Query 006826
Match_columns 630
No_of_seqs 430 out of 2271
Neff 6.0
Searched_HMMs 46136
Date Thu Mar 28 15:03:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006826.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006826hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0245 Kinesin-like protein [ 100.0 7.5E-91 1.6E-95 780.7 27.8 404 92-507 4-472 (1221)
2 KOG4280 Kinesin-like protein [ 100.0 1.2E-89 2.5E-94 756.4 26.5 350 92-453 5-368 (574)
3 KOG0239 Kinesin (KAR3 subfamil 100.0 2.5E-89 5.5E-94 775.6 30.0 350 65-424 288-646 (670)
4 KOG0243 Kinesin-like protein [ 100.0 1.1E-88 2.3E-93 776.5 34.7 329 91-427 48-399 (1041)
5 PLN03188 kinesin-12 family pro 100.0 1.9E-84 4.2E-89 747.6 41.5 347 91-456 97-468 (1320)
6 KOG0240 Kinesin (SMY1 subfamil 100.0 1.2E-84 2.5E-89 700.8 33.2 327 91-428 6-341 (607)
7 cd01370 KISc_KIP3_like Kinesin 100.0 7.9E-83 1.7E-87 679.1 36.4 316 93-418 1-338 (338)
8 cd01373 KISc_KLP2_like Kinesin 100.0 1.4E-82 3.1E-87 676.9 36.6 316 92-418 1-337 (337)
9 KOG0242 Kinesin-like protein [ 100.0 1.2E-81 2.7E-86 715.1 33.4 342 92-445 6-363 (675)
10 cd01368 KISc_KIF23_like Kinesi 100.0 1.7E-80 3.7E-85 662.8 36.6 315 93-416 2-345 (345)
11 KOG0241 Kinesin-like protein [ 100.0 2.8E-81 6.1E-86 691.6 30.4 332 92-431 4-364 (1714)
12 cd01365 KISc_KIF1A_KIF1B Kines 100.0 9.3E-80 2E-84 659.7 38.0 327 92-425 1-356 (356)
13 cd01367 KISc_KIF2_like Kinesin 100.0 5.6E-79 1.2E-83 645.6 34.7 309 92-416 1-322 (322)
14 cd01376 KISc_KID_like Kinesin 100.0 2E-78 4.4E-83 640.5 36.6 309 93-416 1-319 (319)
15 cd01374 KISc_CENP_E Kinesin mo 100.0 2.7E-78 5.9E-83 639.8 37.1 315 93-418 1-321 (321)
16 cd01364 KISc_BimC_Eg5 Kinesin 100.0 7E-78 1.5E-82 644.2 37.0 327 92-426 2-351 (352)
17 cd01369 KISc_KHC_KIF5 Kinesin 100.0 8.8E-78 1.9E-82 636.8 36.8 316 92-418 2-325 (325)
18 cd01366 KISc_C_terminal Kinesi 100.0 2.4E-77 5.2E-82 634.3 38.5 323 91-421 1-329 (329)
19 cd01371 KISc_KIF3 Kinesin moto 100.0 1.9E-77 4E-82 636.6 36.0 317 93-418 2-333 (333)
20 cd01372 KISc_KIF4 Kinesin moto 100.0 1.1E-76 2.3E-81 632.3 35.6 317 93-419 2-341 (341)
21 cd01375 KISc_KIF9_like Kinesin 100.0 3E-76 6.6E-81 627.6 35.7 315 93-416 1-334 (334)
22 smart00129 KISc Kinesin motor, 100.0 6.2E-73 1.3E-77 601.6 37.8 322 93-425 1-335 (335)
23 cd00106 KISc Kinesin motor dom 100.0 6.5E-73 1.4E-77 599.3 37.8 316 93-416 1-328 (328)
24 PF00225 Kinesin: Kinesin moto 100.0 2E-72 4.4E-77 597.1 26.2 314 99-418 1-335 (335)
25 KOG0247 Kinesin-like protein [ 100.0 3.5E-68 7.5E-73 585.2 31.7 327 89-421 28-439 (809)
26 KOG0246 Kinesin-like protein [ 100.0 2.1E-67 4.5E-72 565.4 29.7 314 92-420 208-543 (676)
27 KOG0244 Kinesin-like protein [ 100.0 2.9E-68 6.3E-73 600.7 10.3 357 100-466 1-374 (913)
28 COG5059 KIP1 Kinesin-like prot 100.0 2E-63 4.4E-68 560.3 29.4 318 91-425 21-343 (568)
29 cd01363 Motor_domain Myosin an 100.0 7.1E-52 1.5E-56 406.2 19.4 177 148-397 8-186 (186)
30 COG5059 KIP1 Kinesin-like prot 99.1 5.8E-13 1.3E-17 151.4 -12.3 287 54-362 262-566 (568)
31 KOG0239 Kinesin (KAR3 subfamil 95.7 0.007 1.5E-07 70.8 3.2 89 130-232 25-113 (670)
32 TIGR01242 26Sp45 26S proteasom 94.7 0.19 4E-06 54.7 10.3 18 164-181 156-173 (364)
33 COG0556 UvrB Helicase subunit 94.2 0.073 1.6E-06 60.0 5.6 91 131-225 3-101 (663)
34 PF00308 Bac_DnaA: Bacterial d 93.9 0.024 5.2E-07 57.5 1.1 49 132-182 4-52 (219)
35 PTZ00454 26S protease regulato 92.4 0.22 4.8E-06 55.1 6.1 18 164-181 179-196 (398)
36 COG2805 PilT Tfp pilus assembl 92.4 0.063 1.4E-06 57.0 1.6 30 153-182 114-143 (353)
37 PRK06893 DNA replication initi 91.6 0.13 2.8E-06 52.3 2.9 47 131-182 11-57 (229)
38 PRK06620 hypothetical protein; 91.6 0.075 1.6E-06 53.7 1.1 49 131-182 11-62 (214)
39 PRK12377 putative replication 91.1 0.14 3E-06 53.2 2.5 48 134-182 72-119 (248)
40 COG2804 PulE Type II secretory 91.0 0.12 2.7E-06 58.1 2.1 32 152-183 246-277 (500)
41 PRK08084 DNA replication initi 91.0 0.13 2.9E-06 52.5 2.2 47 131-182 17-63 (235)
42 PRK03992 proteasome-activating 90.8 1.8 3.9E-05 47.7 10.9 18 164-181 165-182 (389)
43 PRK14086 dnaA chromosomal repl 90.5 0.12 2.6E-06 60.0 1.4 50 131-182 283-332 (617)
44 PRK08116 hypothetical protein; 90.3 0.15 3.2E-06 53.4 1.9 50 132-182 81-132 (268)
45 PRK07952 DNA replication prote 90.0 0.19 4.2E-06 52.0 2.4 49 133-182 69-117 (244)
46 PRK14088 dnaA chromosomal repl 89.8 0.16 3.6E-06 56.8 1.8 49 131-182 100-148 (440)
47 PRK05642 DNA replication initi 89.7 0.22 4.7E-06 51.0 2.5 49 131-182 14-63 (234)
48 PRK14087 dnaA chromosomal repl 89.0 0.22 4.8E-06 56.0 2.1 49 132-182 111-159 (450)
49 TIGR00362 DnaA chromosomal rep 89.0 0.22 4.8E-06 54.8 2.1 50 131-182 105-154 (405)
50 COG1474 CDC6 Cdc6-related prot 88.9 0.56 1.2E-05 51.4 5.1 33 149-181 26-59 (366)
51 TIGR03420 DnaA_homol_Hda DnaA 88.4 0.32 7E-06 48.5 2.6 46 131-181 10-55 (226)
52 PRK08903 DnaA regulatory inact 88.4 0.34 7.3E-06 48.8 2.8 47 131-181 13-59 (227)
53 PRK06835 DNA replication prote 88.2 0.21 4.6E-06 53.9 1.2 35 147-182 167-201 (329)
54 TIGR02928 orc1/cdc6 family rep 88.2 0.32 6.8E-06 52.3 2.6 49 133-181 8-57 (365)
55 PRK00149 dnaA chromosomal repl 88.1 0.26 5.7E-06 55.1 2.0 50 131-182 117-166 (450)
56 PRK09087 hypothetical protein; 87.4 0.29 6.4E-06 49.9 1.7 47 131-182 16-62 (226)
57 PF04851 ResIII: Type III rest 87.3 0.3 6.5E-06 46.2 1.6 30 154-183 14-44 (184)
58 PTZ00361 26 proteosome regulat 87.1 3.6 7.8E-05 46.3 10.1 16 166-181 219-234 (438)
59 PRK00411 cdc6 cell division co 87.0 0.43 9.2E-06 52.0 2.8 49 133-181 23-72 (394)
60 COG0593 DnaA ATPase involved i 86.6 0.33 7.2E-06 53.8 1.6 50 131-182 82-131 (408)
61 COG1484 DnaC DNA replication p 85.2 0.58 1.3E-05 48.7 2.5 41 140-182 83-123 (254)
62 PRK06526 transposase; Provisio 85.0 0.34 7.3E-06 50.4 0.7 21 161-183 97-117 (254)
63 PRK08939 primosomal protein Dn 84.9 0.41 9E-06 51.1 1.3 51 133-183 124-175 (306)
64 PRK08727 hypothetical protein; 83.9 0.65 1.4E-05 47.4 2.2 45 131-182 14-59 (233)
65 cd00009 AAA The AAA+ (ATPases 83.6 0.7 1.5E-05 41.1 2.1 25 157-181 12-36 (151)
66 PRK08181 transposase; Validate 83.2 0.64 1.4E-05 48.9 1.8 21 161-183 105-125 (269)
67 TIGR03689 pup_AAA proteasome A 83.1 5.3 0.00011 45.8 9.2 16 166-181 218-233 (512)
68 cd00046 DEXDc DEAD-like helica 82.5 0.45 9.7E-06 41.9 0.3 17 167-183 3-19 (144)
69 PF00437 T2SE: Type II/IV secr 81.9 0.67 1.5E-05 47.9 1.4 71 92-181 74-144 (270)
70 PF13245 AAA_19: Part of AAA d 81.8 0.66 1.4E-05 39.3 1.0 26 156-182 3-28 (76)
71 PF00270 DEAD: DEAD/DEAH box h 81.7 0.77 1.7E-05 43.1 1.6 27 154-182 6-32 (169)
72 COG5008 PilU Tfp pilus assembl 81.1 0.95 2.1E-05 47.6 2.1 34 148-181 109-144 (375)
73 PRK10436 hypothetical protein; 81.0 0.68 1.5E-05 52.3 1.1 29 154-182 208-236 (462)
74 PTZ00112 origin recognition co 80.8 1.1 2.4E-05 54.2 2.7 49 133-181 748-798 (1164)
75 COG1201 Lhr Lhr-like helicases 80.6 1.6 3.5E-05 52.4 4.1 26 154-181 29-54 (814)
76 TIGR02538 type_IV_pilB type IV 80.4 0.74 1.6E-05 53.3 1.2 29 154-182 306-334 (564)
77 PRK12402 replication factor C 80.4 0.82 1.8E-05 48.4 1.4 41 134-181 13-53 (337)
78 PF13191 AAA_16: AAA ATPase do 80.1 0.59 1.3E-05 44.6 0.2 33 149-181 9-41 (185)
79 TIGR02533 type_II_gspE general 80.1 0.85 1.8E-05 51.9 1.5 29 154-182 232-260 (486)
80 PRK06921 hypothetical protein; 79.8 1.2 2.6E-05 46.7 2.4 36 147-182 97-135 (266)
81 PF13401 AAA_22: AAA domain; P 79.5 0.55 1.2E-05 42.3 -0.2 18 164-181 4-21 (131)
82 smart00053 DYNc Dynamin, GTPas 79.4 3 6.5E-05 43.1 5.1 54 264-331 85-138 (240)
83 PF01935 DUF87: Domain of unkn 79.4 0.65 1.4E-05 46.7 0.2 55 349-404 165-219 (229)
84 PRK12422 chromosomal replicati 79.3 1.2 2.6E-05 50.1 2.4 51 130-182 105-159 (445)
85 PF01637 Arch_ATPase: Archaeal 78.9 0.83 1.8E-05 44.9 0.9 30 152-181 8-37 (234)
86 smart00382 AAA ATPases associa 78.7 0.72 1.6E-05 40.5 0.3 18 165-182 3-20 (148)
87 TIGR01420 pilT_fam pilus retra 78.5 1 2.2E-05 48.8 1.4 29 154-182 112-140 (343)
88 cd01131 PilT Pilus retraction 77.6 0.82 1.8E-05 45.4 0.4 18 165-182 2-19 (198)
89 PF12846 AAA_10: AAA-like doma 77.2 0.82 1.8E-05 46.9 0.3 19 164-182 1-19 (304)
90 TIGR02525 plasmid_TraJ plasmid 76.9 1.2 2.7E-05 48.9 1.6 27 155-182 141-167 (372)
91 TIGR02524 dot_icm_DotB Dot/Icm 75.9 1.3 2.9E-05 48.3 1.5 21 162-182 132-152 (358)
92 PF13604 AAA_30: AAA domain; P 75.9 1.3 2.9E-05 43.9 1.3 28 154-181 8-35 (196)
93 cd01129 PulE-GspE PulE/GspE Th 75.7 1.4 3E-05 46.0 1.5 30 153-182 69-98 (264)
94 TIGR00635 ruvB Holliday juncti 75.5 1.7 3.7E-05 45.5 2.1 43 139-181 3-47 (305)
95 PF01695 IstB_IS21: IstB-like 74.8 1.8 3.9E-05 42.5 1.9 19 165-183 48-66 (178)
96 PRK13894 conjugal transfer ATP 74.5 1.8 3.9E-05 46.6 2.0 28 153-181 138-165 (319)
97 TIGR02782 TrbB_P P-type conjug 73.7 1.9 4E-05 46.0 1.8 28 153-181 122-149 (299)
98 TIGR03015 pepcterm_ATPase puta 73.0 2.4 5.3E-05 43.3 2.5 22 160-181 39-60 (269)
99 PRK13900 type IV secretion sys 72.9 2 4.4E-05 46.5 1.9 29 152-181 149-177 (332)
100 PF06309 Torsin: Torsin; Inte 72.3 1.6 3.4E-05 41.0 0.8 25 167-201 56-80 (127)
101 PF13086 AAA_11: AAA domain; P 71.9 1.9 4.1E-05 42.3 1.3 28 154-182 8-35 (236)
102 PF13479 AAA_24: AAA domain 71.7 1.5 3.4E-05 44.0 0.6 20 164-183 3-22 (213)
103 PF00448 SRP54: SRP54-type pro 70.6 1.4 3E-05 44.0 0.0 16 166-181 3-18 (196)
104 PF00004 AAA: ATPase family as 70.2 1.6 3.5E-05 39.0 0.3 15 167-181 1-15 (132)
105 PF13207 AAA_17: AAA domain; P 69.9 1.8 3.9E-05 38.6 0.6 16 166-181 1-16 (121)
106 PRK13833 conjugal transfer pro 69.8 2.5 5.5E-05 45.6 1.8 28 153-181 134-161 (323)
107 COG4962 CpaF Flp pilus assembl 69.6 2.5 5.5E-05 45.8 1.7 72 153-230 163-268 (355)
108 PLN03137 ATP-dependent DNA hel 68.9 21 0.00046 44.7 9.4 27 153-181 466-492 (1195)
109 PF05496 RuvB_N: Holliday junc 68.5 5.4 0.00012 41.1 3.7 43 139-181 23-67 (233)
110 cd01130 VirB11-like_ATPase Typ 68.5 3 6.5E-05 40.8 1.9 29 152-181 14-42 (186)
111 PF05970 PIF1: PIF1-like helic 68.2 2.8 6.2E-05 45.7 1.8 37 142-181 3-39 (364)
112 PF03215 Rad17: Rad17 cell cyc 67.9 3 6.6E-05 47.9 2.0 32 150-181 29-62 (519)
113 TIGR03499 FlhF flagellar biosy 67.6 4 8.7E-05 43.0 2.7 17 166-182 196-212 (282)
114 PRK13851 type IV secretion sys 67.6 2.9 6.3E-05 45.5 1.7 30 152-182 151-180 (344)
115 PRK12723 flagellar biosynthesi 67.4 3.9 8.4E-05 45.3 2.7 18 164-181 174-191 (388)
116 smart00487 DEXDc DEAD-like hel 67.3 3.2 7E-05 38.8 1.8 28 154-182 15-42 (201)
117 PHA02544 44 clamp loader, smal 66.6 3 6.4E-05 44.0 1.5 22 161-182 39-61 (316)
118 TIGR00631 uvrb excinuclease AB 65.7 5.7 0.00012 46.9 3.8 88 133-224 2-97 (655)
119 cd00268 DEADc DEAD-box helicas 65.5 3.8 8.1E-05 40.0 1.9 27 153-181 27-53 (203)
120 PRK00080 ruvB Holliday junctio 65.0 3.5 7.5E-05 44.1 1.7 40 143-182 28-69 (328)
121 PRK04195 replication factor C 65.0 4.3 9.4E-05 46.0 2.5 37 145-181 19-56 (482)
122 PF12329 TMF_DNA_bd: TATA elem 64.6 38 0.00083 28.7 7.6 54 430-483 8-61 (74)
123 PF02562 PhoH: PhoH-like prote 64.4 4.2 9E-05 41.2 2.0 24 156-181 13-36 (205)
124 PF00580 UvrD-helicase: UvrD/R 64.3 2.5 5.3E-05 43.7 0.4 20 163-182 12-31 (315)
125 PRK13342 recombination factor 64.3 3.4 7.3E-05 45.9 1.4 38 144-181 16-53 (413)
126 PRK11776 ATP-dependent RNA hel 64.3 3.9 8.4E-05 45.8 1.9 26 153-180 32-57 (460)
127 PF01580 FtsK_SpoIIIE: FtsK/Sp 64.1 2.2 4.7E-05 42.2 -0.1 17 166-182 40-56 (205)
128 PRK09183 transposase/IS protei 63.5 3.5 7.5E-05 42.9 1.3 20 161-182 101-120 (259)
129 PTZ00424 helicase 45; Provisio 63.5 3.8 8.3E-05 44.5 1.7 27 153-181 56-82 (401)
130 KOG0728 26S proteasome regulat 63.3 66 0.0014 34.0 10.3 18 163-180 180-197 (404)
131 PF13671 AAA_33: AAA domain; P 62.6 2.9 6.3E-05 38.2 0.5 15 167-181 2-16 (143)
132 KOG0989 Replication factor C, 62.5 5.3 0.00012 42.9 2.4 36 146-181 37-74 (346)
133 PF00910 RNA_helicase: RNA hel 61.8 2.5 5.3E-05 37.7 -0.2 26 167-202 1-26 (107)
134 PRK06547 hypothetical protein; 60.5 6.5 0.00014 38.4 2.5 29 153-181 4-32 (172)
135 PRK11192 ATP-dependent RNA hel 60.4 4.8 0.0001 44.6 1.8 27 153-181 29-55 (434)
136 PRK04837 ATP-dependent RNA hel 60.0 5 0.00011 44.4 1.8 27 153-181 36-62 (423)
137 TIGR02788 VirB11 P-type DNA tr 59.9 5.4 0.00012 42.5 2.0 29 152-181 133-161 (308)
138 PLN03025 replication factor C 59.7 4.8 0.0001 43.0 1.5 35 145-182 18-52 (319)
139 PF13238 AAA_18: AAA domain; P 59.6 3.6 7.7E-05 36.6 0.5 15 167-181 1-15 (129)
140 PF00063 Myosin_head: Myosin h 59.6 5.3 0.00011 47.3 2.0 36 146-181 66-102 (689)
141 TIGR00348 hsdR type I site-spe 59.4 5.7 0.00012 47.0 2.3 30 152-182 247-281 (667)
142 PF05673 DUF815: Protein of un 59.3 9.8 0.00021 39.6 3.7 110 156-299 43-154 (249)
143 PF07728 AAA_5: AAA domain (dy 58.8 3.1 6.7E-05 38.2 -0.1 15 167-181 2-16 (139)
144 PRK13764 ATPase; Provisional 58.4 4.5 9.8E-05 47.2 1.2 19 164-182 257-275 (602)
145 TIGR02881 spore_V_K stage V sp 58.0 8.2 0.00018 39.9 2.9 17 165-181 43-59 (261)
146 PRK10590 ATP-dependent RNA hel 58.0 6 0.00013 44.4 2.0 27 153-181 29-55 (456)
147 KOG0926 DEAH-box RNA helicase 57.8 6.1 0.00013 47.1 2.0 29 163-191 270-308 (1172)
148 PRK00440 rfc replication facto 57.6 5.2 0.00011 41.8 1.4 21 161-181 35-55 (319)
149 PF06414 Zeta_toxin: Zeta toxi 57.0 4.2 9.1E-05 40.2 0.5 20 162-181 13-32 (199)
150 PF07724 AAA_2: AAA domain (Cd 56.6 4.5 9.7E-05 39.5 0.6 17 165-181 4-20 (171)
151 PF02388 FemAB: FemAB family; 56.3 90 0.002 34.7 10.9 47 349-397 194-240 (406)
152 PRK10536 hypothetical protein; 56.3 4.8 0.0001 42.2 0.8 41 132-181 51-91 (262)
153 COG4942 Membrane-bound metallo 55.4 50 0.0011 37.0 8.4 36 436-471 61-96 (420)
154 PHA00729 NTP-binding motif con 54.7 9.2 0.0002 39.3 2.6 29 154-182 7-35 (226)
155 TIGR00614 recQ_fam ATP-depende 54.4 6.8 0.00015 44.2 1.7 27 153-181 17-43 (470)
156 PRK13341 recombination factor 54.1 6.9 0.00015 46.8 1.7 21 161-181 49-69 (725)
157 PRK11448 hsdR type I restricti 54.1 6.3 0.00014 49.4 1.5 30 153-183 423-452 (1123)
158 KOG0340 ATP-dependent RNA heli 54.0 12 0.00025 41.0 3.3 42 153-196 35-82 (442)
159 KOG2373 Predicted mitochondria 53.4 11 0.00025 41.1 3.0 28 154-182 261-291 (514)
160 PF12775 AAA_7: P-loop contain 53.1 7.6 0.00017 40.8 1.7 28 153-181 23-50 (272)
161 PF04102 SlyX: SlyX; InterPro 52.9 86 0.0019 26.1 7.6 48 433-480 3-50 (69)
162 smart00763 AAA_PrkA PrkA AAA d 52.7 12 0.00025 41.2 3.1 47 131-181 44-95 (361)
163 PRK11889 flhF flagellar biosyn 52.7 9.8 0.00021 42.5 2.5 18 165-182 242-259 (436)
164 cd01383 MYSc_type_VIII Myosin 52.5 11 0.00023 44.8 3.0 36 146-181 73-109 (677)
165 COG1219 ClpX ATP-dependent pro 52.5 6 0.00013 42.8 0.8 18 163-180 96-113 (408)
166 PRK00771 signal recognition pa 52.3 13 0.00027 42.0 3.4 18 164-181 95-112 (437)
167 smart00338 BRLZ basic region l 52.3 75 0.0016 25.8 7.1 38 432-469 24-61 (65)
168 PRK04406 hypothetical protein; 52.0 1.3E+02 0.0029 25.6 8.7 47 432-478 9-55 (75)
169 PRK14722 flhF flagellar biosyn 51.8 5.5 0.00012 43.9 0.4 19 164-182 137-155 (374)
170 PRK05703 flhF flagellar biosyn 51.6 10 0.00022 42.5 2.5 17 166-182 223-239 (424)
171 cd01385 MYSc_type_IX Myosin mo 51.5 11 0.00024 44.9 2.9 36 146-181 75-111 (692)
172 cd00124 MYSc Myosin motor doma 51.4 11 0.00023 44.9 2.7 36 146-181 67-103 (679)
173 cd01384 MYSc_type_XI Myosin mo 51.2 11 0.00023 44.9 2.7 36 146-181 69-105 (674)
174 KOG0727 26S proteasome regulat 51.2 83 0.0018 33.3 8.7 86 121-206 140-248 (408)
175 PF00170 bZIP_1: bZIP transcri 51.2 90 0.002 25.2 7.4 38 431-468 23-60 (64)
176 PRK01297 ATP-dependent RNA hel 50.5 8.4 0.00018 43.4 1.6 27 153-181 115-141 (475)
177 PF06048 DUF927: Domain of unk 50.5 12 0.00026 39.4 2.8 33 153-186 183-221 (286)
178 TIGR00618 sbcc exonuclease Sbc 50.5 15 0.00032 45.8 3.9 17 165-181 27-43 (1042)
179 cd01381 MYSc_type_VII Myosin m 50.5 12 0.00027 44.3 3.1 36 146-181 67-103 (671)
180 PLN00020 ribulose bisphosphate 50.5 11 0.00024 41.7 2.5 51 131-181 110-165 (413)
181 PHA02653 RNA helicase NPH-II; 50.4 11 0.00025 44.6 2.8 26 153-180 170-195 (675)
182 PRK06696 uridine kinase; Valid 50.3 14 0.0003 37.2 3.1 35 147-181 5-39 (223)
183 cd01378 MYSc_type_I Myosin mot 50.2 12 0.00025 44.6 2.8 36 146-181 67-103 (674)
184 KOG3859 Septins (P-loop GTPase 50.2 8.4 0.00018 40.9 1.4 28 154-181 31-59 (406)
185 cd01387 MYSc_type_XV Myosin mo 50.0 12 0.00026 44.5 2.9 36 146-181 68-104 (677)
186 PRK00295 hypothetical protein; 49.8 1.2E+02 0.0026 25.3 8.0 46 434-479 5-50 (68)
187 PRK11331 5-methylcytosine-spec 49.8 10 0.00022 42.9 2.1 38 383-424 320-359 (459)
188 PRK14974 cell division protein 49.7 13 0.00028 40.4 2.9 18 164-181 140-157 (336)
189 PRK00736 hypothetical protein; 49.6 1.1E+02 0.0024 25.4 7.8 46 434-479 5-50 (68)
190 COG1419 FlhF Flagellar GTP-bin 49.3 11 0.00023 42.0 2.1 18 164-181 203-220 (407)
191 cd01120 RecA-like_NTPases RecA 49.3 6 0.00013 36.3 0.2 15 167-181 2-16 (165)
192 COG1223 Predicted ATPase (AAA+ 49.2 6.6 0.00014 41.4 0.5 18 164-181 151-168 (368)
193 PHA02244 ATPase-like protein 49.1 15 0.00032 40.6 3.2 21 159-181 116-136 (383)
194 KOG0354 DEAD-box like helicase 48.9 12 0.00026 44.6 2.6 43 136-181 44-93 (746)
195 PRK10865 protein disaggregatio 48.9 12 0.00026 45.7 2.7 45 133-181 565-615 (857)
196 TIGR02640 gas_vesic_GvpN gas v 48.8 13 0.00029 38.5 2.7 27 153-181 12-38 (262)
197 TIGR00602 rad24 checkpoint pro 48.8 8.5 0.00018 45.4 1.4 38 145-182 89-128 (637)
198 PRK10416 signal recognition pa 48.7 14 0.0003 39.8 2.9 17 165-181 115-131 (318)
199 PF02456 Adeno_IVa2: Adenoviru 48.6 6.7 0.00014 42.2 0.4 36 165-200 88-139 (369)
200 TIGR00064 ftsY signal recognit 48.6 14 0.00029 38.9 2.7 17 165-181 73-89 (272)
201 PRK04537 ATP-dependent RNA hel 48.5 10 0.00022 44.1 1.9 27 153-181 37-63 (572)
202 PF11932 DUF3450: Protein of u 48.1 1E+02 0.0023 31.7 9.2 35 438-472 53-87 (251)
203 smart00242 MYSc Myosin. Large 48.0 13 0.00027 44.3 2.6 36 146-181 73-109 (677)
204 cd01382 MYSc_type_VI Myosin mo 47.7 12 0.00027 44.6 2.5 36 146-181 72-108 (717)
205 PF00735 Septin: Septin; Inte 47.6 7.3 0.00016 41.2 0.6 21 161-181 1-21 (281)
206 PRK02119 hypothetical protein; 47.6 1.3E+02 0.0028 25.5 8.0 47 433-479 8-54 (73)
207 PF05729 NACHT: NACHT domain 47.5 7.3 0.00016 36.0 0.5 16 166-181 2-17 (166)
208 cd01377 MYSc_type_II Myosin mo 47.4 14 0.00029 44.2 2.8 36 146-181 72-108 (693)
209 KOG0335 ATP-dependent RNA heli 47.3 8.4 0.00018 43.6 1.0 62 156-222 105-189 (482)
210 cd01380 MYSc_type_V Myosin mot 47.1 14 0.0003 44.0 2.8 36 146-181 67-103 (691)
211 PRK13729 conjugal transfer pil 47.1 83 0.0018 35.8 8.6 46 433-478 75-120 (475)
212 PRK04325 hypothetical protein; 46.9 1.3E+02 0.0027 25.6 7.8 46 433-478 8-53 (74)
213 PF04201 TPD52: Tumour protein 46.8 28 0.00061 34.0 4.3 39 45-83 24-66 (162)
214 TIGR01241 FtsH_fam ATP-depende 46.7 10 0.00023 43.0 1.7 46 132-181 51-105 (495)
215 PRK04328 hypothetical protein; 46.3 13 0.00029 38.3 2.2 27 154-180 10-39 (249)
216 PRK02793 phi X174 lysis protei 46.3 1.3E+02 0.0029 25.3 7.8 46 433-478 7-52 (72)
217 TIGR03819 heli_sec_ATPase heli 46.2 12 0.00026 40.7 1.9 30 151-181 166-195 (340)
218 TIGR01389 recQ ATP-dependent D 46.2 11 0.00023 43.9 1.7 27 153-181 19-45 (591)
219 PF08298 AAA_PrkA: PrkA AAA do 46.1 38 0.00083 37.1 5.7 47 155-201 76-143 (358)
220 PRK11034 clpA ATP-dependent Cl 46.0 15 0.00032 44.3 2.8 37 145-181 463-505 (758)
221 PRK00131 aroK shikimate kinase 45.8 9.1 0.0002 36.0 0.9 17 165-181 5-21 (175)
222 PF11932 DUF3450: Protein of u 45.8 33 0.00071 35.5 5.0 36 435-470 57-92 (251)
223 PLN00206 DEAD-box ATP-dependen 45.7 14 0.0003 42.4 2.4 27 153-181 149-175 (518)
224 KOG2543 Origin recognition com 45.6 7.4 0.00016 43.0 0.2 38 165-221 31-68 (438)
225 COG1222 RPT1 ATP-dependent 26S 45.5 46 0.00099 36.7 6.1 15 166-180 187-201 (406)
226 TIGR01618 phage_P_loop phage n 45.5 7.8 0.00017 39.6 0.4 20 164-183 12-31 (220)
227 PRK11637 AmiB activator; Provi 45.2 73 0.0016 35.6 8.0 21 575-599 316-336 (428)
228 TIGR00376 DNA helicase, putati 45.1 11 0.00025 44.4 1.6 17 166-182 175-191 (637)
229 KOG4552 Vitamin-D-receptor int 44.9 3.6E+02 0.0078 27.6 13.7 66 435-500 75-140 (272)
230 TIGR02902 spore_lonB ATP-depen 44.6 13 0.00029 42.8 2.1 41 134-181 63-103 (531)
231 TIGR01359 UMP_CMP_kin_fam UMP- 44.5 9.5 0.00021 36.7 0.8 15 167-181 2-16 (183)
232 KOG4571 Activating transcripti 44.5 89 0.0019 33.3 7.9 41 435-475 249-289 (294)
233 PRK14723 flhF flagellar biosyn 44.5 15 0.00033 44.1 2.6 17 165-181 186-202 (767)
234 PF13555 AAA_29: P-loop contai 44.4 8 0.00017 31.8 0.2 15 167-181 26-40 (62)
235 smart00489 DEXDc3 DEAD-like he 44.3 13 0.00027 39.4 1.7 37 141-182 9-45 (289)
236 smart00488 DEXDc2 DEAD-like he 44.3 13 0.00027 39.4 1.7 37 141-182 9-45 (289)
237 TIGR02237 recomb_radB DNA repa 44.3 12 0.00026 36.9 1.4 25 157-181 2-29 (209)
238 PF06745 KaiC: KaiC; InterPro 44.3 13 0.00029 37.2 1.8 25 156-180 8-35 (226)
239 PRK11057 ATP-dependent DNA hel 44.2 14 0.00029 43.3 2.1 27 153-181 31-57 (607)
240 PRK11634 ATP-dependent RNA hel 44.1 15 0.00032 43.4 2.4 27 153-181 34-60 (629)
241 COG2256 MGS1 ATPase related to 44.0 12 0.00026 41.5 1.6 37 144-180 28-64 (436)
242 cd01126 TraG_VirD4 The TraG/Tr 43.9 12 0.00026 40.9 1.5 16 167-182 2-17 (384)
243 cd02021 GntK Gluconate kinase 43.6 9.8 0.00021 35.4 0.7 15 167-181 2-16 (150)
244 PF13173 AAA_14: AAA domain 43.5 8.8 0.00019 35.1 0.3 16 166-181 4-19 (128)
245 cd01123 Rad51_DMC1_radA Rad51_ 43.4 15 0.00033 36.7 2.1 28 154-181 6-36 (235)
246 cd01850 CDC_Septin CDC/Septin. 43.2 10 0.00022 39.9 0.7 21 161-181 1-21 (276)
247 TIGR02639 ClpA ATP-dependent C 43.1 17 0.00036 43.6 2.7 37 145-181 459-501 (731)
248 KOG4010 Coiled-coil protein TP 42.9 40 0.00087 33.6 4.7 56 39-94 33-93 (208)
249 PF02534 T4SS-DNA_transf: Type 42.9 17 0.00036 40.8 2.5 17 165-181 45-61 (469)
250 PRK07261 topology modulation p 42.7 10 0.00023 36.7 0.7 15 167-181 3-17 (171)
251 COG3074 Uncharacterized protei 42.2 2.1E+02 0.0046 24.2 8.3 26 432-457 23-48 (79)
252 PF10236 DAP3: Mitochondrial r 42.1 14 0.00031 39.4 1.8 24 159-182 18-41 (309)
253 TIGR01817 nifA Nif-specific re 42.0 14 0.00029 42.5 1.6 45 132-181 192-236 (534)
254 cd01127 TrwB Bacterial conjuga 41.9 9.1 0.0002 42.5 0.2 17 165-181 43-59 (410)
255 PRK11664 ATP-dependent RNA hel 41.8 19 0.00042 43.7 3.0 33 147-181 5-37 (812)
256 PRK08118 topology modulation p 41.7 11 0.00024 36.4 0.8 14 167-180 4-17 (167)
257 PRK12724 flagellar biosynthesi 41.6 19 0.00042 40.4 2.7 17 165-181 224-240 (432)
258 cd01428 ADK Adenylate kinase ( 41.6 11 0.00024 36.3 0.8 15 167-181 2-16 (194)
259 PF06005 DUF904: Protein of un 41.5 2.2E+02 0.0047 24.1 8.4 24 433-456 10-33 (72)
260 cd01379 MYSc_type_III Myosin m 41.4 18 0.00039 42.8 2.6 36 146-181 67-103 (653)
261 TIGR03158 cas3_cyano CRISPR-as 41.1 19 0.00041 39.2 2.5 26 156-181 6-31 (357)
262 cd01386 MYSc_type_XVIII Myosin 40.7 18 0.0004 43.6 2.5 36 146-181 67-103 (767)
263 PF13476 AAA_23: AAA domain; P 40.3 10 0.00022 36.3 0.2 18 165-182 20-37 (202)
264 TIGR01313 therm_gnt_kin carboh 40.3 11 0.00023 35.7 0.3 14 167-180 1-14 (163)
265 PRK10917 ATP-dependent DNA hel 40.3 19 0.00042 42.7 2.6 39 140-181 261-299 (681)
266 cd00464 SK Shikimate kinase (S 40.2 12 0.00026 34.6 0.7 16 166-181 1-16 (154)
267 PRK06995 flhF flagellar biosyn 40.1 10 0.00022 43.2 0.3 17 165-181 257-273 (484)
268 TIGR02397 dnaX_nterm DNA polym 39.9 19 0.00042 38.4 2.3 35 144-181 18-53 (355)
269 CHL00176 ftsH cell division pr 39.8 16 0.00034 43.2 1.7 46 132-181 179-233 (638)
270 TIGR03345 VI_ClpV1 type VI sec 39.6 22 0.00047 43.5 2.9 37 145-181 571-613 (852)
271 PRK13767 ATP-dependent helicas 39.6 16 0.00035 44.7 1.8 27 153-181 38-64 (876)
272 cd02020 CMPK Cytidine monophos 39.6 13 0.00027 34.0 0.8 15 167-181 2-16 (147)
273 KOG1803 DNA helicase [Replicat 39.5 21 0.00046 41.5 2.6 27 155-182 193-219 (649)
274 KOG1532 GTPase XAB1, interacts 39.4 32 0.0007 36.7 3.7 28 163-200 18-45 (366)
275 PRK05580 primosome assembly pr 39.2 18 0.00039 43.0 2.1 38 139-182 143-180 (679)
276 PRK06067 flagellar accessory p 39.1 19 0.00042 36.3 2.1 28 154-181 12-42 (234)
277 TIGR02746 TraC-F-type type-IV 38.9 11 0.00023 45.3 0.2 19 164-182 430-448 (797)
278 TIGR02903 spore_lon_C ATP-depe 38.9 20 0.00043 42.2 2.4 43 132-181 150-192 (615)
279 KOG1853 LIS1-interacting prote 38.9 1.4E+02 0.0031 31.2 8.1 29 427-455 45-73 (333)
280 KOG0953 Mitochondrial RNA heli 38.8 14 0.00029 42.7 1.0 38 166-203 193-236 (700)
281 cd00632 Prefoldin_beta Prefold 38.6 1.1E+02 0.0024 27.3 6.6 32 435-466 71-102 (105)
282 PRK14963 DNA polymerase III su 38.6 15 0.00032 42.2 1.2 42 134-181 12-53 (504)
283 cd01858 NGP_1 NGP-1. Autoanti 38.5 21 0.00045 33.6 2.1 20 162-181 100-119 (157)
284 PRK10803 tol-pal system protei 38.5 1.4E+02 0.003 31.3 8.4 40 438-477 58-97 (263)
285 KOG2264 Exostosin EXT1L [Signa 38.4 1E+02 0.0022 35.8 7.5 9 322-330 6-14 (907)
286 PRK00846 hypothetical protein; 38.3 2.3E+02 0.0049 24.5 8.0 48 433-480 12-59 (77)
287 PTZ00110 helicase; Provisional 38.2 18 0.00039 41.7 1.9 26 154-181 159-184 (545)
288 PF07716 bZIP_2: Basic region 38.0 1.2E+02 0.0026 23.7 6.0 31 432-462 23-53 (54)
289 TIGR02322 phosphon_PhnN phosph 37.9 12 0.00026 35.9 0.3 16 166-181 3-18 (179)
290 KOG1514 Origin recognition com 37.9 28 0.00061 41.2 3.3 47 147-203 403-451 (767)
291 COG0630 VirB11 Type IV secreto 37.8 11 0.00025 40.3 0.2 18 165-182 144-161 (312)
292 cd01124 KaiC KaiC is a circadi 37.8 15 0.00032 35.2 1.0 15 167-181 2-16 (187)
293 COG1125 OpuBA ABC-type proline 37.6 12 0.00026 39.4 0.3 30 386-423 185-214 (309)
294 PF15290 Syntaphilin: Golgi-lo 37.2 1.1E+02 0.0024 32.4 7.2 17 464-480 119-135 (305)
295 PRK01172 ski2-like helicase; P 37.2 21 0.00045 42.2 2.3 26 153-180 28-53 (674)
296 PRK10246 exonuclease subunit S 37.2 31 0.00068 43.1 3.9 17 165-181 31-47 (1047)
297 CHL00181 cbbX CbbX; Provisiona 37.2 14 0.0003 39.1 0.7 15 167-181 62-76 (287)
298 TIGR02894 DNA_bind_RsfA transc 37.2 2.8E+02 0.0061 27.2 9.4 41 439-479 109-149 (161)
299 PF00931 NB-ARC: NB-ARC domain 37.2 27 0.00059 35.8 2.9 30 152-181 5-36 (287)
300 PRK08233 hypothetical protein; 37.2 14 0.00031 35.1 0.7 16 166-181 5-20 (182)
301 CHL00081 chlI Mg-protoporyphyr 37.0 19 0.00042 39.3 1.8 53 131-201 12-64 (350)
302 PF07926 TPR_MLP1_2: TPR/MLP1/ 36.8 1.6E+02 0.0034 27.5 7.6 47 436-482 61-107 (132)
303 PRK09361 radB DNA repair and r 36.7 25 0.00055 35.1 2.5 28 154-181 10-40 (225)
304 TIGR03817 DECH_helic helicase/ 36.6 22 0.00048 42.7 2.4 27 153-181 42-68 (742)
305 PRK10867 signal recognition pa 36.6 29 0.00063 39.1 3.2 18 164-181 100-117 (433)
306 PRK06217 hypothetical protein; 36.6 15 0.00032 35.8 0.7 15 167-181 4-18 (183)
307 PF00158 Sigma54_activat: Sigm 36.6 28 0.00061 33.8 2.7 32 250-281 92-123 (168)
308 TIGR03744 traC_PFL_4706 conjug 36.4 12 0.00027 45.7 0.2 19 163-181 474-492 (893)
309 PRK14531 adenylate kinase; Pro 36.4 15 0.00033 35.7 0.8 16 166-181 4-19 (183)
310 KOG0330 ATP-dependent RNA heli 36.2 20 0.00043 39.7 1.7 27 153-181 89-115 (476)
311 PHA02624 large T antigen; Prov 36.1 25 0.00055 41.2 2.6 28 154-181 419-448 (647)
312 PRK10820 DNA-binding transcrip 36.1 17 0.00036 41.8 1.2 46 131-181 199-244 (520)
313 TIGR02880 cbbX_cfxQ probable R 36.0 13 0.00029 39.1 0.4 16 166-181 60-75 (284)
314 TIGR03877 thermo_KaiC_1 KaiC d 36.0 25 0.00055 35.7 2.4 26 155-180 9-37 (237)
315 PF07946 DUF1682: Protein of u 35.8 3.8E+02 0.0082 28.9 11.4 64 386-449 213-281 (321)
316 PF00485 PRK: Phosphoribulokin 35.6 13 0.00028 36.5 0.2 15 167-181 2-16 (194)
317 PRK14961 DNA polymerase III su 35.6 24 0.00052 38.5 2.2 19 163-181 37-55 (363)
318 COG0419 SbcC ATPase involved i 35.4 23 0.0005 43.4 2.3 33 165-199 26-65 (908)
319 TIGR00643 recG ATP-dependent D 35.3 25 0.00055 41.3 2.5 39 140-181 235-273 (630)
320 cd01983 Fer4_NifH The Fer4_Nif 34.9 15 0.00033 30.3 0.4 15 167-181 2-16 (99)
321 PF10168 Nup88: Nuclear pore c 34.9 1.4E+02 0.003 36.0 8.5 35 242-276 366-405 (717)
322 PRK09270 nucleoside triphospha 34.9 30 0.00065 34.9 2.7 20 162-181 31-50 (229)
323 PRK12726 flagellar biosynthesi 34.8 14 0.00031 41.0 0.4 18 165-182 207-224 (407)
324 cd02023 UMPK Uridine monophosp 34.8 14 0.0003 36.3 0.2 15 167-181 2-16 (198)
325 PRK13922 rod shape-determining 34.8 1E+02 0.0023 32.1 6.8 37 435-471 70-106 (276)
326 PF08477 Miro: Miro-like prote 34.8 18 0.00039 31.8 0.9 15 167-181 2-16 (119)
327 TIGR02173 cyt_kin_arch cytidyl 34.7 17 0.00036 34.3 0.7 16 166-181 2-17 (171)
328 COG4026 Uncharacterized protei 34.6 2E+02 0.0043 29.8 8.2 7 256-262 12-18 (290)
329 COG3883 Uncharacterized protei 34.6 1.4E+02 0.003 31.6 7.5 38 436-473 68-105 (265)
330 PTZ00014 myosin-A; Provisional 34.2 30 0.00064 42.1 2.9 35 147-181 165-200 (821)
331 TIGR00959 ffh signal recogniti 34.2 22 0.00047 40.0 1.7 18 164-181 99-116 (428)
332 PRK14729 miaA tRNA delta(2)-is 34.0 19 0.00041 38.6 1.1 45 166-232 6-50 (300)
333 PRK14532 adenylate kinase; Pro 33.9 18 0.0004 35.0 0.9 16 166-181 2-17 (188)
334 PF06005 DUF904: Protein of un 33.9 2.9E+02 0.0063 23.4 8.9 19 436-454 20-38 (72)
335 TIGR01360 aden_kin_iso1 adenyl 33.9 18 0.00038 34.7 0.8 16 166-181 5-20 (188)
336 cd01853 Toc34_like Toc34-like 33.8 19 0.00041 37.4 1.0 40 140-181 9-48 (249)
337 PF10412 TrwB_AAD_bind: Type I 33.5 13 0.00028 40.9 -0.2 17 165-181 16-32 (386)
338 PF04156 IncA: IncA protein; 33.5 2.4E+02 0.0052 27.5 8.8 12 443-454 90-101 (191)
339 KOG0739 AAA+-type ATPase [Post 33.5 18 0.00039 39.0 0.8 73 134-206 131-225 (439)
340 COG2900 SlyX Uncharacterized p 33.4 3E+02 0.0065 23.5 7.8 47 432-478 6-52 (72)
341 PRK10803 tol-pal system protei 33.3 1.3E+02 0.0028 31.6 7.1 42 432-473 59-100 (263)
342 PF08614 ATG16: Autophagy prot 33.3 1.1E+02 0.0024 30.4 6.4 31 440-470 115-145 (194)
343 TIGR01425 SRP54_euk signal rec 33.2 33 0.00071 38.7 2.8 18 164-181 100-117 (429)
344 cd01394 radB RadB. The archaea 33.2 29 0.00063 34.4 2.3 28 154-181 6-36 (218)
345 PHA01747 putative ATP-dependen 33.2 18 0.00038 40.0 0.7 30 152-181 178-207 (425)
346 PF05377 FlaC_arch: Flagella a 33.2 2.1E+02 0.0046 23.1 6.6 31 436-466 9-39 (55)
347 PRK14951 DNA polymerase III su 32.9 24 0.00051 41.6 1.7 41 134-181 14-55 (618)
348 KOG0729 26S proteasome regulat 32.9 21 0.00046 37.8 1.2 42 35-76 23-64 (435)
349 TIGR03346 chaperone_ClpB ATP-d 32.7 32 0.00069 42.1 2.8 37 145-181 570-612 (852)
350 PRK14721 flhF flagellar biosyn 32.7 16 0.00035 40.9 0.4 18 164-181 191-208 (420)
351 KOG2228 Origin recognition com 32.6 32 0.0007 37.6 2.5 73 143-218 31-119 (408)
352 CHL00195 ycf46 Ycf46; Provisio 32.6 17 0.00036 41.6 0.4 17 165-181 260-276 (489)
353 COG5019 CDC3 Septin family pro 32.5 24 0.00052 38.8 1.5 17 162-178 21-37 (373)
354 TIGR00231 small_GTP small GTP- 32.5 16 0.00034 32.5 0.2 16 166-181 3-18 (161)
355 PRK15429 formate hydrogenlyase 32.5 23 0.00051 41.9 1.6 44 133-181 373-416 (686)
356 PRK06851 hypothetical protein; 32.4 29 0.00063 38.2 2.2 28 154-181 20-47 (367)
357 TIGR03117 cas_csf4 CRISPR-asso 32.3 26 0.00057 41.4 2.0 32 145-181 2-33 (636)
358 COG3879 Uncharacterized protei 32.3 2.6E+02 0.0055 29.3 8.8 61 404-468 24-84 (247)
359 PRK04040 adenylate kinase; Pro 32.3 19 0.00041 35.7 0.7 16 166-181 4-19 (188)
360 cd00820 PEPCK_HprK Phosphoenol 32.3 17 0.00038 33.0 0.4 16 166-181 17-32 (107)
361 TIGR01970 DEAH_box_HrpB ATP-de 32.1 30 0.00066 42.1 2.5 27 153-181 8-34 (819)
362 cd01393 recA_like RecA is a b 31.9 34 0.00074 34.0 2.5 28 154-181 6-36 (226)
363 PRK00300 gmk guanylate kinase; 31.8 17 0.00038 35.6 0.4 17 165-181 6-22 (205)
364 PRK06762 hypothetical protein; 31.6 21 0.00045 33.8 0.9 15 166-180 4-18 (166)
365 KOG0343 RNA Helicase [RNA proc 31.5 37 0.00081 39.3 2.9 29 151-181 94-123 (758)
366 TIGR01613 primase_Cterm phage/ 31.5 20 0.00044 37.9 0.8 37 153-200 62-101 (304)
367 cd02025 PanK Pantothenate kina 31.4 14 0.0003 37.5 -0.4 13 169-181 4-16 (220)
368 PF12718 Tropomyosin_1: Tropom 31.4 3.2E+02 0.007 26.0 8.9 37 433-469 34-70 (143)
369 TIGR02338 gimC_beta prefoldin, 31.3 1.8E+02 0.004 26.1 6.9 35 437-471 70-104 (110)
370 PF07693 KAP_NTPase: KAP famil 31.1 29 0.00064 36.4 2.0 29 153-181 9-37 (325)
371 TIGR00929 VirB4_CagE type IV s 31.1 18 0.00038 43.4 0.3 18 164-181 434-451 (785)
372 PRK05342 clpX ATP-dependent pr 31.1 34 0.00074 38.2 2.6 18 164-181 108-125 (412)
373 PF10923 DUF2791: P-loop Domai 31.1 36 0.00078 38.2 2.7 35 147-181 32-66 (416)
374 KOG0976 Rho/Rac1-interacting s 31.0 2E+02 0.0044 34.9 8.6 56 426-481 98-153 (1265)
375 PRK14957 DNA polymerase III su 30.9 26 0.00056 40.7 1.6 16 166-181 40-55 (546)
376 PRK14970 DNA polymerase III su 30.7 32 0.00069 37.3 2.2 27 155-181 29-56 (367)
377 PRK13889 conjugal transfer rel 30.7 25 0.00055 43.6 1.5 28 153-181 352-379 (988)
378 PRK14530 adenylate kinase; Pro 30.6 21 0.00046 35.6 0.7 16 166-181 5-20 (215)
379 TIGR01010 BexC_CtrB_KpsE polys 30.6 2.5E+02 0.0055 30.4 9.1 68 383-455 126-198 (362)
380 PF12774 AAA_6: Hydrolytic ATP 30.3 38 0.00083 34.8 2.6 45 165-209 33-88 (231)
381 PRK14527 adenylate kinase; Pro 30.2 23 0.0005 34.6 0.9 35 165-199 7-41 (191)
382 KOG0951 RNA helicase BRR2, DEA 30.2 67 0.0014 40.7 4.8 32 149-180 310-341 (1674)
383 PF04548 AIG1: AIG1 family; I 30.1 21 0.00045 35.7 0.6 16 166-181 2-17 (212)
384 COG4096 HsdR Type I site-speci 30.1 44 0.00096 40.4 3.3 36 146-182 166-203 (875)
385 PRK03839 putative kinase; Prov 30.1 22 0.00047 34.3 0.7 14 167-180 3-16 (180)
386 TIGR01351 adk adenylate kinase 29.9 22 0.00048 35.3 0.8 35 167-201 2-36 (210)
387 PF00025 Arf: ADP-ribosylation 29.9 35 0.00077 32.8 2.2 28 154-181 3-31 (175)
388 TIGR03881 KaiC_arch_4 KaiC dom 29.9 34 0.00073 34.2 2.1 27 155-181 8-37 (229)
389 TIGR02639 ClpA ATP-dependent C 29.8 26 0.00056 42.0 1.4 32 152-183 191-222 (731)
390 PRK10884 SH3 domain-containing 29.8 3.1E+02 0.0067 27.9 8.9 8 447-454 138-145 (206)
391 KOG0971 Microtubule-associated 29.7 4.9E+02 0.011 32.2 11.5 50 446-495 999-1048(1243)
392 COG0467 RAD55 RecA-superfamily 29.6 33 0.00071 35.3 2.0 25 156-180 12-39 (260)
393 PF12718 Tropomyosin_1: Tropom 29.6 2.1E+02 0.0045 27.3 7.2 43 435-477 22-64 (143)
394 PF10146 zf-C4H2: Zinc finger- 29.5 2.8E+02 0.0061 28.7 8.7 27 439-465 44-70 (230)
395 TIGR02894 DNA_bind_RsfA transc 29.5 3.1E+02 0.0067 26.9 8.3 32 435-466 112-143 (161)
396 PRK09039 hypothetical protein; 29.4 2.5E+02 0.0054 30.7 8.8 35 436-470 146-180 (343)
397 PRK10865 protein disaggregatio 29.4 20 0.00043 43.8 0.4 43 134-183 176-218 (857)
398 KOG0652 26S proteasome regulat 29.4 24 0.00053 37.3 0.9 15 166-180 207-221 (424)
399 KOG1547 Septin CDC10 and relat 29.3 50 0.0011 34.6 3.1 28 153-180 34-62 (336)
400 PRK14962 DNA polymerase III su 29.3 34 0.00073 39.0 2.1 22 160-181 31-53 (472)
401 PF04977 DivIC: Septum formati 29.2 2E+02 0.0044 23.6 6.4 26 435-460 25-50 (80)
402 PRK10078 ribose 1,5-bisphospho 29.2 20 0.00044 34.9 0.3 16 166-181 4-19 (186)
403 TIGR03263 guanyl_kin guanylate 28.9 27 0.00059 33.4 1.2 16 166-181 3-18 (180)
404 PF14532 Sigma54_activ_2: Sigm 28.9 24 0.00053 32.6 0.8 20 162-181 19-38 (138)
405 PRK15455 PrkA family serine pr 28.9 37 0.0008 39.8 2.4 44 131-178 70-117 (644)
406 COG1126 GlnQ ABC-type polar am 28.8 21 0.00045 36.8 0.3 14 168-181 32-45 (240)
407 COG1136 SalX ABC-type antimicr 28.8 20 0.00043 36.9 0.2 15 167-181 34-48 (226)
408 PRK11608 pspF phage shock prot 28.8 33 0.00071 36.9 1.9 42 135-181 5-46 (326)
409 cd02027 APSK Adenosine 5'-phos 28.7 24 0.00052 33.3 0.7 15 167-181 2-16 (149)
410 PRK04406 hypothetical protein; 28.7 3.7E+02 0.008 22.9 9.3 43 436-478 6-48 (75)
411 TIGR02767 TraG-Ti Ti-type conj 28.5 27 0.00058 41.2 1.2 17 165-181 212-228 (623)
412 TIGR01243 CDC48 AAA family ATP 28.5 35 0.00075 40.9 2.2 17 165-181 213-229 (733)
413 PRK11131 ATP-dependent RNA hel 28.5 42 0.00091 42.8 2.9 33 147-181 74-106 (1294)
414 KOG0994 Extracellular matrix g 28.1 1.2E+02 0.0026 38.1 6.4 120 343-472 1516-1636(1758)
415 cd03274 ABC_SMC4_euk Eukaryoti 28.1 22 0.00048 35.7 0.4 16 166-181 27-42 (212)
416 PF12709 Kinetocho_Slk19: Cent 28.0 2.4E+02 0.0052 24.9 6.6 29 432-460 47-75 (87)
417 KOG0745 Putative ATP-dependent 27.8 27 0.00058 39.5 0.9 16 166-181 228-243 (564)
418 COG0606 Predicted ATPase with 27.8 25 0.00053 40.0 0.7 41 154-199 190-231 (490)
419 PRK00279 adk adenylate kinase; 27.7 26 0.00056 35.0 0.8 15 166-180 2-16 (215)
420 KOG0348 ATP-dependent RNA heli 27.7 34 0.00074 39.4 1.8 26 153-180 165-190 (708)
421 PHA02774 E1; Provisional 27.6 42 0.0009 39.3 2.5 27 155-181 423-451 (613)
422 PRK15424 propionate catabolism 27.6 41 0.00089 39.0 2.5 44 133-181 216-259 (538)
423 KOG4005 Transcription factor X 27.5 3.4E+02 0.0073 28.3 8.5 28 430-457 86-113 (292)
424 TIGR01587 cas3_core CRISPR-ass 27.4 27 0.00059 37.4 0.9 15 167-181 2-16 (358)
425 TIGR02236 recomb_radA DNA repa 27.4 43 0.00093 35.4 2.4 27 155-181 83-112 (310)
426 TIGR03346 chaperone_ClpB ATP-d 27.4 24 0.00051 43.1 0.5 32 152-183 182-213 (852)
427 TIGR01074 rep ATP-dependent DN 27.4 25 0.00055 41.3 0.8 20 164-183 14-33 (664)
428 PF08317 Spc7: Spc7 kinetochor 27.4 1.5E+02 0.0033 31.9 6.7 18 185-202 6-23 (325)
429 cd00071 GMPK Guanosine monopho 27.4 29 0.00062 32.4 1.0 15 167-181 2-16 (137)
430 PF04201 TPD52: Tumour protein 27.4 1.8E+02 0.0039 28.5 6.4 36 435-470 30-65 (162)
431 PRK13721 conjugal transfer ATP 27.3 22 0.00048 43.3 0.3 18 164-181 449-466 (844)
432 PF01926 MMR_HSR1: 50S ribosom 27.3 20 0.00043 31.7 -0.1 15 167-181 2-16 (116)
433 cd03240 ABC_Rad50 The catalyti 27.2 23 0.0005 35.3 0.3 16 166-181 24-39 (204)
434 PRK12727 flagellar biosynthesi 27.2 23 0.0005 41.0 0.3 18 165-182 351-368 (559)
435 PRK13873 conjugal transfer ATP 27.0 20 0.00043 43.5 -0.2 16 166-181 443-458 (811)
436 PF06156 DUF972: Protein of un 27.0 4.3E+02 0.0094 24.0 8.5 26 435-460 9-34 (107)
437 TIGR01967 DEAH_box_HrpA ATP-de 27.0 48 0.001 42.3 3.1 33 147-181 67-99 (1283)
438 PF07926 TPR_MLP1_2: TPR/MLP1/ 26.9 1.7E+02 0.0036 27.3 6.0 40 51-90 92-131 (132)
439 PRK10689 transcription-repair 26.9 43 0.00094 42.3 2.7 18 164-181 621-638 (1147)
440 PF11853 DUF3373: Protein of u 26.9 88 0.0019 35.8 4.8 23 435-457 32-54 (489)
441 PF10186 Atg14: UV radiation r 26.9 2.6E+02 0.0057 28.8 8.2 13 347-359 18-30 (302)
442 TIGR02768 TraA_Ti Ti-type conj 26.8 33 0.00071 41.3 1.6 29 153-182 358-386 (744)
443 TIGR02688 conserved hypothetic 26.8 50 0.0011 37.3 2.9 44 157-203 204-251 (449)
444 COG0324 MiaA tRNA delta(2)-iso 26.8 30 0.00065 37.2 1.1 47 166-233 5-51 (308)
445 PF10805 DUF2730: Protein of u 26.7 3.3E+02 0.0071 24.5 7.7 43 433-475 48-92 (106)
446 CHL00095 clpC Clp protease ATP 26.7 46 0.001 40.5 2.8 38 144-181 513-556 (821)
447 PF04156 IncA: IncA protein; 26.6 4.2E+02 0.009 25.8 9.1 28 435-462 89-116 (191)
448 PF01745 IPT: Isopentenyl tran 26.6 26 0.00056 36.0 0.6 15 167-181 4-18 (233)
449 KOG0742 AAA+-type ATPase [Post 26.6 30 0.00065 38.8 1.1 14 166-179 386-399 (630)
450 TIGR02329 propionate_PrpR prop 26.6 41 0.00089 38.8 2.2 45 132-181 208-252 (526)
451 PRK14953 DNA polymerase III su 26.5 38 0.00083 38.7 2.0 17 165-181 39-55 (486)
452 TIGR01447 recD exodeoxyribonuc 26.5 32 0.0007 40.2 1.4 27 154-182 152-178 (586)
453 PRK09401 reverse gyrase; Revie 26.4 43 0.00093 42.5 2.5 25 154-180 87-111 (1176)
454 TIGR00382 clpX endopeptidase C 26.4 43 0.00093 37.5 2.3 17 165-181 117-133 (413)
455 TIGR03238 dnd_assoc_3 dnd syst 26.4 33 0.00072 39.2 1.4 31 152-182 14-50 (504)
456 TIGR03878 thermo_KaiC_2 KaiC d 26.3 42 0.00092 34.8 2.1 17 164-180 36-52 (259)
457 COG1382 GimC Prefoldin, chaper 26.3 3.1E+02 0.0068 25.6 7.5 40 433-472 69-108 (119)
458 PRK13853 type IV secretion sys 26.3 22 0.00048 43.0 0.0 17 165-181 427-443 (789)
459 COG4942 Membrane-bound metallo 26.2 5.5E+02 0.012 29.0 10.7 47 436-482 173-223 (420)
460 PRK14956 DNA polymerase III su 26.2 36 0.00077 39.0 1.6 17 165-181 41-57 (484)
461 PRK00091 miaA tRNA delta(2)-is 26.2 30 0.00065 37.2 1.0 15 166-180 6-20 (307)
462 cd00890 Prefoldin Prefoldin is 26.2 2.4E+02 0.0052 25.4 6.9 37 430-466 90-126 (129)
463 PF10211 Ax_dynein_light: Axon 26.1 2.4E+02 0.0052 28.1 7.3 31 438-468 124-154 (189)
464 PLN02200 adenylate kinase fami 26.1 30 0.00064 35.5 0.9 36 165-200 44-79 (234)
465 TIGR02338 gimC_beta prefoldin, 26.1 2.8E+02 0.0061 24.9 7.2 39 429-467 69-107 (110)
466 TIGR00235 udk uridine kinase. 26.0 28 0.00061 34.5 0.7 17 165-181 7-23 (207)
467 PF02996 Prefoldin: Prefoldin 26.0 2.4E+02 0.0052 25.2 6.8 41 427-467 77-117 (120)
468 cd03279 ABC_sbcCD SbcCD and ot 25.9 26 0.00056 35.0 0.4 17 165-181 29-45 (213)
469 cd03115 SRP The signal recogni 25.9 25 0.00055 33.5 0.3 15 167-181 3-17 (173)
470 PRK14701 reverse gyrase; Provi 25.8 56 0.0012 42.9 3.4 25 153-179 85-109 (1638)
471 COG1122 CbiO ABC-type cobalt t 25.8 30 0.00065 35.7 0.9 17 165-181 31-47 (235)
472 PRK11388 DNA-binding transcrip 25.8 34 0.00074 40.1 1.5 45 132-181 321-365 (638)
473 PHA02530 pseT polynucleotide k 25.8 30 0.00064 36.2 0.8 17 165-181 3-19 (300)
474 PRK05480 uridine/cytidine kina 25.7 25 0.00053 34.8 0.2 18 164-181 6-23 (209)
475 PF08172 CASP_C: CASP C termin 25.7 2.2E+02 0.0048 29.7 7.2 29 434-462 93-121 (248)
476 PRK15422 septal ring assembly 25.6 4.5E+02 0.0097 22.8 7.9 69 424-492 1-72 (79)
477 PRK02496 adk adenylate kinase; 25.6 30 0.00065 33.4 0.8 15 167-181 4-18 (184)
478 PRK11034 clpA ATP-dependent Cl 25.5 35 0.00075 41.2 1.5 31 153-183 196-226 (758)
479 PRK06305 DNA polymerase III su 25.5 34 0.00074 38.6 1.3 41 134-181 15-56 (451)
480 PF13118 DUF3972: Protein of u 25.3 4.3E+02 0.0092 25.0 8.2 48 432-479 76-123 (126)
481 TIGR02759 TraD_Ftype type IV c 25.3 25 0.00054 41.0 0.2 15 166-180 178-192 (566)
482 TIGR02655 circ_KaiC circadian 25.3 42 0.00091 38.2 2.0 26 155-180 9-37 (484)
483 TIGR01650 PD_CobS cobaltochela 25.2 44 0.00095 36.3 2.0 41 139-181 39-81 (327)
484 COG1579 Zn-ribbon protein, pos 25.2 3.8E+02 0.0082 28.0 8.7 28 437-464 106-133 (239)
485 PRK13897 type IV secretion sys 25.0 45 0.00098 39.2 2.2 28 386-413 363-390 (606)
486 PRK13850 type IV secretion sys 24.9 41 0.0009 40.0 1.9 20 162-181 137-156 (670)
487 PRK04296 thymidine kinase; Pro 24.8 21 0.00046 35.1 -0.4 17 166-182 4-20 (190)
488 PRK05563 DNA polymerase III su 24.7 45 0.00098 38.8 2.2 35 144-181 20-55 (559)
489 TIGR00174 miaA tRNA isopenteny 24.7 33 0.00072 36.5 1.0 15 167-181 2-16 (287)
490 TIGR00580 mfd transcription-re 24.7 46 0.001 41.1 2.3 20 162-181 470-489 (926)
491 cd02019 NK Nucleoside/nucleoti 24.7 36 0.00078 27.8 1.0 15 167-181 2-16 (69)
492 PF02367 UPF0079: Uncharacteri 24.6 32 0.0007 32.0 0.8 25 156-181 8-32 (123)
493 PRK14528 adenylate kinase; Pro 24.6 32 0.00069 33.7 0.8 15 167-181 4-18 (186)
494 cd00227 CPT Chloramphenicol (C 24.5 33 0.00071 33.0 0.9 16 166-181 4-19 (175)
495 PRK06851 hypothetical protein; 24.5 36 0.00079 37.5 1.2 28 154-181 204-231 (367)
496 PF01920 Prefoldin_2: Prefoldi 24.4 2.9E+02 0.0064 23.9 6.9 33 437-469 65-97 (106)
497 PRK07667 uridine kinase; Provi 24.4 53 0.0011 32.3 2.3 29 150-179 4-32 (193)
498 COG0563 Adk Adenylate kinase a 24.4 33 0.00071 33.8 0.8 13 167-179 3-15 (178)
499 PF06698 DUF1192: Protein of u 24.3 2.6E+02 0.0057 22.9 5.8 36 436-471 23-58 (59)
500 PRK13891 conjugal transfer pro 24.3 29 0.00063 42.4 0.5 20 162-181 486-505 (852)
No 1
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=7.5e-91 Score=780.71 Aligned_cols=404 Identities=32% Similarity=0.513 Sum_probs=349.6
Q ss_pred CCEEEEEEeCCCCcccCC-CccccEEecCCEEEEEeCC-c--eEEEEeceeeCC-------CCChhhHHHhh-HHHHHHh
Q 006826 92 GCIRVFCRVRSFLVTGRR-VIHEPVLTELEKVVVRSGG-S--KKEFGFDKVFNQ-------AASQEDVFVEV-EPILRSA 159 (630)
Q Consensus 92 G~IrV~~RvRP~~~~e~~-~~~~~v~~~~~~v~v~~~~-~--~~~F~FD~VF~~-------~atQ~eVf~~v-~plV~sv 159 (630)
.+|.|.|||||++..|.. ...+++.+.+++.++.... . ...|+||++||. .++|..||+++ .++|+.+
T Consensus 4 ssv~VAVRVRPfn~rE~s~~~k~Vvqm~gn~ttii~~~~~k~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL~~A 83 (1221)
T KOG0245|consen 4 SSVKVAVRVRPFNAREKSRDAKCVVQMQGNTTTIINPKGSKDAPKFTFDYSYWSHDSEDPHFASQKQVYEDLGREMLDHA 83 (1221)
T ss_pred CceEEEEEeccchhhhhhcccceEEEecCCceeeecCCCcccCCceecceeeecCCCCCCchhhHHHHHHHHhHHHHHHH
Confidence 479999999999986643 4566677777777766433 2 266999999985 47899999999 9999999
Q ss_pred hcCcceeEEecccCCCCcceeecCCC--CCCCchhHHHHHHHHHHhcC--CCceEEEEEeEEEEecceeeecCC-CCCcc
Q 006826 160 LDGHNVCVLAYGQTGTGKTFTMDGTS--DQPGIVPRALEELFRQAALD--NSSSVTFSMSMLEVYMGSVRDLLA-PKPVF 234 (630)
Q Consensus 160 l~GyN~~IfaYGqTGSGKTyTM~G~~--~~~GIIpRal~~LF~~~~~~--~~~~~~v~vS~lEIYnE~I~DLL~-~~~~~ 234 (630)
|+|||+||||||||||||||||+|.. +++|||||+|++||.++... .+..|.|.|||+|||||+|+|||+ |.+
T Consensus 84 fEGYN~ClFAYGQTGSGKSYTMMG~~~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p~~-- 161 (1221)
T KOG0245|consen 84 FEGYNVCLFAYGQTGSGKSYTMMGFQEPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAPKS-- 161 (1221)
T ss_pred hcccceEEEEeccCCCCcceeeeccCCCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhCCCC--
Confidence 99999999999999999999999987 99999999999999987644 378999999999999999999998 433
Q ss_pred chhhhhcccCeeEEeCCCCCEEEcCcEEEEcCChHHHHHHHHhhhhcccccccCCCCCCCCcEEEEEEEEEEecCCCC--
Q 006826 235 KAYEAATRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDALE-- 312 (630)
Q Consensus 235 ~~~~~~~~~~L~i~ed~~g~v~v~glt~v~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~I~v~~~~~~~~-- 312 (630)
+.+|++++++.-|+||++|+.+.|+|+.|+..|++.|++.|++|+|+||+.|||||+||+|.+.+......
T Consensus 162 -------kg~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~~ 234 (1221)
T KOG0245|consen 162 -------KGGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDTG 234 (1221)
T ss_pred -------CCCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccCC
Confidence 45899999999999999999999999999999999999999999999999999999999999988643332
Q ss_pred -CceEEeEeEEEecCCCccccccCCCcchhhhhhhhhHhHHHHHHHHHHHHhCC-------CCccCCCCchhhhhhcccC
Q 006826 313 -AKTEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKR-------GHVPYRNSKLTQILRDSLG 384 (630)
Q Consensus 313 -~~~~~skL~lVDLAGSEr~~kt~a~g~rl~E~~~INkSLsaLg~VI~aL~~~~-------~hiPYRdSKLT~LLqdsLg 384 (630)
....+|+|+|||||||||+..+|+.|+||+||.+|||||.+||.||+||++.+ .+||||||.|||||+++||
T Consensus 235 l~sek~SKIsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnLG 314 (1221)
T KOG0245|consen 235 LDSEKVSKISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKENLG 314 (1221)
T ss_pred CcceeeeeeeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHHhcC
Confidence 36788999999999999999999999999999999999999999999997533 4899999999999999999
Q ss_pred CCceeeeEEecCCCCCcHHHhHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHHHHHHH----------------
Q 006826 385 DGSKVLMLVHASPCEEDVGETICSLSFAKRARGIESNRELSEDLKKRREIRMAELEEDMREAEA---------------- 448 (630)
Q Consensus 385 GnskT~mI~~VSP~~~~~~ETlsTLrFA~rar~I~~~~~~~~~~~~~~~~~i~~L~~el~~l~~---------------- 448 (630)
|||||+||+++||++.||+|||+|||||.|||+|++++.+|+|+.. +.|.+|.+|+..|+.
T Consensus 315 GNSKTaMIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdpna---KLIRELreEv~rLksll~~~~~~~~~~~~~p 391 (1221)
T KOG0245|consen 315 GNSKTAMIAALSPADINYEETLSTLRYADRAKQIVNNAVVNEDPNA---KLIRELREEVARLKSLLRAQGLGDIAVEGSP 391 (1221)
T ss_pred CcchhhhhhccChhhcChHHHHHHHHHhhHhhhhhccceeCCCccH---HHHHHHHHHHHHHHHHHhccccccccccCCc
Confidence 9999999999999999999999999999999999999999999876 357778777776654
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhh-----------hcc--C--CchhhHHHhhcCcccccccc
Q 006826 449 -------ECQNVRNQIKEVESLLSEKKKLFSAACQSLEDEE-----------KSF--V--SPKENLKEAAETPKASKNVT 506 (630)
Q Consensus 449 -------e~~~l~~qi~~~e~~l~e~~~~~~~~~~~l~~e~-----------~~~--~--~~~~~l~~~~~~~~~~~~~~ 506 (630)
++..+++++++-|..+.|..+.|+++....++.. .++ + +...+|.++++||..++...
T Consensus 392 ~~~~~~~~~e~~~~~L~E~Ek~mael~etW~EKl~~aEair~e~~~~L~emGva~~~D~~kk~phLVNLneDPllSe~Ll 471 (1221)
T KOG0245|consen 392 SALLSQPEIEELRERLQETEKIMAELNETWEEKLREAEAIRMEREALLAEMGVAVREDGGKKTPHLVNLNEDPLLSECLL 471 (1221)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCceeeecCCccCcceeccCCCchhhccEE
Confidence 3667788888888888887777766554432211 111 1 25578999999999988766
Q ss_pred c
Q 006826 507 K 507 (630)
Q Consensus 507 ~ 507 (630)
+
T Consensus 472 Y 472 (1221)
T KOG0245|consen 472 Y 472 (1221)
T ss_pred E
Confidence 5
No 2
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.2e-89 Score=756.41 Aligned_cols=350 Identities=39% Similarity=0.582 Sum_probs=309.2
Q ss_pred CCEEEEEEeCCCCcccCC-CccccEEecCC--EEEEEeC-----CceEEEEeceeeCCCCChhhHHHhh-HHHHHHhhcC
Q 006826 92 GCIRVFCRVRSFLVTGRR-VIHEPVLTELE--KVVVRSG-----GSKKEFGFDKVFNQAASQEDVFVEV-EPILRSALDG 162 (630)
Q Consensus 92 G~IrV~~RvRP~~~~e~~-~~~~~v~~~~~--~v~v~~~-----~~~~~F~FD~VF~~~atQ~eVf~~v-~plV~svl~G 162 (630)
-+|+|++|+||+...+.. ....++.+++. .+.+..+ +..+.|+||+||+++++|++||..+ .|+|++|++|
T Consensus 5 ~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ftfD~vf~~~stQ~dvy~~~~~~lV~svl~G 84 (574)
T KOG4280|consen 5 CKVKVVVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVAGIEGKPKSFTFDAVFDSDSTQDDVYQETVAPLVESVLEG 84 (574)
T ss_pred cceeEEEeecCCCchhhhhhhccccccccccceeeecCCcccccCCCCCceeeeeecCCCCHHHHHHHHhHHHHHHHhcc
Confidence 579999999999885432 33444555543 3444332 2347899999999999999999987 9999999999
Q ss_pred cceeEEecccCCCCcceeecCC-CCCCCchhHHHHHHHHHHhcCC-CceEEEEEeEEEEecceeeecCCCCCccchhhhh
Q 006826 163 HNVCVLAYGQTGTGKTFTMDGT-SDQPGIVPRALEELFRQAALDN-SSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAA 240 (630)
Q Consensus 163 yN~~IfaYGqTGSGKTyTM~G~-~~~~GIIpRal~~LF~~~~~~~-~~~~~v~vS~lEIYnE~I~DLL~~~~~~~~~~~~ 240 (630)
||+||||||||||||||||.|+ ++..|||||++++||..+.... ...|.|+|||+|||||.|+|||++.+.
T Consensus 85 yNgtvFaYGQTGsGKTyTM~G~~~~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~~~~------- 157 (574)
T KOG4280|consen 85 YNGTVFAYGQTGSGKTYTMIGPDPELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLSPVNP------- 157 (574)
T ss_pred cCceEEEeccCCCCCceEeeCCChhhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhCccCc-------
Confidence 9999999999999999999999 6778999999999999988765 447999999999999999999998764
Q ss_pred cccCeeEEeCCCCCEEEcCcEEEEcCChHHHHHHHHhhhhcccccccCCCCCCCCcEEEEEEEEEEecCC--CCCceEEe
Q 006826 241 TRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDA--LEAKTEVS 318 (630)
Q Consensus 241 ~~~~L~i~ed~~g~v~v~glt~v~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~I~v~~~~~~--~~~~~~~s 318 (630)
..|.|+++++.||||+|++++.|.++++++.+|..|.++|++++|.||..|||||+||+|+|+..... .......|
T Consensus 158 --~~l~lre~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~~~~~~~~~~~~ 235 (574)
T KOG4280|consen 158 --KGLELREDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSEKSDGGLMSGRSS 235 (574)
T ss_pred --CCceeeEcCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeecccCCCccccccc
Confidence 36899999999999999999999999999999999999999999999999999999999999983321 22456779
Q ss_pred EeEEEecCCCccccccCCCcchhhhhhhhhHhHHHHHHHHHHHHhCCC-CccCCCCchhhhhhcccCCCceeeeEEecCC
Q 006826 319 KLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKRG-HVPYRNSKLTQILRDSLGDGSKVLMLVHASP 397 (630)
Q Consensus 319 kL~lVDLAGSEr~~kt~a~g~rl~E~~~INkSLsaLg~VI~aL~~~~~-hiPYRdSKLT~LLqdsLgGnskT~mI~~VSP 397 (630)
+|+|||||||||..++|+.|++++||.+||+||++||+||.||.++.. ||||||||||+||||||||||||+||+||||
T Consensus 236 rlnlvDLagsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~~~HIPYRdSkLT~LLqdSLGGN~kT~mianvsp 315 (574)
T KOG4280|consen 236 KLNLVDLAGSERQSKTGAEGERLKEATNINLSLSALGNVISALVDGSKTHIPYRDSKLTRLLQDSLGGNSKTTMIANVSP 315 (574)
T ss_pred eeeeeeccchhhhcccCccchhhhhhcccchhHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHcCCCceEEEEEecCc
Confidence 999999999999999999999999999999999999999999998876 9999999999999999999999999999999
Q ss_pred CCCcHHHhHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 398 CEEDVGETICSLSFAKRARGIESNRELSEDLKKRREIRMAELEEDMREAEAECQNV 453 (630)
Q Consensus 398 ~~~~~~ETlsTLrFA~rar~I~~~~~~~~~~~~~~~~~i~~L~~el~~l~~e~~~l 453 (630)
+..+++||++||+||+||+.|+|.+.+|++++. ..+.+|+++|..|+.++...
T Consensus 316 ~~~~~~ETlsTLrfA~Rak~I~nk~~ined~~~---~~~~~lq~ei~~Lk~~l~~~ 368 (574)
T KOG4280|consen 316 SSDNYEETLSTLRFAQRAKAIKNKPVINEDPKD---ALLRELQEEIERLKKELDPG 368 (574)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhccccccCCcch---hhHHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999999999873 34555666666666655554
No 3
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=2.5e-89 Score=775.64 Aligned_cols=350 Identities=47% Similarity=0.669 Sum_probs=315.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCEEEEEEeCCCCcccCCCccccE-EecC-CEEEEEeCCc-----eEEEEece
Q 006826 65 EIVELRLKKRRLDEKRREALNKILDIKGCIRVFCRVRSFLVTGRRVIHEPV-LTEL-EKVVVRSGGS-----KKEFGFDK 137 (630)
Q Consensus 65 ~~~~l~~~~~~~~~~Rr~l~n~~~elkG~IrV~~RvRP~~~~e~~~~~~~v-~~~~-~~v~v~~~~~-----~~~F~FD~ 137 (630)
....+..++ .++..||+|||+|+||||||||||||||+.+++.......+ ..+. ..+.+..... ...|.||+
T Consensus 288 ~~~~l~~~~-~e~~~r~kL~N~i~eLkGnIRV~CRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fdk 366 (670)
T KOG0239|consen 288 LEENLVEKK-KEKEERRKLHNEILELKGNIRVFCRVRPLLPSEKQRLQSKVIDTEEQGEVQVDSPDKGDKLEPQSFKFDK 366 (670)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHhhcCceEEEEecCCCccccccccccccccCCcceeEeecCCCCCCCccccceeee
Confidence 333444445 66699999999999999999999999999998766433223 3322 2355553221 13599999
Q ss_pred eeCCCCChhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceeecC-CCCCCCchhHHHHHHHHHHhcCC-CceEEEEEe
Q 006826 138 VFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMDG-TSDQPGIVPRALEELFRQAALDN-SSSVTFSMS 215 (630)
Q Consensus 138 VF~~~atQ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM~G-~~~~~GIIpRal~~LF~~~~~~~-~~~~~v~vS 215 (630)
||+|.++|++||.++.|+|++||||||+||||||||||||||||.| +++++|||||++++||..+.... +|.|.+.++
T Consensus 367 Vf~p~~sQ~~VF~e~~~lv~S~lDGYnVCIFAYGQTGSGKTyTM~G~~~~~~Giipral~~lF~~~~~~~~g~~y~~~~s 446 (670)
T KOG0239|consen 367 VFGPLASQDDVFEEVSPLVQSALDGYNVCIFAYGQTGSGKTYTMSGPTPEDPGIIPRALEKLFRTITSLKSGWKYDKTVS 446 (670)
T ss_pred ecCCcccHHHHHHHHHHHHHHHhcCcceeEEEecccCCCccccccCCCcccCCccHHHHHHHHHHHHhhccCceEEeeee
Confidence 9999999999999999999999999999999999999999999999 69999999999999999766544 899999999
Q ss_pred EEEEecceeeecCCCCCccchhhhhcccCeeEEeCCCCCEEEcCcEEEEcCChHHHHHHHHhhhhcccccccCCCCCCCC
Q 006826 216 MLEVYMGSVRDLLAPKPVFKAYEAATRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSR 295 (630)
Q Consensus 216 ~lEIYnE~I~DLL~~~~~~~~~~~~~~~~L~i~ed~~g~v~v~glt~v~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSR 295 (630)
|+|||||.|+|||++.+. ...+.|+++++|..+|.|++.+.|.+.+++..+++.|..+|++++|.+|++|||
T Consensus 447 ~~EIYNe~i~DlL~~~~~--------~~k~~I~~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSR 518 (670)
T KOG0239|consen 447 MLEIYNEAIRDLLSDESY--------VGKLEIVDDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSR 518 (670)
T ss_pred hhHHHHHHHHHhcccccc--------ccceeEEEcCCCceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhc
Confidence 999999999999987741 136899999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEEEEEecCCCCCceEEeEeEEEecCCCccccccCCCcchhhhhhhhhHhHHHHHHHHHHHHhCCCCccCCCCch
Q 006826 296 SHCLMRITIFRHGDALEAKTEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKRGHVPYRNSKL 375 (630)
Q Consensus 296 SH~If~I~v~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~a~g~rl~E~~~INkSLsaLg~VI~aL~~~~~hiPYRdSKL 375 (630)
||+||+|+|...+..+ +....|.|+|||||||||+.+++++|+|++|+++||+||++||+||.||+.+..|||||||||
T Consensus 519 SH~v~~v~v~g~~~~t-~~~~~g~l~LVDLAGSER~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~k~~HiPyRNSKL 597 (670)
T KOG0239|consen 519 SHLVFRVRIRGINELT-GIRVTGVLNLVDLAGSERVSKSGVTGERLKEAQNINKSLSALGDVISALASKRSHIPYRNSKL 597 (670)
T ss_pred cceEEEEEEeccccCc-ccccccceeEeecccCcccCcCCCchhhhHHHHHhchhhhhhHHHHHHHhhcCCCCcccccch
Confidence 9999999999886665 778889999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccCCCceeeeEEecCCCCCcHHHhHHHHHHHHHhhcccccccc
Q 006826 376 TQILRDSLGDGSKVLMLVHASPCEEDVGETICSLSFAKRARGIESNREL 424 (630)
Q Consensus 376 T~LLqdsLgGnskT~mI~~VSP~~~~~~ETlsTLrFA~rar~I~~~~~~ 424 (630)
|+||||||||++||+|+|+|||..+++.||+++|+||.|++.++.++..
T Consensus 598 T~lLq~sLGG~sKTLmfv~isP~~~~~~Etl~sL~FA~rv~~~~lG~a~ 646 (670)
T KOG0239|consen 598 TQLLQDSLGGDSKTLMFVNISPAAAALFETLCSLRFATRVRSVELGSAR 646 (670)
T ss_pred HHHhHhhhCCccceeeEEEeCccHHHHhhhhhccchHHHhhceeccccc
Confidence 9999999999999999999999999999999999999999999988765
No 4
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.1e-88 Score=776.49 Aligned_cols=329 Identities=36% Similarity=0.581 Sum_probs=294.2
Q ss_pred CCCEEEEEEeCCCCcccCCC-ccccEEecC--CEEEEEeC--Cc--eEEEEeceeeCCCCChhhHHHhh-HHHHHHhhcC
Q 006826 91 KGCIRVFCRVRSFLVTGRRV-IHEPVLTEL--EKVVVRSG--GS--KKEFGFDKVFNQAASQEDVFVEV-EPILRSALDG 162 (630)
Q Consensus 91 kG~IrV~~RvRP~~~~e~~~-~~~~v~~~~--~~v~v~~~--~~--~~~F~FD~VF~~~atQ~eVf~~v-~plV~svl~G 162 (630)
--||+|++||||++..|... ...+|..++ ..|.+... +. .+.|+||+||+|.+.|++||..+ .|+|..|+.|
T Consensus 48 ~~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~~~sk~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~eVl~G 127 (1041)
T KOG0243|consen 48 EVNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQTIASKQIDKTFTFDKVFGPESQQEDLYDQAVSPIIKEVLEG 127 (1041)
T ss_pred CCceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEecccccccccceeecceeeCcchhHHHHHHHHHHHHHHHHhcc
Confidence 36999999999999876543 344555554 34777654 33 58999999999999999999875 9999999999
Q ss_pred cceeEEecccCCCCcceeecC--------CCCCCCchhHHHHHHHHHHhcCCCceEEEEEeEEEEecceeeecCCCCCcc
Q 006826 163 HNVCVLAYGQTGTGKTFTMDG--------TSDQPGIVPRALEELFRQAALDNSSSVTFSMSMLEVYMGSVRDLLAPKPVF 234 (630)
Q Consensus 163 yN~~IfaYGqTGSGKTyTM~G--------~~~~~GIIpRal~~LF~~~~~~~~~~~~v~vS~lEIYnE~I~DLL~~~~~~ 234 (630)
||||||||||||+||||||+| .++++||||||+.+||+.+...+ .+|.|+|||+|+|||.|+|||++....
T Consensus 128 yNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~~-~EYsvKVSfLELYNEEl~DLLa~~~~~ 206 (1041)
T KOG0243|consen 128 YNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEAQG-AEYSVKVSFLELYNEELTDLLASEDTS 206 (1041)
T ss_pred CCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHhcC-CeEEEEEEehhhhhHHHHHhcCCcccc
Confidence 999999999999999999999 56789999999999999987664 899999999999999999999987652
Q ss_pred chhhhhcccCeeEEe-----CCCCCEEEcCcEEEEcCChHHHHHHHHhhhhcccccccCCCCCCCCcEEEEEEEEEEecC
Q 006826 235 KAYEAATRCNLNIQT-----DAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGD 309 (630)
Q Consensus 235 ~~~~~~~~~~L~i~e-----d~~g~v~v~glt~v~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~I~v~~~~~ 309 (630)
. ..+.+.. +.+|+|+|.|+.++.|.++.|++.+|.+|...|++|+|.||++|||||+||+|+|.....
T Consensus 207 ~-------~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~ 279 (1041)
T KOG0243|consen 207 D-------KKLRIKDDSTIVDGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKEN 279 (1041)
T ss_pred c-------cccccccCCcccCCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecC
Confidence 1 1122322 568999999999999999999999999999999999999999999999999999977654
Q ss_pred CCC--CceEEeEeEEEecCCCccccccCCCcchhhhhhhhhHhHHHHHHHHHHHHhCCCCccCCCCchhhhhhcccCCCc
Q 006826 310 ALE--AKTEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKRGHVPYRNSKLTQILRDSLGDGS 387 (630)
Q Consensus 310 ~~~--~~~~~skL~lVDLAGSEr~~kt~a~g~rl~E~~~INkSLsaLg~VI~aL~~~~~hiPYRdSKLT~LLqdsLgGns 387 (630)
..+ .-...|||+||||||||.++++||.+.|.+|++.||+||.+||+||+||.++.+|||||+|||||||||||||..
T Consensus 280 t~~geelvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe~s~HIPYRESKLTRLLQDSLGGkT 359 (1041)
T KOG0243|consen 280 TPEGEELVKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVEHSGHIPYRESKLTRLLQDSLGGKT 359 (1041)
T ss_pred CCcchhhHhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhCCCc
Confidence 443 235679999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeEEecCCCCCcHHHhHHHHHHHHHhhcccccccccHH
Q 006826 388 KVLMLVHASPCEEDVGETICSLSFAKRARGIESNRELSED 427 (630)
Q Consensus 388 kT~mI~~VSP~~~~~~ETlsTLrFA~rar~I~~~~~~~~~ 427 (630)
||+||+||||+..+++||++||.||.||++|+|+|.+|.-
T Consensus 360 KT~iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQk 399 (1041)
T KOG0243|consen 360 KTCIIATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQK 399 (1041)
T ss_pred eeEEEEEeCCCcccHHHHHHHHHHHHHhhhccCCCccchH
Confidence 9999999999999999999999999999999999999853
No 5
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=1.9e-84 Score=747.58 Aligned_cols=347 Identities=34% Similarity=0.511 Sum_probs=304.3
Q ss_pred CCCEEEEEEeCCCCcccCCCccccEEecCCEEEEEeCCceEEEEeceeeCCCCChhhHHHhh-HHHHHHhhcCcceeEEe
Q 006826 91 KGCIRVFCRVRSFLVTGRRVIHEPVLTELEKVVVRSGGSKKEFGFDKVFNQAASQEDVFVEV-EPILRSALDGHNVCVLA 169 (630)
Q Consensus 91 kG~IrV~~RvRP~~~~e~~~~~~~v~~~~~~v~v~~~~~~~~F~FD~VF~~~atQ~eVf~~v-~plV~svl~GyN~~Ifa 169 (630)
.++|+|||||||+...+. +...++.+.++.+.+. .+.|.||+||+++++|++||+.+ .|+|+++++|||+||||
T Consensus 97 ds~VkV~VRVRPl~~~E~-g~~iV~~~s~dsl~I~----~qtFtFD~VFdp~aTQedVFe~vv~PLV~svLdGyNaTIFA 171 (1320)
T PLN03188 97 DSGVKVIVRMKPLNKGEE-GEMIVQKMSNDSLTIN----GQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGFNSSVFA 171 (1320)
T ss_pred CCCeEEEEEcCCCCCccC-CCeeEEEcCCCeEEEe----CcEEeCCeeeCCCCCHHHHHHHHHHHHHHHHhcCCcceeec
Confidence 579999999999988653 2333344556666653 36899999999999999999997 99999999999999999
Q ss_pred cccCCCCcceeecCCC----------CCCCchhHHHHHHHHHHhc------CCCceEEEEEeEEEEecceeeecCCCCCc
Q 006826 170 YGQTGTGKTFTMDGTS----------DQPGIVPRALEELFRQAAL------DNSSSVTFSMSMLEVYMGSVRDLLAPKPV 233 (630)
Q Consensus 170 YGqTGSGKTyTM~G~~----------~~~GIIpRal~~LF~~~~~------~~~~~~~v~vS~lEIYnE~I~DLL~~~~~ 233 (630)
||||||||||||+|+. .++|||||++++||..+.. +..+.|.|+|||+|||||+|+|||++...
T Consensus 172 YGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI~DLLsp~~k 251 (1320)
T PLN03188 172 YGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQITDLLDPSQK 251 (1320)
T ss_pred CCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEeeecCcceeccccccC
Confidence 9999999999999963 5789999999999997753 23568999999999999999999987643
Q ss_pred cchhhhhcccCeeEEeCCCCCEEEcCcEEEEcCChHHHHHHHHhhhhcccccccCCCCCCCCcEEEEEEEEEEecCCC--
Q 006826 234 FKAYEAATRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDAL-- 311 (630)
Q Consensus 234 ~~~~~~~~~~~L~i~ed~~g~v~v~glt~v~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~I~v~~~~~~~-- 311 (630)
.|.|+++..++++|.|++++.|.+++++..+|..|..+|++++|.+|..|||||+||+|+|.......
T Consensus 252 ----------~L~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~Ves~~k~~~d 321 (1320)
T PLN03188 252 ----------NLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVAD 321 (1320)
T ss_pred ----------CceEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEEEEEeecccCC
Confidence 68999999999999999999999999999999999999999999999999999999999998643221
Q ss_pred -CCceEEeEeEEEecCCCccccccCCCcchhhhhhhhhHhHHHHHHHHHHHHh-----CCCCccCCCCchhhhhhcccCC
Q 006826 312 -EAKTEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRR-----KRGHVPYRNSKLTQILRDSLGD 385 (630)
Q Consensus 312 -~~~~~~skL~lVDLAGSEr~~kt~a~g~rl~E~~~INkSLsaLg~VI~aL~~-----~~~hiPYRdSKLT~LLqdsLgG 385 (630)
......|+|+|||||||||+.++++.|.+++|+.+||+||++||+||.+|+. +..||||||||||+||||+|||
T Consensus 322 g~ss~r~SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~HIPYRDSKLTrLLQDSLGG 401 (1320)
T PLN03188 322 GLSSFKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLLQESLGG 401 (1320)
T ss_pred CCcceEEEEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCCcCCCCcchHHHHHHHhcCC
Confidence 1335679999999999999999999999999999999999999999999975 3579999999999999999999
Q ss_pred CceeeeEEecCCCCCcHHHhHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 386 GSKVLMLVHASPCEEDVGETICSLSFAKRARGIESNRELSEDLKKRREIRMAELEEDMREAEAECQNVRNQ 456 (630)
Q Consensus 386 nskT~mI~~VSP~~~~~~ETlsTLrFA~rar~I~~~~~~~~~~~~~~~~~i~~L~~el~~l~~e~~~l~~q 456 (630)
||+|+|||||||+..+++||++||+||+||+.|++.+.+|+.... .+..|.+.|++|++|+..|+..
T Consensus 402 NSKTvMIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~~~~----~vn~LrelIr~Lk~EL~rLK~~ 468 (1320)
T PLN03188 402 NAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQD----DVNFLREVIRQLRDELQRVKAN 468 (1320)
T ss_pred CceEEEEEecCCchhhHHHHHHHHHHHHHHhhcCccceeccchhh----hHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999976543 2344556666666666666654
No 6
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=1.2e-84 Score=700.81 Aligned_cols=327 Identities=37% Similarity=0.556 Sum_probs=299.6
Q ss_pred CCCEEEEEEeCCCCcccCC-CccccEEec--CCEEEEEeCCceEEEEeceeeCCCCChhhHHHhh-HHHHHHhhcCccee
Q 006826 91 KGCIRVFCRVRSFLVTGRR-VIHEPVLTE--LEKVVVRSGGSKKEFGFDKVFNQAASQEDVFVEV-EPILRSALDGHNVC 166 (630)
Q Consensus 91 kG~IrV~~RvRP~~~~e~~-~~~~~v~~~--~~~v~v~~~~~~~~F~FD~VF~~~atQ~eVf~~v-~plV~svl~GyN~~ 166 (630)
-++|+|+||+||.+..+.. +...+..+. .+++.+......+.|.||+||.|+++|++||..+ .|+|++||.|||+|
T Consensus 6 ~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~~~~v~~~~~~~~~~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL~GYNGT 85 (607)
T KOG0240|consen 6 ECSIKVVCRFRPLNGLENNLGSKFIDCFENGENTVVLETTKETKTYVFDRVFSPNATQEDVYEFAAKPIVDDVLLGYNGT 85 (607)
T ss_pred CCceEEEEEeecCCchhhhcCCcCccCCCCCcceEEEecccccccceeeeecCCCccHHHHHHHHHHHHHHHHhccccee
Confidence 4899999999999986543 333333443 3556666555558999999999999999999986 99999999999999
Q ss_pred EEecccCCCCcceeecCCCC---CCCchhHHHHHHHHHHhcCC-CceEEEEEeEEEEecceeeecCCCCCccchhhhhcc
Q 006826 167 VLAYGQTGTGKTFTMDGTSD---QPGIVPRALEELFRQAALDN-SSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAATR 242 (630)
Q Consensus 167 IfaYGqTGSGKTyTM~G~~~---~~GIIpRal~~LF~~~~~~~-~~~~~v~vS~lEIYnE~I~DLL~~~~~~~~~~~~~~ 242 (630)
|||||||||||||||.|... ..|||||++++||..+.... ..+|.|.|||||||+|+|+|||++...
T Consensus 86 vfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~~~k~--------- 156 (607)
T KOG0240|consen 86 VFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLLDPEKT--------- 156 (607)
T ss_pred EEEecCCCCCcceeecccCCChhhcCcHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHhCcccC---------
Confidence 99999999999999999765 56999999999999987554 679999999999999999999997654
Q ss_pred cCeeEEeCCCCCEEEcCcEEEEcCChHHHHHHHHhhhhcccccccCCCCCCCCcEEEEEEEEEEecCCCCCceEEeEeEE
Q 006826 243 CNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDALEAKTEVSKLWM 322 (630)
Q Consensus 243 ~~L~i~ed~~g~v~v~glt~v~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~I~v~~~~~~~~~~~~~skL~l 322 (630)
++.+++|.+.+++|+|++++.|.++++++.+++.|..+|+++.|+||.+|||||+||+|+|.+.+... .....|+|+|
T Consensus 157 -nlsvheDK~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e~-~~~~~gkLyL 234 (607)
T KOG0240|consen 157 -NLSVHEDKNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVED-KRKLSGKLYL 234 (607)
T ss_pred -CceeecccCCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEeccccc-hhhccccEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999988766 7788899999
Q ss_pred EecCCCccccccCCCcchhhhhhhhhHhHHHHHHHHHHHHhC-CCCccCCCCchhhhhhcccCCCceeeeEEecCCCCCc
Q 006826 323 VDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRK-RGHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEED 401 (630)
Q Consensus 323 VDLAGSEr~~kt~a~g~rl~E~~~INkSLsaLg~VI~aL~~~-~~hiPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~ 401 (630)
|||||||+++|+|+.|..+.|+++||+||+|||+||+||+.+ ..|||||||||||||||||||||+|.+|+|+||+..+
T Consensus 235 VDLaGSEkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g~~shipYRDSKLTRILqdSLGGNsRTtlIi~csPss~n 314 (607)
T KOG0240|consen 235 VDLAGSEKVSKTGAEGAVLEEAKNINKSLSALGNVINALAEGPKSHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSLN 314 (607)
T ss_pred EEcccccccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhCCCcceEEEEecCCcccc
Confidence 999999999999999999999999999999999999999998 7899999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHHHhhcccccccccHHH
Q 006826 402 VGETICSLSFAKRARGIESNRELSEDL 428 (630)
Q Consensus 402 ~~ETlsTLrFA~rar~I~~~~~~~~~~ 428 (630)
..||.+||+|++||+.|+|.+.+|.+.
T Consensus 315 ~~ET~STl~fg~rak~ikN~v~~n~e~ 341 (607)
T KOG0240|consen 315 EAETKSTLRFGNRAKTIKNTVWVNLEL 341 (607)
T ss_pred ccccccchhhccccccccchhhhhhHh
Confidence 999999999999999999998888654
No 7
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=7.9e-83 Score=679.11 Aligned_cols=316 Identities=35% Similarity=0.563 Sum_probs=288.0
Q ss_pred CEEEEEEeCCCCcccCC-CccccEEecCCEEEEEeC--------------CceEEEEeceeeCCCCChhhHHHhh-HHHH
Q 006826 93 CIRVFCRVRSFLVTGRR-VIHEPVLTELEKVVVRSG--------------GSKKEFGFDKVFNQAASQEDVFVEV-EPIL 156 (630)
Q Consensus 93 ~IrV~~RvRP~~~~e~~-~~~~~v~~~~~~v~v~~~--------------~~~~~F~FD~VF~~~atQ~eVf~~v-~plV 156 (630)
+|+|||||||+...|.. +...++.+.++.+.+... ...+.|.||+||+++++|++||+.+ .|+|
T Consensus 1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vf~~~~~plv 80 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEGTRRVVKVVDDRMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETSTQEEVYENTTKPLV 80 (338)
T ss_pred CeEEEEEcCCCChhhhhcCCceEEEEcCCCEEEEcCCcccccccchhcccCCceEEEeccccCCCCCHHHHHHHHHHHHH
Confidence 69999999999986633 344555554444333321 2348999999999999999999987 8999
Q ss_pred HHhhcCcceeEEecccCCCCcceeecCCCCCCCchhHHHHHHHHHHhcCC-CceEEEEEeEEEEecceeeecCCCCCccc
Q 006826 157 RSALDGHNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQAALDN-SSSVTFSMSMLEVYMGSVRDLLAPKPVFK 235 (630)
Q Consensus 157 ~svl~GyN~~IfaYGqTGSGKTyTM~G~~~~~GIIpRal~~LF~~~~~~~-~~~~~v~vS~lEIYnE~I~DLL~~~~~~~ 235 (630)
+++++|||+||||||||||||||||+|+.+++|||||++++||+.+.... .+.|.|++||+|||||+|+|||++...
T Consensus 81 ~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~-- 158 (338)
T cd01370 81 DGVLNGYNATVFAYGATGAGKTHTMLGTDSDPGLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDLLSPSSG-- 158 (338)
T ss_pred HHHHCCCCceEEeeCCCCCCCeEEEcCCCCCCchHHHHHHHHHHhhhhcccCceEEEEEEEEEEECCEEEECCCCCCC--
Confidence 99999999999999999999999999999999999999999999887665 789999999999999999999987532
Q ss_pred hhhhhcccCeeEEeCCCCCEEEcCcEEEEcCChHHHHHHHHhhhhcccccccCCCCCCCCcEEEEEEEEEEecCCC--CC
Q 006826 236 AYEAATRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDAL--EA 313 (630)
Q Consensus 236 ~~~~~~~~~L~i~ed~~g~v~v~glt~v~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~I~v~~~~~~~--~~ 313 (630)
.+.++++++++++|.|++++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|+|.+.+... ..
T Consensus 159 --------~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~~ 230 (338)
T cd01370 159 --------PLELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTASINQ 230 (338)
T ss_pred --------CceEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEEEEecCCCCCC
Confidence 68999999999999999999999999999999999999999999999999999999999998876542 35
Q ss_pred ceEEeEeEEEecCCCccccccCCCcchhhhhhhhhHhHHHHHHHHHHHHhCC---CCccCCCCchhhhhhcccCCCceee
Q 006826 314 KTEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKR---GHVPYRNSKLTQILRDSLGDGSKVL 390 (630)
Q Consensus 314 ~~~~skL~lVDLAGSEr~~kt~a~g~rl~E~~~INkSLsaLg~VI~aL~~~~---~hiPYRdSKLT~LLqdsLgGnskT~ 390 (630)
....|+|+|||||||||..++++.|.+++|+.+||+||++|++||.+|+.+. .||||||||||+||+|+|||||+|+
T Consensus 231 ~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~~~~~ipyR~SkLT~lL~d~Lggn~~t~ 310 (338)
T cd01370 231 QVRIGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKKKNKHIPYRDSKLTRLLKDSLGGNCKTV 310 (338)
T ss_pred cEEEEEEEEEECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhccCCCCcCCCcCCHHHHHHHHhcCCCCeEE
Confidence 6778999999999999999999999999999999999999999999999887 8999999999999999999999999
Q ss_pred eEEecCCCCCcHHHhHHHHHHHHHhhcc
Q 006826 391 MLVHASPCEEDVGETICSLSFAKRARGI 418 (630)
Q Consensus 391 mI~~VSP~~~~~~ETlsTLrFA~rar~I 418 (630)
||+||||+..+++||++||+||+||++|
T Consensus 311 ~I~~vsp~~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 311 MIANISPSSSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred EEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999987
No 8
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=1.4e-82 Score=676.87 Aligned_cols=316 Identities=38% Similarity=0.536 Sum_probs=282.3
Q ss_pred CCEEEEEEeCCCCcccCCC-ccccEEec-CCEEEEEeCCceEEEEeceeeCCCCChhhHHHhh-HHHHHHhhcCcceeEE
Q 006826 92 GCIRVFCRVRSFLVTGRRV-IHEPVLTE-LEKVVVRSGGSKKEFGFDKVFNQAASQEDVFVEV-EPILRSALDGHNVCVL 168 (630)
Q Consensus 92 G~IrV~~RvRP~~~~e~~~-~~~~v~~~-~~~v~v~~~~~~~~F~FD~VF~~~atQ~eVf~~v-~plV~svl~GyN~~If 168 (630)
.+|||+|||||+...|... ...++... ++.+.+... ..+.|.||+||+++++|++||+.+ .|+|+++++|||+|||
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~~~~~~~-~~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G~n~ti~ 79 (337)
T cd01373 1 PAVKVVVRIRPPNEIEADGGQGQCLKKLSSDTLVWHSH-PPRMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGYNGSIF 79 (337)
T ss_pred CCeEEEEEcCcCChhhcccCCCeEEEEcCCCcEEeeCC-CCcEEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCCCceeEE
Confidence 4899999999999866432 33344443 455554433 368999999999999999999987 9999999999999999
Q ss_pred ecccCCCCcceeecCCCC--------CCCchhHHHHHHHHHHhcC-----CCceEEEEEeEEEEecceeeecCCCCCccc
Q 006826 169 AYGQTGTGKTFTMDGTSD--------QPGIVPRALEELFRQAALD-----NSSSVTFSMSMLEVYMGSVRDLLAPKPVFK 235 (630)
Q Consensus 169 aYGqTGSGKTyTM~G~~~--------~~GIIpRal~~LF~~~~~~-----~~~~~~v~vS~lEIYnE~I~DLL~~~~~~~ 235 (630)
|||||||||||||+|+.. ++|||||++++||..+... ....|.|++||+|||||+|+|||++...
T Consensus 80 aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~~~~-- 157 (337)
T cd01373 80 AYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDPTSR-- 157 (337)
T ss_pred EeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCCCCC--
Confidence 999999999999999753 6899999999999976533 3568999999999999999999987543
Q ss_pred hhhhhcccCeeEEeCCCCCEEEcCcEEEEcCChHHHHHHHHhhhhcccccccCCCCCCCCcEEEEEEEEEEecCCCC-Cc
Q 006826 236 AYEAATRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDALE-AK 314 (630)
Q Consensus 236 ~~~~~~~~~L~i~ed~~g~v~v~glt~v~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~I~v~~~~~~~~-~~ 314 (630)
.+.+++++.++++|.|++++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|........ ..
T Consensus 158 --------~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~ 229 (337)
T cd01373 158 --------NLKIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKASSTN 229 (337)
T ss_pred --------CceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecCCCCCc
Confidence 589999999999999999999999999999999999999999999999999999999999987654332 24
Q ss_pred eEEeEeEEEecCCCccccccCCCcchhhhhhhhhHhHHHHHHHHHHHHh----CCCCccCCCCchhhhhhcccCCCceee
Q 006826 315 TEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRR----KRGHVPYRNSKLTQILRDSLGDGSKVL 390 (630)
Q Consensus 315 ~~~skL~lVDLAGSEr~~kt~a~g~rl~E~~~INkSLsaLg~VI~aL~~----~~~hiPYRdSKLT~LLqdsLgGnskT~ 390 (630)
...|+|+|||||||||..++++.|.+++|+.+||+||++|++||.+|+. +..||||||||||+||+|+|||||+|+
T Consensus 230 ~~~s~l~~VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT~lL~dsLggns~t~ 309 (337)
T cd01373 230 IRTSRLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAKTT 309 (337)
T ss_pred EEEEEEEEEECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccCCCCccCCcccHHHHHHHHhcCCCceEE
Confidence 5679999999999999999999999999999999999999999999974 468999999999999999999999999
Q ss_pred eEEecCCCCCcHHHhHHHHHHHHHhhcc
Q 006826 391 MLVHASPCEEDVGETICSLSFAKRARGI 418 (630)
Q Consensus 391 mI~~VSP~~~~~~ETlsTLrFA~rar~I 418 (630)
||+||||+..+++||++||+||+||+.|
T Consensus 310 ~I~~vsP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 310 IIANVSPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred EEEEECCCcccHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999987
No 9
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.2e-81 Score=715.08 Aligned_cols=342 Identities=37% Similarity=0.574 Sum_probs=300.2
Q ss_pred CCEEEEEEeCCCCcccCC-CccccEE-ecCCEEEEEeCCc------eEEEEeceeeCCCCChhhHHHh-hHHHHHHhhcC
Q 006826 92 GCIRVFCRVRSFLVTGRR-VIHEPVL-TELEKVVVRSGGS------KKEFGFDKVFNQAASQEDVFVE-VEPILRSALDG 162 (630)
Q Consensus 92 G~IrV~~RvRP~~~~e~~-~~~~~v~-~~~~~v~v~~~~~------~~~F~FD~VF~~~atQ~eVf~~-v~plV~svl~G 162 (630)
.+|.|++||||+.+.+.. +..+.+. ..+..+....... ...|.||+||+++++|++||+. ++|+|.+|+.|
T Consensus 6 ~~i~V~vrvRP~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~l~G 85 (675)
T KOG0242|consen 6 EKILVSVRVRPLNEREDARGDRSDWHCINDTTLFKRVTKSLPEKSKPEKYEFDRVFGEESTQEDVYERTTKPLLLSVLEG 85 (675)
T ss_pred ceeEEEEEeCCCCccccccCCccceEecCCceeEeeccccccccccccceeeeeecCCCCCHHHHHHhccHHHHHHHhcC
Confidence 589999999999986322 2222233 3333333221111 3789999999999999999987 59999999999
Q ss_pred cceeEEecccCCCCcceeecCCCCCCCchhHHHHHHHHHHhcCCCceEEEEEeEEEEecceeeecCCCCCccchhhhhcc
Q 006826 163 HNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQAALDNSSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAATR 242 (630)
Q Consensus 163 yN~~IfaYGqTGSGKTyTM~G~~~~~GIIpRal~~LF~~~~~~~~~~~~v~vS~lEIYnE~I~DLL~~~~~~~~~~~~~~ 242 (630)
||++|||||||||||||||.|..++|||||+++.+||+.+....++.|.|.|||+|||||.|+|||+++..
T Consensus 86 ~N~TVFAYG~TgSGKTyTM~G~~~~PGii~la~~dif~~I~~~~~r~f~v~vSYlEIYNE~I~DLL~~~~~--------- 156 (675)
T KOG0242|consen 86 FNATVFAYGQTGSGKTYTMSGSEDDPGIIPLAMKDIFEKIDKSGEREFSVRVSYLEIYNERIRDLLNPDGG--------- 156 (675)
T ss_pred cccceeeecCCCCCCceEEeccCCCCCeeehHHHHHHHHHHhcCCceeEEEEEEEEEeccccccccCCCCC---------
Confidence 99999999999999999999999999999999999999998888999999999999999999999998865
Q ss_pred cCeeEEeCCCCCEEEcCcEEEEcCChHHHHHHHHhhhhcccccccCCCCCCCCcEEEEEEEEEEecCCCCCceEEeEeEE
Q 006826 243 CNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDALEAKTEVSKLWM 322 (630)
Q Consensus 243 ~~L~i~ed~~g~v~v~glt~v~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~I~v~~~~~~~~~~~~~skL~l 322 (630)
.|.|++|+.++++|.||++..|.|.++++.||..|..+|+++.|++|..|||||+||+|.|........ . ..|+|+|
T Consensus 157 -~L~irED~~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~-~-~~s~L~l 233 (675)
T KOG0242|consen 157 -DLRLREDSEGGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREAS-S-RVSKLNL 233 (675)
T ss_pred -CceEeEcCCCCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEecccccc-c-hhheehh
Confidence 589999999999999999999999999999999999999999999999999999999999998765543 2 6789999
Q ss_pred EecCCCccccccCCCcchhhhhhhhhHhHHHHHHHHHHHHhC--CCCccCCCCchhhhhhcccCCCceeeeEEecCCCCC
Q 006826 323 VDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRK--RGHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEE 400 (630)
Q Consensus 323 VDLAGSEr~~kt~a~g~rl~E~~~INkSLsaLg~VI~aL~~~--~~hiPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~ 400 (630)
||||||||+.++++.|.|++||.+||+||++||+||.+|..+ ..||||||||||||||++||||++|+|||||+|+..
T Consensus 234 IDLAGSERas~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~~~hipYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~ 313 (675)
T KOG0242|consen 234 IDLAGSERASRTGNEGVRLKEGAHINRSLLALGTVINKLSEGKRPRHIPYRDSKLTRLLQDSLGGNARTAIIATISPSSS 313 (675)
T ss_pred hhhhhhhhhhhhhccceeccccchhhHHHHHHHHHHHHHccccccCCCCccccHHHHhchhhcCCCccEEEEEEeCchhh
Confidence 999999999999999999999999999999999999999876 469999999999999999999999999999999999
Q ss_pred cHHHhHHHHHHHHHhhcccccccccHHHH-----HHHHHHHHHHHHHHHH
Q 006826 401 DVGETICSLSFAKRARGIESNRELSEDLK-----KRREIRMAELEEDMRE 445 (630)
Q Consensus 401 ~~~ETlsTLrFA~rar~I~~~~~~~~~~~-----~~~~~~i~~L~~el~~ 445 (630)
+++||.+||+||+||++|++.+.+|.... +..+..+..|+.++..
T Consensus 314 ~~~eT~nTL~fAsrak~i~~~~~~n~~~~~~~~~~~~~~~i~~l~~e~~~ 363 (675)
T KOG0242|consen 314 HYEETKNTLKFASRAKEITTKAQVNVILSDKALLKYLQREIAELEAELER 363 (675)
T ss_pred HHHHHHHHHHHHHHhhhcccccccceecchhhhhHHHHHHHHHHHHHHHh
Confidence 99999999999999999999888774321 1123445555555544
No 10
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=1.7e-80 Score=662.81 Aligned_cols=315 Identities=31% Similarity=0.525 Sum_probs=283.1
Q ss_pred CEEEEEEeCCCCcccCCC-ccccEE-ecCCEEEEEeCC-------------ceEEEEeceeeCCCCChhhHHHhh-HHHH
Q 006826 93 CIRVFCRVRSFLVTGRRV-IHEPVL-TELEKVVVRSGG-------------SKKEFGFDKVFNQAASQEDVFVEV-EPIL 156 (630)
Q Consensus 93 ~IrV~~RvRP~~~~e~~~-~~~~v~-~~~~~v~v~~~~-------------~~~~F~FD~VF~~~atQ~eVf~~v-~plV 156 (630)
+|+|||||||+...|... ...++. .+++.+.+.... ..+.|.||+||+++++|++||+.+ .|+|
T Consensus 2 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~tq~~vy~~~~~p~v 81 (345)
T cd01368 2 PVKVYLRVRPLSKDELESEDEGCIEVINSTTIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTTQKEFFEGTALPLV 81 (345)
T ss_pred CEEEEEEeCcCCchhhccCCCceEEEcCCCEEEEeCCccccccccccccCCCceEeecCeEECCCCCHHHHHHHHHHHHH
Confidence 799999999999876432 333343 445667665322 347999999999999999999986 9999
Q ss_pred HHhhcCcceeEEecccCCCCcceeecCCCCCCCchhHHHHHHHHHHhcCCCceEEEEEeEEEEecceeeecCCCCCccch
Q 006826 157 RSALDGHNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQAALDNSSSVTFSMSMLEVYMGSVRDLLAPKPVFKA 236 (630)
Q Consensus 157 ~svl~GyN~~IfaYGqTGSGKTyTM~G~~~~~GIIpRal~~LF~~~~~~~~~~~~v~vS~lEIYnE~I~DLL~~~~~~~~ 236 (630)
+++++|||+||||||||||||||||+|+++++|||||++++||+.+.. |.|.+||+|||||+|+|||++....
T Consensus 82 ~~~l~G~n~ti~aYGqtGSGKTyTm~G~~~~~Gli~r~~~~lF~~~~~-----~~v~~S~~EIyne~v~DLL~~~~~~-- 154 (345)
T cd01368 82 QDLLKGKNSLLFTYGVTNSGKTYTMQGSPGDGGILPRSLDVIFNSIGG-----YSVFVSYVEIYNNYIYDLLEDSPSS-- 154 (345)
T ss_pred HHHhCCCceEEEEeCCCCCCCeEEecCCCCCCchHHHHHHHHHHHHHh-----eeEEEEEEEEeCCEeEeCCCCcccc--
Confidence 999999999999999999999999999999999999999999998764 9999999999999999999886541
Q ss_pred hhhhcccCeeEEeCCCCCEEEcCcEEEEcCChHHHHHHHHhhhhcccccccCCCCCCCCcEEEEEEEEEEecCCC-----
Q 006826 237 YEAATRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDAL----- 311 (630)
Q Consensus 237 ~~~~~~~~L~i~ed~~g~v~v~glt~v~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~I~v~~~~~~~----- 311 (630)
......+.|++|++++++|.|++++.|.+++|+..+|..|.++|++++|.+|.+|||||+||+|+|.+.....
T Consensus 155 --~~~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~~~~ 232 (345)
T cd01368 155 --TKKRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGDVD 232 (345)
T ss_pred --ccCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEEEEeccCcccccc
Confidence 1223468999999999999999999999999999999999999999999999999999999999998765432
Q ss_pred --CCceEEeEeEEEecCCCccccccCCCcchhhhhhhhhHhHHHHHHHHHHHHh------CCCCccCCCCchhhhhhccc
Q 006826 312 --EAKTEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRR------KRGHVPYRNSKLTQILRDSL 383 (630)
Q Consensus 312 --~~~~~~skL~lVDLAGSEr~~kt~a~g~rl~E~~~INkSLsaLg~VI~aL~~------~~~hiPYRdSKLT~LLqdsL 383 (630)
......|+|+|||||||||..++++.|.+++|+.+||+||++|++||.+|++ +..||||||||||+||+|+|
T Consensus 233 ~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL~~~l 312 (345)
T cd01368 233 QDKDQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLFQNYF 312 (345)
T ss_pred cCCCceEEEEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHHHHHHHHhc
Confidence 2456789999999999999999999999999999999999999999999986 56899999999999999999
Q ss_pred CCCceeeeEEecCCCCCcHHHhHHHHHHHHHhh
Q 006826 384 GDGSKVLMLVHASPCEEDVGETICSLSFAKRAR 416 (630)
Q Consensus 384 gGnskT~mI~~VSP~~~~~~ETlsTLrFA~rar 416 (630)
||||+|+||+||||+..+++||++||+||.+|+
T Consensus 313 ~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 313 DGEGKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred CCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999985
No 11
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.8e-81 Score=691.63 Aligned_cols=332 Identities=37% Similarity=0.575 Sum_probs=300.8
Q ss_pred CCEEEEEEeCCCCcccCC-CccccEEecCCEEEEEeC---------CceEEEEeceeeCCC-------CChhhHHHhh-H
Q 006826 92 GCIRVFCRVRSFLVTGRR-VIHEPVLTELEKVVVRSG---------GSKKEFGFDKVFNQA-------ASQEDVFVEV-E 153 (630)
Q Consensus 92 G~IrV~~RvRP~~~~e~~-~~~~~v~~~~~~v~v~~~---------~~~~~F~FD~VF~~~-------atQ~eVf~~v-~ 153 (630)
.+|||.+||||++..|-. ...+++.++.+..++... ++.++|.||++|++. +.|+.||+.+ .
T Consensus 4 ~kVkVaVRVRP~nrREl~l~tk~vv~vd~~q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~lG~ 83 (1714)
T KOG0241|consen 4 AKVKVAVRVRPMNRRELELSTKCVVEVDKNQTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKCLGE 83 (1714)
T ss_pred cceEEEEEecccchhhhcccccceEEeccCceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHhcch
Confidence 589999999999986643 456777888777776532 456999999999864 6899999999 8
Q ss_pred HHHHHhhcCcceeEEecccCCCCcceeecCCCCCCCchhHHHHHHHHHHhcC--CCceEEEEEeEEEEecceeeecCCCC
Q 006826 154 PILRSALDGHNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQAALD--NSSSVTFSMSMLEVYMGSVRDLLAPK 231 (630)
Q Consensus 154 plV~svl~GyN~~IfaYGqTGSGKTyTM~G~~~~~GIIpRal~~LF~~~~~~--~~~~~~v~vS~lEIYnE~I~DLL~~~ 231 (630)
-+|+++|+|||+||||||||||||||||+|..++||||||.+..||..+... ....|+|.|||+|||||+++|||+|+
T Consensus 84 ~il~naf~GyNaCifaYGQtGsGKsYsmmGt~~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~DLLdPk 163 (1714)
T KOG0241|consen 84 GILENAFQGYNACIFAYGQTGSGKSYSMMGTAEQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRDLLDPK 163 (1714)
T ss_pred HHHHHHhhccceeeEEecccCCCceeEeeccCCCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhhhhCCC
Confidence 8999999999999999999999999999999999999999999999987654 37789999999999999999999998
Q ss_pred CccchhhhhcccCeeEEeCCCCCEEEcCcEEEEcCChHHHHHHHHhhhhcccccccCCCCCCCCcEEEEEEEEEEecCCC
Q 006826 232 PVFKAYEAATRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDAL 311 (630)
Q Consensus 232 ~~~~~~~~~~~~~L~i~ed~~g~v~v~glt~v~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~I~v~~~~~~~ 311 (630)
.. ...|+++++.--|+||.||++..|.|++|+..++..|+++|++++|+||..|||||+||.|.|.+.-.+.
T Consensus 164 ~s--------sqtlkVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~ 235 (1714)
T KOG0241|consen 164 GS--------SQTLKVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDL 235 (1714)
T ss_pred CC--------cceeEEeecccccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccceeEEEEEeeEEecc
Confidence 75 2468999999999999999999999999999999999999999999999999999999999998753221
Q ss_pred C---CceEEeEeEEEecCCCccccccCCCcchhhhhhhhhHhHHHHHHHHHHHHhC------CCCccCCCCchhhhhhcc
Q 006826 312 E---AKTEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRK------RGHVPYRNSKLTQILRDS 382 (630)
Q Consensus 312 ~---~~~~~skL~lVDLAGSEr~~kt~a~g~rl~E~~~INkSLsaLg~VI~aL~~~------~~hiPYRdSKLT~LLqds 382 (630)
. .....|+|.|||||||||+.++|+.|.+++|+.+||+||++||.||+||+.+ .++||||||.|||||+|+
T Consensus 236 ktg~SgeKvsklslVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDSVLTwLLkD~ 315 (1714)
T KOG0241|consen 236 KTGHSGEKVSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDSVLTWLLKDN 315 (1714)
T ss_pred ccCcchhheeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhHHHHHHHHhh
Confidence 1 3456799999999999999999999999999999999999999999999753 469999999999999999
Q ss_pred cCCCceeeeEEecCCCCCcHHHhHHHHHHHHHhhcccccccccHHHHHH
Q 006826 383 LGDGSKVLMLVHASPCEEDVGETICSLSFAKRARGIESNRELSEDLKKR 431 (630)
Q Consensus 383 LgGnskT~mI~~VSP~~~~~~ETlsTLrFA~rar~I~~~~~~~~~~~~~ 431 (630)
|||||+|+||+||||+.++|+||++|||||.|||.|+|++.+|+++...
T Consensus 316 LGGNsrTvMiatvSPaAdnyeeTlStLRYadrAkrIvN~avvNedpnar 364 (1714)
T KOG0241|consen 316 LGGNSRTVMIATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNAR 364 (1714)
T ss_pred cCCCceeEEEEEecccccchHHHHHHHHHHHHHHHhhccccccCCchHH
Confidence 9999999999999999999999999999999999999999999877543
No 12
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=9.3e-80 Score=659.73 Aligned_cols=327 Identities=36% Similarity=0.551 Sum_probs=298.4
Q ss_pred CCEEEEEEeCCCCcccCC-CccccEEecCCEEEEEeCC-------ceEEEEeceeeCCC-------CChhhHHHhh-HHH
Q 006826 92 GCIRVFCRVRSFLVTGRR-VIHEPVLTELEKVVVRSGG-------SKKEFGFDKVFNQA-------ASQEDVFVEV-EPI 155 (630)
Q Consensus 92 G~IrV~~RvRP~~~~e~~-~~~~~v~~~~~~v~v~~~~-------~~~~F~FD~VF~~~-------atQ~eVf~~v-~pl 155 (630)
++|+|+|||||+...|.. +...++.++++.+.+.... ..+.|.||+||++. ++|++||+++ .|+
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~p~ 80 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGSKCIVQMPGKVTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGREL 80 (356)
T ss_pred CCEEEEEEeCcCChhhhccCCceEEEECCCEEEEEcCCcccccccCceEEECCeEecccCCCCCCCCCHHHHHHHHHHHH
Confidence 689999999999986543 4556777888888887653 35899999999999 9999999987 999
Q ss_pred HHHhhcCcceeEEecccCCCCcceeecCCCCCCCchhHHHHHHHHHHhcCC--CceEEEEEeEEEEecceeeecCCCCCc
Q 006826 156 LRSALDGHNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQAALDN--SSSVTFSMSMLEVYMGSVRDLLAPKPV 233 (630)
Q Consensus 156 V~svl~GyN~~IfaYGqTGSGKTyTM~G~~~~~GIIpRal~~LF~~~~~~~--~~~~~v~vS~lEIYnE~I~DLL~~~~~ 233 (630)
|+++++|||+||||||||||||||||+|+..++|||||++++||+.+.... ...|.|++||+|||||+|+|||++...
T Consensus 81 v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~ 160 (356)
T cd01365 81 LDHAFEGYNVCLFAYGQTGSGKSYTMMGYKEEKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLNPKKK 160 (356)
T ss_pred HHHHhCCCceEEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeCCCCCcc
Confidence 999999999999999999999999999999999999999999999876544 578999999999999999999997752
Q ss_pred cchhhhhcccCeeEEeCCCCCEEEcCcEEEEcCChHHHHHHHHhhhhcccccccCCCCCCCCcEEEEEEEEEEecCC---
Q 006826 234 FKAYEAATRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDA--- 310 (630)
Q Consensus 234 ~~~~~~~~~~~L~i~ed~~g~v~v~glt~v~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~I~v~~~~~~--- 310 (630)
....+.+++++.++++|.|++++.|.+++|+..++..|.++|.+++|.+|..|||||+||+|+|.+....
T Consensus 161 -------~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~~ 233 (356)
T cd01365 161 -------NKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKET 233 (356)
T ss_pred -------CCcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccCC
Confidence 2236899999999999999999999999999999999999999999999999999999999999876543
Q ss_pred CCCceEEeEeEEEecCCCccccccCCCcchhhhhhhhhHhHHHHHHHHHHHHhC--------CCCccCCCCchhhhhhcc
Q 006826 311 LEAKTEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRK--------RGHVPYRNSKLTQILRDS 382 (630)
Q Consensus 311 ~~~~~~~skL~lVDLAGSEr~~kt~a~g~rl~E~~~INkSLsaLg~VI~aL~~~--------~~hiPYRdSKLT~LLqds 382 (630)
.......|+|+|||||||||..+++..|.+++|+..||+||++|++||.+|+.+ ..||||||||||+||+|+
T Consensus 234 ~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~lL~~~ 313 (356)
T cd01365 234 DLTTEKVSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKEN 313 (356)
T ss_pred CCCceEEEEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHHHHHHHHh
Confidence 235667899999999999999999999999999999999999999999999863 489999999999999999
Q ss_pred cCCCceeeeEEecCCCCCcHHHhHHHHHHHHHhhccccccccc
Q 006826 383 LGDGSKVLMLVHASPCEEDVGETICSLSFAKRARGIESNRELS 425 (630)
Q Consensus 383 LgGnskT~mI~~VSP~~~~~~ETlsTLrFA~rar~I~~~~~~~ 425 (630)
||||++|+||+||||...+++||++||+||+++++|++.|.+|
T Consensus 314 lgg~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~~~ 356 (356)
T cd01365 314 LGGNSKTAMIATISPADINYEETLSTLRYADRAKKIVNVAVVN 356 (356)
T ss_pred cCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccC
Confidence 9999999999999999999999999999999999999998764
No 13
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=5.6e-79 Score=645.57 Aligned_cols=309 Identities=36% Similarity=0.515 Sum_probs=282.2
Q ss_pred CCEEEEEEeCCCCcccCC-CccccEEecCC-EEEEEeCC---------ceEEEEeceeeCCCCChhhHHHhh-HHHHHHh
Q 006826 92 GCIRVFCRVRSFLVTGRR-VIHEPVLTELE-KVVVRSGG---------SKKEFGFDKVFNQAASQEDVFVEV-EPILRSA 159 (630)
Q Consensus 92 G~IrV~~RvRP~~~~e~~-~~~~~v~~~~~-~v~v~~~~---------~~~~F~FD~VF~~~atQ~eVf~~v-~plV~sv 159 (630)
.+|+|||||||+.+.|.. +...++.++++ .+.+.... ..+.|.||+||+++++|++||+.+ .|+|+++
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~plv~~~ 80 (322)
T cd01367 1 MKITVAVRKRPLNDKELSKGETDVVSCESNPTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVTNEEVYRSTVKPLIPHV 80 (322)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEECCCCEEEEecCccccccccccCCceEecceEECCCCCHHHHHHHHHHHHHHHH
Confidence 489999999999987643 33455555554 66665321 247899999999999999999986 9999999
Q ss_pred hcCcceeEEecccCCCCcceeecCCCCCCCchhHHHHHHHHHHhcCCCceEEEEEeEEEEecceeeecCCCCCccchhhh
Q 006826 160 LDGHNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQAALDNSSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEA 239 (630)
Q Consensus 160 l~GyN~~IfaYGqTGSGKTyTM~G~~~~~GIIpRal~~LF~~~~~~~~~~~~v~vS~lEIYnE~I~DLL~~~~~~~~~~~ 239 (630)
++|||+||||||||||||||||+|+.+++|||||++++||+.+.... ..|.|++||+|||||+|+|||++..
T Consensus 81 ~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Glipr~~~~lf~~~~~~~-~~~~v~~S~~EIy~e~v~DLL~~~~------- 152 (322)
T cd01367 81 FEGGVATCFAYGQTGSGKTYTMLGDENQEGLYALAARDIFRLLAQPN-DDLGVTVSFFEIYGGKLFDLLNDRK------- 152 (322)
T ss_pred hCCCceEEEeccCCCCCCceEecCcCCcCccHHHHHHHHHHHHhccc-cccEEEEEEEeeecCchhhhccCcc-------
Confidence 99999999999999999999999999999999999999999887654 7899999999999999999998732
Q ss_pred hcccCeeEEeCCCCCEEEcCcEEEEcCChHHHHHHHHhhhhcccccccCCCCCCCCcEEEEEEEEEEecCCCCCceEEeE
Q 006826 240 ATRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDALEAKTEVSK 319 (630)
Q Consensus 240 ~~~~~L~i~ed~~g~v~v~glt~v~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~I~v~~~~~~~~~~~~~sk 319 (630)
.+.+++++.++++|.|++++.|.+++|++.++..|.++|++++|.+|..|||||+||+|+|..... ....|+
T Consensus 153 ----~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~----~~~~s~ 224 (322)
T cd01367 153 ----RLSVLEDGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL----NKLLGK 224 (322)
T ss_pred ----ceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecC----CeeEEE
Confidence 589999999999999999999999999999999999999999999999999999999999987653 456799
Q ss_pred eEEEecCCCccccccC-CCcchhhhhhhhhHhHHHHHHHHHHHHhCCCCccCCCCchhhhhhcccCCCceeeeEEecCCC
Q 006826 320 LWMVDLGGSERVLKTG-ATGQTLDEGRAINLSLSALADVIAALRRKRGHVPYRNSKLTQILRDSLGDGSKVLMLVHASPC 398 (630)
Q Consensus 320 L~lVDLAGSEr~~kt~-a~g~rl~E~~~INkSLsaLg~VI~aL~~~~~hiPYRdSKLT~LLqdsLgGnskT~mI~~VSP~ 398 (630)
|+||||||||+...++ ..+++++|+.+||+||++|++||.+|+.+..||||||||||+||+|+|||||+|+||+||||+
T Consensus 225 l~~vDLAGsE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~~~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~ 304 (322)
T cd01367 225 LSFIDLAGSERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNKAHVPFRGSKLTQVLRDSFIGNSKTVMIATISPS 304 (322)
T ss_pred EEEeecCCccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhhCCCCeEEEEEEeCCc
Confidence 9999999999998876 578999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHhHHHHHHHHHhh
Q 006826 399 EEDVGETICSLSFAKRAR 416 (630)
Q Consensus 399 ~~~~~ETlsTLrFA~rar 416 (630)
..+++||++||+||+|+|
T Consensus 305 ~~~~~eTl~tL~fa~r~k 322 (322)
T cd01367 305 ASSCEHTLNTLRYADRVK 322 (322)
T ss_pred hhhHHHHHHHHHHHHhhC
Confidence 999999999999999986
No 14
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=2e-78 Score=640.47 Aligned_cols=309 Identities=37% Similarity=0.571 Sum_probs=282.8
Q ss_pred CEEEEEEeCCCCcccCCCccccEEe-cC-----CEEEEEeCC---ceEEEEeceeeCCCCChhhHHHhh-HHHHHHhhcC
Q 006826 93 CIRVFCRVRSFLVTGRRVIHEPVLT-EL-----EKVVVRSGG---SKKEFGFDKVFNQAASQEDVFVEV-EPILRSALDG 162 (630)
Q Consensus 93 ~IrV~~RvRP~~~~e~~~~~~~v~~-~~-----~~v~v~~~~---~~~~F~FD~VF~~~atQ~eVf~~v-~plV~svl~G 162 (630)
||+|+|||||+...|... ..++.. +. ..+.+.+.. ..+.|.||+||+++++|++||+.+ .|+|+++++|
T Consensus 1 ~i~V~vRvRP~~~~e~~~-~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G 79 (319)
T cd01376 1 NVRVVVRVRPFLDCEEDS-SSCVRGIDSDQGQAKSVEIENPRNRGETKKYQFDAFYGTECTQEDIFSREVKPIVPHLLSG 79 (319)
T ss_pred CcEEEEEeCcCCccccCC-CceEEEeCCCCCcceEEEEeCCCCCCCccEEecCeEECCCCCHHHHHHHHHHHHHHHHhCC
Confidence 699999999998877443 334443 33 356665432 458999999999999999999984 9999999999
Q ss_pred cceeEEecccCCCCcceeecCCCCCCCchhHHHHHHHHHHhcCCCceEEEEEeEEEEecceeeecCCCCCccchhhhhcc
Q 006826 163 HNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQAALDNSSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAATR 242 (630)
Q Consensus 163 yN~~IfaYGqTGSGKTyTM~G~~~~~GIIpRal~~LF~~~~~~~~~~~~v~vS~lEIYnE~I~DLL~~~~~~~~~~~~~~ 242 (630)
||+||||||||||||||||+|+..++|||||++++||+.+... .+.|.|++||+|||||+|+|||++...
T Consensus 80 ~n~~i~ayG~tgSGKTyTm~G~~~~~Glipr~~~~Lf~~~~~~-~~~~~v~~S~~EIy~e~v~DLL~~~~~--------- 149 (319)
T cd01376 80 QNATVFAYGSTGAGKTHTMLGDPNEPGLIPRTLSDLLRMGRKQ-AWTGAFSMSYYEIYNEKVYDLLEPAKK--------- 149 (319)
T ss_pred CceEEEEECCCCCCCcEEEeCCcCccchHHHHHHHHHHHHhhc-cccceEEEEEEEEECCEeeEccCCCCC---------
Confidence 9999999999999999999999999999999999999877544 478999999999999999999987533
Q ss_pred cCeeEEeCCCCCEEEcCcEEEEcCChHHHHHHHHhhhhcccccccCCCCCCCCcEEEEEEEEEEecCCCCCceEEeEeEE
Q 006826 243 CNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDALEAKTEVSKLWM 322 (630)
Q Consensus 243 ~~L~i~ed~~g~v~v~glt~v~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~I~v~~~~~~~~~~~~~skL~l 322 (630)
.+.|++++.|+++|.|++++.|.+++|+..++..|.++|.+++|.+|..|||||+||+|+|.+.+. .....|+|+|
T Consensus 150 -~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~---~~~~~s~l~~ 225 (319)
T cd01376 150 -ELPIREDKDGNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPAS---NIQLEGKLNL 225 (319)
T ss_pred -CceEEEcCCCCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECC---CceEEEEEEE
Confidence 588999999999999999999999999999999999999999999999999999999999988754 3367899999
Q ss_pred EecCCCccccccCCCcchhhhhhhhhHhHHHHHHHHHHHHhCCCCccCCCCchhhhhhcccCCCceeeeEEecCCCCCcH
Q 006826 323 VDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKRGHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDV 402 (630)
Q Consensus 323 VDLAGSEr~~kt~a~g~rl~E~~~INkSLsaLg~VI~aL~~~~~hiPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~ 402 (630)
|||||||+..+++..|.+++|+..||+||++|++||.+|..+..||||||||||+||+|+|||||+|+||+||||...++
T Consensus 226 VDLAGsE~~~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~~~ipyr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~~ 305 (319)
T cd01376 226 IDLAGSEDNRRTGNEGIRLKESAAINSSLFVLSKVVDALNKGLPRIPYRESKLTRLLQDSLGGGSRCIMVANIAPERSFY 305 (319)
T ss_pred EECCCCCcccccCCccchhhhhhhhhhhHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhcCCCccEEEEEEeCCchhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHhh
Q 006826 403 GETICSLSFAKRAR 416 (630)
Q Consensus 403 ~ETlsTLrFA~rar 416 (630)
+||++||+||+|||
T Consensus 306 ~eTl~TL~fa~r~~ 319 (319)
T cd01376 306 QDTLSTLNFASRSK 319 (319)
T ss_pred HHHHHHHHHHHhhC
Confidence 99999999999986
No 15
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=2.7e-78 Score=639.84 Aligned_cols=315 Identities=35% Similarity=0.566 Sum_probs=292.8
Q ss_pred CEEEEEEeCCCCcccCCCccccEEecCC-EEEEEeCCceEEEEeceeeCCCCChhhHHHhh-HHHHHHhhcCcceeEEec
Q 006826 93 CIRVFCRVRSFLVTGRRVIHEPVLTELE-KVVVRSGGSKKEFGFDKVFNQAASQEDVFVEV-EPILRSALDGHNVCVLAY 170 (630)
Q Consensus 93 ~IrV~~RvRP~~~~e~~~~~~~v~~~~~-~v~v~~~~~~~~F~FD~VF~~~atQ~eVf~~v-~plV~svl~GyN~~IfaY 170 (630)
+|+|+|||||+...|.....+++.++++ .+.+..+...+.|.||+||+++++|++||+.+ .|+|+++++|||+|||||
T Consensus 1 ~V~V~vRvRP~~~~e~~~~~~~~~~~~~~~v~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n~~i~ay 80 (321)
T cd01374 1 KIKVSVRVRPLNPRESDNEQVAWSIDNDNTISLEESTPGQSFTFDRVFGGESTNREVYERIAKPVVRSALEGYNGTIFAY 80 (321)
T ss_pred CeEEEEEcCcCCcccccCCcceEEECCCCEEEEcCCCCCeEEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCceeEEee
Confidence 6999999999998776555667777765 66666555679999999999999999999986 999999999999999999
Q ss_pred ccCCCCcceeecCCCCCCCchhHHHHHHHHHHhcCCCceEEEEEeEEEEecceeeecCCCCCccchhhhhcccCeeEEeC
Q 006826 171 GQTGTGKTFTMDGTSDQPGIVPRALEELFRQAALDNSSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAATRCNLNIQTD 250 (630)
Q Consensus 171 GqTGSGKTyTM~G~~~~~GIIpRal~~LF~~~~~~~~~~~~v~vS~lEIYnE~I~DLL~~~~~~~~~~~~~~~~L~i~ed 250 (630)
|||||||||||+|+.+++|||||++++||..+....+..|.|++||+|||||+|+|||++... .++++++
T Consensus 81 G~tgSGKT~T~~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~----------~l~i~~~ 150 (321)
T cd01374 81 GQTSSGKTFTMSGDEQEPGIIPLAVRDIFQRIQDTPDREFLLRVSYLEIYNEKIKDLLSPSPQ----------ELRIRED 150 (321)
T ss_pred cCCCCCCceeccCCCCCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEEcCEeEEccCCCCC----------CceEEEC
Confidence 999999999999999999999999999999987777889999999999999999999998753 6899999
Q ss_pred CCCCEEEcCcEEEEcCChHHHHHHHHhhhhcccccccCCCCCCCCcEEEEEEEEEEecCCC--CCceEEeEeEEEecCCC
Q 006826 251 AKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDAL--EAKTEVSKLWMVDLGGS 328 (630)
Q Consensus 251 ~~g~v~v~glt~v~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~I~v~~~~~~~--~~~~~~skL~lVDLAGS 328 (630)
+.++++|.|++++.|.+++|+..+|..|.++|++++|.+|..|||||+||+|+|.+..... .+....|+|+|||||||
T Consensus 151 ~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~l~~vDLAGs 230 (321)
T cd01374 151 PNKGVVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDSESGTVRVSTLNLIDLAGS 230 (321)
T ss_pred CCCCEEeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCCCCCCcEEEEEEEEEECCCC
Confidence 9999999999999999999999999999999999999999999999999999998876443 25667899999999999
Q ss_pred ccccccCCCcchhhhhhhhhHhHHHHHHHHHHHHhCC--CCccCCCCchhhhhhcccCCCceeeeEEecCCCCCcHHHhH
Q 006826 329 ERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKR--GHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVGETI 406 (630)
Q Consensus 329 Er~~kt~a~g~rl~E~~~INkSLsaLg~VI~aL~~~~--~hiPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~ETl 406 (630)
|+..+.+ .+.+++|+.+||+||.+|++||.+|++++ .||||||||||+||+|+|||||+|+||+||||...+++||+
T Consensus 231 E~~~~~~-~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl 309 (321)
T cd01374 231 ERASQTG-AGERRKEGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNARTAIICTISPASSHVEETL 309 (321)
T ss_pred CccccCC-CCccccccchhhhHHHHHHHHHHHHHhcCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHH
Confidence 9999998 89999999999999999999999999985 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcc
Q 006826 407 CSLSFAKRARGI 418 (630)
Q Consensus 407 sTLrFA~rar~I 418 (630)
+||+||+|+++|
T Consensus 310 ~TL~~a~r~~~i 321 (321)
T cd01374 310 NTLKFASRAKKV 321 (321)
T ss_pred HHHHHHHHHhcC
Confidence 999999999986
No 16
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=7e-78 Score=644.19 Aligned_cols=327 Identities=38% Similarity=0.570 Sum_probs=293.9
Q ss_pred CCEEEEEEeCCCCcccCC-CccccEEecC--CEEEEEeCC----ceEEEEeceeeCCCCChhhHHHhh-HHHHHHhhcCc
Q 006826 92 GCIRVFCRVRSFLVTGRR-VIHEPVLTEL--EKVVVRSGG----SKKEFGFDKVFNQAASQEDVFVEV-EPILRSALDGH 163 (630)
Q Consensus 92 G~IrV~~RvRP~~~~e~~-~~~~~v~~~~--~~v~v~~~~----~~~~F~FD~VF~~~atQ~eVf~~v-~plV~svl~Gy 163 (630)
+||+|+|||||+...|.. ....++.+.+ ..|.+.... ..+.|.||+||+++++|++||+++ .|+|+++++||
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~~G~ 81 (352)
T cd01364 2 SNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGADKQSTKTYTFDKVFGPEADQIEVYSQVVSPILDEVLMGY 81 (352)
T ss_pred CCEEEEEEcCcCCccccccCCCeEEEEcCCCcEEEEcCCCcccccceeEeccccCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 699999999999887643 2344555543 456555432 458999999999999999999986 99999999999
Q ss_pred ceeEEecccCCCCcceeecCCC-----------CCCCchhHHHHHHHHHHhcCCCceEEEEEeEEEEecceeeecCCCCC
Q 006826 164 NVCVLAYGQTGTGKTFTMDGTS-----------DQPGIVPRALEELFRQAALDNSSSVTFSMSMLEVYMGSVRDLLAPKP 232 (630)
Q Consensus 164 N~~IfaYGqTGSGKTyTM~G~~-----------~~~GIIpRal~~LF~~~~~~~~~~~~v~vS~lEIYnE~I~DLL~~~~ 232 (630)
|+||||||||||||||||+|+. +++|||||++++||+.+... ...|.|++||+|||||+|+|||++..
T Consensus 82 n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~-~~~~~v~~S~~EIy~e~v~DLL~~~~ 160 (352)
T cd01364 82 NCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQ-NTEYSVKVSYLELYNEELFDLLSSES 160 (352)
T ss_pred eEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhc-cceeEEEEEEEEeeCCeeeeCCCCcc
Confidence 9999999999999999999974 35899999999999988765 67899999999999999999998764
Q ss_pred ccchhhhhcccCeeEEeC--CCCCEEEcCcEEEEcCChHHHHHHHHhhhhcccccccCCCCCCCCcEEEEEEEEEEecCC
Q 006826 233 VFKAYEAATRCNLNIQTD--AKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDA 310 (630)
Q Consensus 233 ~~~~~~~~~~~~L~i~ed--~~g~v~v~glt~v~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~I~v~~~~~~ 310 (630)
. ....+.++++ ..++++|.|++++.|.+++|+..++..|.++|++++|.+|..|||||+||+|+|.+....
T Consensus 161 ~-------~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~ 233 (352)
T cd01364 161 D-------LNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETT 233 (352)
T ss_pred c-------cCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEeccC
Confidence 2 2236899999 689999999999999999999999999999999999999999999999999999876543
Q ss_pred C--CCceEEeEeEEEecCCCccccccCCCcchhhhhhhhhHhHHHHHHHHHHHHhCCCCccCCCCchhhhhhcccCCCce
Q 006826 311 L--EAKTEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKRGHVPYRNSKLTQILRDSLGDGSK 388 (630)
Q Consensus 311 ~--~~~~~~skL~lVDLAGSEr~~kt~a~g~rl~E~~~INkSLsaLg~VI~aL~~~~~hiPYRdSKLT~LLqdsLgGnsk 388 (630)
. ......|+|+||||||||+..+.++.+.+++|+..||+||++|++||.+|..+..|||||+||||+||+|+|||||+
T Consensus 234 ~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~~~~vpyR~S~LT~lL~~~Lgg~s~ 313 (352)
T cd01364 234 ISGEELVKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEKSPHIPYRESKLTRLLQDSLGGRTK 313 (352)
T ss_pred CCCCccEEEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhcCCCce
Confidence 2 13345799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEecCCCCCcHHHhHHHHHHHHHhhcccccccccH
Q 006826 389 VLMLVHASPCEEDVGETICSLSFAKRARGIESNRELSE 426 (630)
Q Consensus 389 T~mI~~VSP~~~~~~ETlsTLrFA~rar~I~~~~~~~~ 426 (630)
|+||+||||+..+++||++||+||+||++|+|.|.+|.
T Consensus 314 t~~I~~vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~n~ 351 (352)
T cd01364 314 TSIIATISPASINLEETLSTLEYAHRAKNIKNKPEVNQ 351 (352)
T ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccCC
Confidence 99999999999999999999999999999999998875
No 17
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=8.8e-78 Score=636.83 Aligned_cols=316 Identities=40% Similarity=0.605 Sum_probs=291.1
Q ss_pred CCEEEEEEeCCCCcccC-CCccccEEecC-CEEEEEeCCceEEEEeceeeCCCCChhhHHHhh-HHHHHHhhcCcceeEE
Q 006826 92 GCIRVFCRVRSFLVTGR-RVIHEPVLTEL-EKVVVRSGGSKKEFGFDKVFNQAASQEDVFVEV-EPILRSALDGHNVCVL 168 (630)
Q Consensus 92 G~IrV~~RvRP~~~~e~-~~~~~~v~~~~-~~v~v~~~~~~~~F~FD~VF~~~atQ~eVf~~v-~plV~svl~GyN~~If 168 (630)
.+|+|+|||||+...|. .+...++.+.+ +.+.+......+.|.||+||+++++|++||+.+ .|+|+++++|||+|||
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~v~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G~n~~i~ 81 (325)
T cd01369 2 CNIKVVCRFRPLNEKEELRGSKSIVKFPGEDTVSIAGSDDGKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGYNGTIF 81 (325)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEEcCCCEEEecCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHHHcCccceEE
Confidence 38999999999988663 23455566554 467777666678999999999999999999986 9999999999999999
Q ss_pred ecccCCCCcceeecCCCC---CCCchhHHHHHHHHHHhcCC-CceEEEEEeEEEEecceeeecCCCCCccchhhhhcccC
Q 006826 169 AYGQTGTGKTFTMDGTSD---QPGIVPRALEELFRQAALDN-SSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAATRCN 244 (630)
Q Consensus 169 aYGqTGSGKTyTM~G~~~---~~GIIpRal~~LF~~~~~~~-~~~~~v~vS~lEIYnE~I~DLL~~~~~~~~~~~~~~~~ 244 (630)
|||||||||||||+|+.. ++|||||++++||+.+.... ...|.|++||+|||||+++|||++... .
T Consensus 82 ayG~tgSGKT~Tm~G~~~~~~~~Giipr~~~~Lf~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~----------~ 151 (325)
T cd01369 82 AYGQTGSGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVSKD----------N 151 (325)
T ss_pred EeCCCCCCceEEecCCCCccccCChHHHHHHHHHHHHhhccCCceEEEEEEEEEEECCChhhcccCccC----------C
Confidence 999999999999999987 89999999999999876543 568999999999999999999987643 5
Q ss_pred eeEEeCCCCCEEEcCcEEEEcCChHHHHHHHHhhhhcccccccCCCCCCCCcEEEEEEEEEEecCCCCCceEEeEeEEEe
Q 006826 245 LNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDALEAKTEVSKLWMVD 324 (630)
Q Consensus 245 L~i~ed~~g~v~v~glt~v~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~I~v~~~~~~~~~~~~~skL~lVD 324 (630)
+.+++++.++++|+|++++.|.|.+|+..++..|.++|++++|.+|..|||||+||+|+|.+.+... .....|+|+|||
T Consensus 152 l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~-~~~~~s~l~~VD 230 (325)
T cd01369 152 LQVHEDKNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVET-GSKKRGKLFLVD 230 (325)
T ss_pred ceEEEcCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecCC-CCEEEEEEEEEE
Confidence 8999999999999999999999999999999999999999999999999999999999998876544 566789999999
Q ss_pred cCCCccccccCCCcchhhhhhhhhHhHHHHHHHHHHHHhCC-CCccCCCCchhhhhhcccCCCceeeeEEecCCCCCcHH
Q 006826 325 LGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKR-GHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVG 403 (630)
Q Consensus 325 LAGSEr~~kt~a~g~rl~E~~~INkSLsaLg~VI~aL~~~~-~hiPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~ 403 (630)
|||||+..++++.|.+++|+..||+||++|++||.+|.++. .||||||||||+||+|+|||+|+|+||+||||+..+++
T Consensus 231 LAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~~~vpyR~S~LT~lL~~~L~g~s~t~~I~~vsp~~~~~~ 310 (325)
T cd01369 231 LAGSEKVSKTGAEGQTLEEAKKINKSLSALGNVINALTDGKSTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNES 310 (325)
T ss_pred CCCCCcccccCCcchhHHHHHHHhHHHHHHHHHHHHHHcCCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCccccHH
Confidence 99999999999999999999999999999999999999887 99999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHhhcc
Q 006826 404 ETICSLSFAKRARGI 418 (630)
Q Consensus 404 ETlsTLrFA~rar~I 418 (630)
||++||+||+||++|
T Consensus 311 eTl~TL~~a~r~~~i 325 (325)
T cd01369 311 ETLSTLRFGARAKTI 325 (325)
T ss_pred HHHHHHHHHHHhhcC
Confidence 999999999999986
No 18
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=2.4e-77 Score=634.32 Aligned_cols=323 Identities=50% Similarity=0.756 Sum_probs=297.3
Q ss_pred CCCEEEEEEeCCCCcccCCCccccEEecC---CEEEEEeC-CceEEEEeceeeCCCCChhhHHHhhHHHHHHhhcCccee
Q 006826 91 KGCIRVFCRVRSFLVTGRRVIHEPVLTEL---EKVVVRSG-GSKKEFGFDKVFNQAASQEDVFVEVEPILRSALDGHNVC 166 (630)
Q Consensus 91 kG~IrV~~RvRP~~~~e~~~~~~~v~~~~---~~v~v~~~-~~~~~F~FD~VF~~~atQ~eVf~~v~plV~svl~GyN~~ 166 (630)
||+|+|+||+||+...+......++.+.+ ..+.+... ...+.|.||+||+++++|++||+.+.|+|+++++|+|+|
T Consensus 1 ~~~i~V~vRirP~~~~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~f~fD~vf~~~~~q~~v~~~v~p~v~~~~~G~~~~ 80 (329)
T cd01366 1 KGNIRVFCRVRPLLPSESTEYSSVISFPDEDGGTIELSKGTGKKKSFSFDRVFDPDASQEDVFEEVSPLVQSALDGYNVC 80 (329)
T ss_pred CCCEEEEEEcCcCCccccCCCccEEEEcCCCceEEEEeCCCCCceEEecCEEECCCCCHHHHHHHHHHHHHHHhCCCceE
Confidence 69999999999999877544455555543 45666554 566899999999999999999999999999999999999
Q ss_pred EEecccCCCCcceeecCCCCCCCchhHHHHHHHHHHhcCC--CceEEEEEeEEEEecceeeecCCCCCccchhhhhcccC
Q 006826 167 VLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQAALDN--SSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAATRCN 244 (630)
Q Consensus 167 IfaYGqTGSGKTyTM~G~~~~~GIIpRal~~LF~~~~~~~--~~~~~v~vS~lEIYnE~I~DLL~~~~~~~~~~~~~~~~ 244 (630)
|||||+|||||||||+|+.+++|||||++++||+.+.... ++.|.|.+||+|||||+|+|||++... .+..
T Consensus 81 i~ayG~tgSGKT~tl~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~-------~~~~ 153 (329)
T cd01366 81 IFAYGQTGSGKTYTMEGPPENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKPA-------PKKK 153 (329)
T ss_pred EEEeCCCCCCCcEEecCCCCCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCcC-------CCCc
Confidence 9999999999999999999999999999999999876554 689999999999999999999997641 2246
Q ss_pred eeEEeCCCCCEEEcCcEEEEcCChHHHHHHHHhhhhcccccccCCCCCCCCcEEEEEEEEEEecCCCCCceEEeEeEEEe
Q 006826 245 LNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDALEAKTEVSKLWMVD 324 (630)
Q Consensus 245 L~i~ed~~g~v~v~glt~v~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~I~v~~~~~~~~~~~~~skL~lVD 324 (630)
+.|++++.++++|.|++++.|.+++|+..++..|.++|.+++|.+|..|||||+||+|+|.+.+... +....|+|+|||
T Consensus 154 l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~-~~~~~s~l~~VD 232 (329)
T cd01366 154 LEIKHDSKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQT-GEQTRGKLNLVD 232 (329)
T ss_pred eEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCCC-CcEEEEEEEEEE
Confidence 8999999999999999999999999999999999999999999999999999999999999876553 667889999999
Q ss_pred cCCCccccccCCCcchhhhhhhhhHhHHHHHHHHHHHHhCCCCccCCCCchhhhhhcccCCCceeeeEEecCCCCCcHHH
Q 006826 325 LGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKRGHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVGE 404 (630)
Q Consensus 325 LAGSEr~~kt~a~g~rl~E~~~INkSLsaLg~VI~aL~~~~~hiPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~E 404 (630)
|||||+..+.++.|.+++|+..||+||.+|++||.+|+.+..|||||+||||+||+|+|||+++|+||+||||...+++|
T Consensus 233 LaGsE~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~~~~ipyr~S~LT~lL~~~l~g~~~t~~i~~vsp~~~~~~e 312 (329)
T cd01366 233 LAGSERLKKSGATGDRLKEAQAINKSLSALGDVISALRSKDSHVPYRNSKLTYLLQDSLGGNSKTLMFVNISPLESNLSE 312 (329)
T ss_pred CCCCcccccccccchhhHhHhhhhhHHHHHHHHHHHHhcCCCcCCCcccHhHHHHHHhcCCCceEEEEEEeCCchhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhccccc
Q 006826 405 TICSLSFAKRARGIESN 421 (630)
Q Consensus 405 TlsTLrFA~rar~I~~~ 421 (630)
|++||+||+++++|+++
T Consensus 313 tl~tL~~a~~~~~i~~~ 329 (329)
T cd01366 313 TLCSLRFASRVRSVELG 329 (329)
T ss_pred HHHHHHHHHHhhcccCC
Confidence 99999999999999874
No 19
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=1.9e-77 Score=636.63 Aligned_cols=317 Identities=39% Similarity=0.572 Sum_probs=288.5
Q ss_pred CEEEEEEeCCCCcccCC-CccccEEec--CCEEEEEeC-----CceEEEEeceeeCCCCChhhHHHhh-HHHHHHhhcCc
Q 006826 93 CIRVFCRVRSFLVTGRR-VIHEPVLTE--LEKVVVRSG-----GSKKEFGFDKVFNQAASQEDVFVEV-EPILRSALDGH 163 (630)
Q Consensus 93 ~IrV~~RvRP~~~~e~~-~~~~~v~~~--~~~v~v~~~-----~~~~~F~FD~VF~~~atQ~eVf~~v-~plV~svl~Gy 163 (630)
||+|+|||||+...+.. +...++.++ ...+.+... ...+.|.||+||+++++|++||+.+ .|+|+++++||
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~~~~G~ 81 (333)
T cd01371 2 NVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKADAKEPPKVFTFDAVYDPNSTQEDVYNETARPLVDSVLEGY 81 (333)
T ss_pred CeEEEEEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCcccccCCCceeeeccccCCCccHHHHHHHHHHHHHHHHhCCC
Confidence 79999999999886643 334455554 345566543 2358899999999999999999986 99999999999
Q ss_pred ceeEEecccCCCCcceeecCCCC---CCCchhHHHHHHHHHHhcCCCceEEEEEeEEEEecceeeecCCCCCccchhhhh
Q 006826 164 NVCVLAYGQTGTGKTFTMDGTSD---QPGIVPRALEELFRQAALDNSSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAA 240 (630)
Q Consensus 164 N~~IfaYGqTGSGKTyTM~G~~~---~~GIIpRal~~LF~~~~~~~~~~~~v~vS~lEIYnE~I~DLL~~~~~~~~~~~~ 240 (630)
|+||||||||||||||||+|+.. ++|||||++++||+.+.......|.|.+||+|||||+|+|||++...
T Consensus 82 n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~Lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~------- 154 (333)
T cd01371 82 NGTIFAYGQTGTGKTFTMEGVREPPELRGIIPNSFAHIFGHIAKAENVQFLVRVSYLEIYNEEVRDLLGKDQK------- 154 (333)
T ss_pred ceeEEecCCCCCCCcEeecCCCCcccccchHHHHHHHHHHHHhhccCccEEEEEEEEEeeCCeeeeCCCCCCC-------
Confidence 99999999999999999999887 99999999999999988777788999999999999999999987542
Q ss_pred cccCeeEEeCCCCCEEEcCcEEEEcCChHHHHHHHHhhhhcccccccCCCCCCCCcEEEEEEEEEEecCCC--CCceEEe
Q 006826 241 TRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDAL--EAKTEVS 318 (630)
Q Consensus 241 ~~~~L~i~ed~~g~v~v~glt~v~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~I~v~~~~~~~--~~~~~~s 318 (630)
..+.+++++.++++|.|++++.|.+++++..++..|.++|++++|.+|..|||||+||+|+|.+.+... ......|
T Consensus 155 --~~l~i~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s 232 (333)
T cd01371 155 --KKLELKERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGEDGENHIRVG 232 (333)
T ss_pred --CceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccCCCCCcEEEE
Confidence 258999999999999999999999999999999999999999999999999999999999998765432 3556689
Q ss_pred EeEEEecCCCccccccCCCcchhhhhhhhhHhHHHHHHHHHHHHhCCC-CccCCCCchhhhhhcccCCCceeeeEEecCC
Q 006826 319 KLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKRG-HVPYRNSKLTQILRDSLGDGSKVLMLVHASP 397 (630)
Q Consensus 319 kL~lVDLAGSEr~~kt~a~g~rl~E~~~INkSLsaLg~VI~aL~~~~~-hiPYRdSKLT~LLqdsLgGnskT~mI~~VSP 397 (630)
+|+||||||||+..++++.|.+++|+..||+||.+|++||.+|.++.. ||||||||||+||+|+|||||+|+||+||+|
T Consensus 233 ~L~~VDLAGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~~~~~ipyR~SkLT~lL~~~l~g~s~t~~I~~vsP 312 (333)
T cd01371 233 KLNLVDLAGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNSKTVMCANIGP 312 (333)
T ss_pred EEEEEECCCCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCceEEEEEEeCC
Confidence 999999999999999999999999999999999999999999998875 9999999999999999999999999999999
Q ss_pred CCCcHHHhHHHHHHHHHhhcc
Q 006826 398 CEEDVGETICSLSFAKRARGI 418 (630)
Q Consensus 398 ~~~~~~ETlsTLrFA~rar~I 418 (630)
...+++||++||+||+|||+|
T Consensus 313 ~~~~~~eTl~TL~fa~r~r~I 333 (333)
T cd01371 313 ADYNYDETLSTLRYANRAKNI 333 (333)
T ss_pred ccccHHHHHHHHHHHHHhhcC
Confidence 999999999999999999987
No 20
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=1.1e-76 Score=632.30 Aligned_cols=317 Identities=40% Similarity=0.617 Sum_probs=285.9
Q ss_pred CEEEEEEeCCCCcccCCC-ccccEEecCC--EEEEEeCCceEEEEeceeeCCCCChhhHHHhh-HHHHHHhhcCcceeEE
Q 006826 93 CIRVFCRVRSFLVTGRRV-IHEPVLTELE--KVVVRSGGSKKEFGFDKVFNQAASQEDVFVEV-EPILRSALDGHNVCVL 168 (630)
Q Consensus 93 ~IrV~~RvRP~~~~e~~~-~~~~v~~~~~--~v~v~~~~~~~~F~FD~VF~~~atQ~eVf~~v-~plV~svl~GyN~~If 168 (630)
+|+|+||+||+...|... ...++.+.+. .+.+. ..+.|.||+||+++++|++||+.+ .|+|+++++|||+|||
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~---~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ 78 (341)
T cd01372 2 SVRVAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVG---TDKSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGYNATVL 78 (341)
T ss_pred CeEEEEECCCCCchhcccCCCeEEEEeCCCCEEEec---CCcEEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCcccee
Confidence 699999999998766433 3445555443 34432 257899999999999999999986 8999999999999999
Q ss_pred ecccCCCCcceeecCCC------CCCCchhHHHHHHHHHHhcCC-CceEEEEEeEEEEecceeeecCCCCCccchhhhhc
Q 006826 169 AYGQTGTGKTFTMDGTS------DQPGIVPRALEELFRQAALDN-SSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAAT 241 (630)
Q Consensus 169 aYGqTGSGKTyTM~G~~------~~~GIIpRal~~LF~~~~~~~-~~~~~v~vS~lEIYnE~I~DLL~~~~~~~~~~~~~ 241 (630)
|||||||||||||+|+. +++|||||++++||+.+.... ...|.|.|||+|||||+|+|||.+... .
T Consensus 79 ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~-------~ 151 (341)
T cd01372 79 AYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPSTS-------E 151 (341)
T ss_pred eecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhccccceEEEEEEEEEeECCeeecCCCCccc-------C
Confidence 99999999999999974 579999999999999887655 478999999999999999999987641 1
Q ss_pred ccCeeEEeCCCCCEEEcCcEEEEcCChHHHHHHHHhhhhcccccccCCCCCCCCcEEEEEEEEEEecCC---------CC
Q 006826 242 RCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDA---------LE 312 (630)
Q Consensus 242 ~~~L~i~ed~~g~v~v~glt~v~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~I~v~~~~~~---------~~ 312 (630)
...+.|++++.++++|.|++++.|.+++|++.+|..|.++|.+++|.+|..|||||+||+|+|.+.... ..
T Consensus 152 ~~~l~i~e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~ 231 (341)
T cd01372 152 KSPIQIREDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDK 231 (341)
T ss_pred CCCceEEECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCccccccccCC
Confidence 236899999999999999999999999999999999999999999999999999999999999887653 23
Q ss_pred CceEEeEeEEEecCCCccccccCCCcchhhhhhhhhHhHHHHHHHHHHHHhCC---CCccCCCCchhhhhhcccCCCcee
Q 006826 313 AKTEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKR---GHVPYRNSKLTQILRDSLGDGSKV 389 (630)
Q Consensus 313 ~~~~~skL~lVDLAGSEr~~kt~a~g~rl~E~~~INkSLsaLg~VI~aL~~~~---~hiPYRdSKLT~LLqdsLgGnskT 389 (630)
.....|+|+||||||||+..++++.|.+++|+..||+||.+|++||.+|..++ .|||||+||||+||+|+||||++|
T Consensus 232 ~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~~~~~ipyR~S~LT~lL~~~Lgg~s~t 311 (341)
T cd01372 232 NSTLTSKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESKKGSHVPYRDSKLTRLLQDSLGGNSHT 311 (341)
T ss_pred CceeeEEEEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHhcCCCceE
Confidence 45678999999999999999999999999999999999999999999999876 799999999999999999999999
Q ss_pred eeEEecCCCCCcHHHhHHHHHHHHHhhccc
Q 006826 390 LMLVHASPCEEDVGETICSLSFAKRARGIE 419 (630)
Q Consensus 390 ~mI~~VSP~~~~~~ETlsTLrFA~rar~I~ 419 (630)
+||+||||...+++||++||+||+||++|+
T Consensus 312 ~~I~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 312 LMIACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 999999999999999999999999999985
No 21
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=3e-76 Score=627.59 Aligned_cols=315 Identities=40% Similarity=0.574 Sum_probs=280.6
Q ss_pred CEEEEEEeCCCCcccCCCccccEEec--CCEEEEE-----------eCCceEEEEeceeeCCCCChhhHHHhh-HHHHHH
Q 006826 93 CIRVFCRVRSFLVTGRRVIHEPVLTE--LEKVVVR-----------SGGSKKEFGFDKVFNQAASQEDVFVEV-EPILRS 158 (630)
Q Consensus 93 ~IrV~~RvRP~~~~e~~~~~~~v~~~--~~~v~v~-----------~~~~~~~F~FD~VF~~~atQ~eVf~~v-~plV~s 158 (630)
.|+|+|||||+...+.. .+.++ ...+.+. .....+.|.||+||++ ++|++||+.+ .|+|++
T Consensus 1 ~i~V~vRvRP~~~~~~~----~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~q~~vy~~~~~p~v~~ 75 (334)
T cd01375 1 TIQVFVRVRPTPTKQGS----SIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-ASQEEVYETVAKPVVDS 75 (334)
T ss_pred CeEEEEECCCCCCCCCc----cEEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-CCHHHHHHHHHHHHHHH
Confidence 48999999999874332 12222 2233332 2334578999999999 9999999997 999999
Q ss_pred hhcCcceeEEecccCCCCcceeecCCC---CCCCchhHHHHHHHHHHhcCCCceEEEEEeEEEEecceeeecCCCCCccc
Q 006826 159 ALDGHNVCVLAYGQTGTGKTFTMDGTS---DQPGIVPRALEELFRQAALDNSSSVTFSMSMLEVYMGSVRDLLAPKPVFK 235 (630)
Q Consensus 159 vl~GyN~~IfaYGqTGSGKTyTM~G~~---~~~GIIpRal~~LF~~~~~~~~~~~~v~vS~lEIYnE~I~DLL~~~~~~~ 235 (630)
+++|||+||||||||||||||||+|+. .++|||||++++||+.+....+..|.|++||+|||||+|+|||++.+..
T Consensus 76 ~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~- 154 (334)
T cd01375 76 ALDGYNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQVFREVAMRATKTYTVHVSYLEIYNEQLYDLLGDTPEA- 154 (334)
T ss_pred HhCCCccceeeecCCCCCCeEEccCCCCcccCCchHHHHHHHHHHHHHhccCcceEEEEEEEEEECCEeecCCCCCccc-
Confidence 999999999999999999999999976 4789999999999999988888899999999999999999999987531
Q ss_pred hhhhhcccCeeEEeCCCCCEEEcCcEEEEcCChHHHHHHHHhhhhcccccccCCCCCCCCcEEEEEEEEEEecCC-CCCc
Q 006826 236 AYEAATRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDA-LEAK 314 (630)
Q Consensus 236 ~~~~~~~~~L~i~ed~~g~v~v~glt~v~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~I~v~~~~~~-~~~~ 314 (630)
......+.|++++.++++|.|++++.|.+++|++.++..|.++|.+++|.+|..|||||+||+|+|.+.... ....
T Consensus 155 ---~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~~~~~~ 231 (334)
T cd01375 155 ---LESLPAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSREAGSEV 231 (334)
T ss_pred ---cccCCceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEecCCCCCc
Confidence 112346899999999999999999999999999999999999999999999999999999999999876322 2245
Q ss_pred eEEeEeEEEecCCCccccccCCCcchhhhhhhhhHhHHHHHHHHHHHHhCC-CCccCCCCchhhhhhcccCCCceeeeEE
Q 006826 315 TEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKR-GHVPYRNSKLTQILRDSLGDGSKVLMLV 393 (630)
Q Consensus 315 ~~~skL~lVDLAGSEr~~kt~a~g~rl~E~~~INkSLsaLg~VI~aL~~~~-~hiPYRdSKLT~LLqdsLgGnskT~mI~ 393 (630)
...|+|+||||||||+..++++.|..++|+..||+||++|++||.+|+++. .||||||||||+||+|+|||||+|+||+
T Consensus 232 ~~~s~l~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~~~~ipyRdSkLT~lL~d~Lgg~~~t~~I~ 311 (334)
T cd01375 232 VRLSKLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKARTHVPYRNSKLTHVLRDSLGGNCKTVMLA 311 (334)
T ss_pred eEEEEEEEEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhcCCCceEEEEE
Confidence 678999999999999999999999999999999999999999999999988 9999999999999999999999999999
Q ss_pred ecCCCCCcHHHhHHHHHHHHHhh
Q 006826 394 HASPCEEDVGETICSLSFAKRAR 416 (630)
Q Consensus 394 ~VSP~~~~~~ETlsTLrFA~rar 416 (630)
||||...+++||++||+||+|++
T Consensus 312 ~vsp~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 312 TIWVEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred EeCCchhhHHHHHHHHHHHHhcC
Confidence 99999999999999999999984
No 22
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=6.2e-73 Score=601.61 Aligned_cols=322 Identities=44% Similarity=0.662 Sum_probs=293.8
Q ss_pred CEEEEEEeCCCCcccCC-CccccEEecCC---EEEEEeC---CceEEEEeceeeCCCCChhhHHHhh-HHHHHHhhcCcc
Q 006826 93 CIRVFCRVRSFLVTGRR-VIHEPVLTELE---KVVVRSG---GSKKEFGFDKVFNQAASQEDVFVEV-EPILRSALDGHN 164 (630)
Q Consensus 93 ~IrV~~RvRP~~~~e~~-~~~~~v~~~~~---~v~v~~~---~~~~~F~FD~VF~~~atQ~eVf~~v-~plV~svl~GyN 164 (630)
+|+|+|||||+...+.. ....++.+.++ .+.+... +..+.|.||+||+++++|++||+.+ .|+|+++++|+|
T Consensus 1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~G~~ 80 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPKNRKEEKKFTFDKVFGATASQEDVFEETAAPLVDSVLEGYN 80 (335)
T ss_pred CcEEEEEcCcCCccchhcCCceEEEEcCCCCCEEEEeCCCCCCCCeEEecCEEECCCCChHHHHHHHHHHHHHHHhcCCc
Confidence 69999999999887643 34556666543 5666542 3458999999999999999999986 999999999999
Q ss_pred eeEEecccCCCCcceeecCCCCCCCchhHHHHHHHHHHhcCC-CceEEEEEeEEEEecceeeecCCCCCccchhhhhccc
Q 006826 165 VCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQAALDN-SSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAATRC 243 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM~G~~~~~GIIpRal~~LF~~~~~~~-~~~~~v~vS~lEIYnE~I~DLL~~~~~~~~~~~~~~~ 243 (630)
+||||||+|||||||||+|+.+++|||||++++||+.+.... ...|.|++||+|||||+|+|||++...
T Consensus 81 ~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~~~---------- 150 (335)
T smart00129 81 ATIFAYGQTGSGKTYTMSGTPDSPGIIPRALKDLFEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLNPSPK---------- 150 (335)
T ss_pred eeEEEeCCCCCCCceEecCCCCCCCHHHHHHHHHHHHhhhcccCceEEEEEEEEEEECCEEEECcCCCCC----------
Confidence 999999999999999999999999999999999999876544 678999999999999999999987643
Q ss_pred CeeEEeCCCCCEEEcCcEEEEcCChHHHHHHHHhhhhcccccccCCCCCCCCcEEEEEEEEEEe--cCCCCCceEEeEeE
Q 006826 244 NLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRH--GDALEAKTEVSKLW 321 (630)
Q Consensus 244 ~L~i~ed~~g~v~v~glt~v~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~I~v~~~--~~~~~~~~~~skL~ 321 (630)
.+.+++++.+++++.|++++.|.|++|+..++..|.++|.+++|.+|..|||||+||+|+|.+. +... .....|+|+
T Consensus 151 ~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~~~~-~~~~~s~l~ 229 (335)
T smart00129 151 KLEIREDKKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKNSSS-GSGKASKLN 229 (335)
T ss_pred CcEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecCCCC-CCEEEEEEE
Confidence 6899999999999999999999999999999999999999999999999999999999999965 3333 667889999
Q ss_pred EEecCCCccccccCCCcchhhhhhhhhHhHHHHHHHHHHHHh--CCCCccCCCCchhhhhhcccCCCceeeeEEecCCCC
Q 006826 322 MVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRR--KRGHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCE 399 (630)
Q Consensus 322 lVDLAGSEr~~kt~a~g~rl~E~~~INkSLsaLg~VI~aL~~--~~~hiPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~ 399 (630)
||||||+|+..+.++.|.+++|+..||+||.+|++||.+|++ +..|||||+|+||+||+++|||+++|+||+||||..
T Consensus 230 ~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~~~~~~ip~r~S~LT~lL~~~L~g~~~~~~i~~vsp~~ 309 (335)
T smart00129 230 LVDLAGSERASKTGAEGDRLKEAGNINKSLSALGNVINALADGQKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSL 309 (335)
T ss_pred EEECCCCCccccccChhHHHHhhchhhhHHHHHHHHHHHHHhcCCCCCCCCcCcHhHHHHHHHcCCCCeEEEEEEcCCCc
Confidence 999999999999999999999999999999999999999998 577999999999999999999999999999999999
Q ss_pred CcHHHhHHHHHHHHHhhccccccccc
Q 006826 400 EDVGETICSLSFAKRARGIESNRELS 425 (630)
Q Consensus 400 ~~~~ETlsTLrFA~rar~I~~~~~~~ 425 (630)
++++||++||+||+++++|++.|.++
T Consensus 310 ~~~~eTl~tL~~a~~~~~i~~~p~~~ 335 (335)
T smart00129 310 SNLEETLSTLRFASRAKEIKNKAIVN 335 (335)
T ss_pred cchHHHHHHHHHHHHHhhcccCCCcC
Confidence 99999999999999999999998763
No 23
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=6.5e-73 Score=599.27 Aligned_cols=316 Identities=42% Similarity=0.646 Sum_probs=292.3
Q ss_pred CEEEEEEeCCCCcccCCCccccEEecC-CEEEEEeCC-----ceEEEEeceeeCCCCChhhHHHhh-HHHHHHhhcCcce
Q 006826 93 CIRVFCRVRSFLVTGRRVIHEPVLTEL-EKVVVRSGG-----SKKEFGFDKVFNQAASQEDVFVEV-EPILRSALDGHNV 165 (630)
Q Consensus 93 ~IrV~~RvRP~~~~e~~~~~~~v~~~~-~~v~v~~~~-----~~~~F~FD~VF~~~atQ~eVf~~v-~plV~svl~GyN~ 165 (630)
+|+|||||||+...+......++.+++ +.+.+.... ..+.|.||+||+++++|++||+.+ .|+|+++++|||+
T Consensus 1 ~i~V~vRvrP~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~G~~~ 80 (328)
T cd00106 1 NIRVVVRIRPLNGRESKSEESCITVDDNKTVTLTPPKDGRKAGPKSFTFDHVFDPNSTQEDVYETTAKPLVESVLEGYNG 80 (328)
T ss_pred CeEEEEEcCCCCcccccCCCcEEEECCCCEEEEecCccccCcCceEEECCeEEcCCCCHHHHHHHHHHHHHHHHhCCCce
Confidence 699999999998877566777888877 788887643 358999999999999999999987 8999999999999
Q ss_pred eEEecccCCCCcceeecCCCCCCCchhHHHHHHHHHHhcCC--CceEEEEEeEEEEecceeeecCCCCCccchhhhhccc
Q 006826 166 CVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQAALDN--SSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAATRC 243 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM~G~~~~~GIIpRal~~LF~~~~~~~--~~~~~v~vS~lEIYnE~I~DLL~~~~~~~~~~~~~~~ 243 (630)
||||||||||||||||+|+.+++|||||++++||+.+.... ...|.|.+||+|||+|+|+|||++... ..
T Consensus 81 ~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~--------~~ 152 (328)
T cd00106 81 TIFAYGQTGSGKTYTMFGSPKDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEPP--------SK 152 (328)
T ss_pred eEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCCC--------CC
Confidence 99999999999999999999999999999999999887665 578999999999999999999998621 23
Q ss_pred CeeEEeCCCCCEEEcCcEEEEcCChHHHHHHHHhhhhcccccccCCCCCCCCcEEEEEEEEEEecCCCCC-ceEEeEeEE
Q 006826 244 NLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDALEA-KTEVSKLWM 322 (630)
Q Consensus 244 ~L~i~ed~~g~v~v~glt~v~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~I~v~~~~~~~~~-~~~~skL~l 322 (630)
.+.+++++.+++++.|++++.|.|++|+..++..|.++|.++.|.+|..|||||+||+|+|......... ....|+|+|
T Consensus 153 ~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~s~l~~ 232 (328)
T cd00106 153 PLSLREDPKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTNDGRSIKSSKLNL 232 (328)
T ss_pred CcEEEEcCCCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCCCCccEEEEEEEE
Confidence 6899999999999999999999999999999999999999999999999999999999999987654321 367899999
Q ss_pred EecCCCccccccCCCcchhhhhhhhhHhHHHHHHHHHHHHhCC--CCccCCCCchhhhhhcccCCCceeeeEEecCCCCC
Q 006826 323 VDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKR--GHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEE 400 (630)
Q Consensus 323 VDLAGSEr~~kt~a~g~rl~E~~~INkSLsaLg~VI~aL~~~~--~hiPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~ 400 (630)
|||||+|+..+.+..+.+++|+..||+||.+|++||.+|+.+. .|||||+||||+||+|+|||+++|+||+||||...
T Consensus 233 VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~~~~ip~r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~ 312 (328)
T cd00106 233 VDLAGSERAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQKKKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSE 312 (328)
T ss_pred EECCCCCcccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcCCCCcCCCcCcHHHHHHHHhcCCCCeEEEEEEeCCchh
Confidence 9999999999999999999999999999999999999999988 99999999999999999999999999999999999
Q ss_pred cHHHhHHHHHHHHHhh
Q 006826 401 DVGETICSLSFAKRAR 416 (630)
Q Consensus 401 ~~~ETlsTLrFA~rar 416 (630)
+++||++||+||+|||
T Consensus 313 ~~~eTl~tL~~a~r~~ 328 (328)
T cd00106 313 NYDETLSTLRFASRAK 328 (328)
T ss_pred hHHHHHHHHHHHHhcC
Confidence 9999999999999985
No 24
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=2e-72 Score=597.10 Aligned_cols=314 Identities=43% Similarity=0.647 Sum_probs=275.0
Q ss_pred EeCCCCcccCCC-ccccEEecC--CEEE-----EEeCCceEEEEeceeeCCCCChhhHHHhh-HHHHHHhhcCcceeEEe
Q 006826 99 RVRSFLVTGRRV-IHEPVLTEL--EKVV-----VRSGGSKKEFGFDKVFNQAASQEDVFVEV-EPILRSALDGHNVCVLA 169 (630)
Q Consensus 99 RvRP~~~~e~~~-~~~~v~~~~--~~v~-----v~~~~~~~~F~FD~VF~~~atQ~eVf~~v-~plV~svl~GyN~~Ifa 169 (630)
||||+...|... ....+.... .... .........|.||+||+++++|++||+.+ .|+|+++++|||+||||
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~a 80 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQDSNQNKQSVNSNNSQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATIFA 80 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETTETEEEEEETTEEETTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEEEE
T ss_pred CcCCCCHHHHhCCCcEEEEecCCccccccccccccCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEEEe
Confidence 899999866443 223333321 1111 12344568999999999999999999986 99999999999999999
Q ss_pred cccCCCCcceeecCC--CCCCCchhHHHHHHHHHHhcCCC---ceEEEEEeEEEEecceeeecCCCCCccchhhhhcccC
Q 006826 170 YGQTGTGKTFTMDGT--SDQPGIVPRALEELFRQAALDNS---SSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAATRCN 244 (630)
Q Consensus 170 YGqTGSGKTyTM~G~--~~~~GIIpRal~~LF~~~~~~~~---~~~~v~vS~lEIYnE~I~DLL~~~~~~~~~~~~~~~~ 244 (630)
||||||||||||+|+ ..++|||||++++||..+..... +.|.|+|||+|||||+|+|||++... .....
T Consensus 81 yG~tgSGKT~Tm~G~~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~------~~~~~ 154 (335)
T PF00225_consen 81 YGQTGSGKTYTMFGSNDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNS------KSRKP 154 (335)
T ss_dssp EESTTSSHHHHHTBSTSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSS------STTSE
T ss_pred eccccccccccccccccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCcccc------ccccc
Confidence 999999999999999 89999999999999998876543 68999999999999999999998741 11236
Q ss_pred eeEEeCCCCC-EEEcCcEEEEcCChHHHHHHHHhhhhcccccccCCCCCCCCcEEEEEEEEEEecCCCCCc---eEEeEe
Q 006826 245 LNIQTDAKGT-VEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDALEAK---TEVSKL 320 (630)
Q Consensus 245 L~i~ed~~g~-v~v~glt~v~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~I~v~~~~~~~~~~---~~~skL 320 (630)
+.|++++..+ ++|.|++++.|.+++++..+|..|.++|.++.|.+|..|||||+||+|+|.+........ ...|+|
T Consensus 155 l~i~~~~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~~~~~~s~l 234 (335)
T PF00225_consen 155 LKIREDSNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDDEESVKHSRL 234 (335)
T ss_dssp BEEEEETTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTEEEEEEEEEE
T ss_pred cceeeccccccceeeccccccccccccccccccchhhccccccccccccccccccccccccccccccccccccceeecce
Confidence 8999999865 999999999999999999999999999999999999999999999999999887655332 578999
Q ss_pred EEEecCCCccccccCC-CcchhhhhhhhhHhHHHHHHHHHHHHhC--CCCccCCCCchhhhhhcccCCCceeeeEEecCC
Q 006826 321 WMVDLGGSERVLKTGA-TGQTLDEGRAINLSLSALADVIAALRRK--RGHVPYRNSKLTQILRDSLGDGSKVLMLVHASP 397 (630)
Q Consensus 321 ~lVDLAGSEr~~kt~a-~g~rl~E~~~INkSLsaLg~VI~aL~~~--~~hiPYRdSKLT~LLqdsLgGnskT~mI~~VSP 397 (630)
+||||||+|+..+.++ .+.+++|+..||+||.+|++||.+|+.+ ..|||||+||||+||+|+|||||+|+||+||||
T Consensus 235 ~~vDLaGsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I~~vsp 314 (335)
T PF00225_consen 235 TFVDLAGSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQGSKQSHVPYRDSKLTRLLKDSLGGNSKTILIVCVSP 314 (335)
T ss_dssp EEEEEEESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTSSSCGGGSHHHHHTGGGTSSSSEEEEEEEE-S
T ss_pred eeeecccccccccccccccccccccceecchhhhhhhhHhhhhccccchhhhhhcccccceecccccccccceeEEEcCC
Confidence 9999999999999987 4788999999999999999999999998 899999999999999999999999999999999
Q ss_pred CCCcHHHhHHHHHHHHHhhcc
Q 006826 398 CEEDVGETICSLSFAKRARGI 418 (630)
Q Consensus 398 ~~~~~~ETlsTLrFA~rar~I 418 (630)
...+++||++||+||.++++|
T Consensus 315 ~~~~~~eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 315 SSEDYEETLSTLRFASRAREI 335 (335)
T ss_dssp BGGGHHHHHHHHHHHHHHTTE
T ss_pred ccccHHHHHHHHHHHHHHcCC
Confidence 999999999999999999987
No 25
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.5e-68 Score=585.16 Aligned_cols=327 Identities=34% Similarity=0.536 Sum_probs=286.0
Q ss_pred cCCCCEEEEEEeCCCCc-ccCCCccccEEecCCEEEEEe----------CC--ceEEEEeceeeCCCCChhhHHHhh-HH
Q 006826 89 DIKGCIRVFCRVRSFLV-TGRRVIHEPVLTELEKVVVRS----------GG--SKKEFGFDKVFNQAASQEDVFVEV-EP 154 (630)
Q Consensus 89 elkG~IrV~~RvRP~~~-~e~~~~~~~v~~~~~~v~v~~----------~~--~~~~F~FD~VF~~~atQ~eVf~~v-~p 154 (630)
+.+..|.|+|||||+.. .+. ..++...+..+|++.. ++ ..+.|.|-+||+|+++|.+||+.+ .|
T Consensus 28 ~~~d~v~v~~rvrP~~~~~~~--~g~l~v~n~~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~tQ~dvF~~~~~p 105 (809)
T KOG0247|consen 28 ESKDPVLVVCRVRPLSDASED--EGCLRVINEETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVTQADVFDTTVAP 105 (809)
T ss_pred hhhcchheeEeecCCCCCccc--cceEEEeccceeEeeCcHHHHhhhccCccceeeEeeeeeecCCCccHHHHHHHHhHH
Confidence 45678999999999885 222 2333444556666641 22 238999999999999999999986 99
Q ss_pred HHHHhhcCcceeEEecccCCCCcceeecCCCCCCCchhHHHHHHHHHHh-------------------------------
Q 006826 155 ILRSALDGHNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQAA------------------------------- 203 (630)
Q Consensus 155 lV~svl~GyN~~IfaYGqTGSGKTyTM~G~~~~~GIIpRal~~LF~~~~------------------------------- 203 (630)
+|.+.+.|.|..+|+||-|||||||||+|+++++||+||+++-||..+.
T Consensus 106 lV~dlLkgqn~LlFTyGVTgSGKTYTm~G~~~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~alL~lkr 185 (809)
T KOG0247|consen 106 LVKDLLKGQNSLLFTYGVTGSGKTYTMTGTPDRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDALLQLKR 185 (809)
T ss_pred HHHHHHcccceeEEEeeccCCCceEEeecCCCCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999999999999999999999995221
Q ss_pred ----------------------------------cCCCceEEEEEeEEEEecceeeecCCCCCccchhhhhcccCeeEEe
Q 006826 204 ----------------------------------LDNSSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAATRCNLNIQT 249 (630)
Q Consensus 204 ----------------------------------~~~~~~~~v~vS~lEIYnE~I~DLL~~~~~~~~~~~~~~~~L~i~e 249 (630)
.+.+..|.|+|||+|||||-|||||.+.+..+... ....+++
T Consensus 186 ~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~~~----~~~ll~~ 261 (809)
T KOG0247|consen 186 EAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQGKLQ----KLKLLRE 261 (809)
T ss_pred hhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccccchhh----hhhhhhh
Confidence 01244689999999999999999998876532221 1256789
Q ss_pred CCCCCEEEcCcEEEEcCChHHHHHHHHhhhhcccccccCCCCCCCCcEEEEEEEEEEecCC-CCCceEEeEeEEEecCCC
Q 006826 250 DAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDA-LEAKTEVSKLWMVDLGGS 328 (630)
Q Consensus 250 d~~g~v~v~glt~v~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~I~v~~~~~~-~~~~~~~skL~lVDLAGS 328 (630)
|.+|..||.|+++|.|.+.+|++++|..|.++|++++|.+|..|||||+||+|.|.+.... .......|.|.|||||||
T Consensus 262 d~~~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~~~s~~i~vSqlsLvDLAGS 341 (809)
T KOG0247|consen 262 DTNGNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRSQDSNQITVSQLSLVDLAGS 341 (809)
T ss_pred ccCCCeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeecccccccCceeEEeeeeeecccc
Confidence 9999999999999999999999999999999999999999999999999999999887655 336778899999999999
Q ss_pred ccccccCCCcchhhhhhhhhHhHHHHHHHHHHHHhC-----CCCccCCCCchhhhhhcccCCCceeeeEEecCCCCCcHH
Q 006826 329 ERVLKTGATGQTLDEGRAINLSLSALADVIAALRRK-----RGHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVG 403 (630)
Q Consensus 329 Er~~kt~a~g~rl~E~~~INkSLsaLg~VI~aL~~~-----~~hiPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~ 403 (630)
||..+++..|.||+||++||.||.+||.||.+|+++ +.+|||||||||++++.+|.|..+++||+||+|.+++|+
T Consensus 342 ERt~rtq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~vnp~~e~Yd 421 (809)
T KOG0247|consen 342 ERTNRTQNSGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCVNPKAEDYD 421 (809)
T ss_pred hhcccccchhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHhcCCCCcEEEEEecCCchhhHH
Confidence 999999999999999999999999999999999864 378999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHhhccccc
Q 006826 404 ETICSLSFAKRARGIESN 421 (630)
Q Consensus 404 ETlsTLrFA~rar~I~~~ 421 (630)
|+++.|+||.-+..|...
T Consensus 422 Enl~vlkFaeiaq~v~v~ 439 (809)
T KOG0247|consen 422 ENLNVLKFAEIAQEVEVA 439 (809)
T ss_pred HHHHHHHHHHhccccccc
Confidence 999999999999998643
No 26
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.1e-67 Score=565.45 Aligned_cols=314 Identities=32% Similarity=0.467 Sum_probs=277.5
Q ss_pred CCEEEEEEeCCCCcccCCC-ccccEEecC-CEEEEEe---------CCceEEEEeceeeCCCCChhhHHHh-hHHHHHHh
Q 006826 92 GCIRVFCRVRSFLVTGRRV-IHEPVLTEL-EKVVVRS---------GGSKKEFGFDKVFNQAASQEDVFVE-VEPILRSA 159 (630)
Q Consensus 92 G~IrV~~RvRP~~~~e~~~-~~~~v~~~~-~~v~v~~---------~~~~~~F~FD~VF~~~atQ~eVf~~-v~plV~sv 159 (630)
..|.|.||=||++..|... ...++.+.. +.+++.. .-..+.|.||++||+.++++.||.. ++|||..+
T Consensus 208 hrI~VCVRKRPLnkkE~~~keiDvisvps~~~l~vHEpk~kVDLtkYlEn~~F~FDyaFDe~~sNe~VYrfTa~PlV~~I 287 (676)
T KOG0246|consen 208 HRICVCVRKRPLNKKELTKKEIDVISVPSKNVLVVHEPKLKVDLTKYLENQKFRFDYAFDESASNELVYRFTAKPLVKTI 287 (676)
T ss_pred ceEEEEeecCCCCchhccccccceEeccccceEEeeccccccchHHHHhhceEEEeeecccccchHHHHHHhhhHHHHHH
Confidence 3699999999999866332 334455533 3333322 1234789999999999999999986 59999999
Q ss_pred hcCcceeEEecccCCCCcceeecCCCC------CCCchhHHHHHHHHHHhcCC--CceEEEEEeEEEEecceeeecCCCC
Q 006826 160 LDGHNVCVLAYGQTGTGKTFTMDGTSD------QPGIVPRALEELFRQAALDN--SSSVTFSMSMLEVYMGSVRDLLAPK 231 (630)
Q Consensus 160 l~GyN~~IfaYGqTGSGKTyTM~G~~~------~~GIIpRal~~LF~~~~~~~--~~~~~v~vS~lEIYnE~I~DLL~~~ 231 (630)
|+|--+|+||||||||||||||.|+.. ..||..++.+|+|..+.... ...+.|+++|||||+.+|||||+.+
T Consensus 288 F~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvfDLL~~k 367 (676)
T KOG0246|consen 288 FEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVYDLLNDK 367 (676)
T ss_pred HhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchhhhhccc
Confidence 999999999999999999999988642 45999999999999876544 5678999999999999999999865
Q ss_pred CccchhhhhcccCeeEEeCCCCCEEEcCcEEEEcCChHHHHHHHHhhhhcccccccCCCCCCCCcEEEEEEEEEEecCCC
Q 006826 232 PVFKAYEAATRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDAL 311 (630)
Q Consensus 232 ~~~~~~~~~~~~~L~i~ed~~g~v~v~glt~v~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~I~v~~~~~~~ 311 (630)
. .|.+.+|.++.|.|.||++..|.+.+|++.+|+.|+..|+++.|..|..|||||+||+|.+....
T Consensus 368 ~-----------KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAvfQIilr~~~--- 433 (676)
T KOG0246|consen 368 K-----------KLRVLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAVFQIILRKHG--- 433 (676)
T ss_pred c-----------ceEEeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccceeEeeeeecCC---
Confidence 4 48999999999999999999999999999999999999999999999999999999999997654
Q ss_pred CCceEEeEeEEEecCCCccccccC-CCcchhhhhhhhhHhHHHHHHHHHHHHhCCCCccCCCCchhhhhhcccCC-Ccee
Q 006826 312 EAKTEVSKLWMVDLGGSERVLKTG-ATGQTLDEGRAINLSLSALADVIAALRRKRGHVPYRNSKLTQILRDSLGD-GSKV 389 (630)
Q Consensus 312 ~~~~~~skL~lVDLAGSEr~~kt~-a~g~rl~E~~~INkSLsaLg~VI~aL~~~~~hiPYRdSKLT~LLqdsLgG-nskT 389 (630)
.....||+.||||||+||...+. ++.++..||..|||||+||..||.||.+++.|+|||.||||++|+|||-| ||+|
T Consensus 434 -~~k~hGKfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~nk~H~PFR~SKLTqVLRDSFIGenSrT 512 (676)
T KOG0246|consen 434 -EFKLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKSHLPFRGSKLTQVLRDSFIGENSRT 512 (676)
T ss_pred -cceeEeEEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhHHHHHHHhhcCCCCce
Confidence 35678999999999999986654 67789999999999999999999999999999999999999999999988 9999
Q ss_pred eeEEecCCCCCcHHHhHHHHHHHHHhhcccc
Q 006826 390 LMLVHASPCEEDVGETICSLSFAKRARGIES 420 (630)
Q Consensus 390 ~mI~~VSP~~~~~~ETlsTLrFA~rar~I~~ 420 (630)
+||+||||...+.+.||+|||||.|+|....
T Consensus 513 cMIA~ISPg~~ScEhTLNTLRYAdRVKeLsv 543 (676)
T KOG0246|consen 513 CMIATISPGISSCEHTLNTLRYADRVKELSV 543 (676)
T ss_pred EEEEEeCCCcchhhhhHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999998753
No 27
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.9e-68 Score=600.66 Aligned_cols=357 Identities=35% Similarity=0.505 Sum_probs=302.3
Q ss_pred eCCCCccc-CCCccccEEecCCEEEEEeCCceEEEEeceeeCCCCChhhHHHh-hHHHHHHhhcCcceeEEecccCCCCc
Q 006826 100 VRSFLVTG-RRVIHEPVLTELEKVVVRSGGSKKEFGFDKVFNQAASQEDVFVE-VEPILRSALDGHNVCVLAYGQTGTGK 177 (630)
Q Consensus 100 vRP~~~~e-~~~~~~~v~~~~~~v~v~~~~~~~~F~FD~VF~~~atQ~eVf~~-v~plV~svl~GyN~~IfaYGqTGSGK 177 (630)
|||+...+ ..++..|+.+.+....|.- ++...|+||+||+....|.++|+. |.|+++.+++|||++++|||||||||
T Consensus 1 vRpl~~~e~~~g~~~c~~~~~~~pqv~i-g~~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvlaygQtgsgk 79 (913)
T KOG0244|consen 1 VRPLKQMEEEQGCRRCTEVSPRTPQVAI-GKDASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATVLAYGQTGSGK 79 (913)
T ss_pred CCCccchHHHhcchhhcccCCCCCceee-cCCcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcceeeeecccCCCc
Confidence 68887744 4566667776666555543 345789999999999999999987 49999999999999999999999999
Q ss_pred ceeecCC----CCCCCchhHHHHHHHHHHhcCCCceEEEEEeEEEEecceeeecCCCCCccchhhhhcccCeeEEeCCCC
Q 006826 178 TFTMDGT----SDQPGIVPRALEELFRQAALDNSSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAATRCNLNIQTDAKG 253 (630)
Q Consensus 178 TyTM~G~----~~~~GIIpRal~~LF~~~~~~~~~~~~v~vS~lEIYnE~I~DLL~~~~~~~~~~~~~~~~L~i~ed~~g 253 (630)
||||.+. .++.|+|||+++++|..+..-....|.|.|||+|||+|.|+|||.|... +.++.+++ ++|
T Consensus 80 Tytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~~~~f~i~vs~vely~e~v~dl~~~~~~--------~~~i~~~e-~~g 150 (913)
T KOG0244|consen 80 TYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTESFVFRITVSFVELYNEEVLDLLKPSRL--------KANIKLRE-PKG 150 (913)
T ss_pred eeecccccccccccCCcCcchHHHHHHHHHhhhccceeeeeeeeeccchhhhhhcChhhh--------hhceeccc-cCC
Confidence 9999876 3456999999999999887666688999999999999999999985432 22467777 889
Q ss_pred CEEEcCcEEEEcCChHHHHHHHHhhhhcccccccCCCCCCCCcEEEEEEEEEEecCCCCCceEEeEeEEEecCCCccccc
Q 006826 254 TVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDALEAKTEVSKLWMVDLGGSERVLK 333 (630)
Q Consensus 254 ~v~v~glt~v~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~I~v~~~~~~~~~~~~~skL~lVDLAGSEr~~k 333 (630)
++.+.|++++.|.+..++...+..|.-.|++++|+||..|||||+||+|.+.+...........+||+|||||||||.++
T Consensus 151 ~it~~glte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~~~s~~~sKlhlVDLAGSER~kk 230 (913)
T KOG0244|consen 151 EITIRGLTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLSKRSSFCSKLHLVDLAGSERVKK 230 (913)
T ss_pred ceEEEeehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhhccchhhhhhheeeccccccccc
Confidence 99999999999999999999999999999999999999999999999999987554443555679999999999999999
Q ss_pred cCCCcchhhhhhhhhHhHHHHHHHHHHHHhCCC--CccCCCCchhhhhhcccCCCceeeeEEecCCCCCcHHHhHHHHHH
Q 006826 334 TGATGQTLDEGRAINLSLSALADVIAALRRKRG--HVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVGETICSLSF 411 (630)
Q Consensus 334 t~a~g~rl~E~~~INkSLsaLg~VI~aL~~~~~--hiPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~ETlsTLrF 411 (630)
++++|++++|+.+||.+|++||+||+||..... ||||||||||+||||+||||++|+||+||||+..+.+||++||+|
T Consensus 231 T~a~gdrlKEgInIN~gLL~LgnVIsaLg~~kk~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpadsn~~EtlnTl~y 310 (913)
T KOG0244|consen 231 TKAEGDRLKEGININGGLLALGNVISALGEAKKGGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPADSNAQETLNTLRY 310 (913)
T ss_pred cccchhhhhhccCcchHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhcCCcceeeeeecChhhhhhhhHHHHHHH
Confidence 999999999999999999999999999987665 999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccccccccHHHHHH----HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Q 006826 412 AKRARGIESNRELSEDLKKR----REIRMAELEEDMREAE-----AECQNVRNQIKEVESLLSE 466 (630)
Q Consensus 412 A~rar~I~~~~~~~~~~~~~----~~~~i~~L~~el~~l~-----~e~~~l~~qi~~~e~~l~e 466 (630)
|.||++|+|.|.+|.|+... ...+++.|+.++.... +++..+..++..+++.+.+
T Consensus 311 a~Rak~iknk~vvN~d~~~~~~~~lK~ql~~l~~ell~~~~~~~~~ei~sl~~e~~~l~~~~d~ 374 (913)
T KOG0244|consen 311 ADRAKQIKNKPVVNQDPKSFEMLKLKAQLEPLQVELLSKAGDELDAEINSLPFENVTLEETLDA 374 (913)
T ss_pred hhHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHhhccccchhHHhhhhhhhhhhhhhHHH
Confidence 99999999999999865432 1234444444444332 4555555555554444333
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2e-63 Score=560.27 Aligned_cols=318 Identities=39% Similarity=0.595 Sum_probs=282.9
Q ss_pred CCCEEEEEEeCCCCcccCCCccccEEecC-CEEEEEeCCceEEEEeceeeCCCCChhhHHHhh-HHHHHHhhcCcceeEE
Q 006826 91 KGCIRVFCRVRSFLVTGRRVIHEPVLTEL-EKVVVRSGGSKKEFGFDKVFNQAASQEDVFVEV-EPILRSALDGHNVCVL 168 (630)
Q Consensus 91 kG~IrV~~RvRP~~~~e~~~~~~~v~~~~-~~v~v~~~~~~~~F~FD~VF~~~atQ~eVf~~v-~plV~svl~GyN~~If 168 (630)
-.+++++++..|-...+ ....... ..+.+. ......|.||+||++.++|++||+.. .|+++++++|||+|||
T Consensus 21 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~N~Tvf 94 (568)
T COG5059 21 VSDIKSTIRIIPGELGE-----RLINTSKKSHVSLE-KSKEGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTVF 94 (568)
T ss_pred ecCceEEEeecCCCcch-----heeecccccccccc-cccceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHhcccceEE
Confidence 36778888888854432 1111111 111111 11157899999999999999999885 9999999999999999
Q ss_pred ecccCCCCcceeecCCCCCCCchhHHHHHHHHHHhcCC-CceEEEEEeEEEEecceeeecCCCCCccchhhhhcccCeeE
Q 006826 169 AYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQAALDN-SSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAATRCNLNI 247 (630)
Q Consensus 169 aYGqTGSGKTyTM~G~~~~~GIIpRal~~LF~~~~~~~-~~~~~v~vS~lEIYnE~I~DLL~~~~~~~~~~~~~~~~L~i 247 (630)
|||||||||||||.|..+++||||+++.+||+.+.... +..|.|.+||+|||||+++|||.+... .+.+
T Consensus 95 ayGqTgsgKtyt~~G~~~~~Gii~~~l~~lf~~l~~~~~~~~~~v~is~lEiYnEk~~DLl~~~~~----------~~~~ 164 (568)
T COG5059 95 AYGQTGSGKTYTMSGTEEEPGIIPLSLKELFSKLEDLSMTKDFAVSISYLEIYNEKIYDLLSPNEE----------SLNI 164 (568)
T ss_pred EEcccCCCceeEeecCccccchHHHHHHHHHHHHHhcccCcceeeEeehhHHHhhHHHhhccCccc----------cccc
Confidence 99999999999999999999999999999999876543 567999999999999999999998765 2678
Q ss_pred EeCCCCCEEEcCcEEEEcCChHHHHHHHHhhhhcccccccCCCCCCCCcEEEEEEEEEEecCCCCCceEEeEeEEEecCC
Q 006826 248 QTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDALEAKTEVSKLWMVDLGG 327 (630)
Q Consensus 248 ~ed~~g~v~v~glt~v~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~I~v~~~~~~~~~~~~~skL~lVDLAG 327 (630)
+++..++++|.|++++.+.+.+|++.+|..|..+|.++.|.+|..|||||++|++.+.+.+... +....++|+||||||
T Consensus 165 ~~~~~~~v~v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n~~ssRshsi~~i~~~~~~~~~-~~~~~~~l~lvDLag 243 (568)
T COG5059 165 REDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVS-GTSETSKLSLVDLAG 243 (568)
T ss_pred cccCCCceEeecceEEecCChHHHHHHHHHhhhhcccccchhccccccceEEEEEEEEEeccCc-cceecceEEEEeecc
Confidence 8999999999999999999999999999999999999999999999999999999999887655 444458999999999
Q ss_pred CccccccCCCcchhhhhhhhhHhHHHHHHHHHHHHh--CCCCccCCCCchhhhhhcccCCCceeeeEEecCCCCCcHHHh
Q 006826 328 SERVLKTGATGQTLDEGRAINLSLSALADVIAALRR--KRGHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVGET 405 (630)
Q Consensus 328 SEr~~kt~a~g~rl~E~~~INkSLsaLg~VI~aL~~--~~~hiPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~ET 405 (630)
||++..++..+.+++|+..||+||.+||+||.+|.. +..|||||+||||||||++|||+++|.|||||+|...+++||
T Consensus 244 SE~~~~~~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~~~~~~~ipyReskLTRlLq~sLgG~~~~~~i~~Isp~~~~~~et 323 (568)
T COG5059 244 SERAARTGNRGTRLKEGASINKSLLTLGNVINALGDKKKSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEET 323 (568)
T ss_pred ccccchhhcccchhhhhhhhHhhHHHHHHHHHHHhccccCCccchhhhHHHHHHHHhcCCCccEEEEEEEcCCCCchHHH
Confidence 999999999999999999999999999999999997 789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccccccc
Q 006826 406 ICSLSFAKRARGIESNRELS 425 (630)
Q Consensus 406 lsTLrFA~rar~I~~~~~~~ 425 (630)
.+||+||.||+.|++.+..+
T Consensus 324 ~~tL~~a~rak~I~~~~~~~ 343 (568)
T COG5059 324 INTLKFASRAKSIKNKIQVN 343 (568)
T ss_pred HHHHHHHHHHhhcCCccccc
Confidence 99999999999999988877
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=7.1e-52 Score=406.21 Aligned_cols=177 Identities=49% Similarity=0.752 Sum_probs=168.5
Q ss_pred HHHhhHHHHHHhhcCcceeEEecccCCCCcceeecCCCCCCCchhHHHHHHHHHHhcCCCceEEEEEeEEEEecceeeec
Q 006826 148 VFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQAALDNSSSVTFSMSMLEVYMGSVRDL 227 (630)
Q Consensus 148 Vf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM~G~~~~~GIIpRal~~LF~~~~~~~~~~~~v~vS~lEIYnE~I~DL 227 (630)
||+.+.|+|+.+++|||+||||||||||||||||+|+.+++|||||++++
T Consensus 8 vf~~~~~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~~~~Giip~~~~~------------------------------ 57 (186)
T cd01363 8 VFRDVGPLLQSALDGYNVCIFAYGQTGSGKTYTMEGKREGAGIIPRTVTD------------------------------ 57 (186)
T ss_pred HHHHHHHHHHHHhCCcceeEEEECCCCCcceEecCCCCCCCCcchHHHHH------------------------------
Confidence 99998899999999999999999999999999999999999999999987
Q ss_pred CCCCCccchhhhhcccCeeEEeCCCCCEEEcCcEEEEcCChHHHHHHHHhhhhcccccccCCCCCCCCcEEEEEEEEEEe
Q 006826 228 LAPKPVFKAYEAATRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRH 307 (630)
Q Consensus 228 L~~~~~~~~~~~~~~~~L~i~ed~~g~v~v~glt~v~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~I~v~~~ 307 (630)
++.++..|.++|+++.|.+|+.|||||+||+|+|.+.
T Consensus 58 -------------------------------------------~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~ 94 (186)
T cd01363 58 -------------------------------------------VIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGK 94 (186)
T ss_pred -------------------------------------------HHHHHhhccccccccccCCCCccCcccEEEEEEEEEe
Confidence 7889999999999999999999999999999999876
Q ss_pred cCCC--CCceEEeEeEEEecCCCccccccCCCcchhhhhhhhhHhHHHHHHHHHHHHhCCCCccCCCCchhhhhhcccCC
Q 006826 308 GDAL--EAKTEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKRGHVPYRNSKLTQILRDSLGD 385 (630)
Q Consensus 308 ~~~~--~~~~~~skL~lVDLAGSEr~~kt~a~g~rl~E~~~INkSLsaLg~VI~aL~~~~~hiPYRdSKLT~LLqdsLgG 385 (630)
+... ......++|+||||||||+..++++.+++++|+..||+||++|++||.+|.+++.||||||||||+||+|+|||
T Consensus 95 ~~~~~~~~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~~~vpyr~SkLT~lL~~~L~g 174 (186)
T cd01363 95 NALASATEQPKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAERDSHVPYRESKLTRLLQDSLGG 174 (186)
T ss_pred ecCCCCccceeeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHHHhcCCCCCCCcccHHHHHHHHhcCC
Confidence 5443 24566799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeeEEecCC
Q 006826 386 GSKVLMLVHASP 397 (630)
Q Consensus 386 nskT~mI~~VSP 397 (630)
||+|+||+||||
T Consensus 175 ~~~t~~i~~vsP 186 (186)
T cd01363 175 NSRTLMVACISP 186 (186)
T ss_pred CCeEEEEEEeCc
Confidence 999999999998
No 30
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=99.07 E-value=5.8e-13 Score=151.42 Aligned_cols=287 Identities=24% Similarity=0.221 Sum_probs=190.8
Q ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhhhhhcCCCCEEEEEEeCCCCcccCCCccccEEe------cCCE
Q 006826 54 ELEQSIINLEGEIVELRL------KKRRLDEKRREALNKILDIKGCIRVFCRVRSFLVTGRRVIHEPVLT------ELEK 121 (630)
Q Consensus 54 ~l~~~~~~l~~~~~~l~~------~~~~~~~~Rr~l~n~~~elkG~IrV~~RvRP~~~~e~~~~~~~v~~------~~~~ 121 (630)
.+.+.+..|..-|..|.. ...++...+|.||+.+...+ +++|+|+|+|.......... ...+ -+..
T Consensus 262 ~iN~sLl~Lg~vI~~L~~~~~~~~ipyReskLTRlLq~sLgG~~-~~~~i~~Isp~~~~~~et~~-tL~~a~rak~I~~~ 339 (568)
T COG5059 262 SINKSLLTLGNVINALGDKKKSGHIPYRESKLTRLLQDSLGGNC-NTRVICTISPSSNSFEETIN-TLKFASRAKSIKNK 339 (568)
T ss_pred hhHhhHHHHHHHHHHHhccccCCccchhhhHHHHHHHHhcCCCc-cEEEEEEEcCCCCchHHHHH-HHHHHHHHhhcCCc
Confidence 566777778877777764 34577889999999999999 99999999999854221110 0000 0122
Q ss_pred EEEEe----CCceEEEEeceeeCCCCChhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceeecCCCCCCCchhHHHHH
Q 006826 122 VVVRS----GGSKKEFGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEE 197 (630)
Q Consensus 122 v~v~~----~~~~~~F~FD~VF~~~atQ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM~G~~~~~GIIpRal~~ 197 (630)
+.... ...-..|.||.+|.+...+..++.+...+++..++| +++||++++|+++||. ....++..-.+..
T Consensus 340 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 413 (568)
T COG5059 340 IQVNSSSDSSREIEEIKFDLSEDRSEIEILVFREQSQLSQSSLSG----IFAYMQSLKKETETLK--SRIDLIMKSIISG 413 (568)
T ss_pred ccccCcCcchHHHHHHHhhhhhhhhhhhhHHHHHHHhhhhhhhhh----HHHHHhhhhhhhhccc--chhhhhhhhhhhh
Confidence 22221 122367999999999999999999999999999999 9999999999999994 2334555556577
Q ss_pred HHHHHhcC--CCceEEEEEeEEEEecceeeecCCCCCccchhhhhcccCeeEEeCCCCCEEEcCcEEEEcCChHHHHHHH
Q 006826 198 LFRQAALD--NSSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAATRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWY 275 (630)
Q Consensus 198 LF~~~~~~--~~~~~~v~vS~lEIYnE~I~DLL~~~~~~~~~~~~~~~~L~i~ed~~g~v~v~glt~v~V~s~~e~~~ll 275 (630)
.|...... ..|.+...+-++++|-..+.++........... ......++.+. ...++.. .....+...+.
T Consensus 414 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~--~~~~~~~~~~~-----~~~~~~~-~~~~~~~~~~~ 485 (568)
T COG5059 414 TFERKKLLKEEGWKYKSTLQFLRIEIDRLLLLREEELSKKKTK--IHKLNKLRHDL-----SSLLSSI-PEETSDRVESE 485 (568)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHH--HHHHHHHHHHH-----HHhhhhc-chhhhhhhhhh
Confidence 77754332 267777777777777333333332211100000 00000011000 0011111 11111111222
Q ss_pred HhhhhcccccccCCCCCCCCcEEEEEEEEEEecCCCCCceEEeEeEEEecCCCccccccCCCcchhhhhhhhhHhHHHHH
Q 006826 276 NKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDALEAKTEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALA 355 (630)
Q Consensus 276 ~~g~~~R~~~~T~~N~~SSRSH~If~I~v~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~a~g~rl~E~~~INkSLsaLg 355 (630)
.+...+..+.+..|.+++++|++|+.......... .... ++.|||||+||. -+.+.|.++++..++|++|..+|
T Consensus 486 -~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~-~~~~---~n~~~~~~~e~~-~s~~~~~~l~~~~~~~k~l~~~~ 559 (568)
T COG5059 486 -KASKLRSSASTKLNLRSSRSHSKFRDHLNGSNSST-KELS---LNQVDLAGSERK-VSQSVGELLRETQSLNKSLSSLG 559 (568)
T ss_pred -hhccchhhcccchhhhhcccchhhhhcccchhhhh-HHHH---hhhhhccccccc-hhhhhHHHHHhhHhhhhccccch
Confidence 56778899999999999999999988876544332 1111 799999999999 99999999999999999999999
Q ss_pred HHHHHHH
Q 006826 356 DVIAALR 362 (630)
Q Consensus 356 ~VI~aL~ 362 (630)
++|.++.
T Consensus 560 d~~~~~~ 566 (568)
T COG5059 560 DVIHALG 566 (568)
T ss_pred hhhhhcc
Confidence 9998864
No 31
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=95.69 E-value=0.007 Score=70.78 Aligned_cols=89 Identities=36% Similarity=0.649 Sum_probs=67.9
Q ss_pred eEEEEeceeeCCCCChhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceeecCCCCCCCchhHHHHHHHHHHhcCCCce
Q 006826 130 KKEFGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQAALDNSSS 209 (630)
Q Consensus 130 ~~~F~FD~VF~~~atQ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM~G~~~~~GIIpRal~~LF~~~~~~~~~~ 209 (630)
...+.|+.+......+..-+....+-+..++++++.. +|++|++.+.....|++-+....++..........
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (670)
T KOG0239|consen 25 KKRFELARVYSPSVGQPSLFSDVQPFVQSALEGLNVK--------AGLTYTMEGSNQPGGLLARLFKELIDLANSDKTSN 96 (670)
T ss_pred ccccCccccccccccccccCCccccchhhhhhhhhcc--------hhhhhhhhhhcCcchhHHHhhhhcccccccCCCch
Confidence 4678888888776666666666667777888888776 89999999998888988888888776544433222
Q ss_pred EEEEEeEEEEecceeeecCCCCC
Q 006826 210 VTFSMSMLEVYMGSVRDLLAPKP 232 (630)
Q Consensus 210 ~~v~vS~lEIYnE~I~DLL~~~~ 232 (630)
.++.|++.+.|++..-.
T Consensus 97 ------~~~~~~~~~~~~~~~~q 113 (670)
T KOG0239|consen 97 ------VVEAYNERLRDLLSELQ 113 (670)
T ss_pred ------hHHHHHHHHhhhccccc
Confidence 68889999999997544
No 32
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=94.71 E-value=0.19 Score=54.70 Aligned_cols=18 Identities=50% Similarity=0.691 Sum_probs=15.2
Q ss_pred ceeEEecccCCCCcceee
Q 006826 164 NVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 164 N~~IfaYGqTGSGKTyTM 181 (630)
...|+-||++|+|||+++
T Consensus 156 p~gvLL~GppGtGKT~la 173 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLA 173 (364)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 345889999999999876
No 33
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=94.15 E-value=0.073 Score=60.03 Aligned_cols=91 Identities=24% Similarity=0.390 Sum_probs=58.6
Q ss_pred EEEEeceeeCCCCChhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceeecCC---CCCCCchh----HHHHHHHHHHh
Q 006826 131 KEFGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMDGT---SDQPGIVP----RALEELFRQAA 203 (630)
Q Consensus 131 ~~F~FD~VF~~~atQ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM~G~---~~~~GIIp----Ral~~LF~~~~ 203 (630)
..|....-|.|.-.|-. .|..||+.+-.|...-++ .|.|||||||||-.- -.-|-||- -.+.+||....
T Consensus 3 ~~F~l~s~f~PaGDQP~---AI~~Lv~gi~~g~~~QtL-LGvTGSGKTfT~AnVI~~~~rPtLV~AhNKTLAaQLy~Efk 78 (663)
T COG0556 3 KPFKLHSPFKPAGDQPE---AIAELVEGIENGLKHQTL-LGVTGSGKTFTMANVIAKVQRPTLVLAHNKTLAAQLYSEFK 78 (663)
T ss_pred CceEeccCCCCCCCcHH---HHHHHHHHHhcCceeeEE-eeeccCCchhHHHHHHHHhCCCeEEEecchhHHHHHHHHHH
Confidence 35777777888888853 356777777777655443 599999999999431 11122221 13445666543
Q ss_pred c-CCCceEEEEEeEEEEecceee
Q 006826 204 L-DNSSSVTFSMSMLEVYMGSVR 225 (630)
Q Consensus 204 ~-~~~~~~~v~vS~lEIYnE~I~ 225 (630)
. -+...+...|||+.-|.-.-|
T Consensus 79 ~fFP~NaVEYFVSYYDYYQPEAY 101 (663)
T COG0556 79 EFFPENAVEYFVSYYDYYQPEAY 101 (663)
T ss_pred HhCcCcceEEEeeeccccCcccc
Confidence 2 346677889999999976543
No 34
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=93.85 E-value=0.024 Score=57.45 Aligned_cols=49 Identities=24% Similarity=0.435 Sum_probs=32.9
Q ss_pred EEEeceeeCCCCChhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceeec
Q 006826 132 EFGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 132 ~F~FD~VF~~~atQ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM~ 182 (630)
.|+||.-+.. ..++..|..+..+.+.--..||. +|-||++|+||||-|.
T Consensus 4 ~~tFdnfv~g-~~N~~a~~~~~~ia~~~~~~~~~-l~l~G~~G~GKTHLL~ 52 (219)
T PF00308_consen 4 KYTFDNFVVG-ESNELAYAAAKAIAENPGERYNP-LFLYGPSGLGKTHLLQ 52 (219)
T ss_dssp T-SCCCS--T-TTTHHHHHHHHHHHHSTTTSSSE-EEEEESTTSSHHHHHH
T ss_pred CCccccCCcC-CcHHHHHHHHHHHHhcCCCCCCc-eEEECCCCCCHHHHHH
Confidence 5899986643 44677777666666662233555 6889999999999874
No 35
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=92.45 E-value=0.22 Score=55.11 Aligned_cols=18 Identities=50% Similarity=0.678 Sum_probs=15.5
Q ss_pred ceeEEecccCCCCcceee
Q 006826 164 NVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 164 N~~IfaYGqTGSGKTyTM 181 (630)
...|+-||++|+|||+..
T Consensus 179 pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456888999999999876
No 36
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.40 E-value=0.063 Score=56.97 Aligned_cols=30 Identities=33% Similarity=0.548 Sum_probs=27.4
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceeec
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM~ 182 (630)
.+++..+++--++.|+.-|+||||||.||-
T Consensus 114 P~i~~~~~~~~~GLILVTGpTGSGKSTTlA 143 (353)
T COG2805 114 PPIVRELAESPRGLILVTGPTGSGKSTTLA 143 (353)
T ss_pred CHHHHHHHhCCCceEEEeCCCCCcHHHHHH
Confidence 578888899999999999999999999983
No 37
>PRK06893 DNA replication initiation factor; Validated
Probab=91.64 E-value=0.13 Score=52.30 Aligned_cols=47 Identities=11% Similarity=0.256 Sum_probs=32.2
Q ss_pred EEEEeceeeCCCCChhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceeec
Q 006826 131 KEFGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 131 ~~F~FD~VF~~~atQ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM~ 182 (630)
..++||..+.... ..-+ ..+.+.+-+++|..++-||++|+||||.+.
T Consensus 11 ~~~~fd~f~~~~~-~~~~----~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ 57 (229)
T PRK06893 11 DDETLDNFYADNN-LLLL----DSLRKNFIDLQQPFFYIWGGKSSGKSHLLK 57 (229)
T ss_pred CcccccccccCCh-HHHH----HHHHHHhhccCCCeEEEECCCCCCHHHHHH
Confidence 4578998886542 2111 222333345788889999999999999884
No 38
>PRK06620 hypothetical protein; Validated
Probab=91.55 E-value=0.075 Score=53.72 Aligned_cols=49 Identities=16% Similarity=0.298 Sum_probs=34.6
Q ss_pred EEEEeceeeCCCCChhhHHHhhHHHHHHhhcCcc---eeEEecccCCCCcceeec
Q 006826 131 KEFGFDKVFNQAASQEDVFVEVEPILRSALDGHN---VCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 131 ~~F~FD~VF~~~atQ~eVf~~v~plV~svl~GyN---~~IfaYGqTGSGKTyTM~ 182 (630)
..|+||.-+...+. ...|..+..+.+. .|+| -.++-||++||||||.+.
T Consensus 11 ~~~tfd~Fvvg~~N-~~a~~~~~~~~~~--~~~~~~~~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 11 SKYHPDEFIVSSSN-DQAYNIIKNWQCG--FGVNPYKFTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred CCCCchhhEecccH-HHHHHHHHHHHHc--cccCCCcceEEEECCCCCCHHHHHH
Confidence 46889987655544 5577776555432 1444 358999999999999985
No 39
>PRK12377 putative replication protein; Provisional
Probab=91.12 E-value=0.14 Score=53.21 Aligned_cols=48 Identities=21% Similarity=0.279 Sum_probs=35.9
Q ss_pred EeceeeCCCCChhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceeec
Q 006826 134 GFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 134 ~FD~VF~~~atQ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM~ 182 (630)
+||.-......|..++..+..+++.+..+. ..++-||++|+||||.+.
T Consensus 72 tFdnf~~~~~~~~~a~~~a~~~a~~~~~~~-~~l~l~G~~GtGKThLa~ 119 (248)
T PRK12377 72 SFANYQVQNDGQRYALSQAKSIADELMTGC-TNFVFSGKPGTGKNHLAA 119 (248)
T ss_pred CcCCcccCChhHHHHHHHHHHHHHHHHhcC-CeEEEECCCCCCHHHHHH
Confidence 555544445567778887788888877654 467889999999999985
No 40
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.02 E-value=0.12 Score=58.15 Aligned_cols=32 Identities=31% Similarity=0.308 Sum_probs=28.3
Q ss_pred hHHHHHHhhcCcceeEEecccCCCCcceeecC
Q 006826 152 VEPILRSALDGHNVCVLAYGQTGTGKTFTMDG 183 (630)
Q Consensus 152 v~plV~svl~GyN~~IfaYGqTGSGKTyTM~G 183 (630)
....+..++..-++.|+.-|+||||||.||+.
T Consensus 246 ~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~ 277 (500)
T COG2804 246 QLARLLRLLNRPQGLILVTGPTGSGKTTTLYA 277 (500)
T ss_pred HHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence 35677888999999999999999999999964
No 41
>PRK08084 DNA replication initiation factor; Provisional
Probab=90.99 E-value=0.13 Score=52.47 Aligned_cols=47 Identities=13% Similarity=0.412 Sum_probs=32.5
Q ss_pred EEEEeceeeCCCCChhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceeec
Q 006826 131 KEFGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 131 ~~F~FD~VF~~~atQ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM~ 182 (630)
..|+||.-+.. .+...+..+..++. ......++-||++|+||||.+.
T Consensus 17 ~~~~fd~f~~~--~n~~a~~~l~~~~~---~~~~~~l~l~Gp~G~GKThLl~ 63 (235)
T PRK08084 17 DDETFASFYPG--DNDSLLAALQNALR---QEHSGYIYLWSREGAGRSHLLH 63 (235)
T ss_pred CcCCccccccC--ccHHHHHHHHHHHh---CCCCCeEEEECCCCCCHHHHHH
Confidence 45788865544 55667766655543 1222478999999999999984
No 42
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=90.75 E-value=1.8 Score=47.71 Aligned_cols=18 Identities=50% Similarity=0.691 Sum_probs=15.1
Q ss_pred ceeEEecccCCCCcceee
Q 006826 164 NVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 164 N~~IfaYGqTGSGKTyTM 181 (630)
...|+-||++|+|||+..
T Consensus 165 p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCceEEECCCCCChHHHH
Confidence 345889999999999765
No 43
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=90.46 E-value=0.12 Score=60.00 Aligned_cols=50 Identities=20% Similarity=0.367 Sum_probs=36.0
Q ss_pred EEEEeceeeCCCCChhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceeec
Q 006826 131 KEFGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 131 ~~F~FD~VF~~~atQ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM~ 182 (630)
..|+||..+-... +..+|..+..++...-.+||. ||-||.+|+||||.+.
T Consensus 283 ~~~TFDnFvvG~s-N~~A~aaa~avae~~~~~~Np-L~LyG~sGsGKTHLL~ 332 (617)
T PRK14086 283 PKYTFDTFVIGAS-NRFAHAAAVAVAEAPAKAYNP-LFIYGESGLGKTHLLH 332 (617)
T ss_pred CCCCHhhhcCCCc-cHHHHHHHHHHHhCccccCCc-EEEECCCCCCHHHHHH
Confidence 5689988664443 445665556666654456786 8999999999999985
No 44
>PRK08116 hypothetical protein; Validated
Probab=90.35 E-value=0.15 Score=53.43 Aligned_cols=50 Identities=22% Similarity=0.384 Sum_probs=36.3
Q ss_pred EEEeceeeCCCCChhhHHHhhHHHHHHhhc--CcceeEEecccCCCCcceeec
Q 006826 132 EFGFDKVFNQAASQEDVFVEVEPILRSALD--GHNVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 132 ~F~FD~VF~~~atQ~eVf~~v~plV~svl~--GyN~~IfaYGqTGSGKTyTM~ 182 (630)
.++||.-. .+..+...|..+...++.+.. +.+..++-||++|+||||.+.
T Consensus 81 ~~tFdnf~-~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~ 132 (268)
T PRK08116 81 NSTFENFL-FDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAA 132 (268)
T ss_pred hcchhccc-CChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHH
Confidence 45676543 455666677777777777654 345669999999999999884
No 45
>PRK07952 DNA replication protein DnaC; Validated
Probab=89.97 E-value=0.19 Score=51.96 Aligned_cols=49 Identities=14% Similarity=0.200 Sum_probs=34.2
Q ss_pred EEeceeeCCCCChhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceeec
Q 006826 133 FGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 133 F~FD~VF~~~atQ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM~ 182 (630)
.+||.-......|..++..+...++....|+. .++-||.+|+||||.+.
T Consensus 69 ~tFdnf~~~~~~q~~al~~a~~~~~~~~~~~~-~~~l~G~~GtGKThLa~ 117 (244)
T PRK07952 69 CSFENYRVECEGQMNALSKARQYVEEFDGNIA-SFIFSGKPGTGKNHLAA 117 (244)
T ss_pred CccccccCCCchHHHHHHHHHHHHHhhccCCc-eEEEECCCCCCHHHHHH
Confidence 35555433345566777777777776655533 68899999999999984
No 46
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=89.78 E-value=0.16 Score=56.81 Aligned_cols=49 Identities=16% Similarity=0.335 Sum_probs=34.9
Q ss_pred EEEEeceeeCCCCChhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceeec
Q 006826 131 KEFGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 131 ~~F~FD~VF~~~atQ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM~ 182 (630)
..|+||.-+-. ..+...|..+..+.+. -..||. +|-||++|+||||.|.
T Consensus 100 ~~~tFdnFv~g-~~n~~a~~~~~~~~~~-~~~~n~-l~lyG~~G~GKTHLl~ 148 (440)
T PRK14088 100 PDYTFENFVVG-PGNSFAYHAALEVAKN-PGRYNP-LFIYGGVGLGKTHLLQ 148 (440)
T ss_pred CCCcccccccC-CchHHHHHHHHHHHhC-cCCCCe-EEEEcCCCCcHHHHHH
Confidence 56899986643 4556677666555543 123675 9999999999999984
No 47
>PRK05642 DNA replication initiation factor; Validated
Probab=89.73 E-value=0.22 Score=50.97 Aligned_cols=49 Identities=16% Similarity=0.373 Sum_probs=30.2
Q ss_pred EEEEeceeeCCCCChhhHHHhhHHHHHHhhcCc-ceeEEecccCCCCcceeec
Q 006826 131 KEFGFDKVFNQAASQEDVFVEVEPILRSALDGH-NVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 131 ~~F~FD~VF~~~atQ~eVf~~v~plV~svl~Gy-N~~IfaYGqTGSGKTyTM~ 182 (630)
..|+||.-+... +..++..+..+.+.. .++ ...++-||++|+||||-+.
T Consensus 14 ~~~tfdnF~~~~--~~~a~~~~~~~~~~~-~~~~~~~l~l~G~~G~GKTHLl~ 63 (234)
T PRK05642 14 DDATFANYYPGA--NAAALGYVERLCEAD-AGWTESLIYLWGKDGVGRSHLLQ 63 (234)
T ss_pred CcccccccCcCC--hHHHHHHHHHHhhcc-ccCCCCeEEEECCCCCCHHHHHH
Confidence 458898877432 344444443333321 122 3467899999999999874
No 48
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=88.97 E-value=0.22 Score=56.00 Aligned_cols=49 Identities=27% Similarity=0.454 Sum_probs=33.1
Q ss_pred EEEeceeeCCCCChhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceeec
Q 006826 132 EFGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 132 ~F~FD~VF~~~atQ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM~ 182 (630)
.|+||.-+... +++..|..+..++..--..|| .+|-||.+|+||||.|.
T Consensus 111 ~~tFdnFv~g~-~n~~A~~aa~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~ 159 (450)
T PRK14087 111 ENTFENFVIGS-SNEQAFIAVQTVSKNPGISYN-PLFIYGESGMGKTHLLK 159 (450)
T ss_pred ccchhcccCCC-cHHHHHHHHHHHHhCcCcccC-ceEEECCCCCcHHHHHH
Confidence 58999866443 455677655555543212245 47899999999999984
No 49
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=88.95 E-value=0.22 Score=54.83 Aligned_cols=50 Identities=20% Similarity=0.312 Sum_probs=33.4
Q ss_pred EEEEeceeeCCCCChhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceeec
Q 006826 131 KEFGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 131 ~~F~FD~VF~~~atQ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM~ 182 (630)
..|+||.-.. +..+...|..+..+.+.--..|| .++-||++|+||||.+.
T Consensus 105 ~~~tfd~fi~-g~~n~~a~~~~~~~~~~~~~~~n-~l~l~G~~G~GKThL~~ 154 (405)
T TIGR00362 105 PKYTFDNFVV-GKSNRLAHAAALAVAENPGKAYN-PLFIYGGVGLGKTHLLH 154 (405)
T ss_pred CCCccccccc-CCcHHHHHHHHHHHHhCcCccCC-eEEEECCCCCcHHHHHH
Confidence 5789988442 34556677666655554222244 47889999999999883
No 50
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=88.85 E-value=0.56 Score=51.39 Aligned_cols=33 Identities=39% Similarity=0.649 Sum_probs=24.5
Q ss_pred HHhhHHHHHHhhcCccee-EEecccCCCCcceee
Q 006826 149 FVEVEPILRSALDGHNVC-VLAYGQTGTGKTFTM 181 (630)
Q Consensus 149 f~~v~plV~svl~GyN~~-IfaYGqTGSGKTyTM 181 (630)
++.+..++..++.|.-.. ++.||.||+|||.|+
T Consensus 26 i~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 26 INQLASFLAPALRGERPSNIIIYGPTGTGKTATV 59 (366)
T ss_pred HHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHH
Confidence 334555567777665444 999999999999886
No 51
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=88.40 E-value=0.32 Score=48.47 Aligned_cols=46 Identities=13% Similarity=0.419 Sum_probs=32.8
Q ss_pred EEEEeceeeCCCCChhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 131 KEFGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 131 ~~F~FD~VF~~~atQ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
..|+||....+ .+..++..+..++. .+....|+-||++|+||||.+
T Consensus 10 ~~~~~~~~~~~--~~~~~~~~l~~~~~---~~~~~~lll~G~~G~GKT~la 55 (226)
T TIGR03420 10 DDPTFDNFYAG--GNAELLAALRQLAA---GKGDRFLYLWGESGSGKSHLL 55 (226)
T ss_pred CchhhcCcCcC--CcHHHHHHHHHHHh---cCCCCeEEEECCCCCCHHHHH
Confidence 45778776632 45566666655543 456778999999999999987
No 52
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=88.37 E-value=0.34 Score=48.76 Aligned_cols=47 Identities=11% Similarity=0.293 Sum_probs=31.5
Q ss_pred EEEEeceeeCCCCChhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 131 KEFGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 131 ~~F~FD~VF~~~atQ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
..|+||..+... .+.++..+..++.. .+.+..++-||++|+||||.+
T Consensus 13 ~~~~~d~f~~~~--~~~~~~~l~~~~~~--~~~~~~~~l~G~~G~GKT~La 59 (227)
T PRK08903 13 PPPTFDNFVAGE--NAELVARLRELAAG--PVADRFFYLWGEAGSGRSHLL 59 (227)
T ss_pred ChhhhcccccCC--cHHHHHHHHHHHhc--cCCCCeEEEECCCCCCHHHHH
Confidence 458899887322 23455545555442 234567899999999999987
No 53
>PRK06835 DNA replication protein DnaC; Validated
Probab=88.21 E-value=0.21 Score=53.90 Aligned_cols=35 Identities=29% Similarity=0.490 Sum_probs=26.2
Q ss_pred hHHHhhHHHHHHhhcCcceeEEecccCCCCcceeec
Q 006826 147 DVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 147 eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM~ 182 (630)
.++..+...++.+-.+. -.++-||++|+||||.+.
T Consensus 167 ~~~~~~~~f~~~f~~~~-~~Lll~G~~GtGKThLa~ 201 (329)
T PRK06835 167 KILEKCKNFIENFDKNN-ENLLFYGNTGTGKTFLSN 201 (329)
T ss_pred HHHHHHHHHHHHHhccC-CcEEEECCCCCcHHHHHH
Confidence 34554566777766554 569999999999999875
No 54
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=88.18 E-value=0.32 Score=52.34 Aligned_cols=49 Identities=33% Similarity=0.463 Sum_probs=33.6
Q ss_pred EEeceeeCCCCChhhHHHhhHHHHHHhhcC-cceeEEecccCCCCcceee
Q 006826 133 FGFDKVFNQAASQEDVFVEVEPILRSALDG-HNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 133 F~FD~VF~~~atQ~eVf~~v~plV~svl~G-yN~~IfaYGqTGSGKTyTM 181 (630)
|.-|++.+.-...++-++.+...+..++.| ...+++.||++|+|||+++
T Consensus 8 l~~~~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 8 LEPDYVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVT 57 (365)
T ss_pred CCCCCCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 444455444455566666666666666654 4568999999999999976
No 55
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=88.12 E-value=0.26 Score=55.14 Aligned_cols=50 Identities=20% Similarity=0.312 Sum_probs=34.0
Q ss_pred EEEEeceeeCCCCChhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceeec
Q 006826 131 KEFGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 131 ~~F~FD~VF~~~atQ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM~ 182 (630)
..|+||.-.. +..+...|..+..+.+.--..|| .++-||++|+||||.+.
T Consensus 117 ~~~tfd~fv~-g~~n~~a~~~~~~~~~~~~~~~~-~l~l~G~~G~GKThL~~ 166 (450)
T PRK00149 117 PKYTFDNFVV-GKSNRLAHAAALAVAENPGKAYN-PLFIYGGVGLGKTHLLH 166 (450)
T ss_pred CCCccccccc-CCCcHHHHHHHHHHHhCcCccCC-eEEEECCCCCCHHHHHH
Confidence 5688888443 23556677666666554323455 47889999999999984
No 56
>PRK09087 hypothetical protein; Validated
Probab=87.41 E-value=0.29 Score=49.87 Aligned_cols=47 Identities=19% Similarity=0.266 Sum_probs=31.8
Q ss_pred EEEEeceeeCCCCChhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceeec
Q 006826 131 KEFGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 131 ~~F~FD~VF~~~atQ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM~ 182 (630)
..|+||.-+...+. ..+|..+..+ ..-.+..++-||++||||||.+.
T Consensus 16 ~~~~~~~Fi~~~~N-~~a~~~l~~~----~~~~~~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 16 PAYGRDDLLVTESN-RAAVSLVDHW----PNWPSPVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CCCChhceeecCch-HHHHHHHHhc----ccCCCCeEEEECCCCCCHHHHHH
Confidence 45789887754444 4477644322 22235568999999999999984
No 57
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=87.31 E-value=0.3 Score=46.21 Aligned_cols=30 Identities=30% Similarity=0.299 Sum_probs=19.8
Q ss_pred HHHHHhhcC-cceeEEecccCCCCcceeecC
Q 006826 154 PILRSALDG-HNVCVLAYGQTGTGKTFTMDG 183 (630)
Q Consensus 154 plV~svl~G-yN~~IfaYGqTGSGKTyTM~G 183 (630)
.+++.+-.+ .+.-++..++||||||++|..
T Consensus 14 ~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~ 44 (184)
T PF04851_consen 14 RIINSLENKKEERRVLLNAPTGSGKTIIALA 44 (184)
T ss_dssp HHHHHHHTTSGCSEEEEEESTTSSHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEECCCCCcChhhhh
Confidence 334443333 345566677999999999963
No 58
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=87.08 E-value=3.6 Score=46.26 Aligned_cols=16 Identities=50% Similarity=0.806 Sum_probs=14.0
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
.++-||++|+|||.+.
T Consensus 219 gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 219 GVILYGPPGTGKTLLA 234 (438)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778999999999876
No 59
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=87.02 E-value=0.43 Score=51.97 Aligned_cols=49 Identities=39% Similarity=0.491 Sum_probs=31.8
Q ss_pred EEeceeeCCCCChhhHHHhhHHHHHHhhcC-cceeEEecccCCCCcceee
Q 006826 133 FGFDKVFNQAASQEDVFVEVEPILRSALDG-HNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 133 F~FD~VF~~~atQ~eVf~~v~plV~svl~G-yN~~IfaYGqTGSGKTyTM 181 (630)
|..|.+.+.-..-++-++.+...+..++.| ....++-||++|+|||+++
T Consensus 23 l~~~~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 23 LEPDYVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTV 72 (394)
T ss_pred CCCCCcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHH
Confidence 344444443344455555665666666643 4566899999999999976
No 60
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=86.64 E-value=0.33 Score=53.79 Aligned_cols=50 Identities=20% Similarity=0.369 Sum_probs=30.8
Q ss_pred EEEEeceeeCCCCChhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceeec
Q 006826 131 KEFGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 131 ~~F~FD~VF~~~atQ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM~ 182 (630)
..|+||.-.... ++.-.|..+..+-+..-.-|| -||-||.+|+||||-|.
T Consensus 82 ~~ytFdnFv~g~-~N~~A~aa~~~va~~~g~~~n-plfi~G~~GlGKTHLl~ 131 (408)
T COG0593 82 PKYTFDNFVVGP-SNRLAYAAAKAVAENPGGAYN-PLFIYGGVGLGKTHLLQ 131 (408)
T ss_pred CCCchhheeeCC-chHHHHHHHHHHHhccCCcCC-cEEEECCCCCCHHHHHH
Confidence 569999855443 444444433322222212255 47889999999999994
No 61
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=85.17 E-value=0.58 Score=48.66 Aligned_cols=41 Identities=20% Similarity=0.293 Sum_probs=31.3
Q ss_pred CCCCChhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceeec
Q 006826 140 NQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 140 ~~~atQ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM~ 182 (630)
.....+..+|..+..+++.+-.|.| ++-||++|+||||-..
T Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~~~n--l~l~G~~G~GKThLa~ 123 (254)
T COG1484 83 FQPGIDKKALEDLASLVEFFERGEN--LVLLGPPGVGKTHLAI 123 (254)
T ss_pred CCcchhHHHHHHHHHHHHHhccCCc--EEEECCCCCcHHHHHH
Confidence 3444678888888888877775554 4779999999999874
No 62
>PRK06526 transposase; Provisional
Probab=85.03 E-value=0.34 Score=50.41 Aligned_cols=21 Identities=43% Similarity=0.552 Sum_probs=17.2
Q ss_pred cCcceeEEecccCCCCcceeecC
Q 006826 161 DGHNVCVLAYGQTGTGKTFTMDG 183 (630)
Q Consensus 161 ~GyN~~IfaYGqTGSGKTyTM~G 183 (630)
.+.| |+.||++|+||||.+.+
T Consensus 97 ~~~n--lll~Gp~GtGKThLa~a 117 (254)
T PRK06526 97 GKEN--VVFLGPPGTGKTHLAIG 117 (254)
T ss_pred cCce--EEEEeCCCCchHHHHHH
Confidence 3455 78999999999999864
No 63
>PRK08939 primosomal protein DnaI; Reviewed
Probab=84.92 E-value=0.41 Score=51.14 Aligned_cols=51 Identities=16% Similarity=0.270 Sum_probs=33.3
Q ss_pred EEeceeeCCCCChhhHHHhhHHHHHHhhcC-cceeEEecccCCCCcceeecC
Q 006826 133 FGFDKVFNQAASQEDVFVEVEPILRSALDG-HNVCVLAYGQTGTGKTFTMDG 183 (630)
Q Consensus 133 F~FD~VF~~~atQ~eVf~~v~plV~svl~G-yN~~IfaYGqTGSGKTyTM~G 183 (630)
.+||.+-.....+..++..+...++....| ..-.++-||++|+||||.+.+
T Consensus 124 atf~~~~~~~~~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~A 175 (306)
T PRK08939 124 ASLADIDLDDRDRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAA 175 (306)
T ss_pred CcHHHhcCCChHHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHH
Confidence 456554333335556666556666665543 234689999999999999853
No 64
>PRK08727 hypothetical protein; Validated
Probab=83.90 E-value=0.65 Score=47.39 Aligned_cols=45 Identities=20% Similarity=0.341 Sum_probs=27.0
Q ss_pred EEEEeceeeCCCCChhhHHHhhHHHHHHhhcCc-ceeEEecccCCCCcceeec
Q 006826 131 KEFGFDKVFNQAASQEDVFVEVEPILRSALDGH-NVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 131 ~~F~FD~VF~~~atQ~eVf~~v~plV~svl~Gy-N~~IfaYGqTGSGKTyTM~ 182 (630)
..|+||.-+...+ + ....+..+ ..|+ .-.|+-||++|+||||.+.
T Consensus 14 ~~~~f~~f~~~~~-n--~~~~~~~~----~~~~~~~~l~l~G~~G~GKThL~~ 59 (233)
T PRK08727 14 SDQRFDSYIAAPD-G--LLAQLQAL----AAGQSSDWLYLSGPAGTGKTHLAL 59 (233)
T ss_pred CcCChhhccCCcH-H--HHHHHHHH----HhccCCCeEEEECCCCCCHHHHHH
Confidence 3568887553333 2 22222222 2233 2359999999999999884
No 65
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=83.62 E-value=0.7 Score=41.13 Aligned_cols=25 Identities=32% Similarity=0.302 Sum_probs=17.9
Q ss_pred HHhhcCcceeEEecccCCCCcceee
Q 006826 157 RSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 157 ~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
..+.......++.+|++|+|||+.+
T Consensus 12 ~~~~~~~~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 12 EALELPPPKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred HHHhCCCCCeEEEECCCCCCHHHHH
Confidence 3333334456888999999999876
No 66
>PRK08181 transposase; Validated
Probab=83.19 E-value=0.64 Score=48.86 Aligned_cols=21 Identities=33% Similarity=0.654 Sum_probs=17.5
Q ss_pred cCcceeEEecccCCCCcceeecC
Q 006826 161 DGHNVCVLAYGQTGTGKTFTMDG 183 (630)
Q Consensus 161 ~GyN~~IfaYGqTGSGKTyTM~G 183 (630)
.|.| |+-||++|+||||.+.+
T Consensus 105 ~~~n--lll~Gp~GtGKTHLa~A 125 (269)
T PRK08181 105 KGAN--LLLFGPPGGGKSHLAAA 125 (269)
T ss_pred cCce--EEEEecCCCcHHHHHHH
Confidence 4555 79999999999999854
No 67
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=83.12 E-value=5.3 Score=45.82 Aligned_cols=16 Identities=50% Similarity=0.783 Sum_probs=13.8
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
.|+-||++|+|||++.
T Consensus 218 GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 218 GVLLYGPPGCGKTLIA 233 (512)
T ss_pred ceEEECCCCCcHHHHH
Confidence 4888999999999864
No 68
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=82.53 E-value=0.45 Score=41.92 Aligned_cols=17 Identities=41% Similarity=0.407 Sum_probs=14.7
Q ss_pred EEecccCCCCcceeecC
Q 006826 167 VLAYGQTGTGKTFTMDG 183 (630)
Q Consensus 167 IfaYGqTGSGKTyTM~G 183 (630)
++.+|+||+|||+++..
T Consensus 3 ~~i~~~~G~GKT~~~~~ 19 (144)
T cd00046 3 VLLAAPTGSGKTLAALL 19 (144)
T ss_pred EEEECCCCCchhHHHHH
Confidence 57889999999999854
No 69
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=81.88 E-value=0.67 Score=47.93 Aligned_cols=71 Identities=30% Similarity=0.381 Sum_probs=37.0
Q ss_pred CCEEEEEEeCCCCcccCCCccccEEecCCEEEEEeCCceEEEEeceeeCCCCChhhHHHhhHHHHHHhhcCcceeEEecc
Q 006826 92 GCIRVFCRVRSFLVTGRRVIHEPVLTELEKVVVRSGGSKKEFGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYG 171 (630)
Q Consensus 92 G~IrV~~RvRP~~~~e~~~~~~~v~~~~~~v~v~~~~~~~~F~FD~VF~~~atQ~eVf~~v~plV~svl~GyN~~IfaYG 171 (630)
+++||.|-.-|.... ..+.++.. ....|+++..... ..+-..+..++..++.+.. .|+..|
T Consensus 74 ~~~R~~i~~~p~~~~-------------~~~~iR~~-~~~~~sle~l~~~----~~~~~~~~~~l~~~v~~~~-~ili~G 134 (270)
T PF00437_consen 74 DGIRVRITTPPVSGG-------------PTIVIRKF-SSKPFSLEDLGES----GSIPEEIAEFLRSAVRGRG-NILISG 134 (270)
T ss_dssp TSEEEEEEETTTSTS-------------EEEEEEEE-TSS--CHCCCCHT----HHCHHHHHHHHHHCHHTTE-EEEEEE
T ss_pred CCeEEEEEEcCCcCC-------------cccceecc-ccccccHhhccCc----hhhHHHHHHHHhhccccce-EEEEEC
Confidence 777777776665432 12444311 1234555443211 1111234555555555444 455569
Q ss_pred cCCCCcceee
Q 006826 172 QTGTGKTFTM 181 (630)
Q Consensus 172 qTGSGKTyTM 181 (630)
.||||||.+|
T Consensus 135 ~tGSGKTT~l 144 (270)
T PF00437_consen 135 PTGSGKTTLL 144 (270)
T ss_dssp STTSSHHHHH
T ss_pred CCccccchHH
Confidence 9999999998
No 70
>PF13245 AAA_19: Part of AAA domain
Probab=81.81 E-value=0.66 Score=39.31 Aligned_cols=26 Identities=38% Similarity=0.508 Sum_probs=17.9
Q ss_pred HHHhhcCcceeEEecccCCCCcceeec
Q 006826 156 LRSALDGHNVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 156 V~svl~GyN~~IfaYGqTGSGKTyTM~ 182 (630)
|..++. -+..+...|+.|||||+|+.
T Consensus 3 v~~al~-~~~~~vv~g~pGtGKT~~~~ 28 (76)
T PF13245_consen 3 VRRALA-GSPLFVVQGPPGTGKTTTLA 28 (76)
T ss_pred HHHHHh-hCCeEEEECCCCCCHHHHHH
Confidence 455555 33334458999999999973
No 71
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=81.73 E-value=0.77 Score=43.09 Aligned_cols=27 Identities=33% Similarity=0.532 Sum_probs=21.3
Q ss_pred HHHHHhhcCcceeEEecccCCCCcceeec
Q 006826 154 PILRSALDGHNVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 154 plV~svl~GyN~~IfaYGqTGSGKTyTM~ 182 (630)
.++..+..|.| ++..|+||||||+...
T Consensus 6 ~~~~~i~~~~~--~li~aptGsGKT~~~~ 32 (169)
T PF00270_consen 6 EAIEAIISGKN--VLISAPTGSGKTLAYI 32 (169)
T ss_dssp HHHHHHHTTSE--EEEECSTTSSHHHHHH
T ss_pred HHHHHHHcCCC--EEEECCCCCccHHHHH
Confidence 45566667777 6788999999999974
No 72
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=81.13 E-value=0.95 Score=47.57 Aligned_cols=34 Identities=32% Similarity=0.464 Sum_probs=28.6
Q ss_pred HHHhh--HHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 148 VFVEV--EPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 148 Vf~~v--~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
-|+++ .++++.+.--..+.|+..|.|||||+.||
T Consensus 109 t~eeL~LPevlk~la~~kRGLviiVGaTGSGKSTtm 144 (375)
T COG5008 109 TFEELKLPEVLKDLALAKRGLVIIVGATGSGKSTTM 144 (375)
T ss_pred cHHhcCCcHHHHHhhcccCceEEEECCCCCCchhhH
Confidence 35554 67888888788889999999999999998
No 73
>PRK10436 hypothetical protein; Provisional
Probab=81.00 E-value=0.68 Score=52.30 Aligned_cols=29 Identities=38% Similarity=0.502 Sum_probs=24.5
Q ss_pred HHHHHhhcCcceeEEecccCCCCcceeec
Q 006826 154 PILRSALDGHNVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 154 plV~svl~GyN~~IfaYGqTGSGKTyTM~ 182 (630)
..+..++..-++.|+..|+||||||.||.
T Consensus 208 ~~l~~~~~~~~GliLvtGpTGSGKTTtL~ 236 (462)
T PRK10436 208 AQFRQALQQPQGLILVTGPTGSGKTVTLY 236 (462)
T ss_pred HHHHHHHHhcCCeEEEECCCCCChHHHHH
Confidence 35666677788999999999999999985
No 74
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=80.78 E-value=1.1 Score=54.16 Aligned_cols=49 Identities=31% Similarity=0.353 Sum_probs=30.7
Q ss_pred EEeceeeCCCCChhhHHHhhHHHHHHhhcC--cceeEEecccCCCCcceee
Q 006826 133 FGFDKVFNQAASQEDVFVEVEPILRSALDG--HNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 133 F~FD~VF~~~atQ~eVf~~v~plV~svl~G--yN~~IfaYGqTGSGKTyTM 181 (630)
+..|+|=+.=..-++=+..+..++..++.| -+.+||.||++|+|||.|+
T Consensus 748 L~~DYVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATV 798 (1164)
T PTZ00112 748 MQLDVVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATV 798 (1164)
T ss_pred cCcccCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHH
Confidence 344444322223334444555666666654 4567889999999999997
No 75
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=80.59 E-value=1.6 Score=52.38 Aligned_cols=26 Identities=35% Similarity=0.459 Sum_probs=22.3
Q ss_pred HHHHHhhcCcceeEEecccCCCCcceee
Q 006826 154 PILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 154 plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
..+..+.+|+|+.|.| +||||||-+-
T Consensus 29 ~a~~~i~~G~nvLiiA--PTGsGKTeAA 54 (814)
T COG1201 29 YAIPEIHSGENVLIIA--PTGSGKTEAA 54 (814)
T ss_pred HHHHHHhCCCceEEEc--CCCCChHHHH
Confidence 4567778999999998 9999999874
No 76
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=80.43 E-value=0.74 Score=53.30 Aligned_cols=29 Identities=31% Similarity=0.455 Sum_probs=24.6
Q ss_pred HHHHHhhcCcceeEEecccCCCCcceeec
Q 006826 154 PILRSALDGHNVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 154 plV~svl~GyN~~IfaYGqTGSGKTyTM~ 182 (630)
..+..++..-++.|+..|+||||||.||.
T Consensus 306 ~~l~~~~~~~~Glilv~G~tGSGKTTtl~ 334 (564)
T TIGR02538 306 ALFLEAIHKPQGMVLVTGPTGSGKTVSLY 334 (564)
T ss_pred HHHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence 35667777788999999999999999984
No 77
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=80.36 E-value=0.82 Score=48.38 Aligned_cols=41 Identities=20% Similarity=0.353 Sum_probs=26.7
Q ss_pred EeceeeCCCCChhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 134 GFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 134 ~FD~VF~~~atQ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
.||.+.+ |+++.+.+..++. .|....++-||++|+|||+++
T Consensus 13 ~~~~~~g----~~~~~~~L~~~~~---~~~~~~lll~Gp~GtGKT~la 53 (337)
T PRK12402 13 LLEDILG----QDEVVERLSRAVD---SPNLPHLLVQGPPGSGKTAAV 53 (337)
T ss_pred cHHHhcC----CHHHHHHHHHHHh---CCCCceEEEECCCCCCHHHHH
Confidence 4666653 5555555444433 344335788999999999987
No 78
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=80.11 E-value=0.59 Score=44.59 Aligned_cols=33 Identities=27% Similarity=0.437 Sum_probs=18.3
Q ss_pred HHhhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 149 FVEVEPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 149 f~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
++.+..+++....|...+++.+|..|+|||+.+
T Consensus 9 ~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll 41 (185)
T PF13191_consen 9 IERLRDLLDAAQSGSPRNLLLTGESGSGKTSLL 41 (185)
T ss_dssp HHHHHHTTGGTSS-----EEE-B-TTSSHHHHH
T ss_pred HHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHH
Confidence 344445555344677788999999999999975
No 79
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=80.08 E-value=0.85 Score=51.85 Aligned_cols=29 Identities=28% Similarity=0.359 Sum_probs=24.2
Q ss_pred HHHHHhhcCcceeEEecccCCCCcceeec
Q 006826 154 PILRSALDGHNVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 154 plV~svl~GyN~~IfaYGqTGSGKTyTM~ 182 (630)
..+..++..-++.|+..|+||||||.||.
T Consensus 232 ~~l~~~~~~~~GlilitGptGSGKTTtL~ 260 (486)
T TIGR02533 232 SRFERLIRRPHGIILVTGPTGSGKTTTLY 260 (486)
T ss_pred HHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 35566777777889999999999999994
No 80
>PRK06921 hypothetical protein; Provisional
Probab=79.79 E-value=1.2 Score=46.65 Aligned_cols=36 Identities=19% Similarity=0.316 Sum_probs=24.4
Q ss_pred hHHHhhHHHHHHhhc---CcceeEEecccCCCCcceeec
Q 006826 147 DVFVEVEPILRSALD---GHNVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 147 eVf~~v~plV~svl~---GyN~~IfaYGqTGSGKTyTM~ 182 (630)
.++..+...++.+-+ +..-.++-||++|+||||.+.
T Consensus 97 ~~~~~~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~ 135 (266)
T PRK06921 97 DAYECAVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLT 135 (266)
T ss_pred HHHHHHHHHHHHHHHhcccCCCeEEEECCCCCcHHHHHH
Confidence 344444556665532 234568899999999999984
No 81
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=79.53 E-value=0.55 Score=42.35 Aligned_cols=18 Identities=28% Similarity=0.453 Sum_probs=13.2
Q ss_pred ceeEEecccCCCCcceee
Q 006826 164 NVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 164 N~~IfaYGqTGSGKTyTM 181 (630)
+.+++.+|++|+|||.++
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 457899999999999987
No 82
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=79.38 E-value=3 Score=43.14 Aligned_cols=54 Identities=20% Similarity=0.243 Sum_probs=35.0
Q ss_pred EcCChHHHHHHHHhhhhcccccccCCCCCCCCcEEEEEEEEEEecCCCCCceEEeEeEEEecCCCccc
Q 006826 264 QIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDALEAKTEVSKLWMVDLGGSERV 331 (630)
Q Consensus 264 ~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~I~v~~~~~~~~~~~~~skL~lVDLAGSEr~ 331 (630)
.+.+++++..++..+... .... + ..-|.-++.|.|...+. -.|+||||+|-.+.
T Consensus 85 ~~~~~~~v~~~i~~~~~~-~~~~---~--~~~s~~~i~l~i~~p~~--------~~ltLIDlPGl~~~ 138 (240)
T smart00053 85 KFTDFDEVRNEIEAETDR-VTGT---N--KGISPVPINLRVYSPHV--------LNLTLIDLPGITKV 138 (240)
T ss_pred ccCCHHHHHHHHHHHHHH-hcCC---C--CcccCcceEEEEeCCCC--------CceEEEeCCCcccc
Confidence 346788888888876542 1111 1 23355678888876643 36999999999643
No 83
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=79.38 E-value=0.65 Score=46.72 Aligned_cols=55 Identities=20% Similarity=0.335 Sum_probs=27.5
Q ss_pred HhHHHHHHHHHHHHhCCCCccCCCCchhhhhhcccCCCceeeeEEecCCCCCcHHH
Q 006826 349 LSLSALADVIAALRRKRGHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVGE 404 (630)
Q Consensus 349 kSLsaLg~VI~aL~~~~~hiPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~E 404 (630)
....++-+.+..|.......+--...+...|-++++.+.+ +.|+.+|--+.....
T Consensus 165 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~-i~IiDLs~~~~~~~~ 219 (229)
T PF01935_consen 165 STIRALLRRLERLFRRGSFFSSTPEDIIKLLLDYLNKPGK-IVIIDLSGVDEEVQD 219 (229)
T ss_pred HHHHHHHHHHHHHHhcccccccCcccHHHHhhhhcCCCCC-EEEEECCCCCHHHHH
Confidence 3445555555555544433323334555566666655544 445566654444333
No 84
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=79.31 E-value=1.2 Score=50.05 Aligned_cols=51 Identities=18% Similarity=0.302 Sum_probs=34.6
Q ss_pred eEEEEeceeeCCCCChhhHHHhhHHHHHHh--hcC--cceeEEecccCCCCcceeec
Q 006826 130 KKEFGFDKVFNQAASQEDVFVEVEPILRSA--LDG--HNVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 130 ~~~F~FD~VF~~~atQ~eVf~~v~plV~sv--l~G--yN~~IfaYGqTGSGKTyTM~ 182 (630)
...|+||.-+.. .++...|..+..+.+.. ..| ||. +|-||++|+||||.+.
T Consensus 105 ~~~~tFdnFv~g-~~N~~a~~~a~~~a~~~~~~~~~~~np-l~L~G~~G~GKTHLl~ 159 (445)
T PRK12422 105 DPLMTFANFLVT-PENDLPHRILQEFTKVSEQGKGFPFNP-IYLFGPEGSGKTHLMQ 159 (445)
T ss_pred CccccccceeeC-CcHHHHHHHHHHHHhccccccCCCCce-EEEEcCCCCCHHHHHH
Confidence 367999986653 35556666666665443 223 454 6789999999999984
No 85
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=78.94 E-value=0.83 Score=44.86 Aligned_cols=30 Identities=30% Similarity=0.478 Sum_probs=22.3
Q ss_pred hHHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 152 VEPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 152 v~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
+..+...+-.|.+.+++.||+.|+|||+.|
T Consensus 8 l~~l~~~l~~~~~~~~~l~G~rg~GKTsLl 37 (234)
T PF01637_consen 8 LEKLKELLESGPSQHILLYGPRGSGKTSLL 37 (234)
T ss_dssp HHHHHHCHHH--SSEEEEEESTTSSHHHHH
T ss_pred HHHHHHHHHhhcCcEEEEEcCCcCCHHHHH
Confidence 455555555677889999999999999977
No 86
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=78.69 E-value=0.72 Score=40.48 Aligned_cols=18 Identities=33% Similarity=0.477 Sum_probs=15.5
Q ss_pred eeEEecccCCCCcceeec
Q 006826 165 VCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM~ 182 (630)
..++-+|++|||||+++.
T Consensus 3 ~~~~l~G~~G~GKTtl~~ 20 (148)
T smart00382 3 EVILIVGPPGSGKTTLAR 20 (148)
T ss_pred CEEEEECCCCCcHHHHHH
Confidence 467889999999999884
No 87
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=78.51 E-value=1 Score=48.83 Aligned_cols=29 Identities=34% Similarity=0.572 Sum_probs=21.7
Q ss_pred HHHHHhhcCcceeEEecccCCCCcceeec
Q 006826 154 PILRSALDGHNVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 154 plV~svl~GyN~~IfaYGqTGSGKTyTM~ 182 (630)
+.+..++.--...|+..|+||||||.||.
T Consensus 112 ~~l~~~~~~~~g~ili~G~tGSGKTT~l~ 140 (343)
T TIGR01420 112 PVLRELAERPRGLILVTGPTGSGKSTTLA 140 (343)
T ss_pred HHHHHHHhhcCcEEEEECCCCCCHHHHHH
Confidence 34455554445778999999999999984
No 88
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=77.61 E-value=0.82 Score=45.43 Aligned_cols=18 Identities=44% Similarity=0.591 Sum_probs=15.9
Q ss_pred eeEEecccCCCCcceeec
Q 006826 165 VCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM~ 182 (630)
+.|+-.|+||||||.++.
T Consensus 2 GlilI~GptGSGKTTll~ 19 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLA 19 (198)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 578889999999999983
No 89
>PF12846 AAA_10: AAA-like domain
Probab=77.22 E-value=0.82 Score=46.92 Aligned_cols=19 Identities=42% Similarity=0.609 Sum_probs=16.0
Q ss_pred ceeEEecccCCCCcceeec
Q 006826 164 NVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 164 N~~IfaYGqTGSGKTyTM~ 182 (630)
|..++..|.||||||++|.
T Consensus 1 n~h~~i~G~tGsGKT~~~~ 19 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK 19 (304)
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4567889999999999884
No 90
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=76.92 E-value=1.2 Score=48.86 Aligned_cols=27 Identities=30% Similarity=0.354 Sum_probs=19.6
Q ss_pred HHHHhhcCcceeEEecccCCCCcceeec
Q 006826 155 ILRSALDGHNVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 155 lV~svl~GyN~~IfaYGqTGSGKTyTM~ 182 (630)
+++.++. .++.|+..|+||||||.||.
T Consensus 141 ~~~~l~~-~~GlilI~G~TGSGKTT~l~ 167 (372)
T TIGR02525 141 LFNSLLP-AAGLGLICGETGSGKSTLAA 167 (372)
T ss_pred HHHHHHh-cCCEEEEECCCCCCHHHHHH
Confidence 3444333 45578889999999999983
No 91
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=75.89 E-value=1.3 Score=48.34 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=18.1
Q ss_pred CcceeEEecccCCCCcceeec
Q 006826 162 GHNVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 162 GyN~~IfaYGqTGSGKTyTM~ 182 (630)
--...|+..|+||||||.||.
T Consensus 132 ~~~glilI~GpTGSGKTTtL~ 152 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLA 152 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHH
Confidence 346889999999999999983
No 92
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=75.88 E-value=1.3 Score=43.94 Aligned_cols=28 Identities=29% Similarity=0.409 Sum_probs=21.0
Q ss_pred HHHHHhhcCcceeEEecccCCCCcceee
Q 006826 154 PILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 154 plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
..|..++...+-.++..|..||||||+|
T Consensus 8 ~a~~~~l~~~~~~~~l~G~aGtGKT~~l 35 (196)
T PF13604_consen 8 EAVRAILTSGDRVSVLQGPAGTGKTTLL 35 (196)
T ss_dssp HHHHHHHHCTCSEEEEEESTTSTHHHHH
T ss_pred HHHHHHHhcCCeEEEEEECCCCCHHHHH
Confidence 4556666655555666899999999998
No 93
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=75.73 E-value=1.4 Score=46.02 Aligned_cols=30 Identities=37% Similarity=0.473 Sum_probs=22.9
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceeec
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM~ 182 (630)
...+..++..-...|+-.|+||||||.||.
T Consensus 69 ~~~l~~~~~~~~GlilisG~tGSGKTT~l~ 98 (264)
T cd01129 69 LEIFRKLLEKPHGIILVTGPTGSGKTTTLY 98 (264)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCcHHHHHH
Confidence 345566666556678888999999999984
No 94
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=75.48 E-value=1.7 Score=45.55 Aligned_cols=43 Identities=26% Similarity=0.269 Sum_probs=28.6
Q ss_pred eCCCCChhhHHHhhHHHHHHhhcC--cceeEEecccCCCCcceee
Q 006826 139 FNQAASQEDVFVEVEPILRSALDG--HNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 139 F~~~atQ~eVf~~v~plV~svl~G--yN~~IfaYGqTGSGKTyTM 181 (630)
|+.-..|+++.+.+..++.....+ ....++-||+.|+|||+..
T Consensus 3 ~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 3 LAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLA 47 (305)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 334456777777776666654432 2223677999999999876
No 95
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=74.77 E-value=1.8 Score=42.46 Aligned_cols=19 Identities=37% Similarity=0.543 Sum_probs=15.6
Q ss_pred eeEEecccCCCCcceeecC
Q 006826 165 VCVLAYGQTGTGKTFTMDG 183 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM~G 183 (630)
-.++-||++|+||||...+
T Consensus 48 ~~l~l~G~~G~GKThLa~a 66 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVA 66 (178)
T ss_dssp -EEEEEESTTSSHHHHHHH
T ss_pred eEEEEEhhHhHHHHHHHHH
Confidence 4588999999999998753
No 96
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=74.55 E-value=1.8 Score=46.59 Aligned_cols=28 Identities=32% Similarity=0.481 Sum_probs=20.5
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
..++..++.+. ..|+..|.||||||++|
T Consensus 138 ~~~L~~~v~~~-~~ilI~G~tGSGKTTll 165 (319)
T PRK13894 138 REAIIAAVRAH-RNILVIGGTGSGKTTLV 165 (319)
T ss_pred HHHHHHHHHcC-CeEEEECCCCCCHHHHH
Confidence 45666666654 45666699999999776
No 97
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=73.68 E-value=1.9 Score=46.01 Aligned_cols=28 Identities=36% Similarity=0.472 Sum_probs=21.2
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
..++..++.+ ...|+..|.||||||.+|
T Consensus 122 ~~~L~~~v~~-~~~ilI~G~tGSGKTTll 149 (299)
T TIGR02782 122 RDVLREAVLA-RKNILVVGGTGSGKTTLA 149 (299)
T ss_pred HHHHHHHHHc-CCeEEEECCCCCCHHHHH
Confidence 4556666654 456778899999999988
No 98
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=73.00 E-value=2.4 Score=43.31 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=17.2
Q ss_pred hcCcceeEEecccCCCCcceee
Q 006826 160 LDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 160 l~GyN~~IfaYGqTGSGKTyTM 181 (630)
+......++.+|+.|+|||+++
T Consensus 39 ~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 39 LSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred HhcCCCEEEEEcCCCCCHHHHH
Confidence 4444557888999999999876
No 99
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=72.91 E-value=2 Score=46.46 Aligned_cols=29 Identities=28% Similarity=0.328 Sum_probs=21.3
Q ss_pred hHHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 152 VEPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 152 v~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
+..++..++.+. ..|+..|.||||||.+|
T Consensus 149 ~~~~L~~~v~~~-~nili~G~tgSGKTTll 177 (332)
T PRK13900 149 IKEFLEHAVISK-KNIIISGGTSTGKTTFT 177 (332)
T ss_pred HHHHHHHHHHcC-CcEEEECCCCCCHHHHH
Confidence 456666666543 34677799999999988
No 100
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=72.28 E-value=1.6 Score=40.95 Aligned_cols=25 Identities=36% Similarity=0.501 Sum_probs=18.7
Q ss_pred EEecccCCCCcceeecCCCCCCCchhHHHHHHHHH
Q 006826 167 VLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQ 201 (630)
Q Consensus 167 IfaYGqTGSGKTyTM~G~~~~~GIIpRal~~LF~~ 201 (630)
+--.|+||+||||+- ..+++.||..
T Consensus 56 lSfHG~tGtGKn~v~----------~liA~~ly~~ 80 (127)
T PF06309_consen 56 LSFHGWTGTGKNFVS----------RLIAEHLYKS 80 (127)
T ss_pred EEeecCCCCcHHHHH----------HHHHHHHHhc
Confidence 445799999999975 3566777853
No 101
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=71.94 E-value=1.9 Score=42.27 Aligned_cols=28 Identities=39% Similarity=0.539 Sum_probs=17.9
Q ss_pred HHHHHhhcCcceeEEecccCCCCcceeec
Q 006826 154 PILRSALDGHNVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 154 plV~svl~GyN~~IfaYGqTGSGKTyTM~ 182 (630)
..|..++..-. ..+..|+.|||||+|+.
T Consensus 8 ~Ai~~~~~~~~-~~~i~GpPGTGKT~~l~ 35 (236)
T PF13086_consen 8 EAIQSALSSNG-ITLIQGPPGTGKTTTLA 35 (236)
T ss_dssp HHHHHHCTSSE--EEEE-STTSSHHHHHH
T ss_pred HHHHHHHcCCC-CEEEECCCCCChHHHHH
Confidence 34555554433 55668999999998874
No 102
>PF13479 AAA_24: AAA domain
Probab=71.71 E-value=1.5 Score=43.98 Aligned_cols=20 Identities=35% Similarity=0.605 Sum_probs=16.8
Q ss_pred ceeEEecccCCCCcceeecC
Q 006826 164 NVCVLAYGQTGTGKTFTMDG 183 (630)
Q Consensus 164 N~~IfaYGqTGSGKTyTM~G 183 (630)
+..++.||++|+|||++...
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~ 22 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAAS 22 (213)
T ss_pred ceEEEEECCCCCCHHHHHHh
Confidence 45789999999999998743
No 103
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=70.61 E-value=1.4 Score=44.00 Aligned_cols=16 Identities=44% Similarity=0.630 Sum_probs=14.4
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
.|+-.|+||+|||.|+
T Consensus 3 vi~lvGptGvGKTTt~ 18 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTI 18 (196)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCchHhHH
Confidence 4778899999999997
No 104
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=70.20 E-value=1.6 Score=39.00 Aligned_cols=15 Identities=47% Similarity=0.609 Sum_probs=13.3
Q ss_pred EEecccCCCCcceee
Q 006826 167 VLAYGQTGTGKTFTM 181 (630)
Q Consensus 167 IfaYGqTGSGKTyTM 181 (630)
|+-||+.|+|||+..
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 578999999999875
No 105
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=69.88 E-value=1.8 Score=38.56 Aligned_cols=16 Identities=25% Similarity=0.519 Sum_probs=14.1
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
+|+-.|++|||||+..
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 5889999999999875
No 106
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=69.78 E-value=2.5 Score=45.61 Aligned_cols=28 Identities=36% Similarity=0.603 Sum_probs=20.4
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
..++..++.+. ..|+..|.||||||.+|
T Consensus 134 ~~~L~~~v~~~-~nilI~G~tGSGKTTll 161 (323)
T PRK13833 134 ASVIRSAIDSR-LNIVISGGTGSGKTTLA 161 (323)
T ss_pred HHHHHHHHHcC-CeEEEECCCCCCHHHHH
Confidence 45555555543 34778899999999998
No 107
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=69.62 E-value=2.5 Score=45.85 Aligned_cols=72 Identities=26% Similarity=0.308 Sum_probs=44.9
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceeecC-----CCCCCCc----------------------------hhHHHHHHH
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTMDG-----TSDQPGI----------------------------VPRALEELF 199 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM~G-----~~~~~GI----------------------------IpRal~~LF 199 (630)
..++..++++. +.|+..|.||||||.++.- ++++..| =--.+.+|.
T Consensus 163 a~~L~~av~~r-~NILisGGTGSGKTTlLNal~~~i~~~eRvItiEDtaELql~~ph~vrL~TR~~n~Eg~gevtm~dLv 241 (355)
T COG4962 163 AKFLRRAVGIR-CNILISGGTGSGKTTLLNALSGFIDSDERVITIEDTAELQLAHPHVVRLETRPPNVEGTGEVTMRDLV 241 (355)
T ss_pred HHHHHHHHhhc-eeEEEeCCCCCCHHHHHHHHHhcCCCcccEEEEeehhhhccCCCceEEEeecCCCCCCcceEEHHHHH
Confidence 45666666666 7789999999999998732 2222222 223455555
Q ss_pred HH-HhcCCCceEEEEEeEEEEecceeeecCCC
Q 006826 200 RQ-AALDNSSSVTFSMSMLEVYMGSVRDLLAP 230 (630)
Q Consensus 200 ~~-~~~~~~~~~~v~vS~lEIYnE~I~DLL~~ 230 (630)
.. +...++ ++=+-||+....+|||..
T Consensus 242 kn~LRmRPD-----RIiVGEVRG~Ea~dLL~A 268 (355)
T COG4962 242 KNALRMRPD-----RIIVGEVRGVEALDLLQA 268 (355)
T ss_pred HHHhhcCcc-----ceEEEEecCccHHHHHHH
Confidence 43 222222 234679999999999963
No 108
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=68.87 E-value=21 Score=44.65 Aligned_cols=27 Identities=37% Similarity=0.634 Sum_probs=22.3
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
..+|..++.|.++.+.+ +||+|||.+-
T Consensus 466 ~eaI~aiL~GrDVLVim--PTGSGKSLcY 492 (1195)
T PLN03137 466 REIINATMSGYDVFVLM--PTGGGKSLTY 492 (1195)
T ss_pred HHHHHHHHcCCCEEEEc--CCCccHHHHH
Confidence 57888999999965555 9999999873
No 109
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=68.53 E-value=5.4 Score=41.09 Aligned_cols=43 Identities=28% Similarity=0.375 Sum_probs=30.2
Q ss_pred eCCCCChhhHHHhhHHHHHHhhc-C-cceeEEecccCCCCcceee
Q 006826 139 FNQAASQEDVFVEVEPILRSALD-G-HNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 139 F~~~atQ~eVf~~v~plV~svl~-G-yN~~IfaYGqTGSGKTyTM 181 (630)
|++...|+.+-...+.+++.+.. | .=..++-||+.|.|||...
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLA 67 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHH
T ss_pred HHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHH
Confidence 45666889999888888888864 3 3345788999999998643
No 110
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=68.49 E-value=3 Score=40.84 Aligned_cols=29 Identities=31% Similarity=0.401 Sum_probs=20.4
Q ss_pred hHHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 152 VEPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 152 v~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
+.+++..++.. ...+.-.|+||||||.+|
T Consensus 14 ~~~~l~~~v~~-g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 14 QAAYLWLAVEA-RKNILISGGTGSGKTTLL 42 (186)
T ss_pred HHHHHHHHHhC-CCEEEEECCCCCCHHHHH
Confidence 34556666654 334667799999999987
No 111
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=68.17 E-value=2.8 Score=45.70 Aligned_cols=37 Identities=30% Similarity=0.505 Sum_probs=26.8
Q ss_pred CCChhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 142 AASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 142 ~atQ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
+..|..+|+.|-..+.. .+| ..+|.-|+-|+||||.+
T Consensus 3 n~eQ~~~~~~v~~~~~~-~~~--~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 3 NEEQRRVFDTVIEAIEN-EEG--LNFFVTGPAGTGKSFLI 39 (364)
T ss_pred CHHHHHHHHHHHHHHHc-cCC--cEEEEEcCCCCChhHHH
Confidence 35688999887333333 344 46688999999999987
No 112
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=67.86 E-value=3 Score=47.85 Aligned_cols=32 Identities=34% Similarity=0.476 Sum_probs=25.9
Q ss_pred HhhHHHHHHhhcCcc--eeEEecccCCCCcceee
Q 006826 150 VEVEPILRSALDGHN--VCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 150 ~~v~plV~svl~GyN--~~IfaYGqTGSGKTyTM 181 (630)
++|+..++..+.|.. ..++.+|++|+|||.|+
T Consensus 29 ~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv 62 (519)
T PF03215_consen 29 EEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTV 62 (519)
T ss_pred HHHHHHHHHHhccCCCcceEEEECCCCCCHHHHH
Confidence 356788888777653 56788999999999998
No 113
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=67.63 E-value=4 Score=43.00 Aligned_cols=17 Identities=41% Similarity=0.593 Sum_probs=14.1
Q ss_pred eEEecccCCCCcceeec
Q 006826 166 CVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM~ 182 (630)
.|+-.|+||+|||+|+.
T Consensus 196 vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLA 212 (282)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45566999999999984
No 114
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=67.61 E-value=2.9 Score=45.54 Aligned_cols=30 Identities=33% Similarity=0.551 Sum_probs=21.2
Q ss_pred hHHHHHHhhcCcceeEEecccCCCCcceeec
Q 006826 152 VEPILRSALDGHNVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 152 v~plV~svl~GyN~~IfaYGqTGSGKTyTM~ 182 (630)
+..++..++.+ ...|+..|+||||||.+|.
T Consensus 151 ~~~~l~~~v~~-~~nilI~G~tGSGKTTll~ 180 (344)
T PRK13851 151 LEAFLHACVVG-RLTMLLCGPTGSGKTTMSK 180 (344)
T ss_pred HHHHHHHHHHc-CCeEEEECCCCccHHHHHH
Confidence 45556666543 3346778999999999983
No 115
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=67.42 E-value=3.9 Score=45.29 Aligned_cols=18 Identities=39% Similarity=0.556 Sum_probs=16.1
Q ss_pred ceeEEecccCCCCcceee
Q 006826 164 NVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 164 N~~IfaYGqTGSGKTyTM 181 (630)
...|+.+|+||+|||.|+
T Consensus 174 ~~vi~lvGptGvGKTTT~ 191 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTI 191 (388)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 457889999999999998
No 116
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=67.31 E-value=3.2 Score=38.85 Aligned_cols=28 Identities=29% Similarity=0.355 Sum_probs=18.8
Q ss_pred HHHHHhhcCcceeEEecccCCCCcceeec
Q 006826 154 PILRSALDGHNVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 154 plV~svl~GyN~~IfaYGqTGSGKTyTM~ 182 (630)
.++..++++. .-++..|+||||||.++.
T Consensus 15 ~~~~~~~~~~-~~~~i~~~~GsGKT~~~~ 42 (201)
T smart00487 15 EAIEALLSGL-RDVILAAPTGSGKTLAAL 42 (201)
T ss_pred HHHHHHHcCC-CcEEEECCCCCchhHHHH
Confidence 3445555553 344667899999999874
No 117
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=66.60 E-value=3 Score=44.01 Aligned_cols=22 Identities=32% Similarity=0.372 Sum_probs=17.0
Q ss_pred cCc-ceeEEecccCCCCcceeec
Q 006826 161 DGH-NVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 161 ~Gy-N~~IfaYGqTGSGKTyTM~ 182 (630)
.|. ...++-||++|+|||+.+.
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la~ 61 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVAK 61 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHHH
Confidence 554 4566779999999999873
No 118
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=65.74 E-value=5.7 Score=46.94 Aligned_cols=88 Identities=24% Similarity=0.394 Sum_probs=53.2
Q ss_pred EEeceeeCCCCChhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceeecCC---CCCCCchh----HHHHHHHHHHhcC
Q 006826 133 FGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMDGT---SDQPGIVP----RALEELFRQAALD 205 (630)
Q Consensus 133 F~FD~VF~~~atQ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM~G~---~~~~GIIp----Ral~~LF~~~~~~ 205 (630)
|....=|.|.-.|..-|.. +++.+-+|...- ..+|.|||||||||-.- ...|-||- ..+.+|+..+..-
T Consensus 2 f~~~~~~~~~~~Q~~ai~~---l~~~~~~~~~~~-~l~Gvtgs~kt~~~a~~~~~~~~p~Lvi~~n~~~A~ql~~el~~f 77 (655)
T TIGR00631 2 FKLHSPFQPAGDQPKAIAK---LVEGLTDGEKHQ-TLLGVTGSGKTFTMANVIAQVNRPTLVIAHNKTLAAQLYNEFKEF 77 (655)
T ss_pred ceeccCCCCChHHHHHHHH---HHHhhhcCCCcE-EEECCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHHh
Confidence 4444557788888776654 445555663222 37899999999999542 12232221 2344555544322
Q ss_pred -CCceEEEEEeEEEEeccee
Q 006826 206 -NSSSVTFSMSMLEVYMGSV 224 (630)
Q Consensus 206 -~~~~~~v~vS~lEIYnE~I 224 (630)
++..+.+.|||+.-|.-..
T Consensus 78 ~p~~~V~~f~sy~d~y~pe~ 97 (655)
T TIGR00631 78 FPENAVEYFVSYYDYYQPEA 97 (655)
T ss_pred CCCCeEEEEeeecccCCccc
Confidence 3444788899999997654
No 119
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=65.48 E-value=3.8 Score=39.98 Aligned_cols=27 Identities=33% Similarity=0.548 Sum_probs=20.2
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
...++.++.|.| ++..++||+|||.+.
T Consensus 27 ~~~~~~~~~~~~--~li~~~TG~GKT~~~ 53 (203)
T cd00268 27 ARAIPPLLSGRD--VIGQAQTGSGKTAAF 53 (203)
T ss_pred HHHHHHHhcCCc--EEEECCCCCcHHHHH
Confidence 345566666887 577789999999873
No 120
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=65.02 E-value=3.5 Score=44.14 Aligned_cols=40 Identities=33% Similarity=0.390 Sum_probs=26.1
Q ss_pred CChhhHHHhhHHHHHHhhc-C-cceeEEecccCCCCcceeec
Q 006826 143 ASQEDVFVEVEPILRSALD-G-HNVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 143 atQ~eVf~~v~plV~svl~-G-yN~~IfaYGqTGSGKTyTM~ 182 (630)
..|+++-..+..++..... | ....++-||++|+|||+...
T Consensus 28 vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 28 IGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred cCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHH
Confidence 4556666555555555432 2 22357789999999999873
No 121
>PRK04195 replication factor C large subunit; Provisional
Probab=64.97 E-value=4.3 Score=45.96 Aligned_cols=37 Identities=30% Similarity=0.428 Sum_probs=26.7
Q ss_pred hhhHHHhhHHHHHHhhcCc-ceeEEecccCCCCcceee
Q 006826 145 QEDVFVEVEPILRSALDGH-NVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 145 Q~eVf~~v~plV~svl~Gy-N~~IfaYGqTGSGKTyTM 181 (630)
|+++-..+..++.....|. .-.++-||++|+|||++.
T Consensus 19 ~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 19 NEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 3444445566666666665 556888999999999886
No 122
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=64.64 E-value=38 Score=28.67 Aligned_cols=54 Identities=22% Similarity=0.303 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhh
Q 006826 430 KRREIRMAELEEDMREAEAECQNVRNQIKEVESLLSEKKKLFSAACQSLEDEEK 483 (630)
Q Consensus 430 ~~~~~~i~~L~~el~~l~~e~~~l~~qi~~~e~~l~e~~~~~~~~~~~l~~e~~ 483 (630)
..++.+|..|.++...|......+.+.|+.+.....+.++.+......++....
T Consensus 8 ~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~ 61 (74)
T PF12329_consen 8 AEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEK 61 (74)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667888888888777777777777777777777766666665555555443
No 123
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=64.35 E-value=4.2 Score=41.16 Aligned_cols=24 Identities=46% Similarity=0.646 Sum_probs=16.2
Q ss_pred HHHhhcCcceeEEecccCCCCcceee
Q 006826 156 LRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 156 V~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
++.++ .+-.+++.|+.||||||.-
T Consensus 13 ~~al~--~~~~v~~~G~AGTGKT~LA 36 (205)
T PF02562_consen 13 LDALL--NNDLVIVNGPAGTGKTFLA 36 (205)
T ss_dssp HHHHH--H-SEEEEE--TTSSTTHHH
T ss_pred HHHHH--hCCeEEEECCCCCcHHHHH
Confidence 34444 5668999999999999875
No 124
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=64.34 E-value=2.5 Score=43.70 Aligned_cols=20 Identities=30% Similarity=0.306 Sum_probs=15.4
Q ss_pred cceeEEecccCCCCcceeec
Q 006826 163 HNVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 163 yN~~IfaYGqTGSGKTyTM~ 182 (630)
.+..++..|..|||||+||.
T Consensus 12 ~~~~~lV~a~AGSGKT~~l~ 31 (315)
T PF00580_consen 12 TEGPLLVNAGAGSGKTTTLL 31 (315)
T ss_dssp -SSEEEEEE-TTSSHHHHHH
T ss_pred CCCCEEEEeCCCCCchHHHH
Confidence 66677888899999999983
No 125
>PRK13342 recombination factor protein RarA; Reviewed
Probab=64.33 E-value=3.4 Score=45.87 Aligned_cols=38 Identities=29% Similarity=0.413 Sum_probs=23.9
Q ss_pred ChhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 144 SQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 144 tQ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
.|+.+...-..+...+-.+.-..++-||++|+|||+..
T Consensus 16 Gq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA 53 (413)
T PRK13342 16 GQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLA 53 (413)
T ss_pred CcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHH
Confidence 45555544223333333455556777999999999776
No 126
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=64.30 E-value=3.9 Score=45.79 Aligned_cols=26 Identities=38% Similarity=0.572 Sum_probs=20.7
Q ss_pred HHHHHHhhcCcceeEEecccCCCCccee
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFT 180 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyT 180 (630)
...+..+++|.| +++.++||||||.+
T Consensus 32 ~~ai~~~l~g~d--vi~~a~TGsGKT~a 57 (460)
T PRK11776 32 AQSLPAILAGKD--VIAQAKTGSGKTAA 57 (460)
T ss_pred HHHHHHHhcCCC--EEEECCCCCcHHHH
Confidence 456677788988 57777999999976
No 127
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=64.06 E-value=2.2 Score=42.19 Aligned_cols=17 Identities=35% Similarity=0.565 Sum_probs=13.1
Q ss_pred eEEecccCCCCcceeec
Q 006826 166 CVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM~ 182 (630)
-++.+|+||||||.+|.
T Consensus 40 h~li~G~tgsGKS~~l~ 56 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLR 56 (205)
T ss_dssp SEEEE--TTSSHHHHHH
T ss_pred eEEEEcCCCCCccHHHH
Confidence 67899999999999873
No 128
>PRK09183 transposase/IS protein; Provisional
Probab=63.52 E-value=3.5 Score=42.95 Aligned_cols=20 Identities=30% Similarity=0.483 Sum_probs=16.0
Q ss_pred cCcceeEEecccCCCCcceeec
Q 006826 161 DGHNVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 161 ~GyN~~IfaYGqTGSGKTyTM~ 182 (630)
.|.| |+-+|++|+||||.+.
T Consensus 101 ~~~~--v~l~Gp~GtGKThLa~ 120 (259)
T PRK09183 101 RNEN--IVLLGPSGVGKTHLAI 120 (259)
T ss_pred cCCe--EEEEeCCCCCHHHHHH
Confidence 4555 5578999999999884
No 129
>PTZ00424 helicase 45; Provisional
Probab=63.50 E-value=3.8 Score=44.53 Aligned_cols=27 Identities=37% Similarity=0.523 Sum_probs=21.6
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
...+..+++|.|+. ..++||||||.+.
T Consensus 56 ~~ai~~i~~~~d~i--i~apTGsGKT~~~ 82 (401)
T PTZ00424 56 QRGIKPILDGYDTI--GQAQSGTGKTATF 82 (401)
T ss_pred HHHHHHHhCCCCEE--EECCCCChHHHHH
Confidence 45677888999864 5689999999765
No 130
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=63.28 E-value=66 Score=33.99 Aligned_cols=18 Identities=50% Similarity=0.726 Sum_probs=14.3
Q ss_pred cceeEEecccCCCCccee
Q 006826 163 HNVCVLAYGQTGTGKTFT 180 (630)
Q Consensus 163 yN~~IfaYGqTGSGKTyT 180 (630)
.---++.||+.|+|||..
T Consensus 180 QPKGvlLygppgtGktLl 197 (404)
T KOG0728|consen 180 QPKGVLLYGPPGTGKTLL 197 (404)
T ss_pred CCcceEEecCCCCchhHH
Confidence 344589999999999853
No 131
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=62.64 E-value=2.9 Score=38.24 Aligned_cols=15 Identities=27% Similarity=0.576 Sum_probs=13.3
Q ss_pred EEecccCCCCcceee
Q 006826 167 VLAYGQTGTGKTFTM 181 (630)
Q Consensus 167 IfaYGqTGSGKTyTM 181 (630)
|+..|.+|||||+..
T Consensus 2 ii~~G~pgsGKSt~a 16 (143)
T PF13671_consen 2 IILCGPPGSGKSTLA 16 (143)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999864
No 132
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=62.55 E-value=5.3 Score=42.88 Aligned_cols=36 Identities=42% Similarity=0.344 Sum_probs=22.8
Q ss_pred hhHHHh-hHHHHHHhhcC-cceeEEecccCCCCcceee
Q 006826 146 EDVFVE-VEPILRSALDG-HNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 146 ~eVf~~-v~plV~svl~G-yN~~IfaYGqTGSGKTyTM 181 (630)
+.++++ |-.++...+.+ .---.+-||+.|+|||.|.
T Consensus 37 e~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTSta 74 (346)
T KOG0989|consen 37 ELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTA 74 (346)
T ss_pred hhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHH
Confidence 344443 34444444444 3344678999999999997
No 133
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=61.80 E-value=2.5 Score=37.73 Aligned_cols=26 Identities=23% Similarity=0.520 Sum_probs=20.2
Q ss_pred EEecccCCCCcceeecCCCCCCCchhHHHHHHHHHH
Q 006826 167 VLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQA 202 (630)
Q Consensus 167 IfaYGqTGSGKTyTM~G~~~~~GIIpRal~~LF~~~ 202 (630)
|+-||++|.|||+.+. ..+.+|.+..
T Consensus 1 I~i~G~~G~GKS~l~~----------~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAK----------ELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHH----------HHHHHHHHHh
Confidence 5789999999999873 4666666655
No 134
>PRK06547 hypothetical protein; Provisional
Probab=60.54 E-value=6.5 Score=38.41 Aligned_cols=29 Identities=31% Similarity=0.373 Sum_probs=20.3
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
+.++..+..+.---|..+|.+|||||+.-
T Consensus 4 ~~~~~~~~~~~~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 4 ALIAARLCGGGMITVLIDGRSGSGKTTLA 32 (172)
T ss_pred HHHHHHhhcCCCEEEEEECCCCCCHHHHH
Confidence 34445555555556777799999999865
No 135
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=60.42 E-value=4.8 Score=44.62 Aligned_cols=27 Identities=44% Similarity=0.637 Sum_probs=21.8
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
...|..+++|.| +++.++||||||.+.
T Consensus 29 ~~ai~~~~~g~d--~l~~apTGsGKT~~~ 55 (434)
T PRK11192 29 AEAIPPALDGRD--VLGSAPTGTGKTAAF 55 (434)
T ss_pred HHHHHHHhCCCC--EEEECCCCChHHHHH
Confidence 456677888987 788899999999863
No 136
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=59.96 E-value=5 Score=44.40 Aligned_cols=27 Identities=41% Similarity=0.538 Sum_probs=20.8
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
...+..++.|.|+ ++-++||||||.+.
T Consensus 36 ~~aip~il~g~dv--i~~ApTGsGKTla~ 62 (423)
T PRK04837 36 ALALPLTLAGRDV--AGQAQTGTGKTMAF 62 (423)
T ss_pred HHHHHHHhCCCcE--EEECCCCchHHHHH
Confidence 4566778899885 55669999999864
No 137
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=59.87 E-value=5.4 Score=42.52 Aligned_cols=29 Identities=31% Similarity=0.505 Sum_probs=21.7
Q ss_pred hHHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 152 VEPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 152 v~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
+.+++..++.+. ..|+-.|.||||||..|
T Consensus 133 ~~~~l~~~v~~~-~~ili~G~tGsGKTTll 161 (308)
T TIGR02788 133 IKEFLRLAIASR-KNIIISGGTGSGKTTFL 161 (308)
T ss_pred HHHHHHHHhhCC-CEEEEECCCCCCHHHHH
Confidence 566777777655 35566699999999976
No 138
>PLN03025 replication factor C subunit; Provisional
Probab=59.71 E-value=4.8 Score=42.96 Aligned_cols=35 Identities=34% Similarity=0.493 Sum_probs=21.4
Q ss_pred hhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceeec
Q 006826 145 QEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 145 Q~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM~ 182 (630)
|+++...+..++. .|.-..++-||+.|+|||++..
T Consensus 18 ~~~~~~~L~~~~~---~~~~~~lll~Gp~G~GKTtla~ 52 (319)
T PLN03025 18 NEDAVSRLQVIAR---DGNMPNLILSGPPGTGKTTSIL 52 (319)
T ss_pred cHHHHHHHHHHHh---cCCCceEEEECCCCCCHHHHHH
Confidence 4444444433332 3332335669999999999984
No 139
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=59.60 E-value=3.6 Score=36.56 Aligned_cols=15 Identities=33% Similarity=0.394 Sum_probs=13.2
Q ss_pred EEecccCCCCcceee
Q 006826 167 VLAYGQTGTGKTFTM 181 (630)
Q Consensus 167 IfaYGqTGSGKTyTM 181 (630)
|+-.|.+|||||+..
T Consensus 1 I~i~G~~GsGKtTia 15 (129)
T PF13238_consen 1 IGISGIPGSGKTTIA 15 (129)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred CEEECCCCCCHHHHH
Confidence 677899999999876
No 140
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=59.59 E-value=5.3 Score=47.34 Aligned_cols=36 Identities=25% Similarity=0.404 Sum_probs=28.1
Q ss_pred hhHHHhhHHHHHHh-hcCcceeEEecccCCCCcceee
Q 006826 146 EDVFVEVEPILRSA-LDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 146 ~eVf~~v~plV~sv-l~GyN~~IfaYGqTGSGKTyTM 181 (630)
-.||.........+ -.|.|-||+..|.+|||||.++
T Consensus 66 PHif~~a~~A~~~m~~~~~~Q~IiisGeSGsGKTe~~ 102 (689)
T PF00063_consen 66 PHIFAVAQRAYRQMLRTRQNQSIIISGESGSGKTETS 102 (689)
T ss_dssp SSHHHHHHHHHHHHHHHTSEEEEEEEESTTSSHHHHH
T ss_pred Cccchhhhcccccccccccccceeeccccccccccch
Confidence 45777664444444 3689999999999999999996
No 141
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=59.42 E-value=5.7 Score=47.00 Aligned_cols=30 Identities=30% Similarity=0.338 Sum_probs=20.6
Q ss_pred hHHHHHHhhc-----CcceeEEecccCCCCcceeec
Q 006826 152 VEPILRSALD-----GHNVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 152 v~plV~svl~-----GyN~~IfaYGqTGSGKTyTM~ 182 (630)
|..+++.+.. |.+..++. -+||||||+||.
T Consensus 247 v~~~~~~~~~~~~~~~~~~gli~-~~TGsGKT~t~~ 281 (667)
T TIGR00348 247 VKKIVESITRKTWGKDERGGLIW-HTQGSGKTLTML 281 (667)
T ss_pred HHHHHHHHHhcccCCCCceeEEE-EecCCCccHHHH
Confidence 4566666665 34445544 499999999995
No 142
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=59.27 E-value=9.8 Score=39.64 Aligned_cols=110 Identities=20% Similarity=0.225 Sum_probs=59.0
Q ss_pred HHHhhcCccee-EEecccCCCCcceeecCCCCCCCchhHHHHHHHHHHhcCCCceEEEEEeEEEEecceeeecCCCCCcc
Q 006826 156 LRSALDGHNVC-VLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQAALDNSSSVTFSMSMLEVYMGSVRDLLAPKPVF 234 (630)
Q Consensus 156 V~svl~GyN~~-IfaYGqTGSGKTyTM~G~~~~~GIIpRal~~LF~~~~~~~~~~~~v~vS~lEIYnE~I~DLL~~~~~~ 234 (630)
...++.|..+- ++.||..|+|||.++ +.|+......+ +-.+||..+.+.||-.--..
T Consensus 43 t~~Fl~G~pannvLL~G~rGtGKSSlV--------------kall~~y~~~G-------LRlIev~k~~L~~l~~l~~~- 100 (249)
T PF05673_consen 43 TEQFLQGLPANNVLLWGARGTGKSSLV--------------KALLNEYADQG-------LRLIEVSKEDLGDLPELLDL- 100 (249)
T ss_pred HHHHHcCCCCcceEEecCCCCCHHHHH--------------HHHHHHHhhcC-------ceEEEECHHHhccHHHHHHH-
Confidence 35667776443 666999999999876 22333322222 66799998887766421000
Q ss_pred chhhhhcccCeeEEeCCCCCEEEcCcEEEEc-CChHHHHHHHHhhhhcccccccCCCCCCCCcEEE
Q 006826 235 KAYEAATRCNLNIQTDAKGTVEIEGLTEVQI-PDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCL 299 (630)
Q Consensus 235 ~~~~~~~~~~L~i~ed~~g~v~v~glt~v~V-~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~I 299 (630)
+ .. ....--+++.+|+--.- .++..+..+|+-|...| ....-+...|.|-|.|
T Consensus 101 --l---~~------~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~-P~NvliyATSNRRHLv 154 (249)
T PF05673_consen 101 --L---RD------RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEAR-PDNVLIYATSNRRHLV 154 (249)
T ss_pred --H---hc------CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccC-CCcEEEEEecchhhcc
Confidence 0 00 00111234555552222 23556666776665444 3334455666666655
No 143
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=58.82 E-value=3.1 Score=38.24 Aligned_cols=15 Identities=53% Similarity=0.640 Sum_probs=13.5
Q ss_pred EEecccCCCCcceee
Q 006826 167 VLAYGQTGTGKTFTM 181 (630)
Q Consensus 167 IfaYGqTGSGKTyTM 181 (630)
|+-+|++|+|||+.+
T Consensus 2 vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999876
No 144
>PRK13764 ATPase; Provisional
Probab=58.37 E-value=4.5 Score=47.23 Aligned_cols=19 Identities=26% Similarity=0.365 Sum_probs=16.1
Q ss_pred ceeEEecccCCCCcceeec
Q 006826 164 NVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 164 N~~IfaYGqTGSGKTyTM~ 182 (630)
...|+..|+||||||+++.
T Consensus 257 ~~~ILIsG~TGSGKTTll~ 275 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQ 275 (602)
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3448999999999999984
No 145
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=58.05 E-value=8.2 Score=39.89 Aligned_cols=17 Identities=35% Similarity=0.518 Sum_probs=14.7
Q ss_pred eeEEecccCCCCcceee
Q 006826 165 VCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM 181 (630)
.-++-||++|+|||++.
T Consensus 43 ~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVA 59 (261)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 45778999999999986
No 146
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=58.04 E-value=6 Score=44.40 Aligned_cols=27 Identities=37% Similarity=0.621 Sum_probs=21.7
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
...|..+++|.| +++..+||||||.+.
T Consensus 29 ~~ai~~il~g~d--vlv~apTGsGKTla~ 55 (456)
T PRK10590 29 QQAIPAVLEGRD--LMASAQTGTGKTAGF 55 (456)
T ss_pred HHHHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 456777889988 577789999999873
No 147
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=57.83 E-value=6.1 Score=47.15 Aligned_cols=29 Identities=34% Similarity=0.645 Sum_probs=21.0
Q ss_pred cceeEEecccCCCCcceee--------cCCC--CCCCch
Q 006826 163 HNVCVLAYGQTGTGKTFTM--------DGTS--DQPGIV 191 (630)
Q Consensus 163 yN~~IfaYGqTGSGKTyTM--------~G~~--~~~GII 191 (630)
.|-.++.+|+||||||.-+ ||.. .++|+|
T Consensus 270 ~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmI 308 (1172)
T KOG0926|consen 270 ENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMI 308 (1172)
T ss_pred cCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCee
Confidence 3556777899999999887 4433 347776
No 148
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=57.64 E-value=5.2 Score=41.84 Aligned_cols=21 Identities=33% Similarity=0.389 Sum_probs=16.3
Q ss_pred cCcceeEEecccCCCCcceee
Q 006826 161 DGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 161 ~GyN~~IfaYGqTGSGKTyTM 181 (630)
.|...-++-||+.|+|||+++
T Consensus 35 ~~~~~~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 35 EKNMPHLLFAGPPGTGKTTAA 55 (319)
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 344444788999999999876
No 149
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=57.03 E-value=4.2 Score=40.22 Aligned_cols=20 Identities=25% Similarity=0.416 Sum_probs=15.2
Q ss_pred CcceeEEecccCCCCcceee
Q 006826 162 GHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 162 GyN~~IfaYGqTGSGKTyTM 181 (630)
.....||..||.|||||+.+
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~ 32 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLA 32 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHH
Confidence 34567899999999999876
No 150
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=56.57 E-value=4.5 Score=39.52 Aligned_cols=17 Identities=35% Similarity=0.370 Sum_probs=14.7
Q ss_pred eeEEecccCCCCcceee
Q 006826 165 VCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM 181 (630)
+.++-+|+||+|||++.
T Consensus 4 ~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 46788999999999965
No 151
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=56.35 E-value=90 Score=34.72 Aligned_cols=47 Identities=17% Similarity=0.232 Sum_probs=28.4
Q ss_pred HhHHHHHHHHHHHHhCCCCccCCCCchhhhhhcccCCCceeeeEEecCC
Q 006826 349 LSLSALADVIAALRRKRGHVPYRNSKLTQILRDSLGDGSKVLMLVHASP 397 (630)
Q Consensus 349 kSLsaLg~VI~aL~~~~~hiPYRdSKLT~LLqdsLgGnskT~mI~~VSP 397 (630)
.-|..+-+++..-+.. .++.+|+---=+-|.+.+|.++ -+||+.+..
T Consensus 194 e~l~~F~~l~~~T~~R-~~f~~r~~~Yf~~l~~~f~d~a-~~~~A~l~~ 240 (406)
T PF02388_consen 194 EELDDFYDLYKETAER-KGFSIRSLEYFENLYDAFGDKA-KFFLAELNG 240 (406)
T ss_dssp HHHHHHHHHHHHHHHH-TT-----HHHHHHHHHHCCCCE-EEEEEEECC
T ss_pred HHHHHHHHHHHHHHhh-CCCcccCHHHHHHHHHhcCCCe-EEEEEEEcH
Confidence 3466666666665554 4566777776677788887675 488888765
No 152
>PRK10536 hypothetical protein; Provisional
Probab=56.34 E-value=4.8 Score=42.23 Aligned_cols=41 Identities=17% Similarity=0.282 Sum_probs=28.5
Q ss_pred EEEeceeeCCCCChhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 132 EFGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 132 ~F~FD~VF~~~atQ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
.|.|-.|-+-+..|..... .+.+ +..++..|++||||||..
T Consensus 51 ~~~~~~i~p~n~~Q~~~l~-------al~~--~~lV~i~G~aGTGKT~La 91 (262)
T PRK10536 51 SRDTSPILARNEAQAHYLK-------AIES--KQLIFATGEAGCGKTWIS 91 (262)
T ss_pred hcCCccccCCCHHHHHHHH-------HHhc--CCeEEEECCCCCCHHHHH
Confidence 4666667666666655443 2233 348899999999999986
No 153
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=55.38 E-value=50 Score=37.02 Aligned_cols=36 Identities=25% Similarity=0.348 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 436 MAELEEDMREAEAECQNVRNQIKEVESLLSEKKKLF 471 (630)
Q Consensus 436 i~~L~~el~~l~~e~~~l~~qi~~~e~~l~e~~~~~ 471 (630)
.+.|+.+|.+++.++..+..++.+.+..+.+..+.+
T Consensus 61 ~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I 96 (420)
T COG4942 61 RAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQI 96 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhH
Confidence 344555555555555555444444444444444333
No 154
>PHA00729 NTP-binding motif containing protein
Probab=54.73 E-value=9.2 Score=39.31 Aligned_cols=29 Identities=24% Similarity=0.328 Sum_probs=20.9
Q ss_pred HHHHHhhcCcceeEEecccCCCCcceeec
Q 006826 154 PILRSALDGHNVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 154 plV~svl~GyN~~IfaYGqTGSGKTyTM~ 182 (630)
.++..+..|--..|+.+|.+|+||||...
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~ 35 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYAL 35 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHH
Confidence 44555554433579999999999999764
No 155
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=54.45 E-value=6.8 Score=44.17 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=21.1
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
...|..++.|.++ ++..+||||||.+.
T Consensus 17 ~~ai~~~l~g~dv--lv~apTGsGKTl~y 43 (470)
T TIGR00614 17 LEVINAVLLGRDC--FVVMPTGGGKSLCY 43 (470)
T ss_pred HHHHHHHHcCCCE--EEEcCCCCcHhHHH
Confidence 4567788899975 55579999999764
No 156
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=54.06 E-value=6.9 Score=46.83 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=16.9
Q ss_pred cCcceeEEecccCCCCcceee
Q 006826 161 DGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 161 ~GyN~~IfaYGqTGSGKTyTM 181 (630)
.|.-..++-||++|+|||++.
T Consensus 49 ~~~~~slLL~GPpGtGKTTLA 69 (725)
T PRK13341 49 ADRVGSLILYGPPGVGKTTLA 69 (725)
T ss_pred cCCCceEEEECCCCCCHHHHH
Confidence 444456788999999999887
No 157
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=54.05 E-value=6.3 Score=49.37 Aligned_cols=30 Identities=33% Similarity=0.430 Sum_probs=20.2
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceeecC
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTMDG 183 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM~G 183 (630)
..+++.+-+|...+++. .+||||||+||.+
T Consensus 423 ~ai~~a~~~g~r~~Ll~-maTGSGKT~tai~ 452 (1123)
T PRK11448 423 QAVEKAIVEGQREILLA-MATGTGKTRTAIA 452 (1123)
T ss_pred HHHHHHHHhccCCeEEE-eCCCCCHHHHHHH
Confidence 33444444676554444 8999999999864
No 158
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=54.02 E-value=12 Score=41.02 Aligned_cols=42 Identities=26% Similarity=0.442 Sum_probs=30.8
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceeecCC------CCCCCchhHHHH
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTMDGT------SDQPGIVPRALE 196 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM~G~------~~~~GIIpRal~ 196 (630)
..+|-.+|+|.+| +....||||||..+-++ .+-.|+...++.
T Consensus 35 ~~cIpkILeGrdc--ig~AkTGsGKT~AFaLPil~rLsedP~giFalvlT 82 (442)
T KOG0340|consen 35 QACIPKILEGRDC--IGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLT 82 (442)
T ss_pred hhhhHHHhccccc--ccccccCCCcchhhhHHHHHhhccCCCcceEEEec
Confidence 5678889999998 56679999999998764 233466555444
No 159
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=53.38 E-value=11 Score=41.09 Aligned_cols=28 Identities=46% Similarity=0.807 Sum_probs=21.5
Q ss_pred HHHHHhhcCcc---eeEEecccCCCCcceeec
Q 006826 154 PILRSALDGHN---VCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 154 plV~svl~GyN---~~IfaYGqTGSGKTyTM~ 182 (630)
|.+...+.|.. -|||+ |+||||||.-|.
T Consensus 261 pvLNk~LkGhR~GElTvlT-GpTGsGKTTFls 291 (514)
T KOG2373|consen 261 PVLNKYLKGHRPGELTVLT-GPTGSGKTTFLS 291 (514)
T ss_pred hHHHHHhccCCCCceEEEe-cCCCCCceeEeh
Confidence 56777787763 46665 999999998874
No 160
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=53.14 E-value=7.6 Score=40.79 Aligned_cols=28 Identities=36% Similarity=0.398 Sum_probs=20.2
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
.-+++..+.. +--++-.|++|+|||-++
T Consensus 23 ~~ll~~l~~~-~~pvLl~G~~GtGKT~li 50 (272)
T PF12775_consen 23 SYLLDLLLSN-GRPVLLVGPSGTGKTSLI 50 (272)
T ss_dssp HHHHHHHHHC-TEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHHHc-CCcEEEECCCCCchhHHH
Confidence 3455555544 445688899999999876
No 161
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=52.86 E-value=86 Score=26.08 Aligned_cols=48 Identities=17% Similarity=0.265 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 006826 433 EIRMAELEEDMREAEAECQNVRNQIKEVESLLSEKKKLFSAACQSLED 480 (630)
Q Consensus 433 ~~~i~~L~~el~~l~~e~~~l~~qi~~~e~~l~e~~~~~~~~~~~l~~ 480 (630)
+.+|.+|+.++.-++.-++.|.+.+-..+..+...++.+.....++.+
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777777766666666666666555544433
No 162
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=52.73 E-value=12 Score=41.17 Aligned_cols=47 Identities=26% Similarity=0.459 Sum_probs=28.8
Q ss_pred EEEE-ec-eeeCCCCChhhHHHhhHHHHHHhhcC---cceeEEecccCCCCcceee
Q 006826 131 KEFG-FD-KVFNQAASQEDVFVEVEPILRSALDG---HNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 131 ~~F~-FD-~VF~~~atQ~eVf~~v~plV~svl~G---yN~~IfaYGqTGSGKTyTM 181 (630)
+.|. || .||+. ++.-..+...+..+..| .+..+.-.|++|||||...
T Consensus 44 ~~y~~F~~~~~G~----~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla 95 (361)
T smart00763 44 KRYRFFDHDFFGM----EEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLV 95 (361)
T ss_pred eeccccchhccCc----HHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHH
Confidence 4454 45 67764 44444443344444444 4566888999999999653
No 163
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=52.70 E-value=9.8 Score=42.55 Aligned_cols=18 Identities=39% Similarity=0.530 Sum_probs=15.7
Q ss_pred eeEEecccCCCCcceeec
Q 006826 165 VCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM~ 182 (630)
..|+-.|++|+|||.|+.
T Consensus 242 ~vI~LVGptGvGKTTTia 259 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLA 259 (436)
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 568889999999999983
No 164
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=52.54 E-value=11 Score=44.85 Aligned_cols=36 Identities=25% Similarity=0.420 Sum_probs=28.4
Q ss_pred hhHHHhhHHHHHHhh-cCcceeEEecccCCCCcceee
Q 006826 146 EDVFVEVEPILRSAL-DGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 146 ~eVf~~v~plV~svl-~GyN~~IfaYGqTGSGKTyTM 181 (630)
-.||.-.......++ .|.|-||+.-|.+|||||.|.
T Consensus 73 PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T cd01383 73 PHVYAIADTAYNEMMRDEVNQSIIISGESGAGKTETA 109 (677)
T ss_pred CCHHHHHHHHHHHHHHcCCCceEEEecCCCCCcchHH
Confidence 467876644455544 589999999999999999986
No 165
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=52.51 E-value=6 Score=42.81 Aligned_cols=18 Identities=39% Similarity=0.612 Sum_probs=14.7
Q ss_pred cceeEEecccCCCCccee
Q 006826 163 HNVCVLAYGQTGTGKTFT 180 (630)
Q Consensus 163 yN~~IfaYGqTGSGKTyT 180 (630)
..+-|+..|+||||||+.
T Consensus 96 ~KSNILLiGPTGsGKTlL 113 (408)
T COG1219 96 SKSNILLIGPTGSGKTLL 113 (408)
T ss_pred eeccEEEECCCCCcHHHH
Confidence 345688899999999974
No 166
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=52.30 E-value=13 Score=41.97 Aligned_cols=18 Identities=33% Similarity=0.477 Sum_probs=15.8
Q ss_pred ceeEEecccCCCCcceee
Q 006826 164 NVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 164 N~~IfaYGqTGSGKTyTM 181 (630)
...|+-+|.+|+|||.|.
T Consensus 95 p~vI~lvG~~GsGKTTta 112 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTA 112 (437)
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 457888899999999997
No 167
>smart00338 BRLZ basic region leucin zipper.
Probab=52.26 E-value=75 Score=25.75 Aligned_cols=38 Identities=24% Similarity=0.429 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 432 REIRMAELEEDMREAEAECQNVRNQIKEVESLLSEKKK 469 (630)
Q Consensus 432 ~~~~i~~L~~el~~l~~e~~~l~~qi~~~e~~l~e~~~ 469 (630)
+...+.+|+.++..++.++..|+.++..++..+.....
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 24 KKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888888888888888877777766654443
No 168
>PRK04406 hypothetical protein; Provisional
Probab=51.97 E-value=1.3e+02 Score=25.59 Aligned_cols=47 Identities=13% Similarity=0.232 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 006826 432 REIRMAELEEDMREAEAECQNVRNQIKEVESLLSEKKKLFSAACQSL 478 (630)
Q Consensus 432 ~~~~i~~L~~el~~l~~e~~~l~~qi~~~e~~l~e~~~~~~~~~~~l 478 (630)
.+.++.+|+.++.-++.-+..|.+.+-..+..+....+.+....+.+
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl 55 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKV 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777777666666666665555554444444
No 169
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=51.76 E-value=5.5 Score=43.92 Aligned_cols=19 Identities=37% Similarity=0.384 Sum_probs=15.9
Q ss_pred ceeEEecccCCCCcceeec
Q 006826 164 NVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 164 N~~IfaYGqTGSGKTyTM~ 182 (630)
...|+-+|+||+|||+|+.
T Consensus 137 g~ii~lvGptGvGKTTtia 155 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTA 155 (374)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4567789999999999983
No 170
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=51.56 E-value=10 Score=42.48 Aligned_cols=17 Identities=47% Similarity=0.599 Sum_probs=14.3
Q ss_pred eEEecccCCCCcceeec
Q 006826 166 CVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM~ 182 (630)
+|+-.|+||+|||+|+.
T Consensus 223 ~i~~vGptGvGKTTt~~ 239 (424)
T PRK05703 223 VVALVGPTGVGKTTTLA 239 (424)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 56666999999999973
No 171
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=51.53 E-value=11 Score=44.92 Aligned_cols=36 Identities=25% Similarity=0.469 Sum_probs=27.3
Q ss_pred hhHHHhhHHHHHHhh-cCcceeEEecccCCCCcceee
Q 006826 146 EDVFVEVEPILRSAL-DGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 146 ~eVf~~v~plV~svl-~GyN~~IfaYGqTGSGKTyTM 181 (630)
-.||.-.......++ .|.|-||+.-|.+|||||.|.
T Consensus 75 PHiy~iA~~Ay~~m~~~~~~QsIiisGESGAGKTet~ 111 (692)
T cd01385 75 PHIFAIADVAYYNMLRKKVNQCIVISGESGSGKTEST 111 (692)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 457765544444433 689999999999999999986
No 172
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=51.41 E-value=11 Score=44.90 Aligned_cols=36 Identities=31% Similarity=0.491 Sum_probs=28.6
Q ss_pred hhHHHhhHHHHHHhh-cCcceeEEecccCCCCcceee
Q 006826 146 EDVFVEVEPILRSAL-DGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 146 ~eVf~~v~plV~svl-~GyN~~IfaYGqTGSGKTyTM 181 (630)
-.||.-.......++ .|.|.||+.-|.+|||||.+.
T Consensus 67 PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (679)
T cd00124 67 PHVFAIADRAYRNMLRDRRNQSIIISGESGAGKTENT 103 (679)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 457776555555554 589999999999999999986
No 173
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=51.24 E-value=11 Score=44.86 Aligned_cols=36 Identities=31% Similarity=0.555 Sum_probs=27.2
Q ss_pred hhHHHhhHHHHHHhh-cCcceeEEecccCCCCcceee
Q 006826 146 EDVFVEVEPILRSAL-DGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 146 ~eVf~~v~plV~svl-~GyN~~IfaYGqTGSGKTyTM 181 (630)
-.||.-.......++ .|.|.||+.-|.+|||||.|.
T Consensus 69 PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 105 (674)
T cd01384 69 PHVFAIADAAYRAMINEGKSQSILVSGESGAGKTETT 105 (674)
T ss_pred CCHHHHHHHHHHHHHHcCCCceEEEECCCCCCchhHH
Confidence 457765543344433 689999999999999999986
No 174
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=51.19 E-value=83 Score=33.30 Aligned_cols=86 Identities=24% Similarity=0.393 Sum_probs=51.8
Q ss_pred EEEEEeCCceEEEEeceeeCCCCChhhHHHhh-HHHHHHhhc---Cc--ceeEEecccCCCCcceeec------------
Q 006826 121 KVVVRSGGSKKEFGFDKVFNQAASQEDVFVEV-EPILRSALD---GH--NVCVLAYGQTGTGKTFTMD------------ 182 (630)
Q Consensus 121 ~v~v~~~~~~~~F~FD~VF~~~atQ~eVf~~v-~plV~svl~---Gy--N~~IfaYGqTGSGKTyTM~------------ 182 (630)
+|.+.....+-...|-.|=+-+..-++|-+.| -|+.+.-+- |. ---++.||+.|+|||-..-
T Consensus 140 si~ml~~~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~fir 219 (408)
T KOG0727|consen 140 SISMLGPDEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIR 219 (408)
T ss_pred cccccCCCCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheee
Confidence 34433333333445555555555556677766 566665441 33 2348999999999985431
Q ss_pred --CCC---CCCCchhHHHHHHHHHHhcCC
Q 006826 183 --GTS---DQPGIVPRALEELFRQAALDN 206 (630)
Q Consensus 183 --G~~---~~~GIIpRal~~LF~~~~~~~ 206 (630)
|+. ..-|==||.++++|....++.
T Consensus 220 vvgsefvqkylgegprmvrdvfrlakena 248 (408)
T KOG0727|consen 220 VVGSEFVQKYLGEGPRMVRDVFRLAKENA 248 (408)
T ss_pred eccHHHHHHHhccCcHHHHHHHHHHhccC
Confidence 211 123666999999998766543
No 175
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=51.16 E-value=90 Score=25.22 Aligned_cols=38 Identities=24% Similarity=0.470 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 431 RREIRMAELEEDMREAEAECQNVRNQIKEVESLLSEKK 468 (630)
Q Consensus 431 ~~~~~i~~L~~el~~l~~e~~~l~~qi~~~e~~l~e~~ 468 (630)
.+...+.+|+.++..++.++..|+.++..++..+....
T Consensus 23 RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 23 RKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456778888888888888888877777766655443
No 176
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=50.55 E-value=8.4 Score=43.40 Aligned_cols=27 Identities=41% Similarity=0.544 Sum_probs=21.3
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
...+..+++|.|+.+ ..+||||||.+.
T Consensus 115 ~~ai~~~~~G~dvi~--~apTGSGKTlay 141 (475)
T PRK01297 115 AQVLGYTLAGHDAIG--RAQTGTGKTAAF 141 (475)
T ss_pred HHHHHHHhCCCCEEE--ECCCCChHHHHH
Confidence 456778899998755 559999999764
No 177
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=50.54 E-value=12 Score=39.44 Aligned_cols=33 Identities=36% Similarity=0.537 Sum_probs=24.4
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee------cCCCC
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTM------DGTSD 186 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM------~G~~~ 186 (630)
.||+ ..+.--+..|-.||+|++|||.++ +|+++
T Consensus 183 ~pLL-~~l~~~~~~~hl~G~Ss~GKTt~~~~a~Sv~G~p~ 221 (286)
T PF06048_consen 183 APLL-SLLGVEGFGFHLYGQSSSGKTTALQLAASVWGNPD 221 (286)
T ss_pred HHHH-HHhCCCceEEEEEeCCCCCHHHHHHHhhhhCcCch
Confidence 3444 445566778889999999999887 56655
No 178
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=50.50 E-value=15 Score=45.82 Aligned_cols=17 Identities=41% Similarity=0.575 Sum_probs=13.9
Q ss_pred eeEEecccCCCCcceee
Q 006826 165 VCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM 181 (630)
..+.-+|+||||||..+
T Consensus 27 gl~~I~G~nGaGKSTil 43 (1042)
T TIGR00618 27 PIFLICGKTGAGKTTLL 43 (1042)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45667899999999765
No 179
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=50.49 E-value=12 Score=44.33 Aligned_cols=36 Identities=22% Similarity=0.476 Sum_probs=27.5
Q ss_pred hhHHHhhHHHHHHhh-cCcceeEEecccCCCCcceee
Q 006826 146 EDVFVEVEPILRSAL-DGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 146 ~eVf~~v~plV~svl-~GyN~~IfaYGqTGSGKTyTM 181 (630)
-.||.........++ .|.|-||+.-|.+|||||.|.
T Consensus 67 PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTes~ 103 (671)
T cd01381 67 PHIFAISDNAYTNMQREKKNQCIIISGESGAGKTEST 103 (671)
T ss_pred CCHHHHHHHHHHHHHHcCCCceEEEEcCCCCCeehHH
Confidence 457765544444443 689999999999999999986
No 180
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=50.46 E-value=11 Score=41.74 Aligned_cols=51 Identities=20% Similarity=0.284 Sum_probs=35.5
Q ss_pred EEEEeceeeCCCCChhhHHHhh-HHHHHHhhc--C--cceeEEecccCCCCcceee
Q 006826 131 KEFGFDKVFNQAASQEDVFVEV-EPILRSALD--G--HNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 131 ~~F~FD~VF~~~atQ~eVf~~v-~plV~svl~--G--yN~~IfaYGqTGSGKTyTM 181 (630)
..+.||.+.+...--..+.+.+ ..+..+.+. | .---+.-||+.|+|||+..
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllA 165 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQC 165 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHH
Confidence 5678888876655545555555 677777763 2 3345778999999999873
No 181
>PHA02653 RNA helicase NPH-II; Provisional
Probab=50.35 E-value=11 Score=44.61 Aligned_cols=26 Identities=31% Similarity=0.371 Sum_probs=19.5
Q ss_pred HHHHHHhhcCcceeEEecccCCCCccee
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFT 180 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyT 180 (630)
..++..++.|.++ +..|+||||||..
T Consensus 170 ~qil~~i~~gkdv--Iv~A~TGSGKTtq 195 (675)
T PHA02653 170 LKIFEAWISRKPV--VLTGGTGVGKTSQ 195 (675)
T ss_pred HHHHHHHHhCCCE--EEECCCCCCchhH
Confidence 3455566677654 8899999999975
No 182
>PRK06696 uridine kinase; Validated
Probab=50.28 E-value=14 Score=37.22 Aligned_cols=35 Identities=20% Similarity=0.115 Sum_probs=23.2
Q ss_pred hHHHhhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 147 DVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 147 eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
++..++...|...-.+....|...|.+|||||+..
T Consensus 5 ~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA 39 (223)
T PRK06696 5 QLIKELAEHILTLNLTRPLRVAIDGITASGKTTFA 39 (223)
T ss_pred HHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHH
Confidence 34444433333334566777888999999999865
No 183
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=50.23 E-value=12 Score=44.57 Aligned_cols=36 Identities=28% Similarity=0.526 Sum_probs=27.8
Q ss_pred hhHHHhhHHHHHHhh-cCcceeEEecccCCCCcceee
Q 006826 146 EDVFVEVEPILRSAL-DGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 146 ~eVf~~v~plV~svl-~GyN~~IfaYGqTGSGKTyTM 181 (630)
-.||.-.......++ .|.|-||+.-|.+|||||.|.
T Consensus 67 PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (674)
T cd01378 67 PHIYALADNAYRSMKSENENQCVIISGESGAGKTEAA 103 (674)
T ss_pred CCHHHHHHHHHHHHHHcCCCceEEEEcCCCCCcchHH
Confidence 457765544444444 689999999999999999986
No 184
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=50.22 E-value=8.4 Score=40.87 Aligned_cols=28 Identities=32% Similarity=0.519 Sum_probs=23.5
Q ss_pred HHHH-HhhcCcceeEEecccCCCCcceee
Q 006826 154 PILR-SALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 154 plV~-svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
+||. ++-+||.--|++.|.||-|||..|
T Consensus 31 QLV~ksv~~GF~FNilCvGETg~GKsTLm 59 (406)
T KOG3859|consen 31 QLVNKSVSQGFCFNILCVGETGLGKSTLM 59 (406)
T ss_pred HHHHHHHhcCceEEEEEeccCCccHHHHH
Confidence 4554 455899999999999999999876
No 185
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=50.01 E-value=12 Score=44.46 Aligned_cols=36 Identities=28% Similarity=0.484 Sum_probs=28.0
Q ss_pred hhHHHhhHHHHHHhh-cCcceeEEecccCCCCcceee
Q 006826 146 EDVFVEVEPILRSAL-DGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 146 ~eVf~~v~plV~svl-~GyN~~IfaYGqTGSGKTyTM 181 (630)
-.||.-.......++ .|.|-||+.-|.+|||||.|.
T Consensus 68 PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 104 (677)
T cd01387 68 PHLFAIANLAFAKMLDAKQNQCVIISGESGSGKTEAT 104 (677)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEEcCCCCCeehHH
Confidence 457766544444444 699999999999999999986
No 186
>PRK00295 hypothetical protein; Provisional
Probab=49.84 E-value=1.2e+02 Score=25.32 Aligned_cols=46 Identities=17% Similarity=0.203 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 006826 434 IRMAELEEDMREAEAECQNVRNQIKEVESLLSEKKKLFSAACQSLE 479 (630)
Q Consensus 434 ~~i~~L~~el~~l~~e~~~l~~qi~~~e~~l~e~~~~~~~~~~~l~ 479 (630)
.+|.+|+.++.-.++-+..|.+.+-..+..+...++.+......+.
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~ 50 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQE 50 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777777777776666666666655555444443
No 187
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=49.82 E-value=10 Score=42.89 Aligned_cols=38 Identities=11% Similarity=0.138 Sum_probs=23.9
Q ss_pred cCCCceeeeEEecCCCCCcHHHhHHHHHHHH--Hhhcccccccc
Q 006826 383 LGDGSKVLMLVHASPCEEDVGETICSLSFAK--RARGIESNREL 424 (630)
Q Consensus 383 LgGnskT~mI~~VSP~~~~~~ETlsTLrFA~--rar~I~~~~~~ 424 (630)
+.-..+..+|+|++..+.. +..|.+|- |..=|...+..
T Consensus 320 f~iP~Nl~IIgTMNt~Drs----~~~lD~AlrRRF~fi~i~p~~ 359 (459)
T PRK11331 320 FYVPENVYIIGLMNTADRS----LAVVDYALRRRFSFIDIEPGF 359 (459)
T ss_pred ccCCCCeEEEEecCccccc----hhhccHHHHhhhheEEecCCC
Confidence 4446789999999988754 44566654 44444444443
No 188
>PRK14974 cell division protein FtsY; Provisional
Probab=49.70 E-value=13 Score=40.41 Aligned_cols=18 Identities=44% Similarity=0.626 Sum_probs=16.2
Q ss_pred ceeEEecccCCCCcceee
Q 006826 164 NVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 164 N~~IfaYGqTGSGKTyTM 181 (630)
...|.-.|.+|+|||.|+
T Consensus 140 ~~vi~~~G~~GvGKTTti 157 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTI 157 (336)
T ss_pred CeEEEEEcCCCCCHHHHH
Confidence 467889999999999997
No 189
>PRK00736 hypothetical protein; Provisional
Probab=49.59 E-value=1.1e+02 Score=25.45 Aligned_cols=46 Identities=22% Similarity=0.278 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 006826 434 IRMAELEEDMREAEAECQNVRNQIKEVESLLSEKKKLFSAACQSLE 479 (630)
Q Consensus 434 ~~i~~L~~el~~l~~e~~~l~~qi~~~e~~l~e~~~~~~~~~~~l~ 479 (630)
.+|.+|+.++.-.+.-++.|.+.+..-+..+....+.+......+.
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~ 50 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFL 50 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788888888888888877777777666666666655554443
No 190
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=49.33 E-value=11 Score=42.05 Aligned_cols=18 Identities=39% Similarity=0.543 Sum_probs=15.7
Q ss_pred ceeEEecccCCCCcceee
Q 006826 164 NVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 164 N~~IfaYGqTGSGKTyTM 181 (630)
..-|.-.||||-|||.|+
T Consensus 203 ~~vi~LVGPTGVGKTTTl 220 (407)
T COG1419 203 KRVIALVGPTGVGKTTTL 220 (407)
T ss_pred CcEEEEECCCCCcHHHHH
Confidence 566777899999999998
No 191
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=49.29 E-value=6 Score=36.26 Aligned_cols=15 Identities=47% Similarity=0.831 Sum_probs=13.1
Q ss_pred EEecccCCCCcceee
Q 006826 167 VLAYGQTGTGKTFTM 181 (630)
Q Consensus 167 IfaYGqTGSGKTyTM 181 (630)
++-+|++|+|||+.+
T Consensus 2 ~~i~G~~G~GKT~l~ 16 (165)
T cd01120 2 ILVFGPTGSGKTTLA 16 (165)
T ss_pred eeEeCCCCCCHHHHH
Confidence 567999999999976
No 192
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=49.18 E-value=6.6 Score=41.45 Aligned_cols=18 Identities=50% Similarity=0.680 Sum_probs=14.6
Q ss_pred ceeEEecccCCCCcceee
Q 006826 164 NVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 164 N~~IfaYGqTGSGKTyTM 181 (630)
--.|+-||++|+|||++-
T Consensus 151 PknVLFyGppGTGKTm~A 168 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMA 168 (368)
T ss_pred cceeEEECCCCccHHHHH
Confidence 345788999999999764
No 193
>PHA02244 ATPase-like protein
Probab=49.13 E-value=15 Score=40.65 Aligned_cols=21 Identities=24% Similarity=0.309 Sum_probs=15.6
Q ss_pred hhcCcceeEEecccCCCCcceee
Q 006826 159 ALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 159 vl~GyN~~IfaYGqTGSGKTyTM 181 (630)
+-.|.++ +-+|+||+|||+..
T Consensus 116 l~~~~PV--LL~GppGtGKTtLA 136 (383)
T PHA02244 116 VNANIPV--FLKGGAGSGKNHIA 136 (383)
T ss_pred HhcCCCE--EEECCCCCCHHHHH
Confidence 3356655 45899999999876
No 194
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=48.94 E-value=12 Score=44.58 Aligned_cols=43 Identities=30% Similarity=0.556 Sum_probs=31.8
Q ss_pred ceeeCCCCChhhHHHh---h----HHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 136 DKVFNQAASQEDVFVE---V----EPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 136 D~VF~~~atQ~eVf~~---v----~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
++-+++++-|..+|.. + ..+++.+| |.|+.|-+ +||+|||+.-
T Consensus 44 ~~~~~~s~~~~~~~p~~~~lR~YQ~eivq~AL-gkNtii~l--PTG~GKTfIA 93 (746)
T KOG0354|consen 44 SHSLDESAAQRWIYPTNLELRNYQEELVQPAL-GKNTIIAL--PTGSGKTFIA 93 (746)
T ss_pred cCCCChhhhccccccCcccccHHHHHHhHHhh-cCCeEEEe--ecCCCccchH
Confidence 5556666666666632 1 46899999 99987766 9999999863
No 195
>PRK10865 protein disaggregation chaperone; Provisional
Probab=48.85 E-value=12 Score=45.67 Aligned_cols=45 Identities=27% Similarity=0.282 Sum_probs=29.5
Q ss_pred EEeceeeCCCCChhhHHHhhHHHHHHhhcCcc------eeEEecccCCCCcceee
Q 006826 133 FGFDKVFNQAASQEDVFVEVEPILRSALDGHN------VCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 133 F~FD~VF~~~atQ~eVf~~v~plV~svl~GyN------~~IfaYGqTGSGKTyTM 181 (630)
.-+.+|++ |...-..|...|..+..|.. +.++-+|++|+|||++.
T Consensus 565 ~l~~~viG----Q~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA 615 (857)
T PRK10865 565 ELHHRVIG----QNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615 (857)
T ss_pred HhCCeEeC----CHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHH
Confidence 34566765 45555555555555544432 56788899999999976
No 196
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=48.85 E-value=13 Score=38.53 Aligned_cols=27 Identities=37% Similarity=0.356 Sum_probs=19.0
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
+.++..+..|.++ +-+|++|+|||...
T Consensus 12 ~~~l~~l~~g~~v--LL~G~~GtGKT~lA 38 (262)
T TIGR02640 12 SRALRYLKSGYPV--HLRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHHHhcCCeE--EEEcCCCCCHHHHH
Confidence 4444555566655 45899999999865
No 197
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=48.80 E-value=8.5 Score=45.37 Aligned_cols=38 Identities=26% Similarity=0.391 Sum_probs=24.2
Q ss_pred hhhHHHhhHHHHHHhhcCc--ceeEEecccCCCCcceeec
Q 006826 145 QEDVFVEVEPILRSALDGH--NVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 145 Q~eVf~~v~plV~svl~Gy--N~~IfaYGqTGSGKTyTM~ 182 (630)
|.....+|..++..+.-+. .-.++-||++|+|||.++.
T Consensus 89 ~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~ 128 (637)
T TIGR00602 89 HKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIK 128 (637)
T ss_pred cHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHH
Confidence 4444444555555544332 2247889999999999984
No 198
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=48.72 E-value=14 Score=39.79 Aligned_cols=17 Identities=41% Similarity=0.657 Sum_probs=14.6
Q ss_pred eeEEecccCCCCcceee
Q 006826 165 VCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM 181 (630)
..|.-.|++|+|||.|+
T Consensus 115 ~vi~lvGpnGsGKTTt~ 131 (318)
T PRK10416 115 FVILVVGVNGVGKTTTI 131 (318)
T ss_pred eEEEEECCCCCcHHHHH
Confidence 46667799999999998
No 199
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=48.63 E-value=6.7 Score=42.22 Aligned_cols=36 Identities=22% Similarity=0.419 Sum_probs=25.0
Q ss_pred eeEEecccCCCCcceeec---C-----C--------CCCCCchhHHHHHHHH
Q 006826 165 VCVLAYGQTGTGKTFTMD---G-----T--------SDQPGIVPRALEELFR 200 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM~---G-----~--------~~~~GIIpRal~~LF~ 200 (630)
.....||+|||||++.+- + + ..+.|+||--=...++
T Consensus 88 ~I~~VYGPTG~GKSqLlRNLis~~lI~P~PETVfFItP~~~mIpp~E~~aW~ 139 (369)
T PF02456_consen 88 FIGVVYGPTGSGKSQLLRNLISCQLIQPPPETVFFITPQKDMIPPQEITAWE 139 (369)
T ss_pred eEEEEECCCCCCHHHHHHHhhhcCcccCCCCceEEECCCCCCCCHHHHHHHH
Confidence 345679999999999873 1 1 1457999876555554
No 200
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=48.61 E-value=14 Score=38.93 Aligned_cols=17 Identities=41% Similarity=0.565 Sum_probs=13.9
Q ss_pred eeEEecccCCCCcceee
Q 006826 165 VCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM 181 (630)
.+|...|++|+|||.|.
T Consensus 73 ~vi~l~G~~G~GKTTt~ 89 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTI 89 (272)
T ss_pred eEEEEECCCCCcHHHHH
Confidence 45555599999999997
No 201
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=48.51 E-value=10 Score=44.12 Aligned_cols=27 Identities=44% Similarity=0.551 Sum_probs=21.4
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
...|..+++|.|+ ++.++||||||.+.
T Consensus 37 ~~~ip~~l~G~Dv--i~~ApTGSGKTlaf 63 (572)
T PRK04537 37 ALTLPVALPGGDV--AGQAQTGTGKTLAF 63 (572)
T ss_pred HHHHHHHhCCCCE--EEEcCCCCcHHHHH
Confidence 4567778999985 55779999999764
No 202
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=48.06 E-value=1e+02 Score=31.74 Aligned_cols=35 Identities=20% Similarity=0.317 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 438 ELEEDMREAEAECQNVRNQIKEVESLLSEKKKLFS 472 (630)
Q Consensus 438 ~L~~el~~l~~e~~~l~~qi~~~e~~l~e~~~~~~ 472 (630)
+|..+++.++.+++.++.+++.++..+...++.+.
T Consensus 53 ~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~ 87 (251)
T PF11932_consen 53 ELLAEYRQLEREIENLEVYNEQLERQVASQEQELA 87 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444333333
No 203
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=48.00 E-value=13 Score=44.31 Aligned_cols=36 Identities=31% Similarity=0.488 Sum_probs=27.6
Q ss_pred hhHHHhhHHHHHHhh-cCcceeEEecccCCCCcceee
Q 006826 146 EDVFVEVEPILRSAL-DGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 146 ~eVf~~v~plV~svl-~GyN~~IfaYGqTGSGKTyTM 181 (630)
-.||.-.......++ .|.|.||+.-|.+|||||.|.
T Consensus 73 PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T smart00242 73 PHVFAIADNAYRNMLNDKENQSIIISGESGAGKTENT 109 (677)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEecCCCCcchHHH
Confidence 457766544444433 689999999999999999986
No 204
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=47.68 E-value=12 Score=44.64 Aligned_cols=36 Identities=22% Similarity=0.316 Sum_probs=27.5
Q ss_pred hhHHHhhHHHHHHhh-cCcceeEEecccCCCCcceee
Q 006826 146 EDVFVEVEPILRSAL-DGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 146 ~eVf~~v~plV~svl-~GyN~~IfaYGqTGSGKTyTM 181 (630)
-.||.-.......++ .|.|-||+.-|.+|||||.|.
T Consensus 72 PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTes~ 108 (717)
T cd01382 72 PHVFAIADKAYRDMKVLKMSQSIIVSGESGAGKTENT 108 (717)
T ss_pred CcHHHHHHHHHHHHHhcCCCCeEEEecCCCCChhHHH
Confidence 357765544444443 689999999999999999986
No 205
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=47.62 E-value=7.3 Score=41.18 Aligned_cols=21 Identities=33% Similarity=0.627 Sum_probs=18.4
Q ss_pred cCcceeEEecccCCCCcceee
Q 006826 161 DGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 161 ~GyN~~IfaYGqTGSGKTyTM 181 (630)
.|++-+||..|++|+|||.-+
T Consensus 1 kg~~fnImVvG~sG~GKTTFI 21 (281)
T PF00735_consen 1 KGFNFNIMVVGESGLGKTTFI 21 (281)
T ss_dssp HEEEEEEEEEECTTSSHHHHH
T ss_pred CCceEEEEEECCCCCCHHHHH
Confidence 388999999999999999743
No 206
>PRK02119 hypothetical protein; Provisional
Probab=47.59 E-value=1.3e+02 Score=25.46 Aligned_cols=47 Identities=19% Similarity=0.231 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 006826 433 EIRMAELEEDMREAEAECQNVRNQIKEVESLLSEKKKLFSAACQSLE 479 (630)
Q Consensus 433 ~~~i~~L~~el~~l~~e~~~l~~qi~~~e~~l~e~~~~~~~~~~~l~ 479 (630)
+.++.+|+.++.-.++-+..|.+.+...+..+...++.+....+.+.
T Consensus 8 e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~ 54 (73)
T PRK02119 8 ENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLK 54 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777777666666666666655555544443
No 207
>PF05729 NACHT: NACHT domain
Probab=47.52 E-value=7.3 Score=36.05 Aligned_cols=16 Identities=25% Similarity=0.532 Sum_probs=14.0
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
.++.+|..|+|||..|
T Consensus 2 ~l~I~G~~G~GKStll 17 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLL 17 (166)
T ss_pred EEEEECCCCCChHHHH
Confidence 3678999999999987
No 208
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=47.36 E-value=14 Score=44.16 Aligned_cols=36 Identities=33% Similarity=0.509 Sum_probs=27.9
Q ss_pred hhHHHhhHHHHHHhh-cCcceeEEecccCCCCcceee
Q 006826 146 EDVFVEVEPILRSAL-DGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 146 ~eVf~~v~plV~svl-~GyN~~IfaYGqTGSGKTyTM 181 (630)
-.||.-.......++ .|.|-||+.-|.+|||||.+.
T Consensus 72 PHiyaiA~~Ay~~m~~~~~~QsIiiSGESGAGKTes~ 108 (693)
T cd01377 72 PHIFAIADNAYRSMLQDRENQSILITGESGAGKTENT 108 (693)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 467765544444444 699999999999999999986
No 209
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=47.28 E-value=8.4 Score=43.62 Aligned_cols=62 Identities=27% Similarity=0.412 Sum_probs=38.0
Q ss_pred HHHhhcCcceeEEecccCCCCcceeecCC---------C-----CCCCchhH---------HHHHHHHHHhcCCCceEEE
Q 006826 156 LRSALDGHNVCVLAYGQTGTGKTFTMDGT---------S-----DQPGIVPR---------ALEELFRQAALDNSSSVTF 212 (630)
Q Consensus 156 V~svl~GyN~~IfaYGqTGSGKTyTM~G~---------~-----~~~GIIpR---------al~~LF~~~~~~~~~~~~v 212 (630)
|..+.+|... +|++|||||||+...++ + ...|..|+ .+.+||++... ..|.-
T Consensus 105 ip~i~~Grdl--~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k---~~~~s 179 (482)
T KOG0335|consen 105 IPIISGGRDL--MACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARK---FSYLS 179 (482)
T ss_pred cceeecCCce--EEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHh---hcccc
Confidence 4455566665 89999999999998653 0 01111222 34567765442 34555
Q ss_pred EEeEEEEecc
Q 006826 213 SMSMLEVYMG 222 (630)
Q Consensus 213 ~vS~lEIYnE 222 (630)
.+-.+.+|+.
T Consensus 180 ~~~~~~~ygg 189 (482)
T KOG0335|consen 180 GMKSVVVYGG 189 (482)
T ss_pred cceeeeeeCC
Confidence 6667788877
No 210
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=47.07 E-value=14 Score=44.02 Aligned_cols=36 Identities=25% Similarity=0.481 Sum_probs=27.5
Q ss_pred hhHHHhhHHHHHHhh-cCcceeEEecccCCCCcceee
Q 006826 146 EDVFVEVEPILRSAL-DGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 146 ~eVf~~v~plV~svl-~GyN~~IfaYGqTGSGKTyTM 181 (630)
-.||.-.......++ .|.|-||+.-|.+|||||.+.
T Consensus 67 PHifaiA~~Ay~~m~~~~~~QsIiiSGESGaGKTes~ 103 (691)
T cd01380 67 PHIFAIAEEAYKQMTRDEKNQSIIVSGESGAGKTVSA 103 (691)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 357765544444443 799999999999999999986
No 211
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=47.06 E-value=83 Score=35.83 Aligned_cols=46 Identities=11% Similarity=0.156 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 006826 433 EIRMAELEEDMREAEAECQNVRNQIKEVESLLSEKKKLFSAACQSL 478 (630)
Q Consensus 433 ~~~i~~L~~el~~l~~e~~~l~~qi~~~e~~l~e~~~~~~~~~~~l 478 (630)
+....+|++++..++.|++.+..+.+.+++.+++.+..+......+
T Consensus 75 Q~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 75 QVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777776666666666666666665555555444444
No 212
>PRK04325 hypothetical protein; Provisional
Probab=46.92 E-value=1.3e+02 Score=25.59 Aligned_cols=46 Identities=17% Similarity=0.172 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 006826 433 EIRMAELEEDMREAEAECQNVRNQIKEVESLLSEKKKLFSAACQSL 478 (630)
Q Consensus 433 ~~~i~~L~~el~~l~~e~~~l~~qi~~~e~~l~e~~~~~~~~~~~l 478 (630)
+.+|.+|+.++.-.+.-++.|.+.+...+..+...++.+......+
T Consensus 8 e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl 53 (74)
T PRK04325 8 EDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQM 53 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777777777777777777777766666666665555544444
No 213
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=46.81 E-value=28 Score=33.99 Aligned_cols=39 Identities=26% Similarity=0.376 Sum_probs=29.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Q 006826 45 NVVPEQQKNELEQSIINLEGEIVELRLKKRRLD----EKRREA 83 (630)
Q Consensus 45 ~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~----~~Rr~l 83 (630)
..|-|.++.+|+.++..+++||..|++-+...+ ..||+|
T Consensus 24 ~~LsEeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 24 EGLSEEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 455688999999999999999999887764433 345555
No 214
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=46.72 E-value=10 Score=43.04 Aligned_cols=46 Identities=28% Similarity=0.364 Sum_probs=27.6
Q ss_pred EEEeceeeCCCCChhhHHHhhHHHHHHhhc-------C--cceeEEecccCCCCcceee
Q 006826 132 EFGFDKVFNQAASQEDVFVEVEPILRSALD-------G--HNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 132 ~F~FD~VF~~~atQ~eVf~~v~plV~svl~-------G--yN~~IfaYGqTGSGKTyTM 181 (630)
..+||.|.+.+...++ +..++..+-. | ..-.|+-||++|+|||+..
T Consensus 51 ~~~~~di~g~~~~k~~----l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la 105 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEE----LMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLA 105 (495)
T ss_pred CCCHHHhCCHHHHHHH----HHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHH
Confidence 4678877655443333 3333332111 2 2335888999999999986
No 215
>PRK04328 hypothetical protein; Provisional
Probab=46.28 E-value=13 Score=38.29 Aligned_cols=27 Identities=37% Similarity=0.501 Sum_probs=21.8
Q ss_pred HHHHHhhcC---cceeEEecccCCCCccee
Q 006826 154 PILRSALDG---HNVCVLAYGQTGTGKTFT 180 (630)
Q Consensus 154 plV~svl~G---yN~~IfaYGqTGSGKTyT 180 (630)
+-++.++.| ....++.+|.+|||||..
T Consensus 10 ~~LD~lL~GGip~gs~ili~G~pGsGKT~l 39 (249)
T PRK04328 10 PGMDEILYGGIPERNVVLLSGGPGTGKSIF 39 (249)
T ss_pred hhHHHHhcCCCcCCcEEEEEcCCCCCHHHH
Confidence 356788876 588899999999999853
No 216
>PRK02793 phi X174 lysis protein; Provisional
Probab=46.27 E-value=1.3e+02 Score=25.32 Aligned_cols=46 Identities=20% Similarity=0.260 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 006826 433 EIRMAELEEDMREAEAECQNVRNQIKEVESLLSEKKKLFSAACQSL 478 (630)
Q Consensus 433 ~~~i~~L~~el~~l~~e~~~l~~qi~~~e~~l~e~~~~~~~~~~~l 478 (630)
+.+|.+|+.++.-.++-+..|.+.+-..+..+...++.+......+
T Consensus 7 e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl 52 (72)
T PRK02793 7 EARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKL 52 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777777777666666666655555444444
No 217
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=46.23 E-value=12 Score=40.70 Aligned_cols=30 Identities=33% Similarity=0.530 Sum_probs=23.4
Q ss_pred hhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 151 EVEPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 151 ~v~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
++..++..++.+. ..|+..|.||||||.+|
T Consensus 166 ~~~~~L~~~v~~~-~~ili~G~tGsGKTTll 195 (340)
T TIGR03819 166 GVARLLRAIVAAR-LAFLISGGTGSGKTTLL 195 (340)
T ss_pred HHHHHHHHHHhCC-CeEEEECCCCCCHHHHH
Confidence 3466777777654 67888899999999877
No 218
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=46.16 E-value=11 Score=43.85 Aligned_cols=27 Identities=41% Similarity=0.630 Sum_probs=21.6
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
..+|..+++|.|+ ++..+||+|||.+.
T Consensus 19 ~~~i~~il~g~dv--lv~~PTG~GKTl~y 45 (591)
T TIGR01389 19 EEIISHVLDGRDV--LVVMPTGGGKSLCY 45 (591)
T ss_pred HHHHHHHHcCCCE--EEEcCCCccHhHHH
Confidence 5677888999986 45569999999874
No 219
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=46.06 E-value=38 Score=37.15 Aligned_cols=47 Identities=30% Similarity=0.639 Sum_probs=35.0
Q ss_pred HHHHhhcCc---ceeEEecccCCCCcc---------------eeecCCC--CCC-CchhHHHHHHHHH
Q 006826 155 ILRSALDGH---NVCVLAYGQTGTGKT---------------FTMDGTS--DQP-GIVPRALEELFRQ 201 (630)
Q Consensus 155 lV~svl~Gy---N~~IfaYGqTGSGKT---------------yTM~G~~--~~~-GIIpRal~~LF~~ 201 (630)
.+.++-.|+ .-.+.-.|++|+||| ||+.|+| ++| +|||.-++..|..
T Consensus 76 ~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~Pm~e~PL~L~P~~~r~~~~~ 143 (358)
T PF08298_consen 76 YFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGCPMHEEPLHLFPKELRREFED 143 (358)
T ss_pred HHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCCccccChhhhCCHhHHHHHHH
Confidence 455555565 556888999999997 6777765 333 9999999988753
No 220
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=45.96 E-value=15 Score=44.32 Aligned_cols=37 Identities=24% Similarity=0.276 Sum_probs=24.4
Q ss_pred hhhHHHhhHHHHHHhhcCc------ceeEEecccCCCCcceee
Q 006826 145 QEDVFVEVEPILRSALDGH------NVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 145 Q~eVf~~v~plV~svl~Gy------N~~IfaYGqTGSGKTyTM 181 (630)
|++.-..+...|.....|. .+.++-+|+||+|||++.
T Consensus 463 Q~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lA 505 (758)
T PRK11034 463 QDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVT 505 (758)
T ss_pred cHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHH
Confidence 3444444444444444454 357899999999999986
No 221
>PRK00131 aroK shikimate kinase; Reviewed
Probab=45.82 E-value=9.1 Score=36.01 Aligned_cols=17 Identities=24% Similarity=0.296 Sum_probs=14.9
Q ss_pred eeEEecccCCCCcceee
Q 006826 165 VCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM 181 (630)
.+|+.+|.+|||||+.-
T Consensus 5 ~~i~l~G~~GsGKstla 21 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIG 21 (175)
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 47899999999999874
No 222
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=45.76 E-value=33 Score=35.46 Aligned_cols=36 Identities=17% Similarity=0.262 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 435 RMAELEEDMREAEAECQNVRNQIKEVESLLSEKKKL 470 (630)
Q Consensus 435 ~i~~L~~el~~l~~e~~~l~~qi~~~e~~l~e~~~~ 470 (630)
++..+..++..++..++.+..++...+..+.+.+..
T Consensus 57 e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~q 92 (251)
T PF11932_consen 57 EYRQLEREIENLEVYNEQLERQVASQEQELASLEQQ 92 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444333333
No 223
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=45.69 E-value=14 Score=42.36 Aligned_cols=27 Identities=33% Similarity=0.545 Sum_probs=21.0
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
...+..++.|.|+ ++..+||||||.+.
T Consensus 149 ~~aip~il~g~dv--iv~ApTGSGKTlay 175 (518)
T PLN00206 149 MQAIPAALSGRSL--LVSADTGSGKTASF 175 (518)
T ss_pred HHHHHHHhcCCCE--EEEecCCCCccHHH
Confidence 4567778899875 66679999999653
No 224
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=45.60 E-value=7.4 Score=42.97 Aligned_cols=38 Identities=32% Similarity=0.632 Sum_probs=26.0
Q ss_pred eeEEecccCCCCcceeecCCCCCCCchhHHHHHHHHHHhcCCCceEEEEEeEEEEec
Q 006826 165 VCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQAALDNSSSVTFSMSMLEVYM 221 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM~G~~~~~GIIpRal~~LF~~~~~~~~~~~~v~vS~lEIYn 221 (630)
..|+-||.+||||||++ +.+|+..+.. .|.++.+|-|.
T Consensus 31 S~~~iyG~sgTGKT~~~--------------r~~l~~~n~~-----~vw~n~~ecft 68 (438)
T KOG2543|consen 31 SIVHIYGHSGTGKTYLV--------------RQLLRKLNLE-----NVWLNCVECFT 68 (438)
T ss_pred eeEEEeccCCCchhHHH--------------HHHHhhcCCc-----ceeeehHHhcc
Confidence 34689999999999975 4555544332 35667777664
No 225
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=45.53 E-value=46 Score=36.74 Aligned_cols=15 Identities=60% Similarity=0.902 Sum_probs=13.0
Q ss_pred eEEecccCCCCccee
Q 006826 166 CVLAYGQTGTGKTFT 180 (630)
Q Consensus 166 ~IfaYGqTGSGKTyT 180 (630)
-|+-||+.|+|||-.
T Consensus 187 GVLLYGPPGTGKTLL 201 (406)
T COG1222 187 GVLLYGPPGTGKTLL 201 (406)
T ss_pred ceEeeCCCCCcHHHH
Confidence 489999999999853
No 226
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=45.51 E-value=7.8 Score=39.62 Aligned_cols=20 Identities=45% Similarity=0.570 Sum_probs=16.9
Q ss_pred ceeEEecccCCCCcceeecC
Q 006826 164 NVCVLAYGQTGTGKTFTMDG 183 (630)
Q Consensus 164 N~~IfaYGqTGSGKTyTM~G 183 (630)
...++-||..|+|||++.-+
T Consensus 12 ~~~~liyG~~G~GKtt~a~~ 31 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKY 31 (220)
T ss_pred CcEEEEECCCCCCHHHHHHh
Confidence 45699999999999998744
No 227
>PRK11637 AmiB activator; Provisional
Probab=45.16 E-value=73 Score=35.58 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=10.5
Q ss_pred CCCccccCCCCCCCCCCCCCCCCcc
Q 006826 575 KPRYGETNTPVAESPKGNGGLYSKT 599 (630)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (630)
-++||.... ...|+.|+|+.+
T Consensus 316 ~~~fg~~~~----~~~~~~Gi~i~~ 336 (428)
T PRK11637 316 LHRFGEQLQ----GELRWKGMVIGA 336 (428)
T ss_pred cCCCCCCCC----CCCCCCCEEeec
Confidence 355665422 123566666643
No 228
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=45.09 E-value=11 Score=44.35 Aligned_cols=17 Identities=47% Similarity=0.524 Sum_probs=14.8
Q ss_pred eEEecccCCCCcceeec
Q 006826 166 CVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM~ 182 (630)
.++..|++|+|||+|+.
T Consensus 175 ~~lI~GpPGTGKT~t~~ 191 (637)
T TIGR00376 175 LFLIHGPPGTGKTRTLV 191 (637)
T ss_pred eEEEEcCCCCCHHHHHH
Confidence 45689999999999985
No 229
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=44.92 E-value=3.6e+02 Score=27.59 Aligned_cols=66 Identities=24% Similarity=0.278 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhccCCchhhHHHhhcCcc
Q 006826 435 RMAELEEDMREAEAECQNVRNQIKEVESLLSEKKKLFSAACQSLEDEEKSFVSPKENLKEAAETPK 500 (630)
Q Consensus 435 ~i~~L~~el~~l~~e~~~l~~qi~~~e~~l~e~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~ 500 (630)
.+..|+.++..-..+++.|+.+++..|-.+.-..-...+....++..++..++-.+-++-+..-.+
T Consensus 75 ~m~~Lea~VEkrD~~IQqLqk~LK~aE~iLtta~fqA~qKLksi~~A~krpvsSEelIKyAHrIS~ 140 (272)
T KOG4552|consen 75 LMRTLEAHVEKRDEVIQQLQKNLKSAEVILTTACFQANQKLKSIKEAEKRPVSSEELIKYAHRISK 140 (272)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhh
Confidence 344455555555555556665555555544433333334444556666777777777775554333
No 230
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=44.63 E-value=13 Score=42.77 Aligned_cols=41 Identities=24% Similarity=0.433 Sum_probs=26.5
Q ss_pred EeceeeCCCCChhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 134 GFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 134 ~FD~VF~~~atQ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
.||.+++.+ ..- ..+...++.+...-|+-||++|+|||+.-
T Consensus 63 ~f~~iiGqs----~~i---~~l~~al~~~~~~~vLi~Ge~GtGKt~lA 103 (531)
T TIGR02902 63 SFDEIIGQE----EGI---KALKAALCGPNPQHVIIYGPPGVGKTAAA 103 (531)
T ss_pred CHHHeeCcH----HHH---HHHHHHHhCCCCceEEEECCCCCCHHHHH
Confidence 566666543 222 33333345566677888999999999753
No 231
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=44.54 E-value=9.5 Score=36.66 Aligned_cols=15 Identities=33% Similarity=0.554 Sum_probs=13.2
Q ss_pred EEecccCCCCcceee
Q 006826 167 VLAYGQTGTGKTFTM 181 (630)
Q Consensus 167 IfaYGqTGSGKTyTM 181 (630)
|+.+|..|||||+.-
T Consensus 2 i~i~G~pGsGKst~a 16 (183)
T TIGR01359 2 VFVLGGPGSGKGTQC 16 (183)
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999864
No 232
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=44.48 E-value=89 Score=33.32 Aligned_cols=41 Identities=17% Similarity=0.225 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006826 435 RMAELEEDMREAEAECQNVRNQIKEVESLLSEKKKLFSAAC 475 (630)
Q Consensus 435 ~i~~L~~el~~l~~e~~~l~~qi~~~e~~l~e~~~~~~~~~ 475 (630)
..+.+.-++..|++++++|++|..+++.++...+.++....
T Consensus 249 e~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~ 289 (294)
T KOG4571|consen 249 EKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVY 289 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888899999999999999888888888775543
No 233
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=44.46 E-value=15 Score=44.10 Aligned_cols=17 Identities=41% Similarity=0.442 Sum_probs=15.4
Q ss_pred eeEEecccCCCCcceee
Q 006826 165 VCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM 181 (630)
.+|.-.|+||+|||.|+
T Consensus 186 ~Vi~lVGpnGvGKTTTi 202 (767)
T PRK14723 186 GVLALVGPTGVGKTTTT 202 (767)
T ss_pred eEEEEECCCCCcHHHHH
Confidence 47888999999999998
No 234
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=44.35 E-value=8 Score=31.76 Aligned_cols=15 Identities=33% Similarity=0.598 Sum_probs=12.7
Q ss_pred EEecccCCCCcceee
Q 006826 167 VLAYGQTGTGKTFTM 181 (630)
Q Consensus 167 IfaYGqTGSGKTyTM 181 (630)
.+-+|++|||||..|
T Consensus 26 tli~G~nGsGKSTll 40 (62)
T PF13555_consen 26 TLITGPNGSGKSTLL 40 (62)
T ss_pred EEEECCCCCCHHHHH
Confidence 466799999999877
No 235
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=44.29 E-value=13 Score=39.42 Aligned_cols=37 Identities=27% Similarity=0.241 Sum_probs=23.5
Q ss_pred CCCChhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceeec
Q 006826 141 QAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 141 ~~atQ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM~ 182 (630)
+...|.++-..| .+.+-+|.+ ++.-.+||+|||.+..
T Consensus 9 ~r~~Q~~~m~~v---~~~~~~~~~--~~~eapTGtGKTl~~L 45 (289)
T smart00489 9 PYPIQYEFMEEL---KRVLDRGKI--GILESPTGTGKTLSLL 45 (289)
T ss_pred CCHHHHHHHHHH---HHHHHcCCc--EEEECCCCcchhHHHH
Confidence 345565555444 334446654 4666799999999874
No 236
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=44.29 E-value=13 Score=39.42 Aligned_cols=37 Identities=27% Similarity=0.241 Sum_probs=23.5
Q ss_pred CCCChhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceeec
Q 006826 141 QAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 141 ~~atQ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM~ 182 (630)
+...|.++-..| .+.+-+|.+ ++.-.+||+|||.+..
T Consensus 9 ~r~~Q~~~m~~v---~~~~~~~~~--~~~eapTGtGKTl~~L 45 (289)
T smart00488 9 PYPIQYEFMEEL---KRVLDRGKI--GILESPTGTGKTLSLL 45 (289)
T ss_pred CCHHHHHHHHHH---HHHHHcCCc--EEEECCCCcchhHHHH
Confidence 345565555444 334446654 4666799999999874
No 237
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=44.27 E-value=12 Score=36.94 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=18.8
Q ss_pred HHhhcCc---ceeEEecccCCCCcceee
Q 006826 157 RSALDGH---NVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 157 ~svl~Gy---N~~IfaYGqTGSGKTyTM 181 (630)
+.++.|- ...+.-||++|||||...
T Consensus 2 D~~l~GGi~~g~i~~i~G~~GsGKT~l~ 29 (209)
T TIGR02237 2 DELLGGGVERGTITQIYGPPGSGKTNIC 29 (209)
T ss_pred hhhhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 3455443 667899999999999764
No 238
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=44.25 E-value=13 Score=37.15 Aligned_cols=25 Identities=40% Similarity=0.554 Sum_probs=19.8
Q ss_pred HHHhhcC---cceeEEecccCCCCccee
Q 006826 156 LRSALDG---HNVCVLAYGQTGTGKTFT 180 (630)
Q Consensus 156 V~svl~G---yN~~IfaYGqTGSGKTyT 180 (630)
++..+.| .+..++.+|++|||||..
T Consensus 8 LD~~l~GGip~gs~~li~G~~GsGKT~l 35 (226)
T PF06745_consen 8 LDELLGGGIPKGSVVLISGPPGSGKTTL 35 (226)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCcHHH
Confidence 5666744 478899999999999864
No 239
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=44.18 E-value=14 Score=43.32 Aligned_cols=27 Identities=30% Similarity=0.537 Sum_probs=20.6
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
...|..++.|.++.+. ++||||||.+.
T Consensus 31 ~~ai~~il~g~dvlv~--apTGsGKTl~y 57 (607)
T PRK11057 31 QEIIDAVLSGRDCLVV--MPTGGGKSLCY 57 (607)
T ss_pred HHHHHHHHcCCCEEEE--cCCCchHHHHH
Confidence 4566778899887554 69999999753
No 240
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=44.10 E-value=15 Score=43.37 Aligned_cols=27 Identities=37% Similarity=0.596 Sum_probs=21.0
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
...|..++.|.+ |++.+|||||||.+.
T Consensus 34 ~~ai~~ll~g~d--vl~~ApTGsGKT~af 60 (629)
T PRK11634 34 AECIPHLLNGRD--VLGMAQTGSGKTAAF 60 (629)
T ss_pred HHHHHHHHcCCC--EEEEcCCCCcHHHHH
Confidence 345667788877 577789999999874
No 241
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=43.96 E-value=12 Score=41.55 Aligned_cols=37 Identities=35% Similarity=0.537 Sum_probs=27.1
Q ss_pred ChhhHHHhhHHHHHHhhcCcceeEEecccCCCCccee
Q 006826 144 SQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFT 180 (630)
Q Consensus 144 tQ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyT 180 (630)
.|+.+..+-.++=.-+-.|.=...+-||+.|+|||..
T Consensus 28 GQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTl 64 (436)
T COG2256 28 GQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTL 64 (436)
T ss_pred ChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHH
Confidence 4666665545555555567777888899999999975
No 242
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=43.92 E-value=12 Score=40.93 Aligned_cols=16 Identities=31% Similarity=0.466 Sum_probs=14.0
Q ss_pred EEecccCCCCcceeec
Q 006826 167 VLAYGQTGTGKTFTMD 182 (630)
Q Consensus 167 IfaYGqTGSGKTyTM~ 182 (630)
++..|+||||||+++.
T Consensus 2 ~lv~g~tGsGKt~~~v 17 (384)
T cd01126 2 VLVFAPTRSGKGVGFV 17 (384)
T ss_pred eeEecCCCCCCccEEE
Confidence 5789999999999873
No 243
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=43.61 E-value=9.8 Score=35.36 Aligned_cols=15 Identities=27% Similarity=0.558 Sum_probs=12.8
Q ss_pred EEecccCCCCcceee
Q 006826 167 VLAYGQTGTGKTFTM 181 (630)
Q Consensus 167 IfaYGqTGSGKTyTM 181 (630)
|+..|..|||||+.-
T Consensus 2 i~l~G~~GsGKST~a 16 (150)
T cd02021 2 IVVMGVSGSGKSTVG 16 (150)
T ss_pred EEEEcCCCCCHHHHH
Confidence 677899999999864
No 244
>PF13173 AAA_14: AAA domain
Probab=43.48 E-value=8.8 Score=35.06 Aligned_cols=16 Identities=31% Similarity=0.544 Sum_probs=14.4
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
.++-+|+.|+|||+.|
T Consensus 4 ~~~l~G~R~vGKTtll 19 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLL 19 (128)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5788999999999987
No 245
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=43.36 E-value=15 Score=36.71 Aligned_cols=28 Identities=29% Similarity=0.396 Sum_probs=22.1
Q ss_pred HHHHHhhcC---cceeEEecccCCCCcceee
Q 006826 154 PILRSALDG---HNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 154 plV~svl~G---yN~~IfaYGqTGSGKTyTM 181 (630)
+-++.++.| ...++.-+|++|||||..+
T Consensus 6 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (235)
T cd01123 6 KALDELLGGGIETGSITEIFGEFGSGKTQLC 36 (235)
T ss_pred hhhHhhccCCCCCCeEEEEECCCCCCHHHHH
Confidence 456777775 4667889999999999865
No 246
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=43.19 E-value=10 Score=39.93 Aligned_cols=21 Identities=24% Similarity=0.563 Sum_probs=19.0
Q ss_pred cCcceeEEecccCCCCcceee
Q 006826 161 DGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 161 ~GyN~~IfaYGqTGSGKTyTM 181 (630)
.|++..|+..|++|+|||..+
T Consensus 1 ~g~~f~I~vvG~sg~GKSTli 21 (276)
T cd01850 1 KGFQFNIMVVGESGLGKSTFI 21 (276)
T ss_pred CCcEEEEEEEcCCCCCHHHHH
Confidence 489999999999999999865
No 247
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=43.12 E-value=17 Score=43.56 Aligned_cols=37 Identities=24% Similarity=0.272 Sum_probs=22.7
Q ss_pred hhhHHHhhHHHHHHhhcCc------ceeEEecccCCCCcceee
Q 006826 145 QEDVFVEVEPILRSALDGH------NVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 145 Q~eVf~~v~plV~svl~Gy------N~~IfaYGqTGSGKTyTM 181 (630)
|+++-+.+...|....-|. .+.++-+|+||+|||++.
T Consensus 459 Q~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA 501 (731)
T TIGR02639 459 QDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELA 501 (731)
T ss_pred cHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHH
Confidence 3344444433344433444 246788999999999876
No 248
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=42.95 E-value=40 Score=33.60 Aligned_cols=56 Identities=27% Similarity=0.383 Sum_probs=42.3
Q ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhhhhhcCCCCE
Q 006826 39 LICTDVNVVPEQQKNELEQSIINLEGEIVELRLKKRRL-----DEKRREALNKILDIKGCI 94 (630)
Q Consensus 39 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~-----~~~Rr~l~n~~~elkG~I 94 (630)
........|-+.++.+|..++..+++||..|+.-|... |..||-=++.+.||+-||
T Consensus 33 ~s~s~~~~LSe~Ekeelr~EL~kvEeEI~TLrqVLaAKerH~~ELKRKLGlt~~~EL~qni 93 (208)
T KOG4010|consen 33 ASASEFEALSEEEKEELRTELAKVEEEIVTLRQVLAAKERHAAELKRKLGLTVLKELKQNI 93 (208)
T ss_pred hhhhHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 33445566778889999999999999999998766433 446676677888888765
No 249
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=42.86 E-value=17 Score=40.75 Aligned_cols=17 Identities=47% Similarity=0.700 Sum_probs=15.2
Q ss_pred eeEEecccCCCCcceee
Q 006826 165 VCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM 181 (630)
.-++.+|+||||||.++
T Consensus 45 ~h~lvig~tgSGKt~~~ 61 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSF 61 (469)
T ss_pred eEEEEEeCCCCCcccee
Confidence 56789999999999988
No 250
>PRK07261 topology modulation protein; Provisional
Probab=42.71 E-value=10 Score=36.68 Aligned_cols=15 Identities=27% Similarity=0.490 Sum_probs=12.9
Q ss_pred EEecccCCCCcceee
Q 006826 167 VLAYGQTGTGKTFTM 181 (630)
Q Consensus 167 IfaYGqTGSGKTyTM 181 (630)
|+..|.+|||||...
T Consensus 3 i~i~G~~GsGKSTla 17 (171)
T PRK07261 3 IAIIGYSGSGKSTLA 17 (171)
T ss_pred EEEEcCCCCCHHHHH
Confidence 678899999999765
No 251
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.24 E-value=2.1e+02 Score=24.21 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 432 REIRMAELEEDMREAEAECQNVRNQI 457 (630)
Q Consensus 432 ~~~~i~~L~~el~~l~~e~~~l~~qi 457 (630)
.+..|.+|+++...+..|.+.++...
T Consensus 23 LQmEieELKEknn~l~~e~q~~q~~r 48 (79)
T COG3074 23 LQMEIEELKEKNNSLSQEVQNAQHQR 48 (79)
T ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHH
Confidence 33444444444444444444444333
No 252
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=42.07 E-value=14 Score=39.42 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=20.0
Q ss_pred hhcCcceeEEecccCCCCcceeec
Q 006826 159 ALDGHNVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 159 vl~GyN~~IfaYGqTGSGKTyTM~ 182 (630)
--..-+..++-||+.|||||.+|.
T Consensus 18 ~~~~~~~r~vL~G~~GsGKS~~L~ 41 (309)
T PF10236_consen 18 DKSSKNNRYVLTGERGSGKSVLLA 41 (309)
T ss_pred cccCCceEEEEECCCCCCHHHHHH
Confidence 345677889999999999999984
No 253
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=42.02 E-value=14 Score=42.49 Aligned_cols=45 Identities=24% Similarity=0.285 Sum_probs=30.2
Q ss_pred EEEeceeeCCCCChhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 132 EFGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 132 ~F~FD~VF~~~atQ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
.+.||.+++.+..=..+.+ .+..+ ...+..|+-+|.+||||++.-
T Consensus 192 ~~~~~~liG~s~~~~~~~~----~~~~~-a~~~~pvli~Ge~GtGK~~lA 236 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVD----QARVV-ARSNSTVLLRGESGTGKELIA 236 (534)
T ss_pred cCccCceEECCHHHHHHHH----HHHHH-hCcCCCEEEECCCCccHHHHH
Confidence 3688888876543333333 33332 256778999999999999764
No 254
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=41.90 E-value=9.1 Score=42.48 Aligned_cols=17 Identities=41% Similarity=0.606 Sum_probs=14.4
Q ss_pred eeEEecccCCCCcceee
Q 006826 165 VCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM 181 (630)
--++.+|+||||||..|
T Consensus 43 ~h~~i~g~tGsGKt~~i 59 (410)
T cd01127 43 AHTMIIGTTGTGKTTQI 59 (410)
T ss_pred ccEEEEcCCCCCHHHHH
Confidence 35788999999999865
No 255
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=41.85 E-value=19 Score=43.67 Aligned_cols=33 Identities=24% Similarity=0.237 Sum_probs=24.0
Q ss_pred hHHHhhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 147 DVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 147 eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
-||.....+++.+-++- .|+..|+||||||..+
T Consensus 5 Pi~~~~~~i~~~l~~~~--~vvv~A~TGSGKTt~~ 37 (812)
T PRK11664 5 PVAAVLPELLTALKTAP--QVLLKAPTGAGKSTWL 37 (812)
T ss_pred CHHHHHHHHHHHHHhCC--CEEEEcCCCCCHHHHH
Confidence 35655566777765554 3677899999999876
No 256
>PRK08118 topology modulation protein; Reviewed
Probab=41.74 E-value=11 Score=36.43 Aligned_cols=14 Identities=29% Similarity=0.610 Sum_probs=12.2
Q ss_pred EEecccCCCCccee
Q 006826 167 VLAYGQTGTGKTFT 180 (630)
Q Consensus 167 IfaYGqTGSGKTyT 180 (630)
|+..|+.|||||+.
T Consensus 4 I~I~G~~GsGKSTl 17 (167)
T PRK08118 4 IILIGSGGSGKSTL 17 (167)
T ss_pred EEEECCCCCCHHHH
Confidence 78899999999953
No 257
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=41.59 E-value=19 Score=40.42 Aligned_cols=17 Identities=41% Similarity=0.616 Sum_probs=14.7
Q ss_pred eeEEecccCCCCcceee
Q 006826 165 VCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM 181 (630)
..|+..|++|+|||.|.
T Consensus 224 ~vi~lvGptGvGKTTta 240 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSI 240 (432)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45777899999999997
No 258
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=41.55 E-value=11 Score=36.33 Aligned_cols=15 Identities=33% Similarity=0.585 Sum_probs=13.0
Q ss_pred EEecccCCCCcceee
Q 006826 167 VLAYGQTGTGKTFTM 181 (630)
Q Consensus 167 IfaYGqTGSGKTyTM 181 (630)
|+.+|+.|||||+..
T Consensus 2 I~i~G~pGsGKst~a 16 (194)
T cd01428 2 ILLLGPPGSGKGTQA 16 (194)
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999654
No 259
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=41.53 E-value=2.2e+02 Score=24.12 Aligned_cols=24 Identities=13% Similarity=0.256 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 433 EIRMAELEEDMREAEAECQNVRNQ 456 (630)
Q Consensus 433 ~~~i~~L~~el~~l~~e~~~l~~q 456 (630)
+.+|+.+-..|..|+.++..|+.+
T Consensus 10 E~ki~~aveti~~Lq~e~eeLke~ 33 (72)
T PF06005_consen 10 EEKIQQAVETIALLQMENEELKEK 33 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 260
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=41.43 E-value=18 Score=42.81 Aligned_cols=36 Identities=22% Similarity=0.504 Sum_probs=26.7
Q ss_pred hhHHHhhHHHHHHhh-cCcceeEEecccCCCCcceee
Q 006826 146 EDVFVEVEPILRSAL-DGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 146 ~eVf~~v~plV~svl-~GyN~~IfaYGqTGSGKTyTM 181 (630)
-.||.-.......++ .|.|-||+.-|.+|||||.|+
T Consensus 67 PHifavA~~Ay~~m~~~~~~QsIiisGESGsGKTet~ 103 (653)
T cd01379 67 PHIFAIADAAYQSLVTYNQDQCIVISGESGSGKTESA 103 (653)
T ss_pred CcHHHHHHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 347754433344443 589999999999999999997
No 261
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=41.10 E-value=19 Score=39.21 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=21.1
Q ss_pred HHHhhcCcceeEEecccCCCCcceee
Q 006826 156 LRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 156 V~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
++.+.+|.+..++..++||||||...
T Consensus 6 ~~~~~~~~~~~~~i~apTGsGKT~~~ 31 (357)
T TIGR03158 6 FEALQSKDADIIFNTAPTGAGKTLAW 31 (357)
T ss_pred HHHHHcCCCCEEEEECCCCCCHHHHH
Confidence 35667788777888899999999874
No 262
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=40.73 E-value=18 Score=43.58 Aligned_cols=36 Identities=19% Similarity=0.422 Sum_probs=27.6
Q ss_pred hhHHHhhHHHHHHhh-cCcceeEEecccCCCCcceee
Q 006826 146 EDVFVEVEPILRSAL-DGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 146 ~eVf~~v~plV~svl-~GyN~~IfaYGqTGSGKTyTM 181 (630)
-.||.-.......++ .|.|-||+.-|.+|||||.|.
T Consensus 67 PHifaiA~~Ay~~m~~~~~~QsIiiSGESGAGKTe~t 103 (767)
T cd01386 67 PHIYSLAQTAYRALLETRRDQSIIFLGRSGAGKTTSC 103 (767)
T ss_pred CCHHHHHHHHHHHHHHcCCCceEEEecCCCCCcHHHH
Confidence 457765544444444 699999999999999999986
No 263
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=40.27 E-value=10 Score=36.31 Aligned_cols=18 Identities=28% Similarity=0.571 Sum_probs=14.6
Q ss_pred eeEEecccCCCCcceeec
Q 006826 165 VCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM~ 182 (630)
...+-||.+|+|||..|.
T Consensus 20 g~~vi~G~Ng~GKStil~ 37 (202)
T PF13476_consen 20 GLNVIYGPNGSGKSTILE 37 (202)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 355678999999999873
No 264
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=40.25 E-value=11 Score=35.73 Aligned_cols=14 Identities=29% Similarity=0.544 Sum_probs=11.3
Q ss_pred EEecccCCCCccee
Q 006826 167 VLAYGQTGTGKTFT 180 (630)
Q Consensus 167 IfaYGqTGSGKTyT 180 (630)
|+..|++|||||+.
T Consensus 1 i~l~G~~GsGKSTl 14 (163)
T TIGR01313 1 FVLMGVAGSGKSTI 14 (163)
T ss_pred CEEECCCCCCHHHH
Confidence 45679999999865
No 265
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=40.25 E-value=19 Score=42.73 Aligned_cols=39 Identities=26% Similarity=0.358 Sum_probs=26.6
Q ss_pred CCCCChhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 140 NQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 140 ~~~atQ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
.+..-|+.+..++ ....-.++..-++..|+||||||...
T Consensus 261 ~lt~~Q~~ai~~I---~~d~~~~~~~~~Ll~~~TGSGKT~va 299 (681)
T PRK10917 261 ELTGAQKRVVAEI---LADLASPKPMNRLLQGDVGSGKTVVA 299 (681)
T ss_pred CCCHHHHHHHHHH---HHhhhccCCceEEEECCCCCcHHHHH
Confidence 4666677666554 22333455566899999999999865
No 266
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=40.22 E-value=12 Score=34.57 Aligned_cols=16 Identities=31% Similarity=0.418 Sum_probs=13.7
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
+|+.+|..|||||+.-
T Consensus 1 ~i~l~G~~GsGKstla 16 (154)
T cd00464 1 NIVLIGMMGAGKTTVG 16 (154)
T ss_pred CEEEEcCCCCCHHHHH
Confidence 4788999999999864
No 267
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=40.12 E-value=10 Score=43.21 Aligned_cols=17 Identities=41% Similarity=0.427 Sum_probs=15.3
Q ss_pred eeEEecccCCCCcceee
Q 006826 165 VCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM 181 (630)
..|.-.|+||+|||.|+
T Consensus 257 ~Vi~LvGpnGvGKTTTi 273 (484)
T PRK06995 257 GVFALMGPTGVGKTTTT 273 (484)
T ss_pred cEEEEECCCCccHHHHH
Confidence 46788899999999998
No 268
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=39.94 E-value=19 Score=38.37 Aligned_cols=35 Identities=29% Similarity=0.371 Sum_probs=22.6
Q ss_pred ChhhHHHhhHHHHHHhhcCc-ceeEEecccCCCCcceee
Q 006826 144 SQEDVFVEVEPILRSALDGH-NVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 144 tQ~eVf~~v~plV~svl~Gy-N~~IfaYGqTGSGKTyTM 181 (630)
.|+.+.+.+.. .+-.|. .-+++-||+.|+|||.+.
T Consensus 18 g~~~~~~~l~~---~~~~~~~~~~~Ll~G~~G~GKt~~a 53 (355)
T TIGR02397 18 GQEHIVQTLKN---AIKNGRIAHAYLFSGPRGTGKTSIA 53 (355)
T ss_pred CcHHHHHHHHH---HHHcCCCCeEEEEECCCCCCHHHHH
Confidence 34555444433 333453 456889999999999876
No 269
>CHL00176 ftsH cell division protein; Validated
Probab=39.80 E-value=16 Score=43.22 Aligned_cols=46 Identities=26% Similarity=0.272 Sum_probs=27.3
Q ss_pred EEEeceeeCCCCChhhHHHhhHHHHHHhhcC---------cceeEEecccCCCCcceee
Q 006826 132 EFGFDKVFNQAASQEDVFVEVEPILRSALDG---------HNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 132 ~F~FD~VF~~~atQ~eVf~~v~plV~svl~G---------yN~~IfaYGqTGSGKTyTM 181 (630)
.++||.|.+. +++-+++..++..+-+. ....|+-||++|+|||+..
T Consensus 179 ~~~f~dv~G~----~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 179 GITFRDIAGI----EEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLA 233 (638)
T ss_pred CCCHHhccCh----HHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 3566666544 34444444444332222 1235899999999999986
No 270
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=39.64 E-value=22 Score=43.49 Aligned_cols=37 Identities=30% Similarity=0.397 Sum_probs=24.5
Q ss_pred hhhHHHhhHHHHHHhhcCcc------eeEEecccCCCCcceee
Q 006826 145 QEDVFVEVEPILRSALDGHN------VCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 145 Q~eVf~~v~plV~svl~GyN------~~IfaYGqTGSGKTyTM 181 (630)
|++.-..|...|..+..|.+ +.++-.|+||+|||++.
T Consensus 571 Q~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA 613 (852)
T TIGR03345 571 QDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETA 613 (852)
T ss_pred hHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHH
Confidence 34444445444555545543 46888999999999986
No 271
>PRK13767 ATP-dependent helicase; Provisional
Probab=39.63 E-value=16 Score=44.72 Aligned_cols=27 Identities=30% Similarity=0.436 Sum_probs=20.0
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
...+..+++|.|+.|. .+||||||...
T Consensus 38 ~~Ai~~il~g~nvli~--APTGSGKTlaa 64 (876)
T PRK13767 38 RYAIPLIHEGKNVLIS--SPTGSGKTLAA 64 (876)
T ss_pred HHHHHHHHcCCCEEEE--CCCCCcHHHHH
Confidence 3445566889987664 59999999874
No 272
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=39.59 E-value=13 Score=34.01 Aligned_cols=15 Identities=27% Similarity=0.485 Sum_probs=12.7
Q ss_pred EEecccCCCCcceee
Q 006826 167 VLAYGQTGTGKTFTM 181 (630)
Q Consensus 167 IfaYGqTGSGKTyTM 181 (630)
|+..|++|||||..-
T Consensus 2 I~i~G~~GsGKst~a 16 (147)
T cd02020 2 IAIDGPAGSGKSTVA 16 (147)
T ss_pred EEEECCCCCCHHHHH
Confidence 677899999999854
No 273
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=39.55 E-value=21 Score=41.52 Aligned_cols=27 Identities=30% Similarity=0.380 Sum_probs=18.5
Q ss_pred HHHHhhcCcceeEEecccCCCCcceeec
Q 006826 155 ILRSALDGHNVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 155 lV~svl~GyN~~IfaYGqTGSGKTyTM~ 182 (630)
.|.-++.-. ...+-.|+.|+|||||+.
T Consensus 193 Av~~~~~~k-~l~~I~GPPGTGKT~Tlv 219 (649)
T KOG1803|consen 193 AVSFAINNK-DLLIIHGPPGTGKTRTLV 219 (649)
T ss_pred HHHHHhccC-CceEeeCCCCCCceeeHH
Confidence 333333333 456778999999999983
No 274
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=39.37 E-value=32 Score=36.66 Aligned_cols=28 Identities=36% Similarity=0.463 Sum_probs=21.7
Q ss_pred cceeEEecccCCCCcceeecCCCCCCCchhHHHHHHHH
Q 006826 163 HNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFR 200 (630)
Q Consensus 163 yN~~IfaYGqTGSGKTyTM~G~~~~~GIIpRal~~LF~ 200 (630)
..+||++.|..|||||.-| +|...+|+.
T Consensus 18 ~p~~ilVvGMAGSGKTTF~----------QrL~~hl~~ 45 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFM----------QRLNSHLHA 45 (366)
T ss_pred CCcEEEEEecCCCCchhHH----------HHHHHHHhh
Confidence 4679999999999999765 456665554
No 275
>PRK05580 primosome assembly protein PriA; Validated
Probab=39.18 E-value=18 Score=42.99 Aligned_cols=38 Identities=26% Similarity=0.219 Sum_probs=23.8
Q ss_pred eCCCCChhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceeec
Q 006826 139 FNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 139 F~~~atQ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM~ 182 (630)
+.....|.++++.+. ... ++ ..++.+|+||||||.+..
T Consensus 143 ~~Lt~~Q~~ai~~i~---~~~--~~-~~~Ll~~~TGSGKT~v~l 180 (679)
T PRK05580 143 PTLNPEQAAAVEAIR---AAA--GF-SPFLLDGVTGSGKTEVYL 180 (679)
T ss_pred CCCCHHHHHHHHHHH---hcc--CC-CcEEEECCCCChHHHHHH
Confidence 344556666655442 111 33 448899999999997753
No 276
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=39.14 E-value=19 Score=36.27 Aligned_cols=28 Identities=32% Similarity=0.426 Sum_probs=21.1
Q ss_pred HHHHHhhcC---cceeEEecccCCCCcceee
Q 006826 154 PILRSALDG---HNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 154 plV~svl~G---yN~~IfaYGqTGSGKTyTM 181 (630)
+-++.++.| ...+++.+|.+|||||+-.
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~ 42 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLS 42 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHH
Confidence 456777764 2677888899999998764
No 277
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=38.93 E-value=11 Score=45.34 Aligned_cols=19 Identities=37% Similarity=0.656 Sum_probs=15.7
Q ss_pred ceeEEecccCCCCcceeec
Q 006826 164 NVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 164 N~~IfaYGqTGSGKTyTM~ 182 (630)
|.-++..|.||||||++|.
T Consensus 430 n~n~~I~G~tGsGKS~~~~ 448 (797)
T TIGR02746 430 NYNIAVVGGSGAGKSFFMQ 448 (797)
T ss_pred ccceEEEcCCCCCHHHHHH
Confidence 4456888999999999983
No 278
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=38.91 E-value=20 Score=42.18 Aligned_cols=43 Identities=23% Similarity=0.394 Sum_probs=30.2
Q ss_pred EEEeceeeCCCCChhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 132 EFGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 132 ~F~FD~VF~~~atQ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
.-+||.+++. ..... .++..+..++...++-||++|+|||+..
T Consensus 150 p~~~~~iiGq----s~~~~---~l~~~ia~~~~~~vlL~Gp~GtGKTTLA 192 (615)
T TIGR02903 150 PRAFSEIVGQ----ERAIK---ALLAKVASPFPQHIILYGPPGVGKTTAA 192 (615)
T ss_pred cCcHHhceeC----cHHHH---HHHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 3477777643 33333 3455556678878899999999999876
No 279
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=38.85 E-value=1.4e+02 Score=31.24 Aligned_cols=29 Identities=21% Similarity=0.359 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 427 DLKKRREIRMAELEEDMREAEAECQNVRN 455 (630)
Q Consensus 427 ~~~~~~~~~i~~L~~el~~l~~e~~~l~~ 455 (630)
++.+..+.++.+++.+.+.++.+++.|+.
T Consensus 45 E~EaelesqL~q~etrnrdl~t~nqrl~~ 73 (333)
T KOG1853|consen 45 EIEAELESQLDQLETRNRDLETRNQRLTT 73 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555666666666666665555543
No 280
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=38.77 E-value=14 Score=42.69 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=27.8
Q ss_pred eEEecccCCCCcceeecC---CC---CCCCchhHHHHHHHHHHh
Q 006826 166 CVLAYGQTGTGKTFTMDG---TS---DQPGIVPRALEELFRQAA 203 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM~G---~~---~~~GIIpRal~~LF~~~~ 203 (630)
.||..|+|.|||||--.- .. --.|=+-....++|+..+
T Consensus 193 Ii~H~GPTNSGKTy~ALqrl~~aksGvycGPLrLLA~EV~~r~n 236 (700)
T KOG0953|consen 193 IIMHVGPTNSGKTYRALQRLKSAKSGVYCGPLRLLAHEVYDRLN 236 (700)
T ss_pred EEEEeCCCCCchhHHHHHHHhhhccceecchHHHHHHHHHHHhh
Confidence 499999999999998632 21 224667777888998653
No 281
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=38.60 E-value=1.1e+02 Score=27.30 Aligned_cols=32 Identities=16% Similarity=0.442 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 435 RMAELEEDMREAEAECQNVRNQIKEVESLLSE 466 (630)
Q Consensus 435 ~i~~L~~el~~l~~e~~~l~~qi~~~e~~l~e 466 (630)
++..++.++..++..+..+..++.+++..+.+
T Consensus 71 ~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 71 RLETIELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444433
No 282
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.58 E-value=15 Score=42.22 Aligned_cols=42 Identities=36% Similarity=0.363 Sum_probs=26.2
Q ss_pred EeceeeCCCCChhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 134 GFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 134 ~FD~VF~~~atQ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
.||.|. .|+.+...+...+.+ ......++-||+.|+|||.+.
T Consensus 12 ~~~dvv----Gq~~v~~~L~~~i~~--~~l~ha~Lf~GppGtGKTTlA 53 (504)
T PRK14963 12 TFDEVV----GQEHVKEVLLAALRQ--GRLGHAYLFSGPRGVGKTTTA 53 (504)
T ss_pred CHHHhc----ChHHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHH
Confidence 455554 456665555444443 123345689999999999876
No 283
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=38.54 E-value=21 Score=33.62 Aligned_cols=20 Identities=20% Similarity=0.255 Sum_probs=16.1
Q ss_pred CcceeEEecccCCCCcceee
Q 006826 162 GHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 162 GyN~~IfaYGqTGSGKTyTM 181 (630)
+....|...|++|.||+..+
T Consensus 100 ~~~~~v~~~G~~nvGKStli 119 (157)
T cd01858 100 KKQISVGFIGYPNVGKSSII 119 (157)
T ss_pred ccceEEEEEeCCCCChHHHH
Confidence 34566777999999999876
No 284
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=38.46 E-value=1.4e+02 Score=31.28 Aligned_cols=40 Identities=15% Similarity=0.274 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006826 438 ELEEDMREAEAECQNVRNQIKEVESLLSEKKKLFSAACQS 477 (630)
Q Consensus 438 ~L~~el~~l~~e~~~l~~qi~~~e~~l~e~~~~~~~~~~~ 477 (630)
+|+.+|..++.|+..||-+++++...+++.++.-......
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~d 97 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQ 97 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555566566555555555554444443333333
No 285
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=38.40 E-value=1e+02 Score=35.81 Aligned_cols=9 Identities=44% Similarity=0.759 Sum_probs=5.4
Q ss_pred EEecCCCcc
Q 006826 322 MVDLGGSER 330 (630)
Q Consensus 322 lVDLAGSEr 330 (630)
.+|+.|+-+
T Consensus 6 ~l~~gG~gn 14 (907)
T KOG2264|consen 6 ALKLGGSGN 14 (907)
T ss_pred eeecCCCCC
Confidence 456666655
No 286
>PRK00846 hypothetical protein; Provisional
Probab=38.30 E-value=2.3e+02 Score=24.45 Aligned_cols=48 Identities=17% Similarity=0.230 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 006826 433 EIRMAELEEDMREAEAECQNVRNQIKEVESLLSEKKKLFSAACQSLED 480 (630)
Q Consensus 433 ~~~i~~L~~el~~l~~e~~~l~~qi~~~e~~l~e~~~~~~~~~~~l~~ 480 (630)
+.+|.+|+.++.-.+.-++.|.+.+...+..+...+..+......+.+
T Consensus 12 e~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~ 59 (77)
T PRK00846 12 EARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 59 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777766666666666555555554444443
No 287
>PTZ00110 helicase; Provisional
Probab=38.21 E-value=18 Score=41.73 Aligned_cols=26 Identities=31% Similarity=0.535 Sum_probs=20.1
Q ss_pred HHHHHhhcCcceeEEecccCCCCcceee
Q 006826 154 PILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 154 plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
..+..++.|.++ ++.++||||||.+.
T Consensus 159 ~aip~~l~G~dv--I~~ApTGSGKTlay 184 (545)
T PTZ00110 159 QGWPIALSGRDM--IGIAETGSGKTLAF 184 (545)
T ss_pred HHHHHHhcCCCE--EEEeCCCChHHHHH
Confidence 455678899977 45679999999864
No 288
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=38.00 E-value=1.2e+02 Score=23.72 Aligned_cols=31 Identities=32% Similarity=0.571 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 432 REIRMAELEEDMREAEAECQNVRNQIKEVES 462 (630)
Q Consensus 432 ~~~~i~~L~~el~~l~~e~~~l~~qi~~~e~ 462 (630)
+...+.+|+.++..|+.++..|+.++..++.
T Consensus 23 kk~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 23 KKQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3345667778888888888888777766653
No 289
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=37.93 E-value=12 Score=35.93 Aligned_cols=16 Identities=25% Similarity=0.517 Sum_probs=14.1
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
.|+..|++|||||.++
T Consensus 3 ~~~i~G~sGsGKttl~ 18 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLL 18 (179)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5678899999999887
No 290
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=37.85 E-value=28 Score=41.24 Aligned_cols=47 Identities=38% Similarity=0.576 Sum_probs=33.4
Q ss_pred hHHHhhHHHHHHhh--cCcceeEEecccCCCCcceeecCCCCCCCchhHHHHHHHHHHh
Q 006826 147 DVFVEVEPILRSAL--DGHNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQAA 203 (630)
Q Consensus 147 eVf~~v~plV~svl--~GyN~~IfaYGqTGSGKTyTM~G~~~~~GIIpRal~~LF~~~~ 203 (630)
.-|.+|...+..++ +|--+|+..-|..|||||.|+. ..+..|-....
T Consensus 403 ~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~----------~Vm~~Lq~~s~ 451 (767)
T KOG1514|consen 403 NEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVL----------EVMKELQTSSA 451 (767)
T ss_pred HHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHH----------HHHHHHHHHHh
Confidence 34555666666666 3677799999999999999984 35666654443
No 291
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=37.83 E-value=11 Score=40.34 Aligned_cols=18 Identities=28% Similarity=0.499 Sum_probs=15.0
Q ss_pred eeEEecccCCCCcceeec
Q 006826 165 VCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM~ 182 (630)
-+|+-.|.||||||.+|.
T Consensus 144 ~siii~G~t~sGKTt~ln 161 (312)
T COG0630 144 KSIIICGGTASGKTTLLN 161 (312)
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 356778999999999984
No 292
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=37.76 E-value=15 Score=35.15 Aligned_cols=15 Identities=47% Similarity=0.510 Sum_probs=13.0
Q ss_pred EEecccCCCCcceee
Q 006826 167 VLAYGQTGTGKTFTM 181 (630)
Q Consensus 167 IfaYGqTGSGKTyTM 181 (630)
++.+|++|+|||...
T Consensus 2 ~li~G~~G~GKT~l~ 16 (187)
T cd01124 2 TLLSGGPGTGKTTFA 16 (187)
T ss_pred EEEEcCCCCCHHHHH
Confidence 678999999999864
No 293
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=37.62 E-value=12 Score=39.45 Aligned_cols=30 Identities=23% Similarity=0.386 Sum_probs=19.7
Q ss_pred CceeeeEEecCCCCCcHHHhHHHHHHHHHhhccccccc
Q 006826 386 GSKVLMLVHASPCEEDVGETICSLSFAKRARGIESNRE 423 (630)
Q Consensus 386 nskT~mI~~VSP~~~~~~ETlsTLrFA~rar~I~~~~~ 423 (630)
-.+|+++|+ .+.+|. +++|.|+--...+..
T Consensus 185 l~kTivfVT-----HDidEA---~kLadri~vm~~G~i 214 (309)
T COG1125 185 LGKTIVFVT-----HDIDEA---LKLADRIAVMDAGEI 214 (309)
T ss_pred hCCEEEEEe-----cCHHHH---HhhhceEEEecCCeE
Confidence 458888887 566665 478888765544433
No 294
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=37.24 E-value=1.1e+02 Score=32.43 Aligned_cols=17 Identities=29% Similarity=0.304 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHhhhHHH
Q 006826 464 LSEKKKLFSAACQSLED 480 (630)
Q Consensus 464 l~e~~~~~~~~~~~l~~ 480 (630)
|.|.++.+.+..+..+.
T Consensus 119 LKEARkEIkQLkQvieT 135 (305)
T PF15290_consen 119 LKEARKEIKQLKQVIET 135 (305)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444333
No 295
>PRK01172 ski2-like helicase; Provisional
Probab=37.22 E-value=21 Score=42.17 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=19.1
Q ss_pred HHHHHHhhcCcceeEEecccCCCCccee
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFT 180 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyT 180 (630)
...+..+.+|.| ++..++||||||..
T Consensus 28 ~~ai~~l~~~~n--vlv~apTGSGKTl~ 53 (674)
T PRK01172 28 RMAIEQLRKGEN--VIVSVPTAAGKTLI 53 (674)
T ss_pred HHHHHHHhcCCc--EEEECCCCchHHHH
Confidence 344455677877 46678999999985
No 296
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=37.19 E-value=31 Score=43.09 Aligned_cols=17 Identities=35% Similarity=0.376 Sum_probs=13.3
Q ss_pred eeEEecccCCCCcceee
Q 006826 165 VCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM 181 (630)
..+.-+|+||||||..+
T Consensus 31 ~l~~I~G~tGaGKStil 47 (1047)
T PRK10246 31 GLFAITGPTGAGKTTLL 47 (1047)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 35567899999999854
No 297
>CHL00181 cbbX CbbX; Provisional
Probab=37.18 E-value=14 Score=39.12 Aligned_cols=15 Identities=40% Similarity=0.461 Sum_probs=13.2
Q ss_pred EEecccCCCCcceee
Q 006826 167 VLAYGQTGTGKTFTM 181 (630)
Q Consensus 167 IfaYGqTGSGKTyTM 181 (630)
|+-||++|+|||+..
T Consensus 62 ill~G~pGtGKT~lA 76 (287)
T CHL00181 62 MSFTGSPGTGKTTVA 76 (287)
T ss_pred EEEECCCCCCHHHHH
Confidence 677999999999875
No 298
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=37.17 E-value=2.8e+02 Score=27.20 Aligned_cols=41 Identities=7% Similarity=0.225 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 006826 439 LEEDMREAEAECQNVRNQIKEVESLLSEKKKLFSAACQSLE 479 (630)
Q Consensus 439 L~~el~~l~~e~~~l~~qi~~~e~~l~e~~~~~~~~~~~l~ 479 (630)
|+.++.+++.+++.|..++..++..+...++.+......++
T Consensus 109 l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~ 149 (161)
T TIGR02894 109 LKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMD 149 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444443333333333334444343333
No 299
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=37.17 E-value=27 Score=35.81 Aligned_cols=30 Identities=30% Similarity=0.293 Sum_probs=22.9
Q ss_pred hHHHHHHhhc--CcceeEEecccCCCCcceee
Q 006826 152 VEPILRSALD--GHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 152 v~plV~svl~--GyN~~IfaYGqTGSGKTyTM 181 (630)
+..+++...+ .-...|.-+|..|.|||...
T Consensus 5 ~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA 36 (287)
T PF00931_consen 5 IEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLA 36 (287)
T ss_dssp HHHHHHHHHTTTTSSEEEEEEESTTSSHHHHH
T ss_pred HHHHHHHhhCCCCCeEEEEEEcCCcCCcceee
Confidence 4556666665 66778899999999999764
No 300
>PRK08233 hypothetical protein; Provisional
Probab=37.16 E-value=14 Score=35.11 Aligned_cols=16 Identities=25% Similarity=0.250 Sum_probs=12.7
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
.|+.-|++|||||+..
T Consensus 5 iI~I~G~~GsGKtTla 20 (182)
T PRK08233 5 IITIAAVSGGGKTTLT 20 (182)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3555799999999865
No 301
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=37.00 E-value=19 Score=39.35 Aligned_cols=53 Identities=30% Similarity=0.473 Sum_probs=35.2
Q ss_pred EEEEeceeeCCCCChhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceeecCCCCCCCchhHHHHHHHHH
Q 006826 131 KEFGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQ 201 (630)
Q Consensus 131 ~~F~FD~VF~~~atQ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM~G~~~~~GIIpRal~~LF~~ 201 (630)
..|.|+.|-++ +++= ..|+..+.+-.-+-|+.+|.+|||||+.+ |++.++...
T Consensus 12 ~~~pf~~ivGq----~~~k---~al~~~~~~p~~~~vli~G~~GtGKs~~a-----------r~~~~~l~~ 64 (350)
T CHL00081 12 PVFPFTAIVGQ----EEMK---LALILNVIDPKIGGVMIMGDRGTGKSTTI-----------RALVDLLPE 64 (350)
T ss_pred CCCCHHHHhCh----HHHH---HHHHHhccCCCCCeEEEEcCCCCCHHHHH-----------HHHHHHHhh
Confidence 46888877653 3322 45555555544456889999999999987 566666543
No 302
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=36.81 E-value=1.6e+02 Score=27.52 Aligned_cols=47 Identities=19% Similarity=0.367 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhh
Q 006826 436 MAELEEDMREAEAECQNVRNQIKEVESLLSEKKKLFSAACQSLEDEE 482 (630)
Q Consensus 436 i~~L~~el~~l~~e~~~l~~qi~~~e~~l~e~~~~~~~~~~~l~~e~ 482 (630)
+..+.+++..++.++..++.........+.+.+..|......++.+.
T Consensus 61 L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~ 107 (132)
T PF07926_consen 61 LQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKEL 107 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33444455555555555555555555555555555555555555544
No 303
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=36.69 E-value=25 Score=35.11 Aligned_cols=28 Identities=32% Similarity=0.488 Sum_probs=21.4
Q ss_pred HHHHHhhcCc---ceeEEecccCCCCcceee
Q 006826 154 PILRSALDGH---NVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 154 plV~svl~Gy---N~~IfaYGqTGSGKTyTM 181 (630)
+-++.++.|- ...+..+|.+|||||...
T Consensus 10 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 40 (225)
T PRK09361 10 KMLDELLGGGFERGTITQIYGPPGSGKTNIC 40 (225)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 4567777542 556789999999999875
No 304
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=36.64 E-value=22 Score=42.70 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=21.5
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
...+..+++|.|+.+.| +||||||...
T Consensus 42 ~~ai~~il~G~nvvv~a--pTGSGKTla~ 68 (742)
T TIGR03817 42 ARAAELAHAGRHVVVAT--GTASGKSLAY 68 (742)
T ss_pred HHHHHHHHCCCCEEEEC--CCCCcHHHHH
Confidence 45667788999976655 8999999874
No 305
>PRK10867 signal recognition particle protein; Provisional
Probab=36.62 E-value=29 Score=39.06 Aligned_cols=18 Identities=33% Similarity=0.506 Sum_probs=15.5
Q ss_pred ceeEEecccCCCCcceee
Q 006826 164 NVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 164 N~~IfaYGqTGSGKTyTM 181 (630)
...|+..|.+|||||.|.
T Consensus 100 p~vI~~vG~~GsGKTTta 117 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTA 117 (433)
T ss_pred CEEEEEECCCCCcHHHHH
Confidence 457788899999999997
No 306
>PRK06217 hypothetical protein; Validated
Probab=36.62 E-value=15 Score=35.77 Aligned_cols=15 Identities=27% Similarity=0.372 Sum_probs=12.9
Q ss_pred EEecccCCCCcceee
Q 006826 167 VLAYGQTGTGKTFTM 181 (630)
Q Consensus 167 IfaYGqTGSGKTyTM 181 (630)
|+-.|.+|||||+.-
T Consensus 4 I~i~G~~GsGKSTla 18 (183)
T PRK06217 4 IHITGASGSGTTTLG 18 (183)
T ss_pred EEEECCCCCCHHHHH
Confidence 788899999999754
No 307
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=36.61 E-value=28 Score=33.84 Aligned_cols=32 Identities=13% Similarity=0.124 Sum_probs=23.5
Q ss_pred CCCCCEEEcCcEEEEcCChHHHHHHHHhhhhc
Q 006826 250 DAKGTVEIEGLTEVQIPDFTKARWWYNKGRRV 281 (630)
Q Consensus 250 d~~g~v~v~glt~v~V~s~~e~~~ll~~g~~~ 281 (630)
...|.+++.++.......-..++++|+.+.-.
T Consensus 92 A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~ 123 (168)
T PF00158_consen 92 ANGGTLFLDEIEDLPPELQAKLLRVLEEGKFT 123 (168)
T ss_dssp TTTSEEEEETGGGS-HHHHHHHHHHHHHSEEE
T ss_pred ccceEEeecchhhhHHHHHHHHHHHHhhchhc
Confidence 45677888888888877778888888876543
No 308
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=36.42 E-value=12 Score=45.75 Aligned_cols=19 Identities=42% Similarity=0.677 Sum_probs=16.7
Q ss_pred cceeEEecccCCCCcceee
Q 006826 163 HNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 163 yN~~IfaYGqTGSGKTyTM 181 (630)
-|.-.+..|+||||||++|
T Consensus 474 ~n~n~~I~G~TGSGKS~l~ 492 (893)
T TIGR03744 474 KNAHLLILGPTGAGKSATL 492 (893)
T ss_pred CcccEEEECCCCCCHHHHH
Confidence 4777788899999999998
No 309
>PRK14531 adenylate kinase; Provisional
Probab=36.39 E-value=15 Score=35.72 Aligned_cols=16 Identities=31% Similarity=0.434 Sum_probs=13.6
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
-|+.+|+.|||||+.-
T Consensus 4 ~i~i~G~pGsGKsT~~ 19 (183)
T PRK14531 4 RLLFLGPPGAGKGTQA 19 (183)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999999863
No 310
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=36.16 E-value=20 Score=39.74 Aligned_cols=27 Identities=41% Similarity=0.528 Sum_probs=21.3
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
+..|-.++.|.++...| |||||||-+.
T Consensus 89 ~~aiP~~L~g~dvIglA--eTGSGKT~af 115 (476)
T KOG0330|consen 89 SEAIPVALGGRDVIGLA--ETGSGKTGAF 115 (476)
T ss_pred hhhcchhhCCCcEEEEe--ccCCCchhhh
Confidence 45566788999986655 9999999876
No 311
>PHA02624 large T antigen; Provisional
Probab=36.11 E-value=25 Score=41.23 Aligned_cols=28 Identities=25% Similarity=0.243 Sum_probs=22.0
Q ss_pred HHHHHhhcCcce--eEEecccCCCCcceee
Q 006826 154 PILRSALDGHNV--CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 154 plV~svl~GyN~--~IfaYGqTGSGKTyTM 181 (630)
.+++.++.|..- ||+-||+.|||||+-.
T Consensus 419 ~~lk~~l~giPKk~~il~~GPpnTGKTtf~ 448 (647)
T PHA02624 419 DILKLIVENVPKRRYWLFKGPVNSGKTTLA 448 (647)
T ss_pred HHHHHHHhcCCCCeEEEEECCCCCCHHHHH
Confidence 346667777655 9999999999999754
No 312
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=36.10 E-value=17 Score=41.78 Aligned_cols=46 Identities=24% Similarity=0.369 Sum_probs=30.4
Q ss_pred EEEEeceeeCCCCChhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 131 KEFGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 131 ~~F~FD~VF~~~atQ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
..+.||.+++.+..=..+...+ .. +...+.-|+-+|.+||||++..
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~----~~-~A~~~~pvlI~GE~GtGK~~lA 244 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQA----RK-LAMLDAPLLITGDTGTGKDLLA 244 (520)
T ss_pred ccccccceeECCHHHHHHHHHH----HH-HhCCCCCEEEECCCCccHHHHH
Confidence 4578998887654333333332 22 2335777999999999999865
No 313
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=36.03 E-value=13 Score=39.11 Aligned_cols=16 Identities=38% Similarity=0.416 Sum_probs=13.7
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
-|+-+|++|+|||+..
T Consensus 60 ~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVA 75 (284)
T ss_pred eEEEEcCCCCCHHHHH
Confidence 3788999999999875
No 314
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=35.96 E-value=25 Score=35.73 Aligned_cols=26 Identities=35% Similarity=0.464 Sum_probs=19.8
Q ss_pred HHHHhhc-C--cceeEEecccCCCCccee
Q 006826 155 ILRSALD-G--HNVCVLAYGQTGTGKTFT 180 (630)
Q Consensus 155 lV~svl~-G--yN~~IfaYGqTGSGKTyT 180 (630)
-++.++. | ...+++.+|++|||||..
T Consensus 9 ~LD~~l~GG~~~gs~~lI~G~pGsGKT~l 37 (237)
T TIGR03877 9 GMDEILHGGIPERNVVLLSGGPGTGKSIF 37 (237)
T ss_pred hHHHHhcCCCcCCeEEEEEcCCCCCHHHH
Confidence 4566665 4 367789999999999963
No 315
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=35.85 E-value=3.8e+02 Score=28.88 Aligned_cols=64 Identities=16% Similarity=0.183 Sum_probs=37.0
Q ss_pred CceeeeEEecCCCCCc-HHHhHHH----HHHHHHhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 386 GSKVLMLVHASPCEED-VGETICS----LSFAKRARGIESNRELSEDLKKRREIRMAELEEDMREAEAE 449 (630)
Q Consensus 386 nskT~mI~~VSP~~~~-~~ETlsT----LrFA~rar~I~~~~~~~~~~~~~~~~~i~~L~~el~~l~~e 449 (630)
..+++.|...=|...+ ++....- +.+++.+.+++..+....-..+.+++.++++.++..+.++|
T Consensus 213 ~~~~l~~~~~lp~~~~~~~~~~~l~~~v~~l~D~~~~~~l~~e~~~K~~k~R~~~~~~~~K~~~~~r~E 281 (321)
T PF07946_consen 213 PKKRLIFSFRLPSSSDDMEALEPLLKLVFYLIDKLARFKLSPEAKKKAKKNREEEEEKILKEAHQERQE 281 (321)
T ss_pred cCcEEEEEEEeCCCcccHHHHHHHHHHHHHHHHHhheeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666655565555 5544443 45677777777766666555566655555555555444444
No 316
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=35.64 E-value=13 Score=36.53 Aligned_cols=15 Identities=33% Similarity=0.441 Sum_probs=12.7
Q ss_pred EEecccCCCCcceee
Q 006826 167 VLAYGQTGTGKTFTM 181 (630)
Q Consensus 167 IfaYGqTGSGKTyTM 181 (630)
|.-.|++|||||++-
T Consensus 2 IgI~G~sgSGKTTla 16 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLA 16 (194)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999999875
No 317
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.59 E-value=24 Score=38.47 Aligned_cols=19 Identities=32% Similarity=0.310 Sum_probs=15.7
Q ss_pred cceeEEecccCCCCcceee
Q 006826 163 HNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 163 yN~~IfaYGqTGSGKTyTM 181 (630)
..-+++-||+.|+|||.+.
T Consensus 37 ~~h~~L~~Gp~G~GKTtla 55 (363)
T PRK14961 37 IHHAWLLSGTRGVGKTTIA 55 (363)
T ss_pred CCeEEEEecCCCCCHHHHH
Confidence 3456788999999999876
No 318
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=35.44 E-value=23 Score=43.44 Aligned_cols=33 Identities=27% Similarity=0.463 Sum_probs=21.1
Q ss_pred eeEEecccCCCCcceee-------cCCCCCCCchhHHHHHHH
Q 006826 165 VCVLAYGQTGTGKTFTM-------DGTSDQPGIVPRALEELF 199 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM-------~G~~~~~GIIpRal~~LF 199 (630)
...+-+|+||||||.-| ||.....| .....++.
T Consensus 26 gi~lI~G~nGsGKSSIldAI~~ALyG~~~~~~--~~~~~~~i 65 (908)
T COG0419 26 GIFLIVGPNGAGKSSILDAITFALYGKTPRLG--AFSLDDLI 65 (908)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHcCCCCCcc--chhhhHHH
Confidence 34466799999998654 77665444 34444444
No 319
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=35.30 E-value=25 Score=41.28 Aligned_cols=39 Identities=26% Similarity=0.351 Sum_probs=24.8
Q ss_pred CCCCChhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 140 NQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 140 ~~~atQ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
.+..-|..+..+| +.+.-.....-++..|+||||||...
T Consensus 235 ~lt~~Q~~ai~~I---~~~~~~~~~~~~Ll~g~TGSGKT~va 273 (630)
T TIGR00643 235 KLTRAQKRVVKEI---LQDLKSDVPMNRLLQGDVGSGKTLVA 273 (630)
T ss_pred CCCHHHHHHHHHH---HHHhccCCCccEEEECCCCCcHHHHH
Confidence 4555676666544 22222334445789999999999865
No 320
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=34.93 E-value=15 Score=30.31 Aligned_cols=15 Identities=33% Similarity=0.552 Sum_probs=12.3
Q ss_pred EEecccCCCCcceee
Q 006826 167 VLAYGQTGTGKTFTM 181 (630)
Q Consensus 167 IfaYGqTGSGKTyTM 181 (630)
++.+|..|+|||.+.
T Consensus 2 ~~~~g~~G~Gktt~~ 16 (99)
T cd01983 2 IVVTGKGGVGKTTLA 16 (99)
T ss_pred EEEECCCCCCHHHHH
Confidence 566788899999986
No 321
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=34.91 E-value=1.4e+02 Score=36.04 Aligned_cols=35 Identities=14% Similarity=0.342 Sum_probs=17.8
Q ss_pred ccCeeEEeCCC--CCEEE---cCcEEEEcCChHHHHHHHH
Q 006826 242 RCNLNIQTDAK--GTVEI---EGLTEVQIPDFTKARWWYN 276 (630)
Q Consensus 242 ~~~L~i~ed~~--g~v~v---~glt~v~V~s~~e~~~ll~ 276 (630)
.+++.+..|+- ..+|+ .|+..|.+.=...+..++.
T Consensus 366 ~cpI~L~~Dp~~~~ryy~~H~~GvH~V~L~wl~~L~~fl~ 405 (717)
T PF10168_consen 366 SCPIRLHRDPLNPDRYYCYHNAGVHSVTLPWLSALQEFLE 405 (717)
T ss_pred CcceEEEecCCCCceEEEEecCccEEEEeccHHHHHHHhc
Confidence 45667766653 22333 4666666654444444433
No 322
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=34.87 E-value=30 Score=34.95 Aligned_cols=20 Identities=25% Similarity=0.262 Sum_probs=16.0
Q ss_pred CcceeEEecccCCCCcceee
Q 006826 162 GHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 162 GyN~~IfaYGqTGSGKTyTM 181 (630)
+....|.-.|++|||||+.+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~ 50 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLA 50 (229)
T ss_pred CCCEEEEEECCCCCCHHHHH
Confidence 55556777799999999876
No 323
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=34.81 E-value=14 Score=40.99 Aligned_cols=18 Identities=44% Similarity=0.499 Sum_probs=15.3
Q ss_pred eeEEecccCCCCcceeec
Q 006826 165 VCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM~ 182 (630)
-.|+-.|++|+|||+|+.
T Consensus 207 ~ii~lvGptGvGKTTt~a 224 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLV 224 (407)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457788999999999984
No 324
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=34.80 E-value=14 Score=36.26 Aligned_cols=15 Identities=33% Similarity=0.452 Sum_probs=12.8
Q ss_pred EEecccCCCCcceee
Q 006826 167 VLAYGQTGTGKTFTM 181 (630)
Q Consensus 167 IfaYGqTGSGKTyTM 181 (630)
|.--|++|||||+++
T Consensus 2 igi~G~~GsGKSTl~ 16 (198)
T cd02023 2 IGIAGGSGSGKTTVA 16 (198)
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999987
No 325
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=34.79 E-value=1e+02 Score=32.08 Aligned_cols=37 Identities=24% Similarity=0.401 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 435 RMAELEEDMREAEAECQNVRNQIKEVESLLSEKKKLF 471 (630)
Q Consensus 435 ~i~~L~~el~~l~~e~~~l~~qi~~~e~~l~e~~~~~ 471 (630)
.+.++.+|.++|++|+..|+.++.++++..+|++++.
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~ 106 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRLQELEQLEAENARLR 106 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777777776666665555544
No 326
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=34.75 E-value=18 Score=31.75 Aligned_cols=15 Identities=33% Similarity=0.696 Sum_probs=13.1
Q ss_pred EEecccCCCCcceee
Q 006826 167 VLAYGQTGTGKTFTM 181 (630)
Q Consensus 167 IfaYGqTGSGKTyTM 181 (630)
|+..|..|+|||..+
T Consensus 2 I~V~G~~g~GKTsLi 16 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLI 16 (119)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECcCCCCHHHHH
Confidence 678899999999865
No 327
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=34.66 E-value=17 Score=34.27 Aligned_cols=16 Identities=31% Similarity=0.459 Sum_probs=13.6
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
.|..+|+.|||||+..
T Consensus 2 iI~i~G~~GSGKstia 17 (171)
T TIGR02173 2 IITISGPPGSGKTTVA 17 (171)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999765
No 328
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=34.65 E-value=2e+02 Score=29.76 Aligned_cols=7 Identities=29% Similarity=0.648 Sum_probs=2.9
Q ss_pred EEcCcEE
Q 006826 256 EIEGLTE 262 (630)
Q Consensus 256 ~v~glt~ 262 (630)
.|.|.+.
T Consensus 12 iVEGAsD 18 (290)
T COG4026 12 IVEGASD 18 (290)
T ss_pred Eeeccch
Confidence 3444443
No 329
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.61 E-value=1.4e+02 Score=31.56 Aligned_cols=38 Identities=21% Similarity=0.514 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 436 MAELEEDMREAEAECQNVRNQIKEVESLLSEKKKLFSA 473 (630)
Q Consensus 436 i~~L~~el~~l~~e~~~l~~qi~~~e~~l~e~~~~~~~ 473 (630)
+.++++++.+.+.++..++.+|..+++.+.+.++.+..
T Consensus 68 ~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~ 105 (265)
T COG3883 68 IDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKK 105 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444433
No 330
>PTZ00014 myosin-A; Provisional
Probab=34.20 E-value=30 Score=42.15 Aligned_cols=35 Identities=23% Similarity=0.351 Sum_probs=26.6
Q ss_pred hHHHhhHHHHHHhh-cCcceeEEecccCCCCcceee
Q 006826 147 DVFVEVEPILRSAL-DGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 147 eVf~~v~plV~svl-~GyN~~IfaYGqTGSGKTyTM 181 (630)
.||.-........+ .|.|-||+.-|.+|||||.+.
T Consensus 165 HifavA~~Ay~~m~~~~~~QsIiiSGESGAGKTe~t 200 (821)
T PTZ00014 165 HVFTTARRALENLHGVKKSQTIIVSGESGAGKTEAT 200 (821)
T ss_pred CHHHHHHHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 47765544444444 689999999999999999764
No 331
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=34.19 E-value=22 Score=40.01 Aligned_cols=18 Identities=39% Similarity=0.541 Sum_probs=15.7
Q ss_pred ceeEEecccCCCCcceee
Q 006826 164 NVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 164 N~~IfaYGqTGSGKTyTM 181 (630)
...|+..|.+|||||.|.
T Consensus 99 p~vi~~vG~~GsGKTTta 116 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTC 116 (428)
T ss_pred CEEEEEECCCCCcHHHHH
Confidence 457888899999999996
No 332
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=33.96 E-value=19 Score=38.59 Aligned_cols=45 Identities=22% Similarity=0.434 Sum_probs=28.3
Q ss_pred eEEecccCCCCcceeecCCCCCCCchhHHHHHHHHHHhcCCCceEEEEEeEEEEecceeeecCCCCC
Q 006826 166 CVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQAALDNSSSVTFSMSMLEVYMGSVRDLLAPKP 232 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM~G~~~~~GIIpRal~~LF~~~~~~~~~~~~v~vS~lEIYnE~I~DLL~~~~ 232 (630)
.|+-.|+||||||-.- ++ | .... .--|++=.++||.+ .|....++
T Consensus 6 ii~I~GpTasGKS~LA-------------l~-L----A~~~--~eIIsaDS~QvYr~--ldIgTaKp 50 (300)
T PRK14729 6 IVFIFGPTAVGKSNIL-------------FH-F----PKGK--AEIINVDSIQVYKE--FDIASCKP 50 (300)
T ss_pred EEEEECCCccCHHHHH-------------HH-H----HHhC--CcEEeccHHHHHCC--CceecCCC
Confidence 6888999999999742 21 1 1111 13577778888875 35555444
No 333
>PRK14532 adenylate kinase; Provisional
Probab=33.94 E-value=18 Score=35.00 Aligned_cols=16 Identities=19% Similarity=0.420 Sum_probs=13.5
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
.|+..|..|||||+.-
T Consensus 2 ~i~~~G~pGsGKsT~a 17 (188)
T PRK14532 2 NLILFGPPAAGKGTQA 17 (188)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999763
No 334
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=33.92 E-value=2.9e+02 Score=23.36 Aligned_cols=19 Identities=16% Similarity=0.279 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 006826 436 MAELEEDMREAEAECQNVR 454 (630)
Q Consensus 436 i~~L~~el~~l~~e~~~l~ 454 (630)
|..|+.++.+++++...+.
T Consensus 20 i~~Lq~e~eeLke~n~~L~ 38 (72)
T PF06005_consen 20 IALLQMENEELKEKNNELK 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHH
Confidence 3334444444444444444
No 335
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=33.90 E-value=18 Score=34.68 Aligned_cols=16 Identities=25% Similarity=0.449 Sum_probs=13.7
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
.|+..|+.|||||+..
T Consensus 5 ii~i~G~~GsGKsTl~ 20 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQC 20 (188)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677999999999875
No 336
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=33.81 E-value=19 Score=37.37 Aligned_cols=40 Identities=23% Similarity=0.235 Sum_probs=24.7
Q ss_pred CCCCChhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 140 NQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 140 ~~~atQ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
.++++|....+....+-+. .-....|+..|.||+|||.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~--~~~~~~IllvG~tGvGKSSli 48 (249)
T cd01853 9 FPDAAQTKALELEAKGKEE--LDFSLTILVLGKTGVGKSSTI 48 (249)
T ss_pred CcHHHHHHHHHHHHHhhhh--ccCCeEEEEECCCCCcHHHHH
Confidence 3455555444333333332 344567888999999999886
No 337
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=33.54 E-value=13 Score=40.94 Aligned_cols=17 Identities=41% Similarity=0.630 Sum_probs=12.7
Q ss_pred eeEEecccCCCCcceee
Q 006826 165 VCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM 181 (630)
--++..|.||||||.+|
T Consensus 16 ~~~li~G~~GsGKT~~i 32 (386)
T PF10412_consen 16 RHILIIGATGSGKTQAI 32 (386)
T ss_dssp G-EEEEE-TTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 34688899999999866
No 338
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=33.53 E-value=2.4e+02 Score=27.54 Aligned_cols=12 Identities=8% Similarity=0.376 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 006826 443 MREAEAECQNVR 454 (630)
Q Consensus 443 l~~l~~e~~~l~ 454 (630)
+.++.+++.+++
T Consensus 90 l~~l~~el~~l~ 101 (191)
T PF04156_consen 90 LQQLQEELDQLQ 101 (191)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 339
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=33.50 E-value=18 Score=38.99 Aligned_cols=73 Identities=25% Similarity=0.374 Sum_probs=43.7
Q ss_pred EeceeeCCCCChhhHHHhh-HHH-HHHhhcCcc---eeEEecccCCCCcceee-----------cCCC------CCCCch
Q 006826 134 GFDKVFNQAASQEDVFVEV-EPI-LRSALDGHN---VCVLAYGQTGTGKTFTM-----------DGTS------DQPGIV 191 (630)
Q Consensus 134 ~FD~VF~~~atQ~eVf~~v-~pl-V~svl~GyN---~~IfaYGqTGSGKTyTM-----------~G~~------~~~GII 191 (630)
.++-|-+-...-+.+-+.| -|+ .-++|.|.. ..|+-||+.|+||+|.- |.-. ..-|=-
T Consensus 131 kWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGES 210 (439)
T KOG0739|consen 131 KWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGES 210 (439)
T ss_pred chhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccH
Confidence 4455554444333333333 332 345566643 67999999999999964 2111 123666
Q ss_pred hHHHHHHHHHHhcCC
Q 006826 192 PRALEELFRQAALDN 206 (630)
Q Consensus 192 pRal~~LF~~~~~~~ 206 (630)
-+.+..||+...+..
T Consensus 211 EkLVknLFemARe~k 225 (439)
T KOG0739|consen 211 EKLVKNLFEMARENK 225 (439)
T ss_pred HHHHHHHHHHHHhcC
Confidence 788999998766554
No 340
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.43 E-value=3e+02 Score=23.46 Aligned_cols=47 Identities=17% Similarity=0.248 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 006826 432 REIRMAELEEDMREAEAECQNVRNQIKEVESLLSEKKKLFSAACQSL 478 (630)
Q Consensus 432 ~~~~i~~L~~el~~l~~e~~~l~~qi~~~e~~l~e~~~~~~~~~~~l 478 (630)
.+.+|.+|+.++.-.++-|..|...+.+.+..++..+..+.....++
T Consensus 6 lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl 52 (72)
T COG2900 6 LEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKL 52 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777677677776666666555555544444444333
No 341
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=33.34 E-value=1.3e+02 Score=31.56 Aligned_cols=42 Identities=10% Similarity=0.128 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 432 REIRMAELEEDMREAEAECQNVRNQIKEVESLLSEKKKLFSA 473 (630)
Q Consensus 432 ~~~~i~~L~~el~~l~~e~~~l~~qi~~~e~~l~e~~~~~~~ 473 (630)
.+.+++.|+.|+.+|+.+++.+..+++++++...+.-..+..
T Consensus 59 l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 59 LQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455777888888888888888887777776655555444444
No 342
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=33.30 E-value=1.1e+02 Score=30.36 Aligned_cols=31 Identities=39% Similarity=0.516 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 440 EEDMREAEAECQNVRNQIKEVESLLSEKKKL 470 (630)
Q Consensus 440 ~~el~~l~~e~~~l~~qi~~~e~~l~e~~~~ 470 (630)
...|..++.++..|+..+..++..+.|+.+.
T Consensus 115 ~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~ 145 (194)
T PF08614_consen 115 ERRLAELEAELAQLEEKIKDLEEELKEKNKA 145 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444443333
No 343
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=33.21 E-value=33 Score=38.66 Aligned_cols=18 Identities=33% Similarity=0.479 Sum_probs=16.1
Q ss_pred ceeEEecccCCCCcceee
Q 006826 164 NVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 164 N~~IfaYGqTGSGKTyTM 181 (630)
...|+..|.+|+|||.|.
T Consensus 100 ~~vi~lvG~~GvGKTTta 117 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTC 117 (429)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 467889999999999997
No 344
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=33.21 E-value=29 Score=34.42 Aligned_cols=28 Identities=36% Similarity=0.436 Sum_probs=20.6
Q ss_pred HHHHHhhc-Cc--ceeEEecccCCCCcceee
Q 006826 154 PILRSALD-GH--NVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 154 plV~svl~-Gy--N~~IfaYGqTGSGKTyTM 181 (630)
+-++.++. |+ ...+..+|.+|||||...
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIA 36 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHH
Confidence 34677775 44 345789999999999875
No 345
>PHA01747 putative ATP-dependent protease
Probab=33.18 E-value=18 Score=40.04 Aligned_cols=30 Identities=30% Similarity=0.521 Sum_probs=25.9
Q ss_pred hHHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 152 VEPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 152 v~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
+-|+|++...+-|.-++=.|+.|+||||+.
T Consensus 178 LiPlVE~~~~~~NyNliELgPRGTGKS~~f 207 (425)
T PHA01747 178 LLPLFTSPVSKRPVHIIELSNRGTGKTTTF 207 (425)
T ss_pred hhhheeccCCCCCeeEEEecCCCCChhhHH
Confidence 357888777888999999999999999986
No 346
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=33.17 E-value=2.1e+02 Score=23.11 Aligned_cols=31 Identities=10% Similarity=0.395 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 436 MAELEEDMREAEAECQNVRNQIKEVESLLSE 466 (630)
Q Consensus 436 i~~L~~el~~l~~e~~~l~~qi~~~e~~l~e 466 (630)
+..+...+..++.|++.+++.++++++-+..
T Consensus 9 ~~~~~~~i~tvk~en~~i~~~ve~i~envk~ 39 (55)
T PF05377_consen 9 LPRIESSINTVKKENEEISESVEKIEENVKD 39 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555544433
No 347
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.92 E-value=24 Score=41.61 Aligned_cols=41 Identities=27% Similarity=0.353 Sum_probs=25.7
Q ss_pred EeceeeCCCCChhhHHHhhHHHHHHhhcCc-ceeEEecccCCCCcceee
Q 006826 134 GFDKVFNQAASQEDVFVEVEPILRSALDGH-NVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 134 ~FD~VF~~~atQ~eVf~~v~plV~svl~Gy-N~~IfaYGqTGSGKTyTM 181 (630)
+||.|.+ |+.+...+..++ -.|. .-.++-||+.|+|||++.
T Consensus 14 ~f~dviG----Qe~vv~~L~~~l---~~~rl~ha~Lf~Gp~GvGKTtlA 55 (618)
T PRK14951 14 SFSEMVG----QEHVVQALTNAL---TQQRLHHAYLFTGTRGVGKTTVS 55 (618)
T ss_pred CHHHhcC----cHHHHHHHHHHH---HcCCCCeEEEEECCCCCCHHHHH
Confidence 5666653 555554333332 2332 346788999999999986
No 348
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=32.86 E-value=21 Score=37.83 Aligned_cols=42 Identities=24% Similarity=0.293 Sum_probs=25.5
Q ss_pred CCCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 35 PPLPLICTDVNVVPEQQKNELEQSIINLEGEIVELRLKKRRL 76 (630)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~ 76 (630)
|..+..--|+.++++-...-....|...+.++.++..++...
T Consensus 23 ~~~~l~e~di~~lk~yg~~pya~~ik~~e~di~~l~~ki~~~ 64 (435)
T KOG0729|consen 23 PINPLDEGDIALLKSYGQGPYAAQIKKVEADIEDLLKKINEL 64 (435)
T ss_pred CCCccchhhHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHh
Confidence 344455567777776655555566666666666666665433
No 349
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=32.72 E-value=32 Score=42.05 Aligned_cols=37 Identities=30% Similarity=0.333 Sum_probs=25.0
Q ss_pred hhhHHHhhHHHHHHhhcCc------ceeEEecccCCCCcceee
Q 006826 145 QEDVFVEVEPILRSALDGH------NVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 145 Q~eVf~~v~plV~svl~Gy------N~~IfaYGqTGSGKTyTM 181 (630)
|...-..|...|..+..|. .+.++-+|++|+|||++.
T Consensus 570 Q~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA 612 (852)
T TIGR03346 570 QDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELA 612 (852)
T ss_pred ChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHH
Confidence 4555555555555555553 356778899999999876
No 350
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=32.70 E-value=16 Score=40.91 Aligned_cols=18 Identities=39% Similarity=0.379 Sum_probs=15.7
Q ss_pred ceeEEecccCCCCcceee
Q 006826 164 NVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 164 N~~IfaYGqTGSGKTyTM 181 (630)
...|...|++|+|||.|+
T Consensus 191 g~vi~lvGpnG~GKTTtl 208 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTT 208 (420)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 356788899999999998
No 351
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=32.57 E-value=32 Score=37.64 Aligned_cols=73 Identities=27% Similarity=0.348 Sum_probs=45.6
Q ss_pred CChhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceeecCC-------CC------CCCchhH---HHHHHHHHHhcCC
Q 006826 143 ASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMDGT-------SD------QPGIVPR---ALEELFRQAALDN 206 (630)
Q Consensus 143 atQ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM~G~-------~~------~~GIIpR---al~~LF~~~~~~~ 206 (630)
..|..++.-++ +.++.|-.-.++-.|+.|||||+-+--- ++ =.|.+.- |+..|-.+++.+.
T Consensus 31 ~~~~~l~~~lk---qt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~ 107 (408)
T KOG2228|consen 31 DEQKHLSELLK---QTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQLALEL 107 (408)
T ss_pred HHHHHHHHHHH---HHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHHHHHHH
Confidence 34455554332 4567888888899999999999987321 11 1366666 7777776655544
Q ss_pred CceEEEEEeEEE
Q 006826 207 SSSVTFSMSMLE 218 (630)
Q Consensus 207 ~~~~~v~vS~lE 218 (630)
.....+..||-|
T Consensus 108 ~~~~k~~gsfte 119 (408)
T KOG2228|consen 108 NRIVKSFGSFTE 119 (408)
T ss_pred hhhheeecccch
Confidence 434445555555
No 352
>CHL00195 ycf46 Ycf46; Provisional
Probab=32.56 E-value=17 Score=41.65 Aligned_cols=17 Identities=41% Similarity=0.558 Sum_probs=15.0
Q ss_pred eeEEecccCCCCcceee
Q 006826 165 VCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM 181 (630)
-.|+-||+.|+|||++.
T Consensus 260 kGILL~GPpGTGKTllA 276 (489)
T CHL00195 260 RGLLLVGIQGTGKSLTA 276 (489)
T ss_pred ceEEEECCCCCcHHHHH
Confidence 45999999999999875
No 353
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=32.53 E-value=24 Score=38.80 Aligned_cols=17 Identities=35% Similarity=0.755 Sum_probs=0.0
Q ss_pred CcceeEEecccCCCCcc
Q 006826 162 GHNVCVLAYGQTGTGKT 178 (630)
Q Consensus 162 GyN~~IfaYGqTGSGKT 178 (630)
|+.-+||+.|+.|+|||
T Consensus 21 Gi~f~im~~G~sG~GKt 37 (373)
T COG5019 21 GIDFTIMVVGESGLGKT 37 (373)
T ss_pred CCceEEEEecCCCCchh
No 354
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=32.50 E-value=16 Score=32.54 Aligned_cols=16 Identities=19% Similarity=0.393 Sum_probs=13.5
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
-|..+|.+|||||..+
T Consensus 3 ki~~~G~~~~GKstl~ 18 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLL 18 (161)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3677899999999876
No 355
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=32.47 E-value=23 Score=41.95 Aligned_cols=44 Identities=23% Similarity=0.383 Sum_probs=26.5
Q ss_pred EEeceeeCCCCChhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 133 FGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 133 F~FD~VF~~~atQ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
+.|+.+++.+.. ...+...+.. +...+..|+-+|.+|||||+.-
T Consensus 373 ~~~~~liG~S~~----~~~~~~~~~~-~a~~~~pVLI~GE~GTGK~~lA 416 (686)
T PRK15429 373 SEFGEIIGRSEA----MYSVLKQVEM-VAQSDSTVLILGETGTGKELIA 416 (686)
T ss_pred ccccceeecCHH----HHHHHHHHHH-HhCCCCCEEEECCCCcCHHHHH
Confidence 455555554333 3333222232 2356778999999999999843
No 356
>PRK06851 hypothetical protein; Provisional
Probab=32.38 E-value=29 Score=38.23 Aligned_cols=28 Identities=36% Similarity=0.534 Sum_probs=23.0
Q ss_pred HHHHHhhcCcceeEEecccCCCCcceee
Q 006826 154 PILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 154 plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
.+.+++++|.+-.++-.|.+|+|||++|
T Consensus 20 s~~~~~~~~~~~~~il~G~pGtGKStl~ 47 (367)
T PRK06851 20 SLYDSIIDGANRIFILKGGPGTGKSTLM 47 (367)
T ss_pred hhhhhhccccceEEEEECCCCCCHHHHH
Confidence 3455566788888999999999999988
No 357
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=32.34 E-value=26 Score=41.36 Aligned_cols=32 Identities=28% Similarity=0.356 Sum_probs=22.0
Q ss_pred hhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 145 QEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 145 Q~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
|.+++..|...+. + +..+++-.+||+|||+..
T Consensus 2 Q~~~~~~i~~al~---~--~~~lliEA~TGtGKTlAY 33 (636)
T TIGR03117 2 QALFYLNCLTSLR---Q--KRIGMLEASTGVGKTLAM 33 (636)
T ss_pred HHHHHHHHHHHHh---c--CCeEEEEcCCCCcHHHHH
Confidence 6777766643332 2 345788889999999664
No 358
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.33 E-value=2.6e+02 Score=29.34 Aligned_cols=61 Identities=10% Similarity=0.161 Sum_probs=33.0
Q ss_pred HhHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 404 ETICSLSFAKRARGIESNRELSEDLKKRREIRMAELEEDMREAEAECQNVRNQIKEVESLLSEKK 468 (630)
Q Consensus 404 ETlsTLrFA~rar~I~~~~~~~~~~~~~~~~~i~~L~~el~~l~~e~~~l~~qi~~~e~~l~e~~ 468 (630)
=+++++-++.....+............ +...|.++++.+++....|..+++.+++.+....
T Consensus 24 ~~~~~~l~~~~~a~~~q~~k~~~~~~~----r~~~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 24 ISLAMLLAGVMLAAVFQTSKGESVRRA----RDLDLVKELRSLQKKVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred HHHHHHHHHHHHHHHHhhccCcchhhh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666555443333222111 1225666666666666666666666666555444
No 359
>PRK04040 adenylate kinase; Provisional
Probab=32.31 E-value=19 Score=35.66 Aligned_cols=16 Identities=38% Similarity=0.586 Sum_probs=14.0
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
.|+.+|..|||||+..
T Consensus 4 ~i~v~G~pG~GKtt~~ 19 (188)
T PRK04040 4 VVVVTGVPGVGKTTVL 19 (188)
T ss_pred EEEEEeCCCCCHHHHH
Confidence 4788999999999865
No 360
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=32.25 E-value=17 Score=32.98 Aligned_cols=16 Identities=44% Similarity=0.503 Sum_probs=13.5
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
.+.-.|++|||||.++
T Consensus 17 ~v~I~GpSGsGKSTLl 32 (107)
T cd00820 17 GVLITGDSGIGKTELA 32 (107)
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4566799999999987
No 361
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=32.14 E-value=30 Score=42.06 Aligned_cols=27 Identities=15% Similarity=0.217 Sum_probs=18.6
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
..+++.+ .. |..++..|+||||||..+
T Consensus 8 ~~i~~~l-~~-~~~vIi~a~TGSGKTT~v 34 (819)
T TIGR01970 8 PALRDAL-AA-HPQVVLEAPPGAGKSTAV 34 (819)
T ss_pred HHHHHHH-Hc-CCcEEEECCCCCCHHHHH
Confidence 4444444 33 446678899999999875
No 362
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=31.89 E-value=34 Score=33.97 Aligned_cols=28 Identities=29% Similarity=0.362 Sum_probs=21.2
Q ss_pred HHHHHhhcC-c--ceeEEecccCCCCcceee
Q 006826 154 PILRSALDG-H--NVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 154 plV~svl~G-y--N~~IfaYGqTGSGKTyTM 181 (630)
+-++.++.| + ...+.-+|++|+|||..+
T Consensus 6 ~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~ 36 (226)
T cd01393 6 KALDELLGGGIPTGRITEIFGEFGSGKTQLC 36 (226)
T ss_pred HHHHHHhCCCCcCCcEEEEeCCCCCChhHHH
Confidence 456777754 3 556788999999999876
No 363
>PRK00300 gmk guanylate kinase; Provisional
Probab=31.77 E-value=17 Score=35.56 Aligned_cols=17 Identities=24% Similarity=0.522 Sum_probs=13.9
Q ss_pred eeEEecccCCCCcceee
Q 006826 165 VCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM 181 (630)
..|.-.|++|||||..+
T Consensus 6 ~~i~i~G~sGsGKstl~ 22 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLV 22 (205)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45778899999999655
No 364
>PRK06762 hypothetical protein; Provisional
Probab=31.63 E-value=21 Score=33.80 Aligned_cols=15 Identities=33% Similarity=0.627 Sum_probs=12.4
Q ss_pred eEEecccCCCCccee
Q 006826 166 CVLAYGQTGTGKTFT 180 (630)
Q Consensus 166 ~IfaYGqTGSGKTyT 180 (630)
+|.-.|..|||||+.
T Consensus 4 li~i~G~~GsGKST~ 18 (166)
T PRK06762 4 LIIIRGNSGSGKTTI 18 (166)
T ss_pred EEEEECCCCCCHHHH
Confidence 566789999999874
No 365
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=31.52 E-value=37 Score=39.32 Aligned_cols=29 Identities=41% Similarity=0.727 Sum_probs=24.3
Q ss_pred hh-HHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 151 EV-EPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 151 ~v-~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
+| +..|-.+|.|..+ +.-.+||||||-.+
T Consensus 94 eiQ~~~Ip~aL~G~Dv--lGAAkTGSGKTLAF 123 (758)
T KOG0343|consen 94 EIQRDTIPMALQGHDV--LGAAKTGSGKTLAF 123 (758)
T ss_pred HHHHhhcchhccCccc--ccccccCCCceeee
Confidence 45 6788889999986 67779999999987
No 366
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=31.48 E-value=20 Score=37.94 Aligned_cols=37 Identities=24% Similarity=0.456 Sum_probs=26.3
Q ss_pred HHHHHHhhcC---cceeEEecccCCCCcceeecCCCCCCCchhHHHHHHHH
Q 006826 153 EPILRSALDG---HNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFR 200 (630)
Q Consensus 153 ~plV~svl~G---yN~~IfaYGqTGSGKTyTM~G~~~~~GIIpRal~~LF~ 200 (630)
..++-.+|.| ...++|.||..|+|||..+ ..+..||-
T Consensus 62 ~~~lg~~L~~~~~~~~~~~l~G~g~nGKStl~-----------~~l~~l~G 101 (304)
T TIGR01613 62 QRVIGYSLTGNYTEQKLFFLYGNGGNGKSTFQ-----------NLLSNLLG 101 (304)
T ss_pred HHHHhHHhcCCCCceEEEEEECCCCCcHHHHH-----------HHHHHHhC
Confidence 4445555555 4667999999999999876 36666663
No 367
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=31.40 E-value=14 Score=37.50 Aligned_cols=13 Identities=31% Similarity=0.391 Sum_probs=11.3
Q ss_pred ecccCCCCcceee
Q 006826 169 AYGQTGTGKTFTM 181 (630)
Q Consensus 169 aYGqTGSGKTyTM 181 (630)
--|++|||||+++
T Consensus 4 I~G~sGSGKTTla 16 (220)
T cd02025 4 IAGSVAVGKSTTA 16 (220)
T ss_pred eeCCCCCCHHHHH
Confidence 3499999999987
No 368
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=31.37 E-value=3.2e+02 Score=26.01 Aligned_cols=37 Identities=27% Similarity=0.426 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 433 EIRMAELEEDMREAEAECQNVRNQIKEVESLLSEKKK 469 (630)
Q Consensus 433 ~~~i~~L~~el~~l~~e~~~l~~qi~~~e~~l~e~~~ 469 (630)
+..|..|...+..++.++..+..++..+...+++..+
T Consensus 34 E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~ 70 (143)
T PF12718_consen 34 EQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEK 70 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3445555555555555555555555555554444433
No 369
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=31.32 E-value=1.8e+02 Score=26.13 Aligned_cols=35 Identities=20% Similarity=0.272 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 437 AELEEDMREAEAECQNVRNQIKEVESLLSEKKKLF 471 (630)
Q Consensus 437 ~~L~~el~~l~~e~~~l~~qi~~~e~~l~e~~~~~ 471 (630)
..++.++..++..+..+..++..++..+.+.+..+
T Consensus 70 ~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l 104 (110)
T TIGR02338 70 QELKEKKETLELRVKTLQRQEERLREQLKELQEKI 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444445444444444444444443
No 370
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=31.10 E-value=29 Score=36.41 Aligned_cols=29 Identities=21% Similarity=0.389 Sum_probs=21.3
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
..+|.+.=..-+.+|.-||+=|||||+.|
T Consensus 9 a~~I~~~~~~~~~~IgL~G~WGsGKSs~l 37 (325)
T PF07693_consen 9 AEIIKNPDSDDPFVIGLYGEWGSGKSSFL 37 (325)
T ss_pred HHHHhccCCCCCeEEEEECCCCCCHHHHH
Confidence 34444332356889999999999999976
No 371
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=31.10 E-value=18 Score=43.35 Aligned_cols=18 Identities=39% Similarity=0.543 Sum_probs=16.0
Q ss_pred ceeEEecccCCCCcceee
Q 006826 164 NVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 164 N~~IfaYGqTGSGKTyTM 181 (630)
|.-++..|+||||||++|
T Consensus 434 ~~n~~I~G~tGsGKS~~~ 451 (785)
T TIGR00929 434 LGHTLIFGPTGSGKTTLL 451 (785)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 666788899999999998
No 372
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=31.08 E-value=34 Score=38.23 Aligned_cols=18 Identities=39% Similarity=0.602 Sum_probs=15.3
Q ss_pred ceeEEecccCCCCcceee
Q 006826 164 NVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 164 N~~IfaYGqTGSGKTyTM 181 (630)
...|+-+|+||+|||+..
T Consensus 108 ~~~iLl~Gp~GtGKT~lA 125 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLA 125 (412)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 356899999999999875
No 373
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=31.07 E-value=36 Score=38.19 Aligned_cols=35 Identities=26% Similarity=0.384 Sum_probs=28.4
Q ss_pred hHHHhhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 147 DVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 147 eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
..-+.+..-++.+-+|....-|..|.-||||||.+
T Consensus 32 ~e~~~l~~~l~~v~~G~s~~kfi~G~YGsGKTf~l 66 (416)
T PF10923_consen 32 REIEALDRDLDRVADGGSSFKFIRGEYGSGKTFFL 66 (416)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEEeCCCCcHHHHH
Confidence 33345544568888999999999999999999986
No 374
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=30.96 E-value=2e+02 Score=34.87 Aligned_cols=56 Identities=20% Similarity=0.161 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHh
Q 006826 426 EDLKKRREIRMAELEEDMREAEAECQNVRNQIKEVESLLSEKKKLFSAACQSLEDE 481 (630)
Q Consensus 426 ~~~~~~~~~~i~~L~~el~~l~~e~~~l~~qi~~~e~~l~e~~~~~~~~~~~l~~e 481 (630)
+|-.+..+.+|..|+....+++-|.+.|++-+.-+|..+.|++-.++.....+..+
T Consensus 98 Eddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~l 153 (1265)
T KOG0976|consen 98 EDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKL 153 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 34444555566666666666666666666666666655555555555444444333
No 375
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.92 E-value=26 Score=40.68 Aligned_cols=16 Identities=38% Similarity=0.366 Sum_probs=13.0
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
.++-||+.|+|||.+.
T Consensus 40 a~Lf~Gp~GvGKTTlA 55 (546)
T PRK14957 40 AYLFTGTRGVGKTTLG 55 (546)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556999999999765
No 376
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.73 E-value=32 Score=37.29 Aligned_cols=27 Identities=30% Similarity=0.453 Sum_probs=19.1
Q ss_pred HHHHhhcCc-ceeEEecccCCCCcceee
Q 006826 155 ILRSALDGH-NVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 155 lV~svl~Gy-N~~IfaYGqTGSGKTyTM 181 (630)
+...+-.|. ...++-||+.|+|||++.
T Consensus 29 l~~~i~~~~~~~~~L~~G~~G~GKt~~a 56 (367)
T PRK14970 29 LLNAIENNHLAQALLFCGPRGVGKTTCA 56 (367)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 333333564 447788999999999876
No 377
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=30.66 E-value=25 Score=43.58 Aligned_cols=28 Identities=29% Similarity=0.489 Sum_probs=22.9
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
...|..++.|.+.+ +..|..|+||||+|
T Consensus 352 r~Av~~il~s~~v~-vv~G~AGTGKTT~l 379 (988)
T PRK13889 352 ADALAHVTDGRDLG-VVVGYAGTGKSAML 379 (988)
T ss_pred HHHHHHHhcCCCeE-EEEeCCCCCHHHHH
Confidence 45678888887765 48899999999987
No 378
>PRK14530 adenylate kinase; Provisional
Probab=30.57 E-value=21 Score=35.63 Aligned_cols=16 Identities=31% Similarity=0.470 Sum_probs=13.3
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
.|+..|++|||||...
T Consensus 5 ~I~i~G~pGsGKsT~~ 20 (215)
T PRK14530 5 RILLLGAPGAGKGTQS 20 (215)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3677999999999764
No 379
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=30.56 E-value=2.5e+02 Score=30.39 Aligned_cols=68 Identities=19% Similarity=0.142 Sum_probs=35.1
Q ss_pred cCCCceeeeEEecCCCCCcHHHhHHHH-----HHHHHhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 383 LGDGSKVLMLVHASPCEEDVGETICSL-----SFAKRARGIESNRELSEDLKKRREIRMAELEEDMREAEAECQNVRN 455 (630)
Q Consensus 383 LgGnskT~mI~~VSP~~~~~~ETlsTL-----rFA~rar~I~~~~~~~~~~~~~~~~~i~~L~~el~~l~~e~~~l~~ 455 (630)
..+.+.++-|---++++.......+++ .|.... ......+.....+.++.+++.++.+.+..+...++
T Consensus 126 ~~~~s~ii~I~~~~~dP~~A~~ian~l~~~~~~~i~~~-----~~~~~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~ 198 (362)
T TIGR01010 126 VDSVSGILTLNVTAFDAEEAQKINQRLLKEGERLINRL-----NERARKDTIAFAENEVKEAEQRLNATKAELLKYQI 198 (362)
T ss_pred ecCCCCeEEEEEEecCHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666666666666665 222221 11112233334455666666666666666655554
No 380
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=30.28 E-value=38 Score=34.79 Aligned_cols=45 Identities=22% Similarity=0.174 Sum_probs=30.8
Q ss_pred eeEEecccCCCCcceee------cCCC-----CCCCchhHHHHHHHHHHhcCCCce
Q 006826 165 VCVLAYGQTGTGKTFTM------DGTS-----DQPGIVPRALEELFRQAALDNSSS 209 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM------~G~~-----~~~GIIpRal~~LF~~~~~~~~~~ 209 (630)
-+-..+|++|+|||.|+ +|-. -.+++=..++..||.-+...+.|-
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G~~~~GaW~ 88 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKGLAQSGAWL 88 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHHHHHHT-EE
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHHHHHHHhhcCchh
Confidence 34456999999999997 4432 356788888999998666555553
No 381
>PRK14527 adenylate kinase; Provisional
Probab=30.22 E-value=23 Score=34.61 Aligned_cols=35 Identities=17% Similarity=0.334 Sum_probs=20.8
Q ss_pred eeEEecccCCCCcceeecCCCCCCCchhHHHHHHH
Q 006826 165 VCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELF 199 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM~G~~~~~GIIpRal~~LF 199 (630)
..|+.+|++|||||....--....|+....+.+++
T Consensus 7 ~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~ 41 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDIL 41 (191)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHH
Confidence 46889999999998765322222344443444444
No 382
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=30.21 E-value=67 Score=40.73 Aligned_cols=32 Identities=22% Similarity=0.212 Sum_probs=23.3
Q ss_pred HHhhHHHHHHhhcCcceeEEecccCCCCccee
Q 006826 149 FVEVEPILRSALDGHNVCVLAYGQTGTGKTFT 180 (630)
Q Consensus 149 f~~v~plV~svl~GyN~~IfaYGqTGSGKTyT 180 (630)
|..++..|..+--+..-.++-+|+||+|||-.
T Consensus 310 LNrIQS~v~daAl~~~EnmLlCAPTGaGKTNV 341 (1674)
T KOG0951|consen 310 LNRIQSKVYDAALRGDENMLLCAPTGAGKTNV 341 (1674)
T ss_pred hhHHHHHHHHHHhcCcCcEEEeccCCCCchHH
Confidence 45565555555556667788899999999964
No 383
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=30.09 E-value=21 Score=35.75 Aligned_cols=16 Identities=38% Similarity=0.544 Sum_probs=13.9
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
.|+..|.||||||.+.
T Consensus 2 ~IlllG~tGsGKSs~~ 17 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLG 17 (212)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5888999999999765
No 384
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=30.09 E-value=44 Score=40.36 Aligned_cols=36 Identities=28% Similarity=0.336 Sum_probs=27.6
Q ss_pred hhHHHh--hHHHHHHhhcCcceeEEecccCCCCcceeec
Q 006826 146 EDVFVE--VEPILRSALDGHNVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 146 ~eVf~~--v~plV~svl~GyN~~IfaYGqTGSGKTyTM~ 182 (630)
..-|+. |..+++.+-+|.+-.+++ =.||+|||||-+
T Consensus 166 ~RyyQ~~AI~rv~Eaf~~g~~raLlv-MATGTGKTrTAi 203 (875)
T COG4096 166 PRYYQIIAIRRVIEAFSKGQNRALLV-MATGTGKTRTAI 203 (875)
T ss_pred chHHHHHHHHHHHHHHhcCCceEEEE-EecCCCcceeHH
Confidence 344543 478899999999995554 479999999975
No 385
>PRK03839 putative kinase; Provisional
Probab=30.07 E-value=22 Score=34.27 Aligned_cols=14 Identities=36% Similarity=0.539 Sum_probs=12.3
Q ss_pred EEecccCCCCccee
Q 006826 167 VLAYGQTGTGKTFT 180 (630)
Q Consensus 167 IfaYGqTGSGKTyT 180 (630)
|+-.|..|||||+.
T Consensus 3 I~l~G~pGsGKsT~ 16 (180)
T PRK03839 3 IAITGTPGVGKTTV 16 (180)
T ss_pred EEEECCCCCCHHHH
Confidence 67789999999975
No 386
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=29.94 E-value=22 Score=35.31 Aligned_cols=35 Identities=20% Similarity=0.384 Sum_probs=21.9
Q ss_pred EEecccCCCCcceeecCCCCCCCchhHHHHHHHHH
Q 006826 167 VLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQ 201 (630)
Q Consensus 167 IfaYGqTGSGKTyTM~G~~~~~GIIpRal~~LF~~ 201 (630)
|+.+|+.|||||..-.--....|+..-.+.+|+..
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~ 36 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRA 36 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHH
Confidence 67899999999875321112345655566666643
No 387
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=29.88 E-value=35 Score=32.82 Aligned_cols=28 Identities=25% Similarity=0.433 Sum_probs=22.3
Q ss_pred HHHHHhhc-CcceeEEecccCCCCcceee
Q 006826 154 PILRSALD-GHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 154 plV~svl~-GyN~~IfaYGqTGSGKTyTM 181 (630)
.++..+.. .....|+..|..|||||..+
T Consensus 3 ~~~~~~~~~~~~~~ililGl~~sGKTtll 31 (175)
T PF00025_consen 3 SVLSKLKSKKKEIKILILGLDGSGKTTLL 31 (175)
T ss_dssp HHHHHCTTTTSEEEEEEEESTTSSHHHHH
T ss_pred HHHHHhcccCcEEEEEEECCCccchHHHH
Confidence 45666664 77889999999999999644
No 388
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=29.88 E-value=34 Score=34.24 Aligned_cols=27 Identities=37% Similarity=0.458 Sum_probs=20.2
Q ss_pred HHHHhhc-Cc--ceeEEecccCCCCcceee
Q 006826 155 ILRSALD-GH--NVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 155 lV~svl~-Gy--N~~IfaYGqTGSGKTyTM 181 (630)
-++.++. |+ ..++..+|++|+|||+..
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~ 37 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFC 37 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHH
Confidence 3566664 43 567888999999999865
No 389
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=29.81 E-value=26 Score=42.02 Aligned_cols=32 Identities=25% Similarity=0.350 Sum_probs=24.0
Q ss_pred hHHHHHHhhcCcceeEEecccCCCCcceeecC
Q 006826 152 VEPILRSALDGHNVCVLAYGQTGTGKTFTMDG 183 (630)
Q Consensus 152 v~plV~svl~GyN~~IfaYGqTGSGKTyTM~G 183 (630)
+..+++-+..+....++-||++|+|||....|
T Consensus 191 i~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~ 222 (731)
T TIGR02639 191 LERTIQVLCRRKKNNPLLVGEPGVGKTAIAEG 222 (731)
T ss_pred HHHHHHHHhcCCCCceEEECCCCCCHHHHHHH
Confidence 34566555556666778999999999999854
No 390
>PRK10884 SH3 domain-containing protein; Provisional
Probab=29.75 E-value=3.1e+02 Score=27.86 Aligned_cols=8 Identities=25% Similarity=0.459 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 006826 447 EAECQNVR 454 (630)
Q Consensus 447 ~~e~~~l~ 454 (630)
+++++.|+
T Consensus 138 ~~~n~~L~ 145 (206)
T PRK10884 138 KEENQKLK 145 (206)
T ss_pred HHHHHHHH
Confidence 33333333
No 391
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=29.70 E-value=4.9e+02 Score=32.24 Aligned_cols=50 Identities=26% Similarity=0.454 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhccCCchhhHHHh
Q 006826 446 AEAECQNVRNQIKEVESLLSEKKKLFSAACQSLEDEEKSFVSPKENLKEA 495 (630)
Q Consensus 446 l~~e~~~l~~qi~~~e~~l~e~~~~~~~~~~~l~~e~~~~~~~~~~l~~~ 495 (630)
....+..+.+.+++++..+.-+++.++.....|.++-....+.+.+|++-
T Consensus 999 ~~h~v~~~~ek~ee~~a~lr~Ke~efeetmdaLq~di~~lEsek~elKqr 1048 (1243)
T KOG0971|consen 999 ADHRVEKVQEKLEETQALLRKKEKEFEETMDALQADIDQLESEKAELKQR 1048 (1243)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 33445667777888888888888888888888888888888888888864
No 392
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=29.58 E-value=33 Score=35.33 Aligned_cols=25 Identities=44% Similarity=0.603 Sum_probs=18.6
Q ss_pred HHHhhcC---cceeEEecccCCCCccee
Q 006826 156 LRSALDG---HNVCVLAYGQTGTGKTFT 180 (630)
Q Consensus 156 V~svl~G---yN~~IfaYGqTGSGKTyT 180 (630)
++.++.| ....++.||.+|||||.-
T Consensus 12 lD~~l~GG~p~g~~~lI~G~pGsGKT~f 39 (260)
T COG0467 12 LDEILGGGLPRGSVVLITGPPGTGKTIF 39 (260)
T ss_pred hHHHhcCCCcCCcEEEEEcCCCCcHHHH
Confidence 4555554 366789999999999854
No 393
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=29.56 E-value=2.1e+02 Score=27.31 Aligned_cols=43 Identities=16% Similarity=0.316 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006826 435 RMAELEEDMREAEAECQNVRNQIKEVESLLSEKKKLFSAACQS 477 (630)
Q Consensus 435 ~i~~L~~el~~l~~e~~~l~~qi~~~e~~l~e~~~~~~~~~~~ 477 (630)
++..++.+....+.+|..|...+..++..++.....+......
T Consensus 22 ~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~ 64 (143)
T PF12718_consen 22 KVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEK 64 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444445444444444444444444444333333
No 394
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=29.47 E-value=2.8e+02 Score=28.67 Aligned_cols=27 Identities=15% Similarity=0.316 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 439 LEEDMREAEAECQNVRNQIKEVESLLS 465 (630)
Q Consensus 439 L~~el~~l~~e~~~l~~qi~~~e~~l~ 465 (630)
|..|-....++|+.+...|..+|..+.
T Consensus 44 L~~Er~~h~eeLrqI~~DIn~lE~iIk 70 (230)
T PF10146_consen 44 LLQERMAHVEELRQINQDINTLENIIK 70 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444445555555555443
No 395
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=29.46 E-value=3.1e+02 Score=26.93 Aligned_cols=32 Identities=19% Similarity=0.304 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 435 RMAELEEDMREAEAECQNVRNQIKEVESLLSE 466 (630)
Q Consensus 435 ~i~~L~~el~~l~~e~~~l~~qi~~~e~~l~e 466 (630)
.+.+|++++..|+.++..|..++..+++..+.
T Consensus 112 e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~ 143 (161)
T TIGR02894 112 QNESLQKRNEELEKELEKLRQRLSTIEEDYQT 143 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555444444443333
No 396
>PRK09039 hypothetical protein; Validated
Probab=29.41 E-value=2.5e+02 Score=30.65 Aligned_cols=35 Identities=14% Similarity=0.235 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 436 MAELEEDMREAEAECQNVRNQIKEVESLLSEKKKL 470 (630)
Q Consensus 436 i~~L~~el~~l~~e~~~l~~qi~~~e~~l~e~~~~ 470 (630)
|..|+.++..++.++...+.+.++.+..+++....
T Consensus 146 I~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~ 180 (343)
T PRK09039 146 IAALRRQLAALEAALDASEKRDRESQAKIADLGRR 180 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444443333333333333333333
No 397
>PRK10865 protein disaggregation chaperone; Provisional
Probab=29.39 E-value=20 Score=43.83 Aligned_cols=43 Identities=21% Similarity=0.356 Sum_probs=29.4
Q ss_pred EeceeeCCCCChhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceeecC
Q 006826 134 GFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMDG 183 (630)
Q Consensus 134 ~FD~VF~~~atQ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM~G 183 (630)
.+|-|++.+. ++..+|+-........++-||++|+|||+...|
T Consensus 176 ~l~~vigr~~-------ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~ 218 (857)
T PRK10865 176 KLDPVIGRDE-------EIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEG 218 (857)
T ss_pred CCCcCCCCHH-------HHHHHHHHHhcCCcCceEEECCCCCCHHHHHHH
Confidence 4555555432 356666655555555677889999999999864
No 398
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=29.38 E-value=24 Score=37.28 Aligned_cols=15 Identities=60% Similarity=0.928 Sum_probs=12.9
Q ss_pred eEEecccCCCCccee
Q 006826 166 CVLAYGQTGTGKTFT 180 (630)
Q Consensus 166 ~IfaYGqTGSGKTyT 180 (630)
-++.||+.|+|||..
T Consensus 207 GvLmYGPPGTGKTlm 221 (424)
T KOG0652|consen 207 GVLMYGPPGTGKTLM 221 (424)
T ss_pred ceEeeCCCCCcHHHH
Confidence 489999999999854
No 399
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=29.34 E-value=50 Score=34.64 Aligned_cols=28 Identities=25% Similarity=0.545 Sum_probs=21.6
Q ss_pred HHHHHHhh-cCcceeEEecccCCCCccee
Q 006826 153 EPILRSAL-DGHNVCVLAYGQTGTGKTFT 180 (630)
Q Consensus 153 ~plV~svl-~GyN~~IfaYGqTGSGKTyT 180 (630)
.++=..++ .||.--||..||+|.|||..
T Consensus 34 ~Qm~~k~mk~GF~FNIMVVgqSglgkstl 62 (336)
T KOG1547|consen 34 EQMRKKTMKTGFDFNIMVVGQSGLGKSTL 62 (336)
T ss_pred HHHHHHHHhccCceEEEEEecCCCCchhh
Confidence 34433333 79999999999999999864
No 400
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=29.31 E-value=34 Score=38.99 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=16.7
Q ss_pred hcCc-ceeEEecccCCCCcceee
Q 006826 160 LDGH-NVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 160 l~Gy-N~~IfaYGqTGSGKTyTM 181 (630)
-.|. ...++-||+.|+|||.+.
T Consensus 31 ~~~~l~~~~Lf~GPpGtGKTTlA 53 (472)
T PRK14962 31 KKNSISHAYIFAGPRGTGKTTVA 53 (472)
T ss_pred HcCCCCeEEEEECCCCCCHHHHH
Confidence 3443 345788999999999886
No 401
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=29.20 E-value=2e+02 Score=23.57 Aligned_cols=26 Identities=23% Similarity=0.558 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 435 RMAELEEDMREAEAECQNVRNQIKEV 460 (630)
Q Consensus 435 ~i~~L~~el~~l~~e~~~l~~qi~~~ 460 (630)
++.+++.++.++++++..|+.+++.+
T Consensus 25 ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 25 EIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555555555555555444
No 402
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=29.15 E-value=20 Score=34.89 Aligned_cols=16 Identities=25% Similarity=0.501 Sum_probs=13.4
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
.|+-.|++|||||..+
T Consensus 4 ~i~l~G~sGsGKsTl~ 19 (186)
T PRK10078 4 LIWLMGPSGSGKDSLL 19 (186)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4666899999999875
No 403
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=28.91 E-value=27 Score=33.36 Aligned_cols=16 Identities=25% Similarity=0.513 Sum_probs=13.6
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
.|...|++|||||..+
T Consensus 3 ii~l~G~~GsGKsTl~ 18 (180)
T TIGR03263 3 LIVISGPSGVGKSTLV 18 (180)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778899999999854
No 404
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=28.90 E-value=24 Score=32.56 Aligned_cols=20 Identities=35% Similarity=0.484 Sum_probs=16.1
Q ss_pred CcceeEEecccCCCCcceee
Q 006826 162 GHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 162 GyN~~IfaYGqTGSGKTyTM 181 (630)
..+.-|+-+|..||||++..
T Consensus 19 ~~~~pvli~GE~GtGK~~~A 38 (138)
T PF14532_consen 19 KSSSPVLITGEPGTGKSLLA 38 (138)
T ss_dssp CSSS-EEEECCTTSSHHHHH
T ss_pred CCCCcEEEEcCCCCCHHHHH
Confidence 56677888999999999864
No 405
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=28.88 E-value=37 Score=39.82 Aligned_cols=44 Identities=23% Similarity=0.517 Sum_probs=26.1
Q ss_pred EEEE-eceeeCCCCChhhHHHhhHHHHHHh---hcCcceeEEecccCCCCcc
Q 006826 131 KEFG-FDKVFNQAASQEDVFVEVEPILRSA---LDGHNVCVLAYGQTGTGKT 178 (630)
Q Consensus 131 ~~F~-FD~VF~~~atQ~eVf~~v~plV~sv---l~GyN~~IfaYGqTGSGKT 178 (630)
+.|. |+.+|+ ++++-+.+-..+.++ +..-...++-.|++|+|||
T Consensus 70 ~ry~fF~d~yG----lee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKS 117 (644)
T PRK15455 70 KRYPAFEEFYG----MEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKS 117 (644)
T ss_pred ccccchhcccC----cHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCch
Confidence 3443 555664 455554442222222 2445667888999999999
No 406
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=28.85 E-value=21 Score=36.80 Aligned_cols=14 Identities=29% Similarity=0.641 Sum_probs=11.5
Q ss_pred EecccCCCCcceee
Q 006826 168 LAYGQTGTGKTFTM 181 (630)
Q Consensus 168 faYGqTGSGKTyTM 181 (630)
.-.|++|||||..+
T Consensus 32 ~iiGpSGSGKSTlL 45 (240)
T COG1126 32 VIIGPSGSGKSTLL 45 (240)
T ss_pred EEECCCCCCHHHHH
Confidence 34699999999876
No 407
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=28.77 E-value=20 Score=36.90 Aligned_cols=15 Identities=33% Similarity=0.598 Sum_probs=12.7
Q ss_pred EEecccCCCCcceee
Q 006826 167 VLAYGQTGTGKTFTM 181 (630)
Q Consensus 167 IfaYGqTGSGKTyTM 181 (630)
+.-.|++|||||.-|
T Consensus 34 vaI~GpSGSGKSTLL 48 (226)
T COG1136 34 VAIVGPSGSGKSTLL 48 (226)
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999876
No 408
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=28.76 E-value=33 Score=36.90 Aligned_cols=42 Identities=29% Similarity=0.368 Sum_probs=25.6
Q ss_pred eceeeCCCCChhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 135 FDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 135 FD~VF~~~atQ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
||.+++.+. .+..+...+..+. ..+.-|+-+|.+||||++.-
T Consensus 5 ~~~liG~S~----~~~~~~~~i~~~a-~~~~pVlI~GE~GtGK~~lA 46 (326)
T PRK11608 5 KDNLLGEAN----SFLEVLEQVSRLA-PLDKPVLIIGERGTGKELIA 46 (326)
T ss_pred cCccEECCH----HHHHHHHHHHHHh-CCCCCEEEECCCCCcHHHHH
Confidence 444554433 3334433334433 45777889999999999754
No 409
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=28.70 E-value=24 Score=33.32 Aligned_cols=15 Identities=27% Similarity=0.483 Sum_probs=12.4
Q ss_pred EEecccCCCCcceee
Q 006826 167 VLAYGQTGTGKTFTM 181 (630)
Q Consensus 167 IfaYGqTGSGKTyTM 181 (630)
|+..|.+|||||+..
T Consensus 2 i~i~G~~GsGKSTla 16 (149)
T cd02027 2 IWLTGLSGSGKSTIA 16 (149)
T ss_pred EEEEcCCCCCHHHHH
Confidence 667799999998754
No 410
>PRK04406 hypothetical protein; Provisional
Probab=28.66 E-value=3.7e+02 Score=22.89 Aligned_cols=43 Identities=21% Similarity=0.362 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 006826 436 MAELEEDMREAEAECQNVRNQIKEVESLLSEKKKLFSAACQSL 478 (630)
Q Consensus 436 i~~L~~el~~l~~e~~~l~~qi~~~e~~l~e~~~~~~~~~~~l 478 (630)
+..++.++.+|+..+.....-|+++...+-+-++.+......+
T Consensus 6 ~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql 48 (75)
T PRK04406 6 IEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQM 48 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666655555555555555544444333333
No 411
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=28.47 E-value=27 Score=41.18 Aligned_cols=17 Identities=18% Similarity=0.272 Sum_probs=14.9
Q ss_pred eeEEecccCCCCcceee
Q 006826 165 VCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM 181 (630)
.-++++|+||||||.++
T Consensus 212 ~H~lv~ApTgsGKgvg~ 228 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSV 228 (623)
T ss_pred ceEEEEeCCCCCcccee
Confidence 45789999999999986
No 412
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=28.46 E-value=35 Score=40.89 Aligned_cols=17 Identities=53% Similarity=0.749 Sum_probs=14.8
Q ss_pred eeEEecccCCCCcceee
Q 006826 165 VCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM 181 (630)
-.|+-||++|+|||+.+
T Consensus 213 ~giLL~GppGtGKT~la 229 (733)
T TIGR01243 213 KGVLLYGPPGTGKTLLA 229 (733)
T ss_pred ceEEEECCCCCChHHHH
Confidence 45889999999999875
No 413
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=28.45 E-value=42 Score=42.78 Aligned_cols=33 Identities=33% Similarity=0.542 Sum_probs=20.5
Q ss_pred hHHHhhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 147 DVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 147 eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
-||..-..++.. +.+.. .++..|+||||||.-+
T Consensus 74 Pi~~~r~~Il~a-i~~~~-VviI~GeTGSGKTTql 106 (1294)
T PRK11131 74 PVSQKKQDILEA-IRDHQ-VVIVAGETGSGKTTQL 106 (1294)
T ss_pred CHHHHHHHHHHH-HHhCC-eEEEECCCCCCHHHHH
Confidence 355443344443 44444 4667799999999865
No 414
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=28.07 E-value=1.2e+02 Score=38.07 Aligned_cols=120 Identities=18% Similarity=0.221 Sum_probs=66.3
Q ss_pred hhhhhhHhHHHHHHHHHHHHhCCCCccCCCCchhhhhhcccCCCceeeeEEecCCCCCcHHHhHHHHHHHHHhhcccccc
Q 006826 343 EGRAINLSLSALADVIAALRRKRGHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVGETICSLSFAKRARGIESNR 422 (630)
Q Consensus 343 E~~~INkSLsaLg~VI~aL~~~~~hiPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~ETlsTLrFA~rar~I~~~~ 422 (630)
=+..|+.++..|.+|=.-|..-...| +.--+|+.+.-..+++.-.+ ....++-...|+-|.+|..+-..+
T Consensus 1516 L~~~I~e~v~sL~nVd~IL~~T~~di----~ra~~L~s~A~~a~~~A~~v------~~~ae~V~eaL~~Ad~Aq~~a~~a 1585 (1758)
T KOG0994|consen 1516 LTGEIQERVASLPNVDAILSRTKGDI----ARAENLQSEAERARSRAEDV------KGQAEDVVEALEEADVAQGEAQDA 1585 (1758)
T ss_pred HHHHHHHHHHhcccHHHHHHhhhhhH----HHHHHHHHHHHHHHhHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777766665433332 12334444433322221110 123455666777888777654333
Q ss_pred cccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 423 ELSED-LKKRREIRMAELEEDMREAEAECQNVRNQIKEVESLLSEKKKLFS 472 (630)
Q Consensus 423 ~~~~~-~~~~~~~~i~~L~~el~~l~~e~~~l~~qi~~~e~~l~e~~~~~~ 472 (630)
..-.+ .....+..+.+.++++.-.+.-+....+++.+++..+++.+....
T Consensus 1586 i~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~ 1636 (1758)
T KOG0994|consen 1586 IQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAA 1636 (1758)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22111 122234456667777777777777778888888887777665543
No 415
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=28.05 E-value=22 Score=35.72 Aligned_cols=16 Identities=25% Similarity=0.434 Sum_probs=13.5
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
.+.-.|+.|||||.+|
T Consensus 27 i~~ivGpNGaGKSTll 42 (212)
T cd03274 27 FSAIVGPNGSGKSNVI 42 (212)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4456799999999998
No 416
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=28.03 E-value=2.4e+02 Score=24.91 Aligned_cols=29 Identities=17% Similarity=0.357 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 432 REIRMAELEEDMREAEAECQNVRNQIKEV 460 (630)
Q Consensus 432 ~~~~i~~L~~el~~l~~e~~~l~~qi~~~ 460 (630)
-+.++.+|+.++..+..|+..|+.++...
T Consensus 47 wek~v~~L~~e~~~l~~E~e~L~~~l~~e 75 (87)
T PF12709_consen 47 WEKKVDELENENKALKRENEQLKKKLDTE 75 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666555433
No 417
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=27.79 E-value=27 Score=39.45 Aligned_cols=16 Identities=50% Similarity=0.702 Sum_probs=12.9
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
-|+..|+||||||+.-
T Consensus 228 NvLllGPtGsGKTlla 243 (564)
T KOG0745|consen 228 NVLLLGPTGSGKTLLA 243 (564)
T ss_pred cEEEECCCCCchhHHH
Confidence 4577899999999753
No 418
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=27.76 E-value=25 Score=39.99 Aligned_cols=41 Identities=37% Similarity=0.629 Sum_probs=26.7
Q ss_pred HHHHHhhcCcceeEEecccCCCCcceeecCCCCCCCchhHH-HHHHH
Q 006826 154 PILRSALDGHNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRA-LEELF 199 (630)
Q Consensus 154 plV~svl~GyN~~IfaYGqTGSGKTyTM~G~~~~~GIIpRa-l~~LF 199 (630)
-+.-.+..|.| +|.||+.|||||.... .-+||+|-. ..++.
T Consensus 190 AleiAAAGgHn--Ll~~GpPGtGKTmla~---Rl~~lLPpls~~E~l 231 (490)
T COG0606 190 ALEIAAAGGHN--LLLVGPPGTGKTMLAS---RLPGLLPPLSIPEAL 231 (490)
T ss_pred HHHHHHhcCCc--EEEecCCCCchHHhhh---hhcccCCCCChHHHH
Confidence 34444556666 4889999999998863 346777643 33444
No 419
>PRK00279 adk adenylate kinase; Reviewed
Probab=27.73 E-value=26 Score=34.99 Aligned_cols=15 Identities=27% Similarity=0.476 Sum_probs=13.0
Q ss_pred eEEecccCCCCccee
Q 006826 166 CVLAYGQTGTGKTFT 180 (630)
Q Consensus 166 ~IfaYGqTGSGKTyT 180 (630)
.|+.+|+.|||||..
T Consensus 2 ~I~v~G~pGsGKsT~ 16 (215)
T PRK00279 2 RLILLGPPGAGKGTQ 16 (215)
T ss_pred EEEEECCCCCCHHHH
Confidence 378899999999965
No 420
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=27.70 E-value=34 Score=39.44 Aligned_cols=26 Identities=35% Similarity=0.571 Sum_probs=20.0
Q ss_pred HHHHHHhhcCcceeEEecccCCCCccee
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFT 180 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyT 180 (630)
+..|-.+++|.++.|- .|||||||-.
T Consensus 165 kq~IP~lL~grD~lV~--aQTGSGKTLA 190 (708)
T KOG0348|consen 165 KQAIPVLLEGRDALVR--AQTGSGKTLA 190 (708)
T ss_pred hcchhhhhcCcceEEE--cCCCCcccHH
Confidence 4566677889998555 5999999964
No 421
>PHA02774 E1; Provisional
Probab=27.58 E-value=42 Score=39.30 Aligned_cols=27 Identities=33% Similarity=0.650 Sum_probs=20.3
Q ss_pred HHHHhhcCc--ceeEEecccCCCCcceee
Q 006826 155 ILRSALDGH--NVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 155 lV~svl~Gy--N~~IfaYGqTGSGKTyTM 181 (630)
.+..++.|. .-||+-||+.|+||||--
T Consensus 423 ~lk~~l~~~PKknciv~~GPP~TGKS~fa 451 (613)
T PHA02774 423 ALKDFLKGIPKKNCLVIYGPPDTGKSMFC 451 (613)
T ss_pred HHHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 345555553 359999999999999864
No 422
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=27.55 E-value=41 Score=38.99 Aligned_cols=44 Identities=23% Similarity=0.384 Sum_probs=28.1
Q ss_pred EEeceeeCCCCChhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 133 FGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 133 F~FD~VF~~~atQ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
|.||.+++.+. ....+...+.. +...+..|+-+|.+||||++.-
T Consensus 216 ~~f~~iiG~S~----~m~~~~~~i~~-~A~s~~pVLI~GE~GTGKe~~A 259 (538)
T PRK15424 216 YVLGDLLGQSP----QMEQVRQTILL-YARSSAAVLIQGETGTGKELAA 259 (538)
T ss_pred cchhheeeCCH----HHHHHHHHHHH-HhCCCCcEEEECCCCCCHHHHH
Confidence 56666665433 33333333333 3456789999999999998754
No 423
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=27.49 E-value=3.4e+02 Score=28.33 Aligned_cols=28 Identities=25% Similarity=0.484 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 430 KRREIRMAELEEDMREAEAECQNVRNQI 457 (630)
Q Consensus 430 ~~~~~~i~~L~~el~~l~~e~~~l~~qi 457 (630)
.++..++.+++.+|++|.+|.+.|+.+.
T Consensus 86 DrKKaRm~eme~~i~dL~een~~L~~en 113 (292)
T KOG4005|consen 86 DRKKARMEEMEYEIKDLTEENEILQNEN 113 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666666666665555443
No 424
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=27.44 E-value=27 Score=37.39 Aligned_cols=15 Identities=33% Similarity=0.355 Sum_probs=12.6
Q ss_pred EEecccCCCCcceee
Q 006826 167 VLAYGQTGTGKTFTM 181 (630)
Q Consensus 167 IfaYGqTGSGKTyTM 181 (630)
++..++||||||.+.
T Consensus 2 vvi~apTGsGKT~~~ 16 (358)
T TIGR01587 2 LVIEAPTGYGKTEAA 16 (358)
T ss_pred EEEEeCCCCCHHHHH
Confidence 567899999999874
No 425
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=27.41 E-value=43 Score=35.44 Aligned_cols=27 Identities=30% Similarity=0.418 Sum_probs=19.4
Q ss_pred HHHHhhcCc---ceeEEecccCCCCcceee
Q 006826 155 ILRSALDGH---NVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 155 lV~svl~Gy---N~~IfaYGqTGSGKTyTM 181 (630)
-++.++.|- ...+..||.+|||||..+
T Consensus 83 ~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~ 112 (310)
T TIGR02236 83 ELDELLGGGIETQAITEVFGEFGSGKTQIC 112 (310)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 345566542 456788999999999764
No 426
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=27.41 E-value=24 Score=43.13 Aligned_cols=32 Identities=19% Similarity=0.320 Sum_probs=23.8
Q ss_pred hHHHHHHhhcCcceeEEecccCCCCcceeecC
Q 006826 152 VEPILRSALDGHNVCVLAYGQTGTGKTFTMDG 183 (630)
Q Consensus 152 v~plV~svl~GyN~~IfaYGqTGSGKTyTM~G 183 (630)
+..+++-...+....++-+|++|+|||+...|
T Consensus 182 i~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~ 213 (852)
T TIGR03346 182 IRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEG 213 (852)
T ss_pred HHHHHHHHhcCCCCceEEEcCCCCCHHHHHHH
Confidence 56666666566555566789999999998864
No 427
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=27.41 E-value=25 Score=41.32 Aligned_cols=20 Identities=25% Similarity=0.308 Sum_probs=16.1
Q ss_pred ceeEEecccCCCCcceeecC
Q 006826 164 NVCVLAYGQTGTGKTFTMDG 183 (630)
Q Consensus 164 N~~IfaYGqTGSGKTyTM~G 183 (630)
..-++..|..|||||.||..
T Consensus 14 ~~~~~V~Ag~GSGKT~~L~~ 33 (664)
T TIGR01074 14 TGPCLVLAGAGSGKTRVITN 33 (664)
T ss_pred CCCEEEEecCCCCHHHHHHH
Confidence 34578888999999999843
No 428
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=27.39 E-value=1.5e+02 Score=31.86 Aligned_cols=18 Identities=17% Similarity=0.397 Sum_probs=11.1
Q ss_pred CCCCCchhHHHHHHHHHH
Q 006826 185 SDQPGIVPRALEELFRQA 202 (630)
Q Consensus 185 ~~~~GIIpRal~~LF~~~ 202 (630)
.+++..-|-.+++.|+.+
T Consensus 6 ~~~~~~~~isL~~FL~~~ 23 (325)
T PF08317_consen 6 EDDEDYEPISLQDFLNMT 23 (325)
T ss_pred cccCCCCCcCHHHHHHHh
Confidence 345566666777777654
No 429
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=27.38 E-value=29 Score=32.38 Aligned_cols=15 Identities=27% Similarity=0.598 Sum_probs=11.7
Q ss_pred EEecccCCCCcceee
Q 006826 167 VLAYGQTGTGKTFTM 181 (630)
Q Consensus 167 IfaYGqTGSGKTyTM 181 (630)
|.-.|++|||||..+
T Consensus 2 i~i~GpsGsGKstl~ 16 (137)
T cd00071 2 IVLSGPSGVGKSTLL 16 (137)
T ss_pred EEEECCCCCCHHHHH
Confidence 455799999999644
No 430
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=27.35 E-value=1.8e+02 Score=28.50 Aligned_cols=36 Identities=25% Similarity=0.327 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 435 RMAELEEDMREAEAECQNVRNQIKEVESLLSEKKKL 470 (630)
Q Consensus 435 ~i~~L~~el~~l~~e~~~l~~qi~~~e~~l~e~~~~ 470 (630)
..++|+.||.+.++||..|++-+...+....|.++.
T Consensus 30 E~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrk 65 (162)
T PF04201_consen 30 EREELRSELAKVEEEIQTLRQVLAAKERHCAELKRK 65 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 345678888888888888887777666666665554
No 431
>PRK13721 conjugal transfer ATP-binding protein TraC; Provisional
Probab=27.33 E-value=22 Score=43.30 Aligned_cols=18 Identities=33% Similarity=0.455 Sum_probs=15.2
Q ss_pred ceeEEecccCCCCcceee
Q 006826 164 NVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 164 N~~IfaYGqTGSGKTyTM 181 (630)
|.-++..|.||||||++|
T Consensus 449 N~N~~I~G~sGsGKS~l~ 466 (844)
T PRK13721 449 NYNMAVCGTSGAGKTGLI 466 (844)
T ss_pred cccEEEEcCCCCCHHHHH
Confidence 445778899999999998
No 432
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=27.32 E-value=20 Score=31.68 Aligned_cols=15 Identities=27% Similarity=0.437 Sum_probs=12.4
Q ss_pred EEecccCCCCcceee
Q 006826 167 VLAYGQTGTGKTFTM 181 (630)
Q Consensus 167 IfaYGqTGSGKTyTM 181 (630)
|.-.|.+|+|||..+
T Consensus 2 V~iiG~~~~GKSTli 16 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLI 16 (116)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 566899999999865
No 433
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=27.18 E-value=23 Score=35.30 Aligned_cols=16 Identities=44% Similarity=0.617 Sum_probs=14.6
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
+++-+|++|||||..+
T Consensus 24 ~~~i~G~NGsGKTTLl 39 (204)
T cd03240 24 LTLIVGQNGAGKTTII 39 (204)
T ss_pred eEEEECCCCCCHHHHH
Confidence 7888999999999887
No 434
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=27.15 E-value=23 Score=41.01 Aligned_cols=18 Identities=39% Similarity=0.505 Sum_probs=14.1
Q ss_pred eeEEecccCCCCcceeec
Q 006826 165 VCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM~ 182 (630)
.+|.-.|++|+|||+|+.
T Consensus 351 ~vIaLVGPtGvGKTTtaa 368 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIA 368 (559)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 345555999999999983
No 435
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=27.05 E-value=20 Score=43.51 Aligned_cols=16 Identities=38% Similarity=0.640 Sum_probs=13.8
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
-.+..|+||||||++|
T Consensus 443 n~~I~G~tGsGKS~l~ 458 (811)
T PRK13873 443 HTLVVGPTGAGKSVLL 458 (811)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4567899999999998
No 436
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=27.02 E-value=4.3e+02 Score=24.05 Aligned_cols=26 Identities=23% Similarity=0.526 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 435 RMAELEEDMREAEAECQNVRNQIKEV 460 (630)
Q Consensus 435 ~i~~L~~el~~l~~e~~~l~~qi~~~ 460 (630)
++..+++++..+-+++..|+.++.++
T Consensus 9 ~l~~le~~l~~l~~~~~~LK~~~~~l 34 (107)
T PF06156_consen 9 RLDQLEQQLGQLLEELEELKKQLQEL 34 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666555444
No 437
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=26.96 E-value=48 Score=42.29 Aligned_cols=33 Identities=33% Similarity=0.460 Sum_probs=20.8
Q ss_pred hHHHhhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 147 DVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 147 eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
-||.....+++. +++ |..++..|.||||||.-+
T Consensus 67 Pi~~~~~~Il~~-l~~-~~vvii~g~TGSGKTTql 99 (1283)
T TIGR01967 67 PVSAKREDIAEA-IAE-NQVVIIAGETGSGKTTQL 99 (1283)
T ss_pred CHHHHHHHHHHH-HHh-CceEEEeCCCCCCcHHHH
Confidence 344443444444 344 446677799999999865
No 438
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=26.93 E-value=1.7e+02 Score=27.32 Aligned_cols=40 Identities=20% Similarity=0.305 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 006826 51 QKNELEQSIINLEGEIVELRLKKRRLDEKRREALNKILDI 90 (630)
Q Consensus 51 ~~~~l~~~~~~l~~~~~~l~~~~~~~~~~Rr~l~n~~~el 90 (630)
....|+.+-..++.++.++..++..+...-+-||++|..+
T Consensus 92 ~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 92 SEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455777777778888888888888888899999998754
No 439
>PRK10689 transcription-repair coupling factor; Provisional
Probab=26.91 E-value=43 Score=42.31 Aligned_cols=18 Identities=33% Similarity=0.359 Sum_probs=14.4
Q ss_pred ceeEEecccCCCCcceee
Q 006826 164 NVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 164 N~~IfaYGqTGSGKTyTM 181 (630)
..-++++|+||||||-+.
T Consensus 621 ~~d~Ll~a~TGsGKT~va 638 (1147)
T PRK10689 621 AMDRLVCGDVGFGKTEVA 638 (1147)
T ss_pred CCCEEEEcCCCcCHHHHH
Confidence 345799999999999643
No 440
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=26.88 E-value=88 Score=35.84 Aligned_cols=23 Identities=13% Similarity=0.479 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 006826 435 RMAELEEDMREAEAECQNVRNQI 457 (630)
Q Consensus 435 ~i~~L~~el~~l~~e~~~l~~qi 457 (630)
+|++|++|+.+|++++..+.+++
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v 54 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRV 54 (489)
T ss_pred HHHHHHHHHHHHHHhhccccccc
Confidence 44444444444444444433333
No 441
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=26.86 E-value=2.6e+02 Score=28.84 Aligned_cols=13 Identities=23% Similarity=0.263 Sum_probs=4.9
Q ss_pred hhHhHHHHHHHHH
Q 006826 347 INLSLSALADVIA 359 (630)
Q Consensus 347 INkSLsaLg~VI~ 359 (630)
+|.+|..+...|.
T Consensus 18 ~~~~L~~~~~~l~ 30 (302)
T PF10186_consen 18 VNNRLLELRSELQ 30 (302)
T ss_pred HHHHHHHHHHHHH
Confidence 3333433333333
No 442
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=26.83 E-value=33 Score=41.32 Aligned_cols=29 Identities=21% Similarity=0.329 Sum_probs=21.5
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceeec
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM~ 182 (630)
...|..++.+ +..++..|..|+||||+|-
T Consensus 358 ~~Av~~i~~s-~~~~il~G~aGTGKTtll~ 386 (744)
T TIGR02768 358 YEAVRHVTGS-GDIAVVVGRAGTGKSTMLK 386 (744)
T ss_pred HHHHHHHhcC-CCEEEEEecCCCCHHHHHH
Confidence 3456667765 3356788999999999984
No 443
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=26.80 E-value=50 Score=37.29 Aligned_cols=44 Identities=23% Similarity=0.361 Sum_probs=26.0
Q ss_pred HHhhcCcceeEEecccCCCCcceeecCCCC----CCCchhHHHHHHHHHHh
Q 006826 157 RSALDGHNVCVLAYGQTGTGKTFTMDGTSD----QPGIVPRALEELFRQAA 203 (630)
Q Consensus 157 ~svl~GyN~~IfaYGqTGSGKTyTM~G~~~----~~GIIpRal~~LF~~~~ 203 (630)
.-+=.++|. +-.|++|+||||.-.+-.. ..| -+-.+..||..+.
T Consensus 204 ~fve~~~Nl--i~lGp~GTGKThla~~l~~~~a~~sG-~f~T~a~Lf~~L~ 251 (449)
T TIGR02688 204 PLVEPNYNL--IELGPKGTGKSYIYNNLSPYVILISG-GTITVAKLFYNIS 251 (449)
T ss_pred HHHhcCCcE--EEECCCCCCHHHHHHHHhHHHHHHcC-CcCcHHHHHHHHH
Confidence 333356666 4569999999988754211 134 2334556666544
No 444
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=26.76 E-value=30 Score=37.24 Aligned_cols=47 Identities=32% Similarity=0.388 Sum_probs=29.2
Q ss_pred eEEecccCCCCcceeecCCCCCCCchhHHHHHHHHHHhcCCCceEEEEEeEEEEecceeeecCCCCCc
Q 006826 166 CVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQAALDNSSSVTFSMSMLEVYMGSVRDLLAPKPV 233 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM~G~~~~~GIIpRal~~LF~~~~~~~~~~~~v~vS~lEIYnE~I~DLL~~~~~ 233 (630)
.|+-+|+|+||||.... .+ ...-+. --|++--++||.+ .|....++.
T Consensus 5 ~i~I~GPTAsGKT~lai-----------~L-------Ak~~~~-eIIs~DSmQvYr~--mdIGTAKps 51 (308)
T COG0324 5 LIVIAGPTASGKTALAI-----------AL-------AKRLGG-EIISLDSMQVYRG--LDIGTAKPS 51 (308)
T ss_pred EEEEECCCCcCHHHHHH-----------HH-------HHHcCC-cEEecchhhhcCC--CcccCCCCC
Confidence 57889999999998752 11 111122 2467777888876 455555443
No 445
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=26.71 E-value=3.3e+02 Score=24.54 Aligned_cols=43 Identities=14% Similarity=0.296 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006826 433 EIRMAELEEDMREA--EAECQNVRNQIKEVESLLSEKKKLFSAAC 475 (630)
Q Consensus 433 ~~~i~~L~~el~~l--~~e~~~l~~qi~~~e~~l~e~~~~~~~~~ 475 (630)
+.++..++.+++.+ .+++..|+-.+.+++..+.+....+....
T Consensus 48 ~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~ 92 (106)
T PF10805_consen 48 DRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVS 92 (106)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34555556555555 55555666556555555555555544433
No 446
>CHL00095 clpC Clp protease ATP binding subunit
Probab=26.69 E-value=46 Score=40.48 Aligned_cols=38 Identities=34% Similarity=0.378 Sum_probs=24.0
Q ss_pred ChhhHHHhhHHHHHHhhcCc------ceeEEecccCCCCcceee
Q 006826 144 SQEDVFVEVEPILRSALDGH------NVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 144 tQ~eVf~~v~plV~svl~Gy------N~~IfaYGqTGSGKTyTM 181 (630)
.|+++-..|...|....-|. .+.++-+|+||+|||++.
T Consensus 513 GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA 556 (821)
T CHL00095 513 GQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELT 556 (821)
T ss_pred ChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHH
Confidence 35555555555454444443 245566999999999875
No 447
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=26.63 E-value=4.2e+02 Score=25.81 Aligned_cols=28 Identities=11% Similarity=0.461 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 435 RMAELEEDMREAEAECQNVRNQIKEVES 462 (630)
Q Consensus 435 ~i~~L~~el~~l~~e~~~l~~qi~~~e~ 462 (630)
++.++.+++.+++..+..+..++...+.
T Consensus 89 ~l~~l~~el~~l~~~~~~~~~~l~~~~~ 116 (191)
T PF04156_consen 89 QLQQLQEELDQLQERIQELESELEKLKE 116 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555554444444444333
No 448
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=26.61 E-value=26 Score=36.04 Aligned_cols=15 Identities=53% Similarity=0.600 Sum_probs=11.6
Q ss_pred EEecccCCCCcceee
Q 006826 167 VLAYGQTGTGKTFTM 181 (630)
Q Consensus 167 IfaYGqTGSGKTyTM 181 (630)
+.-+|+||+|||..-
T Consensus 4 ~~i~GpT~tGKt~~a 18 (233)
T PF01745_consen 4 YLIVGPTGTGKTALA 18 (233)
T ss_dssp EEEE-STTSSHHHHH
T ss_pred EEEECCCCCChhHHH
Confidence 567899999999864
No 449
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=26.60 E-value=30 Score=38.81 Aligned_cols=14 Identities=57% Similarity=0.959 Sum_probs=12.3
Q ss_pred eEEecccCCCCcce
Q 006826 166 CVLAYGQTGTGKTF 179 (630)
Q Consensus 166 ~IfaYGqTGSGKTy 179 (630)
-|+-||+.|+|||-
T Consensus 386 NilfyGPPGTGKTm 399 (630)
T KOG0742|consen 386 NILFYGPPGTGKTM 399 (630)
T ss_pred heeeeCCCCCCchH
Confidence 48899999999983
No 450
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=26.56 E-value=41 Score=38.83 Aligned_cols=45 Identities=24% Similarity=0.496 Sum_probs=30.3
Q ss_pred EEEeceeeCCCCChhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 132 EFGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 132 ~F~FD~VF~~~atQ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
.|.||.+++.+. ....+...+.. +...+..|+-+|.+||||++.-
T Consensus 208 ~~~f~~iiG~S~----~m~~~~~~i~~-~A~~~~pVLI~GE~GTGKe~lA 252 (526)
T TIGR02329 208 RYRLDDLLGASA----PMEQVRALVRL-YARSDATVLILGESGTGKELVA 252 (526)
T ss_pred ccchhheeeCCH----HHHHHHHHHHH-HhCCCCcEEEECCCCcCHHHHH
Confidence 478888776543 33334333333 3456789999999999998754
No 451
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.51 E-value=38 Score=38.67 Aligned_cols=17 Identities=35% Similarity=0.389 Sum_probs=13.2
Q ss_pred eeEEecccCCCCcceee
Q 006826 165 VCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM 181 (630)
-.++-||+.|+|||++.
T Consensus 39 hayLf~Gp~G~GKTtlA 55 (486)
T PRK14953 39 HAYIFAGPRGTGKTTIA 55 (486)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34556999999998764
No 452
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=26.46 E-value=32 Score=40.21 Aligned_cols=27 Identities=37% Similarity=0.369 Sum_probs=18.8
Q ss_pred HHHHHhhcCcceeEEecccCCCCcceeec
Q 006826 154 PILRSALDGHNVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 154 plV~svl~GyN~~IfaYGqTGSGKTyTM~ 182 (630)
..|..++.. ...+..|..|||||||+.
T Consensus 152 ~A~~~al~~--~~~vitGgpGTGKTt~v~ 178 (586)
T TIGR01447 152 VAVALALKS--NFSLITGGPGTGKTTTVA 178 (586)
T ss_pred HHHHHHhhC--CeEEEEcCCCCCHHHHHH
Confidence 355566663 344557999999999973
No 453
>PRK09401 reverse gyrase; Reviewed
Probab=26.43 E-value=43 Score=42.48 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=19.4
Q ss_pred HHHHHhhcCcceeEEecccCCCCccee
Q 006826 154 PILRSALDGHNVCVLAYGQTGTGKTFT 180 (630)
Q Consensus 154 plV~svl~GyN~~IfaYGqTGSGKTyT 180 (630)
..+..++.|.|+.+.| +||||||..
T Consensus 87 ~~i~~il~g~dv~i~A--pTGsGKT~f 111 (1176)
T PRK09401 87 TWAKRLLLGESFAIIA--PTGVGKTTF 111 (1176)
T ss_pred HHHHHHHCCCcEEEEc--CCCCCHHHH
Confidence 4566788998876654 999999953
No 454
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=26.43 E-value=43 Score=37.54 Aligned_cols=17 Identities=41% Similarity=0.622 Sum_probs=15.2
Q ss_pred eeEEecccCCCCcceee
Q 006826 165 VCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM 181 (630)
..|+-+|+||+|||+..
T Consensus 117 ~~iLL~GP~GsGKT~lA 133 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLA 133 (413)
T ss_pred ceEEEECCCCcCHHHHH
Confidence 57899999999999876
No 455
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=26.41 E-value=33 Score=39.21 Aligned_cols=31 Identities=23% Similarity=0.345 Sum_probs=22.3
Q ss_pred hHHHHHHhhcCcc------eeEEecccCCCCcceeec
Q 006826 152 VEPILRSALDGHN------VCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 152 v~plV~svl~GyN------~~IfaYGqTGSGKTyTM~ 182 (630)
|+.=+..+++|.+ -.|+-.|++|||||+.|-
T Consensus 14 Ie~~l~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 14 IQTDLERILVKFNKELPSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred HHHHHHHHHhCCceeecCCCEEEEECCCCCCHHHHHh
Confidence 4444556666643 447789999999999885
No 456
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=26.34 E-value=42 Score=34.79 Aligned_cols=17 Identities=24% Similarity=0.333 Sum_probs=14.6
Q ss_pred ceeEEecccCCCCccee
Q 006826 164 NVCVLAYGQTGTGKTFT 180 (630)
Q Consensus 164 N~~IfaYGqTGSGKTyT 180 (630)
..+++.+|++|+|||.-
T Consensus 36 gs~~lI~G~pGtGKT~l 52 (259)
T TIGR03878 36 YSVINITGVSDTGKSLM 52 (259)
T ss_pred CcEEEEEcCCCCCHHHH
Confidence 66788999999999963
No 457
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=26.31 E-value=3.1e+02 Score=25.57 Aligned_cols=40 Identities=23% Similarity=0.253 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 433 EIRMAELEEDMREAEAECQNVRNQIKEVESLLSEKKKLFS 472 (630)
Q Consensus 433 ~~~i~~L~~el~~l~~e~~~l~~qi~~~e~~l~e~~~~~~ 472 (630)
...+.+|++++..++-++..|+.|.+.+++.+++.+..+.
T Consensus 69 ~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~ 108 (119)
T COG1382 69 EEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQ 108 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777777777777777777777776666655543
No 458
>PRK13853 type IV secretion system protein VirB4; Provisional
Probab=26.30 E-value=22 Score=42.98 Aligned_cols=17 Identities=35% Similarity=0.475 Sum_probs=14.6
Q ss_pred eeEEecccCCCCcceee
Q 006826 165 VCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM 181 (630)
+-.+.+|+||||||.+|
T Consensus 427 g~~~I~G~tGsGKS~l~ 443 (789)
T PRK13853 427 GMTAIFGPIGRGKTTLM 443 (789)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 34778999999999987
No 459
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=26.20 E-value=5.5e+02 Score=29.03 Aligned_cols=47 Identities=23% Similarity=0.383 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhHHHhh
Q 006826 436 MAELEEDMREAEAECQ----NVRNQIKEVESLLSEKKKLFSAACQSLEDEE 482 (630)
Q Consensus 436 i~~L~~el~~l~~e~~----~l~~qi~~~e~~l~e~~~~~~~~~~~l~~e~ 482 (630)
+..++..|..-++++. ....+...+...++|.++........+..+.
T Consensus 173 l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q 223 (420)
T COG4942 173 LAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQ 223 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444443 3444555566666676666666655555554
No 460
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.20 E-value=36 Score=38.95 Aligned_cols=17 Identities=29% Similarity=0.483 Sum_probs=14.8
Q ss_pred eeEEecccCCCCcceee
Q 006826 165 VCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM 181 (630)
.+++-||+.|+|||.+.
T Consensus 41 ha~Lf~GP~GtGKTTlA 57 (484)
T PRK14956 41 HAYIFFGPRGVGKTTIA 57 (484)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45889999999999876
No 461
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=26.19 E-value=30 Score=37.17 Aligned_cols=15 Identities=33% Similarity=0.503 Sum_probs=13.0
Q ss_pred eEEecccCCCCccee
Q 006826 166 CVLAYGQTGTGKTFT 180 (630)
Q Consensus 166 ~IfaYGqTGSGKTyT 180 (630)
.|+..|+||||||..
T Consensus 6 ~i~i~GptgsGKt~l 20 (307)
T PRK00091 6 VIVIVGPTASGKTAL 20 (307)
T ss_pred EEEEECCCCcCHHHH
Confidence 578899999999964
No 462
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=26.18 E-value=2.4e+02 Score=25.45 Aligned_cols=37 Identities=22% Similarity=0.393 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 430 KRREIRMAELEEDMREAEAECQNVRNQIKEVESLLSE 466 (630)
Q Consensus 430 ~~~~~~i~~L~~el~~l~~e~~~l~~qi~~~e~~l~e 466 (630)
+..+.++..++.++..+++++..++.++..++..+++
T Consensus 90 ~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~ 126 (129)
T cd00890 90 EFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQ 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666777777777777777666666665543
No 463
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=26.11 E-value=2.4e+02 Score=28.14 Aligned_cols=31 Identities=29% Similarity=0.485 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 438 ELEEDMREAEAECQNVRNQIKEVESLLSEKK 468 (630)
Q Consensus 438 ~L~~el~~l~~e~~~l~~qi~~~e~~l~e~~ 468 (630)
+++.++..++.++..|..++.+++...+..+
T Consensus 124 ~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~e 154 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELEKQVQELKNKCEQLE 154 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455555555444444444443333
No 464
>PLN02200 adenylate kinase family protein
Probab=26.11 E-value=30 Score=35.50 Aligned_cols=36 Identities=19% Similarity=0.321 Sum_probs=22.7
Q ss_pred eeEEecccCCCCcceeecCCCCCCCchhHHHHHHHH
Q 006826 165 VCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFR 200 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM~G~~~~~GIIpRal~~LF~ 200 (630)
..|+..|.+|||||.--..-....|+....+.+|+.
T Consensus 44 ~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR 79 (234)
T PLN02200 44 FITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLR 79 (234)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHH
Confidence 468999999999997632212233555555555554
No 465
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=26.08 E-value=2.8e+02 Score=24.94 Aligned_cols=39 Identities=18% Similarity=0.293 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 429 KKRREIRMAELEEDMREAEAECQNVRNQIKEVESLLSEK 467 (630)
Q Consensus 429 ~~~~~~~i~~L~~el~~l~~e~~~l~~qi~~~e~~l~e~ 467 (630)
......++..++..+..+++....++.++.+++..+.+.
T Consensus 69 ~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 69 IQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445667777788888888888888887777766653
No 466
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=26.04 E-value=28 Score=34.49 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=13.4
Q ss_pred eeEEecccCCCCcceee
Q 006826 165 VCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM 181 (630)
..|.-.|++|||||+.+
T Consensus 7 ~vi~I~G~sGsGKSTl~ 23 (207)
T TIGR00235 7 IIIGIGGGSGSGKTTVA 23 (207)
T ss_pred EEEEEECCCCCCHHHHH
Confidence 35667899999999754
No 467
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=25.98 E-value=2.4e+02 Score=25.23 Aligned_cols=41 Identities=27% Similarity=0.381 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 427 DLKKRREIRMAELEEDMREAEAECQNVRNQIKEVESLLSEK 467 (630)
Q Consensus 427 ~~~~~~~~~i~~L~~el~~l~~e~~~l~~qi~~~e~~l~e~ 467 (630)
+.......++..+++.+..++.++..++.++..++..+++.
T Consensus 77 eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 117 (120)
T PF02996_consen 77 EAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQL 117 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556677777778888888888877777776666543
No 468
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=25.93 E-value=26 Score=34.98 Aligned_cols=17 Identities=35% Similarity=0.499 Sum_probs=14.1
Q ss_pred eeEEecccCCCCcceee
Q 006826 165 VCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM 181 (630)
..+.-.|++|||||..|
T Consensus 29 ~~~~i~G~NGsGKSTll 45 (213)
T cd03279 29 GLFLICGPTGAGKSTIL 45 (213)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 35667899999999887
No 469
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=25.92 E-value=25 Score=33.51 Aligned_cols=15 Identities=47% Similarity=0.629 Sum_probs=12.6
Q ss_pred EEecccCCCCcceee
Q 006826 167 VLAYGQTGTGKTFTM 181 (630)
Q Consensus 167 IfaYGqTGSGKTyTM 181 (630)
+...|.+|+|||.+.
T Consensus 3 ~~~~G~~G~GKTt~~ 17 (173)
T cd03115 3 ILLVGLQGVGKTTTA 17 (173)
T ss_pred EEEECCCCCCHHHHH
Confidence 455699999999886
No 470
>PRK14701 reverse gyrase; Provisional
Probab=25.84 E-value=56 Score=42.87 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=20.6
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcce
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTF 179 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTy 179 (630)
+..+..++.|.++. +.++||||||.
T Consensus 85 ~~~i~~il~G~d~l--i~APTGsGKTl 109 (1638)
T PRK14701 85 KTWAKRILRGKSFS--IVAPTGMGKST 109 (1638)
T ss_pred HHHHHHHHcCCCEE--EEEcCCCCHHH
Confidence 56778889999864 56799999998
No 471
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=25.82 E-value=30 Score=35.71 Aligned_cols=17 Identities=35% Similarity=0.530 Sum_probs=14.4
Q ss_pred eeEEecccCCCCcceee
Q 006826 165 VCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM 181 (630)
-++..+|++|||||..+
T Consensus 31 e~~~i~G~nGsGKSTL~ 47 (235)
T COG1122 31 ERVLLIGPNGSGKSTLL 47 (235)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 36788999999999876
No 472
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=25.76 E-value=34 Score=40.12 Aligned_cols=45 Identities=22% Similarity=0.275 Sum_probs=28.2
Q ss_pred EEEeceeeCCCCChhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 132 EFGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 132 ~F~FD~VF~~~atQ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
.|.||.+.+. ...+..+...+..+. ..+..|+-+|.+|+||++.-
T Consensus 321 ~~~~~~l~g~----s~~~~~~~~~~~~~a-~~~~pvli~Ge~GtGK~~~A 365 (638)
T PRK11388 321 SHTFDHMPQD----SPQMRRLIHFGRQAA-KSSFPVLLCGEEGVGKALLA 365 (638)
T ss_pred cccccceEEC----CHHHHHHHHHHHHHh-CcCCCEEEECCCCcCHHHHH
Confidence 4566666543 334444433344433 45777999999999999753
No 473
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=25.75 E-value=30 Score=36.16 Aligned_cols=17 Identities=29% Similarity=0.433 Sum_probs=13.9
Q ss_pred eeEEecccCCCCcceee
Q 006826 165 VCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM 181 (630)
.+|+..|..|||||+.-
T Consensus 3 ~liil~G~pGSGKSTla 19 (300)
T PHA02530 3 KIILTVGVPGSGKSTWA 19 (300)
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 36788999999998753
No 474
>PRK05480 uridine/cytidine kinase; Provisional
Probab=25.66 E-value=25 Score=34.82 Aligned_cols=18 Identities=28% Similarity=0.397 Sum_probs=14.4
Q ss_pred ceeEEecccCCCCcceee
Q 006826 164 NVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 164 N~~IfaYGqTGSGKTyTM 181 (630)
...|.--|.+|||||+..
T Consensus 6 ~~iI~I~G~sGsGKTTl~ 23 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVA 23 (209)
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 345777899999999765
No 475
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=25.66 E-value=2.2e+02 Score=29.71 Aligned_cols=29 Identities=28% Similarity=0.538 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 434 IRMAELEEDMREAEAECQNVRNQIKEVES 462 (630)
Q Consensus 434 ~~i~~L~~el~~l~~e~~~l~~qi~~~e~ 462 (630)
.+..+||+|++.+.+++..|+.+++.++.
T Consensus 93 ~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~ 121 (248)
T PF08172_consen 93 QRNAELEEELRKQQQTISSLRREVESLRA 121 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777766655544
No 476
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=25.57 E-value=4.5e+02 Score=22.84 Aligned_cols=69 Identities=7% Similarity=0.204 Sum_probs=0.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhHHHhhhccCCchhhH
Q 006826 424 LSEDLKKRREIRMAELEEDMREAEAECQNVRNQIKEVESLLSEKKKL---FSAACQSLEDEEKSFVSPKENL 492 (630)
Q Consensus 424 ~~~~~~~~~~~~i~~L~~el~~l~~e~~~l~~qi~~~e~~l~e~~~~---~~~~~~~l~~e~~~~~~~~~~l 492 (630)
++-++-...+.+|+..-..|.-|+-|+..|+++...+....++.... +....+.+..+...|......|
T Consensus 1 MS~EvleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~L 72 (79)
T PRK15422 1 MSLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 72 (79)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
No 477
>PRK02496 adk adenylate kinase; Provisional
Probab=25.55 E-value=30 Score=33.42 Aligned_cols=15 Identities=27% Similarity=0.485 Sum_probs=12.7
Q ss_pred EEecccCCCCcceee
Q 006826 167 VLAYGQTGTGKTFTM 181 (630)
Q Consensus 167 IfaYGqTGSGKTyTM 181 (630)
|+..|+.|||||...
T Consensus 4 i~i~G~pGsGKst~a 18 (184)
T PRK02496 4 LIFLGPPGAGKGTQA 18 (184)
T ss_pred EEEECCCCCCHHHHH
Confidence 667899999998764
No 478
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=25.51 E-value=35 Score=41.21 Aligned_cols=31 Identities=26% Similarity=0.355 Sum_probs=19.6
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceeecC
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTMDG 183 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM~G 183 (630)
..+++-+.......++-||++|+|||+...|
T Consensus 196 ~~~i~iL~r~~~~n~LLvGppGvGKT~lae~ 226 (758)
T PRK11034 196 ERAIQVLCRRRKNNPLLVGESGVGKTAIAEG 226 (758)
T ss_pred HHHHHHHhccCCCCeEEECCCCCCHHHHHHH
Confidence 4444433333333445599999999999754
No 479
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=25.47 E-value=34 Score=38.63 Aligned_cols=41 Identities=24% Similarity=0.276 Sum_probs=24.6
Q ss_pred EeceeeCCCCChhhHHHhhHHHHHHhhcCc-ceeEEecccCCCCcceee
Q 006826 134 GFDKVFNQAASQEDVFVEVEPILRSALDGH-NVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 134 ~FD~VF~~~atQ~eVf~~v~plV~svl~Gy-N~~IfaYGqTGSGKTyTM 181 (630)
+||.|++ |+.+- ..+...+-.|. .-+++-||+.|+|||.+.
T Consensus 15 ~~~diiG----q~~~v---~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A 56 (451)
T PRK06305 15 TFSEILG----QDAVV---AVLKNALRFNRAAHAYLFSGIRGTGKTTLA 56 (451)
T ss_pred CHHHhcC----cHHHH---HHHHHHHHcCCCceEEEEEcCCCCCHHHHH
Confidence 5666654 33332 33333333454 345666999999999876
No 480
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=25.33 E-value=4.3e+02 Score=24.96 Aligned_cols=48 Identities=15% Similarity=0.250 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 006826 432 REIRMAELEEDMREAEAECQNVRNQIKEVESLLSEKKKLFSAACQSLE 479 (630)
Q Consensus 432 ~~~~i~~L~~el~~l~~e~~~l~~qi~~~e~~l~e~~~~~~~~~~~l~ 479 (630)
.++-+...++-|+-++.|++.|++-+-.+++..+|-++.+....+.+.
T Consensus 76 heKvl~aKdETI~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~~qL~ 123 (126)
T PF13118_consen 76 HEKVLDAKDETIEALKNENRFLKEALYSMQELYEEDRKTIELLREQLK 123 (126)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344566677888899999999999999999999888888776665554
No 481
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD. The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM).
Probab=25.31 E-value=25 Score=40.97 Aligned_cols=15 Identities=40% Similarity=0.711 Sum_probs=12.7
Q ss_pred eEEecccCCCCccee
Q 006826 166 CVLAYGQTGTGKTFT 180 (630)
Q Consensus 166 ~IfaYGqTGSGKTyT 180 (630)
-++.+|.||||||..
T Consensus 178 h~li~G~tGsGKs~~ 192 (566)
T TIGR02759 178 HILIHGTTGSGKSVA 192 (566)
T ss_pred ceEEEcCCCCCHHHH
Confidence 468899999999954
No 482
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=25.27 E-value=42 Score=38.16 Aligned_cols=26 Identities=31% Similarity=0.381 Sum_probs=20.8
Q ss_pred HHHHhhcC---cceeEEecccCCCCccee
Q 006826 155 ILRSALDG---HNVCVLAYGQTGTGKTFT 180 (630)
Q Consensus 155 lV~svl~G---yN~~IfaYGqTGSGKTyT 180 (630)
=++.++.| ...+++.+|++|||||.-
T Consensus 9 gLD~il~GGlp~g~~~Li~G~pGsGKT~l 37 (484)
T TIGR02655 9 GFDDISHGGLPIGRSTLVSGTSGTGKTLF 37 (484)
T ss_pred hHHHhcCCCCCCCeEEEEEcCCCCCHHHH
Confidence 45777765 478899999999999954
No 483
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=25.17 E-value=44 Score=36.33 Aligned_cols=41 Identities=20% Similarity=0.204 Sum_probs=24.7
Q ss_pred eCCCCChhhHHH-hh-HHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 139 FNQAASQEDVFV-EV-EPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 139 F~~~atQ~eVf~-~v-~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
+-|...-.-+|. ++ ..++..+.. +.-|+-.|++|+|||...
T Consensus 39 ~~p~~d~~y~f~~~~~~~vl~~l~~--~~~ilL~G~pGtGKTtla 81 (327)
T TIGR01650 39 HVPDIDPAYLFDKATTKAICAGFAY--DRRVMVQGYHGTGKSTHI 81 (327)
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhc--CCcEEEEeCCCChHHHHH
Confidence 334444444553 23 444444443 345888999999999865
No 484
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=25.16 E-value=3.8e+02 Score=27.98 Aligned_cols=28 Identities=21% Similarity=0.455 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 437 AELEEDMREAEAECQNVRNQIKEVESLL 464 (630)
Q Consensus 437 ~~L~~el~~l~~e~~~l~~qi~~~e~~l 464 (630)
..|+.++.++..++..+..++..+...+
T Consensus 106 ~~le~el~~l~~~~~~l~~~i~~l~~~~ 133 (239)
T COG1579 106 NSLEDELAELMEEIEKLEKEIEDLKERL 133 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443333333
No 485
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=25.04 E-value=45 Score=39.21 Aligned_cols=28 Identities=11% Similarity=0.123 Sum_probs=19.3
Q ss_pred CceeeeEEecCCCCCcHHHhHHHHHHHH
Q 006826 386 GSKVLMLVHASPCEEDVGETICSLSFAK 413 (630)
Q Consensus 386 nskT~mI~~VSP~~~~~~ETlsTLrFA~ 413 (630)
..++.+.++|.|.....-.-|-.|=|.+
T Consensus 363 ~~k~tiYl~i~pd~~~~~~pLi~lf~~q 390 (606)
T PRK13897 363 KKKTTVYVGLTPDNLTRLQPLMQVFYQQ 390 (606)
T ss_pred cCCeEEEEEEchhhChhHHHHHHHHHHH
Confidence 3578899999997766555565565543
No 486
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=24.85 E-value=41 Score=40.01 Aligned_cols=20 Identities=25% Similarity=0.307 Sum_probs=16.6
Q ss_pred CcceeEEecccCCCCcceee
Q 006826 162 GHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 162 GyN~~IfaYGqTGSGKTyTM 181 (630)
+-+.-++++|+||||||..+
T Consensus 137 ~~~~hvlviApTgSGKgvg~ 156 (670)
T PRK13850 137 GEQPHSLVVAPTRAGKGVGV 156 (670)
T ss_pred CCCceEEEEecCCCCceeee
Confidence 34556889999999999988
No 487
>PRK04296 thymidine kinase; Provisional
Probab=24.82 E-value=21 Score=35.13 Aligned_cols=17 Identities=24% Similarity=0.415 Sum_probs=14.0
Q ss_pred eEEecccCCCCcceeec
Q 006826 166 CVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM~ 182 (630)
.++-+|+.|+|||..+.
T Consensus 4 i~litG~~GsGKTT~~l 20 (190)
T PRK04296 4 LEFIYGAMNSGKSTELL 20 (190)
T ss_pred EEEEECCCCCHHHHHHH
Confidence 46789999999997654
No 488
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=24.74 E-value=45 Score=38.75 Aligned_cols=35 Identities=29% Similarity=0.386 Sum_probs=21.4
Q ss_pred ChhhHHHhhHHHHHHhhcC-cceeEEecccCCCCcceee
Q 006826 144 SQEDVFVEVEPILRSALDG-HNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 144 tQ~eVf~~v~plV~svl~G-yN~~IfaYGqTGSGKTyTM 181 (630)
.|+.|-..+...+.. | ..-.++-||+.|+|||.+.
T Consensus 20 Gq~~v~~~L~~~i~~---~~~~hayLf~Gp~GtGKTt~A 55 (559)
T PRK05563 20 GQEHITKTLKNAIKQ---GKISHAYLFSGPRGTGKTSAA 55 (559)
T ss_pred CcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHH
Confidence 456665554433332 3 2334555999999999765
No 489
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=24.72 E-value=33 Score=36.51 Aligned_cols=15 Identities=27% Similarity=0.450 Sum_probs=12.8
Q ss_pred EEecccCCCCcceee
Q 006826 167 VLAYGQTGTGKTFTM 181 (630)
Q Consensus 167 IfaYGqTGSGKTyTM 181 (630)
|+..|+||||||...
T Consensus 2 i~i~G~t~~GKs~la 16 (287)
T TIGR00174 2 IFIMGPTAVGKSQLA 16 (287)
T ss_pred EEEECCCCCCHHHHH
Confidence 678899999999754
No 490
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=24.70 E-value=46 Score=41.11 Aligned_cols=20 Identities=30% Similarity=0.297 Sum_probs=15.5
Q ss_pred CcceeEEecccCCCCcceee
Q 006826 162 GHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 162 GyN~~IfaYGqTGSGKTyTM 181 (630)
|...-++..|+||||||-+.
T Consensus 470 ~~~~d~Ll~adTGsGKT~va 489 (926)
T TIGR00580 470 PRPMDRLVCGDVGFGKTEVA 489 (926)
T ss_pred cCcCCEEEECCCCccHHHHH
Confidence 44445788999999999764
No 491
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=24.69 E-value=36 Score=27.77 Aligned_cols=15 Identities=27% Similarity=0.507 Sum_probs=11.9
Q ss_pred EEecccCCCCcceee
Q 006826 167 VLAYGQTGTGKTFTM 181 (630)
Q Consensus 167 IfaYGqTGSGKTyTM 181 (630)
|+-.|..|||||..+
T Consensus 2 i~i~G~~gsGKst~~ 16 (69)
T cd02019 2 IAITGGSGSGKSTVA 16 (69)
T ss_pred EEEECCCCCCHHHHH
Confidence 445699999998765
No 492
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=24.64 E-value=32 Score=32.01 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=17.8
Q ss_pred HHHhhcCcceeEEecccCCCCcceee
Q 006826 156 LRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 156 V~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
+...+.+- ..|+-+|.-|||||+-.
T Consensus 8 l~~~l~~g-~vi~L~GdLGaGKTtf~ 32 (123)
T PF02367_consen 8 LAQILKPG-DVILLSGDLGAGKTTFV 32 (123)
T ss_dssp HHHHHSS--EEEEEEESTTSSHHHHH
T ss_pred HHHhCCCC-CEEEEECCCCCCHHHHH
Confidence 33444443 56899999999999876
No 493
>PRK14528 adenylate kinase; Provisional
Probab=24.59 E-value=32 Score=33.71 Aligned_cols=15 Identities=27% Similarity=0.510 Sum_probs=13.1
Q ss_pred EEecccCCCCcceee
Q 006826 167 VLAYGQTGTGKTFTM 181 (630)
Q Consensus 167 IfaYGqTGSGKTyTM 181 (630)
|+..|++|||||+..
T Consensus 4 i~i~G~pGsGKtt~a 18 (186)
T PRK14528 4 IIFMGPPGAGKGTQA 18 (186)
T ss_pred EEEECCCCCCHHHHH
Confidence 778999999998764
No 494
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=24.53 E-value=33 Score=33.00 Aligned_cols=16 Identities=19% Similarity=0.366 Sum_probs=13.8
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
.|+..|++|||||...
T Consensus 4 ~i~l~G~~gsGKst~a 19 (175)
T cd00227 4 IIILNGGSSAGKSSIA 19 (175)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5888999999999754
No 495
>PRK06851 hypothetical protein; Provisional
Probab=24.51 E-value=36 Score=37.52 Aligned_cols=28 Identities=25% Similarity=0.368 Sum_probs=24.2
Q ss_pred HHHHHhhcCcceeEEecccCCCCcceee
Q 006826 154 PILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 154 plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
..+++++++.+-.++--|++|+|||..|
T Consensus 204 s~~~~l~~~~~~~~~i~G~pG~GKstl~ 231 (367)
T PRK06851 204 DFVPSLTEGVKNRYFLKGRPGTGKSTML 231 (367)
T ss_pred hhHHhHhcccceEEEEeCCCCCcHHHHH
Confidence 3566777899999999999999999876
No 496
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=24.43 E-value=2.9e+02 Score=23.89 Aligned_cols=33 Identities=39% Similarity=0.504 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 437 AELEEDMREAEAECQNVRNQIKEVESLLSEKKK 469 (630)
Q Consensus 437 ~~L~~el~~l~~e~~~l~~qi~~~e~~l~e~~~ 469 (630)
..|+.++..++.++..+..+++.++..+++.+.
T Consensus 65 ~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~ 97 (106)
T PF01920_consen 65 EELEERIEKLEKEIKKLEKQLKYLEKKLKELKK 97 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555544443
No 497
>PRK07667 uridine kinase; Provisional
Probab=24.41 E-value=53 Score=32.32 Aligned_cols=29 Identities=21% Similarity=0.231 Sum_probs=0.0
Q ss_pred HhhHHHHHHhhcCcceeEEecccCCCCcce
Q 006826 150 VEVEPILRSALDGHNVCVLAYGQTGTGKTF 179 (630)
Q Consensus 150 ~~v~plV~svl~GyN~~IfaYGqTGSGKTy 179 (630)
+++...|...-.+. ..|.-.|.+|||||+
T Consensus 4 ~~~~~~~~~~~~~~-~iIgI~G~~gsGKSt 32 (193)
T PRK07667 4 NELINIMKKHKENR-FILGIDGLSRSGKTT 32 (193)
T ss_pred HHHHHHHHhcCCCC-EEEEEECCCCCCHHH
No 498
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=24.40 E-value=33 Score=33.77 Aligned_cols=13 Identities=38% Similarity=0.746 Sum_probs=0.0
Q ss_pred EEecccCCCCcce
Q 006826 167 VLAYGQTGTGKTF 179 (630)
Q Consensus 167 IfaYGqTGSGKTy 179 (630)
|+-.|++|||||+
T Consensus 3 iiilG~pGaGK~T 15 (178)
T COG0563 3 ILILGPPGAGKST 15 (178)
T ss_pred EEEECCCCCCHHH
No 499
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=24.30 E-value=2.6e+02 Score=22.87 Aligned_cols=36 Identities=28% Similarity=0.343 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 436 MAELEEDMREAEAECQNVRNQIKEVESLLSEKKKLF 471 (630)
Q Consensus 436 i~~L~~el~~l~~e~~~l~~qi~~~e~~l~e~~~~~ 471 (630)
+.+|++.|..|++||..++..+..-..-..-...++
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K~a~r~AAealF 58 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKKSASRAAAEALF 58 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 500
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=24.28 E-value=29 Score=42.39 Aligned_cols=20 Identities=25% Similarity=0.433 Sum_probs=0.0
Q ss_pred CcceeEEecccCCCCcceee
Q 006826 162 GHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 162 GyN~~IfaYGqTGSGKTyTM 181 (630)
|-++-.+..|+||||||+.|
T Consensus 486 ~d~gh~~I~G~tGsGKS~l~ 505 (852)
T PRK13891 486 RDLGHTFMFGPTGAGKSTHL 505 (852)
T ss_pred CCCCeEEEECCCCCCHHHHH
Done!