BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006827
(630 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DZX|A Chain A, Crystal Structure Of The Rabgap Domain Of Human Tbc1d22b
Length = 346
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 133/290 (45%), Gaps = 45/290 (15%)
Query: 318 DSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSI 377
D + LRK + GV ++R W L GY ++ + R K+ EY Q+
Sbjct: 40 DLDELRK-CSWPGVPREVRPITWRLLSGYLPANTERRKLTLQR--KREEYFGFIEQYYDS 96
Query: 378 SPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVH-LLRDILLTYSFYNFDLGY 436
E+ + T +R+ I D+ RT+ + F P V + IL ++ + GY
Sbjct: 97 RNEEHHQDT-YRQ----IHIDIPRTNPLIPLFQ---QPLVQEIFERILFIWAIRHPASGY 148
Query: 437 CQGMSDLLSPIL------FVMED-----------------ESQSFWCFVALMERLGPNFN 473
QG++DL++P +V ED E+ SFWC L++ + N+
Sbjct: 149 VQGINDLVTPFFVVFLSEYVEEDVENFDVTNLSQDMLRSIEADSFWCMSKLLDGIQDNYT 208
Query: 474 RDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLW 533
Q G+ ++ AL +LV +D +HN+F++ + F FRW+ RE T+RLW
Sbjct: 209 FAQPGIQKKVKALEELVSRIDEQVHNHFRRYEVEYLQFAFRWMNNLLMRELPLRCTIRLW 268
Query: 534 EVLWTHYLSE-----HLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINEL 578
+ Y SE H HLYVC A L ++R +I+ E+ DF LL + L
Sbjct: 269 DT----YQSEPEGFSHFHLYVCAAFLIKWRKEILDEE-DFQGLLMLLQNL 313
>pdb|2QFZ|A Chain A, Crystal Structure Of Human Tbc1 Domain Family Member 22a
pdb|2QFZ|B Chain B, Crystal Structure Of Human Tbc1 Domain Family Member 22a
Length = 345
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 82/312 (26%), Positives = 131/312 (41%), Gaps = 52/312 (16%)
Query: 302 GSEEWTTFLDN-----EGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAER 356
GSE + LD G D LR R+ + G+ +R W L GY +
Sbjct: 18 GSEREASRLDKFKQLLAGPNTDLEELR-RLSWSGIPKPVRPMTWKLLSGYLPANVDRRPA 76
Query: 357 EYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPN 416
R K+ EY + ++ + T +R+ I D+ R P
Sbjct: 77 TLQR--KQKEYFAFIEHYYDSRNDEVHQDT-YRQ----IHIDIPRMSPEALIL----QPK 125
Query: 417 V-HLLRDILLTYSFYNFDLGYCQGMSDLLSP--ILFVME--------------------- 452
V + IL ++ + GY QG++DL++P ++F+ E
Sbjct: 126 VTEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFICEYIEAEEVDTVDVSGVPAEVLC 185
Query: 453 -DESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFF 511
E+ ++WC L++ + N+ Q G+ ++ L +LV +D +H + Q++ F
Sbjct: 186 NIEADTYWCMSKLLDGIQDNYTFAQPGIQMKVKMLEELVSRIDEQVHRHLDQHEVRYLQF 245
Query: 512 CFRWVLIQFKREFEYEKTMRLWEVLWTHYLSE-----HLHLYVCVAILKRYRNKIMGEQM 566
FRW+ RE T+RLW+ Y SE H HLYVC A L R+R +I+ E+
Sbjct: 246 AFRWMNNLLMREVPLRCTIRLWDT----YQSEPDGFSHFHLYVCAAFLVRWRKEIL-EEK 300
Query: 567 DFDTLLKFINEL 578
DF LL F+ L
Sbjct: 301 DFQELLLFLQNL 312
>pdb|2G77|A Chain A, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 410
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 115/249 (46%), Gaps = 44/249 (17%)
Query: 324 KRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQAR 383
++I + G+ R VW L+GY ++ E R K+ EY + + + S + +R
Sbjct: 47 RQISWNGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQR--KRKEYRDSLKH--TFSDQHSR 102
Query: 384 RFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDL 443
+ + I+ D+ RT+ + + N L+ IL ++ + GY QG++DL
Sbjct: 103 DIPTWHQ----IEIDIPRTNPHIPLYQFKSVQNS--LQRILYLWAIRHPASGYVQGINDL 156
Query: 444 LSPIL--FVMED--------------------------ESQSFWCFVALMERLGPNFNRD 475
++P F+ E E+ +FWC L+E++ N+
Sbjct: 157 VTPFFETFLTEYLPPSQIDDVKIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNYIHG 216
Query: 476 QNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYF-FCFRWVLIQFKREFEYEKTMRLWE 534
Q G+ Q+ LS+LV+ +D L+N+F QN+ + + F FRW+ REF+ +R+W+
Sbjct: 217 QPGILRQVKNLSQLVKRIDADLYNHF-QNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWD 275
Query: 535 VLWTHYLSE 543
YLSE
Sbjct: 276 T----YLSE 280
>pdb|1FKM|A Chain A, Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p
Length = 396
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 117/257 (45%), Gaps = 45/257 (17%)
Query: 316 VMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQ 375
+++ LR+ I + G+ R VW L+GY ++ E R K+ EY + +
Sbjct: 20 IINQQDLRQ-ISWNGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQR--KRKEYRDSLKH-- 74
Query: 376 SISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLG 435
+ S + +R + + I+ D+ RT+ + + N L+ IL ++ + G
Sbjct: 75 TFSDQHSRDIPTWHQ----IEIDIPRTNPHIPLYQFKSVQNS--LQRILYLWAIRHPASG 128
Query: 436 YCQGMSDLLSPIL--FVMED--------------------------ESQSFWCFVALMER 467
Y QG++DL++P F+ E E+ +FWC L+E+
Sbjct: 129 YVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYXVDEQITDLEADTFWCLTKLLEQ 188
Query: 468 LGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYF-FCFRWVLIQFKREFEY 526
+ N+ Q G+ Q+ LS+LV+ +D L+N+F QN+ + + F FRW REF+
Sbjct: 189 ITDNYIHGQPGILRQVKNLSQLVKRIDADLYNHF-QNEHVEFIQFAFRWXNCLLXREFQX 247
Query: 527 EKTMRLWEVLWTHYLSE 543
+R W+ YLSE
Sbjct: 248 GTVIRXWDT----YLSE 260
>pdb|3HZJ|A Chain A, Crystal Structure Of The Rabgap Domain Of The Rabgap1l
Protein
pdb|3HZJ|B Chain B, Crystal Structure Of The Rabgap Domain Of The Rabgap1l
Protein
pdb|3HZJ|C Chain C, Crystal Structure Of The Rabgap Domain Of The Rabgap1l
Protein
Length = 310
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 101/247 (40%), Gaps = 32/247 (12%)
Query: 330 GVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFR 389
GV LR EVW L G +D+ Y I TK
Sbjct: 33 GVPEALRAEVWQLLAG--CHDNQAXLDRYRILI-----------------------TKDS 67
Query: 390 ERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILF 449
++ +I +D+ RT + +F L I YS Y+ D+GYCQG S L+ +L
Sbjct: 68 AQESVITRDIHRTFPAHDYFKDTGGDGQESLYKICKAYSVYDEDIGYCQGQS-FLAAVLL 126
Query: 450 VMEDESQSFWCFVALMERLGPN--FNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCL 507
+ E Q+F V + G + + +H + + L +L + LH++F +
Sbjct: 127 LHXPEEQAFCVLVKIXYDYGLRDLYRNNFEDLHCKFYQLERLXQEQLPDLHSHFSDLNLE 186
Query: 508 NYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMD 567
+ + +W L F +F + ++L L+ H V +A+LK + ++ Q D
Sbjct: 187 AHXYASQWFLTLFTAKFPLCXVFHIIDLLLCEGLNIIFH--VALALLKTSKEDLL--QAD 242
Query: 568 FDTLLKF 574
F+ LKF
Sbjct: 243 FEGALKF 249
>pdb|2QQ8|A Chain A, Crystal Structure Of The Putative Rabgap Domain Of Human
Tbc1 Domain Family Member 14
Length = 334
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 61/265 (23%), Positives = 115/265 (43%), Gaps = 24/265 (9%)
Query: 324 KRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISP---- 379
+ +++ G+ +R +VW+ +G + + C+ ++ K +W+S+S
Sbjct: 42 RDLWWQGIPPSVRGKVWSLAIGN---ELNITHELFDICLARA-----KERWRSLSTGGSE 93
Query: 380 ---EQARRFTKFRERK-GLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLG 435
E A RE LI D+ RT ++ F P +L IL Y+ Y D+G
Sbjct: 94 VENEDAGFSAADREASLELIKLDISRTFPNLCIFQ-QGGPYHDMLHSILGAYTCYRPDVG 152
Query: 436 YCQGMSDLLSPILFVMEDESQSFWCFVALMER-LGPNFNRDQNGMHSQLFALSKLVELLD 494
Y QGMS ++ +L + D + +F F L+ + F R +G+ FA ++ +
Sbjct: 153 YVQGMS-FIAAVLILNLDTADAFIAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEEN 211
Query: 495 NP-LHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAI 553
P L +FK+N+ + W+ + + + R+W+V E + I
Sbjct: 212 LPKLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRD--GEEFLFRTALGI 269
Query: 554 LKRYRNKIMGEQMDFDTLLKFINEL 578
LK + + + +MDF + +F+ L
Sbjct: 270 LKLFEDIL--TKMDFIHMAQFLTRL 292
>pdb|3QYB|A Chain A, X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rabgap
Domain
Length = 301
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 85/181 (46%), Gaps = 6/181 (3%)
Query: 398 DVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQS 457
D+ RT + +F P L ++L YS + ++GYCQG+S ++ +L + E Q+
Sbjct: 100 DLGRTFPTHPYFSVQLGPGQLSLFNLLKAYSLLDKEVGYCQGIS-FVAGVLLLHMSEEQA 158
Query: 458 FWCFVALMERLG--PNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRW 515
F LM LG + D + Q++ LS+L+ L+N+ ++N+ + W
Sbjct: 159 FEMLKFLMYDLGFRKQYRPDMMSLQIQMYQLSRLLHDYHRDLYNHLEENEISPSLYAAPW 218
Query: 516 VLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFI 575
L F +F R++++++ + V +++L IM E F+ +++F+
Sbjct: 219 FLTLFASQFSLGFVARVFDIIFLQ--GTEVIFKVALSLLSSQETLIM-ECESFENIVEFL 275
Query: 576 N 576
Sbjct: 276 K 276
>pdb|3QYE|A Chain A, Crystal Structure Of Human Tbc1d1 Rabgap Domain
pdb|3QYE|B Chain B, Crystal Structure Of Human Tbc1d1 Rabgap Domain
Length = 331
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/276 (20%), Positives = 116/276 (42%), Gaps = 27/276 (9%)
Query: 306 WTTFLDNEGRV---MDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCI 362
W L GR D + + G H R E+W FL + + ++ + +
Sbjct: 33 WEKMLSTPGRSKIKFDMEKMHSAVGQGVPRHH-RGEIWKFLAEQFHLKHQFPSKQQPKDV 91
Query: 363 KKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRD 422
Y+ + +Q S ++ I D+ RT + +F L +
Sbjct: 92 P---YKELLKQLTS--------------QQHAILIDLGRTFPTHPYFSAQLGAGQLSLYN 134
Query: 423 ILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLG--PNFNRDQNGMH 480
IL YS + ++GYCQG+S ++ IL + E ++F LM +G + D +
Sbjct: 135 ILKAYSLLDQEVGYCQGLS-FVAGILLLHMSEEEAFKMLKFLMFDMGLRKQYRPDMIILQ 193
Query: 481 SQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHY 540
Q++ LS+L+ L+N+ ++++ + W L F +F R++++++
Sbjct: 194 IQMYQLSRLLHDYHRDLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQ- 252
Query: 541 LSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFIN 576
+ V +++L ++ I+ + + +T++ FI
Sbjct: 253 -GTEVIFKVALSLLGSHKPLILQHE-NLETIVDFIK 286
>pdb|1GPD|G Chain G, Studies Of Asymmetry In The Three-Dimensional Structure Of
Lobster D- Glyceraldehyde-3-Phosphate Dehydrogenase
pdb|1GPD|R Chain R, Studies Of Asymmetry In The Three-Dimensional Structure Of
Lobster D- Glyceraldehyde-3-Phosphate Dehydrogenase
Length = 334
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 359 LRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVH 418
+R K+ Y++IK ++ S + F + E ++ D + +RS F D +
Sbjct: 244 VRLGKECSYDDIKAAMKTASEGPLQGFLGYTEDD-VVSSDFIGDNRSSIF---DAKAGIQ 299
Query: 419 LLRDILLTYSFYNFDLGYCQGMSDLL 444
L + + S+Y+ + GY Q + DLL
Sbjct: 300 LSKTFVKVVSWYDNEFGYSQRVIDLL 325
>pdb|4GPD|1 Chain 1, The Structure Of Lobster Apo-D-Glyceraldehyde-3-Phosphate
Dehydrogenase At 3.0 Angstroms Resolution
pdb|4GPD|2 Chain 2, The Structure Of Lobster Apo-D-Glyceraldehyde-3-Phosphate
Dehydrogenase At 3.0 Angstroms Resolution
pdb|4GPD|3 Chain 3, The Structure Of Lobster Apo-D-Glyceraldehyde-3-Phosphate
Dehydrogenase At 3.0 Angstroms Resolution
pdb|4GPD|4 Chain 4, The Structure Of Lobster Apo-D-Glyceraldehyde-3-Phosphate
Dehydrogenase At 3.0 Angstroms Resolution
Length = 333
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 359 LRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVH 418
+R K+ Y++IK ++ S + F + E ++ D + +RS F D +
Sbjct: 243 VRLGKECSYDDIKAAMKTASEGPLQGFLGYTEDD-VVSSDFIGDNRSSIF---DAKAGIQ 298
Query: 419 LLRDILLTYSFYNFDLGYCQGMSDLL 444
L + + S+Y+ + GY Q + DLL
Sbjct: 299 LSKTFVKVVSWYDNEFGYSQRVIDLL 324
>pdb|2GV9|A Chain A, Crystal Structure Of The Herpes Simplex Virus Type 1 Dna
Polymerase
pdb|2GV9|B Chain B, Crystal Structure Of The Herpes Simplex Virus Type 1 Dna
Polymerase
Length = 1193
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 10/83 (12%)
Query: 432 FDLGYCQ---------GMSDLLSPILFVMEDESQSFWCFVALMERLGPNFNRDQNGMHSQ 482
F LG C L +P++ + E + F+ L+++ GP F N ++
Sbjct: 370 FSLGSCDLPESHLNELAARGLPTPVVLEFDSEFEMLLAFMTLVKQYGPEFVTGYNIINFD 429
Query: 483 L-FALSKLVELLDNPLHNYFKQN 504
F L+KL ++ PL Y + N
Sbjct: 430 WPFLLAKLTDIYKVPLDGYGRMN 452
>pdb|4HLQ|A Chain A, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|C Chain C, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|E Chain E, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|G Chain G, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|I Chain I, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 305
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 62/279 (22%), Positives = 115/279 (41%), Gaps = 50/279 (17%)
Query: 318 DSNALRKR-IFYGGV-DHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYE---NIKR 372
D ALR+ I GG+ ++RR+VW LL A D + LR + K + +++R
Sbjct: 46 DVAALRRMAISEGGLLTDEIRRKVWPKLLNVNANDPPPISGKNLRQMSKDYQQVLLDVRR 105
Query: 373 QWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNF 432
+ P +R+GL ++ + + NP +H
Sbjct: 106 SLRRFPPGMPE-----EQREGLQEELIDIILLILE-----RNPQLH-------------- 141
Query: 433 DLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNFNRD--QNGMHSQLFALSKLV 490
Y QG D++ L V+ + + +L+E+L + RD M + L+ L+
Sbjct: 142 ---YYQGYHDIVVTFLLVVGERLAT-----SLVEKLSTHHLRDFMDPTMDNTKHILNYLM 193
Query: 491 ELLD--NPLHNYFKQNDCLNYFFCFRWVLIQFKREF-EYEKTMRLWEVLWTHYLSEH-LH 546
++D NP + F Q+ + F W++ F ++ +RL++ +L+ H L
Sbjct: 194 PIIDQVNPELHDFMQSAEVGTIFALSWLITWFGHVLSDFRHVVRLYDF----FLACHPLM 249
Query: 547 LYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLD 585
A++ YR + E +D D + ++ L +I D
Sbjct: 250 PIYFAAVIVLYREQ---EVLDCDCDMASVHHLLSQIPQD 285
>pdb|4HL4|A Chain A, Crystal Structure Of The Human Tbc1d20 Rabgap Domain
Length = 292
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 60/279 (21%), Positives = 113/279 (40%), Gaps = 50/279 (17%)
Query: 318 DSNALRKRIFYGG--VDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYE---NIKR 372
D ALR+ G + ++RR+VW LL A D + LR + K + +++R
Sbjct: 33 DVAALRRMAISEGGLLTDEIRRKVWPKLLNVNANDPPPISGKNLRQMSKDYQQVLLDVRR 92
Query: 373 QWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNF 432
+ P +R+GL ++ + + NP +H
Sbjct: 93 SLRRFPPGMPE-----EQREGLQEELIDIILLILE-----RNPQLH-------------- 128
Query: 433 DLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNFNRD--QNGMHSQLFALSKLV 490
Y QG D++ L V+ + + +L+E+L + RD M + L+ L+
Sbjct: 129 ---YYQGYHDIVVTFLLVVGERLAT-----SLVEKLSTHHLRDFMDPTMDNTKHILNYLM 180
Query: 491 ELLD--NPLHNYFKQNDCLNYFFCFRWVLIQFKREF-EYEKTMRLWEVLWTHYLSEH-LH 546
++D NP + F Q+ + F W++ F ++ +RL++ +L+ H L
Sbjct: 181 PIIDQVNPELHDFMQSAEVGTIFALSWLITWFGHVLSDFRHVVRLYDF----FLACHPLM 236
Query: 547 LYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLD 585
A++ YR + E +D D + ++ L +I D
Sbjct: 237 PIYFAAVIVLYREQ---EVLDCDCDMASVHHLLSQIPQD 272
>pdb|1QQC|A Chain A, Crystal Structure Of An Archaebacterial Dna Polymerase
D.Tok
Length = 773
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 422 DILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNFNRDQNG-MH 480
D+L+TY+ NFD Y + S++L + D S+ ++R+G F + G +H
Sbjct: 204 DVLITYNGDNFDFAYLKKRSEMLGVKFILGRDGSEP------KIQRMGDRFAVEVKGRIH 257
Query: 481 SQLFAL 486
L+ +
Sbjct: 258 FDLYPV 263
>pdb|1D5A|A Chain A, Crystal Structure Of An Archaebacterial Dna Polymerase
D.Tok. Deposition Of Second Native Structure At 2.4
Angstrom
Length = 733
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 422 DILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNFNRDQNG-MH 480
D+L+TY+ NFD Y + S++L + D S+ ++R+G F + G +H
Sbjct: 204 DVLITYNGDNFDFAYLKKRSEMLGVKFILGRDGSEP------KIQRMGDRFAVEVKGRIH 257
Query: 481 SQLFAL 486
L+ +
Sbjct: 258 FDLYPV 263
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,783,230
Number of Sequences: 62578
Number of extensions: 785540
Number of successful extensions: 1754
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1734
Number of HSP's gapped (non-prelim): 17
length of query: 630
length of database: 14,973,337
effective HSP length: 105
effective length of query: 525
effective length of database: 8,402,647
effective search space: 4411389675
effective search space used: 4411389675
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)