Query 006828
Match_columns 629
No_of_seqs 290 out of 489
Neff 7.6
Searched_HMMs 46136
Date Thu Mar 28 15:04:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006828.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006828hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02168 SMC_prok_B chromosom 99.9 2E-16 4.3E-21 194.3 69.2 70 508-578 964-1042(1179)
2 COG1196 Smc Chromosome segrega 99.9 2.5E-15 5.3E-20 183.3 73.6 73 506-578 946-1023(1163)
3 TIGR02169 SMC_prok_A chromosom 99.8 3.1E-14 6.6E-19 175.1 73.9 75 504-578 953-1032(1164)
4 TIGR02168 SMC_prok_B chromosom 99.8 2.9E-15 6.2E-20 184.1 49.8 345 136-500 668-1019(1179)
5 COG1196 Smc Chromosome segrega 99.8 3.9E-14 8.5E-19 172.9 52.5 59 443-501 946-1004(1163)
6 TIGR02169 SMC_prok_A chromosom 99.7 1.6E-13 3.5E-18 168.8 52.0 165 336-501 849-1013(1164)
7 KOG0161 Myosin class II heavy 99.7 1.7E-11 3.6E-16 150.0 68.0 84 94-177 789-884 (1930)
8 PRK02224 chromosome segregatio 99.7 2.1E-10 4.5E-15 137.5 68.6 87 485-572 650-741 (880)
9 PRK04778 septation ring format 99.7 2.9E-11 6.3E-16 137.2 52.0 74 500-579 446-525 (569)
10 PRK02224 chromosome segregatio 99.7 1.1E-09 2.4E-14 131.2 68.4 42 504-545 622-664 (880)
11 KOG0161 Myosin class II heavy 99.6 2.5E-08 5.4E-13 122.9 69.9 65 42-106 911-975 (1930)
12 PRK03918 chromosome segregatio 99.6 5E-08 1.1E-12 117.1 72.0 114 440-559 564-693 (880)
13 PRK03918 chromosome segregatio 99.5 1.3E-07 2.9E-12 113.5 66.9 40 475-514 660-699 (880)
14 PRK04778 septation ring format 99.5 1.5E-08 3.2E-13 115.3 53.6 118 380-498 380-507 (569)
15 TIGR00606 rad50 rad50. This fa 99.5 3.2E-07 6.9E-12 114.1 69.7 146 466-614 990-1157(1311)
16 PF10174 Cast: RIM-binding pro 99.5 3.1E-07 6.6E-12 105.9 61.4 44 481-524 465-508 (775)
17 TIGR00606 rad50 rad50. This fa 99.4 8.9E-07 1.9E-11 110.2 65.0 52 445-498 1027-1078(1311)
18 PRK01156 chromosome segregatio 99.4 2.5E-06 5.4E-11 102.7 65.0 46 500-545 641-692 (895)
19 PRK01156 chromosome segregatio 99.4 5.8E-06 1.3E-10 99.6 68.1 81 440-520 644-727 (895)
20 KOG4674 Uncharacterized conser 99.3 7.1E-06 1.5E-10 100.2 65.5 84 438-521 404-487 (1822)
21 KOG0964 Structural maintenance 99.3 4.6E-06 1E-10 94.9 64.5 74 505-578 952-1030(1200)
22 KOG4674 Uncharacterized conser 99.3 3.7E-06 7.9E-11 102.6 61.0 458 128-598 24-498 (1822)
23 PF10174 Cast: RIM-binding pro 99.3 8.5E-06 1.8E-10 94.2 64.9 56 42-97 110-165 (775)
24 PF05701 WEMBL: Weak chloropla 99.3 6.6E-06 1.4E-10 92.6 62.9 204 380-600 306-521 (522)
25 KOG4643 Uncharacterized coiled 99.1 4E-05 8.7E-10 87.7 51.3 154 366-523 405-558 (1195)
26 KOG0933 Structural maintenance 99.1 1.7E-05 3.6E-10 90.8 46.8 184 336-578 845-1040(1174)
27 KOG0996 Structural maintenance 99.1 0.00013 2.8E-09 85.1 66.4 69 510-578 1079-1152(1293)
28 KOG0996 Structural maintenance 99.0 0.00016 3.5E-09 84.3 66.9 98 444-542 804-922 (1293)
29 PF01576 Myosin_tail_1: Myosin 99.0 4.4E-11 9.5E-16 141.1 0.0 486 63-560 134-672 (859)
30 KOG0964 Structural maintenance 99.0 0.00015 3.3E-09 82.9 60.7 192 58-284 178-369 (1200)
31 KOG0933 Structural maintenance 99.0 0.00017 3.8E-09 82.8 52.8 334 112-460 126-469 (1174)
32 PF01576 Myosin_tail_1: Myosin 99.0 1.2E-10 2.6E-15 137.5 0.0 553 41-598 224-815 (859)
33 KOG0250 DNA repair protein RAD 98.9 0.00036 7.8E-09 81.5 62.0 181 81-264 228-422 (1074)
34 PF05701 WEMBL: Weak chloropla 98.9 0.00028 6.1E-09 79.6 62.3 115 56-174 37-152 (522)
35 PF07888 CALCOCO1: Calcium bin 98.9 0.00035 7.6E-09 77.2 45.9 38 484-521 420-457 (546)
36 PRK04863 mukB cell division pr 98.8 0.00057 1.2E-08 85.0 51.2 143 137-294 278-420 (1486)
37 KOG0971 Microtubule-associated 98.8 0.00022 4.7E-09 80.9 42.4 318 140-468 233-554 (1243)
38 PF12128 DUF3584: Protein of u 98.8 0.0018 3.9E-08 80.3 70.4 46 479-524 723-769 (1201)
39 PF00261 Tropomyosin: Tropomyo 98.8 1.2E-05 2.5E-10 81.5 29.7 54 361-414 175-228 (237)
40 PF07888 CALCOCO1: Calcium bin 98.7 0.00086 1.9E-08 74.2 47.7 21 301-321 292-312 (546)
41 KOG0976 Rho/Rac1-interacting s 98.7 0.0013 2.7E-08 73.9 52.6 141 444-595 321-469 (1265)
42 PF06160 EzrA: Septation ring 98.6 0.0034 7.3E-08 71.6 51.6 84 440-523 352-435 (560)
43 KOG0250 DNA repair protein RAD 98.6 0.0045 9.8E-08 72.6 64.4 245 112-359 198-461 (1074)
44 KOG0976 Rho/Rac1-interacting s 98.6 0.0034 7.3E-08 70.7 55.6 78 347-424 329-406 (1265)
45 PF00038 Filament: Intermediat 98.5 0.003 6.5E-08 66.7 40.2 32 469-500 271-302 (312)
46 KOG0971 Microtubule-associated 98.5 0.006 1.3E-07 69.7 41.6 46 356-401 498-543 (1243)
47 KOG0977 Nuclear envelope prote 98.5 0.0024 5.2E-08 70.8 37.9 44 464-507 346-389 (546)
48 COG0419 SbcC ATPase involved i 98.4 0.012 2.7E-07 71.1 67.2 27 111-137 142-168 (908)
49 PF00038 Filament: Intermediat 98.4 0.0043 9.4E-08 65.4 42.6 109 137-245 3-112 (312)
50 PF12128 DUF3584: Protein of u 98.4 0.018 3.9E-07 71.6 73.4 97 296-392 604-701 (1201)
51 KOG0018 Structural maintenance 98.4 0.0055 1.2E-07 71.6 39.4 27 128-154 133-159 (1141)
52 PHA02562 46 endonuclease subun 98.4 0.00036 7.9E-09 79.7 30.1 25 129-153 141-165 (562)
53 KOG4643 Uncharacterized coiled 98.3 0.016 3.4E-07 67.3 52.6 52 46-104 170-221 (1195)
54 PHA02562 46 endonuclease subun 98.3 0.0024 5.2E-08 72.9 35.2 24 111-134 138-161 (562)
55 KOG0977 Nuclear envelope prote 98.3 0.0048 1E-07 68.5 35.1 43 181-223 36-78 (546)
56 COG0419 SbcC ATPase involved i 98.3 0.029 6.3E-07 67.9 72.6 14 506-519 658-671 (908)
57 KOG0978 E3 ubiquitin ligase in 98.2 0.02 4.3E-07 65.3 58.1 164 361-524 460-623 (698)
58 PRK04863 mukB cell division pr 98.2 0.05 1.1E-06 68.2 58.7 42 483-524 560-601 (1486)
59 COG1340 Uncharacterized archae 98.1 0.018 3.8E-07 59.1 36.3 52 360-411 191-242 (294)
60 PF09730 BicD: Microtubule-ass 98.0 0.059 1.3E-06 62.2 48.8 56 160-215 35-90 (717)
61 PF05557 MAD: Mitotic checkpoi 98.0 2.5E-05 5.5E-10 91.6 11.1 57 370-426 372-428 (722)
62 PF15070 GOLGA2L5: Putative go 98.0 0.065 1.4E-06 61.4 48.6 263 336-598 176-500 (617)
63 PRK11637 AmiB activator; Provi 98.0 0.011 2.4E-07 65.2 30.1 65 347-411 183-247 (428)
64 KOG4673 Transcription factor T 97.9 0.065 1.4E-06 59.9 47.5 40 138-177 346-385 (961)
65 KOG0612 Rho-associated, coiled 97.9 0.11 2.3E-06 62.0 44.3 18 17-34 386-403 (1317)
66 PF09726 Macoilin: Transmembra 97.9 0.0076 1.7E-07 69.8 28.1 109 356-464 546-661 (697)
67 KOG0946 ER-Golgi vesicle-tethe 97.9 0.02 4.4E-07 65.0 29.9 31 441-471 920-950 (970)
68 PF05483 SCP-1: Synaptonemal c 97.8 0.098 2.1E-06 58.8 69.6 157 440-603 521-690 (786)
69 PF06160 EzrA: Septation ring 97.8 0.12 2.6E-06 59.0 51.5 65 87-151 24-91 (560)
70 KOG0946 ER-Golgi vesicle-tethe 97.8 0.037 8.1E-07 63.0 30.3 40 484-523 900-939 (970)
71 PF05557 MAD: Mitotic checkpoi 97.8 0.00028 6E-09 83.0 14.0 35 465-499 501-535 (722)
72 KOG1003 Actin filament-coating 97.7 0.045 9.8E-07 52.4 26.1 45 438-482 157-201 (205)
73 KOG1029 Endocytic adaptor prot 97.7 0.16 3.4E-06 57.8 36.5 96 254-349 420-515 (1118)
74 PF09726 Macoilin: Transmembra 97.7 0.052 1.1E-06 63.1 31.0 32 186-217 445-476 (697)
75 COG1579 Zn-ribbon protein, pos 97.7 0.015 3.3E-07 58.3 23.1 67 242-308 16-82 (239)
76 KOG0994 Extracellular matrix g 97.7 0.23 5E-06 58.7 41.2 63 39-101 1201-1280(1758)
77 KOG0994 Extracellular matrix g 97.7 0.24 5.1E-06 58.6 40.2 30 123-152 1414-1443(1758)
78 KOG0995 Centromere-associated 97.6 0.17 3.6E-06 56.1 43.9 87 178-264 271-360 (581)
79 PF14662 CCDC155: Coiled-coil 97.6 0.071 1.5E-06 51.3 27.4 82 336-417 104-185 (193)
80 PF05622 HOOK: HOOK protein; 97.6 1.3E-05 2.7E-10 94.0 0.0 41 554-595 609-649 (713)
81 KOG0018 Structural maintenance 97.6 0.28 6.1E-06 57.9 61.5 205 384-598 653-879 (1141)
82 KOG1029 Endocytic adaptor prot 97.6 0.22 4.8E-06 56.6 35.7 48 359-406 539-586 (1118)
83 KOG0995 Centromere-associated 97.6 0.19 4.2E-06 55.6 42.0 20 101-120 88-108 (581)
84 KOG4673 Transcription factor T 97.5 0.28 6.1E-06 55.1 59.9 91 475-572 856-954 (961)
85 COG1579 Zn-ribbon protein, pos 97.5 0.029 6.2E-07 56.3 21.8 23 556-578 166-188 (239)
86 PF05622 HOOK: HOOK protein; 97.4 2.9E-05 6.3E-10 90.9 0.0 8 537-544 688-695 (713)
87 PRK09039 hypothetical protein; 97.4 0.031 6.7E-07 59.7 22.0 62 116-177 31-92 (343)
88 PF05667 DUF812: Protein of un 97.4 0.47 1E-05 54.3 32.5 31 398-428 506-537 (594)
89 TIGR03185 DNA_S_dndD DNA sulfu 97.3 0.55 1.2E-05 54.8 36.6 96 441-536 393-492 (650)
90 PF15070 GOLGA2L5: Putative go 97.3 0.58 1.3E-05 53.8 49.3 19 275-293 164-182 (617)
91 PF14662 CCDC155: Coiled-coil 97.3 0.2 4.2E-06 48.3 27.7 124 163-290 19-142 (193)
92 PF15619 Lebercilin: Ciliary p 97.2 0.23 5E-06 48.6 25.3 89 131-219 5-93 (194)
93 PF05483 SCP-1: Synaptonemal c 97.2 0.63 1.4E-05 52.6 68.7 150 442-598 495-652 (786)
94 COG4477 EzrA Negative regulato 97.1 0.7 1.5E-05 50.9 41.5 78 444-521 352-429 (570)
95 COG5185 HEC1 Protein involved 97.0 0.68 1.5E-05 50.0 40.6 95 175-269 297-401 (622)
96 PRK09039 hypothetical protein; 97.0 0.22 4.7E-06 53.4 23.3 50 160-209 54-103 (343)
97 PF09728 Taxilin: Myosin-like 96.8 0.83 1.8E-05 48.1 40.3 50 140-189 24-73 (309)
98 PF05667 DUF812: Protein of un 96.8 1.5 3.3E-05 50.2 34.7 26 395-420 496-521 (594)
99 KOG0980 Actin-binding protein 96.8 1.7 3.7E-05 50.5 33.5 24 134-157 329-352 (980)
100 COG4372 Uncharacterized protei 96.7 1 2.2E-05 47.6 32.1 108 145-252 81-188 (499)
101 COG3883 Uncharacterized protei 96.7 0.88 1.9E-05 46.4 24.9 61 231-291 33-93 (265)
102 PF09728 Taxilin: Myosin-like 96.6 1.2 2.6E-05 47.0 39.9 60 405-464 203-262 (309)
103 PF14915 CCDC144C: CCDC144C pr 96.5 1.2 2.6E-05 45.8 39.2 17 408-424 282-298 (305)
104 KOG4593 Mitotic checkpoint pro 96.5 2.3 4.9E-05 48.5 57.6 57 442-498 436-492 (716)
105 KOG1003 Actin filament-coating 96.4 0.95 2.1E-05 43.6 26.5 32 189-220 6-37 (205)
106 KOG4593 Mitotic checkpoint pro 96.4 2.4 5.3E-05 48.3 55.0 109 44-152 81-211 (716)
107 KOG0962 DNA repair protein RAD 96.4 3.8 8.2E-05 50.2 57.4 26 46-74 104-129 (1294)
108 COG3883 Uncharacterized protei 96.3 1.5 3.3E-05 44.7 26.1 62 133-194 33-94 (265)
109 COG4372 Uncharacterized protei 96.1 2.4 5.2E-05 44.9 34.1 104 146-249 75-178 (499)
110 PF13514 AAA_27: AAA domain 95.9 6.9 0.00015 48.7 57.6 96 441-543 856-956 (1111)
111 PRK15374 pathogenicity island 95.8 4.1 9E-05 45.3 26.4 187 425-626 141-345 (593)
112 PF08317 Spc7: Spc7 kinetochor 95.7 3.5 7.6E-05 43.8 26.6 100 441-543 186-292 (325)
113 PF09730 BicD: Microtubule-ass 95.7 6 0.00013 46.2 58.2 90 494-591 582-684 (717)
114 TIGR03185 DNA_S_dndD DNA sulfu 95.6 6.2 0.00013 46.1 40.0 77 140-218 171-247 (650)
115 TIGR03007 pepcterm_ChnLen poly 95.6 2.1 4.5E-05 48.3 22.5 55 489-544 318-372 (498)
116 PF14915 CCDC144C: CCDC144C pr 95.3 4.2 9.1E-05 41.9 41.2 157 301-484 146-302 (305)
117 TIGR01005 eps_transp_fam exopo 95.2 2.6 5.7E-05 50.1 22.8 58 104-168 167-224 (754)
118 COG4477 EzrA Negative regulato 95.1 6.8 0.00015 43.5 46.2 71 463-536 439-511 (570)
119 KOG0963 Transcription factor/C 95.0 8.1 0.00018 43.7 47.4 50 449-498 386-435 (629)
120 TIGR03007 pepcterm_ChnLen poly 94.9 4.6 9.9E-05 45.5 22.6 52 109-167 139-190 (498)
121 PF09789 DUF2353: Uncharacteri 94.9 6.1 0.00013 41.6 25.5 38 392-429 191-228 (319)
122 PF05010 TACC: Transforming ac 94.8 4.7 0.0001 39.9 29.4 39 266-304 85-123 (207)
123 PRK11281 hypothetical protein; 94.7 15 0.00033 45.3 41.8 55 142-196 125-179 (1113)
124 PF05911 DUF869: Plant protein 94.6 12 0.00027 44.1 30.6 270 133-416 490-759 (769)
125 PF10481 CENP-F_N: Cenp-F N-te 94.6 5.9 0.00013 40.2 19.3 37 460-496 155-191 (307)
126 KOG0999 Microtubule-associated 94.5 9.6 0.00021 42.3 59.9 107 493-611 596-714 (772)
127 PF04849 HAP1_N: HAP1 N-termin 94.3 8 0.00017 40.4 29.2 22 136-157 53-74 (306)
128 PF08614 ATG16: Autophagy prot 94.2 0.8 1.7E-05 44.9 12.6 68 357-424 118-185 (194)
129 PRK11281 hypothetical protein; 94.1 20 0.00043 44.3 44.3 48 227-274 126-173 (1113)
130 PF07111 HCR: Alpha helical co 94.0 14 0.00031 42.4 57.9 64 131-194 66-129 (739)
131 TIGR01005 eps_transp_fam exopo 93.9 13 0.00027 44.4 24.3 49 441-489 318-367 (754)
132 PRK10929 putative mechanosensi 93.9 22 0.00047 43.9 42.9 25 77-101 68-92 (1109)
133 PF04849 HAP1_N: HAP1 N-termin 93.7 10 0.00022 39.6 28.7 10 137-146 37-46 (306)
134 PF05010 TACC: Transforming ac 93.5 8.7 0.00019 38.0 30.0 24 393-416 178-201 (207)
135 PF13870 DUF4201: Domain of un 93.4 7.9 0.00017 37.2 21.9 121 372-495 52-173 (177)
136 COG5185 HEC1 Protein involved 93.3 15 0.00032 40.2 40.0 10 240-249 313-322 (622)
137 TIGR02680 conserved hypothetic 93.2 33 0.00071 43.8 36.0 235 179-416 741-989 (1353)
138 PF09755 DUF2046: Uncharacteri 93.2 12 0.00027 39.0 32.2 173 65-264 25-199 (310)
139 PF08317 Spc7: Spc7 kinetochor 93.2 14 0.00029 39.4 29.9 6 112-117 68-73 (325)
140 PF09789 DUF2353: Uncharacteri 93.0 14 0.0003 39.0 28.8 19 336-354 205-223 (319)
141 PF07926 TPR_MLP1_2: TPR/MLP1/ 92.8 7.6 0.00017 35.5 19.7 15 301-315 107-121 (132)
142 smart00787 Spc7 Spc7 kinetocho 92.6 16 0.00034 38.7 27.2 99 443-544 183-288 (312)
143 TIGR03017 EpsF chain length de 92.4 20 0.00044 39.5 22.1 49 444-496 323-371 (444)
144 PF08614 ATG16: Autophagy prot 92.4 2.3 5E-05 41.6 12.6 56 237-292 117-172 (194)
145 KOG0963 Transcription factor/C 92.2 25 0.00054 40.0 44.6 108 410-521 316-430 (629)
146 PF06008 Laminin_I: Laminin Do 92.1 16 0.00034 37.6 29.5 31 461-491 214-244 (264)
147 PRK10869 recombination and rep 92.1 27 0.00058 40.1 28.6 132 440-575 297-448 (553)
148 PF07926 TPR_MLP1_2: TPR/MLP1/ 92.0 9.6 0.00021 34.9 19.4 17 141-157 6-22 (132)
149 PF13851 GAS: Growth-arrest sp 92.0 14 0.0003 36.5 25.3 19 359-377 111-129 (201)
150 TIGR00634 recN DNA repair prot 91.8 29 0.00062 39.9 26.7 84 440-523 302-393 (563)
151 PF10168 Nup88: Nuclear pore c 91.8 26 0.00057 41.4 22.2 30 446-475 685-714 (717)
152 PF10498 IFT57: Intra-flagella 91.7 8.1 0.00018 41.6 16.6 25 33-61 92-116 (359)
153 KOG1937 Uncharacterized conser 91.1 27 0.00058 38.1 35.8 24 497-520 497-520 (521)
154 PF10146 zf-C4H2: Zinc finger- 90.3 11 0.00025 37.9 15.2 7 162-168 35-41 (230)
155 KOG1899 LAR transmembrane tyro 90.3 37 0.00081 38.5 21.0 38 364-401 219-256 (861)
156 TIGR00634 recN DNA repair prot 90.2 40 0.00086 38.7 28.4 22 130-151 136-157 (563)
157 PF11657 Activator-TraM: Trans 90.2 9.3 0.0002 35.5 13.2 67 554-626 77-143 (144)
158 KOG0978 E3 ubiquitin ligase in 90.1 43 0.00093 39.0 62.7 61 44-104 53-113 (698)
159 PF04111 APG6: Autophagy prote 89.9 6.6 0.00014 41.5 13.9 16 140-155 18-33 (314)
160 PF13514 AAA_27: AAA domain 89.8 63 0.0014 40.4 61.9 37 67-103 346-382 (1111)
161 PRK09343 prefoldin subunit bet 89.7 14 0.0003 33.3 13.9 103 388-505 5-109 (121)
162 PF15066 CAGE1: Cancer-associa 89.4 37 0.00081 37.2 28.8 49 239-287 386-434 (527)
163 PF09787 Golgin_A5: Golgin sub 89.3 44 0.00095 37.9 33.8 26 75-100 110-135 (511)
164 PF05384 DegS: Sensor protein 89.2 20 0.00044 33.9 20.6 40 389-428 83-122 (159)
165 PF10481 CENP-F_N: Cenp-F N-te 89.0 29 0.00062 35.4 19.5 58 157-214 23-80 (307)
166 COG4026 Uncharacterized protei 88.9 4.6 0.0001 39.7 10.6 74 467-540 128-204 (290)
167 PRK10929 putative mechanosensi 88.8 70 0.0015 39.7 44.4 8 604-611 523-530 (1109)
168 PF09304 Cortex-I_coil: Cortex 88.5 16 0.00035 31.9 15.3 24 336-359 46-69 (107)
169 PF10498 IFT57: Intra-flagella 88.1 25 0.00054 38.0 16.7 17 44-60 38-54 (359)
170 PRK13895 conjugal transfer pro 87.5 2.9 6.3E-05 38.3 7.8 25 602-626 119-143 (144)
171 KOG0804 Cytoplasmic Zn-finger 87.4 41 0.00089 36.8 17.5 55 202-256 348-402 (493)
172 PF13166 AAA_13: AAA domain 87.2 69 0.0015 37.7 25.7 11 135-145 269-279 (712)
173 KOG1899 LAR transmembrane tyro 86.8 63 0.0014 36.8 20.6 46 344-389 170-215 (861)
174 PF06005 DUF904: Protein of un 86.6 11 0.00023 30.9 9.9 65 456-520 7-71 (72)
175 COG4026 Uncharacterized protei 86.2 8.2 0.00018 38.0 10.6 67 354-420 134-200 (290)
176 PF09738 DUF2051: Double stran 86.0 17 0.00036 38.2 13.7 86 139-224 78-163 (302)
177 KOG0962 DNA repair protein RAD 85.9 1E+02 0.0022 38.4 63.1 100 499-598 1012-1118(1294)
178 PF04582 Reo_sigmaC: Reovirus 85.7 1.6 3.4E-05 45.9 5.9 74 181-254 29-102 (326)
179 KOG0804 Cytoplasmic Zn-finger 85.4 57 0.0012 35.8 17.3 17 269-285 380-396 (493)
180 TIGR02338 gimC_beta prefoldin, 85.4 25 0.00055 31.0 13.4 96 395-505 8-105 (110)
181 TIGR00618 sbcc exonuclease Sbc 85.0 1.1E+02 0.0024 38.0 54.6 26 129-154 154-179 (1042)
182 KOG4360 Uncharacterized coiled 84.3 74 0.0016 35.4 19.6 28 83-110 78-105 (596)
183 TIGR03017 EpsF chain length de 84.1 72 0.0016 35.2 25.6 51 111-168 151-201 (444)
184 PF05384 DegS: Sensor protein 83.7 40 0.00088 31.9 21.4 14 186-199 40-53 (159)
185 KOG4360 Uncharacterized coiled 83.2 82 0.0018 35.1 22.8 25 568-592 442-468 (596)
186 PF12329 TMF_DNA_bd: TATA elem 82.5 23 0.0005 29.0 10.3 63 358-420 8-70 (74)
187 PF04582 Reo_sigmaC: Reovirus 81.9 3 6.4E-05 43.9 6.0 21 301-321 100-120 (326)
188 KOG4809 Rab6 GTPase-interactin 81.0 1E+02 0.0022 34.7 31.6 27 140-166 340-366 (654)
189 KOG0810 SNARE protein Syntaxin 80.7 78 0.0017 33.2 24.1 89 525-620 194-283 (297)
190 PF11932 DUF3450: Protein of u 80.6 52 0.0011 33.5 14.7 103 473-577 55-162 (251)
191 PHA01750 hypothetical protein 80.5 1.6 3.6E-05 34.2 2.7 19 606-624 7-26 (75)
192 TIGR01000 bacteriocin_acc bact 80.3 1E+02 0.0022 34.3 23.4 22 194-215 97-118 (457)
193 PF07798 DUF1640: Protein of u 80.0 59 0.0013 31.3 18.9 39 484-522 54-93 (177)
194 PF03915 AIP3: Actin interacti 79.9 26 0.00056 38.6 12.7 86 467-552 206-308 (424)
195 PF09755 DUF2046: Uncharacteri 79.8 84 0.0018 33.0 36.7 65 247-311 110-175 (310)
196 smart00787 Spc7 Spc7 kinetocho 79.7 88 0.0019 33.1 30.6 6 112-117 63-68 (312)
197 TIGR02338 gimC_beta prefoldin, 79.2 41 0.00088 29.6 11.7 94 462-563 5-105 (110)
198 PF15450 DUF4631: Domain of un 79.0 1.2E+02 0.0025 34.1 53.1 50 141-190 23-72 (531)
199 PF12795 MscS_porin: Mechanose 78.9 77 0.0017 32.0 26.0 12 409-420 197-208 (240)
200 KOG0999 Microtubule-associated 78.6 1.2E+02 0.0026 34.1 50.8 61 484-544 438-506 (772)
201 PF06818 Fez1: Fez1; InterPro 78.1 73 0.0016 31.4 23.4 74 135-208 7-80 (202)
202 KOG0972 Huntingtin interacting 78.0 54 0.0012 33.8 13.2 23 110-132 210-232 (384)
203 PF13166 AAA_13: AAA domain 77.4 1.6E+02 0.0034 34.8 27.8 14 532-545 612-625 (712)
204 smart00806 AIP3 Actin interact 77.1 1.2E+02 0.0026 33.3 25.1 104 441-544 182-303 (426)
205 PF09738 DUF2051: Double stran 76.6 58 0.0013 34.2 13.6 27 226-252 109-135 (302)
206 PF11559 ADIP: Afadin- and alp 76.5 66 0.0014 29.9 17.3 6 410-415 139-144 (151)
207 COG2433 Uncharacterized conser 76.2 53 0.0012 37.4 13.7 12 76-87 344-355 (652)
208 PRK10869 recombination and rep 76.2 1.5E+02 0.0033 34.0 28.3 17 135-151 137-153 (553)
209 COG2433 Uncharacterized conser 75.7 57 0.0012 37.2 13.8 11 65-75 340-350 (652)
210 KOG0979 Structural maintenance 75.3 2E+02 0.0043 34.9 57.0 163 138-301 181-355 (1072)
211 PF04949 Transcrip_act: Transc 75.1 71 0.0015 29.7 17.5 65 435-499 80-144 (159)
212 PRK10884 SH3 domain-containing 74.7 58 0.0013 32.2 12.5 28 388-415 137-164 (206)
213 PF07111 HCR: Alpha helical co 73.9 1.8E+02 0.004 33.8 62.9 19 587-605 637-656 (739)
214 cd00632 Prefoldin_beta Prefold 73.2 57 0.0012 28.4 10.9 55 59-120 5-59 (105)
215 PF10267 Tmemb_cc2: Predicted 73.0 1.2E+02 0.0027 33.1 15.4 61 525-585 249-318 (395)
216 PF06785 UPF0242: Uncharacteri 72.6 1.3E+02 0.0029 31.7 19.6 29 455-483 289-317 (401)
217 KOG3091 Nuclear pore complex, 71.3 1.8E+02 0.0038 32.5 18.6 44 531-577 463-507 (508)
218 KOG1853 LIS1-interacting prote 71.0 1.2E+02 0.0027 30.6 20.7 28 105-132 8-39 (333)
219 TIGR03545 conserved hypothetic 69.3 1.8E+02 0.004 33.3 16.5 119 445-578 190-309 (555)
220 PF11180 DUF2968: Protein of u 68.6 1.2E+02 0.0026 29.5 13.4 29 89-117 39-78 (192)
221 KOG0982 Centrosomal protein Nu 68.5 1.9E+02 0.004 31.7 27.4 22 25-46 130-151 (502)
222 PF07889 DUF1664: Protein of u 68.1 96 0.0021 28.2 12.7 27 140-166 38-64 (126)
223 PRK09343 prefoldin subunit bet 68.1 92 0.002 28.0 11.3 95 58-166 12-106 (121)
224 PF07106 TBPIP: Tat binding pr 66.8 55 0.0012 31.1 10.2 19 524-542 142-160 (169)
225 PF08581 Tup_N: Tup N-terminal 66.7 75 0.0016 26.4 11.1 14 446-459 64-77 (79)
226 PF04912 Dynamitin: Dynamitin 66.6 2E+02 0.0043 31.3 24.5 19 117-135 48-66 (388)
227 KOG0249 LAR-interacting protei 65.4 2.8E+02 0.006 32.5 22.8 37 381-417 221-257 (916)
228 KOG3478 Prefoldin subunit 6, K 65.0 99 0.0021 27.3 10.2 93 70-169 22-114 (120)
229 PRK10246 exonuclease subunit S 62.6 3.9E+02 0.0085 33.3 71.8 37 475-511 711-747 (1047)
230 KOG1850 Myosin-like coiled-coi 62.5 2.1E+02 0.0045 30.1 38.0 71 120-196 76-146 (391)
231 PRK02119 hypothetical protein; 62.4 48 0.001 27.1 7.5 52 472-523 7-58 (73)
232 KOG0982 Centrosomal protein Nu 62.3 2.4E+02 0.0053 30.9 31.4 17 478-494 421-437 (502)
233 COG0497 RecN ATPase involved i 61.6 3E+02 0.0064 31.6 28.8 84 440-523 298-389 (557)
234 KOG0288 WD40 repeat protein Ti 61.5 2.5E+02 0.0054 30.7 16.8 52 242-293 19-70 (459)
235 PRK09841 cryptic autophosphory 60.9 3.2E+02 0.0068 32.5 17.1 12 566-577 630-641 (726)
236 KOG0980 Actin-binding protein 60.6 3.7E+02 0.0079 32.3 52.2 22 557-578 713-734 (980)
237 PF02994 Transposase_22: L1 tr 60.3 20 0.00044 38.8 6.5 46 478-523 141-186 (370)
238 KOG3091 Nuclear pore complex, 60.2 2.8E+02 0.0061 31.0 14.9 136 445-588 354-493 (508)
239 PF15397 DUF4618: Domain of un 60.1 2.1E+02 0.0045 29.4 32.0 29 235-263 80-108 (258)
240 PF04888 SseC: Secretion syste 60.0 38 0.00082 35.5 8.4 53 567-620 18-75 (306)
241 COG3096 MukB Uncharacterized p 58.5 3.7E+02 0.008 31.7 37.3 97 394-500 988-1085(1480)
242 PF06810 Phage_GP20: Phage min 58.0 1.1E+02 0.0023 28.9 10.1 18 579-597 114-131 (155)
243 PF06785 UPF0242: Uncharacteri 57.9 2.6E+02 0.0055 29.7 19.8 78 186-263 98-175 (401)
244 KOG0972 Huntingtin interacting 57.6 2.4E+02 0.0052 29.3 15.3 16 45-60 55-70 (384)
245 PF02403 Seryl_tRNA_N: Seryl-t 57.4 1.3E+02 0.0028 26.1 11.2 81 442-523 5-88 (108)
246 PF02183 HALZ: Homeobox associ 57.4 47 0.001 24.5 5.9 31 468-498 6-36 (45)
247 PRK04406 hypothetical protein; 57.3 87 0.0019 25.8 8.2 52 472-523 9-60 (75)
248 COG5283 Phage-related tail pro 56.8 4.8E+02 0.01 32.5 30.8 34 576-609 276-312 (1213)
249 PF09325 Vps5: Vps5 C terminal 56.5 2.1E+02 0.0046 28.3 24.7 55 38-92 16-70 (236)
250 KOG0243 Kinesin-like protein [ 55.8 4.7E+02 0.01 32.2 53.6 37 554-590 838-874 (1041)
251 PF02183 HALZ: Homeobox associ 55.1 48 0.001 24.4 5.7 38 473-510 4-41 (45)
252 COG5343 Uncharacterized protei 55.0 9.6 0.00021 37.5 2.6 25 603-627 98-122 (240)
253 cd00632 Prefoldin_beta Prefold 54.8 1.3E+02 0.0029 26.1 9.6 88 81-168 13-100 (105)
254 KOG1853 LIS1-interacting prote 53.8 2.6E+02 0.0056 28.5 22.3 9 285-293 98-106 (333)
255 PRK02793 phi X174 lysis protei 53.4 1E+02 0.0022 25.1 8.0 50 474-523 8-57 (72)
256 PF07106 TBPIP: Tat binding pr 53.4 2E+02 0.0044 27.2 12.3 34 133-166 74-107 (169)
257 PRK02119 hypothetical protein; 52.9 1.1E+02 0.0025 24.9 8.2 14 272-285 10-23 (73)
258 COG1842 PspA Phage shock prote 52.8 2.6E+02 0.0056 28.2 21.3 151 374-542 29-181 (225)
259 PF10805 DUF2730: Protein of u 52.8 75 0.0016 27.9 7.7 50 473-522 34-85 (106)
260 KOG1937 Uncharacterized conser 52.7 3.6E+02 0.0078 29.8 35.2 41 369-409 389-429 (521)
261 KOG1962 B-cell receptor-associ 52.7 1.1E+02 0.0024 30.4 9.6 33 383-415 172-204 (216)
262 PF15290 Syntaphilin: Golgi-lo 52.0 2.9E+02 0.0063 28.6 14.4 20 301-320 84-103 (305)
263 PRK04406 hypothetical protein; 51.9 1.3E+02 0.0029 24.7 8.5 6 275-280 15-20 (75)
264 PF05266 DUF724: Protein of un 51.3 2.5E+02 0.0053 27.5 16.2 13 244-256 132-144 (190)
265 PF03962 Mnd1: Mnd1 family; I 51.3 2.4E+02 0.0053 27.4 12.7 32 440-471 111-142 (188)
266 PF11131 PhrC_PhrF: Rap-phr ex 50.6 8.3 0.00018 26.7 1.0 20 604-623 2-22 (37)
267 PF03915 AIP3: Actin interacti 50.5 3.9E+02 0.0084 29.6 16.5 47 439-486 253-300 (424)
268 PF09766 FimP: Fms-interacting 50.1 3.2E+02 0.0069 29.5 13.5 58 465-522 85-142 (355)
269 PF05266 DUF724: Protein of un 50.1 2.6E+02 0.0056 27.4 16.3 43 112-157 73-115 (190)
270 PRK04325 hypothetical protein; 49.4 1.3E+02 0.0029 24.6 8.1 47 469-522 11-57 (74)
271 PF04012 PspA_IM30: PspA/IM30 49.3 2.7E+02 0.0059 27.5 25.5 18 463-480 161-178 (221)
272 PF04102 SlyX: SlyX; InterPro 49.3 95 0.0021 24.9 7.2 12 274-285 7-18 (69)
273 PRK14011 prefoldin subunit alp 49.1 2.3E+02 0.0049 26.4 11.5 43 525-567 86-130 (144)
274 PF03962 Mnd1: Mnd1 family; I 48.5 2.7E+02 0.0058 27.1 13.7 27 395-421 140-166 (188)
275 cd07666 BAR_SNX7 The Bin/Amphi 47.7 3.2E+02 0.007 27.8 20.6 143 379-521 50-196 (243)
276 PF06120 Phage_HK97_TLTM: Tail 47.1 3.7E+02 0.008 28.3 19.2 6 112-117 24-29 (301)
277 KOG4302 Microtubule-associated 47.1 5.3E+02 0.012 30.2 33.7 37 382-418 225-261 (660)
278 PRK00736 hypothetical protein; 46.4 1.5E+02 0.0032 23.8 7.8 36 487-522 18-53 (68)
279 PF05278 PEARLI-4: Arabidopsis 46.2 3.6E+02 0.0077 27.9 16.0 6 100-105 82-87 (269)
280 PRK00295 hypothetical protein; 45.5 1.6E+02 0.0035 23.7 8.1 15 273-287 7-21 (68)
281 TIGR01010 BexC_CtrB_KpsE polys 45.2 4.1E+02 0.009 28.4 19.9 57 440-496 243-307 (362)
282 TIGR03752 conj_TIGR03752 integ 45.0 2.3E+02 0.0049 31.7 11.3 83 440-522 60-143 (472)
283 PRK04325 hypothetical protein; 44.8 1.7E+02 0.0038 23.9 8.2 13 273-285 11-23 (74)
284 TIGR02894 DNA_bind_RsfA transc 44.4 2.8E+02 0.0062 26.3 13.0 46 466-511 103-148 (161)
285 COG4911 Uncharacterized conser 44.4 34 0.00073 29.9 3.9 73 454-542 12-91 (123)
286 PRK00295 hypothetical protein; 44.3 1.6E+02 0.0035 23.6 7.7 45 469-513 7-51 (68)
287 KOG4005 Transcription factor X 44.3 3.5E+02 0.0076 27.3 11.5 52 121-173 53-104 (292)
288 PF10234 Cluap1: Clusterin-ass 44.0 3.9E+02 0.0084 27.7 18.8 30 138-167 47-76 (267)
289 PRK00846 hypothetical protein; 43.9 1.8E+02 0.004 24.1 8.0 36 488-523 27-62 (77)
290 PLN03229 acetyl-coenzyme A car 43.8 6.2E+02 0.013 30.0 16.8 99 441-544 431-545 (762)
291 PRK02793 phi X174 lysis protei 43.8 1.8E+02 0.0038 23.7 8.1 15 272-286 9-23 (72)
292 PF15035 Rootletin: Ciliary ro 43.8 3.1E+02 0.0068 26.6 18.2 19 336-354 97-115 (182)
293 COG3352 FlaC Putative archaeal 43.3 2.3E+02 0.005 26.5 9.4 97 166-262 44-141 (157)
294 KOG2264 Exostosin EXT1L [Signa 42.8 1.7E+02 0.0036 33.2 9.8 19 241-259 105-123 (907)
295 PF04012 PspA_IM30: PspA/IM30 42.5 3.5E+02 0.0075 26.7 23.5 52 369-420 91-142 (221)
296 KOG2196 Nuclear porin [Nuclear 42.5 3.8E+02 0.0082 27.2 19.4 32 446-477 178-209 (254)
297 KOG4302 Microtubule-associated 42.4 6.3E+02 0.014 29.7 31.2 38 560-598 427-469 (660)
298 PF15294 Leu_zip: Leucine zipp 42.2 4.2E+02 0.009 27.6 23.9 63 65-127 9-79 (278)
299 PRK00736 hypothetical protein; 42.2 1.8E+02 0.0039 23.3 7.8 13 273-285 7-19 (68)
300 PF14992 TMCO5: TMCO5 family 41.8 4.2E+02 0.0092 27.5 15.7 22 187-208 25-46 (280)
301 PF03993 DUF349: Domain of Unk 41.8 1E+02 0.0022 24.7 6.5 52 468-524 21-72 (77)
302 KOG2391 Vacuolar sorting prote 41.2 2.4E+02 0.0052 30.0 10.3 104 467-574 232-341 (365)
303 KOG4809 Rab6 GTPase-interactin 41.2 5.9E+02 0.013 29.0 33.0 19 146-164 332-350 (654)
304 TIGR03752 conj_TIGR03752 integ 40.9 3.2E+02 0.0069 30.5 11.7 19 237-255 117-135 (472)
305 PF10212 TTKRSYEDQ: Predicted 40.7 5.9E+02 0.013 28.8 23.0 15 46-60 44-58 (518)
306 PF15254 CCDC14: Coiled-coil d 40.7 7E+02 0.015 29.7 20.7 20 144-163 393-412 (861)
307 PF05377 FlaC_arch: Flagella a 40.6 98 0.0021 23.9 5.5 8 535-542 43-50 (55)
308 KOG4196 bZIP transcription fac 40.4 2.9E+02 0.0063 25.2 9.8 71 445-523 46-116 (135)
309 KOG0243 Kinesin-like protein [ 40.4 8E+02 0.017 30.3 54.6 22 131-152 404-425 (1041)
310 PHA03011 hypothetical protein; 40.3 1.8E+02 0.0039 25.2 7.6 52 201-252 64-115 (120)
311 KOG2991 Splicing regulator [RN 40.3 4.2E+02 0.0091 27.1 23.6 28 284-311 176-203 (330)
312 KOG4603 TBP-1 interacting prot 38.9 3.6E+02 0.0078 25.8 13.3 110 383-506 79-188 (201)
313 PF06103 DUF948: Bacterial pro 38.9 2.3E+02 0.005 23.7 8.8 58 466-523 25-82 (90)
314 PF14073 Cep57_CLD: Centrosome 38.9 3.7E+02 0.008 26.0 21.3 47 280-326 122-168 (178)
315 PF04728 LPP: Lipoprotein leuc 38.9 1.1E+02 0.0024 23.7 5.6 42 440-481 11-52 (56)
316 PF15290 Syntaphilin: Golgi-lo 38.8 4.7E+02 0.01 27.1 14.1 19 239-257 120-138 (305)
317 COG0497 RecN ATPase involved i 38.4 6.7E+02 0.014 28.8 26.5 8 143-150 144-151 (557)
318 PF10234 Cluap1: Clusterin-ass 38.3 4.7E+02 0.01 27.0 19.0 37 348-384 197-233 (267)
319 PF03999 MAP65_ASE1: Microtubu 38.2 1.4E+02 0.0031 34.7 9.3 27 446-472 384-410 (619)
320 PF04977 DivIC: Septum formati 38.1 1E+02 0.0022 24.8 6.0 25 497-521 26-50 (80)
321 cd00890 Prefoldin Prefoldin is 38.1 2.9E+02 0.0062 24.5 10.6 38 525-562 85-124 (129)
322 PF10661 EssA: WXG100 protein 37.8 28 0.00061 32.5 2.7 29 600-628 112-141 (145)
323 COG1842 PspA Phage shock prote 37.8 4.4E+02 0.0095 26.5 25.7 20 463-482 162-181 (225)
324 TIGR00293 prefoldin, archaeal 37.7 2E+02 0.0044 25.6 8.4 34 60-93 6-39 (126)
325 PF06632 XRCC4: DNA double-str 37.7 2.9E+02 0.0063 29.7 10.7 74 45-160 143-216 (342)
326 KOG3478 Prefoldin subunit 6, K 37.7 2.9E+02 0.0063 24.5 14.4 49 456-504 56-106 (120)
327 PF12761 End3: Actin cytoskele 37.6 2.7E+02 0.0058 27.3 9.4 18 185-202 101-118 (195)
328 PF12777 MT: Microtubule-bindi 37.4 5.4E+02 0.012 27.5 22.4 82 336-417 230-311 (344)
329 PF00170 bZIP_1: bZIP transcri 37.3 1.5E+02 0.0032 23.2 6.5 27 488-514 33-59 (64)
330 KOG0979 Structural maintenance 37.0 8.8E+02 0.019 29.8 59.0 96 138-233 262-357 (1072)
331 PF00901 Orbi_VP5: Orbivirus o 36.8 4.8E+02 0.01 29.3 12.2 130 500-629 89-244 (508)
332 COG1382 GimC Prefoldin, chaper 36.8 3.2E+02 0.0069 24.6 14.6 31 399-429 15-45 (119)
333 PF10046 BLOC1_2: Biogenesis o 36.8 2.8E+02 0.006 23.9 11.5 49 448-496 16-64 (99)
334 PF06156 DUF972: Protein of un 36.5 2.4E+02 0.0051 24.9 8.2 48 374-421 6-53 (107)
335 COG5293 Predicted ATPase [Gene 36.4 6.4E+02 0.014 28.1 25.4 117 456-578 308-448 (591)
336 KOG1850 Myosin-like coiled-coi 35.8 5.5E+02 0.012 27.1 41.1 14 194-207 76-89 (391)
337 PF10191 COG7: Golgi complex c 35.7 8.5E+02 0.018 29.2 22.0 124 441-573 79-213 (766)
338 PF07989 Microtub_assoc: Micro 35.5 2.5E+02 0.0054 23.1 8.5 30 488-517 43-72 (75)
339 PHA03011 hypothetical protein; 35.4 3E+02 0.0064 23.9 8.4 49 466-521 70-118 (120)
340 PF10267 Tmemb_cc2: Predicted 34.9 6.4E+02 0.014 27.6 15.9 34 58-93 48-81 (395)
341 PF04728 LPP: Lipoprotein leuc 34.3 2.2E+02 0.0048 22.1 7.8 32 180-211 17-48 (56)
342 PF01166 TSC22: TSC-22/dip/bun 34.2 53 0.0011 25.5 3.2 31 472-502 12-42 (59)
343 PF05529 Bap31: B-cell recepto 34.1 2.4E+02 0.0053 27.2 8.9 19 186-204 167-185 (192)
344 PF07989 Microtub_assoc: Micro 34.1 2.6E+02 0.0057 22.9 8.8 17 201-217 7-23 (75)
345 PF07851 TMPIT: TMPIT-like pro 34.1 5.5E+02 0.012 27.4 11.8 43 138-180 4-46 (330)
346 PF07851 TMPIT: TMPIT-like pro 34.0 4.9E+02 0.011 27.8 11.4 10 606-615 294-304 (330)
347 KOG3647 Predicted coiled-coil 33.3 5.6E+02 0.012 26.4 14.4 60 308-367 121-180 (338)
348 PF05335 DUF745: Protein of un 33.3 4.7E+02 0.01 25.5 17.3 73 131-203 60-132 (188)
349 PF07200 Mod_r: Modifier of ru 33.2 3.9E+02 0.0084 24.6 13.3 119 441-586 29-149 (150)
350 KOG2010 Double stranded RNA bi 33.0 5.8E+02 0.012 27.0 11.3 56 140-195 113-169 (405)
351 PF15470 DUF4637: Domain of un 32.9 14 0.0003 33.9 -0.1 22 587-613 78-99 (173)
352 PF06810 Phage_GP20: Phage min 32.8 4.2E+02 0.0092 24.9 11.4 17 451-467 87-103 (155)
353 KOG2010 Double stranded RNA bi 32.8 5.1E+02 0.011 27.4 10.9 10 77-86 21-30 (405)
354 KOG2991 Splicing regulator [RN 32.7 5.6E+02 0.012 26.2 25.2 18 26-43 38-55 (330)
355 TIGR02894 DNA_bind_RsfA transc 32.4 4.3E+02 0.0092 25.1 9.5 69 441-509 82-153 (161)
356 TIGR02449 conserved hypothetic 31.7 2.7E+02 0.0059 22.3 7.3 57 44-100 5-61 (65)
357 PF12590 Acyl-thio_N: Acyl-ATP 31.4 32 0.0007 30.9 1.9 15 606-620 95-110 (129)
358 PF09787 Golgin_A5: Golgin sub 31.3 8.2E+02 0.018 27.7 37.2 25 140-164 111-135 (511)
359 TIGR02977 phageshock_pspA phag 31.3 5.3E+02 0.011 25.6 25.7 18 463-480 162-179 (219)
360 PRK11519 tyrosine kinase; Prov 31.3 9.5E+02 0.021 28.5 18.2 15 564-578 623-637 (719)
361 KOG0239 Kinesin (KAR3 subfamil 31.3 9.4E+02 0.02 28.4 21.6 9 388-396 305-313 (670)
362 KOG4797 Transcriptional regula 31.2 1.1E+02 0.0024 26.8 5.0 33 471-503 64-96 (123)
363 PF04065 Not3: Not1 N-terminal 31.1 5.7E+02 0.012 25.9 15.4 74 472-545 120-215 (233)
364 PRK10698 phage shock protein P 31.0 5.5E+02 0.012 25.6 24.6 125 369-518 92-217 (222)
365 PF04912 Dynamitin: Dynamitin 30.4 7.3E+02 0.016 26.9 24.4 20 41-60 89-108 (388)
366 PRK11415 hypothetical protein; 30.3 1.2E+02 0.0027 24.7 5.1 59 462-520 5-64 (74)
367 PF06320 GCN5L1: GCN5-like pro 30.1 4.1E+02 0.0089 23.9 12.5 71 472-542 38-114 (121)
368 PF14257 DUF4349: Domain of un 30.1 3.6E+02 0.0078 27.4 9.8 77 446-522 105-189 (262)
369 PF05335 DUF745: Protein of un 29.8 5.4E+02 0.012 25.1 17.3 14 346-359 128-141 (188)
370 PF14282 FlxA: FlxA-like prote 28.9 3.1E+02 0.0067 24.0 7.7 56 440-498 20-75 (106)
371 PF05278 PEARLI-4: Arabidopsis 28.7 6.7E+02 0.015 25.9 15.3 56 366-421 204-259 (269)
372 PF15397 DUF4618: Domain of un 28.5 6.6E+02 0.014 25.8 30.8 24 383-406 193-216 (258)
373 PRK13169 DNA replication intia 28.3 3.4E+02 0.0074 24.1 7.8 48 374-421 6-53 (110)
374 KOG2751 Beclin-like protein [S 28.1 8.5E+02 0.018 26.9 16.4 11 568-578 383-393 (447)
375 TIGR02449 conserved hypothetic 28.0 3.2E+02 0.0069 21.9 8.4 54 469-522 9-62 (65)
376 PF12777 MT: Microtubule-bindi 28.0 7.6E+02 0.017 26.3 22.8 22 196-217 10-31 (344)
377 PF13747 DUF4164: Domain of un 27.2 3.9E+02 0.0084 22.7 12.1 39 382-420 38-76 (89)
378 PF10212 TTKRSYEDQ: Predicted 27.0 9.7E+02 0.021 27.2 24.0 32 131-162 295-326 (518)
379 PF15254 CCDC14: Coiled-coil d 26.7 1.2E+03 0.025 28.0 27.1 51 351-401 504-554 (861)
380 PF10205 KLRAQ: Predicted coil 26.4 4.4E+02 0.0096 23.1 10.6 41 372-412 29-69 (102)
381 KOG0860 Synaptobrevin/VAMP-lik 26.0 1.6E+02 0.0035 26.3 5.3 44 122-166 42-85 (116)
382 PF10458 Val_tRNA-synt_C: Valy 26.0 2.8E+02 0.0062 21.8 6.4 23 139-161 5-27 (66)
383 KOG4438 Centromere-associated 25.8 9.2E+02 0.02 26.6 39.7 35 180-214 173-207 (446)
384 PRK10803 tol-pal system protei 25.7 4.2E+02 0.0091 27.2 9.3 25 183-207 64-88 (263)
385 PRK10698 phage shock protein P 25.4 6.9E+02 0.015 24.9 25.2 43 373-415 103-145 (222)
386 KOG2196 Nuclear porin [Nuclear 25.2 7.3E+02 0.016 25.2 19.7 39 250-288 99-137 (254)
387 PF13815 Dzip-like_N: Iguana/D 25.0 2E+02 0.0043 25.7 5.9 43 477-519 76-118 (118)
388 PF07200 Mod_r: Modifier of ru 24.7 5.5E+02 0.012 23.6 14.8 28 569-596 111-138 (150)
389 PF09325 Vps5: Vps5 C terminal 24.2 6.9E+02 0.015 24.5 22.9 49 128-176 21-69 (236)
390 PF01920 Prefoldin_2: Prefoldi 24.0 4.4E+02 0.0096 22.3 12.7 18 186-203 11-28 (106)
391 PF08172 CASP_C: CASP C termin 24.0 7.8E+02 0.017 25.1 12.7 26 143-168 4-29 (248)
392 PF00170 bZIP_1: bZIP transcri 23.6 3.3E+02 0.0071 21.2 6.3 11 485-495 44-54 (64)
393 TIGR02132 phaR_Bmeg polyhydrox 23.6 6.7E+02 0.015 24.2 11.0 66 458-523 63-128 (189)
394 PRK10803 tol-pal system protei 23.6 5.4E+02 0.012 26.4 9.6 22 301-322 77-98 (263)
395 TIGR02977 phageshock_pspA phag 23.3 7.3E+02 0.016 24.5 22.3 15 525-539 164-178 (219)
396 PF08657 DASH_Spc34: DASH comp 23.2 7.6E+02 0.016 25.4 10.4 52 450-501 161-214 (259)
397 PF12534 DUF3733: Leucine-rich 22.9 49 0.0011 26.4 1.3 24 96-119 6-29 (65)
398 KOG3647 Predicted coiled-coil 22.5 8.6E+02 0.019 25.1 16.6 73 346-418 110-182 (338)
399 PF08687 ASD2: Apx/Shroom doma 22.5 8.7E+02 0.019 25.1 14.6 60 494-553 146-207 (264)
400 PF13094 CENP-Q: CENP-Q, a CEN 22.3 4.5E+02 0.0098 24.5 8.2 58 466-523 19-76 (160)
401 PF15219 TEX12: Testis-express 22.2 4.9E+02 0.011 22.3 7.1 63 76-163 27-89 (100)
402 smart00338 BRLZ basic region l 21.9 3E+02 0.0066 21.4 5.8 30 485-514 30-59 (65)
403 PF02355 SecD_SecF: Protein ex 21.8 1.8E+02 0.004 28.2 5.5 22 603-624 129-151 (189)
404 PF04949 Transcrip_act: Transc 21.7 6.7E+02 0.015 23.5 17.8 59 235-293 83-141 (159)
405 KOG2176 Exocyst complex, subun 21.6 1E+03 0.022 28.4 11.9 83 440-522 49-135 (800)
406 PF14990 DUF4516: Domain of un 21.4 88 0.0019 23.3 2.3 18 606-623 11-28 (47)
407 PF06937 EURL: EURL protein; 21.3 1.7E+02 0.0038 29.9 5.2 41 46-86 219-259 (285)
408 PF08172 CASP_C: CASP C termin 21.2 8.9E+02 0.019 24.7 12.5 25 301-325 95-119 (248)
409 PF04880 NUDE_C: NUDE protein, 21.2 1.9E+02 0.004 27.7 5.1 41 474-518 7-47 (166)
410 PF05064 Nsp1_C: Nsp1-like C-t 20.8 1.5E+02 0.0034 26.3 4.3 30 358-387 74-103 (116)
411 PF09602 PhaP_Bmeg: Polyhydrox 20.7 7.5E+02 0.016 23.6 16.2 23 476-498 43-65 (165)
412 PF10211 Ax_dynein_light: Axon 20.5 7.9E+02 0.017 23.8 15.2 108 411-521 80-189 (189)
413 KOG3433 Protein involved in me 20.3 8E+02 0.017 23.8 11.1 82 442-523 84-165 (203)
414 PRK11546 zraP zinc resistance 20.3 7.1E+02 0.015 23.2 8.7 15 385-399 91-105 (143)
415 TIGR00414 serS seryl-tRNA synt 20.3 6.6E+02 0.014 27.7 10.0 21 604-624 378-401 (418)
416 PF15294 Leu_zip: Leucine zipp 20.2 9.9E+02 0.021 24.9 26.7 44 235-278 131-174 (278)
417 TIGR00414 serS seryl-tRNA synt 20.1 8.8E+02 0.019 26.7 11.0 79 444-523 7-90 (418)
418 PF05461 ApoL: Apolipoprotein 20.1 6E+02 0.013 26.9 9.2 46 563-615 60-106 (313)
No 1
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.88 E-value=2e-16 Score=194.30 Aligned_cols=70 Identities=7% Similarity=0.132 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHhhccchHHHHHHHH----HHHHHHhhhhhh-HhhhhHhH-HHHhhhhhHHHHH---HHHHHHHHHHcc
Q 006828 508 KRNADDLRAKMESIGFNSDRALSMLK----NTAAMVCQSEND-IDGQQELV-VDEKKLQGETDQY---AAEFQAIVNAFR 578 (629)
Q Consensus 508 ~k~i~~Lk~~I~~lg~vaiee~~~~k----er~~fl~~q~~D-~~ak~~l~-~i~~~~~~m~~~f---~~~f~~i~~~F~ 578 (629)
..++..++..|..||| ||++|+.++ +||+||..|++| ..++..|. +|.+|+..|..+| ..+|..|+.+|+
T Consensus 964 ~~~~~~l~~~i~~lg~-aiee~~~~~~~a~er~~~l~~q~~dL~~~~~~L~~~i~~i~~~~~~~f~~~~~~F~~v~~~f~ 1042 (1179)
T TIGR02168 964 EDDEEEARRRLKRLEN-KIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREARERFKDTFDQVN 1042 (1179)
T ss_pred ccCHHHHHHHHHHHHH-HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999 999999999 999999999999 99999999 9999999999999 999999999998
No 2
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.87 E-value=2.5e-15 Score=183.29 Aligned_cols=73 Identities=16% Similarity=0.294 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHhhhhhh-HhhhhHhH-HHHhhhhhHHHHHHHHHHHHHHHcc
Q 006828 506 EAKRNADDLRAKMESIGFN---SDRALSMLKNTAAMVCQSEND-IDGQQELV-VDEKKLQGETDQYAAEFQAIVNAFR 578 (629)
Q Consensus 506 ~~~k~i~~Lk~~I~~lg~v---aiee~~~~ker~~fl~~q~~D-~~ak~~l~-~i~~~~~~m~~~f~~~f~~i~~~F~ 578 (629)
.+...+..++.+|..|||| ||++|+.+.+||+||..+++| ..|+..|. +|.+++..+..+|..+|+.|+.+|+
T Consensus 946 ~~~~~i~~le~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~~~~f~~~f~~In~~F~ 1023 (1163)
T COG1196 946 ELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKETFDKINENFS 1023 (1163)
T ss_pred HHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778889999999999999 999999999999999999999 99999999 9999999999999999999999999
No 3
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.84 E-value=3.1e-14 Score=175.10 Aligned_cols=75 Identities=8% Similarity=0.147 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHhhhhhh-HhhhhHhH-HHHhhhhhHHHHHHHHHHHHHHHcc
Q 006828 504 LLEAKRNADDLRAKMESIGFN---SDRALSMLKNTAAMVCQSEND-IDGQQELV-VDEKKLQGETDQYAAEFQAIVNAFR 578 (629)
Q Consensus 504 l~~~~k~i~~Lk~~I~~lg~v---aiee~~~~ker~~fl~~q~~D-~~ak~~l~-~i~~~~~~m~~~f~~~f~~i~~~F~ 578 (629)
+..+..++..+..+|..+||| |+++|+.+.+||+|+..|++| ..++..|. +|..++..+...|..+|..|+.+|+
T Consensus 953 ~~~l~~~l~~l~~~i~~l~~vN~~Ai~~~~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~~~~~~~f~~~f~~~~~~f~ 1032 (1164)
T TIGR02169 953 LEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKREVFMEAFEAINENFN 1032 (1164)
T ss_pred HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888999999999998 999999999999999999999 99999999 9999999999999999999999998
No 4
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.80 E-value=2.9e-15 Score=184.14 Aligned_cols=345 Identities=19% Similarity=0.243 Sum_probs=214.0
Q ss_pred hHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 006828 136 RENEIIALKSEVSGLMGNIENERERLSQACREKDLMKGELDCQVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKK 215 (629)
Q Consensus 136 Rk~Ei~~L~eela~l~~~~~~~ke~l~~L~~~~~~l~~~l~~~~~~l~~l~~~l~ele~~~~~le~q~~~l~~e~~~L~~ 215 (629)
+++++..+..++..+...+..+...+..+......+...+..+...+..+...+..+...+..+...+..+..++..+..
T Consensus 668 ~~~~~~~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 747 (1179)
T TIGR02168 668 TNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEE 747 (1179)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778788888887777777777777777777777777777777766666666666666666666666666666666
Q ss_pred HHhhHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 006828 216 EKNERDGDIEAFKKEKGLLGKRLVGLEKETDDLKLKIKVIVKEKNAIEMQNSEQKVINDELEKEVNKLNEIVLALQKEEK 295 (629)
Q Consensus 216 E~~~l~~~i~~l~~~~~~l~~el~el~~ei~~l~~~ie~l~~el~ele~~~e~l~~el~ele~ela~l~e~l~~l~~~~~ 295 (629)
++..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...
T Consensus 748 e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~-- 825 (1179)
T TIGR02168 748 RIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRER-- 825 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 666665555555555555555555555555555555555554555555555555555555555555554444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 006828 296 VLCGKILELENSCSEAMDEKLEMVLEIKALLDQEREKQKRIERLIEEKDEISHRLEKAVVVLDDKEGEIAKLLREKNDIE 375 (629)
Q Consensus 296 ~l~~~i~~le~~l~~~~~~~~~l~~ei~~l~~e~~e~~~~l~~l~~e~~~le~~i~el~~el~~l~~~leel~~e~~~l~ 375 (629)
+..+..++..+..++..+..++..+... +..+...+..+...+..+...+..+...+..+......+.
T Consensus 826 -----~~~l~~~~~~l~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~ 893 (1179)
T TIGR02168 826 -----LESLERRIAATERRLEDLEEQIEELSED-------IESLAAEIEELEELIEELESELEALLNERASLEEALALLR 893 (1179)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443333333333 4444444444444455555555555555555555556666
Q ss_pred HHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-hhhhccccHH-HHHHHHHHHH
Q 006828 376 ERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNELAD-YKSALDQATL-ERDNAWKDLD-EQRKSGMDLR 452 (629)
Q Consensus 376 e~~~~~e~el~~l~~el~~l~~~l~~le~~~~~le~ei~~l~~~l~~-y~~~le~a~~-~~~~~~~~l~-~~k~~i~~Lk 452 (629)
..+..+...+..+...+..+...+..++..+..+...+.++..++.. +. ++..... .... ..... .+...+..|+
T Consensus 894 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~l~e~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~l~ 971 (1179)
T TIGR02168 894 SELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQE-RLSEEYSLTLEE-AEALENKIEDDEEEAR 971 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCHHH-HHhhccccccCHHHHH
Confidence 66666666666666666666667777777777777777777776663 33 3322110 0000 00000 0345678999
Q ss_pred HHHHHhhhchHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 453 LKLSEMEKRFEEKVEELAKTR----NERETLVDLRKKMESHIGLLAEEKELM 500 (629)
Q Consensus 453 ~eI~~LG~vN~~AIeEyeevk----eRyefL~~Q~~DLe~~~~~L~~e~~~l 500 (629)
..|..||| ||++|+.++ +||+||..|++||...+..|..-+..+
T Consensus 972 ~~i~~lg~----aiee~~~~~~~a~er~~~l~~q~~dL~~~~~~L~~~i~~i 1019 (1179)
T TIGR02168 972 RRLKRLEN----KIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETL 1019 (1179)
T ss_pred HHHHHHHH----HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 999999999 999999999999999999999954433
No 5
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.77 E-value=3.9e-14 Score=172.85 Aligned_cols=59 Identities=19% Similarity=0.160 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHhhhchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006828 443 EQRKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQ 501 (629)
Q Consensus 443 ~~k~~i~~Lk~eI~~LG~vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~ 501 (629)
.+...+..++..|..|||||+.||++|+++.+||+||..++.||...+..|..-+..+.
T Consensus 946 ~~~~~i~~le~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d 1004 (1163)
T COG1196 946 ELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELD 1004 (1163)
T ss_pred HHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999998666553
No 6
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.74 E-value=1.6e-13 Score=168.76 Aligned_cols=165 Identities=16% Similarity=0.205 Sum_probs=105.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 336 IERLIEEKDEISHRLEKAVVVLDDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQ 415 (629)
Q Consensus 336 l~~l~~e~~~le~~i~el~~el~~l~~~leel~~e~~~l~e~~~~~e~el~~l~~el~~l~~~l~~le~~~~~le~ei~~ 415 (629)
+..+...+..+...+..+...+..+...+..+......+...+..+..++..+...+..+...+..+...+..+...+..
T Consensus 849 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~ 928 (1164)
T TIGR02169 849 IKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEA 928 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444444444444444444555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHhhhchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 416 LVNELADYKSALDQATLERDNAWKDLDEQRKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAE 495 (629)
Q Consensus 416 l~~~l~~y~~~le~a~~~~~~~~~~l~~~k~~i~~Lk~eI~~LG~vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~ 495 (629)
+...+..|...+.... .......++..+...+..+..+|..+||||+.|+++|+.+.++|+|+..|++||...+..+..
T Consensus 929 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~l~~~i~~l~~vN~~Ai~~~~~~~~~~~~l~~q~~dl~~~~~~l~~ 1007 (1164)
T TIGR02169 929 LEEELSEIEDPKGEDE-EIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILE 1007 (1164)
T ss_pred HHHHHHHhhhhhhhhh-hcccccCCHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555444432221 111102356789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh
Q 006828 496 EKELMQ 501 (629)
Q Consensus 496 e~~~l~ 501 (629)
-+..+.
T Consensus 1008 ~i~~l~ 1013 (1164)
T TIGR02169 1008 RIEEYE 1013 (1164)
T ss_pred HHHHHH
Confidence 777664
No 7
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.74 E-value=1.7e-11 Score=150.05 Aligned_cols=84 Identities=19% Similarity=0.200 Sum_probs=65.8
Q ss_pred HHhhhhhccchhhhhhhh------------hhHHHHHhhHhHhhhcchhhhhhhhHHHHHHHHHHHHhHHHhHHHHHHHH
Q 006828 94 LAELSGESDQKVSLEIEK------------GLFCVFLMTQMKEMGEGLDEEKNERENEIIALKSEVSGLMGNIENERERL 161 (629)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~vd~~~~~Rk~Ei~~L~eela~l~~~~~~~ke~l 161 (629)
+.+|..-.....++.+++ |||++|.+.+|++.+..-|+.+.....++..|+.++.........++...
T Consensus 789 r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~w~W~~Lf~kvkPLL~~~~~ee~~~~~~~e~~~l~~~l~~~e~~~~ele~~~ 868 (1930)
T KOG0161|consen 789 RKEFKKRLQQLDAIKVIQRNIRAYLKLRTWPWWRLFTKVKPLLKVTKTEEEMRAKEEEIQKLKEELQKSESKRKELEEKL 868 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555566666663 99999999999999999999999999999999999998888888777777
Q ss_pred HHHHHHHHHhhhhhHH
Q 006828 162 SQACREKDLMKGELDC 177 (629)
Q Consensus 162 ~~L~~~~~~l~~~l~~ 177 (629)
.++..+...+...+..
T Consensus 869 ~~~~~e~~~l~~~l~~ 884 (1930)
T KOG0161|consen 869 VKLLEEKNDLQEQLQA 884 (1930)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7776666655554433
No 8
>PRK02224 chromosome segregation protein; Provisional
Probab=99.69 E-value=2.1e-10 Score=137.49 Aligned_cols=87 Identities=16% Similarity=0.156 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhhhhhh-H---hhhhHhH-HHHhhh
Q 006828 485 KMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGFNSDRALSMLKNTAAMVCQSEND-I---DGQQELV-VDEKKL 559 (629)
Q Consensus 485 DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~lg~vaiee~~~~ker~~fl~~q~~D-~---~ak~~l~-~i~~~~ 559 (629)
.|...+..+...+..+...+..+...+..+...|..+- .+++.|..+.++++++.....+ . .+...|. ++....
T Consensus 650 ~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~i~~~~-~~~e~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~ 728 (880)
T PRK02224 650 EAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVE-NELEELEELRERREALENRVEALEALYDEAEELESMYGDLR 728 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444443211 1566677777777777777666 3 2344566 777777
Q ss_pred hhHHHHHHHHHHH
Q 006828 560 QGETDQYAAEFQA 572 (629)
Q Consensus 560 ~~m~~~f~~~f~~ 572 (629)
..|..+|...|..
T Consensus 729 ~~~~~~~~~~~~~ 741 (880)
T PRK02224 729 AELRQRNVETLER 741 (880)
T ss_pred HHHHHHHHHHHHH
Confidence 7777666555543
No 9
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=99.66 E-value=2.9e-11 Score=137.21 Aligned_cols=74 Identities=8% Similarity=0.159 Sum_probs=67.9
Q ss_pred HhhhHHHHHHHHHHHHHHHHhhccc---hHH-HHHHHHHHHHHHhhhhhh-HhhhhHhH-HHHhhhhhHHHHHHHHHHHH
Q 006828 500 MQKNLLEAKRNADDLRAKMESIGFN---SDR-ALSMLKNTAAMVCQSEND-IDGQQELV-VDEKKLQGETDQYAAEFQAI 573 (629)
Q Consensus 500 l~~~l~~~~k~i~~Lk~~I~~lg~v---aie-e~~~~ker~~fl~~q~~D-~~ak~~l~-~i~~~~~~m~~~f~~~f~~i 573 (629)
....+..+..++..+...|.. ||| ||+ +|..+.+||+||..|.+| +.+...++ +|.. ..+|..+|..|
T Consensus 446 y~~~~~~~~~~i~~l~~~L~~-g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy-----~nRfr~~~~~V 519 (569)
T PRK04778 446 YLEMFFEVSDEIEALAEELEE-KPINMEAVNRLLEEATEDVETLEEETEELVENATLTEQLIQY-----ANRYRSDNEEV 519 (569)
T ss_pred HHHHHHHHHHHHHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhccCCCCHHH
Confidence 344556788888999999999 999 999 999999999999999999 99999999 9999 89999999999
Q ss_pred HHHccc
Q 006828 574 VNAFRN 579 (629)
Q Consensus 574 ~~~F~~ 579 (629)
+.+|..
T Consensus 520 ~~~f~~ 525 (569)
T PRK04778 520 AEALNE 525 (569)
T ss_pred HHHHHH
Confidence 999983
No 10
>PRK02224 chromosome segregation protein; Provisional
Probab=99.66 E-value=1.1e-09 Score=131.22 Aligned_cols=42 Identities=5% Similarity=0.041 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHhhhhhh
Q 006828 504 LLEAKRNADDLRAKMESIGFN-SDRALSMLKNTAAMVCQSEND 545 (629)
Q Consensus 504 l~~~~k~i~~Lk~~I~~lg~v-aiee~~~~ker~~fl~~q~~D 545 (629)
...+..++..++..|..+... ..+.|+.+..+|+=+......
T Consensus 622 ~~~~~~~l~~~r~~i~~l~~~~~~~~~e~l~~~~~~~~~~~~~ 664 (880)
T PRK02224 622 NDERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQ 664 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 345666667777777777543 444555555555444444443
No 11
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.58 E-value=2.5e-08 Score=122.88 Aligned_cols=65 Identities=20% Similarity=0.247 Sum_probs=46.4
Q ss_pred CCcHHHHHhhhhhhHHHhhHhHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhHHHhhhhhccchhh
Q 006828 42 EDPSEQIKRLKSLNDLLVHRSHEQRQQVESLSQAKAALEAELSLFGVEKSELLAELSGESDQKVS 106 (629)
Q Consensus 42 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~ 106 (629)
.+...++....-.|..|=++..+..+.|..|...-+.+|..+...-.|+..+..++.-+.+.-.+
T Consensus 911 ~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~ 975 (1930)
T KOG0161|consen 911 KELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINS 975 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555666667777777777778888888877777777777777777777777766665555
No 12
>PRK03918 chromosome segregation protein; Provisional
Probab=99.58 E-value=5e-08 Score=117.14 Aligned_cols=114 Identities=18% Similarity=0.208 Sum_probs=75.9
Q ss_pred cHHHHHHHHHHHHHHHHHhhhchHHhHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 006828 440 DLDEQRKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETL-------------VDLRKKMESHIGLLAEEKELMQKNLLE 506 (629)
Q Consensus 440 ~l~~~k~~i~~Lk~eI~~LG~vN~~AIeEyeevkeRyefL-------------~~Q~~DLe~~~~~L~~e~~~l~~~l~~ 506 (629)
.+..+..++..+..+|..|++. +|..+..++..| ..+...+...+..+..++..+...+..
T Consensus 564 ~~~~~~~~~~~~~~~l~~L~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~i~~ 637 (880)
T PRK03918 564 KLDELEEELAELLKELEELGFE------SVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAE 637 (880)
T ss_pred HHHHHHHHHHHHHHHHhhhccc------hHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666777777777777762 333444444433 344555666777778888888888889
Q ss_pred HHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHhhhhhh-HhhhhHhH-HHHhhh
Q 006828 507 AKRNADDLRAKMESIGFN-SDRALSMLKNTAAMVCQSEND-IDGQQELV-VDEKKL 559 (629)
Q Consensus 507 ~~k~i~~Lk~~I~~lg~v-aiee~~~~ker~~fl~~q~~D-~~ak~~l~-~i~~~~ 559 (629)
+..++..++.++..||.. ..+.|..+..+++-+...... ......+. -+..+.
T Consensus 638 l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~l~~~~~~l~~~i~~l~ 693 (880)
T PRK03918 638 TEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIK 693 (880)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999844 566777777777776666665 44444444 444333
No 13
>PRK03918 chromosome segregation protein; Provisional
Probab=99.51 E-value=1.3e-07 Score=113.49 Aligned_cols=40 Identities=25% Similarity=0.256 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 006828 475 ERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDL 514 (629)
Q Consensus 475 RyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~L 514 (629)
+|+.+...+..+..++..+..++..+...+..+...+..+
T Consensus 660 ~~~~l~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~i~~~ 699 (880)
T PRK03918 660 EYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKL 699 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333
No 14
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=99.49 E-value=1.5e-08 Score=115.26 Aligned_cols=118 Identities=16% Similarity=0.138 Sum_probs=77.7
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---------ccccHHHHHHHHHH
Q 006828 380 CQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNELADYKSALDQATLERDN---------AWKDLDEQRKSGMD 450 (629)
Q Consensus 380 ~~e~el~~l~~el~~l~~~l~~le~~~~~le~ei~~l~~~l~~y~~~le~a~~~~~~---------~~~~l~~~k~~i~~ 450 (629)
.+...+..+...+..+......+...+..+..........+..|...+......... +...+..+...+..
T Consensus 380 el~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~ 459 (569)
T PRK04778 380 ELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEVSDEIEA 459 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444444444444211111 11236788999999
Q ss_pred HHHHHHHhhhchHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 451 LRLKLSEMEKRFEEKVE-ELAKTRNERETLVDLRKKMESHIGLLAEEKE 498 (629)
Q Consensus 451 Lk~eI~~LG~vN~~AIe-EyeevkeRyefL~~Q~~DLe~~~~~L~~e~~ 498 (629)
|...|.. ||||+.||+ +|..+.+||+||..|..||......++.=|.
T Consensus 460 l~~~L~~-g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iq 507 (569)
T PRK04778 460 LAEELEE-KPINMEAVNRLLEEATEDVETLEEETEELVENATLTEQLIQ 507 (569)
T ss_pred HHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 999999999 9999999999999999999999999887443
No 15
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.49 E-value=3.2e-07 Score=114.10 Aligned_cols=146 Identities=10% Similarity=0.135 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHhhccchH-HHHHHHHHHHHHHhhh
Q 006828 466 VEELAKTRNERETLVDLRKKMESHIGLLAEEKELM--QKNLLEAKRNADDLRAKMESIGFNSD-RALSMLKNTAAMVCQS 542 (629)
Q Consensus 466 IeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l--~~~l~~~~k~i~~Lk~~I~~lg~vai-ee~~~~ker~~fl~~q 542 (629)
-.++..+...+..+.....++......+...+..+ ...+..+...+..|..++..++-... .++..+.+.++-+..+
T Consensus 990 e~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~~~~~~~~~~e~~~l~~~~~~l~~~ 1069 (1311)
T TIGR00606 990 EKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEENIDLIKRN 1069 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444445555555555555544 44455555556666666665554433 3888888888888887
Q ss_pred hhh-HhhhhHhH-HHHhhhhhHHHHHHHHHHHHHHHcc-------chhHhHHHHHHHHHHHhhhH-Hhhc-c--------
Q 006828 543 END-IDGQQELV-VDEKKLQGETDQYAAEFQAIVNAFR-------NREKLVEDMKHRVELMQNSV-EAQK-K-------- 603 (629)
Q Consensus 543 ~~D-~~ak~~l~-~i~~~~~~m~~~f~~~f~~i~~~F~-------~~~~~~~~~~~~~~~~~~~~-~~~~-~-------- 603 (629)
..- ..-+..|. -|..+..+... ..|..+...|. ..+-+++|+.+=.--|..|+ .-|- |
T Consensus 1070 ~a~l~g~~k~le~qi~~l~~eL~e---~~yk~a~~ryrka~i~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~n~~~ 1146 (1311)
T TIGR00606 1070 HVLALGRQKGYEKEIKHFKKELRE---PQFRDAEEKYREMMIVMRTTELVNKDLDIYYKTLDQAIMKFHSMKMEEINKII 1146 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776 66666777 67766666633 34444444444 67788999999999999999 7776 2
Q ss_pred cchhhhHhhHH
Q 006828 604 KSFWTVVSSAT 614 (629)
Q Consensus 604 ~~~~~~~~~~~ 614 (629)
+.+|.-+++.|
T Consensus 1147 ~~~w~~~~~~~ 1157 (1311)
T TIGR00606 1147 RDLWRSTYRGQ 1157 (1311)
T ss_pred HHHHHHHcCcc
Confidence 78998886544
No 16
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.46 E-value=3.1e-07 Score=105.89 Aligned_cols=44 Identities=16% Similarity=0.217 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccc
Q 006828 481 DLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGFN 524 (629)
Q Consensus 481 ~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~lg~v 524 (629)
.+.+.+...+..++..++.++.++....-.+..++.....|-+.
T Consensus 465 Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~ 508 (775)
T PF10174_consen 465 EELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASS 508 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhc
Confidence 33444445555555555555555555555555555555555554
No 17
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.40 E-value=8.9e-07 Score=110.18 Aligned_cols=52 Identities=10% Similarity=0.123 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHhhhchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 445 RKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKE 498 (629)
Q Consensus 445 k~~i~~Lk~eI~~LG~vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~ 498 (629)
...+..++.+|..|..-+... .+..+...+..+..+...|.....++.+++.
T Consensus 1027 ~~~l~el~~eI~~l~~~~~~~--~~~~~~~e~~~l~~~~~~l~~~~a~l~g~~k 1078 (1311)
T TIGR00606 1027 ENELKEVEEELKQHLKEMGQM--QVLQMKQEHQKLEENIDLIKRNHVLALGRQK 1078 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555444332 3344444444444444444444444444333
No 18
>PRK01156 chromosome segregation protein; Provisional
Probab=99.38 E-value=2.5e-06 Score=102.68 Aligned_cols=46 Identities=7% Similarity=0.097 Sum_probs=22.1
Q ss_pred HhhhHHHHHHHHHHHHHHHHhhccc------hHHHHHHHHHHHHHHhhhhhh
Q 006828 500 MQKNLLEAKRNADDLRAKMESIGFN------SDRALSMLKNTAAMVCQSEND 545 (629)
Q Consensus 500 l~~~l~~~~k~i~~Lk~~I~~lg~v------aiee~~~~ker~~fl~~q~~D 545 (629)
....+..+...+..++..|..+... ..+.|..+...+.=+....+.
T Consensus 641 ~~~~i~~~~~~i~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 692 (895)
T PRK01156 641 NKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDD 692 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555442 333444444444444444443
No 19
>PRK01156 chromosome segregation protein; Provisional
Probab=99.37 E-value=5.8e-06 Score=99.56 Aligned_cols=81 Identities=11% Similarity=0.197 Sum_probs=44.7
Q ss_pred cHHHHHHHHHHHHHHHHHhhhch---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 006828 440 DLDEQRKSGMDLRLKLSEMEKRF---EEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRA 516 (629)
Q Consensus 440 ~l~~~k~~i~~Lk~eI~~LG~vN---~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~ 516 (629)
.+..+...+..++..|..+.... ....+.|..+..+|..+..+...|...+..+.+.+..+...+..+..++..+..
T Consensus 644 ~i~~~~~~i~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~~~~ 723 (895)
T PRK01156 644 LIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINE 723 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34555555666666665553322 233455555566666666666666666666666666555555555555555555
Q ss_pred HHHh
Q 006828 517 KMES 520 (629)
Q Consensus 517 ~I~~ 520 (629)
.+..
T Consensus 724 ~~~~ 727 (895)
T PRK01156 724 TLES 727 (895)
T ss_pred HHHH
Confidence 4443
No 20
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.35 E-value=7.1e-06 Score=100.15 Aligned_cols=84 Identities=15% Similarity=0.216 Sum_probs=68.6
Q ss_pred cccHHHHHHHHHHHHHHHHHhhhchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 006828 438 WKDLDEQRKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAK 517 (629)
Q Consensus 438 ~~~l~~~k~~i~~Lk~eI~~LG~vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~ 517 (629)
...++.+...+.....++....|+.-.+-.+|+.+...+.++..++++....+..++.++..+...+....+.+..+...
T Consensus 404 ~lele~~~~~l~s~~eev~~~~p~lk~qr~~~e~~~~~~~~l~~el~~~~q~~~~~e~~~~~l~~~~~~~~renk~l~~~ 483 (1822)
T KOG4674|consen 404 KLELERLQNILSSFKEEVKQKAPILKEQRSELERMQETKAELSEELDFSNQKIQKLEKELESLKKQLNDLERENKLLEQQ 483 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677788888888999999999999999999999999999999999988888888888888877777666666555555
Q ss_pred HHhh
Q 006828 518 MESI 521 (629)
Q Consensus 518 I~~l 521 (629)
+..|
T Consensus 484 ~sdl 487 (1822)
T KOG4674|consen 484 ISDL 487 (1822)
T ss_pred HHHH
Confidence 5544
No 21
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.34 E-value=4.6e-06 Score=94.85 Aligned_cols=74 Identities=5% Similarity=0.065 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHhhhhhh-HhhhhHhH-HHHhhhhhHHHHHHHHHHHHHHHcc
Q 006828 505 LEAKRNADDLRAKMESIGFN---SDRALSMLKNTAAMVCQSEND-IDGQQELV-VDEKKLQGETDQYAAEFQAIVNAFR 578 (629)
Q Consensus 505 ~~~~k~i~~Lk~~I~~lg~v---aiee~~~~ker~~fl~~q~~D-~~ak~~l~-~i~~~~~~m~~~f~~~f~~i~~~F~ 578 (629)
.++-+++.....++..+++| |++.|....++-+=|..-..+ -.+++++. +|..++..=-.--.-+|..|+++|.
T Consensus 952 ~el~kkL~~~neelk~ys~VNKkAldQf~nfseQre~L~~R~eELd~s~~sI~eLi~vLdqrK~eai~~TFkqV~knFs 1030 (1200)
T KOG0964|consen 952 KELMKKLHRCNEELKGYSNVNKKALDQFVNFSEQRESLKKRQEELDRSKDSILELITVLDQRKYEAIDLTFKQVKKNFS 1030 (1200)
T ss_pred HHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 44555555566666666666 889998888888888777788 88888998 9999888777777889999999998
No 22
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.32 E-value=3.7e-06 Score=102.60 Aligned_cols=458 Identities=16% Similarity=0.155 Sum_probs=218.0
Q ss_pred chhhhhhhhHHHHHHHHHHHHhHHHh----HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 128 GLDEEKNERENEIIALKSEVSGLMGN----IENERERLSQACREKDLMKGELDCQVKEASRLKDRLIEMEGKERNLRSEI 203 (629)
Q Consensus 128 ~vd~~~~~Rk~Ei~~L~eela~l~~~----~~~~ke~l~~L~~~~~~l~~~l~~~~~~l~~l~~~l~ele~~~~~le~q~ 203 (629)
+|++-+...-.++..++.+.....-. +.....++..+......+..+...++.+++.+...+..+......+...+
T Consensus 24 d~~~~l~~k~~~~~~lk~e~~k~~v~~eq~~~~~ekK~~~l~q~~~~~~~q~~~~~~e~s~l~~~L~~~~~~~~~l~~~~ 103 (1822)
T KOG4674|consen 24 DVFKKLPKKSKDFESLKDEDGKTEVNHEQQLSELEKKILRLEQRLSDLSRQAKLLRNELSDLRNELEQLSSERSNLSWEI 103 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 33344444445555555443322221 22223333333333333333444444444444444444444444444444
Q ss_pred HHHHHHHhHHHHHHhhHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHHHHHHHHHH
Q 006828 204 LVLQSDYGRLKKEKNERDGDIEAFKKEKGLLGKRLVGLEKETDDLKLKIKVIVKEKNAIEMQNSEQKVINDELEKEVNKL 283 (629)
Q Consensus 204 ~~l~~e~~~L~~E~~~l~~~i~~l~~~~~~l~~el~el~~ei~~l~~~ie~l~~el~ele~~~e~l~~el~ele~ela~l 283 (629)
..+......+......+..+.+.+...+.....+++.+...+..+..++......+.+++.........-..++.++..+
T Consensus 104 ~~~~~~~~~l~~~~se~~~qkr~l~~~le~~~~ele~l~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~~vs~q~k~~rl 183 (1822)
T KOG4674|consen 104 DALKLENSQLRRAKSELQEQKRQLMELLERQKAELEALESENKDLNDQLKSSTKTLSELEARLQETQSEDVSSQLKEERL 183 (1822)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444333444444444444455555555555555555555555555555555544444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 006828 284 NEIVLALQKEEKVLCGKILELENSCSEAMDE----KLEMVLEIKALLDQEREKQKRIERLIEEKDEISHRLEKAVVVLDD 359 (629)
Q Consensus 284 ~e~l~~l~~~~~~l~~~i~~le~~l~~~~~~----~~~l~~ei~~l~~e~~e~~~~l~~l~~e~~~le~~i~el~~el~~ 359 (629)
..+..-+.....-+..++......+..+... ...+...+..+..........+..+......+...+..+...+..
T Consensus 184 ~QEksll~s~~~wL~~eL~~~~ekll~~~re~s~~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~eLs~~ie~~~~~ls~ 263 (1822)
T KOG4674|consen 184 EQEKSLLESENKWLSRELSKVNEKLLSLRREHSIEVEQLEEKLSDLKESLAELQEKNKSLKQQNEELSKKIESLNLELSK 263 (1822)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444322222222222222222222 222222222222222222222222222222222222222222222
Q ss_pred HHHH----HHHHHhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006828 360 KEGE----IAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNELADYKSALDQATLERD 435 (629)
Q Consensus 360 l~~~----leel~~e~~~l~e~~~~~e~el~~l~~el~~l~~~l~~le~~~~~le~ei~~l~~~l~~y~~~le~a~~~~~ 435 (629)
+... ..++..+...-.....-+......+...+.++...+..+..-+......+......+.....++......+
T Consensus 264 ~k~t~~s~~~kf~~El~~q~kL~eL~ks~~ee~~~~~~el~~~i~~~~klled~~~~~~e~~d~l~e~~~sl~~~~~~~- 342 (1822)
T KOG4674|consen 264 LKDTAESSEEKFEKELSTQKKLNELWKSKLEELSHEVAELQRAIEELEKLLEDASERNKENTDQLKELEQSLSKLNEKL- 342 (1822)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-
Confidence 2211 11222222222222333334444444444444444444444444444444443333332232222221111
Q ss_pred hccccHHHHHHHHHHHHHHHHHhhhchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 006828 436 NAWKDLDEQRKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLR 515 (629)
Q Consensus 436 ~~~~~l~~~k~~i~~Lk~eI~~LG~vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk 515 (629)
...+..+...+..-......-|..++ +.+...+-..+-+...+..++...+..++.++....-.+..+...+....
T Consensus 343 --~k~~~~le~~l~~an~~~~~~~~~~~--~s~~~a~~s~~~~~~~sLtk~ys~~~~~qqqle~~~lele~~~~~l~s~~ 418 (1822)
T KOG4674|consen 343 --EKKVSRLEGELEDANDSLSATGESSM--VSEKAALASSLIRPGSSLTKLYSKYSKLQQQLESLKLELERLQNILSSFK 418 (1822)
T ss_pred --HHHHHHHHHHHHhhhhhHHhhcccch--hhhHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01122222333333333333333333 33335666788888899999999999999999999999999999999999
Q ss_pred HHHHhhccc---hHHHHHHHHHHHHHHhhhhhh-HhhhhHhH-HHHhhhhhHHHHHHHHHHHHHHHccchhHhHHHHHHH
Q 006828 516 AKMESIGFN---SDRALSMLKNTAAMVCQSEND-IDGQQELV-VDEKKLQGETDQYAAEFQAIVNAFRNREKLVEDMKHR 590 (629)
Q Consensus 516 ~~I~~lg~v---aiee~~~~ker~~fl~~q~~D-~~ak~~l~-~i~~~~~~m~~~f~~~f~~i~~~F~~~~~~~~~~~~~ 590 (629)
.++....|+ +-.+|+.+...+.|+...+++ ..-...++ .+..+. ..|......-.--..-+.|+.+|
T Consensus 419 eev~~~~p~lk~qr~~~e~~~~~~~~l~~el~~~~q~~~~~e~~~~~l~--------~~~~~~~renk~l~~~~sdlsrq 490 (1822)
T KOG4674|consen 419 EEVKQKAPILKEQRSELERMQETKAELSEELDFSNQKIQKLEKELESLK--------KQLNDLERENKLLEQQISDLSRQ 490 (1822)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998 888999999999999999886 55555444 333333 22222222222345566777777
Q ss_pred HHHHhhhH
Q 006828 591 VELMQNSV 598 (629)
Q Consensus 591 ~~~~~~~~ 598 (629)
+--|-...
T Consensus 491 v~~Ll~el 498 (1822)
T KOG4674|consen 491 VNVLLLEL 498 (1822)
T ss_pred HHHHHHHH
Confidence 76666665
No 23
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.31 E-value=8.5e-06 Score=94.19 Aligned_cols=56 Identities=21% Similarity=0.239 Sum_probs=45.2
Q ss_pred CCcHHHHHhhhhhhHHHhhHhHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhHHHhh
Q 006828 42 EDPSEQIKRLKSLNDLLVHRSHEQRQQVESLSQAKAALEAELSLFGVEKSELLAEL 97 (629)
Q Consensus 42 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~ 97 (629)
+-....|..|.+.+..+..|...-|.-++.++.-=+.+-..|..+..++.-|...|
T Consensus 110 d~~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L 165 (775)
T PF10174_consen 110 DKAQEQFERLQAERERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEML 165 (775)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33577899999999999999999888888888776677777777777777777776
No 24
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=99.31 E-value=6.6e-06 Score=92.59 Aligned_cols=204 Identities=19% Similarity=0.173 Sum_probs=119.5
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHhh
Q 006828 380 CQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNELADYKSALDQATLERDNAWKDLDEQRKSGMDLRLKLSEME 459 (629)
Q Consensus 380 ~~e~el~~l~~el~~l~~~l~~le~~~~~le~ei~~l~~~l~~y~~~le~a~~~~~~~~~~l~~~k~~i~~Lk~eI~~LG 459 (629)
.+...+..|+.++...+..+..++.........+..+...+......+..+...-......+..+...+..+..+.....
T Consensus 306 ~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak 385 (522)
T PF05701_consen 306 SLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAK 385 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333444444444444444444444322212212345666777777777777777
Q ss_pred hchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh--------ccc--hHHHH
Q 006828 460 KRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESI--------GFN--SDRAL 529 (629)
Q Consensus 460 ~vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~l--------g~v--aiee~ 529 (629)
..-..+-.+...++..++.........+.++.....+++.....-..+-..++.|...-... |.| +.++|
T Consensus 386 ~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala~ik~l~e~~~~~~~~~~~~~~~Vtls~eEy 465 (522)
T PF05701_consen 386 KEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALALAEIKALSESESSSRASDSESSSKVTLSLEEY 465 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCCCeeecHHHH
Confidence 77777777777788888888888888888888888877777666666666666554433222 234 99999
Q ss_pred HHHHHHHHHHhhhhhhHhhhhHhH-HHHhhhhhHHHHHHHHHHHHHHHccchhHhHHHHHHHHHHHhhhH-Hh
Q 006828 530 SMLKNTAAMVCQSENDIDGQQELV-VDEKKLQGETDQYAAEFQAIVNAFRNREKLVEDMKHRVELMQNSV-EA 600 (629)
Q Consensus 530 ~~~ker~~fl~~q~~D~~ak~~l~-~i~~~~~~m~~~f~~~f~~i~~~F~~~~~~~~~~~~~~~~~~~~~-~~ 600 (629)
..|+.|+.-.... |...+. .+..++ +++..=..--..++.+.++++.++.+. +|
T Consensus 466 ~~L~~ka~e~ee~-----a~kkva~A~aqve------------~ak~se~e~l~kle~~~~e~~~~k~al~~A 521 (522)
T PF05701_consen 466 ESLSKKAEEAEEL-----AEKKVAAAMAQVE------------AAKASEKEILEKLEEAMKEIEERKEALEEA 521 (522)
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999998766555 333333 333333 344443444556777788888888777 65
No 25
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=99.10 E-value=4e-05 Score=87.69 Aligned_cols=154 Identities=16% Similarity=0.229 Sum_probs=108.4
Q ss_pred HHHhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHH
Q 006828 366 KLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNELADYKSALDQATLERDNAWKDLDEQR 445 (629)
Q Consensus 366 el~~e~~~l~e~~~~~e~el~~l~~el~~l~~~l~~le~~~~~le~ei~~l~~~l~~y~~~le~a~~~~~~~~~~l~~~k 445 (629)
++..+...|......++..+..+.....++.+.-..+..+...+..+..+....+..+...-.. .+..-...+...
T Consensus 405 eleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~----~~q~ls~~~Q~~ 480 (1195)
T KOG4643|consen 405 ELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEE----LDQLLSLQDQLE 480 (1195)
T ss_pred HHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHH----HHHHHHHHHHHH
Confidence 3334444455555555555555555555555555555555555555555555544443221111 111122456777
Q ss_pred HHHHHHHHHHHHhhhchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhcc
Q 006828 446 KSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGF 523 (629)
Q Consensus 446 ~~i~~Lk~eI~~LG~vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~lg~ 523 (629)
.....++..|+.+|....+++.++.+.-.+++|+..|+.....++.-+......+...+..+.++-..|-.+|..|..
T Consensus 481 ~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 481 AETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKT 558 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 788888899999999999999999999999999999999999999999888888888888888888888888888876
No 26
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.07 E-value=1.7e-05 Score=90.84 Aligned_cols=184 Identities=14% Similarity=0.131 Sum_probs=104.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 336 IERLIEEKDEISHRLEKAVVVLDDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQ 415 (629)
Q Consensus 336 l~~l~~e~~~le~~i~el~~el~~l~~~leel~~e~~~l~e~~~~~e~el~~l~~el~~l~~~l~~le~~~~~le~ei~~ 415 (629)
+..+..++..+...+.........+...+.........+..++..+-.....+..+.......+..+..++.++..+-..
T Consensus 845 ~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~ 924 (1174)
T KOG0933|consen 845 ISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKAN 924 (1174)
T ss_pred HHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHH
Confidence 33333333333333333333333344444444444444444444444444444444444444555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHhh----------hhccccHHHHHHHHHHHHHHHHHhh-hchHHhHHHHHHHHHHHHHHHHHHH
Q 006828 416 LVNELADYKSALDQATLER----------DNAWKDLDEQRKSGMDLRLKLSEME-KRFEEKVEELAKTRNERETLVDLRK 484 (629)
Q Consensus 416 l~~~l~~y~~~le~a~~~~----------~~~~~~l~~~k~~i~~Lk~eI~~LG-~vN~~AIeEyeevkeRyefL~~Q~~ 484 (629)
+...+..+...++.+..+. +=-..+....+.++..|+..+..|+ .||+.++.=++.+..+|..+...++
T Consensus 925 ~~k~v~~l~~k~~wi~~ek~~fgk~gt~yDf~~~~p~~are~l~~Lq~k~~~l~k~vn~~~m~mle~~E~~~~~lk~k~~ 1004 (1174)
T KOG0933|consen 925 ARKEVEKLLKKHEWIGDEKRLFGKKGTDYDFESYDPHEAREELKKLQEKKEKLEKTVNPKNMDMLERAEEKEAALKTKKE 1004 (1174)
T ss_pred HHHHHHHHHHhccchhHHHHhhcCCCCccccccCCHhHHHHHHHHhhHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444332110 0001246678899999999999887 5889888888888777776655554
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhhhhhhHhhhhHhH-HHHhhhhhHH
Q 006828 485 KMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGFNSDRALSMLKNTAAMVCQSENDIDGQQELV-VDEKKLQGET 563 (629)
Q Consensus 485 DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~lg~vaiee~~~~ker~~fl~~q~~D~~ak~~l~-~i~~~~~~m~ 563 (629)
-++.- +..+. +|..+|+.-.
T Consensus 1005 ~Ie~D-----------------------------------------------------------k~kI~ktI~~lDe~k~ 1025 (1174)
T KOG0933|consen 1005 IIEKD-----------------------------------------------------------KSKIKKTIEKLDEKKR 1025 (1174)
T ss_pred HHHhh-----------------------------------------------------------HHHHHHHHHHHHHHHH
Confidence 44433 33344 7888888888
Q ss_pred HHHHHHHHHHHHHcc
Q 006828 564 DQYAAEFQAIVNAFR 578 (629)
Q Consensus 564 ~~f~~~f~~i~~~F~ 578 (629)
+....+|..||..|+
T Consensus 1026 ~~L~kaw~~VN~dFG 1040 (1174)
T KOG0933|consen 1026 EELNKAWEKVNKDFG 1040 (1174)
T ss_pred HHHHHHHHHHhhhHH
Confidence 888899999999998
No 27
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.06 E-value=0.00013 Score=85.13 Aligned_cols=69 Identities=12% Similarity=0.029 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhhccc---hHHHHHHHHHHHHHHhhhhhh-HhhhhHhH-HHHhhhhhHHHHHHHHHHHHHHHcc
Q 006828 510 NADDLRAKMESIGFN---SDRALSMLKNTAAMVCQSEND-IDGQQELV-VDEKKLQGETDQYAAEFQAIVNAFR 578 (629)
Q Consensus 510 ~i~~Lk~~I~~lg~v---aiee~~~~ker~~fl~~q~~D-~~ak~~l~-~i~~~~~~m~~~f~~~f~~i~~~F~ 578 (629)
.+..|...++.+|.| +|.+|.+--.-|.=--.-.++ ..-.+... ...++.+.=-..|...|..|.....
T Consensus 1079 ~i~~lE~~~~~l~~vd~~~i~eY~~k~~~y~~rv~~l~~~t~kr~~~re~l~~Lrk~RldEFm~gf~~Is~kLk 1152 (1293)
T KOG0996|consen 1079 KIALLEKRVEELREVDLGVIAEYAKKVELYLKRVAELEKFTQKRDEHREKLEELRKRRLDEFMAGFNIISMKLK 1152 (1293)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888766 777887655444222222222 33333333 4455554445678888888876654
No 28
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.03 E-value=0.00016 Score=84.34 Aligned_cols=98 Identities=19% Similarity=0.257 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHhhhchHHhHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHhhhHHH
Q 006828 444 QRKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKK-----------------MESHIGLLAEEKELMQKNLLE 506 (629)
Q Consensus 444 ~k~~i~~Lk~eI~~LG~vN~~AIeEyeevkeRyefL~~Q~~D-----------------Le~~~~~L~~e~~~l~~~l~~ 506 (629)
....+..++..+..|.........++..+..+.+.|..|... +.++++.++.+++.+++.-..
T Consensus 804 ~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e~~qe~~~K 883 (1293)
T KOG0996|consen 804 LEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKVVDKKRLKELEEQIEELKKEVEELQEKAAK 883 (1293)
T ss_pred HHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 345556666666666666666666666666666666666544 444456666666666533222
Q ss_pred HHHHHHHHHHHHHhhccc----hHHHHHHHHHHHHHHhhh
Q 006828 507 AKRNADDLRAKMESIGFN----SDRALSMLKNTAAMVCQS 542 (629)
Q Consensus 507 ~~k~i~~Lk~~I~~lg~v----aiee~~~~ker~~fl~~q 542 (629)
+.+++.|+..|..+|++ --...+.+.++.+++..-
T Consensus 884 -k~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~ 922 (1293)
T KOG0996|consen 884 -KARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEAD 922 (1293)
T ss_pred -HHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHH
Confidence 58899999999999997 334778888888888543
No 29
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.02 E-value=4.4e-11 Score=141.06 Aligned_cols=486 Identities=19% Similarity=0.240 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhhhhhhhhHHHhhhhhccchhhhhhh-hhhHHHHHhhHhHhhhcchh---hhhhhhHH
Q 006828 63 HEQRQQVESLSQAKAALEAELSLFGVEKSELLAELSGESDQKVSLEIE-KGLFCVFLMTQMKEMGEGLD---EEKNEREN 138 (629)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~vd---~~~~~Rk~ 138 (629)
.+-..||+.++.+++.|+..=...-.|+++|...+..+....+.++-. + .+++++.+.+..+| ..++.-..
T Consensus 134 ~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K-----~lE~qL~El~~klee~er~~~el~~ 208 (859)
T PF01576_consen 134 AELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRK-----QLEAQLNELQAKLEESERQRNELTE 208 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHh-----hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999999999888888765 4 44555555555555 34444445
Q ss_pred HHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 006828 139 EIIALKSEVSGLMGNIENERERLSQACREKDLMKGELDCQVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKN 218 (629)
Q Consensus 139 Ei~~L~eela~l~~~~~~~ke~l~~L~~~~~~l~~~l~~~~~~l~~l~~~l~ele~~~~~le~q~~~l~~e~~~L~~E~~ 218 (629)
....|..++.++...+......+..+......+...+..+...+..-......+...+..++..+..+...++.-.....
T Consensus 209 ~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~ 288 (859)
T PF01576_consen 209 QKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKS 288 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 55566666666666666666666666665555555555555555444444444444444444444444443333222222
Q ss_pred hHHHhHHHHHHHHHHH----------------------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHHH
Q 006828 219 ERDGDIEAFKKEKGLL----------------------GKRLVGLEKETDDLKLKIKVIVKEKNAIEMQNSEQKVINDEL 276 (629)
Q Consensus 219 ~l~~~i~~l~~~~~~l----------------------~~el~el~~ei~~l~~~ie~l~~el~ele~~~e~l~~el~el 276 (629)
.+...+..+..++..+ ...+..+...++.....+..+......+..+++.+...+...
T Consensus 289 ~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~ 368 (859)
T PF01576_consen 289 ELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKA 368 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222222221 112222222222222222222222222222222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 006828 277 EKEVNKLNEIVLALQKEEKVLCGKILELENSCSEAMDEKLEMVLEIKALLDQEREKQKRIERLIEEKDEISHRLEKAVVV 356 (629)
Q Consensus 277 e~ela~l~e~l~~l~~~~~~l~~~i~~le~~l~~~~~~~~~l~~ei~~l~~e~~e~~~~l~~l~~e~~~le~~i~el~~e 356 (629)
....+.+......+...+......+..+...+..+......+..++-.+... +..+...+..+......+..+
T Consensus 369 ~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~-------lee~~e~~e~lere~k~L~~E 441 (859)
T PF01576_consen 369 QAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNE-------LEELQEQLEELERENKQLQDE 441 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhh-------hHHHHHHHHHHHHHHHHHHHh
Confidence 2222222222222222211111222222222222222222222222222222 222222222333333333333
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH---HHHHHH-
Q 006828 357 LDDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNELA-DYKS---ALDQAT- 431 (629)
Q Consensus 357 l~~l~~~leel~~e~~~l~e~~~~~e~el~~l~~el~~l~~~l~~le~~~~~le~ei~~l~~~l~-~y~~---~le~a~- 431 (629)
+.++...+...-.....|......++.++.+++..+.++...+...+..+-++...+..+...+. .+.. .++..+
T Consensus 442 l~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr 521 (859)
T PF01576_consen 442 LEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRR 521 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 33333333333334444555555555666666666666666665555555555555555555443 2221 111111
Q ss_pred ---HhhhhccccH-------HHHHHHHHHHHHHHHHhhhchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006828 432 ---LERDNAWKDL-------DEQRKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQ 501 (629)
Q Consensus 432 ---~~~~~~~~~l-------~~~k~~i~~Lk~eI~~LG~vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~ 501 (629)
..+..+...+ ..+-...+.|...|.+|..-...+...-......+..+..+..||...+.......+.+.
T Consensus 522 ~~qr~l~~le~~LE~E~k~r~~~~r~kkKLE~~l~eLe~~ld~~n~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~ 601 (859)
T PF01576_consen 522 NHQRQLESLEAELEEERKERAEALREKKKLESDLNELEIQLDHANRANEEAQKQLKKLQAQLKDLQRELEEAQRAREELR 601 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 0111111111 112233344444555554322222222233333344455666666666665555555666
Q ss_pred hhHHHHHHHHHHHHHHHHhhccc----------hHHHHHHHHHHHHHHhhhhhh-HhhhhHhH-HHHhhhh
Q 006828 502 KNLLEAKRNADDLRAKMESIGFN----------SDRALSMLKNTAAMVCQSEND-IDGQQELV-VDEKKLQ 560 (629)
Q Consensus 502 ~~l~~~~k~i~~Lk~~I~~lg~v----------aiee~~~~ker~~fl~~q~~D-~~ak~~l~-~i~~~~~ 560 (629)
..+..+.+++..|..++..+..- |..+...+.+|++-++.+... ...+..|. -|..+..
T Consensus 602 ~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~el~e~~~~~~~l~~~~~~l~~~kr~le~~i~~l~~ 672 (859)
T PF01576_consen 602 EQLAVSERRLRALQAELEELREALEQAERARKQAESELDELQERLNELTSQNSSLSEEKRKLEAEIQQLEE 672 (859)
T ss_dssp -----------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 66667777777777777777763 566889999999999988888 77777776 5555543
No 30
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.01 E-value=0.00015 Score=82.87 Aligned_cols=192 Identities=24% Similarity=0.248 Sum_probs=90.2
Q ss_pred HhhHhHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhHHHhhhhhccchhhhhhhhhhHHHHHhhHhHhhhcchhhhhhhhH
Q 006828 58 LVHRSHEQRQQVESLSQAKAALEAELSLFGVEKSELLAELSGESDQKVSLEIEKGLFCVFLMTQMKEMGEGLDEEKNERE 137 (629)
Q Consensus 58 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~Rk 137 (629)
+++||...+.+|..|-.- ++..|+.--.|+.+|. .|-..-..+.+++.-- | |.++..-.
T Consensus 178 im~ET~qK~ekI~ell~y---ieerLreLEeEKeeL~-~Yqkldk~rr~lEYti-----Y------------drEl~E~~ 236 (1200)
T KOG0964|consen 178 IMEETKQKREKINELLKY---IEERLRELEEEKEELE-KYQKLDKERRSLEYTI-----Y------------DRELNEIN 236 (1200)
T ss_pred HHHHHhhhHHHHHHHHHH---HHHHHHHHHHhHHHHH-HHHHHHHhHhhhhhhh-----h------------hhHHHHHH
Confidence 689999999999998764 6666666666666653 2333333333333221 1 22222222
Q ss_pred HHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 006828 138 NEIIALKSEVSGLMGNIENERERLSQACREKDLMKGELDCQVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEK 217 (629)
Q Consensus 138 ~Ei~~L~eela~l~~~~~~~ke~l~~L~~~~~~l~~~l~~~~~~l~~l~~~l~ele~~~~~le~q~~~l~~e~~~L~~E~ 217 (629)
.++..|. ......-..-......++.......++.-.+.+++..+..+......+..+........
T Consensus 237 ~~l~~le--------------~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~k 302 (1200)
T KOG0964|consen 237 GELERLE--------------EDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKK 302 (1200)
T ss_pred HHHHHHH--------------HHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2233332 22222222222233333333444444555555555555555555555555444444444
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHHHHHHHHHHH
Q 006828 218 NERDGDIEAFKKEKGLLGKRLVGLEKETDDLKLKIKVIVKEKNAIEMQNSEQKVINDELEKEVNKLN 284 (629)
Q Consensus 218 ~~l~~~i~~l~~~~~~l~~el~el~~ei~~l~~~ie~l~~el~ele~~~e~l~~el~ele~ela~l~ 284 (629)
..++-.+..++.++....+.-......+..+...|.....++..+...+..+..+=..+...++.++
T Consensus 303 t~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~ 369 (1200)
T KOG0964|consen 303 TKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLE 369 (1200)
T ss_pred hhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444444444444444444433333333333333
No 31
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.00 E-value=0.00017 Score=82.78 Aligned_cols=334 Identities=15% Similarity=0.129 Sum_probs=164.2
Q ss_pred hhHHHHHhhH-------hHhhhcchhhhhhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 006828 112 GLFCVFLMTQ-------MKEMGEGLDEEKNERENEIIALKSEVSGLMGNIENERERLSQACREKDLMKGELDCQVKEASR 184 (629)
Q Consensus 112 ~~~~~~~~~~-------~~~~~~~vd~~~~~Rk~Ei~~L~eela~l~~~~~~~ke~l~~L~~~~~~l~~~l~~~~~~l~~ 184 (629)
.++.+|.-.+ ++.|--.|-++|+-+|.||..+-++++|-.-|-.+++....-+......+.+--..++.++.=
T Consensus 126 ~vq~lF~SVqLNvNNP~FLIMQGrITkVLNMKp~EILsMvEEAAGTrmye~kKe~A~ktiekKetKlkEi~~lL~eeI~P 205 (1174)
T KOG0933|consen 126 KVQDLFCSVQLNVNNPHFLIMQGRITKVLNMKPSEILSMVEEAAGTRMYENKKEAAEKTIEKKETKLKEINTLLREEILP 205 (1174)
T ss_pred HHHHHHHHhcccCCCCceEEecccchhhhcCCcHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 4555564443 245666677999999999999999999999988888877777766665554444444444432
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHhhHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 006828 185 LKDRLIEMEG---KERNLRSEILVLQSDYGRLKKEKNERDGDIEAFKKEKGLLGKRLVGLEKETDDLKLKIKVIVKEKNA 261 (629)
Q Consensus 185 l~~~l~ele~---~~~~le~q~~~l~~e~~~L~~E~~~l~~~i~~l~~~~~~l~~el~el~~ei~~l~~~ie~l~~el~e 261 (629)
--..+.+-+. .+..+...+.++.+-+-.++. -........+...+.+....+..+.........+|..+..++.+
T Consensus 206 ~l~KLR~Ers~~lE~q~~~~dle~l~R~~ia~eY--~~~~~~~~~~~~~i~e~~~~i~~l~e~~~k~~~ei~~le~~ike 283 (1174)
T KOG0933|consen 206 RLEKLREERSQYLEYQKINRDLERLSRICIAYEY--LQAEEKRKNSAHEIEEMKDKIAKLDESLGKTDKEIESLEKEIKE 283 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 2222222222 222223333333333322221 11111222233333333333444444444444444444444444
Q ss_pred HHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 262 IEMQNSEQKVINDELEKEVNKLNEIVLALQKEEKVLCGKILELENSCSEAMDEKLEMVLEIKALLDQEREKQKRIERLIE 341 (629)
Q Consensus 262 le~~~e~l~~el~ele~ela~l~e~l~~l~~~~~~l~~~i~~le~~l~~~~~~~~~l~~ei~~l~~e~~e~~~~l~~l~~ 341 (629)
+....+ .+....+..|...+.++...+-.....+.-....|.........+...+......+.....+..
T Consensus 284 i~~~rd------~em~~~~~~L~~~~~~~~~~~tr~~t~l~~~~~tl~~e~~k~e~i~~~i~e~~~~l~~k~~~~~---- 353 (1174)
T KOG0933|consen 284 IEQQRD------AEMGGEVKALEDKLDSLQNEITREETSLNLKKETLNGEEEKLEEIRKNIEEDRKKLKEKEKAMA---- 353 (1174)
T ss_pred HHHHHH------HHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHh----
Confidence 333222 1223333444455555544433333334444444444444444444444444444333333333
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 342 EKDEISHRLEKAVVVLDDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNELA 421 (629)
Q Consensus 342 e~~~le~~i~el~~el~~l~~~leel~~e~~~l~e~~~~~e~el~~l~~el~~l~~~l~~le~~~~~le~ei~~l~~~l~ 421 (629)
........+.....+....++........+..-+..-+.+-..+..++...+..++.....+......+.++...+.
T Consensus 354 ---~~~~~~~~~ke~~~~~s~~~e~~e~~~eslt~G~Ss~~~~e~~l~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk 430 (1174)
T KOG0933|consen 354 ---KVEEGYEKLKEAFQEDSKLLEKAEELVESLTAGLSSNEDEEKTLEDQLRDAKITLSEASTEIKQAKLKLEHLRKELK 430 (1174)
T ss_pred ---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444445555544445544444444444445555555555555555555555555555555554
Q ss_pred HHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHhhh
Q 006828 422 DYKSALDQATLERDNAWKDLDEQRKSGMDLRLKLSEMEK 460 (629)
Q Consensus 422 ~y~~~le~a~~~~~~~~~~l~~~k~~i~~Lk~eI~~LG~ 460 (629)
........+...+......++..+..+..|+..+..||.
T Consensus 431 ~~e~e~~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l~~ 469 (1174)
T KOG0933|consen 431 LREGELATASAEYVKDIEELDALQNEVEKLKKRLQSLGY 469 (1174)
T ss_pred hhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 333333333212222134567777788888888877774
No 32
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=98.95 E-value=1.2e-10 Score=137.46 Aligned_cols=553 Identities=17% Similarity=0.221 Sum_probs=0.0
Q ss_pred CCCcHHHHHhhhhhhHHHhhHhHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhHHHhhhhhccchhhhhhhhhhHHHHHhh
Q 006828 41 MEDPSEQIKRLKSLNDLLVHRSHEQRQQVESLSQAKAALEAELSLFGVEKSELLAELSGESDQKVSLEIEKGLFCVFLMT 120 (629)
Q Consensus 41 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (629)
.+|.+-++.+|-...+.|-.+-.+=+.+++.-+.++..|...|...-.+++.|+..+..-.+....+...- - -+.+
T Consensus 224 Lee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~ql--s--k~~~ 299 (859)
T PF01576_consen 224 LEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQL--S--KLNA 299 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH--H--HHhh
Confidence 45566677777777777777777777788888888888888888888888888888776555555544330 0 1122
Q ss_pred HhHhhhcchhhhhhhhHHHH----HHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 006828 121 QMKEMGEGLDEEKNERENEI----IALKSEVSGLMGNIENERERLSQACREKDLMKGELDCQVKEASRLKDRLIEMEGKE 196 (629)
Q Consensus 121 ~~~~~~~~vd~~~~~Rk~Ei----~~L~eela~l~~~~~~~ke~l~~L~~~~~~l~~~l~~~~~~l~~l~~~l~ele~~~ 196 (629)
.+...+..+|.....+-.++ +.|...+.++...+.........+......+...+..+...+.........+++..
T Consensus 300 El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKq 379 (859)
T PF01576_consen 300 ELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQ 379 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23334444455444444443 34555677777777888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHHH
Q 006828 197 RNLRSEILVLQSDYGRLKKEKNERDGDIEAFKKEKGLLGKRLVGLEKETDDLKLKIKVIVKEKNAIEMQNSEQKVINDEL 276 (629)
Q Consensus 197 ~~le~q~~~l~~e~~~L~~E~~~l~~~i~~l~~~~~~l~~el~el~~ei~~l~~~ie~l~~el~ele~~~e~l~~el~el 276 (629)
..+...+..+...+..+..+++.+......+...+..+...+..+...+..+......+..++.++...+......++++
T Consensus 380 r~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eL 459 (859)
T PF01576_consen 380 RKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHEL 459 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHH
Confidence 88888887777777666666555554444444444444444444444444444444444444444443333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHH
Q 006828 277 EKEVNKLNEIVLALQKEEKVLCGKILELENSCSEAMDEKLEMVLEI---------------KALLDQEREKQKRIERLIE 341 (629)
Q Consensus 277 e~ela~l~e~l~~l~~~~~~l~~~i~~le~~l~~~~~~~~~l~~ei---------------~~l~~e~~e~~~~l~~l~~ 341 (629)
+.....|...+..+...+..+.+.+...+...-.+.-.+..+..++ ..+...+..++..++.-..
T Consensus 460 ek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~le~~LE~E~k 539 (859)
T PF01576_consen 460 EKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQLESLEAELEEERK 539 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHhHHHHHHH
Confidence 3333333333333333322222222222222111111111111111 1111121222222221111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 342 EKDEISHRLEKAVVVLDDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNELA 421 (629)
Q Consensus 342 e~~~le~~i~el~~el~~l~~~leel~~e~~~l~e~~~~~e~el~~l~~el~~l~~~l~~le~~~~~le~ei~~l~~~l~ 421 (629)
....+......+...+.++...++........+...+..+...+..++..+.........+...+...+..+..+...+.
T Consensus 540 ~r~~~~r~kkKLE~~l~eLe~~ld~~n~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~ele 619 (859)
T PF01576_consen 540 ERAEALREKKKLESDLNELEIQLDHANRANEEAQKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELE 619 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111111222222222222222222222333333333333333333333332223232232223333333333333
Q ss_pred HHHHHHHHHH-------Hhhhhcc-------ccHHHHHHHHHHHHHHHHHhhhchHHhHHHHHHHHHHHHHHHHHHHHHH
Q 006828 422 DYKSALDQAT-------LERDNAW-------KDLDEQRKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKKME 487 (629)
Q Consensus 422 ~y~~~le~a~-------~~~~~~~-------~~l~~~k~~i~~Lk~eI~~LG~vN~~AIeEyeevkeRyefL~~Q~~DLe 487 (629)
.+...++.+. ....++. ..-..+......|...|..|.........++..+.+++.....+...|.
T Consensus 620 e~~~~~~~a~r~rk~aE~el~e~~~~~~~l~~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ek~kka~~~~~~l~ 699 (859)
T PF01576_consen 620 ELREALEQAERARKQAESELDELQERLNELTSQNSSLSEEKRKLEAEIQQLEEELEEEQSEAEAAEEKAKKAQAQAAQLA 699 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHH
Confidence 3333222221 1111111 1112334455667777888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccc----hHHHHHHHHHHHHHHhhhhhh-HhhhhHhH-HHHhhhhh
Q 006828 488 SHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGFN----SDRALSMLKNTAAMVCQSEND-IDGQQELV-VDEKKLQG 561 (629)
Q Consensus 488 ~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~lg~v----aiee~~~~ker~~fl~~q~~D-~~ak~~l~-~i~~~~~~ 561 (629)
..+..-+.-...+......+...+++|+..|..+... +-..+..+-.|...|..+.+. ..-+.... .+..++..
T Consensus 700 ~eL~~Eq~~~~~le~~k~~LE~q~keLq~rl~e~E~~~~~~~k~~i~kLE~ri~eLE~~Le~E~r~~~~~~k~~rk~er~ 779 (859)
T PF01576_consen 700 EELRQEQDHNQHLEKEKKALERQVKELQARLEEAEQSALKGGKKQIAKLEARIRELEEELESEQRRRAEAQKQLRKLERR 779 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8888777777777777788888999999999998886 234666777777778877777 66666666 77777766
Q ss_pred HHHHHHHHHHHHHHHccchhHhHHHHHHHHHHHhhhH
Q 006828 562 ETDQYAAEFQAIVNAFRNREKLVEDMKHRVELMQNSV 598 (629)
Q Consensus 562 m~~~f~~~f~~i~~~F~~~~~~~~~~~~~~~~~~~~~ 598 (629)
++.. .-..+.=.+++..=...|+.+...+-.++..+
T Consensus 780 ~kEl-~~q~ee~~k~~~~~~d~~~kl~~k~k~~krq~ 815 (859)
T PF01576_consen 780 VKEL-QFQVEEERKNAERLQDLVDKLQLKLKQLKRQL 815 (859)
T ss_dssp -------------------------------------
T ss_pred HHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 6554 22233334444433344444444444444444
No 33
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.93 E-value=0.00036 Score=81.48 Aligned_cols=181 Identities=20% Similarity=0.298 Sum_probs=75.0
Q ss_pred HHHHhhhhhhhhHHHhhhhhccchhhhh-------------hhhhhHHHHHhhHhHhhhcchhhhhhhhHHHHHHHHHHH
Q 006828 81 AELSLFGVEKSELLAELSGESDQKVSLE-------------IEKGLFCVFLMTQMKEMGEGLDEEKNERENEIIALKSEV 147 (629)
Q Consensus 81 ~~l~~~~~~~~~l~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~vd~~~~~Rk~Ei~~L~eel 147 (629)
..+.....+++.|..++....+....++ -..+|.-||-..+-..-. ...+.........|.+.+
T Consensus 228 ~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~---~~~i~~~qek~~~l~~ki 304 (1074)
T KOG0250|consen 228 ELIDLKEEEIKNLKKKIKEEEEKLDNLEQLEDLKENLEQLKAKMAWAWVNEVERQLNNQ---EEEIKKKQEKVDTLQEKI 304 (1074)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555444433222 222788888444322211 122333333344444444
Q ss_pred HhHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHhHHHH
Q 006828 148 SGLMGNIENERERLSQACREKDLMKGELDCQVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKNERDGDIEAF 227 (629)
Q Consensus 148 a~l~~~~~~~ke~l~~L~~~~~~l~~~l~~~~~~l~~l~~~l~ele~~~~~le~q~~~l~~e~~~L~~E~~~l~~~i~~l 227 (629)
.............+...+..++.+....+....++......+..+......++.++......+..++...+.+...|..+
T Consensus 305 ~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~ 384 (1074)
T KOG0250|consen 305 EEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADL 384 (1074)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444444444444444444444444444444444444444333
Q ss_pred HHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 006828 228 KKEK-GLLGKRLVGLEKETDDLKLKIKVIVKEKNAIEM 264 (629)
Q Consensus 228 ~~~~-~~l~~el~el~~ei~~l~~~ie~l~~el~ele~ 264 (629)
..+. ..+..++.+..+.+..|+.+++.++..+..+..
T Consensus 385 ~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~ 422 (1074)
T KOG0250|consen 385 EKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLRE 422 (1074)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 223333333333333333333333333333333
No 34
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.92 E-value=0.00028 Score=79.59 Aligned_cols=115 Identities=16% Similarity=0.187 Sum_probs=78.3
Q ss_pred HHHhhHhHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhHHHhhhhhccchhhhhhhhhhHHHHHhhHhHhhhcchhhhhhh
Q 006828 56 DLLVHRSHEQRQQVESLSQAKAALEAELSLFGVEKSELLAELSGESDQKVSLEIEKGLFCVFLMTQMKEMGEGLDEEKNE 135 (629)
Q Consensus 56 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~ 135 (629)
..+-++..+-..|+...-..|.-+-.+|...-+-+++|...|..+....-.+.-. .-..+-|..+|+.++..--+.
T Consensus 37 ~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~~~~~~a~~~----~e~~k~r~~e~e~~~~~~~~~ 112 (522)
T PF05701_consen 37 EKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKAQAEEKQAEED----SELAKFRAKELEQGIAEEASV 112 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hHHhHHHHHHHhhhhcccchH
Confidence 3456778888899999999999999999999999999999999877655443222 113444666666655532222
Q ss_pred -hHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhhhh
Q 006828 136 -RENEIIALKSEVSGLMGNIENERERLSQACREKDLMKGE 174 (629)
Q Consensus 136 -Rk~Ei~~L~eela~l~~~~~~~ke~l~~L~~~~~~l~~~ 174 (629)
-+.++.....+.+.....+...+..|.++..+.......
T Consensus 113 ~~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~ 152 (522)
T PF05701_consen 113 AWKAELESAREQYASAVAELDSVKQELEKLRQELASALDA 152 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666666666666666544433
No 35
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.86 E-value=0.00035 Score=77.23 Aligned_cols=38 Identities=18% Similarity=0.364 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Q 006828 484 KKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESI 521 (629)
Q Consensus 484 ~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~l 521 (629)
.+|.+.+.-++.|++.+.....++..-|..|..++..+
T Consensus 420 ~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~ 457 (546)
T PF07888_consen 420 QELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKV 457 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666666666666666666666666666555444
No 36
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.82 E-value=0.00057 Score=84.96 Aligned_cols=143 Identities=14% Similarity=0.104 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 006828 137 ENEIIALKSEVSGLMGNIENERERLSQACREKDLMKGELDCQVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKE 216 (629)
Q Consensus 137 k~Ei~~L~eela~l~~~~~~~ke~l~~L~~~~~~l~~~l~~~~~~l~~l~~~l~ele~~~~~le~q~~~l~~e~~~L~~E 216 (629)
+.|++.+.+++.++... +.+... .+.....++.++.+.+.++..++..|+.++..+.. +..+..+
T Consensus 278 ~eERR~liEEAag~r~r---k~eA~k-----------kLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~k-yleL~ee 342 (1486)
T PRK04863 278 ANERRVHLEEALELRRE---LYTSRR-----------QLAAEQYRLVEMARELAELNEAESDLEQDYQAASD-HLNLVQT 342 (1486)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 56777888888665532 222222 23333446777778888888888888888877777 5555544
Q ss_pred HhhHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 006828 217 KNERDGDIEAFKKEKGLLGKRLVGLEKETDDLKLKIKVIVKEKNAIEMQNSEQKVINDELEKEVNKLNEIVLALQKEE 294 (629)
Q Consensus 217 ~~~l~~~i~~l~~~~~~l~~el~el~~ei~~l~~~ie~l~~el~ele~~~e~l~~el~ele~ela~l~e~l~~l~~~~ 294 (629)
.......+..+...+..+...+......+..+...+..+..++..++..+..++..+..+...+..++..+..+...+
T Consensus 343 ~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i 420 (1486)
T PRK04863 343 ALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAV 420 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344555555555555555555555555555555555555555555555555555555555555555555554444
No 37
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.81 E-value=0.00022 Score=80.87 Aligned_cols=318 Identities=15% Similarity=0.180 Sum_probs=155.9
Q ss_pred HHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q 006828 140 IIALKSEVSGLMGNIENERERLSQACREKDLMKGELDCQVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKNE 219 (629)
Q Consensus 140 i~~L~eela~l~~~~~~~ke~l~~L~~~~~~l~~~l~~~~~~l~~l~~~l~ele~~~~~le~q~~~l~~e~~~L~~E~~~ 219 (629)
++.|.+++..+......-+.++..|.+-.- .+..++.=-..+-.....+...+.....++..+..--+.+..+..+
T Consensus 233 vrdLtEkLetlR~kR~EDk~Kl~Elekmki----qleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad 308 (1243)
T KOG0971|consen 233 VRDLTEKLETLRLKRAEDKAKLKELEKMKI----QLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMAD 308 (1243)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555554444444444444433222 2333333333444455555555555555555555555566666666
Q ss_pred HHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 220 RDGDIEAFKKEKGLLGKRLVGLEKETDDLKLKIKVIVKEKNAIEMQNSEQKVINDELEKEVNKLNEIVLALQKEEKVLCG 299 (629)
Q Consensus 220 l~~~i~~l~~~~~~l~~el~el~~ei~~l~~~ie~l~~el~ele~~~e~l~~el~ele~ela~l~e~l~~l~~~~~~l~~ 299 (629)
+.+.++.+--.++-.++....|+.++..++..++++..+++-++.+.+..-..-. +.-.=++..+......+++
T Consensus 309 ~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~------~~ss~qfkqlEqqN~rLKd 382 (1243)
T KOG0971|consen 309 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQ------AASSYQFKQLEQQNARLKD 382 (1243)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc------ccchHHHHHHHHHHHHHHH
Confidence 6666666655555555566666666666666666666555555544433211110 0001112222222233333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhhHHHH
Q 006828 300 KILELENSCSEAMDEKLEMVLEIKALLDQEREKQKRIERLIEEKDEISHRLEKAVVVLDD---KEGEIAKLLREKNDIEE 376 (629)
Q Consensus 300 ~i~~le~~l~~~~~~~~~l~~ei~~l~~e~~e~~~~l~~l~~e~~~le~~i~el~~el~~---l~~~leel~~e~~~l~e 376 (629)
.+..+.+-..........+..++.....++.++....+.|..++...+..|.+++.+++. .+.-.+.+-.....+++
T Consensus 383 alVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEe 462 (1243)
T KOG0971|consen 383 ALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEE 462 (1243)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHH
Confidence 344444433333444444444444444554454445666666666666666666665554 34445555556666666
Q ss_pred HHHhhHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHH
Q 006828 377 RKVCQDNEISGLHKEIGELRDVVFKLK-ASCRDQQDKSKQLVNELADYKSALDQATLERDNAWKDLDEQRKSGMDLRLKL 455 (629)
Q Consensus 377 ~~~~~e~el~~l~~el~~l~~~l~~le-~~~~~le~ei~~l~~~l~~y~~~le~a~~~~~~~~~~l~~~k~~i~~Lk~eI 455 (629)
.+..++.++..+..- .++.+.+.... ...-.+..+++.+...+-.+...++.+.....++...+-..+..+..|...|
T Consensus 463 kVklLeetv~dlEal-ee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdql 541 (1243)
T KOG0971|consen 463 KVKLLEETVGDLEAL-EEMNEQLQESNRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQL 541 (1243)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 666666655554321 22222221111 1112344445544444434444444443333333445566666777777777
Q ss_pred HHhhhchHHhHHH
Q 006828 456 SEMEKRFEEKVEE 468 (629)
Q Consensus 456 ~~LG~vN~~AIeE 468 (629)
..+..-+..+.++
T Consensus 542 qe~~dq~~Sseee 554 (1243)
T KOG0971|consen 542 QELTDQQESSEEE 554 (1243)
T ss_pred HHHHhhhhhhHHH
Confidence 7776666554444
No 38
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.79 E-value=0.0018 Score=80.27 Aligned_cols=46 Identities=11% Similarity=0.271 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH-HHHHHHHhhccc
Q 006828 479 LVDLRKKMESHIGLLAEEKELMQKNLLEAKRNAD-DLRAKMESIGFN 524 (629)
Q Consensus 479 L~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~-~Lk~~I~~lg~v 524 (629)
......++..++..+..++.........-.+.+. .+..++.+-|..
T Consensus 723 ~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~le~~~~~eL~~~GvD 769 (1201)
T PF12128_consen 723 WQELEAELDEQIEQIKQEIAAAKQEAKEQLKELEQQYNQELAGKGVD 769 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3334455555556666666666655555444443 666666667764
No 39
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.79 E-value=1.2e-05 Score=81.53 Aligned_cols=54 Identities=26% Similarity=0.331 Sum_probs=21.6
Q ss_pred HHHHHHHHhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 361 EGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSK 414 (629)
Q Consensus 361 ~~~leel~~e~~~l~e~~~~~e~el~~l~~el~~l~~~l~~le~~~~~le~ei~ 414 (629)
+..+..+..............+..+..|...+..+...+......+..+..+++
T Consensus 175 e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld 228 (237)
T PF00261_consen 175 EEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELD 228 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333444444444444444444444444444433333333
No 40
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.75 E-value=0.00086 Score=74.22 Aligned_cols=21 Identities=10% Similarity=0.034 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 006828 301 ILELENSCSEAMDEKLEMVLE 321 (629)
Q Consensus 301 i~~le~~l~~~~~~~~~l~~e 321 (629)
+..++..+........-+..+
T Consensus 292 Lr~~qe~lqaSqq~~~~L~~E 312 (546)
T PF07888_consen 292 LRSAQEQLQASQQEAELLRKE 312 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 41
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.71 E-value=0.0013 Score=73.93 Aligned_cols=141 Identities=16% Similarity=0.163 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHhhhchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhcc
Q 006828 444 QRKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGF 523 (629)
Q Consensus 444 ~k~~i~~Lk~eI~~LG~vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~lg~ 523 (629)
+......++.++..+.-....+---.+-..+..+.|.++++++..-+.++++-+......+..+......+.
T Consensus 321 lh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerq-------- 392 (1265)
T KOG0976|consen 321 LHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQ-------- 392 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 344566777777777777777666666666777777777777776666666544433333322222222222
Q ss_pred chHHHHHHHHHHHHHHhhhhhh-HhhhhHhH-HHHhhhh-----hHHHHHHHHHHHHHHHcc-chhHhHHHHHHHHHHHh
Q 006828 524 NSDRALSMLKNTAAMVCQSEND-IDGQQELV-VDEKKLQ-----GETDQYAAEFQAIVNAFR-NREKLVEDMKHRVELMQ 595 (629)
Q Consensus 524 vaiee~~~~ker~~fl~~q~~D-~~ak~~l~-~i~~~~~-----~m~~~f~~~f~~i~~~F~-~~~~~~~~~~~~~~~~~ 595 (629)
+..+.+|.+.--+.+-+.| ..||+.|. ....+|. .|...-.+.|..++.+-. +|.++|++-..=+.+++
T Consensus 393 ---eQidelKn~if~~e~~~~dhe~~kneL~~a~ekld~mgthl~mad~Q~s~fk~Lke~aegsrrraIeQcnemv~rir 469 (1265)
T KOG0976|consen 393 ---EQIDELKNHIFRLEQGKKDHEAAKNELQEALEKLDLMGTHLSMADYQLSNFKVLKEHAEGSRRRAIEQCNEMVDRIR 469 (1265)
T ss_pred ---HHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHhhhhhHhhHHHHHHHHHHHHH
Confidence 2344445555555555666 66666666 5555543 233334455666655554 56666665544444443
No 42
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=98.57 E-value=0.0034 Score=71.58 Aligned_cols=84 Identities=18% Similarity=0.324 Sum_probs=68.7
Q ss_pred cHHHHHHHHHHHHHHHHHhhhchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 006828 440 DLDEQRKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKME 519 (629)
Q Consensus 440 ~l~~~k~~i~~Lk~eI~~LG~vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~ 519 (629)
.+..+......+...+..-..+.....+.+....++++....+..++...+.+|..+=...++.+..+...+..+++.|.
T Consensus 352 ~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~le 431 (560)
T PF06160_consen 352 QLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLE 431 (560)
T ss_pred HHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777777777777888888888888888888888888888888888877788888888888888888888
Q ss_pred hhcc
Q 006828 520 SIGF 523 (629)
Q Consensus 520 ~lg~ 523 (629)
..+=
T Consensus 432 k~nL 435 (560)
T PF06160_consen 432 KSNL 435 (560)
T ss_pred HcCC
Confidence 7764
No 43
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.57 E-value=0.0045 Score=72.64 Aligned_cols=245 Identities=20% Similarity=0.245 Sum_probs=111.2
Q ss_pred hhHHHHHhh-HhHhhhcch---hhhhhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 006828 112 GLFCVFLMT-QMKEMGEGL---DEEKNERENEIIALKSEVSGLMGNIENERERLSQACREKDLMKGELDCQVKEASRLKD 187 (629)
Q Consensus 112 ~~~~~~~~~-~~~~~~~~v---d~~~~~Rk~Ei~~L~eela~l~~~~~~~ke~l~~L~~~~~~l~~~l~~~~~~l~~l~~ 187 (629)
..+++|.|+ +...++.+. -..+..-...|..+.+.+..+.+.+...++.+..+..... +.+.+..+...+- =.
T Consensus 198 dkYklfmkaT~L~qi~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~-~~~~l~~Lk~k~~--W~ 274 (1074)
T KOG0250|consen 198 DKYKLFMKATQLEQITESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQLED-LKENLEQLKAKMA--WA 274 (1074)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH--HH
Confidence 567888875 333444433 3556666677777777777777777777777665554443 3233322222211 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH------------
Q 006828 188 RLIEMEGKERNLRSEILVLQSDYGRLKKEKNERDGDIEAFKKEKGLLGKRLVGLEKETDDLKLKIKVI------------ 255 (629)
Q Consensus 188 ~l~ele~~~~~le~q~~~l~~e~~~L~~E~~~l~~~i~~l~~~~~~l~~el~el~~ei~~l~~~ie~l------------ 255 (629)
.+.....++..+...+...+.....+...++.....+..+...+.+.+.++..+..+.+.-..+++..
T Consensus 275 ~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~ 354 (1074)
T KOG0250|consen 275 WVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVN 354 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555544444444444444444444433333333333333333
Q ss_pred --HHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 256 --VKEKNAIEMQNSEQKVINDELEKEVNKLNEIV-LALQKEEKVLCGKILELENSCSEAMDEKLEMVLEIKALLDQEREK 332 (629)
Q Consensus 256 --~~el~ele~~~e~l~~el~ele~ela~l~e~l-~~l~~~~~~l~~~i~~le~~l~~~~~~~~~l~~ei~~l~~e~~e~ 332 (629)
..++......+...+..+..++..++.++.+. ..+..++...++++..|..++..++.....+..++..+...+...
T Consensus 355 ~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~ 434 (1074)
T KOG0250|consen 355 DLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEE 434 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333333333333333344444443333 333333333333333444443333334444444444444433333
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 006828 333 QKRIERLIEEKDEISHRLEKAVVVLDD 359 (629)
Q Consensus 333 ~~~l~~l~~e~~~le~~i~el~~el~~ 359 (629)
+.+.......+..+...+......+.+
T Consensus 435 ~ee~~~i~~~i~~l~k~i~~~~~~l~~ 461 (1074)
T KOG0250|consen 435 EEEKEHIEGEILQLRKKIENISEELKD 461 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444433333333
No 44
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.56 E-value=0.0034 Score=70.68 Aligned_cols=78 Identities=9% Similarity=0.153 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 347 SHRLEKAVVVLDDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNELADYK 424 (629)
Q Consensus 347 e~~i~el~~el~~l~~~leel~~e~~~l~e~~~~~e~el~~l~~el~~l~~~l~~le~~~~~le~ei~~l~~~l~~y~ 424 (629)
+.++..+...+-+.+...+-+...+.+|+............+++........+..+-......+.+++.+.++++.|.
T Consensus 329 trqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e 406 (1265)
T KOG0976|consen 329 TRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLE 406 (1265)
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 333333333333333334444444555555555555555666666666666666666666667777777777776554
No 45
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.49 E-value=0.003 Score=66.66 Aligned_cols=32 Identities=19% Similarity=0.066 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 469 LAKTRNERETLVDLRKKMESHIGLLAEEKELM 500 (629)
Q Consensus 469 yeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l 500 (629)
+..++..+......+.+|..---+|..||...
T Consensus 271 l~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIatY 302 (312)
T PF00038_consen 271 LAELREEMARQLREYQELLDVKLALDAEIATY 302 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 33344444444444445555555555555443
No 46
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.47 E-value=0.006 Score=69.68 Aligned_cols=46 Identities=20% Similarity=0.264 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHH
Q 006828 356 VLDDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFK 401 (629)
Q Consensus 356 el~~l~~~leel~~e~~~l~e~~~~~e~el~~l~~el~~l~~~l~~ 401 (629)
+++-+..-+.++...+....+-+......|.+.+.-+..|.+.+..
T Consensus 498 Eld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe 543 (1243)
T KOG0971|consen 498 ELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQE 543 (1243)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444444444444444444444444433
No 47
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.46 E-value=0.0024 Score=70.76 Aligned_cols=44 Identities=27% Similarity=0.156 Sum_probs=32.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 006828 464 EKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEA 507 (629)
Q Consensus 464 ~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~ 507 (629)
.-..++.+++++...|..++++|..--.+|..||...++-+...
T Consensus 346 ~kd~~i~~mReec~~l~~Elq~LlD~ki~Ld~EI~~YRkLLege 389 (546)
T KOG0977|consen 346 DKDAEIAKMREECQQLSVELQKLLDTKISLDAEIAAYRKLLEGE 389 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhchHhHHHhHHHHHHHHhccc
Confidence 34567778888888888888888888888888877666555433
No 48
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.43 E-value=0.012 Score=71.09 Aligned_cols=27 Identities=37% Similarity=0.346 Sum_probs=18.8
Q ss_pred hhhHHHHHhhHhHhhhcchhhhhhhhH
Q 006828 111 KGLFCVFLMTQMKEMGEGLDEEKNERE 137 (629)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~vd~~~~~Rk 137 (629)
++-|.-|+.+.|.+...-+|+++.--.
T Consensus 142 QGe~~~fl~~~~~er~~il~~l~~l~~ 168 (908)
T COG0419 142 QGEFDAFLKSKPKERKEILDELFGLEK 168 (908)
T ss_pred cHhHHHHHhcCcHHHHHHHHHHhCchh
Confidence 566777777777777776776665555
No 49
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.42 E-value=0.0043 Score=65.44 Aligned_cols=109 Identities=16% Similarity=0.183 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 006828 137 ENEIIALKSEVSGLMGNIENERERLSQACREKDLMKGEL-DCQVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKK 215 (629)
Q Consensus 137 k~Ei~~L~eela~l~~~~~~~ke~l~~L~~~~~~l~~~l-~~~~~~l~~l~~~l~ele~~~~~le~q~~~l~~e~~~L~~ 215 (629)
+.++..|-+.++++...+..++..-..|...+..+.... .............+..++..+..+..+...+..++..+..
T Consensus 3 K~eL~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~ 82 (312)
T PF00038_consen 3 KEELQSLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKE 82 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHH
Confidence 456777888888888877777777777777776665552 1112222233444444444444444444444444444444
Q ss_pred HHhhHHHhHHHHHHHHHHHHHHHHhHHHHH
Q 006828 216 EKNERDGDIEAFKKEKGLLGKRLVGLEKET 245 (629)
Q Consensus 216 E~~~l~~~i~~l~~~~~~l~~el~el~~ei 245 (629)
++..+...+.........++.++..+...+
T Consensus 83 e~~~~r~k~e~e~~~~~~le~el~~lrk~l 112 (312)
T PF00038_consen 83 ELEDLRRKYEEELAERKDLEEELESLRKDL 112 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 444443333333333333333333333333
No 50
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.40 E-value=0.018 Score=71.57 Aligned_cols=97 Identities=19% Similarity=0.241 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhHH
Q 006828 296 VLCGKILELENSCSEAMDEKLEMVLEIKALLDQEREKQKRIERLIEEKDEISHRLEKAVVVLDDKEGEIAKLLR-EKNDI 374 (629)
Q Consensus 296 ~l~~~i~~le~~l~~~~~~~~~l~~ei~~l~~e~~e~~~~l~~l~~e~~~le~~i~el~~el~~l~~~leel~~-e~~~l 374 (629)
.++.++..+...+..+......+...+......+..+...+.............+..+..+...++..+..... .+..+
T Consensus 604 ~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 683 (1201)
T PF12128_consen 604 ELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQI 683 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555554444444445555444444444444444444444444444444444444444433333222 22333
Q ss_pred HHHHHhhHhHHHHHHHHH
Q 006828 375 EERKVCQDNEISGLHKEI 392 (629)
Q Consensus 375 ~e~~~~~e~el~~l~~el 392 (629)
...+..++.++..+..++
T Consensus 684 ~~~l~~l~~~l~~~~~e~ 701 (1201)
T PF12128_consen 684 EEQLNELEEELKQLKQEL 701 (1201)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444333
No 51
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.38 E-value=0.0055 Score=71.56 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=23.1
Q ss_pred chhhhhhhhHHHHHHHHHHHHhHHHhH
Q 006828 128 GLDEEKNERENEIIALKSEVSGLMGNI 154 (629)
Q Consensus 128 ~vd~~~~~Rk~Ei~~L~eela~l~~~~ 154 (629)
.|..|-..-|.|+..|++++.+-..+.
T Consensus 133 dVE~IA~k~PkElt~LFEEISgSiElK 159 (1141)
T KOG0018|consen 133 DVEKIAGKNPKELTALFEEISGSIELK 159 (1141)
T ss_pred hHHHHhccCHHHHHHHHHHHhhhhhhh
Confidence 478999999999999999998876633
No 52
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.36 E-value=0.00036 Score=79.66 Aligned_cols=25 Identities=4% Similarity=-0.223 Sum_probs=15.6
Q ss_pred hhhhhhhhHHHHHHHHHHHHhHHHh
Q 006828 129 LDEEKNERENEIIALKSEVSGLMGN 153 (629)
Q Consensus 129 vd~~~~~Rk~Ei~~L~eela~l~~~ 153 (629)
|...+...+.++..+...+-++..+
T Consensus 141 f~~f~~~~~~er~~il~~l~~~~~~ 165 (562)
T PHA02562 141 YVPFMQLSAPARRKLVEDLLDISVL 165 (562)
T ss_pred hhhHhcCChHhHHHHHHHHhCCHHH
Confidence 4455556666667777777666543
No 53
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.32 E-value=0.016 Score=67.30 Aligned_cols=52 Identities=21% Similarity=0.125 Sum_probs=30.5
Q ss_pred HHHHhhhhhhHHHhhHhHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhHHHhhhhhccch
Q 006828 46 EQIKRLKSLNDLLVHRSHEQRQQVESLSQAKAALEAELSLFGVEKSELLAELSGESDQK 104 (629)
Q Consensus 46 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 104 (629)
.+-.-|+.-+++|=+=-.-=|++.+.=+. .|.+--.|+++|++||+..+-..
T Consensus 170 ~~~~hL~velAdle~kir~LrqElEEK~e-------nll~lr~eLddleae~~klrqe~ 221 (1195)
T KOG4643|consen 170 KKNLHLEVELADLEKKIRTLRQELEEKFE-------NLLRLRNELDDLEAEISKLRQEI 221 (1195)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777777765555555566555442 35555566677777766655443
No 54
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.31 E-value=0.0024 Score=72.95 Aligned_cols=24 Identities=4% Similarity=0.065 Sum_probs=16.4
Q ss_pred hhhHHHHHhhHhHhhhcchhhhhh
Q 006828 111 KGLFCVFLMTQMKEMGEGLDEEKN 134 (629)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~vd~~~~ 134 (629)
++-+.-|...+|...+.-|+++++
T Consensus 138 q~~f~~f~~~~~~er~~il~~l~~ 161 (562)
T PHA02562 138 TAGYVPFMQLSAPARRKLVEDLLD 161 (562)
T ss_pred cCchhhHhcCChHhHHHHHHHHhC
Confidence 455666777777777777776665
No 55
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.29 E-value=0.0048 Score=68.46 Aligned_cols=43 Identities=19% Similarity=0.227 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHh
Q 006828 181 EASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKNERDGD 223 (629)
Q Consensus 181 ~l~~l~~~l~ele~~~~~le~q~~~l~~e~~~L~~E~~~l~~~ 223 (629)
.-.+-+..+..|...+..+-..+..|..+...|..++..+...
T Consensus 36 sR~rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~ 78 (546)
T KOG0977|consen 36 SREREKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGV 78 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444566777777777666666666666666666655555333
No 56
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.26 E-value=0.029 Score=67.89 Aligned_cols=14 Identities=21% Similarity=0.506 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 006828 506 EAKRNADDLRAKME 519 (629)
Q Consensus 506 ~~~k~i~~Lk~~I~ 519 (629)
.+...+..+...+.
T Consensus 658 ~~~~~~~~~~~~~~ 671 (908)
T COG0419 658 ELEEKVEELEAEIR 671 (908)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 57
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=0.02 Score=65.32 Aligned_cols=164 Identities=12% Similarity=0.078 Sum_probs=108.8
Q ss_pred HHHHHHHHhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 006828 361 EGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNELADYKSALDQATLERDNAWKD 440 (629)
Q Consensus 361 ~~~leel~~e~~~l~e~~~~~e~el~~l~~el~~l~~~l~~le~~~~~le~ei~~l~~~l~~y~~~le~a~~~~~~~~~~ 440 (629)
...++++......|..++...+..--.+-.+.......+..+..++..+...+.++......+...+..+......+...
T Consensus 460 gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~ 539 (698)
T KOG0978|consen 460 GSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSN 539 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 33344444444444444444444444444444444444444444444455555555444443333333332222222234
Q ss_pred HHHHHHHHHHHHHHHHHhhhchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 006828 441 LDEQRKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMES 520 (629)
Q Consensus 441 l~~~k~~i~~Lk~eI~~LG~vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~ 520 (629)
......++..+...|..++.--..+-..+..++...+...++..|+..++..+..+++.+......+..++..|+..+..
T Consensus 540 ~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~ 619 (698)
T KOG0978|consen 540 ESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLER 619 (698)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777778888888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred hccc
Q 006828 521 IGFN 524 (629)
Q Consensus 521 lg~v 524 (629)
+|..
T Consensus 620 ~k~~ 623 (698)
T KOG0978|consen 620 LKKE 623 (698)
T ss_pred hccc
Confidence 9886
No 58
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.20 E-value=0.05 Score=68.18 Aligned_cols=42 Identities=12% Similarity=0.330 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccc
Q 006828 483 RKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGFN 524 (629)
Q Consensus 483 ~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~lg~v 524 (629)
..+.+..++.+....+........++.+...|...|..+-.-
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~qL~~~i~~l~~~ 601 (1486)
T PRK04863 560 QEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAAR 601 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555555555555556666666666666655543
No 59
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=98.10 E-value=0.018 Score=59.14 Aligned_cols=52 Identities=23% Similarity=0.337 Sum_probs=19.6
Q ss_pred HHHHHHHHHhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 360 KEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQD 411 (629)
Q Consensus 360 l~~~leel~~e~~~l~e~~~~~e~el~~l~~el~~l~~~l~~le~~~~~le~ 411 (629)
....+.++......+......+-.++.++...+..+...+..++..+..+..
T Consensus 191 ~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k 242 (294)
T COG1340 191 YHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEK 242 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333333333333
No 60
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=98.01 E-value=0.059 Score=62.22 Aligned_cols=56 Identities=21% Similarity=0.180 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 006828 160 RLSQACREKDLMKGELDCQVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKK 215 (629)
Q Consensus 160 ~l~~L~~~~~~l~~~l~~~~~~l~~l~~~l~ele~~~~~le~q~~~l~~e~~~L~~ 215 (629)
++..+..++...+..++....+..++.....++......++.+...++.++.+++.
T Consensus 35 ~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~ 90 (717)
T PF09730_consen 35 RILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKF 90 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444555555555555555555555555555555555444444
No 61
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=98.01 E-value=2.5e-05 Score=91.65 Aligned_cols=57 Identities=19% Similarity=0.269 Sum_probs=0.0
Q ss_pred hhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 370 EKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNELADYKSA 426 (629)
Q Consensus 370 e~~~l~e~~~~~e~el~~l~~el~~l~~~l~~le~~~~~le~ei~~l~~~l~~y~~~ 426 (629)
....+......+...+..+...+..+...+.+++....-...+++.+...|..|+..
T Consensus 372 ~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~e 428 (722)
T PF05557_consen 372 EIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDKE 428 (722)
T ss_dssp ---------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 333333333334444444444444444444555555555555666666656555543
No 62
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.97 E-value=0.065 Score=61.40 Aligned_cols=263 Identities=15% Similarity=0.157 Sum_probs=123.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 336 IERLIEEKDEISHRLEKAVVVLDDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQ 415 (629)
Q Consensus 336 l~~l~~e~~~le~~i~el~~el~~l~~~leel~~e~~~l~e~~~~~e~el~~l~~el~~l~~~l~~le~~~~~le~ei~~ 415 (629)
...+.++...++..+..-......+...+.++......+.+.+.....++..+..+...+...+..+...+..+-.+...
T Consensus 176 Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~a~~q~l~~e~e~ 255 (617)
T PF15070_consen 176 FVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYVAAYQQLASEKEE 255 (617)
T ss_pred HHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555544444444555555666666666666666666666666666666666666665555555555555
Q ss_pred HHHHHHH----------HH----HHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHhhhch------------------H
Q 006828 416 LVNELAD----------YK----SALDQATLERDNAWKDLDEQRKSGMDLRLKLSEMEKRF------------------E 463 (629)
Q Consensus 416 l~~~l~~----------y~----~~le~a~~~~~~~~~~l~~~k~~i~~Lk~eI~~LG~vN------------------~ 463 (629)
+...+.. +. ..++....+.......+..+...-..|+..+..+-.-. +
T Consensus 256 L~~q~l~Qtql~d~lq~eE~q~~~~~E~~~~ELq~~qe~Lea~~qqNqqL~~qls~~~~~~eg~~~~~~~~~ee~~~~~~ 335 (617)
T PF15070_consen 256 LHKQLLQQTQLMDRLQHEESQGKVQLEMAHQELQEAQEHLEALSQQNQQLQAQLSLMALPGEGDGLESESEEEEAPQPMP 335 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCCCcccccccccccccCcCc
Confidence 5444321 00 01111111111111234444444445555554321111 1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh--cc------c------hH-HH
Q 006828 464 EKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESI--GF------N------SD-RA 528 (629)
Q Consensus 464 ~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~l--g~------v------ai-ee 528 (629)
...+.++.-..-..|+..-...+......|...+..-...-..+...+..+...-... +| | |. ..
T Consensus 336 ~ipEd~es~E~m~~f~~~a~~~~eeEr~~L~~qL~eqk~~~q~L~h~va~~q~e~e~~a~~~~~~~dsV~~E~h~aLq~a 415 (617)
T PF15070_consen 336 SIPEDLESREAMVEFFNSALAQAEEERARLRRQLEEQKVQCQHLAHQVASAQKEPEAEAPAPGTGGDSVPGETHQALQEA 415 (617)
T ss_pred ccccccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccCcccCCCCCCccchHHHHHH
Confidence 1112233333344566555555555555555444333222223333333333322221 11 2 22 25
Q ss_pred HHHHHHHHHHHhhhhhh-HhhhhHhH-HHHhh--hhhHHHHHHHHH----HHHHHHccchhHhH-------HHHHHHHHH
Q 006828 529 LSMLKNTAAMVCQSEND-IDGQQELV-VDEKK--LQGETDQYAAEF----QAIVNAFRNREKLV-------EDMKHRVEL 593 (629)
Q Consensus 529 ~~~~ker~~fl~~q~~D-~~ak~~l~-~i~~~--~~~m~~~f~~~f----~~i~~~F~~~~~~~-------~~~~~~~~~ 593 (629)
.+.+..||-=+-....| .+-++.|+ .+-.+ ..+.+..|..-| ..++..+..|+..| +.||-.+--
T Consensus 416 mekLq~~f~~~~~e~adl~e~~e~le~~~~ql~~et~ti~eyi~ly~~qr~~~k~r~~e~~~~i~~l~~~~e~mk~kl~e 495 (617)
T PF15070_consen 416 MEKLQSRFMDLMEEKADLKERVEKLEHRFIQLSGETDTIGEYITLYQSQRAVLKQRHQEKEEYISRLAQDREEMKVKLLE 495 (617)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccCccchhhhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666776555566666 66777777 43333 222333333222 23444444666555 456666666
Q ss_pred HhhhH
Q 006828 594 MQNSV 598 (629)
Q Consensus 594 ~~~~~ 598 (629)
|+.-|
T Consensus 496 lq~lv 500 (617)
T PF15070_consen 496 LQELV 500 (617)
T ss_pred HHHHH
Confidence 66555
No 63
>PRK11637 AmiB activator; Provisional
Probab=97.95 E-value=0.011 Score=65.21 Aligned_cols=65 Identities=9% Similarity=0.154 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 347 SHRLEKAVVVLDDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQD 411 (629)
Q Consensus 347 e~~i~el~~el~~l~~~leel~~e~~~l~e~~~~~e~el~~l~~el~~l~~~l~~le~~~~~le~ 411 (629)
......+...+..+...+.++..++..|..........+..|...+......+..+.....++..
T Consensus 183 ~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~ 247 (428)
T PRK11637 183 AAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRD 247 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444444444444444444444444444444444444333333333
No 64
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.93 E-value=0.065 Score=59.90 Aligned_cols=40 Identities=20% Similarity=0.135 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhhhhhHH
Q 006828 138 NEIIALKSEVSGLMGNIENERERLSQACREKDLMKGELDC 177 (629)
Q Consensus 138 ~Ei~~L~eela~l~~~~~~~ke~l~~L~~~~~~l~~~l~~ 177 (629)
.+++.+..++.-+...++.-+.++........-+.+.+..
T Consensus 346 ~eLdK~~~~i~~Ln~~leaReaqll~~e~~ka~lee~~~n 385 (961)
T KOG4673|consen 346 LELDKTKKEIKMLNNALEAREAQLLADEIAKAMLEEEQLN 385 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566777777777777776666666666655555444433
No 65
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.92 E-value=0.11 Score=62.03 Aligned_cols=18 Identities=22% Similarity=0.097 Sum_probs=9.8
Q ss_pred CChhhhcccccccccchh
Q 006828 17 NPQEQKNNQNLTQGKTVA 34 (629)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~ 34 (629)
.|.+-..|+=|-.|-|..
T Consensus 386 ~~~~f~Gn~LPFIGfTy~ 403 (1317)
T KOG0612|consen 386 IPKAFSGNHLPFIGFTYT 403 (1317)
T ss_pred CCCCCcCCcCCeeeeeec
Confidence 334444556666666655
No 66
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.89 E-value=0.0076 Score=69.84 Aligned_cols=109 Identities=25% Similarity=0.210 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--HHHHHH----
Q 006828 356 VLDDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNELA-D--YKSALD---- 428 (629)
Q Consensus 356 el~~l~~~leel~~e~~~l~e~~~~~e~el~~l~~el~~l~~~l~~le~~~~~le~ei~~l~~~l~-~--y~~~le---- 428 (629)
...+++.++..+..+....++.+..++.++..++....+-..+..-|-..+.-++++..++...|. + +++++=
T Consensus 546 r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg 625 (697)
T PF09726_consen 546 RRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALG 625 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 334444455555555555555555555555444443111222334444444455555555555554 2 222222
Q ss_pred HHHHhhhhccccHHHHHHHHHHHHHHHHHhhhchHH
Q 006828 429 QATLERDNAWKDLDEQRKSGMDLRLKLSEMEKRFEE 464 (629)
Q Consensus 429 ~a~~~~~~~~~~l~~~k~~i~~Lk~eI~~LG~vN~~ 464 (629)
++...++.....+..-..+|..|+..|.++..|-|+
T Consensus 626 ~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~av~p~ 661 (697)
T PF09726_consen 626 DAKRQLEIAQGQLRKKDKEIEELKAKIAQLLAVMPS 661 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 222233332344555678889999999999888765
No 67
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.88 E-value=0.02 Score=65.02 Aligned_cols=31 Identities=23% Similarity=0.321 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhchHHhHHHHHH
Q 006828 441 LDEQRKSGMDLRLKLSEMEKRFEEKVEELAK 471 (629)
Q Consensus 441 l~~~k~~i~~Lk~eI~~LG~vN~~AIeEyee 471 (629)
+......+..|+..+..||.-...-+++...
T Consensus 920 ~~~~~~~i~alk~~l~dL~q~~eeie~e~~s 950 (970)
T KOG0946|consen 920 LADQKEKIQALKEALEDLNQPVEEIEDEKVS 950 (970)
T ss_pred HhhHHHHHHHHHHHHHHhCCChhhHHhhhhc
Confidence 4455666777777777777665554444443
No 68
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=97.83 E-value=0.098 Score=58.75 Aligned_cols=157 Identities=13% Similarity=0.138 Sum_probs=92.8
Q ss_pred cHHHHHHHHHHHHHHHHHhhhchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhHHHHHHHHH
Q 006828 440 DLDEQRKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGL-------LAEEKELMQKNLLEAKRNAD 512 (629)
Q Consensus 440 ~l~~~k~~i~~Lk~eI~~LG~vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~~-------L~~e~~~l~~~l~~~~k~i~ 512 (629)
++...++....+-.+|..|+..|...-.+++.+++. +..+.+++...+.. ..-++....+.+..+...+.
T Consensus 521 di~~~k~qee~~~kqie~Lee~~~~Lrneles~~ee---l~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~ 597 (786)
T PF05483_consen 521 DINNSKKQEEKMLKQIENLEETNTQLRNELESVKEE---LKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILENKCN 597 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHH
Confidence 455566666777777888888887776666655443 33344444444433 33333333444444444455
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHhhhhhh-HhhhhHhH-HHHhhhh---hHHHHHHHHHHHHHHHccchhHhHHHH
Q 006828 513 DLRAKMESIGFNSDRALSMLKNTAAMVCQSEND-IDGQQELV-VDEKKLQ---GETDQYAAEFQAIVNAFRNREKLVEDM 587 (629)
Q Consensus 513 ~Lk~~I~~lg~vaiee~~~~ker~~fl~~q~~D-~~ak~~l~-~i~~~~~---~m~~~f~~~f~~i~~~F~~~~~~~~~~ 587 (629)
.|+..|+.-.. .|++ +...-..|..+..- ..--..+. -|..+.. .+..+|.+.-+.+.....++....+.+
T Consensus 598 ~LrKqvEnk~K-~iee---LqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~keie~K~~~e~~L 673 (786)
T PF05483_consen 598 NLRKQVENKNK-NIEE---LQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEEETDKYQKEIESKSISEEEL 673 (786)
T ss_pred HHHHHHHHHHh-HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHH
Confidence 55554442211 4444 33344445555443 22223333 4555443 445677777777777777999999999
Q ss_pred HHHHHHHhhhH-Hhhcc
Q 006828 588 KHRVELMQNSV-EAQKK 603 (629)
Q Consensus 588 ~~~~~~~~~~~-~~~~~ 603 (629)
-.+|+.++..+ ||-|-
T Consensus 674 ~~EveK~k~~a~EAvK~ 690 (786)
T PF05483_consen 674 LGEVEKAKLTADEAVKL 690 (786)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999 99883
No 69
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.80 E-value=0.12 Score=59.04 Aligned_cols=65 Identities=18% Similarity=0.005 Sum_probs=36.5
Q ss_pred hhhhhhHHHhhhhhccchhhhhhhh---hhHHHHHhhHhHhhhcchhhhhhhhHHHHHHHHHHHHhHH
Q 006828 87 GVEKSELLAELSGESDQKVSLEIEK---GLFCVFLMTQMKEMGEGLDEEKNERENEIIALKSEVSGLM 151 (629)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~vd~~~~~Rk~Ei~~L~eela~l~ 151 (629)
-++++.|..+...+.+-.+.-++-+ --..+=++.++...+-.||+|.+.+=.+|..+..++.+..
T Consensus 24 ~k~i~~Le~~k~~l~~~pv~~el~kvk~l~l~Gqt~~~fe~w~~~w~~i~~~~~~~ie~~L~~ae~~~ 91 (560)
T PF06160_consen 24 YKEIDELEERKNELMNLPVADELSKVKKLNLTGQTEEKFEEWRQKWDEIVTKQLPEIEEQLFEAEEYA 91 (560)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3455555555555555555555552 1122334445566666777777777777777666555443
No 70
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.80 E-value=0.037 Score=63.01 Aligned_cols=40 Identities=18% Similarity=0.219 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhcc
Q 006828 484 KKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGF 523 (629)
Q Consensus 484 ~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~lg~ 523 (629)
+.|.-.+.+..+|.+.+.-.+......+..|+..++.||.
T Consensus 900 ~nl~lki~s~kqeqee~~v~~~~~~~~i~alk~~l~dL~q 939 (970)
T KOG0946|consen 900 ENLSLKIVSNKQEQEELLVLLADQKEKIQALKEALEDLNQ 939 (970)
T ss_pred ccchhcccchhhhHHHHHHHHhhHHHHHHHHHHHHHHhCC
Confidence 4455566677777777777777778888899999999986
No 71
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.76 E-value=0.00028 Score=82.98 Aligned_cols=35 Identities=26% Similarity=0.269 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 465 KVEELAKTRNERETLVDLRKKMESHIGLLAEEKEL 499 (629)
Q Consensus 465 AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~ 499 (629)
.-+++..++.++..|.....-|..++..|+.++..
T Consensus 501 ~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~ 535 (722)
T PF05557_consen 501 LSEELNELQKEIEELERENERLRQELEELESELEK 535 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666666655553
No 72
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=97.74 E-value=0.045 Score=52.44 Aligned_cols=45 Identities=13% Similarity=0.201 Sum_probs=35.6
Q ss_pred cccHHHHHHHHHHHHHHHHHhhhchHHhHHHHHHHHHHHHHHHHH
Q 006828 438 WKDLDEQRKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVDL 482 (629)
Q Consensus 438 ~~~l~~~k~~i~~Lk~eI~~LG~vN~~AIeEyeevkeRyefL~~Q 482 (629)
...-+...+.+..|...++.|.+.++..-.+|..+...++.....
T Consensus 157 E~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~~~~~ 201 (205)
T KOG1003|consen 157 ETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDETLQE 201 (205)
T ss_pred hhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 344566778999999999999999999999988887777665443
No 73
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.71 E-value=0.16 Score=57.75 Aligned_cols=96 Identities=21% Similarity=0.256 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 254 VIVKEKNAIEMQNSEQKVINDELEKEVNKLNEIVLALQKEEKVLCGKILELENSCSEAMDEKLEMVLEIKALLDQEREKQ 333 (629)
Q Consensus 254 ~l~~el~ele~~~e~l~~el~ele~ela~l~e~l~~l~~~~~~l~~~i~~le~~l~~~~~~~~~l~~ei~~l~~e~~e~~ 333 (629)
++..+...-++.+-.++.....++.++..|+..+..|...+.+++..+......+............+++.+..++.+..
T Consensus 420 em~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q 499 (1118)
T KOG1029|consen 420 EMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQ 499 (1118)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444455666677777777777777777776666666666666666666666666666666666655555
Q ss_pred HHHHHHHHhHHHHHHH
Q 006828 334 KRIERLIEEKDEISHR 349 (629)
Q Consensus 334 ~~l~~l~~e~~~le~~ 349 (629)
.-+..+.-+...+...
T Consensus 500 ~kl~~l~~Ekq~l~~q 515 (1118)
T KOG1029|consen 500 EKLQKLAPEKQELNHQ 515 (1118)
T ss_pred HHHHhhhhHHHHHHHH
Confidence 5555554444444333
No 74
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.71 E-value=0.052 Score=63.10 Aligned_cols=32 Identities=22% Similarity=0.457 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 006828 186 KDRLIEMEGKERNLRSEILVLQSDYGRLKKEK 217 (629)
Q Consensus 186 ~~~l~ele~~~~~le~q~~~l~~e~~~L~~E~ 217 (629)
+..+..+......+..++..++.+.+.|+..+
T Consensus 445 Rsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl 476 (697)
T PF09726_consen 445 RSQISSLTNNERSLKSELSQLRQENEQLQNKL 476 (697)
T ss_pred HHHHhhccccchHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333444444333333333
No 75
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.70 E-value=0.015 Score=58.27 Aligned_cols=67 Identities=24% Similarity=0.243 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 242 EKETDDLKLKIKVIVKEKNAIEMQNSEQKVINDELEKEVNKLNEIVLALQKEEKVLCGKILELENSC 308 (629)
Q Consensus 242 ~~ei~~l~~~ie~l~~el~ele~~~e~l~~el~ele~ela~l~e~l~~l~~~~~~l~~~i~~le~~l 308 (629)
..+++.+.-.+......+..+...++.+...+..++..+..+..++..+...+..++.++...+..+
T Consensus 16 D~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 16 DLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333344444444444444444444444444444333333344443333
No 76
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.68 E-value=0.23 Score=58.66 Aligned_cols=63 Identities=22% Similarity=0.333 Sum_probs=36.3
Q ss_pred CCCCCcHHHHHhhhhhh----------HHHhhHhHHHHHHhHHHHHHHHHHHHHHH-------hhhhhhhhHHHhhhhhc
Q 006828 39 NSMEDPSEQIKRLKSLN----------DLLVHRSHEQRQQVESLSQAKAALEAELS-------LFGVEKSELLAELSGES 101 (629)
Q Consensus 39 ~~~~~~~~~~~~l~~~~----------~~l~~~~~~~~~~~~~~~~~~~~~~~~l~-------~~~~~~~~l~~~~~~~~ 101 (629)
|+..+-++|++-.+.+= +-|.+.+..-|.||-.++--=..+|..|+ .++++.+.|.+++..+-
T Consensus 1201 s~f~~me~kl~~ir~il~~~svs~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~ 1280 (1758)
T KOG0994|consen 1201 SRFLDMEEKLEEIRAILSAPSVSAEDIAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLL 1280 (1758)
T ss_pred hHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHH
Confidence 34444555555554432 33556666667777766665556666655 45666666666665543
No 77
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.67 E-value=0.24 Score=58.60 Aligned_cols=30 Identities=17% Similarity=-0.059 Sum_probs=17.8
Q ss_pred HhhhcchhhhhhhhHHHHHHHHHHHHhHHH
Q 006828 123 KEMGEGLDEEKNERENEIIALKSEVSGLMG 152 (629)
Q Consensus 123 ~~~~~~vd~~~~~Rk~Ei~~L~eela~l~~ 152 (629)
..|-...|.-|.+...|...+..-+.+...
T Consensus 1414 ~~~A~~~~~~l~~~~ae~eq~~~~v~ea~~ 1443 (1758)
T KOG0994|consen 1414 LLMAGDADTQLRSKLAEAEQTLSMVREAKL 1443 (1758)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777776666666555544443
No 78
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.64 E-value=0.17 Score=56.14 Aligned_cols=87 Identities=16% Similarity=0.302 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHhHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHH
Q 006828 178 QVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKNERDGDIEAFKKEKGLL---GKRLVGLEKETDDLKLKIKV 254 (629)
Q Consensus 178 ~~~~l~~l~~~l~ele~~~~~le~q~~~l~~e~~~L~~E~~~l~~~i~~l~~~~~~l---~~el~el~~ei~~l~~~ie~ 254 (629)
++.+++-...-+..+..........+..+..++..-..+++.+......|...+..- -.++.....+.+.+...+..
T Consensus 271 L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~ 350 (581)
T KOG0995|consen 271 LQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNK 350 (581)
T ss_pred HHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333444444433333333333333333333333321 12333344444444444444
Q ss_pred HHHHHHHHHh
Q 006828 255 IVKEKNAIEM 264 (629)
Q Consensus 255 l~~el~ele~ 264 (629)
+..++..+.+
T Consensus 351 i~~~~d~l~k 360 (581)
T KOG0995|consen 351 IQSELDRLSK 360 (581)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 79
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.62 E-value=0.071 Score=51.26 Aligned_cols=82 Identities=20% Similarity=0.195 Sum_probs=31.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 336 IERLIEEKDEISHRLEKAVVVLDDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQ 415 (629)
Q Consensus 336 l~~l~~e~~~le~~i~el~~el~~l~~~leel~~e~~~l~e~~~~~e~el~~l~~el~~l~~~l~~le~~~~~le~ei~~ 415 (629)
+..+..+...+......+.....++-.....+....-.++.-+...++.+.+-...+..+...+..+..-...++.++.+
T Consensus 104 i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~ 183 (193)
T PF14662_consen 104 IETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIEEYRSITEELRLEKSR 183 (193)
T ss_pred HHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444343333333333333333333333333333333344444444444444443333333333333333333
Q ss_pred HH
Q 006828 416 LV 417 (629)
Q Consensus 416 l~ 417 (629)
+.
T Consensus 184 LE 185 (193)
T PF14662_consen 184 LE 185 (193)
T ss_pred HH
Confidence 33
No 80
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.62 E-value=1.3e-05 Score=94.00 Aligned_cols=41 Identities=15% Similarity=0.260 Sum_probs=0.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHccchhHhHHHHHHHHHHHh
Q 006828 554 VDEKKLQGETDQYAAEFQAIVNAFRNREKLVEDMKHRVELMQ 595 (629)
Q Consensus 554 ~i~~~~~~m~~~f~~~f~~i~~~F~~~~~~~~~~~~~~~~~~ 595 (629)
||..++..... ....|..++.....++..|+.|.++++..+
T Consensus 609 vi~~Ld~k~~~-~~~e~~~L~~ql~e~~~~i~~lE~~~e~~k 649 (713)
T PF05622_consen 609 VIKTLDPKQNP-SSPEIQALKKQLQEKDRRIESLEKELEKSK 649 (713)
T ss_dssp ------------------------------------------
T ss_pred HhhccChhccC-ChHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 66666665555 778888999999999999999999998877
No 81
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.61 E-value=0.28 Score=57.89 Aligned_cols=205 Identities=10% Similarity=0.153 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHhhhchH
Q 006828 384 EISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNELADYKSALDQATLERDNAWKDLDEQRKSGMDLRLKLSEMEKRFE 463 (629)
Q Consensus 384 el~~l~~el~~l~~~l~~le~~~~~le~ei~~l~~~l~~y~~~le~a~~~~~~~~~~l~~~k~~i~~Lk~eI~~LG~vN~ 463 (629)
.+..|......+..++..+.. .. .+..+....+..++..+......+......++....++..+...|..+||-..
T Consensus 653 ~~~~L~~~k~rl~eel~ei~~-~~---~e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~ 728 (1141)
T KOG0018|consen 653 EVDQLKEKKERLLEELKEIQK-RR---KEVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEIS 728 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHH
Confidence 344444444444444444433 11 14444444444444444433333333234556666666677777777777665
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccc-------
Q 006828 464 EKVEELAKTRNERETLVDLRKKMESHIG------------LLAEEKELMQKNLLEAKRNADDLRAKMESIGFN------- 524 (629)
Q Consensus 464 ~AIeEyeevkeRyefL~~Q~~DLe~~~~------------~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~lg~v------- 524 (629)
..-.++.....+...|..+.+.++.++= .++.. .+ -..-.++.-++..++..|+.-
T Consensus 729 ~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~ir~Yee~--~~---~~~~a~k~~ef~~q~~~l~~~l~fe~~~ 803 (1141)
T KOG0018|consen 729 EIKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVRIREYEER--EL---QQEFAKKRLEFENQKAKLENQLDFEKQK 803 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCeeeehHHHH--HH---HHHHHHHHHHHHHHHHHHhhhhhheecc
Confidence 4444444444444444444444433321 01100 00 111122223333344444331
Q ss_pred -hHHHHHHHHHHHHHHhhhhhh-HhhhhHhH-HHHhhhhhHHHHHHHHHHHHHHHccchhHhHHHHHHHHHHHhhhH
Q 006828 525 -SDRALSMLKNTAAMVCQSEND-IDGQQELV-VDEKKLQGETDQYAAEFQAIVNAFRNREKLVEDMKHRVELMQNSV 598 (629)
Q Consensus 525 -aiee~~~~ker~~fl~~q~~D-~~ak~~l~-~i~~~~~~m~~~f~~~f~~i~~~F~~~~~~~~~~~~~~~~~~~~~ 598 (629)
.-..|++...-.+=+....++ ......+. .|.++ ..|..+=.+.|+.+...|+.-.+.+.+|-.++-.|..-+
T Consensus 804 d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~-~~~e~k~k~~~~~~~~e~~e~~k~~~~~~~~~tkl~~~i 879 (1141)
T KOG0018|consen 804 DTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEI-EELEKKNKSKFEKKEDEINEVKKILRRLVKELTKLDKEI 879 (1141)
T ss_pred cHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 222333333333333333444 33444444 55555 555555477777777777777777777777666665443
No 82
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.60 E-value=0.22 Score=56.56 Aligned_cols=48 Identities=17% Similarity=0.174 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 359 DKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASC 406 (629)
Q Consensus 359 ~l~~~leel~~e~~~l~e~~~~~e~el~~l~~el~~l~~~l~~le~~~ 406 (629)
..+.....+.....+++.+....-.++.-+..++.+++..++.....+
T Consensus 539 ~ke~irq~ikdqldelskE~esk~~eidi~n~qlkelk~~~~~q~lak 586 (1118)
T KOG1029|consen 539 KKELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELKEDVNSQQLAK 586 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444455555555555555554444443
No 83
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.59 E-value=0.19 Score=55.62 Aligned_cols=20 Identities=15% Similarity=0.169 Sum_probs=13.7
Q ss_pred ccchhhhhhh-hhhHHHHHhh
Q 006828 101 SDQKVSLEIE-KGLFCVFLMT 120 (629)
Q Consensus 101 ~~~~~~~~~~-~~~~~~~~~~ 120 (629)
.++.+++.+. +|-.+-|+..
T Consensus 88 f~~~iS~k~l~~PS~KdF~~i 108 (581)
T KOG0995|consen 88 FSHPISIKLLMKPSVKDFIAI 108 (581)
T ss_pred CCCChhhhhcCCCccccHHHH
Confidence 4588888888 5666666554
No 84
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.50 E-value=0.28 Score=55.06 Aligned_cols=91 Identities=18% Similarity=0.120 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhcc----c-hHH-HHHHHHHHHHHHhhhhhh-Hh
Q 006828 475 ERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGF----N-SDR-ALSMLKNTAAMVCQSEND-ID 547 (629)
Q Consensus 475 RyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~lg~----v-aie-e~~~~ker~~fl~~q~~D-~~ 547 (629)
-|+.|..|+ +..+..|+-++..+...-..+..++-.|..+.+.|-. | .|+ +|+.+.-||+-+-+-|-. .+
T Consensus 856 h~eall~Qr---eGElthlq~e~~~le~~Rs~laeElvklT~e~e~l~ek~~~~p~~~~~ledL~qRy~a~LqmyGEk~E 932 (961)
T KOG4673|consen 856 HYEALLRQR---EGELTHLQTELASLESIRSSLAEELVKLTAECEKLREKADRVPGIKAELEDLRQRYAAALQMYGEKDE 932 (961)
T ss_pred HHHHHHHhh---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 444455552 3344444444444444444444444444444444433 2 444 899999999888887776 55
Q ss_pred hhhHhH-HHHhhhhhHHHHHHHHHHH
Q 006828 548 GQQELV-VDEKKLQGETDQYAAEFQA 572 (629)
Q Consensus 548 ak~~l~-~i~~~~~~m~~~f~~~f~~ 572 (629)
--+.|. -+-++ +..|....+.
T Consensus 933 e~EELrlDl~dl----K~mYk~QIde 954 (961)
T KOG4673|consen 933 ELEELRLDLVDL----KEMYKEQIDE 954 (961)
T ss_pred HHHHHHhhHHHH----HHHHHHHHHH
Confidence 555555 44433 3444444443
No 85
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.49 E-value=0.029 Score=56.32 Aligned_cols=23 Identities=13% Similarity=0.161 Sum_probs=16.4
Q ss_pred HhhhhhHHHHHHHHHHHHHHHcc
Q 006828 556 EKKLQGETDQYAAEFQAIVNAFR 578 (629)
Q Consensus 556 ~~~~~~m~~~f~~~f~~i~~~F~ 578 (629)
..+...|-..|...|+.|..+|.
T Consensus 166 ~~L~~~l~~ell~~yeri~~~~k 188 (239)
T COG1579 166 EELKEKLDPELLSEYERIRKNKK 188 (239)
T ss_pred HHHHHhcCHHHHHHHHHHHhcCC
Confidence 34555666778888888888884
No 86
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.45 E-value=2.9e-05 Score=90.95 Aligned_cols=8 Identities=0% Similarity=0.326 Sum_probs=0.0
Q ss_pred HHHhhhhh
Q 006828 537 AMVCQSEN 544 (629)
Q Consensus 537 ~fl~~q~~ 544 (629)
.||.+|+.
T Consensus 688 sfL~rqR~ 695 (713)
T PF05622_consen 688 SFLARQRQ 695 (713)
T ss_dssp --------
T ss_pred cHHHHhhc
Confidence 45555544
No 87
>PRK09039 hypothetical protein; Validated
Probab=97.38 E-value=0.031 Score=59.75 Aligned_cols=62 Identities=18% Similarity=0.200 Sum_probs=41.7
Q ss_pred HHHhhHhHhhhcchhhhhhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhhhhhHH
Q 006828 116 VFLMTQMKEMGEGLDEEKNERENEIIALKSEVSGLMGNIENERERLSQACREKDLMKGELDC 177 (629)
Q Consensus 116 ~~~~~~~~~~~~~vd~~~~~Rk~Ei~~L~eela~l~~~~~~~ke~l~~L~~~~~~l~~~l~~ 177 (629)
+|+=+=++..-.++...+++++.++..|..+++++..-+.--......+...+..+...+..
T Consensus 31 ~f~l~~f~~~q~fLs~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~ 92 (343)
T PRK09039 31 MFLLTVFVVAQFFLSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSA 92 (343)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34444555666788899999999999999999987766655555555555555444444443
No 88
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.35 E-value=0.47 Score=54.30 Aligned_cols=31 Identities=16% Similarity=0.265 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 006828 398 VVFKLKASCRDQQDKSKQLVNELA-DYKSALD 428 (629)
Q Consensus 398 ~l~~le~~~~~le~ei~~l~~~l~-~y~~~le 428 (629)
+|.+.-.....++.++..+..++. .|..+-+
T Consensus 506 eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dE 537 (594)
T PF05667_consen 506 EIEKILSDTRELQKEINSLTGKLDRTFTVTDE 537 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 333333344445555555555554 4444433
No 89
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=97.34 E-value=0.55 Score=54.84 Aligned_cols=96 Identities=16% Similarity=0.097 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhchHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 006828 441 LDEQRKSGMDLRLKLSEMEKRFEE--KVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKM 518 (629)
Q Consensus 441 l~~~k~~i~~Lk~eI~~LG~vN~~--AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I 518 (629)
+..+..++..+..+|..+..-... ..+.|..+.++++.+......+...+..+..++..+.+.+..+.+++..+....
T Consensus 393 ~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 472 (650)
T TIGR03185 393 KSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKTKQK 472 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666666666554433 246777777777777777777777777777777777777766666666555555
Q ss_pred Hhhccc--hHHHHHHHHHHH
Q 006828 519 ESIGFN--SDRALSMLKNTA 536 (629)
Q Consensus 519 ~~lg~v--aiee~~~~ker~ 536 (629)
...-.. .+.....+.+.+
T Consensus 473 ~~~~~~~~~~~~~~~~~~~l 492 (650)
T TIGR03185 473 INAFELERAITIADKAKKTL 492 (650)
T ss_pred HhhhhHHHHHHHHHHHHHHH
Confidence 444333 444444444444
No 90
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.28 E-value=0.58 Score=53.80 Aligned_cols=19 Identities=26% Similarity=0.543 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 006828 275 ELEKEVNKLNEIVLALQKE 293 (629)
Q Consensus 275 ele~ela~l~e~l~~l~~~ 293 (629)
+|...+.+++..+..+...
T Consensus 164 eLK~QL~Elq~~Fv~ltne 182 (617)
T PF15070_consen 164 ELKEQLAELQDAFVKLTNE 182 (617)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4444444444444444444
No 91
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.27 E-value=0.2 Score=48.30 Aligned_cols=124 Identities=15% Similarity=0.212 Sum_probs=69.7
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHhHHHHHHHHHHHHHHHHhHH
Q 006828 163 QACREKDLMKGELDCQVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKNERDGDIEAFKKEKGLLGKRLVGLE 242 (629)
Q Consensus 163 ~L~~~~~~l~~~l~~~~~~l~~l~~~l~ele~~~~~le~q~~~l~~e~~~L~~E~~~l~~~i~~l~~~~~~l~~el~el~ 242 (629)
+|..+...+...+.....--.++...+..+..++..+. .+-..+..+..++.+++.....+......+...-..++
T Consensus 19 ~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Q----qal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlE 94 (193)
T PF14662_consen 19 KLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQ----QALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLE 94 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444455555555555555553 33333555666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHH
Q 006828 243 KETDDLKLKIKVIVKEKNAIEMQNSEQKVINDELEKEVNKLNEIVLAL 290 (629)
Q Consensus 243 ~ei~~l~~~ie~l~~el~ele~~~e~l~~el~ele~ela~l~e~l~~l 290 (629)
.+...|-..|..++.+...+....+.++..+.+|-..-..+..++..+
T Consensus 95 kE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~ 142 (193)
T PF14662_consen 95 KEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEF 142 (193)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHH
Confidence 666666666666666666666666666666555555444444444333
No 92
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=97.24 E-value=0.23 Score=48.60 Aligned_cols=89 Identities=16% Similarity=0.154 Sum_probs=51.2
Q ss_pred hhhhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 131 EEKNERENEIIALKSEVSGLMGNIENERERLSQACREKDLMKGELDCQVKEASRLKDRLIEMEGKERNLRSEILVLQSDY 210 (629)
Q Consensus 131 ~~~~~Rk~Ei~~L~eela~l~~~~~~~ke~l~~L~~~~~~l~~~l~~~~~~l~~l~~~l~ele~~~~~le~q~~~l~~e~ 210 (629)
.++|.|-..|..|..++.++...+........-|..-.-.....+......-..+-..+......+..+...+......+
T Consensus 5 rvlSar~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~ 84 (194)
T PF15619_consen 5 RVLSARLHKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQE 84 (194)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999998887777766665544433333333333333333344444444444444444444444
Q ss_pred hHHHHHHhh
Q 006828 211 GRLKKEKNE 219 (629)
Q Consensus 211 ~~L~~E~~~ 219 (629)
..+...+..
T Consensus 85 r~~~~klk~ 93 (194)
T PF15619_consen 85 RELERKLKD 93 (194)
T ss_pred HHHHHHHHH
Confidence 433333333
No 93
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=97.19 E-value=0.63 Score=52.58 Aligned_cols=150 Identities=14% Similarity=0.176 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHHhhhchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Q 006828 442 DEQRKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESI 521 (629)
Q Consensus 442 ~~~k~~i~~Lk~eI~~LG~vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~l 521 (629)
..+.-....+..+...+-+..-..-+....-+..-+.+..|...|+..-..|+.+++++...+......+...-...+.-
T Consensus 495 nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen 574 (786)
T PF05483_consen 495 NKLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEEN 574 (786)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHh
Confidence 34444455555555555555555556666666667777777777777777777777777777766666554322222211
Q ss_pred cc-----c--hHHHHHHHHHHHHHHhhhhhh-HhhhhHhHHHHhhhhhHHHHHHHHHHHHHHHccchhHhHHHHHHHHHH
Q 006828 522 GF-----N--SDRALSMLKNTAAMVCQSEND-IDGQQELVVDEKKLQGETDQYAAEFQAIVNAFRNREKLVEDMKHRVEL 593 (629)
Q Consensus 522 g~-----v--aiee~~~~ker~~fl~~q~~D-~~ak~~l~~i~~~~~~m~~~f~~~f~~i~~~F~~~~~~~~~~~~~~~~ 593 (629)
+. + ....+..+.+-..+|..|..- ......|. .-.+..+..-...-..++.+ +..|..+.-+++.
T Consensus 575 ~r~~e~e~~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLq---qeNk~LKKk~~aE~kq~~~~----eikVn~L~~E~e~ 647 (786)
T PF05483_consen 575 ARSIECEILKKEKQMKILENKCNNLRKQVENKNKNIEELQ---QENKALKKKITAESKQSNVY----EIKVNKLQEELEN 647 (786)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 11 1 334556666777777777664 33333332 22233333444444444444 3344444444444
Q ss_pred HhhhH
Q 006828 594 MQNSV 598 (629)
Q Consensus 594 ~~~~~ 598 (629)
++.-.
T Consensus 648 ~kk~~ 652 (786)
T PF05483_consen 648 LKKKH 652 (786)
T ss_pred HHhHH
Confidence 44433
No 94
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=97.07 E-value=0.7 Score=50.95 Aligned_cols=78 Identities=21% Similarity=0.270 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHhhhchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Q 006828 444 QRKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESI 521 (629)
Q Consensus 444 ~k~~i~~Lk~eI~~LG~vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~l 521 (629)
..++++.+...+..+-..-...---|..+...++.+..+..++......+...+.+++++--.++..+..+++.|..+
T Consensus 352 ~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~ei 429 (570)
T COG4477 352 FEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEI 429 (570)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555444444444445577777777888888777777777777777777777666666666666665544
No 95
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=97.03 E-value=0.68 Score=50.04 Aligned_cols=95 Identities=14% Similarity=0.176 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHhHHHHHHHHHHHHH----------HHHhHHHH
Q 006828 175 LDCQVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKNERDGDIEAFKKEKGLLGK----------RLVGLEKE 244 (629)
Q Consensus 175 l~~~~~~l~~l~~~l~ele~~~~~le~q~~~l~~e~~~L~~E~~~l~~~i~~l~~~~~~l~~----------el~el~~e 244 (629)
+..+......+....+-...-...++......-..+..++.++...+++|..++.....+.. +......+
T Consensus 297 i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~E 376 (622)
T COG5185 297 IKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQE 376 (622)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 33333344444444443333333333333333333444444444444444444444444433 33344444
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHH
Q 006828 245 TDDLKLKIKVIVKEKNAIEMQNSEQ 269 (629)
Q Consensus 245 i~~l~~~ie~l~~el~ele~~~e~l 269 (629)
...|...++.+..+...+.+.....
T Consensus 377 re~L~reL~~i~~~~~~L~k~V~~~ 401 (622)
T COG5185 377 REKLTRELDKINIQSDKLTKSVKSR 401 (622)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHhH
Confidence 5555555555555554444444333
No 96
>PRK09039 hypothetical protein; Validated
Probab=96.97 E-value=0.22 Score=53.36 Aligned_cols=50 Identities=14% Similarity=0.102 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 160 RLSQACREKDLMKGELDCQVKEASRLKDRLIEMEGKERNLRSEILVLQSD 209 (629)
Q Consensus 160 ~l~~L~~~~~~l~~~l~~~~~~l~~l~~~l~ele~~~~~le~q~~~l~~e 209 (629)
.|..+...+..+..-+..-.....++...+..+..++..++.....+...
T Consensus 54 eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~ 103 (343)
T PRK09039 54 ALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQAL 103 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444455555555555555555444444444443
No 97
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=96.84 E-value=0.83 Score=48.14 Aligned_cols=50 Identities=16% Similarity=0.177 Sum_probs=28.9
Q ss_pred HHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 006828 140 IIALKSEVSGLMGNIENERERLSQACREKDLMKGELDCQVKEASRLKDRL 189 (629)
Q Consensus 140 i~~L~eela~l~~~~~~~ke~l~~L~~~~~~l~~~l~~~~~~l~~l~~~l 189 (629)
+..|.....++..........+..+......+....+.+..++.......
T Consensus 24 ~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k 73 (309)
T PF09728_consen 24 LEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAK 73 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666666655555555555555443333
No 98
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.77 E-value=1.5 Score=50.19 Aligned_cols=26 Identities=15% Similarity=0.219 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 395 LRDVVFKLKASCRDQQDKSKQLVNEL 420 (629)
Q Consensus 395 l~~~l~~le~~~~~le~ei~~l~~~l 420 (629)
+...+.+-+.++.++-.....++..+
T Consensus 496 Iv~NI~KQk~eI~KIl~DTr~lQkei 521 (594)
T PF05667_consen 496 IVKNIRKQKEEIEKILSDTRELQKEI 521 (594)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 99
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=96.76 E-value=1.7 Score=50.55 Aligned_cols=24 Identities=38% Similarity=0.445 Sum_probs=14.0
Q ss_pred hhhHHHHHHHHHHHHhHHHhHHHH
Q 006828 134 NERENEIIALKSEVSGLMGNIENE 157 (629)
Q Consensus 134 ~~Rk~Ei~~L~eela~l~~~~~~~ 157 (629)
..|+..+..+..+++++...+...
T Consensus 329 d~~~~~~~~~~~e~~~~~~~l~~~ 352 (980)
T KOG0980|consen 329 DPRELQIEQLSREVAQLKAQLENL 352 (980)
T ss_pred ChhhHHHHHHHHHHHHHhhhhhhH
Confidence 345556666666666666555433
No 100
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=96.73 E-value=1 Score=47.60 Aligned_cols=108 Identities=13% Similarity=0.160 Sum_probs=50.6
Q ss_pred HHHHhHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHhH
Q 006828 145 SEVSGLMGNIENERERLSQACREKDLMKGELDCQVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKNERDGDI 224 (629)
Q Consensus 145 eela~l~~~~~~~ke~l~~L~~~~~~l~~~l~~~~~~l~~l~~~l~ele~~~~~le~q~~~l~~e~~~L~~E~~~l~~~i 224 (629)
.++..+...+............+.+....++.....+-..+.........++-.......++..++..+..++..+....
T Consensus 81 ~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr 160 (499)
T COG4372 81 PQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQR 160 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333344444444444444444455555555555555555555555555555555555555554444
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 006828 225 EAFKKEKGLLGKRLVGLEKETDDLKLKI 252 (629)
Q Consensus 225 ~~l~~~~~~l~~el~el~~ei~~l~~~i 252 (629)
..+..+...+..+-..|..-...++...
T Consensus 161 ~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~ 188 (499)
T COG4372 161 RQLEAQAQSLQASQKQLQASATQLKSQV 188 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443333333333
No 101
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.70 E-value=0.88 Score=46.37 Aligned_cols=61 Identities=20% Similarity=0.257 Sum_probs=28.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHH
Q 006828 231 KGLLGKRLVGLEKETDDLKLKIKVIVKEKNAIEMQNSEQKVINDELEKEVNKLNEIVLALQ 291 (629)
Q Consensus 231 ~~~l~~el~el~~ei~~l~~~ie~l~~el~ele~~~e~l~~el~ele~ela~l~e~l~~l~ 291 (629)
+......+..+......++.+|+.+...+.++...+...+.++...+.++..++.+|..+.
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~ 93 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELK 93 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444555555555555555555555555554444444444444444444444333333
No 102
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=96.63 E-value=1.2 Score=47.02 Aligned_cols=60 Identities=13% Similarity=0.210 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHhhhchHH
Q 006828 405 SCRDQQDKSKQLVNELADYKSALDQATLERDNAWKDLDEQRKSGMDLRLKLSEMEKRFEE 464 (629)
Q Consensus 405 ~~~~le~ei~~l~~~l~~y~~~le~a~~~~~~~~~~l~~~k~~i~~Lk~eI~~LG~vN~~ 464 (629)
.+..+...-..+..+|+-|...|......+.....-+...+.++..+...|..|...|..
T Consensus 203 ~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~ 262 (309)
T PF09728_consen 203 QVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQT 262 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444555555555555443211111122344444444444444444444433
No 103
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=96.52 E-value=1.2 Score=45.77 Aligned_cols=17 Identities=18% Similarity=0.393 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006828 408 DQQDKSKQLVNELADYK 424 (629)
Q Consensus 408 ~le~ei~~l~~~l~~y~ 424 (629)
.+-.+..++..++..|+
T Consensus 282 eL~ne~n~LkEr~~qyE 298 (305)
T PF14915_consen 282 ELINECNHLKERLYQYE 298 (305)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555555554
No 104
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.49 E-value=2.3 Score=48.51 Aligned_cols=57 Identities=18% Similarity=0.163 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHhhhchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 442 DEQRKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKE 498 (629)
Q Consensus 442 ~~~k~~i~~Lk~eI~~LG~vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~ 498 (629)
+.++.-+..+..-..++...+...-.++...+.+.+.+..+..||..++.+....+.
T Consensus 436 eqlk~lV~~~~k~~~e~e~s~~~~~~~i~~~k~~~e~le~~~kdL~s~L~~~~q~l~ 492 (716)
T KOG4593|consen 436 EQLKGLVQKVDKHSLEMEASMEELYREITGQKKRLEKLEHELKDLQSQLSSREQSLL 492 (716)
T ss_pred HHHHHHHHHHHHhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444555666667777777888888888888888876665443
No 105
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=96.44 E-value=0.95 Score=43.63 Aligned_cols=32 Identities=13% Similarity=0.107 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhH
Q 006828 189 LIEMEGKERNLRSEILVLQSDYGRLKKEKNER 220 (629)
Q Consensus 189 l~ele~~~~~le~q~~~l~~e~~~L~~E~~~l 220 (629)
+..+...+..++.++.+...++..+...+...
T Consensus 6 va~lnrri~~leeele~aqErl~~a~~KL~Ea 37 (205)
T KOG1003|consen 6 VAALNRRIQLLEEELDRAQERLATALQKLEEA 37 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555444444333
No 106
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.43 E-value=2.4 Score=48.26 Aligned_cols=109 Identities=17% Similarity=0.148 Sum_probs=59.3
Q ss_pred cHHHHHhhhhhhHHHhhHhHHHHHHh----HHHHHHHHHHHHHH------------------HhhhhhhhhHHHhhhhhc
Q 006828 44 PSEQIKRLKSLNDLLVHRSHEQRQQV----ESLSQAKAALEAEL------------------SLFGVEKSELLAELSGES 101 (629)
Q Consensus 44 ~~~~~~~l~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~l------------------~~~~~~~~~l~~~~~~~~ 101 (629)
.+..+++.-++++.=.++..+|-+-- -.++.|=++.+..| ...+.|+..=-+++..++
T Consensus 81 ~el~~~k~~~i~~r~~~~~~dr~~~~~~~l~~~q~a~~~~e~~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr 160 (716)
T KOG4593|consen 81 AELELTKAQSILARNYEAEVDRKHKLLTRLRQLQEALKGQEEKLQEQLERNRNQCQANLKKELELLREKEDKLAELGTLR 160 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888876542 22222222222222 123444444455555555
Q ss_pred cchhhhhhhhhhHHHHHhhHhHhhhcchhhhhhhhHHHHHHHHHHHHhHHH
Q 006828 102 DQKVSLEIEKGLFCVFLMTQMKEMGEGLDEEKNERENEIIALKSEVSGLMG 152 (629)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~Rk~Ei~~L~eela~l~~ 152 (629)
...=+--...-|-+-.++-+....-..++.+.+.=++.+..+..+...+..
T Consensus 161 ~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~ 211 (716)
T KOG4593|consen 161 NKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQE 211 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555566666666666655555665554444444444444443333
No 107
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=96.41 E-value=3.8 Score=50.25 Aligned_cols=26 Identities=15% Similarity=0.149 Sum_probs=18.5
Q ss_pred HHHHhhhhhhHHHhhHhHHHHHHhHHHHH
Q 006828 46 EQIKRLKSLNDLLVHRSHEQRQQVESLSQ 74 (629)
Q Consensus 46 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~ 74 (629)
..-..+|++++.+++-. .+...+|..
T Consensus 104 ~~~~~~ktles~~~~~~---~g~k~tlS~ 129 (1294)
T KOG0962|consen 104 RTKMEFKTLESVIWAIN---DGDRVTLSG 129 (1294)
T ss_pred HHHHHHHHHhhhheeee---cCccccccc
Confidence 34567899999999988 555555544
No 108
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.31 E-value=1.5 Score=44.66 Aligned_cols=62 Identities=16% Similarity=0.318 Sum_probs=29.0
Q ss_pred hhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 006828 133 KNERENEIIALKSEVSGLMGNIENERERLSQACREKDLMKGELDCQVKEASRLKDRLIEMEG 194 (629)
Q Consensus 133 ~~~Rk~Ei~~L~eela~l~~~~~~~ke~l~~L~~~~~~l~~~l~~~~~~l~~l~~~l~ele~ 194 (629)
+.....++..+.....++...+..+-..+..+....+....+++....++..+...|..++.
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~ 94 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKE 94 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555444444444444444444444444444444444443333
No 109
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=96.11 E-value=2.4 Score=44.95 Aligned_cols=104 Identities=14% Similarity=0.222 Sum_probs=45.9
Q ss_pred HHHhHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHhHH
Q 006828 146 EVSGLMGNIENERERLSQACREKDLMKGELDCQVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKNERDGDIE 225 (629)
Q Consensus 146 ela~l~~~~~~~ke~l~~L~~~~~~l~~~l~~~~~~l~~l~~~l~ele~~~~~le~q~~~l~~e~~~L~~E~~~l~~~i~ 225 (629)
+++++...+..++..+.....++.....+....+.++.....+-..++.....+...+.+....+..+......+...+.
T Consensus 75 qlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~ 154 (499)
T COG4372 75 QLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLK 154 (499)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555544444444444444444444444444444444444443333333333333333333
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Q 006828 226 AFKKEKGLLGKRLVGLEKETDDLK 249 (629)
Q Consensus 226 ~l~~~~~~l~~el~el~~ei~~l~ 249 (629)
.+-.++..+..+...+.+.-..|+
T Consensus 155 ~l~~qr~ql~aq~qsl~a~~k~LQ 178 (499)
T COG4372 155 TLAEQRRQLEAQAQSLQASQKQLQ 178 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 110
>PF13514 AAA_27: AAA domain
Probab=95.92 E-value=6.9 Score=48.74 Aligned_cols=96 Identities=18% Similarity=0.198 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 006828 441 LDEQRKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMES 520 (629)
Q Consensus 441 l~~~k~~i~~Lk~eI~~LG~vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~ 520 (629)
...+...+..+...|...|.... +..+...++- ...+.|...+..+..+++.+...+..+...+..++..|..
T Consensus 856 ~~~l~~~~~~~~~~l~~~~~~~~-----~~~l~~e~~~--~d~~~l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~ 928 (1111)
T PF13514_consen 856 RRELREELEDLERQLERQADGLD-----LEELEEELEE--LDPDELEAELEELEEELEELEEELEELQEERAELEQELEA 928 (1111)
T ss_pred HHHHHHHHHHHHHHHHhhcCccc-----HHHHHHHhhc--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666655554432 1222222211 1234455555555555555666666666677777777777
Q ss_pred hccc-----hHHHHHHHHHHHHHHhhhh
Q 006828 521 IGFN-----SDRALSMLKNTAAMVCQSE 543 (629)
Q Consensus 521 lg~v-----aiee~~~~ker~~fl~~q~ 543 (629)
|+.. +..++..+..+..-+...+
T Consensus 929 l~~~~~~a~l~~e~e~~~a~l~~~~~~~ 956 (1111)
T PF13514_consen 929 LEGDDDAAELEQEREEAEAELEELAEEW 956 (1111)
T ss_pred HhCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 7664 3335555555544444333
No 111
>PRK15374 pathogenicity island 1 effector protein SipB; Provisional
Probab=95.80 E-value=4.1 Score=45.26 Aligned_cols=187 Identities=14% Similarity=0.101 Sum_probs=91.7
Q ss_pred HHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHhhhchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 006828 425 SALDQATLERDNAWKDLDEQRKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNL 504 (629)
Q Consensus 425 ~~le~a~~~~~~~~~~l~~~k~~i~~Lk~eI~~LG~vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l 504 (629)
..++.....++.....++.+...+..|..+.+.++|+-|. |.+.+..+.-....-..-...+... +...-+..
T Consensus 141 d~l~q~~~~~~~Aq~~l~~aq~~l~~lq~~a~~~~P~sp~----l~~a~~av~~a~~~a~~a~~~~~~~---v~a~~~a~ 213 (593)
T PRK15374 141 DLYEASIKKTDTAKSVYDAAEKKLTQAQNKLQSLDPADPG----YAQAEAAVEQAGKEATEAKEALDKA---TDATVKAG 213 (593)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCChh----HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHh
Confidence 3333333334444567889999999999999999999999 5555554444333322222222222 22221111
Q ss_pred HHHHHHHHHHHHHHHhhccc--hHHHHHHHHHHHHHHhhhhhh-HhhhhHhH-HHHhhhhhHHHHHHHHHHHHHHHcc--
Q 006828 505 LEAKRNADDLRAKMESIGFN--SDRALSMLKNTAAMVCQSEND-IDGQQELV-VDEKKLQGETDQYAAEFQAIVNAFR-- 578 (629)
Q Consensus 505 ~~~~k~i~~Lk~~I~~lg~v--aiee~~~~ker~~fl~~q~~D-~~ak~~l~-~i~~~~~~m~~~f~~~f~~i~~~F~-- 578 (629)
... ....+..|..|+|. ++- .-.-..+ ..+..+ +.+-..|. ++..+.+-|.+.=.+.|..-..-|.
T Consensus 214 ~~a---~~ka~~~i~slt~~Q~~~~----~~~~i~~-~~~~~~~l~~~a~LT~LmA~l~eLi~~~s~e~lk~~~el~~kl 285 (593)
T PRK15374 214 TDA---KAKAEKADNILTKFQGTAN----AASQNQV-SQGEQDNLSNVARLTMLMAMFIEIVGKNTEESLQNDLALFNAL 285 (593)
T ss_pred hhH---HHHHHHHHhhccHHhhhhh----hhhHHHH-HHhhhhhhhhHHHHHHHHHHHHHHHhhhhHhHHHhHHHHHHHH
Confidence 111 11444557888876 221 0011112 233344 66777777 7777666665544444443333333
Q ss_pred --ch-hHhHHHHHHHHHHHhhhHHhhcc--------cchhhhHhhHHHH-HHHHHHHHHh
Q 006828 579 --NR-EKLVEDMKHRVELMQNSVEAQKK--------KSFWTVVSSATTI-FAAASVAYIA 626 (629)
Q Consensus 579 --~~-~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~-~~~~~~~~~~ 626 (629)
.+ ..+-+.-+.--+..+++-|++|. +.+.|.||.+.++ ...||+|.||
T Consensus 286 sea~~kd~ekKA~Eyee~vrKAEE~qK~mgCvgKIlG~vitaVsvvAAvfTGGASLAlAa 345 (593)
T PRK15374 286 QEGRQAEMEKKSAEFQEETRKAEETNRIMGCIGKVLGALLTIVSVVAAVFTGGASLALAA 345 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 22 22222222223334444455552 4444555544432 2334666654
No 112
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.73 E-value=3.5 Score=43.85 Aligned_cols=100 Identities=18% Similarity=0.162 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 006828 441 LDEQRKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMES 520 (629)
Q Consensus 441 l~~~k~~i~~Lk~eI~~LG~vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~ 520 (629)
...+..++..|+....+++.+.. +++..++.++..+..+.......+..++.++..+...+..+..++..+..+|..
T Consensus 186 ~~~L~~e~~~Lk~~~~e~~~~D~---~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e 262 (325)
T PF08317_consen 186 KAELEEELENLKQLVEEIESCDQ---EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAE 262 (325)
T ss_pred HHHHHHHHHHHHHHHhhhhhcCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666665 455555555555555555555555555555555555555555555555555555
Q ss_pred hcc-------chHHHHHHHHHHHHHHhhhh
Q 006828 521 IGF-------NSDRALSMLKNTAAMVCQSE 543 (629)
Q Consensus 521 lg~-------vaiee~~~~ker~~fl~~q~ 543 (629)
+.. .+..+...++.+|++|+...
T Consensus 263 ~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~~~ 292 (325)
T PF08317_consen 263 AEKIREECRGWTRSEVKRLKAKVDALEKLT 292 (325)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 554 38889999999999998764
No 113
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=95.68 E-value=6 Score=46.18 Aligned_cols=90 Identities=19% Similarity=0.226 Sum_probs=60.7
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHhhccc-------hHHHHHHHHHHHHHHhhhhhhHhhhhHhHHHHhhhhhHH--H
Q 006828 494 AEEKELMQKNLLEAKRNADDLRAKMESIGFN-------SDRALSMLKNTAAMVCQSENDIDGQQELVVDEKKLQGET--D 564 (629)
Q Consensus 494 ~~e~~~l~~~l~~~~k~i~~Lk~~I~~lg~v-------aiee~~~~ker~~fl~~q~~D~~ak~~l~~i~~~~~~m~--~ 564 (629)
..+++.+...+-.++.-+.-.+.+|..|-+| |.=.+.-+|..|+==..-..+ +|.++..+.+ +
T Consensus 582 d~d~e~l~eqilKLKSLLSTKREQIaTLRTVLKANKqTAEvALanLKsKYE~EK~~v~e--------tm~kLRnELK~LK 653 (717)
T PF09730_consen 582 DKDKEELQEQILKLKSLLSTKREQIATLRTVLKANKQTAEVALANLKSKYENEKAMVSE--------TMMKLRNELKALK 653 (717)
T ss_pred cccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH--------HHHHHHHHHHHHH
Confidence 3456677777777888888888888888888 555788888888643333332 3444433322 1
Q ss_pred HHHHHHHHHHHHccch----hHhHHHHHHHH
Q 006828 565 QYAAEFQAIVNAFRNR----EKLVEDMKHRV 591 (629)
Q Consensus 565 ~f~~~f~~i~~~F~~~----~~~~~~~~~~~ 591 (629)
.=+.+|..++.-|..| -+-+|+|.+|+
T Consensus 654 EDAATFsSlRamFa~RCdEYvtQldemqrqL 684 (717)
T PF09730_consen 654 EDAATFSSLRAMFAARCDEYVTQLDEMQRQL 684 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2268999999999966 35677777765
No 114
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=95.64 E-value=6.2 Score=46.11 Aligned_cols=77 Identities=18% Similarity=0.176 Sum_probs=35.0
Q ss_pred HHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 006828 140 IIALKSEVSGLMGNIENERERLSQACREKDLMKGELDCQVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKN 218 (629)
Q Consensus 140 i~~L~eela~l~~~~~~~ke~l~~L~~~~~~l~~~l~~~~~~l~~l~~~l~ele~~~~~le~q~~~l~~e~~~L~~E~~ 218 (629)
+......+-|+.. +..+...+..+...... ......+...+..++..+..+......+..++..+..+++.+...+.
T Consensus 171 l~~Ai~~LlGl~~-~~~L~~dl~~~~~~~~~-~~~~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~ 247 (650)
T TIGR03185 171 LKEAIEVLLGLDL-IDRLAGDLTNVLRRRKK-SELPSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLE 247 (650)
T ss_pred HHHHHHHHhCcHH-HHHHHHHHHHHHHHHHh-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666 55666666555443321 11223333344444444444444444444444444443333333333
No 115
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=95.57 E-value=2.1 Score=48.26 Aligned_cols=55 Identities=11% Similarity=0.117 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhhhhh
Q 006828 489 HIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGFNSDRALSMLKNTAAMVCQSEN 544 (629)
Q Consensus 489 ~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~lg~vaiee~~~~ker~~fl~~q~~ 544 (629)
.+..++.++..+...+..+.+.+..++..+..++. ..-+|..+...++.....++
T Consensus 318 ~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~-~~~el~~L~Re~~~~~~~Y~ 372 (498)
T TIGR03007 318 ELAEAEAEIASLEARVAELTARIERLESLLRTIPE-VEAELTQLNRDYEVNKSNYE 372 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH-HHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444455555544443 22245555555544444444
No 116
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=95.29 E-value=4.2 Score=41.94 Aligned_cols=157 Identities=15% Similarity=0.184 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh
Q 006828 301 ILELENSCSEAMDEKLEMVLEIKALLDQEREKQKRIERLIEEKDEISHRLEKAVVVLDDKEGEIAKLLREKNDIEERKVC 380 (629)
Q Consensus 301 i~~le~~l~~~~~~~~~l~~ei~~l~~e~~e~~~~l~~l~~e~~~le~~i~el~~el~~l~~~leel~~e~~~l~e~~~~ 380 (629)
-..|..++..++.....+..++......+.+..--++.....+......+.++..-...-+..+..+......+++.+..
T Consensus 146 ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~Q 225 (305)
T PF14915_consen 146 NEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQ 225 (305)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555555554444444443333444444444434444444433333344444444444444444444
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHhhh
Q 006828 381 QDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNELADYKSALDQATLERDNAWKDLDEQRKSGMDLRLKLSEMEK 460 (629)
Q Consensus 381 ~e~el~~l~~el~~l~~~l~~le~~~~~le~ei~~l~~~l~~y~~~le~a~~~~~~~~~~l~~~k~~i~~Lk~eI~~LG~ 460 (629)
+..+--=|+.++......-...+.-+.+++..+..+...+. ..-..+.--|+.
T Consensus 226 lqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~---------------------------ae~ekq~lllEE 278 (305)
T PF14915_consen 226 LQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQ---------------------------AESEKQVLLLEE 278 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---------------------------HHHHHHHHHHHH
Confidence 44444444444444333322222222222222222111111 111222333566
Q ss_pred chHHhHHHHHHHHHHHHHHHHHHH
Q 006828 461 RFEEKVEELAKTRNERETLVDLRK 484 (629)
Q Consensus 461 vN~~AIeEyeevkeRyefL~~Q~~ 484 (629)
-|-..+.+|.-+++|.--+...+.
T Consensus 279 rNKeL~ne~n~LkEr~~qyEkEKa 302 (305)
T PF14915_consen 279 RNKELINECNHLKERLYQYEKEKA 302 (305)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhh
Confidence 777888888888888776665544
No 117
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=95.21 E-value=2.6 Score=50.07 Aligned_cols=58 Identities=12% Similarity=0.154 Sum_probs=33.7
Q ss_pred hhhhhhhhhhHHHHHhhHhHhhhcchhhhhhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHH
Q 006828 104 KVSLEIEKGLFCVFLMTQMKEMGEGLDEEKNERENEIIALKSEVSGLMGNIENERERLSQACREK 168 (629)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~Rk~Ei~~L~eela~l~~~~~~~ke~l~~L~~~~ 168 (629)
..++.|-+.+...|+..+...... .-..-+.-|..++..+...+...+.++...+...
T Consensus 167 ~~Aa~iaN~la~~Y~~~~~~~k~~-------~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~ 224 (754)
T TIGR01005 167 KLAAAIPDAIAAAYIAGQGAAKSE-------SNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQS 224 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345555568888886654443332 2223345566666666666666666666666543
No 118
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=95.14 E-value=6.8 Score=43.53 Aligned_cols=71 Identities=13% Similarity=-0.020 Sum_probs=41.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccc--hHHHHHHHHHHH
Q 006828 463 EEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGFN--SDRALSMLKNTA 536 (629)
Q Consensus 463 ~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~lg~v--aiee~~~~ker~ 536 (629)
||..+.|-. .+.....+..||..+++.....+..+...+..+...+..+...-..+-.. -++..-.-.+||
T Consensus 439 PGlPe~~l~---l~~~~~~~i~~l~~eLse~pinm~~v~~~v~~a~~~m~~l~~~t~e~ve~a~LaE~lIQY~NRY 511 (570)
T COG4477 439 PGLPETFLS---LFFTAGHEIQDLMKELSEVPINMEAVSALVDIATEDMNTLEDETEEVVENAVLAEQLIQYGNRY 511 (570)
T ss_pred CCCcHHHHH---HHHhhhhHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666653 35556667777777777777766666666666666665555554444332 333344444555
No 119
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=95.00 E-value=8.1 Score=43.68 Aligned_cols=50 Identities=10% Similarity=0.048 Sum_probs=24.2
Q ss_pred HHHHHHHHHhhhchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 449 MDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKE 498 (629)
Q Consensus 449 ~~Lk~eI~~LG~vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~ 498 (629)
+.|..+...|..-|.+.-.+..+...+-+++..+-.....-+..|...+.
T Consensus 386 r~lq~e~a~Lr~~n~~~~~~~~~~~~~~~el~~~~~~~ke~i~klE~dl~ 435 (629)
T KOG0963|consen 386 RKLQNENASLRVANSGLSGRITELSKKGEELEAKATEQKELIAKLEQDLL 435 (629)
T ss_pred hhhhHHHHHHhccccccchhHHHHHhhhhhhHHHHHHHHHHHHHHHhhHh
Confidence 34444455555555555555555555555555444444444444444433
No 120
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=94.90 E-value=4.6 Score=45.48 Aligned_cols=52 Identities=12% Similarity=0.220 Sum_probs=26.8
Q ss_pred hhhhhHHHHHhhHhHhhhcchhhhhhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHH
Q 006828 109 IEKGLFCVFLMTQMKEMGEGLDEEKNERENEIIALKSEVSGLMGNIENERERLSQACRE 167 (629)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~vd~~~~~Rk~Ei~~L~eela~l~~~~~~~ke~l~~L~~~ 167 (629)
+-+.|...|+.......+... ..-+.-|..++..+...+...+..+.....+
T Consensus 139 i~n~l~~~yi~~~~~~~~~~~-------~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~ 190 (498)
T TIGR03007 139 VVQTLLTIFVEETLGSKRQDS-------DSAQRFIDEQIKTYEKKLEAAENRLKAFKQE 190 (498)
T ss_pred HHHHHHHHHHHhhcccchhhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334666667555432222211 1234455556666666666666666665543
No 121
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=94.86 E-value=6.1 Score=41.56 Aligned_cols=38 Identities=29% Similarity=0.324 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 392 IGELRDVVFKLKASCRDQQDKSKQLVNELADYKSALDQ 429 (629)
Q Consensus 392 l~~l~~~l~~le~~~~~le~ei~~l~~~l~~y~~~le~ 429 (629)
++.+--+..-+...+..++.+..-+...+..|...++.
T Consensus 191 IDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le~ 228 (319)
T PF09789_consen 191 IDALIMENRYLKERLKQLQEEKELLKQTINKYKSALER 228 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444445555555666666666666667766653
No 122
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=94.79 E-value=4.7 Score=39.88 Aligned_cols=39 Identities=23% Similarity=0.211 Sum_probs=16.0
Q ss_pred hhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 266 NSEQKVINDELEKEVNKLNEIVLALQKEEKVLCGKILEL 304 (629)
Q Consensus 266 ~e~l~~el~ele~ela~l~e~l~~l~~~~~~l~~~i~~l 304 (629)
+..+...+..+...+..+...+..+...-..+..-+..+
T Consensus 85 L~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey 123 (207)
T PF05010_consen 85 LNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEY 123 (207)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 333333344444444444444444444433333333333
No 123
>PRK11281 hypothetical protein; Provisional
Probab=94.66 E-value=15 Score=45.28 Aligned_cols=55 Identities=11% Similarity=0.133 Sum_probs=27.4
Q ss_pred HHHHHHHhHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 006828 142 ALKSEVSGLMGNIENERERLSQACREKDLMKGELDCQVKEASRLKDRLIEMEGKE 196 (629)
Q Consensus 142 ~L~eela~l~~~~~~~ke~l~~L~~~~~~l~~~l~~~~~~l~~l~~~l~ele~~~ 196 (629)
.|...+..+...+...+..+..........+..-+..+..+......+.++..++
T Consensus 125 qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L 179 (1113)
T PRK11281 125 QLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLL 179 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555444444444445555555555554433
No 124
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=94.64 E-value=12 Score=44.10 Aligned_cols=270 Identities=14% Similarity=0.085 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 006828 133 KNERENEIIALKSEVSGLMGNIENERERLSQACREKDLMKGELDCQVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGR 212 (629)
Q Consensus 133 ~~~Rk~Ei~~L~eela~l~~~~~~~ke~l~~L~~~~~~l~~~l~~~~~~l~~l~~~l~ele~~~~~le~q~~~l~~e~~~ 212 (629)
+............++.++...+..+...|.++-.....+......+...+..+...+..+-.....+.. +......
T Consensus 490 L~e~~~s~~~~s~eL~~avskIsEfv~~LekeVh~C~DLLsgkadLE~fieE~s~tLdwIls~~~SLqD----v~s~~sE 565 (769)
T PF05911_consen 490 LVEESKSMIEISQELNVAVSKISEFVLVLEKEVHVCQDLLSGKADLERFIEEFSLTLDWILSNCFSLQD----VSSMRSE 565 (769)
T ss_pred HHHHHHHHHhhcccHHHHHHhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHccchHHH----HHHHHHH
Q ss_pred HHHHHhhHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHH
Q 006828 213 LKKEKNERDGDIEAFKKEKGLLGKRLVGLEKETDDLKLKIKVIVKEKNAIEMQNSEQKVINDELEKEVNKLNEIVLALQK 292 (629)
Q Consensus 213 L~~E~~~l~~~i~~l~~~~~~l~~el~el~~ei~~l~~~ie~l~~el~ele~~~e~l~~el~ele~ela~l~e~l~~l~~ 292 (629)
+..........-................+..+++.+......+...+......++..+.++.+.+..+..++.++.....
T Consensus 566 IK~~f~~~ss~e~E~~~~dea~~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~ke 645 (769)
T PF05911_consen 566 IKKNFDGDSSSEAEINSEDEADTSEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKE 645 (769)
T ss_pred HHHhhhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006828 293 EEKVLCGKILELENSCSEAMDEKLEMVLEIKALLDQEREKQKRIERLIEEKDEISHRLEKAVVVLDDKEGEIAKLLREKN 372 (629)
Q Consensus 293 ~~~~l~~~i~~le~~l~~~~~~~~~l~~ei~~l~~e~~e~~~~l~~l~~e~~~le~~i~el~~el~~l~~~leel~~e~~ 372 (629)
....+...+.-.......+..+...+..++..+... +..|..++..-...-.++.....+++..+........
T Consensus 646 S~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~K-------i~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~~~ 718 (769)
T PF05911_consen 646 SNSLAETQLKAMKESYESLETRLKDLEAEAEELQSK-------ISSLEEELEKERALSEELEAKCRELEEELERMKKEES 718 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH-------HHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhcccc
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 373 DIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQL 416 (629)
Q Consensus 373 ~l~e~~~~~e~el~~l~~el~~l~~~l~~le~~~~~le~ei~~l 416 (629)
..... ....-..-..+|...-..+..++..+..|-.++..+
T Consensus 719 ~~~~~---~~~~k~kqe~EiaaAA~KLAECQeTI~sLGkQLksL 759 (769)
T PF05911_consen 719 LQQLA---NEDKKIKQEKEIAAAAEKLAECQETIASLGKQLKSL 759 (769)
T ss_pred hhhcc---ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 125
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=94.59 E-value=5.9 Score=40.23 Aligned_cols=37 Identities=14% Similarity=0.158 Sum_probs=29.0
Q ss_pred hchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 460 KRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEE 496 (629)
Q Consensus 460 ~vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e 496 (629)
|...-.-.-|+++++.|..=...+..|+..+..|...
T Consensus 155 p~q~~~~sk~e~L~ekynkeveerkrle~e~k~lq~k 191 (307)
T PF10481_consen 155 PSQYYSDSKYEELQEKYNKEVEERKRLEAEVKALQAK 191 (307)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHhcc
Confidence 3444566789999999999888888888888877753
No 126
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.53 E-value=9.6 Score=42.34 Aligned_cols=107 Identities=19% Similarity=0.244 Sum_probs=60.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhhccc-------hHHHHHHHHHHHHHHhhhhhhHhhhhHhH-HHHhhhhhHH-
Q 006828 493 LAEEKELMQKNLLEAKRNADDLRAKMESIGFN-------SDRALSMLKNTAAMVCQSENDIDGQQELV-VDEKKLQGET- 563 (629)
Q Consensus 493 L~~e~~~l~~~l~~~~k~i~~Lk~~I~~lg~v-------aiee~~~~ker~~fl~~q~~D~~ak~~l~-~i~~~~~~m~- 563 (629)
.....+.+...+-.++.-+.-.+.+|..|-+| |.=....+++.|+-= |.-+. ++.+|..+.+
T Consensus 596 ~dk~~e~l~~~ilklksllstkreqi~tlrtvlkankqtaevaltnlksKYEnE---------K~mvtetm~KlRnELk~ 666 (772)
T KOG0999|consen 596 ADKDKEALMEQILKLKSLLSTKREQITTLRTVLKANKQTAEVALTNLKSKYENE---------KAMVTETMDKLRNELKA 666 (772)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHhhhhhH---------HHHHHHHHHHHHHHHHH
Confidence 33445555666666666666667777777777 333555566666422 22223 4555554443
Q ss_pred -HHHHHHHHHHHHHccchhHhHHHHHHHHHHHhhhHHhhc--ccchhhhHh
Q 006828 564 -DQYAAEFQAIVNAFRNREKLVEDMKHRVELMQNSVEAQK--KKSFWTVVS 611 (629)
Q Consensus 564 -~~f~~~f~~i~~~F~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 611 (629)
..=..+|..+...|..|= |....|++-|+.-..|.- |+.+-++++
T Consensus 667 Lkedaatfsslramf~~R~---ee~~tq~de~~~ql~aaedekKtln~llr 714 (772)
T KOG0999|consen 667 LKEDAATFSSLRAMFAARC---EEYVTQLDELQRQLAAAEDEKKTLNQLLR 714 (772)
T ss_pred HHHHHHHHHHHHHHhcchH---HHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 233678999999999764 344555555555552221 445555544
No 127
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.29 E-value=8 Score=40.40 Aligned_cols=22 Identities=9% Similarity=0.258 Sum_probs=9.2
Q ss_pred hHHHHHHHHHHHHhHHHhHHHH
Q 006828 136 RENEIIALKSEVSGLMGNIENE 157 (629)
Q Consensus 136 Rk~Ei~~L~eela~l~~~~~~~ 157 (629)
|...+...-.++..+..-++.+
T Consensus 53 rv~qmtkty~Didavt~lLeEk 74 (306)
T PF04849_consen 53 RVSQMTKTYNDIDAVTRLLEEK 74 (306)
T ss_pred chhhhhcchhhHHHHHHHHHHH
Confidence 3333334444444444444433
No 128
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.20 E-value=0.8 Score=44.90 Aligned_cols=68 Identities=24% Similarity=0.306 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 357 LDDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNELADYK 424 (629)
Q Consensus 357 l~~l~~~leel~~e~~~l~e~~~~~e~el~~l~~el~~l~~~l~~le~~~~~le~ei~~l~~~l~~y~ 424 (629)
+..+...+..+......+...+......+..++.++..+.-.+..++.++.+++.+...+..++..+.
T Consensus 118 l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k 185 (194)
T PF08614_consen 118 LAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQRK 185 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444555555556666666666666677777777777888888877776444
No 129
>PRK11281 hypothetical protein; Provisional
Probab=94.12 E-value=20 Score=44.34 Aligned_cols=48 Identities=2% Similarity=-0.013 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhH
Q 006828 227 FKKEKGLLGKRLVGLEKETDDLKLKIKVIVKEKNAIEMQNSEQKVIND 274 (629)
Q Consensus 227 l~~~~~~l~~el~el~~ei~~l~~~ie~l~~el~ele~~~e~l~~el~ 274 (629)
+...+......++..+..+...+..+......-+..+..+.....++.
T Consensus 126 LEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~Rlq 173 (1113)
T PRK11281 126 LESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQ 173 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 333333333344444444444444333333333333333333333333
No 130
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=94.02 E-value=14 Score=42.36 Aligned_cols=64 Identities=22% Similarity=0.205 Sum_probs=32.3
Q ss_pred hhhhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 006828 131 EEKNERENEIIALKSEVSGLMGNIENERERLSQACREKDLMKGELDCQVKEASRLKDRLIEMEG 194 (629)
Q Consensus 131 ~~~~~Rk~Ei~~L~eela~l~~~~~~~ke~l~~L~~~~~~l~~~l~~~~~~l~~l~~~l~ele~ 194 (629)
.+|+..-.|++.|..++..+...-..-+-.|..--.+++.+...-...+.+...+...+...+.
T Consensus 66 elis~qlqE~rrle~e~~~lre~sl~qkmrLe~qa~Ele~l~~ae~agraEae~Lraala~ae~ 129 (739)
T PF07111_consen 66 ELISRQLQELRRLEEEVRALRETSLQQKMRLEAQAEELEALARAEKAGRAEAEELRAALAGAEV 129 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHH
Confidence 6677777889999998877665432222233322233333322223333444444444444333
No 131
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=93.91 E-value=13 Score=44.40 Aligned_cols=49 Identities=12% Similarity=0.161 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHH-hhhchHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 441 LDEQRKSGMDLRLKLSE-MEKRFEEKVEELAKTRNERETLVDLRKKMESH 489 (629)
Q Consensus 441 l~~~k~~i~~Lk~eI~~-LG~vN~~AIeEyeevkeRyefL~~Q~~DLe~~ 489 (629)
+-.++.++..++..|.. +..+....-.+|.....+..-|..+..++..+
T Consensus 318 v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~~~~ 367 (754)
T TIGR01005 318 VVAAKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQLKAA 367 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555433 33333333445555555555555555555333
No 132
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=93.88 E-value=22 Score=43.94 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=15.3
Q ss_pred HHHHHHHHhhhhhhhhHHHhhhhhc
Q 006828 77 AALEAELSLFGVEKSELLAELSGES 101 (629)
Q Consensus 77 ~~~~~~l~~~~~~~~~l~~~~~~~~ 101 (629)
+.+...+..+-.++..+++++....
T Consensus 68 ~~~~~~i~~ap~~~~~~~~~l~~~~ 92 (1109)
T PRK10929 68 KQYQQVIDNFPKLSAELRQQLNNER 92 (1109)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhhh
Confidence 3333447777777777777776533
No 133
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=93.73 E-value=10 Score=39.64 Aligned_cols=10 Identities=10% Similarity=-0.094 Sum_probs=4.5
Q ss_pred HHHHHHHHHH
Q 006828 137 ENEIIALKSE 146 (629)
Q Consensus 137 k~Ei~~L~ee 146 (629)
+..+......
T Consensus 37 ~~~~~~~l~y 46 (306)
T PF04849_consen 37 PEQIEETLRY 46 (306)
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 134
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=93.47 E-value=8.7 Score=38.02 Aligned_cols=24 Identities=8% Similarity=0.098 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 393 GELRDVVFKLKASCRDQQDKSKQL 416 (629)
Q Consensus 393 ~~l~~~l~~le~~~~~le~ei~~l 416 (629)
..+...+.+...+...|-..++.+
T Consensus 178 ~SLe~~LeQK~kEn~ELtkICDeL 201 (207)
T PF05010_consen 178 QSLEESLEQKTKENEELTKICDEL 201 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 135
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=93.35 E-value=7.9 Score=37.23 Aligned_cols=121 Identities=22% Similarity=0.269 Sum_probs=60.7
Q ss_pred hHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHH
Q 006828 372 NDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNELADYKSALDQATLERDNAWKDLDEQRKSGMDL 451 (629)
Q Consensus 372 ~~l~e~~~~~e~el~~l~~el~~l~~~l~~le~~~~~le~ei~~l~~~l~~y~~~le~a~~~~~~~~~~l~~~k~~i~~L 451 (629)
..+.+.+.....++..+..........+.....++.-+..++..+...+......+..+...........+.++.....|
T Consensus 52 ~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l 131 (177)
T PF13870_consen 52 QQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKL 131 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444434333333322222112223333333333
Q ss_pred HHHHHHhhh-chHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 452 RLKLSEMEK-RFEEKVEELAKTRNERETLVDLRKKMESHIGLLAE 495 (629)
Q Consensus 452 k~eI~~LG~-vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~ 495 (629)
+. ..|. .+|.....|....+.++.+......|...+..+..
T Consensus 132 ~~---~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l~rk~~~l~~ 173 (177)
T PF13870_consen 132 RQ---QGGLLGVPALLRDYDKTKEEVEELRKEIKELERKVEILEM 173 (177)
T ss_pred HH---hcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 2333 34777778998888888887777777777766654
No 136
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=93.27 E-value=15 Score=40.16 Aligned_cols=10 Identities=20% Similarity=0.285 Sum_probs=3.5
Q ss_pred hHHHHHHHHH
Q 006828 240 GLEKETDDLK 249 (629)
Q Consensus 240 el~~ei~~l~ 249 (629)
.+.+-...++
T Consensus 313 k~~~~~~~mk 322 (622)
T COG5185 313 KYENYVNAMK 322 (622)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 137
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=93.17 E-value=33 Score=43.78 Aligned_cols=235 Identities=12% Similarity=0.117 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhH--HHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 006828 179 VKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKNER--DGDIEAFKKEKGLLGKRLVGLEKETDDLKLKIKVIV 256 (629)
Q Consensus 179 ~~~l~~l~~~l~ele~~~~~le~q~~~l~~e~~~L~~E~~~l--~~~i~~l~~~~~~l~~el~el~~ei~~l~~~ie~l~ 256 (629)
...+..+...|.++...+..+..++..+..+...|..+...+ ...+.............+......+...........
T Consensus 741 ~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~Ps~~dL~~A~~~l~~A~~~~~~a~~~l~~a~~~l~~a~ 820 (1353)
T TIGR02680 741 LRRIAELDARLAAVDDELAELARELRALGARQRALADELAGAPSDRSLRAAHRRAAEAERQAESAERELARAARKAAAAA 820 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhhhHHHHh---------hHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 257 KEKNAIEMQNSEQKVI---------NDELEKEVNKLNEIVLALQKEEKVLC---GKILELENSCSEAMDEKLEMVLEIKA 324 (629)
Q Consensus 257 ~el~ele~~~e~l~~e---------l~ele~ela~l~e~l~~l~~~~~~l~---~~i~~le~~l~~~~~~~~~l~~ei~~ 324 (629)
.........+...-.. +......+..+...+..+......+. ..+.....++..+.........+...
T Consensus 821 ~~~~~a~~~l~~aaa~l~L~a~~~~l~~~~~aL~~y~~~l~~l~~~~~~L~~A~~~~~~a~~~le~ae~~l~~~~~e~~~ 900 (1353)
T TIGR02680 821 AAWKQARRELERDAADLDLPTDPDALEAVGLALKRFGDHLHTLEVAVRELRHAATRAAEQRARAARAESDAREAAEDAAE 900 (1353)
T ss_pred HHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHH
Q 006828 325 LLDQEREKQKRIERLIEEKDEISHRLEKAVVVLDDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKA 404 (629)
Q Consensus 325 l~~e~~e~~~~l~~l~~e~~~le~~i~el~~el~~l~~~leel~~e~~~l~e~~~~~e~el~~l~~el~~l~~~l~~le~ 404 (629)
+..++......+..+...+... +.++..++......+..+..++..+..........+..+...+......+.....
T Consensus 901 ~~~e~~~a~~~l~~l~e~l~~~---~eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~~~~~~a~~~~~~a~~~~~~~~~ 977 (1353)
T TIGR02680 901 ARAEAEEASLRLRTLEESVGAM---VDEIRARLAETRAALASGGRELPRLAEALATAEEARGRAEEKRAEADATLDERAE 977 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHH
Q 006828 405 SCRDQQDKSKQL 416 (629)
Q Consensus 405 ~~~~le~ei~~l 416 (629)
.-.-...-...+
T Consensus 978 ~~~~~~~~~~e~ 989 (1353)
T TIGR02680 978 ARDHAIGQLREF 989 (1353)
T ss_pred HHHHHHHHHHHH
No 138
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=93.17 E-value=12 Score=38.95 Aligned_cols=173 Identities=20% Similarity=0.233 Sum_probs=86.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHhhhhhhhhHHHhhhhhccchhhhhhhhhhHHHHHhhHhHhhhcchhhhhhhhHHHHHHHH
Q 006828 65 QRQQVESLSQAKAALEAELSLFGVEKSELLAELSGESDQKVSLEIEKGLFCVFLMTQMKEMGEGLDEEKNERENEIIALK 144 (629)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~Rk~Ei~~L~ 144 (629)
-+.-|+||.+--..|-.+|...-.....|..++.+++...|.+-...-.---|+= ..|.
T Consensus 25 l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~is---------------------N~Ll 83 (310)
T PF09755_consen 25 LRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFIS---------------------NTLL 83 (310)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHH
Confidence 3445677777777777778777788888999999999888766443211111211 1344
Q ss_pred HHHHhHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHhhHHHh
Q 006828 145 SEVSGLMGNIENERERLSQACREKDLMKGELDCQVKEASRLKDRLIEMEGKERN-LRSEILVLQSDYGRLKKEKNERDGD 223 (629)
Q Consensus 145 eela~l~~~~~~~ke~l~~L~~~~~~l~~~l~~~~~~l~~l~~~l~ele~~~~~-le~q~~~l~~e~~~L~~E~~~l~~~ 223 (629)
..+.++.+.+..+-.. +..+-.-+. ..+...+..+.....+++..+.. -+..+.++...+..+..+.......
T Consensus 84 Kkl~~l~keKe~L~~~---~e~EEE~lt---n~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~ 157 (310)
T PF09755_consen 84 KKLQQLKKEKETLALK---YEQEEEFLT---NDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEE 157 (310)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4444444433333222 222222221 23344666666666666665543 3344555555555555544444444
Q ss_pred HHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHh
Q 006828 224 IEAFKKEKGLLGKRLVG-LEKETDDLKLKIKVIVKEKNAIEM 264 (629)
Q Consensus 224 i~~l~~~~~~l~~el~e-l~~ei~~l~~~ie~l~~el~ele~ 264 (629)
+..+..++.+++..+.. -+.-++.|...+..+..+...++.
T Consensus 158 le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~ 199 (310)
T PF09755_consen 158 LERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQE 199 (310)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444333321 112233344444444444443333
No 139
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=93.16 E-value=14 Score=39.38 Aligned_cols=6 Identities=0% Similarity=0.395 Sum_probs=2.3
Q ss_pred hhHHHH
Q 006828 112 GLFCVF 117 (629)
Q Consensus 112 ~~~~~~ 117 (629)
|.+-+|
T Consensus 68 P~Lely 73 (325)
T PF08317_consen 68 PMLELY 73 (325)
T ss_pred hHHHHH
Confidence 333333
No 140
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=93.01 E-value=14 Score=39.01 Aligned_cols=19 Identities=26% Similarity=0.436 Sum_probs=7.7
Q ss_pred HHHHHHhHHHHHHHHHHHH
Q 006828 336 IERLIEEKDEISHRLEKAV 354 (629)
Q Consensus 336 l~~l~~e~~~le~~i~el~ 354 (629)
+..+.++...+...+....
T Consensus 205 l~q~qeE~~l~k~~i~KYK 223 (319)
T PF09789_consen 205 LKQLQEEKELLKQTINKYK 223 (319)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444433333333
No 141
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=92.79 E-value=7.6 Score=35.51 Aligned_cols=15 Identities=20% Similarity=0.357 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 006828 301 ILELENSCSEAMDEK 315 (629)
Q Consensus 301 i~~le~~l~~~~~~~ 315 (629)
+..+..++.++..+.
T Consensus 107 ~~~~~~r~~dL~~QN 121 (132)
T PF07926_consen 107 LSELEQRIEDLNEQN 121 (132)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 142
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=92.63 E-value=16 Score=38.68 Aligned_cols=99 Identities=12% Similarity=0.132 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHhhhchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhc
Q 006828 443 EQRKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIG 522 (629)
Q Consensus 443 ~~k~~i~~Lk~eI~~LG~vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~lg 522 (629)
.+..++..|+.....+..+. .+++..+++.+.....+.......+..++.++..+...+.....+...+..+|.++-
T Consensus 183 ~L~~e~~~L~~~~~e~~~~d---~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae 259 (312)
T smart00787 183 ALEEELRQLKQLEDELEDCD---PTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAE 259 (312)
T ss_pred HHHHHHHHHHHhHHHHHhCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433 345555556666666666666666666666666666666666666666666666665
Q ss_pred cc-------hHHHHHHHHHHHHHHhhhhh
Q 006828 523 FN-------SDRALSMLKNTAAMVCQSEN 544 (629)
Q Consensus 523 ~v-------aiee~~~~ker~~fl~~q~~ 544 (629)
.+ +..|...++.+|+||..+..
T Consensus 260 ~~~~~~r~~t~~Ei~~Lk~~~~~Le~l~g 288 (312)
T smart00787 260 KKLEQCRGFTFKEIEKLKEQLKLLQSLTG 288 (312)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHhC
Confidence 54 88899999999999987643
No 143
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=92.42 E-value=20 Score=39.54 Aligned_cols=49 Identities=12% Similarity=0.105 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHhhhchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 444 QRKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEE 496 (629)
Q Consensus 444 ~k~~i~~Lk~eI~~LG~vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e 496 (629)
+...+..++..+..+.. ...+|..+...++.....+..|..++...+.+
T Consensus 323 l~~~l~~~~~~~~~l~~----~~~~~~~L~r~~~~~~~~y~~ll~r~~e~~l~ 371 (444)
T TIGR03017 323 LREALENQKAKVLELNR----QRDEMSVLQRDVENAQRAYDAAMQRYTQTRIE 371 (444)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444443333 35678888889999999999988888877653
No 144
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=92.41 E-value=2.3 Score=41.64 Aligned_cols=56 Identities=29% Similarity=0.270 Sum_probs=22.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHH
Q 006828 237 RLVGLEKETDDLKLKIKVIVKEKNAIEMQNSEQKVINDELEKEVNKLNEIVLALQK 292 (629)
Q Consensus 237 el~el~~ei~~l~~~ie~l~~el~ele~~~e~l~~el~ele~ela~l~e~l~~l~~ 292 (629)
.+..+...+..+...+..+...+.+....++.++.++..+...+..+++.+..+..
T Consensus 117 ~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~ 172 (194)
T PF08614_consen 117 RLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEE 172 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444444444444444444444444444443333333
No 145
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=92.17 E-value=25 Score=39.95 Aligned_cols=108 Identities=17% Similarity=0.144 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHhhhchH------HhHHHHHHH-HHHHHHHHHH
Q 006828 410 QDKSKQLVNELADYKSALDQATLERDNAWKDLDEQRKSGMDLRLKLSEMEKRFE------EKVEELAKT-RNERETLVDL 482 (629)
Q Consensus 410 e~ei~~l~~~l~~y~~~le~a~~~~~~~~~~l~~~k~~i~~Lk~eI~~LG~vN~------~AIeEyeev-keRyefL~~Q 482 (629)
-..+..+...+..+...++.+...... ..+.+++++++.-|+.- ++|+ +. +...-++.+ =++--+|..+
T Consensus 316 ~~qI~~le~~l~~~~~~leel~~kL~~-~sDYeeIK~ELsiLk~i--ef~~-se~a~~~~~~~~~leslLl~knr~lq~e 391 (629)
T KOG0963|consen 316 KAQISALEKELKAKISELEELKEKLNS-RSDYEEIKKELSILKAI--EFGD-SEEANDEDETAKTLESLLLEKNRKLQNE 391 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh-hccHHHHHHHHHHHHHh--hcCC-cccccccccccchHHHHHHHHHhhhhHH
Confidence 334444444444444444444433333 24566666666666542 1220 11 111112222 3444556666
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Q 006828 483 RKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESI 521 (629)
Q Consensus 483 ~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~l 521 (629)
..-|......+.+++..+......+.......+.-|..+
T Consensus 392 ~a~Lr~~n~~~~~~~~~~~~~~~el~~~~~~~ke~i~kl 430 (629)
T KOG0963|consen 392 NASLRVANSGLSGRITELSKKGEELEAKATEQKELIAKL 430 (629)
T ss_pred HHHHhccccccchhHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 666666666666666666665555555555555554444
No 146
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=92.13 E-value=16 Score=37.58 Aligned_cols=31 Identities=6% Similarity=0.189 Sum_probs=13.8
Q ss_pred chHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 461 RFEEKVEELAKTRNERETLVDLRKKMESHIG 491 (629)
Q Consensus 461 vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~ 491 (629)
.|..-..-++.+...+..+..+...+...+.
T Consensus 214 ln~~n~~~l~~~~~k~~~l~~~~~~~~~~L~ 244 (264)
T PF06008_consen 214 LNRANQKNLEDLEKKKQELSEQQNEVSETLK 244 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444444
No 147
>PRK10869 recombination and repair protein; Provisional
Probab=92.06 E-value=27 Score=40.06 Aligned_cols=132 Identities=12% Similarity=0.059 Sum_probs=88.4
Q ss_pred cHHHHHHHHHHHHHHHHHhhhchHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-----
Q 006828 440 DLDEQRKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVD---LRKKMESHIGLLAEEKELMQKNLLEAKRNA----- 511 (629)
Q Consensus 440 ~l~~~k~~i~~Lk~eI~~LG~vN~~AIeEyeevkeRyefL~~---Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i----- 511 (629)
.++.+..++..|..-....|+-..+.++-+++.+.+++.+.. ....|..++..+..+.......+...++..
T Consensus 297 ~l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~~l~ 376 (553)
T PRK10869 297 RLAELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQRYAKELA 376 (553)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468889999999999999999888889988888888877655 467788888888888877777777665554
Q ss_pred HHHHHHHHhhccc------hHHH---H--HHHHHHHHHHhhhhhhHhhhhHhH-HHHhhhhhHHHHHHHHHHHHHH
Q 006828 512 DDLRAKMESIGFN------SDRA---L--SMLKNTAAMVCQSENDIDGQQELV-VDEKKLQGETDQYAAEFQAIVN 575 (629)
Q Consensus 512 ~~Lk~~I~~lg~v------aiee---~--~~~ker~~fl~~q~~D~~ak~~l~-~i~~~~~~m~~~f~~~f~~i~~ 575 (629)
..+...+..||.- .+.. + ..=-++.+|+-.- +....+. +.+-+-.++..++.=++..+..
T Consensus 377 ~~v~~~L~~L~m~~a~f~v~~~~~~~~~~~~G~d~veF~~~~----n~g~~~~pL~k~lSgGe~~Ri~LA~~~~~~ 448 (553)
T PRK10869 377 QLITESMHELSMPHGKFTIDVKFDPEHLSADGADRIEFRVTT----NPGQPLQPIAKVASGGELSRIALAIQVITA 448 (553)
T ss_pred HHHHHHHHHcCCCCcEEEEEEecCCCCCCCCCceEEEEEEec----CCCCCcchhhhhCCHHHHHHHHHHHHHHhc
Confidence 4667777778872 2211 0 0000122332221 1233344 5555677778888777777653
No 148
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=92.02 E-value=9.6 Score=34.86 Aligned_cols=17 Identities=29% Similarity=0.339 Sum_probs=6.5
Q ss_pred HHHHHHHHhHHHhHHHH
Q 006828 141 IALKSEVSGLMGNIENE 157 (629)
Q Consensus 141 ~~L~eela~l~~~~~~~ 157 (629)
..|..++..+.......
T Consensus 6 ~~l~~e~~~~~~~~~~~ 22 (132)
T PF07926_consen 6 SSLQSELQRLKEQEEDA 22 (132)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 149
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=91.96 E-value=14 Score=36.51 Aligned_cols=19 Identities=21% Similarity=0.340 Sum_probs=7.2
Q ss_pred HHHHHHHHHHhhhhHHHHH
Q 006828 359 DKEGEIAKLLREKNDIEER 377 (629)
Q Consensus 359 ~l~~~leel~~e~~~l~e~ 377 (629)
.+...+..+..++.+|...
T Consensus 111 vL~qr~~kle~ErdeL~~k 129 (201)
T PF13851_consen 111 VLEQRFEKLEQERDELYRK 129 (201)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 150
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=91.80 E-value=29 Score=39.88 Aligned_cols=84 Identities=19% Similarity=0.241 Sum_probs=56.0
Q ss_pred cHHHHHHHHHHHHHHHHHhhhchHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-----
Q 006828 440 DLDEQRKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVD---LRKKMESHIGLLAEEKELMQKNLLEAKRNA----- 511 (629)
Q Consensus 440 ~l~~~k~~i~~Lk~eI~~LG~vN~~AIeEyeevkeRyefL~~---Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i----- 511 (629)
.++.+..++..+..-....|+-....+..++.+..+++.+.. ....|..++..+..+...+...+...++..
T Consensus 302 ~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a~~l~ 381 (563)
T TIGR00634 302 RLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLIRRKAAERLA 381 (563)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777888888888888887777777777777777766544 355666666666666666666665554444
Q ss_pred HHHHHHHHhhcc
Q 006828 512 DDLRAKMESIGF 523 (629)
Q Consensus 512 ~~Lk~~I~~lg~ 523 (629)
..+...+..||.
T Consensus 382 ~~v~~~l~~L~m 393 (563)
T TIGR00634 382 KRVEQELKALAM 393 (563)
T ss_pred HHHHHHHHhCCC
Confidence 355566666665
No 151
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.76 E-value=26 Score=41.36 Aligned_cols=30 Identities=10% Similarity=0.209 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHhhhchHHhHHHHHHHHHH
Q 006828 446 KSGMDLRLKLSEMEKRFEEKVEELAKTRNE 475 (629)
Q Consensus 446 ~~i~~Lk~eI~~LG~vN~~AIeEyeevkeR 475 (629)
.+.+.++.-+...|...-..|.+...++..
T Consensus 685 ~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~~ 714 (717)
T PF10168_consen 685 SQKRTIKEILKQQGEEIDELVKQIKNIKKI 714 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555555555555555554443
No 152
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=91.69 E-value=8.1 Score=41.60 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=17.3
Q ss_pred hhcccCCCCCCcHHHHHhhhhhhHHHhhH
Q 006828 33 VALTHRNSMEDPSEQIKRLKSLNDLLVHR 61 (629)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 61 (629)
-+|.+++ ++.-..-|-+|++.=|+-
T Consensus 92 ~kLk~G~----Ge~vc~VLd~Lad~AL~~ 116 (359)
T PF10498_consen 92 SKLKQGS----GEHVCYVLDQLADEALKR 116 (359)
T ss_pred HHhhCCC----CHHHHHHHHHHHHHHHHh
Confidence 3455666 777777787777776663
No 153
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.09 E-value=27 Score=38.15 Aligned_cols=24 Identities=13% Similarity=0.266 Sum_probs=17.6
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHh
Q 006828 497 KELMQKNLLEAKRNADDLRAKMES 520 (629)
Q Consensus 497 ~~~l~~~l~~~~k~i~~Lk~~I~~ 520 (629)
++.+..++...++....|..+|..
T Consensus 497 lEkl~~Dyqairqen~~L~~~iR~ 520 (521)
T KOG1937|consen 497 LEKLHQDYQAIRQENDQLFSEIRL 520 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445777888888888888877753
No 154
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=90.34 E-value=11 Score=37.88 Aligned_cols=7 Identities=14% Similarity=0.116 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 006828 162 SQACREK 168 (629)
Q Consensus 162 ~~L~~~~ 168 (629)
..+..+.
T Consensus 35 ~e~~kE~ 41 (230)
T PF10146_consen 35 EEYRKEM 41 (230)
T ss_pred HHHHHHH
Confidence 3333333
No 155
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=90.28 E-value=37 Score=38.52 Aligned_cols=38 Identities=16% Similarity=0.308 Sum_probs=21.9
Q ss_pred HHHHHhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHH
Q 006828 364 IAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFK 401 (629)
Q Consensus 364 leel~~e~~~l~e~~~~~e~el~~l~~el~~l~~~l~~ 401 (629)
..++..++...+..+....+++..|++++.....+..+
T Consensus 219 v~e~~~erlqye~klkstk~e~a~L~Eq~~eK~~e~~r 256 (861)
T KOG1899|consen 219 VGEVVQERLQYETKLKSTKGEMAPLREQRSEKNDEEMR 256 (861)
T ss_pred HHHHHHHHHHHHhhcccccchhhhHHHHHhhhhhHHHH
Confidence 44555566666666666666666666666554444333
No 156
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=90.20 E-value=40 Score=38.72 Aligned_cols=22 Identities=23% Similarity=0.173 Sum_probs=14.4
Q ss_pred hhhhhhhHHHHHHHHHHHHhHH
Q 006828 130 DEEKNERENEIIALKSEVSGLM 151 (629)
Q Consensus 130 d~~~~~Rk~Ei~~L~eela~l~ 151 (629)
|...--.+.....+-+.++++.
T Consensus 136 ~~~~l~~~~~~~~lLD~~~~~~ 157 (563)
T TIGR00634 136 DQQLLFRPDEQRQLLDTFAGAN 157 (563)
T ss_pred HHHHhcCHHHHHHHHHHhcCch
Confidence 4455556777777777777753
No 157
>PF11657 Activator-TraM: Transcriptional activator TraM
Probab=90.17 E-value=9.3 Score=35.54 Aligned_cols=67 Identities=15% Similarity=0.235 Sum_probs=42.1
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHccchhHhHHHHHHHHHHHhhhHHhhcccchhhhHhhHHHHHHHHHHHHHh
Q 006828 554 VDEKKLQGETDQYAAEFQAIVNAFRNREKLVEDMKHRVELMQNSVEAQKKKSFWTVVSSATTIFAAASVAYIA 626 (629)
Q Consensus 554 ~i~~~~~~m~~~f~~~f~~i~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (629)
........|.+.+.+.+..+...++. .|+..-.++ .-.+.--++-.+|++++|+.++|||+-++++.
T Consensus 77 al~~ske~m~~~l~e~~~~~~~avk~---~i~~~~~~~---~~~~~~~r~~a~~nl~aa~~~~~aa~v~~~~~ 143 (144)
T PF11657_consen 77 ALAASKEAMNKILQESAQEIVEAVKS---EIDNSLAEV---NDLVREARKAAILNLVAAVLVLLAACVALWVS 143 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555666666666666665554 244443333 33443335678899999999999998777653
No 158
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=90.14 E-value=43 Score=39.01 Aligned_cols=61 Identities=20% Similarity=0.264 Sum_probs=33.0
Q ss_pred cHHHHHhhhhhhHHHhhHhHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhHHHhhhhhccch
Q 006828 44 PSEQIKRLKSLNDLLVHRSHEQRQQVESLSQAKAALEAELSLFGVEKSELLAELSGESDQK 104 (629)
Q Consensus 44 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 104 (629)
...+..+|..+++-|..-...--.++-.+...=.+.++.....-...+++..++.-++.-.
T Consensus 53 L~~e~e~Lq~~~~~~~~~~~~~~~~~~el~~k~s~~~~~~~e~~~~le~~~~d~eki~~~~ 113 (698)
T KOG0978|consen 53 LAEENEKLQNLADHLQEKHATLSEQISELLDKISTAETEVDELEQQLEDLQADLEKIRRRS 113 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHH
Confidence 3455555666666665555555555555555544445555555555555555555554433
No 159
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=89.90 E-value=6.6 Score=41.52 Aligned_cols=16 Identities=6% Similarity=0.005 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHhHH
Q 006828 140 IIALKSEVSGLMGNIE 155 (629)
Q Consensus 140 i~~L~eela~l~~~~~ 155 (629)
++.+..+.+.+..++.
T Consensus 18 ~~~~~~E~~~Y~~fL~ 33 (314)
T PF04111_consen 18 LEQAEKERDTYQEFLK 33 (314)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444433
No 160
>PF13514 AAA_27: AAA domain
Probab=89.80 E-value=63 Score=40.41 Aligned_cols=37 Identities=24% Similarity=0.235 Sum_probs=16.7
Q ss_pred HHhHHHHHHHHHHHHHHHhhhhhhhhHHHhhhhhccc
Q 006828 67 QQVESLSQAKAALEAELSLFGVEKSELLAELSGESDQ 103 (629)
Q Consensus 67 ~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~ 103 (629)
.+|..|...+..|+..+.....+......++..+...
T Consensus 346 ~~i~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 382 (1111)
T PF13514_consen 346 ERIRELLQEREQLEQALAQARRELEEAERELEQLQAE 382 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444443
No 161
>PRK09343 prefoldin subunit beta; Provisional
Probab=89.74 E-value=14 Score=33.32 Aligned_cols=103 Identities=16% Similarity=0.134 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHhhhchHH--h
Q 006828 388 LHKEIGELRDVVFKLKASCRDQQDKSKQLVNELADYKSALDQATLERDNAWKDLDEQRKSGMDLRLKLSEMEKRFEE--K 465 (629)
Q Consensus 388 l~~el~~l~~~l~~le~~~~~le~ei~~l~~~l~~y~~~le~a~~~~~~~~~~l~~~k~~i~~Lk~eI~~LG~vN~~--A 465 (629)
+..++......+..++.++..+......+...+.....++..+...-+ +.. =-...|||.+. .
T Consensus 5 ~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~----d~~-----------VYk~VG~vlv~qd~ 69 (121)
T PRK09343 5 IPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPD----DTP-----------IYKIVGNLLVKVDK 69 (121)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC----cch-----------hHHHhhHHHhhccH
Confidence 344445555555556666666666666666666666666655532111 111 13457887744 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 006828 466 VEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLL 505 (629)
Q Consensus 466 IeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~ 505 (629)
.+-...|++|.+|+......|+.+...++..+..++..+.
T Consensus 70 ~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~ 109 (121)
T PRK09343 70 TKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKIN 109 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344677888888887777777777777776555554443
No 162
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=89.40 E-value=37 Score=37.22 Aligned_cols=49 Identities=12% Similarity=0.105 Sum_probs=22.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHH
Q 006828 239 VGLEKETDDLKLKIKVIVKEKNAIEMQNSEQKVINDELEKEVNKLNEIV 287 (629)
Q Consensus 239 ~el~~ei~~l~~~ie~l~~el~ele~~~e~l~~el~ele~ela~l~e~l 287 (629)
..+.+.+..+...+...++.+.+.+.+.+.++-++..+...+..|++..
T Consensus 386 nd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry 434 (527)
T PF15066_consen 386 NDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERY 434 (527)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 3444444444444445555555554444444444444444444444433
No 163
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=89.33 E-value=44 Score=37.93 Aligned_cols=26 Identities=23% Similarity=0.161 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhhhhhhhhHHHhhhhh
Q 006828 75 AKAALEAELSLFGVEKSELLAELSGE 100 (629)
Q Consensus 75 ~~~~~~~~l~~~~~~~~~l~~~~~~~ 100 (629)
--+.+-..|.++..|...|+..+..+
T Consensus 110 e~a~lk~~l~e~~~El~~l~~~l~~l 135 (511)
T PF09787_consen 110 ELAVLKIRLQELDQELRRLRRQLEEL 135 (511)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555566666666666555
No 164
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=89.20 E-value=20 Score=33.92 Aligned_cols=40 Identities=15% Similarity=0.277 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 389 HKEIGELRDVVFKLKASCRDQQDKSKQLVNELADYKSALD 428 (629)
Q Consensus 389 ~~el~~l~~~l~~le~~~~~le~ei~~l~~~l~~y~~~le 428 (629)
-.....+.-.+.-++.+-..+....+.+..++..+..+++
T Consensus 83 Ye~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tie 122 (159)
T PF05384_consen 83 YEEAHELQVRLAMLREREKQLRERRDELERRLRNLEETIE 122 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333
No 165
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=89.03 E-value=29 Score=35.45 Aligned_cols=58 Identities=16% Similarity=0.175 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 006828 157 ERERLSQACREKDLMKGELDCQVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLK 214 (629)
Q Consensus 157 ~ke~l~~L~~~~~~l~~~l~~~~~~l~~l~~~l~ele~~~~~le~q~~~l~~e~~~L~ 214 (629)
++..+.+|.++.+.-.=.++.+...+..-+....+-...+..|+++-..+-...+.+.
T Consensus 23 lE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~le 80 (307)
T PF10481_consen 23 LEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLE 80 (307)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHH
Confidence 3344444444444333333333333333333333333333333333333333333333
No 166
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=88.93 E-value=4.6 Score=39.69 Aligned_cols=74 Identities=14% Similarity=0.086 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHh
Q 006828 467 EELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGFN---SDRALSMLKNTAAMVC 540 (629)
Q Consensus 467 eEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~lg~v---aiee~~~~ker~~fl~ 540 (629)
-+|-.++++|+.+....+.+.+.-..|..+++.++..+...+.+++.|..+..-|..- -..+|..++.|++-|.
T Consensus 128 ~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe 204 (290)
T COG4026 128 PEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELE 204 (290)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhc
Confidence 3333444444444333333333333333333333333333344444333333333322 1225555666665543
No 167
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=88.83 E-value=70 Score=39.67 Aligned_cols=8 Identities=25% Similarity=1.070 Sum_probs=5.2
Q ss_pred cchhhhHh
Q 006828 604 KSFWTVVS 611 (629)
Q Consensus 604 ~~~~~~~~ 611 (629)
.-+||.+.
T Consensus 523 al~~t~l~ 530 (1109)
T PRK10929 523 TVFWSILV 530 (1109)
T ss_pred HHHHHHHH
Confidence 45777774
No 168
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=88.52 E-value=16 Score=31.95 Aligned_cols=24 Identities=13% Similarity=0.322 Sum_probs=8.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHH
Q 006828 336 IERLIEEKDEISHRLEKAVVVLDD 359 (629)
Q Consensus 336 l~~l~~e~~~le~~i~el~~el~~ 359 (629)
+..+..+..+....+.+++..+++
T Consensus 46 l~~L~~q~~s~~qr~~eLqaki~e 69 (107)
T PF09304_consen 46 LQSLQAQNASRNQRIAELQAKIDE 69 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 169
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=88.08 E-value=25 Score=37.95 Aligned_cols=17 Identities=35% Similarity=0.468 Sum_probs=11.4
Q ss_pred cHHHHHhhhhhhHHHhh
Q 006828 44 PSEQIKRLKSLNDLLVH 60 (629)
Q Consensus 44 ~~~~~~~l~~~~~~l~~ 60 (629)
|.++|--.-+||+-|+.
T Consensus 38 p~eQF~~F~~L~~WL~~ 54 (359)
T PF10498_consen 38 PGEQFYYFTSLCAWLIS 54 (359)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 66666666666666665
No 170
>PRK13895 conjugal transfer protein TraM; Provisional
Probab=87.51 E-value=2.9 Score=38.33 Aligned_cols=25 Identities=16% Similarity=0.369 Sum_probs=19.5
Q ss_pred cccchhhhHhhHHHHHHHHHHHHHh
Q 006828 602 KKKSFWTVVSSATTIFAAASVAYIA 626 (629)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (629)
|+-+.|.+++|++|+||++-+.++.
T Consensus 119 r~~a~~nl~As~~~~~a~~v~~~~~ 143 (144)
T PRK13895 119 RRVAMMNLVASGMAVLAACVALWAS 143 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568899999999998888776653
No 171
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=87.41 E-value=41 Score=36.77 Aligned_cols=55 Identities=15% Similarity=0.194 Sum_probs=26.5
Q ss_pred HHHHHHHHHhHHHHHHhhHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 006828 202 EILVLQSDYGRLKKEKNERDGDIEAFKKEKGLLGKRLVGLEKETDDLKLKIKVIV 256 (629)
Q Consensus 202 q~~~l~~e~~~L~~E~~~l~~~i~~l~~~~~~l~~el~el~~ei~~l~~~ie~l~ 256 (629)
+++..+..+..+..+.+.+......+.......+..+..++..+.....++....
T Consensus 348 qlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~ 402 (493)
T KOG0804|consen 348 QLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEER 402 (493)
T ss_pred HHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444445555555455555555555544444444433
No 172
>PF13166 AAA_13: AAA domain
Probab=87.21 E-value=69 Score=37.73 Aligned_cols=11 Identities=18% Similarity=0.235 Sum_probs=5.7
Q ss_pred hhHHHHHHHHH
Q 006828 135 ERENEIIALKS 145 (629)
Q Consensus 135 ~Rk~Ei~~L~e 145 (629)
.+...+...+.
T Consensus 269 ~~~~~l~~~f~ 279 (712)
T PF13166_consen 269 ERKERLEKYFD 279 (712)
T ss_pred HHHHHHHHHHH
Confidence 45555555444
No 173
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=86.77 E-value=63 Score=36.80 Aligned_cols=46 Identities=11% Similarity=0.206 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHhHHHHHH
Q 006828 344 DEISHRLEKAVVVLDDKEGEIAKLLREKNDIEERKVCQDNEISGLH 389 (629)
Q Consensus 344 ~~le~~i~el~~el~~l~~~leel~~e~~~l~e~~~~~e~el~~l~ 389 (629)
.+++.+.-++-.++..++-.+..+.+++.+.++.++..+..+.+++
T Consensus 170 tsLETqKlDLmaevSeLKLkltalEkeq~e~E~K~R~se~l~qevn 215 (861)
T KOG1899|consen 170 TSLETQKLDLMAEVSELKLKLTALEKEQNETEKKLRLSENLMQEVN 215 (861)
T ss_pred hhHHHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHHHhHHHHHHHHH
Confidence 3444444455556666666666666666667777777666666655
No 174
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=86.64 E-value=11 Score=30.86 Aligned_cols=65 Identities=22% Similarity=0.308 Sum_probs=46.9
Q ss_pred HHhhhchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 006828 456 SEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMES 520 (629)
Q Consensus 456 ~~LG~vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~ 520 (629)
..|..-...|++.+..++.+.+.|..+...|......|..+...++.+...+..+++.|-..|..
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~~ 71 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKLEE 71 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 34444555677777777777777777777777777777777777777777888888777766653
No 175
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=86.25 E-value=8.2 Score=38.00 Aligned_cols=67 Identities=10% Similarity=0.128 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 354 VVVLDDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNEL 420 (629)
Q Consensus 354 ~~el~~l~~~leel~~e~~~l~e~~~~~e~el~~l~~el~~l~~~l~~le~~~~~le~ei~~l~~~l 420 (629)
...+.+++..+++...++.+|.+.+..+++++...+..+..+..+.+.++..+.++..+...+..++
T Consensus 134 ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~ 200 (290)
T COG4026 134 KEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRW 200 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHH
Confidence 3334444444555555555555555555555555555555555555555544444444444444333
No 176
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=85.97 E-value=17 Score=38.19 Aligned_cols=86 Identities=15% Similarity=0.162 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 006828 139 EIIALKSEVSGLMGNIENERERLSQACREKDLMKGELDCQVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKN 218 (629)
Q Consensus 139 Ei~~L~eela~l~~~~~~~ke~l~~L~~~~~~l~~~l~~~~~~l~~l~~~l~ele~~~~~le~q~~~l~~e~~~L~~E~~ 218 (629)
.++.|+..++++..+..+..-...+|..+...+.-+++.+...+..+...+..+...+........+++..+..+..++.
T Consensus 78 s~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~ 157 (302)
T PF09738_consen 78 SLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELD 157 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888999999999888888888888888888877777777777777777777766665555555555555555555544
Q ss_pred hHHHhH
Q 006828 219 ERDGDI 224 (629)
Q Consensus 219 ~l~~~i 224 (629)
.+...+
T Consensus 158 ~Lre~L 163 (302)
T PF09738_consen 158 ELREQL 163 (302)
T ss_pred HHHHHH
Confidence 444433
No 177
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=85.91 E-value=1e+02 Score=38.44 Aligned_cols=100 Identities=11% Similarity=0.132 Sum_probs=59.6
Q ss_pred HHhhhHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHhhhhhh-HhhhhHhH-HHHhhhhhHH-HHHHHHHHHHH
Q 006828 499 LMQKNLLEAKRNADDLRAKMESIGFN-SDRALSMLKNTAAMVCQSEND-IDGQQELV-VDEKKLQGET-DQYAAEFQAIV 574 (629)
Q Consensus 499 ~l~~~l~~~~k~i~~Lk~~I~~lg~v-aiee~~~~ker~~fl~~q~~D-~~ak~~l~-~i~~~~~~m~-~~f~~~f~~i~ 574 (629)
.+...+.++.+.+..+..+|-..+.- --+++..+.+.++.+.....+ ..--..+. -|........ ..|...-..-.
T Consensus 1012 ~l~~q~~e~~re~~~ld~Qi~~~~~~~~~ee~~~L~~~~~~l~se~~~~lg~~ke~e~~i~~~k~eL~~~~~kd~~~nyr 1091 (1294)
T KOG0962|consen 1012 NLERKLKELERELSELDKQILEADIKSVKEERVKLEEEREKLSSEKNLLLGEMKQYESQIKKLKQELREKDFKDAEKNYR 1091 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHhhhhhhccHHHHHH
Confidence 34445566667777777777777722 345888888888888888887 66666666 6666665555 44444433333
Q ss_pred HHcc---chhHhHHHHHHHHHHHhhhH
Q 006828 575 NAFR---NREKLVEDMKHRVELMQNSV 598 (629)
Q Consensus 575 ~~F~---~~~~~~~~~~~~~~~~~~~~ 598 (629)
..|- ...-+..|+-+=...|..|.
T Consensus 1092 ~~~ie~~tt~~~~~DL~ky~~aLD~Ai 1118 (1294)
T KOG0962|consen 1092 KALIELKTTELSNKDLDKYYKALDKAI 1118 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332 44444555544444444444
No 178
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=85.72 E-value=1.6 Score=45.87 Aligned_cols=74 Identities=16% Similarity=0.275 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 006828 181 EASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKNERDGDIEAFKKEKGLLGKRLVGLEKETDDLKLKIKV 254 (629)
Q Consensus 181 ~l~~l~~~l~ele~~~~~le~q~~~l~~e~~~L~~E~~~l~~~i~~l~~~~~~l~~el~el~~ei~~l~~~ie~ 254 (629)
+|..+.+.+..++.....+...+..+...+..+...+..+...+......+..+...+..++..++.+...+..
T Consensus 29 DLs~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~ 102 (326)
T PF04582_consen 29 DLSPIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSS 102 (326)
T ss_dssp --------------------------------------------------------------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHh
Confidence 34444444444444444444444444444444444444443333333333333333333333333333333333
No 179
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=85.45 E-value=57 Score=35.76 Aligned_cols=17 Identities=12% Similarity=0.167 Sum_probs=6.5
Q ss_pred HHHhhHHHHHHHHHHHH
Q 006828 269 QKVINDELEKEVNKLNE 285 (629)
Q Consensus 269 l~~el~ele~ela~l~e 285 (629)
....+.++..++..+..
T Consensus 380 ~e~k~~q~q~k~~k~~k 396 (493)
T KOG0804|consen 380 VERKLQQLQTKLKKCQK 396 (493)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 180
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=85.39 E-value=25 Score=30.97 Aligned_cols=96 Identities=16% Similarity=0.172 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHhhhchHH--hHHHHHHH
Q 006828 395 LRDVVFKLKASCRDQQDKSKQLVNELADYKSALDQATLERDNAWKDLDEQRKSGMDLRLKLSEMEKRFEE--KVEELAKT 472 (629)
Q Consensus 395 l~~~l~~le~~~~~le~ei~~l~~~l~~y~~~le~a~~~~~~~~~~l~~~k~~i~~Lk~eI~~LG~vN~~--AIeEyeev 472 (629)
+...+..++.++..+...+..+...+.++..++..+...-++ . .=....|+|... .-+-...+
T Consensus 8 ~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d----~-----------~vyk~VG~vlv~~~~~e~~~~l 72 (110)
T TIGR02338 8 QLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDD----T-----------PVYKSVGNLLVKTDKEEAIQEL 72 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc----c-----------hhHHHhchhhheecHHHHHHHH
Confidence 334444455555555555556655555556555554311111 1 113456766633 22333556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 006828 473 RNERETLVDLRKKMESHIGLLAEEKELMQKNLL 505 (629)
Q Consensus 473 keRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~ 505 (629)
+.|.+|+....+.|..++..++..+..++..+.
T Consensus 73 ~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 73 KEKKETLELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777766666666666666665555554443
No 181
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=85.02 E-value=1.1e+02 Score=38.00 Aligned_cols=26 Identities=12% Similarity=-0.022 Sum_probs=20.8
Q ss_pred hhhhhhhhHHHHHHHHHHHHhHHHhH
Q 006828 129 LDEEKNERENEIIALKSEVSGLMGNI 154 (629)
Q Consensus 129 vd~~~~~Rk~Ei~~L~eela~l~~~~ 154 (629)
|+.++...+.++..+...+-|+..|.
T Consensus 154 ~~~fl~a~~~eR~~il~~l~g~~~y~ 179 (1042)
T TIGR00618 154 FAQFLKAKSKEKKELLMNLFPLDQYT 179 (1042)
T ss_pred hHHHHhCCHHHHHHHHHHHhCcHHHH
Confidence 67778888888888888888777764
No 182
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=84.32 E-value=74 Score=35.43 Aligned_cols=28 Identities=25% Similarity=0.183 Sum_probs=15.6
Q ss_pred HHhhhhhhhhHHHhhhhhccchhhhhhh
Q 006828 83 LSLFGVEKSELLAELSGESDQKVSLEIE 110 (629)
Q Consensus 83 l~~~~~~~~~l~~~~~~~~~~~~~~~~~ 110 (629)
|...|+==-.|-..++++.+.+.+++=.
T Consensus 78 lElaAkiGqsllk~nk~Lq~~nesLeEq 105 (596)
T KOG4360|consen 78 LELAAKIGQSLLKANKALQEDNESLEEQ 105 (596)
T ss_pred hHHHHHHHHHHHhhhhhhhhhhhhhHhh
Confidence 3334433344555666777777766644
No 183
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=84.14 E-value=72 Score=35.17 Aligned_cols=51 Identities=14% Similarity=0.225 Sum_probs=29.1
Q ss_pred hhhHHHHHhhHhHhhhcchhhhhhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHH
Q 006828 111 KGLFCVFLMTQMKEMGEGLDEEKNERENEIIALKSEVSGLMGNIENERERLSQACREK 168 (629)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~vd~~~~~Rk~Ei~~L~eela~l~~~~~~~ke~l~~L~~~~ 168 (629)
+.+...|.+........ ....-+.-|..++..+...+...+..+.......
T Consensus 151 n~~~~~y~~~~~~~~~~-------~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~ 201 (444)
T TIGR03017 151 NAFAQAYIDTNIELKVE-------PAQKAALWFVQQIAALREDLARAQSKLSAYQQEK 201 (444)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 46666776654433322 2222345566666666666666666666666554
No 184
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=83.70 E-value=40 Score=31.93 Aligned_cols=14 Identities=21% Similarity=0.283 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHHH
Q 006828 186 KDRLIEMEGKERNL 199 (629)
Q Consensus 186 ~~~l~ele~~~~~l 199 (629)
+..+..+-...+.|
T Consensus 40 k~~v~~~I~evD~L 53 (159)
T PF05384_consen 40 KEEVSEVIEEVDKL 53 (159)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 185
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=83.23 E-value=82 Score=35.10 Aligned_cols=25 Identities=16% Similarity=0.428 Sum_probs=11.8
Q ss_pred HHHHHHH-HHccchh-HhHHHHHHHHH
Q 006828 568 AEFQAIV-NAFRNRE-KLVEDMKHRVE 592 (629)
Q Consensus 568 ~~f~~i~-~~F~~~~-~~~~~~~~~~~ 592 (629)
..+-.+. .+|-++- .+++.|-+.+-
T Consensus 442 s~L~rL~re~yls~~~f~~~e~q~~~q 468 (596)
T KOG4360|consen 442 SALQRLSRENYLSEGSFFLEEMQRKVQ 468 (596)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHH
Confidence 3333343 4444333 56666655543
No 186
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=82.55 E-value=23 Score=29.02 Aligned_cols=63 Identities=24% Similarity=0.403 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 358 DDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNEL 420 (629)
Q Consensus 358 ~~l~~~leel~~e~~~l~e~~~~~e~el~~l~~el~~l~~~l~~le~~~~~le~ei~~l~~~l 420 (629)
......|..+..+...|....-.....|..|+..+..+...+..+...+......+..+...+
T Consensus 8 ~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 8 AEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444555555555555555555566666666666666666665555555555555554443
No 187
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=81.91 E-value=3 Score=43.85 Aligned_cols=21 Identities=10% Similarity=0.123 Sum_probs=1.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 006828 301 ILELENSCSEAMDEKLEMVLE 321 (629)
Q Consensus 301 i~~le~~l~~~~~~~~~l~~e 321 (629)
+..+...+......+..+...
T Consensus 100 Vs~lS~~ls~h~ssIS~Lqs~ 120 (326)
T PF04582_consen 100 VSSLSSTLSDHSSSISDLQSS 120 (326)
T ss_dssp ------------------HHH
T ss_pred HHhhhhhhhhhhhhHHHHHHh
Confidence 333333333333333333333
No 188
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.00 E-value=1e+02 Score=34.67 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=10.0
Q ss_pred HHHHHHHHHhHHHhHHHHHHHHHHHHH
Q 006828 140 IIALKSEVSGLMGNIENERERLSQACR 166 (629)
Q Consensus 140 i~~L~eela~l~~~~~~~ke~l~~L~~ 166 (629)
...|++.+..+...+..+...+..++.
T Consensus 340 ~kdLkEkv~~lq~~l~eke~sl~dlke 366 (654)
T KOG4809|consen 340 NKDLKEKVNALQAELTEKESSLIDLKE 366 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 189
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.72 E-value=78 Score=33.19 Aligned_cols=89 Identities=18% Similarity=0.203 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHHHHHhhhhhhHhhhhHhH-HHHhhhhhHHHHHHHHHHHHHHHccchhHhHHHHHHHHHHHhhhHHhhcc
Q 006828 525 SDRALSMLKNTAAMVCQSENDIDGQQELV-VDEKKLQGETDQYAAEFQAIVNAFRNREKLVEDMKHRVELMQNSVEAQKK 603 (629)
Q Consensus 525 aiee~~~~ker~~fl~~q~~D~~ak~~l~-~i~~~~~~m~~~f~~~f~~i~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~ 603 (629)
+-.-|.++++|++=++.-.. +..+|. +--+|-.-+..+ .+..+.|..+ =..+++.+.+=...++.||.-+||
T Consensus 194 ~~~~l~Eiq~Rh~~ik~LEk---si~ELhqlFlDMa~LVe~Q-gEmvd~IE~n---V~~A~~~V~~g~~~~~kAv~~qkk 266 (297)
T KOG0810|consen 194 AKQTLAEIQERHDEIKKLEK---SIRELHQLFLDMAVLVESQ-GEMVDRIENN---VENAVDYVEQGVDHLKKAVKYQKK 266 (297)
T ss_pred hHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH-HhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577788888876665544 666666 555555433333 4555555554 345666667777778888877788
Q ss_pred cchhhhHhhHHHHHHHH
Q 006828 604 KSFWTVVSSATTIFAAA 620 (629)
Q Consensus 604 ~~~~~~~~~~~~~~~~~ 620 (629)
.--|+|++-...++.++
T Consensus 267 aRK~k~i~ii~~iii~~ 283 (297)
T KOG0810|consen 267 ARKWKIIIIIILIIIIV 283 (297)
T ss_pred hhhceeeeehHHHHHHH
Confidence 88899997544433333
No 190
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=80.64 E-value=52 Score=33.48 Aligned_cols=103 Identities=8% Similarity=0.041 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccc---hHHHHHH-HHHHHHHHhhhhhhHhh
Q 006828 473 RNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGFN---SDRALSM-LKNTAAMVCQSENDIDG 548 (629)
Q Consensus 473 keRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~lg~v---aiee~~~-~ker~~fl~~q~~D~~a 548 (629)
..+|..+..+.+.|......+...+.+....+..+..++..+..--..|.|+ .++.+.. |..-.=|+...+. ..
T Consensus 55 ~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~~d~Pf~~~eR~--~R 132 (251)
T PF11932_consen 55 LAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVELDLPFLLEERQ--ER 132 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHH--HH
Confidence 3333333333333333333333333333334444444444444444444454 3333332 2222233333333 22
Q ss_pred hhHhH-HHHhhhhhHHHHHHHHHHHHHHHc
Q 006828 549 QQELV-VDEKKLQGETDQYAAEFQAIVNAF 577 (629)
Q Consensus 549 k~~l~-~i~~~~~~m~~~f~~~f~~i~~~F 577 (629)
-..|. ++.+-+-...++|..-|++....-
T Consensus 133 l~~L~~~l~~~dv~~~ek~r~vlea~~~E~ 162 (251)
T PF11932_consen 133 LARLRAMLDDADVSLAEKFRRVLEAYQIEM 162 (251)
T ss_pred HHHHHHhhhccCCCHHHHHHHHHHHHHHHH
Confidence 35555 666666667777777777665543
No 191
>PHA01750 hypothetical protein
Probab=80.45 E-value=1.6 Score=34.21 Aligned_cols=19 Identities=37% Similarity=0.471 Sum_probs=16.5
Q ss_pred hhhhHh-hHHHHHHHHHHHH
Q 006828 606 FWTVVS-SATTIFAAASVAY 624 (629)
Q Consensus 606 ~~~~~~-~~~~~~~~~~~~~ 624 (629)
+.|+|| ++||+||-+++-|
T Consensus 7 vLtlmSTtaTtlFaIiqlYl 26 (75)
T PHA01750 7 VLTLMSTTATTLFAIIQLYL 26 (75)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 578887 8999999999877
No 192
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=80.33 E-value=1e+02 Score=34.31 Aligned_cols=22 Identities=14% Similarity=0.193 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHH
Q 006828 194 GKERNLRSEILVLQSDYGRLKK 215 (629)
Q Consensus 194 ~~~~~le~q~~~l~~e~~~L~~ 215 (629)
..+..+..++..+..+...|..
T Consensus 97 ~~~~~~~~~~~~~~~~~~rL~a 118 (457)
T TIGR01000 97 NQKQLLEQQLDNLKDQKKSLDT 118 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433
No 193
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=80.01 E-value=59 Score=31.29 Aligned_cols=39 Identities=18% Similarity=0.277 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHhhc
Q 006828 484 KKMESHIGLLAEEKELMQK-NLLEAKRNADDLRAKMESIG 522 (629)
Q Consensus 484 ~DLe~~~~~L~~e~~~l~~-~l~~~~k~i~~Lk~~I~~lg 522 (629)
-.+...++.|+.++....+ ++..++.....|+.+++.|.
T Consensus 54 ~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~ 93 (177)
T PF07798_consen 54 YLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLR 93 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555443332 23444555555555555544
No 194
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=79.91 E-value=26 Score=38.63 Aligned_cols=86 Identities=12% Similarity=0.137 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHhhhHHHHHHHHHHHHHHHHhhccc----hHHHHH
Q 006828 467 EELAKTRNERETLVDLRKKMESHIGLLAEEKE------------LMQKNLLEAKRNADDLRAKMESIGFN----SDRALS 530 (629)
Q Consensus 467 eEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~------------~l~~~l~~~~k~i~~Lk~~I~~lg~v----aiee~~ 530 (629)
.....+..+.+.|....+||..-++.|+.++. .+.+++..+...+..++.-|..+-|+ =..|+.
T Consensus 206 ~~k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE~EL~ 285 (424)
T PF03915_consen 206 SGKKKLSEESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIWESELQ 285 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 34456677788888888888888887777644 77888888888888888888888888 334999
Q ss_pred HHHHHHHHHhhhhhh-HhhhhHh
Q 006828 531 MLKNTAAMVCQSEND-IDGQQEL 552 (629)
Q Consensus 531 ~~ker~~fl~~q~~D-~~ak~~l 552 (629)
.|.+--+||.-|.+. ..-+++|
T Consensus 286 ~V~eEQqfL~~QedL~~DL~eDl 308 (424)
T PF03915_consen 286 KVCEEQQFLKLQEDLLSDLKEDL 308 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999664 4444444
No 195
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=79.75 E-value=84 Score=32.97 Aligned_cols=65 Identities=26% Similarity=0.355 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 247 DLKLKIKVIVKEKNAIEMQNSEQK-VINDELEKEVNKLNEIVLALQKEEKVLCGKILELENSCSEA 311 (629)
Q Consensus 247 ~l~~~ie~l~~el~ele~~~e~l~-~el~ele~ela~l~e~l~~l~~~~~~l~~~i~~le~~l~~~ 311 (629)
.|...+..+..+..+++..+..-+ -.+..|...+..+..........+..++....++++.+..-
T Consensus 110 ~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~E 175 (310)
T PF09755_consen 110 DLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQE 175 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHH
Confidence 344444444444444444433322 22344444444444444444444444444455555554433
No 196
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=79.65 E-value=88 Score=33.10 Aligned_cols=6 Identities=17% Similarity=0.462 Sum_probs=2.5
Q ss_pred hhHHHH
Q 006828 112 GLFCVF 117 (629)
Q Consensus 112 ~~~~~~ 117 (629)
|.+-+|
T Consensus 63 P~LElY 68 (312)
T smart00787 63 PLLELY 68 (312)
T ss_pred cHHHHH
Confidence 444444
No 197
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=79.24 E-value=41 Score=29.64 Aligned_cols=94 Identities=11% Similarity=0.141 Sum_probs=48.4
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccc-----hHHHHHHHHHHH
Q 006828 462 FEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGFN-----SDRALSMLKNTA 536 (629)
Q Consensus 462 N~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~lg~v-----aiee~~~~ker~ 536 (629)
....+..|..++..+..+..|+..|+.++.....=+..+. .+. .=..=...+||| -.+....|+.|.
T Consensus 5 ~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~----~l~----~d~~vyk~VG~vlv~~~~~e~~~~l~~r~ 76 (110)
T TIGR02338 5 VQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELE----RLP----DDTPVYKSVGNLLVKTDKEEAIQELKEKK 76 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCC----CcchhHHHhchhhheecHHHHHHHHHHHH
Confidence 3344555555555555555555555555544433211111 000 112234567776 333667888888
Q ss_pred HHHhhhhhh-HhhhhHhH-HHHhhhhhHH
Q 006828 537 AMVCQSEND-IDGQQELV-VDEKKLQGET 563 (629)
Q Consensus 537 ~fl~~q~~D-~~ak~~l~-~i~~~~~~m~ 563 (629)
+|+..-... ......|. -+.++...+.
T Consensus 77 e~ie~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 77 ETLELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888666665 55555555 5555544433
No 198
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=78.97 E-value=1.2e+02 Score=34.12 Aligned_cols=50 Identities=22% Similarity=0.216 Sum_probs=32.6
Q ss_pred HHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 006828 141 IALKSEVSGLMGNIENERERLSQACREKDLMKGELDCQVKEASRLKDRLI 190 (629)
Q Consensus 141 ~~L~eela~l~~~~~~~ke~l~~L~~~~~~l~~~l~~~~~~l~~l~~~l~ 190 (629)
..|..+++.+...........-.+-.++-.+...++....+|..+...+.
T Consensus 23 ~~lqaev~~lr~~~~~~e~~~~~l~~el~qvr~~~~~Q~seL~~l~~ev~ 72 (531)
T PF15450_consen 23 AELQAEVACLRGHKERCERATLSLLRELLQVRARVQLQDSELMQLRQEVK 72 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666777777777777666666666666666666666666666555443
No 199
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=78.95 E-value=77 Score=32.02 Aligned_cols=12 Identities=33% Similarity=0.285 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 006828 409 QQDKSKQLVNEL 420 (629)
Q Consensus 409 le~ei~~l~~~l 420 (629)
++..+..+...+
T Consensus 197 l~~~l~~Lq~~l 208 (240)
T PF12795_consen 197 LQQQLQALQNLL 208 (240)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 200
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.57 E-value=1.2e+02 Score=34.13 Aligned_cols=61 Identities=21% Similarity=0.264 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHhhccc---hHHHH----HHHHHHHHHHhhhhh
Q 006828 484 KKMESHIGLLAEEKELMQKN-LLEAKRNADDLRAKMESIGFN---SDRAL----SMLKNTAAMVCQSEN 544 (629)
Q Consensus 484 ~DLe~~~~~L~~e~~~l~~~-l~~~~k~i~~Lk~~I~~lg~v---aiee~----~~~ker~~fl~~q~~ 544 (629)
-.++..++.+...+..+.+. +..+.+++..+-.-..+-|.. |-.++ +.+-.-|-|+|.-.+
T Consensus 438 ~~~e~evq~l~~kl~llekasla~l~~evq~~t~ia~~~~~tl~~A~~~lv~~SdeLaqlyh~vc~~n~ 506 (772)
T KOG0999|consen 438 VQYEKEVQELVEKLRLLEKASLAELEKEVQKATEIAEEGTETLVNAQDELVTFSDELAQLYHHVCECNN 506 (772)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHHHHhcccccchhhhHhHhhhhHHHHHHHHHHHHHcC
Confidence 34445555555544443322 344444444333222222221 44433 445555777776543
No 201
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=78.15 E-value=73 Score=31.36 Aligned_cols=74 Identities=14% Similarity=0.175 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 135 ERENEIIALKSEVSGLMGNIENERERLSQACREKDLMKGELDCQVKEASRLKDRLIEMEGKERNLRSEILVLQS 208 (629)
Q Consensus 135 ~Rk~Ei~~L~eela~l~~~~~~~ke~l~~L~~~~~~l~~~l~~~~~~l~~l~~~l~ele~~~~~le~q~~~l~~ 208 (629)
.+..||.-|+.++.+....+..+-..+-.|...+......+......+..+.+.+..-...+...+.++.+...
T Consensus 7 qk~GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~ 80 (202)
T PF06818_consen 7 QKSGEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKN 80 (202)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhC
Confidence 45678888888888888877777666666666666555555555555555544444433333333344333333
No 202
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=78.03 E-value=54 Score=33.83 Aligned_cols=23 Identities=17% Similarity=0.033 Sum_probs=14.1
Q ss_pred hhhhHHHHHhhHhHhhhcchhhh
Q 006828 110 EKGLFCVFLMTQMKEMGEGLDEE 132 (629)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~vd~~ 132 (629)
.-|-.+||+++--.+-|.-|++.
T Consensus 210 VlPQLKVt~k~DakDWR~H~~QM 232 (384)
T KOG0972|consen 210 VLPQLKVTLKQDAKDWRLHLEQM 232 (384)
T ss_pred hhhhheehhccccHHHHHHHHHH
Confidence 34778888887555555544433
No 203
>PF13166 AAA_13: AAA domain
Probab=77.39 E-value=1.6e+02 Score=34.76 Aligned_cols=14 Identities=14% Similarity=0.164 Sum_probs=7.6
Q ss_pred HHHHHHHHhhhhhh
Q 006828 532 LKNTAAMVCQSEND 545 (629)
Q Consensus 532 ~ker~~fl~~q~~D 545 (629)
...-|.+|.....+
T Consensus 612 ~~~~Y~~l~~~l~~ 625 (712)
T PF13166_consen 612 IKSEYHYLFKELYD 625 (712)
T ss_pred CcHHHHHHHHHHHH
Confidence 44455666555555
No 204
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=77.11 E-value=1.2e+02 Score=33.27 Aligned_cols=104 Identities=13% Similarity=0.145 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHH-HHHhhhchHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHhhhHHH
Q 006828 441 LDEQRKSGMDLRLK-LSEMEKRFEEKV-EELAKTRNERETLVDLRKKMESHIGLLAEEK------------ELMQKNLLE 506 (629)
Q Consensus 441 l~~~k~~i~~Lk~e-I~~LG~vN~~AI-eEyeevkeRyefL~~Q~~DLe~~~~~L~~e~------------~~l~~~l~~ 506 (629)
+..++.++..++.- ...-|.-|-..+ .-..++..+-+.|...-+||..-++.|+.++ +.+.+++..
T Consensus 182 m~~i~~k~~~~k~~~~~~~~~s~R~y~e~~k~kL~~~Sd~lltkVDDLQD~vE~LRkDV~~RgVRp~~~qLe~v~kdi~~ 261 (426)
T smart00806 182 IKDILEKIDKFKSSSLSASGSSNRAYVESSKKKLSEDSDSLLTKVDDLQDIIEALRKDVAQRGVRPSKKQLETVQKELET 261 (426)
T ss_pred HHHHHHHHHHHHHhhhccCCCcchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 44444444444442 222233333322 2344566777778888888888888777654 478889999
Q ss_pred HHHHHHHHHHHHHhhccc----hHHHHHHHHHHHHHHhhhhh
Q 006828 507 AKRNADDLRAKMESIGFN----SDRALSMLKNTAAMVCQSEN 544 (629)
Q Consensus 507 ~~k~i~~Lk~~I~~lg~v----aiee~~~~ker~~fl~~q~~ 544 (629)
+.+.+..+..=|...-|+ =..|++.|.+--+||+-|.+
T Consensus 262 a~keL~~m~~~i~~eKP~WkKiWE~EL~~VcEEqqfL~lQed 303 (426)
T smart00806 262 ARKELKKMEEYIDIEKPIWKKIWEAELDKVCEEQQFLTLQED 303 (426)
T ss_pred HHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998 33499999999999999976
No 205
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=76.59 E-value=58 Score=34.23 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 006828 226 AFKKEKGLLGKRLVGLEKETDDLKLKI 252 (629)
Q Consensus 226 ~l~~~~~~l~~el~el~~ei~~l~~~i 252 (629)
.+..+...+...+.+++..+..++.++
T Consensus 109 ~l~yqvd~Lkd~lee~eE~~~~~~re~ 135 (302)
T PF09738_consen 109 ALMYQVDLLKDKLEELEETLAQLQREY 135 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333343333333333
No 206
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=76.46 E-value=66 Score=29.93 Aligned_cols=6 Identities=0% Similarity=0.196 Sum_probs=2.2
Q ss_pred HHHHHH
Q 006828 410 QDKSKQ 415 (629)
Q Consensus 410 e~ei~~ 415 (629)
+.++..
T Consensus 139 e~E~~k 144 (151)
T PF11559_consen 139 EREIEK 144 (151)
T ss_pred HHHHHH
Confidence 333333
No 207
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=76.19 E-value=53 Score=37.38 Aligned_cols=12 Identities=25% Similarity=0.301 Sum_probs=5.8
Q ss_pred HHHHHHHHHhhh
Q 006828 76 KAALEAELSLFG 87 (629)
Q Consensus 76 ~~~~~~~l~~~~ 87 (629)
||||++-+-+|-
T Consensus 344 RDALAAA~kAY~ 355 (652)
T COG2433 344 RDALAAAYKAYL 355 (652)
T ss_pred HHHHHHHHHHHH
Confidence 444444455554
No 208
>PRK10869 recombination and repair protein; Provisional
Probab=76.18 E-value=1.5e+02 Score=33.98 Aligned_cols=17 Identities=6% Similarity=-0.062 Sum_probs=9.3
Q ss_pred hhHHHHHHHHHHHHhHH
Q 006828 135 ERENEIIALKSEVSGLM 151 (629)
Q Consensus 135 ~Rk~Ei~~L~eela~l~ 151 (629)
-.+.....+.+.+++..
T Consensus 137 l~~~~~~~lLD~~~~~~ 153 (553)
T PRK10869 137 LKPEHQKTLLDAYANET 153 (553)
T ss_pred cCHHHHHHHHHHhcccH
Confidence 34555556666665543
No 209
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=75.71 E-value=57 Score=37.18 Aligned_cols=11 Identities=18% Similarity=0.383 Sum_probs=5.3
Q ss_pred HHHHhHHHHHH
Q 006828 65 QRQQVESLSQA 75 (629)
Q Consensus 65 ~~~~~~~~~~~ 75 (629)
=-+|=.+|.+|
T Consensus 340 ddH~RDALAAA 350 (652)
T COG2433 340 DDHERDALAAA 350 (652)
T ss_pred CchHHHHHHHH
Confidence 34444555553
No 210
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=75.27 E-value=2e+02 Score=34.93 Aligned_cols=163 Identities=15% Similarity=0.188 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHH
Q 006828 138 NEIIALKSEVSGLMGNIENERERLSQACREKDLMKGELDCQVKEASRLKDRLIEM------------EGKERNLRSEILV 205 (629)
Q Consensus 138 ~Ei~~L~eela~l~~~~~~~ke~l~~L~~~~~~l~~~l~~~~~~l~~l~~~l~el------------e~~~~~le~q~~~ 205 (629)
.++..|...-..+...+....+.+..|....+.+...+....... +....|.-+ ...+..+.....+
T Consensus 181 ~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~-~~~~~Ie~l~~k~~~v~y~~~~~ey~~~k~~~~r 259 (1072)
T KOG0979|consen 181 IELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERE-RKKSKIELLEKKKKWVEYKKHDREYNAYKQAKDR 259 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccccchHhhhHHHHHHHHHHHH
Confidence 445555555555555555555555555555555444443332211 111112111 1223333333344
Q ss_pred HHHHHhHHHHHHhhHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHHHHHHHHHHHH
Q 006828 206 LQSDYGRLKKEKNERDGDIEAFKKEKGLLGKRLVGLEKETDDLKLKIKVIVKEKNAIEMQNSEQKVINDELEKEVNKLNE 285 (629)
Q Consensus 206 l~~e~~~L~~E~~~l~~~i~~l~~~~~~l~~el~el~~ei~~l~~~ie~l~~el~ele~~~e~l~~el~ele~ela~l~e 285 (629)
++.++..+..+...+...+..+..++.++..++......+......+...-..+..+......+...+..+...-.....
T Consensus 260 ~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~ 339 (1072)
T KOG0979|consen 260 AKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQK 339 (1072)
T ss_pred HHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHH
Q 006828 286 IVLALQKEEKVLCGKI 301 (629)
Q Consensus 286 ~l~~l~~~~~~l~~~i 301 (629)
.+....+.+..+++.+
T Consensus 340 ~i~~~~k~i~~~q~el 355 (1072)
T KOG0979|consen 340 RIEKAKKMILDAQAEL 355 (1072)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 4444444444444333
No 211
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=75.14 E-value=71 Score=29.68 Aligned_cols=65 Identities=15% Similarity=0.153 Sum_probs=57.4
Q ss_pred hhccccHHHHHHHHHHHHHHHHHhhhchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 435 DNAWKDLDEQRKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKEL 499 (629)
Q Consensus 435 ~~~~~~l~~~k~~i~~Lk~eI~~LG~vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~ 499 (629)
++....+..+++.|.....++.-||..-.....||...-+-|+.....+..|...+..|-.+-+-
T Consensus 80 dP~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv~~L~eLv~eSE~ 144 (159)
T PF04949_consen 80 DPMRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLVTRLMELVSESER 144 (159)
T ss_pred cchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345678899999999999999999999999999999999999999999999999988776443
No 212
>PRK10884 SH3 domain-containing protein; Provisional
Probab=74.65 E-value=58 Score=32.25 Aligned_cols=28 Identities=11% Similarity=0.145 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 388 LHKEIGELRDVVFKLKASCRDQQDKSKQ 415 (629)
Q Consensus 388 l~~el~~l~~~l~~le~~~~~le~ei~~ 415 (629)
|..+...+..++..++.+.+.++.+++.
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~~~~~~ 164 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAANLQLDD 164 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 213
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=73.87 E-value=1.8e+02 Score=33.83 Aligned_cols=19 Identities=16% Similarity=0.265 Sum_probs=9.7
Q ss_pred HHHHHHHHhhhH-Hhhcccc
Q 006828 587 MKHRVELMQNSV-EAQKKKS 605 (629)
Q Consensus 587 ~~~~~~~~~~~~-~~~~~~~ 605 (629)
-+.+...|..-+ +..+.++
T Consensus 637 ~~~e~~rl~~rlqelerdkN 656 (739)
T PF07111_consen 637 RKEEGQRLTQRLQELERDKN 656 (739)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 344455555555 5555333
No 214
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=73.18 E-value=57 Score=28.41 Aligned_cols=55 Identities=18% Similarity=0.238 Sum_probs=34.1
Q ss_pred hhHhHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhHHHhhhhhccchhhhhhhhhhHHHHHhh
Q 006828 59 VHRSHEQRQQVESLSQAKAALEAELSLFGVEKSELLAELSGESDQKVSLEIEKGLFCVFLMT 120 (629)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (629)
+.+-..=++++..+.+.+..|+..+.+. .....+|..+-+...-...+.+ +|++.
T Consensus 5 ~~~~q~l~~~~~~l~~~~~~l~~~~~E~----~~v~~EL~~l~~d~~vy~~VG~---vfv~~ 59 (105)
T cd00632 5 LAQLQQLQQQLQAYIVQRQKVEAQLNEN----KKALEELEKLADDAEVYKLVGN---VLVKQ 59 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHcCCCcchHHHHhhh---HHhhc
Confidence 3444555778888888888888887655 3555566666555554455543 55443
No 215
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=73.01 E-value=1.2e+02 Score=33.07 Aligned_cols=61 Identities=15% Similarity=-0.025 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHHHHhhhhhh-Hhhh----hHhH-HHHhhhhhHHHHHHHHHHHHHHHcc---chhHhHH
Q 006828 525 SDRALSMLKNTAAMVCQSEND-IDGQ----QELV-VDEKKLQGETDQYAAEFQAIVNAFR---NREKLVE 585 (629)
Q Consensus 525 aiee~~~~ker~~fl~~q~~D-~~ak----~~l~-~i~~~~~~m~~~f~~~f~~i~~~F~---~~~~~~~ 585 (629)
--+.+.+.+-||+-|..|.+| ++.- ..|. -+..|...|.=++.+-|..|.+.+. +|=..+|
T Consensus 249 ~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 249 ILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 344667778888888888888 5542 2344 5556666666666666666665544 5555555
No 216
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=72.55 E-value=1.3e+02 Score=31.68 Aligned_cols=29 Identities=0% Similarity=-0.204 Sum_probs=12.6
Q ss_pred HHHhhhchHHhHHHHHHHHHHHHHHHHHH
Q 006828 455 LSEMEKRFEEKVEELAKTRNERETLVDLR 483 (629)
Q Consensus 455 I~~LG~vN~~AIeEyeevkeRyefL~~Q~ 483 (629)
-+.|+..|++.+-=|..-..|.-|...+.
T Consensus 289 fDsLreEnlgmlfVYs~k~qRllFAN~~f 317 (401)
T PF06785_consen 289 FDSLREENLGMLFVYSPKSQRLLFANSQF 317 (401)
T ss_pred HhhhcccccceEEEecchhhHHHHhHHHH
Confidence 34444444444444444444444444443
No 217
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.32 E-value=1.8e+02 Score=32.53 Aligned_cols=44 Identities=11% Similarity=0.149 Sum_probs=26.9
Q ss_pred HHHHHHHHHhhhhhhHhhhhHhH-HHHhhhhhHHHHHHHHHHHHHHHc
Q 006828 531 MLKNTAAMVCQSENDIDGQQELV-VDEKKLQGETDQYAAEFQAIVNAF 577 (629)
Q Consensus 531 ~~ker~~fl~~q~~D~~ak~~l~-~i~~~~~~m~~~f~~~f~~i~~~F 577 (629)
.+.+--++|.++.+ +...|. |++.+.+.|+..-.+.......+|
T Consensus 463 ~~~e~~e~lt~~~e---~l~~Lv~Ilk~d~edi~~~l~E~~~~~~~~~ 507 (508)
T KOG3091|consen 463 KLIEMKEHLTQEQE---ALTKLVNILKGDQEDIKHQLIEDLEICRKSL 507 (508)
T ss_pred hhHHHHHHHHHHHH---HHHHHHHHHHhHHHHHHHHHHhhHHHHhhhc
Confidence 33444455555553 666677 777777777666666666666555
No 218
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=71.03 E-value=1.2e+02 Score=30.64 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=13.4
Q ss_pred hhhhhh-hhhHHHH---HhhHhHhhhcchhhh
Q 006828 105 VSLEIE-KGLFCVF---LMTQMKEMGEGLDEE 132 (629)
Q Consensus 105 ~~~~~~-~~~~~~~---~~~~~~~~~~~vd~~ 132 (629)
++...+ ...|++. .+.++..|+-.+-.+
T Consensus 8 fss~~eE~~ywk~l~~~ykq~f~~~reEl~EF 39 (333)
T KOG1853|consen 8 FSSDLEEDQYWKLLHHEYKQHFLQMREELNEF 39 (333)
T ss_pred ccchhhHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 333333 4566654 344555555544333
No 219
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=69.28 E-value=1.8e+02 Score=33.31 Aligned_cols=119 Identities=14% Similarity=0.167 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHhhhchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccc
Q 006828 445 RKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGFN 524 (629)
Q Consensus 445 k~~i~~Lk~eI~~LG~vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~lg~v 524 (629)
+..+..+++.+.+|...++....++....++++.|..+.......+.++..++. .....++..+++|...
T Consensus 190 ~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~----------~~~~~~~~~~~~lk~a 259 (555)
T TIGR03545 190 KQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQ----------NDKKQLKADLAELKKA 259 (555)
T ss_pred chhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HhHHHHHHHHHHHHhc
Confidence 455666677777777778888889999999999999998888888888877544 3445566677777776
Q ss_pred hHHHHHHHHHHHHHHhhhhhhHhhhhHhH-HHHhhhhhHHHHHHHHHHHHHHHcc
Q 006828 525 SDRALSMLKNTAAMVCQSENDIDGQQELV-VDEKKLQGETDQYAAEFQAIVNAFR 578 (629)
Q Consensus 525 aiee~~~~ker~~fl~~q~~D~~ak~~l~-~i~~~~~~m~~~f~~~f~~i~~~F~ 578 (629)
.-..|..+.+-|.|-.. .+++-.. ++.+--..-...|..-|+.+.-++.
T Consensus 260 p~~D~~~L~~~~~~~~~-----~~~~~~~~L~g~~i~~~~~~~~~~y~~~~p~i~ 309 (555)
T TIGR03545 260 PQNDLKRLENKYAIKSG-----DLKNFAVDLFGPEIRKYLQKFLKYYDQAEPLLN 309 (555)
T ss_pred cHhHHHHHHHHhCCCcc-----cHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhhc
Confidence 77799999999986222 2444444 6666666666777777777777776
No 220
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=68.57 E-value=1.2e+02 Score=29.55 Aligned_cols=29 Identities=17% Similarity=0.253 Sum_probs=16.7
Q ss_pred hhhhHHHhhhhhccchhhhhhh-----------hhhHHHH
Q 006828 89 EKSELLAELSGESDQKVSLEIE-----------KGLFCVF 117 (629)
Q Consensus 89 ~~~~l~~~~~~~~~~~~~~~~~-----------~~~~~~~ 117 (629)
.++.||-=|.+...-.+.+.-. +.||+||
T Consensus 39 ~ltElRTtyNGsYGASLlF~~~eltYYVALfq~k~fWRVi 78 (192)
T PF11180_consen 39 QLTELRTTYNGSYGASLLFYPKELTYYVALFQQKAFWRVI 78 (192)
T ss_pred chhhhhhhccCCccceeeecCCcceeeeeeeecCceeEee
Confidence 4555555555555544444333 3899998
No 221
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=68.55 E-value=1.9e+02 Score=31.71 Aligned_cols=22 Identities=9% Similarity=0.072 Sum_probs=11.8
Q ss_pred cccccccchhcccCCCCCCcHH
Q 006828 25 QNLTQGKTVALTHRNSMEDPSE 46 (629)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~ 46 (629)
+-+.+|+.++-+-.++|.-++.
T Consensus 130 v~~~lesav~se~gs~~~~~dh 151 (502)
T KOG0982|consen 130 VLLSLESAVGSESGSRLKREDH 151 (502)
T ss_pred ccccccccccchhhccccccch
Confidence 3344555555555666655443
No 222
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=68.05 E-value=96 Score=28.22 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=15.2
Q ss_pred HHHHHHHHHhHHHhHHHHHHHHHHHHH
Q 006828 140 IIALKSEVSGLMGNIENERERLSQACR 166 (629)
Q Consensus 140 i~~L~eela~l~~~~~~~ke~l~~L~~ 166 (629)
.+.|.+-++.+.+.+...-+.+...++
T Consensus 38 rr~m~~A~~~v~kql~~vs~~l~~tKk 64 (126)
T PF07889_consen 38 RRSMSDAVASVSKQLEQVSESLSSTKK 64 (126)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666655555444433
No 223
>PRK09343 prefoldin subunit beta; Provisional
Probab=68.05 E-value=92 Score=28.01 Aligned_cols=95 Identities=20% Similarity=0.195 Sum_probs=51.9
Q ss_pred HhhHhHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhHHHhhhhhccchhhhhhhhhhHHHHHhhHhHhhhcchhhhhhhhH
Q 006828 58 LVHRSHEQRQQVESLSQAKAALEAELSLFGVEKSELLAELSGESDQKVSLEIEKGLFCVFLMTQMKEMGEGLDEEKNERE 137 (629)
Q Consensus 58 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~Rk 137 (629)
++.+-..-++++..+...+..|+..+.+.- .-..||..+.+.+.-...+. .||++. +.+..++.=.
T Consensus 12 ~~~~~q~lq~~l~~~~~q~~~le~q~~e~~----~~~~EL~~L~~d~~VYk~VG---~vlv~q-------d~~e~~~~l~ 77 (121)
T PRK09343 12 QLAQLQQLQQQLERLLQQKSQIDLELREIN----KALEELEKLPDDTPIYKIVG---NLLVKV-------DKTKVEKELK 77 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHcCCCcchhHHHhh---HHHhhc-------cHHHHHHHHH
Confidence 455566667888888888888888886643 44556666666554444443 456554 3444433333
Q ss_pred HHHHHHHHHHHhHHHhHHHHHHHHHHHHH
Q 006828 138 NEIIALKSEVSGLMGNIENERERLSQACR 166 (629)
Q Consensus 138 ~Ei~~L~eela~l~~~~~~~ke~l~~L~~ 166 (629)
..++.+...+..+......++..+.++..
T Consensus 78 ~r~E~ie~~ik~lekq~~~l~~~l~e~q~ 106 (121)
T PRK09343 78 ERKELLELRSRTLEKQEKKLREKLKELQA 106 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444333333
No 224
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=66.78 E-value=55 Score=31.10 Aligned_cols=19 Identities=11% Similarity=-0.081 Sum_probs=12.6
Q ss_pred chHHHHHHHHHHHHHHhhh
Q 006828 524 NSDRALSMLKNTAAMVCQS 542 (629)
Q Consensus 524 vaiee~~~~ker~~fl~~q 542 (629)
|+.++...+...|.++...
T Consensus 142 vs~ee~~~~~~~~~~~~k~ 160 (169)
T PF07106_consen 142 VSPEEKEKLEKEYKKWRKE 160 (169)
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 4667777777777666554
No 225
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=66.65 E-value=75 Score=26.44 Aligned_cols=14 Identities=21% Similarity=0.169 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHhh
Q 006828 446 KSGMDLRLKLSEME 459 (629)
Q Consensus 446 ~~i~~Lk~eI~~LG 459 (629)
.+|..|+.++...|
T Consensus 64 eEI~rLr~eLe~r~ 77 (79)
T PF08581_consen 64 EEIARLRRELEQRG 77 (79)
T ss_dssp HHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHhhC
Confidence 34445555544433
No 226
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=66.65 E-value=2e+02 Score=31.34 Aligned_cols=19 Identities=11% Similarity=0.253 Sum_probs=8.7
Q ss_pred HHhhHhHhhhcchhhhhhh
Q 006828 117 FLMTQMKEMGEGLDEEKNE 135 (629)
Q Consensus 117 ~~~~~~~~~~~~vd~~~~~ 135 (629)
|.-+.++--|++|-.=|.+
T Consensus 48 F~~~~vda~~vDFSd~i~~ 66 (388)
T PF04912_consen 48 FKGARVDARGVDFSDRISK 66 (388)
T ss_pred hCcCcCCCCCCCchhhccc
Confidence 4444444555555443333
No 227
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=65.35 E-value=2.8e+02 Score=32.52 Aligned_cols=37 Identities=24% Similarity=0.360 Sum_probs=14.8
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 381 QDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLV 417 (629)
Q Consensus 381 ~e~el~~l~~el~~l~~~l~~le~~~~~le~ei~~l~ 417 (629)
+..++..+.+++..+...-.++...+.++..+++++.
T Consensus 221 L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 221 LEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3333333334444443333444444444444444433
No 228
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=65.01 E-value=99 Score=27.27 Aligned_cols=93 Identities=16% Similarity=0.221 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHhhhhhccchhhhhhhhhhHHHHHhhHhHhhhcchhhhhhhhHHHHHHHHHHHHh
Q 006828 70 ESLSQAKAALEAELSLFGVEKSELLAELSGESDQKVSLEIEKGLFCVFLMTQMKEMGEGLDEEKNERENEIIALKSEVSG 149 (629)
Q Consensus 70 ~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~Rk~Ei~~L~eela~ 149 (629)
+--..+|.-||+.|.+ ......||..+-..+.-...+.| |.++--.-+-|-||++=|.-=..||..+...+.+
T Consensus 22 ~k~~~~rqkle~qL~E----nk~V~~Eldlle~d~~VYKliGp---vLvkqel~EAr~nV~kRlefI~~Eikr~e~~i~d 94 (120)
T KOG3478|consen 22 EKYVESRQKLETQLQE----NKIVLEELDLLEEDSNVYKLIGP---VLVKQELEEARTNVGKRLEFISKEIKRLENQIRD 94 (120)
T ss_pred HHHHHHHHHHHHHHhh----hHHHHHHHHHhcccchHHHHhcc---hhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344567778888864 45677888888888877777764 4567777788899998888888899999999998
Q ss_pred HHHhHHHHHHHHHHHHHHHH
Q 006828 150 LMGNIENERERLSQACREKD 169 (629)
Q Consensus 150 l~~~~~~~ke~l~~L~~~~~ 169 (629)
+.......+..+-++....+
T Consensus 95 ~q~e~~k~R~~v~k~Q~~~q 114 (120)
T KOG3478|consen 95 SQEEFEKQREAVIKLQQAAQ 114 (120)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 88888888887777766543
No 229
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=62.58 E-value=3.9e+02 Score=33.31 Aligned_cols=37 Identities=11% Similarity=0.101 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 006828 475 ERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNA 511 (629)
Q Consensus 475 RyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i 511 (629)
.|+............+..+...+..+...+......+
T Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 747 (1047)
T PRK10246 711 EETVALDNWRQVHEQCLSLHSQLQTLQQQDVLEAQRL 747 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444443333333
No 230
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=62.49 E-value=2.1e+02 Score=30.13 Aligned_cols=71 Identities=15% Similarity=0.223 Sum_probs=30.7
Q ss_pred hHhHhhhcchhhhhhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 006828 120 TQMKEMGEGLDEEKNERENEIIALKSEVSGLMGNIENERERLSQACREKDLMKGELDCQVKEASRLKDRLIEMEGKE 196 (629)
Q Consensus 120 ~~~~~~~~~vd~~~~~Rk~Ei~~L~eela~l~~~~~~~ke~l~~L~~~~~~l~~~l~~~~~~l~~l~~~l~ele~~~ 196 (629)
....+.||+.-++..+-+.| -++.+...-.+-++....+.-+++.+...+...+.....+.+.-.++...+
T Consensus 76 sKLeelCRelQr~nk~~keE------~~~q~k~eEerRkea~~~fqvtL~diqktla~~~~~n~klre~NieL~eKl 146 (391)
T KOG1850|consen 76 SKLEELCRELQRANKQTKEE------ACAQMKKEEERRKEAVEQFQVTLKDIQKTLAEGRSKNDKLREDNIELSEKL 146 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhhHHHHHHHHHHHHHH
Confidence 34445555554444333222 234444444444455555555555444444443333333333333333333
No 231
>PRK02119 hypothetical protein; Provisional
Probab=62.41 E-value=48 Score=27.07 Aligned_cols=52 Identities=12% Similarity=-0.068 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhcc
Q 006828 472 TRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGF 523 (629)
Q Consensus 472 vkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~lg~ 523 (629)
+.+|...|.....-.+..+..|..-+..-+..+..+.+.+..|..++..+++
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~~ 58 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQP 58 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3445555544444445555555555555555566666666666666666653
No 232
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=62.28 E-value=2.4e+02 Score=30.85 Aligned_cols=17 Identities=18% Similarity=0.264 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006828 478 TLVDLRKKMESHIGLLA 494 (629)
Q Consensus 478 fL~~Q~~DLe~~~~~L~ 494 (629)
.|..|-++|..++-++.
T Consensus 421 ~l~eqneelngtilTls 437 (502)
T KOG0982|consen 421 ILSEQNEELNGTILTLS 437 (502)
T ss_pred hhhhhhhhhhhhhhhHH
Confidence 34445555555554443
No 233
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=61.57 E-value=3e+02 Score=31.58 Aligned_cols=84 Identities=18% Similarity=0.238 Sum_probs=67.8
Q ss_pred cHHHHHHHHHHHHHHHHHhhhchHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhHHHHHHHH-----
Q 006828 440 DLDEQRKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVDL---RKKMESHIGLLAEEKELMQKNLLEAKRNA----- 511 (629)
Q Consensus 440 ~l~~~k~~i~~Lk~eI~~LG~vN~~AIeEyeevkeRyefL~~Q---~~DLe~~~~~L~~e~~~l~~~l~~~~k~i----- 511 (629)
.++.+..++..|+.-....|+-..+.++-+.++++++..|... ...|+.++..+..+....-..+...++..
T Consensus 298 ~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~A~~L~ 377 (557)
T COG0497 298 RLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLDNSEESLEALEKEVKKLKAELLEAAEALSAIRKKAAKELE 377 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999999999999999999988766 45677777777777776666666555554
Q ss_pred HHHHHHHHhhcc
Q 006828 512 DDLRAKMESIGF 523 (629)
Q Consensus 512 ~~Lk~~I~~lg~ 523 (629)
+.+..++..|+.
T Consensus 378 ~~v~~eL~~L~M 389 (557)
T COG0497 378 KEVTAELKALAM 389 (557)
T ss_pred HHHHHHHHhcCC
Confidence 467777777876
No 234
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=61.47 E-value=2.5e+02 Score=30.68 Aligned_cols=52 Identities=19% Similarity=0.154 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 006828 242 EKETDDLKLKIKVIVKEKNAIEMQNSEQKVINDELEKEVNKLNEIVLALQKE 293 (629)
Q Consensus 242 ~~ei~~l~~~ie~l~~el~ele~~~e~l~~el~ele~ela~l~e~l~~l~~~ 293 (629)
+..+.+.......+..+...+......+...+...+..++.|+++...+..+
T Consensus 19 ~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~ 70 (459)
T KOG0288|consen 19 NTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEE 70 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333344444444444444444444444444444333
No 235
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=60.91 E-value=3.2e+02 Score=32.53 Aligned_cols=12 Identities=0% Similarity=-0.003 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHc
Q 006828 566 YAAEFQAIVNAF 577 (629)
Q Consensus 566 f~~~f~~i~~~F 577 (629)
|..-|+.++..|
T Consensus 630 ~~~ll~~l~~~y 641 (726)
T PRK09841 630 MRQLLEWANDHY 641 (726)
T ss_pred HHHHHHHHHhcC
Confidence 333333333333
No 236
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=60.60 E-value=3.7e+02 Score=32.33 Aligned_cols=22 Identities=9% Similarity=0.049 Sum_probs=14.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHcc
Q 006828 557 KKLQGETDQYAAEFQAIVNAFR 578 (629)
Q Consensus 557 ~~~~~m~~~f~~~f~~i~~~F~ 578 (629)
-.+..-..++..+...+...|.
T Consensus 713 ~~d~~~l~~~lq~~~~~~eel~ 734 (980)
T KOG0980|consen 713 RGDEMLLRQYLQTLNQLGEELL 734 (980)
T ss_pred hhHHHHHHHHHHHHHHHhHHhc
Confidence 3344456677777777777774
No 237
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=60.35 E-value=20 Score=38.82 Aligned_cols=46 Identities=17% Similarity=0.296 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhcc
Q 006828 478 TLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGF 523 (629)
Q Consensus 478 fL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~lg~ 523 (629)
.|....++++++++.++..+..+...+....+++..+...+..|-+
T Consensus 141 ~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEn 186 (370)
T PF02994_consen 141 SLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLEN 186 (370)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666777777777777666666666666666666666666544
No 238
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=60.15 E-value=2.8e+02 Score=31.00 Aligned_cols=136 Identities=16% Similarity=0.170 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHhhhchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccc
Q 006828 445 RKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGFN 524 (629)
Q Consensus 445 k~~i~~Lk~eI~~LG~vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~lg~v 524 (629)
+.+++.+-..+.+|-.--..+.--+++.+.|+-.|....=.+--.+.-|+.---.|..+-.+++.+++.|-.++..=
T Consensus 354 r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr~~G~~L~~~EE~Lr~Kldtll~~ln~P--- 430 (508)
T KOG3091|consen 354 RIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQEILRKRGYALTPDEEELRAKLDTLLAQLNAP--- 430 (508)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccHHHHHHHHHHHHHHhcCh---
Confidence 33344444444444444444555555555555555444444444444433332234444455555555555444432
Q ss_pred hHHHHHHHHHHHHHHhhhhh---h-HhhhhHhHHHHhhhhhHHHHHHHHHHHHHHHccchhHhHHHHH
Q 006828 525 SDRALSMLKNTAAMVCQSEN---D-IDGQQELVVDEKKLQGETDQYAAEFQAIVNAFRNREKLVEDMK 588 (629)
Q Consensus 525 aiee~~~~ker~~fl~~q~~---D-~~ak~~l~~i~~~~~~m~~~f~~~f~~i~~~F~~~~~~~~~~~ 588 (629)
..++-|.+-|..+.. + ........+..++..+|++-+...-+.|..--.==..+.++|+
T Consensus 431 -----nq~k~Rl~~L~e~~r~q~~~~~~~~~~~iD~~~~~e~~e~lt~~~e~l~~Lv~Ilk~d~edi~ 493 (508)
T KOG3091|consen 431 -----NQLKARLDELYEILRMQNSQLKLQESYWIDFDKLIEMKEHLTQEQEALTKLVNILKGDQEDIK 493 (508)
T ss_pred -----HHHHHHHHHHHHHHHhhcchhccccceeechhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 445555544444422 2 3333333377888888988888888777654443344445554
No 239
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=60.11 E-value=2.1e+02 Score=29.38 Aligned_cols=29 Identities=24% Similarity=0.352 Sum_probs=14.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 235 GKRLVGLEKETDDLKLKIKVIVKEKNAIE 263 (629)
Q Consensus 235 ~~el~el~~ei~~l~~~ie~l~~el~ele 263 (629)
+..+..|..+++.++..|.....++.-+.
T Consensus 80 e~~l~~Lq~ql~~l~akI~k~~~el~~L~ 108 (258)
T PF15397_consen 80 ESKLSKLQQQLEQLDAKIQKTQEELNFLS 108 (258)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555444444
No 240
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=60.02 E-value=38 Score=35.52 Aligned_cols=53 Identities=26% Similarity=0.339 Sum_probs=32.2
Q ss_pred HHHHHHHHHHccchhHhHHHHHHHHHHHhhhH-Hhhcccchhh----hHhhHHHHHHHH
Q 006828 567 AAEFQAIVNAFRNREKLVEDMKHRVELMQNSV-EAQKKKSFWT----VVSSATTIFAAA 620 (629)
Q Consensus 567 ~~~f~~i~~~F~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~ 620 (629)
...++.++.....+.+.+++..++++...... +|+|. |+|. |++.+-+|++++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~e~~~~~~e~~~kaeeaqK~-Gi~~kIf~wi~~avsvv~~~ 75 (306)
T PF04888_consen 18 KSKKEQIERASEAQEKKAEEKAEEIEEAQEKAEEAQKA-GIFSKIFGWIGTAVSVVAGA 75 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHH
Confidence 33444444444455566666666666666666 78887 8775 666555555555
No 241
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=58.46 E-value=3.7e+02 Score=31.70 Aligned_cols=97 Identities=18% Similarity=0.230 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHhhhch-HHhHHHHHHH
Q 006828 394 ELRDVVFKLKASCRDQQDKSKQLVNELADYKSALDQATLERDNAWKDLDEQRKSGMDLRLKLSEMEKRF-EEKVEELAKT 472 (629)
Q Consensus 394 ~l~~~l~~le~~~~~le~ei~~l~~~l~~y~~~le~a~~~~~~~~~~l~~~k~~i~~Lk~eI~~LG~vN-~~AIeEyeev 472 (629)
.++..+.+.+.+..+...++.+...++.+|..-+..+. .+.+.-..-+..|..++.++|.-- .+|++ +.
T Consensus 988 kLr~rL~q~eaeR~~~reqlrQ~Q~Q~sqYnqvl~~Lk-------sS~~~K~~~l~El~qEl~d~GV~AD~gAee---RA 1057 (1480)
T COG3096 988 KLRQRLEQAEAERTRAREQLRQHQAQLSQYNQVLASLK-------SSYDTKKELLNELQQELQDIGVRADSGAEE---RA 1057 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhhhHHHHHHHHHHHHHHHhCCCcCcchHH---HH
Confidence 34556666677777777777777777778877666553 234444556778889999998543 45543 45
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 473 RNERETLVDLRKKMESHIGLLAEEKELM 500 (629)
Q Consensus 473 keRyefL~~Q~~DLe~~~~~L~~e~~~l 500 (629)
+.|.+.|..+..+-..+.+.++..+...
T Consensus 1058 ~~RRDELh~~Lst~RsRr~~~EkqlT~~ 1085 (1480)
T COG3096 1058 RIRRDELHAQLSTNRSRRNQLEKQLTFC 1085 (1480)
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHHHH
Confidence 6677777776554444444444443333
No 242
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=57.98 E-value=1.1e+02 Score=28.95 Aligned_cols=18 Identities=6% Similarity=0.414 Sum_probs=12.3
Q ss_pred chhHhHHHHHHHHHHHhhh
Q 006828 579 NREKLVEDMKHRVELMQNS 597 (629)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~ 597 (629)
+.++ +-++.-+++.|+.|
T Consensus 114 ~~dg-~~Gldeqi~~lkes 131 (155)
T PF06810_consen 114 DDDG-LKGLDEQIKALKES 131 (155)
T ss_pred CCCc-cccHHHHHHHHHhc
Confidence 5555 77777777777655
No 243
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=57.93 E-value=2.6e+02 Score=29.69 Aligned_cols=78 Identities=13% Similarity=0.252 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 186 KDRLIEMEGKERNLRSEILVLQSDYGRLKKEKNERDGDIEAFKKEKGLLGKRLVGLEKETDDLKLKIKVIVKEKNAIE 263 (629)
Q Consensus 186 ~~~l~ele~~~~~le~q~~~l~~e~~~L~~E~~~l~~~i~~l~~~~~~l~~el~el~~ei~~l~~~ie~l~~el~ele 263 (629)
..+..++..+.+.|..++-....-+-..+.+...++.-+..+..+..-++-++..+..+..+...+-..+..++.+..
T Consensus 98 q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~l 175 (401)
T PF06785_consen 98 QQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEAL 175 (401)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHH
Confidence 334444444455555555444443333344444444444444444444444444444444444444444444444433
No 244
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=57.62 E-value=2.4e+02 Score=29.30 Aligned_cols=16 Identities=31% Similarity=0.389 Sum_probs=6.0
Q ss_pred HHHHHhhhhhhHHHhh
Q 006828 45 SEQIKRLKSLNDLLVH 60 (629)
Q Consensus 45 ~~~~~~l~~~~~~l~~ 60 (629)
.++|=-.++|++.|+|
T Consensus 55 geqf~mftsLaawLik 70 (384)
T KOG0972|consen 55 GEQFYMFTSLAAWLIK 70 (384)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 245
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=57.44 E-value=1.3e+02 Score=26.12 Aligned_cols=81 Identities=20% Similarity=0.258 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHhhhchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHH
Q 006828 442 DEQRKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQK---NLLEAKRNADDLRAKM 518 (629)
Q Consensus 442 ~~~k~~i~~Lk~eI~~LG~vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~---~l~~~~k~i~~Lk~~I 518 (629)
.-++.....++..+..=| +....++++-.+...+-.+..+.+.|..+...+..++..... +...+..++..++.+|
T Consensus 5 k~ir~n~e~v~~~l~~R~-~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i 83 (108)
T PF02403_consen 5 KLIRENPEEVRENLKKRG-GDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEI 83 (108)
T ss_dssp HHHHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHcC-CCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHH
Confidence 344445555555555555 566677777777777777777777777777777776665554 4566666777777777
Q ss_pred Hhhcc
Q 006828 519 ESIGF 523 (629)
Q Consensus 519 ~~lg~ 523 (629)
..+..
T Consensus 84 ~~le~ 88 (108)
T PF02403_consen 84 KELEE 88 (108)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
No 246
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=57.38 E-value=47 Score=24.45 Aligned_cols=31 Identities=10% Similarity=0.104 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 468 ELAKTRNERETLVDLRKKMESHIGLLAEEKE 498 (629)
Q Consensus 468 EyeevkeRyefL~~Q~~DLe~~~~~L~~e~~ 498 (629)
+|+.++..|+.|....+-|......|..++.
T Consensus 6 Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~ 36 (45)
T PF02183_consen 6 DYDALKASYDSLKAEYDSLKKENEKLRAEVQ 36 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444333
No 247
>PRK04406 hypothetical protein; Provisional
Probab=57.27 E-value=87 Score=25.75 Aligned_cols=52 Identities=12% Similarity=0.006 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhcc
Q 006828 472 TRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGF 523 (629)
Q Consensus 472 vkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~lg~ 523 (629)
+..|+..|..+..-.+..+..|..-+..-+..+..+.+.+..|..++.++++
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~~ 60 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMDS 60 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3445555555555555555555555555566666666777777777766654
No 248
>COG5283 Phage-related tail protein [Function unknown]
Probab=56.77 E-value=4.8e+02 Score=32.52 Aligned_cols=34 Identities=15% Similarity=0.190 Sum_probs=21.2
Q ss_pred HccchhHhHHHHHHHHHHHhhhH-Hhhc--ccchhhh
Q 006828 576 AFRNREKLVEDMKHRVELMQNSV-EAQK--KKSFWTV 609 (629)
Q Consensus 576 ~F~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~ 609 (629)
....+..-+-.|..+.+.|..++ ..|+ +-++-.+
T Consensus 276 q~k~~rdn~~k~t~q~~~m~~a~~~ta~~~kd~~~~l 312 (1213)
T COG5283 276 QVKGARDNLGKVTSQGEEMSDAIQETAEHIKDSGREL 312 (1213)
T ss_pred HhhhhhcchHHHHHHHHHHHHHHHHHHHHcchhhhhH
Confidence 33444555666777888888888 7766 4444444
No 249
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=56.49 E-value=2.1e+02 Score=28.30 Aligned_cols=55 Identities=24% Similarity=0.366 Sum_probs=42.6
Q ss_pred CCCCCCcHHHHHhhhhhhHHHhhHhHHHHHHhHHHHHHHHHHHHHHHhhhhhhhh
Q 006828 38 RNSMEDPSEQIKRLKSLNDLLVHRSHEQRQQVESLSQAKAALEAELSLFGVEKSE 92 (629)
Q Consensus 38 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 92 (629)
.++|.||++.|...+.--..|=..-..-...++.+...+..+..-+..+|.-...
T Consensus 16 ~~~~~e~D~~F~~~~~~~~~le~~Lk~l~~~~~~l~~~~~~l~~~~~e~~~~~~~ 70 (236)
T PF09325_consen 16 SPKMKEPDEWFEEIKDYVDKLEEQLKKLYKSLERLVKRRQELASALAEFGSSFSQ 70 (236)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999888887776666666777788888888888877777744443
No 250
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=55.84 E-value=4.7e+02 Score=32.16 Aligned_cols=37 Identities=14% Similarity=0.108 Sum_probs=15.7
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHccchhHhHHHHHHH
Q 006828 554 VDEKKLQGETDQYAAEFQAIVNAFRNREKLVEDMKHR 590 (629)
Q Consensus 554 ~i~~~~~~m~~~f~~~f~~i~~~F~~~~~~~~~~~~~ 590 (629)
+|+.-...|...-...|+.....+.-.+..++..|..
T Consensus 838 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~ 874 (1041)
T KOG0243|consen 838 AIEEKQQAMKSVLKELLENAESQVDECKEAIESLKSL 874 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444433
No 251
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=55.09 E-value=48 Score=24.42 Aligned_cols=38 Identities=16% Similarity=0.255 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 006828 473 RNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRN 510 (629)
Q Consensus 473 keRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~ 510 (629)
...|+.|...++.|.....+|..|.+.+...+..+...
T Consensus 4 E~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 4 ERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677777777777777777777777666665554443
No 252
>COG5343 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.05 E-value=9.6 Score=37.54 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=21.5
Q ss_pred ccchhhhHhhHHHHHHHHHHHHHhh
Q 006828 603 KKSFWTVVSSATTIFAAASVAYIAR 627 (629)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (629)
+.+||.|.+++|+++|++.++|+..
T Consensus 98 s~~fWR~a~~ataavAvlal~~a~~ 122 (240)
T COG5343 98 SLNFWRSAIAATAAVAVLALALALT 122 (240)
T ss_pred ccchHHHHHHHHHHHHHHHHHHccc
Confidence 5689999999999999998888764
No 253
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=54.76 E-value=1.3e+02 Score=26.09 Aligned_cols=88 Identities=15% Similarity=0.165 Sum_probs=49.6
Q ss_pred HHHHhhhhhhhhHHHhhhhhccchhhhhhhhhhHHHHHhhHhHhhhcchhhhhhhhHHHHHHHHHHHHhHHHhHHHHHHH
Q 006828 81 AELSLFGVEKSELLAELSGESDQKVSLEIEKGLFCVFLMTQMKEMGEGLDEEKNERENEIIALKSEVSGLMGNIENERER 160 (629)
Q Consensus 81 ~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~Rk~Ei~~L~eela~l~~~~~~~ke~ 160 (629)
..+......+..|...+.-...-.-.+..-.|--.+|...=+..+.+++|+.+..=...+..+...+..+...+..+...
T Consensus 13 ~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~ 92 (105)
T cd00632 13 QQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIKRLERQEEDLQEK 92 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555555556666555554444444444445666676666677777777776655555555555555555555544444
Q ss_pred HHHHHHHH
Q 006828 161 LSQACREK 168 (629)
Q Consensus 161 l~~L~~~~ 168 (629)
+..++..+
T Consensus 93 ~~elk~~l 100 (105)
T cd00632 93 LKELQEKI 100 (105)
T ss_pred HHHHHHHH
Confidence 44444443
No 254
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=53.83 E-value=2.6e+02 Score=28.46 Aligned_cols=9 Identities=0% Similarity=-0.175 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 006828 285 EIVLALQKE 293 (629)
Q Consensus 285 e~l~~l~~~ 293 (629)
..+......
T Consensus 98 ddlsqt~ai 106 (333)
T KOG1853|consen 98 DDLSQTHAI 106 (333)
T ss_pred HHHHHHHHH
Confidence 333333333
No 255
>PRK02793 phi X174 lysis protein; Provisional
Probab=53.44 E-value=1e+02 Score=25.08 Aligned_cols=50 Identities=12% Similarity=-0.017 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhcc
Q 006828 474 NERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGF 523 (629)
Q Consensus 474 eRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~lg~ 523 (629)
.|+..|..+..-.+..+..|..-+..-+..+..+.+.+..|..++.++++
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~ 57 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQP 57 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 44444444444444445555555555555566666666677666666655
No 256
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=53.39 E-value=2e+02 Score=27.18 Aligned_cols=34 Identities=21% Similarity=0.287 Sum_probs=14.8
Q ss_pred hhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHH
Q 006828 133 KNERENEIIALKSEVSGLMGNIENERERLSQACR 166 (629)
Q Consensus 133 ~~~Rk~Ei~~L~eela~l~~~~~~~ke~l~~L~~ 166 (629)
+..=..+|..|.+++..+......+...+..|..
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~ 107 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSS 107 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333334444444444444444444444444433
No 257
>PRK02119 hypothetical protein; Provisional
Probab=52.92 E-value=1.1e+02 Score=24.90 Aligned_cols=14 Identities=21% Similarity=0.126 Sum_probs=5.4
Q ss_pred hhHHHHHHHHHHHH
Q 006828 272 INDELEKEVNKLNE 285 (629)
Q Consensus 272 el~ele~ela~l~e 285 (629)
+|..|+.+++-.+.
T Consensus 10 Ri~~LE~rla~QE~ 23 (73)
T PRK02119 10 RIAELEMKIAFQEN 23 (73)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333433333333
No 258
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=52.81 E-value=2.6e+02 Score=28.16 Aligned_cols=151 Identities=11% Similarity=0.097 Sum_probs=70.9
Q ss_pred HHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccH-HHHHHHHHHHH
Q 006828 374 IEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNELADYKSALDQATLERDNAWKDL-DEQRKSGMDLR 452 (629)
Q Consensus 374 l~e~~~~~e~el~~l~~el~~l~~~l~~le~~~~~le~ei~~l~~~l~~y~~~le~a~~~~~~~~~~l-~~~k~~i~~Lk 452 (629)
+...+...+.++.+++..+..+...... ++.++..+......|...-..+... . ..++ ...-.++..|.
T Consensus 29 l~Q~ird~~~~l~~ar~~~A~~~a~~k~-------~e~~~~~~~~~~~k~e~~A~~Al~~-g--~E~LAr~al~~~~~le 98 (225)
T COG1842 29 LEQAIRDMESELAKARQALAQAIARQKQ-------LERKLEEAQARAEKLEEKAELALQA-G--NEDLAREALEEKQSLE 98 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHC-C--CHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444 4444444444444333322222110 0 0112 23445556666
Q ss_pred HHHHHhhhchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccc-hHHHHHH
Q 006828 453 LKLSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGFN-SDRALSM 531 (629)
Q Consensus 453 ~eI~~LG~vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~lg~v-aiee~~~ 531 (629)
..+..+......+.+-...++.....|...+.++..+...+..... ..+--..+...+....+. |...|+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~--------~akA~~~v~~~~~~~s~~sa~~~fer 170 (225)
T COG1842 99 DLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKA--------AAKAQEKVNRSLGGGSSSSAMAAFER 170 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhcCCCchhhHHHHHH
Confidence 6666666655555555555555555555554444444444444211 111122334444444443 7778888
Q ss_pred HHHHHHHHhhh
Q 006828 532 LKNTAAMVCQS 542 (629)
Q Consensus 532 ~ker~~fl~~q 542 (629)
+.++.+-....
T Consensus 171 ~e~kiee~ea~ 181 (225)
T COG1842 171 MEEKIEEREAR 181 (225)
T ss_pred HHHHHHHHHHH
Confidence 88887655444
No 259
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=52.78 E-value=75 Score=27.89 Aligned_cols=50 Identities=14% Similarity=0.311 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHhhc
Q 006828 473 RNERETLVDLRKKMESHIGLLAEEKELM--QKNLLEAKRNADDLRAKMESIG 522 (629)
Q Consensus 473 keRyefL~~Q~~DLe~~~~~L~~e~~~l--~~~l~~~~k~i~~Lk~~I~~lg 522 (629)
+++++.+.....+...+++.++.++..+ ..++..++-.+..++..+..++
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~ 85 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELS 85 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHH
Confidence 3444444444444444444444444444 4444444444444444444443
No 260
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.70 E-value=3.6e+02 Score=29.83 Aligned_cols=41 Identities=15% Similarity=0.146 Sum_probs=19.7
Q ss_pred hhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 369 REKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQ 409 (629)
Q Consensus 369 ~e~~~l~e~~~~~e~el~~l~~el~~l~~~l~~le~~~~~l 409 (629)
....++...+++.+.+|..+..+-.+|..+.+.....+.+.
T Consensus 389 qrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L~Rs 429 (521)
T KOG1937|consen 389 QRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEALNRS 429 (521)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33444444555555555555555555544444444444433
No 261
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=52.69 E-value=1.1e+02 Score=30.43 Aligned_cols=33 Identities=9% Similarity=0.163 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 383 NEISGLHKEIGELRDVVFKLKASCRDQQDKSKQ 415 (629)
Q Consensus 383 ~el~~l~~el~~l~~~l~~le~~~~~le~ei~~ 415 (629)
.+++..+.....+......+..+++++-.+...
T Consensus 172 ~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~ 204 (216)
T KOG1962|consen 172 KKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSK 204 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 333333333333333333333333333333333
No 262
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=51.99 E-value=2.9e+02 Score=28.56 Aligned_cols=20 Identities=15% Similarity=0.084 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006828 301 ILELENSCSEAMDEKLEMVL 320 (629)
Q Consensus 301 i~~le~~l~~~~~~~~~l~~ 320 (629)
+.+-+.+|.++..++..+.+
T Consensus 84 l~dRetEI~eLksQL~RMrE 103 (305)
T PF15290_consen 84 LHDRETEIDELKSQLARMRE 103 (305)
T ss_pred HHhhHHHHHHHHHHHHHHHH
Confidence 44444445555555554443
No 263
>PRK04406 hypothetical protein; Provisional
Probab=51.93 E-value=1.3e+02 Score=24.65 Aligned_cols=6 Identities=33% Similarity=0.612 Sum_probs=2.1
Q ss_pred HHHHHH
Q 006828 275 ELEKEV 280 (629)
Q Consensus 275 ele~el 280 (629)
.|+.++
T Consensus 15 ~LE~~l 20 (75)
T PRK04406 15 DLECQL 20 (75)
T ss_pred HHHHHH
Confidence 333333
No 264
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=51.28 E-value=2.5e+02 Score=27.49 Aligned_cols=13 Identities=31% Similarity=0.480 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHHH
Q 006828 244 ETDDLKLKIKVIV 256 (629)
Q Consensus 244 ei~~l~~~ie~l~ 256 (629)
.+..++..|-.++
T Consensus 132 ~i~~Le~ki~el~ 144 (190)
T PF05266_consen 132 EIKELEMKILELQ 144 (190)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 265
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=51.27 E-value=2.4e+02 Score=27.43 Aligned_cols=32 Identities=28% Similarity=0.434 Sum_probs=25.5
Q ss_pred cHHHHHHHHHHHHHHHHHhhhchHHhHHHHHH
Q 006828 440 DLDEQRKSGMDLRLKLSEMEKRFEEKVEELAK 471 (629)
Q Consensus 440 ~l~~~k~~i~~Lk~eI~~LG~vN~~AIeEyee 471 (629)
.+..++..+..|+.++..++..+|..|+...+
T Consensus 111 ~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~ 142 (188)
T PF03962_consen 111 ELEELKKELKELKKELEKYSENDPEKIEKLKE 142 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 56778888888999999888888887766553
No 266
>PF11131 PhrC_PhrF: Rap-phr extracellular signalling
Probab=50.62 E-value=8.3 Score=26.68 Aligned_cols=20 Identities=40% Similarity=0.511 Sum_probs=15.8
Q ss_pred cchhhhHh-hHHHHHHHHHHH
Q 006828 604 KSFWTVVS-SATTIFAAASVA 623 (629)
Q Consensus 604 ~~~~~~~~-~~~~~~~~~~~~ 623 (629)
++-|.++| ++.|||.++-++
T Consensus 2 KsKl~l~CLA~aavF~~a~va 22 (37)
T PF11131_consen 2 KSKLFLICLAAAAVFTAAGVA 22 (37)
T ss_pred chhHHHHHHHHHHHHHhhccc
Confidence 45688888 888899988664
No 267
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=50.52 E-value=3.9e+02 Score=29.59 Aligned_cols=47 Identities=17% Similarity=0.188 Sum_probs=35.3
Q ss_pred ccHHHHHHHHHHHHHHHHHhhhchHHh-HHHHHHHHHHHHHHHHHHHHH
Q 006828 439 KDLDEQRKSGMDLRLKLSEMEKRFEEK-VEELAKTRNERETLVDLRKKM 486 (629)
Q Consensus 439 ~~l~~~k~~i~~Lk~eI~~LG~vN~~A-IeEyeevkeRyefL~~Q~~DL 486 (629)
.++..+...+..++.-|..+.|+--.. ..|++.|-++-.||.-| +||
T Consensus 253 kdi~~a~~~L~~m~~~i~~~kp~WkKiWE~EL~~V~eEQqfL~~Q-edL 300 (424)
T PF03915_consen 253 KDISRASKELKKMKEYIKTEKPIWKKIWESELQKVCEEQQFLKLQ-EDL 300 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 456667777777777777777776554 47899999999999999 444
No 268
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=50.10 E-value=3.2e+02 Score=29.47 Aligned_cols=58 Identities=21% Similarity=0.265 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhc
Q 006828 465 KVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIG 522 (629)
Q Consensus 465 AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~lg 522 (629)
..++.+.+-.|++|=..|+..|..++..|...+..+.+++...+..+..|...+..+-
T Consensus 85 ~~~~H~lml~RL~~EL~~Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~ 142 (355)
T PF09766_consen 85 EDDEHQLMLARLEFELEQRKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLK 142 (355)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3456677777888888888888888888888877777777777777766666665544
No 269
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=50.05 E-value=2.6e+02 Score=27.36 Aligned_cols=43 Identities=19% Similarity=0.260 Sum_probs=19.6
Q ss_pred hhHHHHHhhHhHhhhcchhhhhhhhHHHHHHHHHHHHhHHHhHHHH
Q 006828 112 GLFCVFLMTQMKEMGEGLDEEKNERENEIIALKSEVSGLMGNIENE 157 (629)
Q Consensus 112 ~~~~~~~~~~~~~~~~~vd~~~~~Rk~Ei~~L~eela~l~~~~~~~ 157 (629)
.|++-|.. ....|.|| +-+.+|=+++-.++.....+.......
T Consensus 73 ~~~~tl~~--LE~~GFnV-~~l~~RL~kLL~lk~~~~~~~e~~k~l 115 (190)
T PF05266_consen 73 SLMKTLSE--LEEHGFNV-KFLRSRLNKLLSLKDDQEKLLEERKKL 115 (190)
T ss_pred HHHHHHHH--HHHcCCcc-HHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 55555532 23355554 334444444444544444444433333
No 270
>PRK04325 hypothetical protein; Provisional
Probab=49.38 E-value=1.3e+02 Score=24.56 Aligned_cols=47 Identities=11% Similarity=0.053 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhc
Q 006828 469 LAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIG 522 (629)
Q Consensus 469 yeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~lg 522 (629)
+.++..++.|...-.++|..-+..-.. .+..+.+.+..|..++.+++
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~-------~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQ-------TLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhc
Confidence 444444555554444444444444444 44444555555555555544
No 271
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=49.34 E-value=2.7e+02 Score=27.46 Aligned_cols=18 Identities=6% Similarity=0.244 Sum_probs=9.4
Q ss_pred HHhHHHHHHHHHHHHHHH
Q 006828 463 EEKVEELAKTRNERETLV 480 (629)
Q Consensus 463 ~~AIeEyeevkeRyefL~ 480 (629)
.++...|+++.++.+.+.
T Consensus 161 ~~a~~~~er~e~ki~~~e 178 (221)
T PF04012_consen 161 SSAMDSFERMEEKIEEME 178 (221)
T ss_pred cchHHHHHHHHHHHHHHH
Confidence 345555665555554443
No 272
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=49.31 E-value=95 Score=24.94 Aligned_cols=12 Identities=25% Similarity=0.368 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 006828 274 DELEKEVNKLNE 285 (629)
Q Consensus 274 ~ele~ela~l~e 285 (629)
..|+.+++-.+.
T Consensus 7 ~~LE~~la~qe~ 18 (69)
T PF04102_consen 7 EELEIKLAFQED 18 (69)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 273
>PRK14011 prefoldin subunit alpha; Provisional
Probab=49.07 E-value=2.3e+02 Score=26.45 Aligned_cols=43 Identities=9% Similarity=0.035 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHHhhhhhh-HhhhhHhH-HHHhhhhhHHHHHH
Q 006828 525 SDRALSMLKNTAAMVCQSEND-IDGQQELV-VDEKKLQGETDQYA 567 (629)
Q Consensus 525 aiee~~~~ker~~fl~~q~~D-~~ak~~l~-~i~~~~~~m~~~f~ 567 (629)
..+..+.++.|.+||...... ..+-+.+. .+..+...+...+.
T Consensus 86 ~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~~k~~ 130 (144)
T PRK14011 86 VSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKELEKRAQ 130 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444777778888888887776 66666666 66666655555433
No 274
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=48.49 E-value=2.7e+02 Score=27.13 Aligned_cols=27 Identities=19% Similarity=0.135 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 395 LRDVVFKLKASCRDQQDKSKQLVNELA 421 (629)
Q Consensus 395 l~~~l~~le~~~~~le~ei~~l~~~l~ 421 (629)
+...+..+.....+....+..+...+.
T Consensus 140 ~~~~~~~~~~~anrwTDNI~~l~~~~~ 166 (188)
T PF03962_consen 140 LKEEIKIAKEAANRWTDNIFSLKSYLK 166 (188)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 333333333344444444444444443
No 275
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=47.75 E-value=3.2e+02 Score=27.82 Aligned_cols=143 Identities=9% Similarity=0.111 Sum_probs=77.1
Q ss_pred HhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHH----HHHHH
Q 006828 379 VCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNELADYKSALDQATLERDNAWKDLDEQRKSGM----DLRLK 454 (629)
Q Consensus 379 ~~~e~el~~l~~el~~l~~~l~~le~~~~~le~ei~~l~~~l~~y~~~le~a~~~~~~~~~~l~~~k~~i~----~Lk~e 454 (629)
.....+..++...++.+...+..+..-..++-.....+......|+..+.-.-.--..+..++...-.-+. .+...
T Consensus 50 ~~~~~eF~Emkey~d~L~~~L~~ieki~~Rl~kr~~ey~~~~~~fgk~~~lws~~E~~L~~~L~~~a~~~d~~~~~~~~~ 129 (243)
T cd07666 50 KNRPEEFTEMNEYVEAFSQKINVLDKISQRIYKEQREYFEELKEYGPIYTLWSASEEELADSLKGMASCIDRCCKATDKR 129 (243)
T ss_pred CCCCHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666655555555555444444444445554443210000112335555656666 66666
Q ss_pred HHHhhhchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Q 006828 455 LSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESI 521 (629)
Q Consensus 455 I~~LG~vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~l 521 (629)
+..+-......+.+|-..-.-+--...++.++...+..+.+-+.....+...+..++..+..+++..
T Consensus 130 ~~~l~~~f~~~Lkeyv~y~~slK~vlk~R~~~Q~~le~k~e~l~k~~~dr~~~~~ev~~~e~kve~a 196 (243)
T cd07666 130 MKGLSEQLLPVIHEYVLYSETLMGVIKRRDQIQAELDSKVEALANKKADRDLLKEEIEKLEDKVECA 196 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 6666666677777777666666666666666666666665555554444444444444444444444
No 276
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=47.14 E-value=3.7e+02 Score=28.32 Aligned_cols=6 Identities=17% Similarity=0.025 Sum_probs=2.6
Q ss_pred hhHHHH
Q 006828 112 GLFCVF 117 (629)
Q Consensus 112 ~~~~~~ 117 (629)
+|..|+
T Consensus 24 Gp~Gl~ 29 (301)
T PF06120_consen 24 GPPGLV 29 (301)
T ss_pred chHHHH
Confidence 444444
No 277
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=47.14 E-value=5.3e+02 Score=30.20 Aligned_cols=37 Identities=22% Similarity=0.242 Sum_probs=18.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 382 DNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVN 418 (629)
Q Consensus 382 e~el~~l~~el~~l~~~l~~le~~~~~le~ei~~l~~ 418 (629)
...+..|...+..+.....+.-..+..+...+..+=+
T Consensus 225 ~etl~~L~~~v~~l~~~k~qr~~kl~~l~~~~~~LWn 261 (660)
T KOG4302|consen 225 DETLDRLDKMVKKLKEEKKQRLQKLQDLRTKLLELWN 261 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555545444444433
No 278
>PRK00736 hypothetical protein; Provisional
Probab=46.45 E-value=1.5e+02 Score=23.83 Aligned_cols=36 Identities=19% Similarity=0.255 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhc
Q 006828 487 ESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIG 522 (629)
Q Consensus 487 e~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~lg 522 (629)
+..+..|...+..-+..+..+.+++..|..++.+++
T Consensus 18 e~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 18 EKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333344444444444444555555555555555544
No 279
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=46.21 E-value=3.6e+02 Score=27.89 Aligned_cols=6 Identities=33% Similarity=0.207 Sum_probs=2.6
Q ss_pred hccchh
Q 006828 100 ESDQKV 105 (629)
Q Consensus 100 ~~~~~~ 105 (629)
+++..|
T Consensus 82 ~ses~V 87 (269)
T PF05278_consen 82 ISESIV 87 (269)
T ss_pred ccccee
Confidence 444443
No 280
>PRK00295 hypothetical protein; Provisional
Probab=45.47 E-value=1.6e+02 Score=23.66 Aligned_cols=15 Identities=20% Similarity=0.229 Sum_probs=6.0
Q ss_pred hHHHHHHHHHHHHHH
Q 006828 273 NDELEKEVNKLNEIV 287 (629)
Q Consensus 273 l~ele~ela~l~e~l 287 (629)
|..|+.+++-.+..+
T Consensus 7 i~~LE~kla~qE~ti 21 (68)
T PRK00295 7 VTELESRQAFQDDTI 21 (68)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444443333
No 281
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=45.23 E-value=4.1e+02 Score=28.38 Aligned_cols=57 Identities=12% Similarity=0.095 Sum_probs=41.7
Q ss_pred cHHHHHHHHHHHHHHHHHh--------hhchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 440 DLDEQRKSGMDLRLKLSEM--------EKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEE 496 (629)
Q Consensus 440 ~l~~~k~~i~~Lk~eI~~L--------G~vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e 496 (629)
.+..++.++..|+..|... +........+|..+..+.++....++.+..++...+.+
T Consensus 243 ~v~~l~~~i~~l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~~~ 307 (362)
T TIGR01010 243 QVPSLQARIKSLRKQIDEQRNQLSGGLGDSLNEQTADYQRLVLQNELAQQQLKAALTSLQQTRVE 307 (362)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666542 22456667799999999999999999999888887764
No 282
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=44.97 E-value=2.3e+02 Score=31.66 Aligned_cols=83 Identities=14% Similarity=0.153 Sum_probs=67.4
Q ss_pred cHHHHHHHHHHHHHHHHHhhhchHHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 006828 440 DLDEQRKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKKME-SHIGLLAEEKELMQKNLLEAKRNADDLRAKM 518 (629)
Q Consensus 440 ~l~~~k~~i~~Lk~eI~~LG~vN~~AIeEyeevkeRyefL~~Q~~DLe-~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I 518 (629)
.+..+-.+++.++.++..+...|..-.+|-++++.|-.....+...-. .....+..+.+.+......+...+..|..++
T Consensus 60 TlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 60 TLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778889999999999999999999999999999888888876554 4455777777888888888888888888887
Q ss_pred Hhhc
Q 006828 519 ESIG 522 (629)
Q Consensus 519 ~~lg 522 (629)
..++
T Consensus 140 ~~~~ 143 (472)
T TIGR03752 140 AGVL 143 (472)
T ss_pred hhcc
Confidence 6554
No 283
>PRK04325 hypothetical protein; Provisional
Probab=44.76 E-value=1.7e+02 Score=23.87 Aligned_cols=13 Identities=23% Similarity=0.212 Sum_probs=4.7
Q ss_pred hHHHHHHHHHHHH
Q 006828 273 NDELEKEVNKLNE 285 (629)
Q Consensus 273 l~ele~ela~l~e 285 (629)
|..|+.+++-.+.
T Consensus 11 i~~LE~klAfQE~ 23 (74)
T PRK04325 11 ITELEIQLAFQED 23 (74)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 284
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=44.39 E-value=2.8e+02 Score=26.26 Aligned_cols=46 Identities=13% Similarity=0.195 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 006828 466 VEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNA 511 (629)
Q Consensus 466 IeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i 511 (629)
..|...++.....|..+...|+..+..|..++..+.+++..+-.-+
T Consensus 103 ~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im 148 (161)
T TIGR02894 103 QKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIM 148 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444433333
No 285
>COG4911 Uncharacterized conserved protein [Function unknown]
Probab=44.37 E-value=34 Score=29.87 Aligned_cols=73 Identities=16% Similarity=0.231 Sum_probs=50.2
Q ss_pred HHHHhhhchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccc-------hH
Q 006828 454 KLSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGFN-------SD 526 (629)
Q Consensus 454 eI~~LG~vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~lg~v-------ai 526 (629)
-+.+|-|....-.-...+++.+|+.|.-|-+ .-.+.+...+.+.+-.+|.++|.| -+
T Consensus 12 ~~~el~P~l~d~~~~~r~~~n~~e~L~~qed----------------k~~l~e~e~q~k~~l~~i~e~G~iird~d~glV 75 (123)
T COG4911 12 TARELLPWLRDRLIQLRKIKNEIELLLVQED----------------KYALQEYESQTKKILDEIIEKGIIIRDIDIGLV 75 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccc----------------HHHHHHHHHHHHHHHHHHHHcCceeeccccccc
Confidence 3556667777777777888888888877755 122445666777788889999987 33
Q ss_pred HHHHHHHHHHHHHhhh
Q 006828 527 RALSMLKNTAAMVCQS 542 (629)
Q Consensus 527 ee~~~~ker~~fl~~q 542 (629)
+--...+.+|.|+|=-
T Consensus 76 DFpa~~Ng~~~~lCWK 91 (123)
T COG4911 76 DFPAIINGKPAFLCWK 91 (123)
T ss_pred cchhhhCCceEEEEEe
Confidence 4445557788887744
No 286
>PRK00295 hypothetical protein; Provisional
Probab=44.34 E-value=1.6e+02 Score=23.62 Aligned_cols=45 Identities=7% Similarity=0.050 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 006828 469 LAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADD 513 (629)
Q Consensus 469 yeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~ 513 (629)
+.++..++.|...-.++|..-+..-..+++.+...+..+..++.+
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555444444444444444433
No 287
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=44.28 E-value=3.5e+02 Score=27.26 Aligned_cols=52 Identities=19% Similarity=0.153 Sum_probs=32.1
Q ss_pred HhHhhhcchhhhhhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhhh
Q 006828 121 QMKEMGEGLDEEKNERENEIIALKSEVSGLMGNIENERERLSQACREKDLMKG 173 (629)
Q Consensus 121 ~~~~~~~~vd~~~~~Rk~Ei~~L~eela~l~~~~~~~ke~l~~L~~~~~~l~~ 173 (629)
+|.-+|+.+|-.--.-|-.++.|+..++.-.. ..+++.+..+++.++..+.+
T Consensus 53 ~~~rKr~RL~HLS~EEK~~RrKLKNRVAAQta-RDrKKaRm~eme~~i~dL~e 104 (292)
T KOG4005|consen 53 QPKRKRRRLDHLSWEEKVQRRKLKNRVAAQTA-RDRKKARMEEMEYEIKDLTE 104 (292)
T ss_pred chHHHHHhhcccCHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHH
Confidence 66677777776666666778888888776443 34455555555554444433
No 288
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=43.96 E-value=3.9e+02 Score=27.66 Aligned_cols=30 Identities=7% Similarity=0.089 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHhHHHhHHHHHHHHHHHHHH
Q 006828 138 NEIIALKSEVSGLMGNIENERERLSQACRE 167 (629)
Q Consensus 138 ~Ei~~L~eela~l~~~~~~~ke~l~~L~~~ 167 (629)
.++-.+...++.....+...+=...+|-..
T Consensus 47 ~dRV~Fik~v~~~~~tKa~IKLN~KkLY~A 76 (267)
T PF10234_consen 47 QDRVFFIKSVAEFMATKARIKLNPKKLYQA 76 (267)
T ss_pred HHHHHHHHHHHHHHHHHhheeecHHHHHHh
Confidence 444455555666655555554444444443
No 289
>PRK00846 hypothetical protein; Provisional
Probab=43.94 E-value=1.8e+02 Score=24.06 Aligned_cols=36 Identities=8% Similarity=-0.047 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhcc
Q 006828 488 SHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGF 523 (629)
Q Consensus 488 ~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~lg~ 523 (629)
.-+..|...+..-+..+..+...+..|..+++++++
T Consensus 27 ~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~ 62 (77)
T PRK00846 27 QALTELSEALADARLTGARNAELIRHLLEDLGKVRS 62 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333344444444444555555566666666666554
No 290
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=43.83 E-value=6.2e+02 Score=30.03 Aligned_cols=99 Identities=11% Similarity=0.055 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHHHh-----hhchHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhh---H-HHHH
Q 006828 441 LDEQRKSGMDLRLKLSEM-----EKRFEEKVEELAKTRNERETLVDL---RKKMESHIGLLAEEKELMQKN---L-LEAK 508 (629)
Q Consensus 441 l~~~k~~i~~Lk~eI~~L-----G~vN~~AIeEyeevkeRyefL~~Q---~~DLe~~~~~L~~e~~~l~~~---l-~~~~ 508 (629)
-..+..++..|+.+|..- .|.++...+-++.++..++.-... .--|..++..|+.|....... + ..+.
T Consensus 431 ~~~Le~elekLk~eilKAk~s~~~~~~~~L~e~IeKLk~E~d~e~S~A~~~~gLk~kL~~Lr~E~sKa~~~~~~~~~~L~ 510 (762)
T PLN03229 431 VRELEGEVEKLKEQILKAKESSSKPSELALNEMIEKLKKEIDLEYTEAVIAMGLQERLENLREEFSKANSQDQLMHPVLM 510 (762)
T ss_pred CccHHHHHHHHHHHHHhcccccCCCCChHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcccccccccHHHH
Confidence 456788899999999888 788898889999888888765554 566777777777766654210 0 1233
Q ss_pred HHHH----HHHHHHHhhccchHHHHHHHHHHHHHHhhhhh
Q 006828 509 RNAD----DLRAKMESIGFNSDRALSMLKNTAAMVCQSEN 544 (629)
Q Consensus 509 k~i~----~Lk~~I~~lg~vaiee~~~~ker~~fl~~q~~ 544 (629)
.++. +....+.+.++ |..+++.++.|.....
T Consensus 511 eK~~kLk~Efnkkl~ea~n-----~p~lk~Kle~Lk~~~~ 545 (762)
T PLN03229 511 EKIEKLKDEFNKRLSRAPN-----YLSLKYKLDMLNEFSR 545 (762)
T ss_pred HHHHHHHHHHHHhhhcccc-----cHHHHHHHHHHHHHHH
Confidence 3344 44445555554 7778888888776654
No 291
>PRK02793 phi X174 lysis protein; Provisional
Probab=43.79 E-value=1.8e+02 Score=23.69 Aligned_cols=15 Identities=20% Similarity=0.007 Sum_probs=5.9
Q ss_pred hhHHHHHHHHHHHHH
Q 006828 272 INDELEKEVNKLNEI 286 (629)
Q Consensus 272 el~ele~ela~l~e~ 286 (629)
+|..|+.+++-.+..
T Consensus 9 Ri~~LE~~lafQe~t 23 (72)
T PRK02793 9 RLAELESRLAFQEIT 23 (72)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444433333
No 292
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=43.79 E-value=3.1e+02 Score=26.56 Aligned_cols=19 Identities=21% Similarity=0.286 Sum_probs=8.1
Q ss_pred HHHHHHhHHHHHHHHHHHH
Q 006828 336 IERLIEEKDEISHRLEKAV 354 (629)
Q Consensus 336 l~~l~~e~~~le~~i~el~ 354 (629)
...|..++..++..+..+.
T Consensus 97 N~~L~~dl~klt~~~~~l~ 115 (182)
T PF15035_consen 97 NEALQEDLQKLTQDWERLR 115 (182)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444433
No 293
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=43.33 E-value=2.3e+02 Score=26.53 Aligned_cols=97 Identities=12% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHhHHHHHHHHHHHHHH-HHhHHHH
Q 006828 166 REKDLMKGELDCQVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKNERDGDIEAFKKEKGLLGKR-LVGLEKE 244 (629)
Q Consensus 166 ~~~~~l~~~l~~~~~~l~~l~~~l~ele~~~~~le~q~~~l~~e~~~L~~E~~~l~~~i~~l~~~~~~l~~e-l~el~~e 244 (629)
..++.+-.......+++.++...+....+........+.++...+..+...+......+--+......-..- ++++..+
T Consensus 44 e~id~imer~~~ieNdlg~~~~~~~g~kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eq 123 (157)
T COG3352 44 EVIDAIMERMTDIENDLGKVKIEIEGQKKQLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQ 123 (157)
T ss_pred HHHHHHHHHHHHHHhhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006828 245 TDDLKLKIKVIVKEKNAI 262 (629)
Q Consensus 245 i~~l~~~ie~l~~el~el 262 (629)
+..+....+.....+..+
T Consensus 124 V~el~~i~emv~~d~~~l 141 (157)
T COG3352 124 VNELKMIVEMVIKDLREL 141 (157)
T ss_pred HHHHHHHHHHHhccchhh
No 294
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=42.78 E-value=1.7e+02 Score=33.20 Aligned_cols=19 Identities=21% Similarity=0.372 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 006828 241 LEKETDDLKLKIKVIVKEK 259 (629)
Q Consensus 241 l~~ei~~l~~~ie~l~~el 259 (629)
++.+++++...|++++..+
T Consensus 105 l~seI~~~n~kiEelk~~i 123 (907)
T KOG2264|consen 105 LNSEIEEINTKIEELKRLI 123 (907)
T ss_pred HHhHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 295
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=42.52 E-value=3.5e+02 Score=26.71 Aligned_cols=52 Identities=17% Similarity=0.312 Sum_probs=26.5
Q ss_pred hhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 369 REKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNEL 420 (629)
Q Consensus 369 ~e~~~l~e~~~~~e~el~~l~~el~~l~~~l~~le~~~~~le~ei~~l~~~l 420 (629)
..+..+......+...+..+...+..+...+..+..++..+......+..+.
T Consensus 91 ~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~ 142 (221)
T PF04012_consen 91 QRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARE 142 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555555555555555555555555555544444
No 296
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=42.50 E-value=3.8e+02 Score=27.17 Aligned_cols=32 Identities=9% Similarity=0.257 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHhhhchHHhHHHHHHHHHHHH
Q 006828 446 KSGMDLRLKLSEMEKRFEEKVEELAKTRNERE 477 (629)
Q Consensus 446 ~~i~~Lk~eI~~LG~vN~~AIeEyeevkeRye 477 (629)
.....+..+++.++...-..|.++..+..-.+
T Consensus 178 ~~a~nidsqLk~l~~dL~~ii~~lN~~~~~~d 209 (254)
T KOG2196|consen 178 KMAENIDSQLKRLSEDLKQIIKSLNTMSKTVD 209 (254)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhccCccc
Confidence 33444455555555555555555554444333
No 297
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=42.41 E-value=6.3e+02 Score=29.65 Aligned_cols=38 Identities=16% Similarity=0.081 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHHHHHHHcc-----chhHhHHHHHHHHHHHhhhH
Q 006828 560 QGETDQYAAEFQAIVNAFR-----NREKLVEDMKHRVELMQNSV 598 (629)
Q Consensus 560 ~~m~~~f~~~f~~i~~~F~-----~~~~~~~~~~~~~~~~~~~~ 598 (629)
-.|.........++-..|. +....++ |=.+.+..+..-
T Consensus 427 P~~~~~L~~k~~~wE~e~~~~FL~~g~~ll~-m~~e~~~~r~~k 469 (660)
T KOG4302|consen 427 PKMVEALTAKVTAWEEEKGRPFLVDGVPLLE-MLEEYEEHRQEK 469 (660)
T ss_pred chhhHHHHHHHHHHHHhcCCceeecCccHHH-HHHHHHHHHHHH
Confidence 3455555555555555555 5556666 777777766665
No 298
>PF15294 Leu_zip: Leucine zipper
Probab=42.21 E-value=4.2e+02 Score=27.55 Aligned_cols=63 Identities=21% Similarity=0.091 Sum_probs=43.2
Q ss_pred HHHHhHHHHHH-HHHHHHHHHhhhhhhhhHHHhhhhhccchhhhhhhh-------hhHHHHHhhHhHhhhc
Q 006828 65 QRQQVESLSQA-KAALEAELSLFGVEKSELLAELSGESDQKVSLEIEK-------GLFCVFLMTQMKEMGE 127 (629)
Q Consensus 65 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 127 (629)
+-..|+|-++. |+.-=.+..=..+|+.+.-+.|+++....|..++++ -++.+|.-|+.--++.
T Consensus 9 ~Lk~Vds~F~Dlk~srL~e~t~T~~EV~~~ldgL~~~v~~~vesEL~N~~htn~lllrql~~qAek~~lkl 79 (278)
T PF15294_consen 9 HLKEVDSCFQDLKSSRLREDTYTSDEVTEMLDGLQVVVKSEVESELINTSHTNVLLLRQLFSQAEKWYLKL 79 (278)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHh
Confidence 34455555654 444333456677899999999999999999999996 5666776665553333
No 299
>PRK00736 hypothetical protein; Provisional
Probab=42.18 E-value=1.8e+02 Score=23.34 Aligned_cols=13 Identities=31% Similarity=0.291 Sum_probs=5.1
Q ss_pred hHHHHHHHHHHHH
Q 006828 273 NDELEKEVNKLNE 285 (629)
Q Consensus 273 l~ele~ela~l~e 285 (629)
|..|+.+++-.+.
T Consensus 7 i~~LE~klafqe~ 19 (68)
T PRK00736 7 LTELEIRVAEQEK 19 (68)
T ss_pred HHHHHHHHHHHHH
Confidence 3334443333333
No 300
>PF14992 TMCO5: TMCO5 family
Probab=41.84 E-value=4.2e+02 Score=27.52 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 006828 187 DRLIEMEGKERNLRSEILVLQS 208 (629)
Q Consensus 187 ~~l~ele~~~~~le~q~~~l~~ 208 (629)
..|.+.+..+..|..++.....
T Consensus 25 ~ki~~~E~~iq~Le~Eit~~~~ 46 (280)
T PF14992_consen 25 QKIQEKEGAIQSLEREITKMDH 46 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHcc
Confidence 3444444444444444444443
No 301
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=41.77 E-value=1e+02 Score=24.70 Aligned_cols=52 Identities=21% Similarity=0.280 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccc
Q 006828 468 ELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGFN 524 (629)
Q Consensus 468 EyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~lg~v 524 (629)
-|......+.....++..|..++..|-...+ .......+..|..+=..+|||
T Consensus 21 ~~~~~~~~~~~n~~~K~~Li~~~~~l~~~~d-----~~~~~~~~k~l~~~Wk~iG~v 72 (77)
T PF03993_consen 21 FFEEQDAEREENLEKKEALIEEAEALAESED-----WKEAAEEIKELQQEWKEIGPV 72 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----HHHHHHHHHHHHHHHHHcCCC
Confidence 4555666666677777777777777666322 678899999999999999998
No 302
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.24 E-value=2.4e+02 Score=30.00 Aligned_cols=104 Identities=12% Similarity=0.037 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccchHH-HHHHHHHHHHHHhhhhhh
Q 006828 467 EELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGFNSDR-ALSMLKNTAAMVCQSEND 545 (629)
Q Consensus 467 eEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~lg~vaie-e~~~~ker~~fl~~q~~D 545 (629)
.+.+.++.+.+.|..-...|+.-++.|+.+..+++++++.+.+.+.+ .+..+|+ +.. ..++.-+--+||..|.=.
T Consensus 232 aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e---al~~~~n-~~~~~~D~~~~~~~~l~kq~l~ 307 (365)
T KOG2391|consen 232 AEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE---ALEKAEN-LEALDIDEAIECTAPLYKQILE 307 (365)
T ss_pred HHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH---HHhhhcc-CcCCCchhhhhccchHHHHHHH
Q ss_pred -HhhhhHhH-HHHhhhhhHHH---HHHHHHHHHH
Q 006828 546 -IDGQQELV-VDEKKLQGETD---QYAAEFQAIV 574 (629)
Q Consensus 546 -~~ak~~l~-~i~~~~~~m~~---~f~~~f~~i~ 574 (629)
...-..++ +|-.|++.... .|-+-+..|+
T Consensus 308 ~~A~d~aieD~i~~L~~~~r~G~i~l~~yLr~VR 341 (365)
T KOG2391|consen 308 CYALDLAIEDAIYSLGKSLRDGVIDLDQYLRHVR 341 (365)
T ss_pred hhhhhhHHHHHHHHHHHHHhcCeeeHHHHHHHHH
No 303
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.20 E-value=5.9e+02 Score=28.97 Aligned_cols=19 Identities=11% Similarity=0.274 Sum_probs=6.8
Q ss_pred HHHhHHHhHHHHHHHHHHH
Q 006828 146 EVSGLMGNIENERERLSQA 164 (629)
Q Consensus 146 ela~l~~~~~~~ke~l~~L 164 (629)
++.........+++.+..+
T Consensus 332 eIe~~~ke~kdLkEkv~~l 350 (654)
T KOG4809|consen 332 EIESFRKENKDLKEKVNAL 350 (654)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 304
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=40.88 E-value=3.2e+02 Score=30.53 Aligned_cols=19 Identities=21% Similarity=0.275 Sum_probs=7.2
Q ss_pred HHHhHHHHHHHHHHHHHHH
Q 006828 237 RLVGLEKETDDLKLKIKVI 255 (629)
Q Consensus 237 el~el~~ei~~l~~~ie~l 255 (629)
+...+..+...+...+..+
T Consensus 117 ~~~ql~~~~~~~~~~l~~l 135 (472)
T TIGR03752 117 EIEQLKSERQQLQGLIDQL 135 (472)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 305
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=40.67 E-value=5.9e+02 Score=28.85 Aligned_cols=15 Identities=7% Similarity=0.102 Sum_probs=7.8
Q ss_pred HHHHhhhhhhHHHhh
Q 006828 46 EQIKRLKSLNDLLVH 60 (629)
Q Consensus 46 ~~~~~l~~~~~~l~~ 60 (629)
.||..---.|+-++.
T Consensus 44 ~kfs~~lhe~a~~~~ 58 (518)
T PF10212_consen 44 QKFSQYLHENASYLR 58 (518)
T ss_pred HHHHHHHHHhHHHHh
Confidence 455544445665554
No 306
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=40.66 E-value=7e+02 Score=29.69 Aligned_cols=20 Identities=20% Similarity=0.245 Sum_probs=9.0
Q ss_pred HHHHHhHHHhHHHHHHHHHH
Q 006828 144 KSEVSGLMGNIENERERLSQ 163 (629)
Q Consensus 144 ~eela~l~~~~~~~ke~l~~ 163 (629)
..+-+.+...+.-+..+|+.
T Consensus 393 rsENaqLrRrLrilnqqlre 412 (861)
T PF15254_consen 393 RSENAQLRRRLRILNQQLRE 412 (861)
T ss_pred hhhhHHHHHHHHHHHHHHHH
Confidence 33444444444444444444
No 307
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=40.64 E-value=98 Score=23.89 Aligned_cols=8 Identities=13% Similarity=0.106 Sum_probs=3.4
Q ss_pred HHHHHhhh
Q 006828 535 TAAMVCQS 542 (629)
Q Consensus 535 r~~fl~~q 542 (629)
-|+.++++
T Consensus 43 lYE~Vs~~ 50 (55)
T PF05377_consen 43 LYEVVSNQ 50 (55)
T ss_pred HHHHHHcc
Confidence 34444443
No 308
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=40.40 E-value=2.9e+02 Score=25.20 Aligned_cols=71 Identities=14% Similarity=0.232 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHhhhchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhcc
Q 006828 445 RKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGF 523 (629)
Q Consensus 445 k~~i~~Lk~eI~~LG~vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~lg~ 523 (629)
+.++-.|++.-..|.+--+.+-=-+.+|. |+..|+.+-..|..+++.|..+...+..+++.++...+.|-+
T Consensus 46 reEVvrlKQrRRTLKNRGYA~sCR~KRv~--------Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~ 116 (135)
T KOG4196|consen 46 REEVVRLKQRRRTLKNRGYAQSCRVKRVQ--------QKHELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQN 116 (135)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777777777777777777777664 455566666666666666666666666666666666665544
No 309
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=40.38 E-value=8e+02 Score=30.31 Aligned_cols=22 Identities=18% Similarity=0.126 Sum_probs=12.0
Q ss_pred hhhhhhHHHHHHHHHHHHhHHH
Q 006828 131 EEKNERENEIIALKSEVSGLMG 152 (629)
Q Consensus 131 ~~~~~Rk~Ei~~L~eela~l~~ 152 (629)
.+++.=-.||..|+.++.....
T Consensus 404 ~llKd~~~EIerLK~dl~AaRe 425 (1041)
T KOG0243|consen 404 TLLKDLYEEIERLKRDLAAARE 425 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHhHh
Confidence 3455555566666666554433
No 310
>PHA03011 hypothetical protein; Provisional
Probab=40.26 E-value=1.8e+02 Score=25.16 Aligned_cols=52 Identities=23% Similarity=0.172 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhHHHHHHhhHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 006828 201 SEILVLQSDYGRLKKEKNERDGDIEAFKKEKGLLGKRLVGLEKETDDLKLKI 252 (629)
Q Consensus 201 ~q~~~l~~e~~~L~~E~~~l~~~i~~l~~~~~~l~~el~el~~ei~~l~~~i 252 (629)
..+..+..+|..+..+...+..++..+..-+.+.-+.+--+.++++.++..+
T Consensus 64 e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~ni 115 (120)
T PHA03011 64 EILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENI 115 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 3333333334444433333333333333333333333344444444444433
No 311
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=40.26 E-value=4.2e+02 Score=27.05 Aligned_cols=28 Identities=29% Similarity=0.178 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 284 NEIVLALQKEEKVLCGKILELENSCSEA 311 (629)
Q Consensus 284 ~e~l~~l~~~~~~l~~~i~~le~~l~~~ 311 (629)
+..+..+...+....+++.++++++..+
T Consensus 176 nl~F~rlK~ele~tk~Klee~QnelsAw 203 (330)
T KOG2991|consen 176 NLFFLRLKGELEQTKDKLEEAQNELSAW 203 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhee
Confidence 4445555555555555566666666554
No 312
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=38.94 E-value=3.6e+02 Score=25.85 Aligned_cols=110 Identities=16% Similarity=0.207 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHhhhch
Q 006828 383 NEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNELADYKSALDQATLERDNAWKDLDEQRKSGMDLRLKLSEMEKRF 462 (629)
Q Consensus 383 ~el~~l~~el~~l~~~l~~le~~~~~le~ei~~l~~~l~~y~~~le~a~~~~~~~~~~l~~~k~~i~~Lk~eI~~LG~vN 462 (629)
.++..+...+..+...+..+...+...+.++..+.+-|. +......+..+.+.....+.++.+++..+...
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt-----~eemQe~i~~L~kev~~~~erl~~~k~g~~~v---- 149 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALT-----TEEMQEEIQELKKEVAGYRERLKNIKAGTNHV---- 149 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC----
Confidence 444555555555555555555566666666666655442 22222111111223334444555555444333
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 006828 463 EEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLE 506 (629)
Q Consensus 463 ~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~ 506 (629)
..++-..|...|....++-.. ..+-+..=++.+.++++.
T Consensus 150 --tpedk~~v~~~y~~~~~~wrk---~krmf~ei~d~~~e~~pk 188 (201)
T KOG4603|consen 150 --TPEDKEQVYREYQKYCKEWRK---RKRMFREIIDKLLEGLPK 188 (201)
T ss_pred --CHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHcCCcc
Confidence 334445555555555544322 222344434444444443
No 313
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=38.93 E-value=2.3e+02 Score=23.66 Aligned_cols=58 Identities=14% Similarity=0.179 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhcc
Q 006828 466 VEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGF 523 (629)
Q Consensus 466 IeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~lg~ 523 (629)
-.-+.+++.-.+.+..+.+.+..+...+-.+...+..+.+.....++.+-..+..+|.
T Consensus 25 ~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~ 82 (90)
T PF06103_consen 25 KKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGE 82 (90)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3335555555555555555555555555555555555555555555555555555554
No 314
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=38.92 E-value=3.7e+02 Score=25.99 Aligned_cols=47 Identities=23% Similarity=0.209 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 280 VNKLNEIVLALQKEEKVLCGKILELENSCSEAMDEKLEMVLEIKALL 326 (629)
Q Consensus 280 la~l~e~l~~l~~~~~~l~~~i~~le~~l~~~~~~~~~l~~ei~~l~ 326 (629)
+..|+.+...+...-...+.+|..|+..+..-+.+..-+...-..+.
T Consensus 122 Le~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~eEehqRKlvQdkAaqLQ 168 (178)
T PF14073_consen 122 LEKLEKEYLRLTATQSLAETKIKELEEKLQEEEHQRKLVQDKAAQLQ 168 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444566666666555555544444443333
No 315
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=38.90 E-value=1.1e+02 Score=23.66 Aligned_cols=42 Identities=12% Similarity=0.207 Sum_probs=33.0
Q ss_pred cHHHHHHHHHHHHHHHHHhhhchHHhHHHHHHHHHHHHHHHH
Q 006828 440 DLDEQRKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVD 481 (629)
Q Consensus 440 ~l~~~k~~i~~Lk~eI~~LG~vN~~AIeEyeevkeRyefL~~ 481 (629)
++..+..++..|...|..+.+-...|-+|-.+.+.|++....
T Consensus 11 dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~a~ 52 (56)
T PF04728_consen 11 DVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNIAQ 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 455667777778888888888888888888888888887654
No 316
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=38.83 E-value=4.7e+02 Score=27.14 Aligned_cols=19 Identities=26% Similarity=0.247 Sum_probs=7.9
Q ss_pred HhHHHHHHHHHHHHHHHHH
Q 006828 239 VGLEKETDDLKLKIKVIVK 257 (629)
Q Consensus 239 ~el~~ei~~l~~~ie~l~~ 257 (629)
.+...+|..|+.-|+....
T Consensus 120 KEARkEIkQLkQvieTmrs 138 (305)
T PF15290_consen 120 KEARKEIKQLKQVIETMRS 138 (305)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444333
No 317
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=38.41 E-value=6.7e+02 Score=28.82 Aligned_cols=8 Identities=38% Similarity=0.592 Sum_probs=3.0
Q ss_pred HHHHHHhH
Q 006828 143 LKSEVSGL 150 (629)
Q Consensus 143 L~eela~l 150 (629)
|-+..++.
T Consensus 144 lLD~f~~~ 151 (557)
T COG0497 144 LLDAFAGL 151 (557)
T ss_pred HHHHhcCc
Confidence 33333333
No 318
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=38.27 E-value=4.7e+02 Score=27.03 Aligned_cols=37 Identities=14% Similarity=0.179 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHhH
Q 006828 348 HRLEKAVVVLDDKEGEIAKLLREKNDIEERKVCQDNE 384 (629)
Q Consensus 348 ~~i~el~~el~~l~~~leel~~e~~~l~e~~~~~e~e 384 (629)
..|+....+++..+.-+..+..-+-++-++...++.+
T Consensus 197 ~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~E 233 (267)
T PF10234_consen 197 AKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEE 233 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333
No 319
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=38.16 E-value=1.4e+02 Score=34.67 Aligned_cols=27 Identities=26% Similarity=0.454 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHhhhchHHhHHHHHHH
Q 006828 446 KSGMDLRLKLSEMEKRFEEKVEELAKT 472 (629)
Q Consensus 446 ~~i~~Lk~eI~~LG~vN~~AIeEyeev 472 (629)
+..+.+...+=.+.......+.+|+.-
T Consensus 384 k~rk~i~k~lPkle~~L~~~l~~wE~e 410 (619)
T PF03999_consen 384 KERKRIQKKLPKLEEELKKKLEEWEEE 410 (619)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 334444444444544455555555543
No 320
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=38.10 E-value=1e+02 Score=24.84 Aligned_cols=25 Identities=24% Similarity=0.476 Sum_probs=11.1
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHhh
Q 006828 497 KELMQKNLLEAKRNADDLRAKMESI 521 (629)
Q Consensus 497 ~~~l~~~l~~~~k~i~~Lk~~I~~l 521 (629)
+..++..+..+..+...|+.+|..|
T Consensus 26 i~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 26 IAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333334444444445555555
No 321
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=38.07 E-value=2.9e+02 Score=24.47 Aligned_cols=38 Identities=11% Similarity=0.038 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHHHhhhhhh-HhhhhHhH-HHHhhhhhH
Q 006828 525 SDRALSMLKNTAAMVCQSEND-IDGQQELV-VDEKKLQGE 562 (629)
Q Consensus 525 aiee~~~~ker~~fl~~q~~D-~~ak~~l~-~i~~~~~~m 562 (629)
..+.-..+..|-+++..+.++ ...-..+. -+..+...|
T Consensus 85 ~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l 124 (129)
T cd00890 85 LEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEEL 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444677888888888888776 55555555 444444433
No 322
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=37.81 E-value=28 Score=32.48 Aligned_cols=29 Identities=21% Similarity=0.122 Sum_probs=19.9
Q ss_pred hhcccchhhhHhhH-HHHHHHHHHHHHhhc
Q 006828 600 AQKKKSFWTVVSSA-TTIFAAASVAYIARI 628 (629)
Q Consensus 600 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 628 (629)
..++...|+|+.+. ++|+|-++++|++-+
T Consensus 112 ~~~~~~~~~i~~~i~g~ll~i~~giy~~~r 141 (145)
T PF10661_consen 112 KTKKPISPTILLSIGGILLAICGGIYVVLR 141 (145)
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456778888766 456777799996643
No 323
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=37.77 E-value=4.4e+02 Score=26.51 Aligned_cols=20 Identities=5% Similarity=0.047 Sum_probs=13.8
Q ss_pred HHhHHHHHHHHHHHHHHHHH
Q 006828 463 EEKVEELAKTRNERETLVDL 482 (629)
Q Consensus 463 ~~AIeEyeevkeRyefL~~Q 482 (629)
.++...|+++.++.+.....
T Consensus 162 ~sa~~~fer~e~kiee~ea~ 181 (225)
T COG1842 162 SSAMAAFERMEEKIEEREAR 181 (225)
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 47778888777777665443
No 324
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=37.75 E-value=2e+02 Score=25.64 Aligned_cols=34 Identities=32% Similarity=0.250 Sum_probs=21.8
Q ss_pred hHhHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhH
Q 006828 60 HRSHEQRQQVESLSQAKAALEAELSLFGVEKSEL 93 (629)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l 93 (629)
.....=+++++.|++....|...+..+-.=++.|
T Consensus 6 ~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L 39 (126)
T TIGR00293 6 AELQILQQQVESLQAQIAALRALIAELETAIETL 39 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556777888887777777777665444444
No 325
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=37.74 E-value=2.9e+02 Score=29.67 Aligned_cols=74 Identities=18% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHHHHhhhhhhHHHhhHhHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhHHHhhhhhccchhhhhhhhhhHHHHHhhHhHh
Q 006828 45 SEQIKRLKSLNDLLVHRSHEQRQQVESLSQAKAALEAELSLFGVEKSELLAELSGESDQKVSLEIEKGLFCVFLMTQMKE 124 (629)
Q Consensus 45 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (629)
....+.|...|..|--+..+=..|++.+..+|.++|..|-.+- .
T Consensus 143 ~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~KF-----------------------------~------- 186 (342)
T PF06632_consen 143 QAENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDLYAKF-----------------------------V------- 186 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------H-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------H-------
Q ss_pred hhcchhhhhhhhHHHHHHHHHHHHhHHHhHHHHHHH
Q 006828 125 MGEGLDEEKNERENEIIALKSEVSGLMGNIENERER 160 (629)
Q Consensus 125 ~~~~vd~~~~~Rk~Ei~~L~eela~l~~~~~~~ke~ 160 (629)
-+|+++|.-|+.|...+......-......
T Consensus 187 ------~vLNeKK~KIR~lq~~L~~~~~~~~~~~~~ 216 (342)
T PF06632_consen 187 ------LVLNEKKAKIRELQRLLASAKEEEKSPKQE 216 (342)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred ------HHHHhHHHHHHHHHHHHHHhhccccchhhh
No 326
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=37.72 E-value=2.9e+02 Score=24.45 Aligned_cols=49 Identities=16% Similarity=0.089 Sum_probs=35.7
Q ss_pred HHhhhchHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 006828 456 SEMEKRFEE--KVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNL 504 (629)
Q Consensus 456 ~~LG~vN~~--AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l 504 (629)
+-+|||... -.+--..|..|++|.......++.+++..+.+....+..+
T Consensus 56 KliGpvLvkqel~EAr~nV~kRlefI~~Eikr~e~~i~d~q~e~~k~R~~v 106 (120)
T KOG3478|consen 56 KLIGPVLVKQELEEARTNVGKRLEFISKEIKRLENQIRDSQEEFEKQREAV 106 (120)
T ss_pred HHhcchhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347888743 3444566899999999999999999888887665554443
No 327
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=37.56 E-value=2.7e+02 Score=27.35 Aligned_cols=18 Identities=33% Similarity=0.429 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006828 185 LKDRLIEMEGKERNLRSE 202 (629)
Q Consensus 185 l~~~l~ele~~~~~le~q 202 (629)
|+-++.+++..+...+..
T Consensus 101 LkrELa~Le~~l~~~~~~ 118 (195)
T PF12761_consen 101 LKRELAELEEKLSKVEQA 118 (195)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444333333
No 328
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=37.36 E-value=5.4e+02 Score=27.46 Aligned_cols=82 Identities=20% Similarity=0.200 Sum_probs=43.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 336 IERLIEEKDEISHRLEKAVVVLDDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQ 415 (629)
Q Consensus 336 l~~l~~e~~~le~~i~el~~el~~l~~~leel~~e~~~l~e~~~~~e~el~~l~~el~~l~~~l~~le~~~~~le~ei~~ 415 (629)
+......+......+..+...+..+...++....++..+..........+.....-+..|.++..+....+..+...+..
T Consensus 230 l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~~~~ 309 (344)
T PF12777_consen 230 LEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEELEEQLKN 309 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHHHhcc
Confidence 33334444444444444555555555555555555555555555555555555555556555555555555555555444
Q ss_pred HH
Q 006828 416 LV 417 (629)
Q Consensus 416 l~ 417 (629)
+.
T Consensus 310 l~ 311 (344)
T PF12777_consen 310 LV 311 (344)
T ss_dssp HH
T ss_pred cH
Confidence 43
No 329
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=37.27 E-value=1.5e+02 Score=23.20 Aligned_cols=27 Identities=26% Similarity=0.387 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 006828 488 SHIGLLAEEKELMQKNLLEAKRNADDL 514 (629)
Q Consensus 488 ~~~~~L~~e~~~l~~~l~~~~k~i~~L 514 (629)
..+..|..+...+...+..+...+..|
T Consensus 33 ~~~~~L~~en~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 33 EKVEELESENEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 330
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=37.01 E-value=8.8e+02 Score=29.80 Aligned_cols=96 Identities=14% Similarity=0.131 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 006828 138 NEIIALKSEVSGLMGNIENERERLSQACREKDLMKGELDCQVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEK 217 (629)
Q Consensus 138 ~Ei~~L~eela~l~~~~~~~ke~l~~L~~~~~~l~~~l~~~~~~l~~l~~~l~ele~~~~~le~q~~~l~~e~~~L~~E~ 217 (629)
.+++.|.+++..+...++.++.....+...+......+.....++...-+.+.+++..+..+......++..-......+
T Consensus 262 ~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i 341 (1072)
T KOG0979|consen 262 KELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRI 341 (1072)
T ss_pred HHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555555555555555555555555555555544444444444444
Q ss_pred hhHHHhHHHHHHHHHH
Q 006828 218 NERDGDIEAFKKEKGL 233 (629)
Q Consensus 218 ~~l~~~i~~l~~~~~~ 233 (629)
......|..++..+..
T Consensus 342 ~~~~k~i~~~q~el~~ 357 (1072)
T KOG0979|consen 342 EKAKKMILDAQAELQE 357 (1072)
T ss_pred HHHHHHHHHHHhhhhh
Confidence 4444444444444443
No 331
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=36.84 E-value=4.8e+02 Score=29.26 Aligned_cols=130 Identities=15% Similarity=0.203 Sum_probs=0.0
Q ss_pred HhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhhhhhh-HhhhhHhHHHHhhhhhHHHHHHHHHHHHHHHcc
Q 006828 500 MQKNLLEAKRNADDLRAKMESIGFNSDRALSMLKNTAAMVCQSEND-IDGQQELVVDEKKLQGETDQYAAEFQAIVNAFR 578 (629)
Q Consensus 500 l~~~l~~~~k~i~~Lk~~I~~lg~vaiee~~~~ker~~fl~~q~~D-~~ak~~l~~i~~~~~~m~~~f~~~f~~i~~~F~ 578 (629)
++..+.++....+.=....+.=--+--..=..+.+-|.|+..+..+ ....+++.++..--+.|..-....-..+..-..
T Consensus 89 l~~Kl~eLE~e~k~d~v~~khn~~I~~k~g~~L~~v~~~~~~~~~~~~~e~~q~~~LekAl~~~~~i~~~E~~~l~~L~~ 168 (508)
T PF00901_consen 89 LQRKLKELEDEQKEDEVREKHNKKIIEKFGNDLEKVYKFMKGQEKVEEEEENQIEILEKALKSYGKIVKEENKQLDRLAR 168 (508)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -----------chhHhHHHHHHHHHHHhhhHHhhc--------------ccchhhhHhhHHHHHHHHHHHHHhhcC
Q 006828 579 -----------NREKLVEDMKHRVELMQNSVEAQK--------------KKSFWTVVSSATTIFAAASVAYIARIR 629 (629)
Q Consensus 579 -----------~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (629)
+--+||+.|.+.+.-|+++|++.+ ...+.-..+.---+|.|+...-+|.+|
T Consensus 169 AL~kE~~~Rt~dE~~mv~~yr~ki~aL~~aIe~Er~~m~EEAiqe~~dmsaeVlE~AaeEVP~vGag~At~iATaR 244 (508)
T PF00901_consen 169 ALQKESRERTQDERKMVEEYRQKIDALKNAIEVEREGMQEEAIQEIADMSAEVLEHAAEEVPLVGAGVATGIATAR 244 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcccHHHHHHHhhhCCcccHHHHHHHHHHH
No 332
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=36.83 E-value=3.2e+02 Score=24.64 Aligned_cols=31 Identities=19% Similarity=0.284 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 399 VFKLKASCRDQQDKSKQLVNELADYKSALDQ 429 (629)
Q Consensus 399 l~~le~~~~~le~ei~~l~~~l~~y~~~le~ 429 (629)
+..++..+..+......+...|......+..
T Consensus 15 ~QqLq~ql~~~~~qk~~le~qL~E~~~al~E 45 (119)
T COG1382 15 LQQLQQQLQKVILQKQQLEAQLKEIEKALEE 45 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444433433333
No 333
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=36.76 E-value=2.8e+02 Score=23.92 Aligned_cols=49 Identities=8% Similarity=-0.053 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhhhchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 448 GMDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEE 496 (629)
Q Consensus 448 i~~Lk~eI~~LG~vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e 496 (629)
+..-...+.-|+.+|..++..|..+...-..+....++|......|+.-
T Consensus 16 l~~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~ 64 (99)
T PF10046_consen 16 LEATNEDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPY 64 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445556677777777777777777777777777766666655553
No 334
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=36.47 E-value=2.4e+02 Score=24.91 Aligned_cols=48 Identities=17% Similarity=0.214 Sum_probs=23.5
Q ss_pred HHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 374 IEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNELA 421 (629)
Q Consensus 374 l~e~~~~~e~el~~l~~el~~l~~~l~~le~~~~~le~ei~~l~~~l~ 421 (629)
+-+.+..++..+..+..++..|+..+..+-.+=..+..+..++..++.
T Consensus 6 l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~ 53 (107)
T PF06156_consen 6 LFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLE 53 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444445555555555554
No 335
>COG5293 Predicted ATPase [General function prediction only]
Probab=36.39 E-value=6.4e+02 Score=28.06 Aligned_cols=117 Identities=15% Similarity=0.103 Sum_probs=67.9
Q ss_pred HHhhhchHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccc-----hHHHH
Q 006828 456 SEMEKRFEEK-VEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGFN-----SDRAL 529 (629)
Q Consensus 456 ~~LG~vN~~A-IeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~lg~v-----aiee~ 529 (629)
.+.|-.-|+- ...|+.|.+=|.++... +.+-|+.++..++.++..+.-.+..+-.+.++.-.+ ++++|
T Consensus 308 e~vg~~fpg~Vkk~~e~v~~F~r~~~e~------R~~yl~~ei~~i~~dLk~~n~~~~~l~~~rae~l~~Lk~~g~~e~y 381 (591)
T COG5293 308 EEVGVLFPGQVKKDFEHVIAFNRAITEE------RHDYLQEEIAEIEGDLKEVNAELDDLGKRRAEGLAFLKNRGVFEKY 381 (591)
T ss_pred HHhhhcChHHHHHhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 3344444442 34566666666666543 444567777777777777777777777766666555 88888
Q ss_pred HHHHHHH-------HHHhhhhhhHhhhhHhH-HHHh----------hhhhHHHHHHHHHHHHHHHcc
Q 006828 530 SMLKNTA-------AMVCQSENDIDGQQELV-VDEK----------KLQGETDQYAAEFQAIVNAFR 578 (629)
Q Consensus 530 ~~~ker~-------~fl~~q~~D~~ak~~l~-~i~~----------~~~~m~~~f~~~f~~i~~~F~ 578 (629)
..|.+-| .++.-+..|..-...+- -|.. ++.+..+.+.+-|..|...|+
T Consensus 382 ~~l~ee~~~~~~elae~~~rie~l~k~~~~~~~i~~lkhe~l~~~~r~y~e~q~q~~~~~~~~~lF~ 448 (591)
T COG5293 382 QTLCEEIIALRGELAELEYRIEPLRKLHALDQYIGTLKHECLDLEERIYTEVQQQCSLFASIGRLFK 448 (591)
T ss_pred HHHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 8887754 45555555533333333 3333 333333334444555666555
No 336
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=35.75 E-value=5.5e+02 Score=27.11 Aligned_cols=14 Identities=21% Similarity=0.145 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 006828 194 GKERNLRSEILVLQ 207 (629)
Q Consensus 194 ~~~~~le~q~~~l~ 207 (629)
+.+..+.+...++.
T Consensus 76 sKLeelCRelQr~n 89 (391)
T KOG1850|consen 76 SKLEELCRELQRAN 89 (391)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 337
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=35.65 E-value=8.5e+02 Score=29.23 Aligned_cols=124 Identities=12% Similarity=0.187 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhch---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHH
Q 006828 441 LDEQRKSGMDLRLKLSEMEKRF---EEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQK--NLLEAKRNADDLR 515 (629)
Q Consensus 441 l~~~k~~i~~Lk~eI~~LG~vN---~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~--~l~~~~k~i~~Lk 515 (629)
...++.++..++..|+.....- +..+.++..|+.|.+--..-..+- .....|..+++.+.. ++..+..++..++
T Consensus 79 a~~L~~~~~~v~~~~~~~e~~t~~s~~~L~~ld~vK~rm~~a~~~L~EA-~~w~~l~~~v~~~~~~~d~~~~a~~l~~m~ 157 (766)
T PF10191_consen 79 AASLQEQMASVQEEIKAVEQDTAQSMAQLAELDSVKSRMEAARETLQEA-DNWSTLSAEVDDLFESGDIAKIADRLAEMQ 157 (766)
T ss_pred HHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3445555555555555443322 445666666777766554443221 234456666666654 5889999999999
Q ss_pred HHHHhhccch---H--HHHHHHHHHHHHHhhhhhhHhhhhHhH-HHHhhhhhHHHHHHHHHHHH
Q 006828 516 AKMESIGFNS---D--RALSMLKNTAAMVCQSENDIDGQQELV-VDEKKLQGETDQYAAEFQAI 573 (629)
Q Consensus 516 ~~I~~lg~va---i--ee~~~~ker~~fl~~q~~D~~ak~~l~-~i~~~~~~m~~~f~~~f~~i 573 (629)
..+..+|.++ . ..++.+++|++=+ +.-.|. .+...+-+-...|..-|..|
T Consensus 158 ~sL~~l~~~pd~~~r~~~le~l~nrLEa~--------vsp~Lv~al~~~~~~~~~~~~~if~~i 213 (766)
T PF10191_consen 158 RSLAVLQDVPDYEERRQQLEALKNRLEAL--------VSPQLVQALNSRDVDAAKEYVKIFSSI 213 (766)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHHHHHH--------hhHHHHHHHHhcCHHHHHHHHHHHHHc
Confidence 9999999983 1 1455555555322 233455 66666666667777666666
No 338
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=35.54 E-value=2.5e+02 Score=23.05 Aligned_cols=30 Identities=20% Similarity=0.139 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 006828 488 SHIGLLAEEKELMQKNLLEAKRNADDLRAK 517 (629)
Q Consensus 488 ~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~ 517 (629)
.+--.|+.++.+++..+....+.+..+...
T Consensus 43 keNieLKve~~~L~~el~~~~~~l~~a~~~ 72 (75)
T PF07989_consen 43 KENIELKVEVESLKRELQEKKKLLKEAEKA 72 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444433
No 339
>PHA03011 hypothetical protein; Provisional
Probab=35.42 E-value=3e+02 Score=23.88 Aligned_cols=49 Identities=12% Similarity=0.164 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Q 006828 466 VEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESI 521 (629)
Q Consensus 466 IeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~l 521 (629)
+..|.++..+|..+...++|++-=++.-. ..+.-++.+++.||..|..+
T Consensus 70 ~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~-------d~I~~LraeIDkLK~niaN~ 118 (120)
T PHA03011 70 IAQYNELLDEYNLIENEIKDLEIIIQDND-------DEIHFLRAEIDKLKENIANL 118 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhch-------HHHHHHHHHHHHHHHHHhcc
Confidence 33444444444444444444443333333 33445556666666665543
No 340
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=34.90 E-value=6.4e+02 Score=27.62 Aligned_cols=34 Identities=21% Similarity=0.296 Sum_probs=17.8
Q ss_pred HhhHhHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhH
Q 006828 58 LVHRSHEQRQQVESLSQAKAALEAELSLFGVEKSEL 93 (629)
Q Consensus 58 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l 93 (629)
=+|..+|+..|-.+-..| -|...|.-|.+-..+|
T Consensus 48 rIkq~FekkNqksa~~i~--~lqkkL~~y~~~l~el 81 (395)
T PF10267_consen 48 RIKQVFEKKNQKSAQTIA--QLQKKLEQYHKRLKEL 81 (395)
T ss_pred HHHHHHHHHhHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 356666666665555444 3444455555444433
No 341
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=34.34 E-value=2.2e+02 Score=22.08 Aligned_cols=32 Identities=6% Similarity=0.117 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006828 180 KEASRLKDRLIEMEGKERNLRSEILVLQSDYG 211 (629)
Q Consensus 180 ~~l~~l~~~l~ele~~~~~le~q~~~l~~e~~ 211 (629)
..+..+...+..+...+...+.++.+...+++
T Consensus 17 ~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlD 48 (56)
T PF04728_consen 17 SKVDQLSSDVNALRADVQAAKEEAARANQRLD 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444444444444433
No 342
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=34.19 E-value=53 Score=25.53 Aligned_cols=31 Identities=29% Similarity=0.415 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006828 472 TRNERETLVDLRKKMESHIGLLAEEKELMQK 502 (629)
Q Consensus 472 vkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~ 502 (629)
|+++.+.|..++.+|..+.+.|+.|...+..
T Consensus 12 VrEEVevLK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 12 VREEVEVLKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp -TTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6778889999999999999999988766543
No 343
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=34.13 E-value=2.4e+02 Score=27.23 Aligned_cols=19 Identities=21% Similarity=0.181 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 006828 186 KDRLIEMEGKERNLRSEIL 204 (629)
Q Consensus 186 ~~~l~ele~~~~~le~q~~ 204 (629)
+.++...+.....++.|.+
T Consensus 167 k~el~~~~~~~~~LkkQ~~ 185 (192)
T PF05529_consen 167 KKELEKKEKEIEALKKQSE 185 (192)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 344
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=34.10 E-value=2.6e+02 Score=22.91 Aligned_cols=17 Identities=24% Similarity=0.112 Sum_probs=6.7
Q ss_pred HHHHHHHHHHhHHHHHH
Q 006828 201 SEILVLQSDYGRLKKEK 217 (629)
Q Consensus 201 ~q~~~l~~e~~~L~~E~ 217 (629)
..+..+..+...|+-++
T Consensus 7 ~~i~~L~KENF~LKLrI 23 (75)
T PF07989_consen 7 EQIDKLKKENFNLKLRI 23 (75)
T ss_pred HHHHHHHHhhhhHHHHH
Confidence 33344444444444333
No 345
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=34.06 E-value=5.5e+02 Score=27.42 Aligned_cols=43 Identities=19% Similarity=0.232 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 006828 138 NEIIALKSEVSGLMGNIENERERLSQACREKDLMKGELDCQVK 180 (629)
Q Consensus 138 ~Ei~~L~eela~l~~~~~~~ke~l~~L~~~~~~l~~~l~~~~~ 180 (629)
+|.+.|.++..+++.........++.+.+-...-...++....
T Consensus 4 eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~Qkk 46 (330)
T PF07851_consen 4 EEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKK 46 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666655555555444333433333
No 346
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=33.98 E-value=4.9e+02 Score=27.81 Aligned_cols=10 Identities=20% Similarity=0.321 Sum_probs=4.4
Q ss_pred hhhhH-hhHHH
Q 006828 606 FWTVV-SSATT 615 (629)
Q Consensus 606 ~~~~~-~~~~~ 615 (629)
-|-+. +|.+-
T Consensus 294 ewqv~~~~~~f 304 (330)
T PF07851_consen 294 EWQVFVCGLLF 304 (330)
T ss_pred HHHHHHHHHHH
Confidence 45544 34433
No 347
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=33.34 E-value=5.6e+02 Score=26.41 Aligned_cols=60 Identities=15% Similarity=0.139 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 308 CSEAMDEKLEMVLEIKALLDQEREKQKRIERLIEEKDEISHRLEKAVVVLDDKEGEIAKL 367 (629)
Q Consensus 308 l~~~~~~~~~l~~ei~~l~~e~~e~~~~l~~l~~e~~~le~~i~el~~el~~l~~~leel 367 (629)
+......+.........|...|.....+++.+...+..+...--....+++..+..+.++
T Consensus 121 ~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqkl 180 (338)
T KOG3647|consen 121 LQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQKL 180 (338)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 333333333333444444444444444455555555555554444444444444444443
No 348
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=33.32 E-value=4.7e+02 Score=25.54 Aligned_cols=73 Identities=15% Similarity=0.136 Sum_probs=32.5
Q ss_pred hhhhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 131 EEKNERENEIIALKSEVSGLMGNIENERERLSQACREKDLMKGELDCQVKEASRLKDRLIEMEGKERNLRSEI 203 (629)
Q Consensus 131 ~~~~~Rk~Ei~~L~eela~l~~~~~~~ke~l~~L~~~~~~l~~~l~~~~~~l~~l~~~l~ele~~~~~le~q~ 203 (629)
..|.|+..=+..|..++.+....+......|..-..-..............+..+...+.....++.....-.
T Consensus 60 AaL~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a 132 (188)
T PF05335_consen 60 AALAGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVA 132 (188)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555444444444444333333333333344444444444444433333333
No 349
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=33.23 E-value=3.9e+02 Score=24.58 Aligned_cols=119 Identities=15% Similarity=0.181 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 006828 441 LDEQRKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMES 520 (629)
Q Consensus 441 l~~~k~~i~~Lk~eI~~LG~vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~ 520 (629)
+......+..+......|-.-|+.-..++...+............|..+...+..+...+...++ -..+...+..
T Consensus 29 ~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~s-----~~~l~~~L~~ 103 (150)
T PF07200_consen 29 VQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELSSNYS-----PDALLARLQA 103 (150)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-----HHHHHHHHHH
Confidence 45555666666666666666666666666666655555555555555555555554443332221 1122222222
Q ss_pred hccchHHHHHHHHHHH--HHHhhhhhhHhhhhHhHHHHhhhhhHHHHHHHHHHHHHHHccchhHhHHH
Q 006828 521 IGFNSDRALSMLKNTA--AMVCQSENDIDGQQELVVDEKKLQGETDQYAAEFQAIVNAFRNREKLVED 586 (629)
Q Consensus 521 lg~vaiee~~~~ker~--~fl~~q~~D~~ak~~l~~i~~~~~~m~~~f~~~f~~i~~~F~~~~~~~~~ 586 (629)
++.+.+..++.. .|+.+- ++ ...|...|-..+..|.-|....|.
T Consensus 104 ----~~~e~eeeSe~lae~fl~g~---------------~d---~~~Fl~~f~~~R~~yH~R~~K~Ek 149 (150)
T PF07200_consen 104 ----AASEAEEESEELAEEFLDGE---------------ID---VDDFLKQFKEKRKLYHLRRAKEEK 149 (150)
T ss_dssp ----HHHHHHHHHHHHC-S-SSSH---------------HH---HHHHHHHHHHHHHHHHHHH---HH
T ss_pred ----HHHHHHHHHHHHHHHHhCCC---------------CC---HHHHHHHHHHHHHHHHHHHhhhcc
Confidence 222333333333 333321 11 357888888888888776655554
No 350
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=33.01 E-value=5.8e+02 Score=27.03 Aligned_cols=56 Identities=16% Similarity=0.121 Sum_probs=25.5
Q ss_pred HHHHHH-HHHhHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 006828 140 IIALKS-EVSGLMGNIENERERLSQACREKDLMKGELDCQVKEASRLKDRLIEMEGK 195 (629)
Q Consensus 140 i~~L~e-ela~l~~~~~~~ke~l~~L~~~~~~l~~~l~~~~~~l~~l~~~l~ele~~ 195 (629)
|..+.+ .+.++.....+..=...+|..+...+--+++.+...|......+++-...
T Consensus 113 ~~e~~Dskv~EveekykkaMvsnaQLDNEKsnl~YqVDtLKD~LeE~eeqLaeS~Re 169 (405)
T KOG2010|consen 113 LSELRDSKVSEVEEKYKKAMVSNAQLDNEKNNLIYQVDTLKDVLEEQEEQLAESYRE 169 (405)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHhhcccccceeeeHHHHHHHHHHHHHHHHHHHHH
Confidence 444444 33555555554444444555555444444444444444444333333333
No 351
>PF15470 DUF4637: Domain of unknown function (DUF4637)
Probab=32.94 E-value=14 Score=33.91 Aligned_cols=22 Identities=23% Similarity=0.481 Sum_probs=15.6
Q ss_pred HHHHHHHHhhhHHhhcccchhhhHhhH
Q 006828 587 MKHRVELMQNSVEAQKKKSFWTVVSSA 613 (629)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (629)
-.+||..|+-|- .|||+|+|-.
T Consensus 78 StqqValLRRad-----sgFWgwlsPf 99 (173)
T PF15470_consen 78 STQQVALLRRAD-----SGFWGWLSPF 99 (173)
T ss_pred hhhHHHHhhccc-----CCchhhhcHH
Confidence 356777776553 7999999843
No 352
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=32.84 E-value=4.2e+02 Score=24.89 Aligned_cols=17 Identities=12% Similarity=0.216 Sum_probs=8.0
Q ss_pred HHHHHHHhhhchHHhHH
Q 006828 451 LRLKLSEMEKRFEEKVE 467 (629)
Q Consensus 451 Lk~eI~~LG~vN~~AIe 467 (629)
|+..|...|..|+.++-
T Consensus 87 i~~al~~akakn~~av~ 103 (155)
T PF06810_consen 87 IKSALKGAKAKNPKAVK 103 (155)
T ss_pred HHHHHHHcCCCCHHHHH
Confidence 34444455555544443
No 353
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=32.82 E-value=5.1e+02 Score=27.42 Aligned_cols=10 Identities=40% Similarity=0.235 Sum_probs=4.3
Q ss_pred HHHHHHHHhh
Q 006828 77 AALEAELSLF 86 (629)
Q Consensus 77 ~~~~~~l~~~ 86 (629)
+..|+.|+.+
T Consensus 21 ~laearlaak 30 (405)
T KOG2010|consen 21 ALAEARLAAK 30 (405)
T ss_pred HHHHHHHHHH
Confidence 3444444433
No 354
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=32.68 E-value=5.6e+02 Score=26.22 Aligned_cols=18 Identities=28% Similarity=0.158 Sum_probs=11.8
Q ss_pred ccccccchhcccCCCCCC
Q 006828 26 NLTQGKTVALTHRNSMED 43 (629)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~ 43 (629)
|..-+.|+|.+-.+.|++
T Consensus 38 d~~~s~~~A~~~~tGm~~ 55 (330)
T KOG2991|consen 38 DIFGSTTVAPGVRTGMIL 55 (330)
T ss_pred ccccCCCCCCCCccchhh
Confidence 334455777777777776
No 355
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=32.42 E-value=4.3e+02 Score=25.12 Aligned_cols=69 Identities=13% Similarity=0.149 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHH---HHHhhhchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 006828 441 LDEQRKSGMDLRLK---LSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKR 509 (629)
Q Consensus 441 l~~~k~~i~~Lk~e---I~~LG~vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k 509 (629)
++..-.-+..++.. ...+.+.|.....+...++.+++.|......|..+++.++.+-..|..-++.+++
T Consensus 82 l~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARk 153 (161)
T TIGR02894 82 LQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARK 153 (161)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444432 4455556666666666666666666666777777777666666666665555544
No 356
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=31.65 E-value=2.7e+02 Score=22.28 Aligned_cols=57 Identities=14% Similarity=0.123 Sum_probs=50.0
Q ss_pred cHHHHHhhhhhhHHHhhHhHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhHHHhhhhh
Q 006828 44 PSEQIKRLKSLNDLLVHRSHEQRQQVESLSQAKAALEAELSLFGVEKSELLAELSGE 100 (629)
Q Consensus 44 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~ 100 (629)
.+.++..|=.+|..|=.|...=|+|++++...++.|-.....+..-+..+-.+|...
T Consensus 5 Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~l 61 (65)
T TIGR02449 5 LAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKAL 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 578899999999999999999999999999999999999888887777777777654
No 357
>PF12590 Acyl-thio_N: Acyl-ATP thioesterase; InterPro: IPR021113 This entry represents the N-terminal domain of acyl-ATP thioesterases from bacteria and eukaryotes. These proteins are typically between 120 and 131 amino acids in length. The plant acyl-acyl carrier protein (ACP) thioesterases (TEs) play an essential role in chain termination during de novo fatty acid synthesis [].; GO: 0016790 thiolester hydrolase activity
Probab=31.38 E-value=32 Score=30.88 Aligned_cols=15 Identities=47% Similarity=0.791 Sum_probs=12.1
Q ss_pred hhhhH-hhHHHHHHHH
Q 006828 606 FWTVV-SSATTIFAAA 620 (629)
Q Consensus 606 ~~~~~-~~~~~~~~~~ 620 (629)
-|.++ .+.||||-||
T Consensus 95 DWSMLLAAITTIFlAA 110 (129)
T PF12590_consen 95 DWSMLLAAITTIFLAA 110 (129)
T ss_pred cHHHHHHHHHHHHHHh
Confidence 38887 6889998876
No 358
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=31.33 E-value=8.2e+02 Score=27.73 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=9.6
Q ss_pred HHHHHHHHHhHHHhHHHHHHHHHHH
Q 006828 140 IIALKSEVSGLMGNIENERERLSQA 164 (629)
Q Consensus 140 i~~L~eela~l~~~~~~~ke~l~~L 164 (629)
+..+.-.+..+...+...+..+..+
T Consensus 111 ~a~lk~~l~e~~~El~~l~~~l~~l 135 (511)
T PF09787_consen 111 LAVLKIRLQELDQELRRLRRQLEEL 135 (511)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 359
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=31.32 E-value=5.3e+02 Score=25.55 Aligned_cols=18 Identities=11% Similarity=0.248 Sum_probs=11.2
Q ss_pred HHhHHHHHHHHHHHHHHH
Q 006828 463 EEKVEELAKTRNERETLV 480 (629)
Q Consensus 463 ~~AIeEyeevkeRyefL~ 480 (629)
..+...|+++.++.+.+.
T Consensus 162 ~~a~~~fer~e~ki~~~e 179 (219)
T TIGR02977 162 DEAMARFEQYERRVDELE 179 (219)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 466777777776644443
No 360
>PRK11519 tyrosine kinase; Provisional
Probab=31.30 E-value=9.5e+02 Score=28.49 Aligned_cols=15 Identities=7% Similarity=0.215 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHcc
Q 006828 564 DQYAAEFQAIVNAFR 578 (629)
Q Consensus 564 ~~f~~~f~~i~~~F~ 578 (629)
.+|...++.++..|.
T Consensus 623 ~~~~~ll~~l~~~yD 637 (719)
T PRK11519 623 ERFAELVNWASKNYD 637 (719)
T ss_pred HHHHHHHHHHHhcCC
Confidence 344444444444444
No 361
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=31.27 E-value=9.4e+02 Score=28.40 Aligned_cols=9 Identities=67% Similarity=0.899 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 006828 388 LHKEIGELR 396 (629)
Q Consensus 388 l~~el~~l~ 396 (629)
|..++.+++
T Consensus 305 L~N~i~eLk 313 (670)
T KOG0239|consen 305 LHNEILELK 313 (670)
T ss_pred HHHHHHHhh
Confidence 333333333
No 362
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=31.20 E-value=1.1e+02 Score=26.79 Aligned_cols=33 Identities=24% Similarity=0.338 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006828 471 KTRNERETLVDLRKKMESHIGLLAEEKELMQKN 503 (629)
Q Consensus 471 evkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~ 503 (629)
.|+++.+-|..|+.||+++.+.|+.|...+...
T Consensus 64 AVREEVe~Lk~qI~eL~er~~~Le~EN~lLk~~ 96 (123)
T KOG4797|consen 64 AVREEVEVLKEQIRELEERNSALERENSLLKTL 96 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 478899999999999999999999987766543
No 363
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=31.08 E-value=5.7e+02 Score=25.86 Aligned_cols=74 Identities=16% Similarity=0.186 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-------------HHHHHHHH-------HHHHHHHhhcc--chHHHH
Q 006828 472 TRNERETLVDLRKKMESHIGLLAEEKELMQKNL-------------LEAKRNAD-------DLRAKMESIGF--NSDRAL 529 (629)
Q Consensus 472 vkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l-------------~~~~k~i~-------~Lk~~I~~lg~--vaiee~ 529 (629)
..+-..||....+.|..++..++.+++++.... ..+...+. .|..-++.|-+ +..+..
T Consensus 120 k~e~~~wl~~~Id~L~~QiE~~E~E~E~L~~~~kKkk~~~~~~~r~~~l~~~ierhk~Hi~kLE~lLR~L~N~~l~~e~V 199 (233)
T PF04065_consen 120 KEEARDWLKDSIDELNRQIEQLEAEIESLSSQKKKKKKDSTKQERIEELESRIERHKFHIEKLELLLRLLDNDELDPEQV 199 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 344566777777777777777777777554321 22233332 22222333322 255667
Q ss_pred HHHHHHHHHHhhhhhh
Q 006828 530 SMLKNTAAMVCQSEND 545 (629)
Q Consensus 530 ~~~ker~~fl~~q~~D 545 (629)
..+++..+++-....|
T Consensus 200 ~~ikedieyYve~n~d 215 (233)
T PF04065_consen 200 EDIKEDIEYYVESNQD 215 (233)
T ss_pred HHHHHHHHHHHHcCCC
Confidence 7788887777665543
No 364
>PRK10698 phage shock protein PspA; Provisional
Probab=31.03 E-value=5.5e+02 Score=25.64 Aligned_cols=125 Identities=13% Similarity=0.198 Sum_probs=56.5
Q ss_pred hhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHH
Q 006828 369 REKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNELADYKSALDQATLERDNAWKDLDEQRKSG 448 (629)
Q Consensus 369 ~e~~~l~e~~~~~e~el~~l~~el~~l~~~l~~le~~~~~le~ei~~l~~~l~~y~~~le~a~~~~~~~~~~l~~~k~~i 448 (629)
..+......+..++.++......+..+...+..++.++.........+..+.. .+. .+
T Consensus 92 ~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~-------~A~------------a~--- 149 (222)
T PRK10698 92 IEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQ-------AAS------------SS--- 149 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH------------HH---
Confidence 33444455555555555555555555555555555555544444444433332 110 00
Q ss_pred HHHHHHHHHhhhchHHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 006828 449 MDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKKMES-HIGLLAEEKELMQKNLLEAKRNADDLRAKM 518 (629)
Q Consensus 449 ~~Lk~eI~~LG~vN~~AIeEyeevkeRyefL~~Q~~DLe~-~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I 518 (629)
..+...+..+ -...++..|+.+.++.+.+..+-+-... .-.+|..+...+..+ ..+..++..||..+
T Consensus 150 ~~~~~~~~~~--~~~~a~~~f~rmE~ki~~~Ea~aea~~~~~~~~l~~e~~~le~~-~~ve~ELa~LK~~~ 217 (222)
T PRK10698 150 RDVRRQLDSG--KLDEAMARFESFERRIDQMEAEAESHGFGKQKSLDQQFAELKAD-DEISEQLAALKAKM 217 (222)
T ss_pred HHHHHHHhCC--CcchHHHHHHHHHHHHHHHHHHHhHhhccCCCCHHHHHHHhhcc-chHHHHHHHHHHHh
Confidence 1111122211 1234555666666666665555433211 011344444444332 34666666666654
No 365
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=30.45 E-value=7.3e+02 Score=26.92 Aligned_cols=20 Identities=25% Similarity=0.448 Sum_probs=13.3
Q ss_pred CCCcHHHHHhhhhhhHHHhh
Q 006828 41 MEDPSEQIKRLKSLNDLLVH 60 (629)
Q Consensus 41 ~~~~~~~~~~l~~~~~~l~~ 60 (629)
-|.|.+++++|++.=.-|.-
T Consensus 89 ~Es~~~kl~RL~~Ev~EL~e 108 (388)
T PF04912_consen 89 KESPEQKLQRLRREVEELKE 108 (388)
T ss_pred cCCHHHHHHHHHHHHHHHHH
Confidence 45588898888775444443
No 366
>PRK11415 hypothetical protein; Provisional
Probab=30.34 E-value=1.2e+02 Score=24.72 Aligned_cols=59 Identities=14% Similarity=0.220 Sum_probs=32.1
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHh
Q 006828 462 FEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKE-LMQKNLLEAKRNADDLRAKMES 520 (629)
Q Consensus 462 N~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~-~l~~~l~~~~k~i~~Lk~~I~~ 520 (629)
..+.|..+..-..+|..|..++..|..+|..+..... .-...+..++++--.||-+|..
T Consensus 5 ~~d~I~~Lk~~D~~F~~L~~~h~~Ld~~I~~lE~~~~~~~d~~i~~LKk~KL~LKDeI~~ 64 (74)
T PRK11415 5 YRDLISRLKNENPRFMSLFDKHNKLDHEIARKEGSDGRGYNAEVVRMKKQKLQLKDEMLK 64 (74)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhHHHHHH
Confidence 3455666666666666666666666666666555322 1122344555555555555544
No 367
>PF06320 GCN5L1: GCN5-like protein 1 (GCN5L1); InterPro: IPR009395 This family consists of several eukaryotic GCN5-like protein 1 (GCN5L1) sequences. The function of this family is unknown [,].
Probab=30.07 E-value=4.1e+02 Score=23.90 Aligned_cols=71 Identities=15% Similarity=0.155 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccc-----hHH-HHHHHHHHHHHHhhh
Q 006828 472 TRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGFN-----SDR-ALSMLKNTAAMVCQS 542 (629)
Q Consensus 472 vkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~lg~v-----aie-e~~~~ker~~fl~~q 542 (629)
++.+...+..-...|+.+...|......+.+.-..+-.-+..+...++++|.| .|| .+..+-+...++...
T Consensus 38 ln~~v~~~~~Nqk~ie~e~k~L~~~~~~l~kqt~qw~~~~~~~~~~LKEiGDveNWa~~iE~Dl~~i~~~L~~v~~~ 114 (121)
T PF06320_consen 38 LNSRVSEAYENQKKIEKEAKQLQRNTAKLAKQTDQWLKLVDSFNDALKEIGDVENWAEMIERDLRVIEETLRYVYEG 114 (121)
T ss_pred HHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56777777777888888888888888888888889999999999999999998 666 777777777666554
No 368
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=30.07 E-value=3.6e+02 Score=27.44 Aligned_cols=77 Identities=13% Similarity=0.159 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhhhch------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhhHHHHHHHHHHHHHH
Q 006828 446 KSGMDLRLKLSEMEKRF------EEKVEELAKTRNERETLVDLRKKMESHIGLLA--EEKELMQKNLLEAKRNADDLRAK 517 (629)
Q Consensus 446 ~~i~~Lk~eI~~LG~vN------~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~--~e~~~l~~~l~~~~k~i~~Lk~~ 517 (629)
.....+-..|..+|.|. .+.-++|-.+..|...+..+.+.|.+-+..-. .++-.+...+...+.+|+.++.+
T Consensus 105 ~~~~~~l~~l~~~g~v~~~~~~~~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~ 184 (262)
T PF14257_consen 105 DKFDSFLDELSELGKVTSRNISSEDVTEQYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQ 184 (262)
T ss_pred HHHHHHHHHHhccCceeeeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666677888776 34456777777777777777666666554211 11334444444445555555544
Q ss_pred HHhhc
Q 006828 518 MESIG 522 (629)
Q Consensus 518 I~~lg 522 (629)
+..|.
T Consensus 185 ~~~l~ 189 (262)
T PF14257_consen 185 LKYLD 189 (262)
T ss_pred HHHHH
Confidence 44443
No 369
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=29.80 E-value=5.4e+02 Score=25.14 Aligned_cols=14 Identities=21% Similarity=0.093 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 006828 346 ISHRLEKAVVVLDD 359 (629)
Q Consensus 346 le~~i~el~~el~~ 359 (629)
..........++.+
T Consensus 128 a~~~a~~AQ~el~e 141 (188)
T PF05335_consen 128 AEQVAEGAQQELAE 141 (188)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 370
>PF14282 FlxA: FlxA-like protein
Probab=28.91 E-value=3.1e+02 Score=24.01 Aligned_cols=56 Identities=14% Similarity=0.261 Sum_probs=39.1
Q ss_pred cHHHHHHHHHHHHHHHHHhhhchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 440 DLDEQRKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKE 498 (629)
Q Consensus 440 ~l~~~k~~i~~Lk~eI~~LG~vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~ 498 (629)
.+..+.+.+..|..+|..|..-.....++. .....-|..|+..|..+|..+..+..
T Consensus 20 ~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k---~~q~q~Lq~QI~~LqaQI~qlq~q~~ 75 (106)
T PF14282_consen 20 QIEQLQKQIKQLQEQLQELSQDSDLDAEQK---QQQIQLLQAQIQQLQAQIAQLQSQQA 75 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788888888888888888533333333 46667777778888888777776544
No 371
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=28.67 E-value=6.7e+02 Score=25.91 Aligned_cols=56 Identities=14% Similarity=0.224 Sum_probs=28.3
Q ss_pred HHHhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 366 KLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNELA 421 (629)
Q Consensus 366 el~~e~~~l~e~~~~~e~el~~l~~el~~l~~~l~~le~~~~~le~ei~~l~~~l~ 421 (629)
....+...+.+.+...+.++.+++..+......+..++.+-.++...+.-+..++.
T Consensus 204 ~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~ 259 (269)
T PF05278_consen 204 LKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVE 259 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444455555555555555555555555555555555555444444443
No 372
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=28.54 E-value=6.6e+02 Score=25.81 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=9.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 383 NEISGLHKEIGELRDVVFKLKASC 406 (629)
Q Consensus 383 ~el~~l~~el~~l~~~l~~le~~~ 406 (629)
.++...+..++.+.+.+..|+.++
T Consensus 193 kei~~~re~i~el~e~I~~L~~eV 216 (258)
T PF15397_consen 193 KEIVQFREEIDELEEEIPQLRAEV 216 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444433333
No 373
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=28.35 E-value=3.4e+02 Score=24.08 Aligned_cols=48 Identities=19% Similarity=0.199 Sum_probs=24.0
Q ss_pred HHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 374 IEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNELA 421 (629)
Q Consensus 374 l~e~~~~~e~el~~l~~el~~l~~~l~~le~~~~~le~ei~~l~~~l~ 421 (629)
+-+.+..++..+..+..++..|+..+..+-.+=..+..+..++..++.
T Consensus 6 lfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~ 53 (110)
T PRK13169 6 IFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLE 53 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444445555555555555554444455555555555554
No 374
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=28.10 E-value=8.5e+02 Score=26.90 Aligned_cols=11 Identities=18% Similarity=0.320 Sum_probs=4.1
Q ss_pred HHHHHHHHHcc
Q 006828 568 AEFQAIVNAFR 578 (629)
Q Consensus 568 ~~f~~i~~~F~ 578 (629)
.........|.
T Consensus 383 ~e~~~k~~~~~ 393 (447)
T KOG2751|consen 383 DELEKKDTSFN 393 (447)
T ss_pred HHHHhcCcccC
Confidence 33333333333
No 375
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=28.02 E-value=3.2e+02 Score=21.91 Aligned_cols=54 Identities=9% Similarity=0.165 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhc
Q 006828 469 LAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIG 522 (629)
Q Consensus 469 yeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~lg 522 (629)
++.+=.+|+.|...-.-|..+...+..|-..+.+....+..+|..+-..+.+|.
T Consensus 9 le~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~le 62 (65)
T TIGR02449 9 VEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 444555666666666777777777777777777777788888888777777654
No 376
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=27.96 E-value=7.6e+02 Score=26.31 Aligned_cols=22 Identities=9% Similarity=0.131 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHH
Q 006828 196 ERNLRSEILVLQSDYGRLKKEK 217 (629)
Q Consensus 196 ~~~le~q~~~l~~e~~~L~~E~ 217 (629)
+.....++..++.++....-.+
T Consensus 10 L~et~~~V~~m~~~L~~~~~~L 31 (344)
T PF12777_consen 10 LKETEEQVEEMQEELEEKQPEL 31 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443333
No 377
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=27.24 E-value=3.9e+02 Score=22.67 Aligned_cols=39 Identities=15% Similarity=0.280 Sum_probs=15.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 382 DNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNEL 420 (629)
Q Consensus 382 e~el~~l~~el~~l~~~l~~le~~~~~le~ei~~l~~~l 420 (629)
+.++..+......|-.++.+....+.+++.-...+..+|
T Consensus 38 e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL 76 (89)
T PF13747_consen 38 EEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRL 76 (89)
T ss_pred HHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444444433333
No 378
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=26.97 E-value=9.7e+02 Score=27.19 Aligned_cols=32 Identities=9% Similarity=-0.033 Sum_probs=19.9
Q ss_pred hhhhhhHHHHHHHHHHHHhHHHhHHHHHHHHH
Q 006828 131 EEKNERENEIIALKSEVSGLMGNIENERERLS 162 (629)
Q Consensus 131 ~~~~~Rk~Ei~~L~eela~l~~~~~~~ke~l~ 162 (629)
.||-+....++.|..++......+..++..-.
T Consensus 295 ril~sstes~e~L~qqV~qs~EKIa~LEqEKE 326 (518)
T PF10212_consen 295 RILLSSTESREGLAQQVQQSQEKIAKLEQEKE 326 (518)
T ss_pred HHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666667777777776666666655554433
No 379
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=26.66 E-value=1.2e+03 Score=27.97 Aligned_cols=51 Identities=20% Similarity=0.171 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHH
Q 006828 351 EKAVVVLDDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFK 401 (629)
Q Consensus 351 ~el~~el~~l~~~leel~~e~~~l~e~~~~~e~el~~l~~el~~l~~~l~~ 401 (629)
.++-..+..++-.++....+-..|.-.++..++++..|++-...|.....+
T Consensus 504 ~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sma~ 554 (861)
T PF15254_consen 504 EEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQNSMAK 554 (861)
T ss_pred HHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444445555555555555555444444444333
No 380
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=26.45 E-value=4.4e+02 Score=23.07 Aligned_cols=41 Identities=15% Similarity=0.149 Sum_probs=17.9
Q ss_pred hHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 372 NDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDK 412 (629)
Q Consensus 372 ~~l~e~~~~~e~el~~l~~el~~l~~~l~~le~~~~~le~e 412 (629)
..|.+.+...+..+..+..+++.|.=...+|...+..+..+
T Consensus 29 ~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~E 69 (102)
T PF10205_consen 29 AELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEE 69 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444443333333333
No 381
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.96 E-value=1.6e+02 Score=26.32 Aligned_cols=44 Identities=16% Similarity=0.180 Sum_probs=28.8
Q ss_pred hHhhhcchhhhhhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHH
Q 006828 122 MKEMGEGLDEEKNERENEIIALKSEVSGLMGNIENERERLSQACR 166 (629)
Q Consensus 122 ~~~~~~~vd~~~~~Rk~Ei~~L~eela~l~~~~~~~ke~l~~L~~ 166 (629)
...|+.||++++ .|..-+..|.+....+..--...+..-.++++
T Consensus 42 v~IMr~NV~KVl-ER~ekL~~L~drad~L~~~as~F~~~A~klkr 85 (116)
T KOG0860|consen 42 VDIMRENVEKVL-ERGEKLDELDDRADQLQAGASQFEKTAVKLKR 85 (116)
T ss_pred HHHHHHhHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999998 46666777777776666655544444444443
No 382
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=25.95 E-value=2.8e+02 Score=21.85 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=10.7
Q ss_pred HHHHHHHHHHhHHHhHHHHHHHH
Q 006828 139 EIIALKSEVSGLMGNIENERERL 161 (629)
Q Consensus 139 Ei~~L~eela~l~~~~~~~ke~l 161 (629)
|+..|..+++.+...+......|
T Consensus 5 E~~rL~Kel~kl~~~i~~~~~kL 27 (66)
T PF10458_consen 5 EIERLEKELEKLEKEIERLEKKL 27 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555544444444433
No 383
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=25.82 E-value=9.2e+02 Score=26.57 Aligned_cols=35 Identities=17% Similarity=0.339 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 006828 180 KEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLK 214 (629)
Q Consensus 180 ~~l~~l~~~l~ele~~~~~le~q~~~l~~e~~~L~ 214 (629)
..+..+.+.+.++..++-..-.+-..+..++....
T Consensus 173 ee~kqlEe~ieeL~qsl~kd~~~~~~l~~e~n~~k 207 (446)
T KOG4438|consen 173 EEVKQLEENIEELNQSLLKDFNQQMSLLAEYNKMK 207 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444455454444444444444444444433
No 384
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=25.70 E-value=4.2e+02 Score=27.20 Aligned_cols=25 Identities=8% Similarity=0.105 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 183 SRLKDRLIEMEGKERNLRSEILVLQ 207 (629)
Q Consensus 183 ~~l~~~l~ele~~~~~le~q~~~l~ 207 (629)
..+..++..+++++..+..++.++.
T Consensus 64 ~~lq~ev~~LrG~~E~~~~~l~~~~ 88 (263)
T PRK10803 64 SDNQSDIDSLRGQIQENQYQLNQVV 88 (263)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 385
>PRK10698 phage shock protein PspA; Provisional
Probab=25.39 E-value=6.9e+02 Score=24.94 Aligned_cols=43 Identities=21% Similarity=0.312 Sum_probs=19.3
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 373 DIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQ 415 (629)
Q Consensus 373 ~l~e~~~~~e~el~~l~~el~~l~~~l~~le~~~~~le~ei~~ 415 (629)
.+...+......+..+...+..|...+...+.+..-+-.....
T Consensus 103 ~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~ 145 (222)
T PRK10698 103 TLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQA 145 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444443333
No 386
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=25.25 E-value=7.3e+02 Score=25.20 Aligned_cols=39 Identities=5% Similarity=-0.091 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHH
Q 006828 250 LKIKVIVKEKNAIEMQNSEQKVINDELEKEVNKLNEIVL 288 (629)
Q Consensus 250 ~~ie~l~~el~ele~~~e~l~~el~ele~ela~l~e~l~ 288 (629)
.++..+...+-.....+..+..+....+.-...+...+.
T Consensus 99 ~qvNaWDr~LI~ngekI~~Ly~e~~~vk~~qkrLdq~L~ 137 (254)
T KOG2196|consen 99 TQVNAWDRTLIENGEKISGLYNEVVKVKLDQKRLDQELE 137 (254)
T ss_pred HHHhHHHHHHHhCcHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 333344443333333333333333333333333333333
No 387
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=24.99 E-value=2e+02 Score=25.67 Aligned_cols=43 Identities=21% Similarity=0.314 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 006828 477 ETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKME 519 (629)
Q Consensus 477 efL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~ 519 (629)
++|..+...|.+.+..+..++..+...+.....+++.++.+++
T Consensus 76 ~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~k 118 (118)
T PF13815_consen 76 EYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKESK 118 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 388
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=24.68 E-value=5.5e+02 Score=23.55 Aligned_cols=28 Identities=18% Similarity=0.259 Sum_probs=15.0
Q ss_pred HHHHHHHHccchhHhHHHHHHHHHHHhh
Q 006828 569 EFQAIVNAFRNREKLVEDMKHRVELMQN 596 (629)
Q Consensus 569 ~f~~i~~~F~~~~~~~~~~~~~~~~~~~ 596 (629)
.=+.|...|-+.+.-|++.-+++-..+.
T Consensus 111 eSe~lae~fl~g~~d~~~Fl~~f~~~R~ 138 (150)
T PF07200_consen 111 ESEELAEEFLDGEIDVDDFLKQFKEKRK 138 (150)
T ss_dssp HHHHHC-S-SSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 3345666666666667766665544443
No 389
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=24.16 E-value=6.9e+02 Score=24.52 Aligned_cols=49 Identities=14% Similarity=0.110 Sum_probs=34.2
Q ss_pred chhhhhhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhhhhhH
Q 006828 128 GLDEEKNERENEIIALKSEVSGLMGNIENERERLSQACREKDLMKGELD 176 (629)
Q Consensus 128 ~vd~~~~~Rk~Ei~~L~eela~l~~~~~~~ke~l~~L~~~~~~l~~~l~ 176 (629)
..|......+..+..|...+..+......+-.....+-.....+...+.
T Consensus 21 e~D~~F~~~~~~~~~le~~Lk~l~~~~~~l~~~~~~l~~~~~e~~~~~~ 69 (236)
T PF09325_consen 21 EPDEWFEEIKDYVDKLEEQLKKLYKSLERLVKRRQELASALAEFGSSFS 69 (236)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466677777788888888888877777777776666666665555444
No 390
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=24.01 E-value=4.4e+02 Score=22.25 Aligned_cols=18 Identities=17% Similarity=0.410 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006828 186 KDRLIEMEGKERNLRSEI 203 (629)
Q Consensus 186 ~~~l~ele~~~~~le~q~ 203 (629)
...+..+..++..+..++
T Consensus 11 ~~~l~~~~~q~~~l~~~~ 28 (106)
T PF01920_consen 11 NQQLQQLEQQIQQLERQL 28 (106)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 391
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=23.99 E-value=7.8e+02 Score=25.09 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=10.4
Q ss_pred HHHHHHhHHHhHHHHHHHHHHHHHHH
Q 006828 143 LKSEVSGLMGNIENERERLSQACREK 168 (629)
Q Consensus 143 L~eela~l~~~~~~~ke~l~~L~~~~ 168 (629)
|..++..+...+...++-..+|+..+
T Consensus 4 lq~~l~~l~~~~~~~~~L~~kLE~DL 29 (248)
T PF08172_consen 4 LQKELSELEAKLEEQKELNAKLENDL 29 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444443333333443333
No 392
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=23.62 E-value=3.3e+02 Score=21.20 Aligned_cols=11 Identities=9% Similarity=0.332 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 006828 485 KMESHIGLLAE 495 (629)
Q Consensus 485 DLe~~~~~L~~ 495 (629)
.|...+..|..
T Consensus 44 ~L~~~~~~L~~ 54 (64)
T PF00170_consen 44 ELKKELEQLKK 54 (64)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 393
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=23.60 E-value=6.7e+02 Score=24.21 Aligned_cols=66 Identities=17% Similarity=0.149 Sum_probs=44.2
Q ss_pred hhhchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhcc
Q 006828 458 MEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGF 523 (629)
Q Consensus 458 LG~vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~lg~ 523 (629)
|..+|+-+-++..+|-++.-.+....++|+..+..+-..+..-++.-+...+.+..++..|..|..
T Consensus 63 Le~lNlPSr~DiarvA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~ 128 (189)
T TIGR02132 63 LEQVNVPTKEDIANVASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDK 128 (189)
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHH
Confidence 345777777777777777777777777777777766555554444455666666666666666653
No 394
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=23.60 E-value=5.4e+02 Score=26.38 Aligned_cols=22 Identities=18% Similarity=0.329 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 006828 301 ILELENSCSEAMDEKLEMVLEI 322 (629)
Q Consensus 301 i~~le~~l~~~~~~~~~l~~ei 322 (629)
++.+.-++..+.++..++-.++
T Consensus 77 ~E~~~~~l~~~~~rq~~~y~dl 98 (263)
T PRK10803 77 IQENQYQLNQVVERQKQIYLQI 98 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443333
No 395
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=23.31 E-value=7.3e+02 Score=24.53 Aligned_cols=15 Identities=0% Similarity=-0.020 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHH
Q 006828 525 SDRALSMLKNTAAMV 539 (629)
Q Consensus 525 aiee~~~~ker~~fl 539 (629)
|...|+++.+|.+-+
T Consensus 164 a~~~fer~e~ki~~~ 178 (219)
T TIGR02977 164 AMARFEQYERRVDEL 178 (219)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888999998884433
No 396
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=23.19 E-value=7.6e+02 Score=25.39 Aligned_cols=52 Identities=15% Similarity=0.132 Sum_probs=36.7
Q ss_pred HHHHHHHHhhhchH--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006828 450 DLRLKLSEMEKRFE--EKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQ 501 (629)
Q Consensus 450 ~Lk~eI~~LG~vN~--~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~ 501 (629)
.|=..+..|=.|-+ ++.+.|..+..+|..+......|+.++..-+.+++.+.
T Consensus 161 vLL~~ae~L~~vYP~~ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n 214 (259)
T PF08657_consen 161 VLLRGAEKLCNVYPLPGAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMN 214 (259)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444544543 88888888888888888888888888887777666553
No 397
>PF12534 DUF3733: Leucine-rich repeat containing protein 8 ; InterPro: IPR021040 This entry represents a conserved domain, approximately 60 amino acids in length, found in a number of eukaryotic protein; mostly as a duplicated N-terminal domain in proteins having a C-terminal leucine-rich repeat domain (PF00560 from PFAM). Each domain contains two completely conserved residues (W and Y) that may be functionally important. Most of the proteins in this entry are annotated as leucine-rich repeat containing protein 8, but beyond that there is little known about their function.
Probab=22.87 E-value=49 Score=26.44 Aligned_cols=24 Identities=29% Similarity=0.304 Sum_probs=19.9
Q ss_pred hhhhhccchhhhhhhhhhHHHHHh
Q 006828 96 ELSGESDQKVSLEIEKGLFCVFLM 119 (629)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~ 119 (629)
|+.+..+..+..++-+|||.||..
T Consensus 6 e~~q~~~~q~~y~~lkPWwdvf~~ 29 (65)
T PF12534_consen 6 ELQQYSENQPCYRILKPWWDVFFD 29 (65)
T ss_pred HHHHHHhhHHHHHHHccHHHHHHH
Confidence 556677888999999999999954
No 398
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=22.55 E-value=8.6e+02 Score=25.08 Aligned_cols=73 Identities=10% Similarity=0.199 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 346 ISHRLEKAVVVLDDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVN 418 (629)
Q Consensus 346 le~~i~el~~el~~l~~~leel~~e~~~l~e~~~~~e~el~~l~~el~~l~~~l~~le~~~~~le~ei~~l~~ 418 (629)
+...|..+..++......+...-.....|...+.....+++.+++.+..|..-.-..-.++.+++.++..+-.
T Consensus 110 lk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqkly~ 182 (338)
T KOG3647|consen 110 LKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQKLYQ 182 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555555555666666666666666666665555444444555555555544433
No 399
>PF08687 ASD2: Apx/Shroom domain ASD2; InterPro: IPR014799 Cell shape changes require the coordination of actin and microtubule cytoskeletons. The Shroom family is a small group of related proteins that are defined by sequence similarity and in most cases by some link to the actin cytoskeleton. The Shroom (Shrm) protein family is found only in animals. Proteins of this family are predicted to be utilised in multiple morphogenic and developmental processes across animal phyla to regulate cells shape or intracellular architecture in an actin and myosin-dependent manner []. While the founding member of the Shrm family is Shrm1 (formerly Apx), it appears that this protein is found only in Xenopus []. In mice and humans, the Shrm family of proteins consists of: Shrm2 (formerly Apxl), a protein involved in the morphogenesis, maintenance, and/or function of vascular endothelial cells. Shrm3 (formerly Shroom), a protein necessary for neural tube closure in vertebrate development as deficiency in Shrm results in spina bifida. Shrm3 is also conserved in some invertebrates, as orthologues can be found in sea urchins. Shrm4, a regulator of cyto-skeletal architecture that may play an important role in vertebrate development. It is implicated in X-linked mental retardation in humans. This protein family is based on the conservation of a specific arrangement of an N-terminal PDZ domain, a centrally positioned sequence motif termed ASD1 (Apx/Shrm Domain 1) and a C-terminal motif termed ASD2 [, , ]. Shrm2 and Shrm3 contain all three domains, while Shrm4 contains the PDZ and ASD2 domains, but lacks a discernible ASD1 element. To date, the ASD1 and ASD2 elements have only been found in Shrm-related proteins and do not appear in combination with other conserved domains. ASD1 is required for targeting actin, while ASD2 is capable of eliciting an actomyosin based constriction event [, ]. ASD2 is the most highly conserved sequence element shared by Shrm1, Shrm2, Shrm3, and Shrm4. It possesses a well conserved series of leucine residues that exhibit spacing consistent with that of a leucine zipper motif []. Shroom2 is both necessary and sufficient to govern the localization of pigment granules at the apical surface of epithelial cells. Shroom2 is a central regulator of RPE pigmentation. Despite their diverse biological roles, Shroom family proteins share a common activity. Since the locus encoding human SHROOM2 lies within the critical region for two distinct forms of ocular albinism, it is possible that SHROOM2 mutations may contribute to human visual system disorders [].; GO: 0000902 cell morphogenesis, 0005737 cytoplasm; PDB: 3THF_B.
Probab=22.49 E-value=8.7e+02 Score=25.07 Aligned_cols=60 Identities=12% Similarity=0.099 Sum_probs=43.5
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHhhhhhh-HhhhhHhH
Q 006828 494 AEEKELMQKNLLEAKRNADDLRAKMESIGFN-SDRALSMLKNTAAMVCQSEND-IDGQQELV 553 (629)
Q Consensus 494 ~~e~~~l~~~l~~~~k~i~~Lk~~I~~lg~v-aiee~~~~ker~~fl~~q~~D-~~ak~~l~ 553 (629)
=++++.+..=+=.+.+++....+.+..+|+. +-+|-.-+.+|+..|+.|++| -.-|+.+.
T Consensus 146 i~Dl~kv~~LLLsLs~RLaRve~aL~~~~~~~~~~Er~~L~~k~~~L~~Q~edAk~LKe~~d 207 (264)
T PF08687_consen 146 IGDLEKVVNLLLSLSGRLARVENALSSLDEDADPEERESLLEKRRLLQRQLEDAKELKENLD 207 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444456777899999999999987 558999999999999999998 77666653
No 400
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=22.31 E-value=4.5e+02 Score=24.55 Aligned_cols=58 Identities=14% Similarity=0.097 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhcc
Q 006828 466 VEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGF 523 (629)
Q Consensus 466 IeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~lg~ 523 (629)
.-.|+.+-.+.-+|..|......++..|+.++..+...+......+..|+..+..+..
T Consensus 19 ~~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~ 76 (160)
T PF13094_consen 19 SFDYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALER 76 (160)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777777777777777777777777777776667777776666666554
No 401
>PF15219 TEX12: Testis-expressed 12
Probab=22.24 E-value=4.9e+02 Score=22.27 Aligned_cols=63 Identities=22% Similarity=0.263 Sum_probs=42.4
Q ss_pred HHHHHHHHHhhhhhhhhHHHhhhhhccchhhhhhhhhhHHHHHhhHhHhhhcchhhhhhhhHHHHHHHHHHHHhHHHhHH
Q 006828 76 KAALEAELSLFGVEKSELLAELSGESDQKVSLEIEKGLFCVFLMTQMKEMGEGLDEEKNERENEIIALKSEVSGLMGNIE 155 (629)
Q Consensus 76 ~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~Rk~Ei~~L~eela~l~~~~~ 155 (629)
-++||+-|..-++|+.-+-.-|+++-.++-++.- +-..+++.|+.++..+..++.
T Consensus 27 ~e~lek~l~d~skEinlmls~yA~ilSEraavd~-------------------------syi~eiD~lfkEA~~lEnfLk 81 (100)
T PF15219_consen 27 DESLEKDLNDMSKEINLMLSTYAKILSERAAVDA-------------------------SYITEIDGLFKEANALENFLK 81 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhh-------------------------hhhHHHHHHHHHHHHHHHHHH
Confidence 3566666777777777776666666555443332 234578899999999999887
Q ss_pred HHHHHHHH
Q 006828 156 NERERLSQ 163 (629)
Q Consensus 156 ~~ke~l~~ 163 (629)
.+++.|.+
T Consensus 82 qkre~LrQ 89 (100)
T PF15219_consen 82 QKRECLRQ 89 (100)
T ss_pred HHHHHHHH
Confidence 77766544
No 402
>smart00338 BRLZ basic region leucin zipper.
Probab=21.92 E-value=3e+02 Score=21.42 Aligned_cols=30 Identities=23% Similarity=0.450 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 006828 485 KMESHIGLLAEEKELMQKNLLEAKRNADDL 514 (629)
Q Consensus 485 DLe~~~~~L~~e~~~l~~~l~~~~k~i~~L 514 (629)
+|+.++..|..+...|...+..+...+..|
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~l~~e~~~l 59 (65)
T smart00338 30 ELERKVEQLEAENERLKKEIERLRRELEKL 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 403
>PF02355 SecD_SecF: Protein export membrane protein; InterPro: IPR022813 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The SecD and SecF equivalents of the Gram-positive bacterium Bacillus subtilis are jointly present in one polypeptide, denoted SecDF, that is required to maintain a high capacity for protein secretion. Unlike the SecD subunit of the pre-protein translocase of E. coli, SecDF of B. subtilis was not required for the release of a mature secretory protein from the membrane, indicating that SecDF is involved in earlier translocation steps []. Comparison with SecD and SecF proteins from other organisms revealed the presence of 10 conserved regions in SecDF, some of which appear to be important for SecDF function. Interestingly, the SecDF protein of B. subtilis has 12 putative transmembrane domains. Thus, SecDF does not only show sequence similarity but also structural similarity to secondary solute transporters []. This entry represents bacterial SecD and SecF protein export membrane proteins and their archaeal homologues []. It is found in association with PF07549 from PFAM SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC []. SecD and SecF are required to maintain a proton motive force []. ; PDB: 3AQP_A 2RRN_A 3AQO_B.
Probab=21.81 E-value=1.8e+02 Score=28.23 Aligned_cols=22 Identities=32% Similarity=0.399 Sum_probs=16.3
Q ss_pred ccchh-hhHhhHHHHHHHHHHHH
Q 006828 603 KKSFW-TVVSSATTIFAAASVAY 624 (629)
Q Consensus 603 ~~~~~-~~~~~~~~~~~~~~~~~ 624 (629)
+..+| ++.++.||+++++++.+
T Consensus 129 ~~tl~r~i~t~~ttll~~~~L~~ 151 (189)
T PF02355_consen 129 KQTLSRTIDTSLTTLLAALILFF 151 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677 66689999888886654
No 404
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=21.70 E-value=6.7e+02 Score=23.48 Aligned_cols=59 Identities=20% Similarity=0.181 Sum_probs=30.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 006828 235 GKRLVGLEKETDDLKLKIKVIVKEKNAIEMQNSEQKVINDELEKEVNKLNEIVLALQKE 293 (629)
Q Consensus 235 ~~el~el~~ei~~l~~~ie~l~~el~ele~~~e~l~~el~ele~ela~l~e~l~~l~~~ 293 (629)
.+++..+...|+..+.++.-+.......+.++...-..+++...+-+.|-..+..|-.+
T Consensus 83 RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv~~L~eLv~e 141 (159)
T PF04949_consen 83 RKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLVTRLMELVSE 141 (159)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555554444444444444333
No 405
>KOG2176 consensus Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.58 E-value=1e+03 Score=28.44 Aligned_cols=83 Identities=10% Similarity=0.187 Sum_probs=63.1
Q ss_pred cHHHHHHHHHHHHHHHHHhhhch----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 006828 440 DLDEQRKSGMDLRLKLSEMEKRF----EEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLR 515 (629)
Q Consensus 440 ~l~~~k~~i~~Lk~eI~~LG~vN----~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk 515 (629)
=++.+...+++-..+|+.|-+.+ ..||.|+..|+...+.|+.+..|+..+++..-.++-...+++...+..-.-+-
T Consensus 49 ~~e~Le~~ir~~d~EIE~lcn~hyQdFidsIdEL~~Vr~daq~Lks~vsd~N~rLQ~~g~eLiv~~e~lv~~r~~~rnit 128 (800)
T KOG2176|consen 49 VMEKLENRIRNHDKEIEKLCNFHYQDFIDSIDELLKVRGDAQKLKSQVSDTNRRLQESGKELIVKKEDLVRCRTQSRNIT 128 (800)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 35677778888888888887766 67999999999999999999999999999888877777777765555444444
Q ss_pred HHHHhhc
Q 006828 516 AKMESIG 522 (629)
Q Consensus 516 ~~I~~lg 522 (629)
..|..+-
T Consensus 129 ~ai~~l~ 135 (800)
T KOG2176|consen 129 EAIELLT 135 (800)
T ss_pred HHHHHHH
Confidence 4444433
No 406
>PF14990 DUF4516: Domain of unknown function (DUF4516)
Probab=21.40 E-value=88 Score=23.29 Aligned_cols=18 Identities=33% Similarity=0.427 Sum_probs=13.9
Q ss_pred hhhhHhhHHHHHHHHHHH
Q 006828 606 FWTVVSSATTIFAAASVA 623 (629)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~ 623 (629)
+|...+|.-++||.||++
T Consensus 11 l~~~~~s~~sM~aGA~vV 28 (47)
T PF14990_consen 11 LKSLVASLLSMLAGASVV 28 (47)
T ss_pred HHHHHHHHHHHHhhhHHH
Confidence 466667888899999886
No 407
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=21.27 E-value=1.7e+02 Score=29.94 Aligned_cols=41 Identities=24% Similarity=0.358 Sum_probs=34.1
Q ss_pred HHHHhhhhhhHHHhhHhHHHHHHhHHHHHHHHHHHHHHHhh
Q 006828 46 EQIKRLKSLNDLLVHRSHEQRQQVESLSQAKAALEAELSLF 86 (629)
Q Consensus 46 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (629)
--+..|+.||+.|+.+..+.=.+...+.+.|+.|.++|+--
T Consensus 219 Mt~~EL~qL~~~L~~qIq~vfeeLt~~vQEKDsLaSElhVR 259 (285)
T PF06937_consen 219 MTLDELKQLNEKLLQQIQDVFEELTQQVQEKDSLASELHVR 259 (285)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677999999999999888888888888888888888644
No 408
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=21.22 E-value=8.9e+02 Score=24.70 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 301 ILELENSCSEAMDEKLEMVLEIKAL 325 (629)
Q Consensus 301 i~~le~~l~~~~~~~~~l~~ei~~l 325 (629)
..+|+.++......+..+..+++.+
T Consensus 95 n~ELE~elr~~~~~~~~L~~Ev~~L 119 (248)
T PF08172_consen 95 NAELEEELRKQQQTISSLRREVESL 119 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444433333333333333333
No 409
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=21.19 E-value=1.9e+02 Score=27.71 Aligned_cols=41 Identities=20% Similarity=0.377 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 006828 474 NERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKM 518 (629)
Q Consensus 474 eRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I 518 (629)
.+|+...+...=|+..| +|++.|....+.++.++.+||.++
T Consensus 7 sklN~AIERnalLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 7 SKLNQAIERNALLESEL----DEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHCH--------------
T ss_pred HHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444 445555555556666666666555
No 410
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=20.77 E-value=1.5e+02 Score=26.34 Aligned_cols=30 Identities=10% Similarity=0.160 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHhhHhHHHH
Q 006828 358 DDKEGEIAKLLREKNDIEERKVCQDNEISG 387 (629)
Q Consensus 358 ~~l~~~leel~~e~~~l~e~~~~~e~el~~ 387 (629)
..+...++-+.....+|...+..++..+..
T Consensus 74 ~~ld~~L~~ie~qQ~eLe~~L~~lE~~~~~ 103 (116)
T PF05064_consen 74 KRLDQELDFIEAQQKELEELLDPLEKQVEK 103 (116)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHCCCCCTT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444433
No 411
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=20.67 E-value=7.5e+02 Score=23.62 Aligned_cols=23 Identities=9% Similarity=0.180 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 006828 476 RETLVDLRKKMESHIGLLAEEKE 498 (629)
Q Consensus 476 yefL~~Q~~DLe~~~~~L~~e~~ 498 (629)
+++++++.+.|+.....+....+
T Consensus 43 qd~itk~veeLe~~~~q~~~~~s 65 (165)
T PF09602_consen 43 QDWITKQVEELEKELKQFKREFS 65 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555554444433
No 412
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=20.52 E-value=7.9e+02 Score=23.85 Aligned_cols=108 Identities=19% Similarity=0.233 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHhhhchHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 411 DKSKQLVNELA-DYKSALDQATLERDNAWKDLDEQRKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKKMESH 489 (629)
Q Consensus 411 ~ei~~l~~~l~-~y~~~le~a~~~~~~~~~~l~~~k~~i~~Lk~eI~~LG~vN~~AIeEyeevkeRyefL~~Q~~DLe~~ 489 (629)
.+...+..+++ .|..+++.....+.. .+...-+..-.-......+...+...-.+...+..+...+....+.++..
T Consensus 80 ~ERGlLL~rvrde~~~~l~~y~~l~~s---~~~f~~rk~l~~e~~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~ 156 (189)
T PF10211_consen 80 PERGLLLLRVRDEYRMTLDAYQTLYES---SIAFGMRKALQAEQGKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKR 156 (189)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH-HHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Q 006828 490 IGL-LAEEKELMQKNLLEAKRNADDLRAKMESI 521 (629)
Q Consensus 490 ~~~-L~~e~~~l~~~l~~~~k~i~~Lk~~I~~l 521 (629)
... ...+.......+..+++....|+..|+.+
T Consensus 157 ~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l~~~ 189 (189)
T PF10211_consen 157 EEELRQEEEKKHQEEIDFLKKQNQQLKAQLEQI 189 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 413
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=20.29 E-value=8e+02 Score=23.84 Aligned_cols=82 Identities=12% Similarity=0.054 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHhhhchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Q 006828 442 DEQRKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESI 521 (629)
Q Consensus 442 ~~~k~~i~~Lk~eI~~LG~vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~l 521 (629)
..+...+...++.+..+|.-..++-.-.+...+|-+.|.....-|...+.+++-++..++..-+.+...+..+...+.+.
T Consensus 84 qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e~dpqv~~k~~~~~K~~~ea 163 (203)
T KOG3433|consen 84 QELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQETDPQVFEKKVHLEKTMAEA 163 (203)
T ss_pred HHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence 34445555555556666655444444555566666677777777777777777777777776666666666666665555
Q ss_pred cc
Q 006828 522 GF 523 (629)
Q Consensus 522 g~ 523 (629)
.+
T Consensus 164 an 165 (203)
T KOG3433|consen 164 AN 165 (203)
T ss_pred Hh
Confidence 54
No 414
>PRK11546 zraP zinc resistance protein; Provisional
Probab=20.27 E-value=7.1e+02 Score=23.21 Aligned_cols=15 Identities=33% Similarity=0.583 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 006828 385 ISGLHKEIGELRDVV 399 (629)
Q Consensus 385 l~~l~~el~~l~~~l 399 (629)
+..+..++..|...+
T Consensus 91 I~aL~kEI~~Lr~kL 105 (143)
T PRK11546 91 INAVAKEMENLRQSL 105 (143)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444443333
No 415
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=20.26 E-value=6.6e+02 Score=27.70 Aligned_cols=21 Identities=19% Similarity=0.124 Sum_probs=12.4
Q ss_pred cchhhhHh---hHHHHHHHHHHHH
Q 006828 604 KSFWTVVS---SATTIFAAASVAY 624 (629)
Q Consensus 604 ~~~~~~~~---~~~~~~~~~~~~~ 624 (629)
.-+||+-| |+|=+++|+.-.|
T Consensus 378 ~~vh~ln~~~~ai~R~i~Aile~~ 401 (418)
T TIGR00414 378 KYVHTLNGTALAIGRTIVAILENY 401 (418)
T ss_pred EEEEeecCcchHHHHHHHHHHHHc
Confidence 56888764 3333777774433
No 416
>PF15294 Leu_zip: Leucine zipper
Probab=20.18 E-value=9.9e+02 Score=24.85 Aligned_cols=44 Identities=23% Similarity=0.309 Sum_probs=20.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHHHHH
Q 006828 235 GKRLVGLEKETDDLKLKIKVIVKEKNAIEMQNSEQKVINDELEK 278 (629)
Q Consensus 235 ~~el~el~~ei~~l~~~ie~l~~el~ele~~~e~l~~el~ele~ 278 (629)
..++..++.+...++..+..+.......-.+...++..|.+++.
T Consensus 131 ~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 131 NKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555544444444444444444444444443
No 417
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=20.09 E-value=8.8e+02 Score=26.72 Aligned_cols=79 Identities=14% Similarity=0.201 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHhhhchHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHH
Q 006828 444 QRKSGMDLRLKLSEMEKRFEE-KVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKN----LLEAKRNADDLRAKM 518 (629)
Q Consensus 444 ~k~~i~~Lk~eI~~LG~vN~~-AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~----l~~~~k~i~~Lk~~I 518 (629)
++.....++..+..=| ++.. .++++-.+..++-.+..+.++|..+...+-.++...... ...+..+++.++.+|
T Consensus 7 ir~n~~~v~~~l~~R~-~~~~~~vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~ 85 (418)
T TIGR00414 7 LRNNPDLVKESLKARG-LSVDIDLEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEEL 85 (418)
T ss_pred HHhCHHHHHHHHHhcC-CChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHH
Confidence 3334444444444444 2222 356666666666666666666666666555555442211 234444555555555
Q ss_pred Hhhcc
Q 006828 519 ESIGF 523 (629)
Q Consensus 519 ~~lg~ 523 (629)
..+..
T Consensus 86 ~~~~~ 90 (418)
T TIGR00414 86 TELSA 90 (418)
T ss_pred HHHHH
Confidence 55543
No 418
>PF05461 ApoL: Apolipoprotein L; InterPro: IPR008405 Apo L belongs to the high density lipoprotein family that plays a central role in cholesterol transport. The cholesterol content of membranes is important in cellular processes such as modulating gene transcription and signal transduction both in the adult brain and during neurodevelopment. There are six apo L genes located in close proximity to each other on chromosome 22q12 in humans. 22q12 is a confirmed high-susceptibility locus for schizophrenia and close to the region associated with velocardiofacial syndrome that includes symptoms of schizophrenia []. The various functions of apoL are still not entirely clear. Apolipoprotein L-I has been identified as a trypanolytic agent [] and displays similar phylogenetic distribution to the programmed cell death protein Bcl-2 and BH-3 domain-containing proteins, suggesting a possible role in apoptosis [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region
Probab=20.05 E-value=6e+02 Score=26.88 Aligned_cols=46 Identities=17% Similarity=0.377 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHccchhHhHHHHHHHHHHHhhhH-HhhcccchhhhHhhHHH
Q 006828 563 TDQYAAEFQAIVNAFRNREKLVEDMKHRVELMQNSV-EAQKKKSFWTVVSSATT 615 (629)
Q Consensus 563 ~~~f~~~f~~i~~~F~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 615 (629)
.++|...|-.++.. .++--+.+.-+-.-+ .-||+-.+=.+++|.|+
T Consensus 60 ~~~FL~~Fp~~k~~-------Le~~I~kL~~lAd~idk~Hk~~tisnvv~ss~g 106 (313)
T PF05461_consen 60 RERFLKEFPQLKEE-------LEEHIRKLRALADEIDKVHKDCTISNVVGSSTG 106 (313)
T ss_pred HHHHHHHhHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHH
Confidence 55666666665544 455555666666666 77776566666644443
Done!