BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006826
(630 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 254 bits (648), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 142/342 (41%), Positives = 206/342 (60%), Gaps = 20/342 (5%)
Query: 85 NKILDIKGCIRVFCRVRSFLVTGRRVIHEPVLTELEKVVVRS---GGSKKEFGFDKVFNQ 141
N I D+KG IRV+CR+R + +LT +++ V +K+ +D+VF+
Sbjct: 6 NTIEDMKGKIRVYCRIRPLNEKESSEREKQMLTTVDEFTVEHPWKDDKRKQHIYDRVFDM 65
Query: 142 AASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQ 201
ASQ+D+F + + +++SA+DG+NVC+ AYGQTG+GKTFT+ G PG+ PRA +ELF
Sbjct: 66 RASQDDIFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGHESNPGLTPRATKELFNI 125
Query: 202 AALDNSSSVTFSMS--MLEVYMGSVRDLLAPKPVFKAYEAATRCNLNIQTDAKGTVEIEG 259
D S +FS+ M+E+Y ++ DLL PK +A R L I+ D+KG V +E
Sbjct: 126 LKRD-SKRFSFSLKAYMVELYQDTLVDLLLPK-------SARRLKLEIKKDSKGMVFVEN 177
Query: 260 LTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDALEAKTEVS- 318
+T + I + R +G R S TN+NE SSRSH ++ + I ++++ +T+ +
Sbjct: 178 VTTIPISTLEELRMILERGSERRHVSGTNMNEESSRSHLILSVVI----ESIDLQTQSAA 233
Query: 319 --KLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKRGHVPYRNSKLT 376
KL VDL GSERV K+G+ G L E ++IN SLSAL DVI AL H+PYRN KLT
Sbjct: 234 RGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVIGALSSGNQHIPYRNHKLT 293
Query: 377 QILRDSLGDGSKVLMLVHASPCEEDVGETICSLSFAKRARGI 418
++ DSLG +K LM V+ SP E ++ ET SL +A R R I
Sbjct: 294 MLMSDSLGGNAKTLMFVNVSPAESNLDETYNSLLYASRVRTI 335
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 248 bits (632), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 141/342 (41%), Positives = 202/342 (59%), Gaps = 28/342 (8%)
Query: 89 DIKGCIRVFCRVR-----SFLVTGR---RVIHEPVLTELEKVVVRSGGSKKEFGFDKVFN 140
D+KG IRV+CR+R + R R + E + L K K+ +D+VF+
Sbjct: 2 DMKGKIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWK-----DDKAKQHMYDRVFD 56
Query: 141 QAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFR 200
A+Q+DVF + + +++SA+DG+NVC+ AYGQTG+GKTFT+ G PG+ PRA+ ELFR
Sbjct: 57 GNATQDDVFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFR 116
Query: 201 QAALD-NSSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAATRCNLNIQTDAKGTVEIEG 259
D N S + M+E+Y ++ DLL PK A R L+I+ D+KG V +E
Sbjct: 117 IMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQ-------AKRLKLDIKKDSKGMVSVEN 169
Query: 260 LTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDALEAKTEV-- 317
+T V I + + + +G R T+ T +NE SSRSH ++ + I ++ +T+
Sbjct: 170 VTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVII----ESTNLQTQAIA 225
Query: 318 -SKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKRGHVPYRNSKLT 376
KL VDL GSERV K+G+ G L E ++IN SLSAL DVI+AL H+PYRN KLT
Sbjct: 226 RGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLT 285
Query: 377 QILRDSLGDGSKVLMLVHASPCEEDVGETICSLSFAKRARGI 418
++ DSLG +K LM V+ SP E ++ ET SL++A R R I
Sbjct: 286 MLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSI 327
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 246 bits (627), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 146/346 (42%), Positives = 194/346 (56%), Gaps = 36/346 (10%)
Query: 91 KGCIRVFCRVR----------------SFLVTGRRVIHEPVLTELEKVVVRSGGSKKEFG 134
KG IRV RVR +F +IH + G F
Sbjct: 3 KGNIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIH-----------LLHKGKPVSFE 51
Query: 135 FDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRA 194
DKVF+ ASQ+DVF EV+ ++ S +DG NVC+ AYGQTG GKT+TM+GT++ PGI RA
Sbjct: 52 LDKVFSPQASQQDVFQEVQALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQRA 111
Query: 195 LEELFRQAALDNSS-SVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAATRCNLNIQTDAKG 253
L+ LF + S T ++S E+Y +RDLL +P + + + D G
Sbjct: 112 LQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKEP-------QEKLEIRLCPDGSG 164
Query: 254 TVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDALEA 313
+ + GLTE Q+ + G R+T +TN+NE SSRSH L+ +T+ R D
Sbjct: 165 QLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTV-RGVDCSTG 223
Query: 314 KTEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKRGHVPYRNS 373
KL +VDL GSERV K+GA G L E + IN SLSAL DVIAALR ++GHVP+RNS
Sbjct: 224 LRTTGKLNLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQGHVPFRNS 283
Query: 374 KLTQILRDSLGDGSKVLMLVHASPCEEDVGETICSLSFAKRARGIE 419
KLT +L+DSL SK LM+V SP E++ ET+ SL FA+R R +E
Sbjct: 284 KLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSVE 329
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 209 bits (532), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 119/313 (38%), Positives = 192/313 (61%), Gaps = 20/313 (6%)
Query: 124 VRSGGSKKEFGFDKVFNQAASQEDVF-VEVEPILRSALDGHNVCVLAYGQTGTGKTFTMD 182
V S ++ F FD+VF+ + Q D+F ++P + L+G+N V AYGQTG GK++TM
Sbjct: 40 VDSKEAQGSFTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMM 99
Query: 183 GTS-DQP---GIVPRALEELFRQAALDNSSSVTFSM--SMLEVYMGSVRDLLAPKPVFKA 236
GTS D P G++PR +E++F + L +++++ +++ S +E+YM +RDLLAP+
Sbjct: 100 GTSIDDPDGRGVIPRIVEQIF-TSILSSAANIEYTVRVSYMEIYMERIRDLLAPQ----- 153
Query: 237 YEAATRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRS 296
NL + + V ++GL E+ + + +G R+ + TN+N+ SSRS
Sbjct: 154 -----NDNLPVHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRS 208
Query: 297 HCLMRITIFRHGDALEAKTEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALAD 356
H + ITI + + + +L++VDL GSE+V KTGA+GQTL+E + IN SLSAL
Sbjct: 209 HSIFVITITQK-NVETGSAKSGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGM 267
Query: 357 VIAALRR-KRGHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVGETICSLSFAKRA 415
VI AL K HVPYR+SKLT+IL++SLG S+ ++++ SP + ET+ +L F RA
Sbjct: 268 VINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRA 327
Query: 416 RGIESNRELSEDL 428
+ I++ +++ +L
Sbjct: 328 KSIKNKAKVNAEL 340
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 204 bits (518), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 124/343 (36%), Positives = 190/343 (55%), Gaps = 33/343 (9%)
Query: 85 NKILDIKGCIRVFCRVRSFLVTGRR------VIHEPVLTELEKV--VVRSGGSKKEFGFD 136
N ++D++G IRVFCR+R L + H+ EL+ + +S ++ F FD
Sbjct: 60 NTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFD 119
Query: 137 KVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRALE 196
+VF+ +SQ D+F V P+++SALDG+N+C+ AYGQTG+GKT+TMDG + G++PR ++
Sbjct: 120 QVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVD 179
Query: 197 ELF------RQAALDNSSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAATRCNLNIQTD 250
LF R + TF LE+Y + DLL+ + K E + + +
Sbjct: 180 LLFDSIRGYRNLGWEYEIKATF----LEIYNEVLYDLLSNEQ--KDME------IRMAKN 227
Query: 251 AKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIF-RHGD 309
K + + +TE + D R + + R+T+ T NE SSRSH + ++ + RH +
Sbjct: 228 NKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAE 287
Query: 310 ALEAKTEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKRGHVP 369
E V + +VDL GSE + T + E + IN SLS L +VI AL +K+ H+P
Sbjct: 288 KQEIS--VGSINLVDLAGSE----SPKTSTRMTETKNINRSLSELTNVILALLQKQDHIP 341
Query: 370 YRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVGETICSLSFA 412
YRNSKLT +L SLG SK LM ++ SP ++ E++ SL FA
Sbjct: 342 YRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFA 384
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 203 bits (517), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 124/343 (36%), Positives = 190/343 (55%), Gaps = 33/343 (9%)
Query: 85 NKILDIKGCIRVFCRVRSFLVTGRR------VIHEPVLTELEKV--VVRSGGSKKEFGFD 136
N ++D++G IRVFCR+R L + H+ EL+ + +S ++ F FD
Sbjct: 46 NTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFD 105
Query: 137 KVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRALE 196
+VF+ +SQ D+F V P+++SALDG+N+C+ AYGQTG+GKT+TMDG + G++PR ++
Sbjct: 106 QVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVD 165
Query: 197 ELF------RQAALDNSSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAATRCNLNIQTD 250
LF R + TF LE+Y + DLL+ + K E + + +
Sbjct: 166 LLFDSIRGYRNLGWEYEIKATF----LEIYNEVLYDLLSNEQ--KDME------IRMAKN 213
Query: 251 AKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIF-RHGD 309
K + + +TE + D R + + R+T+ T NE SSRSH + ++ + RH +
Sbjct: 214 NKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAE 273
Query: 310 ALEAKTEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKRGHVP 369
E V + +VDL GSE + T + E + IN SLS L +VI AL +K+ H+P
Sbjct: 274 KQEIS--VGSINLVDLAGSE----SPKTSTRMTETKNINRSLSELTNVILALLQKQDHIP 327
Query: 370 YRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVGETICSLSFA 412
YRNSKLT +L SLG SK LM ++ SP ++ E++ SL FA
Sbjct: 328 YRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFA 370
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 202 bits (515), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 126/332 (37%), Positives = 186/332 (56%), Gaps = 30/332 (9%)
Query: 105 VTGRRVIHEPVLTELEKVVVRSGGSKKEFGFDKVF--------NQAASQEDVFVEV-EPI 155
V +VI PV T L K R G K F +D F + A Q+ VF + E I
Sbjct: 27 VDANKVILNPVNTNLSKGDAR--GQPKVFAYDHCFWSMDESVKEKYAGQDIVFKCLGENI 84
Query: 156 LRSALDGHNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQAALDNSSSVTF--S 213
L++A DG+N C+ AYGQTG+GK++TM GT+DQPG++PR LF + + + +F
Sbjct: 85 LQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPRLCSGLFERTQKEENEEQSFKVE 144
Query: 214 MSMLEVYMGSVRDLLAPKPVFKAYEAATRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARW 273
+S +E+Y VRDLL PK +R L ++ + ++GL+++ + +
Sbjct: 145 VSYMEIYNEKVRDLLDPK--------GSRQTLKVREHSVLGPYVDGLSKLAVTSYKDIES 196
Query: 274 WYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDALEAKT---EVSKLWMVDLGGSER 330
++G + R+ + TN+NE SSRSH + +IT+ +++ T +V KL +VDL GSER
Sbjct: 197 LMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGTSGEKVGKLSLVDLAGSER 256
Query: 331 VLKTGATGQTLDEGRAINLSLSALADVIAAL------RRKRGHVPYRNSKLTQILRDSLG 384
KTGA G L EG IN SL+ L VI+AL + K VPYR+S LT +L+DSLG
Sbjct: 257 ATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDSLG 316
Query: 385 DGSKVLMLVHASPCEEDVGETICSLSFAKRAR 416
SK M+ SP ++ ET+ +L +A RA+
Sbjct: 317 GNSKTAMVATVSPAADNYDETLSTLRYADRAK 348
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 201 bits (512), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 123/343 (35%), Positives = 190/343 (55%), Gaps = 33/343 (9%)
Query: 85 NKILDIKGCIRVFCRVRSFLVTGRR------VIHEPVLTELEKV--VVRSGGSKKEFGFD 136
N ++D++G IRVFCR+R L + H+ EL+ + +S ++ F FD
Sbjct: 49 NTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFD 108
Query: 137 KVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRALE 196
+VF+ +SQ D+F V P+++SALDG+N+C+ AYGQ+G+GKT+TMDG + G++PR ++
Sbjct: 109 QVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQSGSGKTYTMDGVPESVGVIPRTVD 168
Query: 197 ELF------RQAALDNSSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAATRCNLNIQTD 250
LF R + TF LE+Y + DLL+ + K E + + +
Sbjct: 169 LLFDSIRGYRNLGWEYEIKATF----LEIYNEVLYDLLSNEQ--KDME------IRMAKN 216
Query: 251 AKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIF-RHGD 309
K + + +TE + D R + + R+T+ T NE SSRSH + ++ + RH +
Sbjct: 217 NKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAE 276
Query: 310 ALEAKTEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKRGHVP 369
E V + +VDL GSE + T + E + IN SLS L +VI AL +K+ H+P
Sbjct: 277 KQEIS--VGSINLVDLAGSE----SPKTSTRMTETKNINRSLSELTNVILALLQKQDHIP 330
Query: 370 YRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVGETICSLSFA 412
YRNSKLT +L SLG SK LM ++ SP ++ E++ SL FA
Sbjct: 331 YRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFA 373
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 201 bits (511), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 123/343 (35%), Positives = 189/343 (55%), Gaps = 33/343 (9%)
Query: 85 NKILDIKGCIRVFCRVRSFLVTGRR------VIHEPVLTELEKV--VVRSGGSKKEFGFD 136
N ++D++G IRVFCR+R L + H+ EL+ + +S ++ F FD
Sbjct: 49 NTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFD 108
Query: 137 KVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRALE 196
+VF+ +SQ D+F V P+++SALDG+N+C+ AYGQTG+GKT+TMDG + G++PR ++
Sbjct: 109 QVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVD 168
Query: 197 ELF------RQAALDNSSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAATRCNLNIQTD 250
LF R + TF LE+Y + DLL+ + K E + + +
Sbjct: 169 LLFDSIRGYRNLGWEYEIKATF----LEIYNEVLYDLLSNEQ--KDME------IRMAKN 216
Query: 251 AKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIF-RHGD 309
K + + +TE + D R + + R+T+ T NE SSRSH + ++ + RH +
Sbjct: 217 NKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAE 276
Query: 310 ALEAKTEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKRGHVP 369
E V + +VDL GSE + T + E + I SLS L +VI AL +K+ H+P
Sbjct: 277 KQE--ISVGSINLVDLAGSE----SPKTSTRMTETKNIKRSLSELTNVILALLQKQDHIP 330
Query: 370 YRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVGETICSLSFA 412
YRNSKLT +L SLG SK LM ++ SP ++ E++ SL FA
Sbjct: 331 YRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFA 373
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 201 bits (510), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 123/343 (35%), Positives = 189/343 (55%), Gaps = 33/343 (9%)
Query: 85 NKILDIKGCIRVFCRVRSFLVTGRR------VIHEPVLTELEKV--VVRSGGSKKEFGFD 136
N ++D++ IRVFCR+R L + H+ EL+ + +S ++ F FD
Sbjct: 52 NTVMDLRDNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFD 111
Query: 137 KVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRALE 196
+VF+ +SQ D+F V P+++SALDG+N+C+ AYGQTG+GKT+TMDG + G++PR ++
Sbjct: 112 QVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVD 171
Query: 197 ELF------RQAALDNSSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAATRCNLNIQTD 250
LF R + TF LE+Y + DLL+ + K E + + +
Sbjct: 172 LLFDSIRGYRNLGWEYEIKATF----LEIYNEVLYDLLSNEQ--KDME------IRMAKN 219
Query: 251 AKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIF-RHGD 309
K + + +TE + D R + + R+T+ T NE SSRSH + ++ + RH +
Sbjct: 220 NKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAE 279
Query: 310 ALEAKTEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKRGHVP 369
E V + +VDL GSE + T + E + IN SLS L +VI AL +K+ H+P
Sbjct: 280 KQE--ISVGSINLVDLAGSE----SPKTSTRMTETKNINRSLSELTNVILALLQKQDHIP 333
Query: 370 YRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVGETICSLSFA 412
YRNSKLT +L SLG SK LM ++ SP ++ E++ SL FA
Sbjct: 334 YRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFA 376
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 194 bits (493), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 130/341 (38%), Positives = 187/341 (54%), Gaps = 27/341 (7%)
Query: 94 IRVFCRVRSFLVTGRRVIHEPVLTELEKVVVR-SGGSKKEFGFDKVFNQAASQEDVFVE- 151
+RV RVR L H+ L ++E + R + G + FGF V + A QE V+
Sbjct: 13 VRVALRVRPLLPKELLHGHQSCL-QVEPGLGRVTLGRDRHFGFHVVLAEDAGQEAVYQAC 71
Query: 152 VEPILRSALDGHNVCVLAYGQTGTGKTFTMDGTS------DQPGIVPRALEELFRQAALD 205
V+P+L + +G N V AYGQTG+GKT+TM S D+ GIVPRA+ E F+ +
Sbjct: 72 VQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLIDEN 131
Query: 206 NSSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAATRCNLNIQTDAKGTVEIEGLTEVQI 265
+ +S LEVY RDLL A+R ++ ++ D +G V + G+ EV +
Sbjct: 132 DLLDCLVHVSYLEVYKEEFRDLLE-------VGTASR-DIQLREDERGNVVLCGVKEVDV 183
Query: 266 PDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDA-------LEAKTEVS 318
+ G R T T++N SSRSH + +T+ + G A + VS
Sbjct: 184 EGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPGQLLVS 243
Query: 319 KLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAAL---RRKRGHVPYRNSKL 375
K VDL GSERVLKTG+TG+ L E IN SL AL +VI+AL +R+ H+PYR+SK+
Sbjct: 244 KFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSKI 303
Query: 376 TQILRDSLGDGSKVLMLVHASPCEEDVGETICSLSFAKRAR 416
T+IL+DSLG +K +M+ SP D ET+ +L++A RA+
Sbjct: 304 TRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 193 bits (490), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 121/326 (37%), Positives = 183/326 (56%), Gaps = 20/326 (6%)
Query: 109 RVIHEPVLTELEKVVVRSGGSKKEFGFDKVFNQAASQEDVF-VEVEPILRSALDGHNVCV 167
+VI +P E EK ++ + F FD V++Q + +F +P++ + L+G N +
Sbjct: 36 QVIVDP--PEQEKSATQAKKVPRTFTFDAVYDQTSCNYGIFQASFKPLIDAVLEGFNSTI 93
Query: 168 LAYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQAALDNSSSVTFSM--SMLEVYMGSVR 225
AYGQTG GKT+TM G ++PG +P + + LF A +SS+ F + S LE+Y +R
Sbjct: 94 FAYGQTGAGKTWTMGGNKEEPGAIPNSFKHLF-DAINSSSSNQNFLVIGSYLELYNEEIR 152
Query: 226 DLLAPKPVFKAYEAATRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTS 285
DL+ L ++ D + ++GL+ ++ + +KG R +
Sbjct: 153 DLIK-----------NNTKLPLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVA 201
Query: 286 WTNVNEASSRSHCLMRITIFRHGDALEAK--TEVSKLWMVDLGGSERVLKTGATGQTLDE 343
T +N+ SSRSH + + I + +E K V KL +VDL GSER KTGATG+TL E
Sbjct: 202 ATQMNDTSSRSHSIFMVRI-ECSEVIENKEVIRVGKLNLVDLAGSERQSKTGATGETLVE 260
Query: 344 GRAINLSLSALADVIAALRRKRGHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVG 403
G INLSLSAL VI+ L H+PYR+SKLT++L+DSLG SK LM + SP +
Sbjct: 261 GAKINLSLSALGLVISKLVEGATHIPYRDSKLTRLLQDSLGGNSKTLMCANISPASTNYD 320
Query: 404 ETICSLSFAKRARGIESNRELSEDLK 429
ET+ +L +A RA+ I++ ++ED K
Sbjct: 321 ETMSTLRYADRAKQIKNKPRINEDPK 346
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 192 bits (489), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 118/342 (34%), Positives = 187/342 (54%), Gaps = 31/342 (9%)
Query: 89 DIKGC-IRVFCRVRSFLVTGRRVIHEPVLTELEKVVVRSGG------SKKEFGFDKVFNQ 141
D+ C I+V CR R ++E + +K + + G + K + FD+VF
Sbjct: 3 DLAECNIKVMCRFRP--------LNESEVNRGDKYIAKFQGEDTVVIASKPYAFDRVFQS 54
Query: 142 AASQEDVFVE-VEPILRSALDGHNVCVLAYGQTGTGKTFTMDGTSDQP---GIVPRALEE 197
+ SQE V+ + + I++ L+G+N + AYGQT +GKT TM+G P GI+PR +++
Sbjct: 55 STSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQD 114
Query: 198 LFRQ-AALDNSSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAATRCNLNIQTDAKGTVE 256
+F ++D + +S E+Y+ +RDLL ++ NL++ D
Sbjct: 115 IFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLD----------VSKTNLSVHEDKNRVPY 164
Query: 257 IEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDALEAKTE 316
++G TE + + ++G+ R + TN+NE SSRSH + I + + E K
Sbjct: 165 VKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLS 224
Query: 317 VSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKRGHVPYRNSKLT 376
KL++VDL GSE+V KTGA G LDE + IN SLSAL +VI+AL +VPYR+SK+T
Sbjct: 225 -GKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMT 283
Query: 377 QILRDSLGDGSKVLMLVHASPCEEDVGETICSLSFAKRARGI 418
+IL+DSLG + +++ SP + ET +L F +RA+ I
Sbjct: 284 RILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 325
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 192 bits (489), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 118/344 (34%), Positives = 189/344 (54%), Gaps = 31/344 (9%)
Query: 89 DIKGC-IRVFCRVRSFLVTGRRVIHEPVLTELEKVVVRSGG------SKKEFGFDKVFNQ 141
D+ C I+V CR R ++E + +K + + G + K + FD+VF
Sbjct: 3 DLAECNIKVMCRFRP--------LNESEVNRGDKYIAKFQGEDTVVIASKPYAFDRVFQS 54
Query: 142 AASQEDVFVE-VEPILRSALDGHNVCVLAYGQTGTGKTFTMDGTSDQP---GIVPRALEE 197
+ SQE V+ + + I++ L+G+N + AYGQT +GKT TM+G P GI+PR +++
Sbjct: 55 STSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQD 114
Query: 198 LFRQ-AALDNSSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAATRCNLNIQTDAKGTVE 256
+F ++D + +S E+Y+ +RDLL ++ NL++ D
Sbjct: 115 IFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLD----------VSKTNLSVHEDKNRVPY 164
Query: 257 IEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDALEAKTE 316
++G TE + + ++G+ R + TN+NE SSRSH + I + + E K
Sbjct: 165 VKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLS 224
Query: 317 VSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKRGHVPYRNSKLT 376
KL++VDL GSE+V KTGA G LDE + IN SLSAL +VI+AL +VPYR+SK+T
Sbjct: 225 -GKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMT 283
Query: 377 QILRDSLGDGSKVLMLVHASPCEEDVGETICSLSFAKRARGIES 420
+IL+DSLG + +++ SP + ET +L F +RA+ I++
Sbjct: 284 RILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTIKN 327
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 192 bits (487), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 117/306 (38%), Positives = 170/306 (55%), Gaps = 16/306 (5%)
Query: 131 KEFGFDKVFNQAASQEDVFVEV-EPILRSALDGHNVCVLAYGQTGTGKTFTMDGTSDQP- 188
K F FD V++ A Q +++ E P++ S L G N + AYGQTGTGKT+TM+G P
Sbjct: 68 KTFTFDAVYDWNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPE 127
Query: 189 --GIVPRALEELFRQAALDNSSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAATRCNLN 246
G++P + + +F + + S LE+Y +RDLL+ + R L
Sbjct: 128 KRGVIPNSFDHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSK-------DQTKRLELK 180
Query: 247 IQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFR 306
+ D V ++ L+ + N G + RS TN+NE SSRSH + ITI
Sbjct: 181 ERPDT--GVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIEC 238
Query: 307 HGDALEAKTE--VSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAAL-RR 363
L+ + V KL +VDL GSER KTGA G+ L E INLSLSAL +VI+AL
Sbjct: 239 SEVGLDGENHIRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDG 298
Query: 364 KRGHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVGETICSLSFAKRARGIESNRE 423
K H+PYR+SKLT++L+DSLG +K +M+ + P +V ET+ +L +A RA+ I++
Sbjct: 299 KSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIKNKPR 358
Query: 424 LSEDLK 429
++ED K
Sbjct: 359 VNEDPK 364
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 191 bits (484), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 116/338 (34%), Positives = 185/338 (54%), Gaps = 30/338 (8%)
Query: 94 IRVFCRVRSFLVTGRRVIHEPVLTELEKVVVRSGG------SKKEFGFDKVFNQAASQED 147
I+V CR R ++E + +K V + G + K + FD+VF + SQE
Sbjct: 9 IKVMCRFRP--------LNESEVNRGDKYVAKFQGEDTVMIASKPYAFDRVFQSSTSQEQ 60
Query: 148 VFVE-VEPILRSALDGHNVCVLAYGQTGTGKTFTMDGTSDQP---GIVPRALEELFRQ-A 202
V+ + + I++ L+G+N + AYGQT +GK TM+G P GI+PR ++++F
Sbjct: 61 VYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKNHTMEGKLHDPEGMGIIPRIVQDIFNYIY 120
Query: 203 ALDNSSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAATRCNLNIQTDAKGTVEIEGLTE 262
++D + +S E+Y+ +RDLL ++ NL++ D ++G TE
Sbjct: 121 SMDENLEFHIKVSYFEIYLDKIRDLLD----------VSKTNLSVHEDKNRVPYVKGCTE 170
Query: 263 VQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDALEAKTEVSKLWM 322
+ + ++G+ R + TN+NE SSRSH + I + + E K KL++
Sbjct: 171 RFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLS-GKLYL 229
Query: 323 VDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKRGHVPYRNSKLTQILRDS 382
VDL GSE+V KTGA G LDE + IN SLSAL +VI+AL +VPYR+SK+T+IL+DS
Sbjct: 230 VDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDS 289
Query: 383 LGDGSKVLMLVHASPCEEDVGETICSLSFAKRARGIES 420
LG + +++ SP + ET +L F +RA+ I++
Sbjct: 290 LGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTIKN 327
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 190 bits (483), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 127/353 (35%), Positives = 191/353 (54%), Gaps = 29/353 (8%)
Query: 90 IKGCIRVFCRVRSFLVTG--------RRVIHEPVLTEL------EKVVVRS---GGSKKE 132
+KG IRVFCR+R+ + +I ++ E V+ R+ S
Sbjct: 372 LKGNIRVFCRIRNVSSSSSSSSSSSSEDIIQYEAPQDINDESKQELVITRNINNNFSNLR 431
Query: 133 FGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMDGTSDQPGIVP 192
F FDK+F + S + VF E+ +++ +LDG NVCV AYGQTG+GKTFTM ++ G++P
Sbjct: 432 FLFDKIFEREQSNDLVFEELSQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHPTN--GMIP 489
Query: 193 RALEELFR--QAALDNSSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAATRCNLNIQTD 250
+L+++F + + S T +E+Y ++ DLL PK + T+ + D
Sbjct: 490 LSLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIVDLLNPK-----IDPNTKYEIK-HDD 543
Query: 251 AKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDA 310
G + ++ + I +A N+ + RST+ T N+ SSRSH + I + + ++
Sbjct: 544 IAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQGY-NS 602
Query: 311 LEAKTEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKRG-HVP 369
L ++ L ++DL GSER+ + A G L E +AIN SLS L DVI +L K G HVP
Sbjct: 603 LTKESSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDGSHVP 662
Query: 370 YRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVGETICSLSFAKRARGIESNR 422
YRNSKLT +L+ SLG SK LM V+ SP +D+ ETI SL FA + N+
Sbjct: 663 YRNSKLTYLLKHSLGGNSKTLMFVNISPLTKDLNETINSLRFATKVNNTRINK 715
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 188 bits (478), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 128/341 (37%), Positives = 186/341 (54%), Gaps = 27/341 (7%)
Query: 94 IRVFCRVRSFLVTGRRVIHEPVLTELEKVVVR-SGGSKKEFGFDKVFNQAASQEDVFVE- 151
+RV RVR L H+ L ++E + R + G + FGF V + A QE V+
Sbjct: 13 VRVALRVRPLLPKELLHGHQSCL-QVEPGLGRVTLGRDRHFGFHVVLAEDAGQEAVYQAC 71
Query: 152 VEPILRSALDGHNVCVLAYGQTGTGKTFTMDGTS------DQPGIVPRALEELFRQAALD 205
V+P+L + +G N V AYGQTG+GKT+TM S D+ GIVPRA+ E F+ +
Sbjct: 72 VQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLIDEN 131
Query: 206 NSSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAATRCNLNIQTDAKGTVEIEGLTEVQI 265
+ +S LEVY RDLL A+R ++ ++ D +G V + G+ EV +
Sbjct: 132 DLLDCLVHVSYLEVYKEEFRDLLE-------VGTASR-DIQLREDERGNVVLCGVKEVDV 183
Query: 266 PDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDA-------LEAKTEVS 318
+ G R T T++N SSRSH + +T+ + G A + VS
Sbjct: 184 EGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLKQRGRAPSRLPRPAPGQLLVS 243
Query: 319 KLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAAL---RRKRGHVPYRNSKL 375
K VDL GSERVLKTG+TG+ E IN SL AL +VI+AL +R+ ++PYR+SK+
Sbjct: 244 KFHFVDLAGSERVLKTGSTGELRKESIQINSSLLALGNVISALGDPQRRGSNIPYRDSKI 303
Query: 376 TQILRDSLGDGSKVLMLVHASPCEEDVGETICSLSFAKRAR 416
T+IL+DSLG +K +M+ SP D ET+ +L++A RA+
Sbjct: 304 TRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 187 bits (475), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 127/358 (35%), Positives = 192/358 (53%), Gaps = 34/358 (9%)
Query: 94 IRVFCRVRSFLVTGRR------VIHEPVLTELEKVVVRSGG-----SKKEFGFDKVFNQA 142
I+V RVR F + R+ V +PV E V VR+GG S+K + FD VF +
Sbjct: 19 IQVVVRVRPFNLAERKASAHSIVESDPVRKE---VSVRTGGLADKSSRKTYTFDMVFGAS 75
Query: 143 ASQEDVFVEV-EPILRSALDGHNVCVLAYGQTGTGKTFTMDGT---------SDQP--GI 190
Q DV+ V PIL + G+N + AYGQTGTGKTFTM+G + P GI
Sbjct: 76 TKQIDVYRSVVAPILDEVIMGYNATIFAYGQTGTGKTFTMEGERSPNEEYCWEEDPLAGI 135
Query: 191 VPRALEELFRQAALDNSSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAATRCNLNIQTD 250
+PR L ++F + DN + + +S+LE+Y + DLL P + + + R +
Sbjct: 136 IPRTLHQIFEKLT-DNGTEFSVKVSLLEIYNEELFDLLNP-----SSDVSERLQMFDDPR 189
Query: 251 AKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDA 310
K V I+GL E+ + + + KG R+T+ T +N SSRSH + +TI
Sbjct: 190 NKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETT 249
Query: 311 LEAK--TEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKRGHV 368
++ + ++ KL +VDL GSE + ++GA + E IN SL L VI AL + HV
Sbjct: 250 IDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHV 309
Query: 369 PYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVGETICSLSFAKRARGIESNRELSE 426
PYR SKLT+IL+DSLG ++ ++ SP ++ ET+ +L +A RA+ I + E+++
Sbjct: 310 PYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 187 bits (475), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 126/353 (35%), Positives = 197/353 (55%), Gaps = 28/353 (7%)
Query: 94 IRVFCRVRSFLVTGRRVIHEPVL---TELEKVVVRSGGSKKEFGFDKVFNQAASQEDVFV 150
I+V CR R + + + V+ +E+ + G K + FDKVF ASQE V+
Sbjct: 13 IKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIAG--KVYLFDKVFKPNASQEKVYN 70
Query: 151 EV-EPILRSALDGHNVCVLAYGQTGTGKTFTMDGT---SDQPGIVPRALEELFRQ-AALD 205
E + I+ L G+N + AYGQT +GKT TM+G S + GI+PR + ++F A++
Sbjct: 71 EAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHIYAME 130
Query: 206 NSSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAATRCNLNIQTDAKGTVEIEGLTEVQI 265
+ +S E+YM +RDLL ++ NL++ D ++G TE +
Sbjct: 131 VNLEFHIKVSYYEIYMDKIRDLLD----------VSKVNLSVHEDKNRVPYVKGATERFV 180
Query: 266 PDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDALEAKTEVS-KLWMVD 324
+G+ R + TN+NE SSRSH + I + + + LE + ++S KL++VD
Sbjct: 181 SSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQ--ENLENQKKLSGKLYLVD 238
Query: 325 LGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRR-KRGHVPYRNSKLTQILRDSL 383
L GSE+V KTGA G LDE + IN SLSAL +VI+AL + H+PYR+SKLT+IL++SL
Sbjct: 239 LAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESL 298
Query: 384 GDGSKVLMLVHASPCEEDVGETICSLSFAKRARGIES----NRELSEDLKKRR 432
G ++ +++ SP + ET +L F +RA+ +++ N EL+ + KRR
Sbjct: 299 GGNARTTIVICCSPASFNESETKSTLDFGRRAKTVKNVVCVNEELTAEEWKRR 351
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 184 bits (468), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 128/376 (34%), Positives = 188/376 (50%), Gaps = 48/376 (12%)
Query: 93 CIRVFCRVRSFLVTGRRVIHEPVLT---ELEKVVVRS-----GGSKKEFGFDKVFNQAAS 144
++V R R HE +LT +L +V +R+ G K F FD V++ ++
Sbjct: 22 ALKVVARCRPLSRKEEAAGHEQILTMDVKLGQVTLRNPRAAPGELPKTFTFDAVYDASSK 81
Query: 145 QEDVFVE-VEPILRSALDGHNVCVLAYGQTGTGKTFTMDGTSDQP---GIVPRALEELFR 200
Q D++ E V P++ S L G N V AYGQTGTGKT+TM GT +P G++P A E +F
Sbjct: 82 QADLYDETVRPLIDSVLQGFNGTVFAYGQTGTGKTYTMQGTWVEPELRGVIPNAFEHIFT 141
Query: 201 QAALDNSSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAATRCNLNIQTDAKGTVEIEGL 260
+ + S LE+Y +RDLL+ +P + L ++ + + V I+ L
Sbjct: 142 HISRSQNQQYLVRASYLEIYQEEIRDLLSKEPGKR---------LELKENPETGVYIKDL 192
Query: 261 TEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITI--FRHGDALEAKTEVS 318
+ + + N G + R+ T++NE SSRSH + IT+ G + V
Sbjct: 193 SSFVTKNVKEIEHVMNLGNQTRAVGSTHMNEVSSRSHAIFIITVECSERGSDGQDHIRVG 252
Query: 319 KLWMVDLGGSERVLKTG---ATGQTL---------------------DEGRAINLSLSAL 354
KL +VDL GSER K G A G E INLSLSAL
Sbjct: 253 KLNLVDLAGSERQNKAGPNTAGGAATPSSGGGGGGGGSGGGAGGERPKEASKINLSLSAL 312
Query: 355 ADVIAALRRKRG-HVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVGETICSLSFAK 413
+VIAAL R H+PYR+SKLT++L+DSLG +K +M+ P E++ +L FA
Sbjct: 313 GNVIAALAGNRSTHIPYRDSKLTRLLQDSLGGNAKTIMVATLGPASHSYDESLSTLRFAN 372
Query: 414 RARGIESNRELSEDLK 429
RA+ I++ ++ED K
Sbjct: 373 RAKNIKNKPRVNEDPK 388
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 184 bits (467), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 127/360 (35%), Positives = 192/360 (53%), Gaps = 34/360 (9%)
Query: 94 IRVFCRVRSFLVTGRR------VIHEPVLTELEKVVVRSGG-----SKKEFGFDKVFNQA 142
I+V R R F + R+ V +PV E V VR+GG S+K + FD VF +
Sbjct: 19 IQVVVRCRPFNLAERKASAHSIVECDPVRKE---VSVRTGGLADKSSRKTYTFDMVFGAS 75
Query: 143 ASQEDVFVEVE-PILRSALDGHNVCVLAYGQTGTGKTFTMDGT---------SDQP--GI 190
Q DV+ V PIL + G+N + AYGQTGTGKTFTM+G + P GI
Sbjct: 76 TKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGI 135
Query: 191 VPRALEELFRQAALDNSSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAATRCNLNIQTD 250
+PR L ++F + DN + + +S+LE+Y + DLL P + + + R +
Sbjct: 136 IPRTLHQIFEKLT-DNGTEFSVKVSLLEIYNEELFDLLNP-----SSDVSERLQMFDDPR 189
Query: 251 AKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDA 310
K V I+GL E+ + + + KG R+T+ T +N SSRSH + +TI
Sbjct: 190 NKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETT 249
Query: 311 LEAK--TEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKRGHV 368
++ + ++ KL +VDL GSE + ++GA + E IN SL L VI AL + HV
Sbjct: 250 IDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHV 309
Query: 369 PYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVGETICSLSFAKRARGIESNRELSEDL 428
PYR SKLT+IL+DSLG ++ ++ SP ++ ET+ +L +A RA+ I + E+++ L
Sbjct: 310 PYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQKL 369
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 183 bits (464), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 126/358 (35%), Positives = 191/358 (53%), Gaps = 34/358 (9%)
Query: 94 IRVFCRVRSFLVTGRR------VIHEPVLTELEKVVVRSGG-----SKKEFGFDKVFNQA 142
I+V R R F + R+ V +PV E V VR+GG S+K + FD VF +
Sbjct: 19 IQVVVRCRPFNLAERKASAHSIVECDPVRKE---VSVRTGGLADKSSRKTYTFDMVFGAS 75
Query: 143 ASQEDVFVEVE-PILRSALDGHNVCVLAYGQTGTGKTFTMDGT---------SDQP--GI 190
Q DV+ V PIL + G+N + AYGQTGTGKTFTM+G + P GI
Sbjct: 76 TKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLDGI 135
Query: 191 VPRALEELFRQAALDNSSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAATRCNLNIQTD 250
+PR L ++F + DN + + +S+LE+Y + DLL P + + + R +
Sbjct: 136 IPRTLHQIFEKLT-DNGTEFSVKVSLLEIYNEELFDLLNP-----SSDVSERLQMFDDPR 189
Query: 251 AKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDA 310
K V I+GL E+ + + + KG R+T+ T +N SSRSH + +TI
Sbjct: 190 NKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETT 249
Query: 311 LEAK--TEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKRGHV 368
++ + ++ KL +VDL GSE + ++GA + E IN SL L VI AL + HV
Sbjct: 250 IDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHV 309
Query: 369 PYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVGETICSLSFAKRARGIESNRELSE 426
PYR SKLT+IL+DSLG ++ ++ SP ++ ET+ +L +A RA+ I + E+++
Sbjct: 310 PYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 183 bits (464), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 126/358 (35%), Positives = 191/358 (53%), Gaps = 34/358 (9%)
Query: 94 IRVFCRVRSFLVTGRR------VIHEPVLTELEKVVVRSGG-----SKKEFGFDKVFNQA 142
I+V R R F + R+ V +PV E V VR+GG S+K + FD VF +
Sbjct: 18 IQVVVRCRPFNLAERKASAHSIVECDPVRKE---VSVRTGGLADKSSRKTYTFDMVFGAS 74
Query: 143 ASQEDVFVEVE-PILRSALDGHNVCVLAYGQTGTGKTFTMDGT---------SDQP--GI 190
Q DV+ V PIL + G+N + AYGQTGTGKTFTM+G + P GI
Sbjct: 75 TKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGI 134
Query: 191 VPRALEELFRQAALDNSSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAATRCNLNIQTD 250
+PR L ++F + DN + + +S+LE+Y + DLL P + + + R +
Sbjct: 135 IPRTLHQIFEKLT-DNGTEFSVKVSLLEIYNEELFDLLNP-----SSDVSERLQMFDDPR 188
Query: 251 AKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDA 310
K V I+GL E+ + + + KG R+T+ T +N SSRSH + +TI
Sbjct: 189 NKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETT 248
Query: 311 LEAK--TEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKRGHV 368
++ + ++ KL +VDL GSE + ++GA + E IN SL L VI AL + HV
Sbjct: 249 IDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHV 308
Query: 369 PYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVGETICSLSFAKRARGIESNRELSE 426
PYR SKLT+IL+DSLG ++ ++ SP ++ ET+ +L +A RA+ I + E+++
Sbjct: 309 PYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 366
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 183 bits (464), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 126/358 (35%), Positives = 191/358 (53%), Gaps = 34/358 (9%)
Query: 94 IRVFCRVRSFLVTGRR------VIHEPVLTELEKVVVRSGG-----SKKEFGFDKVFNQA 142
I+V R R F + R+ V +PV E V VR+GG S+K + FD VF +
Sbjct: 21 IQVVVRCRPFNLAERKASAHSIVECDPVRKE---VSVRTGGLADKSSRKTYTFDMVFGAS 77
Query: 143 ASQEDVFVEVE-PILRSALDGHNVCVLAYGQTGTGKTFTMDGT---------SDQP--GI 190
Q DV+ V PIL + G+N + AYGQTGTGKTFTM+G + P GI
Sbjct: 78 TKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGI 137
Query: 191 VPRALEELFRQAALDNSSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAATRCNLNIQTD 250
+PR L ++F + DN + + +S+LE+Y + DLL P + + + R +
Sbjct: 138 IPRTLHQIFEKLT-DNGTEFSVKVSLLEIYNEELFDLLNP-----SSDVSERLQMFDDPR 191
Query: 251 AKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDA 310
K V I+GL E+ + + + KG R+T+ T +N SSRSH + +TI
Sbjct: 192 NKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETT 251
Query: 311 LEAK--TEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKRGHV 368
++ + ++ KL +VDL GSE + ++GA + E IN SL L VI AL + HV
Sbjct: 252 IDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHV 311
Query: 369 PYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVGETICSLSFAKRARGIESNRELSE 426
PYR SKLT+IL+DSLG ++ ++ SP ++ ET+ +L +A RA+ I + E+++
Sbjct: 312 PYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 369
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 183 bits (464), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 126/358 (35%), Positives = 191/358 (53%), Gaps = 34/358 (9%)
Query: 94 IRVFCRVRSFLVTGRR------VIHEPVLTELEKVVVRSGG-----SKKEFGFDKVFNQA 142
I+V R R F + R+ V +PV E V VR+GG S+K + FD VF +
Sbjct: 19 IQVVVRCRPFNLAERKASAHSIVECDPVRKE---VSVRTGGLADKSSRKTYTFDMVFGAS 75
Query: 143 ASQEDVFVEVE-PILRSALDGHNVCVLAYGQTGTGKTFTMDGT---------SDQP--GI 190
Q DV+ V PIL + G+N + AYGQTGTGKTFTM+G + P GI
Sbjct: 76 TKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGI 135
Query: 191 VPRALEELFRQAALDNSSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAATRCNLNIQTD 250
+PR L ++F + DN + + +S+LE+Y + DLL P + + + R +
Sbjct: 136 IPRTLHQIFEKLT-DNGTEFSVKVSLLEIYNEELFDLLNP-----SSDVSERLQMFDDPR 189
Query: 251 AKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDA 310
K V I+GL E+ + + + KG R+T+ T +N SSRSH + +TI
Sbjct: 190 NKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETT 249
Query: 311 LEAK--TEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKRGHV 368
++ + ++ KL +VDL GSE + ++GA + E IN SL L VI AL + HV
Sbjct: 250 IDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHV 309
Query: 369 PYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVGETICSLSFAKRARGIESNRELSE 426
PYR SKLT+IL+DSLG ++ ++ SP ++ ET+ +L +A RA+ I + E+++
Sbjct: 310 PYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 182 bits (462), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 126/358 (35%), Positives = 191/358 (53%), Gaps = 34/358 (9%)
Query: 94 IRVFCRVRSFLVTGRR------VIHEPVLTELEKVVVRSGG-----SKKEFGFDKVFNQA 142
I+V R R F + R+ V +PV E V VR+GG S+K + FD VF +
Sbjct: 10 IQVVVRCRPFNLAERKASAHSIVECDPVRKE---VSVRTGGLADKSSRKTYTFDMVFGAS 66
Query: 143 ASQEDVFVEVE-PILRSALDGHNVCVLAYGQTGTGKTFTMDGT---------SDQP--GI 190
Q DV+ V PIL + G+N + AYGQTGTGKTFTM+G + P GI
Sbjct: 67 TKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGI 126
Query: 191 VPRALEELFRQAALDNSSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAATRCNLNIQTD 250
+PR L ++F + DN + + +S+LE+Y + DLL P + + + R +
Sbjct: 127 IPRTLHQIFEKLT-DNGTEFSVKVSLLEIYNEELFDLLNP-----SSDVSERLQMFDDPR 180
Query: 251 AKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDA 310
K V I+GL E+ + + + KG R+T+ T +N SSRSH + +TI
Sbjct: 181 NKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETT 240
Query: 311 LEAK--TEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKRGHV 368
++ + ++ KL +VDL GSE + ++GA + E IN SL L VI AL + HV
Sbjct: 241 IDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHV 300
Query: 369 PYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVGETICSLSFAKRARGIESNRELSE 426
PYR SKLT+IL+DSLG ++ ++ SP ++ ET+ +L +A RA+ I + E+++
Sbjct: 301 PYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 358
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 182 bits (462), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 126/358 (35%), Positives = 191/358 (53%), Gaps = 34/358 (9%)
Query: 94 IRVFCRVRSFLVTGRR------VIHEPVLTELEKVVVRSGG-----SKKEFGFDKVFNQA 142
I+V R R F + R+ V +PV E V VR+GG S+K + FD VF +
Sbjct: 19 IQVVVRCRPFNLAERKASAHSIVECDPVRKE---VSVRTGGLADKSSRKTYTFDMVFGAS 75
Query: 143 ASQEDVFVEVE-PILRSALDGHNVCVLAYGQTGTGKTFTMDGT---------SDQP--GI 190
Q DV+ V PIL + G+N + AYGQTGTGKTFTM+G + P GI
Sbjct: 76 TKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEVPLAGI 135
Query: 191 VPRALEELFRQAALDNSSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAATRCNLNIQTD 250
+PR L ++F + DN + + +S+LE+Y + DLL P + + + R +
Sbjct: 136 IPRTLHQIFEKLT-DNGTEFSVKVSLLEIYNEELFDLLNP-----SSDVSERLQMFDDPR 189
Query: 251 AKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDA 310
K V I+GL E+ + + + KG R+T+ T +N SSRSH + +TI
Sbjct: 190 NKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETT 249
Query: 311 LEAK--TEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKRGHV 368
++ + ++ KL +VDL GSE + ++GA + E IN SL L VI AL + HV
Sbjct: 250 IDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHV 309
Query: 369 PYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVGETICSLSFAKRARGIESNRELSE 426
PYR SKLT+IL+DSLG ++ ++ SP ++ ET+ +L +A RA+ I + E+++
Sbjct: 310 PYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 181 bits (459), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 113/334 (33%), Positives = 178/334 (53%), Gaps = 22/334 (6%)
Query: 94 IRVFCRVRSFLVTGRRVIHEPVLT------ELEKVVVRSGGSKKEFGFDKVFNQAASQED 147
+RV R+R F V G +P LE R+ ++ FD + + ++Q+D
Sbjct: 23 VRVAVRLRPF-VDGTAGASDPPCVRGMDSCSLEIANWRNHQETLKYQFDAFYGERSTQQD 81
Query: 148 VFV-EVEPILRSALDGHNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFR----QA 202
++ V+PILR L+G N VLAYG TG GKT TM G+ +QPG++PRAL +L + +
Sbjct: 82 IYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRALMDLLQLTREEG 141
Query: 203 ALDNSSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAATRCNLNIQTDAKGTVEIEGLTE 262
A +++ +MS LE+Y V DLL P +L I+ D +G + I GL++
Sbjct: 142 AEGRPWALSVTMSYLEIYQEKVLDLLDP----------ASGDLVIREDCRGNILIPGLSQ 191
Query: 263 VQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDALEAKTEVSKLWM 322
I F + R R+ T +N+ SSRSH ++ + + + + KL++
Sbjct: 192 KPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAPFRQREGKLYL 251
Query: 323 VDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKRGHVPYRNSKLTQILRDS 382
+DL GSE +TG G L E AIN SL L V+ AL + VPYR+SKLT++L+DS
Sbjct: 252 IDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLPRVPYRDSKLTRLLQDS 311
Query: 383 LGDGSKVLMLVHASPCEEDVGETICSLSFAKRAR 416
LG + +++ + +P +T+ +L+FA R++
Sbjct: 312 LGGSAHSILIANIAPERRFYLDTVSALNFAARSK 345
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 181 bits (458), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 125/350 (35%), Positives = 186/350 (53%), Gaps = 34/350 (9%)
Query: 94 IRVFCRVRSFLVTGRR------VIHEPVLTELEKVVVRSGG-----SKKEFGFDKVFNQA 142
I+V R R F + R+ V +PV E V VR+GG S+K + FD VF +
Sbjct: 4 IQVVVRCRPFNLAERKASAHSIVECDPVRKE---VSVRTGGLADKSSRKTYTFDMVFGAS 60
Query: 143 ASQEDVFVEVE-PILRSALDGHNVCVLAYGQTGTGKTFTMDGT---------SDQP--GI 190
Q DV+ V PIL + G+N + AYGQTGTGKTFTM+G + P GI
Sbjct: 61 TKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGI 120
Query: 191 VPRALEELFRQAALDNSSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAATRCNLNIQTD 250
+PR L ++F + DN + + +S+LE+Y + DLL P + + + R +
Sbjct: 121 IPRTLHQIFEKLT-DNGTEFSVKVSLLEIYNEELFDLLNP-----SSDVSERLQMFDDPR 174
Query: 251 AKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDA 310
K V I+GL E+ + + + KG R+T+ T +N SSRSH + +TI
Sbjct: 175 NKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETT 234
Query: 311 LEAK--TEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKRGHV 368
++ + ++ KL +VDL GSE + ++GA + E IN SL L VI AL + HV
Sbjct: 235 IDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHV 294
Query: 369 PYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVGETICSLSFAKRARGI 418
PYR SKLT+IL+DSLG ++ ++ SP ++ ET+ +L +A RA+ I
Sbjct: 295 PYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 344
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 179 bits (455), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 133/360 (36%), Positives = 186/360 (51%), Gaps = 42/360 (11%)
Query: 90 IKGCIRVFCRVRSFLV------TGRRVI--------HEPVLTELEKVVVRSG-------- 127
+KG IRVFCRVR L G + P L + R G
Sbjct: 20 LKGNIRVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAP 79
Query: 128 GSKKEFGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMDG-TSD 186
+ +F FD+VF + Q++VF E+ +++SALDG+ VC+ AYGQTG+GKTFTM+G
Sbjct: 80 PPRHDFSFDRVFPPGSGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGG 139
Query: 187 QP---GIVPRALEELFRQAALDNSSSVTFSM--SMLEVYMGSVRDLLAPKPVFKAYEAAT 241
P G++PRAL LF A + T+S S +E+Y +VRDLLA
Sbjct: 140 DPQLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNETVRDLLA-----TGTRKGQ 194
Query: 242 RCNLNIQTDAKGTVEIEGLTEVQIPDFTKAR--WWYNKGRRVRSTSWTNVNEASSRSHCL 299
I+ G+ E+ +P + + R+ R+ + T NE SSRSH +
Sbjct: 195 GGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSHSV 254
Query: 300 MRITIFRHGDALEAKTEV-SKLWMVDLGGSERVLKTGATG----QTLDEGRAINLSLSAL 354
++ I G+ + + L +VDL GSER+ A G + L E +AIN SLS L
Sbjct: 255 FQLQI--SGEHSSRGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTL 312
Query: 355 ADVIAALRRKRGHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVGETICSLSFAKR 414
VI AL K HVPYRNSKLT +L++SLG +K+LM V+ SP EE+V E++ SL FA +
Sbjct: 313 GLVIMALSNKESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASK 372
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 178 bits (452), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 109/304 (35%), Positives = 167/304 (54%), Gaps = 20/304 (6%)
Query: 123 VVRSGGSKKEFGFDKVFNQAASQEDVFVEV-EPILRSALDGHNVCVLAYGQTGTGKTFTM 181
V++ +F FD VF++ ++Q +VF +PILRS L+G+N VLAYG TG GKT TM
Sbjct: 64 VIKKQNKDLKFVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTM 123
Query: 182 DGTSDQPGIVPRALEELFR-QAALDNSSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAA 240
G++D+PG++ + L++ + + ++S LEVY +RDLL
Sbjct: 124 LGSADEPGVMYLTMLHLYKCMDEIKEEKICSTAVSYLEVYNEQIRDLLV----------- 172
Query: 241 TRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLM 300
L ++ D + V + GLT Q + + G + R+ T++N SSRSH +
Sbjct: 173 NSGPLAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVF 232
Query: 301 RITIFRHGD---ALEAKTEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADV 357
+I + R D ++ ++K+ ++DL GSER +GA G EG IN SL AL +V
Sbjct: 233 QIYL-RQQDKTASINQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNV 291
Query: 358 IAAL---RRKRGHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVGETICSLSFAKR 414
I AL +RK H+PYRNSKLT++L+DSLG + +M+ SP +T +L +A R
Sbjct: 292 INALADSKRKNQHIPYRNSKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANR 351
Query: 415 ARGI 418
A+ I
Sbjct: 352 AKDI 355
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 175 bits (443), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 174/317 (54%), Gaps = 39/317 (12%)
Query: 131 KEFGFDKVFN--------QAASQEDVFVEV-EPILRSALDGHNVCVLAYGQTGTGKTFTM 181
K F FD + ASQ+ V+ ++ E +L+ A +G+NVC+ AYGQTG GK++TM
Sbjct: 48 KSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTM 107
Query: 182 DGTS--DQPGIVPRALEELFRQAALDNSSSVTFSM--SMLEVYMGSVRDLLAPKPVFKAY 237
G DQ GI+P+ E+LF + + ++++S+ S +E+Y VRDLL PK
Sbjct: 108 MGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPK------ 161
Query: 238 EAATRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSH 297
+ NL ++ +E L+++ + + + + G + R+ + TN+NE SSRSH
Sbjct: 162 ---NKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSH 218
Query: 298 CLMRITIF---RHGDALEAKTE-VSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSA 353
+ I IF RH TE VSK+ +VDL GSER TGA G L EG IN SL+
Sbjct: 219 AVFNI-IFTQKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTT 277
Query: 354 LADVIAAL------------RRKRGHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEED 401
L VI+AL ++K +PYR+S LT +LR++LG S+ M+ SP + +
Sbjct: 278 LGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADIN 337
Query: 402 VGETICSLSFAKRARGI 418
ET+ +L +A RA+ I
Sbjct: 338 YDETLSTLRYADRAKQI 354
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 174 bits (442), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 174/317 (54%), Gaps = 39/317 (12%)
Query: 131 KEFGFDKVFN--------QAASQEDVFVEV-EPILRSALDGHNVCVLAYGQTGTGKTFTM 181
K F FD + ASQ+ V+ ++ E +L+ A +G+NVC+ AYGQTG GK++TM
Sbjct: 48 KSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTM 107
Query: 182 DGTS--DQPGIVPRALEELFRQAALDNSSSVTFSM--SMLEVYMGSVRDLLAPKPVFKAY 237
G DQ GI+P+ E+LF + + ++++S+ S +E+Y VRDLL PK
Sbjct: 108 MGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPK------ 161
Query: 238 EAATRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSH 297
+ NL ++ +E L+++ + + + + G + R+ + TN+NE SSRSH
Sbjct: 162 ---NKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSH 218
Query: 298 CLMRITIF---RHGDALEAKTE-VSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSA 353
+ I IF RH TE VSK+ +VDL GSER TGA G L EG IN SL+
Sbjct: 219 AVFNI-IFTQKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTT 277
Query: 354 LADVIAAL------------RRKRGHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEED 401
L VI+AL ++K +PYR+S LT +LR++LG S+ M+ SP + +
Sbjct: 278 LGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADIN 337
Query: 402 VGETICSLSFAKRARGI 418
ET+ +L +A RA+ I
Sbjct: 338 YDETLSTLRYADRAKQI 354
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 174 bits (442), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 121/332 (36%), Positives = 175/332 (52%), Gaps = 52/332 (15%)
Query: 130 KKEFGFDKVF-------NQAASQEDVFVEV-EPILRSALDGHNVCVLAYGQTGTGKTFTM 181
+K F FDK F A+QE V+ + E L +G++ C+ AYGQTG+GK++TM
Sbjct: 95 EKSFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTM 154
Query: 182 DGTSDQPGIVPRALEELFRQ--AALDNSSSVTFS--MSMLEVYMGSVRDLLAP----KPV 233
GT DQPG++PR E+LF++ +A D + +++++ +S EVY VRDLLAP KP
Sbjct: 155 MGTPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSYFEVYNEHVRDLLAPVVPNKPP 214
Query: 234 FKAYEAATRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEAS 293
+ L ++ ++ LTEV + + W G R+ + T +N+ S
Sbjct: 215 YY---------LKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTS 265
Query: 294 SRSHCLMRITI--FRHGDALEAKTE-VSKLWMVDLGGSERVLKTGATGQTLDEGRAINLS 350
SRSH + I + H + TE S++ +VDL GSER T ATGQ L EG IN S
Sbjct: 266 SRSHAVFTIMLKQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKS 325
Query: 351 LSALADVIAAL--------------RRKRGH--------VPYRNSKLTQILRDSLGDGSK 388
L+ L VIAAL + RG VPYR+S LT +L+DSLG SK
Sbjct: 326 LTTLGRVIAALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSK 385
Query: 389 VLMLVHASPCEEDVGETICSLSFAKRARGIES 420
M+ SP + D ET+ +L +A +A+ I +
Sbjct: 386 TAMIACISPTDYD--ETLSTLRYADQAKRIRT 415
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 174 bits (441), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 121/348 (34%), Positives = 184/348 (52%), Gaps = 23/348 (6%)
Query: 85 NKILDIKGCIRVFCRVRSFLVTGRRVIHEPVLTELEK------VVVRSGGSKK-EFGFDK 137
N++ +++G IRV+CR+R L I + + + + G S+ F FDK
Sbjct: 21 NELQELRGNIRVYCRIRPPLPHEDDNIEHIKVQPFDDDNGDQGMTINRGNSQVIPFKFDK 80
Query: 138 VFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEE 197
+F+Q + +++F EV +++S+LDG+NVC+ AYGQTG+GKT+TM D GIVP +
Sbjct: 81 IFDQQETNDEIFKEVGQLIQSSLDGYNVCIFAYGQTGSGKTYTMLNPGD--GIVPATINH 138
Query: 198 LFRQAALDNSS----SVTFSMSMLEVYMGSVRDLL---APKPVFKAYEAATRCNLNIQTD 250
+F + +D + S S +E+Y ++ DLL AP A ++ + +
Sbjct: 139 IF--SWIDKLAARGWSYKVSCEFIEIYNENIVDLLRSGAPSQENNDRNADSKHEIRHDQE 196
Query: 251 AKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDA 310
K T I +T + + ++RST+ T NE SSRSH + I + +
Sbjct: 197 LK-TTYITNITTCVLDSRDTVDKVLKRANKLRSTASTAANEHSSRSHSIFIIHLEGKNEG 255
Query: 311 LEAKTEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKRG---H 367
K++ L +VDL GSER+ + G+ L E ++IN SLS L DVI AL G H
Sbjct: 256 TGEKSQ-GILNLVDLAGSERLNSSMVVGERLRETQSINKSLSCLGDVIHALNSPDGQKRH 314
Query: 368 VPYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVGETICSLSFAKRA 415
+P+RNSKLT +L+ SL SK LM V+ SP + ETI SL FA +
Sbjct: 315 IPFRNSKLTYLLQYSLIGSSKTLMFVNISPAALHLNETINSLRFASKV 362
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 174 bits (440), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 174/317 (54%), Gaps = 39/317 (12%)
Query: 131 KEFGFDKVFN--------QAASQEDVFVEV-EPILRSALDGHNVCVLAYGQTGTGKTFTM 181
K F FD + ASQ+ V+ ++ E +L+ A +G+NVC+ AYGQTG GK++TM
Sbjct: 64 KSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTM 123
Query: 182 DGTS--DQPGIVPRALEELFRQAALDNSSSVTFSM--SMLEVYMGSVRDLLAPKPVFKAY 237
G DQ GI+P+ E+LF + + ++++S+ S +E+Y VRDLL PK
Sbjct: 124 MGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPK------ 177
Query: 238 EAATRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSH 297
+ NL ++ +E L+++ + + + + G + R+ + TN+NE SSRSH
Sbjct: 178 ---NKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSH 234
Query: 298 CLMRITIF---RHGDALEAKTE-VSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSA 353
+ I IF RH TE VSK+ +VDL GSER TGA G L EG IN SL+
Sbjct: 235 AVFNI-IFTQKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTT 293
Query: 354 LADVIAAL------------RRKRGHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEED 401
L VI+AL ++K +PYR+S LT +LR++LG S+ M+ SP + +
Sbjct: 294 LGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADIN 353
Query: 402 VGETICSLSFAKRARGI 418
ET+ +L +A RA+ I
Sbjct: 354 YDETLSTLRYADRAKQI 370
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 174 bits (440), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 174/317 (54%), Gaps = 39/317 (12%)
Query: 131 KEFGFDKVFN--------QAASQEDVFVEV-EPILRSALDGHNVCVLAYGQTGTGKTFTM 181
K F FD + ASQ+ V+ ++ E +L+ A +G+NVC+ AYGQTG GK++TM
Sbjct: 48 KSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTM 107
Query: 182 DGTS--DQPGIVPRALEELFRQAALDNSSSVTFSM--SMLEVYMGSVRDLLAPKPVFKAY 237
G DQ GI+P+ E+LF + + ++++S+ S +E+Y VRDLL PK
Sbjct: 108 MGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPK------ 161
Query: 238 EAATRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSH 297
+ NL ++ +E L+++ + + + + G + R+ + TN+NE SSRSH
Sbjct: 162 ---NKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSH 218
Query: 298 CLMRITIF---RHGDALEAKTE-VSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSA 353
+ I IF RH TE VSK+ +VDL GSER TGA G L EG IN SL+
Sbjct: 219 AVFNI-IFTQKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTT 277
Query: 354 LADVIAAL------------RRKRGHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEED 401
L VI+AL ++K +PYR+S LT +LR++LG S+ M+ SP + +
Sbjct: 278 LGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADIN 337
Query: 402 VGETICSLSFAKRARGI 418
ET+ +L +A RA+ I
Sbjct: 338 YDETLSTLRYADRAKQI 354
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 173 bits (438), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 115/349 (32%), Positives = 189/349 (54%), Gaps = 29/349 (8%)
Query: 88 LDIKGCIRVFCRVRSFLVTGRRVIHEPVLTELEK-------VVVRSGGS--KKEFGFDKV 138
+ ++G IRV+CRVR L+ + + ++ + + + R+ G F FD +
Sbjct: 1 MALRGNIRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNEGRILSYNFQFDMI 60
Query: 139 FNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEEL 198
F + + +++F E+ +++S+LDG+NVC+ AYGQTG+GKT+TM D G++P L +
Sbjct: 61 FEPSHTNKEIFEEIRQLVQSSLDGYNVCIFAYGQTGSGKTYTMLNAGD--GMIPMTLSHI 118
Query: 199 FRQAALDNSSSVTFSM--SMLEVYMGSVRDLLAPKPVFKAYEA------ATRCNLNIQTD 250
F+ A + M +E+Y ++ DLL FK+++ + + ++ +
Sbjct: 119 FKWTANLKERGWNYEMECEYIEIYNETILDLLRD---FKSHDNIDEILDSQKHDIRHDHE 175
Query: 251 AKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDA 310
+GT I +T +++ ++ K ++RST+ T NE SSRSH + + I +G
Sbjct: 176 KQGTY-ITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHI--NGRN 232
Query: 311 LE-AKTEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRK---RG 366
L +T KL +VDL GSER+ + TG+ L E + IN SLS L DVI AL +
Sbjct: 233 LHTGETSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKR 292
Query: 367 HVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVGETICSLSFAKRA 415
++P+RNSKLT +L+ SL SK LM V+ P + ET+ SL FA +
Sbjct: 293 YIPFRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASKV 341
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 171 bits (434), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 114/315 (36%), Positives = 168/315 (53%), Gaps = 23/315 (7%)
Query: 131 KEFGFDKVFNQAASQEDVF-VEVEPILRSALDGHNVCVLAYGQTGTGKTFTMDGT----- 184
K+F FD+ F + Q DV+ V V P++ L+G+N V AYGQTGTGKT TM G
Sbjct: 67 KKFTFDRSFGPESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAEL 126
Query: 185 ------SDQPGIVPRALEELFRQAALDNSSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYE 238
GI+PRAL LF + + T +S LE+Y + DLL+ +
Sbjct: 127 KSSWEDDSDIGIIPRALSHLFDELRM-MEVEYTMRISYLELYNEELCDLLST-------D 178
Query: 239 AATRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHC 298
T+ + + KG+V I+GL E+ + KG+ R T+ T +N SSRSH
Sbjct: 179 DTTKIRIFDDSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHT 238
Query: 299 LMRITIFRHGDALEAKT--EVSKLWMVDLGGSERVLKTG-ATGQTLDEGRAINLSLSALA 355
+ I + + +E + ++ KL +VDL GSE V K G G + E IN SL L
Sbjct: 239 VFSIVVHIRENGIEGEDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLG 298
Query: 356 DVIAALRRKRGHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVGETICSLSFAKRA 415
VI AL + HVPYR SKLT++L++SLG +K ++ SP +D+ ET+ +L +A RA
Sbjct: 299 RVITALVDRAPHVPYRESKLTRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRA 358
Query: 416 RGIESNRELSEDLKK 430
+ I++ E+++ L K
Sbjct: 359 KNIQNKPEVNQKLTK 373
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 171 bits (433), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 120/360 (33%), Positives = 181/360 (50%), Gaps = 46/360 (12%)
Query: 85 NKILDIKGCIRVFCRVR----------SFLVTGRRVIHEPVLTELEKVVVRSGGSKKEFG 134
N++ +++G IRV+CR+R + L+ + +E +++ EF
Sbjct: 7 NELQELRGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFK 66
Query: 135 FDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRA 194
FDK+F+Q + DVF EV +++S+LDG+NVC+ AYGQTG+GKTFTM D GI+P
Sbjct: 67 FDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD--GIIPST 124
Query: 195 LEELFRQAALDNSSSVTFSMS--MLEVYMGSVRDLLAPKPVFKAYEAATRCNLNIQTDAK 252
+ +F + + ++ +E+Y ++ DLL K + + I+ D +
Sbjct: 125 ISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKE-DTSIGLKHEIRHDQE 183
Query: 253 GT-----------VEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMR 301
+E E + E+ + K ++RST+ T NE SSRSH +
Sbjct: 184 TKTTTITNVTSCKLESEEMVEIILK----------KANKLRSTASTASNEHSSRSHSIFI 233
Query: 302 ITIFRHGDALEAKT---EVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVI 358
I H AKT L +VDL GSER+ + G L E + IN SLS L DVI
Sbjct: 234 I----HLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVI 289
Query: 359 AALRR---KRGHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVGETICSLSFAKRA 415
AL + + H+P+RNSKLT +L+ SL SK LM V+ SP + ET+ SL FA +
Sbjct: 290 HALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 349
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 168 bits (425), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 109/312 (34%), Positives = 167/312 (53%), Gaps = 18/312 (5%)
Query: 122 VVVRSGGSKKEFGFDKVFNQAASQEDVFVEVE-PILRSALDGHNVCVLAYGQTGTGKTFT 180
V+ + GSK F FD+VF+ + ++V+ E+ PI+ SA+ G+N + AYGQT +GKT+T
Sbjct: 36 VIYQVDGSKS-FNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYT 94
Query: 181 MDGTSDQPGIVPRALEELFRQAALDNSSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAA 240
M G+ D G++PRA+ ++F++ +S +E+Y ++ DLL K
Sbjct: 95 MMGSEDHLGVIPRAIHDIFQKIKKFPDREFLLRVSYMEIYNETITDLLCGTQKMKP---- 150
Query: 241 TRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLM 300
L I+ D V + LTE + A W KG + R T +N+ SSRSH +
Sbjct: 151 ----LIIREDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIF 206
Query: 301 RITIFRHGDA----LEAKTEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALAD 356
R+ + E +VS L +VDL GSER +TGA G L EG IN SL L
Sbjct: 207 RMILESREKGEPSNCEGSVKVSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQ 266
Query: 357 VIAALRRKR--GHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVGETICSLSFAKR 414
VI L + G + YR+SKLT+IL++SLG +K ++ +P D ET+ +L FA
Sbjct: 267 VIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKTRIICTITPVSFD--ETLTALQFAST 324
Query: 415 ARGIESNRELSE 426
A+ +++ ++E
Sbjct: 325 AKYMKNTPYVNE 336
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 167 bits (424), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 120/357 (33%), Positives = 181/357 (50%), Gaps = 42/357 (11%)
Query: 85 NKILDIKGCIRVFCRVR----------SFLVTGRRVIHEPVLTELEKVVVRSGGSKKEFG 134
N++ +++G IRV+ R+R + L+ + +E +++ EF
Sbjct: 52 NELQELRGNIRVYLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFK 111
Query: 135 FDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRA 194
FDK+F+Q + DVF EV +++S+LDG+NV + AYGQTG+GKTFTM D GI+P
Sbjct: 112 FDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNPGD--GIIPST 169
Query: 195 LEELFRQAALDNSSSVTFSMS--MLEVYMGSVRDLLAPKPVFKAYEAATRCNLNIQTDAK 252
+ +F + + ++ +E+Y ++ DLL K + + I+ D +
Sbjct: 170 ISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKE-DTSIGLKHEIRHDQE 228
Query: 253 ---------GTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRIT 303
+V++E V+I K ++RST+ T NE SSRSH + I
Sbjct: 229 TKTTTITNVTSVKLESEEMVEI--------ILKKANKLRSTASTASNEHSSRSHSIFII- 279
Query: 304 IFRHGDALEAKT---EVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAA 360
H AKT L +VDL GSER+ + G L E + IN SLSAL DVI A
Sbjct: 280 ---HLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHA 336
Query: 361 LRR---KRGHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVGETICSLSFAKR 414
L + + H+P+RNSKLT +L+ SL SK LM V+ SP + ET+ SL FA +
Sbjct: 337 LGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASK 393
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 167 bits (423), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 119/353 (33%), Positives = 175/353 (49%), Gaps = 46/353 (13%)
Query: 92 GCIRVFCRVR----------SFLVTGRRVIHEPVLTELEKVVVRSGGSKKEFGFDKVFNQ 141
G IRV+CR+R + L+ + +E +++ EF FDK+F+Q
Sbjct: 2 GNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQ 61
Query: 142 AASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQ 201
+ DVF EV +++S+LDG+NVC+ AYGQTG+GKTFTM D GI+P + +F
Sbjct: 62 QDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD--GIIPSTISHIFNW 119
Query: 202 AALDNSSSVTFSMS--MLEVYMGSVRDLLAPKPVFKAYEAATRCNLNIQTDAKGT----- 254
+ + ++ +E+Y ++ DLL K + + I+ D +
Sbjct: 120 INKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKE-DTSIGLKHEIRHDQETKTTTIT 178
Query: 255 ------VEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHG 308
+E E + E+ + K ++RST+ T NE SSRSH + I H
Sbjct: 179 NVTSCKLESEEMVEIILK----------KANKLRSTASTASNEHSSRSHSIFII----HL 224
Query: 309 DALEAKT---EVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRR-- 363
AKT L +VDL GSER+ + G L E + IN SLS L DVI AL +
Sbjct: 225 SGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPD 284
Query: 364 -KRGHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVGETICSLSFAKRA 415
+ H+P+RNSKLT +L+ SL SK LM V+ SP + ET+ SL FA +
Sbjct: 285 STKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 337
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 166 bits (419), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 118/355 (33%), Positives = 176/355 (49%), Gaps = 46/355 (12%)
Query: 90 IKGCIRVFCRVR----------SFLVTGRRVIHEPVLTELEKVVVRSGGSKKEFGFDKVF 139
++G IRV+CR+R + L+ + +E +++ EF FDK+F
Sbjct: 1 MRGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIF 60
Query: 140 NQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELF 199
+Q + DVF EV +++S+LDG+NVC+ AYGQTG+GKTFTM D GI+P + +F
Sbjct: 61 DQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD--GIIPSTISHIF 118
Query: 200 RQAALDNSSSVTFSMS--MLEVYMGSVRDLLAPKPVFKAYEAATRCNLNIQTDAKGT--- 254
+ + ++ +E+Y ++ DLL K + + I+ D +
Sbjct: 119 NWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKE-DTSIGLKHEIRHDQETKTTT 177
Query: 255 --------VEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFR 306
+E E + E+ + K ++RST+ T NE SSRSH + I
Sbjct: 178 ITNVTSCKLESEEMVEIILK----------KANKLRSTASTASNEHSSRSHSIFII---- 223
Query: 307 HGDALEAKT---EVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRR 363
H AKT L +VDL GS R+ + G L E + IN SLS L DVI AL +
Sbjct: 224 HLSGSNAKTGAHSYGTLNLVDLAGSARINVSQVVGDRLRETQNINKSLSCLGDVIHALGQ 283
Query: 364 ---KRGHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVGETICSLSFAKRA 415
+ H+P+RNSKLT +L+ SL SK LM V+ SP + ET+ SL FA +
Sbjct: 284 PDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 338
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 166 bits (419), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 118/355 (33%), Positives = 176/355 (49%), Gaps = 46/355 (12%)
Query: 90 IKGCIRVFCRVR----------SFLVTGRRVIHEPVLTELEKVVVRSGGSKKEFGFDKVF 139
++G IRV+CR+R + L+ + +E +++ EF FDK+F
Sbjct: 1 MRGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIF 60
Query: 140 NQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELF 199
+Q + DVF EV +++S+LDG+NVC+ AYGQTG+GKTFTM D GI+P + +F
Sbjct: 61 DQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD--GIIPSTISHIF 118
Query: 200 RQAALDNSSSVTFSMS--MLEVYMGSVRDLLAPKPVFKAYEAATRCNLNIQTDAKGT--- 254
+ + ++ +E+Y ++ DLL K + + I+ D +
Sbjct: 119 NWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKE-DTSIGLKHEIRHDQETKTTT 177
Query: 255 --------VEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFR 306
+E E + E+ + K ++RST+ T NE SS SH + I
Sbjct: 178 ITNVTSCKLESEEMVEIILK----------KANKLRSTASTASNEHSSASHSIFII---- 223
Query: 307 HGDALEAKT---EVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRR 363
H AKT L +VDL GSER+ + G L E + IN SLS L DVI AL +
Sbjct: 224 HLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQ 283
Query: 364 ---KRGHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVGETICSLSFAKRA 415
+ H+P+RNSKLT +L+ SL SK LM V+ SP + ET+ SL FA +
Sbjct: 284 PDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 338
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 166 bits (419), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 118/355 (33%), Positives = 176/355 (49%), Gaps = 46/355 (12%)
Query: 90 IKGCIRVFCRVR----------SFLVTGRRVIHEPVLTELEKVVVRSGGSKKEFGFDKVF 139
++G IRV+CR+R + L+ + +E +++ EF FDK+F
Sbjct: 1 MRGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIF 60
Query: 140 NQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELF 199
+Q + DVF EV +++S+LDG+NVC+ AYGQTG+GKTFTM D GI+P + +F
Sbjct: 61 DQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD--GIIPSTISHIF 118
Query: 200 RQAALDNSSSVTFSMS--MLEVYMGSVRDLLAPKPVFKAYEAATRCNLNIQTDAKGT--- 254
+ + ++ +E+Y ++ DLL K + + I+ D +
Sbjct: 119 NWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKE-DTSIGLKHEIRHDQETKTTT 177
Query: 255 --------VEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFR 306
+E E + E+ + K ++RST+ T NE SSRSH + I
Sbjct: 178 ITNVTSCKLESEEMVEIILK----------KANKLRSTASTASNEHSSRSHSIFII---- 223
Query: 307 HGDALEAKT---EVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRR 363
H AKT L +VDL GSER+ + G L E + I SLS L DVI AL +
Sbjct: 224 HLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNIKKSLSCLGDVIHALGQ 283
Query: 364 ---KRGHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVGETICSLSFAKRA 415
+ H+P+RNSKLT +L+ SL SK LM V+ SP + ET+ SL FA +
Sbjct: 284 PDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 338
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 158 bits (400), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 110/305 (36%), Positives = 167/305 (54%), Gaps = 12/305 (3%)
Query: 118 ELEKVVVRSGGSKKEFGFDKVFNQAASQEDVFVEV-EPILRSALDGHNVCVLAYGQTGTG 176
++ + VV + + F D V + A SQ+ V+ V + ++ ALDG+N ++ YGQTG G
Sbjct: 59 DIRRGVVNNQQTDWSFKLDGVLHDA-SQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAG 117
Query: 177 KTFTMDGTSD---QPGIVPRALEELFRQAALDNSSSVTFSMSMLEVYMGSVRDLLAPKPV 233
KT+TM G ++ GI+PRAL+++FR + ++T +S LE+Y S+ DLL+ P
Sbjct: 118 KTYTMMGATENYKHRGILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLLSTLP- 176
Query: 234 FKAYEAATRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEAS 293
Y + + I + +G V I+GL+ A +G R + +N+ S
Sbjct: 177 ---YVGPSVTPMTIVENPQG-VFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNS 232
Query: 294 SRSHCLMRITIFRHGDAL-EAKTEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLS 352
SRSHC+ I + H L E K SK+ +VDL GSER+ K+G+ GQ L E IN SLS
Sbjct: 233 SRSHCIFTIYLEAHSRTLSEEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLS 292
Query: 353 ALADVIAAL-RRKRGHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVGETICSLSF 411
L I AL +KR H+P+R KLT L+DSLG ++++ + + ET+ SL F
Sbjct: 293 FLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRF 352
Query: 412 AKRAR 416
A R +
Sbjct: 353 ASRMK 357
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 135 bits (339), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 105/333 (31%), Positives = 162/333 (48%), Gaps = 50/333 (15%)
Query: 101 RSFLVTGRR---VIHEPVLTELEKVVVRSGGSKKEFGFDKVFNQAASQEDVF-VEVEPIL 156
R FL GRR V+ P ++ + ++V + EF FD F SQ++++ + P++
Sbjct: 34 RQFL--GRREPSVVQFPPWSDGKSLIV----DQNEFHFDHAFPATISQDEMYQALILPLV 87
Query: 157 RSALDGHNVCVLAYGQTGTGKTFTMDGTS------DQPGIVPRALEELFRQAAL---DNS 207
L+G LAYGQTGTGK+++M T + GI+PRAL ++F + +N
Sbjct: 88 DKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNK 147
Query: 208 SSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEA-ATRCN---LNIQTDAKGTVEIEGLTEV 263
++ S +E+Y DLL P A RC L+ Q D +E+
Sbjct: 148 DAIQVYASFIEIYNEKPFDLLGSTPHMPMVAARCQRCTCLPLHSQADLHHILELG----- 202
Query: 264 QIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDALEAKTEVSKLWMV 323
+ RRVR T N+N SSRSH ++ I + ++KT S++ +V
Sbjct: 203 ------------TRNRRVRPT---NMNSNSSRSHAIVTIHV-------KSKTHHSRMNIV 240
Query: 324 DLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKRGHVPYRNSKLTQILRDSL 383
DL GSE V +TG G EG INL L ++ V+ ++ +PYR+S LT +L+ SL
Sbjct: 241 DLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTVIPYRDSVLTTVLQASL 300
Query: 384 GDGSKVLMLVHASPCEEDVGETICSLSFAKRAR 416
S + L SP + D+ ET+ +L F A+
Sbjct: 301 TAQSYLTFLACISPHQCDLSETLSTLRFGTSAK 333
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 135 bits (339), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 105/334 (31%), Positives = 162/334 (48%), Gaps = 50/334 (14%)
Query: 101 RSFLVTGRR---VIHEPVLTELEKVVVRSGGSKKEFGFDKVFNQAASQEDVF-VEVEPIL 156
R FL GRR V+ P ++ + ++V + EF FD F SQ++++ + P++
Sbjct: 34 RQFL--GRREPSVVQFPPWSDGKSLIV----DQNEFHFDHAFPATISQDEMYQALILPLV 87
Query: 157 RSALDGHNVCVLAYGQTGTGKTFTMDGTS------DQPGIVPRALEELFRQAAL---DNS 207
L+G LAYGQTGTGK+++M T + GI+PRAL ++F + +N
Sbjct: 88 DKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNK 147
Query: 208 SSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEA-ATRCN---LNIQTDAKGTVEIEGLTEV 263
++ S +E+Y DLL P A RC L+ Q D +E+
Sbjct: 148 DAIQVYASFIEIYNEKPFDLLGSTPHMPMVAARCQRCTCLPLHSQADLHHILELG----- 202
Query: 264 QIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDALEAKTEVSKLWMV 323
+ RRVR T N+N SSRSH ++ I + ++KT S++ +V
Sbjct: 203 ------------TRNRRVRPT---NMNSNSSRSHAIVTIHV-------KSKTHHSRMNIV 240
Query: 324 DLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKRGHVPYRNSKLTQILRDSL 383
DL GSE V +TG G EG INL L ++ V+ ++ +PYR+S LT +L+ SL
Sbjct: 241 DLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTVIPYRDSVLTTVLQASL 300
Query: 384 GDGSKVLMLVHASPCEEDVGETICSLSFAKRARG 417
S + L SP + D+ ET+ +L F A+
Sbjct: 301 TAQSYLTFLACISPHQCDLSETLSTLRFGTSAKA 334
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 107/322 (33%), Positives = 150/322 (46%), Gaps = 40/322 (12%)
Query: 110 VIHEPVLTELEKVVVRSGGSKKEFGFDKVFNQAASQEDVF-VEVEPILRSALDGHNVCVL 168
++HEP L KV + + F FD F++ AS E V+ P++++ +G
Sbjct: 104 LVHEPKL----KVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCF 159
Query: 169 AYGQTGTGKTFTMDG------TSDQPGIVPRALEELF------RQAALDNSSSVTFSMSM 216
AYGQTG+GKT TM G + GI A ++F R L+ VTF
Sbjct: 160 AYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTF---- 215
Query: 217 LEVYMGSVRDLLAPKPVFKAYEAATRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYN 276
E+Y G V DLL K + E D++ V++ GL E + N
Sbjct: 216 FEIYNGKVFDLLNKKAKLRVLE-----------DSRQQVQVVGLQEYLVTCADDVIKMIN 264
Query: 277 KGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDALEAKTEVSKLWMVDLGGSERVLKTG- 335
G R++ T N SSRSH +I + R L K +VDL G+ER T
Sbjct: 265 MGSACRTSGQTFANSNSSRSHACFQI-LLRTKGRLHGK-----FSLVDLAGNERGADTSS 318
Query: 336 ATGQTLDEGRAINLSLSALADVIAALRRKRGHVPYRNSKLTQILRDS-LGDGSKVLMLVH 394
A QT EG IN SL AL + I AL + + H P+R SKLTQ+LRDS +G+ S+ M+
Sbjct: 319 ADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAM 378
Query: 395 ASPCEEDVGETICSLSFAKRAR 416
SP T+ +L +A R +
Sbjct: 379 ISPGISSCEYTLNTLRYADRVK 400
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 132 bits (333), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 107/322 (33%), Positives = 150/322 (46%), Gaps = 40/322 (12%)
Query: 110 VIHEPVLTELEKVVVRSGGSKKEFGFDKVFNQAASQEDVF-VEVEPILRSALDGHNVCVL 168
++HEP L KV + + F FD F++ AS E V+ P++++ +G
Sbjct: 32 LVHEPKL----KVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCF 87
Query: 169 AYGQTGTGKTFTMDG------TSDQPGIVPRALEELF------RQAALDNSSSVTFSMSM 216
AYGQTG+GKT TM G + GI A ++F R L+ VTF
Sbjct: 88 AYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTF---- 143
Query: 217 LEVYMGSVRDLLAPKPVFKAYEAATRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYN 276
E+Y G V DLL K + E D++ V++ GL E + N
Sbjct: 144 FEIYNGKVFDLLNKKAKLRVLE-----------DSRQQVQVVGLQEYLVTCADDVIKMIN 192
Query: 277 KGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDALEAKTEVSKLWMVDLGGSERVLKTG- 335
G R++ T N SSRSH +I + R L K +VDL G+ER T
Sbjct: 193 MGSACRTSGQTFANSNSSRSHACFQI-LLRTKGRLHGK-----FSLVDLAGNERGADTSS 246
Query: 336 ATGQTLDEGRAINLSLSALADVIAALRRKRGHVPYRNSKLTQILRDS-LGDGSKVLMLVH 394
A QT EG IN SL AL + I AL + + H P+R SKLTQ+LRDS +G+ S+ M+
Sbjct: 247 ADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAM 306
Query: 395 ASPCEEDVGETICSLSFAKRAR 416
SP T+ +L +A R +
Sbjct: 307 ISPGISSCEYTLNTLRYADRVK 328
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 130 bits (326), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 100/318 (31%), Positives = 146/318 (45%), Gaps = 32/318 (10%)
Query: 110 VIHEPVLTELEKVVVRSGGSKKEFGFDKVFNQAASQEDVF-VEVEPILRSALDGHNVCVL 168
++HEP +KV + + F FD F+ +A E V+ P++ + +
Sbjct: 122 MVHEPK----QKVDLTRYLENQTFRFDYAFDDSAPNEMVYRFTARPLVETIFERGMATCF 177
Query: 169 AYGQTGTGKTFTMDGTSD------QPGIVPRALEELFRQAALDNSSSVTFSM--SMLEVY 220
AYGQTG+GKT TM G GI A ++F N + + + E+Y
Sbjct: 178 AYGQTGSGKTHTMGGDFSGKNQDCSKGIYALAARDVFLMLKKPNYKKLELQVYATFFEIY 237
Query: 221 MGSVRDLLAPKPVFKAYEAATRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRR 280
G V DLL K + E D K V++ GL E ++ + G
Sbjct: 238 SGKVFDLLNRKTKLRVLE-----------DGKQQVQVVGLQEREVKCVEDVLKLIDIGNS 286
Query: 281 VRSTSWTNVNEASSRSHCLMRITIFRHGDALEAKTEVSKLWMVDLGGSERVLKTG-ATGQ 339
R++ T+ N SSRSH + +I + R G K ++DL G+ER T A Q
Sbjct: 287 CRTSGQTSANAHSSRSHAVFQIILRRKGKLH------GKFSLIDLAGNERGADTSSADRQ 340
Query: 340 TLDEGRAINLSLSALADVIAALRRKRGHVPYRNSKLTQILRDS-LGDGSKVLMLVHASPC 398
T EG IN SL AL + I AL R + H P+R SKLTQ+LRDS +G+ S+ M+ SP
Sbjct: 341 TRLEGAEINKSLLALKECIRALGRNKPHTPFRASKLTQVLRDSFIGENSRTCMIATISPG 400
Query: 399 EEDVGETICSLSFAKRAR 416
T+ +L +A R +
Sbjct: 401 MASCENTLNTLRYANRVK 418
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 128 bits (322), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 103/321 (32%), Positives = 149/321 (46%), Gaps = 38/321 (11%)
Query: 110 VIHEPVLTELEKVVVRSGGSKKEFGFDKVFNQAASQEDVF-VEVEPILRSALDGHNVCVL 168
++HEP L KV + + F FD F++ AS E V+ P++++ +G
Sbjct: 84 LVHEPKL----KVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCF 139
Query: 169 AYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQAALD----------NSSSVTFSMSMLE 218
AYGQTG+GKT TM G D G A + ++ A+ D + ++ E
Sbjct: 140 AYGQTGSGKTHTMGG--DLSGKAQNASKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFE 197
Query: 219 VYMGSVRDLLAPKPVFKAYEAATRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKG 278
+Y G + DLL K + E D K V++ GL E + + G
Sbjct: 198 IYNGKLFDLLNKKAKLRVLE-----------DGKQQVQVVGLQEHLVNSADDVIKMIDMG 246
Query: 279 RRVRSTSWTNVNEASSRSHCLMRITIFRHGDALEAKTEV-SKLWMVDLGGSERVLKTG-A 336
R++ T N SSRSH +I L AK + K +VDL G+ER T A
Sbjct: 247 SACRTSGQTFANSNSSRSHACFQII-------LRAKGRMHGKFSLVDLAGNERGADTSSA 299
Query: 337 TGQTLDEGRAINLSLSALADVIAALRRKRGHVPYRNSKLTQILRDS-LGDGSKVLMLVHA 395
QT EG IN SL AL + I AL + + H P+R SKLTQ+LRDS +G+ S+ M+
Sbjct: 300 DRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIATI 359
Query: 396 SPCEEDVGETICSLSFAKRAR 416
SP T+ +L +A R +
Sbjct: 360 SPGISSCEYTLNTLRYADRVK 380
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 122 bits (306), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 88/296 (29%), Positives = 145/296 (48%), Gaps = 24/296 (8%)
Query: 130 KKEFGFDKVFNQAASQEDVFVE-VEPILRSALDGHNVC-VLAYGQTGTGKTFTMDGT--- 184
+ EF DKVF+ V+ ++P++ + VC AYGQTG+GKT+TM G+
Sbjct: 49 RHEFIVDKVFDDTVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPY 108
Query: 185 --SDQPGIVPRALEELFRQAAL-DNSSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAAT 241
SD PGI A ++F + D ++ +S E+Y G + DLL + + A E
Sbjct: 109 GQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKRKMVAALE--- 165
Query: 242 RCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMR 301
+ K V ++ L +++ + G +R + N+ SSRSH ++
Sbjct: 166 --------NGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILN 217
Query: 302 ITIFRHGDALEAKTEVSKLWMVDLGGSERVLKT-GATGQTLDEGRAINLSLSALADVIAA 360
I + + T + K+ +DL GSER T QT +G IN SL AL + I A
Sbjct: 218 IDL----KDINKNTSLGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRA 273
Query: 361 LRRKRGHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVGETICSLSFAKRAR 416
+ + H+P+R+S+LT++LRD SK +M+ + SP +T+ +L ++ R +
Sbjct: 274 MDSDKNHIPFRDSELTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVK 329
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 113 bits (282), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 78/247 (31%), Positives = 122/247 (49%), Gaps = 25/247 (10%)
Query: 94 IRVFCRVRSF----LVTGRRVIHEPVLTELEKVVVRSGGSKKEFGFDKVFNQAASQEDVF 149
I+V CR R ++ G + I P E VV+ G K + FD+V +QE V+
Sbjct: 8 IKVMCRFRPLNEAEILRGDKFI--PKFKGEETVVI---GQGKPYVFDRVLPPNTTQEQVY 62
Query: 150 -VEVEPILRSALDGHNVCVLAYGQTGTGKTFTMDGTSDQP---GIVPRALEELFRQ-AAL 204
+ I++ L+G+N + AYGQT +GKT TM+G P GI+PR ++F ++
Sbjct: 63 NACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPQLMGIIPRIAHDIFDHIYSM 122
Query: 205 DNSSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAATRCNLNIQTDAKGTVEIEGLTEVQ 264
D + +S E+Y+ +RDLL ++ NL + D ++G TE
Sbjct: 123 DENLEFHIKVSYFEIYLDKIRDLL----------DVSKTNLAVHEDKNRVPYVKGCTERF 172
Query: 265 IPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDALEAKTEVSKLWMVD 324
+ + ++G+ R + TN+NE SSRSH + I I + E K KL++VD
Sbjct: 173 VSSPEEVMDVIDEGKANRHVAVTNMNEHSSRSHSIFLINIKQENVETEKKLS-GKLYLVD 231
Query: 325 LGGSERV 331
L GSE+V
Sbjct: 232 LAGSEKV 238
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Query: 348 NLSLSALADVIAALRR-KRGHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVGETI 406
N SLSAL +VI+AL + HVPYR+SK+T+IL+DSLG + +++ SP + ET
Sbjct: 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETK 60
Query: 407 CSLSFAKRARGIESNRELSEDL 428
+L F +RA+ I++ ++ +L
Sbjct: 61 STLMFGQRAKTIKNTVSVNLEL 82
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
Query: 344 GRAINLSLSALADVIAALRR-KRGHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDV 402
+ IN SLSAL +VI+AL + HVPYR+SK+T+IL+DSL + +++ SP +
Sbjct: 1 AKNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNE 60
Query: 403 GETICSLSFAKRARGIESNRELSEDL 428
ET +L F +RA+ I++ ++ +L
Sbjct: 61 AETKSTLMFGQRAKTIKNTVSVNLEL 86
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.130 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,600,365
Number of Sequences: 62578
Number of extensions: 516875
Number of successful extensions: 1630
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1356
Number of HSP's gapped (non-prelim): 60
length of query: 630
length of database: 14,973,337
effective HSP length: 105
effective length of query: 525
effective length of database: 8,402,647
effective search space: 4411389675
effective search space used: 4411389675
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)