Query 006827
Match_columns 630
No_of_seqs 305 out of 1701
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 15:03:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006827.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006827hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1648 Uncharacterized conser 100.0 3.6E-57 7.8E-62 470.0 5.8 515 39-598 248-805 (813)
2 KOG2224 Uncharacterized conser 100.0 6.2E-52 1.3E-56 425.2 28.0 302 299-602 403-736 (781)
3 KOG2197 Ypt/Rab-specific GTPas 100.0 1.3E-43 2.9E-48 389.0 13.2 308 295-603 142-449 (488)
4 KOG4567 GTPase-activating prot 100.0 3.4E-42 7.3E-47 343.7 21.1 289 305-599 11-364 (370)
5 KOG2058 Ypt/Rab GTPase activat 100.0 1.1E-40 2.4E-45 355.5 20.5 252 303-579 123-383 (436)
6 KOG1092 Ypt/Rab-specific GTPas 100.0 1.4E-39 2.9E-44 336.2 18.4 277 315-602 174-480 (484)
7 smart00164 TBC Domain in Tre-2 100.0 1.9E-38 4.2E-43 312.8 16.6 196 327-541 1-198 (199)
8 KOG2223 Uncharacterized conser 100.0 7.1E-38 1.5E-42 322.9 19.1 281 309-604 281-564 (586)
9 COG5210 GTPase-activating prot 100.0 1.7E-35 3.6E-40 330.4 22.0 247 299-565 179-430 (496)
10 PF00566 RabGAP-TBC: Rab-GTPas 100.0 8.8E-34 1.9E-38 281.6 17.1 212 333-562 1-214 (214)
11 PF12068 DUF3548: Domain of un 100.0 1.3E-33 2.9E-38 276.9 9.8 123 42-164 3-174 (213)
12 KOG2222 Uncharacterized conser 100.0 2E-29 4.4E-34 262.1 17.6 262 305-592 148-415 (848)
13 KOG1093 Predicted protein kina 100.0 1.1E-28 2.3E-33 263.0 17.1 254 313-600 339-595 (725)
14 KOG4347 GTPase-activating prot 99.9 1.7E-26 3.7E-31 250.7 15.9 265 304-596 174-458 (671)
15 KOG4436 Predicted GTPase activ 99.9 3E-26 6.5E-31 251.8 14.8 257 303-582 549-810 (948)
16 KOG1091 Ypt/Rab-specific GTPas 99.9 6.3E-25 1.4E-29 234.6 19.2 262 334-602 28-369 (625)
17 KOG2595 Predicted GTPase activ 99.9 6E-23 1.3E-27 208.1 13.9 256 317-603 46-308 (395)
18 KOG1102 Rab6 GTPase activator 99.9 1.1E-22 2.5E-27 219.9 13.7 233 318-578 134-367 (397)
19 KOG2221 PDZ-domain interacting 99.8 3.3E-20 7.1E-25 177.9 6.4 190 303-516 75-267 (267)
20 KOG3636 Uncharacterized conser 99.6 1.1E-14 2.5E-19 152.1 14.8 202 394-600 69-276 (669)
21 KOG4436 Predicted GTPase activ 99.5 8.6E-14 1.9E-18 154.4 11.8 246 304-577 164-419 (948)
22 KOG2801 Probable Rab-GAPs [Int 98.9 2.1E-08 4.6E-13 100.7 14.8 253 318-596 31-294 (559)
23 KOG2197 Ypt/Rab-specific GTPas 97.6 4.5E-05 9.7E-10 85.1 4.6 84 295-378 42-125 (488)
24 PF14961 BROMI: Broad-minded p 96.6 0.019 4E-07 68.8 12.3 156 420-579 1086-1260(1296)
25 KOG2224 Uncharacterized conser 93.8 0.022 4.7E-07 60.8 0.6 34 434-467 566-599 (781)
26 PF08567 TFIIH_BTF_p62_N: TFII 58.1 52 0.0011 27.6 7.2 65 64-142 12-78 (79)
27 KOG1102 Rab6 GTPase activator 50.4 4.6 9.9E-05 44.4 -0.5 115 394-540 2-116 (397)
28 PF14472 DUF4429: Domain of un 46.5 18 0.00038 31.4 2.7 31 104-134 27-58 (94)
29 cd01047 ACSF Aerobic Cyclase S 27.4 98 0.0021 32.6 4.9 61 496-556 161-225 (323)
30 PF07024 ImpE: ImpE protein; 27.2 45 0.00097 30.5 2.1 35 106-140 30-72 (123)
31 PF08109 Antimicrobial14: Lact 26.4 39 0.00085 22.1 1.1 16 434-449 3-18 (31)
32 PF14844 PH_BEACH: PH domain a 25.2 54 0.0012 28.6 2.3 93 45-146 2-97 (106)
33 PF13142 DUF3960: Domain of un 24.9 51 0.0011 27.5 1.8 29 43-72 58-86 (87)
34 TIGR02029 AcsF magnesium-proto 24.1 1.2E+02 0.0027 32.0 4.9 61 496-556 171-235 (337)
35 CHL00185 ycf59 magnesium-proto 22.4 1.4E+02 0.0029 31.9 4.8 60 496-555 177-240 (351)
36 PLN02508 magnesium-protoporphy 21.8 1.4E+02 0.0031 31.8 4.8 60 496-555 177-240 (357)
37 PRK13654 magnesium-protoporphy 20.4 1.1E+02 0.0025 32.6 3.8 60 496-555 181-244 (355)
No 1
>KOG1648 consensus Uncharacterized conserved protein, contains RUN, BRK and TBC domains [General function prediction only]
Probab=100.00 E-value=3.6e-57 Score=469.99 Aligned_cols=515 Identities=23% Similarity=0.373 Sum_probs=402.9
Q ss_pred CCCCcEEEEeeCCeEEccCccccCCCCccEEEEeeCCceEEEeEecCCCCCCccccccccCcceeee--eeCCceeEEEe
Q 006827 39 ESEGAELVYLKDNVTIHPTQFASERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRA--VPFTEVRSIRR 116 (630)
Q Consensus 39 ~~~~~~Llf~Ks~V~vhPt~~~~d~I~G~L~l~~~~~~~~l~W~P~~~~~~~~~~~~~~~~~y~~~~--v~ls~i~si~~ 116 (630)
+.++++|||+||+|+||| +++++.+||||||+|.++.++|+|+||++|+++.+.++.++++||+++ |++.||++|||
T Consensus 248 qnsr~~llygkN~vlvqP-k~dmeavpgYlSLhq~ad~ltLKWtPNQLMngs~gds~~EksvyWdya~~i~~~~ivyiHc 326 (813)
T KOG1648|consen 248 QNSRTRLLYGKNHVLVQP-KSDMEAVPGYLSLHQFADGLTLKWTPNQLMNGSSGDSSGEKSVYWDYAINIEMQDIVYIHC 326 (813)
T ss_pred hcchhhhhcccccccccC-chhhhcccceeeHhhhhccceeecChHHhhcCCCCCccccceeeecceeeeehhheEEEEe
Confidence 337889999999999999 668999999999999999999999999999999999999999999987 99999999999
Q ss_pred cCCC-CCceEEEEEeCCCCCCCCeeecCCChH-HHHHHHHhhccccc---ccccCCCCCCCc---ccCCCCCcccccccC
Q 006827 117 HTPA-FGWQYIIVVLSSGLAFPPLYFYTGGVR-EFLATIKQHVLLVR---AVSIASGSSTPV---SIGDSPTNVNLERTN 188 (630)
Q Consensus 117 ~~p~-~G~~~~vl~~~dG~~~PpL~Fh~GG~~-~fl~~L~~~~~l~r---~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 188 (630)
|+.. +|.+ ++||++||++.|||+|+.||+. +||+||+ +++|++ .+|+|.++++++ +++..++ +.+ .
T Consensus 327 HQq~eSggt-lvlVsqdGiQrpPf~fP~GgHll~FLScLE-nGLlP~gqLdPPLW~q~gKgKvfPkLRKRS~---~~s-~ 400 (813)
T KOG1648|consen 327 HQQDESGGT-LVLVSQDGIQRPPFQFPAGGHLLAFLSCLE-NGLLPLGQLDPPLWVQTGKGKVFPKLRKRST---AVS-N 400 (813)
T ss_pred ecccCCCCe-EEEEecccccCCCccCCCCchhHHHHHHHH-hcCCcccccCCccccccCCcccchhhhhcCc---ccC-C
Confidence 9995 6755 9999999999999999999998 9999999 699999 799999998885 2222221 111 1
Q ss_pred CCCCCCCCccccccccc---cccCCChhhhhhHHhhccchhhhhhhhhhhhhhhhccCC---CCCcc-------------
Q 006827 189 GGLGHDSHSISQFHGRQ---KQKAQDPARDISIQVLEKFSLVTKFARETTSQLFRENHS---NGFGA------------- 249 (630)
Q Consensus 189 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~s~~t~~~~~~~~~~~~~~~~---~~~~~------------- 249 (630)
+....+..+..+|+||. ++.......++. -.+-+-+..||.....-++|.+|+.+ ++.++
T Consensus 401 ~~~~~~~~~atDYVFRiiypg~~~E~~p~D~~-d~~~~~~~p~wh~~P~~ssc~scS~s~Sp~~~~s~~sc~~~r~pl~l 479 (813)
T KOG1648|consen 401 PAMEMGTGRATDYVFRIIYPGSGVEPAPEDIE-DPLFGPSAPTWHSPPIHSSCNSCSLSNSPYIVDSVDSCVNFRLPLGL 479 (813)
T ss_pred chhhcCcccccceEEEEeecCCCCCCCchhhh-ccccCCCCcccCCCCcccccccccCCCCCCccccccccccccchHHH
Confidence 11112345667888873 332222222322 12223356778877777777666552 22211
Q ss_pred ----chhh---hcchhhccccccCCccccccc---ccCCCCCC-cccccccccccCCCCCCCCCHHHHHhchhccCCCCC
Q 006827 250 ----FEKK---FDSQSALDFDHKASYDTETIV---NEIPVAPD-PVEFDKLTLVWGKPRQPPLGSEEWTTFLDNEGRVMD 318 (630)
Q Consensus 250 ----~~~~---~~~~~~~~~~~~~~~~~e~~~---~~~~~~~~-~~~~~~~~~~~~~~r~~pl~~~~W~~~l~~~g~~~~ 318 (630)
|++| +++|+|++||+|+++|++++. ++..+++| |++ ...++|+..|+.+..+. .+.
T Consensus 480 lC~sMk~QI~sRAFYGWLaycRHLsTvRTHLsaLV~h~~~~pD~pcd-----------a~~glt~~~W~qy~~d~--t~~ 546 (813)
T KOG1648|consen 480 LCQSMKNQIMSRAFYGWLAYCRHLSTVRTHLSALVDHKTLIPDDPCD-----------ASAGLTEKFWKQYRADP--TIE 546 (813)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCC-----------ccccccHHHHHHHhcCC--chH
Confidence 5555 579999999999999999875 66666655 544 45789999999997552 344
Q ss_pred hHHHHHHHHhCCCChhhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHhhhcCChHHHhhhhhhhhcccccccc
Q 006827 319 SNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKD 398 (630)
Q Consensus 319 ~~~Lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~lk~~~~~~~~~q~~~~~~~~e~~~~IekD 398 (630)
.-++.+...+||.....|+.+|+++++.+..++...+.+.........|.+....|.. -..++|+||
T Consensus 547 e~~~l~~~~~g~~e~~~r~~~~p~~~~~~~~g~~~~~~d~~e~~~s~~y~~~l~~~~~-------------~~~~~~~kd 613 (813)
T KOG1648|consen 547 EWRVLEAEVRGRDEEAFRAARAPKAASPVREGSCDVFEDPNEPTCSQHYDRNLITLFR-------------ANLHRIDKD 613 (813)
T ss_pred HHHHHHHHHhcccHHHHhhcccccccccccccccchhcCCCccHHHHHHHHHHHHHHh-------------hheeeecch
Confidence 4455566789999999999999999999998888777777777778889887766543 446899999
Q ss_pred ccccCCCCccccCCCChhHHHHHHHHHHhhhccCCCccccCcchhHHHHHHhccchhhHHHHHHHHHHhhCCCCCCCcch
Q 006827 399 VVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNFNRDQNG 478 (630)
Q Consensus 399 V~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~npdiGYvQGM~dL~apLL~v~~dE~~AFw~f~~lm~~~~~~F~~d~~g 478 (630)
+.|++++..+|++.++ ++. ++++.+|...|.+-||.|||+|+.+|++.-++||..+--||.-+|-+-+..|.. ..|
T Consensus 614 ~e~~~~~~~~fs~~~~--les-~~~~~~~~~~~l~~~~~~~~~dl~~p~~~~~ed~~~~~e~~s~~~~~q~~~~~q-~~~ 689 (813)
T KOG1648|consen 614 VERCDRNLMFFSNKDN--LES-RRVMYTYVRRNLEEGYTQGMCDLLAPLLVTFEDEALTLECFSLLMLRQRGKFPQ-RPG 689 (813)
T ss_pred hhhCcchheeecCCcc--hhh-heeeeeeeccccccccccchhhccCCcCCChhhcccccCCCcHHHHHhcccCCC-CCC
Confidence 9999999999998764 566 899999999999999999999999999999999988888998888887777765 678
Q ss_pred hhhhHHHHHHHHHhhChhhhhHHhhcCCCcchhHHHHHHHhcCcCCcHHHHHHHHHHHHhhcc---chhHHHHHHHHHHH
Q 006827 479 MHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYL---SEHLHLYVCVAILK 555 (630)
Q Consensus 479 m~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfltlF~ref~~~~vlrLWD~~~~~~~---~~~f~l~valAIL~ 555 (630)
|...+..++ +++..+|-... + +... -.-|+||+.-|+++++.+.....|+++|.... ...|-+|+++|. .
T Consensus 690 ~~~~l~~~r-~~~v~~~l~s~-i---d~~q-a~~f~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~-~ 762 (813)
T KOG1648|consen 690 MSKCLLNLR-LIQVVDPLISD-I---DYAQ-ALSFRWFLLDFKRELSYECTYKVWEVIWAAQRLRITDDFAIFFGLAT-T 762 (813)
T ss_pred ccccccccc-chhhhcchhcc-h---hhhh-hcceeeeccCcccccCCCCcceeeEeeccccccccCcchhhhhhhHH-H
Confidence 887777776 88888883321 1 1111 23489999999999999999999999997432 346889999999 5
Q ss_pred HHHHHHhcCCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhh
Q 006827 556 RYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICA 598 (630)
Q Consensus 556 ~~r~~Il~~~~d~deIlk~ln~l~~~id~~~iL~~A~~L~~~~ 598 (630)
.+.+.++.++.+..++++|+|++....|-+.++.-|.--..++
T Consensus 763 ~~~~~~~t~~~~~t~~i~~~~~~~e~~~c~r~~~~~~~~~~~l 805 (813)
T KOG1648|consen 763 NYHDVLITNNFDYTDMIKFFNEMAERHDCSRLLSSARTHVKCL 805 (813)
T ss_pred hhHHHHhhcccchHHHHHHHHHHHhhhhhHHHHhcCcchHHHH
Confidence 6667777777789999999999988888777776665444433
No 2
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=6.2e-52 Score=425.22 Aligned_cols=302 Identities=38% Similarity=0.770 Sum_probs=269.5
Q ss_pred CCCCHHHHHh-chhccCCCCChHHHHHHHHhCCCChhhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHhhh-c
Q 006827 299 PPLGSEEWTT-FLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQ-S 376 (630)
Q Consensus 299 ~pl~~~~W~~-~l~~~g~~~~~~~Lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~lk~~~~-~ 376 (630)
+.++..-|-. .+++.|++-+.-+||+.+|.|||..++|++||+|||.+|...+|.++|..+...++++|+.+..+-. +
T Consensus 403 kki~~n~~~~t~lne~gqiedd~~lrk~iffggid~sir~evwpfllk~ys~est~edr~al~~~krkey~eiqqkrlys 482 (781)
T KOG2224|consen 403 KKIGTNAFLGTHLNEKGQIEDDLKLRKAIFFGGIDKSIRGEVWPFLLKCYSFESTFEDRAALMDIKRKEYEEIQQKRLYS 482 (781)
T ss_pred hhhhHHHHHHhhhhhcccchhHHHhhhhheeccchhhhhcchhHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455566766 7788899888889999999999999999999999999999999999999999999999998876543 6
Q ss_pred CChHHHhhhhhhhhccccccccccccCCCCccccCCCChhHHHHHHHHHHhhhccCCCccccCcchhHHHHHHhccchhh
Q 006827 377 ISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQ 456 (630)
Q Consensus 377 ~~~~q~~~~~~~~e~~~~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~npdiGYvQGM~dL~apLL~v~~dE~~ 456 (630)
+++++. ...|+...-.++|||.||+|+++||.+++||+.+.|+|||..|+.|||.+||.|||+|++||.|.-.+||.+
T Consensus 483 mspeeh--~~fwknvq~tvdkdvvrtdrnn~ff~gddnpn~e~mk~illn~avyn~~m~ysqgmsdllapvlcevqnese 560 (781)
T KOG2224|consen 483 MSPEEH--IAFWKNVQFTVDKDVVRTDRNNPFFCGDDNPNTESMKNILLNFAVYNPAMGYSQGMSDLLAPVLCEVQNESE 560 (781)
T ss_pred CCHHHH--HHHHhheEEEEecceeeccCCCCcccCCCCCcHHHHHHHHHhheeecccccccccchhhcchhhhhhccccc
Confidence 666653 335777777899999999999999999999999999999999999999999999999999999998889999
Q ss_pred HHHHHHHHHHhhCC------------------------C--C--CCCcchhhhhHHHHHHHHHhhChhhhhHHhhcC--C
Q 006827 457 SFWCFVALMERLGP------------------------N--F--NRDQNGMHSQLFALSKLVELLDNPLHNYFKQND--C 506 (630)
Q Consensus 457 AFw~f~~lm~~~~~------------------------~--F--~~d~~gm~~~l~~l~~LL~~~dP~L~~hL~~~~--i 506 (630)
+||||+++|+.|.. | | .+....|..++..+++|++.+.|.+|+||++.+ .
T Consensus 561 tfwcfvglmqgmsdlvapilaevldesdtfwcfvglmqna~fv~sp~d~dmd~~l~ylreliri~~~~fykhl~q~~ed~ 640 (781)
T KOG2224|consen 561 TFWCFVGLMQGMSDLVAPILAEVLDESDTFWCFVGLMQNAFFVCSPRDEDMDHNLLYLRELIRIMHPHFYKHLEQHGEDG 640 (781)
T ss_pred hhhhhhhhhccchhhhhhHHHhhhccccchhhhhhhhcceEEEeCCcchhhhHhHHHHHHHHHHhhHHHHHHHHHhCcch
Confidence 99999999985421 1 2 123467888999999999999999999999985 4
Q ss_pred CcchhHHHHHHHhcCcCCcHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCCHHH
Q 006827 507 LNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDA 586 (630)
Q Consensus 507 ~~~~f~~rWfltlF~ref~~~~vlrLWD~~~~~~~~~~f~l~valAIL~~~r~~Il~~~~d~deIlk~ln~l~~~id~~~ 586 (630)
..++||.||++.+|+|+||-..++|||+..|++|....|++|+|+||+..+.+.+++++...|+++-++.++++.||-+-
T Consensus 641 lellfchrwlllcfkref~ea~airiweacwa~y~tdyfhlficlaiiaiy~ddvi~q~l~~demllhf~nlam~mdgel 720 (781)
T KOG2224|consen 641 LELLFCHRWLLLCFKREFPEAEAIRIWEACWAHYLTDYFHLFICLAIIAIYADDVIAQNLAPDEMLLHFGNLAMHMDGEL 720 (781)
T ss_pred hhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHhhcCchhHHHhhhhhhhhcCchh
Confidence 45689999999999999999999999999999999999999999999999999999988899999999999999999999
Q ss_pred HHHHHHHHHHhhccCC
Q 006827 587 ILRDAEALCICAGENG 602 (630)
Q Consensus 587 iL~~A~~L~~~~~e~~ 602 (630)
||++|+.|..++.-..
T Consensus 721 ilrkar~ll~qfr~lp 736 (781)
T KOG2224|consen 721 ILRKARGLLHQFRLLP 736 (781)
T ss_pred hHHHHHHHHHHHhhcC
Confidence 9999999998887665
No 3
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-43 Score=389.02 Aligned_cols=308 Identities=49% Similarity=0.822 Sum_probs=285.5
Q ss_pred CCCCCCCCHHHHHhchhccCCCCChHHHHHHHHhCCCChhhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHhh
Q 006827 295 KPRQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQW 374 (630)
Q Consensus 295 ~~r~~pl~~~~W~~~l~~~g~~~~~~~Lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~lk~~~ 374 (630)
..+++.++.++|......+|+.......+.+++++|+-+.+|+++|++++++++|+.+..++...... ...|.+.+.+|
T Consensus 142 ~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k~qW 220 (488)
T KOG2197|consen 142 DNRSPSLTLEEYNSNAMREGRLDESVHQRERIFSGGLSKSLRAEVWKFLLDYSPWDSTTRERVSLRKL-TDEYFRLKLQW 220 (488)
T ss_pred cCCCCcchhhhhhhhhhhccccccchhhhheecccccccchhhhhhhhhhcccCcccccccccccccc-cccHhhhhhhh
Confidence 34555589999999998889886666566688999998899999999999999999999998888888 99999999999
Q ss_pred hcCChHHHhhhhhhhhccccccccccccCCCCccccCCCChhHHHHHHHHHHhhhccCCCccccCcchhHHHHHHhccch
Q 006827 375 QSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDE 454 (630)
Q Consensus 375 ~~~~~~q~~~~~~~~e~~~~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~npdiGYvQGM~dL~apLL~v~~dE 454 (630)
......+......+.+....|.+||.||++.+.+|.++++++...|.+||.+|++||+++||||||+|+++|++.++++|
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~i~~dv~rtDr~~~~~~~~~n~~~~~l~~iL~ty~~~~~d~GY~QgmSDllspi~~v~~de 300 (488)
T KOG2197|consen 221 SSTSPEQSPESEGYLERKSRIEKDVGRTDRSLEFYEGEENPHLARLVDILLTYAVYDFDLGYCQGMSDLLSPILIVMEDE 300 (488)
T ss_pred eeccccccccccchhhhhhhhhhhccccchhhhhhhcccccCHHHHHHHHhhcccccCccccccCchhhcCcceeeecCc
Confidence 99887776554446677789999999999999999998878899999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhCCCCCCCcchhhhhHHHHHHHHHhhChhhhhHHhhcCCCcchhHHHHHHHhcCcCCcHHHHHHHHH
Q 006827 455 SQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWE 534 (630)
Q Consensus 455 ~~AFw~f~~lm~~~~~~F~~d~~gm~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfltlF~ref~~~~vlrLWD 534 (630)
.+|||||+++|+++.+||..++.||+.++..+..+++..||.||+||++.+....+|||||++++|+|||.++++++||+
T Consensus 301 ~~aFwcFv~fm~~~~~nF~~d~~~~~~Ql~~~~~li~~~dp~l~~hLe~~d~~~~~f~fr~l~v~frrEf~~ed~l~LWE 380 (488)
T KOG2197|consen 301 VEAFWCFVGFMDRLRHNFRIDQSGMQTQLAQLSSLIQELDPRLYQHLEKLDAGDLFFCFRMLLVPFRREFEFEDSLRLWE 380 (488)
T ss_pred hHHHHHHHHHHHHHhhcCccccccHHHHhhhhhhhccccCHHHHhhccccCCCccceeeehhhcccccccccccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccchhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhccCCC
Q 006827 535 VLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICAGENGA 603 (630)
Q Consensus 535 ~~~~~~~~~~f~l~valAIL~~~r~~Il~~~~d~deIlk~ln~l~~~id~~~iL~~A~~L~~~~~e~~~ 603 (630)
++|+..++.+|+++++.|+|.+..+.|+.+..++++++++++.++.+.|+..++..|..+..+......
T Consensus 381 vlw~~~~~~~f~~~~~~~~l~~~~~~l~~~~~~~~e~l~~i~~~~~~~d~~~~~~~A~~~~~~~k~~~~ 449 (488)
T KOG2197|consen 381 VLWTDLPSPHFHLYVAPAILNKDPQTLMEQGKSFNEVLKHVNLLSEKADVLWVLVRAEALERQNKQMEE 449 (488)
T ss_pred HHHhcCccchHHHHHHHhhhhcchHHHHhcCccchhHHhhcccccccchhhhHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999999999999999999999876655544
No 4
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=100.00 E-value=3.4e-42 Score=343.70 Aligned_cols=289 Identities=28% Similarity=0.514 Sum_probs=242.3
Q ss_pred HHHhchhccCCCCChHHHHHHHHhCCCC--hhhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHhhhcCC----
Q 006827 305 EWTTFLDNEGRVMDSNALRKRIFYGGVD--HKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSIS---- 378 (630)
Q Consensus 305 ~W~~~l~~~g~~~~~~~Lk~~i~~~GIp--~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~lk~~~~~~~---- 378 (630)
.-+..+......++.+++|+ ++..|+| ..+|+.+|+.|||++|.+.+. |....++.+..|.++..+...-.
T Consensus 11 ~~edvl~~~~~~id~kelr~-~~~~g~p~~~~lR~~~WkllL~Yl~~er~~--w~s~La~~R~~Y~q~i~e~v~epg~~~ 87 (370)
T KOG4567|consen 11 SIEDVLNPADDTIDLKELRK-LCFYGVPDDASLRPLVWKLLLGYLPPERSK--WTSFLAKKRSLYKQFIEEIVDEPGKKD 87 (370)
T ss_pred hHHHhhccccchhhHHHHHH-HhhcCCCCccchhHhHHHHHHhhcChhhhh--hHHHHHHHHHHHHHHHHHhccCccccc
Confidence 33444444344488999999 5688999 689999999999999977554 46778888999999888754311
Q ss_pred ------hHH-----------Hh---hhhhhhhccccccccccccCCCCccccCCCC-h----------------------
Q 006827 379 ------PEQ-----------AR---RFTKFRERKGLIDKDVVRTDRSVTFFDGDDN-P---------------------- 415 (630)
Q Consensus 379 ------~~q-----------~~---~~~~~~e~~~~IekDV~RT~~~~~~f~~~~~-~---------------------- 415 (630)
..+ .. .+-...|...||++||+||.|...+|+.... +
T Consensus 88 ~~~~v~~~D~~~dhPls~~~~sdwn~ff~d~e~l~QIdrDvrr~~pdi~ff~~~~~~p~~~~~~~~~~i~~~q~~~~n~~ 167 (370)
T KOG4567|consen 88 NSKKVDSNDTDEDHPLSLGPTSDWNTFFKDCEVLLQIDRDVRRTHPDISFFQLASSYPCRQGMDSRRRINASQEAGRNRL 167 (370)
T ss_pred cccccccCcccccCCCCCCchhhHHHHhhhhHHHHHHHHHHHHhCcchHhhhhccccccccchhhHhhhhhhhHhhhccc
Confidence 000 11 1223446688999999999999999876311 1
Q ss_pred --hHHHHHHHHHHhhhccCCCccccCcchhHHHHHHhccc----------hhhHHHHHHHHHHhhCCCCCC----Ccchh
Q 006827 416 --NVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMED----------ESQSFWCFVALMERLGPNFNR----DQNGM 479 (630)
Q Consensus 416 --~~~~L~~IL~ay~~~npdiGYvQGM~dL~apLL~v~~d----------E~~AFw~f~~lm~~~~~~F~~----d~~gm 479 (630)
......|||..|+..||.+|||||||.|+|||++|+.+ |++||+||+.||-..++||.. ...|+
T Consensus 168 gl~~~~~erilfiyAKLNpGi~YVQGMNEIlaPiYYVfa~Dpd~e~~~~aEaDaFFCF~~LMseirDnf~k~LDdS~~GI 247 (370)
T KOG4567|consen 168 GLTRFAAERILFIYAKLNPGIGYVQGMNEILAPIYYVFANDPDEENRAYAEADAFFCFTQLMSEIRDNFIKTLDDSVGGI 247 (370)
T ss_pred chhhhHHHHHHHHHhhcCCcchHHhhhHHHhhhhheeeccCCchhhHHhhhhhHHHHHHHHHHHHHHHHHHhccccccch
Confidence 12235789999999999999999999999999999953 899999999999999999853 33588
Q ss_pred hhhHHHHHHHHHhhChhhhhHHhhcCCCcchhHHHHHHHhcCcCCcHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHH
Q 006827 480 HSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRN 559 (630)
Q Consensus 480 ~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfltlF~ref~~~~vlrLWD~~~~~~~~~~f~l~valAIL~~~r~ 559 (630)
+..+..+..+|+.+|-+||.||+..++.+.+|+|||+.++++.|||+++|+||||.++++.....|++++|+|+|...|+
T Consensus 248 ~~~Msr~~~~lk~~D~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~rfd~Ll~iCcsmlil~Re 327 (370)
T KOG4567|consen 248 HFLMSRLSELLKKHDEELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQRFDFLLYICCSMLILVRE 327 (370)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhhhHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999888889999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhc
Q 006827 560 KIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICAG 599 (630)
Q Consensus 560 ~Il~~~~d~deIlk~ln~l~~~id~~~iL~~A~~L~~~~~ 599 (630)
.|++. ||+.-++.+++.| +.|+..++..|..|.....
T Consensus 328 ~il~~--DF~~nmkLLQ~yp-~tdi~~~l~~A~~Lr~~k~ 364 (370)
T KOG4567|consen 328 RILEG--DFTVNMKLLQNYP-TTDISKMLAVADSLRDKKH 364 (370)
T ss_pred HHHhc--chHHHHHHHhcCC-CCCHHHHHHHHHHHHhccc
Confidence 99965 9999999999998 9999999999999985443
No 5
>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-40 Score=355.51 Aligned_cols=252 Identities=26% Similarity=0.406 Sum_probs=217.7
Q ss_pred HHHHHhchhcc-------CCCCChHHHHHHHHhCCCChhhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHhhh
Q 006827 303 SEEWTTFLDNE-------GRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQ 375 (630)
Q Consensus 303 ~~~W~~~l~~~-------g~~~~~~~Lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~lk~~~~ 375 (630)
..+|...+..+ .-..-.+++|+ ++|+|||+++|+.||..+.|.... ...+..|++++..-.
T Consensus 123 ~~~~~l~~~~~~~~~~~~~~~~~s~elk~-liRkGiP~~~R~~VW~~~~g~~~~-----------~~~~~~yq~ll~~~~ 190 (436)
T KOG2058|consen 123 QLRWELELQSNIKLHSPNDFPPRSDELKR-LIRKGIPPELRGEVWWVLSGARRQ-----------LNYPGYYQELLRKGD 190 (436)
T ss_pred HHHHHHHhhhhhcccccccccCCcHHHHH-HHHcCCChhhhhHHHHHHhcchhh-----------ccCchhHHHHHhcCC
Confidence 35677766553 11244678888 569999999999999999994211 111677888775421
Q ss_pred cCChHHHhhhhhhhhccccccccccccCCCC-ccccCCCChhHHHHHHHHHHhhhccCCCccccCcchhHHHHHHhccch
Q 006827 376 SISPEQARRFTKFRERKGLIDKDVVRTDRSV-TFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDE 454 (630)
Q Consensus 376 ~~~~~q~~~~~~~~e~~~~IekDV~RT~~~~-~~f~~~~~~~~~~L~~IL~ay~~~npdiGYvQGM~dL~apLL~v~~dE 454 (630)
.. . .....+|+.|+.||+|++ +.|..++..++..|+|||.||+++||++|||||||.|||++|++|++|
T Consensus 191 ~~------~----~~~~~qI~~DL~RTfP~n~~~~~~~~~~~~~~LrRvL~Aya~hNp~vGYCQGmNflAallLL~~~~E 260 (436)
T KOG2058|consen 191 EK------K----SPVVKQIKLDLPRTFPDNFKGFDSEDSDGRQTLRRVLLAYARHNPSVGYCQGMNFLAALLLLLMPSE 260 (436)
T ss_pred Cc------c----chHHHHHHhccccccCCCcccCCCCCchHHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHhcCCh
Confidence 10 0 024569999999999999 899998888899999999999999999999999999999999999889
Q ss_pred hhHHHHHHHHHHhhCCC-CCCCcchhhhhHHHHHHHHHhhChhhhhHHhhcCCCcchhHHHHHHHhcCcCCcHHHHHHHH
Q 006827 455 SQSFWCFVALMERLGPN-FNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLW 533 (630)
Q Consensus 455 ~~AFw~f~~lm~~~~~~-F~~d~~gm~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfltlF~ref~~~~vlrLW 533 (630)
++|||||+.+.+++.+. |..++.|.+....+|+.|++..+|+|+.||+.++++..++++.||+++|+..+|.+.++|||
T Consensus 261 E~AFW~Lv~iie~~lp~Yyt~nL~g~qvDQ~VL~~llre~lPkl~~~l~~~~~~~~l~t~~wfLt~f~d~lP~~t~LrIw 340 (436)
T KOG2058|consen 261 EDAFWMLVALIENYLPRYYTPNLIGSQVDQKVLRELLREKLPKLSLHLEGNGVDASLETLPWFLTLFVDILPSETVLRIW 340 (436)
T ss_pred HHHHHHHHHHHHHhchhhcCchhhhhhccHHHHHHHHHHHCHHHHHhhhhcCCCeeeeehhhhHHHhcccccHHHHHHHH
Confidence 99999999999998875 66888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccchhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhCC
Q 006827 534 EVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELS 579 (630)
Q Consensus 534 D~~~~~~~~~~f~l~valAIL~~~r~~Il~~~~d~deIlk~ln~l~ 579 (630)
|++|.+| .+++|.+|||+++.+++.|+++. +..++++++..+.
T Consensus 341 D~~f~eG--skvlfr~Alai~k~~ee~il~~~-~~~~i~~~~~~~~ 383 (436)
T KOG2058|consen 341 DCLFYEG--SKVLFRVALAILKKHEEEILKED-SSKEILRVLPDLT 383 (436)
T ss_pred HHHHhcc--cHHHHHHHHHHHHHhHHHHhcCC-CHHHHHHHHHHHH
Confidence 9999776 78999999999999999999987 8999999998875
No 6
>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-39 Score=336.20 Aligned_cols=277 Identities=27% Similarity=0.516 Sum_probs=242.1
Q ss_pred CCCChHHHHHHHHhCCCChhhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHhhhcCChHHHhhhhhhhhcccc
Q 006827 315 RVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGL 394 (630)
Q Consensus 315 ~~~~~~~Lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~lk~~~~~~~~~q~~~~~~~~e~~~~ 394 (630)
..++.++||+ ++++|||...|+.+|+.|+|+.|.++ +-|+...+.++.+|..++.++........ .-.+..+|
T Consensus 174 ~~id~~~Lr~-l~w~Gvp~~~Rp~~Wkll~gylp~n~--~rr~~~l~~Kr~eY~~~v~~~~~~~~~~~----~~~d~~rQ 246 (484)
T KOG1092|consen 174 PIIDLEKLRK-LCWNGVPSKMRPIVWKLLSGYLPPNS--DRREGTLQRKRKEYVDSVVQYFDSLTNGD----EDQDTWRQ 246 (484)
T ss_pred ccccHHHHHH-HccCCCCccccCccceeeecccCcch--hhhhhhHHHHHHHHHHHHHHHhccCCCcc----ccCccccc
Confidence 3477888888 67999999999999999999988764 44677888999999999998776433211 22245689
Q ss_pred ccccccccCCCCccccCCCChhHHHHHHHHHHhhhccCCCccccCcchhHHHHHHhcc----------------------
Q 006827 395 IDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVME---------------------- 452 (630)
Q Consensus 395 IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~npdiGYvQGM~dL~apLL~v~~---------------------- 452 (630)
|..|+.|+.|..++|..+- .++.+.+||..++.++|-.||+||.+|++.|+++++.
T Consensus 247 I~id~prm~p~~~l~q~~~--vq~~lerIl~iwairhpAsGyvqgindlvtpf~vvfl~e~l~~~~~~~~~d~~~l~~E~ 324 (484)
T KOG1092|consen 247 IPIDIPRMNPHIPLFQQKI--VQEMLERILYIWAIRHPASGYVQGINDLVTPFFVVFLSEYLGPIMDVESIDMSLLPAEN 324 (484)
T ss_pred cccCCCCCCccccchhhHH--HHHHHHHHHHHHHHhcccccccccceeeechhhhhhhHhhcCccccccccchhhccHHH
Confidence 9999999999999998543 5688999999999999999999999999999998872
Q ss_pred ---chhhHHHHHHHHHHhhCCCCCCCcchhhhhHHHHHHHHHhhChhhhhHHhhcCCCcchhHHHHHHHhcCcCCcHHHH
Q 006827 453 ---DESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKT 529 (630)
Q Consensus 453 ---dE~~AFw~f~~lm~~~~~~F~~d~~gm~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfltlF~ref~~~~v 529 (630)
-|++||||+.+|++.+..||...|+|++.++..|++|++.+|+.||+||+++|++...|+|||+-++|.||||+..+
T Consensus 325 ~~~iEADsyWClskLLD~IQDNYtfaQpGIq~kV~~L~eLv~RID~~~hkHlq~~gveylQFAFRWmNcLLmRE~pl~~~ 404 (484)
T KOG1092|consen 325 AEDIEADAYWCLSKLLDGIQDNYTFAQPGIQRKVKNLKELVQRIDEPLHKHLQEHGVEYLQFAFRWMNCLLMREFPLRCT 404 (484)
T ss_pred HhhhhhhHHHHHHHHHHHhhhhhhhcChhHHHHHHHHHHHHHHhcHHHHHHHHHhchHHHHHHHHHHHHHHHhhccchhH
Confidence 18999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccc-hhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCC----CCHHHHHHHHHHHHHhhccCC
Q 006827 530 MRLWEVLWTHYLS-EHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGR----IDLDAILRDAEALCICAGENG 602 (630)
Q Consensus 530 lrLWD~~~~~~~~-~~f~l~valAIL~~~r~~Il~~~~d~deIlk~ln~l~~~----id~~~iL~~A~~L~~~~~e~~ 602 (630)
+||||.++++..+ .+||+|||+|.|.+.+++|+ ++||.+++-||+++|.. -+++-+|..|..+...+..+.
T Consensus 405 iRlWDTY~aE~dgf~~FhvYvcAAFL~kW~~eL~--e~DFQ~~ilfLQnlPT~~W~d~eIellLseA~~~k~~f~da~ 480 (484)
T KOG1092|consen 405 IRLWDTYLAEPDGFNEFHVYVCAAFLLKWSSELM--ENDFQELILFLQNLPTHNWSDREIELLLSEAFRLKSVFSDAP 480 (484)
T ss_pred HHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHccch
Confidence 9999999998544 57999999999999999999 45999999999999844 367778888887776665544
No 7
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=100.00 E-value=1.9e-38 Score=312.75 Aligned_cols=196 Identities=35% Similarity=0.649 Sum_probs=173.7
Q ss_pred HhCCCChhhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHhhhcCChHHHhhhhhhhhccccccccccccCCCC
Q 006827 327 FYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSV 406 (630)
Q Consensus 327 ~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~lk~~~~~~~~~q~~~~~~~~e~~~~IekDV~RT~~~~ 406 (630)
+++|||+++|+.||+.++|+.+...+ .....|.++++++..... ...++|++||.||+|++
T Consensus 1 ~~~Gip~~~R~~vW~~ll~~~~~~~~---------~~~~~Y~~l~~~~~~~~~----------~~~~~I~~Dv~Rt~~~~ 61 (199)
T smart00164 1 VRKGVPPSLRGVVWKLLLNAQPMDTS---------ADKDLYSRLLKETAPKDK----------SIVHQIEKDLRRTFPEH 61 (199)
T ss_pred CCCCCCHHHHHHHHHHHhCCchhhhc---------ccchHHHHHHHhhcCCCh----------hhHHHHhcccCCCCCCc
Confidence 37899999999999999999764422 136788888876543221 13469999999999999
Q ss_pred ccccCCCChhHHHHHHHHHHhhhccCCCccccCcchhHHHHHHhccchhhHHHHHHHHHHhhCCC-CCCCcchhhhhHHH
Q 006827 407 TFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPN-FNRDQNGMHSQLFA 485 (630)
Q Consensus 407 ~~f~~~~~~~~~~L~~IL~ay~~~npdiGYvQGM~dL~apLL~v~~dE~~AFw~f~~lm~~~~~~-F~~d~~gm~~~l~~ 485 (630)
++|+.+..++++.|+|||.+|+.+||++||||||++||++|+.++.+|++|||||+++|+++..+ |..+..++...+..
T Consensus 62 ~~f~~~~~~~~~~L~~IL~~~~~~~p~~gY~QGm~~i~~~ll~~~~~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 141 (199)
T smart00164 62 SFFQDKEGPGQESLRRVLKAYALYNPEVGYCQGMNFLAAPLLLVMPDEEDAFWCLVKLMERYGPNFYLPDMSGLQLDLLQ 141 (199)
T ss_pred hhhcCCCcccHHHHHHHHHHHHHHCCCCceeccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHH
Confidence 99998777889999999999999999999999999999999999988999999999999998877 55666789999999
Q ss_pred HHHHHHhhChhhhhHHhh-cCCCcchhHHHHHHHhcCcCCcHHHHHHHHHHHHhhcc
Q 006827 486 LSKLVELLDNPLHNYFKQ-NDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYL 541 (630)
Q Consensus 486 l~~LL~~~dP~L~~hL~~-~~i~~~~f~~rWfltlF~ref~~~~vlrLWD~~~~~~~ 541 (630)
++.+++..+|+||+||++ .++.+..|+++||+++|+++||++.++||||+++.+|.
T Consensus 142 ~~~ll~~~~p~l~~~l~~~~~i~~~~~~~~W~~~lF~~~~~~~~~~riwD~~l~eG~ 198 (199)
T smart00164 142 LDRLVKEYDPDLYKHLKDKLGIDPSLYALRWFLTLFARELPLEIVLRIWDVLFAEGS 198 (199)
T ss_pred HHHHHHHHCHHHHHHHHHhcCCCchhHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Confidence 999999999999999996 99999999999999999999999999999999998873
No 8
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=7.1e-38 Score=322.90 Aligned_cols=281 Identities=21% Similarity=0.380 Sum_probs=232.4
Q ss_pred chhccCCCCChHHHHHHHHhCCCChhhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHH-HHHHHHhhhcCChHHHhhhhh
Q 006827 309 FLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSE-YENIKRQWQSISPEQARRFTK 387 (630)
Q Consensus 309 ~l~~~g~~~~~~~Lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~-Y~~lk~~~~~~~~~q~~~~~~ 387 (630)
++.+|....+...++. ++|.|||+.+|++||....|. ..+-|.+-.........+. ...+-++-.. .-..
T Consensus 281 ILpnWe~m~~SrR~re-lWwQGiP~~VRGkvW~laIGN-el~it~elfd~~la~Aker~ak~~aeq~~~-------sa~~ 351 (586)
T KOG2223|consen 281 ILPNWEDMLKSRRVRE-LWWQGIPPSVRGKVWSLAIGN-ELNITYELFDIALARAKEREAKSLAEQMSN-------SAAD 351 (586)
T ss_pred hccchHHHHhhHHHHH-HHHccCChhhcchhhHhhhCc-ccccCHHHHHHHHHHHHHHHHHHHHhhccc-------chhh
Confidence 3334444445567777 899999999999999999996 4455555444443333222 2223222110 1112
Q ss_pred hhhccccccccccccCCCCccccCCCChhHHHHHHHHHHhhhccCCCccccCcchhHHHHHHhccchhhHHHHHHHHHHh
Q 006827 388 FRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMER 467 (630)
Q Consensus 388 ~~e~~~~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~npdiGYvQGM~dL~apLL~v~~dE~~AFw~f~~lm~~ 467 (630)
......+|+.|+.||||+..+|+.+ +|....|..||.+|+.|.||+||||||+.|+|+|++.| |+.+||-||.+|+++
T Consensus 352 re~sv~~i~LDisrTfpsl~iFqk~-GPy~d~L~~lL~AYt~yRpDvgYVqgmSFIaAvLllnm-d~~~AFiafANLLdk 429 (586)
T KOG2223|consen 352 REASVELIKLDISRTFPSLSIFQKG-GPYHDDLHSLLGAYTCYRPDVGYVQGMSFIAAVLLLNM-DLADAFIAFANLLDK 429 (586)
T ss_pred hhcchhheeechhccCcceeeeccC-CchHHHHHHHhhhheeecCccccccchHHHHHHHHHcC-CcHHHHHHHHHHhcc
Confidence 3345789999999999999999965 78899999999999999999999999999999999999 599999999999998
Q ss_pred hCC--CCCCCcchhhhhHHHHHHHHHhhChhhhhHHhhcCCCcchhHHHHHHHhcCcCCcHHHHHHHHHHHHhhccchhH
Q 006827 468 LGP--NFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHL 545 (630)
Q Consensus 468 ~~~--~F~~d~~gm~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfltlF~ref~~~~vlrLWD~~~~~~~~~~f 545 (630)
-.. .|..|++.|...+.+|+..++...|+|+.||++.++.+..|.+.|+.++|+..+|.+..+||||+|+-+| +.|
T Consensus 430 p~q~Aff~~d~s~m~~yf~tfe~~leenlp~L~~Hl~kl~l~PDiylidwiftlyskslpldlacRIwDvy~rdg--eeF 507 (586)
T KOG2223|consen 430 PCQQAFFRVDHSSMLSYFATFEVFLEENLPKLFTHLKKLELTPDIYLIDWIFTLYSKSLPLDLACRIWDVYCRDG--EEF 507 (586)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHhccHHHHHHHHhccCCCchhhHHHHHHHHhccCChHHhhhhhheeeecc--hHH
Confidence 543 5888999999999999999999999999999999999999999999999999999999999999998665 789
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhccCCCC
Q 006827 546 HLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICAGENGAA 604 (630)
Q Consensus 546 ~l~valAIL~~~r~~Il~~~~d~deIlk~ln~l~~~id~~~iL~~A~~L~~~~~e~~~~ 604 (630)
++..+++||+.++++++ .|||..+.+|+..+|.++..+++...-..+..+...+.++
T Consensus 508 lfr~~lgIlklyepkLl--~mDf~~~~qfLtklp~dL~~eelF~~i~~~~~~sr~kkws 564 (586)
T KOG2223|consen 508 LFRTALGILKLYEPKLL--VMDFIHVAQFLTKLPEDLTPEELFMHIAYIQMQSRSKKWS 564 (586)
T ss_pred HHHHHHHHHHHccchHh--hhhHHHHHHHHHhCcccCCHHHHHHHHHHHhhhhhchhHH
Confidence 99999999999999999 7899999999999999999998877766666664444443
No 9
>COG5210 GTPase-activating protein [General function prediction only]
Probab=100.00 E-value=1.7e-35 Score=330.43 Aligned_cols=247 Identities=32% Similarity=0.556 Sum_probs=209.3
Q ss_pred CCCCHHHHHhchhccCCC---CChHHHHHHHHhCCCChhhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHhhh
Q 006827 299 PPLGSEEWTTFLDNEGRV---MDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQ 375 (630)
Q Consensus 299 ~pl~~~~W~~~l~~~g~~---~~~~~Lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~lk~~~~ 375 (630)
.+.....|.++++.++.. ....++++++ +.|||+.+|+.||.+++|++++... ....|..+.....
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~gip~~~r~~vw~~~~~~~~~~~~----------~~~~y~~~~~~~~ 247 (496)
T COG5210 179 ELAADKLWISYLDPNPLSFLPVQLSKLRELI-RKGIPNELRGDVWEFLLGIGFDLDK----------NPGLYERLLNLHR 247 (496)
T ss_pred hhHHHHHHHHHHhcccchhhhhhHHHHHHHH-HhcCChHhhhhhHHHHhccchhhcc----------CchHHHHHHHHHH
Confidence 455677889988887762 5667888855 7789999999999999999776532 3445555544322
Q ss_pred cCChHHHhhhhhhhhccccccccccccCCCCccccCCCChhHHHHHHHHHHhhhccCCCccccCcchhHHHHHHhccchh
Q 006827 376 SISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDES 455 (630)
Q Consensus 376 ~~~~~q~~~~~~~~e~~~~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~npdiGYvQGM~dL~apLL~v~~dE~ 455 (630)
.... ...+..++|++||.||+|.+..|+.+...+.+.|+|||.+|+.|||++||||||++|++|||++|.+|+
T Consensus 248 ~~~~-------~~~~~~~~i~~Dl~rt~~~~~~f~~~~s~~~~~L~rvL~ays~~~p~vgY~QgMn~l~a~ll~~~~~Ee 320 (496)
T COG5210 248 EAKI-------PTQEIISQIEKDLSRTFPDNSLFQTEISIRAENLRRVLKAYSLYNPEVGYVQGMNFLAAPLLLVLESEE 320 (496)
T ss_pred hcCC-------CcHHHHHHHHccccccccccccccCcccccHHHHHHHHHHHHhcCCCCceeccHHHHHHHHHHHhhhhH
Confidence 1110 011356799999999999999999877665667999999999999999999999999999999998899
Q ss_pred hHHHHHHHHHH--hhCCCCCCCcchhhhhHHHHHHHHHhhChhhhhHHhhcCCCcchhHHHHHHHhcCcCCcHHHHHHHH
Q 006827 456 QSFWCFVALME--RLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLW 533 (630)
Q Consensus 456 ~AFw~f~~lm~--~~~~~F~~d~~gm~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfltlF~ref~~~~vlrLW 533 (630)
.|||||++||+ .+..+|..+++|++.++.++..+++.++|+||+||...++....|+++||+++|.++||.+.++|||
T Consensus 321 ~AF~~l~~L~~~~~l~~~~~~~~~G~~~~~~~l~~~v~~~~p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriw 400 (496)
T COG5210 321 QAFWCLVKLLKNYGLPGYFLKNLSGLHRDLKVLDDLVEELDPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIW 400 (496)
T ss_pred HHHHHHHHHHHhccchhhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHH
Confidence 99999999999 3566799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccchhHHHHHHHHHHHHHHHHHhcCC
Q 006827 534 EVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQ 565 (630)
Q Consensus 534 D~~~~~~~~~~f~l~valAIL~~~r~~Il~~~ 565 (630)
|++|++| ..+++.+++|++...++.++...
T Consensus 401 D~lf~eg--~~~l~~~~~~~l~~~~~~l~~~~ 430 (496)
T COG5210 401 DCLFLEG--SSMLFQLALAILKLLRDKLLKLD 430 (496)
T ss_pred HHHHHhc--cHHHHHHHHHHHHhhhhhhhccC
Confidence 9999988 45778888899999999888554
No 10
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [].; GO: 0005097 Rab GTPase activator activity, 0032313 regulation of Rab GTPase activity, 0005622 intracellular; PDB: 2G77_A 1FKM_A 3HZJ_A 3QYE_A 2QFZ_A 3QYB_A 2QQ8_A 3DZX_A 3QWL_A.
Probab=100.00 E-value=8.8e-34 Score=281.63 Aligned_cols=212 Identities=33% Similarity=0.615 Sum_probs=166.5
Q ss_pred hhhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHhhhcCChHHHhhhhhhhhccccccccccccCCCCccccCC
Q 006827 333 HKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGD 412 (630)
Q Consensus 333 ~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~lk~~~~~~~~~q~~~~~~~~e~~~~IekDV~RT~~~~~~f~~~ 412 (630)
+++|+.||+.|+|+.+ .. ...|...+.++...............+..++|++||.||+++...+ .
T Consensus 1 ~~~R~~vW~~ll~~~~----~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Dv~rt~~~~~~~--~ 65 (214)
T PF00566_consen 1 HSLRGQVWKILLGIEP----NY---------SNNYQDEKNQWEQIESKSSNSNKLDNKIFEQIDKDVNRTFPNSFLF--K 65 (214)
T ss_dssp -CCHHHHHHHHCTCSC----HH---------HHHHHHHHHHHHHHHHHHHHCTSTCHTCHHHHHHHHCTSSTSCCCS--T
T ss_pred CChHHHHHHHHHccch----hh---------hhhHHHHhhhhhhhhHHHHHhccccchHHHHHHHhhhhhcccchhh--h
Confidence 4689999999999865 11 1111111111111111111112233455789999999999955333 4
Q ss_pred CChhHHHHHHHHHHhhhccCCCccccCcchhHHHHHHhccchhhHHHHHHHHH-HhhCCCCCCCcchhhhhHHHHHHHHH
Q 006827 413 DNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALM-ERLGPNFNRDQNGMHSQLFALSKLVE 491 (630)
Q Consensus 413 ~~~~~~~L~~IL~ay~~~npdiGYvQGM~dL~apLL~v~~dE~~AFw~f~~lm-~~~~~~F~~d~~gm~~~l~~l~~LL~ 491 (630)
+..+++.|.+||.+|+.++|++||+|||++|+++++.++.+|++|||||+++| ......|..+.++++..+..++.+++
T Consensus 66 ~~~~~~~l~~iL~~~~~~~~~~~Y~qG~~~i~~~ll~~~~~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 145 (214)
T PF00566_consen 66 NEQNQKSLERILSAYAKYNPDVGYCQGMNDIAAPLLLVFLDEEEAFWCFVQLLNYYLPDFFQPNFKGLQKILKIFEQLLK 145 (214)
T ss_dssp THHHHHHHHHHHHHHHHHTTTTSS-TTHHHHHHHHHHTCSHHHHHHHHHHHHHTHHGGGGTSTTHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccccccccccchhhhhhhhhhhhcccccchhccccchhcccccccccccccccchhhhhHHHHHH
Confidence 46788999999999999999999999999999999988889999999999999 44556677777899999999999999
Q ss_pred hhChhhhhHHhhcCCCcchhHHHHHHHhcCcCCcHHHHHHHHHHHHhhccchhH-HHHHHHHHHHHHHHHHh
Q 006827 492 LLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHL-HLYVCVAILKRYRNKIM 562 (630)
Q Consensus 492 ~~dP~L~~hL~~~~i~~~~f~~rWfltlF~ref~~~~vlrLWD~~~~~~~~~~f-~l~valAIL~~~r~~Il 562 (630)
.++|+|++||++.++.+..|+++|++++|++++|++.++|||| ++.+|. ++ ++++|+|||...|++||
T Consensus 146 ~~~P~l~~~l~~~~~~~~~~~~~w~~~lF~~~l~~~~~~~lwD-~l~~g~--~~~l~~~~lail~~~~~~il 214 (214)
T PF00566_consen 146 KHDPELYNHLKQLGVDPEIYAFPWFLTLFSRSLPFDDVLRLWD-FLLEGY--KFFLFFIALAILKYLRDQIL 214 (214)
T ss_dssp HHTHHHHHHHHHTT-GGHHHHHHHHHTTTTTTS-HHHHHHHHH-HHHHCT--THHHHHHHHHHHHHTHHHHH
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhHhhcCCcCCHHHHHHHHH-HHHcCC--CcHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999 555653 45 89999999999999987
No 11
>PF12068 DUF3548: Domain of unknown function (DUF3548); InterPro: IPR021935 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes and is typically between 184 to 216 amino acids in length. The domain is found associated with PF00566 from PFAM and at the N terminus of GYP7 proteins.
Probab=100.00 E-value=1.3e-33 Score=276.87 Aligned_cols=123 Identities=30% Similarity=0.647 Sum_probs=105.1
Q ss_pred CcEEEEeeCCeEEccCccc----cCCCCccEEEEeeCCceEEEeEecCCCCC-Cc-ccc-------------------cc
Q 006827 42 GAELVYLKDNVTIHPTQFA----SERISGRLKLIKQGSSLFMTWIPYKGQNS-NT-RLS-------------------EK 96 (630)
Q Consensus 42 ~~~Llf~Ks~V~vhPt~~~----~d~I~G~L~l~~~~~~~~l~W~P~~~~~~-~~-~~~-------------------~~ 96 (630)
.++|||+|+|||||||+.. ++||||||+|++++++++|+|+|.++..+ +. .++ +.
T Consensus 3 ~~kllfeKsgVyIHps~~~~~~~d~~IpGfL~Ivek~~~~~l~w~P~e~~~d~s~~l~s~~d~ss~~~~~~~~~~~~~e~ 82 (213)
T PF12068_consen 3 SVKLLFEKSGVYIHPSASKHSDQDDNIPGFLRIVEKDSEVLLEWSPSEDSSDASQVLYSWKDSSSVVESDETDFDSGYEP 82 (213)
T ss_pred cceEEEEeCCEEEcCCccccCcccccCCeEEEEEEeCCCcccccCCcccccCcchheecccCccccccccccccCCCcCC
Confidence 5899999999999999988 89999999999999999999999887411 10 000 00
Q ss_pred ------------------------ccCcceeeeeeCCceeEEEecCCCCCceEEEEEeCCCCCCCCeeecCCChHHHHHH
Q 006827 97 ------------------------DRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYTGGVREFLAT 152 (630)
Q Consensus 97 ------------------------~~~~y~~~~v~ls~i~si~~~~p~~G~~~~vl~~~dG~~~PpL~Fh~GG~~~fl~~ 152 (630)
+....++|+|||+|||||++++|++|||||||++|||+.+||||||+||+++||++
T Consensus 83 dw~~vnt~~~~~~~~s~~~~s~~~~~~~~~aFsv~lsdl~Si~~~~p~~G~~~lv~~~kdG~~~p~L~Fh~gg~~~fl~~ 162 (213)
T PF12068_consen 83 DWAVVNTVSKKKRLHSSSPASSPSSSRSSYAFSVPLSDLKSIRVSKPSLGWWYLVFILKDGTSLPPLHFHDGGSKEFLKS 162 (213)
T ss_pred CcccccCCCCccccCCCCCCCCCcCCCcceEEEEEhhheeeEEecCCCCCceEEEEEecCCCccCceEEecCCHHHHHHH
Confidence 00112369999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccccccc
Q 006827 153 IKQHVLLVRAVS 164 (630)
Q Consensus 153 L~~~~~l~r~~~ 164 (630)
|++|+.|.||..
T Consensus 163 L~~~v~l~~S~~ 174 (213)
T PF12068_consen 163 LQRYVTLARSPR 174 (213)
T ss_pred HHhhEEEeecCC
Confidence 999999999643
No 12
>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only]
Probab=99.96 E-value=2e-29 Score=262.15 Aligned_cols=262 Identities=21% Similarity=0.405 Sum_probs=220.7
Q ss_pred HHHhchhccCCCCChHHHHHHHHhCCCChhhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHhhhcCChHHHhh
Q 006827 305 EWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARR 384 (630)
Q Consensus 305 ~W~~~l~~~g~~~~~~~Lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~lk~~~~~~~~~q~~~ 384 (630)
-|+-+ .|.....++++..+-.||||+.+|+.+|+.|.|.. ..++.....|+...++......
T Consensus 148 ~w~hi---~~~~~ktdk~~~llkeggiphslr~~lw~rlsga~----------~kkk~ae~sy~~ilk~~andk~----- 209 (848)
T KOG2222|consen 148 LWEHI---DGMELKTDKFEELLKEGGIPHSLRAFLWMRLSGAL----------AKKKDAETSYEDILKACANDKL----- 209 (848)
T ss_pred hHHhh---cccccchHHHHHHHHcCCCCcchhHHHHHHhhhhh----------hhhccccccHHHHHHHhccccc-----
Confidence 36554 36667788898888789999999999999999973 2233445668888876543211
Q ss_pred hhhhhhccccccccccccCCCCccccCCCChhHHHHHHHHHHhhhccCCCccccCcchhHHHHHHhccchhhHHHHHHHH
Q 006827 385 FTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVAL 464 (630)
Q Consensus 385 ~~~~~e~~~~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~npdiGYvQGM~dL~apLL~v~~dE~~AFw~f~~l 464 (630)
..-.||+||+.|+.|++..|..+++.+...|+|||.+.++..|++||||||.-|+|.||+++. |+.|||++..+
T Consensus 210 -----~~~~qiekdllr~lpnn~cf~k~n~~gi~~lrrilk~ia~ifpdigycqg~gviva~lllf~~-ee~afwmmaai 283 (848)
T KOG2222|consen 210 -----MIGKQIEKDLLRILPNNACFSKKNGEGIEALRRILKCIAFIFPDIGYCQGMGVIVACLLLFCE-EENAFWMMAAI 283 (848)
T ss_pred -----chhHHHHHHHHHhCCCcceeeCCCCcchHHHHHHHhhheeecCCcccccCccHHHHHHHHHhc-chhHHHHHHHH
Confidence 123599999999999999999999999999999999999999999999999999999999996 89999999999
Q ss_pred HHhhCC-CCC-CCcchhhhhHHHHHHHHHhhChhhhhHHhhcCCCcchhHHHHHHHhcCcCCcHHHHHHHHHHHHhhccc
Q 006827 465 MERLGP-NFN-RDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLS 542 (630)
Q Consensus 465 m~~~~~-~F~-~d~~gm~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfltlF~ref~~~~vlrLWD~~~~~~~~ 542 (630)
++.+.+ ||. ...-|++..-.++..|++-+.|.|-+-|+..++...+....||+|+|...|....++||||.||.+|
T Consensus 284 iedilp~nfysqtllgiqaderv~~~li~~~l~~ldeal~~~dielslitl~w~ltlf~nv~~~killriwd~~fy~g-- 361 (848)
T KOG2222|consen 284 IEDILPANFYSQTLLGIQADERVMHHLIACHLPDLDEALEDHDIELSLITLHWFLTLFANVFHMKILLRIWDFFFYEG-- 361 (848)
T ss_pred HHHhcCchhhhhhHhccchhHHHHHHHHHhccCchhHHHHhccceeeehHHHHHHHHHHHHHHHHHHHHHHHhheecC--
Confidence 998765 554 5567999999999999999999999999999999999999999999999999999999999999665
Q ss_pred hhHHHHHHHHHHHHHHHHHhcC---CCCHHHHHHHHHhCCCC-CCHHHHHHHHH
Q 006827 543 EHLHLYVCVAILKRYRNKIMGE---QMDFDTLLKFINELSGR-IDLDAILRDAE 592 (630)
Q Consensus 543 ~~f~l~valAIL~~~r~~Il~~---~~d~deIlk~ln~l~~~-id~~~iL~~A~ 592 (630)
.--++.+.++||+..++.|... ..+..+|..-+.++|.. -|++.++..|-
T Consensus 362 ~i~ifql~i~ilkmkeqdi~~iaettensa~if~als~ip~~vtdve~l~~~~~ 415 (848)
T KOG2222|consen 362 GINIFQLIIGILKMKEQDIKEIAETTENSADIFNALSDIPAEVTDVEKLFEQAG 415 (848)
T ss_pred cchhHHHHHHHHHhhHHHHHHHHHhcccHHHHHHHHHhCCchhhhHHHHHHHHh
Confidence 4566789999999999887743 23677888889999866 47777776664
No 13
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=99.96 E-value=1.1e-28 Score=263.02 Aligned_cols=254 Identities=20% Similarity=0.349 Sum_probs=212.6
Q ss_pred cCCCCChHHHHHHHHhCCCChhhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHhhhcCChHHHhhhhhhhhcc
Q 006827 313 EGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERK 392 (630)
Q Consensus 313 ~g~~~~~~~Lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~lk~~~~~~~~~q~~~~~~~~e~~ 392 (630)
+|-......+.+ --++|+|+-+|+.+|.-||++-. .....|-.+- +..+. ...
T Consensus 339 ~g~~~k~~qI~r-~a~vdvpp~~R~~iW~aLL~l~e-------------~~~a~y~~ID-k~Ts~------------~td 391 (725)
T KOG1093|consen 339 DGYPKKRLQILR-EAYVDVPPLYRGFIWAALLQLEE-------------NHTAFYTLID-KGTSH------------STD 391 (725)
T ss_pred ccchHHHHHHHH-HhccCCChhHhHHHHHHHhcCcc-------------ccchhhhhhh-cCCCC------------cch
Confidence 344444444444 34799999999999999998721 1123343332 11111 224
Q ss_pred ccccccccccCCCCccccCCCChhHHHHHHHHHHhhhccCCCccccCcchhHHHHHHhc-cchhhHHHHHHHHHHhhCCC
Q 006827 393 GLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVM-EDESQSFWCFVALMERLGPN 471 (630)
Q Consensus 393 ~~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~npdiGYvQGM~dL~apLL~v~-~dE~~AFw~f~~lm~~~~~~ 471 (630)
.|||.|+.||.....+.+.++ ++++|+|+|.+|+..+|...|.||+..+++|+++.. .||..||-|+..|.-++.++
T Consensus 392 rqievdiprchQyd~~lsSp~--~~r~lrRvLkawv~~s~~fvywqgldsLa~PFl~ln~Nne~laF~~~~~fi~kycq~ 469 (725)
T KOG1093|consen 392 RQIEVDIPRCHQYDELLSSPK--GHRKLRRVLKAWVTWSPIFVYWQGLDSLAAPFLYLNFNNELLAFACIATFIPKYCQH 469 (725)
T ss_pred hhhhcccchhhhcccccCCHH--HHHHHHHHHHHHHhcCcceeecCCChhhhhhHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence 699999999987766666543 789999999999999999999999999999999875 57999999999999998877
Q ss_pred -CCC-CcchhhhhHHHHHHHHHhhChhhhhHHhhcCCCcchhHHHHHHHhcCcCCcHHHHHHHHHHHHhhccchhHHHHH
Q 006827 472 -FNR-DQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYV 549 (630)
Q Consensus 472 -F~~-d~~gm~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfltlF~ref~~~~vlrLWD~~~~~~~~~~f~l~v 549 (630)
|.. +..-++..+..|.+++..+||+|++||..+|+.+.+|+++||+|+|+++||.+.++.|||-++.+++ .|.+++
T Consensus 470 fflkdns~vikeyLs~f~~l~AfhDpeL~qHl~~~~f~~eLyAiPwflT~Fshvlpl~kil~LwD~lml~~~--SFplmi 547 (725)
T KOG1093|consen 470 FFLKDNSNVIKEYLSMFSQLLAFHDPELLQHLIDIGFIPELYAIPWFLTMFSHVLPLHKILHLWDNLMLGHS--SFPLMI 547 (725)
T ss_pred HHhhcCchhHHHHHHHHHHHHHhcCHHHHHHHHHcCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCC--ccHHHH
Confidence 445 3457789999999999999999999999999999999999999999999999999999999998874 599999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhcc
Q 006827 550 CVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICAGE 600 (630)
Q Consensus 550 alAIL~~~r~~Il~~~~d~deIlk~ln~l~~~id~~~iL~~A~~L~~~~~e 600 (630)
++||+...|+.++.+ +|.|.+.+|.++| ++|++.+++..+.++...+.
T Consensus 548 ~vAil~~lR~~LLa~--nfne~illf~d~p-dldId~~Ires~~l~e~tP~ 595 (725)
T KOG1093|consen 548 GVAILIQLRDPLLAC--NFNECILLFSDLP-DLDIDVCIRESYHLMETTPK 595 (725)
T ss_pred HHHHHHHhhhhhhhC--CchhheeeeccCC-cccHHHHHHHHhhhhhCCCC
Confidence 999999999999977 8999999999999 99999999999999985443
No 14
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=99.94 E-value=1.7e-26 Score=250.65 Aligned_cols=265 Identities=21% Similarity=0.349 Sum_probs=217.6
Q ss_pred HHHHhchhccCCCCCh---HHHHHHHHhCCCChhhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHhhhcCChH
Q 006827 304 EEWTTFLDNEGRVMDS---NALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPE 380 (630)
Q Consensus 304 ~~W~~~l~~~g~~~~~---~~Lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~lk~~~~~~~~~ 380 (630)
..|++++...|+.++. .++++ +.+.|+|...|+++|..+.|. ..-...+..+|.++.+...+
T Consensus 174 k~W~~~f~~~G~~~~~~qt~~~~K-lv~~gipe~~rgeiW~l~sGa----------v~~~l~~~Geygkll~~~~G---- 238 (671)
T KOG4347|consen 174 KFWKKYFIKDGPNMNQIQTILLRK-LLYNGFPEDPRGEIWYLASGA----------VASLLLNPGEYGKLLHSVTG---- 238 (671)
T ss_pred HHHHHHHHHhcccccHHHHHHHHH-HHHHhcCCChHHHHHHhhhHH----------HHHhhcCcHHhhhhhhcccC----
Confidence 5699999999998765 56777 558999999999999999996 33445678899988876443
Q ss_pred HHhhhhhhhhccccccccccccCCCCccccCCCChhHHHHHHHHHHhhhccCCCccccCcchhHHHHHHhccchhhHHHH
Q 006827 381 QARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWC 460 (630)
Q Consensus 381 q~~~~~~~~e~~~~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~npdiGYvQGM~dL~apLL~v~~dE~~AFw~ 460 (630)
+-......|++|..|..|+++-|+.+. +...|+|||.+|++.||++||||-||-+++.+|.++. |+.|||+
T Consensus 239 ------~~~~a~eEIE~Dl~rsLpEhpA~Q~e~--gi~aLR~vL~Aya~~Np~vGYcQaMNIV~s~lll~~~-EEeafwl 309 (671)
T KOG4347|consen 239 ------KRSVATEEIEPDLGRSLPEHPAFQSEP--GIAALRRVLTAYAWSNPEVGYCQAMNIVGSELLLFCK-EEEAFWL 309 (671)
T ss_pred ------CcccccccccCCCCCCCCcchhhhCCC--chhhHHHHHHhhhccCCchhHHHHHHHHHHhhhhhhc-cchHHHH
Confidence 112335689999999999999999755 6799999999999999999999999999999999985 9999999
Q ss_pred HHHHHHhhCCCCC-CCcchhhhhHHHHHHHHHhhChhhhhHHhhcCCCcchhHHHHHHHhcCcCCcHHHHHHHHHHHHhh
Q 006827 461 FVALMERLGPNFN-RDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTH 539 (630)
Q Consensus 461 f~~lm~~~~~~F~-~d~~gm~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfltlF~ref~~~~vlrLWD~~~~~ 539 (630)
++.+.+++.+.|. ...-|......+++.|++...|.|++|+...| ........||+++|-..+|++...||-|+|+.+
T Consensus 310 l~~lce~~ip~yys~~vvGtliDQ~vfe~lve~~lP~l~~~~~~l~-~l~~Vsl~WFlslFls~m~le~a~~ilD~FF~e 388 (671)
T KOG4347|consen 310 LSKLCEIYIPDYYSKTVVGTLIDQSVFEELVEDTLPVLGEHLAVLG-QLSTVSLSWFLSLFLSLMPLEYAVRILDCFFYE 388 (671)
T ss_pred HHHHHHHhcccccchhhhhhHHHHHHHHHHHHHhhhHHHHHhhhhc-ccceEeeHHHHHHHHHHcchHHHHHHHhhhhhc
Confidence 9999999988754 44556666666799999999999999999999 556788999999999999999999999999977
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhcCCCCHHHHHH----HHHhCC------------CCCCHHHHHHHHHHHHH
Q 006827 540 YLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLK----FINELS------------GRIDLDAILRDAEALCI 596 (630)
Q Consensus 540 ~~~~~f~l~valAIL~~~r~~Il~~~~d~deIlk----~ln~l~------------~~id~~~iL~~A~~L~~ 596 (630)
| ...++.|+|||++.+.+.|+.+. |=.+++. |+..+- ..+.+.++|..|..-|.
T Consensus 389 G--~rvlFqiaLail~~N~~~il~~~-dDge~~~vl~~y~~~i~~~~~~~~~~~~~~~~~i~~Ll~~ay~kFg 458 (671)
T KOG4347|consen 389 G--PRVLFQIALAILKQNAERILSAT-DDGEAMMVLGNYFDSIYNGDYPDESDHASDSIEIQDLLATAYEKFG 458 (671)
T ss_pred c--cHHHHHHHHHHHHhhHHHhcccC-CchHHHHHHHHHHHhccCCCCCccccchhhhhHHHHHHHHHHHHhc
Confidence 6 67889999999999999999887 4344444 444332 11335666666665443
No 15
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=99.94 E-value=3e-26 Score=251.80 Aligned_cols=257 Identities=21% Similarity=0.406 Sum_probs=216.5
Q ss_pred HHHHHhchhccCCC---CChHHHHHHHHhCCCChhhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHhhhcCCh
Q 006827 303 SEEWTTFLDNEGRV---MDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISP 379 (630)
Q Consensus 303 ~~~W~~~l~~~g~~---~~~~~Lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~lk~~~~~~~~ 379 (630)
.+.|++++.. ++. .+.+.+-.. .+.|||..-|++||.||.--+..+.-... .++...--|+.+.+
T Consensus 549 ~~~wek~~e~-~~~~~k~d~ed~~~~-l~~gvprsrrgeiwtflA~q~~~~~~l~~---~kr~~~~p~~~llk------- 616 (948)
T KOG4436|consen 549 IETWEKILER-TRIKIKKDMEDLHSA-LRTGVPRSRRGEIWTFLAEQHSLNHALPD---KKRPPDFPYKELLK------- 616 (948)
T ss_pred HHHHHHHHHH-hhhcccccHHHHHHH-HHccCchhhhHHHHHHHHHHHHHhccCCc---ccCCCCCChHHHHH-------
Confidence 3679998876 554 466777774 48999999999999999753211100000 00111122444433
Q ss_pred HHHhhhhhhhhccccccccccccCCCCccccCCCChhHHHHHHHHHHhhhccCCCccccCcchhHHHHHHhccchhhHHH
Q 006827 380 EQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFW 459 (630)
Q Consensus 380 ~q~~~~~~~~e~~~~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~npdiGYvQGM~dL~apLL~v~~dE~~AFw 459 (630)
.+.++.+.|..|.-||||++++|...-+.++..|.|+|.+|+..+|++|||||...++++||+.| +|+.||-
T Consensus 617 -------qLte~qhAi~idlgrtfp~h~~~~~qlg~gqlsl~n~Lkayslld~e~gycqg~~fv~gvlllh~-~e~~afe 688 (948)
T KOG4436|consen 617 -------QLTEQQHAILIDLGRTFPTHPYFSDQLGLGQLSLFNLLKAYSLLDPEVGYCQGLSFVAGVLLLHM-SEENAFE 688 (948)
T ss_pred -------HHHHHHHHHHHhhccccCCCHHHHhhccccHHHHHHHHHHhcccCccccccCcchhhhhhhHhhc-chhhHHH
Confidence 34566789999999999999999999999999999999999999999999999999999999999 5999999
Q ss_pred HHHHHHHh--hCCCCCCCcchhhhhHHHHHHHHHhhChhhhhHHhhcCCCcchhHHHHHHHhcCcCCcHHHHHHHHHHHH
Q 006827 460 CFVALMER--LGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLW 537 (630)
Q Consensus 460 ~f~~lm~~--~~~~F~~d~~gm~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfltlF~ref~~~~vlrLWD~~~ 537 (630)
++..||.. ++..|.+|+..++-++.++..+++.+++.||+||+++++.+..|+.+||++.|+..||...|.|++|.++
T Consensus 689 llk~LM~~r~~r~qy~pdm~~lq~qmyqLsrl~hd~hrdlyn~le~~ei~pslyAapw~lt~fasQf~lGfvarvfd~~f 768 (948)
T KOG4436|consen 689 LLKFLMFDRGMRKQYRPDMKKLQIQMYQLSRLLHDYHRDLYNHLEENEISPSLYAAPWFLTVFASQFPLGFVARVFDLIF 768 (948)
T ss_pred HHHHHHHHHhhHhhhchHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccChHHhhhHHHHHHHHhhCcchHHHHHHHHHH
Confidence 99999986 4456999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccchhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCC
Q 006827 538 THYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRI 582 (630)
Q Consensus 538 ~~~~~~~f~l~valAIL~~~r~~Il~~~~d~deIlk~ln~l~~~i 582 (630)
..| ..+.+.+++++|..++..|+++. +|++|+.|+++...++
T Consensus 769 lq~--tevifK~a~~llsv~k~~l~e~d-n~e~i~d~~k~~~p~~ 810 (948)
T KOG4436|consen 769 LQG--TEVIFKVALSLLSVHKQLLLEKD-NFEEIVDFLKTTLPKM 810 (948)
T ss_pred hhc--cchhhhhHHHHHHhhHHHHHhhh-hHHHHHHHHHHhhhhh
Confidence 776 67889999999999999999987 9999999999865444
No 16
>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=6.3e-25 Score=234.64 Aligned_cols=262 Identities=25% Similarity=0.366 Sum_probs=202.0
Q ss_pred hhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHhhhcCChHHHh----------------------hhhhhhhc
Q 006827 334 KLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQAR----------------------RFTKFRER 391 (630)
Q Consensus 334 ~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~lk~~~~~~~~~q~~----------------------~~~~~~e~ 391 (630)
..|+..|+.+||+.|.+.+. |..-....+..|.+++....... .+.+ +|-...|.
T Consensus 28 ~~Rgv~Wrl~L~vLp~~~ss--~id~~~~~ra~~r~~r~~~L~dP-h~~k~~~s~d~~idnPLSq~~~S~W~rfF~d~EL 104 (625)
T KOG1091|consen 28 NLRGVRWRLLLGVLPSENSS--WIDNLRRLRANYRRLRRRLLIDP-HNLKENHSPDLPIDNPLSQNPQSVWNRFFRDAEL 104 (625)
T ss_pred hhhhHHHHHhheecCCCchh--HHHHHHHHhhhhhccccccccCc-cccccccCCCcccCCccccCCCchhhhhcCcHHH
Confidence 67999999999999977432 23334555677777654433211 1111 12223466
Q ss_pred cccccccccccCCCC-ccccCCCChhHHHHHHHHHHhhhccCCCccccCcchhHHHHHHhccc-----------------
Q 006827 392 KGLIDKDVVRTDRSV-TFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMED----------------- 453 (630)
Q Consensus 392 ~~~IekDV~RT~~~~-~~f~~~~~~~~~~L~~IL~ay~~~npdiGYvQGM~dL~apLL~v~~d----------------- 453 (630)
...|++||.||||.+ .||+.+. .+..|++||..|+.-||.+||-|||+.++||+++|..-
T Consensus 105 ~~~i~qDvsRtfPe~~~fFqs~~--~q~mLr~iLl~~~lehp~i~YrQGMHElLAPl~fVl~~D~q~l~h~se~~~~~l~ 182 (625)
T KOG1091|consen 105 EKTIDQDVSRTFPEHSLFFQSPE--VQGMLRRILLLYALEHPEIGYRQGMHELLAPLLFVLHVDNQALLHVSESLFDKLG 182 (625)
T ss_pred HHhhcchhhccCcchhhhhcCch--hhHHHHHHHHHHHhhchhhhHHhhhhhhhhhhhhheehhHHHHHHHHHhhhhhcC
Confidence 789999999999999 7787654 46899999999999999999999999999999998732
Q ss_pred -------------hhhHH--HHHHHHHHhhCCCC------------------------CCCcchhhhhHHHHHHHHHhhC
Q 006827 454 -------------ESQSF--WCFVALMERLGPNF------------------------NRDQNGMHSQLFALSKLVELLD 494 (630)
Q Consensus 454 -------------E~~AF--w~f~~lm~~~~~~F------------------------~~d~~gm~~~l~~l~~LL~~~d 494 (630)
+.+++ -.|..+|..-...| ....+.+-.....+..++.+.|
T Consensus 183 f~E~d~iy~~~y~k~d~dn~~lqs~lmls~~~~~e~e~g~~~~e~~ie~day~~~d~l~~~l~~v~e~~~~~~~lL~~~D 262 (625)
T KOG1091|consen 183 FEERDVIYNFLYLKTDLDNTELQSVLMLSDEYGYEEELGIVLSEKLIEHDAYVMFDALMPGLPPVFEANFAQYHLLAKVD 262 (625)
T ss_pred cchhhhhhhHHHHhhhccchhHHHHHHhhhccccccCcceecCcccCCcCcccchhhhcccchhHHHHhhhhhhhhhhcc
Confidence 22223 34555554211111 0111223334456788999999
Q ss_pred hhhhhHHhhcCCCcchhHHHHHHHhcCcCCcHHHHHHHHH-HHHhhccchhHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 006827 495 NPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWE-VLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLK 573 (630)
Q Consensus 495 P~L~~hL~~~~i~~~~f~~rWfltlF~ref~~~~vlrLWD-~~~~~~~~~~f~l~valAIL~~~r~~Il~~~~d~deIlk 573 (630)
+.||.||...++.+.+|..||+..+|.||||+.+++-+|| +++.+++...++-++++|+|...|+.++.. +...-++
T Consensus 263 ~~Lh~HL~~l~i~pqifgiRWlRlLFGREfpL~dLLiVWD~~l~~d~pr~~Lv~~m~VsmLL~IRd~Llss--~~~tcL~ 340 (625)
T KOG1091|consen 263 KSLHSHLVELGIEPQIFGIRWLRLLFGREFPLQDLLIVWDHVLIFDSPRGILVACMFVSMLLYIRDSLLSS--EYQTCLQ 340 (625)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHcchhHHHHHHHHhhhhhhccCchHHHHHHHHHHHHHHHHHHHHHh--cchhHHH
Confidence 9999999999999999999999999999999999999999 888888888899999999999999999965 6666999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHhhccCC
Q 006827 574 FINELSGRIDLDAILRDAEALCICAGENG 602 (630)
Q Consensus 574 ~ln~l~~~id~~~iL~~A~~L~~~~~e~~ 602 (630)
++.++|..+|+++++.+|..+..-++..+
T Consensus 341 ~Lm~yP~~~Dv~~~iekAl~l~~~~~K~n 369 (625)
T KOG1091|consen 341 YLMNYPEIIDVDKFIEKALHLQKLFPKSN 369 (625)
T ss_pred HHhcCCCcCcHHHHHHHHHHHHHhccccc
Confidence 99999999999999999998887555543
No 17
>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms]
Probab=99.89 E-value=6e-23 Score=208.09 Aligned_cols=256 Identities=19% Similarity=0.249 Sum_probs=200.8
Q ss_pred CChHHHHHHHHh-CC-CChhhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHhhhcCChHHHhhhhhhhhcccc
Q 006827 317 MDSNALRKRIFY-GG-VDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGL 394 (630)
Q Consensus 317 ~~~~~Lk~~i~~-~G-Ip~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~lk~~~~~~~~~q~~~~~~~~e~~~~ 394 (630)
.+++.|++.-.. +| +.+++|+.||+.|+|..-..... ..|....+ -....+|
T Consensus 46 ~dv~~Lr~i~l~p~Glv~dslRk~vWp~L~~~~~n~~~~-----------~~~~~~~q---------------~hkd~nQ 99 (395)
T KOG2595|consen 46 KDVDALRYIGLSPGGLVNDSLRKDVWPELLALNINHLDA-----------TSTLTPVQ---------------KHKDYNQ 99 (395)
T ss_pred ccHHHHHHhccCCCccccHHHHHHHHHHHhccccCCCcc-----------cccCChhh---------------hCcccce
Confidence 567788774332 33 47899999999999963222111 11111111 1123479
Q ss_pred ccccccccCCCCcc---ccCCCChhHHHHHHHHHHhhhccCCCccccCcchhHHHHHHhccchhhHHHHHHHHHHhhCCC
Q 006827 395 IDKDVVRTDRSVTF---FDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPN 471 (630)
Q Consensus 395 IekDV~RT~~~~~~---f~~~~~~~~~~L~~IL~ay~~~npdiGYvQGM~dL~apLL~v~~dE~~AFw~f~~lm~~~~~~ 471 (630)
+..||.|++...+. +. .....++.|..++......+|++.|.||.+|||..+|+++. |.+|+-...++-....++
T Consensus 100 V~LDv~RSl~rfppg~p~~-~R~~Lq~qL~~LI~rVl~~yP~L~YYQGyHDI~~tfLLv~g-E~~Al~l~E~L~~~~lrd 177 (395)
T KOG2595|consen 100 VILDVERSLGRFPPGIPKE-LRLQLQKQLTELILRVLRKYPTLNYYQGYHDIVVTFLLVVG-ELEALSLMEELSTLHLRD 177 (395)
T ss_pred EEEehhhhhccCCCCCCHH-HHHHHHHHHHHHHHHHHHHCCCcchhcchhHHHHHHHHhhh-hHhhhHHHHHHHHHHHHH
Confidence 99999999765432 11 11235567777777788899999999999999999999996 999998888777654444
Q ss_pred C-CCCcchhhhhHHHHHHHHHhhChhhhhHHhhcCCCcchhHHHHHHHhcCcCCc-HHHHHHHHHHHHhhccchhHHHHH
Q 006827 472 F-NRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFE-YEKTMRLWEVLWTHYLSEHLHLYV 549 (630)
Q Consensus 472 F-~~d~~gm~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfltlF~ref~-~~~vlrLWD~~~~~~~~~~f~l~v 549 (630)
| .+.+.+...++..+..+|+..+|+||+.|++.++.+ +|+..|++|||++.+. +..|+|++|+|++..+ -..+|+
T Consensus 178 fM~~Tld~t~~qL~~i~~iIk~~nP~Ly~~l~~aevgt-lFaLsWllTWFaH~L~~~~~vvRlfD~Flas~p--l~piyv 254 (395)
T KOG2595|consen 178 FMLPTLDFTVRQLRLISPIIKEVNPELYQFLQSAEVGT-LFALSWLLTWFAHNLKDIRIVVRLFDFFLASHP--LLPIYV 254 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHhhcccc-eehhhHHHHHHhhcchhHHHHHHHHHHHHhcCc--chhHHH
Confidence 3 455677888899999999999999999999999888 5999999999999997 8999999999998764 378899
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhccCCC
Q 006827 550 CVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICAGENGA 603 (630)
Q Consensus 550 alAIL~~~r~~Il~~~~d~deIlk~ln~l~~~id~~~iL~~A~~L~~~~~e~~~ 603 (630)
+.|++...+..|+++..|+.-+..++..+|.++..+++++.+-.++.+.+....
T Consensus 255 ~A~vvL~r~~eIl~~~~dms~~H~lLs~iPq~lp~d~lik~s~~~i~~~~~t~~ 308 (395)
T KOG2595|consen 255 YAAVVLYRRSEILKCDCDMSLLHGLLSTIPQDLPYDTLIKESVLLITRKPATLL 308 (395)
T ss_pred HHHHhhhhHHHHHHHHhhhHHHHHHHHhCccccCHHHHHHHHHHHHhcCChhhh
Confidence 999999999999999888888999999999999999999999888776655543
No 18
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only]
Probab=99.88 E-value=1.1e-22 Score=219.90 Aligned_cols=233 Identities=25% Similarity=0.442 Sum_probs=192.5
Q ss_pred ChHHHHHHHHhCCCChhhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHhhhcCChHHHhhhhhhhhccccccc
Q 006827 318 DSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDK 397 (630)
Q Consensus 318 ~~~~Lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~lk~~~~~~~~~q~~~~~~~~e~~~~Iek 397 (630)
...++.. +...|||.++|+.+|..+++.-- +... .........++....+ ....+| +
T Consensus 134 ~~~~l~~-~~~~gip~~~r~~~W~l~~~~~~--------~~~~---~~~~~l~~~~~~~~~~----------~~~~~~-~ 190 (397)
T KOG1102|consen 134 RPLKLSR-RVLVGIPDELRGLVWQLLLYAVE--------ESLF---DSLDELYRLQLDEPEP----------HESEII-R 190 (397)
T ss_pred cHHHHHH-HhhccccHHHHHHHHHHhcccHh--------hhhh---hhHHHHHHHhhccCCC----------chhHHH-h
Confidence 3455555 45799999999999999998510 0000 0111111111111111 112356 9
Q ss_pred cccccCCCCccccCCCChhHHHHHHHHHHhhhccCCCccccCcchhHHHHHHhccchhhHHHHHHHHHHhhC-CCCCCCc
Q 006827 398 DVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLG-PNFNRDQ 476 (630)
Q Consensus 398 DV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~npdiGYvQGM~dL~apLL~v~~dE~~AFw~f~~lm~~~~-~~F~~d~ 476 (630)
|+.||+|.+..|....+.++..|.+|+.+|+.|++++||||||..++++++.++. |++|||.++.+|.... ..|...+
T Consensus 191 d~~Rt~~~~~~f~~~~~~~q~sl~~vl~a~s~~~~~~gy~q~m~~~a~~ll~~~~-ee~af~~lv~l~~~~~~~~~~~~~ 269 (397)
T KOG1102|consen 191 DLSRTFPAHLLFRKRYGVGQRSLYNVLKAYSLYDPEVGYCQGMSSIAAPLLLYLP-EEEAFPLLVKLMKNYGLDLLSPGF 269 (397)
T ss_pred hccCcCcchhhhhhhcCcccccccccchhhcccCCCcccccchhhHhhhhhccCc-hhhhhhhhhhhhhccchhcccccC
Confidence 9999999999999877888999999999999999999999999999999999996 9999999999999754 3456677
Q ss_pred chhhhhHHHHHHHHHhhChhhhhHHhhcCCCcchhHHHHHHHhcCcCCcHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Q 006827 477 NGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKR 556 (630)
Q Consensus 477 ~gm~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfltlF~ref~~~~vlrLWD~~~~~~~~~~f~l~valAIL~~ 556 (630)
.++...+..+..+++...|.++.|+...++...+|+..|++|+|...++++.+.|+||+++.++ ..+.+.+++|+++.
T Consensus 270 ~~l~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~s~w~~t~f~~k~p~~~~~ri~d~~~~~g--~~i~~~~~~~l~~~ 347 (397)
T KOG1102|consen 270 SGLQRSFRQLQRLLKELIPKLLDHLLPQGIELSMYASQWFLTLFAAKFPLELVLRIWDALFVEG--VSILFRFSLALLKH 347 (397)
T ss_pred CchhhhHHHHHHHHHHhChhhhhhccccccccceeccceeeEeeeccccHHHHHHHhHHHHHhc--hHHHHHHHHHHhhh
Confidence 8999999999999999999999999999999999999999999999999999999999999988 66888999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHhC
Q 006827 557 YRNKIMGEQMDFDTLLKFINEL 578 (630)
Q Consensus 557 ~r~~Il~~~~d~deIlk~ln~l 578 (630)
..+.+. +.+++.+++++.+.
T Consensus 348 ~~~~~~--~~~~e~~~~~l~~~ 367 (397)
T KOG1102|consen 348 KADDLL--DLDFESLLSYLRVD 367 (397)
T ss_pred hhHHHh--hccHHHHHHHHhcc
Confidence 999999 44799999999864
No 19
>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=3.3e-20 Score=177.88 Aligned_cols=190 Identities=21% Similarity=0.390 Sum_probs=157.1
Q ss_pred HHHHHhchhccCCCC--ChHHHHHHHHhCCCChhhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHhhhcCChH
Q 006827 303 SEEWTTFLDNEGRVM--DSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPE 380 (630)
Q Consensus 303 ~~~W~~~l~~~g~~~--~~~~Lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~lk~~~~~~~~~ 380 (630)
+.+|-.++|+|...+ ...+|+.+ ++.|||+.+|+..|.+|.|.+..- .+++..|..+..+ +.
T Consensus 75 eskwL~mldnw~~~m~kk~~~ir~r-crkgippslr~Raw~ylsGa~~~~----------~~np~~~~~~~~~-----pG 138 (267)
T KOG2221|consen 75 ESKWLHMLDNWHEEMRKKQKKIRPR-CRKGIPPSLRGRAWRYLSGAPSPP----------PKNPVVFDELGPA-----PG 138 (267)
T ss_pred HHHHHHHHHHHHHHHHhccccccch-hhcCCCcccchhHHHhhcCCCCCC----------CCCcchhhhccCC-----CC
Confidence 367888888765543 33567776 599999999999999999985321 2234444444322 11
Q ss_pred HHhhhhhhhhccccccccccccCCCCccccCCCChhHHHHHHHHHHhhhccCCCccccCcchhHHHHHHhccchhhHHHH
Q 006827 381 QARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWC 460 (630)
Q Consensus 381 q~~~~~~~~e~~~~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~npdiGYvQGM~dL~apLL~v~~dE~~AFw~ 460 (630)
. -...+-|.+|++|-||++..|......+...|.|+|.+|..|+|+.||||+-.-|++.++..|. +.+||||
T Consensus 139 ~-------p~t~e~i~kdl~rqfp~hemf~s~~k~gkqelfr~lka~ti~~pe~g~cq~qapiaa~llmhmp-~rdaf~~ 210 (267)
T KOG2221|consen 139 D-------PKTAEGIHKDLHRQFPFHEMFGSSGKTGKQELFRVLKAYTIYKPEEGYCQAQAPIAAVLLMHMP-ARDAFWC 210 (267)
T ss_pred C-------CcchhhhccccccCCCcccccccccccchHHHHHHHHHHHHhCchhhhhhhhchHHHHHHhccc-HHHHHHH
Confidence 1 0123579999999999999999888888999999999999999999999999999999999996 8899999
Q ss_pred HHHHHHhhCCC-CCCCcchhhhhHHHHHHHHHhhChhhhhHHhhcCCCcchhHHHHH
Q 006827 461 FVALMERLGPN-FNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWV 516 (630)
Q Consensus 461 f~~lm~~~~~~-F~~d~~gm~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWf 516 (630)
|+++.+++.+. |......++..-.+|..|+++.+|..|.||....+++..|...||
T Consensus 211 ~vqicekylqgy~~sgleaiq~dg~il~~Llkk~~~p~~rH~~~~kvdp~lym~ewF 267 (267)
T KOG2221|consen 211 FVQICEKYLQGYYSSGLEAIQNDGGILEGLLKKASPPPYRHLGGDKVDPLLYMTEWF 267 (267)
T ss_pred HHHHHHHHcccccccchhhhhcccHHHHHHHHhcCCCCCcccccCCCCHHHhhhccC
Confidence 99999998876 556678888888999999999999999999999999999999997
No 20
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=99.60 E-value=1.1e-14 Score=152.08 Aligned_cols=202 Identities=18% Similarity=0.291 Sum_probs=155.8
Q ss_pred cccccccccCCCCccccCCCChhHHHHHHHHHHhhhccCCCcccc--CcchhHHHHHHhccchhhHHHHHHHHHHhhCCC
Q 006827 394 LIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQ--GMSDLLSPILFVMEDESQSFWCFVALMERLGPN 471 (630)
Q Consensus 394 ~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~npdiGYvQ--GM~dL~apLL~v~~dE~~AFw~f~~lm~~~~~~ 471 (630)
+|.+|+.|-.-...--..+..+.+..|..++.-||. +.++-|.. |-..|+-||+.+--+-.+.|-||-.+|+++.+.
T Consensus 69 ~lr~DC~~~~d~l~n~ee~~v~vv~dlES~iTfYCK-~Rn~~Y~~d~gWi~lL~pl~~L~lprsd~fN~F~ai~~kYIPk 147 (669)
T KOG3636|consen 69 ALRNDCRKLADGLKNKEEDKVPVVSDLESFITFYCK-KRNMDYIKDIGWITLLEPLLLLNLPRSDEFNVFFAITTKYIPK 147 (669)
T ss_pred HHHHHHHHHHhhcCCchhhccchhHhhhhHhhhhhh-ccCCcccccccHHHHHHHHHHhcCCcchhhhhhHhhhhcccCC
Confidence 566666665433333333345566788899888875 34566664 444678888888777899999999999998763
Q ss_pred CCCCcchhhhhHHHHHHHHHhhChhhhhHHhhcCCCcchhHHHHHHHhcCcCCcHHHHHHHHHHHHhhccchhHHHHHHH
Q 006827 472 FNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCV 551 (630)
Q Consensus 472 F~~d~~gm~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfltlF~ref~~~~vlrLWD~~~~~~~~~~f~l~val 551 (630)
= ...-..-+..|+-||+.++|+|+.||+...+++.+|+..||-++|+...+.+.+..+||.++.... +-+++|+++
T Consensus 148 d---crpkg~~Fh~FRLLlqYHdPelc~~LdtkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqaD-PF~vffLal 223 (669)
T KOG3636|consen 148 D---CRPKGQIFHLFRLLLQYHDPELCNHLDTKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQAD-PFLVFFLAL 223 (669)
T ss_pred C---CCCCCccchHHHHHHHhcCHHHhhhhhccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-ceehHHHHH
Confidence 2 222224456799999999999999999999999999999999999999999999999999997664 346778899
Q ss_pred HHHHHHHHHHhcCCCC-HHHHHHHHHhCCCCC---CHHHHHHHHHHHHHhhcc
Q 006827 552 AILKRYRNKIMGEQMD-FDTLLKFINELSGRI---DLDAILRDAEALCICAGE 600 (630)
Q Consensus 552 AIL~~~r~~Il~~~~d-~deIlk~ln~l~~~i---d~~~iL~~A~~L~~~~~e 600 (630)
-||...++.|++...+ -+|++||+.++|..+ |+.++...|.......++
T Consensus 224 iiLiNake~ILq~~sdsKEe~ikfLenmp~~L~~eDvpDffsLAqyY~~KTP~ 276 (669)
T KOG3636|consen 224 IILINAKEEILQVKSDSKEEAIKFLENMPAQLSVEDVPDFFSLAQYYSDKTPE 276 (669)
T ss_pred HHhcccHHHHhhhccccHHHHHHHHHcCchhcccccchhHHHHHHHHhhcChH
Confidence 9999999999976544 579999999999776 566777878765544433
No 21
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=99.50 E-value=8.6e-14 Score=154.44 Aligned_cols=246 Identities=17% Similarity=0.264 Sum_probs=197.7
Q ss_pred HHHHhchhccCCCCChHHHHHHHHhCCCChhhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHhhhcCChHHHh
Q 006827 304 EEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQAR 383 (630)
Q Consensus 304 ~~W~~~l~~~g~~~~~~~Lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~lk~~~~~~~~~q~~ 383 (630)
+.|+.. +.....+|+.+ +.+|+|+..|-.+|..|+..... ++ ....+.|++++.. +..+++
T Consensus 164 ~~~E~~-----r~~s~~~l~e~-Ve~~~p~~frli~~qlLssatd~-------~q--~~I~e~~sdl~~~----s~~~Ek 224 (948)
T KOG4436|consen 164 DLWERC-----RKKSLHKLKEL-VEGGIPMHFRLIRWQLLSSATDR-------EQ--ALIFEDYSDLAPC----SSQQEK 224 (948)
T ss_pred hhhhhh-----hhhchhhhHHH-HhcCCchHHHHHHHHHhcccccc-------hh--hHHHHHHHHHhhh----cchhhh
Confidence 466653 33456778885 49999999999999999986321 11 1235667666643 222222
Q ss_pred hhhhhhhccccccccccccCCCCccccCCCCh-------hHHHHHHHHHHhhhccCCCccccCcchhHHHHHHhccchhh
Q 006827 384 RFTKFRERKGLIDKDVVRTDRSVTFFDGDDNP-------NVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQ 456 (630)
Q Consensus 384 ~~~~~~e~~~~IekDV~RT~~~~~~f~~~~~~-------~~~~L~~IL~ay~~~npdiGYvQGM~dL~apLL~v~~dE~~ 456 (630)
. .....|..|+.||.+.+.+|.+.... +++.|+|+..+|.....+.|||||-+.+++.++..+. ++.
T Consensus 225 ~-----~~~~~Irrdi~~~~~eh~~fke~~s~~~~~~~~~~d~LfN~~K~~~~~~~E~ifsqGs~~m~Gll~l~~~-~E~ 298 (948)
T KOG4436|consen 225 E-----LHIGIIRRDIERTYPEHYFFKEQSSTVCSDIRFAQDQLFNVAKAYSTKDLEVIFSQGSAFMVGLLLLQMP-VEE 298 (948)
T ss_pred h-----HHHHHHHHHhhccCcceeeeccCccCCcchhHHHHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHhcCc-HHH
Confidence 1 23457999999999999999987655 6899999999999999999999999999999999995 899
Q ss_pred HHHHHHHHHHhh--CCCCCCCcchhhhhHHHHHHHHHhhCh-hhhhHHhhcCCCcchhHHHHHHHhcCcCCcHHHHHHHH
Q 006827 457 SFWCFVALMERL--GPNFNRDQNGMHSQLFALSKLVELLDN-PLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLW 533 (630)
Q Consensus 457 AFw~f~~lm~~~--~~~F~~d~~gm~~~l~~l~~LL~~~dP-~L~~hL~~~~i~~~~f~~rWfltlF~ref~~~~vlrLW 533 (630)
+|..++.+|..+ ..-|.+.+..+-..+..++...+-..| .|+.|+.+.++....+.-.||++.|...||....-|+.
T Consensus 299 assv~~~lm~~~rl~~l~kpe~~~l~~~~~q~e~~~q~~sp~dl~sH~~eq~~h~S~~~rs~flt~~ltt~Pi~~a~r~~ 378 (948)
T KOG4436|consen 299 ASSVKVQLMILYRLRELSKPEMEPLGLCMFQLECTNQDQSPMDLFSHFPEQHFHTSMYARSWFLTNFLTTFPIFMAARIS 378 (948)
T ss_pred HHHHHHHHHHhhcccccCCcccchhHHHHHhhcccccccchhHHhhcccccCCCccHHHHHHHHHhhcccCchhhccccc
Confidence 999999999865 455778788888888899999999999 99999999999999999999999999999999999999
Q ss_pred HHHHhhccchhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHh
Q 006827 534 EVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINE 577 (630)
Q Consensus 534 D~~~~~~~~~~f~l~valAIL~~~r~~Il~~~~d~deIlk~ln~ 577 (630)
|++..++ ..+.+++.+|++...++.=+. ..|++..+++++.
T Consensus 379 ~~f~~eg--llk~fr~~ia~~~~~~d~~~~-s~D~EG~~~~~qr 419 (948)
T KOG4436|consen 379 DTFSSEG--LLKRFRDSIAYLHQLRDIELE-SLDMEGMLSYFQR 419 (948)
T ss_pred ccccccc--HHHHHhhhHHHHHHHhhhhhh-ccCccccccchhh
Confidence 9998665 456669999999444443333 4499999998863
No 22
>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=2.1e-08 Score=100.73 Aligned_cols=253 Identities=18% Similarity=0.226 Sum_probs=172.2
Q ss_pred ChHHHHHHHHhCCC---ChhhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHhhhcCChHHHhhhhhhhhcccc
Q 006827 318 DSNALRKRIFYGGV---DHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGL 394 (630)
Q Consensus 318 ~~~~Lk~~i~~~GI---p~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~lk~~~~~~~~~q~~~~~~~~e~~~~ 394 (630)
...+||+ +.+.|. .+.+|+.|+..|..-.|...-. .....|.++..+....-... .-.+-|
T Consensus 31 elqelkq-larqgywaqshalrgkvyqrlirdipcrtvt--------pdasvysdivgkivgkhsss---clplpe---- 94 (559)
T KOG2801|consen 31 ELQELKQ-LARQGYWAQSHALRGKVYQRLIRDIPCRTVT--------PDASVYSDIVGKIVGKHSSS---CLPLPE---- 94 (559)
T ss_pred hHHHHHH-HHhcchHHhhhhhhhHHHHHHHhcCCccccC--------CchhHHHHHHHHHhccCCcc---cccchh----
Confidence 4567777 557776 6789999999999876643211 11345666665432210000 000000
Q ss_pred cccccccc-CCCCccccCCCChhHHHHHHHHHHhhhccCCCccccCcchhHHHHHHhccchhhHHHHHHHHHHhhCCC-C
Q 006827 395 IDKDVVRT-DRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPN-F 472 (630)
Q Consensus 395 IekDV~RT-~~~~~~f~~~~~~~~~~L~~IL~ay~~~npdiGYvQGM~dL~apLL~v~~dE~~AFw~f~~lm~~~~~~-F 472 (630)
=|..| .|.+.+ +..+....+.||.+.+..-|+|.+|..+..+++.+|...-||+++|---++++..-.+. =
T Consensus 95 ---fvdntqvpsycl----nargegavrkilKOGanqfpdisfcpalpavvalllhysideaecfekacrilacndpgrr 167 (559)
T KOG2801|consen 95 ---FVDNTQVPSYCL----NARGEGAVRKILLCLANQFPDISFCPALPAVVALLLHYSIDEAECFEKACRILACNDPGRR 167 (559)
T ss_pred ---hcccCcCchhhh----cCcCchhHHHHHHHHhccCCCcccCcchHHHHHHHHHhcccHHHHHHHhheeeeecCcchh
Confidence 00111 111111 12244678999999999999999999999999999999889999887766666432221 0
Q ss_pred CCCc--chhhhhHHHHHHHHHhhChhhhhHHhhcCCCcchhHHHHHHHhcCcCCcHHHHHHHHHHHHhhccchhHHHHHH
Q 006827 473 NRDQ--NGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVC 550 (630)
Q Consensus 473 ~~d~--~gm~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfltlF~ref~~~~vlrLWD~~~~~~~~~~f~l~va 550 (630)
.-|+ -.....+.+|..|+.++.-.-++.+....-+.....-.|-..+| .++|+-...|++|+|+.+| .+.+++++
T Consensus 168 lidqsflafesscmtfgdlvnkycqaahklmvavsedvlqvyadwqrwlf-gelplcyfarvfdvflveg--ykvlyrva 244 (559)
T KOG2801|consen 168 LIDQSFLAFESSCMTFGDLVNKYCQAAHKLMVAVSEDVLQVYADWQRWLF-GELPLCYFARVFDVFLVEG--YKVLYRVA 244 (559)
T ss_pred hhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHh-ccchHHHHHHHhhheeecc--hHHHHHHH
Confidence 1122 24456667888999988888877776654455555567876666 4699999999999999887 57899999
Q ss_pred HHHHHHHHHHHhcCCCC----HHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 006827 551 VAILKRYRNKIMGEQMD----FDTLLKFINELSGRIDLDAILRDAEALCI 596 (630)
Q Consensus 551 lAIL~~~r~~Il~~~~d----~deIlk~ln~l~~~id~~~iL~~A~~L~~ 596 (630)
+|||+...+.--.+-.+ -.+|-.|++++..+...++++.+|.++..
T Consensus 245 lailkffhkvragqplesdsvkqdirtfvrdiaktvspekllekafairl 294 (559)
T KOG2801|consen 245 LAILKFFHKVRAGQPLESDSVKQDIRTFVRDIAKTVSPEKLLEKAFAIRL 294 (559)
T ss_pred HHHHHHHHHhhcCCCCccchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 99999988765443323 34788899999989999999999987743
No 23
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]
Probab=97.63 E-value=4.5e-05 Score=85.13 Aligned_cols=84 Identities=36% Similarity=0.638 Sum_probs=74.7
Q ss_pred CCCCCCCCHHHHHhchhccCCCCChHHHHHHHHhCCCChhhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHhh
Q 006827 295 KPRQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQW 374 (630)
Q Consensus 295 ~~r~~pl~~~~W~~~l~~~g~~~~~~~Lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~lk~~~ 374 (630)
..+..+++.++|+..|+++|+..+..++.+++..+||++.+|+++|.+|+|+|+.+++.++|..+....+..|.++..+.
T Consensus 42 ~~~~~~l~~~~~~~~f~~~~~~~~~~~~l~~i~~~gi~psir~evw~fll~~y~~~~~~~~~~~~r~~~~~~~~~l~~~c 121 (488)
T KOG2197|consen 42 IKPGKTLKPEKWQANFDPDGRLSGFVKLLKLIILGGIDPSIRGEVWEFLLGCYDLDSTFEERNQLRVARRPQYNELLLVC 121 (488)
T ss_pred eccccccchhhhhhccCCCccccchhhhheeeecCCCCCcccchhHHHHhcccCCCCchHHHHHHHhhcccchHHHHHHc
Confidence 35667788899999999999997666666778899999999999999999999999999999999999999999999887
Q ss_pred hcCC
Q 006827 375 QSIS 378 (630)
Q Consensus 375 ~~~~ 378 (630)
..+.
T Consensus 122 ~~~~ 125 (488)
T KOG2197|consen 122 QMMK 125 (488)
T ss_pred chhh
Confidence 6543
No 24
>PF14961 BROMI: Broad-minded protein
Probab=96.56 E-value=0.019 Score=68.75 Aligned_cols=156 Identities=18% Similarity=0.300 Sum_probs=110.4
Q ss_pred HHHHHHHhhhccCCCccccCcchhHHHHHHhcc-chhhHHHHHHHHHHhhCCC--------C---CCC---cchhhh---
Q 006827 420 LRDILLTYSFYNFDLGYCQGMSDLLSPILFVME-DESQSFWCFVALMERLGPN--------F---NRD---QNGMHS--- 481 (630)
Q Consensus 420 L~~IL~ay~~~npdiGYvQGM~dL~apLL~v~~-dE~~AFw~f~~lm~~~~~~--------F---~~d---~~gm~~--- 481 (630)
-..|+..|..++..-+| .|-...++.++++|. |-+.+.-.+.+|-..+... . .+. .+|++-
T Consensus 1086 ~l~~~~~~~~~~~~~~y-~g~DWFvstvfli~~Gd~e~~~~fL~~fS~ll~SaflW~pRlh~s~~l~~~~~~s~i~p~~~ 1164 (1296)
T PF14961_consen 1086 SLHILFEFIHFCLQGSY-PGHDWFVSTVFLIMLGDKERSLQFLQRFSRLLTSAFLWPPRLHASIHLPVDTAESGIHPVYF 1164 (1296)
T ss_pred hhHHHhhhhcccCCCCC-CCchhHHHHHHHHHcCChhHhHHHHHHHHHHHHHhHhccccccccccCCchhhhcCCCchhh
Confidence 33455555555555555 477878888777774 3334443333333322111 1 111 144442
Q ss_pred -hHHHHHHHHHhhChhhhhHHhhcCCCcchhHHHHHHHhcCcCCcHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHH
Q 006827 482 -QLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRNK 560 (630)
Q Consensus 482 -~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfltlF~ref~~~~vlrLWD~~~~~~~~~~f~l~valAIL~~~r~~ 560 (630)
.+..++.+|+...|.+|.-|...|.++...|.+|+--+|=..++|..++.--=+.+..| ..|.+|+|+|||+..++.
T Consensus 1165 ~~~~~vE~ll~~E~P~V~saf~~sg~tpsqi~~rW~~QcFWnyldW~eI~~y~~~cil~G--~dyqvY~~VailkHlq~~ 1242 (1296)
T PF14961_consen 1165 CSCHYVEMLLKAELPLVFSAFRMSGFTPSQICQRWLSQCFWNYLDWPEICHYIAICILYG--PDYQVYICVAILKHLQPE 1242 (1296)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHcCCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhcC--ccceeehhHHHHHHhhHH
Confidence 34568999999999999999999999999999999999999999999887665555444 679999999999999999
Q ss_pred HhcCCCCHHHHHHHHHhCC
Q 006827 561 IMGEQMDFDTLLKFINELS 579 (630)
Q Consensus 561 Il~~~~d~deIlk~ln~l~ 579 (630)
|++.. .-.++.-|+++-+
T Consensus 1243 ilq~~-q~q~L~~flke~~ 1260 (1296)
T PF14961_consen 1243 ILQHT-QTQDLQVFLKEEA 1260 (1296)
T ss_pred HHHhh-hhchHHHHhhhcc
Confidence 99765 4456777887754
No 25
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=93.75 E-value=0.022 Score=60.84 Aligned_cols=34 Identities=59% Similarity=1.096 Sum_probs=31.7
Q ss_pred CccccCcchhHHHHHHhccchhhHHHHHHHHHHh
Q 006827 434 LGYCQGMSDLLSPILFVMEDESQSFWCFVALMER 467 (630)
Q Consensus 434 iGYvQGM~dL~apLL~v~~dE~~AFw~f~~lm~~ 467 (630)
+|..|||+|++||+|.-..||.++||||+++|..
T Consensus 566 vglmqgmsdlvapilaevldesdtfwcfvglmqn 599 (781)
T KOG2224|consen 566 VGLMQGMSDLVAPILAEVLDESDTFWCFVGLMQN 599 (781)
T ss_pred hhhhccchhhhhhHHHhhhccccchhhhhhhhcc
Confidence 5888999999999999888999999999999984
No 26
>PF08567 TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal domain; InterPro: IPR013876 The N-terminal region of the TFIIH basal transcription factor complex p62 subunit (BTF2-p62) forms an interaction with the 3' endonuclease XPG, which is essential for activity. The 3' endonuclease XPG is a major component of the nucleotide excision repair machinery. The structure of the N-terminal region reveals that it adopts a pleckstrin homology (PH) fold [, ]. ; PDB: 1Y5O_A 2LOX_A 2GS0_A 2L2I_A 2K2U_A 1PFJ_A 2RNR_B.
Probab=58.15 E-value=52 Score=27.56 Aligned_cols=65 Identities=14% Similarity=0.299 Sum_probs=42.0
Q ss_pred CCccEEEEeeCCceEEEeEecCCCCCCccccccccCcceeeeeeCCceeEEEecCCCCCceEEEEEeCCCC--CCCCeee
Q 006827 64 ISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLSSGL--AFPPLYF 141 (630)
Q Consensus 64 I~G~L~l~~~~~~~~l~W~P~~~~~~~~~~~~~~~~~y~~~~v~ls~i~si~~~~p~~G~~~~vl~~~dG~--~~PpL~F 141 (630)
.+|.|.|.+. .-.+.|+|+.... .. ..+|++.+|..+++.|++..=-=+-|+.+++. .--.++|
T Consensus 12 ~~G~L~l~~d--~~~~~W~~~~~~~----------~~--~v~i~~~~I~~lq~Sp~~s~Kv~Lki~~~~~~~~~~~~f~F 77 (79)
T PF08567_consen 12 KDGTLTLTED--RKPLEWTPKASDG----------PS--TVSIPLNDIKNLQQSPEGSPKVMLKIVLKDDSSEESKTFVF 77 (79)
T ss_dssp EEEEEEEETT--CSSEEEEECCSSS----------SS--EEEEETTTEEEEEE--TTSSTEEEEEEETTSC---CCCEEE
T ss_pred CCcEEEEecC--CceEEEeecCCCC----------Cc--eEEEEHHHhhhhccCCCCCcceEEEEEEecCCcccceEEEE
Confidence 4599988744 2348888864332 11 26799999999999999665444678888773 3456666
Q ss_pred c
Q 006827 142 Y 142 (630)
Q Consensus 142 h 142 (630)
+
T Consensus 78 ~ 78 (79)
T PF08567_consen 78 T 78 (79)
T ss_dssp -
T ss_pred e
Confidence 5
No 27
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only]
Probab=50.44 E-value=4.6 Score=44.44 Aligned_cols=115 Identities=17% Similarity=0.154 Sum_probs=75.7
Q ss_pred cccccccccCCCCccccCCCChhHHHHHHHHHHhhhccCCCccccCcchhHHHHHHhccchhhHHHHHHHHHHhhCCCCC
Q 006827 394 LIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNFN 473 (630)
Q Consensus 394 ~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~npdiGYvQGM~dL~apLL~v~~dE~~AFw~f~~lm~~~~~~F~ 473 (630)
.|..|++.|.+ +.......... |.+|..+|+++||| +..+.+ .+...+.
T Consensus 2 ~~~~~~~~~~~----~~~~~~~~~~~----l~~~~~~~~~~~~~--~~~~~~---------------------~~~~~~~ 50 (397)
T KOG1102|consen 2 EIDSPVRLTFR----LRPRYGQKQNN----LAAYEPYNPEVGYC--VLHITS---------------------KSDGFQS 50 (397)
T ss_pred CCCcccccccc----CCCCccccccc----ccCCCccccccccc--hhhhhh---------------------ccccccc
Confidence 46778888876 22211111111 88999999999999 666655 1211222
Q ss_pred CCcchhhhhHHHHHHHHHhhChhhhhHHhhcCCCcchhHHHHHHHhcCcCCcHHHHHHHHHHHHhhc
Q 006827 474 RDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHY 540 (630)
Q Consensus 474 ~d~~gm~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfltlF~ref~~~~vlrLWD~~~~~~ 540 (630)
.+...................+.-..|+...+ .....+..|..-.|..........++||.+..++
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (397)
T KOG1102|consen 51 SNERKLTELRDSPESIPDLSQSKRPGHVDSSE-PTNELYPKSDERIFKDKPLLSLTLDLWDVKLLEG 116 (397)
T ss_pred CCcccccccccCcccccccccccccccccccc-cccccccccccccccccccccccchhHHHHhhhh
Confidence 22222222222344445566677788888888 7778888999999999989999999999998765
No 28
>PF14472 DUF4429: Domain of unknown function (DUF4429)
Probab=46.55 E-value=18 Score=31.36 Aligned_cols=31 Identities=19% Similarity=0.529 Sum_probs=27.0
Q ss_pred eeeeCCceeEEEecCCC-CCceEEEEEeCCCC
Q 006827 104 RAVPFTEVRSIRRHTPA-FGWQYIIVVLSSGL 134 (630)
Q Consensus 104 ~~v~ls~i~si~~~~p~-~G~~~~vl~~~dG~ 134 (630)
..|||++|..|..++|. .+..||.|++++|.
T Consensus 27 ~~ipl~~i~gV~~~~pg~~~~G~Lrf~~~~g~ 58 (94)
T PF14472_consen 27 KTIPLSAISGVEWKPPGGLTNGYLRFVLRGGA 58 (94)
T ss_pred EEEEHHHcceEEEEcCCceeEEEEEEEECCcC
Confidence 56999999999999995 77888999998755
No 29
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=27.40 E-value=98 Score=32.58 Aligned_cols=61 Identities=8% Similarity=0.085 Sum_probs=41.4
Q ss_pred hhhhHHhhcCCCcchhHHHHHHHhcCcCCc----HHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Q 006827 496 PLHNYFKQNDCLNYFFCFRWVLIQFKREFE----YEKTMRLWEVLWTHYLSEHLHLYVCVAILKR 556 (630)
Q Consensus 496 ~L~~hL~~~~i~~~~f~~rWfltlF~ref~----~~~vlrLWD~~~~~~~~~~f~l~valAIL~~ 556 (630)
.+|.||+++--.-.+-.|+||-.|...|+. |..++|-|--++.+..+.-..=|+++|+...
T Consensus 161 tIyRHLe~~Pe~r~~PIF~~Fe~WCqDEnRHGd~F~~lmrsqP~ll~~~~~kLW~RFFLlsVfaT 225 (323)
T cd01047 161 TIYRHLERNPENQFHPIFKYFENWCQDENRHGDFFAALLRAQPHLLNDGKNKLWIRFFLLSVYAT 225 (323)
T ss_pred HHHHHHHhCcccccchHHHHHHHHhcccchhhHHHHHHHhcChhhhhhHHHHHHHHHHHHHHHHh
Confidence 467888887555566789999999999997 5666777777765433333334556666543
No 30
>PF07024 ImpE: ImpE protein; InterPro: IPR009211 This entry contains proteins of unknown function that occur in bacteria that interact with and manipulate eukaryotic cells []. Salmonella enterica protein SciE is encoded in the centisome 7 genomic island (SCI) []. Deletion of the entire island affects the ability of bacteria to enter eukaryotic cells []. Therefore, SciE and other SCI proteins may be involved in virulence. Interestingly, another member of this family, Rhizobium leguminosarum protein ImpE, has been reported to be encoded by an avirulence locus involved in temperature-dependent protein secretion []. It is believed that the imp locus is involved in the secretion to the environment of proteins, including periplasmic RbsB protein, that cause blocking of R. leguminosarum infection in plants [].; PDB: 1ZBP_A.
Probab=27.16 E-value=45 Score=30.51 Aligned_cols=35 Identities=31% Similarity=0.638 Sum_probs=24.2
Q ss_pred eeCCceeEEEecCCC----CCceEEEEEeCCCCC----CCCee
Q 006827 106 VPFTEVRSIRRHTPA----FGWQYIIVVLSSGLA----FPPLY 140 (630)
Q Consensus 106 v~ls~i~si~~~~p~----~G~~~~vl~~~dG~~----~PpL~ 140 (630)
||+++|.||++.+|. +=|.-..|.++||.. +|+.|
T Consensus 30 vPf~~I~~l~~~~p~~l~DlvWrpa~i~l~dG~~~~~~iP~rY 72 (123)
T PF07024_consen 30 VPFSRIASLEFEPPASLRDLVWRPAEITLRDGGEGEGFIPARY 72 (123)
T ss_dssp EEGGGEEEEEE----SSGGGTEEEEEEEETTTEEEEEEEE-B-
T ss_pred EEHHHccceecCCCCCHHHhcccceEEEEeCCCeEEEEEeccc
Confidence 999999999999993 358878899999865 56655
No 31
>PF08109 Antimicrobial14: Lactocin 705 family; InterPro: IPR012517 This family consists of lactocin 705 which is a bacteriocin produced by Lactobacillus casei CRL 705. Lactocin 705 is a class IIb bacteriocin, whose activity depends upon the complementation of two peptides (705-alpha and 705-beta) of 33 amino acid residues each. Lactocin 705 is active against several Gram-positive bacteria, including food-borne pathogens and is a good candidate to be used for biopreservation of fermented meats [].
Probab=26.36 E-value=39 Score=22.15 Aligned_cols=16 Identities=44% Similarity=0.746 Sum_probs=12.2
Q ss_pred CccccCcchhHHHHHH
Q 006827 434 LGYCQGMSDLLSPILF 449 (630)
Q Consensus 434 iGYvQGM~dL~apLL~ 449 (630)
-||.||+.|.+--.|.
T Consensus 3 sgyiqgipdflkgylh 18 (31)
T PF08109_consen 3 SGYIQGIPDFLKGYLH 18 (31)
T ss_pred cccccccHHHHHHHHh
Confidence 4899999988766553
No 32
>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C.
Probab=25.16 E-value=54 Score=28.56 Aligned_cols=93 Identities=16% Similarity=0.251 Sum_probs=49.8
Q ss_pred EEEeeCCeEEccCccccCCCCccEEEEeeCCceEEEeEecCCCCCCcccccc---ccCcceeeeeeCCceeEEEecCCCC
Q 006827 45 LVYLKDNVTIHPTQFASERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEK---DRNLYTIRAVPFTEVRSIRRHTPAF 121 (630)
Q Consensus 45 Llf~Ks~V~vhPt~~~~d~I~G~L~l~~~~~~~~l~W~P~~~~~~~~~~~~~---~~~~y~~~~v~ls~i~si~~~~p~~ 121 (630)
++|.-+-..|.| +..++|.|.|.+. .|-+.|+............ ..........|+++|..|+.|.--+
T Consensus 2 i~~s~~c~~I~~----~~~~~G~l~i~~~----~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~I~~v~~RRyll 73 (106)
T PF14844_consen 2 ILLSVPCELITP----LDSIPGTLIITKS----SIYFIPNDNSSENKISSENPSISISKPKSKRWPLSDIKEVHKRRYLL 73 (106)
T ss_dssp -SEEEEEEEEET----TEEEEEEEEE-SS----EEEEEE--TTSHHHHCS-HHHHCC---TCEEEEGGGEEEEEEEEETT
T ss_pred EEEEEEEEEEEe----eeeEEEEEEEeCC----EEEEEECCcccccccccccccccccCCceEEEEHHHhHHHHHHHhcC
Confidence 455555566666 5669999999865 4667776111110000000 0111123468999999999887655
Q ss_pred CceEEEEEeCCCCCCCCeeecCCCh
Q 006827 122 GWQYIIVVLSSGLAFPPLYFYTGGV 146 (630)
Q Consensus 122 G~~~~vl~~~dG~~~PpL~Fh~GG~ 146 (630)
-..=+-|...||.++= |-|.+.+.
T Consensus 74 r~~AlEiF~~dg~s~f-~~F~~~~~ 97 (106)
T PF14844_consen 74 RDTALEIFFSDGRSYF-FNFESKKE 97 (106)
T ss_dssp EEEEEEEEETTS-EEE-EE-SSHHH
T ss_pred cceEEEEEEcCCcEEE-EEcCCHHH
Confidence 4444778889998521 33444444
No 33
>PF13142 DUF3960: Domain of unknown function (DUF3960)
Probab=24.94 E-value=51 Score=27.48 Aligned_cols=29 Identities=14% Similarity=0.321 Sum_probs=24.8
Q ss_pred cEEEEeeCCeEEccCccccCCCCccEEEEe
Q 006827 43 AELVYLKDNVTIHPTQFASERISGRLKLIK 72 (630)
Q Consensus 43 ~~Llf~Ks~V~vhPt~~~~d~I~G~L~l~~ 72 (630)
+.++|+++++|=-| ....|-||.-++|+.
T Consensus 58 ~~i~Ygm~~~~~lp-~y~~dE~~tl~ri~r 86 (87)
T PF13142_consen 58 PFILYGMKKGYQLP-QYDKDEIPTLVRIVR 86 (87)
T ss_pred eeEEeeccccccCc-ccccccchhhhheee
Confidence 47999999999888 677888999988864
No 34
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=24.10 E-value=1.2e+02 Score=32.02 Aligned_cols=61 Identities=10% Similarity=0.189 Sum_probs=39.6
Q ss_pred hhhhHHhhcCCCcchhHHHHHHHhcCcCCc----HHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Q 006827 496 PLHNYFKQNDCLNYFFCFRWVLIQFKREFE----YEKTMRLWEVLWTHYLSEHLHLYVCVAILKR 556 (630)
Q Consensus 496 ~L~~hL~~~~i~~~~f~~rWfltlF~ref~----~~~vlrLWD~~~~~~~~~~f~l~valAIL~~ 556 (630)
.+|.||+++--.-.+-.|+||-.|...|+. |..++|-+--++.+.-+.-..=|+++|+...
T Consensus 171 tIyRHLe~~Pe~r~~PIF~~Fe~WCqDEnRHGd~F~~lmrsqP~ll~g~~~kLW~RFFLLsVfaT 235 (337)
T TIGR02029 171 TIYRHLEENPENQFYPIFKYFESWCQDENRHGDAFAALMRSQPQLLNNWKAKLWSRFFLLSVYST 235 (337)
T ss_pred HHHHHHHhCcccccchHHHHHHHHhcccchhHHHHHHHHhcChhhhhhHHHHHHHHHHHHHHHHH
Confidence 467888887555566789999999999997 5556666666664322222333455555543
No 35
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=22.41 E-value=1.4e+02 Score=31.93 Aligned_cols=60 Identities=7% Similarity=0.133 Sum_probs=38.9
Q ss_pred hhhhHHhhcCCCcchhHHHHHHHhcCcCCc----HHHHHHHHHHHHhhccchhHHHHHHHHHHH
Q 006827 496 PLHNYFKQNDCLNYFFCFRWVLIQFKREFE----YEKTMRLWEVLWTHYLSEHLHLYVCVAILK 555 (630)
Q Consensus 496 ~L~~hL~~~~i~~~~f~~rWfltlF~ref~----~~~vlrLWD~~~~~~~~~~f~l~valAIL~ 555 (630)
.+|.||+++--.-.+-.|+||-.|...|+. |..++|-+--++.+..+.-..=|+++|+..
T Consensus 177 tIyRHLe~~Pe~r~~PIF~~FE~WCqDEnRHGdfF~almraqP~ll~g~~~kLW~RFFLlsVfa 240 (351)
T CHL00185 177 TIYRHLEKNPEYRIYPIFKFFESWCQDENRHGDFFAALLKSQPHLLNGWKARLWCRFFLLSVFA 240 (351)
T ss_pred HHHHHHHhCcccccchHHHHHHHHhcccchhHHHHHHHHhcChhhhhhHHHHHHHHHHHHHHHH
Confidence 467888888655666789999999999997 555666666666431222233345555554
No 36
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=21.79 E-value=1.4e+02 Score=31.79 Aligned_cols=60 Identities=7% Similarity=0.199 Sum_probs=38.2
Q ss_pred hhhhHHhhcCCCcchhHHHHHHHhcCcCCc----HHHHHHHHHHHHhhccchhHHHHHHHHHHH
Q 006827 496 PLHNYFKQNDCLNYFFCFRWVLIQFKREFE----YEKTMRLWEVLWTHYLSEHLHLYVCVAILK 555 (630)
Q Consensus 496 ~L~~hL~~~~i~~~~f~~rWfltlF~ref~----~~~vlrLWD~~~~~~~~~~f~l~valAIL~ 555 (630)
.+|.||+++-=.-.+-.|+||-.|...|+. |..++|-+--++.+.-+.-..=|+++|+..
T Consensus 177 tIyRHLe~~Pe~r~~PIFk~Fe~WCqDEnRHGd~Fa~lmraqP~ll~g~~~kLW~RFFLLsVfa 240 (357)
T PLN02508 177 TIYRHLQANPDYQLYPIFKYFENWCQDENRHGDFFSALLKAQPQFLNDWKAKLWSRFFCLSVYV 240 (357)
T ss_pred HHHHHHHhCcccccchHHHHHHHHhcccchhHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHH
Confidence 467888887555566789999999999997 555666666655431122233345555554
No 37
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=20.40 E-value=1.1e+02 Score=32.56 Aligned_cols=60 Identities=10% Similarity=0.143 Sum_probs=38.8
Q ss_pred hhhhHHhhcCCCcchhHHHHHHHhcCcCCc----HHHHHHHHHHHHhhccchhHHHHHHHHHHH
Q 006827 496 PLHNYFKQNDCLNYFFCFRWVLIQFKREFE----YEKTMRLWEVLWTHYLSEHLHLYVCVAILK 555 (630)
Q Consensus 496 ~L~~hL~~~~i~~~~f~~rWfltlF~ref~----~~~vlrLWD~~~~~~~~~~f~l~valAIL~ 555 (630)
.+|.||+++--.-.+-.|+||-.|...|+. |..++|-|--++.+..+.-..=|+.+|+..
T Consensus 181 tIyRHLe~~Pe~r~~PIF~~Fe~WCqDEnRHGd~F~~lmraqP~ll~g~~~kLW~RFFLlsVfa 244 (355)
T PRK13654 181 TIYRHLEKHPEHRFHPIFKFFENWCQDENRHGDFFALLMRAQPKLLKGWVNRLWIRFFLLAVFA 244 (355)
T ss_pred HHHHHHHhCcccccCchHHHHHHHhcccchhHHHHHHHHhcCchhhcchHHHHHHHHHHHHHHh
Confidence 367888887555556689999999999997 555666666666432222233345566554
Done!