BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 006828
         (629 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2D05|A Chain A, Chitosanase From Bacillus Circulans Mutant K218p
          Length = 259

 Score = 30.4 bits (67), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 3/53 (5%)

Query: 282 KLNEIVLALQKEEKVLCGKILELENSCS--EAMDEKLEMVLEIKALLDQEREK 332
           K+   +L ++  EKV CGKI +L+N  +  +AM E    V  I+  ++Q R++
Sbjct: 108 KMKGSILEIKDSEKVFCGKIKKLQNDAAWRKAMWETFYNVY-IRYSVEQARQR 159


>pdb|1QGI|A Chain A, Chitosanase From Bacillus Circulans
          Length = 259

 Score = 30.4 bits (67), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 3/53 (5%)

Query: 282 KLNEIVLALQKEEKVLCGKILELENSCS--EAMDEKLEMVLEIKALLDQEREK 332
           K+   +L ++  EKV CGKI +L+N  +  +AM E    V  I+  ++Q R++
Sbjct: 108 KMKGSILEIKDSEKVFCGKIKKLQNDAAWRKAMWETFYNVY-IRYSVEQARQR 159


>pdb|3NYX|A Chain A, Non-Phosphorylated Tyk2 Jh1 Domain With
           Quinoline-Thiadiazole- Thiophene Inhibitor
          Length = 302

 Score = 30.4 bits (67), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 32/75 (42%), Gaps = 10/75 (13%)

Query: 358 DDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDV----VFKLKASCRDQQDKS 413
           +D  GE+  +   K D      C     SG  +EI  LR +    + K K  C DQ +KS
Sbjct: 39  NDGTGEMVAVKALKAD------CGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDQGEKS 92

Query: 414 KQLVNELADYKSALD 428
            QLV E     S  D
Sbjct: 93  LQLVMEYVPLGSLRD 107


>pdb|3NZ0|A Chain A, Non-Phosphorylated Tyk2 Kinase With Cmp6
          Length = 302

 Score = 30.4 bits (67), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 32/75 (42%), Gaps = 10/75 (13%)

Query: 358 DDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDV----VFKLKASCRDQQDKS 413
           +D  GE+  +   K D      C     SG  +EI  LR +    + K K  C DQ +KS
Sbjct: 39  NDGTGEMVAVKALKAD------CGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDQGEKS 92

Query: 414 KQLVNELADYKSALD 428
            QLV E     S  D
Sbjct: 93  LQLVMEYVPLGSLRD 107


>pdb|1MG2|A Chain A, Mutation Of Alpha Phe55 Of Methylamine Dehydrogenase
           Alters The Reorganization Energy And Electronic Coupling
           For Its Electron Transfer Reaction With Amicyanin
 pdb|1MG2|E Chain E, Mutation Of Alpha Phe55 Of Methylamine Dehydrogenase
           Alters The Reorganization Energy And Electronic Coupling
           For Its Electron Transfer Reaction With Amicyanin
 pdb|1MG2|I Chain I, Mutation Of Alpha Phe55 Of Methylamine Dehydrogenase
           Alters The Reorganization Energy And Electronic Coupling
           For Its Electron Transfer Reaction With Amicyanin
 pdb|1MG2|M Chain M, Mutation Of Alpha Phe55 Of Methylamine Dehydrogenase
           Alters The Reorganization Energy And Electronic Coupling
           For Its Electron Transfer Reaction With Amicyanin
 pdb|1MG3|A Chain A, Mutation Of Alpha Phe55 Of Methylamine Dehydrogenase
           Alters The Reorganization Energy And Electronic Coupling
           For Its Electron Transfer Reaction With Amicyanin
 pdb|1MG3|E Chain E, Mutation Of Alpha Phe55 Of Methylamine Dehydrogenase
           Alters The Reorganization Energy And Electronic Coupling
           For Its Electron Transfer Reaction With Amicyanin
 pdb|1MG3|I Chain I, Mutation Of Alpha Phe55 Of Methylamine Dehydrogenase
           Alters The Reorganization Energy And Electronic Coupling
           For Its Electron Transfer Reaction With Amicyanin
 pdb|1MG3|M Chain M, Mutation Of Alpha Phe55 Of Methylamine Dehydrogenase
           Alters The Reorganization Energy And Electronic Coupling
           For Its Electron Transfer Reaction With Amicyanin
          Length = 390

 Score = 30.0 bits (66), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 335 RIERLIEEKDEISHRL-EKAVVVLDDKEGEIAKLLREKNDIEERKVCQD 382
           RI  L++++DE  H+   + VVVLD K GE        ++I+   V QD
Sbjct: 297 RIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQD 345


>pdb|3PXW|D Chain D, Crystal Structure Of Ferrous No Adduct Of Maug In Complex
           With Pre- Methylamine Dehydrogenase
 pdb|3PXW|F Chain F, Crystal Structure Of Ferrous No Adduct Of Maug In Complex
           With Pre- Methylamine Dehydrogenase
 pdb|3SLE|D Chain D, Crystal Structure Of The P107c-MaugPRE-Methylamine
           Dehydrogenase Complex
 pdb|3SLE|F Chain F, Crystal Structure Of The P107c-MaugPRE-Methylamine
           Dehydrogenase Complex
          Length = 385

 Score = 30.0 bits (66), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 335 RIERLIEEKDEISHRL-EKAVVVLDDKEGEIAKLLREKNDIEERKVCQD 382
           RI  L++++DE  H+   + VVVLD K GE        ++I+   V QD
Sbjct: 292 RIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQD 340


>pdb|2GC4|A Chain A, Structural Comparison Of The Oxidized Ternary Electron
           Transfer Complex Of Methylamine Dehydrogenase, Amicyanin
           And Cytochrome C551i From Paracoccus Denitrificans With
           The Substrate-Reduced, Copper Free Complex At 1.9 A
           Resolution.
 pdb|2GC4|E Chain E, Structural Comparison Of The Oxidized Ternary Electron
           Transfer Complex Of Methylamine Dehydrogenase, Amicyanin
           And Cytochrome C551i From Paracoccus Denitrificans With
           The Substrate-Reduced, Copper Free Complex At 1.9 A
           Resolution.
 pdb|2GC4|I Chain I, Structural Comparison Of The Oxidized Ternary Electron
           Transfer Complex Of Methylamine Dehydrogenase, Amicyanin
           And Cytochrome C551i From Paracoccus Denitrificans With
           The Substrate-Reduced, Copper Free Complex At 1.9 A
           Resolution.
 pdb|2GC4|M Chain M, Structural Comparison Of The Oxidized Ternary Electron
           Transfer Complex Of Methylamine Dehydrogenase, Amicyanin
           And Cytochrome C551i From Paracoccus Denitrificans With
           The Substrate-Reduced, Copper Free Complex At 1.9 A
           Resolution.
 pdb|2GC7|A Chain A, Substrate Reduced, Copper Free Complex Of Methylamine
           Dehydrogenase, Amicyanin And Cytochrome C551i From
           Paracoccus Denitrificans.
 pdb|2GC7|E Chain E, Substrate Reduced, Copper Free Complex Of Methylamine
           Dehydrogenase, Amicyanin And Cytochrome C551i From
           Paracoccus Denitrificans.
 pdb|2GC7|I Chain I, Substrate Reduced, Copper Free Complex Of Methylamine
           Dehydrogenase, Amicyanin And Cytochrome C551i From
           Paracoccus Denitrificans.
 pdb|2GC7|M Chain M, Substrate Reduced, Copper Free Complex Of Methylamine
           Dehydrogenase, Amicyanin And Cytochrome C551i From
           Paracoccus Denitrificans.
 pdb|2J55|H Chain H, X-Ray Reduced Paraccocus Denitrificans Methylamine
           Dehydrogenase O-Quinone In Complex With Amicyanin.
 pdb|2J55|J Chain J, X-Ray Reduced Paraccocus Denitrificans Methylamine
           Dehydrogenase O-Quinone In Complex With Amicyanin.
 pdb|2J56|H Chain H, X-Ray Reduced Paraccocus Denitrificans Methylamine
           Dehydrogenase N-Semiquinone In Complex With Amicyanin.
 pdb|2J56|J Chain J, X-Ray Reduced Paraccocus Denitrificans Methylamine
           Dehydrogenase N-Semiquinone In Complex With Amicyanin.
 pdb|2J57|G Chain G, X-Ray Reduced Paraccocus Denitrificans Methylamine
           Dehydrogenase N-Quinol In Complex With Amicyanin.
 pdb|2J57|H Chain H, X-Ray Reduced Paraccocus Denitrificans Methylamine
           Dehydrogenase N-Quinol In Complex With Amicyanin.
 pdb|2J57|I Chain I, X-Ray Reduced Paraccocus Denitrificans Methylamine
           Dehydrogenase N-Quinol In Complex With Amicyanin.
 pdb|2J57|J Chain J, X-Ray Reduced Paraccocus Denitrificans Methylamine
           Dehydrogenase N-Quinol In Complex With Amicyanin.
 pdb|3L4M|D Chain D, Crystal Structure Of The MaugPRE-Methylamine Dehydrogenase
           Complex.
 pdb|3L4M|F Chain F, Crystal Structure Of The MaugPRE-Methylamine Dehydrogenase
           Complex.
 pdb|3L4O|D Chain D, Crystal Structure Of The MaugPRE-Methylamine Dehydrogenase
           Complex After Treatment With Hydrogen Peroxide
 pdb|3L4O|F Chain F, Crystal Structure Of The MaugPRE-Methylamine Dehydrogenase
           Complex After Treatment With Hydrogen Peroxide
 pdb|3ORV|D Chain D, Crystal Structure Of The Y294h-MaugPRE-Methylamine
           Dehydrogenase Complex
 pdb|3ORV|F Chain F, Crystal Structure Of The Y294h-MaugPRE-Methylamine
           Dehydrogenase Complex
 pdb|3PXS|D Chain D, Crystal Structure Of Diferrous Maug In Complex With
           Pre-Methylamine Dehydrogenase:
 pdb|3PXS|F Chain F, Crystal Structure Of Diferrous Maug In Complex With
           Pre-Methylamine Dehydrogenase:
 pdb|3PXT|D Chain D, Crystal Structure Of Ferrous Co Adduct Of Maug In Complex
           With Pre- Methylamine Dehydrogenase
 pdb|3PXT|F Chain F, Crystal Structure Of Ferrous Co Adduct Of Maug In Complex
           With Pre- Methylamine Dehydrogenase
 pdb|3RLM|D Chain D, Structure Of The W199f MaugPRE-Methylamine Dehydrogenase
           Complex After Treatment With Hydrogen Peroxide
 pdb|3RLM|F Chain F, Structure Of The W199f MaugPRE-Methylamine Dehydrogenase
           Complex After Treatment With Hydrogen Peroxide
 pdb|3RMZ|D Chain D, Crystal Structure Of The W199f-MaugPRE-Methylamine
           Dehydrogenase Complex
 pdb|3RMZ|F Chain F, Crystal Structure Of The W199f-MaugPRE-Methylamine
           Dehydrogenase Complex
 pdb|3RN0|D Chain D, Crystal Structure Of The W199k-MaugPRE-Methylamine
           Dehydrogenase Complex
 pdb|3RN0|F Chain F, Crystal Structure Of The W199k-MaugPRE-Methylamine
           Dehydrogenase Complex
 pdb|3RN1|D Chain D, Crystal Structure Of The W199e-MaugPRE-Methylamine
           Dehydrogenase Complex
 pdb|3RN1|F Chain F, Crystal Structure Of The W199e-MaugPRE-Methylamine
           Dehydrogenase Complex
 pdb|3SJL|D Chain D, Crystal Structure Of The P107s-MaugPRE-Methylamine
           Dehydrogenase Complex
 pdb|3SJL|F Chain F, Crystal Structure Of The P107s-MaugPRE-Methylamine
           Dehydrogenase Complex
 pdb|3SVW|D Chain D, Crystal Structure Of The P107v-MaugPRE-Methylamine
           Dehydrogenase Complex
 pdb|3SVW|F Chain F, Crystal Structure Of The P107v-MaugPRE-Methylamine
           Dehydrogenase Complex
 pdb|3SWS|D Chain D, Crystal Structure Of The Quinone Form Of Methylamine
           Dehydrogenase In Complex With The Diferric Form Of Maug
 pdb|3SWS|F Chain F, Crystal Structure Of The Quinone Form Of Methylamine
           Dehydrogenase In Complex With The Diferric Form Of Maug
 pdb|3SXT|D Chain D, Crystal Structure Of The Quinol Form Of Methylamine
           Dehydrogenase In Complex With The Diferrous Form Of Maug
 pdb|3SXT|F Chain F, Crystal Structure Of The Quinol Form Of Methylamine
           Dehydrogenase In Complex With The Diferrous Form Of Maug
          Length = 386

 Score = 30.0 bits (66), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 335 RIERLIEEKDEISHRL-EKAVVVLDDKEGEIAKLLREKNDIEERKVCQD 382
           RI  L++++DE  H+   + VVVLD K GE        ++I+   V QD
Sbjct: 293 RIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQD 341


>pdb|2BBK|H Chain H, Crystal Structure Of The Quinoprotein Methylamine
           Dehydrogenase From Paracoccus Denitrificans At 1.75
           Angstroms
 pdb|2BBK|J Chain J, Crystal Structure Of The Quinoprotein Methylamine
           Dehydrogenase From Paracoccus Denitrificans At 1.75
           Angstroms
          Length = 355

 Score = 30.0 bits (66), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 335 RIERLIEEKDEISHRL-EKAVVVLDDKEGEIAKLLREKNDIEERKVCQD 382
           RI  L++++DE  H+   + VVVLD K GE        ++I+   V QD
Sbjct: 262 RIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQD 310


>pdb|1WID|A Chain A, Solution Structure Of The B3 Dna-Binding Domain Of Rav1
          Length = 130

 Score = 29.3 bits (64), Expect = 7.4,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 201 SEILVLQSDYGRLKKEKNERDGDIEAFKKEKG 232
           S+  VL   + R  KEKN R GD+ +F +  G
Sbjct: 74  SQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNG 105


>pdb|4E20|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole
           Inhibitor
          Length = 290

 Score = 28.9 bits (63), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 4/53 (7%)

Query: 380 CQDNEISGLHKEIGELRDV----VFKLKASCRDQQDKSKQLVNELADYKSALD 428
           C     SG  +EI  LR +    + K K  C DQ +KS QLV E     S  D
Sbjct: 49  CGPQLRSGWQREIEILRTLYHEHIVKYKGCCEDQGEKSVQLVMEYVPLGSLRD 101


>pdb|4E1Z|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole
           Inhibitor
          Length = 291

 Score = 28.9 bits (63), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 4/53 (7%)

Query: 380 CQDNEISGLHKEIGELRDV----VFKLKASCRDQQDKSKQLVNELADYKSALD 428
           C     SG  +EI  LR +    + K K  C DQ +KS QLV E     S  D
Sbjct: 50  CGPQLRSGWQREIEILRTLYHEHIVKYKGCCEDQGEKSVQLVMEYVPLGSLRD 102


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.310    0.127    0.328 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,036,612
Number of Sequences: 62578
Number of extensions: 569080
Number of successful extensions: 2010
Number of sequences better than 100.0: 78
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 1923
Number of HSP's gapped (non-prelim): 130
length of query: 629
length of database: 14,973,337
effective HSP length: 105
effective length of query: 524
effective length of database: 8,402,647
effective search space: 4402987028
effective search space used: 4402987028
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 54 (25.4 bits)