------------------------FLPDPN 57 (369)
T ss_dssp EEEEEETTSEEE-EEETTTCCEEEEEE-C--CCSCCCC-----CC-----------------------------EEECTT
T ss_pred EEEEEcCCCEEE-EEECCCCCEEEEec-C--CCceecceEcCCCE-----------------------------EEEeCC
Confidence 578889999999 99999999998887 3 34433333333322 345577
Q ss_pred CcEEEEEeCCCCcccceeeeeEecccCc-CEEE-EEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceE
Q 006825 430 RVRVRQYGKSCKDLTALYKCQEIQAHNG-SIWS-IKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLL 507 (630)
Q Consensus 430 Dg~VriWd~~~~el~~~~~v~tL~gHt~-~V~s-VaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~ 507 (630)
|+.|+.||..+++. +..+..+.. .+.+ ..+. ++..|++++.|+.|+.||..+|+.+..+ ..+.
T Consensus 58 dg~l~a~d~~tG~~-----~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~-----~~~~---- 122 (369)
T 2hz6_A 58 DGSLYTLGSKNNEG-----LTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTL-----SSAF---- 122 (369)
T ss_dssp TCCEEEC-----CC-----SEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC---------------------
T ss_pred CCEEEEEECCCCce-----eeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEe-----cCCC----
Confidence 88999999877653 122222211 1100 0111 3456788889999999999999887664 2221
Q ss_pred EEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcC----CCeEE
Q 006825 508 LANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSK----SQHLL 582 (630)
Q Consensus 508 svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSP----d~~La 582 (630)
...++|++..++.++.++.| ..|+. +|+.+..+..+. ....++.+ ++.++
T Consensus 123 ~~~~~p~~~~v~~~~~dg~v-----------------------~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~ 177 (369)
T 2hz6_A 123 ADSLSPSTSLLYLGRTEYTI-----------------------TMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHF 177 (369)
T ss_dssp ----------EEEEEEEEEE-----------------------ECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEE
T ss_pred cccccccCCEEEEEecCCEE-----------------------EEEECCCCCEEEeEeccc--ccCccccCCccccceEE
Confidence 23456678888888888888 44444 444444433211 11222333 25678
Q ss_pred EEECCCcEEEEeCCCCcEEEEEecCCceEEEE--cCCCc
Q 006825 583 SSSMDKTVRLWHLSSKTCLKIFSHSDYDISLV--DRLML 619 (630)
Q Consensus 583 SgS~DgtVrIWDl~tg~~l~t~~H~~~V~sVa--s~~~~ 619 (630)
.++.|+.|+.||..+|+.+..+....+|..+- ..++.
T Consensus 178 ~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 178 VSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGL 216 (369)
T ss_dssp EEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSC
T ss_pred EECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCce
Confidence 89999999999999999999888666665543 44554
No 216
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.62 E-value=1.3e-05 Score=86.28 Aligned_cols=231 Identities=9% Similarity=0.022 Sum_probs=135.7
Q ss_pred CCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeecCCC--ccEecccCCCCceeE
Q 006825 299 DNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGNKDS--FDLNNNGSSGGGMKS 373 (630)
Q Consensus 299 ddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS~D~--tvr~vWD~~tG~~~~ 373 (630)
.+|+.|++... ....+.++..+|+..++... ..... +++.+ .|..+..++ .+. +|+..++....
T Consensus 140 ~~g~lyv~d~~---~~~I~~id~~~g~~~~~~~~------~~~~~-ia~~~~g~~l~~~d~~~~~~I~-~~d~~~~~~~~ 208 (409)
T 3hrp_A 140 GNNTVLAYQRD---DPRVRLISVDDNKVTTVHPG------FKGGK-PAVTKDKQRVYSIGWEGTHTVY-VYMKASGWAPT 208 (409)
T ss_dssp STTEEEEEETT---TTEEEEEETTTTEEEEEEET------CCBCB-CEECTTSSEEEEEBSSTTCEEE-EEEGGGTTCEE
T ss_pred CCCCEEEEecC---CCcEEEEECCCCEEEEeecc------CCCCc-eeEecCCCcEEEEecCCCceEE-EEEcCCCceeE
Confidence 56665555442 22345667777666533211 12223 77777 466666655 566 77776665544
Q ss_pred Ee---cCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeee
Q 006825 374 KK---KGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQ 450 (630)
Q Consensus 374 ~l---k~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~ 450 (630)
++ ...+...+.++|++|++..| +....+++|+.|+..++...... ..
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~l-----------------------------yv~d~~~~I~~~d~~~~~~~~~~-~~ 258 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWL-----------------------------YFVDSNKNFGRFNVKTQEVTLIK-QL 258 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEE-----------------------------EEECTTCEEEEEETTTCCEEEEE-EC
T ss_pred EeeeccchhcCCcEEEEEeCCCCeE-----------------------------EEEECCCcEEEEECCCCCEEEEe-cc
Confidence 44 11245566778888832222 22334668999998766421100 00
Q ss_pred EecccCcCE-E-EEEEcc-CCCEEEEEeCCCcEEEEECcCCceeeeeeccc-cc---------CcccceEEEEECCCCCE
Q 006825 451 EIQAHNGSI-W-SIKFSL-DGRYLASAGEDCVIHVWQVVESERKGELLEKQ-ED---------GHLNMLLLANGSPEPTS 517 (630)
Q Consensus 451 tL~gHt~~V-~-sVaFSp-DG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~-~~---------gh~~~V~svafSpdg~~ 517 (630)
...++...- . .|+|+| ++.++++-...+.|+.|+.... ...+.... .. ........++++|+|.+
T Consensus 259 ~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~l 336 (409)
T 3hrp_A 259 ELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNF 336 (409)
T ss_dssp CCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCE
T ss_pred cccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCE
Confidence 022333333 3 999999 5777777778899999997543 22221110 00 11245778999999998
Q ss_pred EEEee-CCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccC---------------CCCEEEEEEcCC-Ce
Q 006825 518 LSPKH-LDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGH---------------LDDVLDLSWSKS-QH 580 (630)
Q Consensus 518 lasgs-~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GH---------------s~~V~sLafSPd-~~ 580 (630)
+++.. .+..| +.|++....+.++.|+ -.....|++.++ .+
T Consensus 337 yvad~~~~~~I-----------------------~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~l 393 (409)
T 3hrp_A 337 YIVDGFKGYCL-----------------------RKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGY 393 (409)
T ss_dssp EEEETTTTCEE-----------------------EEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEE
T ss_pred EEEeCCCCCEE-----------------------EEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCE
Confidence 88877 77778 4455322234444444 245789999998 77
Q ss_pred EEEEECCCcEEEEeC
Q 006825 581 LLSSSMDKTVRLWHL 595 (630)
Q Consensus 581 LaSgS~DgtVrIWDl 595 (630)
+++-...+.|+.+.+
T Consensus 394 yVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 394 WIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEEESTTCEEEEEEE
T ss_pred EEEECCCCeEEEEEe
Confidence 778888888888765
No 217
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.61 E-value=6.9e-06 Score=88.38 Aligned_cols=282 Identities=11% Similarity=0.029 Sum_probs=156.3
Q ss_pred CCCcEEEEeeec--CCCceeEEEEcCCCceEeeecceee-ecCccceeEEEeec---ceEeec----------CCCccEe
Q 006825 299 DNGKEFVVNEIQ--EDGTWKKVKEVGTGRQLTIEEFEMC-VGHSPIVQELMRRQ---NVEEGN----------KDSFDLN 362 (630)
Q Consensus 299 ddG~~~~v~e~~--~dg~~~~l~dv~TG~~lt~eef~~l-~GHs~~V~~Lafs~---~laSgS----------~D~tvr~ 362 (630)
.+|+.++|.... .......+.|..|++.+ .++ .|..+ . ++++| .|..++ .+.+|.
T Consensus 42 pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~-----~~I~vG~~P--~-va~spDG~~lyVan~~~~r~~~G~~~~~Vs- 112 (386)
T 3sjl_D 42 PDARRVYVNDPAHFAAVTQQFVIDGEAGRVI-----GMIDGGFLP--N-PVVADDGSFIAHASTVFSRIARGERTDYVE- 112 (386)
T ss_dssp CCTTEEEEEECGGGCSSEEEEEEETTTTEEE-----EEEEECSSC--E-EEECTTSSCEEEEEEEEEETTEEEEEEEEE-
T ss_pred CCCCEEEEEcCcccCCCCEEEEEECCCCeEE-----EEEECCCCC--c-EEECCCCCEEEEEcccccccccCCCCCEEE-
Confidence 556666664442 11224667788898888 333 34444 3 99999 333332 467898
Q ss_pred cccCCCCceeEEecCCc------cCCEEEEEEcCCCCeEEeecCC-CCCcc--ccCCcceEEEe---------ecCCCeE
Q 006825 363 NNGSSGGGMKSKKKGSW------FKSIRTVASSVTGHKERRSSDE-RDTSS--EKGGRRSSSAT---------DDSQDVS 424 (630)
Q Consensus 363 vWD~~tG~~~~~lk~gH------~~~V~sVAfSpdG~~lasgS~D-~dt~s--~~gh~~~Vsa~---------~~s~d~l 424 (630)
+||..|++.+.++..+- ...-..++|+|||+++...... ..... -......+..+ ......+
T Consensus 113 viD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~ 192 (386)
T 3sjl_D 113 VFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTF 192 (386)
T ss_dssp EECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEE
T ss_pred EEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCcee
Confidence 99999999888775321 1123458999999987766532 21100 00000111111 1122235
Q ss_pred EEecCCcEEEEEeCCC-CcccceeeeeEecccCcCEE-EEEEc-cCCCEEEEEeCCCcEEEEECcCCce--eeeeecc--
Q 006825 425 FHGQERVRVRQYGKSC-KDLTALYKCQEIQAHNGSIW-SIKFS-LDGRYLASAGEDCVIHVWQVVESER--KGELLEK-- 497 (630)
Q Consensus 425 ~Sgs~Dg~VriWd~~~-~el~~~~~v~tL~gHt~~V~-sVaFS-pDG~~LASgS~DgtIrVWDl~tg~~--~~~l~~~-- 497 (630)
++.+.||++.+.+... +.... .....+.--...+. ...|. ++|++++ .+.+++|.+.|+.++.. ...+...
T Consensus 193 ~~~~~DG~~~~v~~~~~g~v~~-~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~ 270 (386)
T 3sjl_D 193 FMHCRDGSLAKVAFGTEGTPEI-THTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTE 270 (386)
T ss_dssp EEEETTSCEEEEECCSSSCCEE-EECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCH
T ss_pred EEECCCCCEEEEECCCCCeEEE-eecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceecccc
Confidence 6778899998888865 33210 00001111112222 24664 6887655 56689999999976542 2211000
Q ss_pred --cccC-cccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEE
Q 006825 498 --QEDG-HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDL 573 (630)
Q Consensus 498 --~~~g-h~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sL 573 (630)
...+ .......+++++++..+.....++.- +... .....+ .++|+ +++.+.++.-- ..++.|
T Consensus 271 ~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~--~~hk--------~~~~~V---~viD~~t~kv~~~i~vg-~~~~~l 336 (386)
T 3sjl_D 271 AERADGWRPGGWQQVAYHRALDRIYLLVDQRDE--WRHK--------TASRFV---VVLDAKTGERLAKFEMG-HEIDSI 336 (386)
T ss_dssp HHHHTTEEECSSSCEEEETTTTEEEEEEEECCT--TCTT--------SCEEEE---EEEETTTCCEEEEEEEE-EEECEE
T ss_pred ccccccccCCCcceeeECCCCCeEEEEeccccc--cccC--------CCCCEE---EEEECCCCeEEEEEECC-CCcceE
Confidence 0001 01222346668887777665321100 0000 000001 45566 77777776522 268899
Q ss_pred EEcCC-C-eEEEE-ECCCcEEEEeCCCCcEEEEEe
Q 006825 574 SWSKS-Q-HLLSS-SMDKTVRLWHLSSKTCLKIFS 605 (630)
Q Consensus 574 afSPd-~-~LaSg-S~DgtVrIWDl~tg~~l~t~~ 605 (630)
+|++| + +|++. ..+++|.++|+.+++.++++.
T Consensus 337 avs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~ 371 (386)
T 3sjl_D 337 NVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN 371 (386)
T ss_dssp EECSSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred EECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEec
Confidence 99999 5 66665 459999999999999999997
No 218
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.54 E-value=6.3e-06 Score=88.09 Aligned_cols=274 Identities=7% Similarity=-0.049 Sum_probs=158.1
Q ss_pred CcEEEEeeecCCCc-eeEEEEcCCCceEeeecceee-ecCccceeEEEeec---ceEeec----------CCCccEeccc
Q 006825 301 GKEFVVNEIQEDGT-WKKVKEVGTGRQLTIEEFEMC-VGHSPIVQELMRRQ---NVEEGN----------KDSFDLNNNG 365 (630)
Q Consensus 301 G~~~~v~e~~~dg~-~~~l~dv~TG~~lt~eef~~l-~GHs~~V~~Lafs~---~laSgS----------~D~tvr~vWD 365 (630)
.+.|+.++.+.... ...+.|..|++.+ .++ .|+.+ .++|+| .+..+. .+.++. +||
T Consensus 32 ~~~yV~~~~~~~~~d~vsvID~~t~~v~-----~~i~vG~~P---~i~~spDg~~lyVan~~~~r~~~G~~~~~Vs-viD 102 (368)
T 1mda_H 32 RRSHITLPAYFAGTTENWVSCAGCGVTL-----GHSLGAFLS---LAVAGHSGSDFALASTSFARSAKGKRTDYVE-VFD 102 (368)
T ss_dssp TEEEEEECTTTCSSEEEEEEETTTTEEE-----EEEEECTTC---EEEECTTSSCEEEEEEEETTTTSSSEEEEEE-EEC
T ss_pred CeEEEECCccCCccceEEEEECCCCeEE-----EEEeCCCCC---ceEECCCCCEEEEEcccccccccCCCCCEEE-EEE
Confidence 44455555322112 4567899999988 444 56655 699998 333332 478898 999
Q ss_pred CCCCceeEEecCC-c-----cCCEEEEEEcCCCCeEEeecCC-CCCccc--cCCcceEEEeec------CCC---eEEEe
Q 006825 366 SSGGGMKSKKKGS-W-----FKSIRTVASSVTGHKERRSSDE-RDTSSE--KGGRRSSSATDD------SQD---VSFHG 427 (630)
Q Consensus 366 ~~tG~~~~~lk~g-H-----~~~V~sVAfSpdG~~lasgS~D-~dt~s~--~gh~~~Vsa~~~------s~d---~l~Sg 427 (630)
..|++.+.++..+ - ...-..++|+|||+++...... ...... -+-.. +..+.. .++ .+++.
T Consensus 103 ~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t-v~~i~v~~~~~~~p~g~~~~~~~ 181 (368)
T 1mda_H 103 PVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD-DQLTKSASCFHIHPGAAATHYLG 181 (368)
T ss_dssp TTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE-EEEEECSSCCCCEEEETTEEECC
T ss_pred CCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh-ceEEECCCceEEccCCCeEEEEE
Confidence 9999999988632 0 1223458999999988776532 111111 11111 111111 111 24556
Q ss_pred cCCcEEEEEeCCC-----CcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCc--eeeeeeccc--
Q 006825 428 QERVRVRQYGKSC-----KDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE--RKGELLEKQ-- 498 (630)
Q Consensus 428 s~Dg~VriWd~~~-----~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~--~~~~l~~~~-- 498 (630)
+.|+++.+.+... ++...... ..+.--..+. + .+++..++-.+. ++|.+.|+.... .+..+....
T Consensus 182 ~~dg~~~~vd~~~~~~~~~~v~~~~t-~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~ 255 (368)
T 1mda_H 182 SCPASLAASDLAAAPAAAGIVGAQCT-GAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESG 255 (368)
T ss_dssp CCTTSCEEEECCSSCCCCEECCCCSC-TTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTH
T ss_pred cCCCCEEEEECccccccCCeEEEEee-eeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecccc
Confidence 6777777777765 22110000 0011122343 3 566665555666 899999986532 111110000
Q ss_pred --ccC-cccceEEEEECCCCCEEEEeeC-C--------CeeeeecccccccccccccCccccccEEEeC-CCCceEEecc
Q 006825 499 --EDG-HLNMLLLANGSPEPTSLSPKHL-D--------NHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQG 565 (630)
Q Consensus 499 --~~g-h~~~V~svafSpdg~~lasgs~-D--------g~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~G 565 (630)
..+ .......++++|+++.+..+.. . ..+ .++|+ +.+.+.++..
T Consensus 256 ~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~-----------------------~ViD~~t~~vv~~i~v 312 (368)
T 1mda_H 256 RKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENT-----------------------SSVTASVGQTSGPISN 312 (368)
T ss_dssp HHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEE-----------------------EEEESSSCCEEECCEE
T ss_pred ccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCE-----------------------EEEECCCCeEEEEEEC
Confidence 000 0011112679999887776533 2 223 47777 6777777654
Q ss_pred CCCCEEEEEEcCC-C-eEEEEE-CCCcEEEEeCCCCcEEEEEecCCceEEEE
Q 006825 566 HLDDVLDLSWSKS-Q-HLLSSS-MDKTVRLWHLSSKTCLKIFSHSDYDISLV 614 (630)
Q Consensus 566 Hs~~V~sLafSPd-~-~LaSgS-~DgtVrIWDl~tg~~l~t~~H~~~V~sVa 614 (630)
.. ....|+|+|| + ++++.. .+++|.++|+.+++.++++.-....+.++
T Consensus 313 g~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~P~~i~ 363 (368)
T 1mda_H 313 GH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPESLS 363 (368)
T ss_dssp EE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCCEEE
T ss_pred CC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCCCCEEE
Confidence 43 5789999999 5 567777 59999999999999999998444445554
No 219
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.49 E-value=1.2e-05 Score=87.68 Aligned_cols=256 Identities=11% Similarity=-0.007 Sum_probs=149.9
Q ss_pred eeEEEEcCCCceEeeecceee-ecCccceeEEEeec---ceEeec----------CCCccEecccCCCCceeEEecCC--
Q 006825 315 WKKVKEVGTGRQLTIEEFEMC-VGHSPIVQELMRRQ---NVEEGN----------KDSFDLNNNGSSGGGMKSKKKGS-- 378 (630)
Q Consensus 315 ~~~l~dv~TG~~lt~eef~~l-~GHs~~V~~Lafs~---~laSgS----------~D~tvr~vWD~~tG~~~~~lk~g-- 378 (630)
...+.|..|++.+ .++ .|..+ .++++| .|..+. .+++|. ++|..+++.+.++..+
T Consensus 100 ~VsVID~~t~~vv-----~~I~vG~~P---gia~SpDgk~lyVan~~~~~~~~G~~~~~Vs-viD~~t~~vv~~I~v~g~ 170 (426)
T 3c75_H 100 QQFVIDGSTGRIL-----GMTDGGFLP---HPVAAEDGSFFAQASTVFERIARGKRTDYVE-VFDPVTFLPIADIELPDA 170 (426)
T ss_dssp EEEEEETTTTEEE-----EEEEECSSC---EEEECTTSSCEEEEEEEEEETTEEEEEEEEE-EECTTTCCEEEEEEETTC
T ss_pred eEEEEECCCCEEE-----EEEECCCCC---ceEECCCCCEEEEEeccccccccCCCCCEEE-EEECCCCcEEEEEECCCc
Confidence 5677888888888 333 34443 788998 333332 467888 9999999988876532
Q ss_pred ----ccCCEEEEEEcCCCCeEEeecCC-CCCcc--ccCCcceEEEeec---------CCCeEEEecCCcEEEEEeCCCCc
Q 006825 379 ----WFKSIRTVASSVTGHKERRSSDE-RDTSS--EKGGRRSSSATDD---------SQDVSFHGQERVRVRQYGKSCKD 442 (630)
Q Consensus 379 ----H~~~V~sVAfSpdG~~lasgS~D-~dt~s--~~gh~~~Vsa~~~---------s~d~l~Sgs~Dg~VriWd~~~~e 442 (630)
....-..++|+|||+++..+... ..... -......+..+.. ....+++.+.|+++.+.+...++
T Consensus 171 ~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~ 250 (426)
T 3c75_H 171 PRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGE 250 (426)
T ss_dssp CCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTC
T ss_pred cccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCc
Confidence 11223458999999988776543 21000 0000011111111 12224555667777777764433
Q ss_pred ccceeeeeEecccCcCE-EEEEEccCCCEEEEEeCCCcEEEEECcCCcee--eeeecc--cc--cC-cccceEEEEECCC
Q 006825 443 LTALYKCQEIQAHNGSI-WSIKFSLDGRYLASAGEDCVIHVWQVVESERK--GELLEK--QE--DG-HLNMLLLANGSPE 514 (630)
Q Consensus 443 l~~~~~v~tL~gHt~~V-~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~--~~l~~~--~~--~g-h~~~V~svafSpd 514 (630)
...... ..+.-...++ ..+.|.+++..++.....++|.+.|+...... ..+... .. .+ .......++++|+
T Consensus 251 v~~~~~-~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~d 329 (426)
T 3c75_H 251 TKVTNT-EVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQ 329 (426)
T ss_dssp CEEEEC-CCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGG
T ss_pred EEEEee-eeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCC
Confidence 210000 0111111221 23578999888777788899999998654321 111000 00 00 0111123678898
Q ss_pred CCEEEEeeC----------CCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-C-eE
Q 006825 515 PTSLSPKHL----------DNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-Q-HL 581 (630)
Q Consensus 515 g~~lasgs~----------Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~-~L 581 (630)
+..+..... .+.| .++|. +.+.+.++.... ....|+|+|| + +|
T Consensus 330 g~rlyVa~~~~~~gthk~~s~~V-----------------------sVID~~T~kvv~~I~vg~-~P~gia~spDg~~~l 385 (426)
T 3c75_H 330 SDRIYLLVDQRDEWKHKAASRFV-----------------------VVLNAETGERINKIELGH-EIDSINVSQDAEPLL 385 (426)
T ss_dssp GTEEEEEEEECCTTCTTSCEEEE-----------------------EEEETTTCCEEEEEEEEE-EECEEEECCSSSCEE
T ss_pred CCEEEEEecccccccccCCCCEE-----------------------EEEECCCCeEEEEEECCC-CcCeEEEccCCCEEE
Confidence 776665432 1233 67777 778887775322 4789999999 7 78
Q ss_pred EEEE-CCCcEEEEeCCCCcEEEEE
Q 006825 582 LSSS-MDKTVRLWHLSSKTCLKIF 604 (630)
Q Consensus 582 aSgS-~DgtVrIWDl~tg~~l~t~ 604 (630)
++.. .+++|.++|+.+++.++++
T Consensus 386 yv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 386 YALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEEcCCCCeEEEEECCCCCEEEEe
Confidence 8887 5999999999999999997
No 220
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.46 E-value=1.9e-05 Score=90.96 Aligned_cols=165 Identities=8% Similarity=-0.061 Sum_probs=98.9
Q ss_pred EEEEEeCCCCcccceeeeeEec--ccC-------cCEEEEEEccCCC---EEEEEeCCCcEEEEECcCCceeeeeeccc-
Q 006825 432 RVRQYGKSCKDLTALYKCQEIQ--AHN-------GSIWSIKFSLDGR---YLASAGEDCVIHVWQVVESERKGELLEKQ- 498 (630)
Q Consensus 432 ~VriWd~~~~el~~~~~v~tL~--gHt-------~~V~sVaFSpDG~---~LASgS~DgtIrVWDl~tg~~~~~l~~~~- 498 (630)
.|..||..+++. +..++ .|. ..+....+..+|+ .|+.++.+|.|+++|..+|+.+.......
T Consensus 276 ~v~AlD~~TG~~-----~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~ 350 (689)
T 1yiq_A 276 SIVAVNADTGEY-----VWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQ 350 (689)
T ss_dssp EEEEEETTTCCE-----EEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCC
T ss_pred eEEEEEccCCce-----eEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecccccccc
Confidence 488888887763 22222 232 2222223333676 79999999999999999998874321000
Q ss_pred ----------------------ccCccc-----------ceEEEEECCCCCEEEEeeCCCeeeeeccccc---------c
Q 006825 499 ----------------------EDGHLN-----------MLLLANGSPEPTSLSPKHLDNHLEKKRRGRS---------I 536 (630)
Q Consensus 499 ----------------------~~gh~~-----------~V~svafSpdg~~lasgs~Dg~I~i~~~~~~---------~ 536 (630)
+..... ....++++|+..+++....+.....+...+. .
T Consensus 351 ~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (689)
T 1yiq_A 351 SWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMY 430 (689)
T ss_dssp SSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSC
T ss_pred ccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeecccccccccccccc
Confidence 000000 0113678888777777765544433332211 0
Q ss_pred ccc----c------------cccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCC
Q 006825 537 NRK----S------------LSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK 598 (630)
Q Consensus 537 ~~~----s------------~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg 598 (630)
... . ...++.+ ..|++ +|+.+-++..+.. +....+... ++++.|+.|+.|+.||.++|
T Consensus 431 ~~g~~~~~~p~~~~~~~~~~~~~~g~l---~A~D~~tG~~~W~~~~~~~-~~~g~~~tagglvf~gt~dg~l~a~D~~tG 506 (689)
T 1yiq_A 431 QLGLRTGMMPEGAEGLLEMAKSWSGKL---IAWDPVKQQAAWEVPYVTI-FNGGTLSTAGNLVFEGSADGRVIAYAADTG 506 (689)
T ss_dssp CCSSEECCCCSSHHHHHHHHTTCEEEE---EEEETTTTEEEEEEEESSS-CCCCEEEETTTEEEEECTTSEEEEEETTTC
T ss_pred ccCccccccCcccccCCCCCCCcceeE---EEEECCCCCeEeEccCCCC-ccCccceECCCEEEEECCCCcEEEEECCCC
Confidence 000 0 0001223 67888 7888888765543 333345545 89999999999999999999
Q ss_pred cEEEEEe
Q 006825 599 TCLKIFS 605 (630)
Q Consensus 599 ~~l~t~~ 605 (630)
+.+..+.
T Consensus 507 ~~lw~~~ 513 (689)
T 1yiq_A 507 EKLWEQP 513 (689)
T ss_dssp CEEEEEE
T ss_pred ccceeee
Confidence 9999997
No 221
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.42 E-value=2.7e-05 Score=79.22 Aligned_cols=184 Identities=10% Similarity=-0.064 Sum_probs=108.8
Q ss_pred CceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceee
Q 006825 369 GGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYK 448 (630)
Q Consensus 369 G~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~ 448 (630)
+..+.++. .........+|+|+|++|. ++....+.|..|+.. ++
T Consensus 34 ~~~~~~l~-~~~~~~egp~~~~~g~~l~----------------------------~~d~~~~~i~~~~~~-g~------ 77 (305)
T 3dr2_A 34 DARLLTLY-DQATWSEGPAWWEAQRTLV----------------------------WSDLVGRRVLGWRED-GT------ 77 (305)
T ss_dssp TCCCEEEE-CCCSSEEEEEEEGGGTEEE----------------------------EEETTTTEEEEEETT-SC------
T ss_pred CCceEEEe-cCCcCccCCeEeCCCCEEE----------------------------EEECCCCEEEEEeCC-CC------
Confidence 34445555 4566678899999887443 556667789999873 32
Q ss_pred eeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccC-cccceEEEEECCCCCEEEEeeCCCee
Q 006825 449 CQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG-HLNMLLLANGSPEPTSLSPKHLDNHL 527 (630)
Q Consensus 449 v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~g-h~~~V~svafSpdg~~lasgs~Dg~I 527 (630)
...+..+...+..++|+++|+++++...++.|.+|+.. +.. ..+... ..+ ....+..+++.|+|.++++-..-++.
T Consensus 78 ~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~-~~~~~~-~~~~~~~~~~~i~~d~dG~l~~td~~~g~~ 154 (305)
T 3dr2_A 78 VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQA-HLLVGR-YAGKRLNSPNDLIVARDGAIWFTDPPFGLR 154 (305)
T ss_dssp EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECE-ETTEECSCCCCEEECTTSCEEEECCSGGGS
T ss_pred EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCE-EEEEec-cCCCccCCCCCEEECCCCCEEEeCcCCCcc
Confidence 23455567789999999999977776667889999985 442 222111 111 12345678999999988863211111
Q ss_pred eeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECC------CcEEEEeCCCCc
Q 006825 528 EKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMD------KTVRLWHLSSKT 599 (630)
Q Consensus 528 ~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~D------gtVrIWDl~tg~ 599 (630)
..+..... ........+ ..++. +++... +. +....+.++|+|+ ++|+.+... +.|++|++..+.
T Consensus 155 ~~~~~~~~---~~~~~~~~v---~~~d~~~g~~~~-~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~ 226 (305)
T 3dr2_A 155 KPSQGCPA---DPELAHHSV---YRLPPDGSPLQR-MA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA 226 (305)
T ss_dssp CGGGSCCC---CCSSSCEEE---EEECSSSCCCEE-EE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE
T ss_pred cccccccc---ccccCCCeE---EEEcCCCCcEEE-Ee-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC
Confidence 00000000 000000001 33444 344333 33 4456789999999 666665554 789999987654
No 222
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.37 E-value=2.6e-05 Score=89.53 Aligned_cols=167 Identities=7% Similarity=-0.004 Sum_probs=97.5
Q ss_pred EEEEEeCCCCcccceeeeeEecccC-------cCEEEEEEccCC---CEEEEEeCCCcEEEEECcCCceeeeeeccccc-
Q 006825 432 RVRQYGKSCKDLTALYKCQEIQAHN-------GSIWSIKFSLDG---RYLASAGEDCVIHVWQVVESERKGELLEKQED- 500 (630)
Q Consensus 432 ~VriWd~~~~el~~~~~v~tL~gHt-------~~V~sVaFSpDG---~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~- 500 (630)
.|..+|..+++..=. ..+..|. ....-+.+..+| ..|+.++.+|.|.++|..+|+.+..+......
T Consensus 284 sv~AlD~~TG~~~W~---~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~ 360 (677)
T 1kb0_A 284 SIVALDPDTGKYKWH---YQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNW 360 (677)
T ss_dssp EEEEECTTTCCEEEE---EESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSS
T ss_pred EEEEEECCCCCEEEE---EecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCc
Confidence 477777777653111 1122231 122233444588 68999999999999999999987654211000
Q ss_pred -----Ccccce------------------------EEEEECCCCCEEEEeeCCCeeeeecccc---c----------ccc
Q 006825 501 -----GHLNML------------------------LLANGSPEPTSLSPKHLDNHLEKKRRGR---S----------INR 538 (630)
Q Consensus 501 -----gh~~~V------------------------~svafSpdg~~lasgs~Dg~I~i~~~~~---~----------~~~ 538 (630)
.....+ ..++++|+..+++....+-....+.... . ...
T Consensus 361 ~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 440 (677)
T 1kb0_A 361 ASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGW 440 (677)
T ss_dssp EEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTC
T ss_pred ccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccc
Confidence 000001 1467888877777765443222221110 0 000
Q ss_pred c-------c---cccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825 539 K-------S---LSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS 605 (630)
Q Consensus 539 ~-------s---~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~ 605 (630)
. . ......+ ..|++ +++.+-++. +...+....+... ++++.++.|+.|++||+.+|+++..|.
T Consensus 441 ~~g~~~~~~~~~~~~~g~l---~A~D~~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~ 515 (677)
T 1kb0_A 441 NTAKFFNAEPPKSKPFGRL---LAWDPVAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP 515 (677)
T ss_dssp CCCEEECSSCCCSCCEEEE---EEEETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ccccccccccCCCCCccEE---EEEeCCCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeee
Confidence 0 0 0001222 56777 788777765 3334555556655 888889999999999999999999997
No 223
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.37 E-value=0.00014 Score=77.36 Aligned_cols=232 Identities=7% Similarity=-0.077 Sum_probs=126.1
Q ss_pred ccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeC
Q 006825 359 FDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGK 438 (630)
Q Consensus 359 tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~ 438 (630)
++. ++|..+++.+.++..|. .. .++|+|||+++....... .....|..+..|.+||.
T Consensus 48 ~v~-v~D~~t~~~~~~i~~g~-~p--~i~~spDg~~lyv~n~~~-------------------~~~~rg~~~~~v~viD~ 104 (373)
T 2mad_H 48 QQW-VLDAGSGSILGHVNGGF-LP--NPVAAHSGSEFALASTSF-------------------SRIAKGKRTDYVEVFDP 104 (373)
T ss_pred EEE-EEECCCCeEEEEecCCC-CC--CeEECCCCCEEEEEeccc-------------------cccccCCCCCeEEEEEC
Confidence 677 99999999988887553 33 799999999876432110 00111234567888988
Q ss_pred CCCcccceeeeeEecc----c---CcCEEEEEEccCCCEEEEEeC--CCcEEEEECcCCceeee-eecccccCc-----c
Q 006825 439 SCKDLTALYKCQEIQA----H---NGSIWSIKFSLDGRYLASAGE--DCVIHVWQVVESERKGE-LLEKQEDGH-----L 503 (630)
Q Consensus 439 ~~~el~~~~~v~tL~g----H---t~~V~sVaFSpDG~~LASgS~--DgtIrVWDl~tg~~~~~-l~~~~~~gh-----~ 503 (630)
.+.+. +.++.- + ...-..++|+|||++|+.+.. +.+|.++| .+++.+.. +.. .+. .
T Consensus 105 ~t~~~-----~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~---~~~~~~~~~ 175 (373)
T 2mad_H 105 VTFLP-----IADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS---PTCYHIHPG 175 (373)
T ss_pred CCCcE-----EEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC---CceEEEEeC
Confidence 76543 222211 0 123458999999999998874 47899999 99887766 421 110 0
Q ss_pred cceEEEEECCCCCEEEEeeCCCeeeeecc------cccc--cccccccCc-cc-c-----ccEEEeCCCC---ceEEecc
Q 006825 504 NMLLLANGSPEPTSLSPKHLDNHLEKKRR------GRSI--NRKSLSLDH-MV-V-----PETVFALSDK---PICSFQG 565 (630)
Q Consensus 504 ~~V~svafSpdg~~lasgs~Dg~I~i~~~------~~~~--~~~s~s~d~-~i-~-----~~~Vwdlsgk---~l~tL~G 565 (630)
..-..+.+++++++++... .+.+..... .... ....+..+. .. . .-.+.++.+. .+..+.-
T Consensus 176 ~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~ 254 (373)
T 2mad_H 176 APSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDA 254 (373)
T ss_pred CCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeee
Confidence 0001234445555554444 332210000 0000 000000000 00 0 0022333211 1111110
Q ss_pred ----------CCCCEEEEEEcCC-CeEEEEEC----------CCcEEEEeCCCCcEEEEEecCCceEEEE-cCCCc-EEE
Q 006825 566 ----------HLDDVLDLSWSKS-QHLLSSSM----------DKTVRLWHLSSKTCLKIFSHSDYDISLV-DRLML-RFA 622 (630)
Q Consensus 566 ----------Hs~~V~sLafSPd-~~LaSgS~----------DgtVrIWDl~tg~~l~t~~H~~~V~sVa-s~~~~-~lA 622 (630)
.......++|+|+ ++|..+.. .+.|.+.|+.+++.+.++.-....++++ ++++. .+.
T Consensus 255 ~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~ 334 (373)
T 2mad_H 255 LSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLY 334 (373)
T ss_pred cCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEE
Confidence 1122344788998 65554432 3589999999999999998555678888 77777 444
Q ss_pred E
Q 006825 623 Y 623 (630)
Q Consensus 623 s 623 (630)
+
T Consensus 335 v 335 (373)
T 2mad_H 335 A 335 (373)
T ss_pred E
Confidence 3
No 224
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.20 E-value=3e-05 Score=78.36 Aligned_cols=253 Identities=11% Similarity=-0.057 Sum_probs=133.9
Q ss_pred ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecC----CCCCcc---ccCCcceEEEeecCCC
Q 006825 350 NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSD----ERDTSS---EKGGRRSSSATDDSQD 422 (630)
Q Consensus 350 ~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~----D~dt~s---~~gh~~~Vsa~~~s~d 422 (630)
.+..++.++.+. .|| .+|+.+.+.. .+...+.++++.++|...+.... +.+... ...+............
T Consensus 32 ~l~v~t~~~~l~-~~d-~~g~~~~~~~-~~~~~~~~~~~~~~g~l~v~t~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 108 (330)
T 3hxj_A 32 TIYLGSSNKNLY-AIN-TDGSVKWFFK-SGEIIECRPSIGKDGTIYFGSDKVYAINPDGTEKWRFDTKKAIVSDFTIFED 108 (330)
T ss_dssp CEECSSTTTTTE-EEC-TTSCEEESSC-GGGEEEECCEETTTTEECCSSCEEEEECCCGGGGGGSCC-----CCEEEETT
T ss_pred eEEEEcCCCEEE-EEC-CCCcEEEEEe-cCCCcccceEEecCCcEEEecCcEEEECCCCcEEEEEECCCCcccCceEECC
Confidence 566778888888 899 8888776655 44455677777777765442211 110000 1111111111112244
Q ss_pred eEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCc
Q 006825 423 VSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGH 502 (630)
Q Consensus 423 ~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh 502 (630)
.++.+..++.|..++.. ++. ...+..+...+.++.+.++|+ |..++.++.|..||.. ++....+. ..
T Consensus 109 ~l~v~t~~~~l~~~d~~-g~~-----~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~-----~~ 175 (330)
T 3hxj_A 109 ILYVTSMDGHLYAINTD-GTE-----KWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFK-----TN 175 (330)
T ss_dssp EEEEECTTSEEEEECTT-SCE-----EEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEE-----CS
T ss_pred EEEEEecCCEEEEEcCC-CCE-----EEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEe-----cC
Confidence 48888889999999987 432 333444555677788888888 4457788999999998 66554431 22
Q ss_pred ccceEEEEECCCCCEEEEeeCCCeeeeeccccccc---------ccc--cccCccc-c---cc--EEEeCCCCceEEecc
Q 006825 503 LNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSIN---------RKS--LSLDHMV-V---PE--TVFALSDKPICSFQG 565 (630)
Q Consensus 503 ~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~---------~~s--~s~d~~i-~---~~--~Vwdlsgk~l~tL~G 565 (630)
...+..+.+.+++.+++.. +.+..++...... ... ...++.+ . .. ..++.+++.+..+..
T Consensus 176 ~~~~~~~~~d~~g~l~v~t---~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~~g~~~~~~~~ 252 (330)
T 3hxj_A 176 DAITSAASIGKDGTIYFGS---DKVYAINPDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINPDGTEKWRFKT 252 (330)
T ss_dssp SCCCSCCEECTTCCEEEES---SSEEEECTTSCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECTTSCEEEEEEC
T ss_pred CCceeeeEEcCCCEEEEEe---CEEEEECCCCcEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECCCCCEeEEeeC
Confidence 2345556666777766554 4443333110000 000 0001000 0 00 111123334444443
Q ss_pred CCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE-cCCCcEEE
Q 006825 566 HLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV-DRLMLRFA 622 (630)
Q Consensus 566 Hs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa-s~~~~~lA 622 (630)
....+..+.+.+++.|..++.++.|..+| .+++.+..+. ....+.++. +..+..++
T Consensus 253 ~~~~~~~~~~~~~g~l~v~t~~ggl~~~d-~~g~~~~~~~~~~~~~~~~~~d~~g~l~~ 310 (330)
T 3hxj_A 253 GKRIESSPVIGNTDTIYFGSYDGHLYAIN-PDGTEKWNFETGSWIIATPVIDENGTIYF 310 (330)
T ss_dssp SSCCCSCCEECTTSCEEEECTTCEEEEEC-TTSCEEEEEECSSCCCSCCEECTTCCEEE
T ss_pred CCCccccceEcCCCeEEEecCCCCEEEEC-CCCcEEEEEEcCCccccceEEcCCCEEEE
Confidence 33334445554445566666666677776 6666666666 445555555 45555444
No 225
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.17 E-value=9.3e-05 Score=74.70 Aligned_cols=195 Identities=10% Similarity=0.007 Sum_probs=104.0
Q ss_pred ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecC
Q 006825 350 NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQE 429 (630)
Q Consensus 350 ~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~ 429 (630)
.+..++.++.+. .+|.. |+.+.... .+...+.+++..++|. ++.+..
T Consensus 109 ~l~v~t~~~~l~-~~d~~-g~~~~~~~-~~~~~~~~~~~~~~g~------------------------------l~vgt~ 155 (330)
T 3hxj_A 109 ILYVTSMDGHLY-AINTD-GTEKWRFK-TKKAIYATPIVSEDGT------------------------------IYVGSN 155 (330)
T ss_dssp EEEEECTTSEEE-EECTT-SCEEEEEE-CSSCCCSCCEECTTSC------------------------------EEEECT
T ss_pred EEEEEecCCEEE-EEcCC-CCEEEEEc-CCCceeeeeEEcCCCE------------------------------EEEEcC
Confidence 566677777777 78877 76655554 2222333333333322 556666
Q ss_pred CcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEE
Q 006825 430 RVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLA 509 (630)
Q Consensus 430 Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~sv 509 (630)
++.|..|+.. ++. ...+..+...+.++.+.++|.+++.. +.|..|| .+++..... ......+.++
T Consensus 156 ~~~l~~~d~~-g~~-----~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~-----~~~~~~~~~~ 220 (330)
T 3hxj_A 156 DNYLYAINPD-GTE-----KWRFKTNDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWNF-----YAGYWTVTRP 220 (330)
T ss_dssp TSEEEEECTT-SCE-----EEEEECSSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEEE-----CCSSCCCSCC
T ss_pred CCEEEEECCC-CCE-----eEEEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEEE-----ccCCcceece
Confidence 7788888876 432 23334445567778888888865544 7788899 666655443 2222446667
Q ss_pred EECCCCCEEEEeeCCCeeeeecccccccccccccCc-----ccc--ccEEEe-----------CCCCceEEeccCCCCEE
Q 006825 510 NGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDH-----MVV--PETVFA-----------LSDKPICSFQGHLDDVL 571 (630)
Q Consensus 510 afSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~-----~i~--~~~Vwd-----------lsgk~l~tL~GHs~~V~ 571 (630)
...+++.+++.. .++.+...+..... ........ ... ...+|- .+++.+..+.-....+.
T Consensus 221 ~~~~~g~l~v~t-~~~gl~~~~~~g~~-~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~~g~~~~~~~~~~~~~~ 298 (330)
T 3hxj_A 221 AISEDGTIYVTS-LDGHLYAINPDGTE-KWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAINPDGTEKWNFETGSWIIA 298 (330)
T ss_dssp EECTTSCEEEEE-TTTEEEEECTTSCE-EEEEECSSCCCSCCEECTTSCEEEECTTCEEEEECTTSCEEEEEECSSCCCS
T ss_pred EECCCCeEEEEc-CCCeEEEECCCCCE-eEEeeCCCCccccceEcCCCeEEEecCCCCEEEECCCCcEEEEEEcCCcccc
Confidence 777777665544 44444333321111 00000000 000 113333 23444444444444455
Q ss_pred EEEEcCCCeEEEEECCCcEEEEe
Q 006825 572 DLSWSKSQHLLSSSMDKTVRLWH 594 (630)
Q Consensus 572 sLafSPd~~LaSgS~DgtVrIWD 594 (630)
++...+++.|..++.+|.+++..
T Consensus 299 ~~~~d~~g~l~~gt~~G~~~~~~ 321 (330)
T 3hxj_A 299 TPVIDENGTIYFGTRNGKFYALF 321 (330)
T ss_dssp CCEECTTCCEEEECTTSCEEEEE
T ss_pred ceEEcCCCEEEEEcCCCeEEEEe
Confidence 56655556666677777777643
No 226
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.15 E-value=3.5e-07 Score=97.00 Aligned_cols=145 Identities=10% Similarity=0.047 Sum_probs=77.1
Q ss_pred CCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeeccccc
Q 006825 421 QDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQED 500 (630)
Q Consensus 421 ~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~ 500 (630)
...++.++.|+.|+.||..+++. +..+.. +.+.+..+..+++++++++.|+.|+.||..+|+.+..+.
T Consensus 9 ~~~v~~gs~dg~v~a~d~~tG~~-----~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~----- 76 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKRTGSI-----KWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLP----- 76 (369)
T ss_dssp TTEEEEEETTSEEEEEETTTCCE-----EEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECS-----
T ss_pred CCEEEEEcCCCEEEEEECCCCCE-----EEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeee-----
Confidence 34478889999999999988863 344444 456666677788888888999999999999888765431
Q ss_pred Ccc-cceE-EEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccCCCCEEEEEEcC
Q 006825 501 GHL-NMLL-LANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSK 577 (630)
Q Consensus 501 gh~-~~V~-svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafSP 577 (630)
.+. ..+. ...+. .+..+++++.++.+ ..|+. +|+.+.++..+. .+.++|
T Consensus 77 ~~~~~~~~~sp~~~-~~~~v~~g~~dg~v-----------------------~a~D~~tG~~~w~~~~~~----~~~~~p 128 (369)
T 2hz6_A 77 FTIPELVQASPCRS-SDGILYMGKKQDIW-----------------------YVIDLLTGEKQQTLSSAF----ADSLSP 128 (369)
T ss_dssp CCHHHHHTTCSCC------CCCCEEEEEE-----------------------EEECCC----------------------
T ss_pred ccCccccccCceEe-cCCEEEEEeCCCEE-----------------------EEEECCCCcEEEEecCCC----cccccc
Confidence 111 0110 00111 23455666677777 66776 677777666554 234566
Q ss_pred C-CeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825 578 S-QHLLSSSMDKTVRLWHLSSKTCLKIFS 605 (630)
Q Consensus 578 d-~~LaSgS~DgtVrIWDl~tg~~l~t~~ 605 (630)
+ +.|+.++.|+.|+.||..+|+.+..+.
T Consensus 129 ~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 157 (369)
T 2hz6_A 129 STSLLYLGRTEYTITMYDTKTRELRWNAT 157 (369)
T ss_dssp ----EEEEEEEEEEECCCSSSSSCCCEEE
T ss_pred cCCEEEEEecCCEEEEEECCCCCEEEeEe
Confidence 7 889999999999999999998876654
No 227
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.14 E-value=0.00012 Score=78.78 Aligned_cols=231 Identities=10% Similarity=-0.012 Sum_probs=132.5
Q ss_pred CCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEE
Q 006825 357 DSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQY 436 (630)
Q Consensus 357 D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriW 436 (630)
++++. +-|..+++.+.++..|.. . . ++++|||+++...+.- .. ....|..+..|.+|
T Consensus 58 ~~~V~-ViD~~t~~v~~~I~vG~~-P-~-va~spDG~~lyVan~~-----------------~~--r~~~G~~~~~Vsvi 114 (386)
T 3sjl_D 58 VTQQF-VIDGEAGRVIGMIDGGFL-P-N-PVVADDGSFIAHASTV-----------------FS--RIARGERTDYVEVF 114 (386)
T ss_dssp SEEEE-EEETTTTEEEEEEEECSS-C-E-EEECTTSSCEEEEEEE-----------------EE--ETTEEEEEEEEEEE
T ss_pred CCEEE-EEECCCCeEEEEEECCCC-C-c-EEECCCCCEEEEEccc-----------------cc--ccccCCCCCEEEEE
Confidence 56777 889999999998885544 3 3 9999999977432100 00 00112345679999
Q ss_pred eCCCCcccceeeeeEeccc-------CcCEEEEEEccCCCEEEEEeC--CCcEEEEECcCCceeeeeecccccCcc----
Q 006825 437 GKSCKDLTALYKCQEIQAH-------NGSIWSIKFSLDGRYLASAGE--DCVIHVWQVVESERKGELLEKQEDGHL---- 503 (630)
Q Consensus 437 d~~~~el~~~~~v~tL~gH-------t~~V~sVaFSpDG~~LASgS~--DgtIrVWDl~tg~~~~~l~~~~~~gh~---- 503 (630)
|..+.+. +.++.-. ...-..++|+|||++|+.+.. +++|.|+|+.+++.+.++.. .+..
T Consensus 115 D~~t~~v-----~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v---~g~~~~~P 186 (386)
T 3sjl_D 115 DPVTLLP-----TADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV---PDCYHIFP 186 (386)
T ss_dssp CTTTCCE-----EEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC---CSEEEEEE
T ss_pred ECCCCeE-----EEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEEC---CCcceeec
Confidence 9987753 3333211 113457999999999888864 68999999999998887632 1110
Q ss_pred -cceEEEEECCCCCEEEEeeCC-Ceeeeeccccccc---c-----ccc-ccCcccc----cc--EEEeCCCCceEEecc-
Q 006825 504 -NMLLLANGSPEPTSLSPKHLD-NHLEKKRRGRSIN---R-----KSL-SLDHMVV----PE--TVFALSDKPICSFQG- 565 (630)
Q Consensus 504 -~~V~svafSpdg~~lasgs~D-g~I~i~~~~~~~~---~-----~s~-s~d~~i~----~~--~Vwdlsgk~l~tL~G- 565 (630)
+.-..++.++||+++...... +.+.... ..... . ..+ ..++... .. .+++..+..+..+..
T Consensus 187 ~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~-~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~ 265 (386)
T 3sjl_D 187 TAPDTFFMHCRDGSLAKVAFGTEGTPEITH-TEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAV 265 (386)
T ss_dssp EETTEEEEEETTSCEEEEECCSSSCCEEEE-CCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCE
T ss_pred CCCceeEEECCCCCEEEEECCCCCeEEEee-cceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecce
Confidence 011124677888887776654 5542111 01000 0 000 0111110 00 223332221111100
Q ss_pred ------------CCCCEEEEEEcCC-CeEEEEEC----------CCcEEEEeCCCCcEEEEEecCCceEEEE-cCCCc
Q 006825 566 ------------HLDDVLDLSWSKS-QHLLSSSM----------DKTVRLWHLSSKTCLKIFSHSDYDISLV-DRLML 619 (630)
Q Consensus 566 ------------Hs~~V~sLafSPd-~~LaSgS~----------DgtVrIWDl~tg~~l~t~~H~~~V~sVa-s~~~~ 619 (630)
....+..++++|+ +.|...-. ..+|-+.|+.+++.++.+.-...++.|+ ++++.
T Consensus 266 ~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~ 343 (386)
T 3sjl_D 266 EALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEK 343 (386)
T ss_dssp ESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSS
T ss_pred eccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCC
Confidence 0112334777888 55544322 2579999999999999998444777888 66664
No 228
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.11 E-value=0.00015 Score=83.14 Aligned_cols=146 Identities=10% Similarity=-0.015 Sum_probs=85.4
Q ss_pred EEEEEccCCCEEEEEeCCC-------------------cEEEEECcCCceeeeeecccccCcc-------cceEEEEECC
Q 006825 460 WSIKFSLDGRYLASAGEDC-------------------VIHVWQVVESERKGELLEKQEDGHL-------NMLLLANGSP 513 (630)
Q Consensus 460 ~sVaFSpDG~~LASgS~Dg-------------------tIrVWDl~tg~~~~~l~~~~~~gh~-------~~V~svafSp 513 (630)
..++|+|++.+|+.+..++ +|..+|..+|+.+..+.. ..|. .....+....
T Consensus 246 ~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~---~~~d~wd~~~~~~p~l~~~~~ 322 (677)
T 1kb0_A 246 DSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQE---TPGDNWDYTSTQPMILADIKI 322 (677)
T ss_dssp SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEES---STTCCSCCCCCSCCEEEEEEE
T ss_pred cceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEec---CCCcccccccCCCcEEEeccc
Confidence 3678999999888887664 599999999998766421 1121 1222233334
Q ss_pred CC---CEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceE------------Ee---ccCCCCEEEEEE
Q 006825 514 EP---TSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPIC------------SF---QGHLDDVLDLSW 575 (630)
Q Consensus 514 dg---~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~------------tL---~GHs~~V~sLaf 575 (630)
+| .+++.+..++.+.+.+......+........ .+..-++.+++++. .+ .|.... ..++|
T Consensus 323 dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~-~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w-~~~a~ 400 (677)
T 1kb0_A 323 AGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPV-NWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNW-HPMSF 400 (677)
T ss_dssp TTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCC-SSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCS-SCCEE
T ss_pred CCcEeeEEEEECCCCEEEEEECCCCCEecccccccc-CcccccCCCCceeeccccCcCCCccEECcCcccccCC-CCceE
Confidence 66 6788888899887776655333222211110 00011112222221 11 111111 36788
Q ss_pred cCC-CeEEEEEC-------------------------------------------CCcEEEEeCCCCcEEEEEecCCce
Q 006825 576 SKS-QHLLSSSM-------------------------------------------DKTVRLWHLSSKTCLKIFSHSDYD 610 (630)
Q Consensus 576 SPd-~~LaSgS~-------------------------------------------DgtVrIWDl~tg~~l~t~~H~~~V 610 (630)
+|+ ++|+.... .++|..||+.+|+.+..+.+...+
T Consensus 401 dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~ 479 (677)
T 1kb0_A 401 NPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPW 479 (677)
T ss_dssp ETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSC
T ss_pred cCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCC
Confidence 998 77766543 278999999999999988754433
No 229
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.10 E-value=0.00026 Score=77.05 Aligned_cols=238 Identities=8% Similarity=-0.026 Sum_probs=134.7
Q ss_pred CccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEe
Q 006825 358 SFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYG 437 (630)
Q Consensus 358 ~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd 437 (630)
++|. +.|..+++.+.++..|.. . .++++|||+++..+... . ...+.|..++.|.++|
T Consensus 99 ~~Vs-VID~~t~~vv~~I~vG~~-P--gia~SpDgk~lyVan~~-----------------~--~~~~~G~~~~~VsviD 155 (426)
T 3c75_H 99 TQQF-VIDGSTGRILGMTDGGFL-P--HPVAAEDGSFFAQASTV-----------------F--ERIARGKRTDYVEVFD 155 (426)
T ss_dssp EEEE-EEETTTTEEEEEEEECSS-C--EEEECTTSSCEEEEEEE-----------------E--EETTEEEEEEEEEEEC
T ss_pred CeEE-EEECCCCEEEEEEECCCC-C--ceEECCCCCEEEEEecc-----------------c--cccccCCCCCEEEEEE
Confidence 5777 999999999998886644 4 79999999977532100 0 0011233466899999
Q ss_pred CCCCcccceeeeeEec-c------cCcCEEEEEEccCCCEEEEEeC--CCcEEEEECcCCceeeeeecccccCcc---cc
Q 006825 438 KSCKDLTALYKCQEIQ-A------HNGSIWSIKFSLDGRYLASAGE--DCVIHVWQVVESERKGELLEKQEDGHL---NM 505 (630)
Q Consensus 438 ~~~~el~~~~~v~tL~-g------Ht~~V~sVaFSpDG~~LASgS~--DgtIrVWDl~tg~~~~~l~~~~~~gh~---~~ 505 (630)
..+.+. +.++. + ....-..++|+|||++|+.+.. +++|.+.|+.+.+.+.++..... .+. +.
T Consensus 156 ~~t~~v-----v~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~-~~~~p~g~ 229 (426)
T 3c75_H 156 PVTFLP-----IADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC-YHIFPASP 229 (426)
T ss_dssp TTTCCE-----EEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-EEEEEEET
T ss_pred CCCCcE-----EEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc-eeeccCCC
Confidence 987753 23332 1 0122457899999999999874 57899999999988877642110 000 11
Q ss_pred eEEEEECCCCCEEEEeeCCCeeee-----eccccccc--ccccccCcccc-----c--cEEEeCCCCceEEecc------
Q 006825 506 LLLANGSPEPTSLSPKHLDNHLEK-----KRRGRSIN--RKSLSLDHMVV-----P--ETVFALSDKPICSFQG------ 565 (630)
Q Consensus 506 V~svafSpdg~~lasgs~Dg~I~i-----~~~~~~~~--~~s~s~d~~i~-----~--~~Vwdlsgk~l~tL~G------ 565 (630)
-..+.++++|++++....++++.. +....... ...+..+.... . -.+.+..+..+..+..
T Consensus 230 ~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~ 309 (426)
T 3c75_H 230 TVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTE 309 (426)
T ss_dssp TEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCT
T ss_pred cEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccc
Confidence 123567788887766655555431 11111000 00011111000 0 0222322211111100
Q ss_pred -------CCCCEEEEEEcCC-CeEEEEE----------CCCcEEEEeCCCCcEEEEEecCCceEEEE-cCCCc-EEEEe
Q 006825 566 -------HLDDVLDLSWSKS-QHLLSSS----------MDKTVRLWHLSSKTCLKIFSHSDYDISLV-DRLML-RFAYG 624 (630)
Q Consensus 566 -------Hs~~V~sLafSPd-~~LaSgS----------~DgtVrIWDl~tg~~l~t~~H~~~V~sVa-s~~~~-~lAsg 624 (630)
.......++|+|+ ++|...- .+++|-+.|+.+.+.+.++.-....+.|+ ++++. .+.+.
T Consensus 310 ~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~ 388 (426)
T 3c75_H 310 AERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYAL 388 (426)
T ss_dssp TTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEE
T ss_pred cccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEE
Confidence 0011123689998 6554432 14579999999999999998333567787 77766 44443
No 230
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.09 E-value=0.0083 Score=59.29 Aligned_cols=202 Identities=8% Similarity=-0.086 Sum_probs=114.6
Q ss_pred ceeEEEeec----ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEE
Q 006825 341 IVQELMRRQ----NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSA 416 (630)
Q Consensus 341 ~V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa 416 (630)
.+..+++.+ ..++-...+.|. .++..++....... ........+++.+++.++.
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~-~~~~~g~~~~~~~~-~~~~~p~~ia~d~~~~~ly-------------------- 94 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIG-RASLHGGEPTTIIR-QDLGSPEGIALDHLGRTIF-------------------- 94 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEE-EEESSSCCCEEEEC-TTCCCEEEEEEETTTTEEE--------------------
T ss_pred cEEEEEEecCCCEEEEEECCCCEEE-EEecCCCCcEEEEE-CCCCCccEEEEEecCCeEE--------------------
Confidence 356677765 233444556777 77776554433332 3335667788887654432
Q ss_pred eecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeC---CCcEEEEECcCCceeee
Q 006825 417 TDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE---DCVIHVWQVVESERKGE 493 (630)
Q Consensus 417 ~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~---DgtIrVWDl~tg~~~~~ 493 (630)
++-....+|.+++....... ..+.........|+++|++..|..+.. .+.|.++++.. .....
T Consensus 95 --------v~d~~~~~I~~~~~~g~~~~-----~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~ 160 (267)
T 1npe_A 95 --------WTDSQLDRIEVAKMDGTQRR-----VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRI 160 (267)
T ss_dssp --------EEETTTTEEEEEETTSCSCE-----EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEE
T ss_pred --------EEECCCCEEEEEEcCCCCEE-----EEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEE
Confidence 33334557777877543211 111212245689999996555544443 36788888753 33333
Q ss_pred eecccccCcccceEEEEECCCCCEE-EEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEE
Q 006825 494 LLEKQEDGHLNMLLLANGSPEPTSL-SPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLD 572 (630)
Q Consensus 494 l~~~~~~gh~~~V~svafSpdg~~l-asgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~s 572 (630)
+. .........+++++++..| ++....+.| .++++.+..+..+.........
T Consensus 161 ~~----~~~~~~P~gia~d~~~~~lyv~d~~~~~I-----------------------~~~~~~g~~~~~~~~~~~~P~g 213 (267)
T 1npe_A 161 LA----QDNLGLPNGLTFDAFSSQLCWVDAGTHRA-----------------------ECLNPAQPGRRKVLEGLQYPFA 213 (267)
T ss_dssp EE----CTTCSCEEEEEEETTTTEEEEEETTTTEE-----------------------EEEETTEEEEEEEEECCCSEEE
T ss_pred EE----ECCCCCCcEEEEcCCCCEEEEEECCCCEE-----------------------EEEecCCCceEEEecCCCCceE
Confidence 21 1223456789999986554 444445566 4444433322222111223356
Q ss_pred EEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825 573 LSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS 605 (630)
Q Consensus 573 LafSPd~~LaSgS~DgtVrIWDl~tg~~l~t~~ 605 (630)
|++..+.++++....+.|.++|..+++.+.++.
T Consensus 214 i~~d~~~lyva~~~~~~v~~~d~~~g~~~~~i~ 246 (267)
T 1npe_A 214 VTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFH 246 (267)
T ss_dssp EEEETTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred EEEeCCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence 666532455555567899999999999999886
No 231
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.09 E-value=0.00014 Score=75.60 Aligned_cols=203 Identities=8% Similarity=-0.079 Sum_probs=113.2
Q ss_pred eEEEEcCCCceEeeecce-eeecCccceeEEEeec----ceEeec---CCCccEecccCCCCceeEEecCCccCCEE-EE
Q 006825 316 KKVKEVGTGRQLTIEEFE-MCVGHSPIVQELMRRQ----NVEEGN---KDSFDLNNNGSSGGGMKSKKKGSWFKSIR-TV 386 (630)
Q Consensus 316 ~~l~dv~TG~~lt~eef~-~l~GHs~~V~~Lafs~----~laSgS---~D~tvr~vWD~~tG~~~~~lk~gH~~~V~-sV 386 (630)
...+|..||+.+..-.+. ....+...+..|++.+ ..++.+ .+..+. +||..+|+..+.+. +|..... .+
T Consensus 95 i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~-v~d~~~g~~~r~~~-~~~~~~~~~~ 172 (343)
T 2qe8_A 95 LVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALI-RVDLQTGLAARVLQ-GYPGIAPEDI 172 (343)
T ss_dssp EEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEE-EEETTTCCEEEECT-TCTTTSCCSC
T ss_pred EEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEE-EEECCCCCEEEEec-CCCccccccc
Confidence 345666777654221221 1122344567888885 235554 678898 99999998777665 5432110 13
Q ss_pred EEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCe--EEEecCCc-EEEEEeCC---CCcccceeee--eEecccCcC
Q 006825 387 ASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDV--SFHGQERV-RVRQYGKS---CKDLTALYKC--QEIQAHNGS 458 (630)
Q Consensus 387 AfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~--l~Sgs~Dg-~VriWd~~---~~el~~~~~v--~tL~gHt~~ 458 (630)
.|.++|+.+.+.+.+...... ...+..+++++++ ++.+...+ +|+.++.. ...+...... -...++.+.
T Consensus 173 ~~~~~g~~~~~~~~~g~~~~~---~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~ 249 (343)
T 2qe8_A 173 DLVIDGVPVQIGQPDGTVIRP---HLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPI 249 (343)
T ss_dssp CCEETTEECBEECTTSCEECC---CCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCS
T ss_pred ceeECCEEEEeccCCCceece---ecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCC
Confidence 344555544433322211000 1123455666665 44444333 55555431 1111000000 012345566
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCee
Q 006825 459 IWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHL 527 (630)
Q Consensus 459 V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I 527 (630)
...|+++++|+++++...++.|.+||..+++. ..+. ...+......++|.+++.++++......+
T Consensus 250 pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~-~~~~---~~~~~~~p~~va~~~~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 250 CDGISIDKDHNIYVGDLAHSAIGVITSADRAY-KLLV---TDEKLSWTDSFNFGSDGYLYFDCNQLHHS 314 (343)
T ss_dssp CSCEEECTTCCEEEEEGGGTEEEEEETTTTEE-EEEE---ECGGGSCEEEEEECTTSCEEEEECCGGGS
T ss_pred CceEEECCCCCEEEEccCCCeEEEEECCCCCE-EEEE---ECCceecCCeeEECCCCcEEEEeCccccc
Confidence 77899999999999999999999999855653 2221 11234568899999999988887654433
No 232
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.08 E-value=0.00024 Score=81.72 Aligned_cols=154 Identities=12% Similarity=-0.025 Sum_probs=88.7
Q ss_pred ceEeecCCCccEecccCCCCceeEEecCC-ccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEec
Q 006825 350 NVEEGNKDSFDLNNNGSSGGGMKSKKKGS-WFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQ 428 (630)
Q Consensus 350 ~laSgS~D~tvr~vWD~~tG~~~~~lk~g-H~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs 428 (630)
.+..++.|+.+. .+|.+||+.+-++... +......+..+| +. ....++.+.
T Consensus 123 ~v~v~~~dg~l~-AlDa~TG~~~W~~~~~~~~~~~~~~~~sP-----------------------~v----~~g~v~vg~ 174 (689)
T 1yiq_A 123 KVYVGVLDGRLE-AIDAKTGQRAWSVDTRADHKRSYTITGAP-----------------------RV----VNGKVVIGN 174 (689)
T ss_dssp EEEEECTTSEEE-EEETTTCCEEEEEECCSCTTSCCBCCSCC-----------------------EE----ETTEEEECC
T ss_pred EEEEEccCCEEE-EEECCCCCEeeeecCcCCCCCCccccCCc-----------------------EE----ECCEEEEEe
Confidence 677888999999 9999999998877632 211111111111 00 011122221
Q ss_pred ------CCcEEEEEeCCCCcccceeeeeEec-------------------------------ccCcCEEEEEEccCCCEE
Q 006825 429 ------ERVRVRQYGKSCKDLTALYKCQEIQ-------------------------------AHNGSIWSIKFSLDGRYL 471 (630)
Q Consensus 429 ------~Dg~VriWd~~~~el~~~~~v~tL~-------------------------------gHt~~V~sVaFSpDG~~L 471 (630)
.++.|+.||..++++. ..+. ++......++++|++.+|
T Consensus 175 ~~~~~~~~g~v~a~D~~tG~~~-----W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~v 249 (689)
T 1yiq_A 175 GGAEFGVRGYVTAYDAETGKEA-----WRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLL 249 (689)
T ss_dssp BCTTTCCBCEEEEEETTTCCEE-----EEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEE
T ss_pred CCCccCCCCEEEEEECCCCcEE-----EEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEE
Confidence 3677888887776531 1111 111112368899988999
Q ss_pred EEEeCCCc-------------------EEEEECcCCceeeeeeccccc--C--cccceEEEEECCCCC---EEEEeeCCC
Q 006825 472 ASAGEDCV-------------------IHVWQVVESERKGELLEKQED--G--HLNMLLLANGSPEPT---SLSPKHLDN 525 (630)
Q Consensus 472 ASgS~Dgt-------------------IrVWDl~tg~~~~~l~~~~~~--g--h~~~V~svafSpdg~---~lasgs~Dg 525 (630)
+.+..++. |..||..+|+.+..+...... . ....+....+..+|+ +++.+..++
T Consensus 250 y~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G 329 (689)
T 1yiq_A 250 YIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNG 329 (689)
T ss_dssp EEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTS
T ss_pred EEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCC
Confidence 99988764 999999999987664211000 0 111222222223554 677888889
Q ss_pred eeeeecccccc
Q 006825 526 HLEKKRRGRSI 536 (630)
Q Consensus 526 ~I~i~~~~~~~ 536 (630)
.+..++.....
T Consensus 330 ~l~~lD~~tG~ 340 (689)
T 1yiq_A 330 FFYVIDRATGE 340 (689)
T ss_dssp EEEEEETTTCC
T ss_pred eEEEEECCCCC
Confidence 88777765533
No 233
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.05 E-value=0.001 Score=69.04 Aligned_cols=214 Identities=7% Similarity=-0.035 Sum_probs=118.0
Q ss_pred ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCC-------CCcc----ccCCcce-----
Q 006825 350 NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDER-------DTSS----EKGGRRS----- 413 (630)
Q Consensus 350 ~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~-------dt~s----~~gh~~~----- 413 (630)
.+..++.++.+. .+|.++|+.+-+... ........+. .+|. +..++.+. .++. .......
T Consensus 105 ~v~v~~~~g~l~-a~d~~tG~~~W~~~~-~~~~~~~p~~-~~~~-v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~ 180 (376)
T 3q7m_A 105 HVYIGSEKAQVY-ALNTSDGTVAWQTKV-AGEALSRPVV-SDGL-VLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRG 180 (376)
T ss_dssp EEEEEETTSEEE-EEETTTCCEEEEEEC-SSCCCSCCEE-ETTE-EEEECTTSEEEEEETTTCCEEEEEECCC-----CC
T ss_pred EEEEEcCCCEEE-EEECCCCCEEEEEeC-CCceEcCCEE-ECCE-EEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecC
Confidence 677788889999 999999998876652 2111111111 1333 33333222 1111 0000000
Q ss_pred EEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccC--c-----CEEEEEEcc--CCCEEEEEeCCCcEEEEE
Q 006825 414 SSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHN--G-----SIWSIKFSL--DGRYLASAGEDCVIHVWQ 484 (630)
Q Consensus 414 Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt--~-----~V~sVaFSp--DG~~LASgS~DgtIrVWD 484 (630)
..........++.+..++.|..+|..+++.. ..+.... + .+..+...| .+..|+.++.++.|..+|
T Consensus 181 ~~~~~~~~~~v~~g~~~g~l~~~d~~tG~~~-----w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d 255 (376)
T 3q7m_A 181 ESAPTTAFGAAVVGGDNGRVSAVLMEQGQMI-----WQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALD 255 (376)
T ss_dssp CCCCEEETTEEEECCTTTEEEEEETTTCCEE-----EEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEE
T ss_pred CCCcEEECCEEEEEcCCCEEEEEECCCCcEE-----EEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEE
Confidence 0111112344788888999999999877532 1121110 0 000011111 345677788899999999
Q ss_pred CcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEe
Q 006825 485 VVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSF 563 (630)
Q Consensus 485 l~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL 563 (630)
..+++.+.... . .....+.. ++..+..+..++.+ ..++. +|+.+...
T Consensus 256 ~~tG~~~w~~~----~---~~~~~~~~--~~~~l~~~~~~g~l-----------------------~~~d~~tG~~~w~~ 303 (376)
T 3q7m_A 256 LRSGQIMWKRE----L---GSVNDFIV--DGNRIYLVDQNDRV-----------------------MALTIDGGVTLWTQ 303 (376)
T ss_dssp TTTCCEEEEEC----C---CCEEEEEE--ETTEEEEEETTCCE-----------------------EEEETTTCCEEEEE
T ss_pred CCCCcEEeecc----C---CCCCCceE--ECCEEEEEcCCCeE-----------------------EEEECCCCcEEEee
Confidence 99998775531 1 11223333 24455556667666 44554 55555554
Q ss_pred cc-CCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825 564 QG-HLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS 605 (630)
Q Consensus 564 ~G-Hs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~l~t~~ 605 (630)
.. ....+...... ++.|+.++.+|.|.+||..+|+.+..+.
T Consensus 304 ~~~~~~~~~~~~~~-~~~l~v~~~~g~l~~~d~~tG~~~~~~~ 345 (376)
T 3q7m_A 304 SDLLHRLLTSPVLY-NGNLVVGDSEGYLHWINVEDGRFVAQQK 345 (376)
T ss_dssp CTTTTSCCCCCEEE-TTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred cccCCCcccCCEEE-CCEEEEEeCCCeEEEEECCCCcEEEEEe
Confidence 42 12222223332 3788889999999999999999988876
No 234
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.89 E-value=0.0011 Score=67.55 Aligned_cols=197 Identities=8% Similarity=-0.061 Sum_probs=122.0
Q ss_pred cceeEEEeec----ceEeec-CCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceE
Q 006825 340 PIVQELMRRQ----NVEEGN-KDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSS 414 (630)
Q Consensus 340 ~~V~~Lafs~----~laSgS-~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~V 414 (630)
...+.|+|.+ ++.+|- .+.+++ +.|.+||+.+.++..+-...--.+++. |.++
T Consensus 21 ~f~~Gl~~~~dg~Lyvstg~~~~s~v~-~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~l------------------- 78 (266)
T 2iwa_A 21 AFTQGLVYAENDTLFESTGLYGRSSVR-QVALQTGKVENIHKMDDSYFGEGLTLL--NEKL------------------- 78 (266)
T ss_dssp CCEEEEEECSTTEEEEEECSTTTCEEE-EEETTTCCEEEEEECCTTCCEEEEEEE--TTEE-------------------
T ss_pred CCcccEEEeCCCeEEEECCCCCCCEEE-EEECCCCCEEEEEecCCCcceEEEEEe--CCEE-------------------
Confidence 4567888887 233332 357888 999999998887652211111122332 3222
Q ss_pred EEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeee
Q 006825 415 SATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGEL 494 (630)
Q Consensus 415 sa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l 494 (630)
.++.-.+++|.++|..+.+. +.++.--... .+.+++||+.|+.+..+++|.++|..+.+.+..+
T Consensus 79 ---------yv~t~~~~~v~viD~~t~~v-----~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I 142 (266)
T 2iwa_A 79 ---------YQVVWLKNIGFIYDRRTLSN-----IKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKH 142 (266)
T ss_dssp ---------EEEETTCSEEEEEETTTTEE-----EEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEE
T ss_pred ---------EEEEecCCEEEEEECCCCcE-----EEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEE
Confidence 23445678899999987653 3344211111 2335568887777777899999999998877776
Q ss_pred ecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEeccC-------
Q 006825 495 LEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGH------- 566 (630)
Q Consensus 495 ~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~GH------- 566 (630)
...........+..+.|. ++.+++....+..| .+.|. +++.+.++.-.
T Consensus 143 ~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V-----------------------~vID~~tg~V~~~I~~~g~~~~~~ 198 (266)
T 2iwa_A 143 NVKYNGHRVIRLNELEYI-NGEVWANIWQTDCI-----------------------ARISAKDGTLLGWILLPNLRKKLI 198 (266)
T ss_dssp ECEETTEECCCEEEEEEE-TTEEEEEETTSSEE-----------------------EEEETTTCCEEEEEECHHHHHHHH
T ss_pred EECCCCcccccceeEEEE-CCEEEEecCCCCeE-----------------------EEEECCCCcEEEEEECCCcccccc
Confidence 422111112235566776 67666665555666 55565 67776666421
Q ss_pred ------CCCEEEEEEcCC--CeEEEEECCCcEEEEeCCCC
Q 006825 567 ------LDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSK 598 (630)
Q Consensus 567 ------s~~V~sLafSPd--~~LaSgS~DgtVrIWDl~tg 598 (630)
....+.|+|+|+ .+++++....+|..-++...
T Consensus 199 ~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 199 DEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp HTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred cccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 134689999998 56778878888888887543
No 235
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=97.87 E-value=0.00019 Score=76.52 Aligned_cols=101 Identities=11% Similarity=-0.001 Sum_probs=69.7
Q ss_pred ccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeC
Q 006825 359 FDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGK 438 (630)
Q Consensus 359 tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~ 438 (630)
++- +.|..+++.+.++..|+. . .++|+|||+++..+... +.. ..-|..+..|.+||.
T Consensus 47 ~vs-vID~~t~~v~~~i~vG~~-P--~i~~spDg~~lyVan~~-----------------~~r--~~~G~~~~~VsviD~ 103 (368)
T 1mda_H 47 ENW-VSCAGCGVTLGHSLGAFL-S--LAVAGHSGSDFALASTS-----------------FAR--SAKGKRTDYVEVFDP 103 (368)
T ss_dssp EEE-EEETTTTEEEEEEEECTT-C--EEEECTTSSCEEEEEEE-----------------ETT--TTSSSEEEEEEEECT
T ss_pred eEE-EEECCCCeEEEEEeCCCC-C--ceEECCCCCEEEEEccc-----------------ccc--cccCCCCCEEEEEEC
Confidence 666 889999999999986765 4 69999999877532110 000 001124678999999
Q ss_pred CCCcccceeeeeEeccc-------CcCEEEEEEccCCCEEEEEeC--CCcEEE--EECcC
Q 006825 439 SCKDLTALYKCQEIQAH-------NGSIWSIKFSLDGRYLASAGE--DCVIHV--WQVVE 487 (630)
Q Consensus 439 ~~~el~~~~~v~tL~gH-------t~~V~sVaFSpDG~~LASgS~--DgtIrV--WDl~t 487 (630)
.+.+. +.++.-+ -..-..++|+|||++|+.+.. ...|.+ +|+.+
T Consensus 104 ~T~~v-----v~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t 158 (368)
T 1mda_H 104 VTFLP-----IADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD 158 (368)
T ss_dssp TTCCE-----EEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred CCCCE-----EEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence 88764 4444322 023457999999999998875 467888 99977
No 236
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.82 E-value=0.0029 Score=65.60 Aligned_cols=203 Identities=10% Similarity=-0.024 Sum_probs=112.1
Q ss_pred ceEeecCCCccEecccCCCCceeEEecCCccCCE-----EEEEEcCCCCeEEeecCCC-------CCccc-----cCCc-
Q 006825 350 NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSI-----RTVASSVTGHKERRSSDER-------DTSSE-----KGGR- 411 (630)
Q Consensus 350 ~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V-----~sVAfSpdG~~lasgS~D~-------dt~s~-----~gh~- 411 (630)
.+..++.++.+. .+|..+|+.+.+... ..... .+.+.. ++. +..+..+. .++.. ....
T Consensus 145 ~v~v~~~~g~l~-~~d~~tG~~~W~~~~-~~~~~~~~~~~~~~~~-~~~-v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~ 220 (376)
T 3q7m_A 145 LVLIHTSNGQLQ-ALNEADGAVKWTVNL-DMPSLSLRGESAPTTA-FGA-AVVGGDNGRVSAVLMEQGQMIWQQRISQAT 220 (376)
T ss_dssp EEEEECTTSEEE-EEETTTCCEEEEEEC-CC-----CCCCCCEEE-TTE-EEECCTTTEEEEEETTTCCEEEEEECCC--
T ss_pred EEEEEcCCCeEE-EEECCCCcEEEEEeC-CCCceeecCCCCcEEE-CCE-EEEEcCCCEEEEEECCCCcEEEEEecccCC
Confidence 677788899999 999999998877652 11110 111111 332 33333222 11110 0000
Q ss_pred ce--------E-EEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEE
Q 006825 412 RS--------S-SATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHV 482 (630)
Q Consensus 412 ~~--------V-sa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrV 482 (630)
.. + .........++.++.++.|..+|..+++.. .... ......+.. ++..|+.++.++.|..
T Consensus 221 ~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~-----w~~~--~~~~~~~~~--~~~~l~~~~~~g~l~~ 291 (376)
T 3q7m_A 221 GSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIM-----WKRE--LGSVNDFIV--DGNRIYLVDQNDRVMA 291 (376)
T ss_dssp ---------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEE-----EEEC--CCCEEEEEE--ETTEEEEEETTCCEEE
T ss_pred CCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEE-----eecc--CCCCCCceE--ECCEEEEEcCCCeEEE
Confidence 00 0 001111234788888999999999877532 1221 223444444 4667888889999999
Q ss_pred EECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceE
Q 006825 483 WQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPIC 561 (630)
Q Consensus 483 WDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~ 561 (630)
+|..+++....... .....+..... .+..++.+..++.+ .+++. +|+.+.
T Consensus 292 ~d~~tG~~~w~~~~----~~~~~~~~~~~--~~~~l~v~~~~g~l-----------------------~~~d~~tG~~~~ 342 (376)
T 3q7m_A 292 LTIDGGVTLWTQSD----LLHRLLTSPVL--YNGNLVVGDSEGYL-----------------------HWINVEDGRFVA 342 (376)
T ss_dssp EETTTCCEEEEECT----TTTSCCCCCEE--ETTEEEEECTTSEE-----------------------EEEETTTCCEEE
T ss_pred EECCCCcEEEeecc----cCCCcccCCEE--ECCEEEEEeCCCeE-----------------------EEEECCCCcEEE
Confidence 99999987655310 11111111111 23456666677877 56665 677666
Q ss_pred EeccCCCCEEEEEEcCCCeEEEEECCCcEEEEe
Q 006825 562 SFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWH 594 (630)
Q Consensus 562 tL~GHs~~V~sLafSPd~~LaSgS~DgtVrIWD 594 (630)
.+......+.......++.|+.++.||.|..|+
T Consensus 343 ~~~~~~~~~~~~~~~~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 343 QQKVDSSGFQTEPVAADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp EEECCTTCBCSCCEEETTEEEEEBTTSCEEEEE
T ss_pred EEecCCCcceeCCEEECCEEEEEeCCCEEEEEe
Confidence 665433333221111247888899999999987
No 237
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.75 E-value=0.002 Score=65.77 Aligned_cols=183 Identities=6% Similarity=-0.047 Sum_probs=109.3
Q ss_pred CccceeEEEeec--ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEE
Q 006825 338 HSPIVQELMRRQ--NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSS 415 (630)
Q Consensus 338 Hs~~V~~Lafs~--~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vs 415 (630)
-.++.+.|.|.. ..++.+.++.++ +.|.+||+.++++ ..- ........++|.+|
T Consensus 53 ~~~ftqGL~~~~~~Ly~stG~~g~v~-~iD~~Tgkv~~~~-l~~--~~FgeGit~~g~~L-------------------- 108 (268)
T 3nok_A 53 TNAFTQGLVFHQGHFFESTGHQGTLR-QLSLESAQPVWME-RLG--NIFAEGLASDGERL-------------------- 108 (268)
T ss_dssp TTCCEEEEEEETTEEEEEETTTTEEE-ECCSSCSSCSEEE-ECT--TCCEEEEEECSSCE--------------------
T ss_pred CccccceEEEECCEEEEEcCCCCEEE-EEECCCCcEEeEE-CCC--CcceeEEEEeCCEE--------------------
Confidence 345667788876 466777788899 9999999988766 221 11111122222222
Q ss_pred EeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeee
Q 006825 416 ATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELL 495 (630)
Q Consensus 416 a~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~ 495 (630)
....-.++++.+||..+.++ +.++.-- ..=+.++ +|++.|+.+..+.+|.++|..+.+.+..+.
T Consensus 109 --------y~ltw~~~~v~V~D~~Tl~~-----~~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~ 172 (268)
T 3nok_A 109 --------YQLTWTEGLLFTWSGMPPQR-----ERTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQ 172 (268)
T ss_dssp --------EEEESSSCEEEEEETTTTEE-----EEEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEE
T ss_pred --------EEEEccCCEEEEEECCcCcE-----EEEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEE
Confidence 23344678899999987654 3444321 2224444 578877777778999999999988877764
Q ss_pred cccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEecc---------
Q 006825 496 EKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQG--------- 565 (630)
Q Consensus 496 ~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~G--------- 565 (630)
..........+.-+.|. +|++++.......| .+.|. +|+.+..+.-
T Consensus 173 V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I-----------------------~vIDp~TG~V~~~Idl~~L~~~~~~ 228 (268)
T 3nok_A 173 VKLRGQPVELINELECA-NGVIYANIWHSSDV-----------------------LEIDPATGTVVGVIDASALTRAVAG 228 (268)
T ss_dssp CEETTEECCCEEEEEEE-TTEEEEEETTCSEE-----------------------EEECTTTCBEEEEEECHHHHHHHTT
T ss_pred eCCCCcccccccccEEe-CCEEEEEECCCCeE-----------------------EEEeCCCCcEEEEEECCCCcccccc
Confidence 22211112234455655 67666555455555 33444 4554444321
Q ss_pred ----CCCCEEEEEEcCC--CeEEEE
Q 006825 566 ----HLDDVLDLSWSKS--QHLLSS 584 (630)
Q Consensus 566 ----Hs~~V~sLafSPd--~~LaSg 584 (630)
-.+--+.|||.|+ .+++||
T Consensus 229 ~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 229 QVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp TCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred cccCcCCceEEEEEcCCCCEEEEeC
Confidence 1134588999997 556665
No 238
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.73 E-value=0.0018 Score=65.92 Aligned_cols=185 Identities=10% Similarity=0.012 Sum_probs=106.9
Q ss_pred CccceeEEEeec--ceEeecCCC--ccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcce
Q 006825 338 HSPIVQELMRRQ--NVEEGNKDS--FDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRS 413 (630)
Q Consensus 338 Hs~~V~~Lafs~--~laSgS~D~--tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~ 413 (630)
..++.+.|.|.. ..++++.++ .++ +.|.+||+.++++... .........++|.+|
T Consensus 41 ~~~ftqGL~~~~~~LyestG~~g~S~v~-~vD~~Tgkv~~~~~l~--~~~FgeGit~~g~~l------------------ 99 (262)
T 3nol_A 41 TKAFTEGFFYRNGYFYESTGLNGRSSIR-KVDIESGKTLQQIELG--KRYFGEGISDWKDKI------------------ 99 (262)
T ss_dssp TTCEEEEEEEETTEEEEEEEETTEEEEE-EECTTTCCEEEEEECC--TTCCEEEEEEETTEE------------------
T ss_pred CCcccceEEEECCEEEEECCCCCCceEE-EEECCCCcEEEEEecC--CccceeEEEEeCCEE------------------
Confidence 445668888877 345555554 888 9999999998877632 111111122222222
Q ss_pred EEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeee
Q 006825 414 SSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGE 493 (630)
Q Consensus 414 Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~ 493 (630)
....-.++++.+||..+.+. +.++.--. .=+.++ +|++.|+....+.+|.++|..+.+.+..
T Consensus 100 ----------y~ltw~~~~v~v~D~~t~~~-----~~ti~~~~-eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~ 161 (262)
T 3nol_A 100 ----------VGLTWKNGLGFVWNIRNLRQ-----VRSFNYDG-EGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRT 161 (262)
T ss_dssp ----------EEEESSSSEEEEEETTTCCE-----EEEEECSS-CCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEE
T ss_pred ----------EEEEeeCCEEEEEECccCcE-----EEEEECCC-CceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEE
Confidence 23334578999999987754 34443211 113343 5777666666678899999999888777
Q ss_pred eecccccCcc-cceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-CCCceEEecc------
Q 006825 494 LLEKQEDGHL-NMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQG------ 565 (630)
Q Consensus 494 l~~~~~~gh~-~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-sgk~l~tL~G------ 565 (630)
+.... .+.. ..+..+.+. +|++++..-.+..| .+.|. +|+.+..+.-
T Consensus 162 I~V~~-~g~~~~~lNELe~~-~G~lyan~w~~~~I-----------------------~vIDp~tG~V~~~Id~~~L~~~ 216 (262)
T 3nol_A 162 ITVTA-HGEELPELNELEWV-DGEIFANVWQTNKI-----------------------VRIDPETGKVTGIIDLNGILAE 216 (262)
T ss_dssp EECEE-TTEECCCEEEEEEE-TTEEEEEETTSSEE-----------------------EEECTTTCBEEEEEECTTGGGG
T ss_pred EEecc-CCccccccceeEEE-CCEEEEEEccCCeE-----------------------EEEECCCCcEEEEEECCcCccc
Confidence 64221 1211 333445554 67666655455566 33333 4444444321
Q ss_pred -----C-CCCEEEEEEcCC-CeEEEEEC
Q 006825 566 -----H-LDDVLDLSWSKS-QHLLSSSM 586 (630)
Q Consensus 566 -----H-s~~V~sLafSPd-~~LaSgS~ 586 (630)
. ..--+.|||+|+ +.|...+.
T Consensus 217 ~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 217 AGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp SCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred cccccCcCCceEEEEEcCCCCEEEEECC
Confidence 1 124588999998 55555543
No 239
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.67 E-value=0.0036 Score=71.57 Aligned_cols=54 Identities=7% Similarity=0.020 Sum_probs=39.8
Q ss_pred EEEeC-CCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825 551 TVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS 605 (630)
Q Consensus 551 ~Vwdl-sgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~ 605 (630)
..|++ +|+.+-++..+. .+....+... ++|+.++.|+.|++||..+|+.+..+.
T Consensus 441 ~A~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~ 496 (668)
T 1kv9_A 441 LAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFE 496 (668)
T ss_dssp EEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EEEeCCCCcEEEEccCCC-CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEec
Confidence 56776 787776665433 2333333334 888899999999999999999999886
No 240
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=97.60 E-value=0.0045 Score=67.67 Aligned_cols=143 Identities=7% Similarity=-0.133 Sum_probs=79.3
Q ss_pred CCCccEecccCCCCceeEEecCC-ccCCEEEEEE--cCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcE
Q 006825 356 KDSFDLNNNGSSGGGMKSKKKGS-WFKSIRTVAS--SVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVR 432 (630)
Q Consensus 356 ~D~tvr~vWD~~tG~~~~~lk~g-H~~~V~sVAf--SpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~ 432 (630)
.+.+|. +||+.+++.++++..+ -...-+.|+| +|+|+++..+.. +.. -..+++
T Consensus 226 ~~d~V~-v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e----------------~~~-------~~Lss~ 281 (462)
T 2ece_A 226 YGNRIH-FWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMV----------------VSL-------KDLSSS 281 (462)
T ss_dssp SCCEEE-EEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEE----------------EET-------TTCCEE
T ss_pred cCCEEE-EEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEe----------------eec-------cCCCce
Confidence 368888 9999999888888754 2223344555 999886542211 000 002334
Q ss_pred EEEEeCCCCcccceeeee----Eecc-----------cCcCEEEEEEccCCCEEEEEeC-CCcEEEEECcCC---ceeee
Q 006825 433 VRQYGKSCKDLTALYKCQ----EIQA-----------HNGSIWSIKFSLDGRYLASAGE-DCVIHVWQVVES---ERKGE 493 (630)
Q Consensus 433 VriWd~~~~el~~~~~v~----tL~g-----------Ht~~V~sVaFSpDG~~LASgS~-DgtIrVWDl~tg---~~~~~ 493 (630)
|.+|....+++.....+. .+.+ -......|.+|+||++|..+.. .+.|.++|+... +.+..
T Consensus 282 V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~ 361 (462)
T 2ece_A 282 IWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGK 361 (462)
T ss_dssp EEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEE
T ss_pred EEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEE
Confidence 444433222221111100 0000 0235789999999998887764 678999998633 33333
Q ss_pred eecccc---cCc------ccceEEEEECCCCCEEEEee
Q 006825 494 LLEKQE---DGH------LNMLLLANGSPEPTSLSPKH 522 (630)
Q Consensus 494 l~~~~~---~gh------~~~V~svafSpdg~~lasgs 522 (630)
+..... ..| ...-..++++|||++|+++.
T Consensus 362 I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 362 VKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp EECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 321100 001 01246789999999888874
No 241
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.57 E-value=0.036 Score=54.60 Aligned_cols=157 Identities=11% Similarity=0.043 Sum_probs=90.8
Q ss_pred EEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCC-EEEEEeCCCcEEEEECcCCceeeeeecccccCcc
Q 006825 425 FHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGR-YLASAGEDCVIHVWQVVESERKGELLEKQEDGHL 503 (630)
Q Consensus 425 ~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~-~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~ 503 (630)
++-...++|..++...... ...+.........|++++++. ++++-...+.|.++++.... ...+. ....
T Consensus 52 ~~d~~~~~I~~~~~~g~~~-----~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~-~~~~~----~~~~ 121 (267)
T 1npe_A 52 WTDISEPSIGRASLHGGEP-----TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ-RRVLF----DTGL 121 (267)
T ss_dssp EEETTTTEEEEEESSSCCC-----EEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEE----CSSC
T ss_pred EEECCCCEEEEEecCCCCc-----EEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC-EEEEE----ECCC
Confidence 3444567788888765532 112222334678999999755 45555567889999986432 22221 1112
Q ss_pred cceEEEEECCCCCEEEEeeC---CCeeeeecccccccccccccCccccccEEEeCCCCceEEec-cCCCCEEEEEEcCC-
Q 006825 504 NMLLLANGSPEPTSLSPKHL---DNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ-GHLDDVLDLSWSKS- 578 (630)
Q Consensus 504 ~~V~svafSpdg~~lasgs~---Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~-GHs~~V~sLafSPd- 578 (630)
.....++++|++..|..+.. .+.| ..+++.++....+. ........++|+|+
T Consensus 122 ~~P~~i~vd~~~g~lyv~~~~~~~~~I-----------------------~~~~~dg~~~~~~~~~~~~~P~gia~d~~~ 178 (267)
T 1npe_A 122 VNPRGIVTDPVRGNLYWTDWNRDNPKI-----------------------ETSHMDGTNRRILAQDNLGLPNGLTFDAFS 178 (267)
T ss_dssp SSEEEEEEETTTTEEEEEECCSSSCEE-----------------------EEEETTSCCCEEEECTTCSCEEEEEEETTT
T ss_pred CCccEEEEeeCCCEEEEEECCCCCcEE-----------------------EEEecCCCCcEEEEECCCCCCcEEEEcCCC
Confidence 45678999996544443322 2344 34444444433332 22345789999997
Q ss_pred CeE-EEEECCCcEEEEeCCCCcEEEEEecCCceEEEE
Q 006825 579 QHL-LSSSMDKTVRLWHLSSKTCLKIFSHSDYDISLV 614 (630)
Q Consensus 579 ~~L-aSgS~DgtVrIWDl~tg~~l~t~~H~~~V~sVa 614 (630)
++| ++-...+.|.++|+........+........|+
T Consensus 179 ~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~ 215 (267)
T 1npe_A 179 SQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVT 215 (267)
T ss_dssp TEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEE
T ss_pred CEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEE
Confidence 554 566667899999997654433333333445555
No 242
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=97.55 E-value=0.0077 Score=65.86 Aligned_cols=231 Identities=13% Similarity=0.012 Sum_probs=134.2
Q ss_pred ceEeecCCCccEecccCCCC----ceeEEe-------cCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEee
Q 006825 350 NVEEGNKDSFDLNNNGSSGG----GMKSKK-------KGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATD 418 (630)
Q Consensus 350 ~laSgS~D~tvr~vWD~~tG----~~~~~l-------k~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~ 418 (630)
.+++|-.+.+|. +.|+++. +..++. +.| ...=..+.++|+| .+++...+
T Consensus 98 l~v~~l~s~~I~-viD~~t~p~~p~~~k~ie~~~~~~~~g-~s~Ph~~~~~pdG-i~Vs~~g~----------------- 157 (462)
T 2ece_A 98 LIVPGLRSSRIY-IIDTKPNPREPKIIKVIEPEEVKKVSG-YSRLHTVHCGPDA-IYISALGN----------------- 157 (462)
T ss_dssp EEEEBTTTCCEE-EEECCSCTTSCEEEEEECHHHHHHHHC-EEEEEEEEECSSC-EEEEEEEE-----------------
T ss_pred EEEccCCCCeEE-EEECCCCCCCceeeeeechhhcccccC-CCcccceeECCCe-EEEEcCCC-----------------
Confidence 577888889999 9998765 344444 111 1123357888998 44432111
Q ss_pred cCCCeEEEecCCcEEEEEeCCCCcccceeeeeEec--ccC-cCEEEEEEccCCCEEEEEe-------------------C
Q 006825 419 DSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQ--AHN-GSIWSIKFSLDGRYLASAG-------------------E 476 (630)
Q Consensus 419 ~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~--gHt-~~V~sVaFSpDG~~LASgS-------------------~ 476 (630)
. .|...+.|.++|..+.+. +.++. ++. ..-+.+-|+|+++.++|.. .
T Consensus 158 -~-----~g~~~g~v~vlD~~T~~v-----~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~ 226 (462)
T 2ece_A 158 -E-----EGEGPGGILMLDHYSFEP-----LGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRY 226 (462)
T ss_dssp -T-----TSCSCCEEEEECTTTCCE-----EEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHS
T ss_pred -c-----CCCCCCeEEEEECCCCeE-----EEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhcc
Confidence 0 123356788898877653 33343 122 2345688999999999884 3
Q ss_pred CCcEEEEECcCCceeeeeecccccC-cccceEEEEE--CCCCCEEEEeeC------CCeeeeecccccccccccccCccc
Q 006825 477 DCVIHVWQVVESERKGELLEKQEDG-HLNMLLLANG--SPEPTSLSPKHL------DNHLEKKRRGRSINRKSLSLDHMV 547 (630)
Q Consensus 477 DgtIrVWDl~tg~~~~~l~~~~~~g-h~~~V~svaf--Spdg~~lasgs~------Dg~I~i~~~~~~~~~~s~s~d~~i 547 (630)
+.+|.+||+.+++.+.++. .+ .......+.| +|+++++..+.. +++|.++.... +..
T Consensus 227 ~d~V~v~D~~~~k~~~tI~----vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~----------g~~ 292 (462)
T 2ece_A 227 GNRIHFWDLRKRKRIHSLT----LGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED----------GKW 292 (462)
T ss_dssp CCEEEEEETTTTEEEEEEE----SCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET----------TEE
T ss_pred CCEEEEEECCCCcEeeEEe----cCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC----------Cce
Confidence 7899999999887666653 22 1123334444 999998887664 44554333211 000
Q ss_pred cccEEEeCCCC-ceEEe-------ccCCCCEEEEEEcCC-CeEEEEE-CCCcEEEEeCC---CCcEEEEEe-cCC-----
Q 006825 548 VPETVFALSDK-PICSF-------QGHLDDVLDLSWSKS-QHLLSSS-MDKTVRLWHLS---SKTCLKIFS-HSD----- 608 (630)
Q Consensus 548 ~~~~Vwdlsgk-~l~tL-------~GHs~~V~sLafSPd-~~LaSgS-~DgtVrIWDl~---tg~~l~t~~-H~~----- 608 (630)
....+.++... ...++ .+-......|.++|| ++|..+. ..+.|.++|+. +.+.+..+. ...
T Consensus 293 ~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~ 372 (462)
T 2ece_A 293 NAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRAD 372 (462)
T ss_dssp EEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBC
T ss_pred eEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeecccc
Confidence 11122222110 00001 111235688999999 6665444 57899999986 345666665 311
Q ss_pred ---------ceEEEE-cCCCcEEEEec
Q 006825 609 ---------YDISLV-DRLMLRFAYGA 625 (630)
Q Consensus 609 ---------~V~sVa-s~~~~~lAsgs 625 (630)
.-..++ ++++.++..+.
T Consensus 373 ~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 373 HPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred ccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 246677 88887776654
No 243
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.54 E-value=0.0037 Score=71.48 Aligned_cols=73 Identities=10% Similarity=-0.068 Sum_probs=47.6
Q ss_pred EEEEEccCCCEEEEEeCCCc-------------------EEEEECcCCceeeeeecccccCcc-------cceEEEEECC
Q 006825 460 WSIKFSLDGRYLASAGEDCV-------------------IHVWQVVESERKGELLEKQEDGHL-------NMLLLANGSP 513 (630)
Q Consensus 460 ~sVaFSpDG~~LASgS~Dgt-------------------IrVWDl~tg~~~~~l~~~~~~gh~-------~~V~svafSp 513 (630)
..+++.|+..+++.+..++. |..+|+.+|+.+..+.. ..|. .......+..
T Consensus 233 ~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~---~~~~~wd~~~~~~~~~~d~~~ 309 (668)
T 1kv9_A 233 DSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQV---TPGDSWDFTATQQITLAELNI 309 (668)
T ss_dssp SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEES---STTCCSCCCCCSCEEEEEEEE
T ss_pred cceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeec---CCCccccccCCCCcEEEEecc
Confidence 35788898888888877763 99999999998766421 1121 2222222233
Q ss_pred CCC---EEEEeeCCCeeeeeccccc
Q 006825 514 EPT---SLSPKHLDNHLEKKRRGRS 535 (630)
Q Consensus 514 dg~---~lasgs~Dg~I~i~~~~~~ 535 (630)
+|+ +++.+..++.+...+....
T Consensus 310 ~G~~~~~v~~~~~~G~l~~lD~~tG 334 (668)
T 1kv9_A 310 DGKPRKVLMQAPKNGFFYVLDRTNG 334 (668)
T ss_dssp TTEEEEEEEECCTTSEEEEEETTTC
T ss_pred CCcEEEEEEEECCCCEEEEEECCCC
Confidence 554 6777888888877765543
No 244
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.52 E-value=0.24 Score=57.03 Aligned_cols=258 Identities=10% Similarity=0.026 Sum_probs=150.7
Q ss_pred ccceeEEEeec--ceEeecCCCccEecccCCCCceeEEecCC-------ccCCEEEEEEcCCCCeEEeecCCC------C
Q 006825 339 SPIVQELMRRQ--NVEEGNKDSFDLNNNGSSGGGMKSKKKGS-------WFKSIRTVASSVTGHKERRSSDER------D 403 (630)
Q Consensus 339 s~~V~~Lafs~--~laSgS~D~tvr~vWD~~tG~~~~~lk~g-------H~~~V~sVAfSpdG~~lasgS~D~------d 403 (630)
...|.+|...+ .|--|+.+..+. .||..+++...... . ....|++++..++|.+.+.... + .
T Consensus 214 ~~~i~~i~~d~~g~lwigt~~~Gl~-~~~~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~ 290 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIWVATEGAGLF-LINPKTKEIKNYLH-SPSNPKSISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEG 290 (795)
T ss_dssp CCCEEEEEEEETTEEEEEEBSSCEE-EEETTTTEEEEECC-CTTCTTSCSCSBEEEEEECTTSCEEEEESS-CEEEEETT
T ss_pred CCeeEEEEEcCCCCEEEEECCCCeE-EEeCCCCeEEEeec-CCCCccccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCC
Confidence 45678877655 455566555677 78887776544322 2 2357999999999886543322 3 1
Q ss_pred Ccc-----------ccCCcceEEEeecCCCe-EEEecCCcEEEEEeCCCCcccceeeeeEecc-cCcCEEEEEEccCCCE
Q 006825 404 TSS-----------EKGGRRSSSATDDSQDV-SFHGQERVRVRQYGKSCKDLTALYKCQEIQA-HNGSIWSIKFSLDGRY 470 (630)
Q Consensus 404 t~s-----------~~gh~~~Vsa~~~s~d~-l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~g-Ht~~V~sVaFSpDG~~ 470 (630)
+.. ..-....|.++....++ ++.|..++-|..|+.....+........-.+ ....|.+|...++|++
T Consensus 291 ~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~l 370 (795)
T 4a2l_A 291 TDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNL 370 (795)
T ss_dssp TTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCE
T ss_pred CCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCE
Confidence 111 00123457777666666 8999988888888875543321110000000 2456999999999985
Q ss_pred EEEEeCCCcEEEEECcCCceeeeeecccc---cCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccc
Q 006825 471 LASAGEDCVIHVWQVVESERKGELLEKQE---DGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMV 547 (630)
Q Consensus 471 LASgS~DgtIrVWDl~tg~~~~~l~~~~~---~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i 547 (630)
.+ |..++-|..|+..++........... .-....|.++...+++.+|..|..++-+
T Consensus 371 Wi-Gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl-------------------- 429 (795)
T 4a2l_A 371 WI-GTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGL-------------------- 429 (795)
T ss_dssp EE-EESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEE--------------------
T ss_pred EE-EECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCce--------------------
Confidence 44 77777799999877654322110000 0123568889888888834445454445
Q ss_pred cccEEEeCCCCceEEec-----cCCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEe-------cCCceEEEE-
Q 006825 548 VPETVFALSDKPICSFQ-----GHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-------HSDYDISLV- 614 (630)
Q Consensus 548 ~~~~Vwdlsgk~l~tL~-----GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~l~t~~-------H~~~V~sVa- 614 (630)
..++.....+..+. -+...|.++...+++.|..|.. +-|.+||..+++...... ....|.++.
T Consensus 430 ---~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 505 (795)
T 4a2l_A 430 ---SILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFR 505 (795)
T ss_dssp ---EEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEE
T ss_pred ---eEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEE
Confidence 33443222222222 1345789999887755555555 458899998876543221 236788888
Q ss_pred cCCC-cEEEEe
Q 006825 615 DRLM-LRFAYG 624 (630)
Q Consensus 615 s~~~-~~lAsg 624 (630)
++.+ +++++.
T Consensus 506 d~~g~lWigt~ 516 (795)
T 4a2l_A 506 DSHKRLWIGGE 516 (795)
T ss_dssp CTTCCEEEEES
T ss_pred CCCCCEEEEeC
Confidence 4444 455543
No 245
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.50 E-value=0.25 Score=56.82 Aligned_cols=255 Identities=7% Similarity=-0.033 Sum_probs=154.0
Q ss_pred ccceeEEEeec--ceEeecCCCccEecccCCCCceeEEecC------CccCCEEEEEEcCCCCeEEeecCCC------CC
Q 006825 339 SPIVQELMRRQ--NVEEGNKDSFDLNNNGSSGGGMKSKKKG------SWFKSIRTVASSVTGHKERRSSDER------DT 404 (630)
Q Consensus 339 s~~V~~Lafs~--~laSgS~D~tvr~vWD~~tG~~~~~lk~------gH~~~V~sVAfSpdG~~lasgS~D~------dt 404 (630)
...|.+|+..+ .|.-|+.. .+. +||..++........ -....|.++...++|.+-+.....+ ..
T Consensus 262 ~~~i~~i~~d~~g~lWigt~~-Gl~-~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~ 339 (795)
T 4a2l_A 262 SNYIRSLAMDSQNRLWIGTFN-DLN-IYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIR 339 (795)
T ss_dssp CSBEEEEEECTTSCEEEEESS-CEE-EEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGG
T ss_pred CCeEEEEEEcCCCCEEEEeCC-hhh-eEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCc
Confidence 35688888865 55556655 677 888877765443210 1236799999999988654332222 11
Q ss_pred cc---cc------C-CcceEEEeecCCCe-EEEecCCcEEEEEeCCCCcccceeeeeEe---cccCcCEEEEEEccCCCE
Q 006825 405 SS---EK------G-GRRSSSATDDSQDV-SFHGQERVRVRQYGKSCKDLTALYKCQEI---QAHNGSIWSIKFSLDGRY 470 (630)
Q Consensus 405 ~s---~~------g-h~~~Vsa~~~s~d~-l~Sgs~Dg~VriWd~~~~el~~~~~v~tL---~gHt~~V~sVaFSpDG~~ 470 (630)
.. .. + ....|.++....++ ++.|..++-|..|+..++.+........- .-....|.++...++|++
T Consensus 340 ~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~ 419 (795)
T 4a2l_A 340 NRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSL 419 (795)
T ss_dssp GSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTE
T ss_pred ccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCE
Confidence 11 00 0 23457777666666 99999887889999876643221100000 012367999999999985
Q ss_pred EEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCcccccc
Q 006825 471 LASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPE 550 (630)
Q Consensus 471 LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~ 550 (630)
|..|..++-|.+||..+++...... .........|.++...+++.+.+... .| +
T Consensus 420 lWigt~~~Gl~~~d~~~~~~~~~~~-~~~~l~~~~v~~i~~d~~g~lwigt~-~G-l----------------------- 473 (795)
T 4a2l_A 420 VYIGTHAGGLSILHRNSGQVENFNQ-RNSQLVNENVYAILPDGEGNLWLGTL-SA-L----------------------- 473 (795)
T ss_dssp EEEEETTTEEEEEETTTCCEEEECT-TTSCCSCSCEEEEEECSSSCEEEEES-SC-E-----------------------
T ss_pred EEEEeCcCceeEEeCCCCcEEEeec-CCCCcCCCeeEEEEECCCCCEEEEec-Cc-e-----------------------
Confidence 6667777789999998765433211 00012345788999888888776653 44 3
Q ss_pred EEEeCCCCceEEec-------cCCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEe--------cCCceEEEE-
Q 006825 551 TVFALSDKPICSFQ-------GHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS--------HSDYDISLV- 614 (630)
Q Consensus 551 ~Vwdlsgk~l~tL~-------GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~l~t~~--------H~~~V~sVa- 614 (630)
.+|+........+. -+...|.++...+++.|..|.. +-|.+||..+++. .+. ....|.+|.
T Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~ 550 (795)
T 4a2l_A 474 VRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYE 550 (795)
T ss_dssp EEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEE
T ss_pred eEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEE
Confidence 23333222222221 1235789999888855555555 5688899888776 332 345788988
Q ss_pred cCCC-cEEEEe
Q 006825 615 DRLM-LRFAYG 624 (630)
Q Consensus 615 s~~~-~~lAsg 624 (630)
++.+ +++++.
T Consensus 551 d~~g~lWigT~ 561 (795)
T 4a2l_A 551 ASNGIIWVGTR 561 (795)
T ss_dssp CTTSCEEEEES
T ss_pred CCCCCEEEEeC
Confidence 5554 455554
No 246
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.49 E-value=0.013 Score=58.98 Aligned_cols=149 Identities=10% Similarity=-0.016 Sum_probs=85.8
Q ss_pred ccceeEEEeec--ceEeecCC--CccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceE
Q 006825 339 SPIVQELMRRQ--NVEEGNKD--SFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSS 414 (630)
Q Consensus 339 s~~V~~Lafs~--~laSgS~D--~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~V 414 (630)
...++.|.|.+ ..++.+.+ ..++ ..|.++|+.+++....- ........++|.+|
T Consensus 20 ~~ftqGL~~~~~~LyestG~~g~S~v~-~vD~~tgkv~~~~~l~~--~~fgeGi~~~~~~l------------------- 77 (243)
T 3mbr_X 20 TAFTEGLFYLRGHLYESTGETGRSSVR-KVDLETGRILQRAEVPP--PYFGAGIVAWRDRL------------------- 77 (243)
T ss_dssp TCCEEEEEEETTEEEEEECCTTSCEEE-EEETTTCCEEEEEECCT--TCCEEEEEEETTEE-------------------
T ss_pred ccccccEEEECCEEEEECCCCCCceEE-EEECCCCCEEEEEeCCC--CcceeEEEEeCCEE-------------------
Confidence 35688899988 34454554 4888 99999999988776211 11111112222222
Q ss_pred EEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeee
Q 006825 415 SATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGEL 494 (630)
Q Consensus 415 sa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l 494 (630)
....-.++++.+||..+.++ +.++.--. .=+.++ +|++.|+.+..+.+|.++|..+.+.+..+
T Consensus 78 ---------y~ltw~~~~v~v~D~~tl~~-----~~ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I 140 (243)
T 3mbr_X 78 ---------IQLTWRNHEGFVYDLATLTP-----RARFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSI 140 (243)
T ss_dssp ---------EEEESSSSEEEEEETTTTEE-----EEEEECSS-CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEE
T ss_pred ---------EEEEeeCCEEEEEECCcCcE-----EEEEeCCC-CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEE
Confidence 23345678899999987653 34443222 224454 46766666666889999999998877775
Q ss_pred ecccccCcccceEEEEECCCCCEEEEeeCCCee
Q 006825 495 LEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHL 527 (630)
Q Consensus 495 ~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I 527 (630)
...........+.-+.+. +|++++.......|
T Consensus 141 ~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I 172 (243)
T 3mbr_X 141 KVTAGGRPLDNLNELEWV-NGELLANVWLTSRI 172 (243)
T ss_dssp ECEETTEECCCEEEEEEE-TTEEEEEETTTTEE
T ss_pred EEccCCcccccceeeEEe-CCEEEEEECCCCeE
Confidence 422100011233444444 56666555445555
No 247
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.39 E-value=0.028 Score=63.41 Aligned_cols=236 Identities=9% Similarity=-0.044 Sum_probs=131.8
Q ss_pred eEeecCCCccEecccCCCCceeEEecCCccCCEEEEEE-c-CCCCeEEeecCCCCCccccCCcceEEEeecCCCe--EE-
Q 006825 351 VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVAS-S-VTGHKERRSSDERDTSSEKGGRRSSSATDDSQDV--SF- 425 (630)
Q Consensus 351 laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAf-S-pdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~--l~- 425 (630)
.++...+..|. +=|+.+.++...+...-......+++ + |+++++..++... +...+++ |.
T Consensus 105 fVnd~~~~rVa-vIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~--------------~p~~~dg~~l~~ 169 (595)
T 1fwx_A 105 FMNDKANTRVA-RVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDE--------------TPLVNDGTNMED 169 (595)
T ss_dssp EEEETTTTEEE-EEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSC--------------EESSCSSSSTTC
T ss_pred EEEcCCCCEEE-EEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccc--------------cccCCCCccccc
Confidence 44555566677 78999999888554333456778898 5 9999887654332 0111111 11
Q ss_pred EecCCcEEEEEeCCCCcccceeeeeEec-ccCcCEEEEEEccCCCEEEEEeCCC--------------------------
Q 006825 426 HGQERVRVRQYGKSCKDLTALYKCQEIQ-AHNGSIWSIKFSLDGRYLASAGEDC-------------------------- 478 (630)
Q Consensus 426 Sgs~Dg~VriWd~~~~el~~~~~v~tL~-gHt~~V~sVaFSpDG~~LASgS~Dg-------------------------- 478 (630)
..-.++.+-+.|..+.+. +.++. +- .-.-++++|||+++++.+.+.
T Consensus 170 ~~~~~~~vtvID~~t~~v-----~~qI~Vgg--~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~ 242 (595)
T 1fwx_A 170 VANYVNVFTAVDADKWEV-----AWQVLVSG--NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE 242 (595)
T ss_dssp GGGEEEEEEEEETTTTEE-----EEEEEESS--CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH
T ss_pred ccccCceEEEEECCCCeE-----EEEEEeCC--CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeecccee
Confidence 122345567777766543 22221 11 234577888999888888653
Q ss_pred ------------cEEEEECcC--Cce-eeeeecccccCcccceEEEEECCCCCEEEEee-CCCeeeeecccccccccccc
Q 006825 479 ------------VIHVWQVVE--SER-KGELLEKQEDGHLNMLLLANGSPEPTSLSPKH-LDNHLEKKRRGRSINRKSLS 542 (630)
Q Consensus 479 ------------tIrVWDl~t--g~~-~~~l~~~~~~gh~~~V~svafSpdg~~lasgs-~Dg~I~i~~~~~~~~~~s~s 542 (630)
.|.|.|..+ +.. +..+. .......+.++|||++++.+. .+.+|.+.+..+.....
T Consensus 243 ~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ip------vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~--- 313 (595)
T 1fwx_A 243 KAIAAGDYQELNGVKVVDGRKEASSLFTRYIP------IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVF--- 313 (595)
T ss_dssp HHHHHTCSEEETTEEEEECSGGGCCSSEEEEE------EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHH---
T ss_pred EeccCCCeeEECcEEEEeCcccCCceeEEEEe------cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECccccccc---
Confidence 355555544 222 22211 012334789999999877654 45566444433211000
Q ss_pred cCccccccEEEeCCCCceEEeccCCCCEEEEEEcCCC-eEEEEECCCcEEEEeCCC----------CcEEEEEe-cCCce
Q 006825 543 LDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQ-HLLSSSMDKTVRLWHLSS----------KTCLKIFS-HSDYD 610 (630)
Q Consensus 543 ~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd~-~LaSgS~DgtVrIWDl~t----------g~~l~t~~-H~~~V 610 (630)
++.+ +.....+.++. -......++|+|++ .+++.-.|++|-+||+.+ .+.+.++. |-.+-
T Consensus 314 -~~~l------~~~~~v~~~v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpG 385 (595)
T 1fwx_A 314 -YENA------DPRSAVVAEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPG 385 (595)
T ss_dssp -HSCC------CGGGGEEECCB-CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEE
T ss_pred -cccc------CcccceEEEcC-CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccc
Confidence 0000 00011222222 22346889999995 445667799999999987 56777777 65432
Q ss_pred -EEEE-----cCCCcEEEEec
Q 006825 611 -ISLV-----DRLMLRFAYGA 625 (630)
Q Consensus 611 -~sVa-----s~~~~~lAsgs 625 (630)
.+.. .+++.++.+..
T Consensus 386 h~~~~~g~t~~~DGk~l~~~N 406 (595)
T 1fwx_A 386 HLKTVMGETLDATNDWLVCLS 406 (595)
T ss_dssp EEEETTTTSTTCCSSEEEEEE
T ss_pred cceeccceEeCCCCCEEEEcC
Confidence 2221 78888887663
No 248
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.36 E-value=0.037 Score=56.22 Aligned_cols=219 Identities=9% Similarity=-0.023 Sum_probs=118.4
Q ss_pred eEEEeec---ceEeecCCCccEecccCCCCceeEEe-cC-----------------CccCCEEEEEEcC-CCCeEEeecC
Q 006825 343 QELMRRQ---NVEEGNKDSFDLNNNGSSGGGMKSKK-KG-----------------SWFKSIRTVASSV-TGHKERRSSD 400 (630)
Q Consensus 343 ~~Lafs~---~laSgS~D~tvr~vWD~~tG~~~~~l-k~-----------------gH~~~V~sVAfSp-dG~~lasgS~ 400 (630)
..+++.+ .+.++..++.+. .|+..+++...-. .. ........+++.+ +|.++++...
T Consensus 22 ~~i~~d~~g~~l~v~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~ 100 (322)
T 2fp8_A 22 NSFTFDSTNKGFYTSVQDGRVI-KYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCY 100 (322)
T ss_dssp CCEECCTTCSSEEEECTTSEEE-EECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETT
T ss_pred eEEEEcCCCCEEEEEcCCCeEE-EECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECC
Confidence 3445544 266667777787 7887665433211 00 0123578899997 7776665332
Q ss_pred CC------CCcc---c----cC-CcceEEEeecCC-Ce-EEEec------------------CCcEEEEEeCCCCcccce
Q 006825 401 ER------DTSS---E----KG-GRRSSSATDDSQ-DV-SFHGQ------------------ERVRVRQYGKSCKDLTAL 446 (630)
Q Consensus 401 D~------dt~s---~----~g-h~~~Vsa~~~s~-d~-l~Sgs------------------~Dg~VriWd~~~~el~~~ 446 (630)
.. ++.. + .+ .......+.+.+ ++ ++.+. ..+.|..|+..+++..
T Consensus 101 ~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~-- 178 (322)
T 2fp8_A 101 YHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETT-- 178 (322)
T ss_dssp TEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEE--
T ss_pred CCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEE--
Confidence 21 1110 0 00 011233444555 44 33322 1366777776554321
Q ss_pred eeeeEecccCcCEEEEEEccCCCEEEEE-eCCCcEEEEECcCCc--eeeeeecccccCcccceEEEEECCCCCEEEEeeC
Q 006825 447 YKCQEIQAHNGSIWSIKFSLDGRYLASA-GEDCVIHVWQVVESE--RKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHL 523 (630)
Q Consensus 447 ~~v~tL~gHt~~V~sVaFSpDG~~LASg-S~DgtIrVWDl~tg~--~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~ 523 (630)
.+.........|+|+|+|++|..+ ...+.|.+|++.... ....+. ... + ...+++.++|.++++...
T Consensus 179 ----~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~--~~~---g-P~gi~~d~~G~l~va~~~ 248 (322)
T 2fp8_A 179 ----LLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLV--KIP---N-PGNIKRNADGHFWVSSSE 248 (322)
T ss_dssp ----EEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEE--ECS---S-EEEEEECTTSCEEEEEEE
T ss_pred ----EeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEE--eCC---C-CCCeEECCCCCEEEEecC
Confidence 111112234579999999865544 566889999987532 111111 011 2 567889999987777643
Q ss_pred ----------CCeeeeecccccccccccccCccccccEEEeCCCCceEEeccC----CCCEEEEEEcCCCeEEEEECCCc
Q 006825 524 ----------DNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGH----LDDVLDLSWSKSQHLLSSSMDKT 589 (630)
Q Consensus 524 ----------Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GH----s~~V~sLafSPd~~LaSgS~Dgt 589 (630)
.+.| ..++..++.+..+... -..++.+++....++++....+.
T Consensus 249 ~~~~~~~~~~~~~v-----------------------~~~d~~G~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~ 305 (322)
T 2fp8_A 249 ELDGNMHGRVDPKG-----------------------IKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGS 305 (322)
T ss_dssp ETTSSTTSCEEEEE-----------------------EEECTTSCEEEEEECCTTTTTSCCCEEEEETTEEEEECSSCSE
T ss_pred cccccccCCCccEE-----------------------EEECCCCCEEEEEECCCCCccccceEEEEeCCEEEEeecCCCc
Confidence 1222 4455566666666543 23567777743255566667888
Q ss_pred EEEEeCCC
Q 006825 590 VRLWHLSS 597 (630)
Q Consensus 590 VrIWDl~t 597 (630)
|..+++..
T Consensus 306 i~~~~~~~ 313 (322)
T 2fp8_A 306 VGILVYDK 313 (322)
T ss_dssp EEEEEC--
T ss_pred eEEEeccc
Confidence 98888764
No 249
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.34 E-value=0.012 Score=59.81 Aligned_cols=175 Identities=10% Similarity=-0.011 Sum_probs=102.4
Q ss_pred ceeEEEEcCCCceEeeecceee-ecCccceeEEEeec-ce-EeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcC
Q 006825 314 TWKKVKEVGTGRQLTIEEFEMC-VGHSPIVQELMRRQ-NV-EEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSV 390 (630)
Q Consensus 314 ~~~~l~dv~TG~~lt~eef~~l-~GHs~~V~~Lafs~-~l-aSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSp 390 (630)
...+..|+.||+.+ .++ .+.......+++.. .| ++.-.++++. ++|.++++.+.++..+ ... ...+++
T Consensus 44 s~v~~iD~~tg~v~-----~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~-viD~~t~~v~~~i~~g-~~~--g~glt~ 114 (266)
T 2iwa_A 44 SSVRQVALQTGKVE-----NIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGF-IYDRRTLSNIKNFTHQ-MKD--GWGLAT 114 (266)
T ss_dssp CEEEEEETTTCCEE-----EEEECCTTCCEEEEEEETTEEEEEETTCSEEE-EEETTTTEEEEEEECC-SSS--CCEEEE
T ss_pred CEEEEEECCCCCEE-----EEEecCCCcceEEEEEeCCEEEEEEecCCEEE-EEECCCCcEEEEEECC-CCC--eEEEEE
Confidence 34555666666665 221 12223334455554 23 3334467777 9999999999888644 111 134555
Q ss_pred CCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCE
Q 006825 391 TGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRY 470 (630)
Q Consensus 391 dG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~ 470 (630)
||+++. ....+++|.++|..+.+......+..-...-..++.+.|. +|++
T Consensus 115 Dg~~l~-----------------------------vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~l 164 (266)
T 2iwa_A 115 DGKILY-----------------------------GSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEV 164 (266)
T ss_dssp CSSSEE-----------------------------EECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred CCCEEE-----------------------------EECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEE
Confidence 665443 2234678999998776532211111100112246788888 7876
Q ss_pred EEEEeCCCcEEEEECcCCceeeeeecccc------cC--cccceEEEEECCCCCE-EEEeeCCCee
Q 006825 471 LASAGEDCVIHVWQVVESERKGELLEKQE------DG--HLNMLLLANGSPEPTS-LSPKHLDNHL 527 (630)
Q Consensus 471 LASgS~DgtIrVWDl~tg~~~~~l~~~~~------~g--h~~~V~svafSpdg~~-lasgs~Dg~I 527 (630)
.+....++.|.+-|..+++.+..+..... .. .......++|+|+++. ++++.....+
T Consensus 165 yvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v 230 (266)
T 2iwa_A 165 WANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKL 230 (266)
T ss_dssp EEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEE
T ss_pred EEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeE
Confidence 66666788999999999998887642211 01 1135679999999765 4455455555
No 250
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.33 E-value=0.042 Score=61.61 Aligned_cols=137 Identities=9% Similarity=-0.027 Sum_probs=79.0
Q ss_pred ccCCC---EEEEEeCCCcEEEEECcCCceeeeeeccccc--------Ccccce--------------------------E
Q 006825 465 SLDGR---YLASAGEDCVIHVWQVVESERKGELLEKQED--------GHLNML--------------------------L 507 (630)
Q Consensus 465 SpDG~---~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~--------gh~~~V--------------------------~ 507 (630)
..+|+ +|+.++.+|.+.++|..+|+.+......... ....++ .
T Consensus 310 ~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~ 389 (571)
T 2ad6_A 310 PVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQG 389 (571)
T ss_dssp EETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSC
T ss_pred ccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCC
Confidence 35784 6788999999999999999877654211000 000011 2
Q ss_pred EEEECCCCCEEEEeeCCCeeeeecccccccccc----------c-------ccCccccccEEEeC-CCCceEEeccCCCC
Q 006825 508 LANGSPEPTSLSPKHLDNHLEKKRRGRSINRKS----------L-------SLDHMVVPETVFAL-SDKPICSFQGHLDD 569 (630)
Q Consensus 508 svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s----------~-------s~d~~i~~~~Vwdl-sgk~l~tL~GHs~~ 569 (630)
.++++|+..++.....+....++.......... . .....+ ..|++ +|+.+-++... ..
T Consensus 390 ~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l---~a~D~~tG~~~W~~~~~-~~ 465 (571)
T 2ad6_A 390 VDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQI---RAFDLTTGKAKWTKWEK-FA 465 (571)
T ss_dssp BCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEE---EEECTTTCCEEEEEEES-SC
T ss_pred CceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeE---EEEECCCCCEEEEecCC-CC
Confidence 356778877777665543332221111000000 0 011222 55666 67777666432 22
Q ss_pred EEEEEEc-CCCeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825 570 VLDLSWS-KSQHLLSSSMDKTVRLWHLSSKTCLKIFS 605 (630)
Q Consensus 570 V~sLafS-Pd~~LaSgS~DgtVrIWDl~tg~~l~t~~ 605 (630)
+....+. .+++++.++.|+.|+.||..+|+++..+.
T Consensus 466 ~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~ 502 (571)
T 2ad6_A 466 AWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK 502 (571)
T ss_dssp CCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEe
Confidence 2222222 23778889999999999999999999997
No 251
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.31 E-value=0.013 Score=67.80 Aligned_cols=212 Identities=7% Similarity=-0.030 Sum_probs=111.4
Q ss_pred ceEeeecceeeecCcc-ceeEEEee-c---ceE-----eecCCCccEecccCCCC-ceeEE-ecCCccCCEEEEEEcCCC
Q 006825 325 RQLTIEEFEMCVGHSP-IVQELMRR-Q---NVE-----EGNKDSFDLNNNGSSGG-GMKSK-KKGSWFKSIRTVASSVTG 392 (630)
Q Consensus 325 ~~lt~eef~~l~GHs~-~V~~Lafs-~---~la-----SgS~D~tvr~vWD~~tG-~~~~~-lk~gH~~~V~sVAfSpdG 392 (630)
+++.+..-..-.+|.- .+....|+ | .|| .|+...+++ ++|+.+| +.+.. +. + ....++|+|||
T Consensus 158 ~~vlld~n~~a~~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~-v~dl~~g~~~l~~~~~-~---~~~~~~WspDg 232 (751)
T 2xe4_A 158 EEVIIDVNQVAEGKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIE-FKRISDPSQTIADKVS-G---TNGEIVWGPDH 232 (751)
T ss_dssp CEEEEEHHHHTTTCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEE-EEETTCTTCCCCCCEE-E---ECSCCEECSST
T ss_pred CEEEechhHhccCCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEE-EEECCCCCEeCCcccc-C---ceeeEEEecCC
Confidence 3444443222345554 67788899 7 333 233334688 9999999 63221 11 1 12368999999
Q ss_pred CeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEec-ccCcCEEEEEEccCCCEE
Q 006825 393 HKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQ-AHNGSIWSIKFSLDGRYL 471 (630)
Q Consensus 393 ~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~-gHt~~V~sVaFSpDG~~L 471 (630)
+.|+-...+. . ....+|+++++.+++... ...+. .+......+.|+|||++|
T Consensus 233 ~~l~y~~~d~-----------------~-------~~~~~v~~~~lgt~~~~~---~lv~~~~~~~~~~~~~~SpDg~~l 285 (751)
T 2xe4_A 233 TSLFYVTKDE-----------------T-------LRENKVWRHVMGKLQSED---VCLYEEHNPLFSAFMYKAADTNTL 285 (751)
T ss_dssp TEEEEEEECT-----------------T-------CCEEEEEEEETTSCGGGC---EEEEECCCTTCEEEEEECTTSSEE
T ss_pred CEEEEEEECC-----------------C-------CCCCEEEEEECCCCchhc---EEEEecCCCceEEEEEECCCCCEE
Confidence 8876543321 0 111368888886653211 11122 233456789999999988
Q ss_pred EEEeC---CCcEEEEECcCCc-ee--eeeecccccCcccceEEEEECCCCCEEEEeeCC--Ceeeeeccccccccccccc
Q 006825 472 ASAGE---DCVIHVWQVVESE-RK--GELLEKQEDGHLNMLLLANGSPEPTSLSPKHLD--NHLEKKRRGRSINRKSLSL 543 (630)
Q Consensus 472 ASgS~---DgtIrVWDl~tg~-~~--~~l~~~~~~gh~~~V~svafSpdg~~lasgs~D--g~I~i~~~~~~~~~~s~s~ 543 (630)
+..+. ...|.++|+.++. .. ..+ ..+.....+.+.|+..+.+++....+ +..++
T Consensus 286 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~l----~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L-------------- 347 (751)
T 2xe4_A 286 CIGSQSPETAEVHLLDLRKGNAHNTLEIV----RPREKGVRYDVQMHGTSHLVILTNEGGAVNHKL-------------- 347 (751)
T ss_dssp EEEEECSSCEEEEEEESSSCTTCCCEEES----SCCCTTCCEEEEEETTTEEEEEECTTTCTTCEE--------------
T ss_pred EEEecCCCCceEEEEECCCCCCCceeEEe----ecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEE--------------
Confidence 87653 3458888987753 12 222 13334455556554444444443332 22211
Q ss_pred CccccccEEEeCCC-CceEE-eccCCC--CEEEEEEcCCCeEEEEECCCcEEEE
Q 006825 544 DHMVVPETVFALSD-KPICS-FQGHLD--DVLDLSWSKSQHLLSSSMDKTVRLW 593 (630)
Q Consensus 544 d~~i~~~~Vwdlsg-k~l~t-L~GHs~--~V~sLafSPd~~LaSgS~DgtVrIW 593 (630)
.++++.. ..... +..|.. .+..+.+..+.++++...|+..+||
T Consensus 348 -------~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~ 394 (751)
T 2xe4_A 348 -------LIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIW 394 (751)
T ss_dssp -------EEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEETTEEEEE
T ss_pred -------EEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEE
Confidence 2223321 22222 333443 3455666544666777788865554
No 252
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.16 E-value=0.015 Score=67.25 Aligned_cols=166 Identities=10% Similarity=0.000 Sum_probs=95.1
Q ss_pred CccC-CEEEEEEc-CCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCC-cccceeeeeEecc
Q 006825 378 SWFK-SIRTVASS-VTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCK-DLTALYKCQEIQA 454 (630)
Q Consensus 378 gH~~-~V~sVAfS-pdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~-el~~~~~v~tL~g 454 (630)
+|.- .+...+|| |||++++-+.+. .|....+|+++|+.++ +... ..+..
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~------------------------~G~~~~~l~v~dl~~g~~~l~----~~~~~ 221 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDM------------------------SGNEVYTIEFKRISDPSQTIA----DKVSG 221 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEES------------------------SSSSCEEEEEEETTCTTCCCC----CCEEE
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeC------------------------CCCceEEEEEEECCCCCEeCC----ccccC
Confidence 3443 67789999 999988743211 1233457999999887 5311 11211
Q ss_pred cCcCEEEEEEccCCCEEEEEeCC-----CcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCC-eee
Q 006825 455 HNGSIWSIKFSLDGRYLASAGED-----CVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN-HLE 528 (630)
Q Consensus 455 Ht~~V~sVaFSpDG~~LASgS~D-----gtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg-~I~ 528 (630)
....++|+|||+.|+-...| ..|.+|++.++.....++.. .........+.|+|||++|+.....+ .-.
T Consensus 222 ---~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~--~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~ 296 (751)
T 2xe4_A 222 ---TNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYE--EHNPLFSAFMYKAADTNTLCIGSQSPETAE 296 (751)
T ss_dssp ---ECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEE--CCCTTCEEEEEECTTSSEEEEEEECSSCEE
T ss_pred ---ceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEe--cCCCceEEEEEECCCCCEEEEEecCCCCce
Confidence 13468899999988877765 35888888776532222100 12223456789999999888765332 110
Q ss_pred eecccccccccccccCccccccEEEeCCC---Cc-eEEe-ccCCCCEEEEEEcCCC-eEEEEECC----CcEEEEeCCC
Q 006825 529 KKRRGRSINRKSLSLDHMVVPETVFALSD---KP-ICSF-QGHLDDVLDLSWSKSQ-HLLSSSMD----KTVRLWHLSS 597 (630)
Q Consensus 529 i~~~~~~~~~~s~s~d~~i~~~~Vwdlsg---k~-l~tL-~GHs~~V~sLafSPd~-~LaSgS~D----gtVrIWDl~t 597 (630)
+ .++++.+ +. +..+ .+.......+.|+..+ +++....+ ..|.++++.+
T Consensus 297 l---------------------~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 297 V---------------------HLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp E---------------------EEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTS
T ss_pred E---------------------EEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCC
Confidence 0 3445522 22 1333 3344556777776664 44444443 3566667664
No 253
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.01 E-value=0.34 Score=50.41 Aligned_cols=148 Identities=7% Similarity=-0.092 Sum_probs=86.0
Q ss_pred EEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCC-EEEEEeCC-CcEEEEECcCCceeeeeecccccCc
Q 006825 425 FHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGR-YLASAGED-CVIHVWQVVESERKGELLEKQEDGH 502 (630)
Q Consensus 425 ~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~-~LASgS~D-gtIrVWDl~tg~~~~~l~~~~~~gh 502 (630)
++-.....|.+.+...... ...+.........|++.|.+. ++++-... +.|...++... ....+. ...
T Consensus 132 ~~d~~~~~I~~~~~dG~~~-----~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~----~~~ 201 (349)
T 3v64_C 132 WTDSGTSRIEVANLDGAHR-----KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-GRRIIA----DTH 201 (349)
T ss_dssp EEETTTTEEEEEETTSCSC-----EEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEESC----CSS
T ss_pred EEcCCCCeEEEEcCCCCce-----EEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC-CcEEEE----ECC
Confidence 4444556788887764421 112233445678999999555 44554444 77888887533 222321 222
Q ss_pred ccceEEEEECCCCCEEE-EeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEe-ccCCCCEEEEEEcCCCe
Q 006825 503 LNMLLLANGSPEPTSLS-PKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSF-QGHLDDVLDLSWSKSQH 580 (630)
Q Consensus 503 ~~~V~svafSpdg~~la-sgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL-~GHs~~V~sLafSPd~~ 580 (630)
......++++|++..|. +-...+.| ..+++.|....++ .........|++..+.+
T Consensus 202 ~~~PnGla~d~~~~~lY~aD~~~~~I-----------------------~~~~~dG~~~~~~~~~~~~~P~giav~~~~l 258 (349)
T 3v64_C 202 LFWPNGLTIDYAGRRMYWVDAKHHVI-----------------------ERANLDGSHRKAVISQGLPHPFAITVFEDSL 258 (349)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEE-----------------------EEEETTSCSCEEEECSSCSSEEEEEEETTEE
T ss_pred CCCcceEEEeCCCCEEEEEECCCCEE-----------------------EEEeCCCCceEEEEeCCCCCceEEEEECCEE
Confidence 34567899998655444 44444555 4555555443333 22334567777744466
Q ss_pred EEEEECCCcEEEEeCCCCcEEEEEe
Q 006825 581 LLSSSMDKTVRLWHLSSKTCLKIFS 605 (630)
Q Consensus 581 LaSgS~DgtVrIWDl~tg~~l~t~~ 605 (630)
+++-...+.|...+..+|+.+.++.
T Consensus 259 y~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 259 YWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp EEEETTTTEEEEEETTTCCSCEEEE
T ss_pred EEecCCCCeEEEEEccCCCccEEec
Confidence 6677778888888877776665554
No 254
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.00 E-value=0.25 Score=55.47 Aligned_cols=54 Identities=15% Similarity=0.147 Sum_probs=37.7
Q ss_pred EEEeC-CCCceEEeccCCCCEEEEEE-cCCCeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825 551 TVFAL-SDKPICSFQGHLDDVLDLSW-SKSQHLLSSSMDKTVRLWHLSSKTCLKIFS 605 (630)
Q Consensus 551 ~Vwdl-sgk~l~tL~GHs~~V~sLaf-SPd~~LaSgS~DgtVrIWDl~tg~~l~t~~ 605 (630)
..|++ +|+.+-++..+. .+..-.. ...++++.|+.|+.++.||.++|+.+..+.
T Consensus 469 ~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~ 524 (582)
T 1flg_A 469 RAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQ 524 (582)
T ss_dssp EEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEec
Confidence 55676 677776654332 2221111 124788889999999999999999999997
No 255
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=96.96 E-value=0.012 Score=66.34 Aligned_cols=161 Identities=11% Similarity=-0.060 Sum_probs=92.6
Q ss_pred CCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCcc---c--cCCcceEEEee------cCCCe--
Q 006825 357 DSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSS---E--KGGRRSSSATD------DSQDV-- 423 (630)
Q Consensus 357 D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s---~--~gh~~~Vsa~~------~s~d~-- 423 (630)
++++- +.|.++.+...++..+- .-..++++|+|+++...+.+.+... . ..-...|.... +.+++
T Consensus 174 ~~~vt-vID~~t~~v~~qI~Vgg--~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~ 250 (595)
T 1fwx_A 174 VNVFT-AVDADKWEVAWQVLVSG--NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDY 250 (595)
T ss_dssp EEEEE-EEETTTTEEEEEEEESS--CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCS
T ss_pred CceEE-EEECCCCeEEEEEEeCC--CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCe
Confidence 34555 88999988777766322 2345789999999888775542211 0 00001111100 00111
Q ss_pred EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEe-CCCcEEEEECcCCce------------
Q 006825 424 SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG-EDCVIHVWQVVESER------------ 490 (630)
Q Consensus 424 l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS-~DgtIrVWDl~tg~~------------ 490 (630)
..- +.|.+.|..+.+... .+..+.-- ....++.|+|||++++.++ .+.+|.++|+.+.+.
T Consensus 251 ~~i----~~V~VID~~~~~~~~--~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v 323 (595)
T 1fwx_A 251 QEL----NGVKVVDGRKEASSL--FTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAV 323 (595)
T ss_dssp EEE----TTEEEEECSGGGCCS--SEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGE
T ss_pred eEE----CcEEEEeCcccCCce--eEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccce
Confidence 121 348888887621111 02223211 2345799999999766654 778999999986531
Q ss_pred eeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccc
Q 006825 491 KGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRG 533 (630)
Q Consensus 491 ~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~ 533 (630)
..++ .-......++|+|+|..+++...+..|.+|+..
T Consensus 324 ~~~v------~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~ 360 (595)
T 1fwx_A 324 VAEP------ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIE 360 (595)
T ss_dssp EECC------BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred EEEc------CCCCCcceEEECCCCeEEEEEecCCcEEEEEhh
Confidence 1121 112346789999999666677788888555543
No 256
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=96.93 E-value=0.32 Score=51.37 Aligned_cols=148 Identities=7% Similarity=-0.097 Sum_probs=86.5
Q ss_pred EEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEE-eCC-CcEEEEECcCCceeeeeecccccCc
Q 006825 425 FHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASA-GED-CVIHVWQVVESERKGELLEKQEDGH 502 (630)
Q Consensus 425 ~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASg-S~D-gtIrVWDl~tg~~~~~l~~~~~~gh 502 (630)
++-.....|.+.+...... ...+.........|++.|.+.+|+.. ... +.|...++... ....+. ...
T Consensus 175 ~~d~~~~~I~~~~~dg~~~-----~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~----~~~ 244 (386)
T 3v65_B 175 WTDSGTSRIEVANLDGAHR-----KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-GRRIIA----DTH 244 (386)
T ss_dssp EEETTTTEEEECBTTSCSC-----EEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEEEE----CSS
T ss_pred EEcCCCCeEEEEeCCCCce-----EEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC-CcEEEE----ECC
Confidence 4444456777777654321 11223334567899999866554444 344 67877777533 222321 222
Q ss_pred ccceEEEEECCCCCEE-EEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEe-ccCCCCEEEEEEcCCCe
Q 006825 503 LNMLLLANGSPEPTSL-SPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSF-QGHLDDVLDLSWSKSQH 580 (630)
Q Consensus 503 ~~~V~svafSpdg~~l-asgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL-~GHs~~V~sLafSPd~~ 580 (630)
......|+++|++..| ++-...+.| ..+++.|....++ .........|++..+.+
T Consensus 245 ~~~PnGlavd~~~~~lY~aD~~~~~I-----------------------~~~d~dG~~~~~~~~~~~~~P~giav~~~~l 301 (386)
T 3v65_B 245 LFWPNGLTIDYAGRRMYWVDAKHHVI-----------------------ERANLDGSHRKAVISQGLPHPFAITVFEDSL 301 (386)
T ss_dssp CSCEEEEEEEGGGTEEEEEETTTTEE-----------------------EEECTTSCSCEEEECSSCSSEEEEEEETTEE
T ss_pred CCCeeeEEEeCCCCEEEEEECCCCEE-----------------------EEEeCCCCeeEEEEECCCCCceEEEEECCEE
Confidence 3456789999765544 444444555 4555555443333 22334567788854466
Q ss_pred EEEEECCCcEEEEeCCCCcEEEEEe
Q 006825 581 LLSSSMDKTVRLWHLSSKTCLKIFS 605 (630)
Q Consensus 581 LaSgS~DgtVrIWDl~tg~~l~t~~ 605 (630)
+++-...+.|..++..+|+.+.++.
T Consensus 302 y~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 302 YWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp EEEETTTTEEEEEETTTCCSCEEEE
T ss_pred EEeeCCCCeEEEEECCCCcceEEEc
Confidence 7777788899999977777666665
No 257
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=96.92 E-value=0.063 Score=54.48 Aligned_cols=169 Identities=8% Similarity=-0.019 Sum_probs=98.3
Q ss_pred ceeEEEEcCCCceEeeecceeeecCccceeEEEeec-ceEeec-CCCccEecccCCCCceeEEecCCccCCEEEEEEcCC
Q 006825 314 TWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ-NVEEGN-KDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVT 391 (630)
Q Consensus 314 ~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~-~laSgS-~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpd 391 (630)
...+..|+.||+.+.--. .+.......|++.. .|.... .++++. ++|.++++.+.++..+- ...++.+|
T Consensus 65 S~v~~vD~~Tgkv~~~~~----l~~~~FgeGit~~g~~ly~ltw~~~~v~-v~D~~t~~~~~ti~~~~----eG~glt~d 135 (262)
T 3nol_A 65 SSIRKVDIESGKTLQQIE----LGKRYFGEGISDWKDKIVGLTWKNGLGF-VWNIRNLRQVRSFNYDG----EGWGLTHN 135 (262)
T ss_dssp EEEEEECTTTCCEEEEEE----CCTTCCEEEEEEETTEEEEEESSSSEEE-EEETTTCCEEEEEECSS----CCCCEEEC
T ss_pred ceEEEEECCCCcEEEEEe----cCCccceeEEEEeCCEEEEEEeeCCEEE-EEECccCcEEEEEECCC----CceEEecC
Confidence 345666778888772111 12222333455544 222223 356777 99999999998887321 11233344
Q ss_pred CCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccC-cCEEEEEEccCCCE
Q 006825 392 GHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHN-GSIWSIKFSLDGRY 470 (630)
Q Consensus 392 G~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt-~~V~sVaFSpDG~~ 470 (630)
|+.| +......+|+++|..+.+......+. ..++. ..++.+.|. +|++
T Consensus 136 g~~L-----------------------------~~SdGs~~i~~iDp~T~~v~~~I~V~-~~g~~~~~lNELe~~-~G~l 184 (262)
T 3nol_A 136 DQYL-----------------------------IMSDGTPVLRFLDPESLTPVRTITVT-AHGEELPELNELEWV-DGEI 184 (262)
T ss_dssp SSCE-----------------------------EECCSSSEEEEECTTTCSEEEEEECE-ETTEECCCEEEEEEE-TTEE
T ss_pred CCEE-----------------------------EEECCCCeEEEEcCCCCeEEEEEEec-cCCccccccceeEEE-CCEE
Confidence 4433 33334667999998776532211111 11222 345567776 7877
Q ss_pred EEEEeCCCcEEEEECcCCceeeeeeccccc-------CcccceEEEEECCCCCEEEEee
Q 006825 471 LASAGEDCVIHVWQVVESERKGELLEKQED-------GHLNMLLLANGSPEPTSLSPKH 522 (630)
Q Consensus 471 LASgS~DgtIrVWDl~tg~~~~~l~~~~~~-------gh~~~V~svafSpdg~~lasgs 522 (630)
.|..-.+..|.+-|..+++.+..+....+. .-......||++|++..|...+
T Consensus 185 yan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 185 FANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred EEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 776667889999999999988876432111 1123567999999866555543
No 258
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=96.88 E-value=0.35 Score=49.78 Aligned_cols=148 Identities=9% Similarity=-0.057 Sum_probs=87.3
Q ss_pred EEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEe--CCCcEEEEECcCCceeeeeecccccCc
Q 006825 425 FHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG--EDCVIHVWQVVESERKGELLEKQEDGH 502 (630)
Q Consensus 425 ~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS--~DgtIrVWDl~tg~~~~~l~~~~~~gh 502 (630)
++-.....|.+++...... ...+......-..|++.|.+.+|+-+. ..+.|...++. |.....+. ...
T Consensus 95 ~~d~~~~~I~~~~~dG~~~-----~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~~~----~~~ 164 (318)
T 3sov_A 95 WTDSETNRIEVSNLDGSLR-----KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIII----NSE 164 (318)
T ss_dssp EEETTTTEEEEEETTSCSC-----EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT-SCSCEEEE----CSS
T ss_pred EEECCCCEEEEEECCCCcE-----EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC-CCCeEEEE----ECC
Confidence 4444566788888765421 111223445678999998655555444 35677777775 33333321 122
Q ss_pred ccceEEEEECCCCCEEEE-eeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEec-cCCCCEEEEEEcCCCe
Q 006825 503 LNMLLLANGSPEPTSLSP-KHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ-GHLDDVLDLSWSKSQH 580 (630)
Q Consensus 503 ~~~V~svafSpdg~~las-gs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~-GHs~~V~sLafSPd~~ 580 (630)
......++++|++..|.. -...+.| ..+++.|....++. +.......|++..+.+
T Consensus 165 l~~Pnglavd~~~~~lY~aD~~~~~I-----------------------~~~d~dG~~~~~~~~~~~~~P~glav~~~~l 221 (318)
T 3sov_A 165 IYWPNGLTLDYEEQKLYWADAKLNFI-----------------------HKSNLDGTNRQAVVKGSLPHPFALTLFEDIL 221 (318)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEE-----------------------EEEETTSCSCEEEECSCCSCEEEEEEETTEE
T ss_pred CCCccEEEEeccCCEEEEEECCCCEE-----------------------EEEcCCCCceEEEecCCCCCceEEEEeCCEE
Confidence 345678999986555444 4444555 45555554444332 2334556777765566
Q ss_pred EEEEECCCcEEEEeCCCCcEEEEEe
Q 006825 581 LLSSSMDKTVRLWHLSSKTCLKIFS 605 (630)
Q Consensus 581 LaSgS~DgtVrIWDl~tg~~l~t~~ 605 (630)
+.+-...+.|..++..+|+.+..+.
T Consensus 222 ywtd~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 222 YWTDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp EEEETTTTEEEEEETTTCCSCEEEE
T ss_pred EEEecCCCeEEEEECCCCCceEEEe
Confidence 6777778889999988777655554
No 259
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=96.84 E-value=0.13 Score=52.19 Aligned_cols=189 Identities=9% Similarity=0.033 Sum_probs=93.2
Q ss_pred EEEecCCcEEEEEeCCCCcccceeeee--------------EecccCcCEEEEEEcc-CCCEEEEEeCCCcEEEEECcCC
Q 006825 424 SFHGQERVRVRQYGKSCKDLTALYKCQ--------------EIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVES 488 (630)
Q Consensus 424 l~Sgs~Dg~VriWd~~~~el~~~~~v~--------------tL~gHt~~V~sVaFSp-DG~~LASgS~DgtIrVWDl~tg 488 (630)
++++..++.|..|+..++.+..+.... ........+..|++.+ +|++++ +...+.|.++|..++
T Consensus 33 l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v-~d~~~~i~~~d~~~g 111 (322)
T 2fp8_A 33 FYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYI-VDCYYHLSVVGSEGG 111 (322)
T ss_dssp EEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEE-EETTTEEEEECTTCE
T ss_pred EEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEE-EECCCCEEEEeCCCC
Confidence 456666778888887655432110000 0001123578999998 676555 444455888887654
Q ss_pred ceeeeeecccccC-cccceEEEEECC-CCCEEEEeeCCCeeeeeccccc-ccccccccCccccccEEEeCCCCceEEecc
Q 006825 489 ERKGELLEKQEDG-HLNMLLLANGSP-EPTSLSPKHLDNHLEKKRRGRS-INRKSLSLDHMVVPETVFALSDKPICSFQG 565 (630)
Q Consensus 489 ~~~~~l~~~~~~g-h~~~V~svafSp-dg~~lasgs~Dg~I~i~~~~~~-~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~G 565 (630)
.. ..+... ..+ .......+++.+ +|.++++..... . ..... ...........+ ..++..+..+..+..
T Consensus 112 ~~-~~~~~~-~~~~~~~~p~~i~~d~~~G~l~v~d~~~~-~---~~~~~~~~~~~~~~~g~v---~~~d~~~~~~~~~~~ 182 (322)
T 2fp8_A 112 HA-TQLATS-VDGVPFKWLYAVTVDQRTGIVYFTDVSTL-Y---DDRGVQQIMDTSDKTGRL---IKYDPSTKETTLLLK 182 (322)
T ss_dssp EC-EEEESE-ETTEECSCEEEEEECTTTCCEEEEESCSS-C---CTTCHHHHHHHTCCCEEE---EEEETTTTEEEEEEE
T ss_pred EE-EEeccc-CCCCcccccceEEEecCCCEEEEECCccc-c---cccccceehcccCCCceE---EEEeCCCCEEEEecc
Confidence 32 222111 111 123467899999 898777653211 0 00000 000000001111 344443233333222
Q ss_pred CCCCEEEEEEcCC-CeE-EEEECCCcEEEEeCCCCc--EEEEEe-cCCceEEEE-cCCCcEEEE
Q 006825 566 HLDDVLDLSWSKS-QHL-LSSSMDKTVRLWHLSSKT--CLKIFS-HSDYDISLV-DRLMLRFAY 623 (630)
Q Consensus 566 Hs~~V~sLafSPd-~~L-aSgS~DgtVrIWDl~tg~--~l~t~~-H~~~V~sVa-s~~~~~lAs 623 (630)
.-.....|+|+|+ ++| ++-...+.|.+|++.... ....+. ..+ ...|+ ++.+.++++
T Consensus 183 ~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va 245 (322)
T 2fp8_A 183 ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVS 245 (322)
T ss_dssp EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEE
T ss_pred CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEE
Confidence 2233467999999 644 455667899999987521 122232 222 56677 555544433
No 260
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=96.77 E-value=0.046 Score=55.63 Aligned_cols=171 Identities=8% Similarity=-0.092 Sum_probs=100.3
Q ss_pred cCCCceeEEEEcCCCceEeeecceeeecCccceeEEEeec-ceE-eecCCCccEecccCCCCceeEEecCCccCCEEEEE
Q 006825 310 QEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ-NVE-EGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVA 387 (630)
Q Consensus 310 ~~dg~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~-~la-SgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVA 387 (630)
+.+|. .+..|+.||+.+ .++.+...+...+++.. .|. ..-.++.+. ++|.++++.+.++..+-. ..+
T Consensus 72 G~~g~-v~~iD~~Tgkv~-----~~~l~~~~FgeGit~~g~~Ly~ltw~~~~v~-V~D~~Tl~~~~ti~~~~e----GwG 140 (268)
T 3nok_A 72 GHQGT-LRQLSLESAQPV-----WMERLGNIFAEGLASDGERLYQLTWTEGLLF-TWSGMPPQRERTTRYSGE----GWG 140 (268)
T ss_dssp TTTTE-EEECCSSCSSCS-----EEEECTTCCEEEEEECSSCEEEEESSSCEEE-EEETTTTEEEEEEECSSC----CCC
T ss_pred CCCCE-EEEEECCCCcEE-----eEECCCCcceeEEEEeCCEEEEEEccCCEEE-EEECCcCcEEEEEeCCCc----eeE
Confidence 33454 556677888887 32233333334455554 222 233456677 999999999988873211 122
Q ss_pred EcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccC
Q 006825 388 SSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLD 467 (630)
Q Consensus 388 fSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpD 467 (630)
+.+||+.| +....+.+|+++|..+.+......+..-...-..++.|.|. +
T Consensus 141 Lt~Dg~~L-----------------------------~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-d 190 (268)
T 3nok_A 141 LCYWNGKL-----------------------------VRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-N 190 (268)
T ss_dssp EEEETTEE-----------------------------EEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-T
T ss_pred EecCCCEE-----------------------------EEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-C
Confidence 22444433 33345778999998776542211111100111245677776 8
Q ss_pred CCEEEEEeCCCcEEEEECcCCceeeeeecccc--------cCcccceEEEEECCCC-CEEEEe
Q 006825 468 GRYLASAGEDCVIHVWQVVESERKGELLEKQE--------DGHLNMLLLANGSPEP-TSLSPK 521 (630)
Q Consensus 468 G~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~--------~gh~~~V~svafSpdg-~~lasg 521 (630)
|++.|..-.+..|.+-|..+++.+..+....+ ..-......||+.|++ +++++|
T Consensus 191 G~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 191 GVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp TEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 87777666788999999999998877652211 1122456799999974 555555
No 261
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=96.75 E-value=0.21 Score=56.47 Aligned_cols=167 Identities=6% Similarity=-0.074 Sum_probs=90.5
Q ss_pred cEEEEEeCCCCcccceeeeeEecccC--------cCEEEEEEc-cCC---CEEEEEeCCCcEEEEECcCCceeeeeeccc
Q 006825 431 VRVRQYGKSCKDLTALYKCQEIQAHN--------GSIWSIKFS-LDG---RYLASAGEDCVIHVWQVVESERKGELLEKQ 498 (630)
Q Consensus 431 g~VriWd~~~~el~~~~~v~tL~gHt--------~~V~sVaFS-pDG---~~LASgS~DgtIrVWDl~tg~~~~~l~~~~ 498 (630)
..|..+|..+++..= ...+..|. .++. +... .+| +.|+.++.+|.+.+.|..+|+.+.......
T Consensus 278 ~sv~Ald~~TG~~~W---~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~ 353 (599)
T 1w6s_A 278 MTIFGRDADTGEAKF---GYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDD 353 (599)
T ss_dssp SEEEEEETTTCCEEE---EEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESST
T ss_pred ceEEEEeCCCCceee---EeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccC
Confidence 367778877775421 11222232 2232 2332 578 578889999999999999998876542110
Q ss_pred c-------c-Ccccc--------------------------eEEEEECCCCCEEEEeeCCCeeeeecccc----cccc--
Q 006825 499 E-------D-GHLNM--------------------------LLLANGSPEPTSLSPKHLDNHLEKKRRGR----SINR-- 538 (630)
Q Consensus 499 ~-------~-gh~~~--------------------------V~svafSpdg~~lasgs~Dg~I~i~~~~~----~~~~-- 538 (630)
. . ....+ -..++++|+..++.....+....++.... ....
T Consensus 354 ~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g 433 (599)
T 1w6s_A 354 TVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVG 433 (599)
T ss_dssp TCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCC
T ss_pred CcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceec
Confidence 0 0 00000 12467788877777665443222111110 0000
Q ss_pred ----ccc---c------cCccccccEEEeC-CCCceEEeccCCCCEEEEEEc-CCCeEEEEECCCcEEEEeCCCCcEEEE
Q 006825 539 ----KSL---S------LDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWS-KSQHLLSSSMDKTVRLWHLSSKTCLKI 603 (630)
Q Consensus 539 ----~s~---s------~d~~i~~~~Vwdl-sgk~l~tL~GHs~~V~sLafS-Pd~~LaSgS~DgtVrIWDl~tg~~l~t 603 (630)
... . ....+ ..|++ +|+.+-+..-. ..+..-.+. ..+++..++.|+.|+.||.++|+.+..
T Consensus 434 ~~~~~~~~p~~~~~~~~~~G~l---~A~D~~tG~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~ 509 (599)
T 1w6s_A 434 ATLNMYPGPKGDRQNYEGLGQI---KAYNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWK 509 (599)
T ss_dssp EEEEEEECTTSBTTTTBCCEEE---EEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred ccceeccCCcCCcccCCCcCeE---EEEECCCCCEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEE
Confidence 000 0 11222 55666 67776665311 112111111 237777899999999999999999998
Q ss_pred Ee
Q 006825 604 FS 605 (630)
Q Consensus 604 ~~ 605 (630)
+.
T Consensus 510 ~~ 511 (599)
T 1w6s_A 510 FK 511 (599)
T ss_dssp EE
T ss_pred ee
Confidence 87
No 262
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=96.73 E-value=0.29 Score=49.06 Aligned_cols=166 Identities=10% Similarity=-0.008 Sum_probs=96.5
Q ss_pred ceeEEEEcCCCceEeeecceeeecCccceeEEEeec-c-eEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCC
Q 006825 314 TWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ-N-VEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVT 391 (630)
Q Consensus 314 ~~~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~-~-laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpd 391 (630)
...+..|+.||+.+.... .+....-..+++.. . .+..-.++.+. ++|.+|.+.+.++..+-. ..++.++
T Consensus 43 S~v~~vD~~tgkv~~~~~----l~~~~fgeGi~~~~~~ly~ltw~~~~v~-v~D~~tl~~~~ti~~~~~----Gwglt~d 113 (243)
T 3mbr_X 43 SSVRKVDLETGRILQRAE----VPPPYFGAGIVAWRDRLIQLTWRNHEGF-VYDLATLTPRARFRYPGE----GWALTSD 113 (243)
T ss_dssp CEEEEEETTTCCEEEEEE----CCTTCCEEEEEEETTEEEEEESSSSEEE-EEETTTTEEEEEEECSSC----CCEEEEC
T ss_pred ceEEEEECCCCCEEEEEe----CCCCcceeEEEEeCCEEEEEEeeCCEEE-EEECCcCcEEEEEeCCCC----ceEEeeC
Confidence 456677888888872211 11122223344444 2 22233456777 999999999998874311 1233344
Q ss_pred CCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccC---cCEEEEEEccCC
Q 006825 392 GHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHN---GSIWSIKFSLDG 468 (630)
Q Consensus 392 G~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt---~~V~sVaFSpDG 468 (630)
|+.| +....+.+|+++|..+.+......+ ..+. ..++-|.+. +|
T Consensus 114 g~~L-----------------------------~vSdgs~~l~~iDp~t~~~~~~I~V---~~~g~~~~~lNeLe~~-~G 160 (243)
T 3mbr_X 114 DSHL-----------------------------YMSDGTAVIRKLDPDTLQQVGSIKV---TAGGRPLDNLNELEWV-NG 160 (243)
T ss_dssp SSCE-----------------------------EEECSSSEEEEECTTTCCEEEEEEC---EETTEECCCEEEEEEE-TT
T ss_pred CCEE-----------------------------EEECCCCeEEEEeCCCCeEEEEEEE---ccCCcccccceeeEEe-CC
Confidence 4433 3333467899999877653221111 1121 345566665 77
Q ss_pred CEEEEEeCCCcEEEEECcCCceeeeeeccccc--------CcccceEEEEECCCCCEEEEe
Q 006825 469 RYLASAGEDCVIHVWQVVESERKGELLEKQED--------GHLNMLLLANGSPEPTSLSPK 521 (630)
Q Consensus 469 ~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~--------gh~~~V~svafSpdg~~lasg 521 (630)
++.|..-.+..|.+-|..+++.+..+....+. ........|++.|++..|...
T Consensus 161 ~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVT 221 (243)
T 3mbr_X 161 ELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVT 221 (243)
T ss_dssp EEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEE
T ss_pred EEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEE
Confidence 77766667889999999999988876532221 122356799999985554443
No 263
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=96.70 E-value=1.3 Score=50.68 Aligned_cols=253 Identities=8% Similarity=-0.053 Sum_probs=145.0
Q ss_pred ccceeEEEeec--ceEeecCCCccEecccCCCCceeEEec-------------CCccCCEEEEEEcCCCCeEEeecCCC-
Q 006825 339 SPIVQELMRRQ--NVEEGNKDSFDLNNNGSSGGGMKSKKK-------------GSWFKSIRTVASSVTGHKERRSSDER- 402 (630)
Q Consensus 339 s~~V~~Lafs~--~laSgS~D~tvr~vWD~~tG~~~~~lk-------------~gH~~~V~sVAfSpdG~~lasgS~D~- 402 (630)
...|.+|+..+ .|.-|+..+.+. ++|..++....... .-....|.++....+|.+-+..-..+
T Consensus 257 ~~~i~~i~~d~~g~lWigt~~~Gl~-~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl 335 (781)
T 3v9f_A 257 SSYIFSIKQLKDNKLWIATELNGIM-ILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGI 335 (781)
T ss_dssp CCCEEEEEECTTSEEEEEESSSCEE-EEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCE
T ss_pred CceEEEEEECCCCCEEEEeCCCCeE-EECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeE
Confidence 35688888755 566666655666 78877665332111 12346799999999888544321222
Q ss_pred -----CCcc---c----------cCCcceEEEeecCCCe-EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEE
Q 006825 403 -----DTSS---E----------KGGRRSSSATDDSQDV-SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIK 463 (630)
Q Consensus 403 -----dt~s---~----------~gh~~~Vsa~~~s~d~-l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVa 463 (630)
.... . .-....|.++....++ ++.|..++-|..|+..++.+.... ..-......|++|.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~--~~~~~~~~~v~~i~ 413 (781)
T 3v9f_A 336 NFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNK--ENRELLSNSVLCSL 413 (781)
T ss_dssp EEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-------CCCSBEEEEE
T ss_pred EEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEcc--CCCCCCCcceEEEE
Confidence 1111 0 0023457777666655 888887777888887654332110 00122346799999
Q ss_pred EccCCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeeccccccccccccc
Q 006825 464 FSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSL 543 (630)
Q Consensus 464 FSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~ 543 (630)
..++|++.+ |..++-|.+++..+++...... . .-....|.++...+++.+.+.. ..| +
T Consensus 414 ~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~-~--~~~~~~v~~i~~d~~g~lwigt-~~G-l---------------- 471 (781)
T 3v9f_A 414 KDSEGNLWF-GTYLGNISYYNTRLKKFQIIEL-E--KNELLDVRVFYEDKNKKIWIGT-HAG-V---------------- 471 (781)
T ss_dssp ECTTSCEEE-EETTEEEEEECSSSCEEEECCS-T--TTCCCCEEEEEECTTSEEEEEE-TTE-E----------------
T ss_pred ECCCCCEEE-EeccCCEEEEcCCCCcEEEecc-C--CCCCCeEEEEEECCCCCEEEEE-CCc-e----------------
Confidence 998888655 6666778899987665332210 0 1134568888888888766654 344 4
Q ss_pred CccccccEEEeCCCCceEEec-c-----CCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEe-----cCCceEE
Q 006825 544 DHMVVPETVFALSDKPICSFQ-G-----HLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-----HSDYDIS 612 (630)
Q Consensus 544 d~~i~~~~Vwdlsgk~l~tL~-G-----Hs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~l~t~~-----H~~~V~s 612 (630)
..++.....+..+. . ....|.++...+++.|..|..++-|..||..+++.. .+. ....|.+
T Consensus 472 -------~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~-~~~~~~~l~~~~i~~ 543 (781)
T 3v9f_A 472 -------FVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVR-KFNQYEGFCSNTINQ 543 (781)
T ss_dssp -------EEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEEE-EECTTTTCSCSCEEE
T ss_pred -------EEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeEE-EccCCCCCCCCeeEE
Confidence 22333111111111 1 135789998888866666776555778998776543 343 2467888
Q ss_pred EE-cCCC-cEEEEe
Q 006825 613 LV-DRLM-LRFAYG 624 (630)
Q Consensus 613 Va-s~~~-~~lAsg 624 (630)
|. ++.+ +++++.
T Consensus 544 i~~d~~g~lWi~T~ 557 (781)
T 3v9f_A 544 IYRSSKGQMWLATG 557 (781)
T ss_dssp EEECTTSCEEEEET
T ss_pred EEECCCCCEEEEEC
Confidence 88 5444 455543
No 264
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=96.68 E-value=0.74 Score=47.77 Aligned_cols=157 Identities=8% Similarity=-0.015 Sum_probs=88.6
Q ss_pred EEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccC-CCEEEEEeCCCcEEEEECcCCceeeeeecccccCcc
Q 006825 425 FHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLD-GRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHL 503 (630)
Q Consensus 425 ~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpD-G~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~ 503 (630)
++-...++|+.++....... ..+.........|++.+. ++++++-...+.|.+.++.... ...+. ....
T Consensus 89 ~~D~~~~~I~r~~~~g~~~~-----~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~-~~~l~----~~~l 158 (349)
T 3v64_C 89 WSDVTLDRILRANLNGSNVE-----EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-RKVLL----WQSL 158 (349)
T ss_dssp EEETTTTEEEEEETTSCSCE-----EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEE----CTTC
T ss_pred EEeccCCceEEEecCCCCce-----EEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc-eEEEE----eCCC
Confidence 44445667888887665321 112222344578999874 5555666677889999986443 22321 2233
Q ss_pred cceEEEEECCCCCEEEEe-eCC-CeeeeecccccccccccccCccccccEEEeCCCCceEEecc-CCCCEEEEEEcCC-C
Q 006825 504 NMLLLANGSPEPTSLSPK-HLD-NHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQG-HLDDVLDLSWSKS-Q 579 (630)
Q Consensus 504 ~~V~svafSpdg~~lasg-s~D-g~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~G-Hs~~V~sLafSPd-~ 579 (630)
.....+++.|.+..|... ... ..| ..+++.|.....+.. .-..-+.|+|+|+ +
T Consensus 159 ~~P~~iavdp~~g~ly~td~~~~~~I-----------------------~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~ 215 (349)
T 3v64_C 159 EKPRAIALHPMEGTIYWTDWGNTPRI-----------------------EASSMDGSGRRIIADTHLFWPNGLTIDYAGR 215 (349)
T ss_dssp SCEEEEEEETTTTEEEEEECSSSCEE-----------------------EEEETTSCSCEESCCSSCSCEEEEEEETTTT
T ss_pred CCcceEEEecCcCeEEEeccCCCCEE-----------------------EEEeCCCCCcEEEEECCCCCcceEEEeCCCC
Confidence 456789999865544443 333 344 344455554444432 2334688999986 4
Q ss_pred e-EEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE
Q 006825 580 H-LLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV 614 (630)
Q Consensus 580 ~-LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa 614 (630)
. +++=+..+.|..+|+........+. .......|+
T Consensus 216 ~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gia 252 (349)
T 3v64_C 216 RMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAIT 252 (349)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEE
T ss_pred EEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEE
Confidence 4 4455567788888876433222222 333444454
No 265
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=96.64 E-value=1.4 Score=50.38 Aligned_cols=250 Identities=7% Similarity=-0.052 Sum_probs=146.9
Q ss_pred ccceeEEEeec--ceEeecCCCccEecccCCCCceeEEe--------cCCccCCEEEEEEcCCCCeEEeecCCC------
Q 006825 339 SPIVQELMRRQ--NVEEGNKDSFDLNNNGSSGGGMKSKK--------KGSWFKSIRTVASSVTGHKERRSSDER------ 402 (630)
Q Consensus 339 s~~V~~Lafs~--~laSgS~D~tvr~vWD~~tG~~~~~l--------k~gH~~~V~sVAfSpdG~~lasgS~D~------ 402 (630)
...|.+|+.-+ .|-.|+.++.+. .++..++...... ..-....|.+++...+|.+-+......
T Consensus 312 ~~~v~~i~~D~~g~lWigt~~~Gl~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~ 390 (781)
T 3v9f_A 312 NASARYIFQDSFNNIWIGTWGGGIN-FISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFEN 390 (781)
T ss_dssp SSCEEEEEECSSCCEEEEEBSSCEE-EECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEET
T ss_pred CCeEEEEEEeCCCCEEEEecCCeEE-EeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEEC
Confidence 45688888766 677788777787 7887765533321 111345799999999888544332222
Q ss_pred CCccc-------cCCcceEEEeecCCCe-EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEE
Q 006825 403 DTSSE-------KGGRRSSSATDDSQDV-SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASA 474 (630)
Q Consensus 403 dt~s~-------~gh~~~Vsa~~~s~d~-l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASg 474 (630)
.+... ......|.++....++ ++.|...+-|..|+..++.+...... .-....|.+|...++|++.+ |
T Consensus 391 ~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~---~~~~~~v~~i~~d~~g~lwi-g 466 (781)
T 3v9f_A 391 GKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELE---KNELLDVRVFYEDKNKKIWI-G 466 (781)
T ss_dssp TEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCST---TTCCCCEEEEEECTTSEEEE-E
T ss_pred CCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccC---CCCCCeEEEEEECCCCCEEE-E
Confidence 11111 1123456666655445 88888877888898876643211100 12346799999998888555 4
Q ss_pred eCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEe
Q 006825 475 GEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFA 554 (630)
Q Consensus 475 S~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwd 554 (630)
.. +-|.+||..+++................|.++...++|.+.+.....|.. .++
T Consensus 467 t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~------------------------~~~ 521 (781)
T 3v9f_A 467 TH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVG------------------------IYT 521 (781)
T ss_dssp ET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEE------------------------EEC
T ss_pred EC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEE------------------------EEe
Confidence 44 55888998776543221100001113578899999999877765445543 233
Q ss_pred CCCCceEEecc----CCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEe-----cCCceEEEE-cCCCc
Q 006825 555 LSDKPICSFQG----HLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-----HSDYDISLV-DRLML 619 (630)
Q Consensus 555 lsgk~l~tL~G----Hs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~l~t~~-----H~~~V~sVa-s~~~~ 619 (630)
.....+..+.. ....|.++...+++.|..|...|-|..||..+++. ..+. ....|.++. ++.+.
T Consensus 522 ~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~~~-~~~~~~~gl~~~~i~~i~~d~~g~ 595 (781)
T 3v9f_A 522 PDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATGEGLVCFPSARNFDY-QVFQRKEGLPNTHIRAISEDKNGN 595 (781)
T ss_dssp TTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEETTEEEEESCTTTCCC-EEECGGGTCSCCCCCEEEECSSSC
T ss_pred CCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEECCCceEEECCCCCcE-EEccccCCCCCceEEEEEECCCCC
Confidence 32222222321 23568899888875555555666658899887763 3343 234577777 54443
No 266
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=96.56 E-value=0.81 Score=46.59 Aligned_cols=148 Identities=5% Similarity=-0.082 Sum_probs=87.6
Q ss_pred EEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCC--CcEEEEECcCCceeeeeecccccCc
Q 006825 425 FHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED--CVIHVWQVVESERKGELLEKQEDGH 502 (630)
Q Consensus 425 ~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~D--gtIrVWDl~tg~~~~~l~~~~~~gh 502 (630)
++-...++|.+++...... ...+.........|++.|.+.+|+.+... +.|...++. +.....+. ...
T Consensus 93 ~~d~~~~~I~~~~~~g~~~-----~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~----~~~ 162 (316)
T 1ijq_A 93 WTDSVLGTVSVADTKGVKR-----KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLV----TEN 162 (316)
T ss_dssp EEETTTTEEEEEETTSSSE-----EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEE----CSS
T ss_pred EEECCCCEEEEEeCCCCce-----EEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEE----ECC
Confidence 4444566788887764421 11122233567899999966555444432 678777774 33333331 222
Q ss_pred ccceEEEEECCCCCEEEE-eeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEecc---CCCCEEEEEEcCC
Q 006825 503 LNMLLLANGSPEPTSLSP-KHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQG---HLDDVLDLSWSKS 578 (630)
Q Consensus 503 ~~~V~svafSpdg~~las-gs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~G---Hs~~V~sLafSPd 578 (630)
......+++++++..|.. -...+.| ..+++.|....++.. .-.....|++..+
T Consensus 163 ~~~P~gla~d~~~~~lY~~D~~~~~I-----------------------~~~d~dg~~~~~~~~~~~~~~~P~giav~~~ 219 (316)
T 1ijq_A 163 IQWPNGITLDLLSGRLYWVDSKLHSI-----------------------SSIDVNGGNRKTILEDEKRLAHPFSLAVFED 219 (316)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEE-----------------------EEEETTSCSCEEEEECTTTTSSEEEEEEETT
T ss_pred CCCceEEEEeccCCEEEEEECCCCeE-----------------------EEEecCCCceEEEeecCCccCCcEEEEEECC
Confidence 345678999987655544 4444555 555555544444421 2234567777554
Q ss_pred CeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825 579 QHLLSSSMDKTVRLWHLSSKTCLKIFS 605 (630)
Q Consensus 579 ~~LaSgS~DgtVrIWDl~tg~~l~t~~ 605 (630)
.++++-...+.|..++..+|+.+.++.
T Consensus 220 ~ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 220 KVFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp EEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EEEEEECCCCeEEEEeCCCCcceEEEe
Confidence 666677778899999988887666664
No 267
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=96.53 E-value=0.54 Score=49.57 Aligned_cols=193 Identities=7% Similarity=-0.077 Sum_probs=106.2
Q ss_pred CccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEe
Q 006825 358 SFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYG 437 (630)
Q Consensus 358 ~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd 437 (630)
..|+ ..++.++....... -......|+|.+.+..| +++-...++|+.++
T Consensus 96 ~~I~-~i~~~~~~~~~~~~--~~~~~~gl~~d~~~~~l----------------------------y~~D~~~~~I~r~~ 144 (386)
T 3v65_B 96 IDIR-QVLPHRSEYTLLLN--NLENAIALDFHHRRELV----------------------------FWSDVTLDRILRAN 144 (386)
T ss_dssp SCEE-EECTTSCCCEEEEC--SCSCEEEEEEETTTTEE----------------------------EEEETTTTEEEEEE
T ss_pred ccce-eeccCCCcEEEEec--CCCccEEEEEecCCCeE----------------------------EEEeCCCCcEEEEe
Confidence 3455 55555444333332 34457788888754433 23444556788888
Q ss_pred CCCCcccceeeeeEecccCcCEEEEEEccC-CCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCC
Q 006825 438 KSCKDLTALYKCQEIQAHNGSIWSIKFSLD-GRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPT 516 (630)
Q Consensus 438 ~~~~el~~~~~v~tL~gHt~~V~sVaFSpD-G~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~ 516 (630)
....... ..+.........|++.+. ++++++-...+.|.+.++.... ...+. .........+++.|.+.
T Consensus 145 ~~g~~~~-----~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~-~~~l~----~~~l~~P~giavdp~~g 214 (386)
T 3v65_B 145 LNGSNVE-----EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-RKVLL----WQSLEKPRAIALHPMEG 214 (386)
T ss_dssp TTSCCEE-----EEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCS-CEEEE----CSSCSCEEEEEEETTTT
T ss_pred cCCCCcE-----EEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc-eEEee----cCCCCCCcEEEEEcCCC
Confidence 7655321 112222334567899874 5555666667788888876433 22321 22334567889998755
Q ss_pred EEEEee-CC-CeeeeecccccccccccccCccccccEEEeCCCCceEEec-cCCCCEEEEEEcCC-Ce-EEEEECCCcEE
Q 006825 517 SLSPKH-LD-NHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ-GHLDDVLDLSWSKS-QH-LLSSSMDKTVR 591 (630)
Q Consensus 517 ~lasgs-~D-g~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~-GHs~~V~sLafSPd-~~-LaSgS~DgtVr 591 (630)
.|.... .. ..| ..+++.|.....+. ..-...+.|+|+|+ +. +++=+..+.|.
T Consensus 215 ~ly~td~~~~~~I-----------------------~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~ 271 (386)
T 3v65_B 215 TIYWTDWGNTPRI-----------------------EASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIE 271 (386)
T ss_dssp EEEEEECSSSCEE-----------------------EEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEE
T ss_pred eEEEeccCCCCEE-----------------------EEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEE
Confidence 554432 22 334 34445555444442 22345688999876 44 45556677888
Q ss_pred EEeCCCCcEEEEEe-cCCceEEEE
Q 006825 592 LWHLSSKTCLKIFS-HSDYDISLV 614 (630)
Q Consensus 592 IWDl~tg~~l~t~~-H~~~V~sVa 614 (630)
.+|+........+. .......|+
T Consensus 272 ~~d~dG~~~~~~~~~~~~~P~gia 295 (386)
T 3v65_B 272 RANLDGSHRKAVISQGLPHPFAIT 295 (386)
T ss_dssp EECTTSCSCEEEECSSCSSEEEEE
T ss_pred EEeCCCCeeEEEEECCCCCceEEE
Confidence 88876433322232 333444555
No 268
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=96.48 E-value=1.1 Score=47.33 Aligned_cols=157 Identities=5% Similarity=-0.083 Sum_probs=93.6
Q ss_pred EEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEe--CCCcEEEEECcCCceeeeeecccccCc
Q 006825 425 FHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG--EDCVIHVWQVVESERKGELLEKQEDGH 502 (630)
Q Consensus 425 ~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS--~DgtIrVWDl~tg~~~~~l~~~~~~gh 502 (630)
++-...+.|.+.+...... ...+.........|++.|.+.+|+-.. ..+.|...++... ....+. ...
T Consensus 175 ~~d~~~~~I~~~~~~g~~~-----~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~-~~~~~~----~~~ 244 (400)
T 3p5b_L 175 WTDSVLGTVSVADTKGVKR-----KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLV----TEN 244 (400)
T ss_dssp EEETTTTEEEEECTTTCSE-----EEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSC-SCEEEE----CSS
T ss_pred EEECCCCeEEEEeCCCCce-----EEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCC-ccEEEE----ECC
Confidence 4445566788887765431 112233344578999999655554443 2367888887543 333331 223
Q ss_pred ccceEEEEECCCCCEEEEe-eCCCeeeeecccccccccccccCccccccEEEeCCCCceEEec---cCCCCEEEEEEcCC
Q 006825 503 LNMLLLANGSPEPTSLSPK-HLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ---GHLDDVLDLSWSKS 578 (630)
Q Consensus 503 ~~~V~svafSpdg~~lasg-s~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~---GHs~~V~sLafSPd 578 (630)
......|++++++..|..+ .....| ..+++.|....++. +.-.....|++..+
T Consensus 245 l~~P~glavd~~~~~lY~aD~~~~~I-----------------------~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~~ 301 (400)
T 3p5b_L 245 IQWPNGITLDLLSGRLYWVDSKLHSI-----------------------SSIDVNGGNRKTILEDEKRLAHPFSLAVFED 301 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEE-----------------------EEEETTSCCCEEEEECSSTTSSEEEEEEETT
T ss_pred CCceEEEEEEeCCCEEEEEECCCCEE-----------------------EEEeCCCCccEEEEeCCCCCCCCEEEEEeCC
Confidence 3566789999876655554 334455 45555555444442 12334567777555
Q ss_pred CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE
Q 006825 579 QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV 614 (630)
Q Consensus 579 ~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa 614 (630)
.++++-...+.|..+|..+|+.+.++. .......|+
T Consensus 302 ~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~ 338 (400)
T 3p5b_L 302 KVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMV 338 (400)
T ss_dssp EEEEEESSSCSEEEEESSSCCCCEEEECSCSCEEEEE
T ss_pred EEEEecCCCCeEEEEEcCCCCceEEEecCCCCCceEE
Confidence 677777788999999988887776665 333455554
No 269
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=96.43 E-value=0.35 Score=53.99 Aligned_cols=26 Identities=8% Similarity=0.103 Sum_probs=21.6
Q ss_pred ceEeecCCCccEecccCCCCceeEEec
Q 006825 350 NVEEGNKDSFDLNNNGSSGGGMKSKKK 376 (630)
Q Consensus 350 ~laSgS~D~tvr~vWD~~tG~~~~~lk 376 (630)
.+..++.|+.+. ..|.+||+.+-+..
T Consensus 117 ~v~v~~~dg~l~-alD~~tG~~~W~~~ 142 (571)
T 2ad6_A 117 QIVKKQANGHLL-ALDAKTGKINWEVE 142 (571)
T ss_dssp EEEEECTTSEEE-EEETTTCCEEEEEE
T ss_pred EEEEEeCCCEEE-EEECCCCCEEEEec
Confidence 567778889999 99999999887665
No 270
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=96.43 E-value=1.1 Score=52.26 Aligned_cols=149 Identities=5% Similarity=-0.087 Sum_probs=88.8
Q ss_pred EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEe-C-CCcEEEEECcCCceeeeeecccccC
Q 006825 424 SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG-E-DCVIHVWQVVESERKGELLEKQEDG 501 (630)
Q Consensus 424 l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS-~-DgtIrVWDl~tg~~~~~l~~~~~~g 501 (630)
+|+-...++|.+.++..... ...+.........|++.|.+.+|+-.. . ...|.+.++.. .....++ ..
T Consensus 486 Y~tD~~~~~I~v~~ldG~~~-----~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG-~~~~~lv----~~ 555 (791)
T 3m0c_C 486 YWTDSVLGTVSVADTKGVKR-----KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLV----TE 555 (791)
T ss_dssp EEEETTTTEEEEEETTSSSE-----EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEE----CS
T ss_pred EEEecCCCeEEEEeCCCCeE-----EEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCC-CceEEEE----eC
Confidence 34555667888888765431 112233445688999999755554443 2 36788888753 3333332 23
Q ss_pred cccceEEEEECCCCCEEEEe-eCCCeeeeecccccccccccccCccccccEEEeCCCCceEEecc---CCCCEEEEEEcC
Q 006825 502 HLNMLLLANGSPEPTSLSPK-HLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQG---HLDDVLDLSWSK 577 (630)
Q Consensus 502 h~~~V~svafSpdg~~lasg-s~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~G---Hs~~V~sLafSP 577 (630)
.......|++.+....|..+ .....| ..+++.|..+.++.. .-.....|++..
T Consensus 556 ~l~~P~GLavD~~~~~LYwaD~~~~~I-----------------------~~~d~dG~~~~~v~~~~~~l~~P~glav~~ 612 (791)
T 3m0c_C 556 NIQWPNGITLDLLSGRLYWVDSKLHSI-----------------------SSIDVNGGNRKTILEDEKRLAHPFSLAVFE 612 (791)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEE-----------------------EEEETTSCSCEEEEECTTTTSSEEEEEEET
T ss_pred CCCCceEEEEecCCCeEEEEeCCCCcE-----------------------EEEecCCCceEEEecCCCccCCCCEEEEeC
Confidence 33567789998765555544 333445 455555555444421 223446777765
Q ss_pred CCeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825 578 SQHLLSSSMDKTVRLWHLSSKTCLKIFS 605 (630)
Q Consensus 578 d~~LaSgS~DgtVrIWDl~tg~~l~t~~ 605 (630)
+.++++-...+.|...|..+|+.+.++.
T Consensus 613 ~~lYwtD~~~~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 613 DKVFWTDIINEAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp TEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred CEEEEEECCCCEEEEEeCCCCcceEEee
Confidence 5666677777888888887886666554
No 271
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=96.42 E-value=0.16 Score=57.31 Aligned_cols=80 Identities=11% Similarity=-0.037 Sum_probs=43.1
Q ss_pred eEEEEcCCCceEeeecceeeecCccceeEEEeec---ceEeec-CCCccEecccCCCCceeEEecCCccCC-EEEEEEcC
Q 006825 316 KKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQ---NVEEGN-KDSFDLNNNGSSGGGMKSKKKGSWFKS-IRTVASSV 390 (630)
Q Consensus 316 ~~l~dv~TG~~lt~eef~~l~GHs~~V~~Lafs~---~laSgS-~D~tvr~vWD~~tG~~~~~lk~gH~~~-V~sVAfSp 390 (630)
..++|+.|++...+..+ ...+......+++.. .++.|+ .+..+. +||..+++...... .+..+ --++++.+
T Consensus 221 ~~~yd~~t~~w~~~~~~--~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~-~yd~~t~~W~~~~~-~~~~R~~~s~~~~~ 296 (656)
T 1k3i_A 221 TSSWDPSTGIVSDRTVT--VTKHDMFCPGISMDGNGQIVVTGGNDAKKTS-LYDSSSDSWIPGPD-MQVARGYQSSATMS 296 (656)
T ss_dssp EEEECTTTCCBCCCEEE--ECSCCCSSCEEEECTTSCEEEECSSSTTCEE-EEEGGGTEEEECCC-CSSCCSSCEEEECT
T ss_pred EEEEeCCCCcEEeCccc--CCCCCCccccccCCCCCCEEEeCCCCCCceE-EecCcCCceeECCC-CCccccccceEEec
Confidence 45677777766533221 122333333445443 456665 456788 99998876544322 22222 12455667
Q ss_pred CCCeEEeec
Q 006825 391 TGHKERRSS 399 (630)
Q Consensus 391 dG~~lasgS 399 (630)
+|+.++.|+
T Consensus 297 dg~iyv~GG 305 (656)
T 1k3i_A 297 DGRVFTIGG 305 (656)
T ss_dssp TSCEEEECC
T ss_pred CCeEEEEeC
Confidence 888777665
No 272
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=96.33 E-value=0.98 Score=45.34 Aligned_cols=99 Identities=10% Similarity=0.041 Sum_probs=59.0
Q ss_pred CEEEEEEccCCCEE-EEEeCCCcEEEEECcC-Ccee-eeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccc
Q 006825 458 SIWSIKFSLDGRYL-ASAGEDCVIHVWQVVE-SERK-GELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGR 534 (630)
Q Consensus 458 ~V~sVaFSpDG~~L-ASgS~DgtIrVWDl~t-g~~~-~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~ 534 (630)
....| ++++++| ++-...+.|.++++.. +... ...+ . . ......+++.++|.++++....+.|
T Consensus 170 ~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~-~--~--~~~P~gi~vd~dG~l~va~~~~~~V------- 235 (306)
T 2p4o_A 170 AANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIF-V--E--QTNIDDFAFDVEGNLYGATHIYNSV------- 235 (306)
T ss_dssp SEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEE-E--E--SCCCSSEEEBTTCCEEEECBTTCCE-------
T ss_pred cCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEE-e--c--cCCCCCeEECCCCCEEEEeCCCCeE-------
Confidence 34555 7888755 4455678899999864 3211 1111 0 0 1234467888899887776666666
Q ss_pred cccccccccCccccccEEEeCCCCceE--EeccCCCCEEEEEEc---CC-CeEEEEEC
Q 006825 535 SINRKSLSLDHMVVPETVFALSDKPIC--SFQGHLDDVLDLSWS---KS-QHLLSSSM 586 (630)
Q Consensus 535 ~~~~~s~s~d~~i~~~~Vwdlsgk~l~--tL~GHs~~V~sLafS---Pd-~~LaSgS~ 586 (630)
.+++..|+... .+.......++++|. |+ ++|..+..
T Consensus 236 ----------------~~~~~~G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 236 ----------------VRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp ----------------EEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred ----------------EEECCCCCEEEEeecccccCCceEEEEecccCCCCEEEEECC
Confidence 55666655432 233334568999998 77 65554443
No 273
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=96.05 E-value=1.6 Score=44.66 Aligned_cols=212 Identities=8% Similarity=-0.042 Sum_probs=108.8
Q ss_pred cCCEEEEEEcCCCCeEEeecCCC-----CCcc------c--cCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccce
Q 006825 380 FKSIRTVASSVTGHKERRSSDER-----DTSS------E--KGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTAL 446 (630)
Q Consensus 380 ~~~V~sVAfSpdG~~lasgS~D~-----dt~s------~--~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~ 446 (630)
...|++|+|.+.+..++.|.... |-+. . ......+..+.+.+..++..+..+.|..-.-.....
T Consensus 35 ~~~~~~v~~~~~~~~~~~G~~g~i~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~g~i~~S~DgG~tW--- 111 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLVGVNATLMETRDGGQTWEPRTLVLDHSDYRFNSVSFQGNEGWIVGEPPIMLHTTDGGQSW--- 111 (327)
T ss_dssp SSCEEEEEESSSSCEEEEETTTEEEEESSTTSSCEECCCCCSCCCCEEEEEEEETTEEEEEEETTEEEEESSTTSSC---
T ss_pred CCcEEEEEECCCCcEEEEcCCCeEEEeCCCCCCCeECCCCCCCCCccEEEEEecCCeEEEEECCCeEEEECCCCCCc---
Confidence 44688888887777666554321 1110 1 112334555665554454455566555432111111
Q ss_pred eeeeEecccCcCEEEEEEccCCCEEEEEeCCCcE-EEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCC
Q 006825 447 YKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVI-HVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN 525 (630)
Q Consensus 447 ~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtI-rVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg 525 (630)
..+.....+.+.++.|.+.+++++++.+. ++.| +-+| .|+.-..+ ..+....+..+.+.+++.+++.+. .+
T Consensus 112 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~g~v~~S~D--gG~tW~~~----~~~~~~~~~~~~~~~~~~~~~~g~-~G 183 (327)
T 2xbg_A 112 SQIPLDPKLPGSPRLIKALGNGSAEMITN-VGAIYRTKD--SGKNWQAL----VQEAIGVMRNLNRSPSGEYVAVSS-RG 183 (327)
T ss_dssp EECCCCTTCSSCEEEEEEEETTEEEEEET-TCCEEEESS--TTSSEEEE----ECSCCCCEEEEEECTTSCEEEEET-TS
T ss_pred eECccccCCCCCeEEEEEECCCCEEEEeC-CccEEEEcC--CCCCCEEe----ecCCCcceEEEEEcCCCcEEEEEC-CC
Confidence 11111112445688898888888777654 5544 3333 23333222 134445788899999998887764 34
Q ss_pred eeeeecccccccccccccCccccccEEEeCCCCceEEe-ccCCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEE
Q 006825 526 HLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSF-QGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIF 604 (630)
Q Consensus 526 ~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL-~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~l~t~ 604 (630)
.+. +.++..++.-..+ .++...+..+++.+++.++.++.+|.|+++....|+--..+
T Consensus 184 ~~~----------------------~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~ 241 (327)
T 2xbg_A 184 SFY----------------------STWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGEL 241 (327)
T ss_dssp SEE----------------------EEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCC
T ss_pred cEE----------------------EEeCCCCCceeECCCCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCeeEec
Confidence 331 1111111111111 23456788899988855556667888887753323322222
Q ss_pred e-----cCCceEEEE-cCCCcEEEEe
Q 006825 605 S-----HSDYDISLV-DRLMLRFAYG 624 (630)
Q Consensus 605 ~-----H~~~V~sVa-s~~~~~lAsg 624 (630)
. +...+.+|+ .+....++.+
T Consensus 242 ~~~~~~~~~~~~~v~~~~~~~~~~~g 267 (327)
T 2xbg_A 242 LSPLRRNSVGFLDLAYRTPNEVWLAG 267 (327)
T ss_dssp BCTTSSCCSCEEEEEESSSSCEEEEE
T ss_pred cCCcccCCcceEEEEecCCCEEEEEe
Confidence 1 123466666 4444444444
No 274
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=96.02 E-value=1.5 Score=44.05 Aligned_cols=120 Identities=9% Similarity=0.012 Sum_probs=64.7
Q ss_pred CCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCccccee
Q 006825 368 GGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALY 447 (630)
Q Consensus 368 tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~ 447 (630)
+.+.+..+..+ .....++++++|+++++ -...++|..|+.....
T Consensus 21 ~~~~~~~~p~~--~~pegia~~~~g~lyv~-----------------------------d~~~~~I~~~d~~g~~----- 64 (306)
T 2p4o_A 21 PAKIITSFPVN--TFLENLASAPDGTIFVT-----------------------------NHEVGEIVSITPDGNQ----- 64 (306)
T ss_dssp CEEEEEEECTT--CCEEEEEECTTSCEEEE-----------------------------ETTTTEEEEECTTCCE-----
T ss_pred CceEeEeCCCC--CCcceEEECCCCCEEEE-----------------------------eCCCCeEEEECCCCce-----
Confidence 34445555422 45667888888775432 2345667888765431
Q ss_pred eeeEecccCcCEEEEEEccCCCEEEEEeCC-C-cEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCC
Q 006825 448 KCQEIQAHNGSIWSIKFSLDGRYLASAGED-C-VIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN 525 (630)
Q Consensus 448 ~v~tL~gHt~~V~sVaFSpDG~~LASgS~D-g-tIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg 525 (630)
...+ .-......|+|.++|+++++.... + .|..++..+++..... . .........++..+++..+++....+
T Consensus 65 -~~~~-~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~-~---~~~~~~~~g~~~~~~~~~~v~d~~~g 138 (306)
T 2p4o_A 65 -QIHA-TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLL-T---LPDAIFLNGITPLSDTQYLTADSYRG 138 (306)
T ss_dssp -EEEE-ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEE-E---CTTCSCEEEEEESSSSEEEEEETTTT
T ss_pred -EEEE-eCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEE-e---CCCccccCcccccCCCcEEEEECCCC
Confidence 1111 122458899999999977665433 2 3666677776643221 1 11112233444455555555554556
Q ss_pred eeee
Q 006825 526 HLEK 529 (630)
Q Consensus 526 ~I~i 529 (630)
.|..
T Consensus 139 ~i~~ 142 (306)
T 2p4o_A 139 AIWL 142 (306)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 6533
No 275
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=95.93 E-value=1.3 Score=49.50 Aligned_cols=26 Identities=27% Similarity=0.156 Sum_probs=21.8
Q ss_pred ceEeecCCCccEecccCCCCceeEEec
Q 006825 350 NVEEGNKDSFDLNNNGSSGGGMKSKKK 376 (630)
Q Consensus 350 ~laSgS~D~tvr~vWD~~tG~~~~~lk 376 (630)
.+..++.|+.+. ..|.+||+.+-+..
T Consensus 119 ~v~~~t~dg~l~-AlD~~TG~~~W~~~ 144 (582)
T 1flg_A 119 KVFFGTLDASVV-ALNKNTGKVVWKKK 144 (582)
T ss_dssp EEEEEETTTEEE-EEESSSCCEEEEEE
T ss_pred EEEEEeCCCEEE-EEECCCCCEEeeec
Confidence 567778899998 99999999887765
No 276
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=95.93 E-value=1 Score=46.26 Aligned_cols=141 Identities=8% Similarity=-0.052 Sum_probs=80.4
Q ss_pred EEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc-CCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcc
Q 006825 425 FHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHL 503 (630)
Q Consensus 425 ~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp-DG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~ 503 (630)
++-...++|+.++........ ..+.........|++.+ .++++++-...+.|.++++.... ...+. ....
T Consensus 51 w~D~~~~~I~r~~~~g~~~~~----~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~-~~~l~----~~~~ 121 (318)
T 3sov_A 51 WSDVSEEAIKRTEFNKTESVQ----NVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL-RKVLF----WQEL 121 (318)
T ss_dssp EEETTTTEEEEEETTSSSCCC----EEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEE----CSSC
T ss_pred EEECCCCcEEEEEccCCCceE----EEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCc-EEEEE----eCCC
Confidence 444456778888876542111 11222234567899987 55566666677889999986433 23331 2333
Q ss_pred cceEEEEECCCCCEEEEeeC--CCeeeeecccccccccccccCccccccEEEeCCCCceEEec-cCCCCEEEEEEcCC-C
Q 006825 504 NMLLLANGSPEPTSLSPKHL--DNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ-GHLDDVLDLSWSKS-Q 579 (630)
Q Consensus 504 ~~V~svafSpdg~~lasgs~--Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~-GHs~~V~sLafSPd-~ 579 (630)
.....+++.|.+..|..+.. ...| ...++.|.....+. ..-..-+.|+|+|+ +
T Consensus 122 ~~P~giavdp~~g~ly~td~~~~~~I-----------------------~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~ 178 (318)
T 3sov_A 122 DQPRAIALDPSSGFMYWTDWGEVPKI-----------------------ERAGMDGSSRFIIINSEIYWPNGLTLDYEEQ 178 (318)
T ss_dssp SSEEEEEEEGGGTEEEEEECSSSCEE-----------------------EEEETTSCSCEEEECSSCSCEEEEEEETTTT
T ss_pred CCccEEEEeCCCCEEEEEecCCCCEE-----------------------EEEEcCCCCeEEEEECCCCCccEEEEeccCC
Confidence 45678888886544444432 2344 33444554444432 22234578888886 4
Q ss_pred e-EEEEECCCcEEEEeCCC
Q 006825 580 H-LLSSSMDKTVRLWHLSS 597 (630)
Q Consensus 580 ~-LaSgS~DgtVrIWDl~t 597 (630)
. +++=+..+.|..+|+..
T Consensus 179 ~lY~aD~~~~~I~~~d~dG 197 (318)
T 3sov_A 179 KLYWADAKLNFIHKSNLDG 197 (318)
T ss_dssp EEEEEETTTTEEEEEETTS
T ss_pred EEEEEECCCCEEEEEcCCC
Confidence 4 44555677888888764
No 277
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=95.91 E-value=0.54 Score=53.01 Aligned_cols=25 Identities=12% Similarity=-0.036 Sum_probs=21.1
Q ss_pred eEeecCCCccEecccCCCCceeEEec
Q 006825 351 VEEGNKDSFDLNNNGSSGGGMKSKKK 376 (630)
Q Consensus 351 laSgS~D~tvr~vWD~~tG~~~~~lk 376 (630)
+..++.|+.+. ..|..||+.+-+..
T Consensus 124 V~v~t~dg~l~-AlDa~TG~~~W~~~ 148 (599)
T 1w6s_A 124 ILKTQLDGNVA-ALNAETGETVWKVE 148 (599)
T ss_dssp EEEECTTSEEE-EEETTTCCEEEEEE
T ss_pred EEEEcCCCEEE-EEECCCCCEEEeec
Confidence 77788899998 89999999887665
No 278
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=95.89 E-value=1.8 Score=43.98 Aligned_cols=180 Identities=6% Similarity=-0.089 Sum_probs=101.1
Q ss_pred CccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEe
Q 006825 358 SFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYG 437 (630)
Q Consensus 358 ~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd 437 (630)
..|+ .-|+.+++....+. ......+++|.+.+..+. ++-...++|+.++
T Consensus 10 ~~I~-~i~~~~~~~~~~~~--~~~~p~g~~~d~~~~~ly----------------------------~~D~~~~~I~~~~ 58 (316)
T 1ijq_A 10 HEVR-KMTLDRSEYTSLIP--NLRNVVALDTEVASNRIY----------------------------WSDLSQRMICSTQ 58 (316)
T ss_dssp SSEE-EEETTSCCCEEEEC--SCSSEEEEEEETTTTEEE----------------------------EEETTTTEEEEEE
T ss_pred CeEE-EEECCCcceEehhc--CCCceEEEEEEeCCCEEE----------------------------EEECCCCcEEEEE
Confidence 3455 55666665444433 355677888887654332 3444456788787
Q ss_pred CCCCcccceeeeeEecccCcCEEEEEEccC-CCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCC
Q 006825 438 KSCKDLTALYKCQEIQAHNGSIWSIKFSLD-GRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPT 516 (630)
Q Consensus 438 ~~~~el~~~~~v~tL~gHt~~V~sVaFSpD-G~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~ 516 (630)
........ .....+.........|++.+. +++.++-...+.|.+.++.... ...+. .........+++.|.+.
T Consensus 59 ~~g~~~~~-~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~-~~~~~----~~~~~~P~~iavdp~~g 132 (316)
T 1ijq_A 59 LDRAHGVS-SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLF----RENGSKPRAIVVDPVHG 132 (316)
T ss_dssp C---------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS-EEEEE----ECTTCCEEEEEEETTTT
T ss_pred CCCCCCCc-ccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCc-eEEEE----ECCCCCcceEEeCCCCC
Confidence 65410000 001112222345678999874 4555665678899999986433 33332 22234567889998655
Q ss_pred EEEEeeCC--CeeeeecccccccccccccCccccccEEEeCCCCceEEec-cCCCCEEEEEEcCC-CeE-EEEECCCcEE
Q 006825 517 SLSPKHLD--NHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ-GHLDDVLDLSWSKS-QHL-LSSSMDKTVR 591 (630)
Q Consensus 517 ~lasgs~D--g~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~-GHs~~V~sLafSPd-~~L-aSgS~DgtVr 591 (630)
.+..+... +.| ..+++.|.....+. ..-...+.|+|+|+ +.| ++-+..+.|.
T Consensus 133 ~ly~~d~~~~~~I-----------------------~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~ 189 (316)
T 1ijq_A 133 FMYWTDWGTPAKI-----------------------KKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS 189 (316)
T ss_dssp EEEEEECSSSCEE-----------------------EEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred EEEEEccCCCCeE-----------------------EEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEE
Confidence 44443322 344 34445555555442 22345688999987 544 4555677899
Q ss_pred EEeCCC
Q 006825 592 LWHLSS 597 (630)
Q Consensus 592 IWDl~t 597 (630)
.+|+..
T Consensus 190 ~~d~dg 195 (316)
T 1ijq_A 190 SIDVNG 195 (316)
T ss_dssp EEETTS
T ss_pred EEecCC
Confidence 999864
No 279
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=95.56 E-value=0.048 Score=62.68 Aligned_cols=157 Identities=4% Similarity=-0.086 Sum_probs=87.1
Q ss_pred EEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEe-CC-CcEEEEECcCCceeeeeecccccCc
Q 006825 425 FHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG-ED-CVIHVWQVVESERKGELLEKQEDGH 502 (630)
Q Consensus 425 ~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS-~D-gtIrVWDl~tg~~~~~l~~~~~~gh 502 (630)
++-...++|.+++...... ...+.........|++.|.+.+|+.+. .. +.|.+.++.. .....+. ...
T Consensus 469 ~tD~~~~~I~v~d~dg~~~-----~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG-~~~~~l~----~~~ 538 (699)
T 1n7d_A 469 WTDSVLGTVSVADTKGVKR-----KTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLV----TEN 538 (699)
T ss_dssp ECCTTTSCEEEEBSSSCCE-----EEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS-CCCCEES----CSS
T ss_pred EEeccCCeEEEEecCCCce-----EEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCC-CCeeEEE----eCC
Confidence 4444556788887765421 111222223457889998655444333 22 6777777643 2222221 122
Q ss_pred ccceEEEEECCCC-CEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEecc---CCCCEEEEEEcCC
Q 006825 503 LNMLLLANGSPEP-TSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQG---HLDDVLDLSWSKS 578 (630)
Q Consensus 503 ~~~V~svafSpdg-~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~G---Hs~~V~sLafSPd 578 (630)
......|+++|++ +++++-.....| .++++.|....++.. .......|++..+
T Consensus 539 l~~PnGlavd~~~~~LY~aD~~~~~I-----------------------~~~d~dG~~~~~~~~~~~~~~~P~glavd~~ 595 (699)
T 1n7d_A 539 IQWPNGITLDLLSGRLYWVDSKLHSI-----------------------SSIDVNGGNRKTILEDEKRLAHPFSLAVFED 595 (699)
T ss_dssp CSSCCCEEECTTTCCEEEEETTTTEE-----------------------EEECSSSSCCEEECCCSSSCSSCCCCEEETT
T ss_pred CCCccEEEEeccCCEEEEEecCCCeE-----------------------EEEccCCCceEEEEecCCcCCCceEeEEECC
Confidence 2345678999874 455554455555 445554444444321 1123345666555
Q ss_pred CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE
Q 006825 579 QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV 614 (630)
Q Consensus 579 ~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa 614 (630)
.++++....+.|..++..+|+.+.++. ....++.|+
T Consensus 596 ~lywtd~~~~~V~~~d~~~G~~~~~i~~~~~~P~~i~ 632 (699)
T 1n7d_A 596 KVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMV 632 (699)
T ss_dssp EEEEECSTTTCEEEEETTTEEEEECCCTTCSSCCCCC
T ss_pred EEEEEeCCCCeEEEEEccCCCceEEeecCCCCCcEEE
Confidence 666777778999999998998888775 333344444
No 280
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=95.48 E-value=3.4 Score=44.28 Aligned_cols=165 Identities=10% Similarity=-0.028 Sum_probs=87.0
Q ss_pred CccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCC----------CccccCC-----cceEEEeecCC-
Q 006825 358 SFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERD----------TSSEKGG-----RRSSSATDDSQ- 421 (630)
Q Consensus 358 ~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~d----------t~s~~gh-----~~~Vsa~~~s~- 421 (630)
..|+ .+|..+|..... . +-......|||+++|+++++-..... ....... -..-..+++.+
T Consensus 162 ~~I~-~id~~~g~v~~~-~-~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~ 238 (433)
T 4hw6_A 162 DAFR-HVDFVNQYVDIK-T-TNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLCNARGAKTCAVHPQ 238 (433)
T ss_dssp SCEE-EEETTTTEEEEE-C-CCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEEECSSBCCCEECTT
T ss_pred CCEE-EEECCCCEEEEe-e-cCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccccccccCCCCEEEEeCC
Confidence 6777 778777765443 3 45667889999999996666432210 0001000 00011123333
Q ss_pred Ce-EE-EecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCC-EEEEEeCCCcEEEEECc--CCcee--eee
Q 006825 422 DV-SF-HGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGR-YLASAGEDCVIHVWQVV--ESERK--GEL 494 (630)
Q Consensus 422 d~-l~-Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~-~LASgS~DgtIrVWDl~--tg~~~--~~l 494 (630)
.+ ++ +-...+.|+.++..++.... .+... +....-..|+|+|+|+ ++++-...+.|+.+++. ++... ..+
T Consensus 239 ~G~lyv~d~~~~~V~~~d~~~g~~~~--~~~~~-~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ 315 (433)
T 4hw6_A 239 NGKIYYTRYHHAMISSYDPATGTLTE--EEVMM-DTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIV 315 (433)
T ss_dssp TCCEEECBTTCSEEEEECTTTCCEEE--EEEEC-SCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEE
T ss_pred CCeEEEEECCCCEEEEEECCCCeEEE--EEecc-CCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEE
Confidence 33 43 44456788888876554310 01111 1122335799999999 44555566889998865 22211 111
Q ss_pred ecc-cccC---------cccceEEEEE---------CCCCCEEEEeeCCCeee
Q 006825 495 LEK-QEDG---------HLNMLLLANG---------SPEPTSLSPKHLDNHLE 528 (630)
Q Consensus 495 ~~~-~~~g---------h~~~V~svaf---------Spdg~~lasgs~Dg~I~ 528 (630)
... ...+ .......+++ .+++.++++-.....|+
T Consensus 316 ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~ 368 (433)
T 4hw6_A 316 CGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVR 368 (433)
T ss_dssp EECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEE
T ss_pred EecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEE
Confidence 100 0011 1223456888 67777777766666664
No 281
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=95.33 E-value=4.1 Score=47.47 Aligned_cols=145 Identities=6% Similarity=-0.111 Sum_probs=79.6
Q ss_pred EEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCC-CEEEEEeCCCcEEEEECcCCceeeeeecccccCcc
Q 006825 425 FHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDG-RYLASAGEDCVIHVWQVVESERKGELLEKQEDGHL 503 (630)
Q Consensus 425 ~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG-~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~ 503 (630)
++-...++|+.+++....... .....+.........|++.+.+ +++++-...+.|.+.++.... ...++ ....
T Consensus 440 ~sD~~~~~I~~~~l~g~~~~~-~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~-~~~l~----~~~l 513 (791)
T 3m0c_C 440 WSDLSQRMICSTQLDRAHGVS-SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLF----RENG 513 (791)
T ss_dssp EEETTTTEEEEEEC---------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS-EEEEE----ECTT
T ss_pred EeeccceeEEEEeccCCCCCc-ceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCe-EEEEE----eCCC
Confidence 444455677777765421100 0112233344567789999866 455566677899999986443 33432 2233
Q ss_pred cceEEEEECCCCCEEEEee-CC-CeeeeecccccccccccccCccccccEEEeCCCCceEEecc-CCCCEEEEEEcCC-C
Q 006825 504 NMLLLANGSPEPTSLSPKH-LD-NHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQG-HLDDVLDLSWSKS-Q 579 (630)
Q Consensus 504 ~~V~svafSpdg~~lasgs-~D-g~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~G-Hs~~V~sLafSPd-~ 579 (630)
.....|++.|...+|.... .. ..| .+.++.|..+.++.. .-...+.|++.+. +
T Consensus 514 ~~P~gIaVDp~~g~LYwtD~g~~~~I-----------------------~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~ 570 (791)
T 3m0c_C 514 SKPRAIVVDPVHGFMYWTDWGTPAKI-----------------------KKGGLNGVDIYSLVTENIQWPNGITLDLLSG 570 (791)
T ss_dssp CCEEEEEEETTTTEEEEEECSSSCEE-----------------------EEEETTSCCEEEEECSSCSCEEEEEEETTTT
T ss_pred CCcceEEEecCCCCEEEecCCCCCeE-----------------------EEEecCCCceEEEEeCCCCCceEEEEecCCC
Confidence 4577899998754444432 22 344 344455555544432 2245677888865 4
Q ss_pred eEE-EEECCCcEEEEeCCCC
Q 006825 580 HLL-SSSMDKTVRLWHLSSK 598 (630)
Q Consensus 580 ~La-SgS~DgtVrIWDl~tg 598 (630)
.|. +=...+.|...++...
T Consensus 571 ~LYwaD~~~~~I~~~d~dG~ 590 (791)
T 3m0c_C 571 RLYWVDSKLHSISSIDVNGG 590 (791)
T ss_dssp EEEEEETTTTEEEEEETTSC
T ss_pred eEEEEeCCCCcEEEEecCCC
Confidence 443 4345567777777543
No 282
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=95.31 E-value=2.7 Score=42.13 Aligned_cols=210 Identities=14% Similarity=0.068 Sum_probs=107.5
Q ss_pred eecCccceeEEEeec---ceEe-ecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCC
Q 006825 335 CVGHSPIVQELMRRQ---NVEE-GNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGG 410 (630)
Q Consensus 335 l~GHs~~V~~Lafs~---~laS-gS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh 410 (630)
+.|-..-+..|++.| .|.+ ...++.+. .-|.. |+.++++..+-..-.-.|++.++|.+.++. ++ .
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~-~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~--E~------~- 90 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIV-EMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISD--ER------D- 90 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEE-EEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEE--TT------T-
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEE-EEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEE--CC------C-
Confidence 344444577777776 2332 33355555 55665 777777653334567778888887765431 10 0
Q ss_pred cceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcC---
Q 006825 411 RRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVE--- 487 (630)
Q Consensus 411 ~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~t--- 487 (630)
..+. ++.-..++.+++-+.. .+ ... ...+......|+|+|.++.|.++.+-....||.+..
T Consensus 91 -~~l~--------~~~v~~~~~i~~~~~~--~~----~~~-~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~ 154 (255)
T 3qqz_A 91 -YAIY--------VISLTPNSEVKILKKI--KI----PLQ-ESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLS 154 (255)
T ss_dssp -TEEE--------EEEECTTCCEEEEEEE--EC----CCS-SCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTC
T ss_pred -CcEE--------EEEcCCCCeeeeeeee--cc----ccc-cccccCCcceEEEeCCCCEEEEEECcCCceEEEEccccc
Confidence 0111 1222222222111100 00 000 012345579999999998777777766666766641
Q ss_pred Cceeeeeeccc--ccCcccceEEEEECCCCC-EEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEec
Q 006825 488 SERKGELLEKQ--EDGHLNMLLLANGSPEPT-SLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ 564 (630)
Q Consensus 488 g~~~~~l~~~~--~~gh~~~V~svafSpdg~-~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~ 564 (630)
...+..+.... ...+...+..++++|... +++.......+ .+++..|+.+..+.
T Consensus 155 ~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L-----------------------~~~d~~g~~~~~~~ 211 (255)
T 3qqz_A 155 SNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRAL-----------------------QEVTLVGEVIGEMS 211 (255)
T ss_dssp SSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEE-----------------------EEECTTCCEEEEEE
T ss_pred CCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeE-----------------------EEEcCCCCEEEEEE
Confidence 11111111000 011233467899999844 44444444444 45556666544432
Q ss_pred ---cC------CCCEEEEEEcCCCeEEEEECCCcEEEEe
Q 006825 565 ---GH------LDDVLDLSWSKSQHLLSSSMDKTVRLWH 594 (630)
Q Consensus 565 ---GH------s~~V~sLafSPd~~LaSgS~DgtVrIWD 594 (630)
|. -..-..|+|.+++.|.-.|.-.-++.+.
T Consensus 212 L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n~~y~f~ 250 (255)
T 3qqz_A 212 LTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRFT 250 (255)
T ss_dssp CSTTGGGCSSCCCSEEEEEECTTCCEEEEETTTEEEEEE
T ss_pred cCCccCCcccccCCCCeeEECCCCCEEEEcCCceEEEEE
Confidence 21 1255889999994444447776555554
No 283
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=95.30 E-value=3 Score=42.54 Aligned_cols=224 Identities=11% Similarity=-0.021 Sum_probs=116.2
Q ss_pred ccceeEEEeec-ceEeecCCCccEecccCCCCceeEEecC--CccCCEEEEEEcCCCCeEEeecCCC-----CCcc----
Q 006825 339 SPIVQELMRRQ-NVEEGNKDSFDLNNNGSSGGGMKSKKKG--SWFKSIRTVASSVTGHKERRSSDER-----DTSS---- 406 (630)
Q Consensus 339 s~~V~~Lafs~-~laSgS~D~tvr~vWD~~tG~~~~~lk~--gH~~~V~sVAfSpdG~~lasgS~D~-----dt~s---- 406 (630)
...+..|+|.+ .+..++.++.+. . ....|+.-..+.. .+...+..|++.+++..++.+.... |-+.
T Consensus 79 ~~~~~~i~~~~~~~~~~g~~g~i~-~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~S~DgG~tW~~ 156 (327)
T 2xbg_A 79 DYRFNSVSFQGNEGWIVGEPPIML-H-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYRTKDSGKNWQA 156 (327)
T ss_dssp CCEEEEEEEETTEEEEEEETTEEE-E-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEEESSTTSSEEE
T ss_pred CccEEEEEecCCeEEEEECCCeEE-E-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeCCccEEEEcCCCCCCEE
Confidence 34577788877 222233344333 1 1223444333321 2334577788877777666554322 1111
Q ss_pred -ccCCcceEEEeecCCCe-EEEecCCcEE-EEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEE
Q 006825 407 -EKGGRRSSSATDDSQDV-SFHGQERVRV-RQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVW 483 (630)
Q Consensus 407 -~~gh~~~Vsa~~~s~d~-l~Sgs~Dg~V-riWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVW 483 (630)
..+....+..+.+.+++ ++..+..+.+ +.+|....... .+ -..+...+..|.+.+++++++ ++.+|.|+++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~---~~--~~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s 230 (327)
T 2xbg_A 157 LVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWE---PH--NRTTSRRLHNMGFTPDGRLWM-IVNGGKIAFS 230 (327)
T ss_dssp EECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCE---EE--ECCSSSCEEEEEECTTSCEEE-EETTTEEEEE
T ss_pred eecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCcee---EC--CCCCCCccceeEECCCCCEEE-EeCCceEEEe
Confidence 22333455666666555 4433344443 33442112111 11 124556789999999998665 5568888887
Q ss_pred ECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEe
Q 006825 484 QVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSF 563 (630)
Q Consensus 484 Dl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL 563 (630)
+...++.-..+. .........+..+.+.+++.+++.+. ++.+.... | .|+.-..+
T Consensus 231 ~~D~G~tW~~~~-~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i~~S~------------D-----------gG~tW~~~ 285 (327)
T 2xbg_A 231 DPDNSENWGELL-SPLRRNSVGFLDLAYRTPNEVWLAGG-AGALLCSQ------------D-----------GGQTWQQD 285 (327)
T ss_dssp ETTEEEEECCCB-CTTSSCCSCEEEEEESSSSCEEEEES-TTCEEEES------------S-----------TTSSCEEC
T ss_pred cCCCCCeeEecc-CCcccCCcceEEEEecCCCEEEEEeC-CCeEEEeC------------C-----------CCcccEEc
Confidence 533233322221 00001223578899998888777764 55442111 1 11111112
Q ss_pred c---cCCCCEEEEEEcCCCeEEEEECCCcEEEEeC
Q 006825 564 Q---GHLDDVLDLSWSKSQHLLSSSMDKTVRLWHL 595 (630)
Q Consensus 564 ~---GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl 595 (630)
. .+...+.+|.|.+++.++.++.+|+|.-++-
T Consensus 286 ~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 286 VDVKKVPSNFYKILFFSPDQGFILGQKGILLRYVT 320 (327)
T ss_dssp GGGTTSSSCCCEEEEEETTEEEEECSTTEEEEECC
T ss_pred CccCCCCCCeEEEEEECCCceEEEcCCceEEEEcC
Confidence 1 2345678888876667778888998877654
No 284
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=95.22 E-value=1.9 Score=45.53 Aligned_cols=195 Identities=14% Similarity=0.159 Sum_probs=112.4
Q ss_pred cCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCe-EEEecC--Cc
Q 006825 355 NKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDV-SFHGQE--RV 431 (630)
Q Consensus 355 S~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~-l~Sgs~--Dg 431 (630)
...+.+. ++|+ +|+.++.+.. +.++.|..-|+- .+ ++.. .+. +++--. +.
T Consensus 47 ~k~~gL~-Vydl-~G~~l~~~~~---g~~nnVD~r~~~-~l-------------~g~~--------~dla~as~R~~~~n 99 (355)
T 3amr_A 47 NKKSGLV-VYSL-DGKMLHSYNT---GKLNNVDIRYDF-PL-------------NGKK--------VDIAAASNRSEGKN 99 (355)
T ss_dssp ETTTEEE-EEET-TSCEEEEECC---SCEEEEEEEEEE-EE-------------TTEE--------EEEEEEEECSTTCC
T ss_pred cCCCCEE-EEcC-CCcEEEEccC---CCcccEEEeccc-cc-------------CCce--------EeEEEEeCCCCCCC
Confidence 3445677 9999 8999988873 456666665521 00 0000 011 233334 57
Q ss_pred EEEEEeC--CCCcccceeee-eEecccCcCEEEEEE--ccC-CC-EEEEEeCCCcEEEEECc---C----Cceeeeeecc
Q 006825 432 RVRQYGK--SCKDLTALYKC-QEIQAHNGSIWSIKF--SLD-GR-YLASAGEDCVIHVWQVV---E----SERKGELLEK 497 (630)
Q Consensus 432 ~VriWd~--~~~el~~~~~v-~tL~gHt~~V~sVaF--SpD-G~-~LASgS~DgtIrVWDl~---t----g~~~~~l~~~ 497 (630)
+|++|++ .++++...... +.+..-...++.+++ +|. ++ +++....++.+..|++. . .+.++++.
T Consensus 100 ~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~-- 177 (355)
T 3amr_A 100 TIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK-- 177 (355)
T ss_dssp EEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE--
T ss_pred eEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec--
Confidence 8999965 34432211000 001011156777888 774 54 68888899999999993 2 23344432
Q ss_pred cccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCC------CCceEEe-ccCC-CC
Q 006825 498 QEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS------DKPICSF-QGHL-DD 569 (630)
Q Consensus 498 ~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdls------gk~l~tL-~GHs-~~ 569 (630)
. ...+..+...+....|..+-.+.-| |. ++.. ++.+..+ .+|- ..
T Consensus 178 --l--gsq~EgcvvDd~~g~Lyv~eEd~GI--w~---------------------~da~p~~~~~~~~v~~~~~g~l~aD 230 (355)
T 3amr_A 178 --M--NSQTEGMAADDEYGRLYIAEEDEAI--WK---------------------FSAEPDGGSNGTVIDRADGRHLTRD 230 (355)
T ss_dssp --C--SSCEEEEEEETTTTEEEEEETTTEE--EE---------------------EECSTTSCSCCEEEEEBSSSSBCSC
T ss_pred --C--CCCcceEEEcCCCCeEEEecccceE--EE---------------------EeCCcCCCCCceEEEEecCCccccC
Confidence 1 2356677788777777777666433 21 2211 2334333 2333 37
Q ss_pred EEEEEEc--CC--CeEEEEE-CCCcEEEEeCC-CCcEEEEEe
Q 006825 570 VLDLSWS--KS--QHLLSSS-MDKTVRLWHLS-SKTCLKIFS 605 (630)
Q Consensus 570 V~sLafS--Pd--~~LaSgS-~DgtVrIWDl~-tg~~l~t~~ 605 (630)
+..|++- ++ +||+.++ .+.+..+||.. +.+.+..|.
T Consensus 231 vEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 231 IEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp EEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred cceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 8888884 44 4777666 67899999997 788888885
No 285
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=94.86 E-value=4.7 Score=42.54 Aligned_cols=180 Identities=6% Similarity=-0.089 Sum_probs=100.1
Q ss_pred ccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeC
Q 006825 359 FDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGK 438 (630)
Q Consensus 359 tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~ 438 (630)
.|+ .-++.+...... . .....+.+|+|.+.+..|. ++-...++|+.++.
T Consensus 93 ~I~-~i~l~~~~~~~~-~-~~~~~~~~l~~d~~~~~ly----------------------------wsD~~~~~I~~~~~ 141 (400)
T 3p5b_L 93 EVR-KMTLDRSEYTSL-I-PNLRNVVALDTEVASNRIY----------------------------WSDLSQRMICSTQL 141 (400)
T ss_dssp EEE-EECTTSCSCEEE-E-CSCSCEEEEEEETTTTEEE----------------------------EEETTTTEEEEEEC
T ss_pred eeE-EEccCCcceeEe-c-cccCcceEEeeeeccCceE----------------------------EEecCCCeEEEEEc
Confidence 344 344544333322 2 3466778889988544332 33344566777776
Q ss_pred CCCcccceeeeeEecccCcCEEEEEEcc-CCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCE
Q 006825 439 SCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTS 517 (630)
Q Consensus 439 ~~~el~~~~~v~tL~gHt~~V~sVaFSp-DG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~ 517 (630)
...... ......+.........|++.+ .+++.++-...+.|.+.++.... ...++ .........|++.|.+.+
T Consensus 142 ~g~~~~-~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~-~~~l~----~~~~~~P~~iavdp~~g~ 215 (400)
T 3p5b_L 142 DRAHGV-SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLF----RENGSKPRAIVVDPVHGF 215 (400)
T ss_dssp -------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCS-EEEEE----ECSSCCEEEEEEETTTTE
T ss_pred ccCCCC-CcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCc-eEEEE----eCCCCCcceEEEecccCe
Confidence 542100 001122333445678999998 55566666677889999986543 33332 223345678999986555
Q ss_pred EEEeeC--CCeeeeecccccccccccccCccccccEEEeCCCCceEEec-cCCCCEEEEEEcCC-CeE-EEEECCCcEEE
Q 006825 518 LSPKHL--DNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ-GHLDDVLDLSWSKS-QHL-LSSSMDKTVRL 592 (630)
Q Consensus 518 lasgs~--Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~-GHs~~V~sLafSPd-~~L-aSgS~DgtVrI 592 (630)
|..... ...| ...++.|.....+. ..-...+.|+|.++ +.| ++=...+.|..
T Consensus 216 ly~td~~~~~~I-----------------------~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~ 272 (400)
T 3p5b_L 216 MYWTDWGTPAKI-----------------------KKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS 272 (400)
T ss_dssp EEEEECSSSCCE-----------------------EEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EEEEeCCCCCEE-----------------------EEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEE
Confidence 544322 1334 44455555544442 23356788999987 544 44456778888
Q ss_pred EeCCCC
Q 006825 593 WHLSSK 598 (630)
Q Consensus 593 WDl~tg 598 (630)
.|+...
T Consensus 273 ~d~dG~ 278 (400)
T 3p5b_L 273 IDVNGG 278 (400)
T ss_dssp EETTSC
T ss_pred EeCCCC
Confidence 888644
No 286
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=94.60 E-value=0.85 Score=48.91 Aligned_cols=131 Identities=8% Similarity=-0.018 Sum_probs=77.4
Q ss_pred cEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeC-CC---cEEEEECcCCcee--eeeecccccCccc
Q 006825 431 VRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE-DC---VIHVWQVVESERK--GELLEKQEDGHLN 504 (630)
Q Consensus 431 g~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~-Dg---tIrVWDl~tg~~~--~~l~~~~~~gh~~ 504 (630)
..|+.++...+.+ ..+.........|+|+++|++|+.+.. .+ ...+|-...+... ..+. ...
T Consensus 159 ~~I~~id~~~~~v------~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~------~~~ 226 (430)
T 3tc9_A 159 HPTRLIDFEKEYV------STVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELT------KGQ 226 (430)
T ss_dssp EEEEEEETTTTEE------EEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEE------ECS
T ss_pred CcEEEEECCCCEE------EEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeeeec------cCC
Confidence 6788898876543 233334556889999999995555543 22 2233333333322 1211 123
Q ss_pred ceEEEEECC-CCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEec--cCCCCEEEEEEcCC-C-
Q 006825 505 MLLLANGSP-EPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ--GHLDDVLDLSWSKS-Q- 579 (630)
Q Consensus 505 ~V~svafSp-dg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~--GHs~~V~sLafSPd-~- 579 (630)
....++++| ++.++++-...+.| ..++..+..+..+. +....-..|+|+|+ +
T Consensus 227 ~p~giavdp~~g~lyv~d~~~~~V-----------------------~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~ 283 (430)
T 3tc9_A 227 NCNGAETHPINGELYFNSWNAGQV-----------------------FRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNY 283 (430)
T ss_dssp SCCCEEECTTTCCEEEEETTTTEE-----------------------EEEETTTTEEEEEEECSSSSCCEEEEECTTSSE
T ss_pred CceEEEEeCCCCEEEEEECCCCEE-----------------------EEEECCCCcEEEEEEcCCCCcceeEEEcCCCCE
Confidence 345678899 67777776666666 44555433331221 11234578999999 6
Q ss_pred eEEEEECCCcEEEEeCC
Q 006825 580 HLLSSSMDKTVRLWHLS 596 (630)
Q Consensus 580 ~LaSgS~DgtVrIWDl~ 596 (630)
++++-...+.|..++..
T Consensus 284 lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 284 AYIVVVNQHYILRSDYD 300 (430)
T ss_dssp EEEEETTTTEEEEEEEE
T ss_pred EEEEECCCCEEEEEeCC
Confidence 55666678899998764
No 287
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=94.58 E-value=0.9 Score=51.19 Aligned_cols=124 Identities=10% Similarity=-0.004 Sum_probs=72.0
Q ss_pred EEEEcC-CCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEe-cccCcCEEEE
Q 006825 385 TVASSV-TGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEI-QAHNGSIWSI 462 (630)
Q Consensus 385 sVAfSp-dG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL-~gHt~~V~sV 462 (630)
++++.+ +|+.++.|+.+.+... +. .. ....+.+||..+++...+. .+ ..+.....++
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~--~~----------~~------~~~~~~~yd~~t~~w~~~~---~~~~~~~~~~~~~ 248 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFG--GS----------PG------GITLTSSWDPSTGIVSDRT---VTVTKHDMFCPGI 248 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTC--SC----------CC------SEEEEEEECTTTCCBCCCE---EEECSCCCSSCEE
T ss_pred eEEEEecCCEEEEEecccccccc--cC----------CC------CeEEEEEEeCCCCcEEeCc---ccCCCCCCccccc
Confidence 467777 8888877765431100 00 00 0114788998887654332 22 2344444567
Q ss_pred EEccCCCEEEEEeC-CCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEee-CC-----Ceeeeeccc
Q 006825 463 KFSLDGRYLASAGE-DCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKH-LD-----NHLEKKRRG 533 (630)
Q Consensus 463 aFSpDG~~LASgS~-DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs-~D-----g~I~i~~~~ 533 (630)
++..+|++++.||. +..+.+||..+..-... . ... ....-..++..+++++++.|+ .+ ..+.+++..
T Consensus 249 ~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~-~--~~~-~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~ 322 (656)
T 1k3i_A 249 SMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPG-P--DMQ-VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPS 322 (656)
T ss_dssp EECTTSCEEEECSSSTTCEEEEEGGGTEEEEC-C--CCS-SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred cCCCCCCEEEeCCCCCCceEEecCcCCceeEC-C--CCC-ccccccceEEecCCeEEEEeCcccCCcccccceEeCCC
Confidence 88899999999984 46899999987643221 0 011 111123456667999999988 34 245555543
No 288
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=94.52 E-value=8 Score=43.62 Aligned_cols=190 Identities=7% Similarity=-0.037 Sum_probs=104.6
Q ss_pred cccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCc
Q 006825 363 NNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKD 442 (630)
Q Consensus 363 vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~e 442 (630)
.=++.+......+.....+...+|+|.+.+..+ .++-...++|+.++.....
T Consensus 19 ~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~l----------------------------ywtD~~~~~I~r~~~~g~~ 70 (628)
T 4a0p_A 19 RISLETNNNNVAIPLTGVKEASALDFDVTDNRI----------------------------YWTDISLKTISRAFMNGSA 70 (628)
T ss_dssp EEESSCTTCEEECCCCSCSCEEEEEEETTTTEE----------------------------EEEETTTTEEEEEETTSCS
T ss_pred EEECCCCCcceEEEcCCCCceEEEEEECCCCEE----------------------------EEEECCCCeEEEEECCCCC
Confidence 334544433333332345667788888855433 2444456778888776543
Q ss_pred ccceeeeeEecccCcCEEEEEEccCCC-EEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCC-CCEEEE
Q 006825 443 LTALYKCQEIQAHNGSIWSIKFSLDGR-YLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE-PTSLSP 520 (630)
Q Consensus 443 l~~~~~v~tL~gHt~~V~sVaFSpDG~-~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpd-g~~las 520 (630)
.. ..+..-......|++.+.+. +.++-...+.|.+.++.... ...+. .........+++.|. |.++.+
T Consensus 71 ~~-----~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~-~~~l~----~~~l~~P~~iavdp~~G~lY~t 140 (628)
T 4a0p_A 71 LE-----HVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQH-RQVLV----WKDLDSPRALALDPAEGFMYWT 140 (628)
T ss_dssp CE-----EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTT-CEEEE----CSSCCCEEEEEEETTTTEEEEE
T ss_pred cE-----EEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCc-EEEEE----eCCCCCcccEEEccCCCeEEEe
Confidence 21 11222224567899987544 55555667889999986443 33332 223345678999985 444444
Q ss_pred eeC-CCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeE-EEEECCCcEEEEeCCC
Q 006825 521 KHL-DNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHL-LSSSMDKTVRLWHLSS 597 (630)
Q Consensus 521 gs~-Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~L-aSgS~DgtVrIWDl~t 597 (630)
-.. ...| ...++.|..+..+...-.....|++.++ +.| ++=...+.|...|+..
T Consensus 141 D~g~~~~I-----------------------~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG 197 (628)
T 4a0p_A 141 EWGGKPKI-----------------------DRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLG 197 (628)
T ss_dssp ECSSSCEE-----------------------EEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCCCCCEE-----------------------EEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCC
Confidence 311 2333 3344455555444444456788888886 444 4445667888888765
Q ss_pred CcEEEEEe-cCCceEEEE
Q 006825 598 KTCLKIFS-HSDYDISLV 614 (630)
Q Consensus 598 g~~l~t~~-H~~~V~sVa 614 (630)
... ..+. .......|+
T Consensus 198 ~~~-~v~~~~l~~P~gla 214 (628)
T 4a0p_A 198 LNR-EVIADDLPHPFGLT 214 (628)
T ss_dssp CSC-EEEEECCSCEEEEE
T ss_pred Cce-EEeeccCCCceEEE
Confidence 433 2333 333344555
No 289
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=94.32 E-value=8.8 Score=43.29 Aligned_cols=147 Identities=10% Similarity=-0.048 Sum_probs=84.3
Q ss_pred EEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccC-CCEEEEE-eCCCcEEEEECcCCceeeeeecccccCc
Q 006825 425 FHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLD-GRYLASA-GEDCVIHVWQVVESERKGELLEKQEDGH 502 (630)
Q Consensus 425 ~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpD-G~~LASg-S~DgtIrVWDl~tg~~~~~l~~~~~~gh 502 (630)
++-...+.|.+.++...... ..+...-..-..|++.|. |.+++|- +..+.|...++.... ...+. ..
T Consensus 96 ~tD~~~~~I~v~~~dG~~~~-----~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~-~~~l~-----~~ 164 (628)
T 4a0p_A 96 WADTGTNRIEVSKLDGQHRQ-----VLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE-RTTLV-----PN 164 (628)
T ss_dssp EEETTTTEEEEEETTSTTCE-----EEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEEEE-----CS
T ss_pred EEECCCCEEEEEecCCCcEE-----EEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc-eEEEE-----CC
Confidence 44455667888877654211 112233445789999985 5444443 234667777775333 33331 13
Q ss_pred ccceEEEEECCCCCEEEEe-eCCCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCCCeE
Q 006825 503 LNMLLLANGSPEPTSLSPK-HLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHL 581 (630)
Q Consensus 503 ~~~V~svafSpdg~~lasg-s~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd~~L 581 (630)
......|++.+++..|..+ .....| ..+++.|.....+.........|++..+.++
T Consensus 165 ~~~P~GlalD~~~~~LY~aD~~~~~I-----------------------~~~d~dG~~~~v~~~~l~~P~glav~~~~ly 221 (628)
T 4a0p_A 165 VGRANGLTIDYAKRRLYWTDLDTNLI-----------------------ESSNMLGLNREVIADDLPHPFGLTQYQDYIY 221 (628)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEE-----------------------EEEETTSCSCEEEEECCSCEEEEEEETTEEE
T ss_pred CCCcceEEEccccCEEEEEECCCCEE-----------------------EEEcCCCCceEEeeccCCCceEEEEECCEEE
Confidence 3556789999875555544 344455 4445544333344434444567777665556
Q ss_pred EEEECCCcEEEEeCCCCcEEEEEe
Q 006825 582 LSSSMDKTVRLWHLSSKTCLKIFS 605 (630)
Q Consensus 582 aSgS~DgtVrIWDl~tg~~l~t~~ 605 (630)
++-...+.|...|..+|+....+.
T Consensus 222 ~tD~~~~~I~~~dk~tg~~~~~l~ 245 (628)
T 4a0p_A 222 WTDWSRRSIERANKTSGQNRTIIQ 245 (628)
T ss_dssp EEETTTTEEEEEETTTCCSCEEEE
T ss_pred EecCCCCEEEEEECCCCCceEEEe
Confidence 666667888888877776544443
No 290
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=93.93 E-value=5.7 Score=41.72 Aligned_cols=182 Identities=12% Similarity=0.035 Sum_probs=95.0
Q ss_pred cCCcEEEEEeCCCCcccceeeeeEecc-----cCcCEEEEEEcc--CCC--EEEEEeC--CCcEEEEECcCCceeeeeec
Q 006825 428 QERVRVRQYGKSCKDLTALYKCQEIQA-----HNGSIWSIKFSL--DGR--YLASAGE--DCVIHVWQVVESERKGELLE 496 (630)
Q Consensus 428 s~Dg~VriWd~~~~el~~~~~v~tL~g-----Ht~~V~sVaFSp--DG~--~LASgS~--DgtIrVWDl~tg~~~~~l~~ 496 (630)
..+|.|.++|........ ..+ .+.+ ..-....|.+.+ +|+ +++.-.. +.+|.||++........+..
T Consensus 80 ~~~G~I~~~d~~~~~~~~-~~l-~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~ 157 (355)
T 3sre_A 80 DKSGKILLMDLNEKEPAV-SEL-EIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLK 157 (355)
T ss_dssp --CCEEEEEETTSSSCCE-EEC-EEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEE
T ss_pred CCCCeEEEEecCCCCCce-EEE-EccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEe
Confidence 368899999987432221 111 2222 334566777766 454 3343332 57889998876543333322
Q ss_pred ccccCcccceEEEEECCCCCEEEEeeC---CCeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEE
Q 006825 497 KQEDGHLNMLLLANGSPEPTSLSPKHL---DNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDL 573 (630)
Q Consensus 497 ~~~~gh~~~V~svafSpdg~~lasgs~---Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sL 573 (630)
............+.+.++|.++++... |.....+.. .. ......+|.+....+..+...-..-+.|
T Consensus 158 ~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~--------~~---~~~~g~vyr~d~~~~~~~~~~l~~pNGi 226 (355)
T 3sre_A 158 TIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEM--------HL---GLAWSFVTYYSPNDVRVVAEGFDFANGI 226 (355)
T ss_dssp EECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHH--------HT---TCCCEEEEEECTTCCEEEEEEESSEEEE
T ss_pred ccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchh--------hc---cCCccEEEEEECCeEEEeecCCcccCcc
Confidence 211222345778888899988776531 100000000 00 0011245555322333333333456899
Q ss_pred EEcCC-CeE-EEEECCCcEEEEeCCC-CcE--EEEEecCCceEEEE-cC-CCcEEE
Q 006825 574 SWSKS-QHL-LSSSMDKTVRLWHLSS-KTC--LKIFSHSDYDISLV-DR-LMLRFA 622 (630)
Q Consensus 574 afSPd-~~L-aSgS~DgtVrIWDl~t-g~~--l~t~~H~~~V~sVa-s~-~~~~lA 622 (630)
+|+|| ++| ++-+..+.|..|++.. ++. .+.|........++ +. ++...+
T Consensus 227 a~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwv 282 (355)
T 3sre_A 227 NISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWV 282 (355)
T ss_dssp EECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEE
T ss_pred eECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEE
Confidence 99999 555 4556788999999863 432 23443345566676 65 355444
No 291
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=93.72 E-value=8.5 Score=40.99 Aligned_cols=152 Identities=6% Similarity=-0.044 Sum_probs=82.6
Q ss_pred eeEEEeec----ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeE-EeecCCCCCccccCCcceEEE
Q 006825 342 VQELMRRQ----NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKE-RRSSDERDTSSEKGGRRSSSA 416 (630)
Q Consensus 342 V~~Lafs~----~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~l-asgS~D~dt~s~~gh~~~Vsa 416 (630)
...|++.| .|........|+ .+|..++.... +. ........|+|+++|++| ++.....
T Consensus 139 P~~lavdp~~~g~Lyv~d~~~~I~-~id~~~~~v~~-~~-~~~~~P~~ia~d~~G~~lyvad~~~~-------------- 201 (430)
T 3tc9_A 139 AVWLSFDPKNHNHLYLVGEQHPTR-LIDFEKEYVST-VY-SGLSKVRTICWTHEADSMIITNDQNN-------------- 201 (430)
T ss_dssp CCEEEEETTEEEEEEEEEBTEEEE-EEETTTTEEEE-EE-CCCSCEEEEEECTTSSEEEEEECCSC--------------
T ss_pred CCEEEECCCCCCeEEEEeCCCcEE-EEECCCCEEEE-Ee-cCCCCcceEEEeCCCCEEEEEeCCCC--------------
Confidence 35566663 232222226677 77877655433 33 345667889999999844 3211110
Q ss_pred eecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc-CCCEEEEEeCCCcEEEEECcCCceeeeee
Q 006825 417 TDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVESERKGELL 495 (630)
Q Consensus 417 ~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp-DG~~LASgS~DgtIrVWDl~tg~~~~~l~ 495 (630)
.....+.+++.. +.+... ..+.. ......++++| +|.++++-...+.|..++...+......
T Consensus 202 -----------~~~~~v~~~~~~-g~~~~~---~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~- 264 (430)
T 3tc9_A 202 -----------NDRPNNYILTRE-SGFKVI---TELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLF- 264 (430)
T ss_dssp -----------TTSEEEEEEEGG-GTSCSE---EEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEE-
T ss_pred -----------cccceEEEEeCC-Cceeee---eeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEE-
Confidence 001122223322 111111 11221 23356788999 7887777777889999998765532211
Q ss_pred cccccCcccceEEEEECCCCC-EEEEeeCCCeeeee
Q 006825 496 EKQEDGHLNMLLLANGSPEPT-SLSPKHLDNHLEKK 530 (630)
Q Consensus 496 ~~~~~gh~~~V~svafSpdg~-~lasgs~Dg~I~i~ 530 (630)
..+.......++|+|+++ ++++......|..+
T Consensus 265 ---~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~ 297 (430)
T 3tc9_A 265 ---TIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRS 297 (430)
T ss_dssp ---ECSSSSCCEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred ---EcCCCCcceeEEEcCCCCEEEEEECCCCEEEEE
Confidence 112224467899999999 45555555666443
No 292
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=93.48 E-value=7.7 Score=43.62 Aligned_cols=147 Identities=8% Similarity=-0.070 Sum_probs=76.6
Q ss_pred EEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeC--CCcEEEEECcCCceeeeeecccccCc
Q 006825 425 FHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE--DCVIHVWQVVESERKGELLEKQEDGH 502 (630)
Q Consensus 425 ~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~--DgtIrVWDl~tg~~~~~l~~~~~~gh 502 (630)
++-...+.|.+.+....... ..+.+.-..-..|++.|.+.+|+-... .+.|...++. |.....+. ...
T Consensus 100 ~~d~~~~~I~v~~~dG~~~~-----~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d-G~~~~~l~----~~~ 169 (619)
T 3s94_A 100 WTDSETNRIEVSNLDGSLRK-----VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIII----NSE 169 (619)
T ss_dssp EEETTTTEEEEEETTSCSCE-----EEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEE----CSS
T ss_pred EEeCCCCEEEEEECCCCCEE-----EEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECC-CCceEEEE----eCC
Confidence 44455677888887654211 112234455778999996544444332 3556655654 33333332 223
Q ss_pred ccceEEEEECCCCCEEEEe-eCCCeeeeecccccccccccccCccccccEEEeCCCCceEEec-cCCCCEEEEEEcCCCe
Q 006825 503 LNMLLLANGSPEPTSLSPK-HLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ-GHLDDVLDLSWSKSQH 580 (630)
Q Consensus 503 ~~~V~svafSpdg~~lasg-s~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~-GHs~~V~sLafSPd~~ 580 (630)
......+++.++...|..+ .....| ..+++.|.....+. +.......|++..+.+
T Consensus 170 ~~~P~Glald~~~~~LY~aD~~~~~I-----------------------~~~~~dG~~~~~~~~~~~~~P~gi~~~~~~l 226 (619)
T 3s94_A 170 IYWPNGLTLDYEEQKLYWADAKLNFI-----------------------HKSNLDGTNRQAVVKGSLPHPFALTLFEDIL 226 (619)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTCCE-----------------------EEESSSCCEEC---------CCCEEESSSEE
T ss_pred CCCCcEEEEEccCCEEEEEeCCCCeE-----------------------EEecCCCCccEEEEeCCCCCceEEEEeCCEE
Confidence 3456789999875555444 333444 33344443322221 1112224566666555
Q ss_pred EEEEECCCcEEEEeCCCCcEEEEE
Q 006825 581 LLSSSMDKTVRLWHLSSKTCLKIF 604 (630)
Q Consensus 581 LaSgS~DgtVrIWDl~tg~~l~t~ 604 (630)
+++-...+.|...|..+|+.+..+
T Consensus 227 y~td~~~~~V~~~d~~tg~~~~~i 250 (619)
T 3s94_A 227 YWTDWSTHSILACNKYTGEGLREI 250 (619)
T ss_dssp EEECTTTCSEEEEESSSCCCCEEC
T ss_pred EEecCCCCEEEEEECCCCcccEEE
Confidence 556666778888888777654444
No 293
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=93.44 E-value=2.8 Score=43.81 Aligned_cols=153 Identities=11% Similarity=0.121 Sum_probs=90.3
Q ss_pred EEecCCcEEEEEeCCCCcccceeeeeEecc----cC--cCEEEEEE---ccCCCEEEEEe-------------CCCcEEE
Q 006825 425 FHGQERVRVRQYGKSCKDLTALYKCQEIQA----HN--GSIWSIKF---SLDGRYLASAG-------------EDCVIHV 482 (630)
Q Consensus 425 ~Sgs~Dg~VriWd~~~~el~~~~~v~tL~g----Ht--~~V~sVaF---SpDG~~LASgS-------------~DgtIrV 482 (630)
++.-..++|..|+...+... .+ .+.+ .. ..+..|.| .|+|++++..- .+..|..
T Consensus 29 vs~l~~g~V~~~~~~~~~~~---~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~ 104 (334)
T 2p9w_A 29 QSNLYKGRIEVYNPKTQSHF---NV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHS 104 (334)
T ss_dssp EEETTTTEEEEECTTTCCEE---EE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEE
T ss_pred EEeccCCEEEEEcCCCCeEE---EE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEE
Confidence 44446789999988644221 11 2322 11 14689999 68888888543 2678999
Q ss_pred EECc---CCceeeeeecc-cccC-------cccceEEEEECCCCCEEEEeeCC-CeeeeecccccccccccccCcccccc
Q 006825 483 WQVV---ESERKGELLEK-QEDG-------HLNMLLLANGSPEPTSLSPKHLD-NHLEKKRRGRSINRKSLSLDHMVVPE 550 (630)
Q Consensus 483 WDl~---tg~~~~~l~~~-~~~g-------h~~~V~svafSpdg~~lasgs~D-g~I~i~~~~~~~~~~s~s~d~~i~~~ 550 (630)
+|+. +++.+...-.. ...+ -......++..++|+..++++.. +.|.. +++++.. .
T Consensus 105 ~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~r-----------V~pdG~~--~ 171 (334)
T 2p9w_A 105 FNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIAR-----------VSADGKT--V 171 (334)
T ss_dssp EESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEE-----------ECTTSCC--E
T ss_pred EcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEE-----------EeCCCCE--E
Confidence 9998 77665443210 0011 12347799999999999988776 65521 1111110 0
Q ss_pred EEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCCCC
Q 006825 551 TVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK 598 (630)
Q Consensus 551 ~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg 598 (630)
..|.+... .....-..+.|+++|+ .+|+.....+.+..+|+.+.
T Consensus 172 ~~~~~~~~----~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 172 STFAWESG----NGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp EEEEECCC----CSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred eeeeecCC----CcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence 22322110 0111223578999999 67776655999999998753
No 294
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=92.51 E-value=9.4 Score=38.12 Aligned_cols=191 Identities=14% Similarity=0.068 Sum_probs=110.3
Q ss_pred CccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeE--eccc
Q 006825 378 SWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQE--IQAH 455 (630)
Q Consensus 378 gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~t--L~gH 455 (630)
|=.+.+-.+++.|++..|.. ....++.|...|.. +++ ++. +.+.
T Consensus 24 g~~~~lSGla~~~~~~~L~a----------------------------V~d~~~~I~~ld~~-g~v-----~~~i~l~g~ 69 (255)
T 3qqz_A 24 GITNNISSLTWSAQSNTLFS----------------------------TINKPAAIVEMTTN-GDL-----IRTIPLDFV 69 (255)
T ss_dssp TCCSCEEEEEEETTTTEEEE----------------------------EEETTEEEEEEETT-CCE-----EEEEECSSC
T ss_pred CcccCcceeEEeCCCCEEEE----------------------------EECCCCeEEEEeCC-CCE-----EEEEecCCC
Confidence 55567888888887654432 23335667777776 332 222 2332
Q ss_pred CcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecc--c--ccCcccceEEEEECCCCCEEEEeeCCCeeeeec
Q 006825 456 NGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEK--Q--EDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKR 531 (630)
Q Consensus 456 t~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~--~--~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~ 531 (630)
.-.-.|++.+++.++++.-.++.+.++++.....+..+... . .......+-.+++.|++..|.++.......++.
T Consensus 70 -~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~ 148 (255)
T 3qqz_A 70 -KDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYK 148 (255)
T ss_dssp -SSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEE
T ss_pred -CChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEE
Confidence 45778899999988777656778888888654432211101 1 112344578999999986666654443332222
Q ss_pred ccccccccccccCccccccEEEeCCCCceEEe-------ccCCCCEEEEEEcCC--CeEEEEECCCcEEEEeCCCCcEEE
Q 006825 532 RGRSINRKSLSLDHMVVPETVFALSDKPICSF-------QGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLK 602 (630)
Q Consensus 532 ~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL-------~GHs~~V~sLafSPd--~~LaSgS~DgtVrIWDl~tg~~l~ 602 (630)
... . ..+..+..+ ..+...+.+|+|.|. .+++.....+.|-++|.. |+.+.
T Consensus 149 ~~g-~------------------~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~ 208 (255)
T 3qqz_A 149 VNG-L------------------LSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIG 208 (255)
T ss_dssp EES-T------------------TCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEE
T ss_pred Ecc-c------------------ccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEE
Confidence 110 0 000111111 012345789999998 455666677889999965 66777
Q ss_pred EEe-cC---------CceEEEE-cCCCcEEEE
Q 006825 603 IFS-HS---------DYDISLV-DRLMLRFAY 623 (630)
Q Consensus 603 t~~-H~---------~~V~sVa-s~~~~~lAs 623 (630)
.+. .. ..--.|+ ++.+..+.+
T Consensus 209 ~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv 240 (255)
T 3qqz_A 209 EMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV 240 (255)
T ss_dssp EEECSTTGGGCSSCCCSEEEEEECTTCCEEEE
T ss_pred EEEcCCccCCcccccCCCCeeEECCCCCEEEE
Confidence 665 21 2456777 666665554
No 295
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=92.31 E-value=12 Score=38.69 Aligned_cols=65 Identities=6% Similarity=-0.063 Sum_probs=36.4
Q ss_pred ceEEeccCCCCEEEEEEcCCCeEEEEECCCcEEEEeCCCCcE------EEEE-ecCCceEEEE-cCCCcEEEEe
Q 006825 559 PICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTC------LKIF-SHSDYDISLV-DRLMLRFAYG 624 (630)
Q Consensus 559 ~l~tL~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~------l~t~-~H~~~V~sVa-s~~~~~lAsg 624 (630)
++..+. +......++|....++++.-..+.|...++..... ...+ .....+..|+ .|++..+.+.
T Consensus 260 p~~~~~-~~~ap~G~~~~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~ 332 (352)
T 2ism_A 260 PLYFWP-QGFPPGNLAFFRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTT 332 (352)
T ss_dssp CSEECT-TCCCEEEEEEETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEE
T ss_pred CeEecC-CCCCCcceEEECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEE
Confidence 444443 33356778884335555555566777776654321 1222 2346788888 7777665554
No 296
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=92.13 E-value=0.37 Score=55.32 Aligned_cols=112 Identities=6% Similarity=-0.083 Sum_probs=61.2
Q ss_pred CEEEEEEcc-CCCEEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCE-EEEeeCC-Ceeeeecccc
Q 006825 458 SIWSIKFSL-DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTS-LSPKHLD-NHLEKKRRGR 534 (630)
Q Consensus 458 ~V~sVaFSp-DG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~-lasgs~D-g~I~i~~~~~ 534 (630)
....|++.+ .++++++-...+.|.+.++.... ...++ .........|++.|.+.+ +++.... +.|
T Consensus 454 ~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~-~~~l~----~~~~~~P~giavDp~~g~ly~td~~~~~~I------- 521 (699)
T 1n7d_A 454 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLF----REQGSKPRAIVVDPVHGFMYWTDWGTPAKI------- 521 (699)
T ss_dssp -CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC-EEEEC----CCSSCCCCCEECCSSSSCCEECCCSSSCCE-------
T ss_pred CcceEEEEeeCCcEEEEeccCCeEEEEecCCCc-eEEEE----eCCCCCcceEEEccCCCcEEEcccCCCCeE-------
Confidence 345688885 45555655667889999986443 33332 111233456788886443 3333221 333
Q ss_pred cccccccccCccccccEEEeCCCCceEEec-cCCCCEEEEEEcCC--CeEEEEECCCcEEEEeCCC
Q 006825 535 SINRKSLSLDHMVVPETVFALSDKPICSFQ-GHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSS 597 (630)
Q Consensus 535 ~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~-GHs~~V~sLafSPd--~~LaSgS~DgtVrIWDl~t 597 (630)
.++++.|.....+. ..-...+.|+|+|+ .++++-+..+.|..+++..
T Consensus 522 ----------------~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG 571 (699)
T 1n7d_A 522 ----------------KKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 571 (699)
T ss_dssp ----------------EBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSS
T ss_pred ----------------EEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCC
Confidence 22233343333332 12234567889886 4455666677888888864
No 297
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=92.05 E-value=2.4 Score=45.91 Aligned_cols=151 Identities=14% Similarity=0.036 Sum_probs=85.1
Q ss_pred CccEecccCCCCceeEEecCCc---cCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEE-e-cCCcE
Q 006825 358 SFDLNNNGSSGGGMKSKKKGSW---FKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFH-G-QERVR 432 (630)
Q Consensus 358 ~tvr~vWD~~tG~~~~~lk~gH---~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~S-g-s~Dg~ 432 (630)
+.+| .-++..+..-+.++..+ ...|..+..+|+|.+||-.+ .|.-.|..+......... + ..-..
T Consensus 41 n~iR-~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g---------~~~V~Vv~LP~~~~~~~~~~~~~~~q 110 (452)
T 3pbp_A 41 NIIR-WYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN---------DNEIFVMEVPWGYSNVEDVSIQDAFQ 110 (452)
T ss_dssp TEEE-EEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC---------SSEEEEEECCTTCSCCCCHHHHHTTE
T ss_pred CEEE-EEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec---------CCeEEEEEecCccccCcccccccccc
Confidence 5566 44554333444444332 33577899999999998532 222333333322111110 0 01123
Q ss_pred EEEEeCCCCcccceeeeeEecccCcCEEEEEEcc---CCCEEEEEeCCCcEEEEECcCCceeeeeecc-----cccCccc
Q 006825 433 VRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL---DGRYLASAGEDCVIHVWQVVESERKGELLEK-----QEDGHLN 504 (630)
Q Consensus 433 VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp---DG~~LASgS~DgtIrVWDl~tg~~~~~l~~~-----~~~gh~~ 504 (630)
++.|.+..-+ ......|..+.|+| .+..|++--.|++||+||+.........+.. .......
T Consensus 111 ~~ty~l~~~~----------~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ 180 (452)
T 3pbp_A 111 IFHYSIDEEE----------VGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVN 180 (452)
T ss_dssp EEEEEGGGCC------------CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCC
T ss_pred eeEEEcCCcc----------cCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccc
Confidence 4455442110 11467899999999 4568999999999999999863321111110 1123336
Q ss_pred ceEEEEECCCCCEEEEee--CCCeee
Q 006825 505 MLLLANGSPEPTSLSPKH--LDNHLE 528 (630)
Q Consensus 505 ~V~svafSpdg~~lasgs--~Dg~I~ 528 (630)
.|.+++|..++-.|...+ ..|.|.
T Consensus 181 ev~S~~Fg~~~lTLYvl~~t~~GDIY 206 (452)
T 3pbp_A 181 DITDLEFSKDGLTLYCLNTTEGGDIF 206 (452)
T ss_dssp CEEEEEECTTSSCEEEEECTTSCEEE
T ss_pred eEEEEEEcCCCcEEEEEecCCCCCEE
Confidence 688999999887777644 667653
No 298
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=92.01 E-value=4.7 Score=43.16 Aligned_cols=132 Identities=6% Similarity=0.014 Sum_probs=73.2
Q ss_pred cEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCC---Cc-EEEEECcCCceeeeeecccccCcccce
Q 006825 431 VRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED---CV-IHVWQVVESERKGELLEKQEDGHLNML 506 (630)
Q Consensus 431 g~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~D---gt-IrVWDl~tg~~~~~l~~~~~~gh~~~V 506 (630)
..|+.++...+. +.++.+.......|+|+++|+++++-... .. +...+...+...... .......
T Consensus 162 ~~I~~id~~~g~------v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~-----~~~~~~P 230 (433)
T 4hw6_A 162 DAFRHVDFVNQY------VDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLS-----LCNARGA 230 (433)
T ss_dssp SCEEEEETTTTE------EEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEE-----EEECSSB
T ss_pred CCEEEEECCCCE------EEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeecccc-----ccccCCC
Confidence 678888886664 23344455568999999999955554321 22 222222211110011 0112334
Q ss_pred EEEEECC-CCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCC-CCceEEec--cCCCCEEEEEEcCC-C-e
Q 006825 507 LLANGSP-EPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS-DKPICSFQ--GHLDDVLDLSWSKS-Q-H 580 (630)
Q Consensus 507 ~svafSp-dg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdls-gk~l~tL~--GHs~~V~sLafSPd-~-~ 580 (630)
..++++| ++.++++...++.| ..++.. +..+..+. +....-..|+|+|+ + +
T Consensus 231 ~giavd~~~G~lyv~d~~~~~V-----------------------~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~L 287 (433)
T 4hw6_A 231 KTCAVHPQNGKIYYTRYHHAMI-----------------------SSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWA 287 (433)
T ss_dssp CCCEECTTTCCEEECBTTCSEE-----------------------EEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEE
T ss_pred CEEEEeCCCCeEEEEECCCCEE-----------------------EEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEE
Confidence 4677888 67777776666666 344442 33312221 11222346999999 6 5
Q ss_pred EEEEECCCcEEEEeCC
Q 006825 581 LLSSSMDKTVRLWHLS 596 (630)
Q Consensus 581 LaSgS~DgtVrIWDl~ 596 (630)
+++-...+.|+.++..
T Consensus 288 Yvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 288 YIIYNGKHCIYRVDYN 303 (433)
T ss_dssp EEEETTTTEEEEEEBC
T ss_pred EEEeCCCCEEEEEeCC
Confidence 5666678899998764
No 299
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=92.00 E-value=7.7 Score=40.58 Aligned_cols=120 Identities=13% Similarity=0.027 Sum_probs=63.6
Q ss_pred CccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeee-eEecccC
Q 006825 378 SWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKC-QEIQAHN 456 (630)
Q Consensus 378 gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v-~tL~gHt 456 (630)
.-+..-+.++|.|||.++++- -..++|++++...+.......+ ..+....
T Consensus 29 ~gL~~P~~ia~~pdG~llVte-----------------------------r~~G~I~~v~~~~g~~~~v~~~~~v~~~g~ 79 (347)
T 3das_A 29 TGLNSPWGLAPLPGGDLLVSS-----------------------------RDEATITRVDAKTGRKTELGEVPGVSPSGE 79 (347)
T ss_dssp CCCSSEEEEEECTTSCEEEEE-----------------------------TTTCEEEEECTTTCCEEEEEECTTCCCBTT
T ss_pred cCCCCceEEEEcCCCcEEEEE-----------------------------ecCCEEEEEECCCCcEeeecccCceeecCC
Confidence 445566789999998766532 1256677776543322111000 0112335
Q ss_pred cCEEEEEEccC----CCEEEEE--eCCCcEEEEECcCCc-------eeeeeecccccCcccceEEEEECCCCCEEEEeeC
Q 006825 457 GSIWSIKFSLD----GRYLASA--GEDCVIHVWQVVESE-------RKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHL 523 (630)
Q Consensus 457 ~~V~sVaFSpD----G~~LASg--S~DgtIrVWDl~tg~-------~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~ 523 (630)
+....|+|+|+ +.+.++- ..+..|.-|.+..+. ....++.....+.......|+|.|||.++++.+.
T Consensus 80 ~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd 159 (347)
T 3das_A 80 GGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGE 159 (347)
T ss_dssp BSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBC
T ss_pred CCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECC
Confidence 66899999995 5444432 234455556654421 1122221111122223457999999998888655
Q ss_pred CCe
Q 006825 524 DNH 526 (630)
Q Consensus 524 Dg~ 526 (630)
.+.
T Consensus 160 ~~~ 162 (347)
T 3das_A 160 SGD 162 (347)
T ss_dssp TTC
T ss_pred CCC
Confidence 443
No 300
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=91.99 E-value=13 Score=39.94 Aligned_cols=70 Identities=11% Similarity=0.026 Sum_probs=38.4
Q ss_pred CcCEEEEEEccC----CCEEEEEeC------------CCcEEEEECcCC--c--eeeeeecccccCcccceEEEEECCCC
Q 006825 456 NGSIWSIKFSLD----GRYLASAGE------------DCVIHVWQVVES--E--RKGELLEKQEDGHLNMLLLANGSPEP 515 (630)
Q Consensus 456 t~~V~sVaFSpD----G~~LASgS~------------DgtIrVWDl~tg--~--~~~~l~~~~~~gh~~~V~svafSpdg 515 (630)
.+....|+|+|| +.+.++-+. ...|.-|++..+ . ....++.............++|.|||
T Consensus 76 ~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG 155 (454)
T 1cru_A 76 QNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQ 155 (454)
T ss_dssp SCSEEEEEECTTTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTS
T ss_pred CCceeEEEECCCcCcCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCC
Confidence 456789999994 444444332 124555554322 1 11222211112222346889999999
Q ss_pred CEEEEeeCCC
Q 006825 516 TSLSPKHLDN 525 (630)
Q Consensus 516 ~~lasgs~Dg 525 (630)
.++++.+..+
T Consensus 156 ~Lyv~~Gd~~ 165 (454)
T 1cru_A 156 KIYYTIGDQG 165 (454)
T ss_dssp CEEEEECCTT
T ss_pred eEEEEECCCC
Confidence 9888765443
No 301
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=91.89 E-value=5.1 Score=41.61 Aligned_cols=69 Identities=6% Similarity=-0.087 Sum_probs=38.0
Q ss_pred CcCEEEEEEccC----CCEEEEEeC---C----CcEEEEECcCC--ce--eeeeecccccCcccceEEEEECCCCCEEEE
Q 006825 456 NGSIWSIKFSLD----GRYLASAGE---D----CVIHVWQVVES--ER--KGELLEKQEDGHLNMLLLANGSPEPTSLSP 520 (630)
Q Consensus 456 t~~V~sVaFSpD----G~~LASgS~---D----gtIrVWDl~tg--~~--~~~l~~~~~~gh~~~V~svafSpdg~~las 520 (630)
......|+|+|+ +.+.++-.. + ..|..|++... .. ...++.....+.......++|.|||.++++
T Consensus 72 ~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt 151 (354)
T 3a9g_A 72 EAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYIT 151 (354)
T ss_dssp TCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEE
T ss_pred CCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEE
Confidence 346789999997 544444332 3 56777776543 11 122211111111122357899999998887
Q ss_pred eeCC
Q 006825 521 KHLD 524 (630)
Q Consensus 521 gs~D 524 (630)
.+..
T Consensus 152 ~G~~ 155 (354)
T 3a9g_A 152 TGDA 155 (354)
T ss_dssp CCCT
T ss_pred ECCC
Confidence 5443
No 302
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=91.65 E-value=17 Score=40.84 Aligned_cols=179 Identities=8% Similarity=-0.083 Sum_probs=93.2
Q ss_pred CccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEecCCcEEEEEe
Q 006825 358 SFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYG 437 (630)
Q Consensus 358 ~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sgs~Dg~VriWd 437 (630)
..|+ .-++.......++...-.+...+|+|.+.+..+. ++=....+|..++
T Consensus 18 ~~I~-~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly----------------------------~sD~~~~~I~r~~ 68 (619)
T 3s94_A 18 RDLR-LVDATNGKENATIVVGGLEDAAAVDFVFSHGLIY----------------------------WSDVSEEAIKRTE 68 (619)
T ss_dssp SBEE-EECCC---------CBCCSCEEEEEEETTTTEEE----------------------------EEETTTTEEEEEE
T ss_pred ccEE-EEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEE----------------------------EEECCCCeEEEEE
Confidence 4455 4455433212222224455677888888554332 2333345677776
Q ss_pred CCCCcccceeeeeEecccCcCEEEEEEccCCC-EEEEEeCCCcEEEEECcCCceeeeeecccccCcccceEEEEECCCCC
Q 006825 438 KSCKDLTALYKCQEIQAHNGSIWSIKFSLDGR-YLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPT 516 (630)
Q Consensus 438 ~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~-~LASgS~DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~ 516 (630)
...... ....+..-......|++.+.++ +.++-...+.|.+.++.... ...+. .........|++.|...
T Consensus 69 ~~g~~~----~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~-~~~l~----~~~l~~P~~Iavdp~~g 139 (619)
T 3s94_A 69 FNKTES----VQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL-RKVLF----WQELDQPRAIALDPSSG 139 (619)
T ss_dssp C---------CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEE----CSSCSCCCCEEEETTTT
T ss_pred ccCCCc----eEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCC-EEEEE----eCCCCCCceEEEecCCC
Confidence 654311 0112233335688999999554 55555677899999986433 33332 22334456788888644
Q ss_pred EEEEeeC--CCeeeeecccccccccccccCccccccEEEeCCCCceEEec-cCCCCEEEEEEcCC-CeE-EEEECCCcEE
Q 006825 517 SLSPKHL--DNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ-GHLDDVLDLSWSKS-QHL-LSSSMDKTVR 591 (630)
Q Consensus 517 ~lasgs~--Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~-GHs~~V~sLafSPd-~~L-aSgS~DgtVr 591 (630)
.|..... ...| ...++.|.....+. ..-...+.|++.++ +.| ++=...+.|.
T Consensus 140 ~ly~tD~g~~~~I-----------------------~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~ 196 (619)
T 3s94_A 140 FMYWTDWGEVPKI-----------------------ERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIH 196 (619)
T ss_dssp EEEEEECSSSCEE-----------------------EEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEE
T ss_pred eEEEeccCCCCEE-----------------------EEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEE
Confidence 4433322 1233 23344555444443 23345688899886 444 4445567788
Q ss_pred EEeCCC
Q 006825 592 LWHLSS 597 (630)
Q Consensus 592 IWDl~t 597 (630)
..|+..
T Consensus 197 ~~~~dG 202 (619)
T 3s94_A 197 KSNLDG 202 (619)
T ss_dssp EESSSC
T ss_pred EecCCC
Confidence 888754
No 303
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=89.15 E-value=4.3 Score=41.98 Aligned_cols=69 Identities=7% Similarity=-0.047 Sum_probs=38.4
Q ss_pred CcCEEEEEEccC---CCEE-EEEeCC-----CcEEEEECcCCce--eeeeecccc--cCcccceEEEEECCCCCEEEEee
Q 006825 456 NGSIWSIKFSLD---GRYL-ASAGED-----CVIHVWQVVESER--KGELLEKQE--DGHLNMLLLANGSPEPTSLSPKH 522 (630)
Q Consensus 456 t~~V~sVaFSpD---G~~L-ASgS~D-----gtIrVWDl~tg~~--~~~l~~~~~--~gh~~~V~svafSpdg~~lasgs 522 (630)
......|+|+|+ +.+| ++-... ..|..|++..+.. ...++.... .+.......++|.|||.++++.+
T Consensus 74 ~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 74 ESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp TCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred CCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 356789999998 4444 443332 5677787764321 112221111 11112235789999998877754
Q ss_pred CC
Q 006825 523 LD 524 (630)
Q Consensus 523 ~D 524 (630)
..
T Consensus 154 ~~ 155 (352)
T 2ism_A 154 EV 155 (352)
T ss_dssp CT
T ss_pred CC
Confidence 43
No 304
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=87.31 E-value=13 Score=38.30 Aligned_cols=67 Identities=9% Similarity=0.011 Sum_probs=35.7
Q ss_pred CcCEEEEEEccC----CCEEEEEeC-------CCcEEEEECcCCc----eeeeeecc-c---ccCcccceEEEEECCCCC
Q 006825 456 NGSIWSIKFSLD----GRYLASAGE-------DCVIHVWQVVESE----RKGELLEK-Q---EDGHLNMLLLANGSPEPT 516 (630)
Q Consensus 456 t~~V~sVaFSpD----G~~LASgS~-------DgtIrVWDl~tg~----~~~~l~~~-~---~~gh~~~V~svafSpdg~ 516 (630)
.+....|+|+|+ +.+.++-.. ...|..|++.... ....++.. . ...|. ...++|.|||.
T Consensus 65 ~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~~pdG~ 142 (353)
T 2g8s_A 65 QGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVFDGKGY 142 (353)
T ss_dssp TCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEECSSSE
T ss_pred CCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEECCCCc
Confidence 345789999995 544444332 2245556654321 12222211 1 11232 34699999998
Q ss_pred EEEEeeCC
Q 006825 517 SLSPKHLD 524 (630)
Q Consensus 517 ~lasgs~D 524 (630)
++++.+..
T Consensus 143 Lyv~~Gd~ 150 (353)
T 2g8s_A 143 LFIALGEN 150 (353)
T ss_dssp EEEEECCT
T ss_pred EEEEECCC
Confidence 77775443
No 305
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=86.70 E-value=29 Score=36.13 Aligned_cols=155 Identities=6% Similarity=-0.130 Sum_probs=85.0
Q ss_pred EeecCCCccEecccCCCCceeEEecCCcc-------CCEEEEEE---cCCCCeEEeecCCCCCccccCCcceEEEeecCC
Q 006825 352 EEGNKDSFDLNNNGSSGGGMKSKKKGSWF-------KSIRTVAS---SVTGHKERRSSDERDTSSEKGGRRSSSATDDSQ 421 (630)
Q Consensus 352 aSgS~D~tvr~vWD~~tG~~~~~lk~gH~-------~~V~sVAf---SpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~ 421 (630)
++.-..++|. .||...+....... ... ..+..|.+ .|+|.+++.. +- ..+|..
T Consensus 29 vs~l~~g~V~-~~~~~~~~~~~~~~-~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~-~~--------------~~af~~ 91 (334)
T 2p9w_A 29 QSNLYKGRIE-VYNPKTQSHFNVVI-DGASSNGDGEQQMSGLSLLTHDNSKRLFAVM-KN--------------AKSFNF 91 (334)
T ss_dssp EEETTTTEEE-EECTTTCCEEEECC-TTTCCSSCCSEEEEEEEESSSSSCCEEEEEE-EE--------------TTTTCT
T ss_pred EEeccCCEEE-EEcCCCCeEEEEec-CCccccCCCcceeeEEEEeccCCCCcEEEEE-cc--------------cccccc
Confidence 4444667887 88887554333322 221 13467788 5776665521 00 001111
Q ss_pred CeEEEecCCcEEEEEeCC---CCcccceeeeeEecccC-----------cCEEEEEEccCCCEEEEEeCC-CcEEEEECc
Q 006825 422 DVSFHGQERVRVRQYGKS---CKDLTALYKCQEIQAHN-----------GSIWSIKFSLDGRYLASAGED-CVIHVWQVV 486 (630)
Q Consensus 422 d~l~Sgs~Dg~VriWd~~---~~el~~~~~v~tL~gHt-----------~~V~sVaFSpDG~~LASgS~D-gtIrVWDl~ 486 (630)
.+ ..-+.+..|..||+. +++... ...|.+.. .....|+..++|+..++++.- +.|...+..
T Consensus 92 ~g-~~~~g~~~v~~~Dl~~~~tg~~~~---~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd 167 (334)
T 2p9w_A 92 AD-QSSHGASSFHSFNLPLSENSKPVW---SVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD 167 (334)
T ss_dssp TS-CCSSSCCEEEEEESSCCTTCCCSE---EEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT
T ss_pred cc-cccCCCCEEEEEcCCcCCCCCEEE---EecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC
Confidence 00 001235678888887 443221 12222221 348899999999999998887 776666654
Q ss_pred CCceeeeee-cccccCcccceEEEEECCCCCEEEEeeCCCeee
Q 006825 487 ESERKGELL-EKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLE 528 (630)
Q Consensus 487 tg~~~~~l~-~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~ 528 (630)
. +....+. .............++++|++.+|+.....+.+.
T Consensus 168 G-~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~ 209 (334)
T 2p9w_A 168 G-KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALT 209 (334)
T ss_dssp S-CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEE
T ss_pred C-CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEE
Confidence 3 2222221 111122223466899999998888876677773
No 306
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=85.92 E-value=5.1 Score=39.71 Aligned_cols=119 Identities=9% Similarity=-0.041 Sum_probs=64.1
Q ss_pred cCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeeccc---ccCcccceEEEEECCCCCEEEEeeCCCeeeeeccc
Q 006825 457 GSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQ---EDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRG 533 (630)
Q Consensus 457 ~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~---~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~ 533 (630)
..+..|+|+|+|.+.+. .++.+.--+..+.....-+-... ..+... ...+.|.|+|.+.++ .|+.|..+...
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 46779999999997666 56665544443321111000000 012222 468899999998888 56888544432
Q ss_pred ccccccccccCccccccEEEeCCCCceEEeccCCCCEEEEEEcCCCeEEEEECCCcEEEEeCC
Q 006825 534 RSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLS 596 (630)
Q Consensus 534 ~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd~~LaSgS~DgtVrIWDl~ 596 (630)
.... .-|--.+..+ -.+-=..+..|.|.|++.|.... |+.++-+-..
T Consensus 116 ~~~~-------------~~Wl~~a~~v--g~~gw~~~~~lff~p~G~Lyav~-dg~lyr~~~P 162 (236)
T 1tl2_A 116 QSDT-------------DNWIARATEV--GSGGWSGFKFLFFHPNGYLYAVH-GQQFYKALPP 162 (236)
T ss_dssp CSTT-------------CCHHHHSEEE--ECSSGGGEEEEEECTTSCEEEEE-TTEEEEECCC
T ss_pred cCCC-------------CceeccccEe--ccCCCCceEEEEECCCceEEEEe-CCcEEecCCC
Confidence 2100 0111111111 11112467899999996666666 8886555544
No 307
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=85.37 E-value=36 Score=35.01 Aligned_cols=62 Identities=18% Similarity=0.029 Sum_probs=39.0
Q ss_pred CcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecc-cccCcccceEEEEECCC----CCEEEEe
Q 006825 456 NGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEK-QEDGHLNMLLLANGSPE----PTSLSPK 521 (630)
Q Consensus 456 t~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~-~~~gh~~~V~svafSpd----g~~lasg 521 (630)
-..-+.|+|.|+|+++++ ..++.|++++ .++. ..+... ...........|+++|+ +.++++-
T Consensus 28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~ 94 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGK--KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYA 94 (354)
T ss_dssp CSCEEEEEEEETTEEEEE-ETTTEEEEEC-SSCE--EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEE
T ss_pred CCCCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCc--eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEE
Confidence 345789999999996665 5569999997 3444 222110 11122356789999997 5555544
No 308
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=83.15 E-value=58 Score=35.62 Aligned_cols=143 Identities=9% Similarity=-0.059 Sum_probs=74.8
Q ss_pred eeEEEeec----ceEeecCC-CccEecccCCCCceeEEecCC--ccCCEEEEEE-------cCCCC-eEEeecCC-C---
Q 006825 342 VQELMRRQ----NVEEGNKD-SFDLNNNGSSGGGMKSKKKGS--WFKSIRTVAS-------SVTGH-KERRSSDE-R--- 402 (630)
Q Consensus 342 V~~Lafs~----~laSgS~D-~tvr~vWD~~tG~~~~~lk~g--H~~~V~sVAf-------SpdG~-~lasgS~D-~--- 402 (630)
...|+|.| .|...... ..++ +-|..++........+ .....+.||| +++|. ++++-..+ .
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~-~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQ-LIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEE-EEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCEEEEccCCCCEEEEEECCCCeEE-EEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 45677875 23333332 4455 6677766655444322 3456899999 99998 44443222 0
Q ss_pred ---------CC-ccccC-C-cceE------EEeecCC-C--eEEEecCCcEEEEEeCC-------CCccc-----c----
Q 006825 403 ---------DT-SSEKG-G-RRSS------SATDDSQ-D--VSFHGQERVRVRQYGKS-------CKDLT-----A---- 445 (630)
Q Consensus 403 ---------dt-~s~~g-h-~~~V------sa~~~s~-d--~l~Sgs~Dg~VriWd~~-------~~el~-----~---- 445 (630)
.. +.... . ...+ ..++..+ + .+++-...++|..+|.. ++.+. .
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~ 299 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT 299 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred CceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence 00 01110 0 0011 1122233 2 24556677888888876 44430 0
Q ss_pred eeeeeEecccCcCEEEEEEccCCCE-EEEEeCCCcEEEEECc
Q 006825 446 LYKCQEIQAHNGSIWSIKFSLDGRY-LASAGEDCVIHVWQVV 486 (630)
Q Consensus 446 ~~~v~tL~gHt~~V~sVaFSpDG~~-LASgS~DgtIrVWDl~ 486 (630)
+..+..+ +....-+.|+|+|+|++ +++=.....|+.++..
T Consensus 300 ~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 300 FKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp EEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred cceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 0111112 22344679999999995 4444566788886653
No 309
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=82.63 E-value=41 Score=36.82 Aligned_cols=148 Identities=7% Similarity=-0.044 Sum_probs=75.3
Q ss_pred cEEEEEeCCCCcccceeeeeEecccCcCEEEEEE-------ccCCCEEEEEeCCC-------cEEEEECcC-Ccee----
Q 006825 431 VRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKF-------SLDGRYLASAGEDC-------VIHVWQVVE-SERK---- 491 (630)
Q Consensus 431 g~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaF-------SpDG~~LASgS~Dg-------tIrVWDl~t-g~~~---- 491 (630)
..|++.|...+.+..+.. .-.+.......|+| +++|++|+.+...+ .|.+.+... +...
T Consensus 162 ~~i~~ID~~~~~v~~l~~--~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~ 239 (496)
T 3kya_A 162 KAIQLIDLKNRMLSSPLN--INTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSD 239 (496)
T ss_dssp EEEEEEETTTTEEEEEEC--CTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSC
T ss_pred CeEEEEECCCCEEEEEEc--cCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeeccc
Confidence 568888887765422110 00112345899999 99999666665443 255555333 2221
Q ss_pred -eeeecccccCcccceEEEEECC-CCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeC-----CC--CceEE
Q 006825 492 -GELLEKQEDGHLNMLLLANGSP-EPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-----SD--KPICS 562 (630)
Q Consensus 492 -~~l~~~~~~gh~~~V~svafSp-dg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdl-----sg--k~l~t 562 (630)
..+ . -......++++| ++.++++....+.|...+....... . ... .+|.. .+ +.+.+
T Consensus 240 ~~~v-----~-~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~-~--~tg-----~~~tp~~~~~~g~~~~l~~ 305 (496)
T 3kya_A 240 IQLI-----A-AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKT-I--KNG-----GSWDPIVKNNPNTFKQLFT 305 (496)
T ss_dssp EEEE-----E-EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHH-H--HTT-----CCCCCBGGGCTTTEEEEEE
T ss_pred ceee-----c-cCCCceEEEEcCCCCeEEEEECCCCEEEEEeccccccc-c--cCc-----eeecccccccccccceeEe
Confidence 111 0 012334678899 4666767767777755444300000 0 000 11100 00 01111
Q ss_pred eccCCCCEEEEEEcCC-C-eEEEEECCCcEEEEeC
Q 006825 563 FQGHLDDVLDLSWSKS-Q-HLLSSSMDKTVRLWHL 595 (630)
Q Consensus 563 L~GHs~~V~sLafSPd-~-~LaSgS~DgtVrIWDl 595 (630)
+ +....-..|+|+|+ + ++++=+..+.|+.++.
T Consensus 306 ~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~ 339 (496)
T 3kya_A 306 I-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY 339 (496)
T ss_dssp C-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred c-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence 2 22334578999999 6 4566677788888554
No 310
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=82.51 E-value=19 Score=35.60 Aligned_cols=66 Identities=11% Similarity=0.019 Sum_probs=43.1
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecccc--cCcccceEEEEECCCCCEEEEeeCCCeee
Q 006825 459 IWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQE--DGHLNMLLLANGSPEPTSLSPKHLDNHLE 528 (630)
Q Consensus 459 V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~~~--~gh~~~V~svafSpdg~~lasgs~Dg~I~ 528 (630)
-.++.|.|+|.+.++ .||.|.-|+-.+......+..... .+--..+..|.+.|+|.+.+.. |+.+.
T Consensus 90 F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly 157 (236)
T 1tl2_A 90 FQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY 157 (236)
T ss_dssp CSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred ceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence 478999999998887 569888887644322222110000 1112457899999999988877 66653
No 311
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=80.37 E-value=16 Score=43.28 Aligned_cols=37 Identities=16% Similarity=0.130 Sum_probs=33.3
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeee
Q 006825 458 SIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGEL 494 (630)
Q Consensus 458 ~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l 494 (630)
.|.+++..++..+|+|-+.|+++|||++.+++++.+.
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 5788888889999999999999999999999988764
No 312
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=78.04 E-value=63 Score=34.94 Aligned_cols=100 Identities=16% Similarity=0.104 Sum_probs=62.6
Q ss_pred cEEEEEeCCCCcccceeeeeEeccc--CcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCcee------------eeeec
Q 006825 431 VRVRQYGKSCKDLTALYKCQEIQAH--NGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERK------------GELLE 496 (630)
Q Consensus 431 g~VriWd~~~~el~~~~~v~tL~gH--t~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~------------~~l~~ 496 (630)
..||.-++.... .|....+..| -..|..+..+|+|++||..+ +.+|.|-.+..+... +.+..
T Consensus 41 n~iR~~~i~~~~---~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l 116 (452)
T 3pbp_A 41 NIIRWYNVLTDS---LYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSI 116 (452)
T ss_dssp TEEEEEETTTCS---SCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEG
T ss_pred CEEEEEECCCCC---cceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEc
Confidence 567766665321 2323333321 22477899999999999886 468999888743211 11111
Q ss_pred cccc-CcccceEEEEECCC---CCEEEEeeCCCeeeeecccc
Q 006825 497 KQED-GHLNMLLLANGSPE---PTSLSPKHLDNHLEKKRRGR 534 (630)
Q Consensus 497 ~~~~-gh~~~V~svafSpd---g~~lasgs~Dg~I~i~~~~~ 534 (630)
.... .....|..+.|||- +..|++-..|++|++|+..+
T Consensus 117 ~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 117 DEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN 158 (452)
T ss_dssp GGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred CCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence 1111 12467999999997 56788888999997776654
No 313
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=77.54 E-value=73 Score=33.33 Aligned_cols=161 Identities=12% Similarity=0.127 Sum_probs=91.4
Q ss_pred EEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEcc----CCCE----EEEEeC--CCcEEEEECc--CCcee
Q 006825 424 SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL----DGRY----LASAGE--DCVIHVWQVV--ESERK 491 (630)
Q Consensus 424 l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSp----DG~~----LASgS~--DgtIrVWDl~--tg~~~ 491 (630)
++.....+-+.+||+..+. ++.+.. +.++.|.+-| .|+. ++|.-. +.+|++|++. +++ +
T Consensus 43 ii~t~k~~gL~Vydl~G~~------l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l 113 (355)
T 3amr_A 43 LITTNKKSGLVVYSLDGKM------LHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-L 113 (355)
T ss_dssp EEEEETTTEEEEEETTSCE------EEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-E
T ss_pred EEEEcCCCCEEEEcCCCcE------EEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-e
Confidence 4444556779999995553 455543 5566766665 2332 333333 5889999773 332 3
Q ss_pred eeeecc--cccCcccceEEEEE--CCC-CC-EEEEeeCCCeeeeecccccccccccccCccccccEEEe-----CCCCce
Q 006825 492 GELLEK--QEDGHLNMLLLANG--SPE-PT-SLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFA-----LSDKPI 560 (630)
Q Consensus 492 ~~l~~~--~~~gh~~~V~svaf--Spd-g~-~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwd-----lsgk~l 560 (630)
..+... +...-...+..+++ +|. ++ +++....++.+..|. +.+ ++.+.+
T Consensus 114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~--------------------l~~~~~g~~~~~lV 173 (355)
T 3amr_A 114 QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYE--------------------LKADKNGYISGKKV 173 (355)
T ss_dssp EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEE--------------------EEECTTSCEEEEEE
T ss_pred eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEE--------------------EEeCCCCcccceEE
Confidence 332100 00011134555666 664 44 455566667764332 111 133566
Q ss_pred EEeccCCCCEEEEEEcCC-CeEEEEECCCcEEEEeCC-----CCcEEEEEe--c-CCceEEEE
Q 006825 561 CSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLS-----SKTCLKIFS--H-SDYDISLV 614 (630)
Q Consensus 561 ~tL~GHs~~V~sLafSPd-~~LaSgS~DgtVrIWDl~-----tg~~l~t~~--H-~~~V~sVa 614 (630)
++|.-. ..+..++..+. ++|..+=.|.-|..++.. +++.+..+. | ...|..|+
T Consensus 174 R~f~lg-sq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLa 235 (355)
T 3amr_A 174 RAFKMN-SQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLT 235 (355)
T ss_dssp EEEECS-SCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEE
T ss_pred EEecCC-CCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEE
Confidence 776643 46888888887 999999999766556644 456666664 2 23566666
No 314
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=77.41 E-value=67 Score=32.83 Aligned_cols=63 Identities=16% Similarity=0.101 Sum_probs=38.1
Q ss_pred CcCEEEEEEccCCC-EEEEEeCCCcEEEEECcCCceeeeeecc--cccCcccceEEEEECCC----CCEEEE
Q 006825 456 NGSIWSIKFSLDGR-YLASAGEDCVIHVWQVVESERKGELLEK--QEDGHLNMLLLANGSPE----PTSLSP 520 (630)
Q Consensus 456 t~~V~sVaFSpDG~-~LASgS~DgtIrVWDl~tg~~~~~l~~~--~~~gh~~~V~svafSpd----g~~las 520 (630)
-..-+.|+|.|+|+ ++++ ...+.|++++.. +.....+... ...........++++|+ +.++++
T Consensus 17 l~~P~~i~~~pdG~~l~V~-e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~ 86 (353)
T 2g8s_A 17 LDHPWALAFLPDNHGMLIT-LRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLS 86 (353)
T ss_dssp ESSEEEEEECSTTCCEEEE-ETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEE
T ss_pred CCCcEEEEEcCCCCEEEEE-eCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEE
Confidence 34568999999999 6665 567999999853 3321111100 01122345688999995 555554
No 315
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=76.64 E-value=40 Score=36.17 Aligned_cols=71 Identities=13% Similarity=-0.018 Sum_probs=42.4
Q ss_pred EecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeeecc-ccc--CcccceEEEEECCC----CCEEEEe
Q 006825 451 EIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEK-QED--GHLNMLLLANGSPE----PTSLSPK 521 (630)
Q Consensus 451 tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~~~-~~~--gh~~~V~svafSpd----g~~lasg 521 (630)
.+...-..-+.|+|.|+|+++++--..+.|++++..++......... ... .....+..|+|+|+ +.++++-
T Consensus 21 ~~a~~l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~ 98 (454)
T 1cru_A 21 VILSNLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISG 98 (454)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEE
T ss_pred EEECCCCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEE
Confidence 33333446789999999998887554457888876555432111101 011 13456789999995 5554444
No 316
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=69.17 E-value=1.1e+02 Score=31.65 Aligned_cols=70 Identities=14% Similarity=0.086 Sum_probs=45.2
Q ss_pred EecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeee-ecccccCcccceEEEEECCC----CCEEEE
Q 006825 451 EIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGEL-LEKQEDGHLNMLLLANGSPE----PTSLSP 520 (630)
Q Consensus 451 tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l-~~~~~~gh~~~V~svafSpd----g~~las 520 (630)
.+...-..-+.|+|.|||++|++--..|.|++++..++...... +.............|+++|+ +.++++
T Consensus 26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~ 100 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAY 100 (347)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEE
T ss_pred EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEE
Confidence 34444556789999999998888765899999987655432111 00112233567889999996 555443
No 317
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=68.37 E-value=36 Score=35.36 Aligned_cols=115 Identities=6% Similarity=-0.050 Sum_probs=65.1
Q ss_pred ceEeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCCeEEEe--
Q 006825 350 NVEEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHG-- 427 (630)
Q Consensus 350 ~laSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d~l~Sg-- 427 (630)
.+..++.|+.+. ..|.++|+.+-+++......+.. ... +.. . ....++.+
T Consensus 12 ~V~v~t~dG~l~-Ald~~tG~~~W~~~~~~~~p~~~---~~~------------------~~~-----~-~~~~~~vv~p 63 (339)
T 2be1_A 12 ILIAADVEGGLH-AVDRRNGHIIWSIEPENFQPLIE---IQE------------------PSR-----L-ETYETLIIEP 63 (339)
T ss_dssp EEEEEETTSCEE-EEETTTTEEEEEECGGGSCCSEE---CCC------------------SCT-----T-TSSEEEEECC
T ss_pred EEEEEeCCCeEE-EEECCCCcEEEEecCCccCCcEE---ecC------------------Ccc-----c-cCCcEEEEEE
Confidence 467889999999 89999999999887432122211 000 000 0 11122222
Q ss_pred cCCcEEEEEeCCCCcccceeeeeEecc--cCcCEEE---EEE-----ccCCCEEEEEeCCCcEEEEECcCCceeeeee
Q 006825 428 QERVRVRQYGKSCKDLTALYKCQEIQA--HNGSIWS---IKF-----SLDGRYLASAGEDCVIHVWQVVESERKGELL 495 (630)
Q Consensus 428 s~Dg~VriWd~~~~el~~~~~v~tL~g--Ht~~V~s---VaF-----SpDG~~LASgS~DgtIrVWDl~tg~~~~~l~ 495 (630)
..||+|..++..++... + ...+.. ...++.. ..+ ...+..+++|+.++++..-|+.+|+.+.++.
T Consensus 64 ~~dG~l~a~~~~~G~~~-~--~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~ 138 (339)
T 2be1_A 64 FGDGNIYYFNAHQGLQK-L--PLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFG 138 (339)
T ss_dssp STTTEEEEEETTTEEEE-E--EEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEES
T ss_pred CCCCEEEEEECCCCcEE-e--eeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence 47888888877655211 0 011111 1122221 000 0134578889999999999999999988863
No 318
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=68.27 E-value=14 Score=43.84 Aligned_cols=37 Identities=16% Similarity=0.441 Sum_probs=33.0
Q ss_pred CEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825 569 DVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS 605 (630)
Q Consensus 569 ~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~ 605 (630)
.|.+++..++ .+|++-+.|+++|||++.+++|+.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 5677888888 899999999999999999999999874
No 319
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=64.62 E-value=13 Score=44.78 Aligned_cols=37 Identities=16% Similarity=0.441 Sum_probs=32.0
Q ss_pred CEEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825 569 DVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS 605 (630)
Q Consensus 569 ~V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~ 605 (630)
.|.+++..++ .+|++-+.|+++|||++.+++|+.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 4556667777 899999999999999999999999874
No 320
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=61.95 E-value=74 Score=34.30 Aligned_cols=70 Identities=13% Similarity=0.014 Sum_probs=38.3
Q ss_pred CcCEEEEEEccC----CCEEEEEeCC--C----------cEEEEECcCC-------ceeeeeecccccCcccceEEEEEC
Q 006825 456 NGSIWSIKFSLD----GRYLASAGED--C----------VIHVWQVVES-------ERKGELLEKQEDGHLNMLLLANGS 512 (630)
Q Consensus 456 t~~V~sVaFSpD----G~~LASgS~D--g----------tIrVWDl~tg-------~~~~~l~~~~~~gh~~~V~svafS 512 (630)
......|+|+|+ +.+.++-+.+ + .|.-|.+..+ .....++.............|+|.
T Consensus 68 e~Gllgia~~P~f~~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fg 147 (463)
T 2wg3_C 68 ERGLLSLAFHPNYKKNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFG 147 (463)
T ss_dssp CCSEEEEEECTTHHHHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEEC
T ss_pred CCcceeeEeCCCCcCCCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeEC
Confidence 456889999996 5554443321 1 3333665431 111222211111222345789999
Q ss_pred CCCCEEEEeeCCC
Q 006825 513 PEPTSLSPKHLDN 525 (630)
Q Consensus 513 pdg~~lasgs~Dg 525 (630)
|||.++++.+..+
T Consensus 148 pDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 148 PDGFLYIILGDGM 160 (463)
T ss_dssp TTSCEEEEECCTT
T ss_pred CCCcEEEEeCCCC
Confidence 9999888866543
No 321
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=61.48 E-value=1.1e+02 Score=32.98 Aligned_cols=64 Identities=11% Similarity=-0.015 Sum_probs=38.3
Q ss_pred CcCEEEEEEccCCC--EEEEEeCCCcEEEEECcCCc---eeeeeeccccc----CcccceEEEEECCC----CCEEEE
Q 006825 456 NGSIWSIKFSLDGR--YLASAGEDCVIHVWQVVESE---RKGELLEKQED----GHLNMLLLANGSPE----PTSLSP 520 (630)
Q Consensus 456 t~~V~sVaFSpDG~--~LASgS~DgtIrVWDl~tg~---~~~~l~~~~~~----gh~~~V~svafSpd----g~~las 520 (630)
-..-+.|+|.|||. +|+ +-..|.|++++..... .+..+...... +....+..|+|+|+ +.++++
T Consensus 13 L~~P~~~a~~pdG~~rl~V-~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~ 89 (463)
T 2wg3_C 13 LRQPVGALHSGDGSQRLFI-LEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVS 89 (463)
T ss_dssp ESSEEEEECCSSSSCCEEE-EETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEE
T ss_pred CCCceEEEECCCCCeEEEE-EeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEE
Confidence 34568999999995 555 4678999999753221 11111100011 12456789999997 555444
No 322
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=56.97 E-value=2.4e+02 Score=31.46 Aligned_cols=111 Identities=6% Similarity=-0.057 Sum_probs=60.2
Q ss_pred eEEEeecCCCe-EEEecCCcEEEEEeCCCCcccceeeeeEec-ccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCC--
Q 006825 413 SSSATDDSQDV-SFHGQERVRVRQYGKSCKDLTALYKCQEIQ-AHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVES-- 488 (630)
Q Consensus 413 ~Vsa~~~s~d~-l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~-gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg-- 488 (630)
.|.++....++ ++.|.. +-+..|+..++++.......... -....|.+|...++|++.+ |...+-|.++|..+.
T Consensus 374 ~v~~i~~d~~g~lWigt~-~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gT~~~Gl~~~~~~~~~~ 451 (758)
T 3ott_A 374 RIRHIYEDKEQQLWIATD-GSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWI-STCLGGIFVVDKHKLMQ 451 (758)
T ss_dssp CEEEEEECTTSCEEEEET-TEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEE-EESSSCEEEEEHHHHHH
T ss_pred ceEEEEECCCCCEEEEeC-CcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEE-EECCCceEEEccccccc
Confidence 45665544455 887774 46888988776543211000000 0234689999888887544 665556888886431
Q ss_pred ---ceee--eeecccccC-cccceEEEEECCCCCEEEE-eeCCCe
Q 006825 489 ---ERKG--ELLEKQEDG-HLNMLLLANGSPEPTSLSP-KHLDNH 526 (630)
Q Consensus 489 ---~~~~--~l~~~~~~g-h~~~V~svafSpdg~~las-gs~Dg~ 526 (630)
.... ..... ..+ ....|.++...++|.+.+. +...|.
T Consensus 452 ~~~~~~~~~~~~~~-~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl 495 (758)
T 3ott_A 452 STSGQYIAEQNYSV-HNGLSGMFINQIIPDNEGNVWVLLYNNKGI 495 (758)
T ss_dssp CCSSEEECSEEECG-GGTCSCSCEEEEEECTTSCEEEEETTCSSE
T ss_pred cCCcceeccccccc-ccccccceeeeEEEcCCCCEEEEccCCCCc
Confidence 1110 00000 011 1235888888888887763 434453
No 323
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=56.72 E-value=29 Score=38.93 Aligned_cols=30 Identities=17% Similarity=0.207 Sum_probs=24.0
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEECcCC
Q 006825 459 IWSIKFSLDGRYLASAGEDCVIHVWQVVES 488 (630)
Q Consensus 459 V~sVaFSpDG~~LASgS~DgtIrVWDl~tg 488 (630)
-+-.+|.++|....|---|..|-.|++...
T Consensus 380 PlHt~Fd~~G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 380 PLHTTFDGRGNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp EEEEEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred ccEEEECCCCceEeeeeecceEEEEeccHH
Confidence 466899999966666668999999999653
No 324
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=51.11 E-value=19 Score=41.35 Aligned_cols=36 Identities=14% Similarity=0.289 Sum_probs=30.3
Q ss_pred CEEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825 569 DVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS 605 (630)
Q Consensus 569 ~V~sLafSPd~~LaSgS~DgtVrIWDl~tg~~l~t~~ 605 (630)
.|.++.+ ++.+|++-+.|+++|||++.+++|+.+..
T Consensus 223 ~Is~~~~-~~~fLftL~~Dh~LRiWsL~t~~lv~t~D 258 (729)
T 3f7f_A 223 VISCKLF-HERYLIVLTQNCHLKIWDLTSFTLIQDYD 258 (729)
T ss_dssp EEEEEEE-TTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEecc-CCcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence 4565555 35899999999999999999999998875
No 325
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=48.08 E-value=5.1e+02 Score=32.49 Aligned_cols=157 Identities=13% Similarity=0.160 Sum_probs=82.4
Q ss_pred cEEEEEeCCCCcccceeeeeEeccc----CcCEEEEEEccCCCEEEEEe-------CCCcEEEEECcCCceeeeeecccc
Q 006825 431 VRVRQYGKSCKDLTALYKCQEIQAH----NGSIWSIKFSLDGRYLASAG-------EDCVIHVWQVVESERKGELLEKQE 499 (630)
Q Consensus 431 g~VriWd~~~~el~~~~~v~tL~gH----t~~V~sVaFSpDG~~LASgS-------~DgtIrVWDl~tg~~~~~l~~~~~ 499 (630)
..|.-|++..... ++..|.-| ...|..-..+++.++++-.| -.|.+.++.++.+.. +. .
T Consensus 125 ~aVyHW~~~~~s~----P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s--Q~----i 194 (1630)
T 1xi4_A 125 NAVYHWSMEGESQ----PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS--QP----I 194 (1630)
T ss_pred CeEEEeccCCCCc----cHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc--hh----h
Confidence 3588898854211 22233333 34577778888998877543 457888888865432 22 3
Q ss_pred cCcccceEEEEEC--CC-CCEEEEeeC---CCeeeeeccccc-ccccccccCccccccEEEeCCCCceEEe---ccCCCC
Q 006825 500 DGHLNMLLLANGS--PE-PTSLSPKHL---DNHLEKKRRGRS-INRKSLSLDHMVVPETVFALSDKPICSF---QGHLDD 569 (630)
Q Consensus 500 ~gh~~~V~svafS--pd-g~~lasgs~---Dg~I~i~~~~~~-~~~~s~s~d~~i~~~~Vwdlsgk~l~tL---~GHs~~ 569 (630)
.||......+... +. ..+++.+.. .+.+.+...+.. .....+ ..+.+..+ ..-.+-
T Consensus 195 egha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f--------------~kk~~~~~~~~~~~~Df 260 (1630)
T 1xi4_A 195 EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF--------------PKKAVDVFFPPEAQNDF 260 (1630)
T ss_pred hHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCC--------------ccccccccCCcccccCc
Confidence 6666554433332 11 223322221 134433332221 000000 00111111 111233
Q ss_pred EEEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceE
Q 006825 570 VLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDI 611 (630)
Q Consensus 570 V~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~ 611 (630)
-.++..++. +.+.--..-|.|.++|+.||.|+..-. ....|-
T Consensus 261 pv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF 304 (1630)
T 1xi4_A 261 PVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIF 304 (1630)
T ss_pred ceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceE
Confidence 356777877 888888889999999999999887554 333443
No 326
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=47.30 E-value=2.3e+02 Score=28.30 Aligned_cols=76 Identities=8% Similarity=0.052 Sum_probs=43.4
Q ss_pred CCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeC-CCcEEEEECcCCceeeeeecccccCcccceE
Q 006825 429 ERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE-DCVIHVWQVVESERKGELLEKQEDGHLNMLL 507 (630)
Q Consensus 429 ~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~-DgtIrVWDl~tg~~~~~l~~~~~~gh~~~V~ 507 (630)
....|...++...+ .+.|..|.. ++|+++|+.|+-.+. ...|.+-++..+... .+. .+ ...
T Consensus 127 ~~~~Iy~~~~dGs~------~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~-~l~----~~---~~~ 188 (302)
T 3s25_A 127 TATSLYRIRIDGEE------KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEA-LFY----DC---NCY 188 (302)
T ss_dssp SCEEEEEEETTSCC------CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEE-EEE----CS---CEE
T ss_pred CCceEEEEECCCCC------eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEE-EEe----CC---Ccc
Confidence 34556666666543 233444432 567888888886554 577888887655433 321 22 111
Q ss_pred EEEECCCCCEEEEeeC
Q 006825 508 LANGSPEPTSLSPKHL 523 (630)
Q Consensus 508 svafSpdg~~lasgs~ 523 (630)
..+.|++.+|+....
T Consensus 189 -~~~~P~g~~iy~t~~ 203 (302)
T 3s25_A 189 -KPVVLDDTNVYYMDV 203 (302)
T ss_dssp -EEEEEETTEEEEEEG
T ss_pred -ceeeecCCEEEEEEc
Confidence 235588888776543
No 327
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=42.36 E-value=14 Score=44.63 Aligned_cols=37 Identities=16% Similarity=0.130 Sum_probs=31.8
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeee
Q 006825 458 SIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGEL 494 (630)
Q Consensus 458 ~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l 494 (630)
.|.+++..++..+|+|-+.|+++|||++.+++++.+.
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 4556677788899999999999999999999988774
No 328
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=41.07 E-value=29 Score=39.92 Aligned_cols=37 Identities=19% Similarity=0.384 Sum_probs=30.6
Q ss_pred cCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceeeeee
Q 006825 457 GSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELL 495 (630)
Q Consensus 457 ~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~~l~ 495 (630)
..|.++.+ +..+|++-+.|+++|+|++.+++++.+..
T Consensus 222 ~~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~D 258 (729)
T 3f7f_A 222 SVISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYD 258 (729)
T ss_dssp CEEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ceEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence 45666666 57899999999999999999999887653
No 329
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=39.41 E-value=36 Score=35.38 Aligned_cols=28 Identities=11% Similarity=0.227 Sum_probs=26.0
Q ss_pred CCeEEEEECCCcEEEEeCCCCcEEEEEe
Q 006825 578 SQHLLSSSMDKTVRLWHLSSKTCLKIFS 605 (630)
Q Consensus 578 d~~LaSgS~DgtVrIWDl~tg~~l~t~~ 605 (630)
++.+++|+.++++...|+.+|+.+..+.
T Consensus 111 ~g~Vy~Gs~~g~l~ald~~tG~~~W~~~ 138 (339)
T 2be1_A 111 DEKVYTGSMRTIMYTINMLNGEIISAFG 138 (339)
T ss_dssp CEEEEECEEEEEEEEEETTTCCEEEEES
T ss_pred CCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence 3788999999999999999999999997
No 330
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=36.06 E-value=4e+02 Score=27.86 Aligned_cols=161 Identities=12% Similarity=0.127 Sum_probs=87.5
Q ss_pred cEEEEEeCCCCcccceeeeeEecccC----cCEEEEEEccCCCEEEEEe-------CCCcEEEEECcCCceeeeeecccc
Q 006825 431 VRVRQYGKSCKDLTALYKCQEIQAHN----GSIWSIKFSLDGRYLASAG-------EDCVIHVWQVVESERKGELLEKQE 499 (630)
Q Consensus 431 g~VriWd~~~~el~~~~~v~tL~gHt----~~V~sVaFSpDG~~LASgS-------~DgtIrVWDl~tg~~~~~l~~~~~ 499 (630)
..|.-|++.... .++..+.-|. ..|..-..+++.++++-.| -.|.+.||.++.+.. +. .
T Consensus 126 taVyHWs~~~~s----~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s--Q~----i 195 (365)
T 2xzh_A 126 NAVYHWSMEGES----QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS--QP----I 195 (365)
T ss_dssp SEEEEEESSTTC----CCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEE--EE----E
T ss_pred CcEEEEcccCCC----CCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccccc--ce----e
Confidence 358889886522 1233444442 4577777888988776654 236778888865432 22 3
Q ss_pred cCcccceEEEEECCC---CCEEEEeeCC---CeeeeecccccccccccccCccccccEEEeCCCCceEEe---ccCCCCE
Q 006825 500 DGHLNMLLLANGSPE---PTSLSPKHLD---NHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSF---QGHLDDV 570 (630)
Q Consensus 500 ~gh~~~V~svafSpd---g~~lasgs~D---g~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL---~GHs~~V 570 (630)
.||......+.+... ..+++.+... +.+.+...+.... ..... ..+.+..+ +.-.+--
T Consensus 196 eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~------~~~~f-------~kk~vdi~fppea~~DFP 262 (365)
T 2xzh_A 196 EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPT------GNQPF-------PKKAVDVFFPPEAQNDFP 262 (365)
T ss_dssp CCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCT------TCCCC-------CCEEEEECCCTTCTTCCE
T ss_pred eeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCC------CCCCc-------ccccceeeCCccccCCce
Confidence 777665544433221 1233333221 2333222221100 00000 00111111 1223445
Q ss_pred EEEEEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE
Q 006825 571 LDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV 614 (630)
Q Consensus 571 ~sLafSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa 614 (630)
.++..++. +.+.--..=|.|+++|+.||.|+..-. -.+.|-..+
T Consensus 263 Vamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta 308 (365)
T 2xzh_A 263 VAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTA 308 (365)
T ss_dssp EEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred EEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEec
Confidence 67888888 888888899999999999999998776 444444333
No 331
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=35.02 E-value=3.1e+02 Score=26.27 Aligned_cols=53 Identities=15% Similarity=0.239 Sum_probs=28.6
Q ss_pred EEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCC-------CcEEEEECcCCc
Q 006825 432 RVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED-------CVIHVWQVVESE 489 (630)
Q Consensus 432 ~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~D-------gtIrVWDl~tg~ 489 (630)
.+.+||..+.+...+ ..+........++.+ ++++++.||.+ ..+.+||+.+..
T Consensus 125 ~~~~~d~~~~~W~~~---~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~ 184 (302)
T 2xn4_A 125 SVEAYNIKSNEWFHV---APMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNE 184 (302)
T ss_dssp EEEEEETTTTEEEEE---CCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTE
T ss_pred eEEEEeCCCCeEeec---CCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCc
Confidence 578888876654322 112111111122222 67777777653 348888987654
No 332
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=29.15 E-value=6.3e+02 Score=28.01 Aligned_cols=183 Identities=12% Similarity=0.082 Sum_probs=93.0
Q ss_pred eEEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCCCcEEEEECcCCceee
Q 006825 413 SSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKG 492 (630)
Q Consensus 413 ~Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~DgtIrVWDl~tg~~~~ 492 (630)
.|.++......++.+... -|..|+..++++...... .-.-....|.+|....+|++.+ |... -|..++..++....
T Consensus 104 ~i~~i~~~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~-~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~ 179 (758)
T 3ott_A 104 DVRTMALQGDTLWLGALN-GLYTYQLQSRKLTSFDTR-RNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFEG 179 (758)
T ss_dssp CEEEEEEETTEEEEEETT-EEEEEETTTCCEEEECHH-HHCCSCSCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEE
T ss_pred eEEEEEecCCcEEEEcCC-cceeEeCCCCeEEEeccC-CCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceEE
Confidence 355554444447777766 577788766543211000 0001134689999988888665 4444 47778876654321
Q ss_pred eeecccccCcccceEEEEECCCCCEEEEeeCCCeeeeecccccccccccccCccccccEEEeCCCCceEEecc-CCCCEE
Q 006825 493 ELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQG-HLDDVL 571 (630)
Q Consensus 493 ~l~~~~~~gh~~~V~svafSpdg~~lasgs~Dg~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~G-Hs~~V~ 571 (630)
.............|.++....++..|..+...| + ..++.....+..+.. ....|.
T Consensus 180 ~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~~G-l-----------------------~~~~~~~~~~~~~~~l~~~~i~ 235 (758)
T 3ott_A 180 IPLPVHSSQSNLFVNSLLEDTTRQCVWIGTEGY-L-----------------------FQYFPSTGQIKQTEAFHNNSIK 235 (758)
T ss_dssp ECCCCCTTCSSCCEEEEEEETTTTEEEEEEEEE-E-----------------------EEEETTTTEEEEEEEEEEEEEE
T ss_pred ecCCCccccccceeEEEEEECCCCEEEEEECCC-C-----------------------eEEcCCCCeEEeccCCCCCeEE
Confidence 110000000123477777766665433343333 3 222221111111110 123578
Q ss_pred EEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEe--------cCCceEEEE-c-CCCcEEEEe
Q 006825 572 DLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS--------HSDYDISLV-D-RLMLRFAYG 624 (630)
Q Consensus 572 sLafSPd~~LaSgS~DgtVrIWDl~tg~~l~t~~--------H~~~V~sVa-s-~~~~~lAsg 624 (630)
++...+++.|..|.. +-+.+++..+++...... ....|.++. + ...+++++.
T Consensus 236 ~i~~d~~g~lWigT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT~ 297 (758)
T 3ott_A 236 SLALDGNGDLLAGTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWLGTD 297 (758)
T ss_dssp EEEECTTCCEEEEET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEEEES
T ss_pred EEEEcCCCCEEEEeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEEEeC
Confidence 888776655655664 458888887765432211 234588888 4 345667764
No 333
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=28.14 E-value=4.2e+02 Score=25.61 Aligned_cols=184 Identities=8% Similarity=-0.028 Sum_probs=0.0
Q ss_pred CcceEEEeecCCCeEEEecC-----------CcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCC-
Q 006825 410 GRRSSSATDDSQDVSFHGQE-----------RVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED- 477 (630)
Q Consensus 410 h~~~Vsa~~~s~d~l~Sgs~-----------Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~D- 477 (630)
......++......++.|+. ...+.+||..+.+...+.....-..+...+.. ++++++.||.+
T Consensus 35 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-----~~~lyv~GG~~~ 109 (315)
T 4asc_A 35 PKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA-----LNSIYVVGGREI 109 (315)
T ss_dssp CSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE-----TTEEEEECCEES
T ss_pred CccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE-----CCEEEEEeCCcC
Q ss_pred -------CcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeC------CCeeeeecccccccccccccC
Q 006825 478 -------CVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHL------DNHLEKKRRGRSINRKSLSLD 544 (630)
Q Consensus 478 -------gtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~------Dg~I~i~~~~~~~~~~s~s~d 544 (630)
..+.+||..+.+-... ..-........+...++++++.|+. -..+..++...
T Consensus 110 ~~~~~~~~~~~~~d~~~~~W~~~-----~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~---------- 174 (315)
T 4asc_A 110 KDGERCLDSVMCYDRLSFKWGES-----DPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKK---------- 174 (315)
T ss_dssp STTCCBCCCEEEEETTTTEEEEC-----CCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTT----------
T ss_pred CCCCcccceEEEECCCCCcEeEC-----CCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCC----------
Q ss_pred ccccccEEEeCCCCceEEeccCCCCEEEEEEcCC-CeEEEEECCCc-----EEEEeCCCCcEEEEEe--cCCceEEEEcC
Q 006825 545 HMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKT-----VRLWHLSSKTCLKIFS--HSDYDISLVDR 616 (630)
Q Consensus 545 ~~i~~~~Vwdlsgk~l~tL~GHs~~V~sLafSPd-~~LaSgS~Dgt-----VrIWDl~tg~~l~t~~--H~~~V~sVas~ 616 (630)
..|..-........+|...+. + .+++.|+.++. +.+||+.+.+....-. ..-.-.+++.-
T Consensus 175 ------~~W~~~~~~p~~r~~~~~~~~------~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 242 (315)
T 4asc_A 175 ------FEWKELAPMQTARSLFGATVH------DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSL 242 (315)
T ss_dssp ------TEEEECCCCSSCCBSCEEEEE------TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE
T ss_pred ------CeEEECCCCCCchhceEEEEE------CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEE
Q ss_pred CCcEEEEec
Q 006825 617 LMLRFAYGA 625 (630)
Q Consensus 617 ~~~~lAsgs 625 (630)
.+..++.|+
T Consensus 243 ~~~l~v~GG 251 (315)
T 4asc_A 243 VGTLYAIGG 251 (315)
T ss_dssp TTEEEEEEE
T ss_pred CCEEEEECC
No 334
>1ex2_A Protein MAF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: SUC PO4; 1.85A {Bacillus subtilis} SCOP: c.51.4.2 PDB: 1exc_A*
Probab=26.82 E-value=22 Score=33.97 Aligned_cols=18 Identities=39% Similarity=0.379 Sum_probs=15.7
Q ss_pred cchHHHHHHHHHHhCCCC
Q 006825 77 ISVSERRSRLLREMGLSH 94 (630)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~ 94 (630)
+|=|-||+.||++||+.-
T Consensus 8 AS~SPrR~eLL~~~gi~f 25 (189)
T 1ex2_A 8 ASQSPRRKELLDLLQLPY 25 (189)
T ss_dssp CCCCHHHHHHHHTTCCCC
T ss_pred ECCCHHHHHHHHhCCCCe
Confidence 577899999999999954
No 335
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=26.49 E-value=5.7e+02 Score=26.68 Aligned_cols=156 Identities=13% Similarity=0.044 Sum_probs=85.7
Q ss_pred CceeecCCCCcccCCCccccccCCCCCcccccccEEEEECCCCcEEEEeeecCCCceeEEEEcCCCceEeeecceeeecC
Q 006825 259 DSMSINGNGNYIGNSGEVVEDFDGNGTAGVAEQGCLIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGH 338 (630)
Q Consensus 259 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~LddG~~~~v~e~~~dg~~~~l~dv~TG~~lt~eef~~l~GH 338 (630)
+|-..+|..+.|+-.. ..++.|.||+.-..+-...+.++ ..+|.=-+-+.|
T Consensus 70 dsAIMnP~~~ViALra---------------g~~LQiFnletK~klks~~~~e~---VvfWkWis~~~L----------- 120 (365)
T 2xzh_A 70 DSAIMNPASKVIALKA---------------GKTLQIFNIEMKSKMKAHTMTDD---VTFWKWISLNTV----------- 120 (365)
T ss_dssp SEEEECSSSSEEEEEE---------------TTEEEEEETTTTEEEEEEECSSC---EEEEEECSSSEE-----------
T ss_pred ceeeeCCCccEEEEec---------------CCeEEEechHHhhhhcceecCCc---cEEEEecCCCeE-----------
Confidence 4458888888883321 34688888888877666665543 335554444444
Q ss_pred ccceeEEEeecceEeecCCCccEecccCCCC-ceeEEecCCcc----CCEEEEEEcCCCCeEEeecCCCCCccccCCcce
Q 006825 339 SPIVQELMRRQNVEEGNKDSFDLNNNGSSGG-GMKSKKKGSWF----KSIRTVASSVTGHKERRSSDERDTSSEKGGRRS 413 (630)
Q Consensus 339 s~~V~~Lafs~~laSgS~D~tvr~vWD~~tG-~~~~~lk~gH~----~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~ 413 (630)
-|++. ..|- -|++... ...+.+. .|. ..|-.-..+++.++++-
T Consensus 121 -----------~lVT~---taVy-HWs~~~~s~P~kvFd-R~~~L~~~QIInY~~d~~~kW~~l---------------- 168 (365)
T 2xzh_A 121 -----------ALVTD---NAVY-HWSMEGESQPVKMFD-RHSSLAGCQIINYRTDAKQKWLLL---------------- 168 (365)
T ss_dssp -----------EEEES---SEEE-EEESSTTCCCEEEEE-CCGGGTTCEEEEEEECTTSCEEEE----------------
T ss_pred -----------EEEcC---CcEE-EEcccCCCCCceeee-cchhcccceEEEEEECCCCCEEEE----------------
Confidence 13332 4555 7877542 2333332 222 24445556677776542
Q ss_pred EEEeecCCCeEEEecCCcEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccC---CCEEEEEeCC---CcEEEEECcC
Q 006825 414 SSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLD---GRYLASAGED---CVIHVWQVVE 487 (630)
Q Consensus 414 Vsa~~~s~d~l~Sgs~Dg~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpD---G~~LASgS~D---gtIrVWDl~t 487 (630)
..+.- +++.+ .|.+.+|.++-+ ..|.+.||.+....+.+.-+ .++|+-+... +.++|-++..
T Consensus 169 -~GI~~-~~~~v----~G~mQLYS~er~------~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~ 236 (365)
T 2xzh_A 169 -TGISA-QQNRV----VGAMQLYSVDRK------VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGT 236 (365)
T ss_dssp -EEEEE-ETTEE----EEEEEEEETTTT------EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSS
T ss_pred -EeEec-cCCcc----ceeEEEEeeccc------ccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCC
Confidence 11111 11112 367999988655 46889999876655544221 1244434322 5788888843
No 336
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=25.29 E-value=6e+02 Score=26.50 Aligned_cols=209 Identities=6% Similarity=-0.038 Sum_probs=100.1
Q ss_pred ccEEEEECCCCcEEEEeee-c---CCCceeEEEEcCCC--ceEeeecc-eeeecCccceeEEEee---------c---ce
Q 006825 291 QGCLIKNLDNGKEFVVNEI-Q---EDGTWKKVKEVGTG--RQLTIEEF-EMCVGHSPIVQELMRR---------Q---NV 351 (630)
Q Consensus 291 ~~~~I~~LddG~~~~v~e~-~---~dg~~~~l~dv~TG--~~lt~eef-~~l~GHs~~V~~Lafs---------~---~l 351 (630)
.--|+|-||.|..-..... - .-+-....+|+.|+ +.+-.-+| .........+..|++- . ++
T Consensus 96 ~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYI 175 (381)
T 3q6k_A 96 DCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYI 175 (381)
T ss_dssp TTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEE
T ss_pred CCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEE
Confidence 3467788888854211100 0 11234568899999 88744444 2222234456666665 1 33
Q ss_pred EeecCCCccEecccCCCCceeEEecCCccCCEEEEEEcCCCCeEEeecCCCCCccccCCcceEEEeecCCC----e---E
Q 006825 352 EEGNKDSFDLNNNGSSGGGMKSKKKGSWFKSIRTVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQD----V---S 424 (630)
Q Consensus 352 aSgS~D~tvr~vWD~~tG~~~~~lk~gH~~~V~sVAfSpdG~~lasgS~D~dt~s~~gh~~~Vsa~~~s~d----~---l 424 (630)
+- +....+. |.|+.+|+..+.+. .+...=....|.-+|+.+. ... .+-.++.+++ . .
T Consensus 176 tD-~~~~gLI-Vydl~~~~swRv~~-~~~~pd~~~~~~i~G~~~~----------~~~---Gi~gIaLsp~~~~~~~~LY 239 (381)
T 3q6k_A 176 TN-FLRGALF-IYDHKKQDSWNVTH-PTFKAERPTKFDYGGKEYE----------FKA---GIFGITLGDRDSEGNRPAY 239 (381)
T ss_dssp EE-TTTTEEE-EEETTTTEEEEEEC-GGGSCCSCEEEEETTEEEE----------ECC---CEEEEEECCCCTTSCCEEE
T ss_pred Ec-CCCCcEE-EEECCCCcEEEEcc-CCCccccCcceEECCEEeE----------ecc---CceEEEecCCcCCCCeEEE
Confidence 32 3456777 99999998877663 2211111112222222110 111 1222222221 1 2
Q ss_pred EEecCCcEEEEEe---CCCCcccceeeeeEecccCc---CEEEEEEc-cCCCEEEEEeCCCcEEEEECcC-Cc---eeee
Q 006825 425 FHGQERVRVRQYG---KSCKDLTALYKCQEIQAHNG---SIWSIKFS-LDGRYLASAGEDCVIHVWQVVE-SE---RKGE 493 (630)
Q Consensus 425 ~Sgs~Dg~VriWd---~~~~el~~~~~v~tL~gHt~---~V~sVaFS-pDG~~LASgS~DgtIrVWDl~t-g~---~~~~ 493 (630)
++.-...++.--. +....+. ..++ ..|..+ .-..+++. .+|.++++--....|..|+..+ .- ....
T Consensus 240 f~plss~~ly~V~T~~L~~~~~~--~~v~-~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~ 316 (381)
T 3q6k_A 240 YLAGSAIKVYSVNTKELKQKGGK--LNPE-LLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDV 316 (381)
T ss_dssp EEESSCSEEEEEEHHHHSSTTCC--CCCE-EEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEE
T ss_pred EEECCCCcEEEEEHHHhhCcchh--hceE-EeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEE
Confidence 2322222222111 1111110 1112 223332 33456775 6898899888999999999875 21 2222
Q ss_pred eecccccCcccceEEEEECCCCCEEEEe
Q 006825 494 LLEKQEDGHLNMLLLANGSPEPTSLSPK 521 (630)
Q Consensus 494 l~~~~~~gh~~~V~svafSpdg~~lasg 521 (630)
+. ..........+.+.+++.+.+..
T Consensus 317 l~---~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 317 VY---TSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp EE---ECTTCCSEEEEEECTTSCEEEEE
T ss_pred EE---ECCCccccCeEEECCCCeEEEEE
Confidence 21 11233456677777777666555
No 337
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=24.17 E-value=4.7e+02 Score=24.94 Aligned_cols=163 Identities=9% Similarity=0.028 Sum_probs=0.0
Q ss_pred ccCCcceEEEeecCCCeEEEecCC----cEEEEEeCCCCcccceeeeeEecccCcCEEEEEEccCCCEEEEEeCC-----
Q 006825 407 EKGGRRSSSATDDSQDVSFHGQER----VRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED----- 477 (630)
Q Consensus 407 ~~gh~~~Vsa~~~s~d~l~Sgs~D----g~VriWd~~~~el~~~~~v~tL~gHt~~V~sVaFSpDG~~LASgS~D----- 477 (630)
.........++......++.|+.+ ..+.+||..+.+...+.....-..+...+.. ++++++.||.+
T Consensus 42 ~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-----~~~iyv~GG~~~~~~~ 116 (306)
T 3ii7_A 42 PFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA-----EGKIYTSGGSEVGNSA 116 (306)
T ss_dssp CSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE-----TTEEEEECCBBTTBSC
T ss_pred CCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE-----CCEEEEECCCCCCCcE
Q ss_pred -CcEEEEECcCCceeeeeecccccCcccceEEEEECCCCCEEEEeeC---------CCeeeeecccccccccccccCccc
Q 006825 478 -CVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHL---------DNHLEKKRRGRSINRKSLSLDHMV 547 (630)
Q Consensus 478 -gtIrVWDl~tg~~~~~l~~~~~~gh~~~V~svafSpdg~~lasgs~---------Dg~I~i~~~~~~~~~~s~s~d~~i 547 (630)
..+.+||..+..-... ..-........+...++++++.|+. -..+
T Consensus 117 ~~~~~~~d~~~~~W~~~-----~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~-------------------- 171 (306)
T 3ii7_A 117 LYLFECYDTRTESWHTK-----PSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSC-------------------- 171 (306)
T ss_dssp CCCEEEEETTTTEEEEE-----CCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCE--------------------
T ss_pred eeeEEEEeCCCCceEeC-----CCCcCCcceeEEEEECCEEEEECCCCCCCCcccccceE--------------------
Q ss_pred cccEEEeCCCCceEEeccCCCCE--EEEEEcCCCeEEEEECC-----CcEEEEeCCCCcEEE
Q 006825 548 VPETVFALSDKPICSFQGHLDDV--LDLSWSKSQHLLSSSMD-----KTVRLWHLSSKTCLK 602 (630)
Q Consensus 548 ~~~~Vwdlsgk~l~tL~GHs~~V--~sLafSPd~~LaSgS~D-----gtVrIWDl~tg~~l~ 602 (630)
.+|++....-..+....... .+++...+.+++.|+.+ ..|.+||+.+.+-..
T Consensus 172 ---~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~ 230 (306)
T 3ii7_A 172 ---EVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKM 230 (306)
T ss_dssp ---EEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEE
T ss_pred ---EEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEE
No 338
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=23.89 E-value=6e+02 Score=26.04 Aligned_cols=37 Identities=14% Similarity=0.170 Sum_probs=23.9
Q ss_pred EecccCcCEEEEEEccCCCEEEEEe------------CCCcEEEEECcC
Q 006825 451 EIQAHNGSIWSIKFSLDGRYLASAG------------EDCVIHVWQVVE 487 (630)
Q Consensus 451 tL~gHt~~V~sVaFSpDG~~LASgS------------~DgtIrVWDl~t 487 (630)
.+.+-......|++.|+|..+++++ .+|.|.++|..+
T Consensus 44 ~i~~~~~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~ 92 (355)
T 3sre_A 44 LVKGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNE 92 (355)
T ss_dssp ECTTCCSCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTS
T ss_pred EeCCCCCCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCC
Confidence 3444233445677788886666552 789999999874
No 339
>2p5x_A ASMTL, N-acetylserotonin O-methyltransferase-like protei; structural genomics, structural genomics consortium, unknown function; 2.00A {Homo sapiens}
Probab=23.25 E-value=30 Score=34.01 Aligned_cols=18 Identities=39% Similarity=0.562 Sum_probs=15.6
Q ss_pred cchHHHHHHHHHHhCCCC
Q 006825 77 ISVSERRSRLLREMGLSH 94 (630)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~ 94 (630)
+|=|-||+.||++||+.-
T Consensus 9 AS~SPrR~eLL~~~Gi~f 26 (230)
T 2p5x_A 9 ASASPRRQEILSNAGLRF 26 (230)
T ss_dssp CCCCHHHHHHHHHTTCCC
T ss_pred eCCCHHHHHHHHHCCCCe
Confidence 577899999999999953
No 340
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=21.94 E-value=7.9e+02 Score=26.69 Aligned_cols=173 Identities=11% Similarity=0.106 Sum_probs=93.0
Q ss_pred cEEEEEeCCCCcccceeeeeEecccC----cCEEEEEEccCCCEEEEEe-------CCCcEEEEECcCCceeeeeecccc
Q 006825 431 VRVRQYGKSCKDLTALYKCQEIQAHN----GSIWSIKFSLDGRYLASAG-------EDCVIHVWQVVESERKGELLEKQE 499 (630)
Q Consensus 431 g~VriWd~~~~el~~~~~v~tL~gHt----~~V~sVaFSpDG~~LASgS-------~DgtIrVWDl~tg~~~~~l~~~~~ 499 (630)
..|.-|++.... .++..+.-|. ..|..-..+++.++++-.| -.|.+.+|.++.+.. +. .
T Consensus 125 taVyHWsi~~~s----~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s--Q~----i 194 (494)
T 1bpo_A 125 NAVYHWSMEGES----QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS--QP----I 194 (494)
T ss_dssp SEEEEEESSSSC----CCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCE--EE----E
T ss_pred CeeEEecccCCC----CchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccccc--ch----h
Confidence 468888886422 1334444442 4577778889999877544 246788888865432 22 3
Q ss_pred cCcccceEEEEECCC---CCEEEEeeCC---CeeeeecccccccccccccCccccccEEEeCCCCceEEeccCCCCEEEE
Q 006825 500 DGHLNMLLLANGSPE---PTSLSPKHLD---NHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDL 573 (630)
Q Consensus 500 ~gh~~~V~svafSpd---g~~lasgs~D---g~I~i~~~~~~~~~~s~s~d~~i~~~~Vwdlsgk~l~tL~GHs~~V~sL 573 (630)
.||......+.+... ..+++.+... +.+.+...+.... .......+.-++.-.+ ..-.+--.++
T Consensus 195 eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~------~~~~f~kk~vdv~fpp----e~~~DFPvam 264 (494)
T 1bpo_A 195 EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPT------GNQPFPKKAVDVFFPP----EAQNDFPVAM 264 (494)
T ss_dssp CCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCT------TCCCCCCEEEECCCCT----TSTTCCEEEE
T ss_pred eeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCcc------CCCCccceeeeeeCCc----ccccCceeEE
Confidence 778766655444322 1233333222 3343322221100 0000000111110000 1223445678
Q ss_pred EEcCC-CeEEEEECCCcEEEEeCCCCcEEEEEe-cCCceEEEE--cCCCcEEEE
Q 006825 574 SWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYDISLV--DRLMLRFAY 623 (630)
Q Consensus 574 afSPd-~~LaSgS~DgtVrIWDl~tg~~l~t~~-H~~~V~sVa--s~~~~~lAs 623 (630)
..++. +.+.--..-|.|+++|+.|+.|+..-. -.+.|-..+ ...+..++.
T Consensus 265 qvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~V 318 (494)
T 1bpo_A 265 QISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGV 318 (494)
T ss_dssp EEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEE
T ss_pred EecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEE
Confidence 88888 888888899999999999999998766 444444333 333444443
Done!