Query 006827
Match_columns 630
No_of_seqs 305 out of 1701
Neff 7.2
Searched_HMMs 13730
Date Mon Mar 25 10:01:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006827.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/006827hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fkma1 a.69.2.1 (A:249-442) Y 100.0 3.4E-31 2.5E-35 257.1 13.1 158 304-473 8-193 (194)
2 d1fkma2 a.69.2.1 (A:443-630) Y 99.8 2.7E-20 2E-24 178.8 14.1 122 475-598 1-187 (188)
3 d2hthb1 b.55.1.12 (B:3-131) Va 95.5 0.064 4.7E-06 45.9 11.8 95 44-155 14-122 (129)
4 d2rnrb1 b.55.1.9 (B:1-108) TFI 92.4 0.21 1.6E-05 41.1 8.0 74 64-155 20-98 (108)
5 d2caya1 b.55.1.12 (A:1-99,A:25 88.0 0.93 6.8E-05 38.4 8.6 96 44-155 22-122 (130)
6 d1y5oa1 b.55.1.9 (A:2-115) RNA 26.9 47 0.0034 26.6 5.4 55 63-131 10-64 (114)
7 d2ijqa1 a.246.2.1 (A:14-158) H 24.8 42 0.003 28.1 5.0 69 530-598 37-116 (145)
8 d1icwa_ d.9.1.1 (A:) Interleuk 20.2 31 0.0023 24.9 2.8 32 104-135 12-45 (69)
9 d1zsqa1 b.55.1.8 (A:74-198) My 17.7 1.9E+02 0.014 22.8 7.8 94 46-158 12-111 (125)
10 d1zbpa1 e.61.1.1 (A:2-265) Hyp 13.0 42 0.0031 30.6 2.5 35 106-140 167-209 (264)
No 1
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.97 E-value=3.4e-31 Score=257.05 Aligned_cols=158 Identities=23% Similarity=0.450 Sum_probs=132.2
Q ss_pred HHHHhchhccCCCCChHHHHHHHHhCCCChhhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHhhhcCChHHHh
Q 006827 304 EEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQAR 383 (630)
Q Consensus 304 ~~W~~~l~~~g~~~~~~~Lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~lk~~~~~~~~~q~~ 383 (630)
++|.+++.+ ...++.++||+. +++|||+++|+.||++|||++|.+++. ++....+++..|.....+.......
T Consensus 8 ~~~~~~l~~-~~~i~~~~lr~l-~~~Gip~~lR~~vW~~llg~~~~~~~~--~~~~~~~~~~~y~~~~~~~~~~~~~--- 80 (194)
T d1fkma1 8 SKFDNILKD-KTIINQQDLRQI-SWNGIPKIHRPVVWKLLIGYLPVNTKR--QEGFLQRKRKEYRDSLKHTFSDQHS--- 80 (194)
T ss_dssp HHHHHHHSS-CSBCCHHHHHHH-HTTCCCGGGHHHHHHHHTTCSCSBGGG--HHHHHHHHHHHHHHHHHHTSSSSCS---
T ss_pred HHHHHHhcc-cCCCCHHHHHHH-HHcCCChHHHHHHHHHHHhhcCCchhh--HHHHHHHHhhhhhhhhhhhhhcccc---
Confidence 678888765 667899999985 589999999999999999999988764 4556678888898887765433211
Q ss_pred hhhhhhhccccccccccccCCCCccccCCCChhHHHHHHHHHHhhhccCCCccccCcchhHHHHHHhccc----------
Q 006827 384 RFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMED---------- 453 (630)
Q Consensus 384 ~~~~~~e~~~~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~npdiGYvQGM~dL~apLL~v~~d---------- 453 (630)
...+..++|++||.||+|++++|.. .++++.|+|||.+|+.+||++||||||++|||||+.++.+
T Consensus 81 ---~~~~~~~~I~~Dv~RT~~~~~~f~~--~~~~~~L~rIL~~ya~~np~~gY~QGmn~i~a~ll~v~~~~~~~~~~~~~ 155 (194)
T d1fkma1 81 ---RDIPTWHQIEIDIPRTNPHIPLYQF--KSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDD 155 (194)
T ss_dssp ---THHHHHHHHHHHGGGSSTTSGGGGS--HHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGG
T ss_pred ---cchHHHHHHHHHHHhcCCccccccc--chhHHHHHHHHHHHHHHCCCCCeeecchHHHHHHHHHHhhhhhhhhhhhh
Confidence 2234567999999999999999985 4578999999999999999999999999999999998632
Q ss_pred ------------------hhhHHHHHHHHHHhhCCCCC
Q 006827 454 ------------------ESQSFWCFVALMERLGPNFN 473 (630)
Q Consensus 454 ------------------E~~AFw~f~~lm~~~~~~F~ 473 (630)
|++|||||+++|+++..+|.
T Consensus 156 ~~~~~~~~~~~~~~~~~~Ead~F~~f~~lm~~i~d~y~ 193 (194)
T d1fkma1 156 VEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNYI 193 (194)
T ss_dssp TTTSCGGGTCCHHHHHHHHHHHHHHHHHHHGGGGGGSS
T ss_pred hhhcchhhhhhhhhhhhHHHHHHHHHHHHHHhhhccCC
Confidence 88999999999999988875
No 2
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.82 E-value=2.7e-20 Score=178.77 Aligned_cols=122 Identities=27% Similarity=0.541 Sum_probs=111.5
Q ss_pred CcchhhhhHHHHHHHHHhhChhhhhHHhhcCCCcchhHHHHHHHhcCcCCcHHHHHHHHHHHHhhccc------------
Q 006827 475 DQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLS------------ 542 (630)
Q Consensus 475 d~~gm~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rWfltlF~ref~~~~vlrLWD~~~~~~~~------------ 542 (630)
+|+|++.++..++.+++.+||+||+||++.|+++.+|++|||+++|+++||+++++||||++|+++..
T Consensus 1 gqpGi~~~~~~l~~ll~~~dp~L~~hl~~~~i~~~~~~~rW~~~lf~~~~~~~~~~rlWD~~~~~~~~~~~~~~~~~l~~ 80 (188)
T d1fkma2 1 GQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLSETSQEVTSSYSMSSND 80 (188)
T ss_dssp TCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCTHHHHHHHHHTTTGGGSCHHHHHHHHHHHHHHHC-------------
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeeeHHHHHHHhhccCCHHHHHHHHHHHHhCCchhhhhhhhhhhhh
Confidence 47899999999999999999999999999999999999999999999999999999999999997542
Q ss_pred -------------------------------------------------hhHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 006827 543 -------------------------------------------------EHLHLYVCVAILKRYRNKIMGEQMDFDTLLK 573 (630)
Q Consensus 543 -------------------------------------------------~~f~l~valAIL~~~r~~Il~~~~d~deIlk 573 (630)
.+|++|+|+|+|...|+.|+ .++|+++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~A~L~~~r~~Ll--~~df~~~l~ 158 (188)
T d1fkma2 81 IKPPVTPTEPRVASFVTPTKDFQSPTTALSNMTPNNAVEDSGKMRQSSLNEFHVFVCAAFLIKWSDQLM--EMDFQETIT 158 (188)
T ss_dssp -----------------------------------------------CHHHHHHHHHHHHHHHTHHHHT--TCCHHHHHH
T ss_pred hccccccccccchhhhhhccccccccccccccchhhhhhcccccccccchHHHHHHHHHHHHHHHHHHH--HccHHHHHH
Confidence 36899999999999999999 459999999
Q ss_pred HHHhCCCC----CCHHHHHHHHHHHHHhh
Q 006827 574 FINELSGR----IDLDAILRDAEALCICA 598 (630)
Q Consensus 574 ~ln~l~~~----id~~~iL~~A~~L~~~~ 598 (630)
+++++|.. .|++.++.+|+.+...+
T Consensus 159 ~Lq~~P~~~~~~~di~~ll~~A~~~~~~~ 187 (188)
T d1fkma2 159 FLQNPPTKDWTETDIEMLLSEAFIWQSLY 187 (188)
T ss_dssp HHTSCSCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCCCcccHHHHHHHHHHHHHHh
Confidence 99999854 48999999998877653
No 3
>d2hthb1 b.55.1.12 (B:3-131) Vacuolar protein sorting protein 36, VPS36 {Human (Homo sapiens) [TaxId: 9606]}
Probab=95.52 E-value=0.064 Score=45.95 Aligned_cols=95 Identities=21% Similarity=0.238 Sum_probs=67.3
Q ss_pred EEEEeeCCeEEccCccccCCCCccEEEEeeCCceEEEeEecCCCCCCccccccccCcceeeeeeCCceeEEEecCCCCCc
Q 006827 44 ELVYLKDNVTIHPTQFASERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGW 123 (630)
Q Consensus 44 ~Llf~Ks~V~vhPt~~~~d~I~G~L~l~~~~~~~~l~W~P~~~~~~~~~~~~~~~~~y~~~~v~ls~i~si~~~~p~~G~ 123 (630)
.+|+.+++|-++=-......-.|.|-|+.+ -|=|++.... . ..+++||+.|.++..++|.+|-
T Consensus 14 ~~l~~~~~V~lydG~~k~~~~~G~l~LTth----Rli~~~~~~~-----------~--~s~~lpl~~i~~~e~~~~~fg~ 76 (129)
T d2hthb1 14 TLVIQQRGVRIYDGEEKIKFDAGTLLLSTH----RLIWRDQKNH-----------E--CCMAILLSQIVFIEEQAAGIGK 76 (129)
T ss_dssp CEEEEEEEEEEEETTCSSCCCCEEEEEESS----EEEEEETTCC-----------S--CCEEEEGGGEEEEEEECCTTSS
T ss_pred EEEEEeCCEEeecCCCcccccceEEEEEec----eEEEecCCCC-----------c--eEEEEEhHHceeeeEEcccccC
Confidence 688999999886422222234588888744 4788874221 1 2478999999999999998886
Q ss_pred e-EEEEEeC---CCCCCC----------CeeecCCChHHHHHHHHh
Q 006827 124 Q-YIIVVLS---SGLAFP----------PLYFYTGGVREFLATIKQ 155 (630)
Q Consensus 124 ~-~~vl~~~---dG~~~P----------pL~Fh~GG~~~fl~~L~~ 155 (630)
. .++++++ .+...+ -|-|+.||..+|.+.|.+
T Consensus 77 s~ki~l~l~~~~~~~~~gp~~~s~~~~~KLsFk~GG~~eF~~~l~~ 122 (129)
T d2hthb1 77 SAKIVVHLHPAPPNKEPGPFQSSKNSYIKLSFKEHGQIEFYRRLSE 122 (129)
T ss_dssp CCEEEEEECCCCCCSSSCCCSTTSCCEEEEEETTSCHHHHHHHHHH
T ss_pred CceEEEEEccCCcCCcCCCcCcCCceEEEEEECCCCHHHHHHHHHH
Confidence 5 4777764 222222 277999999999999986
No 4
>d2rnrb1 b.55.1.9 (B:1-108) TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=92.35 E-value=0.21 Score=41.08 Aligned_cols=74 Identities=15% Similarity=0.220 Sum_probs=52.9
Q ss_pred CCccEEEEeeCCceEEEeEecCCCCCCccccccccCcceeeeeeCCceeEEEecCCCCCceEEEEEeCCCCCCCCeeecC
Q 006827 64 ISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYT 143 (630)
Q Consensus 64 I~G~L~l~~~~~~~~l~W~P~~~~~~~~~~~~~~~~~y~~~~v~ls~i~si~~~~p~~G~~~~vl~~~dG~~~PpL~Fh~ 143 (630)
.+|.|.|... -|.|+|+... .. ..++++.+|.+.++.|++.-=-=+-|+.++|.++ .|+|-+
T Consensus 20 ~~GtL~l~~d----~l~W~p~~~~----------~~---~v~~~~~~I~~~q~Spe~s~Kv~Lkiv~~~~~s~-~F~Ftn 81 (108)
T d2rnrb1 20 QDGALYLMAE----RIAWAPEGKD----------RF---TISHMYADIKCQKISPEGKAKIQLQLVLHAGDTT-NFHFSN 81 (108)
T ss_dssp CEEEEEECSS----EEEEEESSCS----------SC---SEEEETTTEEEEEECCTTCSSEEEEEEETTSCEE-EEEECC
T ss_pred CCcEEEEEcC----eEEEEcCCCC----------Cc---eEEEEhhhhhceecCCCCcccceeEEEEeCCCeE-EEEECC
Confidence 7899999866 3999996422 11 2579999999999999965544477888999874 677766
Q ss_pred CCh-----HHHHHHHHh
Q 006827 144 GGV-----REFLATIKQ 155 (630)
Q Consensus 144 GG~-----~~fl~~L~~ 155 (630)
... +.+-+.|..
T Consensus 82 ~~~~~~~Rd~iK~~Lq~ 98 (108)
T d2rnrb1 82 ESTAVKERDAVKDLLQQ 98 (108)
T ss_dssp TTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 544 255556654
No 5
>d2caya1 b.55.1.12 (A:1-99,A:252-282) Vacuolar protein sorting protein 36, VPS36 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=87.98 E-value=0.93 Score=38.37 Aligned_cols=96 Identities=13% Similarity=0.172 Sum_probs=66.5
Q ss_pred EEEEeeCCeEEccCcccc-CCCCccEEEEeeCCceEEEeEecCCCCCCccccccccCcceeeeeeCCceeEEEecCCCCC
Q 006827 44 ELVYLKDNVTIHPTQFAS-ERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFG 122 (630)
Q Consensus 44 ~Llf~Ks~V~vhPt~~~~-d~I~G~L~l~~~~~~~~l~W~P~~~~~~~~~~~~~~~~~y~~~~v~ls~i~si~~~~p~~G 122 (630)
.+||..++|-+.=..... ..-.|.|-|+ .--|-|++.... .. ..+++||..|..+...+|.+|
T Consensus 22 ~~l~~qd~V~Ly~g~~k~~~~~~G~l~LT----shRiI~v~~~~~-----------~~-~S~slpL~~i~~~e~~~~~~~ 85 (130)
T d2caya1 22 KDIFIDQSVGLYHGKSKILQRQRGRIFLT----SQRIIYIDDAKP-----------TQ-NSLGLELDDLAYVNYSSGFLT 85 (130)
T ss_dssp CEEEEEEEEEEEETTEECTTCSSEEEEEE----SSEEEEEESSCH-----------HH-HCEEEEGGGEEEEEEECSSSS
T ss_pred EEEEEeCCEEEEECCccCccccCceEEEE----eeEEEEecCCCC-----------ce-eEEEeEhhheeEeEEEccccC
Confidence 678899999886422111 2335666665 336778874321 11 238899999999999999555
Q ss_pred ce-EEEEEeCC---CCCCCCeeecCCChHHHHHHHHh
Q 006827 123 WQ-YIIVVLSS---GLAFPPLYFYTGGVREFLATIKQ 155 (630)
Q Consensus 123 ~~-~~vl~~~d---G~~~PpL~Fh~GG~~~fl~~L~~ 155 (630)
-. =|++.++. +..+=-|-|..||..+|-+++++
T Consensus 86 ss~KI~l~l~~~~~~~~~vklsFr~gg~~~F~~~~~~ 122 (130)
T d2caya1 86 RSPRLILFFKDPSSSTEFVQLSFRKSDGVLFSQATER 122 (130)
T ss_dssp SSCEEEEEESSCSSTTCCEEEEESSSCCHHHHHHHHH
T ss_pred CCCeEEEEeCCCCCCCCEEEEEEcCCChHHHHHHHHH
Confidence 22 27777753 44567789999999999999986
No 6
>d1y5oa1 b.55.1.9 (A:2-115) RNA polymerase II transcription factor B 73 kDa, TFB1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=26.89 E-value=47 Score=26.58 Aligned_cols=55 Identities=13% Similarity=0.275 Sum_probs=40.0
Q ss_pred CCCccEEEEeeCCceEEEeEecCCCCCCccccccccCcceeeeeeCCceeEEEecCCCCCceEEEEEeC
Q 006827 63 RISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLS 131 (630)
Q Consensus 63 ~I~G~L~l~~~~~~~~l~W~P~~~~~~~~~~~~~~~~~y~~~~v~ls~i~si~~~~p~~G~~~~vl~~~ 131 (630)
-.-|.|+|.+....+.+.|.|..+.. ..+|+|++|-.++--|.++-=--+-|+-+
T Consensus 10 KkdG~ltis~D~~~~~~~w~~~~g~~--------------~vti~l~~ItnLQqTP~tspKvmLKI~~k 64 (114)
T d1y5oa1 10 KVSGIIAINEDVSPAELTWRSTDGDK--------------VHTVVLSTIDKLQATPASSEKMMLRLIGK 64 (114)
T ss_dssp SCEEEEEEECSSSSCEEEEEESSSSC--------------EEEEESTTCSEEEECCTTCSSEEEEEEEC
T ss_pred eccceEEEccCCCceEEEeccCCCCc--------------cEEEEhhhhhhhccCCCCCcceEEEEEEe
Confidence 46799999999999999999964321 36799999999997666554332434333
No 7
>d2ijqa1 a.246.2.1 (A:14-158) Hypothetical protein rrnAC1037 {Haloarcula marismortui [TaxId: 2238]}
Probab=24.82 E-value=42 Score=28.14 Aligned_cols=69 Identities=17% Similarity=0.162 Sum_probs=43.6
Q ss_pred HHHHHHHHhhccc--h-----hHHHHHHHHHHHH-HHHHHhcCCCCHHHHHHHHHhCCCC---CCHHHHHHHHHHHHHhh
Q 006827 530 MRLWEVLWTHYLS--E-----HLHLYVCVAILKR-YRNKIMGEQMDFDTLLKFINELSGR---IDLDAILRDAEALCICA 598 (630)
Q Consensus 530 lrLWD~~~~~~~~--~-----~f~l~valAIL~~-~r~~Il~~~~d~deIlk~ln~l~~~---id~~~iL~~A~~L~~~~ 598 (630)
=-+||-+|.+... . +-++.+|+|++.. .+..+-....-+..-+..|...+.. +|++.+...+..+..-.
T Consensus 37 HE~lEe~W~~~~~~~~er~~~QGLIQ~Aaa~~hh~~~gN~~GA~~l~~~al~~L~~~~~~~~Gidv~~l~~~~~~~~~d~ 116 (145)
T d2ijqa1 37 HDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGVPNDYYGVDLLDVRTTVTNALSDP 116 (145)
T ss_dssp HHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTSCTTGGGBCHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCccCCccHHHHHHHHHHHHhch
Confidence 3578888864221 1 2355678887764 3323332222356777788887653 89999999998887633
No 8
>d1icwa_ d.9.1.1 (A:) Interleukin-8, IL-8 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.16 E-value=31 Score=24.95 Aligned_cols=32 Identities=22% Similarity=0.184 Sum_probs=26.2
Q ss_pred eeeeCCceeEEEecCCCCCceE--EEEEeCCCCC
Q 006827 104 RAVPFTEVRSIRRHTPAFGWQY--IIVVLSSGLA 135 (630)
Q Consensus 104 ~~v~ls~i~si~~~~p~~G~~~--~vl~~~dG~~ 135 (630)
..||.+.|.++++-+++.+..- +||.+++|..
T Consensus 12 ~~Ip~~~I~~~~~~~~~~~C~~~aVIf~tk~g~~ 45 (69)
T d1icwa_ 12 KPFHPKFIKELRVIESGPHCANTCIIVKLSDGRE 45 (69)
T ss_dssp SCCCGGGEEEEEEECCSSSCSSCEEEEEETTSCE
T ss_pred CccChhHeeEEEEEeCCCCCCCcEEEEEEcCCCE
Confidence 3599999999998888766643 7999999986
No 9
>d1zsqa1 b.55.1.8 (A:74-198) Myotubularin-related protein 2, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.71 E-value=1.9e+02 Score=22.83 Aligned_cols=94 Identities=9% Similarity=0.033 Sum_probs=56.3
Q ss_pred EEeeCCe-EEccCccccCCCCccEEEEeeCCceEEEeEecCCCCCCccccccccCcceeeeeeCCceeEEEecCC-CCC-
Q 006827 46 VYLKDNV-TIHPTQFASERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTP-AFG- 122 (630)
Q Consensus 46 lf~Ks~V-~vhPt~~~~d~I~G~L~l~~~~~~~~l~W~P~~~~~~~~~~~~~~~~~y~~~~v~ls~i~si~~~~p-~~G- 122 (630)
+..-++| |++|. ...+.|.|.|+ ..-|-..+.+ +..-+...|||.-|-+|....- ..+
T Consensus 12 ~~~~~~V~~~~p~---~~~~~G~L~lT----nyrliF~~~~------------~~~~~~~~ipl~~I~~v~k~~~~~~~~ 72 (125)
T d1zsqa1 12 KDMAKDVTYICPF---TGAVRGTLTVT----NYRLYFKSME------------RDPPFVLDASLGVINRVEKIGGASSRG 72 (125)
T ss_dssp EEEEEEEEEEETT---TEEEEEEEEEE----SSEEEEEESS------------SSSCEEEEEEGGGEEEEEEECCTTCCS
T ss_pred EEeeccEEEEccC---CCccceEEEEE----eeEEEEEcCC------------CCccEEEEeccceeeeeeecccccccC
Confidence 3334444 77773 35689999997 3444444321 1111235799999999975433 111
Q ss_pred --ceEEEEEeCCCCCCCCeeecC-CChHHHHHHHHhhcc
Q 006827 123 --WQYIIVVLSSGLAFPPLYFYT-GGVREFLATIKQHVL 158 (630)
Q Consensus 123 --~~~~vl~~~dG~~~PpL~Fh~-GG~~~fl~~L~~~~~ 158 (630)
-..+.|.+||...+-=-|... .-.+++.+.|.+++.
T Consensus 73 ~~~~~L~I~CKDfr~~~f~f~~e~~~~~~v~~~L~~~a~ 111 (125)
T d1zsqa1 73 ENSYGLETVCKDIRNLRFAHKPEGRTRRSIFENLMKYAF 111 (125)
T ss_dssp TTCSEEEEEETTTEEEEEECCGGGCCHHHHHHHHHHHSC
T ss_pred CccccEEEEeccCeEEEEEEcCCccHHHHHHHHHHHhCc
Confidence 123889999988654333333 233489999998765
No 10
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}
Probab=13.02 E-value=42 Score=30.60 Aligned_cols=35 Identities=14% Similarity=0.323 Sum_probs=28.5
Q ss_pred eeCCceeEEEecCCCC----CceEEEEEeCCCCC----CCCee
Q 006827 106 VPFTEVRSIRRHTPAF----GWQYIIVVLSSGLA----FPPLY 140 (630)
Q Consensus 106 v~ls~i~si~~~~p~~----G~~~~vl~~~dG~~----~PpL~ 140 (630)
||+++|.||++.+|.. =|.-..|.+.||.. +|+.|
T Consensus 167 ~p~~~i~~~~~~~p~~l~d~~w~~~~~~~~~g~~~~~~~p~~y 209 (264)
T d1zbpa1 167 VPIASINTLEIKSATSLLESVWRPVEFDIDGLGEGEGHMPMTY 209 (264)
T ss_dssp EEGGGEEEEEECCCCSSGGGTEEEEEEEETTTEEEEEEEECBC
T ss_pred ecHHHhhhhhcCCCCCHHHHhhhheEEEecCCceeEEEeeeec
Confidence 9999999999999944 37778888898754 57776
Done!