Query 006826
Match_columns 630
No_of_seqs 430 out of 2271
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 10:00:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006826.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006826hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4etp_A Kinesin-like protein KA 100.0 6.7E-96 2E-100 793.2 37.0 371 49-423 16-402 (403)
2 3u06_A Protein claret segregat 100.0 3.3E-95 1.1E-99 788.6 35.9 363 49-424 16-388 (412)
3 3cob_A Kinesin heavy chain-lik 100.0 2.7E-94 9.4E-99 771.4 29.3 333 88-428 1-337 (369)
4 2rep_A Kinesin-like protein KI 100.0 2.1E-92 7.2E-97 758.5 29.6 333 80-418 10-376 (376)
5 2h58_A Kinesin-like protein KI 100.0 1.7E-91 5.8E-96 740.8 34.5 323 89-419 1-329 (330)
6 3bfn_A Kinesin-like protein KI 100.0 1.6E-92 5.5E-97 760.7 26.9 336 86-431 15-360 (388)
7 2vvg_A Kinesin-2; motor protei 100.0 2.2E-91 7.5E-96 744.7 29.0 328 91-429 3-346 (350)
8 1t5c_A CENP-E protein, centrom 100.0 4.9E-91 1.7E-95 742.1 30.6 328 91-430 3-340 (349)
9 2y65_A Kinesin, kinesin heavy 100.0 1.3E-91 4.5E-96 750.1 25.7 326 89-429 8-344 (365)
10 3b6u_A Kinesin-like protein KI 100.0 3.8E-91 1.3E-95 747.4 28.3 337 85-430 14-365 (372)
11 1goj_A Kinesin, kinesin heavy 100.0 1.5E-90 5E-95 739.9 31.7 328 90-428 4-340 (355)
12 3lre_A Kinesin-like protein KI 100.0 8.7E-91 3E-95 742.0 29.4 325 83-418 1-355 (355)
13 3t0q_A AGR253WP; kinesin, alph 100.0 4.3E-90 1.5E-94 735.4 33.3 332 88-422 1-348 (349)
14 2owm_A Nckin3-434, related to 100.0 2.9E-90 1E-94 755.9 31.1 335 87-428 33-424 (443)
15 1x88_A Kinesin-like protein KI 100.0 1.4E-90 4.7E-95 741.4 26.0 330 89-426 5-358 (359)
16 1bg2_A Kinesin; motor protein, 100.0 3.3E-90 1.1E-94 729.6 27.2 315 89-418 4-325 (325)
17 1f9v_A Kinesin-like protein KA 100.0 2.4E-89 8.1E-94 728.9 32.3 329 90-423 1-346 (347)
18 2zfi_A Kinesin-like protein KI 100.0 1.3E-89 4.4E-94 735.7 29.9 327 91-426 3-362 (366)
19 2wbe_C Bipolar kinesin KRP-130 100.0 9.8E-90 3.4E-94 737.9 24.7 332 87-428 18-371 (373)
20 2heh_A KIF2C protein; kinesin, 100.0 2.7E-89 9.3E-94 735.5 25.3 341 63-421 23-385 (387)
21 4a14_A Kinesin, kinesin-like p 100.0 1.2E-88 4.3E-93 723.1 29.4 317 91-416 10-344 (344)
22 3nwn_A Kinesin-like protein KI 100.0 8.9E-89 3.1E-93 726.8 26.9 321 88-418 20-359 (359)
23 1v8k_A Kinesin-like protein KI 100.0 1.4E-88 4.8E-93 734.2 26.6 343 63-423 43-407 (410)
24 2nr8_A Kinesin-like protein KI 100.0 4.7E-88 1.6E-92 721.0 27.2 323 86-418 17-358 (358)
25 3gbj_A KIF13B protein; kinesin 100.0 7.6E-88 2.6E-92 719.1 28.2 319 92-418 1-350 (354)
26 1ry6_A Internal kinesin; kines 100.0 7.2E-87 2.5E-91 712.4 28.2 318 93-425 1-338 (360)
27 3dc4_A Kinesin-like protein NO 100.0 4.6E-85 1.6E-89 694.6 27.1 307 89-422 19-339 (344)
28 4h1g_A Maltose binding protein 100.0 1.2E-81 4E-86 727.3 33.2 330 81-420 363-713 (715)
29 2o0a_A S.cerevisiae chromosome 100.0 2.1E-36 7.2E-41 308.0 14.4 283 71-422 3-293 (298)
30 2kin_B Kinesin; motor protein, 100.0 6.6E-30 2.2E-34 225.1 5.8 87 344-430 1-88 (100)
31 3kin_B Kinesin heavy chain; mo 100.0 3.4E-29 1.1E-33 227.2 9.6 113 348-466 1-114 (117)
32 4etp_B Spindle POLE BODY-assoc 98.7 1.2E-07 4.1E-12 97.8 14.4 286 49-400 16-310 (333)
33 3ec2_A DNA replication protein 95.0 0.0043 1.5E-07 58.2 -0.0 50 132-181 6-55 (180)
34 4gkp_A Spindle POLE BODY-assoc 94.9 0.11 3.7E-06 53.1 10.1 264 83-420 4-271 (275)
35 2w58_A DNAI, primosome compone 93.9 0.012 4E-07 56.0 0.5 50 132-181 21-71 (202)
36 4b4t_K 26S protease regulatory 93.0 0.19 6.4E-06 54.7 8.0 41 165-205 207-264 (428)
37 2qgz_A Helicase loader, putati 92.0 0.034 1.2E-06 57.4 0.7 50 133-182 121-170 (308)
38 4b4t_J 26S protease regulatory 90.5 0.72 2.5E-05 49.7 9.1 42 164-205 182-240 (405)
39 4b4t_M 26S protease regulatory 89.6 0.64 2.2E-05 50.5 7.8 42 164-205 215-273 (434)
40 4b4t_L 26S protease subunit RP 88.0 0.63 2.2E-05 50.6 6.4 18 164-181 215-232 (437)
41 2bjv_A PSP operon transcriptio 87.0 0.16 5.4E-06 50.4 0.9 45 132-181 2-46 (265)
42 3bos_A Putative DNA replicatio 86.5 0.19 6.4E-06 48.1 1.0 45 133-181 25-69 (242)
43 1jbk_A CLPB protein; beta barr 86.4 0.28 9.4E-06 44.6 2.1 29 153-181 32-60 (195)
44 1l8q_A Chromosomal replication 85.4 0.28 9.5E-06 50.2 1.7 48 132-181 7-54 (324)
45 2p65_A Hypothetical protein PF 84.5 0.3 1E-05 44.4 1.4 29 153-181 32-60 (187)
46 2v1u_A Cell division control p 83.5 0.25 8.5E-06 50.9 0.4 47 135-181 14-61 (387)
47 3uk6_A RUVB-like 2; hexameric 83.4 0.45 1.5E-05 49.2 2.3 46 132-181 40-87 (368)
48 2r62_A Cell division protease 82.8 0.37 1.3E-05 47.6 1.3 50 132-181 7-61 (268)
49 3t15_A Ribulose bisphosphate c 82.4 0.5 1.7E-05 48.0 2.2 47 135-181 2-53 (293)
50 4b4t_I 26S protease regulatory 82.2 1.8 6.2E-05 47.0 6.5 42 164-205 216-274 (437)
51 1d2n_A N-ethylmaleimide-sensit 81.6 0.51 1.7E-05 46.9 1.8 21 161-181 61-81 (272)
52 1fnn_A CDC6P, cell division co 81.5 0.48 1.7E-05 48.9 1.7 40 142-181 19-61 (389)
53 1qde_A EIF4A, translation init 80.4 0.62 2.1E-05 44.5 1.9 26 153-180 42-67 (224)
54 3te6_A Regulatory protein SIR3 79.8 0.52 1.8E-05 49.1 1.2 31 151-181 31-62 (318)
55 3syl_A Protein CBBX; photosynt 79.6 0.84 2.9E-05 45.8 2.7 20 162-181 65-84 (309)
56 2qz4_A Paraplegin; AAA+, SPG7, 79.5 0.95 3.3E-05 44.1 3.0 44 134-181 4-56 (262)
57 2c9o_A RUVB-like 1; hexameric 79.4 0.87 3E-05 49.3 2.9 46 132-181 33-80 (456)
58 2chg_A Replication factor C sm 79.4 0.73 2.5E-05 42.8 2.0 34 145-181 22-55 (226)
59 2z4s_A Chromosomal replication 79.3 0.57 1.9E-05 50.7 1.4 48 131-181 100-147 (440)
60 2gxq_A Heat resistant RNA depe 79.3 0.72 2.5E-05 43.2 1.9 27 153-181 29-55 (207)
61 1vec_A ATP-dependent RNA helic 78.8 0.82 2.8E-05 42.9 2.1 27 153-181 31-57 (206)
62 1g8p_A Magnesium-chelatase 38 78.5 0.47 1.6E-05 48.4 0.4 44 131-181 19-62 (350)
63 2kjq_A DNAA-related protein; s 78.4 0.36 1.2E-05 44.3 -0.5 17 165-181 37-53 (149)
64 3cf0_A Transitional endoplasmi 77.2 0.53 1.8E-05 47.9 0.3 18 164-181 49-66 (301)
65 3dkp_A Probable ATP-dependent 77.0 0.91 3.1E-05 44.1 1.9 26 153-180 57-82 (245)
66 1ixz_A ATP-dependent metallopr 77.0 0.56 1.9E-05 46.0 0.4 46 132-181 12-66 (254)
67 3bor_A Human initiation factor 76.9 0.59 2E-05 45.5 0.6 27 153-181 58-84 (237)
68 2qby_B CDC6 homolog 3, cell di 76.5 0.96 3.3E-05 46.7 2.1 39 143-181 23-62 (384)
69 3h4m_A Proteasome-activating n 76.5 0.92 3.1E-05 45.0 1.8 46 132-181 13-68 (285)
70 3pfi_A Holliday junction ATP-d 76.2 1.2 4E-05 45.5 2.6 39 143-181 32-72 (338)
71 1lv7_A FTSH; alpha/beta domain 75.2 1.3 4.5E-05 43.4 2.6 46 132-181 8-62 (257)
72 2pl3_A Probable ATP-dependent 75.1 1.1 3.8E-05 43.2 1.9 27 153-181 53-79 (236)
73 3co5_A Putative two-component 75.0 1.4 4.7E-05 39.6 2.5 36 146-182 10-45 (143)
74 2qby_A CDC6 homolog 1, cell di 74.8 0.63 2.1E-05 47.7 0.1 38 144-181 24-62 (386)
75 1hqc_A RUVB; extended AAA-ATPa 74.2 1.4 4.9E-05 44.4 2.6 44 134-181 10-55 (324)
76 3iuy_A Probable ATP-dependent 74.2 1.2 4E-05 42.8 1.9 27 153-181 48-74 (228)
77 1t6n_A Probable ATP-dependent 73.7 1.3 4.3E-05 42.2 1.9 27 153-181 42-68 (220)
78 3b6e_A Interferon-induced heli 72.9 0.63 2.2E-05 43.7 -0.4 26 154-181 40-65 (216)
79 1njg_A DNA polymerase III subu 72.6 1.7 5.8E-05 40.7 2.5 17 165-181 46-62 (250)
80 1w5s_A Origin recognition comp 72.4 1.4 4.7E-05 45.9 2.0 36 146-181 28-69 (412)
81 1wrb_A DJVLGB; RNA helicase, D 72.3 1.4 4.7E-05 43.0 1.9 27 153-181 51-77 (253)
82 1p9r_A General secretion pathw 72.2 1.4 4.7E-05 47.6 2.0 28 154-181 157-184 (418)
83 3ly5_A ATP-dependent RNA helic 72.0 1.4 4.9E-05 43.7 1.9 27 153-181 82-108 (262)
84 3n70_A Transport activator; si 70.8 2.3 7.8E-05 38.1 2.9 33 148-181 9-41 (145)
85 4fcw_A Chaperone protein CLPB; 70.6 1.9 6.7E-05 43.1 2.6 38 144-181 21-64 (311)
86 3fmo_B ATP-dependent RNA helic 70.5 1.6 5.4E-05 44.5 1.9 29 153-181 120-148 (300)
87 3fe2_A Probable ATP-dependent 70.3 1.4 4.9E-05 42.8 1.5 27 153-181 57-83 (242)
88 3jvv_A Twitching mobility prot 70.3 1.4 4.9E-05 46.4 1.6 27 155-181 114-140 (356)
89 2oxc_A Probable ATP-dependent 70.3 1.6 5.6E-05 42.0 1.9 25 154-180 53-77 (230)
90 3eiq_A Eukaryotic initiation f 70.1 1.8 6E-05 44.9 2.2 27 153-181 68-94 (414)
91 3nmd_A CGMP dependent protein 70.0 18 0.00061 29.5 7.6 33 439-471 24-56 (72)
92 1iqp_A RFCS; clamp loader, ext 69.7 2.2 7.5E-05 42.7 2.7 35 144-181 29-63 (327)
93 3llm_A ATP-dependent RNA helic 69.6 1.7 5.7E-05 42.3 1.8 27 153-181 67-93 (235)
94 3ber_A Probable ATP-dependent 69.4 1.8 6E-05 42.6 1.9 27 153-181 71-97 (249)
95 3pvs_A Replication-associated 67.9 1.8 6.1E-05 47.0 1.7 39 143-181 29-67 (447)
96 3u61_B DNA polymerase accessor 67.8 2.4 8.3E-05 42.9 2.6 35 144-181 30-65 (324)
97 1xwi_A SKD1 protein; VPS4B, AA 67.7 1.1 3.6E-05 46.3 -0.1 45 133-181 9-62 (322)
98 1gvn_B Zeta; postsegregational 67.5 3.5 0.00012 41.8 3.7 36 146-181 10-50 (287)
99 1q0u_A Bstdead; DEAD protein, 67.2 1.2 4.2E-05 42.4 0.3 27 153-181 32-58 (219)
100 1u0j_A DNA replication protein 66.9 2.8 9.6E-05 42.6 2.8 29 153-181 90-121 (267)
101 1ofh_A ATP-dependent HSL prote 66.4 2.5 8.6E-05 42.0 2.4 18 164-181 50-67 (310)
102 1sxj_C Activator 1 40 kDa subu 66.2 2.2 7.7E-05 43.7 2.0 41 134-181 23-63 (340)
103 1tue_A Replication protein E1; 66.0 1.8 6.2E-05 42.6 1.1 28 155-182 47-76 (212)
104 3b9p_A CG5977-PA, isoform A; A 65.6 2.5 8.6E-05 42.1 2.2 18 164-181 54-71 (297)
105 2j0s_A ATP-dependent RNA helic 65.1 2.2 7.4E-05 44.4 1.6 27 153-181 65-91 (410)
106 1iy2_A ATP-dependent metallopr 65.0 2.3 8E-05 42.3 1.8 46 132-181 36-90 (278)
107 3d8b_A Fidgetin-like protein 1 64.9 2.5 8.7E-05 44.0 2.1 45 133-181 81-134 (357)
108 3fht_A ATP-dependent RNA helic 64.9 2.4 8.3E-05 43.7 2.0 29 153-181 53-81 (412)
109 1jr3_A DNA polymerase III subu 64.0 3.3 0.00011 42.4 2.7 37 143-181 19-55 (373)
110 2fz4_A DNA repair protein RAD2 63.0 2.6 8.9E-05 41.3 1.7 26 155-182 101-126 (237)
111 2chq_A Replication factor C sm 63.0 1.5 5.1E-05 43.8 -0.1 21 161-181 35-55 (319)
112 3pey_A ATP-dependent RNA helic 62.9 2.8 9.5E-05 42.8 2.0 29 153-181 33-61 (395)
113 2eyu_A Twitching motility prot 62.6 2.4 8.2E-05 42.5 1.4 19 163-181 24-42 (261)
114 2z0m_A 337AA long hypothetical 62.0 2.7 9.2E-05 42.0 1.6 26 154-181 23-48 (337)
115 2x8a_A Nuclear valosin-contain 62.0 0.95 3.2E-05 45.7 -1.8 49 133-181 7-61 (274)
116 3fmp_B ATP-dependent RNA helic 61.9 3.3 0.00011 44.4 2.4 28 153-180 120-147 (479)
117 2wt7_A Proto-oncogene protein 61.8 32 0.0011 26.9 7.6 40 432-471 21-60 (63)
118 1s2m_A Putative ATP-dependent 61.5 2.8 9.5E-05 43.3 1.7 27 153-181 49-75 (400)
119 1sxj_E Activator 1 40 kDa subu 60.6 1.7 5.8E-05 44.5 -0.2 15 167-181 39-53 (354)
120 1ic2_A Tropomyosin alpha chain 60.3 48 0.0016 27.2 8.7 50 435-484 28-77 (81)
121 2i4i_A ATP-dependent RNA helic 60.0 3.1 0.00011 43.2 1.7 26 154-181 44-69 (417)
122 3h1t_A Type I site-specific re 59.7 3.4 0.00012 45.7 2.1 27 155-182 190-216 (590)
123 3eie_A Vacuolar protein sortin 59.5 3.4 0.00012 42.2 1.9 17 165-181 52-68 (322)
124 1ojl_A Transcriptional regulat 59.4 4.4 0.00015 41.3 2.7 35 146-181 8-42 (304)
125 3oiy_A Reverse gyrase helicase 59.3 3.8 0.00013 42.8 2.3 26 153-180 27-52 (414)
126 1sxj_D Activator 1 41 kDa subu 59.2 3.2 0.00011 42.1 1.6 29 153-181 47-75 (353)
127 4b3f_X DNA-binding protein smu 59.1 3.2 0.00011 46.9 1.7 28 154-182 196-223 (646)
128 1in4_A RUVB, holliday junction 59.0 4.4 0.00015 41.7 2.6 44 134-181 23-68 (334)
129 1ci6_A Transcription factor AT 58.4 41 0.0014 26.4 7.6 38 434-471 23-60 (63)
130 1sxj_B Activator 1 37 kDa subu 57.2 3.8 0.00013 40.8 1.8 35 144-181 25-59 (323)
131 1rif_A DAR protein, DNA helica 57.1 2.7 9.1E-05 41.9 0.6 26 154-181 120-145 (282)
132 1qvr_A CLPB protein; coiled co 56.3 2.6 8.8E-05 49.3 0.3 42 134-182 168-209 (854)
133 1xti_A Probable ATP-dependent 56.1 3.9 0.00013 41.9 1.7 27 153-181 36-62 (391)
134 3vfd_A Spastin; ATPase, microt 56.0 4.5 0.00015 42.5 2.1 46 132-181 111-165 (389)
135 1t2k_D Cyclic-AMP-dependent tr 55.9 42 0.0014 26.0 7.2 37 433-469 21-57 (61)
136 1sxj_A Activator 1 95 kDa subu 55.6 3.3 0.00011 45.5 1.0 44 134-181 37-94 (516)
137 3hnw_A Uncharacterized protein 54.5 70 0.0024 29.1 9.6 42 435-476 76-117 (138)
138 3pxi_A Negative regulator of g 54.5 5.6 0.00019 45.7 2.8 38 144-181 495-538 (758)
139 2oap_1 GSPE-2, type II secreti 54.3 4.2 0.00014 45.0 1.6 19 161-181 259-277 (511)
140 3hws_A ATP-dependent CLP prote 53.2 4.7 0.00016 41.7 1.7 18 164-181 51-68 (363)
141 3fho_A ATP-dependent RNA helic 53.2 4.6 0.00016 44.0 1.7 26 156-181 150-175 (508)
142 3hu3_A Transitional endoplasmi 52.9 3.3 0.00011 45.5 0.5 20 162-181 236-255 (489)
143 4a2p_A RIG-I, retinoic acid in 52.8 5 0.00017 43.2 1.9 26 154-181 14-39 (556)
144 3mq7_A Bone marrow stromal ant 52.4 77 0.0026 28.1 8.9 33 440-472 70-102 (121)
145 2qp9_X Vacuolar protein sortin 52.2 5.3 0.00018 41.6 1.9 17 165-181 85-101 (355)
146 2ewv_A Twitching motility prot 52.0 4.5 0.00015 42.6 1.4 26 156-181 128-153 (372)
147 1um8_A ATP-dependent CLP prote 51.6 4.7 0.00016 41.9 1.4 18 164-181 72-89 (376)
148 1fuu_A Yeast initiation factor 51.5 3.4 0.00012 42.3 0.3 27 153-181 49-75 (394)
149 2db3_A ATP-dependent RNA helic 51.4 6.5 0.00022 41.8 2.5 27 153-181 84-110 (434)
150 4egx_A Kinesin-like protein KI 51.4 17 0.0006 34.6 5.3 21 487-507 66-86 (184)
151 3e70_C DPA, signal recognition 51.1 9.1 0.00031 39.7 3.5 18 164-181 129-146 (328)
152 1r6b_X CLPA protein; AAA+, N-t 51.0 7.2 0.00025 44.6 3.0 38 144-181 462-505 (758)
153 2jee_A YIIU; FTSZ, septum, coi 50.8 79 0.0027 26.3 8.3 56 430-485 9-67 (81)
154 1qvr_A CLPB protein; coiled co 50.7 7 0.00024 45.6 2.8 38 144-181 562-605 (854)
155 3tbk_A RIG-I helicase domain; 50.5 5.8 0.0002 42.6 1.9 26 154-181 11-36 (555)
156 2r44_A Uncharacterized protein 50.4 3.5 0.00012 41.9 0.2 23 157-181 41-63 (331)
157 2dgc_A Protein (GCN4); basic d 50.3 25 0.00085 27.8 5.1 35 431-465 27-61 (63)
158 3b9q_A Chloroplast SRP recepto 50.3 8.3 0.00028 39.4 3.0 17 165-181 101-117 (302)
159 1hv8_A Putative ATP-dependent 50.1 5.1 0.00018 40.3 1.4 27 154-181 35-61 (367)
160 1zxa_A CGMP-dependent protein 49.7 28 0.00094 28.0 5.3 35 430-464 21-55 (67)
161 3i5x_A ATP-dependent RNA helic 49.6 7.7 0.00026 42.4 2.8 28 153-180 100-127 (563)
162 3pxg_A Negative regulator of g 49.6 5.9 0.0002 42.9 1.8 30 153-182 190-219 (468)
163 1n0w_A DNA repair protein RAD5 49.5 5.7 0.00019 37.9 1.5 28 154-181 11-41 (243)
164 3hnw_A Uncharacterized protein 49.2 50 0.0017 30.1 7.7 35 435-469 83-117 (138)
165 2fwr_A DNA repair protein RAD2 48.9 6.2 0.00021 42.0 1.8 26 154-181 100-125 (472)
166 2zan_A Vacuolar protein sortin 48.8 5.3 0.00018 43.0 1.3 46 132-181 130-184 (444)
167 2v1x_A ATP-dependent DNA helic 48.6 8.5 0.00029 43.1 3.0 27 153-181 50-76 (591)
168 4b4t_H 26S protease regulatory 48.4 9.2 0.00032 41.9 3.1 42 164-205 243-301 (467)
169 1dh3_A Transcription factor CR 48.3 17 0.00059 27.9 3.8 35 430-464 18-52 (55)
170 2ce7_A Cell division protein F 48.3 8 0.00027 42.3 2.6 46 132-181 12-66 (476)
171 4gl2_A Interferon-induced heli 47.5 6.8 0.00023 44.0 1.9 27 153-181 13-39 (699)
172 3oja_B Anopheles plasmodium-re 47.3 53 0.0018 36.0 9.2 7 490-496 572-578 (597)
173 1hjb_A Ccaat/enhancer binding 47.3 54 0.0018 27.6 7.0 38 435-472 37-74 (87)
174 3upu_A ATP-dependent DNA helic 47.1 6.8 0.00023 42.1 1.8 36 142-181 27-62 (459)
175 1w36_D RECD, exodeoxyribonucle 47.0 6 0.0002 44.5 1.4 26 155-182 157-182 (608)
176 3b85_A Phosphate starvation-in 46.6 7.1 0.00024 37.7 1.7 26 154-181 14-39 (208)
177 3lw7_A Adenylate kinase relate 46.2 5.6 0.00019 35.4 0.8 16 166-181 3-18 (179)
178 2w0m_A SSO2452; RECA, SSPF, un 46.1 6.9 0.00024 36.7 1.5 28 154-181 10-40 (235)
179 1ci6_A Transcription factor AT 46.1 52 0.0018 25.8 6.4 34 433-466 29-62 (63)
180 2p5t_B PEZT; postsegregational 45.9 13 0.00043 36.5 3.5 29 153-181 16-49 (253)
181 2dhr_A FTSH; AAA+ protein, hex 45.5 9.3 0.00032 42.1 2.6 46 132-181 27-81 (499)
182 4gp7_A Metallophosphoesterase; 45.3 4.9 0.00017 37.0 0.3 17 166-182 11-27 (171)
183 1wp9_A ATP-dependent RNA helic 44.7 7.4 0.00025 40.3 1.6 27 153-182 15-41 (494)
184 2jlq_A Serine protease subunit 44.6 6.6 0.00022 42.2 1.2 25 155-180 11-35 (451)
185 2cvh_A DNA repair and recombin 44.3 7.7 0.00026 36.3 1.5 28 154-181 7-37 (220)
186 1jnm_A Proto-oncogene C-JUN; B 44.2 33 0.0011 26.7 4.9 36 432-467 20-55 (62)
187 2gk6_A Regulator of nonsense t 43.6 7.6 0.00026 43.7 1.6 27 154-182 187-213 (624)
188 2ykg_A Probable ATP-dependent 43.5 9.8 0.00033 42.7 2.5 27 153-181 19-45 (696)
189 2yhs_A FTSY, cell division pro 43.2 9.1 0.00031 42.3 2.0 16 166-181 295-310 (503)
190 2og2_A Putative signal recogni 43.0 13 0.00044 39.2 3.1 17 165-181 158-174 (359)
191 2px0_A Flagellar biosynthesis 43.0 8.2 0.00028 39.3 1.6 16 166-181 107-122 (296)
192 1kd8_A GABH AIV, GCN4 acid bas 42.5 33 0.0011 24.1 4.0 30 436-465 3-32 (36)
193 4ag6_A VIRB4 ATPase, type IV s 42.1 5.7 0.00019 41.6 0.2 16 166-181 37-52 (392)
194 2akf_A Coronin-1A; coiled coil 41.9 31 0.0011 23.2 3.6 26 438-463 3-28 (32)
195 3nmd_A CGMP dependent protein 41.8 92 0.0032 25.3 7.2 15 438-452 44-58 (72)
196 3lfu_A DNA helicase II; SF1 he 41.8 7.3 0.00025 43.4 1.0 20 163-182 21-40 (647)
197 1kd8_B GABH BLL, GCN4 acid bas 41.5 58 0.002 22.9 5.1 30 436-465 3-32 (36)
198 2w6b_A RHO guanine nucleotide 41.5 63 0.0021 24.9 5.8 36 51-86 11-46 (56)
199 3c3f_A Alpha/beta peptide with 41.4 33 0.0011 23.8 3.8 29 436-464 3-31 (34)
200 3tr0_A Guanylate kinase, GMP k 41.1 6.2 0.00021 36.7 0.3 16 166-181 9-24 (205)
201 3sqw_A ATP-dependent RNA helic 40.9 13 0.00043 41.1 2.8 28 153-180 49-76 (579)
202 4a74_A DNA repair and recombin 40.8 9.4 0.00032 35.9 1.5 28 154-181 12-42 (231)
203 1r6b_X CLPA protein; AAA+, N-t 40.5 8.9 0.0003 43.9 1.5 30 153-182 196-225 (758)
204 3efg_A Protein SLYX homolog; x 40.5 98 0.0033 25.4 7.4 46 433-478 13-58 (78)
205 1c4o_A DNA nucleotide excision 40.4 10 0.00035 43.1 2.0 45 133-182 2-46 (664)
206 2qag_C Septin-7; cell cycle, c 40.3 6.6 0.00022 42.3 0.4 24 158-181 25-48 (418)
207 1e9r_A Conjugal transfer prote 40.3 5.9 0.0002 42.1 -0.0 18 164-181 53-70 (437)
208 1rz3_A Hypothetical protein rb 40.3 10 0.00036 35.6 1.8 29 153-181 8-39 (201)
209 1ly1_A Polynucleotide kinase; 40.1 7.8 0.00027 35.0 0.8 17 165-181 3-19 (181)
210 3kl4_A SRP54, signal recogniti 40.1 13 0.00045 40.1 2.7 17 165-181 98-114 (433)
211 1kgd_A CASK, peripheral plasma 39.5 6.7 0.00023 36.3 0.2 16 166-181 7-22 (180)
212 3tau_A Guanylate kinase, GMP k 39.3 7.7 0.00027 36.8 0.7 16 166-181 10-25 (208)
213 3c3g_A Alpha/beta peptide with 39.3 38 0.0013 23.4 3.8 28 437-464 3-30 (33)
214 3c8u_A Fructokinase; YP_612366 39.1 12 0.0004 35.4 1.9 29 153-181 9-39 (208)
215 3u1c_A Tropomyosin alpha-1 cha 39.1 1.8E+02 0.006 24.8 9.2 43 439-481 35-77 (101)
216 1lkx_A Myosin IE heavy chain; 39.1 13 0.00044 42.7 2.5 35 147-181 76-111 (697)
217 2qnr_A Septin-2, protein NEDD5 39.0 6.4 0.00022 40.1 0.0 24 158-181 12-35 (301)
218 3dm5_A SRP54, signal recogniti 38.7 14 0.00048 40.1 2.6 19 164-182 100-118 (443)
219 2xdj_A Uncharacterized protein 38.6 1.7E+02 0.0058 24.3 9.1 41 436-476 22-62 (83)
220 3trf_A Shikimate kinase, SK; a 38.0 8.8 0.0003 35.1 0.8 16 166-181 7-22 (185)
221 3a7p_A Autophagy protein 16; c 38.0 78 0.0027 29.3 7.1 6 368-373 20-25 (152)
222 3a00_A Guanylate kinase, GMP k 37.9 7.3 0.00025 36.2 0.2 15 167-181 4-18 (186)
223 2dr3_A UPF0273 protein PH0284; 37.8 9.5 0.00033 36.3 1.0 26 156-181 12-40 (247)
224 1zp6_A Hypothetical protein AT 37.7 7.1 0.00024 35.9 0.1 17 165-181 10-26 (191)
225 1qhx_A CPT, protein (chloramph 37.6 9 0.00031 34.7 0.8 17 165-181 4-20 (178)
226 3pxi_A Negative regulator of g 37.6 16 0.00053 42.0 2.9 30 153-182 190-219 (758)
227 2qen_A Walker-type ATPase; unk 37.1 12 0.00041 37.5 1.7 17 165-181 32-48 (350)
228 1w9i_A Myosin II heavy chain; 37.1 14 0.00049 42.8 2.5 35 147-181 154-189 (770)
229 2v26_A Myosin VI; calmodulin-b 36.9 14 0.00049 42.9 2.5 36 146-181 121-157 (784)
230 2r8r_A Sensor protein; KDPD, P 36.9 7.5 0.00026 38.6 0.1 19 164-182 6-24 (228)
231 1gm5_A RECG; helicase, replica 36.8 12 0.00042 43.4 1.9 39 140-181 368-406 (780)
232 1lvg_A Guanylate kinase, GMP k 36.7 7.6 0.00026 36.7 0.1 16 166-181 6-21 (198)
233 3iij_A Coilin-interacting nucl 36.7 9.2 0.00031 34.9 0.7 17 165-181 12-28 (180)
234 4a2q_A RIG-I, retinoic acid in 36.6 12 0.00043 43.0 1.9 27 153-181 254-280 (797)
235 3u1c_A Tropomyosin alpha-1 cha 36.5 1.8E+02 0.0061 24.8 8.9 35 435-469 45-79 (101)
236 2lw1_A ABC transporter ATP-bin 36.4 1.1E+02 0.0036 25.5 7.2 51 435-485 23-79 (89)
237 1kk8_A Myosin heavy chain, str 35.9 15 0.00051 43.1 2.5 35 147-181 151-186 (837)
238 3sop_A Neuronal-specific septi 35.4 8.6 0.00029 38.6 0.3 19 163-181 1-19 (270)
239 4a2w_A RIG-I, retinoic acid in 35.3 12 0.00043 44.1 1.7 26 154-181 255-280 (936)
240 1ye8_A Protein THEP1, hypothet 35.3 8.5 0.00029 36.0 0.2 15 167-181 3-17 (178)
241 2j41_A Guanylate kinase; GMP, 35.3 8.7 0.0003 35.6 0.3 16 166-181 8-23 (207)
242 2oxj_A Hybrid alpha/beta pepti 35.2 62 0.0021 22.4 4.4 29 436-464 3-31 (34)
243 2xzl_A ATP-dependent helicase 35.1 12 0.00041 43.6 1.5 27 154-182 367-393 (802)
244 2orw_A Thymidine kinase; TMTK, 35.0 6.6 0.00023 36.9 -0.6 17 166-182 5-21 (184)
245 2b8t_A Thymidine kinase; deoxy 35.0 7.2 0.00025 38.3 -0.4 18 165-182 13-30 (223)
246 2wq1_A General control protein 35.0 36 0.0012 23.5 3.2 27 437-463 3-29 (33)
247 2wt7_B Transcription factor MA 35.0 95 0.0033 26.3 6.6 43 50-92 48-90 (90)
248 1w7j_A Myosin VA; motor protei 34.9 16 0.00055 42.6 2.5 35 147-181 138-173 (795)
249 4a4z_A Antiviral helicase SKI2 34.6 17 0.00058 43.4 2.7 25 154-180 46-70 (997)
250 1g8x_A Myosin II heavy chain f 34.5 16 0.00053 43.9 2.3 36 146-181 153-189 (1010)
251 4db1_A Myosin-7; S1DC, cardiac 34.5 17 0.00057 42.4 2.5 35 147-181 153-188 (783)
252 1gku_B Reverse gyrase, TOP-RG; 34.5 16 0.00056 43.7 2.6 25 153-179 62-86 (1054)
253 2wjy_A Regulator of nonsense t 34.4 13 0.00044 43.4 1.6 27 154-182 363-389 (800)
254 1gd2_E Transcription factor PA 34.4 1.1E+02 0.0036 24.7 6.6 26 432-457 27-52 (70)
255 2ycu_A Non muscle myosin 2C, a 34.3 16 0.00056 43.6 2.5 35 147-181 128-163 (995)
256 2ehv_A Hypothetical protein PH 34.2 9.1 0.00031 36.5 0.2 16 166-181 32-47 (251)
257 2bdt_A BH3686; alpha-beta prot 34.2 9.1 0.00031 35.3 0.2 16 166-181 4-19 (189)
258 1a5t_A Delta prime, HOLB; zinc 34.0 18 0.00062 37.0 2.5 27 155-181 14-41 (334)
259 3nbx_X ATPase RAVA; AAA+ ATPas 33.9 16 0.00054 40.2 2.1 27 153-181 32-58 (500)
260 1fxk_C Protein (prefoldin); ar 33.9 1.1E+02 0.0039 26.8 7.5 42 427-468 88-129 (133)
261 2oca_A DAR protein, ATP-depend 33.8 11 0.00039 40.4 0.9 26 155-182 121-146 (510)
262 3e1s_A Exodeoxyribonuclease V, 33.7 14 0.00047 41.3 1.6 28 153-182 195-222 (574)
263 4anj_A Unconventional myosin-V 33.6 17 0.00059 43.6 2.5 36 146-181 125-161 (1052)
264 1rj9_A FTSY, signal recognitio 33.4 11 0.00036 38.7 0.6 17 165-181 103-119 (304)
265 3lnc_A Guanylate kinase, GMP k 33.3 11 0.00038 36.1 0.6 16 166-181 29-44 (231)
266 2wvr_A Geminin; DNA replicatio 33.3 1.8E+02 0.0063 28.1 9.1 19 444-462 118-136 (209)
267 2fna_A Conserved hypothetical 33.3 14 0.00047 37.0 1.4 25 153-181 23-47 (357)
268 2gza_A Type IV secretion syste 33.3 9 0.00031 40.1 0.0 19 161-181 174-192 (361)
269 1kht_A Adenylate kinase; phosp 33.0 12 0.00039 34.1 0.7 17 165-181 4-20 (192)
270 2pt7_A CAG-ALFA; ATPase, prote 32.8 9.2 0.00032 39.5 0.0 19 161-181 170-188 (330)
271 3vaa_A Shikimate kinase, SK; s 32.8 12 0.00041 35.0 0.8 16 166-181 27-42 (199)
272 2yy0_A C-MYC-binding protein; 32.8 71 0.0024 24.3 5.0 25 438-462 23-47 (53)
273 2l5g_B Putative uncharacterize 32.7 1.1E+02 0.0036 22.4 5.5 29 439-467 7-35 (42)
274 3cve_A Homer protein homolog 1 32.7 1.9E+02 0.0065 23.5 7.8 26 435-460 8-33 (72)
275 1wt6_A Myotonin-protein kinase 32.7 86 0.003 26.0 5.8 28 439-466 43-70 (81)
276 3tnu_B Keratin, type II cytosk 32.6 1.2E+02 0.0042 26.8 7.5 32 436-467 38-69 (129)
277 1gu4_A CAAT/enhancer binding p 32.5 69 0.0024 26.4 5.3 36 435-470 37-72 (78)
278 3cve_A Homer protein homolog 1 32.4 1.2E+02 0.0042 24.6 6.6 30 439-468 5-34 (72)
279 2bni_A General control protein 32.4 47 0.0016 23.1 3.5 29 436-464 3-31 (34)
280 2r2v_A GCN4 leucine zipper; co 32.3 68 0.0023 22.3 4.2 30 436-465 3-32 (34)
281 1oyw_A RECQ helicase, ATP-depe 32.2 11 0.00037 41.4 0.4 27 153-181 31-57 (523)
282 1kag_A SKI, shikimate kinase I 32.1 12 0.00042 33.6 0.7 16 166-181 6-21 (173)
283 3m91_A Proteasome-associated A 32.1 1.6E+02 0.0056 22.2 6.9 11 447-457 29-39 (51)
284 3m48_A General control protein 32.0 51 0.0017 22.8 3.5 26 438-463 4-29 (33)
285 3u59_A Tropomyosin beta chain; 32.0 2.3E+02 0.0079 23.9 8.9 33 443-475 39-71 (101)
286 2yy0_A C-MYC-binding protein; 32.0 86 0.0029 23.8 5.3 25 443-467 21-45 (53)
287 2ze6_A Isopentenyl transferase 31.8 12 0.00041 36.9 0.7 15 166-180 3-17 (253)
288 1znw_A Guanylate kinase, GMP k 31.7 11 0.00036 35.7 0.2 22 158-181 16-37 (207)
289 3kb2_A SPBC2 prophage-derived 31.5 13 0.00045 33.1 0.8 16 166-181 3-18 (173)
290 1uf9_A TT1252 protein; P-loop, 31.3 14 0.0005 33.9 1.1 21 161-181 5-25 (203)
291 1uaa_A REP helicase, protein ( 31.3 13 0.00044 41.9 0.9 20 163-182 14-33 (673)
292 2zj8_A DNA helicase, putative 31.2 13 0.00046 42.1 1.0 25 155-181 31-56 (720)
293 2i3b_A HCR-ntpase, human cance 30.9 11 0.00037 35.7 0.2 16 166-181 3-18 (189)
294 3oja_A Leucine-rich immune mol 30.8 1.5E+02 0.0052 31.6 9.3 10 319-328 238-247 (487)
295 4etp_A Kinesin-like protein KA 30.6 1.4E+02 0.0047 31.8 8.7 46 435-480 11-56 (403)
296 2v6i_A RNA helicase; membrane, 30.6 16 0.00055 38.9 1.4 16 166-181 4-19 (431)
297 2z83_A Helicase/nucleoside tri 30.6 14 0.00049 39.7 1.0 15 166-180 23-37 (459)
298 1z6g_A Guanylate kinase; struc 30.5 11 0.00038 36.1 0.1 15 167-181 26-40 (218)
299 3cf2_A TER ATPase, transitiona 30.5 21 0.00073 41.6 2.5 72 133-204 201-295 (806)
300 1zu4_A FTSY; GTPase, signal re 30.4 18 0.00061 37.3 1.7 16 166-181 107-122 (320)
301 1odf_A YGR205W, hypothetical 3 30.4 25 0.00085 35.6 2.7 20 162-181 29-48 (290)
302 1yks_A Genome polyprotein [con 30.1 14 0.00049 39.4 1.0 21 159-181 5-25 (440)
303 2hy6_A General control protein 29.8 66 0.0022 22.3 3.8 29 436-464 3-31 (34)
304 2dfs_A Myosin-5A; myosin-V, in 29.8 91 0.0031 37.6 7.9 20 161-180 153-172 (1080)
305 1xx6_A Thymidine kinase; NESG, 29.7 9.7 0.00033 36.3 -0.4 17 166-182 10-26 (191)
306 3rc3_A ATP-dependent RNA helic 29.7 13 0.00046 42.4 0.7 21 158-180 151-171 (677)
307 1tev_A UMP-CMP kinase; ploop, 29.7 15 0.0005 33.5 0.8 16 166-181 5-20 (196)
308 1knq_A Gluconate kinase; ALFA/ 29.5 12 0.00042 33.8 0.3 16 166-181 10-25 (175)
309 3kta_A Chromosome segregation 29.4 12 0.00039 34.3 0.0 16 166-181 28-43 (182)
310 1t2k_D Cyclic-AMP-dependent tr 29.3 1.5E+02 0.0051 22.7 6.5 29 434-462 29-57 (61)
311 1moz_A ARL1, ADP-ribosylation 29.3 16 0.00055 32.7 1.0 29 153-181 6-35 (183)
312 2va8_A SSO2462, SKI2-type heli 29.2 20 0.00067 40.6 1.9 25 155-181 38-63 (715)
313 2qag_A Septin-2, protein NEDD5 29.1 15 0.00052 38.3 0.9 24 158-181 31-54 (361)
314 3cm0_A Adenylate kinase; ATP-b 29.0 15 0.00053 33.4 0.8 16 166-181 6-21 (186)
315 1j8m_F SRP54, signal recogniti 29.0 31 0.001 35.1 3.1 16 166-181 100-115 (297)
316 2rhm_A Putative kinase; P-loop 28.9 14 0.00049 33.7 0.6 17 165-181 6-22 (193)
317 2p6r_A Afuhel308 helicase; pro 28.7 13 0.00045 42.0 0.4 23 157-181 35-57 (702)
318 4ddu_A Reverse gyrase; topoiso 28.6 24 0.00081 42.7 2.6 26 153-180 84-109 (1104)
319 3tnu_A Keratin, type I cytoske 28.6 1.2E+02 0.004 27.1 6.6 26 438-463 42-67 (131)
320 2qor_A Guanylate kinase; phosp 28.5 15 0.00052 34.4 0.7 16 166-181 14-29 (204)
321 3uie_A Adenylyl-sulfate kinase 28.4 17 0.00058 34.0 1.0 18 164-181 25-42 (200)
322 2ged_A SR-beta, signal recogni 28.4 17 0.00057 33.1 1.0 35 147-181 28-65 (193)
323 3t5d_A Septin-7; GTP-binding p 28.4 13 0.00045 36.8 0.3 21 161-181 5-25 (274)
324 1y63_A LMAJ004144AAA protein; 28.3 15 0.00052 33.9 0.7 16 166-181 12-27 (184)
325 1e6c_A Shikimate kinase; phosp 28.2 15 0.00053 32.9 0.7 16 166-181 4-19 (173)
326 2wt7_A Proto-oncogene protein 27.8 1.9E+02 0.0064 22.4 6.9 29 435-463 31-59 (63)
327 3cvf_A Homer-3, homer protein 27.6 2.5E+02 0.0084 23.2 7.8 24 436-459 15-38 (79)
328 2xgj_A ATP-dependent RNA helic 27.6 23 0.00079 42.3 2.2 27 153-181 92-118 (1010)
329 1vma_A Cell division protein F 27.6 14 0.00047 38.0 0.2 17 165-181 105-121 (306)
330 1gd2_E Transcription factor PA 27.4 1.3E+02 0.0045 24.2 6.0 32 433-464 35-66 (70)
331 4e61_A Protein BIM1; EB1-like 27.4 2.1E+02 0.0073 24.9 7.7 9 445-453 22-30 (106)
332 3l9o_A ATP-dependent RNA helic 27.3 20 0.0007 43.2 1.7 26 153-180 190-215 (1108)
333 1f2t_A RAD50 ABC-ATPase; DNA d 27.2 15 0.00052 33.2 0.4 16 166-181 25-40 (149)
334 2v3c_C SRP54, signal recogniti 27.0 29 0.00098 37.4 2.6 18 165-182 100-117 (432)
335 2xdj_A Uncharacterized protein 26.8 2E+02 0.007 23.8 7.2 37 432-468 25-61 (83)
336 2bbw_A Adenylate kinase 4, AK4 26.8 14 0.0005 35.7 0.2 17 165-181 28-44 (246)
337 2r2a_A Uncharacterized protein 26.7 17 0.00057 34.8 0.7 16 166-181 7-22 (199)
338 2vli_A Antibiotic resistance p 26.6 18 0.00062 32.7 0.9 17 165-181 6-22 (183)
339 1nks_A Adenylate kinase; therm 26.6 16 0.00056 33.1 0.5 16 166-181 3-18 (194)
340 2iyv_A Shikimate kinase, SK; t 26.6 17 0.00058 33.2 0.7 15 166-180 4-18 (184)
341 2v66_B Nuclear distribution pr 26.5 3.3E+02 0.011 23.9 9.0 48 435-482 36-83 (111)
342 1uii_A Geminin; human, DNA rep 26.5 2.8E+02 0.0096 23.1 8.5 36 436-471 41-76 (83)
343 2bwj_A Adenylate kinase 5; pho 26.0 17 0.0006 33.3 0.6 16 166-181 14-29 (199)
344 1go4_E MAD1 (mitotic arrest de 25.8 1E+02 0.0035 26.6 5.3 31 435-465 13-43 (100)
345 2qmh_A HPR kinase/phosphorylas 25.7 18 0.00063 35.2 0.8 22 160-181 30-51 (205)
346 1uo4_A General control protein 25.7 53 0.0018 22.8 2.8 27 437-463 4-30 (34)
347 1via_A Shikimate kinase; struc 25.7 18 0.00063 32.7 0.7 16 166-181 6-21 (175)
348 2wt7_B Transcription factor MA 25.6 2.2E+02 0.0075 24.1 7.2 33 435-467 49-81 (90)
349 2pt5_A Shikimate kinase, SK; a 25.5 19 0.00064 32.2 0.7 16 166-181 2-17 (168)
350 4eun_A Thermoresistant glucoki 25.4 16 0.00055 34.1 0.3 16 166-181 31-46 (200)
351 3asz_A Uridine kinase; cytidin 25.4 15 0.00051 34.3 0.0 16 166-181 8-23 (211)
352 3t61_A Gluconokinase; PSI-biol 25.4 19 0.00065 33.5 0.7 18 164-181 18-35 (202)
353 2iut_A DNA translocase FTSK; n 25.3 15 0.00052 41.2 0.1 17 165-181 215-231 (574)
354 1ypw_A Transitional endoplasmi 25.2 26 0.00088 40.8 2.0 72 132-203 200-294 (806)
355 1deb_A APC protein, adenomatou 25.0 2.2E+02 0.0077 21.5 7.4 38 434-471 10-47 (54)
356 2xau_A PRE-mRNA-splicing facto 24.9 25 0.00085 40.7 1.7 24 156-180 102-125 (773)
357 2w00_A HSDR, R.ECOR124I; ATP-b 24.9 17 0.00059 43.6 0.4 16 167-182 303-318 (1038)
358 3a8t_A Adenylate isopentenyltr 24.9 21 0.00072 37.4 1.0 15 166-180 42-56 (339)
359 3u59_A Tropomyosin beta chain; 24.9 3.1E+02 0.011 23.1 9.2 24 439-462 49-72 (101)
360 2zqm_A Prefoldin beta subunit 24.8 1.9E+02 0.0066 24.5 7.2 33 439-471 75-107 (117)
361 1hjb_A Ccaat/enhancer binding 24.5 1.3E+02 0.0046 25.2 5.7 41 53-93 39-79 (87)
362 3a4m_A L-seryl-tRNA(SEC) kinas 24.5 20 0.00069 35.2 0.8 17 165-181 5-21 (260)
363 1ukz_A Uridylate kinase; trans 24.5 20 0.00067 33.3 0.7 17 165-181 16-32 (203)
364 1qf9_A UMP/CMP kinase, protein 24.4 19 0.00064 32.7 0.5 16 166-181 8-23 (194)
365 2jee_A YIIU; FTSZ, septum, coi 24.4 3E+02 0.01 22.8 9.1 22 433-454 26-47 (81)
366 1htw_A HI0065; nucleotide-bind 24.2 17 0.00059 33.3 0.2 16 166-181 35-50 (158)
367 1zd8_A GTP:AMP phosphotransfer 24.2 19 0.00064 34.3 0.5 17 165-181 8-24 (227)
368 2c95_A Adenylate kinase 1; tra 24.2 20 0.00068 32.8 0.6 17 165-181 10-26 (196)
369 3ol1_A Vimentin; structural ge 24.0 2.7E+02 0.0093 24.3 8.1 14 397-410 13-26 (119)
370 1nkp_B MAX protein, MYC proto- 24.0 1.1E+02 0.0038 24.8 5.2 29 436-464 49-77 (83)
371 3m6a_A ATP-dependent protease 24.0 18 0.0006 40.1 0.2 18 164-181 108-125 (543)
372 1s96_A Guanylate kinase, GMP k 23.9 18 0.00061 35.0 0.3 16 166-181 18-33 (219)
373 4e61_A Protein BIM1; EB1-like 23.9 1.2E+02 0.0041 26.5 5.4 37 53-89 14-50 (106)
374 1a93_B MAX protein, coiled coi 23.9 99 0.0034 21.6 3.9 22 437-458 10-31 (34)
375 3fb4_A Adenylate kinase; psych 23.9 21 0.0007 33.5 0.7 15 167-181 3-17 (216)
376 1aky_A Adenylate kinase; ATP:A 23.8 20 0.0007 33.8 0.7 16 166-181 6-21 (220)
377 3twe_A Alpha4H; unknown functi 23.8 1.3E+02 0.0045 19.2 4.1 20 54-73 5-24 (27)
378 3foz_A TRNA delta(2)-isopenten 23.7 23 0.0008 36.7 1.1 17 165-181 11-27 (316)
379 3tif_A Uncharacterized ABC tra 23.7 18 0.00061 35.4 0.2 16 166-181 33-48 (235)
380 2zts_A Putative uncharacterize 23.7 23 0.00077 33.6 0.9 26 156-181 19-47 (251)
381 3crm_A TRNA delta(2)-isopenten 23.7 27 0.00091 36.3 1.5 16 165-180 6-21 (323)
382 2eqb_B RAB guanine nucleotide 23.6 3.5E+02 0.012 23.2 8.6 23 436-458 14-36 (97)
383 2i1q_A DNA repair and recombin 23.6 32 0.0011 34.8 2.1 28 154-181 85-115 (322)
384 1wlq_A Geminin; coiled-coil; 2 23.4 3.2E+02 0.011 22.7 8.0 37 435-471 32-68 (83)
385 3mq7_A Bone marrow stromal ant 23.2 3.1E+02 0.01 24.3 7.9 10 409-418 17-26 (121)
386 1c9k_A COBU, adenosylcobinamid 23.1 22 0.00076 33.7 0.7 14 167-180 2-15 (180)
387 3umf_A Adenylate kinase; rossm 23.1 22 0.00076 34.6 0.8 35 166-200 31-65 (217)
388 3tqc_A Pantothenate kinase; bi 23.1 35 0.0012 35.3 2.3 16 166-181 94-109 (321)
389 2d7d_A Uvrabc system protein B 23.1 29 0.001 39.3 1.8 86 132-221 4-97 (661)
390 1v5w_A DMC1, meiotic recombina 23.1 38 0.0013 34.9 2.6 28 154-181 109-139 (343)
391 2vl7_A XPD; helicase, unknown 22.9 33 0.0011 37.7 2.2 36 141-181 8-43 (540)
392 2z43_A DNA repair and recombin 22.9 32 0.0011 35.1 1.9 28 154-181 94-124 (324)
393 1f6b_A SAR1; gtpases, N-termin 22.7 22 0.00074 33.0 0.6 28 154-181 14-42 (198)
394 3sr0_A Adenylate kinase; phosp 22.7 22 0.00076 34.1 0.7 34 167-200 3-36 (206)
395 3iv1_A Tumor susceptibility ge 22.7 3.2E+02 0.011 22.5 7.6 17 438-454 15-31 (78)
396 2cdn_A Adenylate kinase; phosp 22.7 26 0.0009 32.4 1.2 20 162-181 18-37 (201)
397 2ius_A DNA translocase FTSK; n 22.6 19 0.00064 39.9 0.1 17 165-181 168-184 (512)
398 1pjr_A PCRA; DNA repair, DNA r 22.4 22 0.00074 40.7 0.6 19 164-182 24-42 (724)
399 3dl0_A Adenylate kinase; phosp 22.4 23 0.00078 33.2 0.7 15 167-181 3-17 (216)
400 1nkp_A C-MYC, MYC proto-oncoge 22.3 1.6E+02 0.0055 24.5 5.9 40 53-92 48-87 (88)
401 3exa_A TRNA delta(2)-isopenten 22.3 25 0.00085 36.6 1.0 16 166-181 5-20 (322)
402 2yvu_A Probable adenylyl-sulfa 22.3 26 0.00088 32.1 1.0 17 165-181 14-30 (186)
403 1ak2_A Adenylate kinase isoenz 22.3 23 0.00078 34.0 0.7 17 165-181 17-33 (233)
404 3crv_A XPD/RAD3 related DNA he 22.1 32 0.0011 37.8 1.9 25 155-181 15-39 (551)
405 3lay_A Zinc resistance-associa 22.0 4.3E+02 0.015 24.8 9.4 20 438-457 82-101 (175)
406 2zdi_C Prefoldin subunit alpha 21.9 2E+02 0.0068 25.9 7.0 42 427-468 98-139 (151)
407 3o8b_A HCV NS3 protease/helica 21.9 27 0.00092 39.9 1.2 16 166-181 234-249 (666)
408 1fmh_A General control protein 21.8 1.8E+02 0.0063 19.3 4.8 27 436-462 3-29 (33)
409 4a15_A XPD helicase, ATP-depen 21.8 34 0.0012 38.4 2.1 38 139-181 2-39 (620)
410 2ce2_X GTPase HRAS; signaling 21.8 19 0.00064 31.2 -0.1 16 166-181 5-20 (166)
411 2pbr_A DTMP kinase, thymidylat 21.8 24 0.00084 32.0 0.7 15 167-181 3-17 (195)
412 2jaq_A Deoxyguanosine kinase; 21.6 25 0.00084 32.2 0.7 15 167-181 3-17 (205)
413 2whx_A Serine protease/ntpase/ 21.6 26 0.00088 39.5 1.0 24 156-181 180-203 (618)
414 2ve7_A Kinetochore protein HEC 21.5 94 0.0032 31.9 5.2 28 442-469 186-213 (315)
415 4h22_A Leucine-rich repeat fli 21.5 2.7E+02 0.0093 24.1 7.1 40 439-478 21-60 (103)
416 2zqm_A Prefoldin beta subunit 21.4 2.6E+02 0.0089 23.6 7.4 39 429-467 72-110 (117)
417 1xjc_A MOBB protein homolog; s 21.4 21 0.00073 33.4 0.2 16 166-181 6-21 (169)
418 3na7_A HP0958; flagellar bioge 21.3 2.3E+02 0.0079 27.8 7.9 26 439-464 109-134 (256)
419 2if2_A Dephospho-COA kinase; a 21.3 23 0.0008 32.8 0.5 16 166-181 3-18 (204)
420 1g41_A Heat shock protein HSLU 21.1 25 0.00084 38.2 0.7 17 165-181 51-67 (444)
421 1zuh_A Shikimate kinase; alpha 21.0 25 0.00087 31.5 0.7 15 166-180 9-23 (168)
422 1lwu_C Fibrinogen gamma chain; 21.0 2.2E+02 0.0075 29.5 7.8 32 438-469 16-47 (323)
423 2plr_A DTMP kinase, probable t 21.0 25 0.00087 32.4 0.7 17 165-181 5-21 (213)
424 3qh9_A Liprin-beta-2; coiled-c 20.8 2.4E+02 0.008 23.4 6.3 40 49-88 39-78 (81)
425 3ney_A 55 kDa erythrocyte memb 20.8 22 0.00076 34.1 0.2 16 166-181 21-36 (197)
426 3u06_A Protein claret segregat 20.8 75 0.0025 34.0 4.3 21 440-460 16-36 (412)
427 2zr9_A Protein RECA, recombina 20.7 31 0.0011 35.9 1.3 27 155-181 48-78 (349)
428 1cr0_A DNA primase/helicase; R 20.6 23 0.00078 35.2 0.2 26 156-181 25-52 (296)
429 2eqb_B RAB guanine nucleotide 20.6 4E+02 0.014 22.8 8.4 20 441-460 12-31 (97)
430 2dyk_A GTP-binding protein; GT 20.5 22 0.00075 30.9 0.1 16 166-181 3-18 (161)
431 3aez_A Pantothenate kinase; tr 20.4 23 0.00079 36.2 0.3 17 165-181 91-107 (312)
432 1zak_A Adenylate kinase; ATP:A 20.4 25 0.00086 33.2 0.5 16 166-181 7-22 (222)
433 1t3j_A Mitofusin 1; coiled coi 20.3 1.9E+02 0.0065 24.7 5.9 35 49-83 46-80 (96)
434 3qks_A DNA double-strand break 20.2 25 0.00085 33.3 0.4 16 166-181 25-40 (203)
435 2eyq_A TRCF, transcription-rep 20.2 51 0.0017 39.9 3.2 26 155-180 611-640 (1151)
No 1
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.7e-96 Score=793.24 Aligned_cols=371 Identities=33% Similarity=0.452 Sum_probs=314.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCEEEEEEeCCCCcccCCCccccEEec---C----CE
Q 006826 49 EQQKNELEQSIINLEGEIVELRLKKRRLDEKRREALNKILDIKGCIRVFCRVRSFLVTGRRVIHEPVLTE---L----EK 121 (630)
Q Consensus 49 ~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~Rr~l~n~~~elkG~IrV~~RvRP~~~~e~~~~~~~v~~~---~----~~ 121 (630)
++...+|++.+++++.++.++.+++.+++..||+|||+++|+||||||||||||+...+.......+.+. + ..
T Consensus 16 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnIrV~vRvRP~~~~~e~~~~~~~~v~~~~~~~~~~~ 95 (403)
T 4etp_A 16 KEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNIRVYLRIRPALKNLENSDTSLINVNEFDDNSGVQS 95 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEEEEECCCCTTTSCSCCTTEEECCCBTTTTBEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcccccCCCeeEEeeccCCCCceE
Confidence 5567899999999999999999999999999999999999999999999999999876332233333332 1 13
Q ss_pred EEEEeC---CceEEEEeceeeCCCCChhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceeecCCCCCCCchhHHHHHH
Q 006826 122 VVVRSG---GSKKEFGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEEL 198 (630)
Q Consensus 122 v~v~~~---~~~~~F~FD~VF~~~atQ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM~G~~~~~GIIpRal~~L 198 (630)
+.+... ...+.|.||+||+++++|++||++|.|+|+++++|||+||||||||||||||||+|+ ++|||||++++|
T Consensus 96 ~~~~~~~~~~~~~~F~FD~VF~~~~~Q~~Vf~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~g~--~~Giipr~~~~l 173 (403)
T 4etp_A 96 MEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNP--GDGIIPSTISHI 173 (403)
T ss_dssp EEEEECSSSCEEEEEEESEEECTTCCHHHHHHHHHHHHHHHHTTCCEEEEEESCTTSSHHHHHHCT--TTSHHHHHHHHH
T ss_pred EEEecCCCCcCceEEEcCEEECCCCchHHHHHHHHHHHHHHhCCcceEEEEECCCCCCCceEeCCC--CCccchhHHHHH
Confidence 444332 234899999999999999999999999999999999999999999999999999996 469999999999
Q ss_pred HHHHhc--CCCceEEEEEeEEEEecceeeecCCCCCccchhhhhcccCeeEEeCC-CCCEEEcCcEEEEcCChHHHHHHH
Q 006826 199 FRQAAL--DNSSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAATRCNLNIQTDA-KGTVEIEGLTEVQIPDFTKARWWY 275 (630)
Q Consensus 199 F~~~~~--~~~~~~~v~vS~lEIYnE~I~DLL~~~~~~~~~~~~~~~~L~i~ed~-~g~v~v~glt~v~V~s~~e~~~ll 275 (630)
|..+.. ..+|.|.|.|||+|||||+|+|||.+....... ......+.+++++ .++++|.|++++.|.++++++.+|
T Consensus 174 F~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~-~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll 252 (403)
T 4etp_A 174 FNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKED-TSIGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIIL 252 (403)
T ss_dssp HHHHHHHHTTTEEEEEEEEEEEEETTEEEETTCC---------CCSCCCCEEEETTTTEEEETTCCCEECCCHHHHHHHH
T ss_pred HHHHHhhhccCceEEEEEEEEEEecceeeEccCCccccccc-cccCcceeeEEeCCCCCEEecCcEEEEeCCHHHHHHHH
Confidence 998764 457899999999999999999999886532111 1122346777665 578999999999999999999999
Q ss_pred HhhhhcccccccCCCCCCCCcEEEEEEEEEEecCCCCCceEEeEeEEEecCCCccccccCCCcchhhhhhhhhHhHHHHH
Q 006826 276 NKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDALEAKTEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALA 355 (630)
Q Consensus 276 ~~g~~~R~~~~T~~N~~SSRSH~If~I~v~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~a~g~rl~E~~~INkSLsaLg 355 (630)
..|.++|++++|.||+.|||||+||+|+|.+.+... +....|+|+|||||||||+.++++.|++++|+.+||+||++||
T Consensus 253 ~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~-~~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg 331 (403)
T 4etp_A 253 KKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKT-GAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALG 331 (403)
T ss_dssp HHHC--C----CHHHHHHHTSEEEEEEEEEEEETTT-CCEEEEEEEEEECCCCCCCCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccccccCCcccCCcccEEEEEEEEeecCC-CCeeEEEEEEEECCCCccccccCChhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999876555 5667899999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCC---CccCCCCchhhhhhcccCCCceeeeEEecCCCCCcHHHhHHHHHHHHHhhccccccc
Q 006826 356 DVIAALRRKRG---HVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVGETICSLSFAKRARGIESNRE 423 (630)
Q Consensus 356 ~VI~aL~~~~~---hiPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~ETlsTLrFA~rar~I~~~~~ 423 (630)
+||.||+.+.. ||||||||||+||||+|||||+|+||+||||+..+++||++||+||+||++|+.++.
T Consensus 332 ~vI~aL~~~~~~~~hiPyRdSkLT~LLqdsLgGnskt~mi~~vsP~~~~~~ETl~TL~fA~rv~~~~~~~r 402 (403)
T 4etp_A 332 DVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVSR 402 (403)
T ss_dssp HHHHHHTSSCTTTSCCCGGGSHHHHHTGGGTSTTCEEEEEEEECCSGGGHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHhcccCCCCcCCcccchHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHHhhcccCCC
Confidence 99999987654 999999999999999999999999999999999999999999999999999998763
No 2
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=100.00 E-value=3.3e-95 Score=788.60 Aligned_cols=363 Identities=33% Similarity=0.512 Sum_probs=311.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCEEEEEEeCCCCcccCCCccccE-EecCCEEEEEeC
Q 006826 49 EQQKNELEQSIINLEGEIVELRLKKRRLDEKRREALNKILDIKGCIRVFCRVRSFLVTGRRVIHEPV-LTELEKVVVRSG 127 (630)
Q Consensus 49 ~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~Rr~l~n~~~elkG~IrV~~RvRP~~~~e~~~~~~~v-~~~~~~v~v~~~ 127 (630)
.+.+.++++++++++.+++++++++.+++.+||+|||+++|+||||||||||||+...|.....+.+ ..++..+.+...
T Consensus 16 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gnIrV~vRvRP~~~~E~~~~~~~~~~~~~~~v~~~~~ 95 (412)
T 3u06_A 16 RQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSI 95 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEECCCCGGGTTSCBCEEEEEETTEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEcCCCCchhccCcceEEEecCCCEEEEecC
Confidence 4556789999999999999999999999999999999999999999999999999887754433333 335566666532
Q ss_pred C-------ceEEEEeceeeCCCCChhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceeecCCCCCCCchhHHHHHHHH
Q 006826 128 G-------SKKEFGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFR 200 (630)
Q Consensus 128 ~-------~~~~F~FD~VF~~~atQ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM~G~~~~~GIIpRal~~LF~ 200 (630)
. +.+.|.||+||+++++|++||+.|.|+|+++++|||+||||||||||||||||+|.++++|||||++++||.
T Consensus 96 ~~~~~~~~~~~~F~FD~VF~~~~~Q~~Vf~~v~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~ 175 (412)
T 3u06_A 96 DAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFD 175 (412)
T ss_dssp C-------CCCEEECSEEECTTCCHHHHHTTTHHHHHHHHTTCCEEEEEESSTTSSHHHHHTEETTEECHHHHHHHHHHH
T ss_pred CcccccccCceEEeeCeEcCCCCCHHHHHHHHHHHHHHHHCCCceEEEEecCCCCCCeeEecCCCCCCccHHHHHHHHHH
Confidence 2 136899999999999999999989999999999999999999999999999999999999999999999999
Q ss_pred HHhc--CCCceEEEEEeEEEEecceeeecCCCCCccchhhhhcccCeeEEeCCCCCEEEcCcEEEEcCChHHHHHHHHhh
Q 006826 201 QAAL--DNSSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAATRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKG 278 (630)
Q Consensus 201 ~~~~--~~~~~~~v~vS~lEIYnE~I~DLL~~~~~~~~~~~~~~~~L~i~ed~~g~v~v~glt~v~V~s~~e~~~ll~~g 278 (630)
.+.. ..++.|.|+|||+|||||+|+|||++... ...+.+.+++.++++|.|++++.|.+++|++.+|..|
T Consensus 176 ~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~--------~~~i~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g 247 (412)
T 3u06_A 176 SIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQK--------DMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTA 247 (412)
T ss_dssp HHHHHGGGTEEEEEEEEEEEEETTEEEETTCCSCC--------CCCEEECSSCTTSEEETTCCCEECCSHHHHHHHHHHH
T ss_pred hhhhhcccCceEEEEEEEEEEeCCeeEEcCCCCCC--------CceeeeeecCCCCEEEcceEEEEeCCHHHHHHHHHHH
Confidence 8764 34789999999999999999999986543 1234555778899999999999999999999999999
Q ss_pred hhcccccccCCCCCCCCcEEEEEEEEEEecCCCCCceEEeEeEEEecCCCccccccCCCcchhhhhhhhhHhHHHHHHHH
Q 006826 279 RRVRSTSWTNVNEASSRSHCLMRITIFRHGDALEAKTEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVI 358 (630)
Q Consensus 279 ~~~R~~~~T~~N~~SSRSH~If~I~v~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~a~g~rl~E~~~INkSLsaLg~VI 358 (630)
.++|++++|.||+.|||||+||+|+|.+.+... .....|+|+|||||||||.. .|.+++|+.+||+||++||+||
T Consensus 248 ~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~-~~~~~~kL~lVDLAGSEr~~----~~~rl~E~~~INkSL~aLg~vI 322 (412)
T 3u06_A 248 KMNRATASTAGNERSSRSHAVTKLELIGRHAEK-QEISVGSINLVDLAGSESPK----TSTRMTETKNINRSLSELTNVI 322 (412)
T ss_dssp HHHCC-----CHHHHTTCEEEEEEEEEEEETTT-TEEEEEEEEEEECCCCCC--------------CTTTHHHHHHHHHH
T ss_pred HhcccccccCCCCCCcCceEEEEEEEEEEeCCC-CCEEEEEEEEEECCCCCcCC----ccchhHhHHHHhHHHHHHHHHH
Confidence 999999999999999999999999998876554 56678999999999999874 4689999999999999999999
Q ss_pred HHHHhCCCCccCCCCchhhhhhcccCCCceeeeEEecCCCCCcHHHhHHHHHHHHHhhcccccccc
Q 006826 359 AALRRKRGHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVGETICSLSFAKRARGIESNREL 424 (630)
Q Consensus 359 ~aL~~~~~hiPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~ETlsTLrFA~rar~I~~~~~~ 424 (630)
.||+.+..||||||||||+||||+|||||+|+||+||||+..+++||++||+||+||++|+.++..
T Consensus 323 ~aL~~~~~hiPyRdSkLT~LLqdsLgGnskt~mI~~vsP~~~~~~ETl~TLrfA~rv~~i~~~~~~ 388 (412)
T 3u06_A 323 LALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAK 388 (412)
T ss_dssp HHHHTTCSCCCGGGSHHHHHHGGGTSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHHHHCC----
T ss_pred HHHhccCCCCCccccHHHHHHHHhcCCCceEEEEEEeCCChhhHHHHHHHHHHHHHHhhccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999976654
No 3
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=100.00 E-value=2.7e-94 Score=771.42 Aligned_cols=333 Identities=40% Similarity=0.621 Sum_probs=300.0
Q ss_pred hcCCCCEEEEEEeCCCCcccCCCccccEEecCC--EEEEEe-CCceEEEEeceeeCCCCChhhHHHhhHHHHHHhhcCcc
Q 006826 88 LDIKGCIRVFCRVRSFLVTGRRVIHEPVLTELE--KVVVRS-GGSKKEFGFDKVFNQAASQEDVFVEVEPILRSALDGHN 164 (630)
Q Consensus 88 ~elkG~IrV~~RvRP~~~~e~~~~~~~v~~~~~--~v~v~~-~~~~~~F~FD~VF~~~atQ~eVf~~v~plV~svl~GyN 164 (630)
+|+||+|||+|||||+...|......+.....+ .+.+.. .+..+.|.||+||+++++|++||+++.|+|+++++|||
T Consensus 1 ee~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~v~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~lv~~~l~G~n 80 (369)
T 3cob_A 1 EDMKGKIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKDDKAKQHMYDRVFDGNATQDDVFEDTKYLVQSAVDGYN 80 (369)
T ss_dssp ---CCBCEEEEEECCCCHHHHHTTCCBCEEECSSSEEEEECTTSCEEEEECSEEECTTCCHHHHHHTTTHHHHHHHTTCE
T ss_pred CCCCCCeEEEEECCCCChhhccCCCcEEEEcCCcEEEEecCCCCCceEEecCEEECCCCCcceehhhhhhhhHhhhcCCc
Confidence 589999999999999988664322222222223 333332 33458999999999999999999999999999999999
Q ss_pred eeEEecccCCCCcceeecCCCCCCCchhHHHHHHHHHHhcCC-CceEEEEEeEEEEecceeeecCCCCCccchhhhhccc
Q 006826 165 VCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQAALDN-SSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAATRC 243 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM~G~~~~~GIIpRal~~LF~~~~~~~-~~~~~v~vS~lEIYnE~I~DLL~~~~~~~~~~~~~~~ 243 (630)
+||||||||||||||||+|+++++|||||++++||+.+.... .+.|.|++||+|||||+|+|||.+.+. ...
T Consensus 81 ~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~-------~~~ 153 (369)
T 3cob_A 81 VCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQA-------KRL 153 (369)
T ss_dssp EEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEECSSCEEESSCCSSS-------CCC
T ss_pred eEEEEECCCCCCCeEeecCCCCCCchhHHHHHHHHHHHHhhccCceeEEEEEEEEEeCceeeecCCCccc-------CCc
Confidence 999999999999999999999999999999999999887655 589999999999999999999987643 134
Q ss_pred CeeEEeCCCCCEEEcCcEEEEcCChHHHHHHHHhhhhcccccccCCCCCCCCcEEEEEEEEEEecCCCCCceEEeEeEEE
Q 006826 244 NLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDALEAKTEVSKLWMV 323 (630)
Q Consensus 244 ~L~i~ed~~g~v~v~glt~v~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~I~v~~~~~~~~~~~~~skL~lV 323 (630)
.+.|+++++++++|.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|.+.+... .....|+|+||
T Consensus 154 ~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~-~~~~~skL~lV 232 (369)
T 3cob_A 154 KLDIKKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQT-QAIARGKLSFV 232 (369)
T ss_dssp CCEEEECTTSCEEEETCCCEEECSHHHHHHHHHHHHHHTCCCSCCTTCHHHHSEEEEEEEEEEEETTT-CCEEEEEEEEE
T ss_pred ceEEEECCCCCEEccCCEEEEeCCHHHHHHHHHHHhhcceeecccCCCCCCcceEEEEEEEEEecCCC-CcEEEEEEEEE
Confidence 68999999999999999999999999999999999999999999999999999999999998876554 56778999999
Q ss_pred ecCCCccccccCCCcchhhhhhhhhHhHHHHHHHHHHHHhCCCCccCCCCchhhhhhcccCCCceeeeEEecCCCCCcHH
Q 006826 324 DLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKRGHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVG 403 (630)
Q Consensus 324 DLAGSEr~~kt~a~g~rl~E~~~INkSLsaLg~VI~aL~~~~~hiPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~ 403 (630)
|||||||+.++++.|.+++|+.+||+||++||+||.||+.+..||||||||||+||||+|||||+|+||+||||+..+++
T Consensus 233 DLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ 312 (369)
T 3cob_A 233 DLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLD 312 (369)
T ss_dssp ECCCSSCCCCCSSCSHHHHHHHHHTHHHHHHHHHHHHHHTTCSCCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHH
T ss_pred eCCCCCcccccCccchhhHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcCCHHHHHHHHhcCCCccEEEEEEeCCccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHhhcccccccccHHH
Q 006826 404 ETICSLSFAKRARGIESNRELSEDL 428 (630)
Q Consensus 404 ETlsTLrFA~rar~I~~~~~~~~~~ 428 (630)
||++||+||+||++|++.|.+|++.
T Consensus 313 ETl~TLrfA~rak~i~~~~~~n~~~ 337 (369)
T 3cob_A 313 ETHNSLTYASRVRSIVNDPSKNVSS 337 (369)
T ss_dssp HHHHHHHHHHHHHTCBCCCCCCEEC
T ss_pred HHHHHHHHHHHHhhcccCCcccCCH
Confidence 9999999999999999999999875
No 4
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=100.00 E-value=2.1e-92 Score=758.54 Aligned_cols=333 Identities=38% Similarity=0.533 Sum_probs=253.3
Q ss_pred HHHHhhhhhcCCCCEEEEEEeCCCCcccCCCccccEE---------ecCCEEEEEe-------------CCceEEEEece
Q 006826 80 RREALNKILDIKGCIRVFCRVRSFLVTGRRVIHEPVL---------TELEKVVVRS-------------GGSKKEFGFDK 137 (630)
Q Consensus 80 Rr~l~n~~~elkG~IrV~~RvRP~~~~e~~~~~~~v~---------~~~~~v~v~~-------------~~~~~~F~FD~ 137 (630)
--+|||++++++|||||||||||++..|......++. .+...+.+.. ....+.|.||+
T Consensus 10 ~~~~hn~~~~~~~~irV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~FD~ 89 (376)
T 2rep_A 10 HSSGLVPRGSLKGNIRVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPPRHDFSFDR 89 (376)
T ss_dssp -------------CEEEEEEECCCCTTSCCCCGGGSBCCC------CCCCEEECCC-----------------CEEECSE
T ss_pred cccccchhhccCCCeEEEEEcCCCChhhcccCCceEEEccCcccccCCCcEEEEecCCccccccccccCCCCceeeeecE
Confidence 3579999999999999999999999877543221111 1233344321 11236899999
Q ss_pred eeCCCCChhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceeecCCCC----CCCchhHHHHHHHHHHhc--CCCceEE
Q 006826 138 VFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMDGTSD----QPGIVPRALEELFRQAAL--DNSSSVT 211 (630)
Q Consensus 138 VF~~~atQ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM~G~~~----~~GIIpRal~~LF~~~~~--~~~~~~~ 211 (630)
||+++++|++||++|.|+|+++|+|||+||||||||||||||||+|+.. ++|||||++++||+.+.. ..++.|.
T Consensus 90 Vf~~~~~Q~~Vy~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~ 169 (376)
T 2rep_A 90 VFPPGSGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQLEGLIPRALRHLFSVAQELSGQGWTYS 169 (376)
T ss_dssp EECTTCCHHHHHHHHHHHHHGGGGTCCEEEEEECSTTSSHHHHHTBCSSCCGGGBCHHHHHHHHHHHHHHHGGGGTEEEE
T ss_pred EcCCcccchhhhhhHHHHHHHhcCCCceEEEEeCCCCCCCceEeecCCCCCcccCCcHHHHHHHHHHHHHHhhcCCeEEE
Confidence 9999999999999999999999999999999999999999999999753 689999999999998764 3478999
Q ss_pred EEEeEEEEecceeeecCCCCCccchhhhhcccCeeEEeC--CCCCEEEcCcEEEEcCChHHHHHHHHhhhhcccccccCC
Q 006826 212 FSMSMLEVYMGSVRDLLAPKPVFKAYEAATRCNLNIQTD--AKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNV 289 (630)
Q Consensus 212 v~vS~lEIYnE~I~DLL~~~~~~~~~~~~~~~~L~i~ed--~~g~v~v~glt~v~V~s~~e~~~ll~~g~~~R~~~~T~~ 289 (630)
|+|||+|||||+|+|||++.... .....+.|+++ +.++++|.|++++.|.+++|++.+|..|.++|++++|.|
T Consensus 170 v~vS~~EIYnE~i~DLL~~~~~~-----~~~~~l~ir~~~~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~ 244 (376)
T 2rep_A 170 FVASYVEIYNETVRDLLATGTRK-----GQGGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQ 244 (376)
T ss_dssp EEEEEEEEETTEEEETTCCC-------------CCEEEC---CCCEEETTCCCEEECSHHHHHHHHHHHHHHHHHCC---
T ss_pred EEEEEEEEECCEeeEcccccccc-----ccCCCceEEeccCCCCCEEECCcEEEEeCCHHHHHHHHHHHHhhcccccccC
Confidence 99999999999999999875321 12235788888 678999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEEEEEEEecCCCCCceEEeEeEEEecCCCccccccCCCc----chhhhhhhhhHhHHHHHHHHHHHHhCC
Q 006826 290 NEASSRSHCLMRITIFRHGDALEAKTEVSKLWMVDLGGSERVLKTGATG----QTLDEGRAINLSLSALADVIAALRRKR 365 (630)
Q Consensus 290 N~~SSRSH~If~I~v~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~a~g----~rl~E~~~INkSLsaLg~VI~aL~~~~ 365 (630)
|+.|||||+||+|+|.+.+... +....|+|+|||||||||+.++++.| ++++|+.+||+||++||+||.||+++.
T Consensus 245 N~~SSRSH~Ifti~v~~~~~~~-~~~~~skL~lVDLAGSEr~~~t~~~g~~~~~rlkE~~~INkSL~aLg~vI~aL~~~~ 323 (376)
T 2rep_A 245 NERSSRSHSVFQLQISGEHSSR-GLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMALSNKE 323 (376)
T ss_dssp --CGGGSEEEEEEEEEEEESSS-CCEEEEEEEEEECCCCC------------------------CHHHHHHHHHHHHTTC
T ss_pred CCCCCCceEEEEEEEEEEecCC-CcEEEeEEEEEECCCCcccccccccCccccchhhHHhHhhHHHHHHHHHHHHHhcCC
Confidence 9999999999999999876554 55678999999999999999999999 999999999999999999999999999
Q ss_pred CCccCCCCchhhhhhcccCCCceeeeEEecCCCCCcHHHhHHHHHHHHHhhcc
Q 006826 366 GHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVGETICSLSFAKRARGI 418 (630)
Q Consensus 366 ~hiPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~ETlsTLrFA~rar~I 418 (630)
.||||||||||+||||+|||||+|+||+||||+..+++||++||+||+||++|
T Consensus 324 ~hVPYRdSkLT~LLqdsLgGnskT~mIa~isP~~~~~~ETlsTLrfA~Rv~~~ 376 (376)
T 2rep_A 324 SHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKVNQC 376 (376)
T ss_dssp SCCCGGGSHHHHHTGGGTSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHC--
T ss_pred CccCCcCCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999875
No 5
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=100.00 E-value=1.7e-91 Score=740.82 Aligned_cols=323 Identities=44% Similarity=0.649 Sum_probs=282.7
Q ss_pred cCCCCEEEEEEeCCCCcccCCC--ccccEEec---CCEEEEEeCCceEEEEeceeeCCCCChhhHHHhhHHHHHHhhcCc
Q 006826 89 DIKGCIRVFCRVRSFLVTGRRV--IHEPVLTE---LEKVVVRSGGSKKEFGFDKVFNQAASQEDVFVEVEPILRSALDGH 163 (630)
Q Consensus 89 elkG~IrV~~RvRP~~~~e~~~--~~~~v~~~---~~~v~v~~~~~~~~F~FD~VF~~~atQ~eVf~~v~plV~svl~Gy 163 (630)
++||||||+|||||+...|... ...++.++ ...+.+...+..+.|.||+||+++++|++||++|.|+|+++++||
T Consensus 1 ~~~~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~v~~lv~~~l~G~ 80 (330)
T 2h58_A 1 GSKGNIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHKGKPVSFELDKVFSPQASQQDVFQEVQALVTSCIDGF 80 (330)
T ss_dssp ----CEEEEEEECCCCGGGCSSGGGSBCEEECSSCTTEEEEEETTEEEEEECSEEECTTCCHHHHHTTTHHHHHHHHTTC
T ss_pred CCCCCEEEEEEcCCCChhhcccCCCccEEEEeCCCCcEEEEcCCCCeeEEecCeEeCCCCCcHhHHHHHHHHHHHHhCCC
Confidence 5899999999999999876543 23455554 234556666777899999999999999999999999999999999
Q ss_pred ceeEEecccCCCCcceeecCCCCCCCchhHHHHHHHHHHhcC-CCceEEEEEeEEEEecceeeecCCCCCccchhhhhcc
Q 006826 164 NVCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQAALD-NSSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAATR 242 (630)
Q Consensus 164 N~~IfaYGqTGSGKTyTM~G~~~~~GIIpRal~~LF~~~~~~-~~~~~~v~vS~lEIYnE~I~DLL~~~~~~~~~~~~~~ 242 (630)
|+||||||||||||||||+|+++++|||||++++||..+... ..+.|.|+|||+|||||+|+|||++.+. .+
T Consensus 81 n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~-------~~ 153 (330)
T 2h58_A 81 NVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQ-------EK 153 (330)
T ss_dssp CEEEEEESSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSCSSC-------CC
T ss_pred EEEEEeECCCCCCCcEEEecCCCCCcHHHHHHHHHHHhhhcccCCceEEEEEEEEEEECCChhhccccccc-------cc
Confidence 999999999999999999999999999999999999988654 4789999999999999999999987643 11
Q ss_pred cCeeEEeCCCCCEEEcCcEEEEcCChHHHHHHHHhhhhcccccccCCCCCCCCcEEEEEEEEEEecCCCCCceEEeEeEE
Q 006826 243 CNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDALEAKTEVSKLWM 322 (630)
Q Consensus 243 ~~L~i~ed~~g~v~v~glt~v~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~I~v~~~~~~~~~~~~~skL~l 322 (630)
..+.+.+++.++++|.|++++.|.+++|++.+|..|.++|++++|.||+.|||||+||+|+|.+.+... +....|+|+|
T Consensus 154 l~i~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~-~~~~~skL~l 232 (330)
T 2h58_A 154 LEIRLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCST-GLRTTGKLNL 232 (330)
T ss_dssp CCCEECTTSSCCEECTTCCCEEECSHHHHHHHHHHHHHHTTCTTCCSCSCGGGSEEEEEEEEEEEETTT-TEEEEEEEEE
T ss_pred ceEEEeecCCCCEecCCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCcCCccEEEEEEEEEEecCC-CcEEEEEEEE
Confidence 234555688999999999999999999999999999999999999999999999999999998876544 6677899999
Q ss_pred EecCCCccccccCCCcchhhhhhhhhHhHHHHHHHHHHHHhCCCCccCCCCchhhhhhcccCCCceeeeEEecCCCCCcH
Q 006826 323 VDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKRGHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDV 402 (630)
Q Consensus 323 VDLAGSEr~~kt~a~g~rl~E~~~INkSLsaLg~VI~aL~~~~~hiPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~ 402 (630)
||||||||+.++++.|.+++|+.+||+||++||+||.||+++..||||||||||+||||+|||||+|+||+||||+..++
T Consensus 233 VDLAGSEr~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lL~dsLgGns~t~mI~~isP~~~~~ 312 (330)
T 2h58_A 233 VDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNT 312 (330)
T ss_dssp EECCCCCCCC------HHHHHHHHHHHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTHHHHSTTCEEEEEEEECCBGGGH
T ss_pred EeCCCCCcccccCCchhhhHHHHHhhHhHHHHHHHHHHHhcCCCCCcccccHHHHHHHHHhCCCceEEEEEEeCCccccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHhhccc
Q 006826 403 GETICSLSFAKRARGIE 419 (630)
Q Consensus 403 ~ETlsTLrFA~rar~I~ 419 (630)
+||++||+||+||++|+
T Consensus 313 ~ETl~TL~fA~rak~i~ 329 (330)
T 2h58_A 313 SETLYSLKFAERVRSVE 329 (330)
T ss_dssp HHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHhhCc
Confidence 99999999999999986
No 6
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.6e-92 Score=760.72 Aligned_cols=336 Identities=32% Similarity=0.508 Sum_probs=259.3
Q ss_pred hhhcCCCCEEEEEEeCCCCcccCCC-ccccEE-ecCCEEEEEeC---CceEEEEeceeeCCCCChhhHHHhh-HHHHHHh
Q 006826 86 KILDIKGCIRVFCRVRSFLVTGRRV-IHEPVL-TELEKVVVRSG---GSKKEFGFDKVFNQAASQEDVFVEV-EPILRSA 159 (630)
Q Consensus 86 ~~~elkG~IrV~~RvRP~~~~e~~~-~~~~v~-~~~~~v~v~~~---~~~~~F~FD~VF~~~atQ~eVf~~v-~plV~sv 159 (630)
...+.+|+|||+|||||+...|... ...++. .++..+.+... ...+.|.||+||+++++|++||+.+ .|+|+++
T Consensus 15 ~~~~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~f~FD~Vf~~~~tQ~~Vy~~~~~plv~~~ 94 (388)
T 3bfn_A 15 YFQGPPARVRVAVRLRPFVDGTAGASDPPCVRGMDSCSLEIANWRNHQETLKYQFDAFYGERSTQQDIYAGSVQPILRHL 94 (388)
T ss_dssp CSSSCCCCCEEEEEECCCC-----------------------------CEEEEECSEEECTTCCHHHHHHHHTGGGHHHH
T ss_pred cccCCCCCEEEEEECCCCChhhhccCCCceEEecCCCeEEEecCCCCCCeeEEEcceEecCCCCHhHHHHHHHHHHHHHh
Confidence 3567899999999999999876432 233333 34555555432 2347899999999999999999875 9999999
Q ss_pred hcCcceeEEecccCCCCcceeecCCCCCCCchhHHHHHHHHHHhc----CCCceEEEEEeEEEEecceeeecCCCCCccc
Q 006826 160 LDGHNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQAAL----DNSSSVTFSMSMLEVYMGSVRDLLAPKPVFK 235 (630)
Q Consensus 160 l~GyN~~IfaYGqTGSGKTyTM~G~~~~~GIIpRal~~LF~~~~~----~~~~~~~v~vS~lEIYnE~I~DLL~~~~~~~ 235 (630)
++|||+||||||||||||||||+|+++++|||||++++||+.+.. ...+.|.|+|||+|||||+|+|||++...
T Consensus 95 l~G~N~tifAYGqTGSGKTyTM~G~~~~~Giipra~~~lF~~i~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~-- 172 (388)
T 3bfn_A 95 LEGQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPASG-- 172 (388)
T ss_dssp TTTCCEEEEEESCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHTSTTCSEEEEEEEEEEEEETTEEEESSSCSSC--
T ss_pred hcCceeeEeeecCCCCCCCeEeecCccccchhHHHHHHHHHHHHHhhccCCCceEEEEEEEEEEECCeeeehhccCCC--
Confidence 999999999999999999999999999999999999999998754 34689999999999999999999987643
Q ss_pred hhhhhcccCeeEEeCCCCCEEEcCcEEEEcCChHHHHHHHHhhhhcccccccCCCCCCCCcEEEEEEEEEEecCCCCCce
Q 006826 236 AYEAATRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDALEAKT 315 (630)
Q Consensus 236 ~~~~~~~~~L~i~ed~~g~v~v~glt~v~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~I~v~~~~~~~~~~~ 315 (630)
.+.|++|+.++++|.|++++.|.+++|++.+|..|.++|++++|.||+.|||||+||+|+|.+.........
T Consensus 173 --------~l~ired~~~~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~ 244 (388)
T 3bfn_A 173 --------DLVIREDCRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAPFRQ 244 (388)
T ss_dssp --------BCCCEECTTSCEECTTCCCEECCSHHHHHHHHHHHTC-----------CGGGSEEEEEEEEEEEESSTTCCE
T ss_pred --------CceEEEcCCCCEEeccceEEEeCCHHHHHHHHHHHhhccccccccCCCCCCCCeEEEEEEEEEeccCCCCce
Confidence 589999999999999999999999999999999999999999999999999999999999988765544556
Q ss_pred EEeEeEEEecCCCccccccCCCcchhhhhhhhhHhHHHHHHHHHHHHhCCCCccCCCCchhhhhhcccCCCceeeeEEec
Q 006826 316 EVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKRGHVPYRNSKLTQILRDSLGDGSKVLMLVHA 395 (630)
Q Consensus 316 ~~skL~lVDLAGSEr~~kt~a~g~rl~E~~~INkSLsaLg~VI~aL~~~~~hiPYRdSKLT~LLqdsLgGnskT~mI~~V 395 (630)
..|+|+|||||||||+.++++.|.+++|+.+||+||++||+||.||.++..||||||||||+||||+|||||+|+||+||
T Consensus 245 ~~skL~lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdSkLTrlLqdsLgGnskT~mIa~i 324 (388)
T 3bfn_A 245 REGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLPRVPYRDSKLTRLLQDSLGGSAHSILIANI 324 (388)
T ss_dssp EEEEEEEEECCCTTC--------------CCCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTTTSSSTTCEEEEEEEE
T ss_pred eEEEEEEEECCCCcccccccCccchhHHHhHhhhhHHHHHHHHHHHhcCCCCCcCcccHHHHHHHHhhCCCccEEEEEEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcHHHhHHHHHHHHHhhcccccccccHHHHHH
Q 006826 396 SPCEEDVGETICSLSFAKRARGIESNRELSEDLKKR 431 (630)
Q Consensus 396 SP~~~~~~ETlsTLrFA~rar~I~~~~~~~~~~~~~ 431 (630)
||+..+++||++||+||+||++|+|.|.+|+++...
T Consensus 325 SP~~~~~~ETlsTLrfA~rak~I~n~p~~n~~~~~~ 360 (388)
T 3bfn_A 325 APERRFYLDTVSALNFAARSKEVINRPFTNESLQPH 360 (388)
T ss_dssp CCSGGGHHHHHHHHHHHCSEEEEC------------
T ss_pred CCccccHHHHHHHHHHHHHHhhCcCcCcccCCCCHH
Confidence 999999999999999999999999999999887653
No 7
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=100.00 E-value=2.2e-91 Score=744.66 Aligned_cols=328 Identities=35% Similarity=0.547 Sum_probs=270.8
Q ss_pred CCCEEEEEEeCCCCcccCC-CccccEEec--CCEEEEEeC----------CceEEEEeceeeCCCCChhhHHHhh-HHHH
Q 006826 91 KGCIRVFCRVRSFLVTGRR-VIHEPVLTE--LEKVVVRSG----------GSKKEFGFDKVFNQAASQEDVFVEV-EPIL 156 (630)
Q Consensus 91 kG~IrV~~RvRP~~~~e~~-~~~~~v~~~--~~~v~v~~~----------~~~~~F~FD~VF~~~atQ~eVf~~v-~plV 156 (630)
.++|||+|||||+...|.. +...++.++ ...+.+... ...+.|.||+||+++++|++||+++ .|+|
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv 82 (350)
T 2vvg_A 3 SDNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVYDQTSCNYGIFQASFKPLI 82 (350)
T ss_dssp -CBCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEECC--------------EEEECSEEECTTCCHHHHHHHTTHHHH
T ss_pred CCCeEEEEEeCCCChhhhccCCceEEEEcCCCCEEEEeeccccccccccCCCceEeeCCEEECCCcchhHHHHHHHHHHH
Confidence 5899999999999986643 344556554 345655432 2348999999999999999999986 9999
Q ss_pred HHhhcCcceeEEecccCCCCcceeecCCCCCCCchhHHHHHHHHHHhc-CCCceEEEEEeEEEEecceeeecCCCCCccc
Q 006826 157 RSALDGHNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQAAL-DNSSSVTFSMSMLEVYMGSVRDLLAPKPVFK 235 (630)
Q Consensus 157 ~svl~GyN~~IfaYGqTGSGKTyTM~G~~~~~GIIpRal~~LF~~~~~-~~~~~~~v~vS~lEIYnE~I~DLL~~~~~~~ 235 (630)
+++++|||+||||||||||||||||+|+.+++|||||++++||+.+.. ...+.|.|.+||+|||||+|+|||++.
T Consensus 83 ~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~---- 158 (350)
T 2vvg_A 83 DAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIKNN---- 158 (350)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTCCTTEEEEEEEEEEEEETTEEEETTTTE----
T ss_pred HHHhCCCceeEEeecCCCCCCCEEeecCCccCchHHHHHHHHHHHHHhhccCCcEEEEEEEEEEeCCEEEEcccCC----
Confidence 999999999999999999999999999999999999999999999874 458899999999999999999999842
Q ss_pred hhhhhcccCeeEEeCCCCCEEEcCcEEEEcCChHHHHHHHHhhhhcccccccCCCCCCCCcEEEEEEEEEEecCCCC-Cc
Q 006826 236 AYEAATRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDALE-AK 314 (630)
Q Consensus 236 ~~~~~~~~~L~i~ed~~g~v~v~glt~v~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~I~v~~~~~~~~-~~ 314 (630)
..+.|++++.++++|.|++++.|.+++|++.+|..|.++|++++|.||+.|||||+||+|+|........ ..
T Consensus 159 -------~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~ 231 (350)
T 2vvg_A 159 -------TKLPLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENKEV 231 (350)
T ss_dssp -------EEECEEEETTTEEEETTCCCEEESSHHHHHHHHHHHHHHC----------CTTCEEEEEEEEEEEEC----CE
T ss_pred -------cCceeeEcCCCCEEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcceEEEEEEEEEeeccCCCcc
Confidence 2589999999999999999999999999999999999999999999999999999999999987654321 34
Q ss_pred eEEeEeEEEecCCCccccccCCCcchhhhhhhhhHhHHHHHHHHHHHHhCCCCccCCCCchhhhhhcccCCCceeeeEEe
Q 006826 315 TEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKRGHVPYRNSKLTQILRDSLGDGSKVLMLVH 394 (630)
Q Consensus 315 ~~~skL~lVDLAGSEr~~kt~a~g~rl~E~~~INkSLsaLg~VI~aL~~~~~hiPYRdSKLT~LLqdsLgGnskT~mI~~ 394 (630)
...|+|+|||||||||+.++++.|++++|+.+||+||++||+||.||.++..||||||||||+||||+|||||+|+||+|
T Consensus 232 ~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~ 311 (350)
T 2vvg_A 232 IRVGKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGATHIPYRDSKLTRLLQDSLGGNSKTLMCAN 311 (350)
T ss_dssp EEEEEEEEEECCCCCC---------------CTTHHHHHHHHHHHHHHHTCSSCCGGGCHHHHHTTTTTTSSSEEEEEEE
T ss_pred EEEEEEEEEeCCCCCccccccccHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCCCccccHHHHHHHHhcCCCccEEEEEE
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcHHHhHHHHHHHHHhhcccccccccHHHH
Q 006826 395 ASPCEEDVGETICSLSFAKRARGIESNRELSEDLK 429 (630)
Q Consensus 395 VSP~~~~~~ETlsTLrFA~rar~I~~~~~~~~~~~ 429 (630)
|||+..+++||++||+||+||++|++.|.+|+++.
T Consensus 312 isP~~~~~~ETl~TL~fA~rak~i~n~~~~n~~~~ 346 (350)
T 2vvg_A 312 ISPASTNYDETMSTLRYADRAKQIKNKPRINEDPK 346 (350)
T ss_dssp ECCBGGGHHHHHHHHHHHHHHTTCBCCCCCCBSCT
T ss_pred eCCccccHHHHHHHHHHHHHHhhccccceecCCch
Confidence 99999999999999999999999999999998753
No 8
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=100.00 E-value=4.9e-91 Score=742.06 Aligned_cols=328 Identities=34% Similarity=0.519 Sum_probs=286.9
Q ss_pred CCCEEEEEEeCCCCcccCCC-ccccE--EecCCEEEEEeCCceEEEEeceeeCCCCChhhHHHhh-HHHHHHhhcCccee
Q 006826 91 KGCIRVFCRVRSFLVTGRRV-IHEPV--LTELEKVVVRSGGSKKEFGFDKVFNQAASQEDVFVEV-EPILRSALDGHNVC 166 (630)
Q Consensus 91 kG~IrV~~RvRP~~~~e~~~-~~~~v--~~~~~~v~v~~~~~~~~F~FD~VF~~~atQ~eVf~~v-~plV~svl~GyN~~ 166 (630)
.|+|+|+|||||+...|... ...++ ..+...+. ...+.+.|.||+||+++++|++||+.+ .|+|+++++|||+|
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~--~~~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~G~n~t 80 (349)
T 1t5c_A 3 EGAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIY--QVDGSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGT 80 (349)
T ss_dssp CCCEEEEEEECCCSCSSCTTTTCCCCCEEEETTEEE--ETTSSCEEECSCEECTTSCHHHHHHHTTHHHHHHHHTTCCEE
T ss_pred CCCEEEEEECCCCChhhhccCCCcEEEEeCCCCeEE--ECCCCeEEECCEEECCCCCHHHHHHHHHHHHHHHHHcCCccc
Confidence 59999999999999876532 22222 22333332 233457999999999999999999987 99999999999999
Q ss_pred EEecccCCCCcceeecCCCCCCCchhHHHHHHHHHHhcCCCceEEEEEeEEEEecceeeecCCCCCccchhhhhcccCee
Q 006826 167 VLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQAALDNSSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAATRCNLN 246 (630)
Q Consensus 167 IfaYGqTGSGKTyTM~G~~~~~GIIpRal~~LF~~~~~~~~~~~~v~vS~lEIYnE~I~DLL~~~~~~~~~~~~~~~~L~ 246 (630)
|||||||||||||||+|+++++|||||++++||+.+....+..|.|+|||+|||||+|+|||++... ...|.
T Consensus 81 ifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~--------~~~l~ 152 (349)
T 1t5c_A 81 IFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKFPDREFLLRVSYMEIYNETITDLLCGTQK--------MKPLI 152 (349)
T ss_dssp EEEEESTTSSHHHHHTBCSSSBCHHHHHHHHHHHHGGGCTTEEEEEEEEEEEEETTEEEESSSSSCT--------TCCEE
T ss_pred eeeecCCCCCCCeEEecCCCCCchHHHHHHHHHHHHHhCcCCcEEEEEEEEEEeCCEEEEccCCCCC--------CCCce
Confidence 9999999999999999999999999999999999998888899999999999999999999987543 23689
Q ss_pred EEeCCCCCEEEcCcEEEEcCChHHHHHHHHhhhhcccccccCCCCCCCCcEEEEEEEEEEecCCC----CCceEEeEeEE
Q 006826 247 IQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDAL----EAKTEVSKLWM 322 (630)
Q Consensus 247 i~ed~~g~v~v~glt~v~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~I~v~~~~~~~----~~~~~~skL~l 322 (630)
|++|++++++|.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+|.|.+..... .+....|+|+|
T Consensus 153 i~ed~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~~skL~l 232 (349)
T 1t5c_A 153 IREDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNL 232 (349)
T ss_dssp EEETTTTEEEETTCCCEECSSHHHHHHHHHHHHHTTSSSSSSSSCTTTTCEEEEEEEEEEEECC-------CEEEEEEEE
T ss_pred EEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhcccccccccCCCCCCCceEEEEEEEEEeccCCCcCcCccEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999998765432 13457799999
Q ss_pred EecCCCccccccCCCcchhhhhhhhhHhHHHHHHHHHHHHhCC--CCccCCCCchhhhhhcccCCCceeeeEEecCCCCC
Q 006826 323 VDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKR--GHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEE 400 (630)
Q Consensus 323 VDLAGSEr~~kt~a~g~rl~E~~~INkSLsaLg~VI~aL~~~~--~hiPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~ 400 (630)
||||||||+.++++.|.+++|+.+||+||++||+||.||+.++ .||||||||||+||||+|||||+|+||+||||+
T Consensus 233 VDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~-- 310 (349)
T 1t5c_A 233 VDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKTRIICTITPV-- 310 (349)
T ss_dssp EECCCGGGTC-------CCCSSSCCCHHHHHHHHHHHHHHHTCCTTSSCGGGSHHHHHTGGGTTSSSEEEEEEEECTT--
T ss_pred EECCCCccccccCCccccchhhhHHhHHHHHHHHHHHHHhccCCCCCCcccccHHHHHHHHhcCCCceEEEEEEeCCC--
Confidence 9999999999999999999999999999999999999999875 699999999999999999999999999999997
Q ss_pred cHHHhHHHHHHHHHhhcccccccccHHHHH
Q 006826 401 DVGETICSLSFAKRARGIESNRELSEDLKK 430 (630)
Q Consensus 401 ~~~ETlsTLrFA~rar~I~~~~~~~~~~~~ 430 (630)
+++||++||+||+||++|++.|.+|+++..
T Consensus 311 ~~~ETlsTL~fA~rak~I~n~~~vn~~~~~ 340 (349)
T 1t5c_A 311 SFDETLTALQFASTAKYMKNTPYVNEVSTD 340 (349)
T ss_dssp CSHHHHHHHHHHHHHTTCCCCCCCCEEC--
T ss_pred CHHHHHHHHHHHHHHhhcccCceeccCCCC
Confidence 589999999999999999999999987554
No 9
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=100.00 E-value=1.3e-91 Score=750.14 Aligned_cols=326 Identities=36% Similarity=0.534 Sum_probs=279.8
Q ss_pred cCCCCEEEEEEeCCCCcccCC-CccccEEecC----CEEEEEeCCceEEEEeceeeCCCCChhhHHHhh-HHHHHHhhcC
Q 006826 89 DIKGCIRVFCRVRSFLVTGRR-VIHEPVLTEL----EKVVVRSGGSKKEFGFDKVFNQAASQEDVFVEV-EPILRSALDG 162 (630)
Q Consensus 89 elkG~IrV~~RvRP~~~~e~~-~~~~~v~~~~----~~v~v~~~~~~~~F~FD~VF~~~atQ~eVf~~v-~plV~svl~G 162 (630)
..+|+|||+|||||+...|.. +...++.+.+ ..+.+ . .+.|.||+||+++++|++||+++ .|+|+++++|
T Consensus 8 ~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~i~~--~--~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G 83 (365)
T 2y65_A 8 PAEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISI--A--GKVYLFDKVFKPNASQEKVYNEAAKSIVTDVLAG 83 (365)
T ss_dssp CCEEECEEEEEECCCCHHHHHTTCCBCEECCSSSTTCEEEE--T--TEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTT
T ss_pred CCCCCeEEEEEcCcCChhHhccCCceEEEeCCCCCCcEEEE--C--CEEEeCceEecCCCCHHHHHHHhhhhHHHHHhCC
Confidence 467999999999999986643 3344555543 23332 2 37899999999999999999987 9999999999
Q ss_pred cceeEEecccCCCCcceeecCCC---CCCCchhHHHHHHHHHHhc-CCCceEEEEEeEEEEecceeeecCCCCCccchhh
Q 006826 163 HNVCVLAYGQTGTGKTFTMDGTS---DQPGIVPRALEELFRQAAL-DNSSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYE 238 (630)
Q Consensus 163 yN~~IfaYGqTGSGKTyTM~G~~---~~~GIIpRal~~LF~~~~~-~~~~~~~v~vS~lEIYnE~I~DLL~~~~~~~~~~ 238 (630)
||+||||||||||||||||+|+. .++|||||++++||+.+.. ...+.|.|+|||+|||||+|+|||++...
T Consensus 84 ~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~----- 158 (365)
T 2y65_A 84 YNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVSKV----- 158 (365)
T ss_dssp CCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHCCSCEEEEEEEEEEEEETTEEEETTCTTCC-----
T ss_pred CceEEEeecCCCCCCceEEecCCCCcccCChHHHHHHHHHHHHHhccCCceEEEEEEEEEEECCeeeecccCCcC-----
Confidence 99999999999999999999964 4569999999999998765 44789999999999999999999986543
Q ss_pred hhcccCeeEEeCCCCCEEEcCcEEEEcCChHHHHHHHHhhhhcccccccCCCCCCCCcEEEEEEEEEEecCCCCCceEEe
Q 006826 239 AATRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDALEAKTEVS 318 (630)
Q Consensus 239 ~~~~~~L~i~ed~~g~v~v~glt~v~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~I~v~~~~~~~~~~~~~s 318 (630)
.+.+++++.++++|.|++++.|.+++|++.+|..|.++|++++|.||+.|||||+||+|+|.+.+... .....|
T Consensus 159 -----~l~i~e~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~-~~~~~s 232 (365)
T 2y65_A 159 -----NLSVHEDKNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLEN-QKKLSG 232 (365)
T ss_dssp -----SBCEEECSSSCEEETTCCCEEECSHHHHHHHHHHHHHHHTTTCSCHHHHHHTSEEEEEEEEEEEETTT-CCEEEE
T ss_pred -----CceEEECCCCCEEecCCEEEecCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEEEecCC-CCEeEE
Confidence 68999999999999999999999999999999999999999999999999999999999998876544 566789
Q ss_pred EeEEEecCCCccccccCCCcchhhhhhhhhHhHHHHHHHHHHHHhC-CCCccCCCCchhhhhhcccCCCceeeeEEecCC
Q 006826 319 KLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRK-RGHVPYRNSKLTQILRDSLGDGSKVLMLVHASP 397 (630)
Q Consensus 319 kL~lVDLAGSEr~~kt~a~g~rl~E~~~INkSLsaLg~VI~aL~~~-~~hiPYRdSKLT~LLqdsLgGnskT~mI~~VSP 397 (630)
+|+|||||||||+.++++.|.+++|+.+||+||++||+||.||+++ ..||||||||||+||||+|||||+|+||+||||
T Consensus 233 kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP 312 (365)
T 2y65_A 233 KLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIVICCSP 312 (365)
T ss_dssp EEEEEECCCCCC----------------CCHHHHHHHHHHHHHHHCCCSCCCGGGCHHHHHTGGGTTSSSEEEEEEEECC
T ss_pred EEEEEECCCCCcchhcCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccCHHHHHHHhhcCCCccEEEEEEecC
Confidence 9999999999999999999999999999999999999999999987 579999999999999999999999999999999
Q ss_pred CCCcHHHhHHHHHHHHHhhcccccccccHHHH
Q 006826 398 CEEDVGETICSLSFAKRARGIESNRELSEDLK 429 (630)
Q Consensus 398 ~~~~~~ETlsTLrFA~rar~I~~~~~~~~~~~ 429 (630)
+..+++||++||+||+||++|++.+.+|+++.
T Consensus 313 ~~~~~~ETl~TL~fA~rak~I~n~~~~n~~~~ 344 (365)
T 2y65_A 313 ASFNESETKSTLDFGRRAKTVKNVVCVNEELT 344 (365)
T ss_dssp BGGGHHHHHHHHHHHHHHTTCEEECCCEEECC
T ss_pred ccCCHHHHHHHHHHHHHHhcccCcceeCCCCC
Confidence 99999999999999999999999999998754
No 10
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=100.00 E-value=3.8e-91 Score=747.43 Aligned_cols=337 Identities=36% Similarity=0.551 Sum_probs=285.7
Q ss_pred hhhhcCCCCEEEEEEeCCCCcccCC-CccccEEec--CCEEEEEeC-----CceEEEEeceeeCCCCChhhHHHhh-HHH
Q 006826 85 NKILDIKGCIRVFCRVRSFLVTGRR-VIHEPVLTE--LEKVVVRSG-----GSKKEFGFDKVFNQAASQEDVFVEV-EPI 155 (630)
Q Consensus 85 n~~~elkG~IrV~~RvRP~~~~e~~-~~~~~v~~~--~~~v~v~~~-----~~~~~F~FD~VF~~~atQ~eVf~~v-~pl 155 (630)
...++.+++|||+|||||+...|.. +...++.++ ...+.+... ...+.|.||+||+++++|++||+++ .|+
T Consensus 14 ~~~~~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~pl 93 (372)
T 3b6u_A 14 LYFQGSSESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAVYDWNAKQFELYDETFRPL 93 (372)
T ss_dssp -------CBCEEEEEECCCCHHHHHTTCCBCEEEETTTTEEEECCTTCTTTCCCEEEECSEEECTTCCHHHHHHHTHHHH
T ss_pred CccCCCCCCeEEEEEcCCCChhhhccCCceEEEEeCCCCEEEEECCCCCCCCCceEEEcCeEeCCcCchHHHHHHHHHHH
Confidence 3467889999999999999986643 344556654 356777643 2348999999999999999999986 999
Q ss_pred HHHhhcCcceeEEecccCCCCcceeecCCC---CCCCchhHHHHHHHHHHhcCCCceEEEEEeEEEEecceeeecCCCCC
Q 006826 156 LRSALDGHNVCVLAYGQTGTGKTFTMDGTS---DQPGIVPRALEELFRQAALDNSSSVTFSMSMLEVYMGSVRDLLAPKP 232 (630)
Q Consensus 156 V~svl~GyN~~IfaYGqTGSGKTyTM~G~~---~~~GIIpRal~~LF~~~~~~~~~~~~v~vS~lEIYnE~I~DLL~~~~ 232 (630)
|+++++|||+||||||||||||||||+|.. +++|||||++++||..+.....+.|.|+|||+|||||+|+|||++..
T Consensus 94 v~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~ 173 (372)
T 3b6u_A 94 VDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKDQ 173 (372)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHHTBCTTSGGGBCHHHHHHHHHHHHHHTCSSCEEEEEEEEEEEETTEEEETTSSCT
T ss_pred HHHHhCCCeeeEEeecCCCCCCCEeEecCCCCcccCCcHHHHHHHHHHHhhhccCCceEEEEEEEEEeCCEEEECCCCCC
Confidence 999999999999999999999999999965 45699999999999999888889999999999999999999998754
Q ss_pred ccchhhhhcccCeeEEeCCCCCEEEcCcEEEEcCChHHHHHHHHhhhhcccccccCCCCCCCCcEEEEEEEEEEecCCC-
Q 006826 233 VFKAYEAATRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDAL- 311 (630)
Q Consensus 233 ~~~~~~~~~~~~L~i~ed~~g~v~v~glt~v~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~I~v~~~~~~~- 311 (630)
. ..+.|+++++++++|.|++++.|.+++|++.+|..|.++|++++|.||+.|||||+||+|+|.......
T Consensus 174 ~---------~~l~i~e~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~ 244 (372)
T 3b6u_A 174 T---------KRLELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLD 244 (372)
T ss_dssp T---------CCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTTTCSSHHHHHHTSEEEEEEEEEEEC----
T ss_pred C---------CCceEEECCCCcEecCCCEEEEecCHHHHHHHHHHHHHhcCcccccCCCCCCcceEEEEEEEEEeecCCC
Confidence 3 358999999999999999999999999999999999999999999999999999999999998765322
Q ss_pred -CCceEEeEeEEEecCCCccccccCCCcchhhhhhhhhHhHHHHHHHHHHHHhCC-CCccCCCCchhhhhhcccCCCcee
Q 006826 312 -EAKTEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKR-GHVPYRNSKLTQILRDSLGDGSKV 389 (630)
Q Consensus 312 -~~~~~~skL~lVDLAGSEr~~kt~a~g~rl~E~~~INkSLsaLg~VI~aL~~~~-~hiPYRdSKLT~LLqdsLgGnskT 389 (630)
......|+|+|||||||||+.++++.|++++|+.+||+||++||+||.||++++ .||||||||||+||||+|||||+|
T Consensus 245 ~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt 324 (372)
T 3b6u_A 245 GENHIRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNAKT 324 (372)
T ss_dssp -CCCEEEEEEEEEECCCCCE----------EEEGGGCCHHHHHHHHHHHHHHCC---CCCGGGSHHHHHTTTTTTSSSEE
T ss_pred CCcceEEEEEEEEECCCCccccccCcchhhhhhHhhhhhhHHHHHHHHHHHhcCCCCCCcccccHHHHHHHHhcCCCccE
Confidence 245677999999999999999999999999999999999999999999998765 699999999999999999999999
Q ss_pred eeEEecCCCCCcHHHhHHHHHHHHHhhcccccccccHHHHH
Q 006826 390 LMLVHASPCEEDVGETICSLSFAKRARGIESNRELSEDLKK 430 (630)
Q Consensus 390 ~mI~~VSP~~~~~~ETlsTLrFA~rar~I~~~~~~~~~~~~ 430 (630)
+||+||||+..+++||++||+||+||++|++.|.+|+++..
T Consensus 325 ~mIa~vsP~~~~~~ETlsTLrfA~rak~I~n~~~~n~~~~~ 365 (372)
T 3b6u_A 325 VMVANVGPASYNVEETLTTLRYANRAKNIKNKPRVNEDPKD 365 (372)
T ss_dssp EEEEEECCBGGGHHHHHHHHHHHHHHTTCBCCCCCCC----
T ss_pred EEEEEeCCcccCHHHHHHHHHHHHHHhhccccceecCChHH
Confidence 99999999999999999999999999999999999998653
No 11
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=100.00 E-value=1.5e-90 Score=739.93 Aligned_cols=328 Identities=37% Similarity=0.567 Sum_probs=299.8
Q ss_pred CCCCEEEEEEeCCCCcccCC-CccccEEec-CCEEEEEeCCceEEEEeceeeCCCCChhhHHHhh-HHHHHHhhcCccee
Q 006826 90 IKGCIRVFCRVRSFLVTGRR-VIHEPVLTE-LEKVVVRSGGSKKEFGFDKVFNQAASQEDVFVEV-EPILRSALDGHNVC 166 (630)
Q Consensus 90 lkG~IrV~~RvRP~~~~e~~-~~~~~v~~~-~~~v~v~~~~~~~~F~FD~VF~~~atQ~eVf~~v-~plV~svl~GyN~~ 166 (630)
-.|+|||+|||||+...|.. +...++.+. +..+.+......+.|.||+||+++++|++||+.+ .|+|+++++|||+|
T Consensus 4 ~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~t 83 (355)
T 1goj_A 4 SANSIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDSKEAQGSFTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYNGT 83 (355)
T ss_dssp SSCBCEEEEEECCCCHHHHTTTCCBCEEECSTTEEEECSTTCCEEEECSEEECTTCCHHHHHHHHTHHHHHHHTTTCCEE
T ss_pred CCCCeEEEEECCCCChHHhhcCCceEEEEcCCCeEEEccCCCccEEeeCeEECCCCccHHHHHHHHHHHHHHHhCCCcce
Confidence 46999999999999986543 345566665 4555555555568999999999999999999975 99999999999999
Q ss_pred EEecccCCCCcceeecCC----CCCCCchhHHHHHHHHHHhcC-CCceEEEEEeEEEEecceeeecCCCCCccchhhhhc
Q 006826 167 VLAYGQTGTGKTFTMDGT----SDQPGIVPRALEELFRQAALD-NSSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAAT 241 (630)
Q Consensus 167 IfaYGqTGSGKTyTM~G~----~~~~GIIpRal~~LF~~~~~~-~~~~~~v~vS~lEIYnE~I~DLL~~~~~~~~~~~~~ 241 (630)
|||||||||||||||+|+ ++++|||||++++||+.+... ..+.|.|+|||+|||||+|+|||++...
T Consensus 84 ifAYGqTGSGKTyTm~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~-------- 155 (355)
T 1goj_A 84 VFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQND-------- 155 (355)
T ss_dssp EEEECSTTSSHHHHHTBSCTTSTTTBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSTTCC--------
T ss_pred EEEECCCCCCcceEeecCCCCCcccCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEECCEEEEcccCccC--------
Confidence 999999999999999996 467899999999999987654 4789999999999999999999987643
Q ss_pred ccCeeEEeCCCCCEEEcCcEEEEcCChHHHHHHHHhhhhcccccccCCCCCCCCcEEEEEEEEEEecCCCCCceEEeEeE
Q 006826 242 RCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDALEAKTEVSKLW 321 (630)
Q Consensus 242 ~~~L~i~ed~~g~v~v~glt~v~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~I~v~~~~~~~~~~~~~skL~ 321 (630)
.+.|++++.++++|.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|.+.+... +....|+|+
T Consensus 156 --~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~-~~~~~skL~ 232 (355)
T 1goj_A 156 --NLPVHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVET-GSAKSGQLF 232 (355)
T ss_dssp --SCCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEEEEEEEEETTT-TEEEEEEEE
T ss_pred --CceeEEcCCCCEeecCCEEEeCCCHHHHHHHHHHHHhhcCcccccCCCCCCCceEEEEEEEEEeccCC-CceeeeEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999876554 567789999
Q ss_pred EEecCCCccccccCCCcchhhhhhhhhHhHHHHHHHHHHHHhC-CCCccCCCCchhhhhhcccCCCceeeeEEecCCCCC
Q 006826 322 MVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRK-RGHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEE 400 (630)
Q Consensus 322 lVDLAGSEr~~kt~a~g~rl~E~~~INkSLsaLg~VI~aL~~~-~~hiPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~ 400 (630)
|||||||||+.++++.|++++|+.+||+||++||+||.||+++ ..||||||||||+||||+|||||+|+||+||||+..
T Consensus 233 lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGns~t~mI~~isP~~~ 312 (355)
T 1goj_A 233 LVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSY 312 (355)
T ss_dssp EEECCCCSCCTTSSSCCCCTTTTGGGTSHHHHHHHHHHHHHHCSCSCCCGGGCHHHHHTGGGTTSSCEEEEEEEECCBGG
T ss_pred EEECCCCCcccccccchhhHHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCccCHHHHHHHHHhCCCCcEEEEEEECcccc
Confidence 9999999999999999999999999999999999999999985 589999999999999999999999999999999999
Q ss_pred cHHHhHHHHHHHHHhhcccccccccHHH
Q 006826 401 DVGETICSLSFAKRARGIESNRELSEDL 428 (630)
Q Consensus 401 ~~~ETlsTLrFA~rar~I~~~~~~~~~~ 428 (630)
+++||++||+||+||++|++.+.+|+++
T Consensus 313 ~~~ETl~TL~fA~rak~I~n~~~vn~~~ 340 (355)
T 1goj_A 313 NDAETLSTLRFGMRAKSIKNKAKVNAEL 340 (355)
T ss_dssp GHHHHHHHHHHHHHHHTCBCCCCCCSSS
T ss_pred cHHHHHHHHHHHHHHhhccCCceeCCCC
Confidence 9999999999999999999999999764
No 12
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=8.7e-91 Score=741.98 Aligned_cols=325 Identities=34% Similarity=0.509 Sum_probs=255.5
Q ss_pred HhhhhhcCCCCEEEEEEeCCCCcccC-CCccccEEecCCEEEEEe----------------------CCceEEEEeceee
Q 006826 83 ALNKILDIKGCIRVFCRVRSFLVTGR-RVIHEPVLTELEKVVVRS----------------------GGSKKEFGFDKVF 139 (630)
Q Consensus 83 l~n~~~elkG~IrV~~RvRP~~~~e~-~~~~~~v~~~~~~v~v~~----------------------~~~~~~F~FD~VF 139 (630)
+|+..+|++|+|||+|||||++..|. .+...++.+.++.+.+.+ ....+.|.||+||
T Consensus 1 ~~~~~~d~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~vf 80 (355)
T 3lre_A 1 MSVTEEDLCHHMKVVVRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNKDLKFVFDAVF 80 (355)
T ss_dssp -----------CEEEEEECCCCHHHHHTTCCBSEEECSSSEEEEC------------------------CCEEEECSEEE
T ss_pred CCcChhhccCCCEEEEEeCcCChHHHhcCCceEEEecCCceEEecCCCCcceeecccccccccchhccCCCceEEeceEE
Confidence 46788999999999999999998664 334455555443333321 1123689999999
Q ss_pred CCCCChhhHHHhh-HHHHHHhhcCcceeEEecccCCCCcceeecCCCCCCCchhHHHHHHHHHHhcC-CCceEEEEEeEE
Q 006826 140 NQAASQEDVFVEV-EPILRSALDGHNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQAALD-NSSSVTFSMSML 217 (630)
Q Consensus 140 ~~~atQ~eVf~~v-~plV~svl~GyN~~IfaYGqTGSGKTyTM~G~~~~~GIIpRal~~LF~~~~~~-~~~~~~v~vS~l 217 (630)
+++++|++||+.+ .|+|+++++|||+||||||||||||||||+|+++++|||||++++||..+... ..+.|.|.|||+
T Consensus 81 ~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lf~~i~~~~~~~~~~v~vS~~ 160 (355)
T 3lre_A 81 DETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEPGVMYLTMLHLYKCMDEIKEEKICSTAVSYL 160 (355)
T ss_dssp CTTCCHHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEE
T ss_pred CCCCChHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeeccCCCCCCeeehhhhHHHHhhhhhccCceEEEEEEEE
Confidence 9999999999986 99999999999999999999999999999999999999999999999987654 367899999999
Q ss_pred EEecceeeecCCCCCccchhhhhcccCeeEEeCCCCCEEEcCcEEEEcCChHHHHHHHHhhhhcccccccCCCCCCCCcE
Q 006826 218 EVYMGSVRDLLAPKPVFKAYEAATRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSH 297 (630)
Q Consensus 218 EIYnE~I~DLL~~~~~~~~~~~~~~~~L~i~ed~~g~v~v~glt~v~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH 297 (630)
|||||+|+|||.+.. .+.+++++.++++|.|++++.|.+++|++.+|..|.++|++++|.||+.|||||
T Consensus 161 EIYnE~i~DLL~~~~-----------~l~ire~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH 229 (355)
T 3lre_A 161 EVYNEQIRDLLVNSG-----------PLAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSH 229 (355)
T ss_dssp EEETTEEEESSSCCC-----------CBEEEECTTSCEEEETCCCBCCCSHHHHHHHHHHHHHTSCBC-----CBCTTCE
T ss_pred EEECCEEEECcCCCC-----------CceeEEcCCCCEEeeeeeEEecCCHHHHHHHHHHHHhcCCcccccCcCCCCCCc
Confidence 999999999998643 489999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEEecCCC--CCceEEeEeEEEecCCCccccccCCCcchhhhhhhhhHhHHHHHHHHHHHHhC---CCCccCCC
Q 006826 298 CLMRITIFRHGDAL--EAKTEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRK---RGHVPYRN 372 (630)
Q Consensus 298 ~If~I~v~~~~~~~--~~~~~~skL~lVDLAGSEr~~kt~a~g~rl~E~~~INkSLsaLg~VI~aL~~~---~~hiPYRd 372 (630)
+||+|+|.+.+... ......|+|+|||||||||+.++++.|.+++|+.+||+||++||+||.||+++ ..||||||
T Consensus 230 ~if~i~v~~~~~~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRd 309 (355)
T 3lre_A 230 AVFQIYLRQQDKTASINQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQHIPYRN 309 (355)
T ss_dssp EEEEEEEEEEETTSCTTCCCCCEEEEEEECCCCCC-----------------CHHHHHHHHHHHHHC--------CCGGG
T ss_pred EEEEEEEEEecCCCCCCCCEEEEEEEEEECCCCCcCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCCccc
Confidence 99999998865432 23455799999999999999999999999999999999999999999999864 36999999
Q ss_pred CchhhhhhcccCCCceeeeEEecCCCCCcHHHhHHHHHHHHHhhcc
Q 006826 373 SKLTQILRDSLGDGSKVLMLVHASPCEEDVGETICSLSFAKRARGI 418 (630)
Q Consensus 373 SKLT~LLqdsLgGnskT~mI~~VSP~~~~~~ETlsTLrFA~rar~I 418 (630)
||||+||||+|||||+|+||+||||+..+++||++||+||+|||+|
T Consensus 310 SkLT~lL~dsLgGnskt~mIa~isP~~~~~~ETl~TL~fA~rak~I 355 (355)
T 3lre_A 310 SKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355 (355)
T ss_dssp SHHHHHTTTTSSTTSEEEEEEEECCBGGGHHHHHHHHHHHHHTC--
T ss_pred CHHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999999999999987
No 13
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=100.00 E-value=4.3e-90 Score=735.42 Aligned_cols=332 Identities=33% Similarity=0.512 Sum_probs=262.2
Q ss_pred hcCCCCEEEEEEeCCCCcccCCCccccEE--ec----CCEEEEEeCC---ceEEEEeceeeCCCCChhhHHHhhHHHHHH
Q 006826 88 LDIKGCIRVFCRVRSFLVTGRRVIHEPVL--TE----LEKVVVRSGG---SKKEFGFDKVFNQAASQEDVFVEVEPILRS 158 (630)
Q Consensus 88 ~elkG~IrV~~RvRP~~~~e~~~~~~~v~--~~----~~~v~v~~~~---~~~~F~FD~VF~~~atQ~eVf~~v~plV~s 158 (630)
++|||||||||||||+...|......+.. .+ ...+.+.... ..+.|.||+||+++++|++||++|.|+|++
T Consensus 1 m~lkgnIrV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~vf~~v~~lv~~ 80 (349)
T 3t0q_A 1 MALRGNIRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNEGRILSYNFQFDMIFEPSHTNKEIFEEIRQLVQS 80 (349)
T ss_dssp ----CEEEEEEEECCCCTTSCCCCTTEEECCCBC--CBEEEEEEECC--CEEEEEEESEEECTTCCHHHHHHHHHHHHHG
T ss_pred CCCCCCcEEEEEeCCCCccccccCceEEEeeccCCCCceEEEEcCCCCcccceeeecCEEECCCccHHHHHHHHHHHHHH
Confidence 47899999999999999877544322221 11 1235554432 247899999999999999999999999999
Q ss_pred hhcCcceeEEecccCCCCcceeecCCCCCCCchhHHHHHHHHHHhc--CCCceEEEEEeEEEEecceeeecCCCCCccch
Q 006826 159 ALDGHNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQAAL--DNSSSVTFSMSMLEVYMGSVRDLLAPKPVFKA 236 (630)
Q Consensus 159 vl~GyN~~IfaYGqTGSGKTyTM~G~~~~~GIIpRal~~LF~~~~~--~~~~~~~v~vS~lEIYnE~I~DLL~~~~~~~~ 236 (630)
+++|||+||||||||||||||||+|+ ++|||||++++||+.+.. ..++.|.|.|||+|||||+|+|||.+......
T Consensus 81 ~l~G~n~tifAYGqTGSGKTyTm~g~--~~Giipr~~~~lF~~~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~ 158 (349)
T 3t0q_A 81 SLDGYNVCIFAYGQTGSGKTYTMLNA--GDGMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDN 158 (349)
T ss_dssp GGTTCEEEEEEECSTTSSHHHHHHST--TTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTC-------
T ss_pred HHCCcceeEEEeCCCCCCCceEeCCC--CCchhhHHHHHHHHHHHHhhhcCceeEEEEEEEEEEcchhhccccccccccc
Confidence 99999999999999999999999996 469999999999997654 34789999999999999999999987643111
Q ss_pred h-hhhcccCeeEEeCC-CCCEEEcCcEEEEcCChHHHHHHHHhhhhcccccccCCCCCCCCcEEEEEEEEEEecCCCCCc
Q 006826 237 Y-EAATRCNLNIQTDA-KGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDALEAK 314 (630)
Q Consensus 237 ~-~~~~~~~L~i~ed~-~g~v~v~glt~v~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~I~v~~~~~~~~~~ 314 (630)
. .......+.|++++ .++++|.|++++.|.+++|++.+|..|.++|++++|.||+.|||||+||+|+|.+.+... +.
T Consensus 159 ~~~~~~~~~~~i~~~~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~-~~ 237 (349)
T 3t0q_A 159 IDEILDSQKHDIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNLHT-GE 237 (349)
T ss_dssp --------CCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHC------------CTGGGSEEEEEEEEEEEETTT-CC
T ss_pred cccccccccceeEEecCCCCEEEeCCEEEEeCCHHHHHHHHHHHHHhCcccccccccccCCcceEEEEEEEEEecCC-CC
Confidence 1 11123457787765 568999999999999999999999999999999999999999999999999999876555 56
Q ss_pred eEEeEeEEEecCCCccccccCCCcchhhhhhhhhHhHHHHHHHHHHHHhCC---CCccCCCCchhhhhhcccCCCceeee
Q 006826 315 TEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKR---GHVPYRNSKLTQILRDSLGDGSKVLM 391 (630)
Q Consensus 315 ~~~skL~lVDLAGSEr~~kt~a~g~rl~E~~~INkSLsaLg~VI~aL~~~~---~hiPYRdSKLT~LLqdsLgGnskT~m 391 (630)
...|+|+|||||||||+.++++.|++++|+.+||+||++||+||.||+.+. .||||||||||+||||+|||||+|+|
T Consensus 238 ~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGnskt~m 317 (349)
T 3t0q_A 238 TSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKRYIPFRNSKLTYLLQYSLVGDSKTLM 317 (349)
T ss_dssp EEEEEEEEEECCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCCCGGGSHHHHHHGGGSSTTCEEEE
T ss_pred eeEEEEEEEeCCCCCccccccCccccchhHHhhhHhHHHHHHHHHHHhcccCCCCcCCCcCCHHHHHHHHhcCCCceEEE
Confidence 678999999999999999999999999999999999999999999998765 49999999999999999999999999
Q ss_pred EEecCCCCCcHHHhHHHHHHHHHhhcccccc
Q 006826 392 LVHASPCEEDVGETICSLSFAKRARGIESNR 422 (630)
Q Consensus 392 I~~VSP~~~~~~ETlsTLrFA~rar~I~~~~ 422 (630)
|+||||+..+++||++||+||+||++|+..+
T Consensus 318 i~~vsP~~~~~~ETl~TL~fA~rv~~ik~~~ 348 (349)
T 3t0q_A 318 FVNIPPDPNHISETLNSLRFASKVNSTKIAK 348 (349)
T ss_dssp EEEECCCGGGHHHHHHHHHHHHHHHC-----
T ss_pred EEEeCCchhhHHHHHHHHHHHHHhhhcccCC
Confidence 9999999999999999999999999998754
No 14
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=100.00 E-value=2.9e-90 Score=755.94 Aligned_cols=335 Identities=37% Similarity=0.536 Sum_probs=278.1
Q ss_pred hhcCCCCEEEEEEeCCCCcccCC-CccccEEecCC--EEEEEeC----------------CceEEEEeceeeCC------
Q 006826 87 ILDIKGCIRVFCRVRSFLVTGRR-VIHEPVLTELE--KVVVRSG----------------GSKKEFGFDKVFNQ------ 141 (630)
Q Consensus 87 ~~elkG~IrV~~RvRP~~~~e~~-~~~~~v~~~~~--~v~v~~~----------------~~~~~F~FD~VF~~------ 141 (630)
..|++|+|||+|||||++..|.. +..+++.+++. .+.+... ...+.|.||+||++
T Consensus 33 ~~~~~~~vrV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~F~FD~vF~~~~~~~~ 112 (443)
T 2owm_A 33 SKDPGANVRVVVRVRAFLPRELERNAECIVEMDPATERTSLLVPQETDFADARGARSRRVLEEKSFTFDKSFWSHNTEDE 112 (443)
T ss_dssp -CCCCEECEEEEEEECCCHHHHHTTCCCCEEECSSSCEEEECCCC---------------CCCEEEECSEEEEESCTTST
T ss_pred cCCCCCCeEEEEEeCCCChHHhhcCCceEEEEcCCCccEEEecCCCcccccccccccccccCCceEecCeEeCCCCcCCc
Confidence 57899999999999999986643 34556666543 3333211 12478999999986
Q ss_pred -CCChhhHHHhh-HHHHHHhhcCcceeEEecccCCCCcceeecCCCCCCCchhHHHHHHHHHHhcC----CCceEEEEEe
Q 006826 142 -AASQEDVFVEV-EPILRSALDGHNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQAALD----NSSSVTFSMS 215 (630)
Q Consensus 142 -~atQ~eVf~~v-~plV~svl~GyN~~IfaYGqTGSGKTyTM~G~~~~~GIIpRal~~LF~~~~~~----~~~~~~v~vS 215 (630)
.++|++||+.+ .|+|+++|+|||+||||||||||||||||+|+++++|||||++++||..+... .++.|.|+||
T Consensus 113 ~~asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G~~~~~GIipr~~~~lF~~i~~~~~~~~~~~~~V~vS 192 (443)
T 2owm_A 113 HYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVS 192 (443)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTCCTTSCCHHHHHHHHHHHHHHHTTTTSTTCEEEEEEE
T ss_pred cCCCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEeecCCCCCchHHHHHHHHHHHHHhhhcccCCceEEEEEE
Confidence 48999999987 99999999999999999999999999999999999999999999999987643 4789999999
Q ss_pred EEEEecceeeecCCCCCccchhhhhcccCeeEEeCCCCCEEEcCcEEEEcCChHHHHHHHHhhhhcccccccCCCCCCCC
Q 006826 216 MLEVYMGSVRDLLAPKPVFKAYEAATRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSR 295 (630)
Q Consensus 216 ~lEIYnE~I~DLL~~~~~~~~~~~~~~~~L~i~ed~~g~v~v~glt~v~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSR 295 (630)
|+|||||+|+|||++.... .....|.|++++.++++|.||+++.|.+++|++.+|..|.++|++++|.||+.|||
T Consensus 193 ~lEIYnE~i~DLL~~~~~~-----~~~~~l~ire~~~~g~~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSR 267 (443)
T 2owm_A 193 YFEVYNEHVRDLLAPVVPN-----KPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSR 267 (443)
T ss_dssp EEEEETTEEEETTSCCCSS-----CCCCCCEEEEETTTEEEEETCCCEECCSHHHHHHHHHHHHTTSCBCSSSSSCBCTT
T ss_pred EEEEECCEeeEccCccccC-----CcccccceeECCCCCEeccCCEEEEcCCHHHHHHHHHHHHhhCCcccCcCCCccCC
Confidence 9999999999999875321 12346899999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEEEEEecCC---CCCceEEeEeEEEecCCCccccccCCCcchhhhhhhhhHhHHHHHHHHHHHHhCC-------
Q 006826 296 SHCLMRITIFRHGDA---LEAKTEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKR------- 365 (630)
Q Consensus 296 SH~If~I~v~~~~~~---~~~~~~~skL~lVDLAGSEr~~kt~a~g~rl~E~~~INkSLsaLg~VI~aL~~~~------- 365 (630)
||+||+|+|.+.... .......|+|+|||||||||+.++++.|++++|+.+||+||++||+||.||+++.
T Consensus 268 SH~Ifti~v~~~~~~~~~~~~~~~~skL~lVDLAGSER~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~~~~~~~ 347 (443)
T 2owm_A 268 SHAVFTIMLKQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPKSSASRPS 347 (443)
T ss_dssp EEEEEEEEEEEEC-------CCEEEEEEEEEECCCCCC--------------CCSSHHHHHHHHHHHHHCC---------
T ss_pred CeEEEEEEEEEeecccCCCCcceEEEEEEEEECCCCccccccCCccccccchhhhcHHHHHHHHHHHHHhcccccccccc
Confidence 999999999875422 1234567999999999999999999999999999999999999999999997643
Q ss_pred ---------------CCccCCCCchhhhhhcccCCCceeeeEEecCCCCCcHHHhHHHHHHHHHhhcccccccccH-HH
Q 006826 366 ---------------GHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVGETICSLSFAKRARGIESNRELSE-DL 428 (630)
Q Consensus 366 ---------------~hiPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~ETlsTLrFA~rar~I~~~~~~~~-~~ 428 (630)
.||||||||||+||||+|||||+|+||+||||+ +++||++||+||+||++|++.+.+|+ +.
T Consensus 348 ~~~~~g~~~~~~~~~~hVPYRdSkLTrLLqdsLgGnskT~mIa~iSP~--~~~ETlsTLrfA~rak~I~n~~~vN~~d~ 424 (443)
T 2owm_A 348 SPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPT--DYDETLSTLRYADQAKRIRTRAVVNQVDG 424 (443)
T ss_dssp ----------------CCCGGGSHHHHHSTTTTTSSCEEEEEEEECSS--CHHHHHHHHHHHHHHTTCEECCCCCCC--
T ss_pred cccccccccccccCCCcccCcccHhHHHHHHhhCCCCcEEEEEEeccc--cHHHHHHHHHHHHHHhhccccceecccCC
Confidence 489999999999999999999999999999996 59999999999999999999999998 54
No 15
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=100.00 E-value=1.4e-90 Score=741.44 Aligned_cols=330 Identities=37% Similarity=0.570 Sum_probs=275.1
Q ss_pred cCCCCEEEEEEeCCCCcccCC-CccccEEecC--CEEEEEeC-----CceEEEEeceeeCCCCChhhHHHhh-HHHHHHh
Q 006826 89 DIKGCIRVFCRVRSFLVTGRR-VIHEPVLTEL--EKVVVRSG-----GSKKEFGFDKVFNQAASQEDVFVEV-EPILRSA 159 (630)
Q Consensus 89 elkG~IrV~~RvRP~~~~e~~-~~~~~v~~~~--~~v~v~~~-----~~~~~F~FD~VF~~~atQ~eVf~~v-~plV~sv 159 (630)
+.+|+|||+|||||+...|.. +...++..++ ..+.+..+ ...+.|.||+||+++++|++||+++ .|+|+++
T Consensus 5 ~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~ 84 (359)
T 1x88_A 5 EKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVVCPILDEV 84 (359)
T ss_dssp ----CCEEEEEECCCCHHHHHTTCCCCEEEETTTTEEEEEEEEETTEEEEEEEECSEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCChhhhhcCCceEEEEcCCCcEEEEeCCCccCCcCceEEeceEEEeccCchhHHHHHHHHHhHHHH
Confidence 457999999999999986643 3445565554 45655432 1348999999999999999999986 9999999
Q ss_pred hcCcceeEEecccCCCCcceeecCCCC-----------CCCchhHHHHHHHHHHhcCCCceEEEEEeEEEEecceeeecC
Q 006826 160 LDGHNVCVLAYGQTGTGKTFTMDGTSD-----------QPGIVPRALEELFRQAALDNSSSVTFSMSMLEVYMGSVRDLL 228 (630)
Q Consensus 160 l~GyN~~IfaYGqTGSGKTyTM~G~~~-----------~~GIIpRal~~LF~~~~~~~~~~~~v~vS~lEIYnE~I~DLL 228 (630)
++|||+||||||||||||||||+|+.. .+|||||++++||+.+.. .++.|.|+|||+|||||+|+|||
T Consensus 85 l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~-~~~~~~v~vS~~EIYnE~i~DLL 163 (359)
T 1x88_A 85 IMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTD-NGTEFSVKVSLLEIYNEELFDLL 163 (359)
T ss_dssp HTTCEEEEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHHHHHHHHHHTSS-SSEEEEEEEEEEEEETTEEEETT
T ss_pred hCCCceEEEEeCCCCCCCceEEeccCCccccccccccccCCchHHHHHHHHHHHhc-cCceEEEEEEEEEEeCceeeehh
Confidence 999999999999999999999999754 369999999999998764 47899999999999999999999
Q ss_pred CCCCccchhhhhcccCeeEEeCC--CCCEEEcCcEEEEcCChHHHHHHHHhhhhcccccccCCCCCCCCcEEEEEEEEEE
Q 006826 229 APKPVFKAYEAATRCNLNIQTDA--KGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFR 306 (630)
Q Consensus 229 ~~~~~~~~~~~~~~~~L~i~ed~--~g~v~v~glt~v~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~I~v~~ 306 (630)
++... ....+.+++++ +++++|.|++++.|.+++|++.+|..|.++|++++|.||+.|||||+||+|+|..
T Consensus 164 ~~~~~-------~~~~l~i~~~~~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~ 236 (359)
T 1x88_A 164 NPSSD-------VSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHM 236 (359)
T ss_dssp CTTSC-------TTCCBEEEEETTEEEEEEEETCCCEEECSGGGHHHHHHHHHHHHHHHHHHSTTHHHHCEEEEEEEEEE
T ss_pred ccccc-------ccccceEEeccCCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCccEEEEEEEEE
Confidence 87653 12358899887 4789999999999999999999999999999999999999999999999999987
Q ss_pred ecCCCC--CceEEeEeEEEecCCCccccccCCCcchhhhhhhhhHhHHHHHHHHHHHHhCCCCccCCCCchhhhhhcccC
Q 006826 307 HGDALE--AKTEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKRGHVPYRNSKLTQILRDSLG 384 (630)
Q Consensus 307 ~~~~~~--~~~~~skL~lVDLAGSEr~~kt~a~g~rl~E~~~INkSLsaLg~VI~aL~~~~~hiPYRdSKLT~LLqdsLg 384 (630)
.....+ .....|+|+|||||||||+.++++.|++++|+.+||+||++||+||.||.++..||||||||||+||||+||
T Consensus 237 ~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLg 316 (359)
T 1x88_A 237 KETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKLTRILQDSLG 316 (359)
T ss_dssp EEECTTSCEEEEEEEEEEEECCCCCC---------------CCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTGGGSS
T ss_pred ecccCCCCceEEEEEEEEEcCCCCCcccccCCcccchHHHhhhhHHHHHHHHHHHHHhcCCCCCccccchHHHHHHHHhC
Confidence 543222 334679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeEEecCCCCCcHHHhHHHHHHHHHhhcccccccccH
Q 006826 385 DGSKVLMLVHASPCEEDVGETICSLSFAKRARGIESNRELSE 426 (630)
Q Consensus 385 GnskT~mI~~VSP~~~~~~ETlsTLrFA~rar~I~~~~~~~~ 426 (630)
|||+|+||+||||+..+++||++||+||+||++|+|.|.+|+
T Consensus 317 Gnskt~mIa~vsP~~~~~~ETl~TLrfA~rak~I~n~p~vn~ 358 (359)
T 1x88_A 317 GRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 358 (359)
T ss_dssp SSSEEEEEEEECCCGGGHHHHHHHHHHHHHHTTCCCCCC---
T ss_pred CCCeEEEEEEECCCcccHHHHHHHHHHHHHHhhccCcceeCC
Confidence 999999999999999999999999999999999999999986
No 16
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=100.00 E-value=3.3e-90 Score=729.59 Aligned_cols=315 Identities=36% Similarity=0.542 Sum_probs=287.3
Q ss_pred cCCCCEEEEEEeCCCCcccCC-CccccEEec-CCEEEEEeCCceEEEEeceeeCCCCChhhHHHhh-HHHHHHhhcCcce
Q 006826 89 DIKGCIRVFCRVRSFLVTGRR-VIHEPVLTE-LEKVVVRSGGSKKEFGFDKVFNQAASQEDVFVEV-EPILRSALDGHNV 165 (630)
Q Consensus 89 elkG~IrV~~RvRP~~~~e~~-~~~~~v~~~-~~~v~v~~~~~~~~F~FD~VF~~~atQ~eVf~~v-~plV~svl~GyN~ 165 (630)
..+|||||+|||||+...|.. +...++.+. .+.+.+ ..+.|.||+||+++++|++||+++ .|+|+++++|||+
T Consensus 4 ~~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~----~~~~f~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G~n~ 79 (325)
T 1bg2_A 4 LAECNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVI----ASKPYAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNG 79 (325)
T ss_dssp CSSCEEEEEEEECCCCHHHHHHTCCBCCEEETTTEEEE----TTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCE
T ss_pred CCCCCEEEEEEcCCCChhHhccCCeeEEEECCCCeEEE----CCEEEECCeEeCCCCCHHHHHHHHhhhhHHHHhCCCeE
Confidence 357999999999999986643 233344444 445544 237899999999999999999986 9999999999999
Q ss_pred eEEecccCCCCcceeecCCCC---CCCchhHHHHHHHHHHhc-CCCceEEEEEeEEEEecceeeecCCCCCccchhhhhc
Q 006826 166 CVLAYGQTGTGKTFTMDGTSD---QPGIVPRALEELFRQAAL-DNSSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAAT 241 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM~G~~~---~~GIIpRal~~LF~~~~~-~~~~~~~v~vS~lEIYnE~I~DLL~~~~~~~~~~~~~ 241 (630)
||||||||||||||||+|+.. .+|||||++++||+.+.. ..++.|.|++||+|||||+|+|||++...
T Consensus 80 tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~~-------- 151 (325)
T 1bg2_A 80 TIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKT-------- 151 (325)
T ss_dssp EEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHHCSSEEEEEEEEEEEEETTEEEESSCTTCC--------
T ss_pred EEEEECCCCCCCceEecccCCCcccCccHHHHHHHHHHHHHhccCCceEEEEEEEEEEecCeeeecccCCCC--------
Confidence 999999999999999999754 459999999999998754 45789999999999999999999986543
Q ss_pred ccCeeEEeCCCCCEEEcCcEEEEcCChHHHHHHHHhhhhcccccccCCCCCCCCcEEEEEEEEEEecCCCCCceEEeEeE
Q 006826 242 RCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDALEAKTEVSKLW 321 (630)
Q Consensus 242 ~~~L~i~ed~~g~v~v~glt~v~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~I~v~~~~~~~~~~~~~skL~ 321 (630)
.+.++++++++++|.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|.+.+... .....|+|+
T Consensus 152 --~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~-~~~~~skl~ 228 (325)
T 1bg2_A 152 --NLSVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQT-EQKLSGKLY 228 (325)
T ss_dssp --SBCEEECTTSCEEETTCCCEEECSHHHHHHHHHHHHHHTTTTCSCHHHHHHHSEEEEEEEEEEEETTT-CCEEEEEEE
T ss_pred --CceEEECCCCCEEecCceEEeCCCHHHHHHHHHHHHhhCceeecCCCCCCCCCeEEEEEEEEEEecCC-CcEEEEEEE
Confidence 68999999999999999999999999999999999999999999999999999999999999876554 566789999
Q ss_pred EEecCCCccccccCCCcchhhhhhhhhHhHHHHHHHHHHHHhCCCCccCCCCchhhhhhcccCCCceeeeEEecCCCCCc
Q 006826 322 MVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKRGHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEED 401 (630)
Q Consensus 322 lVDLAGSEr~~kt~a~g~rl~E~~~INkSLsaLg~VI~aL~~~~~hiPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~ 401 (630)
|||||||||+.++++.|.+++|+.+||+||++||+||.||+++..||||||||||+||||+|||||+|+||+||||+..+
T Consensus 229 lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGns~t~mia~vsP~~~~ 308 (325)
T 1bg2_A 229 LVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYN 308 (325)
T ss_dssp EEECCCSCCCCCCSSSCTTSCCCCCCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHGGGTSSSSCEEEEEEEECCBGGG
T ss_pred EEECCCCCcccccCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHhCCCCcEEEEEEECCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHHHhhcc
Q 006826 402 VGETICSLSFAKRARGI 418 (630)
Q Consensus 402 ~~ETlsTLrFA~rar~I 418 (630)
++||++||+||+|||+|
T Consensus 309 ~~ETl~TL~fa~rak~I 325 (325)
T 1bg2_A 309 ESETKSTLLFGQRAKTI 325 (325)
T ss_dssp HHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHhccC
Confidence 99999999999999987
No 17
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=100.00 E-value=2.4e-89 Score=728.90 Aligned_cols=329 Identities=34% Similarity=0.497 Sum_probs=269.1
Q ss_pred CCCCEEEEEEeCCCCc-ccCCCccccEEec---C----CEEEEEeC---CceEEEEeceeeCCCCChhhHHHhhHHHHHH
Q 006826 90 IKGCIRVFCRVRSFLV-TGRRVIHEPVLTE---L----EKVVVRSG---GSKKEFGFDKVFNQAASQEDVFVEVEPILRS 158 (630)
Q Consensus 90 lkG~IrV~~RvRP~~~-~e~~~~~~~v~~~---~----~~v~v~~~---~~~~~F~FD~VF~~~atQ~eVf~~v~plV~s 158 (630)
|||||||||||||+.. .|. ....++.+. + ..+.+... ...+.|.||+||+++++|++||++|.|+|++
T Consensus 1 lk~nIrV~vRvRP~~~~~e~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~v~~lv~~ 79 (347)
T 1f9v_A 1 MRGNIRVYCRIRPALKNLEN-SDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKEVGQLVQS 79 (347)
T ss_dssp --CEEEEEEEECCCCTTTCC-CTTEEEEECCCBTTTTBEEEEEEEGGGTTCEEEEEESEEECTTCCHHHHHHHHHHHHGG
T ss_pred CCCCeEEEEEeCCCCccccc-CCCceEEEecccCCCCceEEEEecCCCCcCceEEeeCEEECCCCCHHHHHHHHHHHHHH
Confidence 6899999999999987 332 222233322 1 23555432 3458999999999999999999999999999
Q ss_pred hhcCcceeEEecccCCCCcceeecCCCCCCCchhHHHHHHHHHHhc--CCCceEEEEEeEEEEecceeeecCCCCCccch
Q 006826 159 ALDGHNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQAAL--DNSSSVTFSMSMLEVYMGSVRDLLAPKPVFKA 236 (630)
Q Consensus 159 vl~GyN~~IfaYGqTGSGKTyTM~G~~~~~GIIpRal~~LF~~~~~--~~~~~~~v~vS~lEIYnE~I~DLL~~~~~~~~ 236 (630)
+++|||+||||||||||||||||+|+ ++|||||++++||+.+.. ..++.|.|+|||+|||||+|+|||++......
T Consensus 80 ~l~G~n~tifAYGqTGSGKTyTM~G~--~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~ 157 (347)
T 1f9v_A 80 SLDGYNVCIFAYGQTGSGKTFTMLNP--GDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKE 157 (347)
T ss_dssp GGGTCCEEEEEECCTTSSHHHHHHST--TTSHHHHHHHHHHHHHHHHGGGTCEEEEEEEEEEEETTEEEETTC-------
T ss_pred hcCCceeEEEEECCCCCCCcEeccCC--CCCchHHHHHHHHHHHHhhhhcCCceEEEEEEEEEECCeeeeccCCcccccc
Confidence 99999999999999999999999996 579999999999998764 34789999999999999999999987653110
Q ss_pred hhhhcccCeeEEeC-CCCCEEEcCcEEEEcCChHHHHHHHHhhhhcccccccCCCCCCCCcEEEEEEEEEEecCCCCCce
Q 006826 237 YEAATRCNLNIQTD-AKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDALEAKT 315 (630)
Q Consensus 237 ~~~~~~~~L~i~ed-~~g~v~v~glt~v~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~I~v~~~~~~~~~~~ 315 (630)
. ......+.|+++ ..++++|.|++++.|.+++|++.+|..|.++|++++|.||+.|||||+||+|+|.+.+... +..
T Consensus 158 ~-~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~-~~~ 235 (347)
T 1f9v_A 158 D-TSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAKT-GAH 235 (347)
T ss_dssp -------CCCEEEETTTTEEEETTCCCEECSSGGGHHHHHHHHC-----------CCGGGSEEEEEEEEEEECC---CCE
T ss_pred c-cccCCceeEEEecCCCceEecCCEEEEcCCHHHHHHHHHHHHhccceeeccCCCCCCCceEEEEEEEEEecCCC-Cce
Confidence 0 011234678776 4688999999999999999999999999999999999999999999999999998876544 566
Q ss_pred EEeEeEEEecCCCccccccCCCcchhhhhhhhhHhHHHHHHHHHHHHhCC---CCccCCCCchhhhhhcccCCCceeeeE
Q 006826 316 EVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKR---GHVPYRNSKLTQILRDSLGDGSKVLML 392 (630)
Q Consensus 316 ~~skL~lVDLAGSEr~~kt~a~g~rl~E~~~INkSLsaLg~VI~aL~~~~---~hiPYRdSKLT~LLqdsLgGnskT~mI 392 (630)
..|+|+|||||||||+.++++.|++++|+.+||+||++||+||.||+++. .||||||||||+||||+|||||+|+||
T Consensus 236 ~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGnskt~mI 315 (347)
T 1f9v_A 236 SYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMF 315 (347)
T ss_dssp EEEEEEEEECCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTSCC---CCCCGGGSHHHHHHHHHHSTTCEEEEE
T ss_pred eeeEEEEEECCCCccccccccchhhhHHHHHHhHHHHHHHHHHHHHhcccCCCCcCccccCHHHHHHHHHhCCCccEEEE
Confidence 78999999999999999999999999999999999999999999998776 899999999999999999999999999
Q ss_pred EecCCCCCcHHHhHHHHHHHHHhhccccccc
Q 006826 393 VHASPCEEDVGETICSLSFAKRARGIESNRE 423 (630)
Q Consensus 393 ~~VSP~~~~~~ETlsTLrFA~rar~I~~~~~ 423 (630)
+||||+..+++||++||+||+||++|+.++.
T Consensus 316 ~~vsP~~~~~~ETl~TLrfA~r~~~i~~~~r 346 (347)
T 1f9v_A 316 VNISPSSSHINETLNSLRFASKVNSTRLVSR 346 (347)
T ss_dssp EEECCSGGGHHHHHHHHHHHHHHCCTTTC--
T ss_pred EEeCCccccHHHHHHHHHHHHHHhhhccCCC
Confidence 9999999999999999999999999998763
No 18
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=100.00 E-value=1.3e-89 Score=735.70 Aligned_cols=327 Identities=35% Similarity=0.552 Sum_probs=278.2
Q ss_pred CCCEEEEEEeCCCCcccCC-CccccEEecCCEEEEEeCC----ceEEEEeceeeCCC--------CChhhHHHhh-HHHH
Q 006826 91 KGCIRVFCRVRSFLVTGRR-VIHEPVLTELEKVVVRSGG----SKKEFGFDKVFNQA--------ASQEDVFVEV-EPIL 156 (630)
Q Consensus 91 kG~IrV~~RvRP~~~~e~~-~~~~~v~~~~~~v~v~~~~----~~~~F~FD~VF~~~--------atQ~eVf~~v-~plV 156 (630)
.++|||+|||||+...|.. +..+++.++++.+.+.... ..+.|.||+||++. ++|++||+++ .|+|
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~asQ~~Vy~~~~~plv 82 (366)
T 2zfi_A 3 GASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEML 82 (366)
T ss_dssp -CCEEEEEEECCCCHHHHHTTCCBCEEEETTEEEECCTTCTTSCCEEEECSEEEECSSCTTSSSCCCHHHHHHHTHHHHH
T ss_pred CCCcEEEEECCCCChhhccCCCCeEEEECCCcEEEeccCCCCCCceEEecceEeecCccccccccCcHHHHHHHHHHHHH
Confidence 4799999999999986643 4456677777777775432 35899999999987 8999999987 9999
Q ss_pred HHhhcCcceeEEecccCCCCcceeecCCC--CCCCchhHHHHHHHHHHhcC--CCceEEEEEeEEEEecceeeecCCCCC
Q 006826 157 RSALDGHNVCVLAYGQTGTGKTFTMDGTS--DQPGIVPRALEELFRQAALD--NSSSVTFSMSMLEVYMGSVRDLLAPKP 232 (630)
Q Consensus 157 ~svl~GyN~~IfaYGqTGSGKTyTM~G~~--~~~GIIpRal~~LF~~~~~~--~~~~~~v~vS~lEIYnE~I~DLL~~~~ 232 (630)
+++++|||+||||||||||||||||+|+. +++|||||++++||+.+... ..+.|.|+|||+|||||+|+|||++..
T Consensus 83 ~~~l~G~N~tifAYGqTGSGKTyTm~G~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~ 162 (366)
T 2zfi_A 83 QHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKN 162 (366)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHHTBCSGGGCBCHHHHHHHHHHHHHHTCCCTTEEEEEEEEEEEEETTEEEETTCTTT
T ss_pred HHHhcCCeeEEEEeCCCCCCCceEeeCCCccCCCccHHHHHHHHHHHHhhcccCCeeEEEEEEEEEeeCCeEEEcccccc
Confidence 99999999999999999999999999984 57899999999999988754 368999999999999999999998764
Q ss_pred ccchhhhhcccCeeEEeCCCCCEEEcCcEEEEcCChHHHHHHHHhhhhcccccccCCCCCCCCcEEEEEEEEEEecCCCC
Q 006826 233 VFKAYEAATRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDALE 312 (630)
Q Consensus 233 ~~~~~~~~~~~~L~i~ed~~g~v~v~glt~v~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~I~v~~~~~~~~ 312 (630)
. ..|.|++++.++++|.|++++.|.+++|++.+|..|.++|++++|.||+.|||||+||+|+|.+......
T Consensus 163 ~---------~~l~ire~~~~g~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~ 233 (366)
T 2zfi_A 163 K---------GNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAE 233 (366)
T ss_dssp C---------SCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTSGGGGTTTHHHHSEEEEEEEEEEEEECTT
T ss_pred C---------CCceEEEcCCCCEEEeCCEEEEECCHHHHHHHHHHHhhccccccccCCCCCCcceEEEEEEEEEecccCC
Confidence 3 3689999999999999999999999999999999999999999999999999999999999987543221
Q ss_pred ---CceEEeEeEEEecCCCccccccCCCcchhhhhhhhhHhHHHHHHHHHHHHh------------CCCCccCCCCchhh
Q 006826 313 ---AKTEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRR------------KRGHVPYRNSKLTQ 377 (630)
Q Consensus 313 ---~~~~~skL~lVDLAGSEr~~kt~a~g~rl~E~~~INkSLsaLg~VI~aL~~------------~~~hiPYRdSKLT~ 377 (630)
.....|+|+|||||||||+.++++.|.+++|+.+||+||++||+||.||++ +..||||||||||+
T Consensus 234 ~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~~hvPyRdSkLT~ 313 (366)
T 2zfi_A 234 TNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTW 313 (366)
T ss_dssp TTCEEEEEEEEEEEECCCGGGC------CCCHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCGGGSHHHH
T ss_pred CCccceeEeEEEEEeCCCCccccccCCCccchhhhhhHhHHHHHHHHHHHHHHhcccccccccccccCCcccccccHHHH
Confidence 234679999999999999999999999999999999999999999999986 35799999999999
Q ss_pred hhhcccCCCceeeeEEecCCCCCcHHHhHHHHHHHHHhhcccccccccH
Q 006826 378 ILRDSLGDGSKVLMLVHASPCEEDVGETICSLSFAKRARGIESNRELSE 426 (630)
Q Consensus 378 LLqdsLgGnskT~mI~~VSP~~~~~~ETlsTLrFA~rar~I~~~~~~~~ 426 (630)
||||+|||||+|+||+||||+..+++||++||+||+||++|++.+.++.
T Consensus 314 lLqdsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~~~~~~ 362 (366)
T 2zfi_A 314 LLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVNH 362 (366)
T ss_dssp HTGGGSSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHTC----------
T ss_pred HHHHHhCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCCCCCCC
Confidence 9999999999999999999999999999999999999999999988753
No 19
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=100.00 E-value=9.8e-90 Score=737.91 Aligned_cols=332 Identities=37% Similarity=0.548 Sum_probs=277.1
Q ss_pred hhcCCCCEEEEEEeCCCCcccCC-CccccEEec-CCEEEEEe---CCceEEEEeceeeCCCCChhhHHHhh-HHHHHHhh
Q 006826 87 ILDIKGCIRVFCRVRSFLVTGRR-VIHEPVLTE-LEKVVVRS---GGSKKEFGFDKVFNQAASQEDVFVEV-EPILRSAL 160 (630)
Q Consensus 87 ~~elkG~IrV~~RvRP~~~~e~~-~~~~~v~~~-~~~v~v~~---~~~~~~F~FD~VF~~~atQ~eVf~~v-~plV~svl 160 (630)
-.+.+++|||||||||+...|.. ....++.+. +..+.+.. ....+.|.||+||+++++|++||+.+ .|+|+++|
T Consensus 18 ~~~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~vf~~~~~Q~~Vy~~~~~plv~~~l 97 (373)
T 2wbe_C 18 QKKSNQNIQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTLDSKLTKKFTFDRSFGPESKQCDVYSVVVSPLIEEVL 97 (373)
T ss_dssp CCCCCEECEEEEEECCCCHHHHHHTCCBCEEEETTTEEEESSSSSSTTCEEEECSEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCeEEEEEcCCCChhhhccCCCceEEEcCCCeEEEecCCCCCCceEEeccEEeccccchhHHHHHHHHHHHHHHh
Confidence 34678999999999999986643 234455544 45555542 23358999999999999999999985 99999999
Q ss_pred cCcceeEEecccCCCCcceeecCCCC-----------CCCchhHHHHHHHHHHhcCCCceEEEEEeEEEEecceeeecCC
Q 006826 161 DGHNVCVLAYGQTGTGKTFTMDGTSD-----------QPGIVPRALEELFRQAALDNSSSVTFSMSMLEVYMGSVRDLLA 229 (630)
Q Consensus 161 ~GyN~~IfaYGqTGSGKTyTM~G~~~-----------~~GIIpRal~~LF~~~~~~~~~~~~v~vS~lEIYnE~I~DLL~ 229 (630)
+|||+||||||||||||||||+|+.. ++|||||++++||+.+... .+.|.|+|||+|||||+|+|||+
T Consensus 98 ~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~~-~~~~~v~vS~~EIYnE~i~DLL~ 176 (373)
T 2wbe_C 98 NGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALSHLFDELRMM-EVEYTMRISYLELYNEELCDLLS 176 (373)
T ss_dssp HTCCEEEEEECSTTSSHHHHHTBSCSCCSSSCSSCTTTBCHHHHHHHHHHHHHHHC-CSCEEEEEEEEEEETTEEEESSC
T ss_pred CCceEEEEeecCCCCCcceecccCccccccccccccCCCcChHHHHHHHHHHHHhc-CceEEEEEEEEEEeCCeEEECCC
Confidence 99999999999999999999999754 6799999999999988654 57899999999999999999998
Q ss_pred CCCccchhhhhcccCeeEEeC--CCCCEEEcCcEEEEcCChHHHHHHHHhhhhcccccccCCCCCCCCcEEEEEEEEEEe
Q 006826 230 PKPVFKAYEAATRCNLNIQTD--AKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRH 307 (630)
Q Consensus 230 ~~~~~~~~~~~~~~~L~i~ed--~~g~v~v~glt~v~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~I~v~~~ 307 (630)
+... ..+.++++ .+|+++|.|++++.|.+++|++.+|..|.++|++++|.||+.|||||+||+|+|...
T Consensus 177 ~~~~---------~~l~i~~~~~~~g~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~ 247 (373)
T 2wbe_C 177 TDDT---------TKIRIFDDSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIR 247 (373)
T ss_dssp TTSC---------SCCCEEECSSSSSCEEETTCCCEEESSHHHHHHHHHHHHHHHTTTCSCHHHHHHHSEEEEEEEEEEC
T ss_pred CCCC---------CCceeEeccCCCCcEEecCceEEccCCHHHHHHHHHHHhhhhccccccCCCCCCCccEEEEEEEEEe
Confidence 7543 24678887 468899999999999999999999999999999999999999999999999999876
Q ss_pred cCCCC--CceEEeEeEEEecCCCccccccCCC-cchhhhhhhhhHhHHHHHHHHHHHHhCCCCccCCCCchhhhhhcccC
Q 006826 308 GDALE--AKTEVSKLWMVDLGGSERVLKTGAT-GQTLDEGRAINLSLSALADVIAALRRKRGHVPYRNSKLTQILRDSLG 384 (630)
Q Consensus 308 ~~~~~--~~~~~skL~lVDLAGSEr~~kt~a~-g~rl~E~~~INkSLsaLg~VI~aL~~~~~hiPYRdSKLT~LLqdsLg 384 (630)
..... .....|+|+|||||||||+.++++. |.+++|+.+||+||++||+||.||.++..||||||||||+||||+||
T Consensus 248 ~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLg 327 (373)
T 2wbe_C 248 ENGIEGEDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRAPHVPYRESKLTRLLQESLG 327 (373)
T ss_dssp TTCTTTCCEEEEEEEEEEECCCC--------------------CHHHHHHHHHHHHHHHCSSCCCGGGCHHHHHTHHHHH
T ss_pred cCCCCCCcceeEEEEEEEECCCCCccccccCccccchhHHHHHHHHHHHHHHHHHHHHcCCCcCccccchHHHHHHHHhC
Confidence 43322 3356799999999999999999988 99999999999999999999999999999999999999999999999
Q ss_pred CCceeeeEEecCCCCCcHHHhHHHHHHHHHhhcccccccccHHH
Q 006826 385 DGSKVLMLVHASPCEEDVGETICSLSFAKRARGIESNRELSEDL 428 (630)
Q Consensus 385 GnskT~mI~~VSP~~~~~~ETlsTLrFA~rar~I~~~~~~~~~~ 428 (630)
|||+|+||+||||+..+++||++||+||+||++|+|.|.+|+++
T Consensus 328 Gnskt~mIa~isP~~~~~~ETlsTLrfA~rak~I~n~p~vN~~~ 371 (373)
T 2wbe_C 328 GRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQNKPEVNQKL 371 (373)
T ss_dssp SSSEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEECCCCCEEC
T ss_pred CCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccccceecccc
Confidence 99999999999999999999999999999999999999999753
No 20
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=100.00 E-value=2.7e-89 Score=735.48 Aligned_cols=341 Identities=30% Similarity=0.411 Sum_probs=276.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCEEEEEEeCCCCcccCC-CccccEEec-CCEEEEEeCC---------ceE
Q 006826 63 EGEIVELRLKKRRLDEKRREALNKILDIKGCIRVFCRVRSFLVTGRR-VIHEPVLTE-LEKVVVRSGG---------SKK 131 (630)
Q Consensus 63 ~~~~~~l~~~~~~~~~~Rr~l~n~~~elkG~IrV~~RvRP~~~~e~~-~~~~~v~~~-~~~v~v~~~~---------~~~ 131 (630)
..++..+-++++.+...|+.+||+..+ +++|||+|||||++..|.. +...++.+. .+.+.+.... ..+
T Consensus 23 ~~~~~~~~~~~r~~~~~~~~~~~~~~~-~~~I~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~v~~~~~~~~~~~~~~~~ 101 (387)
T 2heh_A 23 NWEFARMIKEFRATLECHPLTMTDPIE-EHRICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLTKYLENQ 101 (387)
T ss_dssp CHHHHHHHHHHHHHCCCBCCCTTSCCC-CCSEEEEEEECCCCHHHHHTTCCBCEECCBSSEEEEEEEEECTTCCEEEEEE
T ss_pred CHhHHHHHHHHHHhhccCCCccCCCCC-CCCeEEEEECCCCChHHhccCCceEEEECCCCEEEEeCCCcccccccccccc
Confidence 456666667777777888999998887 9999999999999986643 334455554 3445544221 247
Q ss_pred EEEeceeeCCCCChhhHHHhh-HHHHHHhhcCcceeEEecccCCCCcceeecCC------CCCCCchhHHHHHHHHHHhc
Q 006826 132 EFGFDKVFNQAASQEDVFVEV-EPILRSALDGHNVCVLAYGQTGTGKTFTMDGT------SDQPGIVPRALEELFRQAAL 204 (630)
Q Consensus 132 ~F~FD~VF~~~atQ~eVf~~v-~plV~svl~GyN~~IfaYGqTGSGKTyTM~G~------~~~~GIIpRal~~LF~~~~~ 204 (630)
.|.||+||+++++|++||+.+ .|+|+++++|||+||||||||||||||||+|+ ..++|||||++++||..+..
T Consensus 102 ~F~FD~VF~~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipr~~~~lF~~~~~ 181 (387)
T 2heh_A 102 AFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMASRDVFLLKNQ 181 (387)
T ss_dssp EEECSEEECTTCCHHHHHHHTTHHHHHHHHTTCEEEEEEESCTTSSHHHHHC-----------CCHHHHHHHHHHHHHTS
T ss_pred EEeeeEEEecCCCceeehhhhHHHHHHHHhcCCceEEEEecCCCCCCCeEeccCCCCCCcccCCceehhhHHHHHHHhhc
Confidence 899999999999999999986 99999999999999999999999999999996 35789999999999998764
Q ss_pred C--CCceEEEEEeEEEEecceeeecCCCCCccchhhhhcccCeeEEeCCCCCEEEcCcEEEEcCChHHHHHHHHhhhhcc
Q 006826 205 D--NSSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAATRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVR 282 (630)
Q Consensus 205 ~--~~~~~~v~vS~lEIYnE~I~DLL~~~~~~~~~~~~~~~~L~i~ed~~g~v~v~glt~v~V~s~~e~~~ll~~g~~~R 282 (630)
. ..+.|.|+|||+|||||+|+|||++.. .+.|++|++++++|.|++++.|.+++|++.+|..|.++|
T Consensus 182 ~~~~~~~~~V~vS~~EIYnE~v~DLL~~~~-----------~l~i~ed~~~~v~v~gl~~~~V~s~~e~~~ll~~G~~~R 250 (387)
T 2heh_A 182 PCYRKLGLEVYVTFFEIYNGKLFDLLNKKA-----------KLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACR 250 (387)
T ss_dssp HHHHTTTCEEEEEEEEEETTEEEETTTTTE-----------ECEEEECTTCCEEEETCCCEEESSHHHHHHHHHHHHHHC
T ss_pred ccccCceEEEEEEEEEecCCeEEECCCCCc-----------cceEEEcCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhC
Confidence 3 367899999999999999999998643 489999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCcEEEEEEEEEEecCCCCCceEEeEeEEEecCCCccccccC-CCcchhhhhhhhhHhHHHHHHHHHHH
Q 006826 283 STSWTNVNEASSRSHCLMRITIFRHGDALEAKTEVSKLWMVDLGGSERVLKTG-ATGQTLDEGRAINLSLSALADVIAAL 361 (630)
Q Consensus 283 ~~~~T~~N~~SSRSH~If~I~v~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~-a~g~rl~E~~~INkSLsaLg~VI~aL 361 (630)
++++|.||+.|||||+||+|.|.... ...|+|+|||||||||+.+++ +.|++++|+.+||+||++||+||.||
T Consensus 251 ~~~~T~~N~~SSRSH~Ifti~v~~~~------~~~skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL 324 (387)
T 2heh_A 251 TSGQTFANSNSSRSHACFQIILRAKG------RMHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRAL 324 (387)
T ss_dssp ---------CGGGSEEEEEEEEESSS------SEEEEEEEEECCCCC---------------CHHHHHHHHHHHHHHHHH
T ss_pred CcccCcCcCCcccceEEEEEEEEECC------eeeeEEEEEECCCCccccccccccccchhhHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999997542 357999999999999998886 56788999999999999999999999
Q ss_pred HhCCCCccCCCCchhhhhhcc-cCCCceeeeEEecCCCCCcHHHhHHHHHHHHHhhccccc
Q 006826 362 RRKRGHVPYRNSKLTQILRDS-LGDGSKVLMLVHASPCEEDVGETICSLSFAKRARGIESN 421 (630)
Q Consensus 362 ~~~~~hiPYRdSKLT~LLqds-LgGnskT~mI~~VSP~~~~~~ETlsTLrFA~rar~I~~~ 421 (630)
+++..||||||||||+||||+ |||||+|+||+||||+..+++||++||+||+||++|+..
T Consensus 325 ~~~~~hvPYRdSKLTrlLqdsllGgnskT~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~ 385 (387)
T 2heh_A 325 GQNKAHTPFRESKLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVKELSPH 385 (387)
T ss_dssp HTTCSCCCGGGSHHHHHTGGGGSSTTEEEEEEEEECCBGGGHHHHHHHHHHHHHHCC----
T ss_pred hcCCCCCCccccHHHHHHhhhccCCCCeEEEEEEeCCccchHHHHHHHHHHHHHhccCcCC
Confidence 999999999999999999999 699999999999999999999999999999999999864
No 21
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=100.00 E-value=1.2e-88 Score=723.10 Aligned_cols=317 Identities=39% Similarity=0.586 Sum_probs=263.7
Q ss_pred CCCEEEEEEeCCCCcccC-CCccccEEecCCEEEEEeCCceEEEEeceeeCCCCChhhHHHhh-HHHHHHhhcCcceeEE
Q 006826 91 KGCIRVFCRVRSFLVTGR-RVIHEPVLTELEKVVVRSGGSKKEFGFDKVFNQAASQEDVFVEV-EPILRSALDGHNVCVL 168 (630)
Q Consensus 91 kG~IrV~~RvRP~~~~e~-~~~~~~v~~~~~~v~v~~~~~~~~F~FD~VF~~~atQ~eVf~~v-~plV~svl~GyN~~If 168 (630)
.++|||+|||||+...|. .+...++.++++...+.. +..+.|.||+||+++++|++||+.+ .|+|+++++|||+|||
T Consensus 10 ~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~-~~~~~f~FD~Vf~~~~~Q~~vy~~~~~plv~~~l~G~n~tif 88 (344)
T 4a14_A 10 EAPVRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTL-GRDRHFGFHVVLAEDAGQEAVYQACVQPLLEAFFEGFNATVF 88 (344)
T ss_dssp CCCCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEE-TTTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCEEEE
T ss_pred ccceEEEEEecccchHHHhccCeeEEEEcCCCceEEe-cccceEEEEEEEecCcchhHHHHHHHHHHHHHHHhhcCeeEE
Confidence 689999999999998663 344556666543322322 3457899999999999999999985 9999999999999999
Q ss_pred ecccCCCCcceeecCC------CCCCCchhHHHHHHHHHHhcCCCceEEEEEeEEEEecceeeecCCCCCccchhhhhcc
Q 006826 169 AYGQTGTGKTFTMDGT------SDQPGIVPRALEELFRQAALDNSSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAATR 242 (630)
Q Consensus 169 aYGqTGSGKTyTM~G~------~~~~GIIpRal~~LF~~~~~~~~~~~~v~vS~lEIYnE~I~DLL~~~~~~~~~~~~~~ 242 (630)
|||||||||||||+|+ .+++|||||++++||+.+.....+.|.|+|||+|||||+|+|||++... .
T Consensus 89 AYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~--------~ 160 (344)
T 4a14_A 89 AYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLLEVGTA--------S 160 (344)
T ss_dssp EESSTTSSHHHHHCC--------CCCCHHHHHHHHHHHHHHHCTTSEEEEEEEEEEEETTEEEETTSSCCC--------G
T ss_pred EecccCCCceEeecccchhhhhhcccCCchHHHHHHHHhcccccceeeEEEEehhhhhHHHHHHHHHhccc--------c
Confidence 9999999999999997 4789999999999999998888899999999999999999999986543 2
Q ss_pred cCeeEEeCCCCCEEEcCcEEEEcCChHHHHHHHHhhhhcccccccCCCCCCCCcEEEEEEEEEEecCC-------CCCce
Q 006826 243 CNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDA-------LEAKT 315 (630)
Q Consensus 243 ~~L~i~ed~~g~v~v~glt~v~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~I~v~~~~~~-------~~~~~ 315 (630)
..+.|+++++++++|.|++++.|.+++|++.+|..|.++|++++|.||+.|||||+||+|+|.+.+.. ..+..
T Consensus 161 ~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~ 240 (344)
T 4a14_A 161 RDIQLREDERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPGQL 240 (344)
T ss_dssp GGCEEEECTTSCEEEESCCCEECCSHHHHHHHHHHHHHHHHC------CCGGGSEEEEEEEEEEEC------------CE
T ss_pred ccceeeeccCCCEEEEeeeeccccCHHHHHHHHHhcchhcccCcchhhhcccccceEEEEEeeeCCCCcccCCCccccce
Confidence 36899999999999999999999999999999999999999999999999999999999999876432 12445
Q ss_pred EEeEeEEEecCCCccccccCCCcchhhhhhhhhHhHHHHHHHHHHHHhC---CCCccCCCCchhhhhhcccCCCceeeeE
Q 006826 316 EVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRK---RGHVPYRNSKLTQILRDSLGDGSKVLML 392 (630)
Q Consensus 316 ~~skL~lVDLAGSEr~~kt~a~g~rl~E~~~INkSLsaLg~VI~aL~~~---~~hiPYRdSKLT~LLqdsLgGnskT~mI 392 (630)
..|+|+|||||||||+.++++.|++++|+.+||+||++||+||.||+++ ..||||||||||+||||+|||||+|+||
T Consensus 241 ~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI 320 (344)
T 4a14_A 241 LVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSKITRILKDSLGGNAKTVMI 320 (344)
T ss_dssp EEEEEEEEECCCCCCC--------------CCCSHHHHHHHHHHHHTCTTTTTSCCCGGGCHHHHHTTTSSSTTSEEEEE
T ss_pred eeeeeeEEecccchhhcccCCchhhhhhheeechhHHhhhhHHHhcCCccccCCCCCcchhhHHHHhHhhcCCCcceEEE
Confidence 6799999999999999999999999999999999999999999999763 4699999999999999999999999999
Q ss_pred EecCCCCCcHHHhHHHHHHHHHhh
Q 006826 393 VHASPCEEDVGETICSLSFAKRAR 416 (630)
Q Consensus 393 ~~VSP~~~~~~ETlsTLrFA~rar 416 (630)
+||||+..+++||++||+||+|||
T Consensus 321 ~~vsP~~~~~~ETl~TL~fA~rAk 344 (344)
T 4a14_A 321 ACVSPSSSDFDETLNTLNYASRAQ 344 (344)
T ss_dssp EEECCBGGGHHHHHHHHHHHHHTC
T ss_pred EEeCCCccchhHHhhhhhhhhhcC
Confidence 999999999999999999999996
No 22
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=8.9e-89 Score=726.81 Aligned_cols=321 Identities=34% Similarity=0.491 Sum_probs=258.7
Q ss_pred hcCCCCEEEEEEeCCCCcccCCCccccEEec--CCEEEEEeC-----------CceEEEEeceeeCCCCChhhHHHhh-H
Q 006826 88 LDIKGCIRVFCRVRSFLVTGRRVIHEPVLTE--LEKVVVRSG-----------GSKKEFGFDKVFNQAASQEDVFVEV-E 153 (630)
Q Consensus 88 ~elkG~IrV~~RvRP~~~~e~~~~~~~v~~~--~~~v~v~~~-----------~~~~~F~FD~VF~~~atQ~eVf~~v-~ 153 (630)
.+.+|+|||||||||+...+.. .+... ...+.+... ...+.|.||+||+ +++|++||+++ +
T Consensus 20 ~~~~~~i~V~vRvRP~~~~e~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~-~~sQ~~Vy~~~~~ 94 (359)
T 3nwn_A 20 MGTRKKVHAFVRVKPTDDFAHE----MIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETVAK 94 (359)
T ss_dssp ----CCEEEEEEECCCSSCCTT----TEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHHTH
T ss_pred CCCCCCEEEEEEcCCCCccccc----ceeecCCCcEEEEecCCccccccccCCcCceEeecCccCC-CCCHHHHHHHHHH
Confidence 3568999999999998765432 23222 334544421 2347899999997 58999999997 9
Q ss_pred HHHHHhhcCcceeEEecccCCCCcceeecCCCC---CCCchhHHHHHHHHHHhcCCCceEEEEEeEEEEecceeeecCCC
Q 006826 154 PILRSALDGHNVCVLAYGQTGTGKTFTMDGTSD---QPGIVPRALEELFRQAALDNSSSVTFSMSMLEVYMGSVRDLLAP 230 (630)
Q Consensus 154 plV~svl~GyN~~IfaYGqTGSGKTyTM~G~~~---~~GIIpRal~~LF~~~~~~~~~~~~v~vS~lEIYnE~I~DLL~~ 230 (630)
|+|+++|+|||+||||||||||||||||+|+.. ++|||||++++||+.+.....+.|.|+|||+|||||+|+|||++
T Consensus 95 plv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~ 174 (359)
T 3nwn_A 95 DVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLLST 174 (359)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTCTTSCEEEEEEEEEEETTEEEETTSS
T ss_pred HHHHHHhCCCCEEEEEeCCCCCCccEEeCCccCCccchhhHHHHHHHHHHHhhcCCCCcEEEEEEEEEEecccccccccc
Confidence 999999999999999999999999999999754 58999999999999998888999999999999999999999987
Q ss_pred CCccchhhhhcccCeeEEeCCCCCEEEcCcEEEEcCChHHHHHHHHhhhhcccccccCCCCCCCCcEEEEEEEEEEecCC
Q 006826 231 KPVFKAYEAATRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDA 310 (630)
Q Consensus 231 ~~~~~~~~~~~~~~L~i~ed~~g~v~v~glt~v~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~I~v~~~~~~ 310 (630)
.+... .....+.+++++. +++|.|++++.|.+++|++.++..|.++|++++|.||..|||||+||+|+|......
T Consensus 175 ~~~~~----~~~~~~~~~~~~~-g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~ 249 (359)
T 3nwn_A 175 LPYVG----PSVTPMTIVENPQ-GVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRT 249 (359)
T ss_dssp STTSC----TTTSCCEEEEETT-EEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC---
T ss_pred ccccc----cccccceEEecCC-ceEEeccEEEEecCHHHHHHHHHhhhhhcccccccCccccCcceEEEEEEEEeeccc
Confidence 65421 1233567777765 589999999999999999999999999999999999999999999999999875433
Q ss_pred C-CCceEEeEeEEEecCCCccccccCCCcchhhhhhhhhHhHHHHHHHHHHHHh-CCCCccCCCCchhhhhhcccCCCce
Q 006826 311 L-EAKTEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRR-KRGHVPYRNSKLTQILRDSLGDGSK 388 (630)
Q Consensus 311 ~-~~~~~~skL~lVDLAGSEr~~kt~a~g~rl~E~~~INkSLsaLg~VI~aL~~-~~~hiPYRdSKLT~LLqdsLgGnsk 388 (630)
. +.....|+|+|||||||||+.++++.|++++|+.+||+||++||+||.||++ +..||||||||||+||||+|||||+
T Consensus 250 ~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~~Lg~vI~aL~~~~~~hVPYRdSkLT~lLqdsLgGnsk 329 (359)
T 3nwn_A 250 LSEEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCN 329 (359)
T ss_dssp ----CCEEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHHHHSSSSE
T ss_pred ccCcccccccceeeeccccccccccCCchhHHHhhhhhcccHHHHHHHHHHHHhcCCCcCCcccCHHHHHHHHhcCCCcc
Confidence 2 2445679999999999999999999999999999999999999999999986 4579999999999999999999999
Q ss_pred eeeEEecCCCCCcHHHhHHHHHHHHHhhcc
Q 006826 389 VLMLVHASPCEEDVGETICSLSFAKRARGI 418 (630)
Q Consensus 389 T~mI~~VSP~~~~~~ETlsTLrFA~rar~I 418 (630)
|+||+||||+..+++||++||+||+|||+|
T Consensus 330 t~mI~~isP~~~~~~ETlsTL~fA~rak~I 359 (359)
T 3nwn_A 330 MVLVTNIYGEAAQLEETLSSLRFASRMKLV 359 (359)
T ss_dssp EEEEEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred EEEEEEeCCchhhHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999987
No 23
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=100.00 E-value=1.4e-88 Score=734.17 Aligned_cols=343 Identities=30% Similarity=0.405 Sum_probs=279.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCEEEEEEeCCCCcccCC-CccccEEecC-CEEEEEeCC---------ceE
Q 006826 63 EGEIVELRLKKRRLDEKRREALNKILDIKGCIRVFCRVRSFLVTGRR-VIHEPVLTEL-EKVVVRSGG---------SKK 131 (630)
Q Consensus 63 ~~~~~~l~~~~~~~~~~Rr~l~n~~~elkG~IrV~~RvRP~~~~e~~-~~~~~v~~~~-~~v~v~~~~---------~~~ 131 (630)
.-++..|-.+++.+...|+..||+..+ .++|+|+|||||++..|.. +...++.+.+ +.+.+.... ..+
T Consensus 43 ~~~~~~~i~~~r~~~~~~~~~~~~~~~-~~~I~V~vRvRPl~~~E~~~~~~~~v~~~~~~~v~v~~~~~~~~~~~~~~~~ 121 (410)
T 1v8k_A 43 NWEFARMIKEFRVTMECSPLTVTDPIE-EHRICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQ 121 (410)
T ss_dssp CHHHHHHHHHHHHHHTCCTTTTTCTTS-CCCEEEEEEECCCCHHHHHTTCCBCEECCSSSEEEEEEEEECTTCCEEEEEE
T ss_pred cHHHHHHHHHHHHhhccCCCccCCcCC-CCCeEEEEEeCCCChhHhhcCCccEEEECCCCEEEEecCcccccccccccce
Confidence 345666767788888888888988877 8999999999999986643 3345566543 445544221 237
Q ss_pred EEEeceeeCCCCChhhHHHhh-HHHHHHhhcCcceeEEecccCCCCcceeecCCC------CCCCchhHHHHHHHHHHhc
Q 006826 132 EFGFDKVFNQAASQEDVFVEV-EPILRSALDGHNVCVLAYGQTGTGKTFTMDGTS------DQPGIVPRALEELFRQAAL 204 (630)
Q Consensus 132 ~F~FD~VF~~~atQ~eVf~~v-~plV~svl~GyN~~IfaYGqTGSGKTyTM~G~~------~~~GIIpRal~~LF~~~~~ 204 (630)
.|.||+||+++++|++||+.+ .|+|+++|+|||+||||||||||||||||+|+. .++|||||++++||..+..
T Consensus 122 ~F~FD~VF~~~~tQ~~Vy~~~~~plV~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipra~~~lF~~~~~ 201 (410)
T 1v8k_A 122 AFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQ 201 (410)
T ss_dssp EEECSEEECTTCCHHHHHHHTTHHHHHHHHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHHHHHHTS
T ss_pred EEeeeEEEecCCChhhhhHHHHHHHHHHHhcCCceeEEeecCCCCCCCeEeecCCCCCCccccCcchhhhHHHHHHHHhh
Confidence 899999999999999999986 999999999999999999999999999999963 4689999999999998764
Q ss_pred C--CCceEEEEEeEEEEecceeeecCCCCCccchhhhhcccCeeEEeCCCCCEEEcCcEEEEcCChHHHHHHHHhhhhcc
Q 006826 205 D--NSSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAATRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVR 282 (630)
Q Consensus 205 ~--~~~~~~v~vS~lEIYnE~I~DLL~~~~~~~~~~~~~~~~L~i~ed~~g~v~v~glt~v~V~s~~e~~~ll~~g~~~R 282 (630)
. ..+.|.|+|||+|||||+|+|||++.. .+.|++|+.++++|.||+++.|.+++|++.+|..|.++|
T Consensus 202 ~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~-----------~l~i~ed~~~~v~V~gl~e~~V~s~~e~~~ll~~G~~~R 270 (410)
T 1v8k_A 202 PRYRNLNLEVYVTFFEIYNGKVFDLLNKKA-----------KLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACR 270 (410)
T ss_dssp HHHHTTCCEEEEEEEEEETTEEEETTTTTE-----------EEEEEECSSCCEEEETCCCEEESSHHHHHHHHHHHHHTC
T ss_pred hcccCccEEEEEEEEEeeCCEEEECCCCCC-----------CceEEECCCCCeEecCCEEEEeCCHHHHHHHHHHHHhhC
Confidence 3 368899999999999999999998643 489999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCcEEEEEEEEEEecCCCCCceEEeEeEEEecCCCccccccC-CCcchhhhhhhhhHhHHHHHHHHHHH
Q 006826 283 STSWTNVNEASSRSHCLMRITIFRHGDALEAKTEVSKLWMVDLGGSERVLKTG-ATGQTLDEGRAINLSLSALADVIAAL 361 (630)
Q Consensus 283 ~~~~T~~N~~SSRSH~If~I~v~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~-a~g~rl~E~~~INkSLsaLg~VI~aL 361 (630)
++++|.||..|||||+||+|.|.+.+ ...|+|+|||||||||+.+++ +.|++++|+.+||+||++||+||.||
T Consensus 271 ~~~~T~~N~~SSRSH~Ifti~v~~~~------~~~skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL 344 (410)
T 1v8k_A 271 TSGQTFANSNSSRSHACFQILLRTKG------RLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRAL 344 (410)
T ss_dssp C--------CCCSSEEEEEEEEESSS------SEEEEEEEEECCCCCC------------TTHHHHHHHHHHHHHHHHHH
T ss_pred CcccccCCCCCCCceEEEEEEEEeCC------cceeEEEEEECCCccccccccccccchhHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999997542 357999999999999998886 56789999999999999999999999
Q ss_pred HhCCCCccCCCCchhhhhhcc-cCCCceeeeEEecCCCCCcHHHhHHHHHHHHHhhccccccc
Q 006826 362 RRKRGHVPYRNSKLTQILRDS-LGDGSKVLMLVHASPCEEDVGETICSLSFAKRARGIESNRE 423 (630)
Q Consensus 362 ~~~~~hiPYRdSKLT~LLqds-LgGnskT~mI~~VSP~~~~~~ETlsTLrFA~rar~I~~~~~ 423 (630)
+.+..||||||||||+||||| |||||+|+||+||||+..+++||++||+||+||+.|...+.
T Consensus 345 ~~~~~hIPYRdSKLTrLLqdsllGgnskT~mIa~iSP~~~~~~ETlsTLrfA~rak~i~~~~~ 407 (410)
T 1v8k_A 345 GQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELSHHHH 407 (410)
T ss_dssp TC------CCCCHHHHHTTHHHHSSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTTC----
T ss_pred hcCCCCCCcccchhHHHHhhcccCCCceEEEEEEeCCccccHHHHHHHHHHHHHhccCCCCCC
Confidence 999999999999999999999 69999999999999999999999999999999999986654
No 24
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=100.00 E-value=4.7e-88 Score=721.00 Aligned_cols=323 Identities=34% Similarity=0.485 Sum_probs=261.6
Q ss_pred hhhcCCCCEEEEEEeCCCCcccCCCccccEEec--CCEEEEEeC-----------CceEEEEeceeeCCCCChhhHHHhh
Q 006826 86 KILDIKGCIRVFCRVRSFLVTGRRVIHEPVLTE--LEKVVVRSG-----------GSKKEFGFDKVFNQAASQEDVFVEV 152 (630)
Q Consensus 86 ~~~elkG~IrV~~RvRP~~~~e~~~~~~~v~~~--~~~v~v~~~-----------~~~~~F~FD~VF~~~atQ~eVf~~v 152 (630)
.-.++||||||||||||+...+ ..++.++ ...+.+... ...+.|.||+||+ +++|++||+.+
T Consensus 17 ~~~~~~g~IrV~vRvRP~~~~~----~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~F~fD~Vf~-~~sQ~~Vy~~~ 91 (358)
T 2nr8_A 17 RGSGTRKKVHAFVRVKPTDDFA----HEMIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETV 91 (358)
T ss_dssp ------CCEEEEEEECCCSSCC----TTTEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHH
T ss_pred CCCCCCCCeEEEEEcCCCCCCc----cceeEECCCCCEEEEecCCccccccccCCCcceEEECCeecC-CcCHHHHHHHH
Confidence 3578999999999999986533 2334443 345555422 2247899999995 88999999997
Q ss_pred -HHHHHHhhcCcceeEEecccCCCCcceeecCCCCC---CCchhHHHHHHHHHHhcCCCceEEEEEeEEEEecceeeecC
Q 006826 153 -EPILRSALDGHNVCVLAYGQTGTGKTFTMDGTSDQ---PGIVPRALEELFRQAALDNSSSVTFSMSMLEVYMGSVRDLL 228 (630)
Q Consensus 153 -~plV~svl~GyN~~IfaYGqTGSGKTyTM~G~~~~---~GIIpRal~~LF~~~~~~~~~~~~v~vS~lEIYnE~I~DLL 228 (630)
.|+|+++++|||+||||||||||||||||+|+.++ +|||||++++||+.++....+.|.|+|||+|||||+|+|||
T Consensus 92 ~~~lv~~~l~G~N~tIfAYGqTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL 171 (358)
T 2nr8_A 92 AKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLL 171 (358)
T ss_dssp THHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTCTTSCEEEEEEEEEEETTEEEETT
T ss_pred HHHHHHHHhCCCceEEEEECCCCCCCceEecccccccccCCcHHHHHHHHHHHHhhcCCceEEEEEEEEEEeCCeeeECc
Confidence 99999999999999999999999999999998764 89999999999999988888999999999999999999999
Q ss_pred CCCCccchhhhhcccCeeEEeCCCCCEEEcCcEEEEcCChHHHHHHHHhhhhcccccccCCCCCCCCcEEEEEEEEEEec
Q 006826 229 APKPVFKAYEAATRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHG 308 (630)
Q Consensus 229 ~~~~~~~~~~~~~~~~L~i~ed~~g~v~v~glt~v~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~I~v~~~~ 308 (630)
++.+... .....+.|++++ .+++|.|++++.|.+.+|++.+|..|.++|++++|.||+.|||||+||+|+|.+..
T Consensus 172 ~~~~~~~----~~~~~l~i~e~~-~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~ 246 (358)
T 2nr8_A 172 STLPYVG----PSVTPMTIVENP-QGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHS 246 (358)
T ss_dssp SSSTTSC----TTTSCCEEEEET-TEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC-
T ss_pred CCccccC----ccCCceEEEECC-CceEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcCeEEEEEEEEEEe
Confidence 8754311 123468999998 56999999999999999999999999999999999999999999999999998764
Q ss_pred CCC-CCceEEeEeEEEecCCCccccccCCCcchhhhhhhhhHhHHHHHHHHHHHHhC-CCCccCCCCchhhhhhcccCCC
Q 006826 309 DAL-EAKTEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRK-RGHVPYRNSKLTQILRDSLGDG 386 (630)
Q Consensus 309 ~~~-~~~~~~skL~lVDLAGSEr~~kt~a~g~rl~E~~~INkSLsaLg~VI~aL~~~-~~hiPYRdSKLT~LLqdsLgGn 386 (630)
... ......|+|+|||||||||+.++++.|++++|+.+||+||++||+||.||+++ ..||||||||||+||||+||||
T Consensus 247 ~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hiPyRdSkLT~LLqdsLgGn 326 (358)
T 2nr8_A 247 RTLSEEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGN 326 (358)
T ss_dssp ------CCEEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHHHHSSS
T ss_pred ccCCCCCEEEEEEEEEECCCCCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCC
Confidence 322 24456799999999999999999999999999999999999999999999874 4799999999999999999999
Q ss_pred ceeeeEEecCCCCCcHHHhHHHHHHHHHhhcc
Q 006826 387 SKVLMLVHASPCEEDVGETICSLSFAKRARGI 418 (630)
Q Consensus 387 skT~mI~~VSP~~~~~~ETlsTLrFA~rar~I 418 (630)
|+|+||+||||+..+++||++||+||+|||.|
T Consensus 327 skt~mIa~isP~~~~~~ETlsTLrfA~Rak~I 358 (358)
T 2nr8_A 327 CNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 358 (358)
T ss_dssp SEEEEEEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred CeEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999986
No 25
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=100.00 E-value=7.6e-88 Score=719.06 Aligned_cols=319 Identities=38% Similarity=0.589 Sum_probs=259.1
Q ss_pred CCEEEEEEeCCCCcccCC-CccccEEecCCEEEEEeC----------CceEEEEeceee--------CCCCChhhHHHhh
Q 006826 92 GCIRVFCRVRSFLVTGRR-VIHEPVLTELEKVVVRSG----------GSKKEFGFDKVF--------NQAASQEDVFVEV 152 (630)
Q Consensus 92 G~IrV~~RvRP~~~~e~~-~~~~~v~~~~~~v~v~~~----------~~~~~F~FD~VF--------~~~atQ~eVf~~v 152 (630)
.+|+|+|||||++..|.. +..+++.++++.+.+... +..+.|.||+|| ++.++|++||+.+
T Consensus 1 S~VkV~vRvRPl~~~E~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~k~F~FD~vF~~~d~~~~~~~a~Q~~vy~~~ 80 (354)
T 3gbj_A 1 SKVKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFWSMDESVKEKYAGQDIVFKCL 80 (354)
T ss_dssp -CEEEEEEECCCCHHHHHHTCCBCEEEETTEEEECCC-----------CCEEEECSEEEECSCTTCTTTBCCHHHHHHHH
T ss_pred CCcEEEEECCCCChhhhccCCceEEEeCCCeEEEeCCccccccccccCCceEEEeeEEeccCccccccccccHHHHHHHh
Confidence 379999999999986643 345667777777666421 234889999999 4568999999987
Q ss_pred -HHHHHHhhcCcceeEEecccCCCCcceeecCCCCCCCchhHHHHHHHHHHhc--CCCceEEEEEeEEEEecceeeecCC
Q 006826 153 -EPILRSALDGHNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQAAL--DNSSSVTFSMSMLEVYMGSVRDLLA 229 (630)
Q Consensus 153 -~plV~svl~GyN~~IfaYGqTGSGKTyTM~G~~~~~GIIpRal~~LF~~~~~--~~~~~~~v~vS~lEIYnE~I~DLL~ 229 (630)
.|+|+++++|||+||||||||||||||||+|+.+++|||||++++||+.+.. ...+.|.|.|||+|||||+|+|||+
T Consensus 81 ~~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~ 160 (354)
T 3gbj_A 81 GENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLD 160 (354)
T ss_dssp HHHHHHHHHTTCCEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHCBTTEEEEEEEEEEEEETTEEEETTC
T ss_pred hHHHHHHHhCCceeEEEeeCCCCCCCceEEecCCCCCchhhHHHHHHHHHHHhhcccccceeeeceeEEEecCeeeEccC
Confidence 9999999999999999999999999999999999999999999999997753 4478999999999999999999998
Q ss_pred CCCccchhhhhcccCeeEEeCCCCCEEEcCcEEEEcCChHHHHHHHHhhhhcccccccCCCCCCCCcEEEEEEEEEEecC
Q 006826 230 PKPVFKAYEAATRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGD 309 (630)
Q Consensus 230 ~~~~~~~~~~~~~~~L~i~ed~~g~v~v~glt~v~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~I~v~~~~~ 309 (630)
+... ...+.+++++.++++|.|++++.|.+++|++.+|..|.++|++++|.||+.|||||+||+|+|.+...
T Consensus 161 ~~~~--------~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~ 232 (354)
T 3gbj_A 161 PKGS--------RQTLKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLY 232 (354)
T ss_dssp --------------CBCBC------CCBTTCCCEEECSHHHHHHHHHHHHHCC----------CTTSEEEEEEEEEEEEE
T ss_pred CCCC--------CcceEEEEcCCCCEEEEeeEEEecCCHHHHHHHHHHHHhcCCeeecCCCCCCCcccEEEEEEEEEEec
Confidence 7542 23689999999999999999999999999999999999999999999999999999999999987522
Q ss_pred C---CCCceEEeEeEEEecCCCccccccCCCcchhhhhhhhhHhHHHHHHHHHHHHh------CCCCccCCCCchhhhhh
Q 006826 310 A---LEAKTEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRR------KRGHVPYRNSKLTQILR 380 (630)
Q Consensus 310 ~---~~~~~~~skL~lVDLAGSEr~~kt~a~g~rl~E~~~INkSLsaLg~VI~aL~~------~~~hiPYRdSKLT~LLq 380 (630)
. .......|+|+|||||||||+.++++.|++++|+.+||+||++||+||.||++ +..||||||||||+|||
T Consensus 233 ~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~~~~hvPyRdSkLT~lLq 312 (354)
T 3gbj_A 233 DVKSGTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLK 312 (354)
T ss_dssp CTTSCEEEEEEEEEEEEECCCCCCCCCCC------CHHHHHHHHHHHHHHHHHHHHHC------CCCCCGGGSHHHHHTH
T ss_pred ccCCCCCCeeEEEEEEEECCCCCchhhcCCccccchhHHHhhHHHHHHHHHHHHHHhhhcccCCCCcccccccHHHHHHH
Confidence 1 11345679999999999999999999999999999999999999999999985 45799999999999999
Q ss_pred cccCCCceeeeEEecCCCCCcHHHhHHHHHHHHHhhcc
Q 006826 381 DSLGDGSKVLMLVHASPCEEDVGETICSLSFAKRARGI 418 (630)
Q Consensus 381 dsLgGnskT~mI~~VSP~~~~~~ETlsTLrFA~rar~I 418 (630)
|+|||||+|+||+||||+..+++||++||+||.||+.-
T Consensus 313 dsLgGnskt~mIa~vsP~~~~~~ETlsTLr~a~~~~~~ 350 (354)
T 3gbj_A 313 DSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAKHH 350 (354)
T ss_dssp HHHSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHC--
T ss_pred HHhCCCCeEEEEEEeCCCcchHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999853
No 26
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=100.00 E-value=7.2e-87 Score=712.35 Aligned_cols=318 Identities=28% Similarity=0.430 Sum_probs=271.7
Q ss_pred CEEEEEEeCCCCcccCC-CccccEEec-CCEEEEEeCC---------ceEEEEeceeeCCCCChhhHHHhh-HHHHHHhh
Q 006826 93 CIRVFCRVRSFLVTGRR-VIHEPVLTE-LEKVVVRSGG---------SKKEFGFDKVFNQAASQEDVFVEV-EPILRSAL 160 (630)
Q Consensus 93 ~IrV~~RvRP~~~~e~~-~~~~~v~~~-~~~v~v~~~~---------~~~~F~FD~VF~~~atQ~eVf~~v-~plV~svl 160 (630)
+|||+|||||+...|.. +...++.+. ...+.+.... ..+.|.||+||+++++|++||+++ .|+|++++
T Consensus 1 ~IrV~vRvRP~~~~E~~~~~~~~v~~~~~~~i~i~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~~ 80 (360)
T 1ry6_A 1 MIKVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDTVDNFTVYENTIKPLIIDLY 80 (360)
T ss_dssp CEEEEEEECCCCHHHHHTTCCBCEEEEETTEEEEEEEEEETTTEEEEEEEEEECSEEECTTCCHHHHHHHHTHHHHHHHH
T ss_pred CeEEEEECCCCChHHhccCCceEEEECCCCEEEEeCCccccccccccccceEEeeeEecCCCCHHHHHHHHhhhhhhhhc
Confidence 69999999999986643 334455543 4556654321 247899999999999999999985 99999999
Q ss_pred c-CcceeEEecccCCCCcceeecCCC-----CCCCchhHHHHHHHHHHhc-CCCceEEEEEeEEEEecceeeecCCCCCc
Q 006826 161 D-GHNVCVLAYGQTGTGKTFTMDGTS-----DQPGIVPRALEELFRQAAL-DNSSSVTFSMSMLEVYMGSVRDLLAPKPV 233 (630)
Q Consensus 161 ~-GyN~~IfaYGqTGSGKTyTM~G~~-----~~~GIIpRal~~LF~~~~~-~~~~~~~v~vS~lEIYnE~I~DLL~~~~~ 233 (630)
+ |||+||||||||||||||||+|+. +++|||||++++||..+.. ...+.|.|+|||+|||||+|+|||.+..
T Consensus 81 ~~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~- 159 (360)
T 1ry6_A 81 ENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKRK- 159 (360)
T ss_dssp HHCCEEEEEEECCTTSSHHHHHHBSSSTTTSSCBCHHHHHHHHHHHHHHHHCSSSCEEEEEEEEEEETTEEEESCCC---
T ss_pred cCCceeEEEeeCCCCCCCCEEEecCCCCCCccCCCcHHHHHHHHHHHHHhhccCCceEEEEEEEEeeCCeeEEcccCCc-
Confidence 6 999999999999999999999974 6899999999999998764 3477899999999999999999998653
Q ss_pred cchhhhhcccCeeEEeCCCCCEEEcCcEEEEcCChHHHHHHHHhhhhcccccccCCCCCCCCcEEEEEEEEEEecCCCCC
Q 006826 234 FKAYEAATRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDALEA 313 (630)
Q Consensus 234 ~~~~~~~~~~~L~i~ed~~g~v~v~glt~v~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~I~v~~~~~~~~~ 313 (630)
.+.+++++.++++|.|++++.|.+++|++.+|..|.++|++++|.||+.|||||+||+|+|.+.+ .
T Consensus 160 ----------~~~~~e~~~~~~~v~gl~~~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~----~ 225 (360)
T 1ry6_A 160 ----------MVAALENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDIN----K 225 (360)
T ss_dssp -------------------CCBCGGGSCCEEECSHHHHHHHHHHHHHHHHHCTTCCTTGGGGSEEEEEEEEEETT----T
T ss_pred ----------cceeeEcCCCCEEEcCcEEEEeCCHHHHHHHHHHHhhhhhcccccccCCCccceEEEEEEEEecc----C
Confidence 35678899999999999999999999999999999999999999999999999999999998753 3
Q ss_pred ceEEeEeEEEecCCCccccccCCCc-chhhhhhhhhHhHHHHHHHHHHHHhCCCCccCCCCchhhhhhcccCCCceeeeE
Q 006826 314 KTEVSKLWMVDLGGSERVLKTGATG-QTLDEGRAINLSLSALADVIAALRRKRGHVPYRNSKLTQILRDSLGDGSKVLML 392 (630)
Q Consensus 314 ~~~~skL~lVDLAGSEr~~kt~a~g-~rl~E~~~INkSLsaLg~VI~aL~~~~~hiPYRdSKLT~LLqdsLgGnskT~mI 392 (630)
....|+|+|||||||||+.++++.| .+++|+.+||+||++||+||.||..+..||||||||||+||||+|||||+|+||
T Consensus 226 ~~~~skL~lVDLAGSEr~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI 305 (360)
T 1ry6_A 226 NTSLGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDKNHIPFRDSELTKVLRDIFVGKSKSIMI 305 (360)
T ss_dssp TEEEEEEEEEECCCTTGGGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHTTSTTSCCGGGCHHHHHTGGGGSSSCEEEEE
T ss_pred CcceeEEEEEECCCCccccccccccccchHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCHHHHHHHHHhCCCCeEEEE
Confidence 4567999999999999999999887 578999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCcHHHhHHHHHHHHHhhccccccccc
Q 006826 393 VHASPCEEDVGETICSLSFAKRARGIESNRELS 425 (630)
Q Consensus 393 ~~VSP~~~~~~ETlsTLrFA~rar~I~~~~~~~ 425 (630)
+||||+..+++||++||+||+||++|++.+..+
T Consensus 306 a~isP~~~~~~ETlsTLrfA~rak~i~n~~~~~ 338 (360)
T 1ry6_A 306 ANISPTISCCEQTLNTLRYSSRVKNKGNSKLEG 338 (360)
T ss_dssp EEECCBGGGHHHHHHHHHHHHHHCC--------
T ss_pred EEeCCCcccHHHHHHHHHHHHHHhhcccCcccC
Confidence 999999999999999999999999999966544
No 27
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=100.00 E-value=4.6e-85 Score=694.60 Aligned_cols=307 Identities=30% Similarity=0.459 Sum_probs=244.4
Q ss_pred cCCCCEEEEEEeCCCCcccCCCccccEEecC----CEEEEEeCCceEEEEeceeeCCCCChhhHHHhh-HHHHHHhhcCc
Q 006826 89 DIKGCIRVFCRVRSFLVTGRRVIHEPVLTEL----EKVVVRSGGSKKEFGFDKVFNQAASQEDVFVEV-EPILRSALDGH 163 (630)
Q Consensus 89 elkG~IrV~~RvRP~~~~e~~~~~~~v~~~~----~~v~v~~~~~~~~F~FD~VF~~~atQ~eVf~~v-~plV~svl~Gy 163 (630)
+-.++|||+|||||+...+..+...++.+.+ ..+.+ ..+.|.||+||+++++|++||+.+ .|+|+++++||
T Consensus 19 ~~~~~VrV~vRvRP~~~~e~~~~~~~v~~~~~~~~~~~~~----~~~~F~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G~ 94 (344)
T 3dc4_A 19 AKLSAVRIAVREAPYRQFLGRREPSVVQFPPWSDGKSLIV----DQNEFHFDHAFPATISQDEMYQALILPLVDKLLEGF 94 (344)
T ss_dssp CCCSEEEEEEEECCCC-------CCSEECCSSSCSSEEEE----TTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHHTC
T ss_pred CCCCCeEEEEECCCCCcccccCCceEEEecCCCCCceEEe----cCcEEEcceEECCCCCHHHHHHhhccchhhHhhCCC
Confidence 4578999999999998876555666666543 23333 247899999999999999999986 99999999999
Q ss_pred ceeEEecccCCCCcceeecCCC------CCCCchhHHHHHHHHHHhcCC---CceEEEEEeEEEEecceeeecCCCCCcc
Q 006826 164 NVCVLAYGQTGTGKTFTMDGTS------DQPGIVPRALEELFRQAALDN---SSSVTFSMSMLEVYMGSVRDLLAPKPVF 234 (630)
Q Consensus 164 N~~IfaYGqTGSGKTyTM~G~~------~~~GIIpRal~~LF~~~~~~~---~~~~~v~vS~lEIYnE~I~DLL~~~~~~ 234 (630)
|+||||||||||||||||+|++ +++|||||++++||+.+.... .+.|.|+|||+|||||+|+|||++.+..
T Consensus 95 N~tifAYGQTGSGKTyTM~g~~~~~~~~~~~GIipra~~~LF~~i~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~ 174 (344)
T 3dc4_A 95 QCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTPHM 174 (344)
T ss_dssp CEEEEEESSTTSSHHHHHTCSCGGGSCGGGCCHHHHHHHHHHHHHHHSSSSCSSCCEEEEEEEEEESSCEEETTSSCTTS
T ss_pred ceEEEEecCCCCCCCeEEcCCCCCCCCcccCCcHHHHHHHHHHHHHhhhhccccceEEEEEEEEEeCCeeEEccCCCCCC
Confidence 9999999999999999999874 568999999999999876433 4679999999999999999999876531
Q ss_pred chhhhhcccCeeEEeCCCCCEEEcCcEEEEcCChHHHHHHHHhhhhcccccccCCCCCCCCcEEEEEEEEEEecCCCCCc
Q 006826 235 KAYEAATRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDALEAK 314 (630)
Q Consensus 235 ~~~~~~~~~~L~i~ed~~g~v~v~glt~v~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~I~v~~~~~~~~~~ 314 (630)
. + ....+.|++++.|.+.+|++.+|..|.++|++++|.||+.|||||+||+|+|.+.
T Consensus 175 ~-----------~-----~~~~~~~~~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~v~~~------- 231 (344)
T 3dc4_A 175 P-----------M-----VAARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSK------- 231 (344)
T ss_dssp B-----------C-----CSSTTTCSCCEECSSHHHHHHHHHHHHHTCC----------CCEEEEEEEEEECS-------
T ss_pred c-----------c-----ccccccCceecccCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEec-------
Confidence 1 0 0112358999999999999999999999999999999999999999999999642
Q ss_pred eEEeEeEEEecCCCccccccCCCcchhhhhhhhhHhHHHHHHHHHHHHhCCCCccCCCCchhhhhhcccCCCceeeeEEe
Q 006826 315 TEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKRGHVPYRNSKLTQILRDSLGDGSKVLMLVH 394 (630)
Q Consensus 315 ~~~skL~lVDLAGSEr~~kt~a~g~rl~E~~~INkSLsaLg~VI~aL~~~~~hiPYRdSKLT~LLqdsLgGnskT~mI~~ 394 (630)
...|+|+|||||||||+.++++.|++++|+.+||+||++||+||.||+.+..||||||||||+||||+|||||+|+||+|
T Consensus 232 ~~~skl~lVDLAGSEr~~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~~~hiPyRdSkLT~lLqdsLgGnskt~mIa~ 311 (344)
T 3dc4_A 232 THHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTVIPYRDSVLTTVLQASLTAQSYLTFLAC 311 (344)
T ss_dssp SCEEEEEEEECCCCCCC-------------CCSCCHHHHHHHHHHHHHTTCSSCCGGGSHHHHHTTTTSSTTCEEEEEEE
T ss_pred CcEEEEEEEECCCCccccccccccchhHHHHHHhHhHHHHHHHHHHHhccCCcCCccccHHHHHHHHHhCCCCEEEEEEE
Confidence 24699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcHHHhHHHHHHHHHhhcccccc
Q 006826 395 ASPCEEDVGETICSLSFAKRARGIESNR 422 (630)
Q Consensus 395 VSP~~~~~~ETlsTLrFA~rar~I~~~~ 422 (630)
|||+..+++||++||+||+||+.....+
T Consensus 312 isP~~~~~~ETlsTL~fA~ra~~~~~~~ 339 (344)
T 3dc4_A 312 ISPHQCDLSETLSTLRFGTSAKAAALEH 339 (344)
T ss_dssp ECCCGGGHHHHHHHHHHHHHHHHHTTTC
T ss_pred eCCchhhHHHHHHHHHHHHHHhhcCCCC
Confidence 9999999999999999999999876443
No 28
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=100.00 E-value=1.2e-81 Score=727.33 Aligned_cols=330 Identities=37% Similarity=0.560 Sum_probs=261.7
Q ss_pred HHHhhhhhcCCCCEEEEEEeC----CCCcccCCCccccEEe---------cCCEEEEEe----CCceEEEEeceeeCCCC
Q 006826 81 REALNKILDIKGCIRVFCRVR----SFLVTGRRVIHEPVLT---------ELEKVVVRS----GGSKKEFGFDKVFNQAA 143 (630)
Q Consensus 81 r~l~n~~~elkG~IrV~~RvR----P~~~~e~~~~~~~v~~---------~~~~v~v~~----~~~~~~F~FD~VF~~~a 143 (630)
+.+-.++..+.+++||||||| |.+..+..+....+.+ .++.+++.. ....+.|.||+||++++
T Consensus 363 ~~Aq~~~~~il~~~rV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fd~vf~~~~ 442 (715)
T 4h1g_A 363 AAAQTNAAALKGNIRVFCRIRNVSSSSSSSSSSSSEDIIQYEAPQDINDESKQELVITRNINNNFSNLRFLFDKIFEREQ 442 (715)
T ss_dssp HHHHHHHSSSSCSEEEEEEECCCC-------------BCEEECCC-------CEEEEEEEETTEEEEEEEECSEEECSSC
T ss_pred HHHHHHHHHHHhcCeEEEEEeccccccccccccccccceeccCCCCCCCCCCCeEEEcCCCCCCCCCeEEEeceEeCCCC
Confidence 444556888999999999999 5555444433322222 134566653 22348999999999999
Q ss_pred ChhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceeecCCCCCCCchhHHHHHHHHHHhc--CCCceEEEEEeEEEEec
Q 006826 144 SQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQAAL--DNSSSVTFSMSMLEVYM 221 (630)
Q Consensus 144 tQ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM~G~~~~~GIIpRal~~LF~~~~~--~~~~~~~v~vS~lEIYn 221 (630)
+|++||+.|.|+|+++++|||+||||||||||||||||+|+ ++|||||++++||+.+.. +.+..|.|+|||+||||
T Consensus 443 ~q~~v~~~~~~~v~~~~~G~n~~i~ayGqtgsGKT~Tm~g~--~~Giipr~~~~lf~~~~~~~~~~~~~~v~~s~~Eiyn 520 (715)
T 4h1g_A 443 SNDLVFEELSQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHP--TNGMIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYN 520 (715)
T ss_dssp CHHHHGGGTHHHHHHHHTTCCEEEEEESSTTSSHHHHHHCT--TTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEET
T ss_pred CHHHHHHHHHHHHHHHhCCceEEEEccCCCCCchhhccCCC--CCCcHHHHHHHHHHHHHHhhcCCceEEEEEEEEEEEC
Confidence 99999999999999999999999999999999999999984 679999999999998754 34678999999999999
Q ss_pred ceeeecCCCCCccchhhhhcccCeeEEe-CCCCCEEEcCcEEEEcCChHHHHHHHHhhhhcccccccCCCCCCCCcEEEE
Q 006826 222 GSVRDLLAPKPVFKAYEAATRCNLNIQT-DAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLM 300 (630)
Q Consensus 222 E~I~DLL~~~~~~~~~~~~~~~~L~i~e-d~~g~v~v~glt~v~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If 300 (630)
|+|+|||.+... ....+.+++ +..|+++|.||+++.|.+.+|++.+|..|.++|++++|.||.+|||||+||
T Consensus 521 e~i~DLl~~~~~-------~~~~~~~~~~~~~g~~~v~~l~~~~v~~~~~~~~~~~~g~~~r~~~~t~~n~~ssRSH~i~ 593 (715)
T 4h1g_A 521 EAIVDLLNPKID-------PNTKYEIKHDDIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIF 593 (715)
T ss_dssp TEEEESSSCCCC-------TTCCCCEEEETTTTEEEETTCCCEECSCHHHHHHHHHHHHCC----------CGGGSEEEE
T ss_pred CEEEECCCCCCC-------CCCcceeEEecCCCCEEEeCCEEEEcCCHHHHHHHHHHHHhccCcccccccCccccccEEE
Confidence 999999987643 112455665 556779999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCCCCceEEeEeEEEecCCCccccccCCCcchhhhhhhhhHhHHHHHHHHHHHHhC-CCCccCCCCchhhhh
Q 006826 301 RITIFRHGDALEAKTEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRK-RGHVPYRNSKLTQIL 379 (630)
Q Consensus 301 ~I~v~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~a~g~rl~E~~~INkSLsaLg~VI~aL~~~-~~hiPYRdSKLT~LL 379 (630)
+|+|.+.+... .....|+|+|||||||||+.++++.|+|++|+.+||+||++||+||.+|+.+ ..||||||||||+||
T Consensus 594 ~i~~~~~~~~~-~~~~~~~l~lvDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~al~~~~~~~vpyR~SkLT~lL 672 (715)
T 4h1g_A 594 IIDLQGYNSLT-KESSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDGSHVPYRNSKLTYLL 672 (715)
T ss_dssp EEEEEEEETTT-CCEEEEEEEEEECCCCCC---------CHHHHHHHHHHHHHHHHHHHHHHHCSCCCCCGGGCHHHHHT
T ss_pred EEEEEEEecCC-CCEeEEEEEEEeCCCcccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCCccCHHHHHH
Confidence 99998876555 5677899999999999999999999999999999999999999999999754 589999999999999
Q ss_pred hcccCCCceeeeEEecCCCCCcHHHhHHHHHHHHHhhcccc
Q 006826 380 RDSLGDGSKVLMLVHASPCEEDVGETICSLSFAKRARGIES 420 (630)
Q Consensus 380 qdsLgGnskT~mI~~VSP~~~~~~ETlsTLrFA~rar~I~~ 420 (630)
||||||||+|+||+||||+..+++||++||+||+|||+|+.
T Consensus 673 ~~slggn~~t~~i~~isp~~~~~~et~~tL~fa~r~~~i~~ 713 (715)
T 4h1g_A 673 KHSLGGNSKTLMFVNISPLTKDLNETINSLRFATKVNNTRI 713 (715)
T ss_dssp GGGTSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHCC---
T ss_pred HhhcCCCceEEEEEEECCChhhHHHHHHHHHHHHHhcccee
Confidence 99999999999999999999999999999999999999973
No 29
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-36 Score=307.99 Aligned_cols=283 Identities=12% Similarity=0.146 Sum_probs=199.0
Q ss_pred HHHHHHHHHHHHHhhhhhcCCCCEEEEEEeCCCCcccCCCccccEEecCCEEEEEeCCceEEEEeceeeCCCCChh--hH
Q 006826 71 LKKRRLDEKRREALNKILDIKGCIRVFCRVRSFLVTGRRVIHEPVLTELEKVVVRSGGSKKEFGFDKVFNQAASQE--DV 148 (630)
Q Consensus 71 ~~~~~~~~~Rr~l~n~~~elkG~IrV~~RvRP~~~~e~~~~~~~v~~~~~~v~v~~~~~~~~F~FD~VF~~~atQ~--eV 148 (630)
.++.+++..||+|||.|+||||||||||||||..-. ....+.+....+.+ .. +.+.|.||+||++.++|+ +|
T Consensus 3 dK~eqE~~~RRkL~NsI~ELKGnIRVFcrvrp~~~p----~~~~v~y~~~~I~v-~~-~~k~f~FDRVf~p~s~Qe~~~v 76 (298)
T 2o0a_A 3 STVEKELLRSRRLENSIIEQKGTMRCYAYVMEQNLP----ENLLFDYENGVITQ-GL-SEHVYKFNRVIPHLKVSEDKFF 76 (298)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTCCEEEEEECGGGSC----TTEEEETTTTEEEE-TT-TCCEEECSEEEETTTSCHHHHH
T ss_pred hHHHHHHHHHHHHHhHHHHhhCceEEEEEeccccCC----ccceeecCccceee-cC-CCceEEeeeEECccccccHHHH
Confidence 367788999999999999999999999999996511 11224555555655 22 448999999999999999 99
Q ss_pred HHhhHHHHHHhhc-CcceeEEecccCCCCcceeecCCCCCCCchhHHHHHHHHHHhc-CCCceEEEEEeEEEEe-cceee
Q 006826 149 FVEVEPILRSALD-GHNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQAAL-DNSSSVTFSMSMLEVY-MGSVR 225 (630)
Q Consensus 149 f~~v~plV~svl~-GyN~~IfaYGqTGSGKTyTM~G~~~~~GIIpRal~~LF~~~~~-~~~~~~~v~vS~lEIY-nE~I~ 225 (630)
|+++.++|++|++ |||+||||||||||||| ||++..+|..... .. |.|++++||+||| ||.++
T Consensus 77 f~E~~~~i~scLd~GyNvcIfSyGQTGsGKT-------------~ral~q~f~~~~~~~~-~~Y~~tlq~veLy~Ne~~~ 142 (298)
T 2o0a_A 77 TQEYSVYHDMCLNQKKNFNLISLSTTPHGSL-------------RESLIKFLAEKDTIYQ-KQYVITLQFVFLSDDEFSQ 142 (298)
T ss_dssp HHTTHHHHHHHHHTTCCEEEEEECSSCCHHH-------------HHHHHHHHHSTTSHHH-HHEEEEEEEEEEECC-CEE
T ss_pred HHHHHHHHHHHHhCCCceEEEEECCCCCCcc-------------HHHHHHHHHHhhhhcc-cceEEEEEEEEEecCCchH
Confidence 9999999999999 99999999999999999 9999999986532 22 9999999999999 99999
Q ss_pred ecCCCCCccchhhhhcccCeeEEeCCCCCEEEcCcEEEEcCC-hHHHHHHHHhhhhcccccccCCCCCCCCcEEEEEEEE
Q 006826 226 DLLAPKPVFKAYEAATRCNLNIQTDAKGTVEIEGLTEVQIPD-FTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITI 304 (630)
Q Consensus 226 DLL~~~~~~~~~~~~~~~~L~i~ed~~g~v~v~glt~v~V~s-~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~I~v 304 (630)
|||...+.. . .++|+.+.+|..+|.|++.+.|.+ ++|+..++.-+.. +..|. +.-.|+.+.+
T Consensus 143 DLL~~~~~~-------~-k~eIk~~~~g~~iv~~s~~i~V~~~~edv~~~~~~~~~------~~~~~---~gi~i~k~~~ 205 (298)
T 2o0a_A 143 DMLLDYSHN-------D-KDSIKLKFEKHSISLDSKLVIIENGLEDLPLNFSCDEH------PNLPH---SGMGIIKVQF 205 (298)
T ss_dssp ETTSCCC--------------CEEEECSSCEEEESCCEEESSGGGGSCTTTTCC----------------CEEEEEEEEE
T ss_pred HhcCCCCCC-------C-cceEEecCCCCEEecccEEEEccccHHHHHHHhhcccc------cccCC---CCceEEEEEE
Confidence 999844431 1 468888899999999999999999 8998887732221 12222 2356677777
Q ss_pred EEecCCCCCc--eEEeEeEEEecCCCccccccCCCcchhhhhhhhhHhHHHHHHHHHHHHhCCCCccCCCCchhhhhhcc
Q 006826 305 FRHGDALEAK--TEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKRGHVPYRNSKLTQILRDS 382 (630)
Q Consensus 305 ~~~~~~~~~~--~~~skL~lVDLAGSEr~~kt~a~g~rl~E~~~INkSLsaLg~VI~aL~~~~~hiPYRdSKLT~LLqds 382 (630)
...+...++. ...--++|+.+.-.. +...|.+ ++..+ -+-.|+++-+|+.-
T Consensus 206 ~~~~~~~~~~~~~~~~d~yf~e~~~~~--------------------~~~~l~~---~~~~~----~~~~spi~~il~~l 258 (298)
T 2o0a_A 206 FPRDSKSDGNNDPVPVDFYFIELNNLK--------------------SIEQFDK---SIFKK----ESCETPIALVLKKL 258 (298)
T ss_dssp EESCC-------CCCEEEEEEEECSHH--------------------HHHHHHH---HHHTC-----CCCSHHHHHHHHH
T ss_pred ecCcccccccCCCCceEEEEEEeCCHH--------------------HHHHHHh---hcccc----cccCCcHHHHHHHH
Confidence 6632211111 112346777764322 2333333 22222 34578888888877
Q ss_pred cCCCceeeeEEecCCCCCcHHHhHHHHHHHHHhhcccccc
Q 006826 383 LGDGSKVLMLVHASPCEEDVGETICSLSFAKRARGIESNR 422 (630)
Q Consensus 383 LgGnskT~mI~~VSP~~~~~~ETlsTLrFA~rar~I~~~~ 422 (630)
|-. .|-++++++.-... .-.-|..++++..+.+-.
T Consensus 259 l~~-tks~~~~~l~~~~~----~~~lL~~s~~i~~~~~~~ 293 (298)
T 2o0a_A 259 ISD-TKSFFLLNLNDSKN----VNKLLTISEEVQTQLCKR 293 (298)
T ss_dssp HHH-SBCEEEEEECCGGG----HHHHHHHHHHHHHHTC--
T ss_pred Hhc-CcceEEEEecCCCc----hhHHHHHHHHhhcccCcc
Confidence 753 68889999875433 333778888887776543
No 30
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.96 E-value=6.6e-30 Score=225.08 Aligned_cols=87 Identities=39% Similarity=0.599 Sum_probs=82.1
Q ss_pred hhhhhHhHHHHHHHHHHHHhC-CCCccCCCCchhhhhhcccCCCceeeeEEecCCCCCcHHHhHHHHHHHHHhhcccccc
Q 006826 344 GRAINLSLSALADVIAALRRK-RGHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVGETICSLSFAKRARGIESNR 422 (630)
Q Consensus 344 ~~~INkSLsaLg~VI~aL~~~-~~hiPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~ETlsTLrFA~rar~I~~~~ 422 (630)
+++||+||++||+||.+|+.+ ..||||||||||+||||+|||||+|+||+||||+..+++||++||+||+||+.|++.+
T Consensus 1 a~~IN~SL~~Lg~vI~aL~~~~~~hvPyRdSkLT~lL~dsLgGnskt~mi~~vsp~~~~~~ETl~TL~fA~rak~i~~~~ 80 (100)
T 2kin_B 1 AKNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTV 80 (100)
T ss_dssp CCBSSHHHHHHHHHHHHHHHTCCSSCCGGGCHHHHHTHHHHHSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCcchHHHHHHHHHHHHHHhcCCCCCCCccchHHHHHHHHhcCCCceeEEEEeCcccchHHHHHHHHHHHHHHHhccCcc
Confidence 468999999999999999987 5899999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHH
Q 006826 423 ELSEDLKK 430 (630)
Q Consensus 423 ~~~~~~~~ 430 (630)
.+|+++..
T Consensus 81 ~~n~~~~~ 88 (100)
T 2kin_B 81 SVNLELTA 88 (100)
T ss_dssp CCEEECCH
T ss_pred eeccCCCH
Confidence 99976543
No 31
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.96 E-value=3.4e-29 Score=227.17 Aligned_cols=113 Identities=34% Similarity=0.528 Sum_probs=95.9
Q ss_pred hHhHHHHHHHHHHHHhCC-CCccCCCCchhhhhhcccCCCceeeeEEecCCCCCcHHHhHHHHHHHHHhhcccccccccH
Q 006826 348 NLSLSALADVIAALRRKR-GHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVGETICSLSFAKRARGIESNRELSE 426 (630)
Q Consensus 348 NkSLsaLg~VI~aL~~~~-~hiPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~ETlsTLrFA~rar~I~~~~~~~~ 426 (630)
|+||++||+||.||+++. .||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+||+.|++.+.+|+
T Consensus 1 N~SL~~Lg~vi~aL~~~~~~hvPyRdSkLT~lL~dsLggn~~t~~i~~isp~~~~~~eTl~TL~fa~rak~i~n~~~~n~ 80 (117)
T 3kin_B 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVNL 80 (117)
T ss_dssp CCHHHHHHHHHHHHHHSCCSSCCGGGSHHHHHTHHHHHSSSEEEEEEEECCSGGGHHHHHHHHHHHHHHTTCEEEECCCB
T ss_pred CCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHcCCCccceeeeeeCCCcccHHHHHHHHHHHHHhCcccCCceecC
Confidence 899999999999999874 7999999999999999999999999999999999999999999999999999999999997
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 427 DLKKRREIRMAELEEDMREAEAECQNVRNQIKEVESLLSE 466 (630)
Q Consensus 427 ~~~~~~~~~i~~L~~el~~l~~e~~~l~~qi~~~e~~l~e 466 (630)
+... .++.+++++..++++.|++++..+|.+++.
T Consensus 81 ~~~~------~~l~~~~~~e~~~~~~L~~~i~~Le~el~~ 114 (117)
T 3kin_B 81 ELTA------EEWKKKYEKEKEKNKALKSVIQHLEVELNR 114 (117)
T ss_dssp CCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6533 233444555556666677677666665543
No 32
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=98.72 E-value=1.2e-07 Score=97.84 Aligned_cols=286 Identities=14% Similarity=0.141 Sum_probs=168.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCEEEEEEeCCCCcccCCCccccEEecCCEEEEEeCC
Q 006826 49 EQQKNELEQSIINLEGEIVELRLKKRRLDEKRREALNKILDIKGCIRVFCRVRSFLVTGRRVIHEPVLTELEKVVVRSGG 128 (630)
Q Consensus 49 ~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~Rr~l~n~~~elkG~IrV~~RvRP~~~~e~~~~~~~v~~~~~~v~v~~~~ 128 (630)
+.+-.++++.+...+....+.-.++.++...||+|-|.|.|+||.||+|+=+-.-...+ ...+......|. +.+
T Consensus 16 ~~~~~~vq~kA~~~E~~Yn~~~dKmeqE~lrRRkLENSIdElKG~IRcFAYi~~~~~p~----~~~idY~~~~It--~~~ 89 (333)
T 4etp_B 16 EKEIAALEKEISKQEKFYNDTYNTVCKELLRSRRLENSIIEQKGTMRVYAYVMEQNLPE----NLLFDYENGVIT--QGL 89 (333)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSCCS----SCEEETTTTEEE--C--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCcEEEEEEECcccCCc----cEEEecccceEe--ecC
Confidence 34445677777778888888888889999999999999999999999999987632211 122333345554 555
Q ss_pred ceEEEEeceeeCCCC--ChhhHHHhhHHHHHHhh-cCcceeEEecccCCCCcceeecCCCCCCCchhHHHHHHHHHHhcC
Q 006826 129 SKKEFGFDKVFNQAA--SQEDVFVEVEPILRSAL-DGHNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQAALD 205 (630)
Q Consensus 129 ~~~~F~FD~VF~~~a--tQ~eVf~~v~plV~svl-~GyN~~IfaYGqTGSGKTyTM~G~~~~~GIIpRal~~LF~~~~~~ 205 (630)
..+.|.|++|++... .+..+|++.+..++.|+ .+.|+.||..|+.- .+..-..|+..+...
T Consensus 90 ~~~~y~FnRiIp~~~~~e~~~l~qE~q~y~DmcL~~~~NfslIsis~~~----------------w~~Lr~~lL~fi~~k 153 (333)
T 4etp_B 90 SEHVYKFNRVIPHLKVSEDCFFTQEYSVYHDMALNQKKNFNLISLSTTP----------------HGSLRESLIKFLAEK 153 (333)
T ss_dssp CCCEEECSEEEETTTCCHHHHHHHTTHHHHHHHHHTTCCEEEEEEESSC----------------CCHHHHHHHHHHHST
T ss_pred CcceEEEeeeechhhcchHHHHHHHHHHHHHHHHccCCCeeEEEecCCC----------------cHHHHHHHHHHHHhc
Confidence 678999999998776 56667789999999999 89999999988641 123444455555444
Q ss_pred ---CCceEEEEEeEEEEecce-eeecCCCCCccchhhhhcccCeeEEeCCCCCEEEcCcEEEEcCChHHHHHHHHhhhhc
Q 006826 206 ---NSSSVTFSMSMLEVYMGS-VRDLLAPKPVFKAYEAATRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRV 281 (630)
Q Consensus 206 ---~~~~~~v~vS~lEIYnE~-I~DLL~~~~~~~~~~~~~~~~L~i~ed~~g~v~v~glt~v~V~s~~e~~~ll~~g~~~ 281 (630)
-.+.|.+.+.|+.+.++. ..|||.+.... ....-.+.+.++ .+.+ +-+.+.+.+..+.+.++.....
T Consensus 154 ~~~Y~~~y~i~lQ~V~Lse~~~S~DlL~~~~~~----~~~~I~lkiee~---sI~l-dS~~i~i~~~~~~l~~~~kl~~- 224 (333)
T 4etp_B 154 DTIYQKQYVITLQFVFLSDDEFSQDMLLDYSHN----DKDSIKLKFEKH---SISL-DSKLVIIENGLEDLPLNFSADE- 224 (333)
T ss_dssp TCHHHHHEEEEEEEEECCSSSCCEESSCC--------------CEEETT---EEEC-CSCCEEESSGGGGSCTTSSCCC-
T ss_pred ccccccceEEEEEEEEEcCCCchhhhhcccccc----CCCCceEEeecc---eEee-cceEEEeccccccchhhhcccc-
Confidence 258899999999888776 79999875421 011112333321 1222 3344555554432222110000
Q ss_pred ccccccCCCCCCCCcEEEEEEEEEEecCCCCCc--eEEeEeEEEecCCCccccccCCCcchhhhhhhhhHhHHHHHHHHH
Q 006826 282 RSTSWTNVNEASSRSHCLMRITIFRHGDALEAK--TEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIA 359 (630)
Q Consensus 282 R~~~~T~~N~~SSRSH~If~I~v~~~~~~~~~~--~~~skL~lVDLAGSEr~~kt~a~g~rl~E~~~INkSLsaLg~VI~ 359 (630)
.-+. -...-.|+.+.+...+...++. ...-..+||.+-+.. ....|.++|.
T Consensus 225 ------~~~~-~~~GI~IlKfqf~~~~~~~~~n~~~~~~~fYFiEi~~~~--------------------ti~~l~~~i~ 277 (333)
T 4etp_B 225 ------HPNL-PHSGMGIIKVQFFPRDSKSDGNNDPVPVDFYFIELNNLK--------------------SIEQFDKSIF 277 (333)
T ss_dssp ---------------CEEEEEEEEECC--------CCCEEEEEEEECSHH--------------------HHHHHHSCC-
T ss_pred ------CCCC-CCCCceEEEEEEEecCcccccccCCcceeEEEEEecChh--------------------HHHHHHhhcC
Confidence 0000 0113346677776654331111 112367888876543 2233333332
Q ss_pred HHHhCCCCccCCCCchhhhhhcccCCCceeeeEEecCCCCC
Q 006826 360 ALRRKRGHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEE 400 (630)
Q Consensus 360 aL~~~~~hiPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~ 400 (630)
-= -.-.|+++-+|+--|. ..|-++|+++.-...
T Consensus 278 ~~-------~~~~spi~~ilkkLl~-~TKS~flfnl~~~~~ 310 (333)
T 4etp_B 278 KK-------ESAETPIALVLKKLIS-DTKSFFLLNLNDSKN 310 (333)
T ss_dssp ----------CCCCHHHHHHHHHHH-HSBCEEEEEECCSTT
T ss_pred cc-------cccCCCHHHHHHHHHh-hCcceEEEEcCCcch
Confidence 21 1335677777776664 368889999976544
No 33
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.95 E-value=0.0043 Score=58.18 Aligned_cols=50 Identities=16% Similarity=0.211 Sum_probs=38.7
Q ss_pred EEEeceeeCCCCChhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 132 EFGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 132 ~F~FD~VF~~~atQ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
.++||.....+..|.+++..+..++.++-......++-||++|+|||+.+
T Consensus 6 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 6 NANLDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp TCCSSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHH
T ss_pred hCccccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHH
Confidence 35788866656678888888888888765444456788999999999987
No 34
>4gkp_A Spindle POLE BODY-associated protein VIK1; kinesin motor domain-like fold, microtubule binding protein, KAR3, structural protein; 2.42A {Candida glabrata} PDB: 4gkq_A
Probab=94.91 E-value=0.11 Score=53.05 Aligned_cols=264 Identities=14% Similarity=0.187 Sum_probs=130.0
Q ss_pred HhhhhhcCCCCEEEEEEeCCCCcccCCCccccEEecCCEEEEEeCCceEEEEeceeeCCC--CChhhHHHhhHHHHHHhh
Q 006826 83 ALNKILDIKGCIRVFCRVRSFLVTGRRVIHEPVLTELEKVVVRSGGSKKEFGFDKVFNQA--ASQEDVFVEVEPILRSAL 160 (630)
Q Consensus 83 l~n~~~elkG~IrV~~RvRP~~~~e~~~~~~~v~~~~~~v~v~~~~~~~~F~FD~VF~~~--atQ~eVf~~v~plV~svl 160 (630)
|-|.|.|+||.||.|+=+-.-.-.+ ...+......|. ..+..+.|.|++|.+.. ..++-+|++.+...+.|+
T Consensus 4 LeNSIdElkG~iRcFAYi~e~~l~~----~~~IdY~~~tI~--~~~~~~~y~F~RiIp~~~~~e~~ll~qE~~~Y~DmCL 77 (275)
T 4gkp_A 4 LLNSITELKGCARLFANIIEDEISE----KLIVNYSDESIE--DMKNHKTYKFTKLIQNFSHQNKDLFKEDLHVYIDFCL 77 (275)
T ss_dssp ------------CEEEEEETTTSCT----TEEEETTTTEEE--ETTTTEEEECSEEEEECSSSCCCGGGTHHHHHHHHHH
T ss_pred ccccHHHhcCcEEEEEEEccccCCc----cEEEecccceec--cCCCccEEEEEeeeccccCCHHHHHHHHHHHHHHHHh
Confidence 6689999999999999985432111 112333345554 45666899999999644 334456678899999998
Q ss_pred -cCcceeEEecccCCCCcceeecCCCCCCCchhHHHHHHHHHHhcCCCceEEEEEeEEEEecce-eeecCCCCCccchhh
Q 006826 161 -DGHNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQAALDNSSSVTFSMSMLEVYMGS-VRDLLAPKPVFKAYE 238 (630)
Q Consensus 161 -~GyN~~IfaYGqTGSGKTyTM~G~~~~~GIIpRal~~LF~~~~~~~~~~~~v~vS~lEIYnE~-I~DLL~~~~~~~~~~ 238 (630)
.+.|+.||..++.- .+-+.-..++.+.. .....|.+.+.++=+-.+. =.|||......
T Consensus 78 ~k~~NfnlISiS~~~------------~~~lr~~ll~f~~~----~y~~~y~itlQ~V~Ls~~~~S~Dll~~~~~~---- 137 (275)
T 4gkp_A 78 KRRENFNLFSVGSSN------------IPNTFEKLLAFFKN----NYFDKFVITLQYVMLSDNADSQDLLSNNKDG---- 137 (275)
T ss_dssp HTTCCEEEEEECCSS------------CCSHHHHHHHHHHH----HTTTTEEEEEEEEEEC----CEETTCC--------
T ss_pred ccCCCceEEEecCCC------------cHHHHHHHHHHHHH----hccccceEEEEEEEecCCCcccccccCCccc----
Confidence 68999999987633 22333344444443 3456788888888876555 45988655421
Q ss_pred hhcccCeeEEeCCCCCEEEcCcEEEEcCChHHHHHHHHhhhhcccccccCCCCCCCCcEEEEEEEEEEecCCCCCceEEe
Q 006826 239 AATRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDALEAKTEVS 318 (630)
Q Consensus 239 ~~~~~~L~i~ed~~g~v~v~glt~v~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~I~v~~~~~~~~~~~~~s 318 (630)
.....++++-+.+. +.+ +-+.+.+.+..+...+.. ..-+......-.|+.+.+...++.. .. .-
T Consensus 138 -~~d~eI~Lk~e~~s-I~l-dS~~i~i~~~~~~~~~~~----------~~~~~~~~~Gi~IlKfq~~~~~~~e-~~--pi 201 (275)
T 4gkp_A 138 -GKDVEIKLKIEEST-ISL-GSTLITLDEITDKLQIKK----------KYSQLNHQNGIGLSKFQFFCLQDIE-PI--PI 201 (275)
T ss_dssp -------CEEECSSC-EEE-CSCCEEGGGCCSCC--CC----------SCC-----CCEEEEEEEEEETTCSS-CC--CE
T ss_pred -cCCcceeEEeecce-eee-cceEEEeccCccccchhh----------hccCCCCCCCceEEEEEEEeccCCC-CC--ce
Confidence 01112333322211 222 222333333222211110 0001111112336666665543321 11 12
Q ss_pred EeEEEecCCCccccccCCCcchhhhhhhhhHhHHHHHHHHHHHHhCCCCccCCCCchhhhhhcccCCCceeeeEEecCCC
Q 006826 319 KLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKRGHVPYRNSKLTQILRDSLGDGSKVLMLVHASPC 398 (630)
Q Consensus 319 kL~lVDLAGSEr~~kt~a~g~rl~E~~~INkSLsaLg~VI~aL~~~~~hiPYRdSKLT~LLqdsLgGnskT~mI~~VSP~ 398 (630)
..+||.+-+..- ...|.+++.. + . +-.|.++-+|+--|. ..|-+++.++.-.
T Consensus 202 dfYFiei~~~~t--------------------~~~L~~~~s~---~-~---~~~spi~~iLk~LL~-~TKS~flfni~~~ 253 (275)
T 4gkp_A 202 DFYFIEIYQPSI--------------------YPILKRSTGT---E-S---NLNSPLEIVLKKIFH-DTKSAFVFQIDHS 253 (275)
T ss_dssp EEEEEEECCGGG--------------------HHHHHHC---------------CHHHHHHHHHHH-HSBCCEEEEESSC
T ss_pred eEEEEEecCHHH--------------------HHHHHhccCC---C-C---CCCCcHHHHHHHHHh-cCcceEEEEccCc
Confidence 678888866442 2233333221 1 1 112778877876665 4688899998643
Q ss_pred CCcHHHhHHHHHHHHHhhcccc
Q 006826 399 EEDVGETICSLSFAKRARGIES 420 (630)
Q Consensus 399 ~~~~~ETlsTLrFA~rar~I~~ 420 (630)
++.-..|..+.++.++++
T Consensus 254 ----~n~~~lL~ls~~l~~~~~ 271 (275)
T 4gkp_A 254 ----AEVYDILKLSSHLSFIRN 271 (275)
T ss_dssp ----TTHHHHHHHHHHHTTCCC
T ss_pred ----chHHHHHHHHHHhccccC
Confidence 234467888888888875
No 35
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.93 E-value=0.012 Score=56.02 Aligned_cols=50 Identities=16% Similarity=0.167 Sum_probs=36.3
Q ss_pred EEEeceeeCCCCChhhHHHhhHHHHHHhhcCcc-eeEEecccCCCCcceee
Q 006826 132 EFGFDKVFNQAASQEDVFVEVEPILRSALDGHN-VCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 132 ~F~FD~VF~~~atQ~eVf~~v~plV~svl~GyN-~~IfaYGqTGSGKTyTM 181 (630)
.++||.....+..+..++..+..++...-.++. ..|+-||++|+|||+.+
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHH
T ss_pred cCCHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHH
Confidence 467887665555667777777667666544432 67889999999999986
No 36
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.97 E-value=0.19 Score=54.67 Aligned_cols=41 Identities=39% Similarity=0.609 Sum_probs=31.1
Q ss_pred eeEEecccCCCCcceeec--------------CC---CCCCCchhHHHHHHHHHHhcC
Q 006826 165 VCVLAYGQTGTGKTFTMD--------------GT---SDQPGIVPRALEELFRQAALD 205 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM~--------------G~---~~~~GIIpRal~~LF~~~~~~ 205 (630)
-.|+-||++|+|||.+.- |+ ....|--.+.++++|..+...
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~~ 264 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLAREN 264 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHHHHHHHHHHHc
Confidence 459999999999997652 21 234688899999999876544
No 37
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=92.02 E-value=0.034 Score=57.42 Aligned_cols=50 Identities=16% Similarity=0.322 Sum_probs=34.4
Q ss_pred EEeceeeCCCCChhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceeec
Q 006826 133 FGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 133 F~FD~VF~~~atQ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM~ 182 (630)
++||.+......+..++..+..++...-.+....|+-||++|+||||.+.
T Consensus 121 ~tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 121 IHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHH
T ss_pred CCHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHH
Confidence 56776544433555666655666666544445678889999999999874
No 38
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.51 E-value=0.72 Score=49.69 Aligned_cols=42 Identities=36% Similarity=0.464 Sum_probs=31.7
Q ss_pred ceeEEecccCCCCcceee--------------cCC---CCCCCchhHHHHHHHHHHhcC
Q 006826 164 NVCVLAYGQTGTGKTFTM--------------DGT---SDQPGIVPRALEELFRQAALD 205 (630)
Q Consensus 164 N~~IfaYGqTGSGKTyTM--------------~G~---~~~~GIIpRal~~LF~~~~~~ 205 (630)
.-.|+-||+.|+|||... .|+ ....|--.+.++++|..+...
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~ 240 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREH 240 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHHHHHHHHT
T ss_pred CCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHHHHHHHHh
Confidence 356999999999999875 121 234578889999999877654
No 39
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.55 E-value=0.64 Score=50.54 Aligned_cols=42 Identities=26% Similarity=0.305 Sum_probs=31.0
Q ss_pred ceeEEecccCCCCcceeec--------------CC---CCCCCchhHHHHHHHHHHhcC
Q 006826 164 NVCVLAYGQTGTGKTFTMD--------------GT---SDQPGIVPRALEELFRQAALD 205 (630)
Q Consensus 164 N~~IfaYGqTGSGKTyTM~--------------G~---~~~~GIIpRal~~LF~~~~~~ 205 (630)
.-.|+-||++|+|||++.- |+ ....|--.+.++.+|..+...
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGese~~ir~lF~~A~~~ 273 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEK 273 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHHHHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchHHHHHHHHHHHHHhc
Confidence 4568999999999997651 11 235688889999999876543
No 40
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.97 E-value=0.63 Score=50.62 Aligned_cols=18 Identities=50% Similarity=0.691 Sum_probs=15.3
Q ss_pred ceeEEecccCCCCcceee
Q 006826 164 NVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 164 N~~IfaYGqTGSGKTyTM 181 (630)
.-.|+-||++|+|||++.
T Consensus 215 prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 356899999999999864
No 41
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=87.04 E-value=0.16 Score=50.38 Aligned_cols=45 Identities=24% Similarity=0.293 Sum_probs=23.4
Q ss_pred EEEeceeeCCCCChhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 132 EFGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 132 ~F~FD~VF~~~atQ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
.|+||.+.+. ......+...+..+.. .+..|+-||++|+|||+..
T Consensus 2 ~~~f~~~ig~----~~~~~~~~~~~~~~~~-~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 2 AEYKDNLLGE----ANSFLEVLEQVSHLAP-LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp --------CC----CHHHHHHHHHHHHHTT-SCSCEEEECCTTSCHHHHH
T ss_pred CcccccceeC----CHHHHHHHHHHHHHhC-CCCCEEEECCCCCcHHHHH
Confidence 4788888753 3444444334444333 3467888999999999875
No 42
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=86.49 E-value=0.19 Score=48.05 Aligned_cols=45 Identities=11% Similarity=0.268 Sum_probs=27.4
Q ss_pred EEeceeeCCCCChhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 133 FGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 133 F~FD~VF~~~atQ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
++||.++.. ..+..++..+..++. .+....|+-||++|+|||+.+
T Consensus 25 ~~~~~~~~~-~~~~~~~~~l~~~~~---~~~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 25 ETFTSYYPA-AGNDELIGALKSAAS---GDGVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp CSTTTSCC---CCHHHHHHHHHHHH---TCSCSEEEEECSTTSSHHHHH
T ss_pred CChhhccCC-CCCHHHHHHHHHHHh---CCCCCeEEEECCCCCCHHHHH
Confidence 456655442 233455544443333 235567889999999999876
No 43
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=86.35 E-value=0.28 Score=44.62 Aligned_cols=29 Identities=17% Similarity=0.217 Sum_probs=22.5
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
..++..+..+....++-||++|+|||+.+
T Consensus 32 ~~l~~~l~~~~~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 32 RRTIQVLQRRTKNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp HHHHHHHTSSSSCEEEEECCTTSCHHHHH
T ss_pred HHHHHHHhcCCCCceEEECCCCCCHHHHH
Confidence 45555555566677899999999999987
No 44
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=85.36 E-value=0.28 Score=50.16 Aligned_cols=48 Identities=19% Similarity=0.307 Sum_probs=30.1
Q ss_pred EEEeceeeCCCCChhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 132 EFGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 132 ~F~FD~VF~~~atQ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
.|+||..... ..+...+..+..++..-- +....++-||++|+|||+.+
T Consensus 7 ~~~f~~fv~g-~~~~~a~~~~~~~~~~~~-~~~~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 7 KYTLENFIVG-EGNRLAYEVVKEALENLG-SLYNPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp TCCSSSCCCC-TTTHHHHHHHHHHHHTTT-TSCSSEEEECSSSSSHHHHH
T ss_pred CCCcccCCCC-CcHHHHHHHHHHHHhCcC-CCCCeEEEECCCCCcHHHHH
Confidence 4788876532 234445554544444321 13346888999999999987
No 45
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=84.46 E-value=0.3 Score=44.43 Aligned_cols=29 Identities=17% Similarity=0.210 Sum_probs=22.5
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
..+++.+..+....|+-||++|+|||+.+
T Consensus 32 ~~l~~~l~~~~~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 32 RRAIQILSRRTKNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp HHHHHHHTSSSSCEEEEESCGGGCHHHHH
T ss_pred HHHHHHHhCCCCCceEEECCCCCCHHHHH
Confidence 45555555566777899999999999976
No 46
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=83.52 E-value=0.25 Score=50.85 Aligned_cols=47 Identities=32% Similarity=0.344 Sum_probs=31.1
Q ss_pred eceeeCCCCChhhHHHhhHHHHHHhhc-CcceeEEecccCCCCcceee
Q 006826 135 FDKVFNQAASQEDVFVEVEPILRSALD-GHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 135 FD~VF~~~atQ~eVf~~v~plV~svl~-GyN~~IfaYGqTGSGKTyTM 181 (630)
.+++++.-..+++....+...+..++. +...+++-||++|+|||+++
T Consensus 14 ~~~~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 14 PDYVPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp TTCCCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHH
T ss_pred CccCCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 333443444556666666555555543 44568999999999999887
No 47
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=83.41 E-value=0.45 Score=49.16 Aligned_cols=46 Identities=26% Similarity=0.232 Sum_probs=33.7
Q ss_pred EEEeceeeCCCCChhhHHHhhHHHHHHhhcCcce--eEEecccCCCCcceee
Q 006826 132 EFGFDKVFNQAASQEDVFVEVEPILRSALDGHNV--CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 132 ~F~FD~VF~~~atQ~eVf~~v~plV~svl~GyN~--~IfaYGqTGSGKTyTM 181 (630)
.+.||.+.+ |+.+...+..++..+-.|... .++-||++|+|||+..
T Consensus 40 ~~~~~~ivG----~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 40 RQASQGMVG----QLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp CSEETTEES----CHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHH
T ss_pred CcchhhccC----hHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHH
Confidence 355666664 566666666677777777654 7899999999999876
No 48
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=82.75 E-value=0.37 Score=47.57 Aligned_cols=50 Identities=24% Similarity=0.274 Sum_probs=30.8
Q ss_pred EEEeceeeCCCCChhhHHHhhHHH-----HHHhhcCcceeEEecccCCCCcceee
Q 006826 132 EFGFDKVFNQAASQEDVFVEVEPI-----LRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 132 ~F~FD~VF~~~atQ~eVf~~v~pl-----V~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
.+.||.+.+.+...+.+...+..+ ....-......|+-||++|+|||+.+
T Consensus 7 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 7 NVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHH
Confidence 467888887766655554433221 11111123445899999999999976
No 49
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=82.45 E-value=0.5 Score=48.05 Aligned_cols=47 Identities=17% Similarity=0.267 Sum_probs=26.6
Q ss_pred eceeeCCCCChhhHHHhh-HHHHHHhhc--Cc--ceeEEecccCCCCcceee
Q 006826 135 FDKVFNQAASQEDVFVEV-EPILRSALD--GH--NVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 135 FD~VF~~~atQ~eVf~~v-~plV~svl~--Gy--N~~IfaYGqTGSGKTyTM 181 (630)
||.+|+..---..+.+.+ ..++...+. |. ...|+-||++|+|||+..
T Consensus 2 ~~~~~~~~y~~~~~~~~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 2 LDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQC 53 (293)
T ss_dssp CCCEETTEECCHHHHHHHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHH
T ss_pred cccccCcccCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 444443322223333433 555665553 22 236788999999999865
No 50
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.16 E-value=1.8 Score=47.01 Aligned_cols=42 Identities=33% Similarity=0.497 Sum_probs=31.9
Q ss_pred ceeEEecccCCCCcceee--------------cCC---CCCCCchhHHHHHHHHHHhcC
Q 006826 164 NVCVLAYGQTGTGKTFTM--------------DGT---SDQPGIVPRALEELFRQAALD 205 (630)
Q Consensus 164 N~~IfaYGqTGSGKTyTM--------------~G~---~~~~GIIpRal~~LF~~~~~~ 205 (630)
.-.|+-||+.|+|||.+. .|+ ....|--.+.++.+|..+...
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~~ 274 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGEN 274 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHHHHHHHHT
T ss_pred CCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHHHHHHHhc
Confidence 456999999999999764 222 245688899999999877654
No 51
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=81.60 E-value=0.51 Score=46.91 Aligned_cols=21 Identities=33% Similarity=0.257 Sum_probs=18.3
Q ss_pred cCcceeEEecccCCCCcceee
Q 006826 161 DGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 161 ~GyN~~IfaYGqTGSGKTyTM 181 (630)
......|+-||++|+|||+..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALA 81 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHH
Confidence 566778999999999999976
No 52
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=81.55 E-value=0.48 Score=48.87 Aligned_cols=40 Identities=25% Similarity=0.355 Sum_probs=29.6
Q ss_pred CCChhhHHHhhHHHHHHhhcCcc-e--eEEecccCCCCcceee
Q 006826 142 AASQEDVFVEVEPILRSALDGHN-V--CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 142 ~atQ~eVf~~v~plV~svl~GyN-~--~IfaYGqTGSGKTyTM 181 (630)
-..+++....+...+..++.|.. . +++-||++|+|||+++
T Consensus 19 l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 19 LPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTL 61 (389)
T ss_dssp CTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHH
Confidence 34556666677677777776643 3 6889999999999876
No 53
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=80.36 E-value=0.62 Score=44.46 Aligned_cols=26 Identities=46% Similarity=0.673 Sum_probs=20.6
Q ss_pred HHHHHHhhcCcceeEEecccCCCCccee
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFT 180 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyT 180 (630)
...+..+++|.| ++..++||||||.+
T Consensus 42 ~~~i~~~~~~~~--~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 42 QRAIMPIIEGHD--VLAQAQSGTGKTGT 67 (224)
T ss_dssp HHHHHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHHHHhcCCC--EEEECCCCCcHHHH
Confidence 345667778877 67788999999987
No 54
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=79.82 E-value=0.52 Score=49.11 Aligned_cols=31 Identities=10% Similarity=0.011 Sum_probs=23.5
Q ss_pred hhHHHHHHhh-cCcceeEEecccCCCCcceee
Q 006826 151 EVEPILRSAL-DGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 151 ~v~plV~svl-~GyN~~IfaYGqTGSGKTyTM 181 (630)
.+...|..++ .|...+|+-||++|+|||.++
T Consensus 31 ~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 31 RIFLPIYDSLMSSQNKLFYITNADDSTKFQLV 62 (318)
T ss_dssp HHHHHHHHHHHTTCCCEEEEECCCSHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 3444445554 567789999999999999886
No 55
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=79.60 E-value=0.84 Score=45.83 Aligned_cols=20 Identities=30% Similarity=0.335 Sum_probs=16.3
Q ss_pred CcceeEEecccCCCCcceee
Q 006826 162 GHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 162 GyN~~IfaYGqTGSGKTyTM 181 (630)
.....|+-||++|+|||++.
T Consensus 65 ~~~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHH
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 33446899999999999976
No 56
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=79.52 E-value=0.95 Score=44.09 Aligned_cols=44 Identities=23% Similarity=0.270 Sum_probs=27.4
Q ss_pred EeceeeCCCCChhhHHHhhHHHHHHhhc---------CcceeEEecccCCCCcceee
Q 006826 134 GFDKVFNQAASQEDVFVEVEPILRSALD---------GHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 134 ~FD~VF~~~atQ~eVf~~v~plV~svl~---------GyN~~IfaYGqTGSGKTyTM 181 (630)
.||.|.+. +++-..+..++..+.. .....|+-||++|+|||+..
T Consensus 4 ~~~~i~G~----~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 4 SFKDVAGM----HEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CTTSSCSC----HHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHH
T ss_pred CHHHhCCH----HHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHH
Confidence 45555443 4455555455543321 33456899999999999976
No 57
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=79.42 E-value=0.87 Score=49.28 Aligned_cols=46 Identities=24% Similarity=0.180 Sum_probs=34.2
Q ss_pred EEEeceeeCCCCChhhHHHhhHHHHHHhhcCcc--eeEEecccCCCCcceee
Q 006826 132 EFGFDKVFNQAASQEDVFVEVEPILRSALDGHN--VCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 132 ~F~FD~VF~~~atQ~eVf~~v~plV~svl~GyN--~~IfaYGqTGSGKTyTM 181 (630)
.|.||.|. .|+++...+..+++.+..|.. ..|+-||++|+|||+..
T Consensus 33 ~~~~~~ii----G~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 33 KQAASGLV----GQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp CSEETTEE----SCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHH
T ss_pred hhchhhcc----CHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHH
Confidence 35667766 467777777777777777754 36788999999999875
No 58
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=79.40 E-value=0.73 Score=42.81 Aligned_cols=34 Identities=29% Similarity=0.366 Sum_probs=21.8
Q ss_pred hhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 145 QEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 145 Q~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
++++...+...+. .+....++-||++|+|||+.+
T Consensus 22 ~~~~~~~l~~~l~---~~~~~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 22 QDEVIQRLKGYVE---RKNIPHLLFSGPPGTGKTATA 55 (226)
T ss_dssp CHHHHHHHHHHHH---TTCCCCEEEECSTTSSHHHHH
T ss_pred cHHHHHHHHHHHh---CCCCCeEEEECCCCCCHHHHH
Confidence 3444444433333 333334999999999999876
No 59
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=79.33 E-value=0.57 Score=50.67 Aligned_cols=48 Identities=17% Similarity=0.351 Sum_probs=29.3
Q ss_pred EEEEeceeeCCCCChhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 131 KEFGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 131 ~~F~FD~VF~~~atQ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
..|+||..... ..+...+..+..++.. .|..-.++-||++|+|||+.+
T Consensus 100 ~~~tfd~fv~g-~~n~~a~~~~~~~a~~--~~~~~~lll~Gp~G~GKTtLa 147 (440)
T 2z4s_A 100 PDYTFENFVVG-PGNSFAYHAALEVAKH--PGRYNPLFIYGGVGLGKTHLL 147 (440)
T ss_dssp TTCSGGGCCCC-TTTHHHHHHHHHHHHS--TTSSCCEEEECSSSSSHHHHH
T ss_pred CCCChhhcCCC-CchHHHHHHHHHHHhC--CCCCCeEEEECCCCCCHHHHH
Confidence 45788875432 2333344444444433 231346888999999999987
No 60
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=79.30 E-value=0.72 Score=43.25 Aligned_cols=27 Identities=37% Similarity=0.649 Sum_probs=20.2
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
...+..+++|.+ ++..++||||||.+.
T Consensus 29 ~~~i~~~~~~~~--~li~~~TGsGKT~~~ 55 (207)
T 2gxq_A 29 AAALPLALEGKD--LIGQARTGTGKTLAF 55 (207)
T ss_dssp HHHHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHHcCCCC--EEEECCCCChHHHHH
Confidence 345566778876 566789999999873
No 61
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=78.77 E-value=0.82 Score=42.91 Aligned_cols=27 Identities=37% Similarity=0.538 Sum_probs=20.2
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
...+..+++|.| ++..++||||||.+.
T Consensus 31 ~~~i~~~~~~~~--~lv~apTGsGKT~~~ 57 (206)
T 1vec_A 31 EESIPIALSGRD--ILARAKNGTGKSGAY 57 (206)
T ss_dssp HHHHHHHHTTCC--EEEECCSSSTTHHHH
T ss_pred HHHHHHHccCCC--EEEECCCCCchHHHH
Confidence 345666778876 567789999999754
No 62
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=78.49 E-value=0.47 Score=48.44 Aligned_cols=44 Identities=34% Similarity=0.523 Sum_probs=28.8
Q ss_pred EEEEeceeeCCCCChhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 131 KEFGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 131 ~~F~FD~VF~~~atQ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
..|.||.+++. +.+... +...++.+....|+-||++|+|||+..
T Consensus 19 ~~~~f~~i~G~----~~~~~~---l~~~~~~~~~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 19 PVFPFSAIVGQ----EDMKLA---LLLTAVDPGIGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp CCCCGGGSCSC----HHHHHH---HHHHHHCGGGCCEEEECCGGGCTTHHH
T ss_pred CCCCchhccCh----HHHHHH---HHHHhhCCCCceEEEECCCCccHHHHH
Confidence 45788887754 333322 333344444455999999999999876
No 63
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=78.44 E-value=0.36 Score=44.27 Aligned_cols=17 Identities=24% Similarity=0.649 Sum_probs=14.4
Q ss_pred eeEEecccCCCCcceee
Q 006826 165 VCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM 181 (630)
-.++-||++|+|||+.+
T Consensus 37 ~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp SEEEEESSSTTTTCHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 35667999999999987
No 64
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=77.19 E-value=0.53 Score=47.89 Aligned_cols=18 Identities=44% Similarity=0.648 Sum_probs=15.5
Q ss_pred ceeEEecccCCCCcceee
Q 006826 164 NVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 164 N~~IfaYGqTGSGKTyTM 181 (630)
...|+-||++|+|||+.+
T Consensus 49 ~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CSEEEEECSSSSSHHHHH
T ss_pred CceEEEECCCCcCHHHHH
Confidence 456899999999999876
No 65
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=76.97 E-value=0.91 Score=44.07 Aligned_cols=26 Identities=35% Similarity=0.537 Sum_probs=20.7
Q ss_pred HHHHHHhhcCcceeEEecccCCCCccee
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFT 180 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyT 180 (630)
...+..+++|.+ +++.++||||||.+
T Consensus 57 ~~~i~~~~~~~~--~l~~a~TGsGKT~~ 82 (245)
T 3dkp_A 57 MQAIPVMLHGRE--LLASAPTGSGKTLA 82 (245)
T ss_dssp HHHHHHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHHHHHhCCCC--EEEECCCCCcHHHH
Confidence 445667778877 57788999999987
No 66
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=76.96 E-value=0.56 Score=46.02 Aligned_cols=46 Identities=24% Similarity=0.292 Sum_probs=27.7
Q ss_pred EEEeceeeCCCCChhhHHHhhHHHHHH-----hhcCc----ceeEEecccCCCCcceee
Q 006826 132 EFGFDKVFNQAASQEDVFVEVEPILRS-----ALDGH----NVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 132 ~F~FD~VF~~~atQ~eVf~~v~plV~s-----vl~Gy----N~~IfaYGqTGSGKTyTM 181 (630)
.++||.|.+.+ ++..++..++.. ++.+. ...++-||++|+|||+.+
T Consensus 12 ~~~~~~i~g~~----~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 12 KVTFKDVAGAE----EAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp SCCGGGCCSCH----HHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCHHHhCCcH----HHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 47888876553 333333333322 22221 223899999999999987
No 67
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=76.86 E-value=0.59 Score=45.46 Aligned_cols=27 Identities=37% Similarity=0.569 Sum_probs=21.2
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
...+..+++|.| ++..++||||||.+.
T Consensus 58 ~~ai~~i~~~~~--~li~apTGsGKT~~~ 84 (237)
T 3bor_A 58 QRAIIPCIKGYD--VIAQAQSGTGKTATF 84 (237)
T ss_dssp HHHHHHHHTTCC--EEECCCSSHHHHHHH
T ss_pred HHHHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 355667788877 577899999999873
No 68
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=76.50 E-value=0.96 Score=46.66 Aligned_cols=39 Identities=31% Similarity=0.439 Sum_probs=29.1
Q ss_pred CChhhHHHhhHHHHHHhhcCc-ceeEEecccCCCCcceee
Q 006826 143 ASQEDVFVEVEPILRSALDGH-NVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 143 atQ~eVf~~v~plV~svl~Gy-N~~IfaYGqTGSGKTyTM 181 (630)
..+++..+.+...+..++.|. ..+|+-||++|+|||+++
T Consensus 23 ~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 23 PFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 445666666766777766554 457999999999999876
No 69
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=76.47 E-value=0.92 Score=45.04 Aligned_cols=46 Identities=22% Similarity=0.360 Sum_probs=28.0
Q ss_pred EEEeceeeCCCCChhhHHHhhHHHHHHhh----------cCcceeEEecccCCCCcceee
Q 006826 132 EFGFDKVFNQAASQEDVFVEVEPILRSAL----------DGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 132 ~F~FD~VF~~~atQ~eVf~~v~plV~svl----------~GyN~~IfaYGqTGSGKTyTM 181 (630)
.+.||.+.+.+ ++.+.+...+...+ -.....|+-||++|+|||+.+
T Consensus 13 ~~~~~~i~G~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 13 NVRYEDIGGLE----KQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCGGGSCSCH----HHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCHHHhcCHH----HHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 46787777544 34333333332221 124456899999999999865
No 70
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=76.21 E-value=1.2 Score=45.55 Aligned_cols=39 Identities=23% Similarity=0.233 Sum_probs=28.2
Q ss_pred CChhhHHHhhHHHHHHhh--cCcceeEEecccCCCCcceee
Q 006826 143 ASQEDVFVEVEPILRSAL--DGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 143 atQ~eVf~~v~plV~svl--~GyN~~IfaYGqTGSGKTyTM 181 (630)
..++.+...+..++..+. .+....|+-||++|+|||+..
T Consensus 32 iG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 32 IGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHH
T ss_pred CChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHH
Confidence 345666666766666654 344567899999999999865
No 71
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=75.18 E-value=1.3 Score=43.39 Aligned_cols=46 Identities=26% Similarity=0.284 Sum_probs=28.9
Q ss_pred EEEeceeeCCCCChhhHHHhhHHHHHHhhc---------CcceeEEecccCCCCcceee
Q 006826 132 EFGFDKVFNQAASQEDVFVEVEPILRSALD---------GHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 132 ~F~FD~VF~~~atQ~eVf~~v~plV~svl~---------GyN~~IfaYGqTGSGKTyTM 181 (630)
.+.||.|.+. +.+.+.+..++..+.. .....|+-||++|+|||+.+
T Consensus 8 ~~~~~~i~G~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 8 KTTFADVAGC----DEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCCGGGSCSC----HHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHH
T ss_pred CCCHHHhcCc----HHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHH
Confidence 3567777654 4455544444443221 12446899999999999876
No 72
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=75.08 E-value=1.1 Score=43.21 Aligned_cols=27 Identities=37% Similarity=0.637 Sum_probs=20.1
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
...+..+++|.+ ++..++||||||.+.
T Consensus 53 ~~~i~~~~~~~~--~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 53 KQTIGLALQGKD--VLGAAKTGSGKTLAF 79 (236)
T ss_dssp HHHHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHHhCCCC--EEEEeCCCCcHHHHH
Confidence 345566778877 466689999999863
No 73
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=75.03 E-value=1.4 Score=39.58 Aligned_cols=36 Identities=14% Similarity=0.142 Sum_probs=23.5
Q ss_pred hhHHHhhHHHHHHhhcCcceeEEecccCCCCcceeec
Q 006826 146 EDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 146 ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM~ 182 (630)
......+...+..+.. .+..|+-||++|+|||+...
T Consensus 10 s~~~~~l~~~~~~~~~-~~~~vll~G~~GtGKt~lA~ 45 (143)
T 3co5_A 10 SAAIQEMNREVEAAAK-RTSPVFLTGEAGSPFETVAR 45 (143)
T ss_dssp CHHHHHHHHHHHHHHT-CSSCEEEEEETTCCHHHHHG
T ss_pred CHHHHHHHHHHHHHhC-CCCcEEEECCCCccHHHHHH
Confidence 3444555555555443 34457889999999998763
No 74
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=74.81 E-value=0.63 Score=47.67 Aligned_cols=38 Identities=32% Similarity=0.469 Sum_probs=24.5
Q ss_pred ChhhHHHhhHHHHHHhhcC-cceeEEecccCCCCcceee
Q 006826 144 SQEDVFVEVEPILRSALDG-HNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 144 tQ~eVf~~v~plV~svl~G-yN~~IfaYGqTGSGKTyTM 181 (630)
.+++..+.+...+..++.| ...+++-||++|+|||+.+
T Consensus 24 gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 24 HREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp TCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHH
Confidence 3444444444444444433 3557899999999999876
No 75
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=74.25 E-value=1.4 Score=44.36 Aligned_cols=44 Identities=25% Similarity=0.295 Sum_probs=28.7
Q ss_pred EeceeeCCCCChhhHHHhhHHHHHHhh--cCcceeEEecccCCCCcceee
Q 006826 134 GFDKVFNQAASQEDVFVEVEPILRSAL--DGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 134 ~FD~VF~~~atQ~eVf~~v~plV~svl--~GyN~~IfaYGqTGSGKTyTM 181 (630)
.||.+. .++.+...+..++..+. .+....|+-||++|+|||+..
T Consensus 10 ~~~~~i----g~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 10 TLDEYI----GQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp STTTCC----SCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHH
T ss_pred cHHHhh----CHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHH
Confidence 455444 34555555655555544 234567888999999999875
No 76
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=74.21 E-value=1.2 Score=42.77 Aligned_cols=27 Identities=33% Similarity=0.501 Sum_probs=20.6
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
...+..+++|.|+ +..++||||||.+.
T Consensus 48 ~~~i~~~~~~~~~--l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 48 SQAWPIILQGIDL--IVVAQTGTGKTLSY 74 (228)
T ss_dssp HHHHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHHHhCCCCE--EEECCCCChHHHHH
Confidence 3456677788775 66789999999864
No 77
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=73.72 E-value=1.3 Score=42.22 Aligned_cols=27 Identities=30% Similarity=0.456 Sum_probs=20.4
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
...+..+++|.| ++..++||||||.+.
T Consensus 42 ~~~i~~~~~~~~--~li~~~TGsGKT~~~ 68 (220)
T 1t6n_A 42 HECIPQAILGMD--VLCQAKSGMGKTAVF 68 (220)
T ss_dssp HHHHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHHhCCCC--EEEECCCCCchhhhh
Confidence 345667778877 566679999999864
No 78
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=72.90 E-value=0.63 Score=43.68 Aligned_cols=26 Identities=35% Similarity=0.544 Sum_probs=19.6
Q ss_pred HHHHHhhcCcceeEEecccCCCCcceee
Q 006826 154 PILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 154 plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
..+..+++|.+ ++..++||||||.+.
T Consensus 40 ~~i~~~~~~~~--~li~~~tGsGKT~~~ 65 (216)
T 3b6e_A 40 EVAQPALEGKN--IIICLPTGSGKTRVA 65 (216)
T ss_dssp HHHHHHHTTCC--EEEECSCHHHHHHHH
T ss_pred HHHHHHhcCCC--EEEEcCCCCCHHHHH
Confidence 34555667766 566899999999986
No 79
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=72.64 E-value=1.7 Score=40.67 Aligned_cols=17 Identities=35% Similarity=0.362 Sum_probs=14.9
Q ss_pred eeEEecccCCCCcceee
Q 006826 165 VCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM 181 (630)
..++-||++|+|||+.+
T Consensus 46 ~~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIA 62 (250)
T ss_dssp SEEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999876
No 80
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=72.36 E-value=1.4 Score=45.88 Aligned_cols=36 Identities=25% Similarity=0.340 Sum_probs=25.4
Q ss_pred hhHHHhhHHHH-HHhhcC---cceeEEe--cccCCCCcceee
Q 006826 146 EDVFVEVEPIL-RSALDG---HNVCVLA--YGQTGTGKTFTM 181 (630)
Q Consensus 146 ~eVf~~v~plV-~svl~G---yN~~Ifa--YGqTGSGKTyTM 181 (630)
++-.+.+...+ ..+..| ...+++. ||+.|+|||..+
T Consensus 28 ~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 28 RGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp CHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHH
T ss_pred HHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHH
Confidence 33444455555 666666 4567888 999999999876
No 81
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=72.25 E-value=1.4 Score=43.04 Aligned_cols=27 Identities=30% Similarity=0.539 Sum_probs=20.6
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
...+..+++|.|+ +..++||||||.+.
T Consensus 51 ~~~i~~i~~~~~~--l~~a~TGsGKT~~~ 77 (253)
T 1wrb_A 51 KNAIPAILEHRDI--MACAQTGSGKTAAF 77 (253)
T ss_dssp HHHHHHHHTTCCE--EEECCTTSSHHHHH
T ss_pred HHHHHHHhCCCCE--EEECCCCChHHHHH
Confidence 4566777888774 56679999999864
No 82
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=72.17 E-value=1.4 Score=47.63 Aligned_cols=28 Identities=29% Similarity=0.436 Sum_probs=22.8
Q ss_pred HHHHHhhcCcceeEEecccCCCCcceee
Q 006826 154 PILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 154 plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
+++..++..-...|...|+||||||.||
T Consensus 157 ~~L~~l~~~~ggii~I~GpnGSGKTTlL 184 (418)
T 1p9r_A 157 DNFRRLIKRPHGIILVTGPTGSGKSTTL 184 (418)
T ss_dssp HHHHHHHTSSSEEEEEECSTTSCHHHHH
T ss_pred HHHHHHHHhcCCeEEEECCCCCCHHHHH
Confidence 4666666656678899999999999998
No 83
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=71.97 E-value=1.4 Score=43.65 Aligned_cols=27 Identities=37% Similarity=0.690 Sum_probs=21.3
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
..++..++.|.| +++.++||||||.+.
T Consensus 82 ~~~i~~~~~~~~--~lv~a~TGsGKT~~~ 108 (262)
T 3ly5_A 82 HKSIRPLLEGRD--LLAAAKTGSGKTLAF 108 (262)
T ss_dssp HHHHHHHHHTCC--CEECCCTTSCHHHHH
T ss_pred HHHHHHHhCCCc--EEEEccCCCCchHHH
Confidence 456677788876 678899999999863
No 84
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=70.78 E-value=2.3 Score=38.14 Aligned_cols=33 Identities=21% Similarity=0.311 Sum_probs=21.2
Q ss_pred HHHhhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 148 VFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 148 Vf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
....+...+..+. ..+..|+-||++|+|||+..
T Consensus 9 ~~~~~~~~~~~~a-~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 9 WINQYRRRLQQLS-ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp HHHHHHHHHHHHT-TCCSCEEEESSTTSSHHHHH
T ss_pred HHHHHHHHHHHHh-CCCCCEEEECCCCCCHHHHH
Confidence 3334433333332 44566899999999999865
No 85
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=70.56 E-value=1.9 Score=43.05 Aligned_cols=38 Identities=32% Similarity=0.344 Sum_probs=26.1
Q ss_pred ChhhHHHhhHHHHHHhhcCc------ceeEEecccCCCCcceee
Q 006826 144 SQEDVFVEVEPILRSALDGH------NVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 144 tQ~eVf~~v~plV~svl~Gy------N~~IfaYGqTGSGKTyTM 181 (630)
.|..+...+...|.....|. ...++-||++|+|||++.
T Consensus 21 G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 21 GQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELA 64 (311)
T ss_dssp SCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHH
Confidence 45666666655555554332 357899999999999876
No 86
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=70.49 E-value=1.6 Score=44.48 Aligned_cols=29 Identities=34% Similarity=0.358 Sum_probs=21.8
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
...+..++.|..--+++.++||||||.+.
T Consensus 120 ~~ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 120 ENALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp HHHHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred HHHHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 34567778884445788899999999873
No 87
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=70.34 E-value=1.4 Score=42.77 Aligned_cols=27 Identities=33% Similarity=0.479 Sum_probs=19.6
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
...+..+++|.|+ ++.++||||||.+.
T Consensus 57 ~~~i~~~~~g~~~--l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 57 AQGWPVALSGLDM--VGVAQTGSGKTLSY 83 (242)
T ss_dssp HHHHHHHHHTCCE--EEEECTTSCHHHHH
T ss_pred HHHHHHHhCCCCE--EEECCCcCHHHHHH
Confidence 3445667788775 55579999999873
No 88
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=70.26 E-value=1.4 Score=46.38 Aligned_cols=27 Identities=33% Similarity=0.475 Sum_probs=20.5
Q ss_pred HHHHhhcCcceeEEecccCCCCcceee
Q 006826 155 ILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 155 lV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
.+.+++.--...|...|+||||||.+|
T Consensus 114 ~l~~l~~~~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 114 VFKRVSDVPRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp HHHHHHHCSSEEEEEECSTTSCHHHHH
T ss_pred HHHHHHhCCCCEEEEECCCCCCHHHHH
Confidence 444555445558888899999999998
No 89
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=70.26 E-value=1.6 Score=41.98 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=19.3
Q ss_pred HHHHHhhcCcceeEEecccCCCCccee
Q 006826 154 PILRSALDGHNVCVLAYGQTGTGKTFT 180 (630)
Q Consensus 154 plV~svl~GyN~~IfaYGqTGSGKTyT 180 (630)
..+..+++|.|+ +..++||||||.+
T Consensus 53 ~~i~~~~~~~~~--l~~a~TGsGKT~~ 77 (230)
T 2oxc_A 53 KAIPLGRCGLDL--IVQAKSGTGKTCV 77 (230)
T ss_dssp HHHHHHHTTCCE--EEECCTTSSHHHH
T ss_pred HHHHHHhCCCCE--EEECCCCCcHHHH
Confidence 455667788774 5667999999987
No 90
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=70.09 E-value=1.8 Score=44.91 Aligned_cols=27 Identities=37% Similarity=0.571 Sum_probs=21.7
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
...+..++.|.+ ++..++||||||.+.
T Consensus 68 ~~~i~~~~~~~~--~lv~a~TGsGKT~~~ 94 (414)
T 3eiq_A 68 QRAILPCIKGYD--VIAQAQSGTGKTATF 94 (414)
T ss_dssp HHHHHHHHTTCC--EEECCCSCSSSHHHH
T ss_pred HHHhHHHhCCCC--EEEECCCCCcccHHH
Confidence 456677888988 577899999999873
No 91
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=70.00 E-value=18 Score=29.54 Aligned_cols=33 Identities=27% Similarity=0.328 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 439 LEEDMREAEAECQNVRNQIKEVESLLSEKKKLF 471 (630)
Q Consensus 439 L~~el~~l~~e~~~l~~qi~~~e~~l~e~~~~~ 471 (630)
|+..++...+|++.....|++++..+.|+...+
T Consensus 24 Lq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI 56 (72)
T 3nmd_A 24 LQYALQEKIEELRQRDALIDELELELDQKDELI 56 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444444444443333
No 92
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=69.68 E-value=2.2 Score=42.68 Aligned_cols=35 Identities=26% Similarity=0.384 Sum_probs=23.5
Q ss_pred ChhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 144 SQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 144 tQ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
.|+++...+..++. .|....++-||++|+|||++.
T Consensus 29 g~~~~~~~l~~~l~---~~~~~~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 29 GQEHIVKRLKHYVK---TGSMPHLLFAGPPGVGKTTAA 63 (327)
T ss_dssp SCHHHHHHHHHHHH---HTCCCEEEEESCTTSSHHHHH
T ss_pred CCHHHHHHHHHHHH---cCCCCeEEEECcCCCCHHHHH
Confidence 35666555544443 344334888999999999976
No 93
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=69.62 E-value=1.7 Score=42.30 Aligned_cols=27 Identities=33% Similarity=0.439 Sum_probs=19.3
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
..++..+..|.+ ++..|+||||||..+
T Consensus 67 ~~~i~~i~~g~~--~~i~g~TGsGKTt~~ 93 (235)
T 3llm_A 67 SEILEAISQNSV--VIIRGATGCGKTTQV 93 (235)
T ss_dssp HHHHHHHHHCSE--EEEECCTTSSHHHHH
T ss_pred HHHHHHHhcCCE--EEEEeCCCCCcHHhH
Confidence 445556666754 567799999999755
No 94
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=69.42 E-value=1.8 Score=42.62 Aligned_cols=27 Identities=30% Similarity=0.507 Sum_probs=20.0
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
...+..+++|.++ +..++||||||.+.
T Consensus 71 ~~~i~~i~~~~~~--lv~a~TGsGKT~~~ 97 (249)
T 3ber_A 71 IEAIPLALQGRDI--IGLAETGSGKTGAF 97 (249)
T ss_dssp HHHHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHHHhCCCCE--EEEcCCCCCchhHh
Confidence 3456667788774 55679999999874
No 95
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=67.93 E-value=1.8 Score=47.00 Aligned_cols=39 Identities=28% Similarity=0.470 Sum_probs=26.8
Q ss_pred CChhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 143 ASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 143 atQ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
..|+.+......+...+-.|.-..++-||++|+|||+..
T Consensus 29 vGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 29 IGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHH
T ss_pred CCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHH
Confidence 356666643344444444565568899999999999876
No 96
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=67.80 E-value=2.4 Score=42.89 Aligned_cols=35 Identities=23% Similarity=0.114 Sum_probs=22.9
Q ss_pred ChhhHHHhhHHHHHHhhcC-cceeEEecccCCCCcceee
Q 006826 144 SQEDVFVEVEPILRSALDG-HNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 144 tQ~eVf~~v~plV~svl~G-yN~~IfaYGqTGSGKTyTM 181 (630)
.|+++...+...+. .| ....++-||++|+|||+++
T Consensus 30 g~~~~~~~l~~~l~---~~~~~~~~L~~G~~G~GKT~la 65 (324)
T 3u61_B 30 LPAFDKETFKSITS---KGKIPHIILHSPSPGTGKTTVA 65 (324)
T ss_dssp CCHHHHHHHHHHHH---TTCCCSEEEECSSTTSSHHHHH
T ss_pred CcHHHHHHHHHHHH---cCCCCeEEEeeCcCCCCHHHHH
Confidence 44555544444444 34 3356788999999999987
No 97
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=67.68 E-value=1.1 Score=46.31 Aligned_cols=45 Identities=20% Similarity=0.330 Sum_probs=27.1
Q ss_pred EEeceeeCCCCChhhHHHhhHHHHH------HhhcCc---ceeEEecccCCCCcceee
Q 006826 133 FGFDKVFNQAASQEDVFVEVEPILR------SALDGH---NVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 133 F~FD~VF~~~atQ~eVf~~v~plV~------svl~Gy---N~~IfaYGqTGSGKTyTM 181 (630)
..||.|.+. +++-+.+...|. .++.|. ...|+-||++|+|||+..
T Consensus 9 ~~~~di~G~----~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 9 VKWSDVAGL----EGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCGGGSCSC----HHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCHHHhcCH----HHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 356666544 444444433332 233342 246889999999999876
No 98
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=67.48 E-value=3.5 Score=41.77 Aligned_cols=36 Identities=25% Similarity=0.302 Sum_probs=26.0
Q ss_pred hhHHHhhHHHHHHhhcCc-----ceeEEecccCCCCcceee
Q 006826 146 EDVFVEVEPILRSALDGH-----NVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 146 ~eVf~~v~plV~svl~Gy-----N~~IfaYGqTGSGKTyTM 181 (630)
+++...+..++..++.|+ ...|+..|++|||||+..
T Consensus 10 ~~~~~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 10 KQFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHH
Confidence 455555566777777654 356888999999999864
No 99
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=67.17 E-value=1.2 Score=42.37 Aligned_cols=27 Identities=44% Similarity=0.649 Sum_probs=20.0
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
...+..+++|.|+ +..++||||||.+.
T Consensus 32 ~~~i~~~~~~~~~--lv~a~TGsGKT~~~ 58 (219)
T 1q0u_A 32 ERIIPGALRGESM--VGQSQTGTGKTHAY 58 (219)
T ss_dssp HHHHHHHHHTCCE--EEECCSSHHHHHHH
T ss_pred HHHHHHHhCCCCE--EEECCCCChHHHHH
Confidence 3455667788775 56789999999873
No 100
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=66.88 E-value=2.8 Score=42.59 Aligned_cols=29 Identities=17% Similarity=0.216 Sum_probs=24.1
Q ss_pred HHHHHHhhcCc---ceeEEecccCCCCcceee
Q 006826 153 EPILRSALDGH---NVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 153 ~plV~svl~Gy---N~~IfaYGqTGSGKTyTM 181 (630)
...+..+++|. .-||+-||+.|+|||+..
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a 121 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIA 121 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHH
Confidence 55678888887 458999999999999876
No 101
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=66.35 E-value=2.5 Score=41.96 Aligned_cols=18 Identities=39% Similarity=0.444 Sum_probs=15.5
Q ss_pred ceeEEecccCCCCcceee
Q 006826 164 NVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 164 N~~IfaYGqTGSGKTyTM 181 (630)
...|+-||++|+|||++.
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456888999999999976
No 102
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=66.19 E-value=2.2 Score=43.73 Aligned_cols=41 Identities=37% Similarity=0.628 Sum_probs=25.6
Q ss_pred EeceeeCCCCChhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 134 GFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 134 ~FD~VF~~~atQ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
.|+.+++ |+++...+...|. .|.-..++-||+.|+|||+++
T Consensus 23 ~~~~~~g----~~~~~~~L~~~i~---~g~~~~~ll~Gp~G~GKTtla 63 (340)
T 1sxj_C 23 TLDEVYG----QNEVITTVRKFVD---EGKLPHLLFYGPPGTGKTSTI 63 (340)
T ss_dssp SGGGCCS----CHHHHHHHHHHHH---TTCCCCEEEECSSSSSHHHHH
T ss_pred cHHHhcC----cHHHHHHHHHHHh---cCCCceEEEECCCCCCHHHHH
Confidence 4555553 4555554443333 453223788999999999987
No 103
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=66.00 E-value=1.8 Score=42.59 Aligned_cols=28 Identities=32% Similarity=0.538 Sum_probs=20.7
Q ss_pred HHHHhhcCc--ceeEEecccCCCCcceeec
Q 006826 155 ILRSALDGH--NVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 155 lV~svl~Gy--N~~IfaYGqTGSGKTyTM~ 182 (630)
.+..++.|. .-+|+-||+.|+|||+...
T Consensus 47 ~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ 76 (212)
T 1tue_A 47 ALKSFLKGTPKKNCLVFCGPANTGKSYFGM 76 (212)
T ss_dssp HHHHHHHTCTTCSEEEEESCGGGCHHHHHH
T ss_pred HHHHHHhcCCcccEEEEECCCCCCHHHHHH
Confidence 345555663 3579999999999998863
No 104
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=65.64 E-value=2.5 Score=42.13 Aligned_cols=18 Identities=33% Similarity=0.586 Sum_probs=15.8
Q ss_pred ceeEEecccCCCCcceee
Q 006826 164 NVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 164 N~~IfaYGqTGSGKTyTM 181 (630)
...|+-||++|+|||+.+
T Consensus 54 ~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CSEEEEESSSSSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 567899999999999876
No 105
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=65.07 E-value=2.2 Score=44.39 Aligned_cols=27 Identities=37% Similarity=0.646 Sum_probs=20.8
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
...+..+++|.+ ++..++||||||.+.
T Consensus 65 ~~ai~~i~~~~~--~lv~a~TGsGKT~~~ 91 (410)
T 2j0s_A 65 QRAIKQIIKGRD--VIAQSQSGTGKTATF 91 (410)
T ss_dssp HHHHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHHHhCCCC--EEEECCCCCCchHHH
Confidence 345667788887 567789999999764
No 106
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=65.03 E-value=2.3 Score=42.28 Aligned_cols=46 Identities=26% Similarity=0.314 Sum_probs=27.5
Q ss_pred EEEeceeeCCCCChhhHHHhhHHHHHHh-----hcCc----ceeEEecccCCCCcceee
Q 006826 132 EFGFDKVFNQAASQEDVFVEVEPILRSA-----LDGH----NVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 132 ~F~FD~VF~~~atQ~eVf~~v~plV~sv-----l~Gy----N~~IfaYGqTGSGKTyTM 181 (630)
.++||.|.+. +++..++..++..+ +.+. ...|+-||++|+|||+.+
T Consensus 36 ~~~~~~i~g~----~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 36 KVTFKDVAGA----EEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCCGGGSSSC----HHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCCHHHhCCh----HHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 4677776654 34444443333322 2221 223899999999999987
No 107
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=64.88 E-value=2.5 Score=43.97 Aligned_cols=45 Identities=24% Similarity=0.363 Sum_probs=28.0
Q ss_pred EEeceeeCCCCChhhHHHhhHHHHHHh---------hcCcceeEEecccCCCCcceee
Q 006826 133 FGFDKVFNQAASQEDVFVEVEPILRSA---------LDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 133 F~FD~VF~~~atQ~eVf~~v~plV~sv---------l~GyN~~IfaYGqTGSGKTyTM 181 (630)
..||.|.+ ++++...+..+|... +.+....|+-||++|+|||+.+
T Consensus 81 ~~~~~i~G----~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 81 VNWEDIAG----VEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CCGGGSCS----CHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHH
T ss_pred CCHHHhCC----hHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHH
Confidence 35666654 445554443333321 2344567899999999999876
No 108
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=64.85 E-value=2.4 Score=43.73 Aligned_cols=29 Identities=34% Similarity=0.358 Sum_probs=22.2
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
...+..++.|.+..++..++||||||.+.
T Consensus 53 ~~~i~~~~~~~~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 53 ENALPLMLAEPPQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp HHHHHHHHSSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHHHhcCCCCeEEEECCCCchHHHHH
Confidence 45667777875556788899999999873
No 109
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=64.03 E-value=3.3 Score=42.40 Aligned_cols=37 Identities=27% Similarity=0.247 Sum_probs=23.9
Q ss_pred CChhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 143 ASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 143 atQ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
..|+++...+...+.. ......++-||+.|+|||+++
T Consensus 19 vg~~~~~~~L~~~l~~--~~~~~~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 19 VGQEHVLTALANGLSL--GRIHHAYLFSGTRGVGKTSIA 55 (373)
T ss_dssp CSCHHHHHHHHHHHHH--TCCCSEEEEESCTTSSHHHHH
T ss_pred cCcHHHHHHHHHHHHh--CCCCeEEEEECCCCCCHHHHH
Confidence 3455555555444432 223446889999999999886
No 110
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=63.04 E-value=2.6 Score=41.29 Aligned_cols=26 Identities=27% Similarity=0.126 Sum_probs=19.1
Q ss_pred HHHHhhcCcceeEEecccCCCCcceeec
Q 006826 155 ILRSALDGHNVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 155 lV~svl~GyN~~IfaYGqTGSGKTyTM~ 182 (630)
.+..++++.+ ++.+|+||+|||+...
T Consensus 101 ai~~~~~~~~--~ll~~~tG~GKT~~a~ 126 (237)
T 2fz4_A 101 ALERWLVDKR--GCIVLPTGSGKTHVAM 126 (237)
T ss_dssp HHHHHTTTSE--EEEEESSSTTHHHHHH
T ss_pred HHHHHHhCCC--EEEEeCCCCCHHHHHH
Confidence 4455667766 5667899999999863
No 111
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=63.00 E-value=1.5 Score=43.80 Aligned_cols=21 Identities=38% Similarity=0.365 Sum_probs=16.6
Q ss_pred cCcceeEEecccCCCCcceee
Q 006826 161 DGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 161 ~GyN~~IfaYGqTGSGKTyTM 181 (630)
.|....++-||+.|+|||++.
T Consensus 35 ~~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 35 RKNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp TTCCCCEEEESSSSSSHHHHH
T ss_pred CCCCCeEEEECcCCcCHHHHH
Confidence 354444899999999999876
No 112
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=62.86 E-value=2.8 Score=42.81 Aligned_cols=29 Identities=34% Similarity=0.366 Sum_probs=21.5
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
...+..++.|..-.++..++||||||.+.
T Consensus 33 ~~~i~~~~~~~~~~~lv~a~TGsGKT~~~ 61 (395)
T 3pey_A 33 ERALPLLLHNPPRNMIAQSQSGTGKTAAF 61 (395)
T ss_dssp HHHHHHHHCSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHHHHcCCCCeEEEECCCCCcHHHHH
Confidence 34566777884455678899999999864
No 113
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=62.62 E-value=2.4 Score=42.50 Aligned_cols=19 Identities=37% Similarity=0.527 Sum_probs=15.8
Q ss_pred cceeEEecccCCCCcceee
Q 006826 163 HNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 163 yN~~IfaYGqTGSGKTyTM 181 (630)
-...+.-.|+||||||.++
T Consensus 24 ~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp SSEEEEEECSTTCSHHHHH
T ss_pred CCCEEEEECCCCccHHHHH
Confidence 3456778899999999998
No 114
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=62.03 E-value=2.7 Score=41.95 Aligned_cols=26 Identities=35% Similarity=0.517 Sum_probs=19.4
Q ss_pred HHHHHhhcCcceeEEecccCCCCcceee
Q 006826 154 PILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 154 plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
..+..+++|.+ ++..++||||||.+.
T Consensus 23 ~~i~~i~~~~~--~lv~~~TGsGKT~~~ 48 (337)
T 2z0m_A 23 KTIPLMLQGKN--VVVRAKTGSGKTAAY 48 (337)
T ss_dssp HHHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHHhcCCC--EEEEcCCCCcHHHHH
Confidence 45566677876 466689999999865
No 115
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=61.98 E-value=0.95 Score=45.65 Aligned_cols=49 Identities=18% Similarity=0.317 Sum_probs=23.8
Q ss_pred EEeceeeCCCCChhhHHHhh-HHHHH-HhhcCcc----eeEEecccCCCCcceee
Q 006826 133 FGFDKVFNQAASQEDVFVEV-EPILR-SALDGHN----VCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 133 F~FD~VF~~~atQ~eVf~~v-~plV~-svl~GyN----~~IfaYGqTGSGKTyTM 181 (630)
.+||.|-+.+...+++.+.+ .|+-. .++++++ ..|+-||+.|+|||+.+
T Consensus 7 ~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp -----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 46666655443333343332 33221 1233222 22889999999999876
No 116
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=61.87 E-value=3.3 Score=44.41 Aligned_cols=28 Identities=36% Similarity=0.351 Sum_probs=22.0
Q ss_pred HHHHHHhhcCcceeEEecccCCCCccee
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFT 180 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyT 180 (630)
...+..++.|.+-.+++.|+||||||..
T Consensus 120 ~~ai~~il~~~~~~~l~~a~TGsGKT~~ 147 (479)
T 3fmp_B 120 ENALPLMLAEPPQNLIAQSQSGTGKTAA 147 (479)
T ss_dssp HHHHHHHTSBSCCEEEEECCSSSSHHHH
T ss_pred HHHHHHHHcCCCCcEEEEcCCCCchhHH
Confidence 3456667777666789999999999977
No 117
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=61.78 E-value=32 Score=26.91 Aligned_cols=40 Identities=13% Similarity=0.147 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 432 REIRMAELEEDMREAEAECQNVRNQIKEVESLLSEKKKLF 471 (630)
Q Consensus 432 ~~~~i~~L~~el~~l~~e~~~l~~qi~~~e~~l~e~~~~~ 471 (630)
+...+.+|+.+...++.++..|+.++..++.++......+
T Consensus 21 Kk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 21 RRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778888888888888888888877776665554443
No 118
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=61.53 E-value=2.8 Score=43.32 Aligned_cols=27 Identities=37% Similarity=0.609 Sum_probs=20.4
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
...+..++.|.+ ++..++||||||.+.
T Consensus 49 ~~~i~~i~~~~~--~li~a~TGsGKT~~~ 75 (400)
T 1s2m_A 49 EEAIPVAITGRD--ILARAKNGTGKTAAF 75 (400)
T ss_dssp HHHHHHHHHTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHHhcCCC--EEEECCCCcHHHHHH
Confidence 345666778877 567789999999764
No 119
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=60.55 E-value=1.7 Score=44.47 Aligned_cols=15 Identities=47% Similarity=0.778 Sum_probs=13.9
Q ss_pred EEecccCCCCcceee
Q 006826 167 VLAYGQTGTGKTFTM 181 (630)
Q Consensus 167 IfaYGqTGSGKTyTM 181 (630)
++-||+.|+|||+++
T Consensus 39 ~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRC 53 (354)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999987
No 120
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=60.27 E-value=48 Score=27.17 Aligned_cols=50 Identities=22% Similarity=0.249 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhc
Q 006826 435 RMAELEEDMREAEAECQNVRNQIKEVESLLSEKKKLFSAACQSLEDEEKS 484 (630)
Q Consensus 435 ~i~~L~~el~~l~~e~~~l~~qi~~~e~~l~e~~~~~~~~~~~l~~e~~~ 484 (630)
.+...+......+.++..|+..+..++..++..+..+......|+.+.+.
T Consensus 28 ~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek~ 77 (81)
T 1ic2_A 28 DKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADKK 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455556666677777777777777766666666666666666543
No 121
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=60.05 E-value=3.1 Score=43.17 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=19.7
Q ss_pred HHHHHhhcCcceeEEecccCCCCcceee
Q 006826 154 PILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 154 plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
..+..+++|.|+ +..++||||||.+.
T Consensus 44 ~~i~~i~~~~~~--lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 44 HAIPIIKEKRDL--MACAQTGSGKTAAF 69 (417)
T ss_dssp HHHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHHccCCCE--EEEcCCCCHHHHHH
Confidence 445667788875 56789999999764
No 122
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=59.73 E-value=3.4 Score=45.73 Aligned_cols=27 Identities=33% Similarity=0.447 Sum_probs=18.5
Q ss_pred HHHHhhcCcceeEEecccCCCCcceeec
Q 006826 155 ILRSALDGHNVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 155 lV~svl~GyN~~IfaYGqTGSGKTyTM~ 182 (630)
+++.+..|.+-++++ ++||||||.++.
T Consensus 190 ~~~~~~~~~~~~ll~-~~TGsGKT~~~~ 216 (590)
T 3h1t_A 190 AVQSVLQGKKRSLIT-MATGTGKTVVAF 216 (590)
T ss_dssp HHHHHHTTCSEEEEE-ECTTSCHHHHHH
T ss_pred HHHHHhcCCCceEEE-ecCCCChHHHHH
Confidence 334444476655555 899999999974
No 123
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=59.48 E-value=3.4 Score=42.17 Aligned_cols=17 Identities=41% Similarity=0.798 Sum_probs=14.9
Q ss_pred eeEEecccCCCCcceee
Q 006826 165 VCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM 181 (630)
..|+-||++|+|||+..
T Consensus 52 ~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CEEEEECSSSSCHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 46899999999999875
No 124
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=59.43 E-value=4.4 Score=41.30 Aligned_cols=35 Identities=20% Similarity=0.275 Sum_probs=23.7
Q ss_pred hhHHHhhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 146 EDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 146 ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
...+..+...+..+. ..+..|+-||++|+|||+..
T Consensus 8 s~~~~~~~~~~~~~a-~~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 8 SPAMQHLLNEIAMVA-PSDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp SHHHHHHHHHHHHHC-STTSCEEEESCTTSCHHHHH
T ss_pred CHHHHHHHHHHHHHh-CCCCcEEEECCCCchHHHHH
Confidence 344444544555544 44677899999999999864
No 125
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=59.35 E-value=3.8 Score=42.82 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=20.2
Q ss_pred HHHHHHhhcCcceeEEecccCCCCccee
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFT 180 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyT 180 (630)
...+..+++|.| ++..++||||||..
T Consensus 27 ~~~i~~i~~~~~--~lv~apTGsGKT~~ 52 (414)
T 3oiy_A 27 RLWAKRIVQGKS--FTMVAPTGVGKTTF 52 (414)
T ss_dssp HHHHHHHTTTCC--EECCSCSSSSHHHH
T ss_pred HHHHHHHhcCCC--EEEEeCCCCCHHHH
Confidence 345667778876 57888999999984
No 126
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=59.17 E-value=3.2 Score=42.13 Aligned_cols=29 Identities=31% Similarity=0.426 Sum_probs=20.1
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
..+...+..|....++-||++|+|||+++
T Consensus 47 ~~l~~~l~~~~~~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 47 TVLKKTLKSANLPHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp HHHHHHTTCTTCCCEEEECSTTSSHHHHH
T ss_pred HHHHHHHhcCCCCEEEEECCCCCCHHHHH
Confidence 33444444553334888999999999987
No 127
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=59.14 E-value=3.2 Score=46.92 Aligned_cols=28 Identities=32% Similarity=0.381 Sum_probs=19.8
Q ss_pred HHHHHhhcCcceeEEecccCCCCcceeec
Q 006826 154 PILRSALDGHNVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 154 plV~svl~GyN~~IfaYGqTGSGKTyTM~ 182 (630)
..|..++.....+ +-.|+.|||||+|+.
T Consensus 196 ~AV~~al~~~~~~-lI~GPPGTGKT~ti~ 223 (646)
T 4b3f_X 196 EAVLFALSQKELA-IIHGPPGTGKTTTVV 223 (646)
T ss_dssp HHHHHHHHCSSEE-EEECCTTSCHHHHHH
T ss_pred HHHHHHhcCCCce-EEECCCCCCHHHHHH
Confidence 3566666544444 566999999999974
No 128
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=59.00 E-value=4.4 Score=41.69 Aligned_cols=44 Identities=32% Similarity=0.332 Sum_probs=26.5
Q ss_pred EeceeeCCCCChhhHHHhhHHHHHHhh-cC-cceeEEecccCCCCcceee
Q 006826 134 GFDKVFNQAASQEDVFVEVEPILRSAL-DG-HNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 134 ~FD~VF~~~atQ~eVf~~v~plV~svl-~G-yN~~IfaYGqTGSGKTyTM 181 (630)
.||.+++ |+.+...+.-.|.... .| .--.++-||++|+|||+.+
T Consensus 23 ~l~~~~g----~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 23 SLDEFIG----QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp SGGGCCS----CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHH
T ss_pred cHHHccC----cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHH
Confidence 4565554 4555555544444331 12 2134677999999999987
No 129
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=58.38 E-value=41 Score=26.43 Aligned_cols=38 Identities=13% Similarity=0.225 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 434 IRMAELEEDMREAEAECQNVRNQIKEVESLLSEKKKLF 471 (630)
Q Consensus 434 ~~i~~L~~el~~l~~e~~~l~~qi~~~e~~l~e~~~~~ 471 (630)
..+.+|+.+..+++.++..|+.++..++.++...+.++
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777777766665554443
No 130
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=57.24 E-value=3.8 Score=40.80 Aligned_cols=35 Identities=23% Similarity=0.395 Sum_probs=22.0
Q ss_pred ChhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 144 SQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 144 tQ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
.|+++...+...+ -.|.-..++-||+.|+|||++.
T Consensus 25 g~~~~~~~l~~~l---~~~~~~~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 25 GNKETIDRLQQIA---KDGNMPHMIISGMPGIGKTTSV 59 (323)
T ss_dssp SCTHHHHHHHHHH---HSCCCCCEEEECSTTSSHHHHH
T ss_pred CCHHHHHHHHHHH---HcCCCCeEEEECcCCCCHHHHH
Confidence 3445544443333 3343333889999999999876
No 131
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=57.11 E-value=2.7 Score=41.88 Aligned_cols=26 Identities=12% Similarity=0.111 Sum_probs=18.1
Q ss_pred HHHHHhhcCcceeEEecccCCCCcceee
Q 006826 154 PILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 154 plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
..+..++.|.++ +..++||||||.+.
T Consensus 120 ~ai~~~l~~~~~--ll~~~tGsGKT~~~ 145 (282)
T 1rif_A 120 DAVFEGLVNRRR--ILNLPTSAGRSLIQ 145 (282)
T ss_dssp HHHHHHHHHSEE--EECCCTTSCHHHHH
T ss_pred HHHHHHHhcCCe--EEEcCCCCCcHHHH
Confidence 344555656554 33899999999886
No 132
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=56.26 E-value=2.6 Score=49.35 Aligned_cols=42 Identities=21% Similarity=0.424 Sum_probs=28.2
Q ss_pred EeceeeCCCCChhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceeec
Q 006826 134 GFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 134 ~FD~VF~~~atQ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM~ 182 (630)
.||.|++. ++ ++..+++.+..+....++-||++|+|||+.+.
T Consensus 168 ~ld~viGr----~~---~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~ 209 (854)
T 1qvr_A 168 KLDPVIGR----DE---EIRRVIQILLRRTKNNPVLIGEPGVGKTAIVE 209 (854)
T ss_dssp CSCCCCSC----HH---HHHHHHHHHHCSSCCCCEEEECTTSCHHHHHH
T ss_pred CCcccCCc----HH---HHHHHHHHHhcCCCCceEEEcCCCCCHHHHHH
Confidence 55655543 32 34555555556666667889999999999874
No 133
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=56.09 E-value=3.9 Score=41.85 Aligned_cols=27 Identities=30% Similarity=0.456 Sum_probs=20.4
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
...+..++.|.+ ++..++||||||.+.
T Consensus 36 ~~~i~~~~~~~~--~lv~a~TGsGKT~~~ 62 (391)
T 1xti_A 36 HECIPQAILGMD--VLCQAKSGMGKTAVF 62 (391)
T ss_dssp HHHHHHHTTTCC--EEEECSSCSSHHHHH
T ss_pred HHHHHHHhcCCc--EEEECCCCCcHHHHH
Confidence 345677788877 466679999999864
No 134
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=56.04 E-value=4.5 Score=42.46 Aligned_cols=46 Identities=22% Similarity=0.305 Sum_probs=28.4
Q ss_pred EEEeceeeCCCCChhhHHHhhHHHHHHhh------c---CcceeEEecccCCCCcceee
Q 006826 132 EFGFDKVFNQAASQEDVFVEVEPILRSAL------D---GHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 132 ~F~FD~VF~~~atQ~eVf~~v~plV~svl------~---GyN~~IfaYGqTGSGKTyTM 181 (630)
.+.||.|.+. +.+-+.+..+|...+ . .-...|+-||++|+|||+..
T Consensus 111 ~~~~~~iiG~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 111 AVKFDDIAGQ----DLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CCCGGGSCSC----HHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHH
T ss_pred CCChHHhCCH----HHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHH
Confidence 4678887764 444444433332211 2 22357899999999999865
No 135
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=55.93 E-value=42 Score=26.01 Aligned_cols=37 Identities=8% Similarity=0.227 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 433 EIRMAELEEDMREAEAECQNVRNQIKEVESLLSEKKK 469 (630)
Q Consensus 433 ~~~i~~L~~el~~l~~e~~~l~~qi~~~e~~l~e~~~ 469 (630)
...+.+|+.+...++.++..|+.++..++.++...+.
T Consensus 21 k~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 21 KVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457778888888888888888877777766654443
No 136
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=55.65 E-value=3.3 Score=45.50 Aligned_cols=44 Identities=18% Similarity=0.289 Sum_probs=28.2
Q ss_pred EeceeeCCCCChhhHHHhhHHHHHHhh----cC----------cceeEEecccCCCCcceee
Q 006826 134 GFDKVFNQAASQEDVFVEVEPILRSAL----DG----------HNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 134 ~FD~VF~~~atQ~eVf~~v~plV~svl----~G----------yN~~IfaYGqTGSGKTyTM 181 (630)
.||.+.+ |+.+...+...+.... .| ....++-||++|+|||++.
T Consensus 37 ~~~dliG----~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 37 NLQQVCG----NKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp SGGGCCS----CHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHH
T ss_pred CHHHhcC----CHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHH
Confidence 4555543 4555555555555432 11 2357888999999999886
No 137
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=54.53 E-value=70 Score=29.06 Aligned_cols=42 Identities=10% Similarity=0.120 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006826 435 RMAELEEDMREAEAECQNVRNQIKEVESLLSEKKKLFSAACQ 476 (630)
Q Consensus 435 ~i~~L~~el~~l~~e~~~l~~qi~~~e~~l~e~~~~~~~~~~ 476 (630)
....|+.++.++..|+..|+.++..++..+++..+.+.....
T Consensus 76 ~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~ 117 (138)
T 3hnw_A 76 MADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKS 117 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666655555555554444333
No 138
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=54.48 E-value=5.6 Score=45.69 Aligned_cols=38 Identities=32% Similarity=0.397 Sum_probs=27.7
Q ss_pred ChhhHHHhhHHHHHHhhcCcc------eeEEecccCCCCcceee
Q 006826 144 SQEDVFVEVEPILRSALDGHN------VCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 144 tQ~eVf~~v~plV~svl~GyN------~~IfaYGqTGSGKTyTM 181 (630)
.|.++...+...|..+..|.. ..|+-||++|+|||++.
T Consensus 495 Gq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 495 GQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELA 538 (758)
T ss_dssp SCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHH
Confidence 456666666666666665554 26899999999999876
No 139
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=54.27 E-value=4.2 Score=44.95 Aligned_cols=19 Identities=32% Similarity=0.531 Sum_probs=15.9
Q ss_pred cCcceeEEecccCCCCcceee
Q 006826 161 DGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 161 ~GyN~~IfaYGqTGSGKTyTM 181 (630)
.|.+ |...|+||||||.||
T Consensus 259 ~g~~--i~I~GptGSGKTTlL 277 (511)
T 2oap_1 259 HKFS--AIVVGETASGKTTTL 277 (511)
T ss_dssp TTCC--EEEEESTTSSHHHHH
T ss_pred CCCE--EEEECCCCCCHHHHH
Confidence 5666 667899999999987
No 140
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=53.23 E-value=4.7 Score=41.72 Aligned_cols=18 Identities=39% Similarity=0.602 Sum_probs=15.2
Q ss_pred ceeEEecccCCCCcceee
Q 006826 164 NVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 164 N~~IfaYGqTGSGKTyTM 181 (630)
...|+-||++|+|||+..
T Consensus 51 ~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 456888999999999875
No 141
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=53.16 E-value=4.6 Score=44.04 Aligned_cols=26 Identities=31% Similarity=0.360 Sum_probs=19.4
Q ss_pred HHHhhcCcceeEEecccCCCCcceee
Q 006826 156 LRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 156 V~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
+..++.|.+-.++..++||||||.+.
T Consensus 150 i~~i~~~~~~~~ll~apTGsGKT~~~ 175 (508)
T 3fho_A 150 LPLLLSNPPRNMIGQSQSGTGKTAAF 175 (508)
T ss_dssp HHHHHCSSCCCEEEECCSSTTSHHHH
T ss_pred HHHHHcCCCCCEEEECCCCccHHHHH
Confidence 45566774455688899999999873
No 142
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=52.94 E-value=3.3 Score=45.51 Aligned_cols=20 Identities=40% Similarity=0.587 Sum_probs=16.5
Q ss_pred CcceeEEecccCCCCcceee
Q 006826 162 GHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 162 GyN~~IfaYGqTGSGKTyTM 181 (630)
.....|+-||++|+|||+..
T Consensus 236 ~~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHH
T ss_pred CCCCcEEEECcCCCCHHHHH
Confidence 34567899999999999865
No 143
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=52.82 E-value=5 Score=43.21 Aligned_cols=26 Identities=38% Similarity=0.680 Sum_probs=19.9
Q ss_pred HHHHHhhcCcceeEEecccCCCCcceee
Q 006826 154 PILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 154 plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
..|..++.|.| ++..++||||||.+.
T Consensus 14 ~~i~~~~~~~~--~l~~~~tGsGKT~~~ 39 (556)
T 4a2p_A 14 ELAQPAINGKN--ALICAPTGSGKTFVS 39 (556)
T ss_dssp HHHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHHcCCC--EEEEcCCCChHHHHH
Confidence 45566778877 466789999999874
No 144
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=52.35 E-value=77 Score=28.09 Aligned_cols=33 Identities=9% Similarity=0.257 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 440 EEDMREAEAECQNVRNQIKEVESLLSEKKKLFS 472 (630)
Q Consensus 440 ~~el~~l~~e~~~l~~qi~~~e~~l~e~~~~~~ 472 (630)
++++.+++.||..|..++++..+.+++..+...
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 445666666666666666666665555544443
No 145
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=52.19 E-value=5.3 Score=41.60 Aligned_cols=17 Identities=41% Similarity=0.798 Sum_probs=14.7
Q ss_pred eeEEecccCCCCcceee
Q 006826 165 VCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM 181 (630)
..|+-||++|+|||+..
T Consensus 85 ~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCEEEECSTTSCHHHHH
T ss_pred ceEEEECCCCCcHHHHH
Confidence 45888999999999875
No 146
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=52.04 E-value=4.5 Score=42.63 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=18.7
Q ss_pred HHHhhcCcceeEEecccCCCCcceee
Q 006826 156 LRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 156 V~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
+..+.-.....|...|+||||||.+|
T Consensus 128 l~~l~~~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 128 VLELCHRKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp HHHHTTSSSEEEEEECSSSSSHHHHH
T ss_pred HHHHhhcCCCEEEEECCCCCCHHHHH
Confidence 33333333456788899999999998
No 147
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=51.58 E-value=4.7 Score=41.89 Aligned_cols=18 Identities=39% Similarity=0.615 Sum_probs=15.5
Q ss_pred ceeEEecccCCCCcceee
Q 006826 164 NVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 164 N~~IfaYGqTGSGKTyTM 181 (630)
...|+-||++|+|||++.
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 456899999999999875
No 148
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=51.49 E-value=3.4 Score=42.30 Aligned_cols=27 Identities=44% Similarity=0.668 Sum_probs=20.2
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
...+..++.|.+ ++..++||||||.+.
T Consensus 49 ~~~i~~i~~~~~--~lv~~~TGsGKT~~~ 75 (394)
T 1fuu_A 49 QRAIMPIIEGHD--VLAQAQSGTGKTGTF 75 (394)
T ss_dssp HHHHHHHHHTCC--EEECCCSSHHHHHHH
T ss_pred HHHHHHHhCCCC--EEEECCCCChHHHHH
Confidence 345666778877 466789999999873
No 149
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=51.40 E-value=6.5 Score=41.82 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=20.4
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
...+..++.|.+ +++.++||||||.+.
T Consensus 84 ~~ai~~i~~g~d--~i~~a~TGsGKT~a~ 110 (434)
T 2db3_A 84 KCSIPVISSGRD--LMACAQTGSGKTAAF 110 (434)
T ss_dssp HHHHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHHHhcCCC--EEEECCCCCCchHHH
Confidence 345666788877 467779999999863
No 150
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=51.39 E-value=17 Score=34.59 Aligned_cols=21 Identities=19% Similarity=0.167 Sum_probs=17.2
Q ss_pred CchhhHHHhhcCccccccccc
Q 006826 487 SPKENLKEAAETPKASKNVTK 507 (630)
Q Consensus 487 ~~~~~l~~~~~~~~~~~~~~~ 507 (630)
+...+|.+++++|..+....+
T Consensus 66 ~~~PhLvnLn~Dp~ls~~l~y 86 (184)
T 4egx_A 66 KKTPHLVNLNEDPLMSECLLY 86 (184)
T ss_dssp SSSCEEEECCCCTTCSSCSEE
T ss_pred CCCceEEeccCCcccCceEEE
Confidence 456899999999998887666
No 151
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=51.12 E-value=9.1 Score=39.72 Aligned_cols=18 Identities=33% Similarity=0.523 Sum_probs=15.3
Q ss_pred ceeEEecccCCCCcceee
Q 006826 164 NVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 164 N~~IfaYGqTGSGKTyTM 181 (630)
...|.-.|++|||||.|+
T Consensus 129 g~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 356778899999999988
No 152
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=50.97 E-value=7.2 Score=44.65 Aligned_cols=38 Identities=26% Similarity=0.306 Sum_probs=26.0
Q ss_pred ChhhHHHhhHHHHHHhhcCcc------eeEEecccCCCCcceee
Q 006826 144 SQEDVFVEVEPILRSALDGHN------VCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 144 tQ~eVf~~v~plV~svl~GyN------~~IfaYGqTGSGKTyTM 181 (630)
.|+++-..+...+.....|.. ..++-||++|+|||++.
T Consensus 462 g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 462 GQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVT 505 (758)
T ss_dssp SCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHH
Confidence 345555555455555555543 47899999999999876
No 153
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=50.81 E-value=79 Score=26.31 Aligned_cols=56 Identities=5% Similarity=0.217 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhHHHhhhcc
Q 006826 430 KRREIRMAELEEDMREAEAECQNVRNQIKEVESLLSEKKK---LFSAACQSLEDEEKSF 485 (630)
Q Consensus 430 ~~~~~~i~~L~~el~~l~~e~~~l~~qi~~~e~~l~e~~~---~~~~~~~~l~~e~~~~ 485 (630)
...+.+|+..-..|.-++.|+..|+.+...+....++... .+....+.+..+...|
T Consensus 9 eqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~w 67 (81)
T 2jee_A 9 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGW 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555555444443333222 2333334455555333
No 154
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=50.65 E-value=7 Score=45.65 Aligned_cols=38 Identities=32% Similarity=0.376 Sum_probs=26.7
Q ss_pred ChhhHHHhhHHHHHHhhcCcc------eeEEecccCCCCcceee
Q 006826 144 SQEDVFVEVEPILRSALDGHN------VCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 144 tQ~eVf~~v~plV~svl~GyN------~~IfaYGqTGSGKTyTM 181 (630)
.|..+...+...|..+..|.. ..|+-||++|+|||++.
T Consensus 562 G~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 562 GQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELA 605 (854)
T ss_dssp SCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHH
T ss_pred CcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHH
Confidence 345555566556666655532 57899999999999876
No 155
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=50.46 E-value=5.8 Score=42.56 Aligned_cols=26 Identities=35% Similarity=0.506 Sum_probs=19.4
Q ss_pred HHHHHhhcCcceeEEecccCCCCcceee
Q 006826 154 PILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 154 plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
..+..++.|.|+ +..++||||||.+.
T Consensus 11 ~~i~~~~~~~~~--l~~~~tGsGKT~~~ 36 (555)
T 3tbk_A 11 ELALPAKKGKNT--IICAPTGCGKTFVS 36 (555)
T ss_dssp HHHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHHhCCCCE--EEEeCCCChHHHHH
Confidence 445666788774 66689999999874
No 156
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=50.39 E-value=3.5 Score=41.88 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=17.1
Q ss_pred HHhhcCcceeEEecccCCCCcceee
Q 006826 157 RSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 157 ~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
..+..|. .|+-||++|+|||+.+
T Consensus 41 ~~l~~~~--~vll~G~pGtGKT~la 63 (331)
T 2r44_A 41 IGICTGG--HILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHTC--CEEEESCCCHHHHHHH
T ss_pred HHHHcCC--eEEEECCCCCcHHHHH
Confidence 3334443 5788999999999976
No 157
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=50.33 E-value=25 Score=27.77 Aligned_cols=35 Identities=23% Similarity=0.434 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 431 RREIRMAELEEDMREAEAECQNVRNQIKEVESLLS 465 (630)
Q Consensus 431 ~~~~~i~~L~~el~~l~~e~~~l~~qi~~~e~~l~ 465 (630)
.++..+.+|+.++..|+.++..|..++..+.+++.
T Consensus 27 RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 27 RKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566778888888888888888877777666543
No 158
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=50.32 E-value=8.3 Score=39.44 Aligned_cols=17 Identities=29% Similarity=0.581 Sum_probs=14.8
Q ss_pred eeEEecccCCCCcceee
Q 006826 165 VCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM 181 (630)
..|.-.|++|||||.|+
T Consensus 101 ~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 36778899999999998
No 159
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=50.13 E-value=5.1 Score=40.32 Aligned_cols=27 Identities=26% Similarity=0.431 Sum_probs=18.9
Q ss_pred HHHHHhhcCcceeEEecccCCCCcceee
Q 006826 154 PILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 154 plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
..+..++.|.. .++..++||||||.+.
T Consensus 35 ~~i~~~~~~~~-~~l~~~~TGsGKT~~~ 61 (367)
T 1hv8_A 35 KVIPLFLNDEY-NIVAQARTGSGKTASF 61 (367)
T ss_dssp HHHHHHHHTCS-EEEEECCSSSSHHHHH
T ss_pred HHHHHHhCCCC-CEEEECCCCChHHHHH
Confidence 44566677742 3466789999999874
No 160
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=49.69 E-value=28 Score=28.04 Aligned_cols=35 Identities=31% Similarity=0.525 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 430 KRREIRMAELEEDMREAEAECQNVRNQIKEVESLL 464 (630)
Q Consensus 430 ~~~~~~i~~L~~el~~l~~e~~~l~~qi~~~e~~l 464 (630)
..++.+|.+|+.++....++++.|+.++.+.+.-+
T Consensus 21 ~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl 55 (67)
T 1zxa_A 21 MLKEERIKELEKRLSEKEEEIQELKRKLHKCQSVL 55 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34556677777777777777777776666655433
No 161
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=49.62 E-value=7.7 Score=42.36 Aligned_cols=28 Identities=36% Similarity=0.574 Sum_probs=21.1
Q ss_pred HHHHHHhhcCcceeEEecccCCCCccee
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFT 180 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyT 180 (630)
...|..++.|.+--+++.++||||||.+
T Consensus 100 ~~~i~~~l~~~~~~~lv~apTGsGKTl~ 127 (563)
T 3i5x_A 100 QKTIKPILSSEDHDVIARAKTGTGKTFA 127 (563)
T ss_dssp HHHHHHHHSSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHHHhcCCCCeEEEECCCCCCccHH
Confidence 4566677755555668889999999986
No 162
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=49.57 E-value=5.9 Score=42.91 Aligned_cols=30 Identities=17% Similarity=0.252 Sum_probs=21.0
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceeec
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM~ 182 (630)
..+++.+..+....++-||++|+|||+...
T Consensus 190 ~~l~~~l~r~~~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 190 QRVIEVLSRRTKNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp HHHHHHHHCSSSCEEEEESCTTTTTHHHHH
T ss_pred HHHHHHHhccCCCCeEEECCCCCCHHHHHH
Confidence 344444444555567889999999999874
No 163
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=49.49 E-value=5.7 Score=37.86 Aligned_cols=28 Identities=29% Similarity=0.291 Sum_probs=21.4
Q ss_pred HHHHHhhcC-c--ceeEEecccCCCCcceee
Q 006826 154 PILRSALDG-H--NVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 154 plV~svl~G-y--N~~IfaYGqTGSGKTyTM 181 (630)
+-++.++.| . ...+.-+|++|||||..+
T Consensus 11 ~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~ 41 (243)
T 1n0w_A 11 KELDKLLQGGIETGSITEMFGEFRTGKTQIC 41 (243)
T ss_dssp HHHHHHTTTSEETTSEEEEECCTTSSHHHHH
T ss_pred hHHHHhhcCCCcCCeEEEEECCCCCcHHHHH
Confidence 457777854 3 446778999999999886
No 164
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=49.22 E-value=50 Score=30.05 Aligned_cols=35 Identities=9% Similarity=0.145 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 435 RMAELEEDMREAEAECQNVRNQIKEVESLLSEKKK 469 (630)
Q Consensus 435 ~i~~L~~el~~l~~e~~~l~~qi~~~e~~l~e~~~ 469 (630)
++.++.+++..+..++..++.+++.++..+++.++
T Consensus 83 ~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~ 117 (138)
T 3hnw_A 83 DIENKDKEIYDLKHELIAAQIKAESSAKEIKELKS 117 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555554444444444444443333
No 165
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=48.88 E-value=6.2 Score=42.05 Aligned_cols=26 Identities=27% Similarity=0.157 Sum_probs=19.2
Q ss_pred HHHHHhhcCcceeEEecccCCCCcceee
Q 006826 154 PILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 154 plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
..|..++.|.+ ++..|+||||||.+.
T Consensus 100 ~ai~~i~~~~~--~ll~~~TGsGKT~~~ 125 (472)
T 2fwr_A 100 KALERWLVDKR--GCIVLPTGSGKTHVA 125 (472)
T ss_dssp HHHHHHTTTTE--EEEECCTTSCHHHHH
T ss_pred HHHHHHHhcCC--EEEEeCCCCCHHHHH
Confidence 44556667755 566789999999985
No 166
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=48.79 E-value=5.3 Score=43.03 Aligned_cols=46 Identities=20% Similarity=0.317 Sum_probs=27.7
Q ss_pred EEEeceeeCCCCChhhHHHhhHHHHH------HhhcC---cceeEEecccCCCCcceee
Q 006826 132 EFGFDKVFNQAASQEDVFVEVEPILR------SALDG---HNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 132 ~F~FD~VF~~~atQ~eVf~~v~plV~------svl~G---yN~~IfaYGqTGSGKTyTM 181 (630)
...||.|.+ ++++-..+...|. .++.| ....|+-||++|+|||+..
T Consensus 130 ~~~~~di~G----~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 130 NVKWSDVAG----LEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCCGGGSCS----CHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHH
T ss_pred CCCHHHhcC----HHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 356666654 4455544433332 22223 2346888999999999876
No 167
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=48.60 E-value=8.5 Score=43.12 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=21.2
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
..+|..++.|.+ +++.++||+|||.+.
T Consensus 50 ~~~i~~il~g~d--~lv~~pTGsGKTl~~ 76 (591)
T 2v1x_A 50 LETINVTMAGKE--VFLVMPTGGGKSLCY 76 (591)
T ss_dssp HHHHHHHHTTCC--EEEECCTTSCTTHHH
T ss_pred HHHHHHHHcCCC--EEEEECCCChHHHHH
Confidence 456677888988 577789999999853
No 168
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=48.35 E-value=9.2 Score=41.85 Aligned_cols=42 Identities=36% Similarity=0.488 Sum_probs=31.3
Q ss_pred ceeEEecccCCCCcceee--------------cCC---CCCCCchhHHHHHHHHHHhcC
Q 006826 164 NVCVLAYGQTGTGKTFTM--------------DGT---SDQPGIVPRALEELFRQAALD 205 (630)
Q Consensus 164 N~~IfaYGqTGSGKTyTM--------------~G~---~~~~GIIpRal~~LF~~~~~~ 205 (630)
--.|+-||+.|+|||++. .|+ ....|--.+.++.+|..+...
T Consensus 243 prGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGesek~ir~lF~~Ar~~ 301 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTK 301 (467)
T ss_dssp CSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHHHHHHHHHHHHT
T ss_pred CCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHHHHHHHHHHHHHHhc
Confidence 456999999999999764 121 234588889999999876544
No 169
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=48.35 E-value=17 Score=27.89 Aligned_cols=35 Identities=14% Similarity=0.316 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 430 KRREIRMAELEEDMREAEAECQNVRNQIKEVESLL 464 (630)
Q Consensus 430 ~~~~~~i~~L~~el~~l~~e~~~l~~qi~~~e~~l 464 (630)
..++..+.+|+.++..|+.++..|..++..++..+
T Consensus 18 ~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 18 RKKKEYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456688888888888888888888887776543
No 170
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=48.32 E-value=8 Score=42.33 Aligned_cols=46 Identities=26% Similarity=0.380 Sum_probs=29.4
Q ss_pred EEEeceeeCCCCChhhHHHhhHHHHHHhh-----c--C--cceeEEecccCCCCcceee
Q 006826 132 EFGFDKVFNQAASQEDVFVEVEPILRSAL-----D--G--HNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 132 ~F~FD~VF~~~atQ~eVf~~v~plV~svl-----~--G--yN~~IfaYGqTGSGKTyTM 181 (630)
.++||.|.+ ++++-.++..++..+- . | ....|+-||++|+|||+.+
T Consensus 12 ~~~f~di~G----~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 12 RVTFKDVGG----AEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CCCGGGCCS----CHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCHHHhCC----cHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 456776654 4555555555555432 1 1 2345899999999999875
No 171
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=47.45 E-value=6.8 Score=44.01 Aligned_cols=27 Identities=33% Similarity=0.475 Sum_probs=20.8
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
..+|..+++|.+ ++..++||||||.+.
T Consensus 13 ~~~i~~il~g~~--~ll~~~TGsGKTl~~ 39 (699)
T 4gl2_A 13 MEVAQPALEGKN--IIICLPTGCGKTRVA 39 (699)
T ss_dssp HHHHHHHHSSCC--EEECCCTTSCHHHHH
T ss_pred HHHHHHHHhCCC--EEEEcCCCCcHHHHH
Confidence 345666778877 577799999999875
No 172
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=47.29 E-value=53 Score=36.00 Aligned_cols=7 Identities=14% Similarity=0.382 Sum_probs=2.9
Q ss_pred hhHHHhh
Q 006826 490 ENLKEAA 496 (630)
Q Consensus 490 ~~l~~~~ 496 (630)
.+++++.
T Consensus 572 ~~~~~l~ 578 (597)
T 3oja_B 572 QKVKQLE 578 (597)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444433
No 173
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=47.28 E-value=54 Score=27.60 Aligned_cols=38 Identities=24% Similarity=0.381 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 435 RMAELEEDMREAEAECQNVRNQIKEVESLLSEKKKLFS 472 (630)
Q Consensus 435 ~i~~L~~el~~l~~e~~~l~~qi~~~e~~l~e~~~~~~ 472 (630)
...+++.+..+|+.|+..|+.+|..++.++.....++.
T Consensus 37 r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 37 RNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567778888888888888888888777766665553
No 174
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=47.05 E-value=6.8 Score=42.15 Aligned_cols=36 Identities=25% Similarity=0.275 Sum_probs=23.8
Q ss_pred CCChhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 142 AASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 142 ~atQ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
+..|.+++..+...| .+|- ..++..|..|||||+++
T Consensus 27 n~~Q~~av~~~~~~i---~~~~-~~~li~G~aGTGKT~ll 62 (459)
T 3upu_A 27 TEGQKNAFNIVMKAI---KEKK-HHVTINGPAGTGATTLT 62 (459)
T ss_dssp CHHHHHHHHHHHHHH---HSSS-CEEEEECCTTSCHHHHH
T ss_pred CHHHHHHHHHHHHHH---hcCC-CEEEEEeCCCCCHHHHH
Confidence 446776665543222 2233 37888999999999876
No 175
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=47.03 E-value=6 Score=44.52 Aligned_cols=26 Identities=35% Similarity=0.328 Sum_probs=18.8
Q ss_pred HHHHhhcCcceeEEecccCCCCcceeec
Q 006826 155 ILRSALDGHNVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 155 lV~svl~GyN~~IfaYGqTGSGKTyTM~ 182 (630)
.|..++.| ..++..|++|||||+|+-
T Consensus 157 Ai~~~l~~--~~~vi~G~pGTGKTt~l~ 182 (608)
T 1w36_D 157 AAAVALTR--RISVISGGPGTGKTTTVA 182 (608)
T ss_dssp HHHHHHTB--SEEEEECCTTSTHHHHHH
T ss_pred HHHHHhcC--CCEEEEeCCCCCHHHHHH
Confidence 34444543 467888999999999873
No 176
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=46.59 E-value=7.1 Score=37.67 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=18.7
Q ss_pred HHHHHhhcCcceeEEecccCCCCcceee
Q 006826 154 PILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 154 plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
.+++++-.|--++| .|+.|||||+.+
T Consensus 14 ~~l~~i~~Ge~~~l--iG~nGsGKSTLl 39 (208)
T 3b85_A 14 HYVDAIDTNTIVFG--LGPAGSGKTYLA 39 (208)
T ss_dssp HHHHHHHHCSEEEE--ECCTTSSTTHHH
T ss_pred HHHHhccCCCEEEE--ECCCCCCHHHHH
Confidence 34555556665544 799999999987
No 177
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=46.18 E-value=5.6 Score=35.36 Aligned_cols=16 Identities=31% Similarity=0.474 Sum_probs=13.5
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
.|+-.|.+|||||+..
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778899999999854
No 178
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=46.13 E-value=6.9 Score=36.73 Aligned_cols=28 Identities=25% Similarity=0.338 Sum_probs=19.7
Q ss_pred HHHHHhhc-Cc--ceeEEecccCCCCcceee
Q 006826 154 PILRSALD-GH--NVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 154 plV~svl~-Gy--N~~IfaYGqTGSGKTyTM 181 (630)
+.++.++. |. ...+.-+|++|||||..+
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~ 40 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFS 40 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHH
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHH
Confidence 34566665 43 235666899999999886
No 179
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=46.09 E-value=52 Score=25.79 Aligned_cols=34 Identities=18% Similarity=0.285 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 433 EIRMAELEEDMREAEAECQNVRNQIKEVESLLSE 466 (630)
Q Consensus 433 ~~~i~~L~~el~~l~~e~~~l~~qi~~~e~~l~e 466 (630)
+....+|+.+..+|+.++..|+.++..+..++.|
T Consensus 29 e~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 29 TGECKELEKKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455666666666666666666666666665543
No 180
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=45.88 E-value=13 Score=36.48 Aligned_cols=29 Identities=38% Similarity=0.508 Sum_probs=20.1
Q ss_pred HHHHHHhhcCcc-----eeEEecccCCCCcceee
Q 006826 153 EPILRSALDGHN-----VCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 153 ~plV~svl~GyN-----~~IfaYGqTGSGKTyTM 181 (630)
..++..++.|+. ..|+..|+.|||||+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 16 ARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIH 49 (253)
T ss_dssp HHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHH
T ss_pred HHHHHHHHccCCcccCCeEEEEECCCCCCHHHHH
Confidence 445555555432 46889999999999753
No 181
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=45.50 E-value=9.3 Score=42.10 Aligned_cols=46 Identities=26% Similarity=0.314 Sum_probs=29.0
Q ss_pred EEEeceeeCCCCChhhHHHhhHHHHHHh-----hcCc----ceeEEecccCCCCcceee
Q 006826 132 EFGFDKVFNQAASQEDVFVEVEPILRSA-----LDGH----NVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 132 ~F~FD~VF~~~atQ~eVf~~v~plV~sv-----l~Gy----N~~IfaYGqTGSGKTyTM 181 (630)
.++||.|.+ ++++-.++..++..+ +... ...|+-||++|+|||+.+
T Consensus 27 ~~~f~dv~G----~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 27 KVTFKDVAG----AEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp CCCTTSSCS----CHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCHHHcCC----cHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHH
Confidence 456776654 455555555555442 2221 224899999999999876
No 182
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=45.30 E-value=4.9 Score=37.04 Aligned_cols=17 Identities=29% Similarity=0.489 Sum_probs=14.3
Q ss_pred eEEecccCCCCcceeec
Q 006826 166 CVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM~ 182 (630)
++.-.|++|||||+.+-
T Consensus 11 i~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 56678999999999874
No 183
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=44.72 E-value=7.4 Score=40.34 Aligned_cols=27 Identities=30% Similarity=0.234 Sum_probs=20.1
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceeec
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM~ 182 (630)
...+..++.| -++..++||+|||.++.
T Consensus 15 ~~~i~~~~~~---~~ll~~~tG~GKT~~~~ 41 (494)
T 1wp9_A 15 EVIYAKCKET---NCLIVLPTGLGKTLIAM 41 (494)
T ss_dssp HHHHHHGGGS---CEEEECCTTSCHHHHHH
T ss_pred HHHHHHHhhC---CEEEEcCCCCCHHHHHH
Confidence 3456677788 44566899999998863
No 184
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=44.64 E-value=6.6 Score=42.18 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=19.3
Q ss_pred HHHHhhcCcceeEEecccCCCCccee
Q 006826 155 ILRSALDGHNVCVLAYGQTGTGKTFT 180 (630)
Q Consensus 155 lV~svl~GyN~~IfaYGqTGSGKTyT 180 (630)
++..++.|.+. +++.|+||||||..
T Consensus 11 ~i~~~l~~~~~-~lv~a~TGsGKT~~ 35 (451)
T 2jlq_A 11 VDEDIFRKKRL-TIMDLHPGAGKTKR 35 (451)
T ss_dssp CCGGGGSTTCE-EEECCCTTSSCCTT
T ss_pred HHHHHHhcCCe-EEEECCCCCCHhhH
Confidence 34567888765 46679999999986
No 185
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=44.33 E-value=7.7 Score=36.32 Aligned_cols=28 Identities=36% Similarity=0.431 Sum_probs=21.3
Q ss_pred HHHHHhhc-Cc--ceeEEecccCCCCcceee
Q 006826 154 PILRSALD-GH--NVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 154 plV~svl~-Gy--N~~IfaYGqTGSGKTyTM 181 (630)
+-++.++. |. ...+.-+|++|||||..+
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~ 37 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLA 37 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHH
Confidence 45677775 54 346888999999999876
No 186
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=44.23 E-value=33 Score=26.74 Aligned_cols=36 Identities=17% Similarity=0.279 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 432 REIRMAELEEDMREAEAECQNVRNQIKEVESLLSEK 467 (630)
Q Consensus 432 ~~~~i~~L~~el~~l~~e~~~l~~qi~~~e~~l~e~ 467 (630)
+...+.+|+.++..++.++..|..++..++..+...
T Consensus 20 Kk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 20 KLERIARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888888888888887777776655433
No 187
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=43.60 E-value=7.6 Score=43.68 Aligned_cols=27 Identities=33% Similarity=0.397 Sum_probs=19.2
Q ss_pred HHHHHhhcCcceeEEecccCCCCcceeec
Q 006826 154 PILRSALDGHNVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 154 plV~svl~GyN~~IfaYGqTGSGKTyTM~ 182 (630)
..|..++.+ ..++..|++|||||+|+.
T Consensus 187 ~av~~~l~~--~~~li~GppGTGKT~~~~ 213 (624)
T 2gk6_A 187 YAVKTVLQR--PLSLIQGPPGTGKTVTSA 213 (624)
T ss_dssp HHHHHHHTC--SEEEEECCTTSCHHHHHH
T ss_pred HHHHHHhcC--CCeEEECCCCCCHHHHHH
Confidence 445555542 345778999999999974
No 188
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=43.55 E-value=9.8 Score=42.66 Aligned_cols=27 Identities=33% Similarity=0.513 Sum_probs=20.2
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
..+|..++.|.|+ +..++||||||...
T Consensus 19 ~~~i~~~l~g~~~--iv~~~TGsGKTl~~ 45 (696)
T 2ykg_A 19 LELALPAMKGKNT--IICAPTGCGKTFVS 45 (696)
T ss_dssp HHHHHHHHTTCCE--EEECCTTSSHHHHH
T ss_pred HHHHHHHHcCCCE--EEEcCCCchHHHHH
Confidence 3455667788874 67789999999853
No 189
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=43.17 E-value=9.1 Score=42.29 Aligned_cols=16 Identities=44% Similarity=0.679 Sum_probs=14.2
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
+|...|++|||||.++
T Consensus 295 VI~LVGpNGSGKTTLl 310 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTI 310 (503)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCcccHHHHH
Confidence 5777899999999998
No 190
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=43.00 E-value=13 Score=39.20 Aligned_cols=17 Identities=29% Similarity=0.581 Sum_probs=14.9
Q ss_pred eeEEecccCCCCcceee
Q 006826 165 VCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM 181 (630)
.+|.-.|++|||||.|+
T Consensus 158 ~vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 36778899999999998
No 191
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=43.00 E-value=8.2 Score=39.31 Aligned_cols=16 Identities=44% Similarity=0.837 Sum_probs=13.7
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
.|...|++|+|||+|+
T Consensus 107 vi~lvG~~GsGKTTl~ 122 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTL 122 (296)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5566799999999998
No 192
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=42.49 E-value=33 Score=24.12 Aligned_cols=30 Identities=23% Similarity=0.406 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 436 MAELEEDMREAEAECQNVRNQIKEVESLLS 465 (630)
Q Consensus 436 i~~L~~el~~l~~e~~~l~~qi~~~e~~l~ 465 (630)
+.+|+.+..++..+...|.+++..+++++.
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 344555556666666666666555555544
No 193
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=42.06 E-value=5.7 Score=41.65 Aligned_cols=16 Identities=31% Similarity=0.478 Sum_probs=13.4
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
.++..|+||||||++|
T Consensus 37 ~~~i~G~~G~GKs~~~ 52 (392)
T 4ag6_A 37 NWTILAKPGAGKSFTA 52 (392)
T ss_dssp CEEEECCTTSSHHHHH
T ss_pred ceEEEcCCCCCHHHHH
Confidence 3566799999999987
No 194
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=41.89 E-value=31 Score=23.16 Aligned_cols=26 Identities=31% Similarity=0.515 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 438 ELEEDMREAEAECQNVRNQIKEVESL 463 (630)
Q Consensus 438 ~L~~el~~l~~e~~~l~~qi~~~e~~ 463 (630)
.|+++++.++.-.+.|++.+..+|+-
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~t 28 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEET 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666665555443
No 195
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=41.84 E-value=92 Score=25.32 Aligned_cols=15 Identities=27% Similarity=0.317 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q 006826 438 ELEEDMREAEAECQN 452 (630)
Q Consensus 438 ~L~~el~~l~~e~~~ 452 (630)
+|+.++.+.+++++.
T Consensus 44 eLEk~L~ekd~eI~~ 58 (72)
T 3nmd_A 44 ELELELDQKDELIQM 58 (72)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 196
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=41.77 E-value=7.3 Score=43.36 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=16.6
Q ss_pred cceeEEecccCCCCcceeec
Q 006826 163 HNVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 163 yN~~IfaYGqTGSGKTyTM~ 182 (630)
.+..++..|..|||||+|+.
T Consensus 21 ~~~~~lV~a~aGsGKT~~l~ 40 (647)
T 3lfu_A 21 PRSNLLVLAGAGSGKTRVLV 40 (647)
T ss_dssp CSSCEEEEECTTSCHHHHHH
T ss_pred CCCCEEEEECCCCCHHHHHH
Confidence 35567888999999999984
No 197
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=41.47 E-value=58 Score=22.88 Aligned_cols=30 Identities=10% Similarity=0.285 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 436 MAELEEDMREAEAECQNVRNQIKEVESLLS 465 (630)
Q Consensus 436 i~~L~~el~~l~~e~~~l~~qi~~~e~~l~ 465 (630)
+.+|+..+.+|-.+...|.+++..+.+++.
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 445555555555566666655555555443
No 198
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=41.46 E-value=63 Score=24.86 Aligned_cols=36 Identities=8% Similarity=0.124 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006826 51 QKNELEQSIINLEGEIVELRLKKRRLDEKRREALNK 86 (630)
Q Consensus 51 ~~~~l~~~~~~l~~~~~~l~~~~~~~~~~Rr~l~n~ 86 (630)
.-..|..++..|+++.+.|..-+.++...||+|-.-
T Consensus 11 tVYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~ 46 (56)
T 2w6b_A 11 TVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKL 46 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788889999999999988888888888877543
No 199
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=41.38 E-value=33 Score=23.78 Aligned_cols=29 Identities=17% Similarity=0.336 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 436 MAELEEDMREAEAECQNVRNQIKEVESLL 464 (630)
Q Consensus 436 i~~L~~el~~l~~e~~~l~~qi~~~e~~l 464 (630)
+.+|+.++.++-.+...|++++..+.+++
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 44555555555555566655555555544
No 200
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=41.07 E-value=6.2 Score=36.67 Aligned_cols=16 Identities=25% Similarity=0.366 Sum_probs=13.0
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
.|.-.|++|||||..+
T Consensus 9 ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLV 24 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4556799999999876
No 201
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=40.88 E-value=13 Score=41.10 Aligned_cols=28 Identities=36% Similarity=0.574 Sum_probs=20.4
Q ss_pred HHHHHHhhcCcceeEEecccCCCCccee
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFT 180 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyT 180 (630)
..+|..++.|-+--+++.++||||||.+
T Consensus 49 ~~~i~~il~~~~~dvlv~apTGsGKTl~ 76 (579)
T 3sqw_A 49 QKTIKPILSSEDHDVIARAKTGTGKTFA 76 (579)
T ss_dssp HHHHHHHHCSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHHHHccCCCeEEEEcCCCcHHHHH
Confidence 4566777754444567788999999986
No 202
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=40.77 E-value=9.4 Score=35.90 Aligned_cols=28 Identities=29% Similarity=0.391 Sum_probs=20.4
Q ss_pred HHHHHhhc-Cc--ceeEEecccCCCCcceee
Q 006826 154 PILRSALD-GH--NVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 154 plV~svl~-Gy--N~~IfaYGqTGSGKTyTM 181 (630)
+-++.++. |. .-.+.-+|++|||||..+
T Consensus 12 ~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 12 KSLDKLLGGGIETQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp HHHHHHTTSSEESSEEEEEEESTTSSHHHHH
T ss_pred hhHHhHhcCCCCCCcEEEEECCCCCCHHHHH
Confidence 45566774 43 345778899999999876
No 203
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=40.53 E-value=8.9 Score=43.89 Aligned_cols=30 Identities=23% Similarity=0.294 Sum_probs=22.0
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceeec
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM~ 182 (630)
..+++.+.......++-||++|+|||+.+.
T Consensus 196 ~~l~~~l~~~~~~~vlL~G~~GtGKT~la~ 225 (758)
T 1r6b_X 196 ERAIQVLCRRRKNNPLLVGESGVGKTAIAE 225 (758)
T ss_dssp HHHHHHHTSSSSCEEEEECCTTSSHHHHHH
T ss_pred HHHHHHHhccCCCCeEEEcCCCCCHHHHHH
Confidence 445555555556667889999999999874
No 204
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=40.46 E-value=98 Score=25.38 Aligned_cols=46 Identities=17% Similarity=0.242 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 006826 433 EIRMAELEEDMREAEAECQNVRNQIKEVESLLSEKKKLFSAACQSL 478 (630)
Q Consensus 433 ~~~i~~L~~el~~l~~e~~~l~~qi~~~e~~l~e~~~~~~~~~~~l 478 (630)
+.+|.+|+.++.-+++-+..|.+.+...+..+...++.+....+++
T Consensus 13 e~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl 58 (78)
T 3efg_A 13 EARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDL 58 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467777777777777777777777777666666666655554444
No 205
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=40.38 E-value=10 Score=43.08 Aligned_cols=45 Identities=31% Similarity=0.467 Sum_probs=30.6
Q ss_pred EEeceeeCCCCChhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceeec
Q 006826 133 FGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 133 F~FD~VF~~~atQ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM~ 182 (630)
|.|.. |.|...|..-+.. +++.+-.|... ....|.|||||||||.
T Consensus 2 ~~~~~-~~~~~~q~~ai~~---l~~~~~~~~~~-~~l~g~tgs~kt~~~a 46 (664)
T 1c4o_A 2 FRYRG-PSPKGDQPKAIAG---LVEALRDGERF-VTLLGATGTGKTVTMA 46 (664)
T ss_dssp CCCCS-CCCCTTHHHHHHH---HHHHHHTTCSE-EEEEECTTSCHHHHHH
T ss_pred CCCCC-CCCCCCChHHHHH---HHHHHhcCCCc-EEEEcCCCcHHHHHHH
Confidence 34443 3788888776544 55565667533 3456999999999995
No 206
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=40.32 E-value=6.6 Score=42.27 Aligned_cols=24 Identities=25% Similarity=0.499 Sum_probs=20.5
Q ss_pred HhhcCcceeEEecccCCCCcceee
Q 006826 158 SALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 158 svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
.+++|++..|...|++|+|||..|
T Consensus 25 ~vl~~vsf~I~lvG~sGaGKSTLl 48 (418)
T 2qag_C 25 SVKRGFEFTLMVVGESGLGKSTLI 48 (418)
T ss_dssp TCC-CCCEEEEEECCTTSSHHHHH
T ss_pred EEecCCCEEEEEECCCCCcHHHHH
Confidence 368999999999999999999876
No 207
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=40.27 E-value=5.9 Score=42.07 Aligned_cols=18 Identities=39% Similarity=0.578 Sum_probs=15.8
Q ss_pred ceeEEecccCCCCcceee
Q 006826 164 NVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 164 N~~IfaYGqTGSGKTyTM 181 (630)
+.-++..|.||||||.++
T Consensus 53 ~~h~~i~G~tGsGKs~~~ 70 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL 70 (437)
T ss_dssp GGCEEEEECTTSSHHHHH
T ss_pred cceEEEECCCCCCHHHHH
Confidence 566788999999999986
No 208
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=40.27 E-value=10 Score=35.60 Aligned_cols=29 Identities=17% Similarity=0.202 Sum_probs=19.8
Q ss_pred HHHHHHhhc---CcceeEEecccCCCCcceee
Q 006826 153 EPILRSALD---GHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 153 ~plV~svl~---GyN~~IfaYGqTGSGKTyTM 181 (630)
..+++.++. .....|...|.+|||||..+
T Consensus 8 ~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 8 DFLCKTILAIKTAGRLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp HHHHHHHHTSCCSSSEEEEEEECTTSSHHHHH
T ss_pred HHHHHHHHHhccCCCeEEEEECCCCCCHHHHH
Confidence 344444443 33456888899999999876
No 209
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=40.14 E-value=7.8 Score=34.96 Aligned_cols=17 Identities=29% Similarity=0.423 Sum_probs=14.0
Q ss_pred eeEEecccCCCCcceee
Q 006826 165 VCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM 181 (630)
..|+..|..|||||+..
T Consensus 3 ~~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEecCCCCCHHHHH
Confidence 35788999999999843
No 210
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=40.11 E-value=13 Score=40.13 Aligned_cols=17 Identities=35% Similarity=0.544 Sum_probs=14.4
Q ss_pred eeEEecccCCCCcceee
Q 006826 165 VCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM 181 (630)
..|+..|.+|+|||+|+
T Consensus 98 ~vI~lvG~~GsGKTTt~ 114 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTA 114 (433)
T ss_dssp EEEEECCCTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45667799999999997
No 211
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=39.49 E-value=6.7 Score=36.30 Aligned_cols=16 Identities=19% Similarity=0.451 Sum_probs=13.2
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
.|.-.|++|||||..+
T Consensus 7 ~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIK 22 (180)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999999876
No 212
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=39.33 E-value=7.7 Score=36.80 Aligned_cols=16 Identities=25% Similarity=0.409 Sum_probs=13.6
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
.|.-.|++|||||.++
T Consensus 10 ~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVR 25 (208)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 5666899999999876
No 213
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=39.25 E-value=38 Score=23.38 Aligned_cols=28 Identities=18% Similarity=0.418 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 437 AELEEDMREAEAECQNVRNQIKEVESLL 464 (630)
Q Consensus 437 ~~L~~el~~l~~e~~~l~~qi~~~e~~l 464 (630)
.+|+.++.++-.+...|++++..+.+++
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3455555555555555555555554444
No 214
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=39.15 E-value=12 Score=35.41 Aligned_cols=29 Identities=21% Similarity=0.185 Sum_probs=18.9
Q ss_pred HHHHHHhhc--CcceeEEecccCCCCcceee
Q 006826 153 EPILRSALD--GHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 153 ~plV~svl~--GyN~~IfaYGqTGSGKTyTM 181 (630)
..+++.+.. +-.-.|.-.|++|||||+.+
T Consensus 9 ~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 9 QGVLERLDPRQPGRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp HHHHHHSCTTCCSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHhcCCCCeEEEEECCCCCCHHHHH
Confidence 344444442 33445666799999999876
No 215
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=39.09 E-value=1.8e+02 Score=24.83 Aligned_cols=43 Identities=16% Similarity=0.132 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHh
Q 006826 439 LEEDMREAEAECQNVRNQIKEVESLLSEKKKLFSAACQSLEDE 481 (630)
Q Consensus 439 L~~el~~l~~e~~~l~~qi~~~e~~l~e~~~~~~~~~~~l~~e 481 (630)
++.+..+.+.++..|+..+..++..++..+..+......++..
T Consensus 35 ~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ 77 (101)
T 3u1c_A 35 AEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFA 77 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444434333
No 216
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=39.07 E-value=13 Score=42.74 Aligned_cols=35 Identities=29% Similarity=0.480 Sum_probs=25.7
Q ss_pred hHHHhhHHHHHHh-hcCcceeEEecccCCCCcceee
Q 006826 147 DVFVEVEPILRSA-LDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 147 eVf~~v~plV~sv-l~GyN~~IfaYGqTGSGKTyTM 181 (630)
.||.-......++ -++.|-||+.-|.+|||||.+.
T Consensus 76 HifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~t 111 (697)
T 1lkx_A 76 HMYALANDAYRSMRQSQENQCVIISGESGAGKTEAS 111 (697)
T ss_dssp CHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHHHHHHHHHHhcCCCcEEEecCCCCCCchhhH
Confidence 4665443333333 3799999999999999999874
No 217
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=39.00 E-value=6.4 Score=40.07 Aligned_cols=24 Identities=25% Similarity=0.511 Sum_probs=16.8
Q ss_pred HhhcCcceeEEecccCCCCcceee
Q 006826 158 SALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 158 svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
.+++|++..|...|++|+|||..|
T Consensus 12 ~~l~~~~~~I~lvG~nG~GKSTLl 35 (301)
T 2qnr_A 12 SVKKGFEFTLMVVGESGLGKSTLI 35 (301)
T ss_dssp ------CEEEEEEEETTSSHHHHH
T ss_pred EEEcCCCEEEEEECCCCCCHHHHH
Confidence 367899999999999999999876
No 218
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=38.74 E-value=14 Score=40.13 Aligned_cols=19 Identities=37% Similarity=0.504 Sum_probs=16.1
Q ss_pred ceeEEecccCCCCcceeec
Q 006826 164 NVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 164 N~~IfaYGqTGSGKTyTM~ 182 (630)
...|+..|.+|+|||+|..
T Consensus 100 p~vIlivG~~G~GKTTt~~ 118 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVA 118 (443)
T ss_dssp SEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHH
Confidence 4578889999999999973
No 219
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=38.64 E-value=1.7e+02 Score=24.28 Aligned_cols=41 Identities=15% Similarity=0.285 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006826 436 MAELEEDMREAEAECQNVRNQIKEVESLLSEKKKLFSAACQ 476 (630)
Q Consensus 436 i~~L~~el~~l~~e~~~l~~qi~~~e~~l~e~~~~~~~~~~ 476 (630)
+.+|..++..++.|+..|+-++++....++..++.....+.
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~ 62 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILL 62 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666666666666665555555444434333
No 220
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=38.04 E-value=8.8 Score=35.11 Aligned_cols=16 Identities=31% Similarity=0.355 Sum_probs=13.3
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
.|+-.|.+|||||+.-
T Consensus 7 ~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVG 22 (185)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778899999999743
No 221
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=37.99 E-value=78 Score=29.34 Aligned_cols=6 Identities=33% Similarity=0.440 Sum_probs=0.0
Q ss_pred ccCCCC
Q 006826 368 VPYRNS 373 (630)
Q Consensus 368 iPYRdS 373 (630)
-||-||
T Consensus 20 ~~~~~~ 25 (152)
T 3a7p_A 20 NPQTDS 25 (152)
T ss_dssp ------
T ss_pred CCcchh
Confidence 344443
No 222
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=37.91 E-value=7.3 Score=36.18 Aligned_cols=15 Identities=33% Similarity=0.662 Sum_probs=12.7
Q ss_pred EEecccCCCCcceee
Q 006826 167 VLAYGQTGTGKTFTM 181 (630)
Q Consensus 167 IfaYGqTGSGKTyTM 181 (630)
|.-.|++|||||.++
T Consensus 4 i~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 4 IVISGPSGTGKSTLL 18 (186)
T ss_dssp EEEESSSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 455799999999886
No 223
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=37.85 E-value=9.5 Score=36.28 Aligned_cols=26 Identities=38% Similarity=0.470 Sum_probs=18.7
Q ss_pred HHHhhcC-c--ceeEEecccCCCCcceee
Q 006826 156 LRSALDG-H--NVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 156 V~svl~G-y--N~~IfaYGqTGSGKTyTM 181 (630)
++.++.| . ...+.-+|++|||||..+
T Consensus 12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~ 40 (247)
T 2dr3_A 12 VDEILHGGIPERNVVLLSGGPGTGKTIFS 40 (247)
T ss_dssp HHHHTTTSEETTCEEEEEECTTSSHHHHH
T ss_pred HHHHcCCCCCCCcEEEEECCCCCCHHHHH
Confidence 4566543 3 346778899999999885
No 224
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=37.70 E-value=7.1 Score=35.88 Aligned_cols=17 Identities=29% Similarity=0.456 Sum_probs=14.1
Q ss_pred eeEEecccCCCCcceee
Q 006826 165 VCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM 181 (630)
..|.-.|+.|||||+.+
T Consensus 10 ~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIA 26 (191)
T ss_dssp EEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35677899999999876
No 225
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=37.60 E-value=9 Score=34.72 Aligned_cols=17 Identities=18% Similarity=0.307 Sum_probs=14.4
Q ss_pred eeEEecccCCCCcceee
Q 006826 165 VCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM 181 (630)
..|+..|.+|||||...
T Consensus 4 ~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36888999999999765
No 226
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=37.56 E-value=16 Score=41.99 Aligned_cols=30 Identities=17% Similarity=0.252 Sum_probs=21.3
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceeec
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM~ 182 (630)
..+++.+..+....++-||++|+|||....
T Consensus 190 ~~l~~~l~~~~~~~vLL~G~pGtGKT~la~ 219 (758)
T 3pxi_A 190 QRVIEVLSRRTKNNPVLIGEPGVGKTAIAE 219 (758)
T ss_dssp HHHHHHHHCSSSCEEEEESCTTTTTHHHHH
T ss_pred HHHHHHHhCCCCCCeEEECCCCCCHHHHHH
Confidence 344444445555668899999999998763
No 227
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=37.09 E-value=12 Score=37.46 Aligned_cols=17 Identities=24% Similarity=0.257 Sum_probs=15.2
Q ss_pred eeEEecccCCCCcceee
Q 006826 165 VCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM 181 (630)
..++.||+.|+|||..+
T Consensus 32 ~~v~i~G~~G~GKT~Ll 48 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLL 48 (350)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcCCHHHHH
Confidence 67888999999999876
No 228
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=37.07 E-value=14 Score=42.82 Aligned_cols=35 Identities=31% Similarity=0.429 Sum_probs=25.3
Q ss_pred hHHHhhHHHHHHh-hcCcceeEEecccCCCCcceee
Q 006826 147 DVFVEVEPILRSA-LDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 147 eVf~~v~plV~sv-l~GyN~~IfaYGqTGSGKTyTM 181 (630)
.||.-......++ -++.|-||+..|.+|||||.+.
T Consensus 154 HifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~t 189 (770)
T 1w9i_A 154 HIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENT 189 (770)
T ss_dssp CHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHH
T ss_pred cHHHHHHHHHHHHHhhcCCcEEEEecCCCCcchHHH
Confidence 4665443333333 3799999999999999999874
No 229
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=36.88 E-value=14 Score=42.92 Aligned_cols=36 Identities=22% Similarity=0.365 Sum_probs=26.2
Q ss_pred hhHHHhhHHHHHHh-hcCcceeEEecccCCCCcceee
Q 006826 146 EDVFVEVEPILRSA-LDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 146 ~eVf~~v~plV~sv-l~GyN~~IfaYGqTGSGKTyTM 181 (630)
-.||.-......++ -++.|-||+.-|.+|||||.+.
T Consensus 121 PHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~t 157 (784)
T 2v26_A 121 PHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENT 157 (784)
T ss_dssp SCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred chHHHHHHHHHHHHHhcCCCcEEEEcCCCCCCceehH
Confidence 34675543333333 3699999999999999999774
No 230
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=36.85 E-value=7.5 Score=38.55 Aligned_cols=19 Identities=32% Similarity=0.436 Sum_probs=16.5
Q ss_pred ceeEEecccCCCCcceeec
Q 006826 164 NVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 164 N~~IfaYGqTGSGKTyTM~ 182 (630)
...||..|..|+||||+|.
T Consensus 6 ~l~I~~~~kgGvGKTt~a~ 24 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAML 24 (228)
T ss_dssp CEEEEEESSTTSSHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHH
Confidence 3568999999999999984
No 231
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=36.78 E-value=12 Score=43.40 Aligned_cols=39 Identities=21% Similarity=0.307 Sum_probs=27.1
Q ss_pred CCCCChhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 140 NQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 140 ~~~atQ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
.+..-|.+++..+ ....-.|....++..|+||||||...
T Consensus 368 ~lt~~Q~~ai~~I---~~~l~~~~~~~~Ll~a~TGSGKTlva 406 (780)
T 1gm5_A 368 KLTNAQKRAHQEI---RNDMISEKPMNRLLQGDVGSGKTVVA 406 (780)
T ss_dssp CCCHHHHHHHHHH---HHHHHSSSCCCCEEECCSSSSHHHHH
T ss_pred CCCHHHHHHHHHH---HhhccccCCCcEEEEcCCCCCHHHHH
Confidence 4566677766554 33344566567788999999999875
No 232
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=36.74 E-value=7.6 Score=36.68 Aligned_cols=16 Identities=31% Similarity=0.515 Sum_probs=13.6
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
.+.-.|++|||||.++
T Consensus 6 ~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLL 21 (198)
T ss_dssp CEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999999987
No 233
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=36.74 E-value=9.2 Score=34.94 Aligned_cols=17 Identities=35% Similarity=0.374 Sum_probs=14.2
Q ss_pred eeEEecccCCCCcceee
Q 006826 165 VCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM 181 (630)
..|+..|.+|||||+..
T Consensus 12 ~~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLG 28 (180)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEEeCCCCCHHHHH
Confidence 35788999999999864
No 234
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=36.64 E-value=12 Score=43.03 Aligned_cols=27 Identities=37% Similarity=0.621 Sum_probs=20.6
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
...|..++.|.| ++..++||||||.+.
T Consensus 254 ~~~i~~~l~~~~--~ll~~~TGsGKTl~~ 280 (797)
T 4a2q_A 254 IELAQPAINGKN--ALICAPTGSGKTFVS 280 (797)
T ss_dssp HHHHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHHHhCCC--EEEEeCCCChHHHHH
Confidence 346667788877 466789999999874
No 235
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=36.52 E-value=1.8e+02 Score=24.76 Aligned_cols=35 Identities=20% Similarity=0.308 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 435 RMAELEEDMREAEAECQNVRNQIKEVESLLSEKKK 469 (630)
Q Consensus 435 ~i~~L~~el~~l~~e~~~l~~qi~~~e~~l~e~~~ 469 (630)
.+..|...+..++.++..+..++......+++..+
T Consensus 45 Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek 79 (101)
T 3u1c_A 45 DIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEE 79 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444333
No 236
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=36.37 E-value=1.1e+02 Score=25.47 Aligned_cols=51 Identities=18% Similarity=0.246 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhhhHHHhhhcc
Q 006826 435 RMAELEEDMREAEAECQNVRNQIKEV------ESLLSEKKKLFSAACQSLEDEEKSF 485 (630)
Q Consensus 435 ~i~~L~~el~~l~~e~~~l~~qi~~~------e~~l~e~~~~~~~~~~~l~~e~~~~ 485 (630)
.+..|..+|..++.++..|..++..- -..+.+....+......|+.....|
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erW 79 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERW 79 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666777777666666665421 1233334444444444455554333
No 237
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=35.87 E-value=15 Score=43.08 Aligned_cols=35 Identities=26% Similarity=0.391 Sum_probs=25.6
Q ss_pred hHHHhhHHHHHHh-hcCcceeEEecccCCCCcceee
Q 006826 147 DVFVEVEPILRSA-LDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 147 eVf~~v~plV~sv-l~GyN~~IfaYGqTGSGKTyTM 181 (630)
.||.-......+. -++.|-||+..|.+|||||.+.
T Consensus 151 HifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~t 186 (837)
T 1kk8_A 151 HLFSVADNAYQNMVTDRENQSCLITGESGAGKTENT 186 (837)
T ss_dssp CHHHHHHHHHHHHHHHTSEEEEEEECSTTSSHHHHH
T ss_pred cHHHHHHHHHHHHHhcCCCcEEEEeCCCCCCchhhH
Confidence 4665443333333 3799999999999999999875
No 238
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=35.42 E-value=8.6 Score=38.58 Aligned_cols=19 Identities=26% Similarity=0.541 Sum_probs=15.7
Q ss_pred cceeEEecccCCCCcceee
Q 006826 163 HNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 163 yN~~IfaYGqTGSGKTyTM 181 (630)
|+-++...|++|+|||..|
T Consensus 1 f~f~v~lvG~nGaGKSTLl 19 (270)
T 3sop_A 1 FDFNIMVVGQSGLGKSTLV 19 (270)
T ss_dssp CEEEEEEEESSSSSHHHHH
T ss_pred CeeEEEEECCCCCCHHHHH
Confidence 3557788899999999876
No 239
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=35.33 E-value=12 Score=44.09 Aligned_cols=26 Identities=38% Similarity=0.680 Sum_probs=20.1
Q ss_pred HHHHHhhcCcceeEEecccCCCCcceee
Q 006826 154 PILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 154 plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
..|..++.|.|+ +..++||||||.+.
T Consensus 255 ~ai~~il~g~~~--ll~a~TGsGKTl~~ 280 (936)
T 4a2w_A 255 ELAQPAINGKNA--LICAPTGSGKTFVS 280 (936)
T ss_dssp HHHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHHHcCCCE--EEEeCCCchHHHHH
Confidence 456667888774 66789999999875
No 240
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=35.30 E-value=8.5 Score=36.02 Aligned_cols=15 Identities=33% Similarity=0.636 Sum_probs=12.8
Q ss_pred EEecccCCCCcceee
Q 006826 167 VLAYGQTGTGKTFTM 181 (630)
Q Consensus 167 IfaYGqTGSGKTyTM 181 (630)
+.-.|+.|||||+.+
T Consensus 3 i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 3 IIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456899999999976
No 241
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=35.28 E-value=8.7 Score=35.62 Aligned_cols=16 Identities=25% Similarity=0.409 Sum_probs=13.4
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
.|.-.|++|||||..+
T Consensus 8 ~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVR 23 (207)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5667799999999876
No 242
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=35.17 E-value=62 Score=22.45 Aligned_cols=29 Identities=17% Similarity=0.354 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 436 MAELEEDMREAEAECQNVRNQIKEVESLL 464 (630)
Q Consensus 436 i~~L~~el~~l~~e~~~l~~qi~~~e~~l 464 (630)
+.+|+.+..++-.+...|+.++..+.+++
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 44555556566666666655555555443
No 243
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=35.14 E-value=12 Score=43.59 Aligned_cols=27 Identities=33% Similarity=0.368 Sum_probs=18.9
Q ss_pred HHHHHhhcCcceeEEecccCCCCcceeec
Q 006826 154 PILRSALDGHNVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 154 plV~svl~GyN~~IfaYGqTGSGKTyTM~ 182 (630)
..|..++.+ ..++..|+.|||||+|+.
T Consensus 367 ~Av~~~l~~--~~~lI~GppGTGKT~~i~ 393 (802)
T 2xzl_A 367 NAVSHVLQR--PLSLIQGPPGTGKTVTSA 393 (802)
T ss_dssp HHHHHHTTC--SEEEEECSTTSSHHHHHH
T ss_pred HHHHHHhcC--CCEEEECCCCCCHHHHHH
Confidence 345555542 345779999999999974
No 244
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=35.03 E-value=6.6 Score=36.95 Aligned_cols=17 Identities=24% Similarity=0.192 Sum_probs=14.5
Q ss_pred eEEecccCCCCcceeec
Q 006826 166 CVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM~ 182 (630)
.++-||+.|||||+.+.
T Consensus 5 i~vi~G~~gsGKTT~ll 21 (184)
T 2orw_A 5 LTVITGPMYSGKTTELL 21 (184)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46789999999999874
No 245
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=35.02 E-value=7.2 Score=38.30 Aligned_cols=18 Identities=22% Similarity=0.073 Sum_probs=15.2
Q ss_pred eeEEecccCCCCcceeec
Q 006826 165 VCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM~ 182 (630)
..++-||.+|||||..+.
T Consensus 13 ~i~litG~mGsGKTT~ll 30 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELI 30 (223)
T ss_dssp EEEEEECSTTSCHHHHHH
T ss_pred EEEEEECCCCCcHHHHHH
Confidence 467889999999998874
No 246
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=35.01 E-value=36 Score=23.45 Aligned_cols=27 Identities=22% Similarity=0.345 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 437 AELEEDMREAEAECQNVRNQIKEVESL 463 (630)
Q Consensus 437 ~~L~~el~~l~~e~~~l~~qi~~~e~~ 463 (630)
.+|+.++.++-.+...|.+++..+.++
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl~~l 29 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARNTKL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 344444555555555555554444443
No 247
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=34.98 E-value=95 Score=26.29 Aligned_cols=43 Identities=26% Similarity=0.279 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 006826 50 QQKNELEQSIINLEGEIVELRLKKRRLDEKRREALNKILDIKG 92 (630)
Q Consensus 50 ~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~Rr~l~n~~~elkG 92 (630)
+++.+|+.+...++.++..|+........+|..+-..+..|.|
T Consensus 48 ~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L~~ 90 (90)
T 2wt7_B 48 QQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKLAN 90 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3557788888888888888888888888888888777777764
No 248
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=34.93 E-value=16 Score=42.57 Aligned_cols=35 Identities=26% Similarity=0.499 Sum_probs=25.6
Q ss_pred hHHHhhHHHHHHh-hcCcceeEEecccCCCCcceee
Q 006826 147 DVFVEVEPILRSA-LDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 147 eVf~~v~plV~sv-l~GyN~~IfaYGqTGSGKTyTM 181 (630)
.||.-......++ -++.|-||+.-|.+|||||.+.
T Consensus 138 HifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~t 173 (795)
T 1w7j_A 138 HIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSA 173 (795)
T ss_dssp CHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred cHhHHHHHHHHHhHhcCCCeEEEEeCCCCCCcchHH
Confidence 4665443333333 3689999999999999999774
No 249
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=34.63 E-value=17 Score=43.39 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=19.1
Q ss_pred HHHHHhhcCcceeEEecccCCCCccee
Q 006826 154 PILRSALDGHNVCVLAYGQTGTGKTFT 180 (630)
Q Consensus 154 plV~svl~GyN~~IfaYGqTGSGKTyT 180 (630)
..|..++.|.+ ++..|+||||||.+
T Consensus 46 ~aI~~il~g~~--vlv~apTGsGKTlv 70 (997)
T 4a4z_A 46 EAVYHLEQGDS--VFVAAHTSAGKTVV 70 (997)
T ss_dssp HHHHHHHTTCE--EEEECCTTSCSHHH
T ss_pred HHHHHHHcCCC--EEEEECCCCcHHHH
Confidence 45566778865 57789999999954
No 250
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=34.53 E-value=16 Score=43.87 Aligned_cols=36 Identities=31% Similarity=0.412 Sum_probs=26.1
Q ss_pred hhHHHhhHHHHHHh-hcCcceeEEecccCCCCcceee
Q 006826 146 EDVFVEVEPILRSA-LDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 146 ~eVf~~v~plV~sv-l~GyN~~IfaYGqTGSGKTyTM 181 (630)
-.||.-......++ -++.|-||+..|.+|||||.+.
T Consensus 153 PHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~ 189 (1010)
T 1g8x_A 153 PHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENT 189 (1010)
T ss_dssp CCHHHHHHHHHHHHHHHTCCEEEEEEESTTSSHHHHH
T ss_pred ccHHHHHHHHHHHHHhcCCCeEEEEeCCCCCCcchHH
Confidence 34675443333333 3799999999999999999874
No 251
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=34.49 E-value=17 Score=42.39 Aligned_cols=35 Identities=26% Similarity=0.426 Sum_probs=24.9
Q ss_pred hHHHhhHHHHHHh-hcCcceeEEecccCCCCcceee
Q 006826 147 DVFVEVEPILRSA-LDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 147 eVf~~v~plV~sv-l~GyN~~IfaYGqTGSGKTyTM 181 (630)
.||.-........ -++.|-||+.-|.+|||||.+.
T Consensus 153 HifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~t 188 (783)
T 4db1_A 153 HIFSISDNAYQYMLTDRENQSILITGESGAGKTVNT 188 (783)
T ss_dssp CHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred hhhHHHHHHHHHHHhhCCCceEEEeCCCCCCCchHH
Confidence 3554433333333 3799999999999999999874
No 252
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=34.47 E-value=16 Score=43.73 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=19.4
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcce
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTF 179 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTy 179 (630)
...+..+++|.| +++.|+||||||.
T Consensus 62 ~~ai~~il~g~d--vlv~apTGSGKTl 86 (1054)
T 1gku_B 62 KMWAKRILRKES--FAATAPTGVGKTS 86 (1054)
T ss_dssp HHHHHHHHTTCC--EECCCCBTSCSHH
T ss_pred HHHHHHHHhCCC--EEEEcCCCCCHHH
Confidence 456667788876 4677899999995
No 253
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=34.44 E-value=13 Score=43.37 Aligned_cols=27 Identities=33% Similarity=0.397 Sum_probs=19.2
Q ss_pred HHHHHhhcCcceeEEecccCCCCcceeec
Q 006826 154 PILRSALDGHNVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 154 plV~svl~GyN~~IfaYGqTGSGKTyTM~ 182 (630)
..|..++.+ ..++..|+.|||||+|+.
T Consensus 363 ~Av~~~l~~--~~~lI~GppGTGKT~ti~ 389 (800)
T 2wjy_A 363 YAVKTVLQR--PLSLIQGPPGTGKTVTSA 389 (800)
T ss_dssp HHHHHHHTS--SEEEEECCTTSCHHHHHH
T ss_pred HHHHHhccC--CeEEEEcCCCCCHHHHHH
Confidence 345555543 345778999999999974
No 254
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=34.42 E-value=1.1e+02 Score=24.73 Aligned_cols=26 Identities=12% Similarity=0.081 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 432 REIRMAELEEDMREAEAECQNVRNQI 457 (630)
Q Consensus 432 ~~~~i~~L~~el~~l~~e~~~l~~qi 457 (630)
++..|.+|+.++.+++.....+..++
T Consensus 27 K~~~i~~LE~~v~~le~~~~~l~~en 52 (70)
T 1gd2_E 27 KEDHLKALETQVVTLKELHSSTTLEN 52 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666555444444333
No 255
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=34.31 E-value=16 Score=43.57 Aligned_cols=35 Identities=31% Similarity=0.466 Sum_probs=25.8
Q ss_pred hHHHhhHHHHHHh-hcCcceeEEecccCCCCcceee
Q 006826 147 DVFVEVEPILRSA-LDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 147 eVf~~v~plV~sv-l~GyN~~IfaYGqTGSGKTyTM 181 (630)
.||.-......++ -++.|-||+.-|.+|||||.+.
T Consensus 128 HifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~ 163 (995)
T 2ycu_A 128 HVYAVTEGAYRSMLQDREDQSILCTGESGAGKTENT 163 (995)
T ss_dssp CHHHHHHHHHHHHHHHCCCEEEEEECBTTSSHHHHH
T ss_pred hHHHHhHHHHHHHHhcCCCcEEEecCCCCCCchhhH
Confidence 4665443333333 3799999999999999999875
No 256
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=34.19 E-value=9.1 Score=36.52 Aligned_cols=16 Identities=56% Similarity=0.588 Sum_probs=13.5
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
.+.-.|++|||||..+
T Consensus 32 ~~~l~GpnGsGKSTLl 47 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFA 47 (251)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 4566899999999987
No 257
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=34.19 E-value=9.1 Score=35.26 Aligned_cols=16 Identities=31% Similarity=0.455 Sum_probs=13.5
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
.|.-.|+.|||||.++
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4566899999999876
No 258
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=33.98 E-value=18 Score=36.97 Aligned_cols=27 Identities=19% Similarity=0.289 Sum_probs=19.0
Q ss_pred HHHHhhcCc-ceeEEecccCCCCcceee
Q 006826 155 ILRSALDGH-NVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 155 lV~svl~Gy-N~~IfaYGqTGSGKTyTM 181 (630)
+...+-.|. .-.++-||+.|+|||.+.
T Consensus 14 l~~~i~~~~~~~a~L~~G~~G~GKt~~a 41 (334)
T 1a5t_A 14 LVASYQAGRGHHALLIQALPGMGDDALI 41 (334)
T ss_dssp HHHHHHTTCCCSEEEEECCTTSCHHHHH
T ss_pred HHHHHHcCCcceeEEEECCCCchHHHHH
Confidence 333444453 446888999999999875
No 259
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=33.89 E-value=16 Score=40.25 Aligned_cols=27 Identities=30% Similarity=0.452 Sum_probs=19.2
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
..++..+..|. -|+-||++|+|||+..
T Consensus 32 ~~l~~al~~~~--~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 32 RLCLLAALSGE--SVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHHHTC--EEEEECCSSSSHHHHH
T ss_pred HHHHHHHhcCC--eeEeecCchHHHHHHH
Confidence 33444455554 4677999999999976
No 260
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=33.87 E-value=1.1e+02 Score=26.82 Aligned_cols=42 Identities=12% Similarity=0.166 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 427 DLKKRREIRMAELEEDMREAEAECQNVRNQIKEVESLLSEKK 468 (630)
Q Consensus 427 ~~~~~~~~~i~~L~~el~~l~~e~~~l~~qi~~~e~~l~e~~ 468 (630)
+.....+.++..++..+..+++.+..++.++..++..+++..
T Consensus 88 eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~ 129 (133)
T 1fxk_C 88 DAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445567778888888888888888888888877776654
No 261
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=33.79 E-value=11 Score=40.41 Aligned_cols=26 Identities=12% Similarity=0.116 Sum_probs=18.3
Q ss_pred HHHHhhcCcceeEEecccCCCCcceeec
Q 006826 155 ILRSALDGHNVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 155 lV~svl~GyN~~IfaYGqTGSGKTyTM~ 182 (630)
.|..++.|.+ ++..|+||||||.+..
T Consensus 121 ai~~~~~~~~--~ll~~~tGsGKT~~~~ 146 (510)
T 2oca_A 121 AVFEGLVNRR--RILNLPTSAGRSLIQA 146 (510)
T ss_dssp HHHHHHHHSE--EEEECCSTTTHHHHHH
T ss_pred HHHHHHhcCC--cEEEeCCCCCHHHHHH
Confidence 3444555544 4667999999999863
No 262
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=33.72 E-value=14 Score=41.31 Aligned_cols=28 Identities=29% Similarity=0.342 Sum_probs=20.0
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceeec
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM~ 182 (630)
...|..++.+ ..++..|..|||||+++.
T Consensus 195 ~~Av~~~~~~--~~~~I~G~pGTGKTt~i~ 222 (574)
T 3e1s_A 195 ASVLDQLAGH--RLVVLTGGPGTGKSTTTK 222 (574)
T ss_dssp HHHHHHHTTC--SEEEEECCTTSCHHHHHH
T ss_pred HHHHHHHHhC--CEEEEEcCCCCCHHHHHH
Confidence 3455566654 456678999999999873
No 263
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=33.61 E-value=17 Score=43.65 Aligned_cols=36 Identities=22% Similarity=0.365 Sum_probs=26.8
Q ss_pred hhHHHhhHHHHHHh-hcCcceeEEecccCCCCcceee
Q 006826 146 EDVFVEVEPILRSA-LDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 146 ~eVf~~v~plV~sv-l~GyN~~IfaYGqTGSGKTyTM 181 (630)
-.||.-........ -++.|-||+.-|.+|||||.+.
T Consensus 125 PHIfaiA~~AY~~M~~~~~nQsIiiSGESGAGKTest 161 (1052)
T 4anj_A 125 PHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENT 161 (1052)
T ss_dssp SCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred CcHHHHHHHHHHHHHHhCCCceEEEecCCCCCHHHHH
Confidence 35776554333443 3799999999999999999875
No 264
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=33.44 E-value=11 Score=38.73 Aligned_cols=17 Identities=47% Similarity=0.622 Sum_probs=13.9
Q ss_pred eeEEecccCCCCcceee
Q 006826 165 VCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM 181 (630)
..|.-.|++|||||.++
T Consensus 103 ~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 35556699999999998
No 265
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=33.35 E-value=11 Score=36.12 Aligned_cols=16 Identities=25% Similarity=0.347 Sum_probs=9.2
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
.|.-.|++|||||.++
T Consensus 29 ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVA 44 (231)
T ss_dssp EEEEECSCC----CHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3555799999999886
No 266
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=33.31 E-value=1.8e+02 Score=28.06 Aligned_cols=19 Identities=16% Similarity=0.281 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 006826 444 REAEAECQNVRNQIKEVES 462 (630)
Q Consensus 444 ~~l~~e~~~l~~qi~~~e~ 462 (630)
..|.+++..++++|..+++
T Consensus 118 ~~Lh~~ie~l~eEi~~Lke 136 (209)
T 2wvr_A 118 EKLHKEIEQKDNEIARLKK 136 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 267
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=33.28 E-value=14 Score=37.01 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=19.1
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
..+.. +.. ..++.||+.|+|||..+
T Consensus 23 ~~L~~--l~~--~~v~i~G~~G~GKT~L~ 47 (357)
T 2fna_A 23 EKLKG--LRA--PITLVLGLRRTGKSSII 47 (357)
T ss_dssp HHHHH--TCS--SEEEEEESTTSSHHHHH
T ss_pred HHHHH--hcC--CcEEEECCCCCCHHHHH
Confidence 44444 554 58899999999999876
No 268
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=33.26 E-value=9 Score=40.07 Aligned_cols=19 Identities=37% Similarity=0.468 Sum_probs=14.6
Q ss_pred cCcceeEEecccCCCCcceee
Q 006826 161 DGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 161 ~GyN~~IfaYGqTGSGKTyTM 181 (630)
.|.+.+ -.|+||||||.++
T Consensus 174 ~G~~i~--ivG~sGsGKSTll 192 (361)
T 2gza_A 174 LERVIV--VAGETGSGKTTLM 192 (361)
T ss_dssp TTCCEE--EEESSSSCHHHHH
T ss_pred cCCEEE--EECCCCCCHHHHH
Confidence 566544 4499999999987
No 269
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=33.01 E-value=12 Score=34.15 Aligned_cols=17 Identities=29% Similarity=0.405 Sum_probs=14.1
Q ss_pred eeEEecccCCCCcceee
Q 006826 165 VCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM 181 (630)
..|+-.|..|||||+..
T Consensus 4 ~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35788999999999854
No 270
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=32.81 E-value=9.2 Score=39.54 Aligned_cols=19 Identities=47% Similarity=0.700 Sum_probs=14.8
Q ss_pred cCcceeEEecccCCCCcceee
Q 006826 161 DGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 161 ~GyN~~IfaYGqTGSGKTyTM 181 (630)
.|.+ +.-.|+||||||.++
T Consensus 170 ~g~~--v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 170 IGKN--VIVCGGTGSGKTTYI 188 (330)
T ss_dssp HTCC--EEEEESTTSCHHHHH
T ss_pred CCCE--EEEECCCCCCHHHHH
Confidence 4554 456699999999987
No 271
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=32.78 E-value=12 Score=34.97 Aligned_cols=16 Identities=31% Similarity=0.347 Sum_probs=13.8
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
.|+-.|.+|||||...
T Consensus 27 ~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLG 42 (199)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5778899999999865
No 272
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=32.77 E-value=71 Score=24.31 Aligned_cols=25 Identities=12% Similarity=0.259 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 438 ELEEDMREAEAECQNVRNQIKEVES 462 (630)
Q Consensus 438 ~L~~el~~l~~e~~~l~~qi~~~e~ 462 (630)
.|+.++.+++.++..|..+++++..
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555544444443
No 273
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=32.73 E-value=1.1e+02 Score=22.38 Aligned_cols=29 Identities=21% Similarity=0.275 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 439 LEEDMREAEAECQNVRNQIKEVESLLSEK 467 (630)
Q Consensus 439 L~~el~~l~~e~~~l~~qi~~~e~~l~e~ 467 (630)
|-+.|.....|+...+++|.+++..+.+.
T Consensus 7 l~qkI~kVdrEI~Kte~kI~~lqkKlkeL 35 (42)
T 2l5g_B 7 LIQNMDRVDREITMVEQQISKLKKKQQQL 35 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555544433
No 274
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=32.68 E-value=1.9e+02 Score=23.46 Aligned_cols=26 Identities=12% Similarity=0.349 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 435 RMAELEEDMREAEAECQNVRNQIKEV 460 (630)
Q Consensus 435 ~i~~L~~el~~l~~e~~~l~~qi~~~ 460 (630)
++++++.+...++..++.++.+++..
T Consensus 8 kLq~~E~~N~~Le~~v~~le~~Le~s 33 (72)
T 3cve_A 8 KLQEVEIRNKDLEGQLSEMEQRLEKS 33 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34444444444555555444444433
No 275
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=32.65 E-value=86 Score=26.03 Aligned_cols=28 Identities=18% Similarity=0.444 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 439 LEEDMREAEAECQNVRNQIKEVESLLSE 466 (630)
Q Consensus 439 L~~el~~l~~e~~~l~~qi~~~e~~l~e 466 (630)
++.++++.+..++.|..+++.+++.+++
T Consensus 43 ~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 43 FASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555554444444444433
No 276
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=32.65 E-value=1.2e+02 Score=26.81 Aligned_cols=32 Identities=19% Similarity=0.417 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 436 MAELEEDMREAEAECQNVRNQIKEVESLLSEK 467 (630)
Q Consensus 436 i~~L~~el~~l~~e~~~l~~qi~~~e~~l~e~ 467 (630)
+.++...+..++.+++.++.+...++..+.+.
T Consensus 38 i~elrr~iq~L~~el~~l~~~~~~LE~~l~e~ 69 (129)
T 3tnu_B 38 ISEMNRMIQRLRAEIDNVKKQCANLQNAIADA 69 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 44444444444455544444444444444443
No 277
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=32.53 E-value=69 Score=26.37 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 435 RMAELEEDMREAEAECQNVRNQIKEVESLLSEKKKL 470 (630)
Q Consensus 435 ~i~~L~~el~~l~~e~~~l~~qi~~~e~~l~e~~~~ 470 (630)
...+++.+..+|+.|+..|+.++..++.++.....+
T Consensus 37 r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~l 72 (78)
T 1gu4_A 37 RNLETQHKVLELTAENERLQKKVEQLSRELSTLRNL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677778888888888888887777666544433
No 278
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=32.43 E-value=1.2e+02 Score=24.56 Aligned_cols=30 Identities=20% Similarity=0.356 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 439 LEEDMREAEAECQNVRNQIKEVESLLSEKK 468 (630)
Q Consensus 439 L~~el~~l~~e~~~l~~qi~~~e~~l~e~~ 468 (630)
+..++..++.+++.|+.++..++..+++-+
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le~s~ 34 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLEKSQ 34 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555554433
No 279
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=32.37 E-value=47 Score=23.07 Aligned_cols=29 Identities=21% Similarity=0.492 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 436 MAELEEDMREAEAECQNVRNQIKEVESLL 464 (630)
Q Consensus 436 i~~L~~el~~l~~e~~~l~~qi~~~e~~l 464 (630)
+.+|+.++.++-.+...|.+++..+.+++
T Consensus 3 MnQLEdKvEeLl~~~~~L~~EV~RLk~lL 31 (34)
T 2bni_A 3 MKQIEDKLEEILSKGHHICNELARIKKLL 31 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 34455555555555555555555554443
No 280
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=32.29 E-value=68 Score=22.29 Aligned_cols=30 Identities=17% Similarity=0.376 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 436 MAELEEDMREAEAECQNVRNQIKEVESLLS 465 (630)
Q Consensus 436 i~~L~~el~~l~~e~~~l~~qi~~~e~~l~ 465 (630)
+.+|+.++.++-.+...+.+++..+.+++.
T Consensus 3 MnQledKvEel~~~~~~l~nEv~Rl~~lLg 32 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANELARVAKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 445555666666666666666666555543
No 281
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=32.22 E-value=11 Score=41.44 Aligned_cols=27 Identities=33% Similarity=0.556 Sum_probs=20.3
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
..+|..+++|.++ ++.++||||||.+.
T Consensus 31 ~~~i~~il~g~d~--lv~apTGsGKTl~~ 57 (523)
T 1oyw_A 31 EEIIDTVLSGRDC--LVVMPTGGGKSLCY 57 (523)
T ss_dssp HHHHHHHHTTCCE--EEECSCHHHHHHHH
T ss_pred HHHHHHHHcCCCE--EEECCCCcHHHHHH
Confidence 4566777889875 45579999999854
No 282
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=32.14 E-value=12 Score=33.61 Aligned_cols=16 Identities=25% Similarity=0.397 Sum_probs=13.7
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
.|.-.|..|||||+..
T Consensus 6 ~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 5778999999999865
No 283
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=32.11 E-value=1.6e+02 Score=22.21 Aligned_cols=11 Identities=18% Similarity=0.299 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 006826 447 EAECQNVRNQI 457 (630)
Q Consensus 447 ~~e~~~l~~qi 457 (630)
.+.++..+++|
T Consensus 29 ~~~L~~AR~el 39 (51)
T 3m91_A 29 METLKEARQQL 39 (51)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 284
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=32.02 E-value=51 Score=22.80 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 438 ELEEDMREAEAECQNVRNQIKEVESL 463 (630)
Q Consensus 438 ~L~~el~~l~~e~~~l~~qi~~~e~~ 463 (630)
+|+.+..++-.+...|++++..+.++
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~L 29 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKKL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 44555555555555555555444443
No 285
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=32.00 E-value=2.3e+02 Score=23.93 Aligned_cols=33 Identities=18% Similarity=0.232 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006826 443 MREAEAECQNVRNQIKEVESLLSEKKKLFSAAC 475 (630)
Q Consensus 443 l~~l~~e~~~l~~qi~~~e~~l~e~~~~~~~~~ 475 (630)
....+.++..|+..+..++..++.....+....
T Consensus 39 ~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~ 71 (101)
T 3u59_A 39 CKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQ 71 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443333333333
No 286
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=31.96 E-value=86 Score=23.84 Aligned_cols=25 Identities=4% Similarity=0.041 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 443 MREAEAECQNVRNQIKEVESLLSEK 467 (630)
Q Consensus 443 l~~l~~e~~~l~~qi~~~e~~l~e~ 467 (630)
+..|+.|+..|+.++..+.+.++|.
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el 45 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKL 45 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444333
No 287
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=31.82 E-value=12 Score=36.86 Aligned_cols=15 Identities=47% Similarity=0.514 Sum_probs=12.7
Q ss_pred eEEecccCCCCccee
Q 006826 166 CVLAYGQTGTGKTFT 180 (630)
Q Consensus 166 ~IfaYGqTGSGKTyT 180 (630)
.|+..|++|||||..
T Consensus 3 li~I~G~~GSGKSTl 17 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDM 17 (253)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 467889999999974
No 288
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=31.72 E-value=11 Score=35.68 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=14.2
Q ss_pred HhhcCcceeEEecccCCCCcceee
Q 006826 158 SALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 158 svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
.+-.|- ++.-.|++|||||.++
T Consensus 16 ~i~~Ge--i~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGR--VVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCC--EEEEECSTTSSHHHHH
T ss_pred CCCCCC--EEEEECCCCCCHHHHH
Confidence 334454 3445699999999887
No 289
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=31.55 E-value=13 Score=33.15 Aligned_cols=16 Identities=13% Similarity=0.023 Sum_probs=13.4
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
.|+-.|..|||||+..
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999999864
No 290
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=31.34 E-value=14 Score=33.94 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=16.2
Q ss_pred cCcceeEEecccCCCCcceee
Q 006826 161 DGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 161 ~GyN~~IfaYGqTGSGKTyTM 181 (630)
.+....|.-.|.+|||||+..
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVA 25 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHH
T ss_pred ccCceEEEEECCCCCCHHHHH
Confidence 445567888999999999754
No 291
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=31.28 E-value=13 Score=41.94 Aligned_cols=20 Identities=25% Similarity=0.268 Sum_probs=16.6
Q ss_pred cceeEEecccCCCCcceeec
Q 006826 163 HNVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 163 yN~~IfaYGqTGSGKTyTM~ 182 (630)
.+..++..|..|||||+||.
T Consensus 14 ~~~~~lV~AgaGSGKT~~l~ 33 (673)
T 1uaa_A 14 VTGPCLVLAGAGSGKTRVIT 33 (673)
T ss_dssp CSSEEEECCCTTSCHHHHHH
T ss_pred CCCCEEEEeCCCCChHHHHH
Confidence 35567888999999999985
No 292
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=31.17 E-value=13 Score=42.13 Aligned_cols=25 Identities=40% Similarity=0.523 Sum_probs=17.7
Q ss_pred HHHH-hhcCcceeEEecccCCCCcceee
Q 006826 155 ILRS-ALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 155 lV~s-vl~GyN~~IfaYGqTGSGKTyTM 181 (630)
++.. +.+|.| ++..|+||||||...
T Consensus 31 ~i~~~~~~~~~--~lv~apTGsGKT~~~ 56 (720)
T 2zj8_A 31 ALKSGILEGKN--ALISIPTASGKTLIA 56 (720)
T ss_dssp HHTTTGGGTCE--EEEECCGGGCHHHHH
T ss_pred HHHHHhcCCCc--EEEEcCCccHHHHHH
Confidence 3444 456655 677899999999764
No 293
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=30.86 E-value=11 Score=35.75 Aligned_cols=16 Identities=38% Similarity=0.530 Sum_probs=13.7
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
.|.-.|+.|||||.++
T Consensus 3 ~i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLI 18 (189)
T ss_dssp CEEEESCCSSCHHHHH
T ss_pred EEEEECCCCChHHHHH
Confidence 4667899999999987
No 294
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=30.84 E-value=1.5e+02 Score=31.58 Aligned_cols=10 Identities=40% Similarity=0.484 Sum_probs=5.1
Q ss_pred EeEEEecCCC
Q 006826 319 KLWMVDLGGS 328 (630)
Q Consensus 319 kL~lVDLAGS 328 (630)
.|..+||.|.
T Consensus 238 ~L~~L~l~~N 247 (487)
T 3oja_A 238 NLEHFDLRGN 247 (487)
T ss_dssp TCCEEECTTC
T ss_pred CCCEEEcCCC
Confidence 3455555554
No 295
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=30.63 E-value=1.4e+02 Score=31.80 Aligned_cols=46 Identities=15% Similarity=0.333 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 006826 435 RMAELEEDMREAEAECQNVRNQIKEVESLLSEKKKLFSAACQSLED 480 (630)
Q Consensus 435 ~i~~L~~el~~l~~e~~~l~~qi~~~e~~l~e~~~~~~~~~~~l~~ 480 (630)
++..|+++..+++++++.++.+++++++.+.+.+.+.......+++
T Consensus 11 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~e 56 (403)
T 4etp_A 11 KIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQE 56 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555666666666655555555554444444333333333
No 296
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=30.58 E-value=16 Score=38.91 Aligned_cols=16 Identities=25% Similarity=0.229 Sum_probs=13.6
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
-++..|+||||||...
T Consensus 4 ~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 4 LTVLDLHPGAGKTRRV 19 (431)
T ss_dssp EEEEECCTTSCTTTTH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4678899999999884
No 297
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=30.55 E-value=14 Score=39.65 Aligned_cols=15 Identities=27% Similarity=0.248 Sum_probs=12.5
Q ss_pred eEEecccCCCCccee
Q 006826 166 CVLAYGQTGTGKTFT 180 (630)
Q Consensus 166 ~IfaYGqTGSGKTyT 180 (630)
-++..|+||||||..
T Consensus 23 ~vlv~a~TGsGKT~~ 37 (459)
T 2z83_A 23 MTVLDLHPGSGKTRK 37 (459)
T ss_dssp EEEECCCTTSCTTTT
T ss_pred cEEEECCCCCCHHHH
Confidence 346779999999988
No 298
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=30.55 E-value=11 Score=36.15 Aligned_cols=15 Identities=27% Similarity=0.545 Sum_probs=12.4
Q ss_pred EEecccCCCCcceee
Q 006826 167 VLAYGQTGTGKTFTM 181 (630)
Q Consensus 167 IfaYGqTGSGKTyTM 181 (630)
+.-.|++|||||..+
T Consensus 26 ~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 26 LVICGPSGVGKGTLI 40 (218)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445699999999877
No 299
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=30.51 E-value=21 Score=41.61 Aligned_cols=72 Identities=25% Similarity=0.372 Sum_probs=43.5
Q ss_pred EEeceeeCCCCChhhHHHhh-HHHHH-HhhcCcc----eeEEecccCCCCcceeec------CC-----------CCCCC
Q 006826 133 FGFDKVFNQAASQEDVFVEV-EPILR-SALDGHN----VCVLAYGQTGTGKTFTMD------GT-----------SDQPG 189 (630)
Q Consensus 133 F~FD~VF~~~atQ~eVf~~v-~plV~-svl~GyN----~~IfaYGqTGSGKTyTM~------G~-----------~~~~G 189 (630)
..||.|-+-+..-+++.+.| -|+-. ..+.++. ..|+-||+.|+|||...- |. ....|
T Consensus 201 v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~g 280 (806)
T 3cf2_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAG 280 (806)
T ss_dssp CCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTT
T ss_pred CChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccch
Confidence 46676665554444444433 33332 2344443 469999999999997641 11 23457
Q ss_pred chhHHHHHHHHHHhc
Q 006826 190 IVPRALEELFRQAAL 204 (630)
Q Consensus 190 IIpRal~~LF~~~~~ 204 (630)
-....++.+|..+..
T Consensus 281 ese~~lr~lF~~A~~ 295 (806)
T 3cf2_A 281 ESESNLRKAFEEAEK 295 (806)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHH
Confidence 777888888887643
No 300
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=30.39 E-value=18 Score=37.30 Aligned_cols=16 Identities=38% Similarity=0.596 Sum_probs=13.7
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
+|...|++|+|||+|+
T Consensus 107 vI~ivG~~G~GKTT~~ 122 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSL 122 (320)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5666799999999997
No 301
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=30.38 E-value=25 Score=35.62 Aligned_cols=20 Identities=30% Similarity=0.542 Sum_probs=15.6
Q ss_pred CcceeEEecccCCCCcceee
Q 006826 162 GHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 162 GyN~~IfaYGqTGSGKTyTM 181 (630)
+....|.-.|.+|||||+.+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTS 48 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 34456777899999999876
No 302
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=30.14 E-value=14 Score=39.42 Aligned_cols=21 Identities=24% Similarity=0.233 Sum_probs=16.1
Q ss_pred hhcCcceeEEecccCCCCcceee
Q 006826 159 ALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 159 vl~GyN~~IfaYGqTGSGKTyTM 181 (630)
+++|.|+ +..|+||||||...
T Consensus 5 l~~g~~v--lv~a~TGSGKT~~~ 25 (440)
T 1yks_A 5 LKKGMTT--VLDFHPGAGKTRRF 25 (440)
T ss_dssp TSTTCEE--EECCCTTSSTTTTH
T ss_pred hhCCCCE--EEEcCCCCCHHHHH
Confidence 3466664 67789999999984
No 303
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=29.82 E-value=66 Score=22.35 Aligned_cols=29 Identities=10% Similarity=0.265 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 436 MAELEEDMREAEAECQNVRNQIKEVESLL 464 (630)
Q Consensus 436 i~~L~~el~~l~~e~~~l~~qi~~~e~~l 464 (630)
+.+|+....+|-.+...|.+++..+.+.+
T Consensus 3 MnQLEdkVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 3 VKQLADAVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 34455555555555555555555555444
No 304
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=29.77 E-value=91 Score=37.56 Aligned_cols=20 Identities=35% Similarity=0.699 Sum_probs=11.5
Q ss_pred cCcceeEEecccCCCCccee
Q 006826 161 DGHNVCVLAYGQTGTGKTFT 180 (630)
Q Consensus 161 ~GyN~~IfaYGqTGSGKTyT 180 (630)
++.|-||+..|.+|||||.+
T Consensus 153 ~~~~QsIiisGESGAGKTe~ 172 (1080)
T 2dfs_A 153 DERNQSIIVSGESGAGKTVS 172 (1080)
T ss_dssp HTCCEEEEEECSTTSSHHHH
T ss_pred cCCCcEEEEcCCCCCCccch
Confidence 45556666666666666544
No 305
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=29.73 E-value=9.7 Score=36.33 Aligned_cols=17 Identities=18% Similarity=0.151 Sum_probs=14.5
Q ss_pred eEEecccCCCCcceeec
Q 006826 166 CVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM~ 182 (630)
.++-||..|||||..+.
T Consensus 10 i~v~~G~mgsGKTT~ll 26 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELI 26 (191)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 57889999999998764
No 306
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=29.69 E-value=13 Score=42.38 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=16.1
Q ss_pred HhhcCcceeEEecccCCCCccee
Q 006826 158 SALDGHNVCVLAYGQTGTGKTFT 180 (630)
Q Consensus 158 svl~GyN~~IfaYGqTGSGKTyT 180 (630)
..++|.+ |+..|+||||||+.
T Consensus 151 r~l~rk~--vlv~apTGSGKT~~ 171 (677)
T 3rc3_A 151 RAMQRKI--IFHSGPTNSGKTYH 171 (677)
T ss_dssp HTSCCEE--EEEECCTTSSHHHH
T ss_pred HhcCCCE--EEEEcCCCCCHHHH
Confidence 4456654 57889999999984
No 307
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=29.65 E-value=15 Score=33.49 Aligned_cols=16 Identities=31% Similarity=0.501 Sum_probs=13.6
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
.|+-.|..|||||+..
T Consensus 5 ~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQC 20 (196)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788899999999754
No 308
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=29.52 E-value=12 Score=33.80 Aligned_cols=16 Identities=25% Similarity=0.443 Sum_probs=13.6
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
.|+-.|..|||||..+
T Consensus 10 ~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVA 25 (175)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5777899999999865
No 309
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=29.44 E-value=12 Score=34.26 Aligned_cols=16 Identities=25% Similarity=0.318 Sum_probs=13.6
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
+..-+|++|||||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 5567899999999876
No 310
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=29.29 E-value=1.5e+02 Score=22.74 Aligned_cols=29 Identities=14% Similarity=0.270 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 434 IRMAELEEDMREAEAECQNVRNQIKEVES 462 (630)
Q Consensus 434 ~~i~~L~~el~~l~~e~~~l~~qi~~~e~ 462 (630)
..+..|+.+...|..++..|+.++..+..
T Consensus 29 ~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 29 KKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555544443
No 311
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=29.29 E-value=16 Score=32.71 Aligned_cols=29 Identities=21% Similarity=0.408 Sum_probs=21.3
Q ss_pred HHHHHHhhc-CcceeEEecccCCCCcceee
Q 006826 153 EPILRSALD-GHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 153 ~plV~svl~-GyN~~IfaYGqTGSGKTyTM 181 (630)
..+++.++. ....-|...|.+|+|||..+
T Consensus 6 ~~~~~~~~~~~~~~~i~v~G~~~~GKssli 35 (183)
T 1moz_A 6 SSMFDKLWGSNKELRILILGLDGAGKTTIL 35 (183)
T ss_dssp HHHHGGGTTCSSCEEEEEEEETTSSHHHHH
T ss_pred HHHHHHhcCCCCccEEEEECCCCCCHHHHH
Confidence 344555555 56677888999999999765
No 312
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=29.23 E-value=20 Score=40.60 Aligned_cols=25 Identities=32% Similarity=0.553 Sum_probs=17.5
Q ss_pred HHHH-hhcCcceeEEecccCCCCcceee
Q 006826 155 ILRS-ALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 155 lV~s-vl~GyN~~IfaYGqTGSGKTyTM 181 (630)
.+.. +.+|. .++..|+||||||...
T Consensus 38 ~i~~~~~~~~--~~lv~apTGsGKT~~~ 63 (715)
T 2va8_A 38 AVKKGLLEGN--RLLLTSPTGSGKTLIA 63 (715)
T ss_dssp HHHTTTTTTC--CEEEECCTTSCHHHHH
T ss_pred HHHHHhcCCC--cEEEEcCCCCcHHHHH
Confidence 3444 34554 4577889999999885
No 313
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=29.11 E-value=15 Score=38.30 Aligned_cols=24 Identities=25% Similarity=0.511 Sum_probs=21.2
Q ss_pred HhhcCcceeEEecccCCCCcceee
Q 006826 158 SALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 158 svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
.+..|++..|...|.+|+|||..+
T Consensus 31 ~~~~~~~~~I~vvG~~g~GKSTLl 54 (361)
T 2qag_A 31 SVKKGFEFTLMVVGESGLGKSTLI 54 (361)
T ss_dssp HHHHCCEECEEECCCTTSCHHHHH
T ss_pred eecCCCCEEEEEEcCCCCCHHHHH
Confidence 457899999999999999999765
No 314
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=29.01 E-value=15 Score=33.37 Aligned_cols=16 Identities=31% Similarity=0.499 Sum_probs=13.6
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
.|+-.|..|||||+..
T Consensus 6 ~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQA 21 (186)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788899999999754
No 315
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=29.00 E-value=31 Score=35.07 Aligned_cols=16 Identities=44% Similarity=0.619 Sum_probs=13.3
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
.|...|..|+|||.++
T Consensus 100 vi~i~G~~G~GKTT~~ 115 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTA 115 (297)
T ss_dssp EEEEECSSCSSTTHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4555699999999987
No 316
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=28.92 E-value=14 Score=33.66 Aligned_cols=17 Identities=29% Similarity=0.413 Sum_probs=14.4
Q ss_pred eeEEecccCCCCcceee
Q 006826 165 VCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM 181 (630)
..|+..|..|||||+..
T Consensus 6 ~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLS 22 (193)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46888999999999864
No 317
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=28.70 E-value=13 Score=42.03 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=17.1
Q ss_pred HHhhcCcceeEEecccCCCCcceee
Q 006826 157 RSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 157 ~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
..+++|.|+ +..|+||||||...
T Consensus 35 ~~i~~~~~~--lv~apTGsGKT~~~ 57 (702)
T 2p6r_A 35 EKVFSGKNL--LLAMPTAAGKTLLA 57 (702)
T ss_dssp HHHTTCSCE--EEECSSHHHHHHHH
T ss_pred HHHhCCCcE--EEEcCCccHHHHHH
Confidence 445566654 67789999999875
No 318
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=28.63 E-value=24 Score=42.65 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=20.2
Q ss_pred HHHHHHhhcCcceeEEecccCCCCccee
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFT 180 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyT 180 (630)
...+..++.|.| +++.++||||||..
T Consensus 84 ~~ai~~il~g~d--vlv~ApTGSGKTl~ 109 (1104)
T 4ddu_A 84 RLWAKRIVQGKS--FTMVAPTGVGKTTF 109 (1104)
T ss_dssp HHHHHHHTTTCC--EEECCSTTCCHHHH
T ss_pred HHHHHHHHcCCC--EEEEeCCCCcHHHH
Confidence 345667788876 57888999999983
No 319
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=28.59 E-value=1.2e+02 Score=27.06 Aligned_cols=26 Identities=27% Similarity=0.264 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 438 ELEEDMREAEAECQNVRNQIKEVESL 463 (630)
Q Consensus 438 ~L~~el~~l~~e~~~l~~qi~~~e~~ 463 (630)
++...+..++.+++.++.+...++..
T Consensus 42 elrr~iq~L~~el~~l~~~~~sLE~~ 67 (131)
T 3tnu_A 42 ELRRTMQNLEIELQSQLSMKASLENS 67 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 33333334444444433333333333
No 320
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=28.52 E-value=15 Score=34.42 Aligned_cols=16 Identities=25% Similarity=0.465 Sum_probs=13.1
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
.|+..|++|||||..+
T Consensus 14 ~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999999754
No 321
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=28.43 E-value=17 Score=33.96 Aligned_cols=18 Identities=22% Similarity=0.422 Sum_probs=14.6
Q ss_pred ceeEEecccCCCCcceee
Q 006826 164 NVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 164 N~~IfaYGqTGSGKTyTM 181 (630)
...|...|.+|||||..+
T Consensus 25 g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CEEEEEECSTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456777899999999765
No 322
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=28.42 E-value=17 Score=33.06 Aligned_cols=35 Identities=14% Similarity=0.130 Sum_probs=20.4
Q ss_pred hHHHhhHHHHHHhhc---CcceeEEecccCCCCcceee
Q 006826 147 DVFVEVEPILRSALD---GHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 147 eVf~~v~plV~svl~---GyN~~IfaYGqTGSGKTyTM 181 (630)
.+.+.+..++...-. .....|+..|.+|+|||..+
T Consensus 28 ~l~~~l~~~~~~~~~~~~~~~~~i~vvG~~g~GKSsll 65 (193)
T 2ged_A 28 QWREWIDEKLGGGSGGGGSYQPSIIIAGPQNSGKTSLL 65 (193)
T ss_dssp HHHHHHHHHC--------CCCCEEEEECCTTSSHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCCCCCEEEEECCCCCCHHHHH
Confidence 344444444433322 34457899999999999765
No 323
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=28.39 E-value=13 Score=36.76 Aligned_cols=21 Identities=24% Similarity=0.580 Sum_probs=17.4
Q ss_pred cCcceeEEecccCCCCcceee
Q 006826 161 DGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 161 ~GyN~~IfaYGqTGSGKTyTM 181 (630)
.|+...|+..|.+|+|||..+
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLi 25 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLI 25 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHH
T ss_pred CccEEEEEEECCCCCCHHHHH
Confidence 588999999999999999765
No 324
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=28.35 E-value=15 Score=33.87 Aligned_cols=16 Identities=44% Similarity=0.555 Sum_probs=13.7
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
.|+-.|..|||||+..
T Consensus 12 ~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 12 NILITGTPGTGKTSMA 27 (184)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999854
No 325
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=28.19 E-value=15 Score=32.87 Aligned_cols=16 Identities=25% Similarity=0.303 Sum_probs=13.4
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
.|+-.|..|||||+..
T Consensus 4 ~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVG 19 (173)
T ss_dssp CEEEESCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4778899999999754
No 326
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=27.77 E-value=1.9e+02 Score=22.43 Aligned_cols=29 Identities=17% Similarity=0.319 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 435 RMAELEEDMREAEAECQNVRNQIKEVESL 463 (630)
Q Consensus 435 ~i~~L~~el~~l~~e~~~l~~qi~~~e~~ 463 (630)
.+..|+.+...|..++..|+.++..+...
T Consensus 31 ~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~ 59 (63)
T 2wt7_A 31 ETDQLEDEKSALQTEIANLLKEKEKLEFI 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555444443
No 327
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=27.63 E-value=2.5e+02 Score=23.18 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 436 MAELEEDMREAEAECQNVRNQIKE 459 (630)
Q Consensus 436 i~~L~~el~~l~~e~~~l~~qi~~ 459 (630)
+++++.+...|+..++.++.+++.
T Consensus 15 lq~~E~rN~~Le~~v~~le~~Le~ 38 (79)
T 3cvf_A 15 VQDLETRNAELEHQLRAMERSLEE 38 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 328
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=27.58 E-value=23 Score=42.33 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=20.3
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
...|..++.|.+ ++..++||||||...
T Consensus 92 ~eai~~l~~g~~--vLV~apTGSGKTlva 118 (1010)
T 2xgj_A 92 DTAISCIDRGES--VLVSAHTSAGKTVVA 118 (1010)
T ss_dssp HHHHHHHHHTCE--EEEECCTTSCHHHHH
T ss_pred HHHHHHHHcCCC--EEEECCCCCChHHHH
Confidence 345566677876 577889999999863
No 329
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=27.57 E-value=14 Score=37.97 Aligned_cols=17 Identities=35% Similarity=0.597 Sum_probs=14.9
Q ss_pred eeEEecccCCCCcceee
Q 006826 165 VCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM 181 (630)
..|+..|++|+|||.|+
T Consensus 105 ~vi~ivG~~GsGKTTl~ 121 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSC 121 (306)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 46778899999999998
No 330
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=27.41 E-value=1.3e+02 Score=24.17 Aligned_cols=32 Identities=22% Similarity=0.369 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 433 EIRMAELEEDMREAEAECQNVRNQIKEVESLL 464 (630)
Q Consensus 433 ~~~i~~L~~el~~l~~e~~~l~~qi~~~e~~l 464 (630)
+.++.+|+.....+..|+..|+.++..+..++
T Consensus 35 E~~v~~le~~~~~l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 35 ETQVVTLKELHSSTTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555556666665555554443
No 331
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=27.36 E-value=2.1e+02 Score=24.87 Aligned_cols=9 Identities=11% Similarity=0.139 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 006826 445 EAEAECQNV 453 (630)
Q Consensus 445 ~l~~e~~~l 453 (630)
++.+++..+
T Consensus 22 ~L~~ei~eL 30 (106)
T 4e61_A 22 SLNEEIEQY 30 (106)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 332
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=27.29 E-value=20 Score=43.22 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=20.3
Q ss_pred HHHHHHhhcCcceeEEecccCCCCccee
Q 006826 153 EPILRSALDGHNVCVLAYGQTGTGKTFT 180 (630)
Q Consensus 153 ~plV~svl~GyN~~IfaYGqTGSGKTyT 180 (630)
...|..++.|.++ +..|+||||||..
T Consensus 190 ~~AI~~i~~g~dv--LV~ApTGSGKTlv 215 (1108)
T 3l9o_A 190 DTAISCIDRGESV--LVSAHTSAGKTVV 215 (1108)
T ss_dssp HHHHHHHTTTCCE--EEECCSSSHHHHH
T ss_pred HHHHHHHHcCCCE--EEECCCCCChHHH
Confidence 4566677888764 7889999999976
No 333
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=27.19 E-value=15 Score=33.17 Aligned_cols=16 Identities=38% Similarity=0.565 Sum_probs=13.3
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
..+-+|++|||||..|
T Consensus 25 ~~~I~G~NGsGKStil 40 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3467899999999876
No 334
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=26.99 E-value=29 Score=37.37 Aligned_cols=18 Identities=39% Similarity=0.501 Sum_probs=15.1
Q ss_pred eeEEecccCCCCcceeec
Q 006826 165 VCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM~ 182 (630)
..|...|++|+|||++..
T Consensus 100 ~vI~ivG~~GvGKTTla~ 117 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAA 117 (432)
T ss_dssp CCEEEECCSSSSTTHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 367778999999999973
No 335
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=26.77 E-value=2e+02 Score=23.77 Aligned_cols=37 Identities=11% Similarity=0.155 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 432 REIRMAELEEDMREAEAECQNVRNQIKEVESLLSEKK 468 (630)
Q Consensus 432 ~~~~i~~L~~el~~l~~e~~~l~~qi~~~e~~l~e~~ 468 (630)
...++..|+.+++.|+..++.+..+++.+.....+.-
T Consensus 25 Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y 61 (83)
T 2xdj_A 25 LQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIL 61 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3446667777777777777777766666655444433
No 336
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=26.76 E-value=14 Score=35.67 Aligned_cols=17 Identities=24% Similarity=0.411 Sum_probs=14.6
Q ss_pred eeEEecccCCCCcceee
Q 006826 165 VCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM 181 (630)
-.|+-.|+.|||||+.+
T Consensus 28 ~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46788899999999876
No 337
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=26.70 E-value=17 Score=34.84 Aligned_cols=16 Identities=44% Similarity=0.702 Sum_probs=13.5
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
.++-+|..|||||+.+
T Consensus 7 i~l~tG~pGsGKT~~a 22 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKM 22 (199)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 3567899999999975
No 338
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=26.65 E-value=18 Score=32.70 Aligned_cols=17 Identities=35% Similarity=0.434 Sum_probs=10.1
Q ss_pred eeEEecccCCCCcceee
Q 006826 165 VCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM 181 (630)
..|+-.|..|||||+..
T Consensus 6 ~~I~l~G~~GsGKST~a 22 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTA 22 (183)
T ss_dssp CEEEEECCC----CHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35788999999999854
No 339
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=26.64 E-value=16 Score=33.10 Aligned_cols=16 Identities=25% Similarity=0.416 Sum_probs=13.4
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
.|+-.|..|||||+..
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778899999999754
No 340
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=26.59 E-value=17 Score=33.15 Aligned_cols=15 Identities=27% Similarity=0.412 Sum_probs=12.9
Q ss_pred eEEecccCCCCccee
Q 006826 166 CVLAYGQTGTGKTFT 180 (630)
Q Consensus 166 ~IfaYGqTGSGKTyT 180 (630)
.|+-.|..|||||+.
T Consensus 4 ~I~l~G~~GsGKsT~ 18 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTI 18 (184)
T ss_dssp SEEEECSTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 477889999999975
No 341
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=26.54 E-value=3.3e+02 Score=23.86 Aligned_cols=48 Identities=25% Similarity=0.342 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhh
Q 006826 435 RMAELEEDMREAEAECQNVRNQIKEVESLLSEKKKLFSAACQSLEDEE 482 (630)
Q Consensus 435 ~i~~L~~el~~l~~e~~~l~~qi~~~e~~l~e~~~~~~~~~~~l~~e~ 482 (630)
.+..|+.++..++.....+...|.++|..-...++....+...+++-+
T Consensus 36 ~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E 83 (111)
T 2v66_B 36 QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFE 83 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHH
Confidence 455677777777777777777777777766666666555555565555
No 342
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=26.46 E-value=2.8e+02 Score=23.08 Aligned_cols=36 Identities=14% Similarity=0.131 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 436 MAELEEDMREAEAECQNVRNQIKEVESLLSEKKKLF 471 (630)
Q Consensus 436 i~~L~~el~~l~~e~~~l~~qi~~~e~~l~e~~~~~ 471 (630)
+.+--++...|.+++..+++++..++.+.++.+.+.
T Consensus 41 L~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~ela 76 (83)
T 1uii_A 41 LYEALKENEKLHKEIEQKDNEIARLKKENKELAEVA 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555666666666666666665555544443
No 343
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=25.95 E-value=17 Score=33.26 Aligned_cols=16 Identities=25% Similarity=0.457 Sum_probs=13.6
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
.|+-.|..|||||+..
T Consensus 14 ~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQC 29 (199)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788899999999754
No 344
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=25.78 E-value=1e+02 Score=26.60 Aligned_cols=31 Identities=19% Similarity=0.263 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 435 RMAELEEDMREAEAECQNVRNQIKEVESLLS 465 (630)
Q Consensus 435 ~i~~L~~el~~l~~e~~~l~~qi~~~e~~l~ 465 (630)
.+..|..++..|+.|...|++++..+|..++
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le 43 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLE 43 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888888888888877777664
No 345
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=25.75 E-value=18 Score=35.19 Aligned_cols=22 Identities=36% Similarity=0.448 Sum_probs=16.6
Q ss_pred hcCcceeEEecccCCCCcceee
Q 006826 160 LDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 160 l~GyN~~IfaYGqTGSGKTyTM 181 (630)
++-+...|+-.|+||||||...
T Consensus 30 v~~~g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 30 VDIYGLGVLITGDSGVGKSETA 51 (205)
T ss_dssp EEETTEEEEEECCCTTTTHHHH
T ss_pred EEECCEEEEEECCCCCCHHHHH
Confidence 3444566888999999999764
No 346
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=25.73 E-value=53 Score=22.84 Aligned_cols=27 Identities=15% Similarity=0.351 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 437 AELEEDMREAEAECQNVRNQIKEVESL 463 (630)
Q Consensus 437 ~~L~~el~~l~~e~~~l~~qi~~~e~~ 463 (630)
.+|+.+..++-.+...|.+++..+.++
T Consensus 4 ~QLEdKVEeLl~~n~~Le~EV~RLk~L 30 (34)
T 1uo4_A 4 KQIEDKGEEILSKLYHIENELARIKKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 344444555555555555444444443
No 347
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=25.69 E-value=18 Score=32.74 Aligned_cols=16 Identities=25% Similarity=0.391 Sum_probs=13.1
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
.|+-.|+.|||||+.-
T Consensus 6 ~i~i~G~~GsGKsTla 21 (175)
T 1via_A 6 NIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4677899999999853
No 348
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=25.56 E-value=2.2e+02 Score=24.07 Aligned_cols=33 Identities=6% Similarity=0.169 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 435 RMAELEEDMREAEAECQNVRNQIKEVESLLSEK 467 (630)
Q Consensus 435 ~i~~L~~el~~l~~e~~~l~~qi~~~e~~l~e~ 467 (630)
++..|+.+...+..+++.|+.++..+...+...
T Consensus 49 q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~ 81 (90)
T 2wt7_B 49 QKHHLENEKTQLIQQVEQLKQEVSRLARERDAY 81 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666665555554444333
No 349
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=25.47 E-value=19 Score=32.17 Aligned_cols=16 Identities=19% Similarity=0.158 Sum_probs=13.2
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
.|+-.|..|||||+..
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4778899999999754
No 350
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=25.44 E-value=16 Score=34.11 Aligned_cols=16 Identities=38% Similarity=0.569 Sum_probs=13.2
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
.|.-.|+.|||||..+
T Consensus 31 ~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIA 46 (200)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4666799999999875
No 351
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=25.42 E-value=15 Score=34.33 Aligned_cols=16 Identities=31% Similarity=0.291 Sum_probs=13.1
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
.|--.|++|||||..+
T Consensus 8 ~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 8 VIGIAGGTASGKTTLA 23 (211)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556799999999876
No 352
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=25.41 E-value=19 Score=33.50 Aligned_cols=18 Identities=22% Similarity=0.379 Sum_probs=14.6
Q ss_pred ceeEEecccCCCCcceee
Q 006826 164 NVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 164 N~~IfaYGqTGSGKTyTM 181 (630)
...|+-.|..|||||+..
T Consensus 18 ~~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SSCEEEECSTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 346888999999999854
No 353
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=25.34 E-value=15 Score=41.16 Aligned_cols=17 Identities=35% Similarity=0.583 Sum_probs=14.8
Q ss_pred eeEEecccCCCCcceee
Q 006826 165 VCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM 181 (630)
.-++..|.||||||+++
T Consensus 215 pHlLIaG~TGSGKS~~L 231 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGV 231 (574)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CeeEEECCCCCCHHHHH
Confidence 45788999999999987
No 354
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=25.16 E-value=26 Score=40.76 Aligned_cols=72 Identities=26% Similarity=0.360 Sum_probs=40.9
Q ss_pred EEEeceeeCCCCChhhHHHhh-HHHHH-Hhhc----CcceeEEecccCCCCcceeecC---C--------------CCCC
Q 006826 132 EFGFDKVFNQAASQEDVFVEV-EPILR-SALD----GHNVCVLAYGQTGTGKTFTMDG---T--------------SDQP 188 (630)
Q Consensus 132 ~F~FD~VF~~~atQ~eVf~~v-~plV~-svl~----GyN~~IfaYGqTGSGKTyTM~G---~--------------~~~~ 188 (630)
.+.||.|.+.+..-+.+.+.+ .|+.. .++. .....|+-||++|+|||+.+-. . ....
T Consensus 200 ~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~ 279 (806)
T 1ypw_A 200 EVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 279 (806)
T ss_dssp SCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSST
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhhh
Confidence 467777776655444444444 22221 1222 1234588999999999987521 1 1234
Q ss_pred CchhHHHHHHHHHHh
Q 006826 189 GIVPRALEELFRQAA 203 (630)
Q Consensus 189 GIIpRal~~LF~~~~ 203 (630)
|-....+..+|+...
T Consensus 280 g~~~~~l~~vf~~a~ 294 (806)
T 1ypw_A 280 GESESNLRKAFEEAE 294 (806)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH
Confidence 555666777776553
No 355
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=25.00 E-value=2.2e+02 Score=21.47 Aligned_cols=38 Identities=16% Similarity=0.264 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 434 IRMAELEEDMREAEAECQNVRNQIKEVESLLSEKKKLF 471 (630)
Q Consensus 434 ~~i~~L~~el~~l~~e~~~l~~qi~~~e~~l~e~~~~~ 471 (630)
.+++.|..|...++.|+++--.++.++|.+-..++..+
T Consensus 10 ~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevl 47 (54)
T 1deb_A 10 KQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVL 47 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHH
Confidence 45666777777777777777777777766555554443
No 356
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=24.92 E-value=25 Score=40.73 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=15.7
Q ss_pred HHHhhcCcceeEEecccCCCCccee
Q 006826 156 LRSALDGHNVCVLAYGQTGTGKTFT 180 (630)
Q Consensus 156 V~svl~GyN~~IfaYGqTGSGKTyT 180 (630)
|..++.|.. .++..|+||||||..
T Consensus 102 i~~~l~~~~-~vii~gpTGSGKTtl 125 (773)
T 2xau_A 102 FLKLYQNNQ-IMVFVGETGSGKTTQ 125 (773)
T ss_dssp HHHHHHHCS-EEEEECCTTSSHHHH
T ss_pred HHHHHhCCC-eEEEECCCCCCHHHH
Confidence 334444322 356679999999994
No 357
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=24.91 E-value=17 Score=43.62 Aligned_cols=16 Identities=38% Similarity=0.420 Sum_probs=13.1
Q ss_pred EEecccCCCCcceeec
Q 006826 167 VLAYGQTGTGKTFTMD 182 (630)
Q Consensus 167 IfaYGqTGSGKTyTM~ 182 (630)
.+...+||||||+||+
T Consensus 303 gli~~~TGSGKT~t~~ 318 (1038)
T 2w00_A 303 GYIWHTTGSGKTLTSF 318 (1038)
T ss_dssp EEEEECTTSSHHHHHH
T ss_pred EEEEecCCCCHHHHHH
Confidence 4566789999999984
No 358
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=24.89 E-value=21 Score=37.37 Aligned_cols=15 Identities=40% Similarity=0.567 Sum_probs=13.3
Q ss_pred eEEecccCCCCccee
Q 006826 166 CVLAYGQTGTGKTFT 180 (630)
Q Consensus 166 ~IfaYGqTGSGKTyT 180 (630)
.|+-.|+||||||..
T Consensus 42 lIvI~GPTgsGKTtL 56 (339)
T 3a8t_A 42 LLVLMGATGTGKSRL 56 (339)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 688899999999974
No 359
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=24.87 E-value=3.1e+02 Score=23.09 Aligned_cols=24 Identities=21% Similarity=0.470 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 439 LEEDMREAEAECQNVRNQIKEVES 462 (630)
Q Consensus 439 L~~el~~l~~e~~~l~~qi~~~e~ 462 (630)
|...+..++.++..+..++.....
T Consensus 49 L~kKiq~lE~eld~~~e~l~~a~~ 72 (101)
T 3u59_A 49 LQKKLKGTEDEVEKYSESVKEAQE 72 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 360
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=24.78 E-value=1.9e+02 Score=24.47 Aligned_cols=33 Identities=21% Similarity=0.267 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 439 LEEDMREAEAECQNVRNQIKEVESLLSEKKKLF 471 (630)
Q Consensus 439 L~~el~~l~~e~~~l~~qi~~~e~~l~e~~~~~ 471 (630)
|+..+..++.++..+..++..++..+.+.+..+
T Consensus 75 L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l 107 (117)
T 2zqm_A 75 LKEKIETLEVRLNALERQEKKLNEKLKELTAQI 107 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444333
No 361
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=24.47 E-value=1.3e+02 Score=25.15 Aligned_cols=41 Identities=17% Similarity=0.161 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCC
Q 006826 53 NELEQSIINLEGEIVELRLKKRRLDEKRREALNKILDIKGC 93 (630)
Q Consensus 53 ~~l~~~~~~l~~~~~~l~~~~~~~~~~Rr~l~n~~~elkG~ 93 (630)
.+++..+..|+.+...|+.++..+..+-..|.+.|..+.+.
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~~ 79 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPEP 79 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHH
Confidence 46788888999999999999888888777777777777664
No 362
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=24.45 E-value=20 Score=35.20 Aligned_cols=17 Identities=24% Similarity=0.395 Sum_probs=14.3
Q ss_pred eeEEecccCCCCcceee
Q 006826 165 VCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM 181 (630)
..|+..|..|||||+..
T Consensus 5 ~lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFS 21 (260)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 36888999999999854
No 363
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=24.45 E-value=20 Score=33.28 Aligned_cols=17 Identities=24% Similarity=0.446 Sum_probs=14.0
Q ss_pred eeEEecccCCCCcceee
Q 006826 165 VCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM 181 (630)
..|+-.|..|||||+..
T Consensus 16 ~~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35788899999999754
No 364
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=24.43 E-value=19 Score=32.68 Aligned_cols=16 Identities=31% Similarity=0.519 Sum_probs=13.4
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
.|+-.|..|||||+..
T Consensus 8 ~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778899999999854
No 365
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=24.39 E-value=3e+02 Score=22.76 Aligned_cols=22 Identities=27% Similarity=0.438 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 006826 433 EIRMAELEEDMREAEAECQNVR 454 (630)
Q Consensus 433 ~~~i~~L~~el~~l~~e~~~l~ 454 (630)
+..+.+|+++...+.++.+.++
T Consensus 26 qmEieELKekN~~L~~e~~e~~ 47 (81)
T 2jee_A 26 QMEIEELKEKNNSLSQEVQNAQ 47 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555444444433
No 366
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=24.19 E-value=17 Score=33.33 Aligned_cols=16 Identities=38% Similarity=0.449 Sum_probs=13.6
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
++.-.|+.|||||..+
T Consensus 35 ~v~L~G~nGaGKTTLl 50 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLT 50 (158)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5667799999999877
No 367
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=24.19 E-value=19 Score=34.32 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=14.0
Q ss_pred eeEEecccCCCCcceee
Q 006826 165 VCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM 181 (630)
..|+-.|..|||||+..
T Consensus 8 ~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35788899999999854
No 368
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=24.17 E-value=20 Score=32.79 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=13.9
Q ss_pred eeEEecccCCCCcceee
Q 006826 165 VCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM 181 (630)
..|+-.|..|||||+..
T Consensus 10 ~~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQC 26 (196)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 35778899999999854
No 369
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=24.02 E-value=2.7e+02 Score=24.30 Aligned_cols=14 Identities=14% Similarity=0.036 Sum_probs=7.4
Q ss_pred CCCCcHHHhHHHHH
Q 006826 397 PCEEDVGETICSLS 410 (630)
Q Consensus 397 P~~~~~~ETlsTLr 410 (630)
.....|+.++..||
T Consensus 13 ~~~~~ye~~I~~LR 26 (119)
T 3ol1_A 13 RLGDLYEEEMRELR 26 (119)
T ss_dssp CCTHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHH
Confidence 33444555666555
No 370
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=23.97 E-value=1.1e+02 Score=24.85 Aligned_cols=29 Identities=7% Similarity=0.171 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 436 MAELEEDMREAEAECQNVRNQIKEVESLL 464 (630)
Q Consensus 436 i~~L~~el~~l~~e~~~l~~qi~~~e~~l 464 (630)
|..|+.+...++.++..|+.++..++..+
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555554444
No 371
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=23.96 E-value=18 Score=40.06 Aligned_cols=18 Identities=28% Similarity=0.279 Sum_probs=15.0
Q ss_pred ceeEEecccCCCCcceee
Q 006826 164 NVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 164 N~~IfaYGqTGSGKTyTM 181 (630)
...++-||++|+|||+++
T Consensus 108 g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp SCEEEEESSSSSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 336788999999999876
No 372
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=23.92 E-value=18 Score=35.03 Aligned_cols=16 Identities=19% Similarity=0.358 Sum_probs=13.1
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
.+.-.|++|||||..+
T Consensus 18 ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLI 33 (219)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556799999999876
No 373
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=23.90 E-value=1.2e+02 Score=26.48 Aligned_cols=37 Identities=24% Similarity=0.283 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 006826 53 NELEQSIINLEGEIVELRLKKRRLDEKRREALNKILD 89 (630)
Q Consensus 53 ~~l~~~~~~l~~~~~~l~~~~~~~~~~Rr~l~n~~~e 89 (630)
.+..+++..|..++.+|+......+.+|-=++++|.+
T Consensus 14 ~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRd 50 (106)
T 4e61_A 14 TKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRD 50 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556678888889999999999999999988888765
No 374
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=23.89 E-value=99 Score=21.58 Aligned_cols=22 Identities=9% Similarity=0.277 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 006826 437 AELEEDMREAEAECQNVRNQIK 458 (630)
Q Consensus 437 ~~L~~el~~l~~e~~~l~~qi~ 458 (630)
...+++|.+++.++..|+.|+.
T Consensus 10 ~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 10 DTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHhhHHHHHHHHHHHHHHHH
Confidence 3444455555555555554443
No 375
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=23.85 E-value=21 Score=33.51 Aligned_cols=15 Identities=27% Similarity=0.481 Sum_probs=12.5
Q ss_pred EEecccCCCCcceee
Q 006826 167 VLAYGQTGTGKTFTM 181 (630)
Q Consensus 167 IfaYGqTGSGKTyTM 181 (630)
|+-.|..|||||+..
T Consensus 3 I~l~G~~GsGKsT~a 17 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQA 17 (216)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 566899999999764
No 376
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=23.81 E-value=20 Score=33.81 Aligned_cols=16 Identities=25% Similarity=0.393 Sum_probs=13.4
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
.|+-.|..|||||+..
T Consensus 6 ~I~l~G~~GsGKsT~a 21 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQA 21 (220)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999753
No 377
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=23.80 E-value=1.3e+02 Score=19.23 Aligned_cols=20 Identities=30% Similarity=0.400 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006826 54 ELEQSIINLEGEIVELRLKK 73 (630)
Q Consensus 54 ~l~~~~~~l~~~~~~l~~~~ 73 (630)
+|-.+++.+|+.+..|+.++
T Consensus 5 elykeledlqerlrklrkkl 24 (27)
T 3twe_A 5 ELYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555554444
No 378
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=23.75 E-value=23 Score=36.71 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=13.7
Q ss_pred eeEEecccCCCCcceee
Q 006826 165 VCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM 181 (630)
-.|+..|+||||||...
T Consensus 11 ~~i~i~GptgsGKt~la 27 (316)
T 3foz_A 11 KAIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCccCHHHHH
Confidence 35778999999999653
No 379
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=23.74 E-value=18 Score=35.35 Aligned_cols=16 Identities=31% Similarity=0.559 Sum_probs=13.0
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
++.-.|++|||||..|
T Consensus 33 ~~~iiG~nGsGKSTLl 48 (235)
T 3tif_A 33 FVSIMGPSGSGKSTML 48 (235)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4556799999999876
No 380
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=23.71 E-value=23 Score=33.60 Aligned_cols=26 Identities=38% Similarity=0.530 Sum_probs=18.8
Q ss_pred HHHhhc-Cc--ceeEEecccCCCCcceee
Q 006826 156 LRSALD-GH--NVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 156 V~svl~-Gy--N~~IfaYGqTGSGKTyTM 181 (630)
++.++. |+ ...+..+|.+|+|||..+
T Consensus 19 LD~~l~GGl~~G~l~~i~G~pG~GKT~l~ 47 (251)
T 2zts_A 19 FDELIEGGFPEGTTVLLTGGTGTGKTTFA 47 (251)
T ss_dssp TGGGTTTSEETTCEEEEECCTTSSHHHHH
T ss_pred HHHhhcCCCCCCeEEEEEeCCCCCHHHHH
Confidence 456665 43 445778999999999653
No 381
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=23.70 E-value=27 Score=36.28 Aligned_cols=16 Identities=31% Similarity=0.395 Sum_probs=13.7
Q ss_pred eeEEecccCCCCccee
Q 006826 165 VCVLAYGQTGTGKTFT 180 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyT 180 (630)
-.|+-.|+||||||..
T Consensus 6 ~~i~i~GptGsGKTtl 21 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDL 21 (323)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 3688899999999974
No 382
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=23.62 E-value=3.5e+02 Score=23.16 Aligned_cols=23 Identities=17% Similarity=0.466 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 006826 436 MAELEEDMREAEAECQNVRNQIK 458 (630)
Q Consensus 436 i~~L~~el~~l~~e~~~l~~qi~ 458 (630)
+..|+.++...+.++..|...+.
T Consensus 14 l~~le~~~~~~~~e~~~L~~~l~ 36 (97)
T 2eqb_B 14 YNTLKRELSDRDDEVKRLREDIA 36 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHH
Confidence 44444444444444444444433
No 383
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=23.58 E-value=32 Score=34.78 Aligned_cols=28 Identities=36% Similarity=0.350 Sum_probs=20.7
Q ss_pred HHHHHhhc-Cc--ceeEEecccCCCCcceee
Q 006826 154 PILRSALD-GH--NVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 154 plV~svl~-Gy--N~~IfaYGqTGSGKTyTM 181 (630)
+-++.++. |+ ...+.-||++|||||..+
T Consensus 85 ~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la 115 (322)
T 2i1q_A 85 SELDSVLGGGLESQSVTEFAGVFGSGKTQIM 115 (322)
T ss_dssp HHHHHHTTSSEETTEEEEEEESTTSSHHHHH
T ss_pred hhHHHhcCCCccCCeEEEEECCCCCCHHHHH
Confidence 45667775 33 356888999999999865
No 384
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=23.41 E-value=3.2e+02 Score=22.72 Aligned_cols=37 Identities=8% Similarity=0.081 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 435 RMAELEEDMREAEAECQNVRNQIKEVESLLSEKKKLF 471 (630)
Q Consensus 435 ~i~~L~~el~~l~~e~~~l~~qi~~~e~~l~e~~~~~ 471 (630)
-+.+-.++..+|.+++..++++|..+++..++.+.+.
T Consensus 32 AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA 68 (83)
T 1wlq_A 32 ALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVA 68 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555666666655555555554444443
No 385
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=23.22 E-value=3.1e+02 Score=24.30 Aligned_cols=10 Identities=30% Similarity=0.374 Sum_probs=3.9
Q ss_pred HHHHHHhhcc
Q 006826 409 LSFAKRARGI 418 (630)
Q Consensus 409 LrFA~rar~I 418 (630)
|+--..++++
T Consensus 17 LrAq~ECrN~ 26 (121)
T 3mq7_A 17 LRAVMEARNV 26 (121)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhH
Confidence 3333334333
No 386
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=23.12 E-value=22 Score=33.73 Aligned_cols=14 Identities=29% Similarity=0.472 Sum_probs=12.2
Q ss_pred EEecccCCCCccee
Q 006826 167 VLAYGQTGTGKTFT 180 (630)
Q Consensus 167 IfaYGqTGSGKTyT 180 (630)
|+.+|.+|||||.-
T Consensus 2 ilV~Gg~~SGKS~~ 15 (180)
T 1c9k_A 2 ILVTGGARSGKSRH 15 (180)
T ss_dssp EEEEECTTSSHHHH
T ss_pred EEEECCCCCcHHHH
Confidence 78899999999953
No 387
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=23.11 E-value=22 Score=34.55 Aligned_cols=35 Identities=17% Similarity=0.270 Sum_probs=20.2
Q ss_pred eEEecccCCCCcceeecCCCCCCCchhHHHHHHHH
Q 006826 166 CVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFR 200 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM~G~~~~~GIIpRal~~LF~ 200 (630)
.||..|+.||||+.--.=-....|+..-..-+||.
T Consensus 31 iI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR 65 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLR 65 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHH
Confidence 47888999999986421001122444445555554
No 388
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=23.09 E-value=35 Score=35.26 Aligned_cols=16 Identities=25% Similarity=0.254 Sum_probs=13.6
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
.|.--|++|||||+++
T Consensus 94 iigI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5667799999999886
No 389
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=23.07 E-value=29 Score=39.30 Aligned_cols=86 Identities=21% Similarity=0.378 Sum_probs=49.1
Q ss_pred EEEeceeeCCCCChhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceeecCCC---CCCCch----hHHHHHHHHHHhc
Q 006826 132 EFGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMDGTS---DQPGIV----PRALEELFRQAAL 204 (630)
Q Consensus 132 ~F~FD~VF~~~atQ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM~G~~---~~~GII----pRal~~LF~~~~~ 204 (630)
.|..-.=|.|...|..-+.. +++.+-.|... ....|.|||||||+|-.-- ..|-|| ...+.+|+..+..
T Consensus 4 ~~~~~~~~~p~~~Q~~~i~~---l~~~~~~~~~~-~~l~g~~gs~k~~~~a~~~~~~~~~~lvv~~~~~~A~~l~~el~~ 79 (661)
T 2d7d_A 4 RFELVSKYQPQGDQPKAIEK---LVKGIQEGKKH-QTLLGATGTGKTFTVSNLIKEVNKPTLVIAHNKTLAGQLYSEFKE 79 (661)
T ss_dssp CCCCCCSCCCCTTHHHHHHH---HHHHHHTTCSE-EEEEECTTSCHHHHHHHHHHHHCCCEEEECSSHHHHHHHHHHHHH
T ss_pred cceeecCCCCCCCCHHHHHH---HHHHHhcCCCc-EEEECcCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHH
Confidence 36666668888888877654 55565666532 3456999999999995310 112111 1234445544332
Q ss_pred C-CCceEEEEEeEEEEec
Q 006826 205 D-NSSSVTFSMSMLEVYM 221 (630)
Q Consensus 205 ~-~~~~~~v~vS~lEIYn 221 (630)
- ++..+.+..||+.-|.
T Consensus 80 ~~~~~~v~~fps~yd~~~ 97 (661)
T 2d7d_A 80 FFPNNAVEYFVSYYDYYQ 97 (661)
T ss_dssp HCTTSEEEEECCCEEEEE
T ss_pred HcCCCcEEEccccccccC
Confidence 2 2335666677655553
No 390
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=23.06 E-value=38 Score=34.87 Aligned_cols=28 Identities=29% Similarity=0.267 Sum_probs=21.7
Q ss_pred HHHHHhhc-Cc--ceeEEecccCCCCcceee
Q 006826 154 PILRSALD-GH--NVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 154 plV~svl~-Gy--N~~IfaYGqTGSGKTyTM 181 (630)
+-++.++. |+ ...+.-||++|||||..+
T Consensus 109 ~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla 139 (343)
T 1v5w_A 109 QEFDKLLGGGIESMAITEAFGEFRTGKTQLS 139 (343)
T ss_dssp HHHHHHTTSSBCSSEEEEEECCTTCTHHHHH
T ss_pred hhHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 55788886 43 346788999999999875
No 391
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=22.90 E-value=33 Score=37.67 Aligned_cols=36 Identities=22% Similarity=0.288 Sum_probs=21.2
Q ss_pred CCCChhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 141 QAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 141 ~~atQ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
+-.-|.++-.. +...+..|.++ ++-.+||+|||.+.
T Consensus 8 ~r~~Q~~~~~~---v~~~~~~~~~~--~~~a~TGtGKT~~~ 43 (540)
T 2vl7_A 8 LRQWQAEKLGE---AINALKHGKTL--LLNAKPGLGKTVFV 43 (540)
T ss_dssp -CCHHHHHHHH---HHHHHHTTCEE--EEECCTTSCHHHHH
T ss_pred CCHHHHHHHHH---HHHHHHcCCCE--EEEcCCCCcHHHHH
Confidence 33445544433 33444577655 45568999999765
No 392
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=22.90 E-value=32 Score=35.06 Aligned_cols=28 Identities=29% Similarity=0.372 Sum_probs=21.2
Q ss_pred HHHHHhhcC-c--ceeEEecccCCCCcceee
Q 006826 154 PILRSALDG-H--NVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 154 plV~svl~G-y--N~~IfaYGqTGSGKTyTM 181 (630)
+-++.++.| + ...+.-||++|||||..+
T Consensus 94 ~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la 124 (324)
T 2z43_A 94 QALDGLLAGGIETRTMTEFFGEFGSGKTQLC 124 (324)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHH
T ss_pred hhHHHhcCCCCCCCcEEEEECCCCCCHhHHH
Confidence 556777754 3 346788999999999865
No 393
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=22.75 E-value=22 Score=32.97 Aligned_cols=28 Identities=21% Similarity=0.228 Sum_probs=19.7
Q ss_pred HHHHHh-hcCcceeEEecccCCCCcceee
Q 006826 154 PILRSA-LDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 154 plV~sv-l~GyN~~IfaYGqTGSGKTyTM 181 (630)
++++.+ +.-...-|...|..|+|||..+
T Consensus 14 ~~l~~~~~~~~~~ki~lvG~~~vGKSsLi 42 (198)
T 1f6b_A 14 SVLQFLGLYKKTGKLVFLGLDNAGKTTLL 42 (198)
T ss_dssp HHHHHHTCTTCCEEEEEEEETTSSHHHHH
T ss_pred HHHHHhhccCCCcEEEEECCCCCCHHHHH
Confidence 445554 3334456788899999999876
No 394
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=22.74 E-value=22 Score=34.09 Aligned_cols=34 Identities=21% Similarity=0.397 Sum_probs=20.9
Q ss_pred EEecccCCCCcceeecCCCCCCCchhHHHHHHHH
Q 006826 167 VLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFR 200 (630)
Q Consensus 167 IfaYGqTGSGKTyTM~G~~~~~GIIpRal~~LF~ 200 (630)
|+-.|+.||||++--.=-....|+..-..-+||+
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR 36 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILR 36 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHH
Confidence 6778999999985321001223566666666665
No 395
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=22.71 E-value=3.2e+02 Score=22.45 Aligned_cols=17 Identities=29% Similarity=0.561 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006826 438 ELEEDMREAEAECQNVR 454 (630)
Q Consensus 438 ~L~~el~~l~~e~~~l~ 454 (630)
.+.+.+...++|++.|+
T Consensus 15 rl~E~~~q~qaEl~sLr 31 (78)
T 3iv1_A 15 RMKEEMDRAQAELNALK 31 (78)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHH
Confidence 45555556666665554
No 396
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=22.70 E-value=26 Score=32.45 Aligned_cols=20 Identities=35% Similarity=0.546 Sum_probs=15.6
Q ss_pred CcceeEEecccCCCCcceee
Q 006826 162 GHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 162 GyN~~IfaYGqTGSGKTyTM 181 (630)
.....|+-.|..|||||+..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQA 37 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 33456888999999999854
No 397
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=22.57 E-value=19 Score=39.87 Aligned_cols=17 Identities=29% Similarity=0.513 Sum_probs=14.3
Q ss_pred eeEEecccCCCCcceee
Q 006826 165 VCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM 181 (630)
.-++..|.||||||..+
T Consensus 168 pHlLIaG~TGSGKSt~L 184 (512)
T 2ius_A 168 PHLLVAGTTGSGASVGV 184 (512)
T ss_dssp CSEEEECCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35678899999999976
No 398
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=22.38 E-value=22 Score=40.71 Aligned_cols=19 Identities=26% Similarity=0.342 Sum_probs=15.7
Q ss_pred ceeEEecccCCCCcceeec
Q 006826 164 NVCVLAYGQTGTGKTFTMD 182 (630)
Q Consensus 164 N~~IfaYGqTGSGKTyTM~ 182 (630)
+..++..|..|||||+||.
T Consensus 24 ~g~~lV~AgAGSGKT~vL~ 42 (724)
T 1pjr_A 24 EGPLLIMAGAGSGKTRVLT 42 (724)
T ss_dssp SSCEEEEECTTSCHHHHHH
T ss_pred CCCEEEEEcCCCCHHHHHH
Confidence 4567778899999999984
No 399
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=22.36 E-value=23 Score=33.24 Aligned_cols=15 Identities=27% Similarity=0.390 Sum_probs=12.5
Q ss_pred EEecccCCCCcceee
Q 006826 167 VLAYGQTGTGKTFTM 181 (630)
Q Consensus 167 IfaYGqTGSGKTyTM 181 (630)
|+-.|..|||||+..
T Consensus 3 I~l~G~~GsGKsT~a 17 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQG 17 (216)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 566899999999764
No 400
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=22.33 E-value=1.6e+02 Score=24.46 Aligned_cols=40 Identities=18% Similarity=0.293 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 006826 53 NELEQSIINLEGEIVELRLKKRRLDEKRREALNKILDIKG 92 (630)
Q Consensus 53 ~~l~~~~~~l~~~~~~l~~~~~~~~~~Rr~l~n~~~elkG 92 (630)
...-.-|..|+.+...+......+......|..+|.+|+|
T Consensus 48 ~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~~ 87 (88)
T 1nkp_A 48 KKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLGG 87 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4444557777777666666666666666777777877776
No 401
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=22.31 E-value=25 Score=36.60 Aligned_cols=16 Identities=44% Similarity=0.383 Sum_probs=13.1
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
.|+..|+||||||...
T Consensus 5 ~i~i~GptgsGKt~la 20 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTS 20 (322)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCcCCHHHHH
Confidence 4677899999999753
No 402
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=22.29 E-value=26 Score=32.09 Aligned_cols=17 Identities=35% Similarity=0.485 Sum_probs=14.1
Q ss_pred eeEEecccCCCCcceee
Q 006826 165 VCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM 181 (630)
..|+-.|..|||||+..
T Consensus 14 ~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 45777899999999865
No 403
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=22.26 E-value=23 Score=33.97 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=14.2
Q ss_pred eeEEecccCCCCcceee
Q 006826 165 VCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM 181 (630)
..|+-.|..|||||+..
T Consensus 17 ~~I~l~G~~GsGKsT~a 33 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQA 33 (233)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45788999999999864
No 404
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=22.14 E-value=32 Score=37.75 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=17.3
Q ss_pred HHHHhhcCcceeEEecccCCCCcceee
Q 006826 155 ILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 155 lV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
+.+.+..|.++ ++-.+||||||.+.
T Consensus 15 v~~~l~~~~~~--~~~a~TGtGKT~~~ 39 (551)
T 3crv_A 15 VIEGLRNNFLV--ALNAPTGSGKTLFS 39 (551)
T ss_dssp HHHHHHTTCEE--EEECCTTSSHHHHH
T ss_pred HHHHHHcCCcE--EEECCCCccHHHHH
Confidence 34455577665 45568999999875
No 405
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=22.01 E-value=4.3e+02 Score=24.80 Aligned_cols=20 Identities=5% Similarity=0.016 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006826 438 ELEEDMREAEAECQNVRNQI 457 (630)
Q Consensus 438 ~L~~el~~l~~e~~~l~~qi 457 (630)
+...++..+++++...+.++
T Consensus 82 e~r~~~~~Lr~ql~akr~EL 101 (175)
T 3lay_A 82 DYYTQTSALRQQLISKRYEY 101 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444433
No 406
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=21.95 E-value=2e+02 Score=25.93 Aligned_cols=42 Identities=19% Similarity=0.281 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 427 DLKKRREIRMAELEEDMREAEAECQNVRNQIKEVESLLSEKK 468 (630)
Q Consensus 427 ~~~~~~~~~i~~L~~el~~l~~e~~~l~~qi~~~e~~l~e~~ 468 (630)
+.....+.++..++..+..++..+..+++++..++..+++..
T Consensus 98 eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~ 139 (151)
T 2zdi_C 98 EAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQ 139 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445567777888888888888888888877777666554
No 407
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=21.90 E-value=27 Score=39.87 Aligned_cols=16 Identities=25% Similarity=0.345 Sum_probs=13.1
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
.++..|+||||||+.+
T Consensus 234 ~vlv~ApTGSGKT~a~ 249 (666)
T 3o8b_A 234 VAHLHAPTGSGKSTKV 249 (666)
T ss_dssp EEEEECCTTSCTTTHH
T ss_pred eEEEEeCCchhHHHHH
Confidence 3577899999999765
No 408
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=21.84 E-value=1.8e+02 Score=19.35 Aligned_cols=27 Identities=30% Similarity=0.535 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 436 MAELEEDMREAEAECQNVRNQIKEVES 462 (630)
Q Consensus 436 i~~L~~el~~l~~e~~~l~~qi~~~e~ 462 (630)
+..|++++.+.++|.-.|.+++..++.
T Consensus 3 vaqlekevaqaeaenyqleqevaqleh 29 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEH 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 345677777777777777666655543
No 409
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=21.82 E-value=34 Score=38.43 Aligned_cols=38 Identities=21% Similarity=0.207 Sum_probs=22.3
Q ss_pred eCCCCChhhHHHhhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006826 139 FNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 139 F~~~atQ~eVf~~v~plV~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
|.+-..|.++-..|. +.+.+|.+ +++-.+||+|||...
T Consensus 2 ~~~R~~Q~~~~~~v~---~~l~~~~~--~~~~apTGtGKT~a~ 39 (620)
T 4a15_A 2 YENRQYQVEAIDFLR---SSLQKSYG--VALESPTGSGKTIMA 39 (620)
T ss_dssp ---CHHHHHHHHHHH---HHHHHSSE--EEEECCTTSCHHHHH
T ss_pred CCCCHHHHHHHHHHH---HHHHcCCC--EEEECCCCCCHHHHH
Confidence 344445655555442 33345655 577779999999774
No 410
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=21.78 E-value=19 Score=31.19 Aligned_cols=16 Identities=25% Similarity=0.393 Sum_probs=13.4
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
-|+..|.+|+|||..+
T Consensus 5 ~i~v~G~~~~GKssl~ 20 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALT 20 (166)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778899999999764
No 411
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=21.77 E-value=24 Score=31.97 Aligned_cols=15 Identities=33% Similarity=0.426 Sum_probs=12.4
Q ss_pred EEecccCCCCcceee
Q 006826 167 VLAYGQTGTGKTFTM 181 (630)
Q Consensus 167 IfaYGqTGSGKTyTM 181 (630)
|.-.|..|||||+..
T Consensus 3 I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 667899999999743
No 412
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=21.63 E-value=25 Score=32.24 Aligned_cols=15 Identities=27% Similarity=0.603 Sum_probs=12.6
Q ss_pred EEecccCCCCcceee
Q 006826 167 VLAYGQTGTGKTFTM 181 (630)
Q Consensus 167 IfaYGqTGSGKTyTM 181 (630)
|.-.|..|||||+..
T Consensus 3 I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 3 IAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCccCHHHHH
Confidence 667899999999754
No 413
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=21.62 E-value=26 Score=39.48 Aligned_cols=24 Identities=17% Similarity=0.034 Sum_probs=18.9
Q ss_pred HHHhhcCcceeEEecccCCCCcceee
Q 006826 156 LRSALDGHNVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 156 V~svl~GyN~~IfaYGqTGSGKTyTM 181 (630)
+..++.|.++ ++.++||||||...
T Consensus 180 i~~l~~g~dv--lv~a~TGSGKT~~~ 203 (618)
T 2whx_A 180 EDIFRKKRLT--IMDLHPGAGKTKRI 203 (618)
T ss_dssp GGGGSTTCEE--EECCCTTSSTTTTH
T ss_pred HHHHhcCCeE--EEEcCCCCCHHHHH
Confidence 5666778775 67789999999983
No 414
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=21.53 E-value=94 Score=31.95 Aligned_cols=28 Identities=25% Similarity=0.303 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 442 DMREAEAECQNVRNQIKEVESLLSEKKK 469 (630)
Q Consensus 442 el~~l~~e~~~l~~qi~~~e~~l~e~~~ 469 (630)
++..++++++.|++++++++.+.+...+
T Consensus 186 eie~L~~~~~~L~eEi~~Le~~~e~~~k 213 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARLEQERSTANK 213 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 5555556666666666555554444333
No 415
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=21.51 E-value=2.7e+02 Score=24.08 Aligned_cols=40 Identities=13% Similarity=0.331 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 006826 439 LEEDMREAEAECQNVRNQIKEVESLLSEKKKLFSAACQSL 478 (630)
Q Consensus 439 L~~el~~l~~e~~~l~~qi~~~e~~l~e~~~~~~~~~~~l 478 (630)
|..+-..+..++.-|++.+.++++.+.+.++.+...+..+
T Consensus 21 LDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~ 60 (103)
T 4h22_A 21 LDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEF 60 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444455555555555554444444444444333
No 416
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=21.40 E-value=2.6e+02 Score=23.60 Aligned_cols=39 Identities=13% Similarity=0.250 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 429 KKRREIRMAELEEDMREAEAECQNVRNQIKEVESLLSEK 467 (630)
Q Consensus 429 ~~~~~~~i~~L~~el~~l~~e~~~l~~qi~~~e~~l~e~ 467 (630)
....+.++..++.++..++..+..++.++.+++..+.+.
T Consensus 72 ~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 72 VAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445666777777777777777777777777666554
No 417
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=21.38 E-value=21 Score=33.42 Aligned_cols=16 Identities=31% Similarity=0.272 Sum_probs=12.7
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
.|.-.|.+|||||..+
T Consensus 6 ~i~i~G~sGsGKTTl~ 21 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLM 21 (169)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3556789999999865
No 418
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=21.34 E-value=2.3e+02 Score=27.82 Aligned_cols=26 Identities=4% Similarity=0.216 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 439 LEEDMREAEAECQNVRNQIKEVESLL 464 (630)
Q Consensus 439 L~~el~~l~~e~~~l~~qi~~~e~~l 464 (630)
++.++.++..++..++..+..++..+
T Consensus 109 lE~eile~~e~ie~~~~~l~~~~~~l 134 (256)
T 3na7_A 109 ANREIENLQNEIKRKSEKQEDLKKEM 134 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 419
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=21.28 E-value=23 Score=32.78 Aligned_cols=16 Identities=25% Similarity=0.306 Sum_probs=13.1
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
.|.-.|..|||||+..
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 3677899999999754
No 420
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=21.12 E-value=25 Score=38.19 Aligned_cols=17 Identities=41% Similarity=0.487 Sum_probs=14.6
Q ss_pred eeEEecccCCCCcceee
Q 006826 165 VCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM 181 (630)
..|+-||++|+|||+..
T Consensus 51 ~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 45899999999999864
No 421
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=21.05 E-value=25 Score=31.47 Aligned_cols=15 Identities=27% Similarity=0.426 Sum_probs=12.8
Q ss_pred eEEecccCCCCccee
Q 006826 166 CVLAYGQTGTGKTFT 180 (630)
Q Consensus 166 ~IfaYGqTGSGKTyT 180 (630)
.|+-.|..|||||..
T Consensus 9 ~i~l~G~~GsGKSTv 23 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSL 23 (168)
T ss_dssp EEEEESCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 577889999999974
No 422
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=21.01 E-value=2.2e+02 Score=29.46 Aligned_cols=32 Identities=13% Similarity=0.135 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 438 ELEEDMREAEAECQNVRNQIKEVESLLSEKKK 469 (630)
Q Consensus 438 ~L~~el~~l~~e~~~l~~qi~~~e~~l~e~~~ 469 (630)
.|+..+...+.+++.|+.+++.++..+++.+.
T Consensus 16 ~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~ 47 (323)
T 1lwu_C 16 ILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQ 47 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555554444444444433
No 423
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=20.95 E-value=25 Score=32.36 Aligned_cols=17 Identities=29% Similarity=0.382 Sum_probs=14.1
Q ss_pred eeEEecccCCCCcceee
Q 006826 165 VCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM 181 (630)
..|+-.|..|||||+..
T Consensus 5 ~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEEcCCCCCHHHHH
Confidence 35778899999999864
No 424
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=20.79 E-value=2.4e+02 Score=23.42 Aligned_cols=40 Identities=15% Similarity=0.222 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006826 49 EQQKNELEQSIINLEGEIVELRLKKRRLDEKRREALNKIL 88 (630)
Q Consensus 49 ~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~Rr~l~n~~~ 88 (630)
+.++.+.+..+..-..+++.|+..+..-+..-+.||.++.
T Consensus 39 EnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l~ 78 (81)
T 3qh9_A 39 ENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQLS 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 3455666666666667777787777777777777777764
No 425
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=20.79 E-value=22 Score=34.11 Aligned_cols=16 Identities=19% Similarity=0.509 Sum_probs=12.8
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
.|.-.|++|+|||..+
T Consensus 21 ~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 21 TLVLIGASGVGRSHIK 36 (197)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4555799999999865
No 426
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=20.76 E-value=75 Score=34.03 Aligned_cols=21 Identities=5% Similarity=0.025 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 006826 440 EEDMREAEAECQNVRNQIKEV 460 (630)
Q Consensus 440 ~~el~~l~~e~~~l~~qi~~~ 460 (630)
+++..+++++++.++.+++++
T Consensus 16 ~~~~~~l~~~~~~~~~~~~~~ 36 (412)
T 3u06_A 16 RQRTEELLRCNEQQAAELETC 36 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 427
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=20.71 E-value=31 Score=35.87 Aligned_cols=27 Identities=33% Similarity=0.438 Sum_probs=19.5
Q ss_pred HHHHhhc--Cc--ceeEEecccCCCCcceee
Q 006826 155 ILRSALD--GH--NVCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 155 lV~svl~--Gy--N~~IfaYGqTGSGKTyTM 181 (630)
-++.++. |+ ...+..||+.|||||..+
T Consensus 48 ~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLa 78 (349)
T 2zr9_A 48 SLDVALGIGGLPRGRVIEIYGPESSGKTTVA 78 (349)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHH
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHH
Confidence 4556665 43 345788999999999875
No 428
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=20.62 E-value=23 Score=35.24 Aligned_cols=26 Identities=15% Similarity=0.279 Sum_probs=18.2
Q ss_pred HHHhhcCcc--eeEEecccCCCCcceee
Q 006826 156 LRSALDGHN--VCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 156 V~svl~GyN--~~IfaYGqTGSGKTyTM 181 (630)
++.+.-|.. -.+.-.|++|+|||..+
T Consensus 25 Ld~i~~~l~~G~~~~i~G~~G~GKTTl~ 52 (296)
T 1cr0_A 25 INDKTLGARGGEVIMVTSGSGMGKSTFV 52 (296)
T ss_dssp HHHHHCSBCTTCEEEEEESTTSSHHHHH
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHH
Confidence 445554442 35677899999999876
No 429
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=20.56 E-value=4e+02 Score=22.76 Aligned_cols=20 Identities=20% Similarity=0.373 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006826 441 EDMREAEAECQNVRNQIKEV 460 (630)
Q Consensus 441 ~el~~l~~e~~~l~~qi~~~ 460 (630)
++++.++.++......+..+
T Consensus 12 e~l~~le~~~~~~~~e~~~L 31 (97)
T 2eqb_B 12 EDYNTLKRELSDRDDEVKRL 31 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHH
Confidence 33333333333333333333
No 430
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=20.45 E-value=22 Score=30.87 Aligned_cols=16 Identities=25% Similarity=0.374 Sum_probs=13.0
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
.|+..|.+|+|||..+
T Consensus 3 ki~v~G~~~~GKSsli 18 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLF 18 (161)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3677899999999765
No 431
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=20.40 E-value=23 Score=36.23 Aligned_cols=17 Identities=24% Similarity=0.272 Sum_probs=13.8
Q ss_pred eeEEecccCCCCcceee
Q 006826 165 VCVLAYGQTGTGKTFTM 181 (630)
Q Consensus 165 ~~IfaYGqTGSGKTyTM 181 (630)
..|--.|++|||||.++
T Consensus 91 ~ivgI~G~sGsGKSTL~ 107 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTA 107 (312)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred EEEEEECCCCchHHHHH
Confidence 35556799999999887
No 432
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=20.37 E-value=25 Score=33.23 Aligned_cols=16 Identities=25% Similarity=0.310 Sum_probs=13.6
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
.|+-.|..|||||...
T Consensus 7 ~I~l~G~~GsGKsT~~ 22 (222)
T 1zak_A 7 KVMISGAPASGKGTQC 22 (222)
T ss_dssp CEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778899999999764
No 433
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=20.30 E-value=1.9e+02 Score=24.73 Aligned_cols=35 Identities=26% Similarity=0.306 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006826 49 EQQKNELEQSIINLEGEIVELRLKKRRLDEKRREA 83 (630)
Q Consensus 49 ~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~Rr~l 83 (630)
.+...+|+.+|..|..+|..|+.-.......|.+.
T Consensus 46 d~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA 80 (96)
T 1t3j_A 46 DMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKA 80 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34567888888888888888887777777666654
No 434
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=20.19 E-value=25 Score=33.35 Aligned_cols=16 Identities=38% Similarity=0.565 Sum_probs=13.2
Q ss_pred eEEecccCCCCcceee
Q 006826 166 CVLAYGQTGTGKTFTM 181 (630)
Q Consensus 166 ~IfaYGqTGSGKTyTM 181 (630)
..+-||++|||||..|
T Consensus 25 ~~~I~G~NgsGKStil 40 (203)
T 3qks_A 25 INLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEEcCCCCCHHHHH
Confidence 4466799999999877
No 435
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=20.17 E-value=51 Score=39.93 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=19.1
Q ss_pred HHHHhhc----CcceeEEecccCCCCccee
Q 006826 155 ILRSALD----GHNVCVLAYGQTGTGKTFT 180 (630)
Q Consensus 155 lV~svl~----GyN~~IfaYGqTGSGKTyT 180 (630)
.|..++. |...-++..|+||||||.+
T Consensus 611 ai~~il~~~~~g~p~d~ll~~~TGsGKT~v 640 (1151)
T 2eyq_A 611 AINAVLSDMCQPLAMDRLVCGDVGFGKTEV 640 (1151)
T ss_dssp HHHHHHHHHHSSSCCEEEEECCCCTTTHHH
T ss_pred HHHHHHHHHhcCCcCcEEEECCCCCCHHHH
Confidence 4444444 7655678899999999965
Done!