Query 006827
Match_columns 630
No_of_seqs 305 out of 1701
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 10:01:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006827.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006827hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fkm_A Protein (GYP1P), ORF YO 100.0 8.7E-51 3E-55 440.0 26.3 286 303-602 8-386 (396)
2 2qfz_A TBC1 domain family memb 100.0 8E-51 2.8E-55 433.3 23.4 287 302-602 25-340 (345)
3 2qq8_A TBC1 domain family memb 100.0 1.2E-50 4.1E-55 430.0 23.9 289 302-598 20-312 (334)
4 3qye_A TBC1 domain family memb 100.0 1E-49 3.5E-54 422.4 15.6 271 302-594 29-307 (331)
5 3hzj_A Rabgap1L, RAB GTPase-ac 100.0 4.7E-48 1.6E-52 406.1 16.8 261 303-594 5-274 (310)
6 4hl4_A TBC1 domain family memb 100.0 1E-45 3.4E-50 385.2 17.9 264 304-599 21-290 (292)
7 3qwl_A TBC1 domain family memb 100.0 4.5E-40 1.5E-44 341.2 18.4 254 305-600 28-288 (294)
8 2cay_A VPS36 PH domain, vacuol 92.8 0.35 1.2E-05 44.1 8.4 98 44-157 30-132 (145)
9 2hth_B Vacuolar protein sortin 91.3 1.2 4.1E-05 40.3 10.0 103 44-165 18-134 (140)
10 1pfj_A TFIIH basal transcripti 86.4 3.7 0.00013 35.3 9.0 63 65-145 21-83 (108)
11 1zbp_A Hypothetical protein VP 24.4 41 0.0014 33.6 3.0 35 106-140 168-210 (273)
12 2ijq_A Hypothetical protein; s 22.7 1E+02 0.0036 28.1 5.2 86 530-623 52-148 (161)
13 1y5o_A TFB1, RNA polymerase II 21.2 1.5E+02 0.0052 25.5 5.5 56 62-131 10-65 (115)
No 1
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=100.00 E-value=8.7e-51 Score=440.04 Aligned_cols=286 Identities=24% Similarity=0.477 Sum_probs=252.2
Q ss_pred HHHHHhchhccCCCCChHHHHHHHHhCCCChhhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHhhhcCChHHH
Q 006827 303 SEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQA 382 (630)
Q Consensus 303 ~~~W~~~l~~~g~~~~~~~Lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~lk~~~~~~~~~q~ 382 (630)
.++|+++++.+. .++.++||+. +++|||+.+|+.||++|||++|.+.+ +|+...+.++..|.+++++|......
T Consensus 8 ~~kw~~lL~~~~-~~d~~~Lr~l-~~~GIP~~lR~~vW~~LLg~~~~~~~--~~~~~l~~~~~~Y~~l~~~~~~~~~~-- 81 (396)
T 1fkm_A 8 ISKFDNILKDKT-IINQQDLRQI-SWNGIPKIHRPVVWKLLIGYLPVNTK--RQEGFLQRKRKEYRDSLKHTFSDQHS-- 81 (396)
T ss_dssp HHHHHHHHSSCS-BCCHHHHHHH-HTTCCCGGGHHHHHHHHTTCSCSBGG--GHHHHHHHHHHHHHHHHHHTSSSSCS--
T ss_pred HHHHHHHHcCCC-CCCHHHHHHH-HHcCCCHHHHHHHHHHHHCCCCCChh--HHHHHHHHHHHHHHHHHHHHhhccCc--
Confidence 479999998753 4789999995 57899999999999999999988754 56778888999999999987652111
Q ss_pred hhhhhhhhccccccccccccCCCCccccCCCChhHHHHHHHHHHhhhccCCCccccCcchhHHHHHHhcc----------
Q 006827 383 RRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVME---------- 452 (630)
Q Consensus 383 ~~~~~~~e~~~~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~npdiGYvQGM~dL~apLL~v~~---------- 452 (630)
...+..++|++||.||+|++++|.. ..+++.|+|||.+|+.+||++||||||++|++|||+++.
T Consensus 82 ----~~~~~~~qI~~Dv~RT~p~~~~F~~--~~~~~~L~rIL~aya~~np~iGY~QGmn~i~a~ll~v~~~~~~~~~~~~ 155 (396)
T 1fkm_A 82 ----RDIPTWHQIEIDIPRTNPHIPLYQF--KSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQID 155 (396)
T ss_dssp ----THHHHHHHHHHHGGGSSTTSGGGGS--HHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGG
T ss_pred ----ccHHHHHHHHHHhhhhCCCcccccC--chHHHHHHHHHHHHHHHCCCCCcccCcHHHHHHHHHHHHHhhccccccc
Confidence 1223457999999999999999986 357899999999999999999999999999999999862
Q ss_pred --------c----------hhhHHHHHHHHHHhhCCCCCCCcchhhhhHHHHHHHHHhhChhhhhHHhhcCCCcchhHHH
Q 006827 453 --------D----------ESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFR 514 (630)
Q Consensus 453 --------d----------E~~AFw~f~~lm~~~~~~F~~d~~gm~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~r 514 (630)
+ |++|||||++||+++..+|..++.|+...+..++.||+..+|+||+||++.++.+.+|+++
T Consensus 156 ~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~~~f~~~~~~i~~~~~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~r 235 (396)
T 1fkm_A 156 DVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNYIHGQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFR 235 (396)
T ss_dssp GTTTSCGGGTCCHHHHHHHHHHHHHHHHHHHGGGGGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCTHHHHHH
T ss_pred cccccchhhccchhhhhhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 2 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCcCCcHHHHHHHHHHHHhhc------------------------------------------------------
Q 006827 515 WVLIQFKREFEYEKTMRLWEVLWTHY------------------------------------------------------ 540 (630)
Q Consensus 515 WfltlF~ref~~~~vlrLWD~~~~~~------------------------------------------------------ 540 (630)
||+++|+++||+++++||||++|++|
T Consensus 236 W~l~LF~~~~p~~~vlrlWD~~l~eg~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 315 (396)
T 1fkm_A 236 WMNCLLMREFQMGTVIRMWDTYLSETSQEVTSSYSMSSNDIKPPVTPTEPRVASFVTPTKDFQSPTTALSNMTPNNAVED 315 (396)
T ss_dssp HHHTTTGGGSCHHHHHHHHHHHHHHHC-----------------------------------------------------
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHCCCccccchhhhhcccccCCcccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999987
Q ss_pred -------cchhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCC----CCHHHHHHHHHHHHHhhccCC
Q 006827 541 -------LSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGR----IDLDAILRDAEALCICAGENG 602 (630)
Q Consensus 541 -------~~~~f~l~valAIL~~~r~~Il~~~~d~deIlk~ln~l~~~----id~~~iL~~A~~L~~~~~e~~ 602 (630)
....|++|+|+|||..+|+.||+ +||++++++|+++|.. .|++.++.+|..++..+..+.
T Consensus 316 ~~~~~~~~~~~~~~~v~~AlL~~~r~~Ll~--~df~~~l~~L~~~p~~~~~~~di~~ll~~A~~l~~~~~~~~ 386 (396)
T 1fkm_A 316 SGKMRQSSLNEFHVFVCAAFLIKWSDQLME--MDFQETITFLQNPPTKDWTETDIEMLLSEAFIWQSLYKDAT 386 (396)
T ss_dssp -------CHHHHHHHHHHHHHHHTHHHHTT--CCHHHHHHHHTSCSCTTCCHHHHHHHHHHHHHHHHHHC---
T ss_pred chhccccchHHHHHHHHHHHHHHHHHHHHh--cCHHHHHHHHhcCCCCCcccccHHHHHHHHHHHHHHHhccH
Confidence 11479999999999999999995 5999999999999864 589999999999988876554
No 2
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=100.00 E-value=8e-51 Score=433.26 Aligned_cols=287 Identities=25% Similarity=0.474 Sum_probs=248.8
Q ss_pred CHHHHHhchhccCCCCChHHHHHHHHhCCCChhhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHhhhcCChHH
Q 006827 302 GSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQ 381 (630)
Q Consensus 302 ~~~~W~~~l~~~g~~~~~~~Lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~lk~~~~~~~~~q 381 (630)
..++|.++++.+ .++.++||+. +++|||+.+|+.||++|||++|.+. ++|....+.++..|.+++++|......+
T Consensus 25 r~~kw~~~l~~~--~~d~~~Lr~l-~~~GiP~~~R~~vW~~llg~~p~~~--~~~~~~l~~~~~~Y~~l~~~~~~~~~~~ 99 (345)
T 2qfz_A 25 RLDKFKQLLAGP--NTDLEELRRL-SWSGIPKPVRPMTWKLLSGYLPANV--DRRPATLQRKQKEYFAFIEHYYDSRNDE 99 (345)
T ss_dssp HHHHHHHHHHCS--BCCHHHHHHH-HTTCCCGGGHHHHHHHHTTSSCSBG--GGHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHcCC--CCCHHHHHHH-HHCCCCHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHHHHHHHHHhhcCCCcc
Confidence 458999999764 4789999996 5799999999999999999988764 4677788888999999999886532211
Q ss_pred HhhhhhhhhccccccccccccCCCCccccCCCChhHHHHHHHHHHhhhccCCCccccCcchhHHHHHHhcc---------
Q 006827 382 ARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVME--------- 452 (630)
Q Consensus 382 ~~~~~~~~e~~~~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~npdiGYvQGM~dL~apLL~v~~--------- 452 (630)
...+..++|++||.||+|+ ++|..+ .+++.|+|||.+|+.+||++||||||++|++|||+++.
T Consensus 100 -----~~~~~~~~I~~Dv~RT~p~-~~F~~~--~~~~~L~rIL~~ya~~~p~vgY~QGm~~i~a~ll~v~~~~~~~~~~~ 171 (345)
T 2qfz_A 100 -----VHQDTYRQIHIDIPRMSPE-ALILQP--KVTEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFICEYIEAEEV 171 (345)
T ss_dssp ------CHHHHHHHHHHGGGCSCH-HHHTSH--HHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHGGGCC----
T ss_pred -----chHHHHHHHHHhCcccCCc-cccCCc--hHHHHHHHHHHHHHHHCCCCCcccChHHHHHHHHHHHHhhhcccccc
Confidence 1224457999999999999 999854 46789999999999999999999999999999999874
Q ss_pred ---------------chhhHHHHHHHHHHhhCCCCCCCcchhhhhHHHHHHHHHhhChhhhhHHhhcCCCcchhHHHHHH
Q 006827 453 ---------------DESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVL 517 (630)
Q Consensus 453 ---------------dE~~AFw~f~~lm~~~~~~F~~d~~gm~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfl 517 (630)
+|++|||||+++|+++..+|..++.|+...+..++.||+..+|+||+||++.++.+.+|+++||+
T Consensus 172 ~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~~~y~~~~~~i~~~~~~l~~ll~~~dP~L~~hL~~~~i~~~~f~~~W~~ 251 (345)
T 2qfz_A 172 DTVDVSGVPAEVLCNIEADTYWCMSKLLDGIQDNYTFAQPGIQMKVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMN 251 (345)
T ss_dssp -CCCCTTSCHHHHHHHHHHHHHHHHHHHHTSGGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhHHHHHHHHHHHHHHccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHH
Confidence 38999999999999998889988999999999999999999999999999999999999999999
Q ss_pred HhcCcCCcHHHHHHHHHHHHhhccch-hHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCC----CCHHHHHHHHH
Q 006827 518 IQFKREFEYEKTMRLWEVLWTHYLSE-HLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGR----IDLDAILRDAE 592 (630)
Q Consensus 518 tlF~ref~~~~vlrLWD~~~~~~~~~-~f~l~valAIL~~~r~~Il~~~~d~deIlk~ln~l~~~----id~~~iL~~A~ 592 (630)
++|+++||+++++||||++|+++... .|++|+|+|+|..+++.||++. |+++++++++++|.. .|++.++..|.
T Consensus 252 ~lF~~~~p~~~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~-d~~~il~~L~~~p~~~~~~~di~~ll~~A~ 330 (345)
T 2qfz_A 252 NLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEK-DFQELLLFLQNLPTAHWDDEDISLLLAEAY 330 (345)
T ss_dssp TTTTTTSCHHHHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCC-CHHHHHHHHTSCSCTTCCHHHHHHHHHHHH
T ss_pred HHHcccCCHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhC-CHHHHHHHHHcCCCcCCchhHHHHHHHHHH
Confidence 99999999999999999999987543 4899999999999999999754 999999999999865 37999999999
Q ss_pred HHHHhhccCC
Q 006827 593 ALCICAGENG 602 (630)
Q Consensus 593 ~L~~~~~e~~ 602 (630)
.|..++..+.
T Consensus 331 ~l~~~~~~~~ 340 (345)
T 2qfz_A 331 RLKFAFADAP 340 (345)
T ss_dssp HHHHHC----
T ss_pred HHHHHHHhhH
Confidence 9999887655
No 3
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-50 Score=429.97 Aligned_cols=289 Identities=20% Similarity=0.376 Sum_probs=240.5
Q ss_pred CHHHHH-hchhccCCCCChHHHHHHHHhCCCChhhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHhhhcCChH
Q 006827 302 GSEEWT-TFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPE 380 (630)
Q Consensus 302 ~~~~W~-~~l~~~g~~~~~~~Lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~lk~~~~~~~~~ 380 (630)
...+|. .++.+++...+.+++|+ ++++|||+++|+.||++|+|+. ...+.+.+..+.+..++.|..+...+.....+
T Consensus 20 ~~~~W~~~il~~w~~~~~~~~lr~-l~~~GIP~~lR~~vW~~llg~~-~~~~~~~y~~ll~~~~~~~~~~~~~~~~~~~~ 97 (334)
T 2qq8_A 20 AVLTWNNEILPNWETMWCSRKVRD-LWWQGIPPSVRGKVWSLAIGNE-LNITHELFDICLARAKERWRSLSTGGSEVENE 97 (334)
T ss_dssp HHHHHHHTTGGGCC--CCCHHHHH-HHHTCCCHHHHHHHHHHHHCCT-TCCCHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHhHHhccChHHHHH-HHHCCCCHHHHHHHHHHHhCCc-cccCHHHHHHHHHHHHHHHHHhccccccCccc
Confidence 358998 58888888888999998 5689999999999999999985 46677777777776677776665443221111
Q ss_pred HHh-hhhhhhhccccccccccccCCCCccccCCCChhHHHHHHHHHHhhhccCCCccccCcchhHHHHHHhccchhhHHH
Q 006827 381 QAR-RFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFW 459 (630)
Q Consensus 381 q~~-~~~~~~e~~~~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~npdiGYvQGM~dL~apLL~v~~dE~~AFw 459 (630)
+.. ......+..++|++||.||+|++++|.. .+++++.|+|||.+|+.+||++||||||++|+++||+++ +|++|||
T Consensus 98 d~~~~~~~~~~~~~~I~~Dv~RT~p~~~~F~~-~~~~~~~L~rIL~aya~~~p~vgY~QGm~~iaa~lLl~~-~E~~aF~ 175 (334)
T 2qq8_A 98 DAGFSAADREASLELIKLDISRTFPNLCIFQQ-GGPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNL-DTADAFI 175 (334)
T ss_dssp ---------CCHHHHHHHHHHTSSGGGCSSST-TSTTHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHS-CHHHHHH
T ss_pred ccccccccchhHHHHHHHHHhhcCCCchhhcC-CCchHHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHhcC-CHHHHHH
Confidence 100 0011134567999999999999999986 356899999999999999999999999999999999998 5999999
Q ss_pred HHHHHHHhhC--CCCCCCcchhhhhHHHHHHHHHhhChhhhhHHhhcCCCcchhHHHHHHHhcCcCCcHHHHHHHHHHHH
Q 006827 460 CFVALMERLG--PNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLW 537 (630)
Q Consensus 460 ~f~~lm~~~~--~~F~~d~~gm~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfltlF~ref~~~~vlrLWD~~~ 537 (630)
||++||+++. .+|..+++++...+..++.|++..+|+||+||++.++.+.+|+++||+|+|+++||++.++||||++|
T Consensus 176 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l 255 (334)
T 2qq8_A 176 AFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFC 255 (334)
T ss_dssp HHHHHHTSHHHHHHHSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHhccCCChHHHHHHHHHHHHHHHHHCHHHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 9999999763 35777889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccchhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhh
Q 006827 538 THYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICA 598 (630)
Q Consensus 538 ~~~~~~~f~l~valAIL~~~r~~Il~~~~d~deIlk~ln~l~~~id~~~iL~~A~~L~~~~ 598 (630)
++| ..|++++|+|||..+++.|++ +++++++++++++|..+|++.++..|..|..+.
T Consensus 256 ~eg--~~~l~~valaiL~~~~~~Ll~--~d~~~il~~L~~lp~~~d~~~l~~~a~~l~~~~ 312 (334)
T 2qq8_A 256 RDG--EEFLFRTALGILKLFEDILTK--MDFIHMAQFLTRLPEDLPAEELFASIATIQMQS 312 (334)
T ss_dssp HHC--HHHHHHHHHHHHHHTHHHHHT--CCHHHHHHHHHSCCTTCCHHHHHHHHHHCCCEE
T ss_pred HcC--CHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHhCCCcCCHHHHHHHHHHccCcH
Confidence 987 679999999999999999995 499999999999999999999999999887544
No 4
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=100.00 E-value=1e-49 Score=422.37 Aligned_cols=271 Identities=20% Similarity=0.396 Sum_probs=236.4
Q ss_pred CHHHHHhchhccCC---CCChHHHHHHHHhCCCChhhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHhhhcCC
Q 006827 302 GSEEWTTFLDNEGR---VMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSIS 378 (630)
Q Consensus 302 ~~~~W~~~l~~~g~---~~~~~~Lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~lk~~~~~~~ 378 (630)
+.++|+++++++|+ ..+.+++++.+ ++|||+.+|+.||++|+|++++..+.+++ .......|.++.+++.
T Consensus 29 ~~~~W~~~l~~~~~~~~~~~~~~l~~~~-~~GIP~~lR~~vW~~Llg~~~~~~~~~~~---~~~~~~~Y~~l~~~~~--- 101 (331)
T 3qye_A 29 VTTVWEKMLSTPGRSKIKFDMEKMHSAV-GQGVPRHHRGEIWKFLAEQFHLKHQFPSK---QQPKDVPYKELLKQLT--- 101 (331)
T ss_dssp HHHHHHHHHTCTTGGGCCCCHHHHHHHH-HTCCCGGGHHHHHHHHHHHHHHHCCCCSS---SCCCCCCHHHHTTSCC---
T ss_pred HHHHHHHHhccCCCCcccCCHHHHHHHH-HcCCCHHHHHHHHHHHhCcchhhhcchhh---hhhchHHHHHHHHhcC---
Confidence 56889999998887 35789999965 78999999999999999986532221111 1234567888876432
Q ss_pred hHHHhhhhhhhhccccccccccccCCCCccccCCCChhHHHHHHHHHHhhhccCCCccccCcchhHHHHHHhccchhhHH
Q 006827 379 PEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSF 458 (630)
Q Consensus 379 ~~q~~~~~~~~e~~~~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~npdiGYvQGM~dL~apLL~v~~dE~~AF 458 (630)
...++|++||.||+|++++|..+.+++++.|++||.+|+.+||++||||||++|+++||+++ +|++||
T Consensus 102 -----------~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~ay~~~~p~igY~QGm~~i~a~ll~~~-~E~~aF 169 (331)
T 3qye_A 102 -----------SQQHAILIDLGRTFPTHPYFSAQLGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHM-SEEEAF 169 (331)
T ss_dssp -----------TTHHHHHHHHTTSSTTSTTTCSTTCHHHHHHHHHHHHHHHHCTTTSSCTTHHHHHHHHHTTS-CHHHHH
T ss_pred -----------CchhHHHHhhcccCCCchhhcCCCcccHHHHHHHHHHHHHHCCCccccccHHHHHHHHHHHh-hHHHHH
Confidence 22368999999999999999998889999999999999999999999999999999999998 599999
Q ss_pred HHHHHHHHhh--CCCCCCCcchhhhhHHHHHHHHHhhChhhhhHHhhcCCCcchhHHHHHHHhcCcCCcHHHHHHHHHHH
Q 006827 459 WCFVALMERL--GPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVL 536 (630)
Q Consensus 459 w~f~~lm~~~--~~~F~~d~~gm~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfltlF~ref~~~~vlrLWD~~ 536 (630)
|||+++|+++ ..+|.+++.+++..+..++.|++.++|+||+||++.++.+.+|+++||+++|+++||++.++||||++
T Consensus 170 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~ 249 (331)
T 3qye_A 170 KMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYHRDLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMI 249 (331)
T ss_dssp HHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHH
Confidence 9999999874 56788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccchhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCC---CHHHHHHHHHHH
Q 006827 537 WTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRI---DLDAILRDAEAL 594 (630)
Q Consensus 537 ~~~~~~~~f~l~valAIL~~~r~~Il~~~~d~deIlk~ln~l~~~i---d~~~iL~~A~~L 594 (630)
|++| ..|++++|+|||..+++.|+++. +++++++++++...++ |++.+++.|..+
T Consensus 250 l~~g--~~~l~~valaiL~~~~~~ll~~~-~~~~il~~l~~~~p~~~~~di~~li~~A~~l 307 (331)
T 3qye_A 250 FLQG--TEVIFKVALSLLGSHKPLILQHE-NLETIVDFIKSTLPNLGLVQMEKTINQVFEM 307 (331)
T ss_dssp HHHC--TTHHHHHHHHHHHHTHHHHHTCC-SHHHHHHHHHHTTTCCCHHHHHHHHHHHHHC
T ss_pred HHCC--cHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHhhCCCCCHHHHHHHHHHHHhC
Confidence 9987 46999999999999999999865 9999999999955556 678888888655
No 5
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.7e-48 Score=406.07 Aligned_cols=261 Identities=23% Similarity=0.405 Sum_probs=229.8
Q ss_pred HHHHHhchhccCCCC--ChHHHHHHHHhCCCChhhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHhhhcCChH
Q 006827 303 SEEWTTFLDNEGRVM--DSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPE 380 (630)
Q Consensus 303 ~~~W~~~l~~~g~~~--~~~~Lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~lk~~~~~~~~~ 380 (630)
.++|.++++++++.. +.++|++.+ ++|||+.+|+.||+.|+|+.+. ....+.|..+..+.
T Consensus 5 ~~~W~~~~~~w~~~~~~~~~~l~~l~-~~GIP~~lR~~vW~~llg~~~~-----------~~~~~~Y~~l~~~~------ 66 (310)
T 3hzj_A 5 LYSWGELLGKWHSNLGARPKGLSTLV-KSGVPEALRAEVWQLLAGCHDN-----------QAMLDRYRILITKD------ 66 (310)
T ss_dssp -CCHHHHHHHHHTSTTSCCTTHHHHH-HHCCCGGGHHHHHHHHTTCCCC-----------HHHHHHHHHHTTSC------
T ss_pred HHHHHHHHHHHhhhcccCHHHHHHHH-HCCCCHHHHHHHHHHHHCCCcc-----------hhHHHHHHHHHhcc------
Confidence 468999998876664 568899855 8999999999999999998652 12245677775431
Q ss_pred HHhhhhhhhhccccccccccccCCCCccccCCCChhHHHHHHHHHHhhhccCCCccccCcchhHHHHHHhccchhhHHHH
Q 006827 381 QARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWC 460 (630)
Q Consensus 381 q~~~~~~~~e~~~~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~npdiGYvQGM~dL~apLL~v~~dE~~AFw~ 460 (630)
....++|++||.||+|++++|..+.+.+++.|+|||.+|+.+||++||||||++|+++||+++ +|++||||
T Consensus 67 --------~~~~~~I~~Dv~Rt~p~~~~f~~~~~~~~~~L~~IL~ay~~~~p~igY~QGm~~iaa~lL~~~-~e~~aF~~ 137 (310)
T 3hzj_A 67 --------SAQESVITRDIHRTFPAHDYFKDTGGDGQESLYKICKAYSVYDEDIGYCQGQSFLAAVLLLHM-PEEQAFCV 137 (310)
T ss_dssp --------CTTHHHHHHHHTTSSTTSTTTSSTTSHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHS-CHHHHHHH
T ss_pred --------CCcHHHHHHHHHhhCCCchhhcCCCchhHHHHHHHHHHHHHHCCCCCccCCHHHHHHHHHHhC-CHHHHHHH
Confidence 122468999999999999999988888999999999999999999999999999999999999 69999999
Q ss_pred HHHHHHh--hCCCCCCCcchhhhhHHHHHHHHHhhChhhhhHHhhcCCCcchhHHHHHHHhcCcCCcHHHHHHHHHHHHh
Q 006827 461 FVALMER--LGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWT 538 (630)
Q Consensus 461 f~~lm~~--~~~~F~~d~~gm~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfltlF~ref~~~~vlrLWD~~~~ 538 (630)
|+++|++ +..+|..++.++...+..++.+++..+|+||+||++.++.+.+|+++||+|+|+++||++.++||||++++
T Consensus 138 l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~p~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~ 217 (310)
T 3hzj_A 138 LVKIMYDYGLRDLYRNNFEDLHCKFYQLERLMQEQLPDLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLC 217 (310)
T ss_dssp HHHHHHTSCGGGGTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHhcccccccccccHHHHHHHHHHHHHHHHHhChHHHHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 9999987 55678787889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH-hCCC----CCCHHHHHHHHHHH
Q 006827 539 HYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFIN-ELSG----RIDLDAILRDAEAL 594 (630)
Q Consensus 539 ~~~~~~f~l~valAIL~~~r~~Il~~~~d~deIlk~ln-~l~~----~id~~~iL~~A~~L 594 (630)
+| ..+++++|+|||..+++.|+++ ++++++++++ .+|. ..|++.+++.|..+
T Consensus 218 ~g--~~~l~~v~lail~~~~~~Ll~~--d~~~~l~~l~~~lp~~~~~~~d~~~ll~~A~~l 274 (310)
T 3hzj_A 218 EG--LNIIFHVALALLKTSKEDLLQA--DFEGALKFFRVQLPKRYRAEENARRLMEQACNI 274 (310)
T ss_dssp HC--TTHHHHHHHHHHHHTHHHHHTC--CHHHHHHHHHTHHHHTTCSHHHHHHHHHHHHHS
T ss_pred CC--cHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHhCcccccccccHHHHHHHHHhc
Confidence 87 5689999999999999999964 9999999997 5653 35899999999877
No 6
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=100.00 E-value=1e-45 Score=385.16 Aligned_cols=264 Identities=18% Similarity=0.276 Sum_probs=224.1
Q ss_pred HHHHhchhccCCCCChHHHHHHHHhC-C-CChhhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHhhhcCChHH
Q 006827 304 EEWTTFLDNEGRVMDSNALRKRIFYG-G-VDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQ 381 (630)
Q Consensus 304 ~~W~~~l~~~g~~~~~~~Lk~~i~~~-G-Ip~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~lk~~~~~~~~~q 381 (630)
+.++..+.. ..++.++||+.+..+ | +|+++|+.||+.|+|+.+..... .|.....
T Consensus 21 ~~i~~~l~~--~~~dl~~Lr~l~~~~~g~~p~~lR~~vW~~Llg~~~~~~~~------------~~~~~~~--------- 77 (292)
T 4hl4_A 21 AEIHQALNS--DPTDVAALRRMAISEGGLLTDEIRRKVWPKLLNVNANDPPP------------ISGKNLR--------- 77 (292)
T ss_dssp HHHHHHHTS--SSCCHHHHHHHHHSTTCSCCHHHHHHHHHHHTTCCSCSCCS------------CCCTTHH---------
T ss_pred HHHHHHHcC--CcccHHHHHHHHcCCCCCCChhHHHHHHHHHhCCCcccCCC------------chhhhhc---------
Confidence 556666643 347899999977653 3 79999999999999998765321 1111000
Q ss_pred HhhhhhhhhccccccccccccCCCCccccCC--CChhHHHHHHHHHHhhhccCCCccccCcchhHHHHHHhccchhhHHH
Q 006827 382 ARRFTKFRERKGLIDKDVVRTDRSVTFFDGD--DNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFW 459 (630)
Q Consensus 382 ~~~~~~~~e~~~~IekDV~RT~~~~~~f~~~--~~~~~~~L~~IL~ay~~~npdiGYvQGM~dL~apLL~v~~dE~~AFw 459 (630)
...+..++|++||.||+|+++.|..+ ...+++.|+|||.+|+.+||++|||||||+|++|||+++ +|++|||
T Consensus 78 -----~~~~~~~qI~~Dv~RT~~~~~~~~~~~~~~~~~~~L~~iL~ay~~~~p~vgY~QGm~~iaa~lLl~~-~e~~aF~ 151 (292)
T 4hl4_A 78 -----QMSKDYQQVLLDVRRSLRRFPPGMPEEQREGLQEELIDIILLILERNPQLHYYQGYHDIVVTFLLVV-GERLATS 151 (292)
T ss_dssp -----HHCTTHHHHHHHHHTTGGGSCTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCTTHHHHHHHHHHHH-CHHHHHH
T ss_pred -----ccchhHHHHHHhhhhhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCeeccHHHHHHHHHHHc-CHHHHHH
Confidence 11234579999999999999887642 245678899999999999999999999999999999998 5999999
Q ss_pred HHHHHHHhhCCC-CCCCcchhhhhHHHHHHHHHhhChhhhhHHhhcCCCcchhHHHHHHHhcCcCCc-HHHHHHHHHHHH
Q 006827 460 CFVALMERLGPN-FNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFE-YEKTMRLWEVLW 537 (630)
Q Consensus 460 ~f~~lm~~~~~~-F~~d~~gm~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfltlF~ref~-~~~vlrLWD~~~ 537 (630)
||+++|++..++ |..++.+++..+..++.+++..+|+||+||++.++. .+|+++||+|+|+++++ ++.++||||++|
T Consensus 152 ~l~~l~~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~P~L~~hL~~~~i~-~~~~~~W~ltlF~~~l~~~~~~~rlWD~~l 230 (292)
T 4hl4_A 152 LVEKLSTHHLRDFMDPTMDNTKHILNYLMPIIDQVNPELHDFMQSAEVG-TIFALSWLITWFGHVLSDFRHVVRLYDFFL 230 (292)
T ss_dssp HHHHHHHTTTTGGGCSSSCTTTGGGGGHHHHHHHHCHHHHHHHC-CCCC-SGGGHHHHHTTTTTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHCHHHHHHHHHcCCC-cchHHHHHHHHHhhhcCcHHHHHHHHHHHH
Confidence 999999976554 667788999999999999999999999999999995 68999999999999996 999999999999
Q ss_pred hhccchhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhc
Q 006827 538 THYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICAG 599 (630)
Q Consensus 538 ~~~~~~~f~l~valAIL~~~r~~Il~~~~d~deIlk~ln~l~~~id~~~iL~~A~~L~~~~~ 599 (630)
+++ ..|++|+|+||+..+++.||++..++++++++++++|..+|++.++..|..|+.+.+
T Consensus 231 ~~g--~~~~~~v~~ail~~~~~~Ll~~~~d~~~l~~~l~~lp~~~d~~~li~~A~~l~~~~p 290 (292)
T 4hl4_A 231 ACH--PLMPIYFAAVIVLYREQEVLDCDCDMASVHHLLSQIPQDLPYETLISRAGDLFVQFP 290 (292)
T ss_dssp HSC--TTHHHHHHHHHHHHTHHHHHTSCCSTTHHHHHHHSCCSSCCHHHHHHHHHHHHHHSC
T ss_pred HcC--CcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHCC
Confidence 987 469999999999999999999877899999999999999999999999999998765
No 7
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}
Probab=100.00 E-value=4.5e-40 Score=341.25 Aligned_cols=254 Identities=15% Similarity=0.214 Sum_probs=209.6
Q ss_pred HHHhchhccCCCCChHHHHHHHHhCCCChhhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHhhhcCChHHHhh
Q 006827 305 EWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARR 384 (630)
Q Consensus 305 ~W~~~l~~~g~~~~~~~Lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~lk~~~~~~~~~q~~~ 384 (630)
..+.++ ++..++.++||+.+++||||+.+|+.||++|+|+.|.+++. |+.+.++++++|++++++..
T Consensus 28 ~~~~ll--~~~~~d~~~L~~~~~~g~IP~~~R~~vWklLlGylP~~~~~--~~~~l~~kr~eY~~l~~~~~--------- 94 (294)
T 3qwl_A 28 SLEILL--KDDRLDTEKLCTFSQRFPLPSMYRALVWKVLLGILPPHHES--HAKVMMYRKEQYLDVLHALK--------- 94 (294)
T ss_dssp HHHHHT--TSSBCCHHHHHHHHHHSCCCHHHHHHHHHHHTTSSCSBGGG--HHHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHh--cCCCCCHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCchh--HHHHHHHHHHHHHHHHHhhh---------
Confidence 344554 45789999999988777799999999999999999988654 78889999999999998632
Q ss_pred hhhhhhccccccccccccCCCCccccCCCChhHHHHHHHHH-------HhhhccCCCccccCcchhHHHHHHhccchhhH
Q 006827 385 FTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILL-------TYSFYNFDLGYCQGMSDLLSPILFVMEDESQS 457 (630)
Q Consensus 385 ~~~~~e~~~~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~-------ay~~~npdiGYvQGM~dL~apLL~v~~dE~~A 457 (630)
..++|+.+.++. ..-+...+. +| -.+++ .++|||++|+++++.++.+|++|
T Consensus 95 ------~~r~I~~~tP~~--------------~vfl~~~~~~~~~l~~~~-~~~~~-~~~~~~~~Iaa~ll~l~~~E~dA 152 (294)
T 3qwl_A 95 ------VVRFVSDATPQA--------------EVYLRMYQLESGKLPRSP-SFPLE-PDDEVFLAIAKAMEEMVEDSVDC 152 (294)
T ss_dssp ------HTTSCCTTSCHH--------------HHHHHHHHHHHTCCCSST-TSCCC-HHHHHHHHHHHHHHHHCCSHHHH
T ss_pred ------hhhhhhccCchH--------------HHHHHHHHcccccccccc-cCCcc-cchhhHHHHHHHHHHHhCCHHHH
Confidence 224555432211 111111111 11 11233 24599999999999999999999
Q ss_pred HHHHHHHHHhhCCCCCCCcchhhhhHHHHHHHHHhhChhhhhHHhhcCCCcchhHHHHHHHhcCcCCcHHHHHHHHHHHH
Q 006827 458 FWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLW 537 (630)
Q Consensus 458 Fw~f~~lm~~~~~~F~~d~~gm~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfltlF~ref~~~~vlrLWD~~~ 537 (630)
||||++||+++..+|..+++|++.. ++.|++.++|+||+||++.++.+.+++.+||+++|+++||+++++||||++|
T Consensus 153 FW~f~~Lm~~l~~~f~~~~~gl~~~---l~~LL~~~dP~L~~HL~~~~i~~~~~~~rWfl~lF~~~~p~~~vlRlWD~~~ 229 (294)
T 3qwl_A 153 YWITRRFVNQLNTKYRDSLPQLPKA---FEQYLNLEDGRLLTHLRMCSAAPKLPYDLWFKRCFAGCLPESSLQRVWDKVV 229 (294)
T ss_dssp HHHHHHHHHHHHTTTTTTGGGHHHH---HHHHHHHHCHHHHHHHHHTTCGGGSCHHHHHTSTTTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCChhHHHHH---HHHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 9999999999999999999999876 4899999999999999999998877777999999999999999999999999
Q ss_pred hhccchhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhcc
Q 006827 538 THYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICAGE 600 (630)
Q Consensus 538 ~~~~~~~f~l~valAIL~~~r~~Il~~~~d~deIlk~ln~l~~~id~~~iL~~A~~L~~~~~e 600 (630)
+++ .+|++++|+|||+.+++.||+.. .+++|+++++++| ..|++.++.+|..|+.+...
T Consensus 230 ~~~--~~~l~~valAiL~~~r~~Ll~~~-~~~~il~~Lq~lp-~~di~~ll~~A~~l~~~~~~ 288 (294)
T 3qwl_A 230 SGS--CKILVFVAVEILLTFKIKVMALN-SAEKITKFLENIP-QDSSDAIVSKAIDLWHKHCG 288 (294)
T ss_dssp TTC--STHHHHHHHHHHHHTHHHHHHCC-SHHHHHHHHTTCC-STTHHHHHHHHHHHHHHHHC
T ss_pred hCC--chHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHcCC-cccHHHHHHHHHHHHHHcCC
Confidence 865 67999999999999999999764 5599999999998 77999999999999988755
No 8
>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12
Probab=92.79 E-value=0.35 Score=44.14 Aligned_cols=98 Identities=12% Similarity=0.165 Sum_probs=70.4
Q ss_pred EEEEeeCCeEEccCccc-cCCCCccEEEEeeCCceEEEeEecCCCCCCccccccccCcceeeeeeCCceeEEEecCCCCC
Q 006827 44 ELVYLKDNVTIHPTQFA-SERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFG 122 (630)
Q Consensus 44 ~Llf~Ks~V~vhPt~~~-~d~I~G~L~l~~~~~~~~l~W~P~~~~~~~~~~~~~~~~~y~~~~v~ls~i~si~~~~p~~G 122 (630)
.+||..++|-++..... ...-.|.|-|+- --|-|+|.... .. ..+++||+.|..+.+.+|.+|
T Consensus 30 ~il~~~d~V~Ly~g~~k~~~~k~G~lyLTs----hRIIyv~~~~~-----------~~-~SfslPL~~v~~~e~~~~~fg 93 (145)
T 2cay_A 30 KDIFIDQSVGLYHGKSKILQRQRGRIFLTS----QRIIYIDDAKP-----------TQ-NSLGLELDDLAYVNYSSGFLT 93 (145)
T ss_dssp CEEEEEEEEEEEETTEECTTCSSEEEEEES----SEEEEEESSCH-----------HH-HCEEEEGGGEEEEEEECSSSS
T ss_pred EEEEEcCCcceecCCCCCcCCCccEEEEEc----CeEEEecCCCC-----------cc-eEEEeEhHheeeeeEEcCccc
Confidence 68888889999885533 345667777763 35778874321 11 237899999999999999766
Q ss_pred ceE-EEEEeC---CCCCCCCeeecCCChHHHHHHHHhhc
Q 006827 123 WQY-IIVVLS---SGLAFPPLYFYTGGVREFLATIKQHV 157 (630)
Q Consensus 123 ~~~-~vl~~~---dG~~~PpL~Fh~GG~~~fl~~L~~~~ 157 (630)
+.. |++..+ .|...=-|-|..||..+|-+.|.+-+
T Consensus 94 ~s~Ki~l~~~p~~~~~~~~KLsFk~GGa~eF~~~l~~al 132 (145)
T 2cay_A 94 RSPRLILFFKDPSSSTEFVQLSFRKSDGVLFSQATERAL 132 (145)
T ss_dssp SSCEEEEEESSCSSTTCCEEEEESSSCCHHHHHHHHHHH
T ss_pred cCceEEEEecCCCCCceEEEEEEcCCCchHHHHHHHHHH
Confidence 543 566665 34556778999999999999998633
No 9
>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A
Probab=91.30 E-value=1.2 Score=40.33 Aligned_cols=103 Identities=20% Similarity=0.205 Sum_probs=71.2
Q ss_pred EEEEeeCCeEEccCccccCCCCccEEEEeeCCceEEEeEecCCCCCCccccccccCcceeeeeeCCceeEEEecCCCCCc
Q 006827 44 ELVYLKDNVTIHPTQFASERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGW 123 (630)
Q Consensus 44 ~Llf~Ks~V~vhPt~~~~d~I~G~L~l~~~~~~~~l~W~P~~~~~~~~~~~~~~~~~y~~~~v~ls~i~si~~~~p~~G~ 123 (630)
.+|+..++|-+.........-.|.|.|+ .--|-|+.... . .. .+++||+.|.++...+|.+|-
T Consensus 18 ~il~~~~~V~Ly~g~~k~~~k~G~l~LT----shRli~~d~~~-~-----------~~-s~~lpl~~v~~~e~~~~~f~~ 80 (140)
T 2hth_B 18 TLVIQQRGVRIYDGEEKIKFDAGTLLLS----THRLIWRDQKN-H-----------EC-CMAILLSQIVFIEEQAAGIGK 80 (140)
T ss_dssp CEEEEEEEEEEEETTCSSCCCCEEEEEE----SSEEEEEETTC-C-----------SC-CEEEEGGGEEEEEEECCTTSS
T ss_pred eEEEEcCCEEEecCCCCCCCcCCEEEEe----cCEEEEecCCC-C-----------ce-EEEEEhHHeeeeeeecccccc
Confidence 5788888998887554445567777776 33577865432 1 12 378999999999999996653
Q ss_pred -eEEEEEeCC-------------CCCCCCeeecCCChHHHHHHHHhhccccccccc
Q 006827 124 -QYIIVVLSS-------------GLAFPPLYFYTGGVREFLATIKQHVLLVRAVSI 165 (630)
Q Consensus 124 -~~~vl~~~d-------------G~~~PpL~Fh~GG~~~fl~~L~~~~~l~r~~~~ 165 (630)
.-|++.++. |...=-|-|+.||..+|...|.+ +.-.| .|+
T Consensus 81 s~Ki~l~l~~~~~~~~~gp~~~s~~~~~kLsFr~Gg~~eF~~~L~~-al~~k-~W~ 134 (140)
T 2hth_B 81 SAKIVVHLHPAPPNKEPGPFQSSKNSYIKLSFKEHGQIEFYRRLSE-EMTQR-RWE 134 (140)
T ss_dssp CCEEEEEECCCCCCSSSCCCSTTSCCEEEEEETTSCHHHHHHHHHH-HHHHC-CC-
T ss_pred CceEEEEecCCCccCCCCCcccccCcEEEEEEcCCCChHHHHHHHH-HHHHh-hhc
Confidence 336666654 22233689999999999999986 55455 454
No 10
>1pfj_A TFIIH basal transcription factor complex P62 subunit; PH/PTB domain, structural proteomics in europe, spine, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.9 PDB: 2rnr_B
Probab=86.39 E-value=3.7 Score=35.31 Aligned_cols=63 Identities=14% Similarity=0.259 Sum_probs=47.2
Q ss_pred CccEEEEeeCCceEEEeEecCCCCCCccccccccCcceeeeeeCCceeEEEecCCCCCceEEEEEeCCCCCCCCeeecCC
Q 006827 65 SGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYTG 144 (630)
Q Consensus 65 ~G~L~l~~~~~~~~l~W~P~~~~~~~~~~~~~~~~~y~~~~v~ls~i~si~~~~p~~G~~~~vl~~~dG~~~PpL~Fh~G 144 (630)
.|.|.|... .|+|+|+.. +. . .-++++++|...++.|++.-=--+-|++++|.++ .++|-++
T Consensus 21 dGtL~l~~d----~i~W~p~~~-~~----------~--~vs~~~~~I~~qq~SP~~k~KVqLqi~l~~~~~~-~F~Ftn~ 82 (108)
T 1pfj_A 21 DGALYLMAE----RIAWAPEGK-DR----------F--TISHMYADIKCQKISPEGKAKIQLQLVLHAGDTT-NFHFSNE 82 (108)
T ss_dssp BCEEEEETT----EEEEECSSS-SS----------C--SEEEETTTCCCEEECCSSSSSCEEEEECSSSCEE-EEECCCS
T ss_pred CceEEEEcc----eEEEccCCC-CC----------c--eEEEehhhhhcceeCCCCCccEEEEEEEeCCCce-EEEEcCc
Confidence 399999866 899999554 21 1 1356899999999999955434478888988776 7888887
Q ss_pred C
Q 006827 145 G 145 (630)
Q Consensus 145 G 145 (630)
+
T Consensus 83 ~ 83 (108)
T 1pfj_A 83 S 83 (108)
T ss_dssp S
T ss_pred H
Confidence 5
No 11
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=24.43 E-value=41 Score=33.58 Aligned_cols=35 Identities=14% Similarity=0.374 Sum_probs=29.4
Q ss_pred eeCCceeEEEecCC-CC---CceEEEEEeCCCCC----CCCee
Q 006827 106 VPFTEVRSIRRHTP-AF---GWQYIIVVLSSGLA----FPPLY 140 (630)
Q Consensus 106 v~ls~i~si~~~~p-~~---G~~~~vl~~~dG~~----~PpL~ 140 (630)
||+++|.+|++.+| ++ =|.-..|.+.||.. +|+-|
T Consensus 168 lPf~~I~~l~~~~P~~l~DlvWrpa~l~l~dG~~~~g~iPaRY 210 (273)
T 1zbp_A 168 VPIASINTLEIKSATSLLESVWRPVEFDIDGLGEGEGHMPMTY 210 (273)
T ss_dssp EEGGGEEEEEECCCCSSGGGTEEEEEEEETTTEEEEEEEECBC
T ss_pred eeHHHhhcccccCCCcHHHhhccccEEEEecCCeeEEEeeccC
Confidence 99999999999999 44 58888999999876 56665
No 12
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=22.71 E-value=1e+02 Score=28.13 Aligned_cols=86 Identities=14% Similarity=0.059 Sum_probs=52.7
Q ss_pred HHHHHHHHhhccch-------hHHHH-HHHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCC---CCHHHHHHHHHHHHHhh
Q 006827 530 MRLWEVLWTHYLSE-------HLHLY-VCVAILKRYRNKIMGEQMDFDTLLKFINELSGR---IDLDAILRDAEALCICA 598 (630)
Q Consensus 530 lrLWD~~~~~~~~~-------~f~l~-valAIL~~~r~~Il~~~~d~deIlk~ln~l~~~---id~~~iL~~A~~L~~~~ 598 (630)
=-+|+-+|...... +-++. +|+|+....+...-....-+..-+..|..++.. +|++.++..++.+..
T Consensus 52 HEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~~~~~~~GIDv~~L~~~~~~~l~-- 129 (161)
T 2ijq_A 52 HDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGVPNDYYGVDLLDVRTTVTNALS-- 129 (161)
T ss_dssp HHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTSCTTGGGBCHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCccCCcCHHHHHHHHHHHhh--
Confidence 35677777643222 34566 777777765554433222356677777776643 899999998888754
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCC
Q 006827 599 GENGAASIPPGTPPSLPIDNGLLYS 623 (630)
Q Consensus 599 ~e~~~~~~~~~~~~~~~~~~~~~~~ 623 (630)
.....++|.|++....++.
T Consensus 130 ------dp~~~~~P~l~~dg~~~~~ 148 (161)
T 2ijq_A 130 ------DPSALHGWQIRLDGEYPTC 148 (161)
T ss_dssp ------CGGGGTTCCCCBTTBCCCC
T ss_pred ------CCccCCCCeEEecCCCCCC
Confidence 2222347888886554443
No 13
>1y5o_A TFB1, RNA polymerase II transcription factor B 73 kDa subunit; TFIIH, PH domain, phosphoinositides, VP16; NMR {Saccharomyces cerevisiae} SCOP: b.55.1.9 PDB: 2gs0_A 2k2u_A 2l2i_A 2lox_A*
Probab=21.25 E-value=1.5e+02 Score=25.47 Aligned_cols=56 Identities=14% Similarity=0.295 Sum_probs=39.7
Q ss_pred CCCCccEEEEeeCCceEEEeEecCCCCCCccccccccCcceeeeeeCCceeEEEecCCCCCceEEEEEeC
Q 006827 62 ERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLS 131 (630)
Q Consensus 62 d~I~G~L~l~~~~~~~~l~W~P~~~~~~~~~~~~~~~~~y~~~~v~ls~i~si~~~~p~~G~~~~vl~~~ 131 (630)
.-.-|.|.|.+...--.|.|+|..+ +. ..+|+|+.|..++--+.++.=--+-|+-+
T Consensus 10 KKk~G~lti~eD~~p~~l~W~p~~g-~~-------------~isI~l~~It~LQqTp~ts~KvmLKI~~k 65 (115)
T 1y5o_A 10 EKVSGIIAINEDVSPAELTWRSTDG-DK-------------VHTVVLSTIDKLQATPASSEKMMLRLIGK 65 (115)
T ss_dssp SSCEEEEEEECSSSSCEEEEEESSS-SC-------------EEEEESTTCSEEEECCTTCSSEEEEEEEC
T ss_pred EecccEEEEccCCCcceEEEEECCC-Cc-------------cEEEEhhhhhhhhcCCCCCCceEEEEEEe
Confidence 3467999999888878999999554 21 26799999999986555555333444444
Done!