BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 006828
         (629 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P02566|MYO4_CAEEL Myosin-4 OS=Caenorhabditis elegans GN=unc-54 PE=4 SV=1
          Length = 1966

 Score = 40.4 bits (93), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 92/193 (47%), Gaps = 23/193 (11%)

Query: 333  QKRIERLIEEKDEISHRLEKAVVVLDDKEGEIAKLLREKNDIEERKVCQDNEISGLHKE- 391
            Q+ +E L E+ DE        V V   +E E+AKL R   D+EE  +  +N++ GL K+ 
Sbjct: 1152 QRELEELGEKLDEQGGATAAQVEVNKKREAELAKLRR---DLEEANMNHENQLGGLRKKH 1208

Query: 392  ---IGELRDVVFKL-KASCRDQQDKSKQLVNELADYKSALDQATLERDNAWKDLDEQRKS 447
               + EL D + +L KA  + ++DK+ Q V +  D  + LDQ T  + N         K 
Sbjct: 1209 TDAVAELTDQLDQLNKAKAKVEKDKA-QAVRDAEDLAAQLDQETSGKLN-------NEKL 1260

Query: 448  GMDLRLKLSEMEKRFEEKVEEL-------AKTRNERETLVDLRKKMESHIGLLAEEKELM 500
                 L+L+E++ + +E+  +L        +  +E   LV   +  ES +  L   K  +
Sbjct: 1261 AKQFELQLTELQSKADEQSRQLQDFTSLKGRLHSENGDLVRQLEDAESQVNQLTRLKSQL 1320

Query: 501  QKNLLEAKRNADD 513
               L EA+R AD+
Sbjct: 1321 TSQLEEARRTADE 1333


>sp|Q6P5D4|CP135_MOUSE Centrosomal protein of 135 kDa OS=Mus musculus GN=Cep135 PE=1 SV=1
          Length = 1140

 Score = 34.7 bits (78), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 101/218 (46%), Gaps = 29/218 (13%)

Query: 59   VHRSHEQRQQVESLSQAKAALEAELSLFGVEKSELLAELSGESDQKVSLEIEKGLFCVFL 118
            ++  H    Q+ S+++A + LE EL     EK+ +L ++S   +  + L+  K +    L
Sbjct: 936  INAHHAYESQISSMAKAMSQLEEELRRHESEKATMLGDVSSLRELCIKLDSGKDVMTQQL 995

Query: 119  MTQMKEMGEGLDEEKNERENEIIALKSEVSGLMGNIENER------ERLSQACREKD--- 169
             ++  E+   + E +N        +KSE   L   + NER      E L    R+K+   
Sbjct: 996  NSKSLELERAVAELEN--------VKSESELLKKQLTNERQTIKNLESLLATNRDKEFQS 1047

Query: 170  -LMKGELDCQV---KEASRLKDRLIEMEGKERN-LRSEILVLQSDYGRLKKEKNERDGDI 224
             L   E D ++   KE   L +  +  + +E + LR+++  LQ+DY  LK++ +      
Sbjct: 1048 HLTSHEKDTEIQLLKEKLNLSESKLTTQSRETSMLRTKVTQLQTDYDNLKRQMSN----- 1102

Query: 225  EAFKKEKGLLGKRLVGLEKETDDLKLKIKVIVKEKNAI 262
            E +++E+ +   R +GL   T  L   +K  V+  + I
Sbjct: 1103 EKYERERAIQEMRRLGL--PTSPLSSTLKSPVQTPDHI 1138


>sp|Q9BMQ6|MYSP_OPIFE Paramyosin (Fragment) OS=Opisthorchis felineus PE=2 SV=1
          Length = 638

 Score = 34.3 bits (77), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 74/326 (22%), Positives = 155/326 (47%), Gaps = 25/326 (7%)

Query: 50  RLKSLNDLLVHRSHEQRQQVESLSQAKAALEAELSLFGVEKSELLAELSGESDQKVSLEI 109
           RL S N  L+H + E   QV +LS+++++LE+ +        +L   L  E+  + +L+ 
Sbjct: 176 RLTSENFELLHANQEYEAQVLNLSKSRSSLESAVD-------DLKRSLDDEAKSRFNLQA 228

Query: 110 EKGLFCVFLMTQMKEMGEGLDEEKNERENEIIALKSEVSGLMGNIENERERLSQACREKD 169
           +        +T ++   + L  +  E   E   L+++VS    ++   + +      E++
Sbjct: 229 Q--------LTSLQMDYDNLQAKYEEESEEASNLRNQVSKFNADLAAMKSKF-----ERE 275

Query: 170 LM-KGELDCQVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKNERDGDIEAFK 228
           LM K E   ++K   +L  R+ E+E      R+    L+    +L  E  +   ++++  
Sbjct: 276 LMSKTEEYEELKR--KLTLRITELEDTAERERARASNLEKIKAKLTIEIKDLQNEVDSLS 333

Query: 229 KEKGLLGKRLVGLEKETDDLKLKIKVIVKEKNAIEMQNSEQKVINDELEKEVNKLNEIVL 288
            E   L +R    E   +DL+ ++  +  E N +  QNS+ +  N  L+ +VN L +   
Sbjct: 334 AENAELARRAKAAENLANDLQRRVDELTIEINNLHSQNSQLEAENMRLKSQVNDLVDKNA 393

Query: 289 ALQKEEKVLCGKILELENSCSEAMDEKLEMVLEIKALLDQEREKQKRIERLIEEK-DEIS 347
           AL +E + L  ++ +L+++  +A + +L  +  +++ L+ ER+         EE   E+ 
Sbjct: 394 ALDRENRQLSDQVKDLKSTLRDA-NRRLTDLEALRSQLEAERDNLASALHDAEEALREVD 452

Query: 348 HRLEKAVVVLDDKEGEIAKLLREKND 373
            + + A   L+  + E+ + LREK++
Sbjct: 453 QKYQNAQAALNHLKSEMEQRLREKDE 478


>sp|Q05870|MYSP_SCHJA Paramyosin OS=Schistosoma japonicum PE=2 SV=2
          Length = 866

 Score = 33.5 bits (75), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 125/271 (46%), Gaps = 39/271 (14%)

Query: 50  RLKSLNDLLVHRSHEQRQQVESLSQAKAALEAELSLFGVEKSELLAELSGESDQKVSLEI 109
           RL S N  L+H + +   Q+ + S+AK++LE+++        +L   L  ES  + +L+ 
Sbjct: 195 RLTSENFELLHINQDYEAQILNYSKAKSSLESQVD-------DLKRSLDDESRNRFNLQA 247

Query: 110 EKGLFCVFLMTQMKEMGEGLDEEKNERENEIIALKSEVSGLMGNI-----ENERERLSQA 164
           +       L      +    DEE  E  N    L+++VS    +I     + ERE +S+ 
Sbjct: 248 Q----LTSLQMDYDNLQAKYDEESEEASN----LRNQVSKFNADIAALKSKFERELMSK- 298

Query: 165 CREKDLMKGELDCQVKE----ASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKNER 220
             E + MK +L  ++ E    A R + + + +E  +  L  EI  LQS+           
Sbjct: 299 TEEFEEMKRKLTMRITELEDVAERERLKAVSLEKLKTKLTLEIKDLQSE----------- 347

Query: 221 DGDIEAFKKEKGLLGKRLVGLEKETDDLKLKIKVIVKEKNAIEMQNSEQKVINDELEKEV 280
              IE+   E G L +R    E    +L+ ++  +  E N +  QN++ +  N  L+  V
Sbjct: 348 ---IESLSLENGELIRRAKSAESLASELQRRVDELTIEVNTLTSQNNQLESENMRLKSLV 404

Query: 281 NKLNEIVLALQKEEKVLCGKILELENSCSEA 311
           N L +   AL++E + +  ++ EL++S  +A
Sbjct: 405 NDLTDKNNALERENRQMNDQVKELKSSLRDA 435


>sp|Q86VS8|HOOK3_HUMAN Protein Hook homolog 3 OS=Homo sapiens GN=HOOK3 PE=1 SV=2
          Length = 718

 Score = 32.7 bits (73), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 90/178 (50%), Gaps = 26/178 (14%)

Query: 174 ELDCQVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKNERDGDIEAFKKEKGL 233
           EL+ ++ E  +  D L  +  + ++L+ EI VL+    ++ K     +G +E++KK+   
Sbjct: 274 ELEKEISELRQQNDELTTLADEAQSLKDEIDVLRHSSDKVSK----LEGQVESYKKKLED 329

Query: 234 LGKRLVGLEKETDDLKLKIKVIVKEKNAIEMQNSEQKVINDELEKEVNKLNEIVLALQKE 293
           LG           DL+ ++K++ +EKN + MQN+        LE+E+ K N    A + +
Sbjct: 330 LG-----------DLRRQVKLL-EEKNTMYMQNTVS------LEEELRKAN----AARSQ 367

Query: 294 EKVLCGKILELENSCSEAMDEKLEMVLEIKALLDQEREKQKRIERLIEEKDEISHRLE 351
            +    +++EL+N  SE   +  ++  E K L ++    QK  +RL  E+D +   +E
Sbjct: 368 LETYKRQVVELQNRLSEESKKADKLDFEYKRLKEKVDSLQKEKDRLRTERDSLKETIE 425


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.310    0.127    0.328 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 209,182,799
Number of Sequences: 539616
Number of extensions: 9152693
Number of successful extensions: 71787
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 3700
Number of HSP's that attempted gapping in prelim test: 47952
Number of HSP's gapped (non-prelim): 13002
length of query: 629
length of database: 191,569,459
effective HSP length: 124
effective length of query: 505
effective length of database: 124,657,075
effective search space: 62951822875
effective search space used: 62951822875
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 64 (29.3 bits)