Query 006828
Match_columns 629
No_of_seqs 290 out of 489
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 10:03:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006828.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006828hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i84_S Smooth muscle myosin he 99.5 2E-14 6.8E-19 174.5 13.3 334 112-466 838-1171(1184)
2 1c1g_A Tropomyosin; contractIl 99.5 2.1E-09 7.1E-14 108.0 44.5 85 336-420 197-281 (284)
3 1i84_S Smooth muscle myosin he 99.2 1.3E-10 4.3E-15 141.3 15.8 21 504-524 1146-1166(1184)
4 3na7_A HP0958; flagellar bioge 97.8 0.0064 2.2E-07 60.9 23.9 153 376-536 32-188 (256)
5 2v71_A Nuclear distribution pr 97.2 0.11 3.7E-06 49.0 22.6 27 237-263 50-76 (189)
6 2v71_A Nuclear distribution pr 97.1 0.13 4.4E-06 48.5 22.1 34 135-168 7-40 (189)
7 2fxo_A Myosin heavy chain, car 97.0 0.056 1.9E-06 48.1 17.9 77 120-196 2-78 (129)
8 2efr_A General control protein 96.7 0.34 1.2E-05 44.2 24.4 90 174-263 36-125 (155)
9 3o0z_A RHO-associated protein 96.4 0.56 1.9E-05 43.1 22.6 91 140-230 8-98 (168)
10 3vkg_A Dynein heavy chain, cyt 96.2 2.1 7.1E-05 56.5 31.3 25 372-396 2080-2104(3245)
11 3vkg_A Dynein heavy chain, cyt 96.0 2.9 9.9E-05 55.2 30.8 13 527-539 2399-2411(3245)
12 2dfs_A Myosin-5A; myosin-V, in 95.6 4.4 0.00015 48.4 28.7 13 105-117 840-852 (1080)
13 2dfs_A Myosin-5A; myosin-V, in 95.0 1.1 3.8E-05 53.5 20.9 29 278-306 1023-1051(1080)
14 3bas_A Myosin heavy chain, str 93.8 0.81 2.8E-05 37.7 11.4 56 119-174 2-57 (89)
15 3swk_A Vimentin; cytoskeleton, 91.1 2.6 9E-05 34.4 10.9 39 464-502 46-84 (86)
16 4gkw_A Spindle assembly abnorm 90.5 8.2 0.00028 33.5 23.9 42 383-424 119-160 (167)
17 3hnw_A Uncharacterized protein 88.8 6.9 0.00024 34.9 12.7 60 463-522 64-123 (138)
18 2w83_C C-JUN-amino-terminal ki 85.8 5.9 0.0002 31.2 9.0 67 456-522 5-71 (77)
19 3swk_A Vimentin; cytoskeleton, 85.6 12 0.0004 30.5 11.3 74 448-521 2-82 (86)
20 3q8t_A Beclin-1; autophagy, AT 83.3 18 0.00063 30.0 14.4 26 236-261 25-50 (96)
21 2v4h_A NF-kappa-B essential mo 83.3 19 0.00066 30.4 11.7 20 228-247 30-49 (110)
22 2eqb_B RAB guanine nucleotide 82.6 18 0.0006 30.1 11.1 77 374-457 17-94 (97)
23 3okq_A BUD site selection prot 82.0 27 0.00092 30.9 13.6 75 470-544 17-107 (141)
24 3ghg_A Fibrinogen alpha chain; 76.8 52 0.0018 35.4 15.2 62 450-512 93-155 (562)
25 2zqm_A Prefoldin beta subunit 75.8 34 0.0012 28.8 11.7 96 394-504 10-107 (117)
26 1w1w_A Structural maintenance 74.3 0.71 2.4E-05 49.3 0.4 54 525-578 226-281 (430)
27 3oja_A Leucine-rich immune mol 74.2 63 0.0022 34.4 16.0 27 342-368 450-476 (487)
28 4h22_A Leucine-rich repeat fli 74.0 38 0.0013 28.3 10.7 59 160-218 17-75 (103)
29 4gkw_A Spindle assembly abnorm 72.5 48 0.0016 28.8 23.5 28 275-302 102-129 (167)
30 2bl0_A Major plasmodial myosin 72.2 1.6 5.5E-05 33.3 1.9 29 96-124 22-62 (63)
31 1fxk_A Prefoldin; archaeal pro 71.6 41 0.0014 27.9 10.9 93 396-503 7-101 (107)
32 2l5b_A Activator of apoptosis 71.6 3.3 0.00011 26.1 2.7 16 605-620 7-22 (32)
33 2e7s_A RAB guanine nucleotide 71.4 20 0.0007 31.6 8.9 7 181-187 47-53 (135)
34 3mov_A Lamin-B1; LMNB1, B-type 71.1 7.6 0.00026 32.3 5.9 73 34-110 4-80 (95)
35 1wdc_A Scallop myosin; calcium 70.3 1.6 5.4E-05 33.5 1.4 29 96-124 24-64 (64)
36 3qh9_A Liprin-beta-2; coiled-c 68.5 39 0.0013 26.9 9.0 55 464-518 23-77 (81)
37 3a7p_A Autophagy protein 16; c 67.5 70 0.0024 28.7 13.4 65 361-425 74-138 (152)
38 2v66_B Nuclear distribution pr 67.2 58 0.002 27.7 16.6 25 141-165 6-30 (111)
39 3htk_A Structural maintenance 67.1 36 0.0012 25.2 8.8 54 467-520 5-58 (60)
40 3i00_A HIP-I, huntingtin-inter 66.3 36 0.0012 29.4 9.4 22 458-479 97-118 (120)
41 3hd7_B Syntaxin-1A; membrane p 66.0 31 0.0011 29.2 8.9 82 527-615 11-93 (109)
42 3cvf_A Homer-3, homer protein 64.9 52 0.0018 26.2 9.4 30 299-328 27-56 (79)
43 2e7s_A RAB guanine nucleotide 61.9 22 0.00076 31.3 7.2 82 464-545 22-114 (135)
44 1fxk_A Prefoldin; archaeal pro 58.9 49 0.0017 27.4 8.9 88 464-562 5-102 (107)
45 3s4r_A Vimentin; alpha-helix, 57.2 79 0.0027 25.9 12.0 28 301-328 58-85 (93)
46 2zqm_A Prefoldin beta subunit 57.1 86 0.0029 26.3 12.0 47 520-566 58-111 (117)
47 1go4_E MAD1 (mitotic arrest de 54.9 56 0.0019 27.2 8.2 34 465-498 10-43 (100)
48 1d7m_A Cortexillin I; coiled-c 51.1 96 0.0033 25.0 15.6 12 347-358 45-56 (101)
49 3s4r_A Vimentin; alpha-helix, 50.4 1E+02 0.0035 25.2 12.6 36 382-417 55-90 (93)
50 3mq7_A Bone marrow stromal ant 50.0 1.2E+02 0.0041 25.8 12.3 15 277-291 45-59 (121)
51 3cve_A Homer protein homolog 1 48.7 94 0.0032 24.2 11.0 29 300-328 22-50 (72)
52 2wt7_B Transcription factor MA 47.8 48 0.0016 27.1 6.5 67 447-521 22-88 (90)
53 3a7p_A Autophagy protein 16; c 44.6 1.7E+02 0.0059 26.1 13.1 46 242-287 74-119 (152)
54 3efg_A Protein SLYX homolog; x 41.7 74 0.0025 25.2 6.7 20 271-290 14-33 (78)
55 2xzr_A Immunoglobulin-binding 41.6 1.4E+02 0.0049 24.3 17.3 14 242-255 19-32 (114)
56 3ghg_B Fibrinogen beta chain; 40.9 1.9E+02 0.0064 30.8 11.5 106 477-595 84-190 (461)
57 3jsv_C NF-kappa-B essential mo 40.0 1.5E+02 0.0053 24.2 10.8 25 304-328 7-31 (94)
58 3efg_A Protein SLYX homolog; x 40.0 78 0.0027 25.1 6.6 43 468-510 15-57 (78)
59 3mtu_A Tropomyosin alpha-1 cha 39.0 80 0.0028 24.8 6.5 49 448-496 4-52 (75)
60 4dzn_A Coiled-coil peptide CC- 36.8 55 0.0019 20.5 4.0 25 497-521 4-28 (33)
61 3iyk_A VP5; icosahedral virus; 36.8 3E+02 0.01 29.4 12.1 130 500-629 95-250 (526)
62 1jcd_A Major outer membrane li 36.1 73 0.0025 23.2 5.3 13 525-537 37-49 (52)
63 1deb_A APC protein, adenomatou 36.1 1.2E+02 0.0041 21.8 6.8 48 475-522 4-51 (54)
64 2i1j_A Moesin; FERM, coiled-co 35.3 94 0.0032 34.2 8.7 12 480-491 517-528 (575)
65 3m91_A Proteasome-associated A 35.2 1.3E+02 0.0043 21.8 6.7 35 488-522 16-50 (51)
66 2i1j_A Moesin; FERM, coiled-co 34.0 84 0.0029 34.6 8.0 18 191-208 339-356 (575)
67 1dn1_B Syntaxin 1A, syntaxin b 34.0 2.7E+02 0.0094 27.1 11.1 70 514-584 149-223 (267)
68 3teq_A Stromal interaction mol 33.4 21 0.00072 29.8 2.3 43 31-73 49-94 (101)
69 1t2k_D Cyclic-AMP-dependent tr 31.2 1.2E+02 0.0042 22.5 6.1 29 472-500 27-55 (61)
70 1gmj_A ATPase inhibitor; coile 31.1 2E+02 0.007 23.0 9.3 57 465-521 21-77 (84)
71 1jcd_A Major outer membrane li 31.0 1.5E+02 0.0052 21.5 7.1 25 185-209 23-47 (52)
72 2zdi_C Prefoldin subunit alpha 30.9 1.9E+02 0.0066 25.5 8.6 103 387-509 6-140 (151)
73 3vp9_A General transcriptional 30.8 1.6E+02 0.0055 24.1 7.1 72 378-459 16-88 (92)
74 1fxk_C Protein (prefoldin); ar 29.9 2.6E+02 0.0089 23.9 12.0 40 469-508 90-129 (133)
75 3ghg_C Fibrinogen gamma chain; 29.2 5.1E+02 0.018 27.0 12.6 102 476-598 26-135 (411)
76 3ter_A Mammalian stromal inter 29.2 24 0.00081 31.1 2.0 45 29-73 78-127 (136)
77 2pnv_A Small conductance calci 29.0 85 0.0029 21.9 4.4 27 478-504 13-39 (43)
78 4aj5_K Spindle and kinetochore 28.9 2.8E+02 0.0095 23.8 9.3 90 486-591 3-98 (123)
79 1zhc_A Hypothetical protein HP 28.7 30 0.001 27.3 2.3 17 442-458 20-36 (76)
80 1ci6_A Transcription factor AT 26.6 1.9E+02 0.0065 21.7 6.5 21 475-495 24-44 (63)
81 3uux_B Mitochondrial division 26.4 4.4E+02 0.015 25.3 11.0 13 48-60 27-39 (242)
82 3m91_A Proteasome-associated A 25.3 1.9E+02 0.0067 20.8 6.4 40 447-486 10-49 (51)
83 3mov_A Lamin-B1; LMNB1, B-type 25.0 2.8E+02 0.0097 22.6 8.5 24 188-211 45-68 (95)
84 3trt_A Vimentin; cytoskeleton, 25.0 2.4E+02 0.0081 21.7 8.8 22 182-203 51-72 (77)
85 3uux_B Mitochondrial division 24.9 4.7E+02 0.016 25.1 11.1 9 56-64 53-61 (242)
86 1x79_B RAB GTPase binding effe 24.6 3.2E+02 0.011 23.1 13.8 27 391-417 78-104 (112)
87 1wt6_A Myotonin-protein kinase 24.6 2.6E+02 0.0091 22.2 9.4 63 161-223 12-74 (81)
88 3q0x_A Centriole protein; cent 24.6 2.2E+02 0.0074 27.3 8.0 57 462-520 161-217 (228)
89 1dip_A Delta-sleep-inducing pe 24.0 34 0.0012 26.6 1.8 31 472-502 13-43 (78)
90 1nkp_B MAX protein, MYC proto- 24.0 2.6E+02 0.0088 21.9 7.3 16 448-463 14-29 (83)
91 1t2k_D Cyclic-AMP-dependent tr 23.3 2.2E+02 0.0075 21.0 6.3 31 485-515 26-56 (61)
92 2hfr_A Fowlicidin-3, cathelici 22.9 14 0.00048 22.4 -0.4 22 605-626 2-23 (27)
93 1m1j_C Fibrinogen gamma chain; 22.9 6.6E+02 0.023 26.1 13.6 101 184-284 24-132 (409)
94 3trt_A Vimentin; cytoskeleton, 22.9 2.6E+02 0.0089 21.5 9.2 41 481-521 35-75 (77)
95 2xdj_A Uncharacterized protein 22.6 2.9E+02 0.01 22.0 10.1 16 301-316 43-58 (83)
96 1wle_A Seryl-tRNA synthetase; 21.7 5.4E+02 0.018 27.6 11.4 84 439-522 41-136 (501)
97 4etp_A Kinesin-like protein KA 21.7 2E+02 0.0068 30.0 7.9 57 468-524 4-61 (403)
98 2wt7_B Transcription factor MA 21.4 3.3E+02 0.011 22.1 9.6 33 444-476 53-85 (90)
99 2wt7_A Proto-oncogene protein 20.9 2.6E+02 0.009 20.8 6.5 40 467-506 23-62 (63)
100 2l5g_B Putative uncharacterize 20.8 1.5E+02 0.0051 20.5 4.2 28 485-512 6-33 (42)
No 1
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=99.53 E-value=2e-14 Score=174.49 Aligned_cols=334 Identities=15% Similarity=0.148 Sum_probs=68.4
Q ss_pred hhHHHHHhhHhHhhhcchhhhhhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 006828 112 GLFCVFLMTQMKEMGEGLDEEKNERENEIIALKSEVSGLMGNIENERERLSQACREKDLMKGELDCQVKEASRLKDRLIE 191 (629)
Q Consensus 112 ~~~~~~~~~~~~~~~~~vd~~~~~Rk~Ei~~L~eela~l~~~~~~~ke~l~~L~~~~~~l~~~l~~~~~~l~~l~~~l~e 191 (629)
+||++|.+.+|........+.+.....++..+...+..+...+..++..+..+..+...+...+......+..+...+
T Consensus 838 ~~~rl~~klkpLl~~a~~~~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l-- 915 (1184)
T 1i84_S 838 PWMXLFFXIXPLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMR-- 915 (1184)
T ss_dssp HHHHHHHHHTTTCCCCTHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 899999999998888777888888888888888888888777777777777776666655554444444444444333
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 006828 192 MEGKERNLRSEILVLQSDYGRLKKEKNERDGDIEAFKKEKGLLGKRLVGLEKETDDLKLKIKVIVKEKNAIEMQNSEQKV 271 (629)
Q Consensus 192 le~~~~~le~q~~~l~~e~~~L~~E~~~l~~~i~~l~~~~~~l~~el~el~~ei~~l~~~ie~l~~el~ele~~~e~l~~ 271 (629)
..+..+...+..++..+..++......+..+...+..+..++..+..+++.+...+..+..++..++..+..+..
T Consensus 916 -----~~l~~~~~~Le~~l~ele~elee~ee~l~el~~e~~~le~el~~L~~eleele~~l~~l~~e~~~le~~l~~l~~ 990 (1184)
T 1i84_S 916 -----VRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMED 990 (1184)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHC------------------------------------------------
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444555555555555555555555555555544444444
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 006828 272 INDELEKEVNKLNEIVLALQKEEKVLCGKILELENSCSEAMDEKLEMVLEIKALLDQEREKQKRIERLIEEKDEISHRLE 351 (629)
Q Consensus 272 el~ele~ela~l~e~l~~l~~~~~~l~~~i~~le~~l~~~~~~~~~l~~ei~~l~~e~~e~~~~l~~l~~e~~~le~~i~ 351 (629)
++..++..+..+...+..+...+..+...+..+..++..+......+..++..+.. .+..+......+...+.
T Consensus 991 el~~lee~l~~l~~e~~~le~~i~~l~~~l~~~e~k~~~lek~~~~le~el~ele~-------~le~~e~~~~ele~~~~ 1063 (1184)
T 1i84_S 991 DILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEV-------RLKKEEKSRQELEKIKR 1063 (1184)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 45444444444444444444443333333333333333333333333333333333 34444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 352 KAVVVLDDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNELADYKSALDQAT 431 (629)
Q Consensus 352 el~~el~~l~~~leel~~e~~~l~e~~~~~e~el~~l~~el~~l~~~l~~le~~~~~le~ei~~l~~~l~~y~~~le~a~ 431 (629)
.+..++..++..+.++..++..+...+..++.++..+...+..+...+..++..+..++.++..+...+......
T Consensus 1064 ~le~el~~l~~el~el~~el~~le~~l~~le~el~~l~~~le~l~~~~~~le~~l~~Le~eie~L~eeLee~~~~----- 1138 (1184)
T 1i84_S 1064 KLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAA----- 1138 (1184)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 455555555555666666666666666666666666666666666666666666666666666665555432221
Q ss_pred HhhhhccccHHHHHHHHHHHHHHHHHhhhchHHhH
Q 006828 432 LERDNAWKDLDEQRKSGMDLRLKLSEMEKRFEEKV 466 (629)
Q Consensus 432 ~~~~~~~~~l~~~k~~i~~Lk~eI~~LG~vN~~AI 466 (629)
...+......+...+..|+..|.++|++|...+
T Consensus 1139 --~~~le~q~~~L~~ele~L~~~Ieel~~vn~aq~ 1171 (1184)
T 1i84_S 1139 --RNKAEKQKRDLSEELEALKTELEDTLDTTATQQ 1171 (1184)
T ss_dssp -----------------------------------
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 222233456778899999999999999986543
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=99.49 E-value=2.1e-09 Score=108.02 Aligned_cols=85 Identities=20% Similarity=0.298 Sum_probs=43.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 336 IERLIEEKDEISHRLEKAVVVLDDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQ 415 (629)
Q Consensus 336 l~~l~~e~~~le~~i~el~~el~~l~~~leel~~e~~~l~e~~~~~e~el~~l~~el~~l~~~l~~le~~~~~le~ei~~ 415 (629)
+..+...+..+...+..+...+..+...+..+......+...+......+..+...+..+...+..+...+.++...+.+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (284)
T 1c1g_A 197 IKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDH 276 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444444555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHH
Q 006828 416 LVNEL 420 (629)
Q Consensus 416 l~~~l 420 (629)
+...|
T Consensus 277 ~~~~L 281 (284)
T 1c1g_A 277 ALNDM 281 (284)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55444
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=99.18 E-value=1.3e-10 Score=141.28 Aligned_cols=21 Identities=10% Similarity=0.101 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhccc
Q 006828 504 LLEAKRNADDLRAKMESIGFN 524 (629)
Q Consensus 504 l~~~~k~i~~Lk~~I~~lg~v 524 (629)
...+..++..|+..|+.+|+|
T Consensus 1146 ~~~L~~ele~L~~~Ieel~~v 1166 (1184)
T 1i84_S 1146 KRDLSEELEALKTELEDTLDT 1166 (1184)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhH
Confidence 334445566666677777876
No 4
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.76 E-value=0.0064 Score=60.94 Aligned_cols=153 Identities=13% Similarity=0.071 Sum_probs=95.8
Q ss_pred HHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHH
Q 006828 376 ERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNELADYKSALDQATLERDNAWKDLDEQRKSGMDLRLKL 455 (629)
Q Consensus 376 e~~~~~e~el~~l~~el~~l~~~l~~le~~~~~le~ei~~l~~~l~~y~~~le~a~~~~~~~~~~l~~~k~~i~~Lk~eI 455 (629)
..+..++..+..+...+..+...+..+...+.+++..+.....++..|...+..+. + ..++..+..++..++..|
T Consensus 32 ~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~----~-~kE~~aL~kEie~~~~~i 106 (256)
T 3na7_A 32 KDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIK----S-ERELRSLNIEEDIAKERS 106 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS----S-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC----C-HHHHHHHHHHHHHHHHHH
Confidence 33334444444444455555555555555555555666666666655555554332 1 356788888888888889
Q ss_pred HHhhhchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccc----hHHHHHH
Q 006828 456 SEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGFN----SDRALSM 531 (629)
Q Consensus 456 ~~LG~vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~lg~v----aiee~~~ 531 (629)
..+........+..+..+..++.+......+...+...+.+++.... .+...+..+..+...+.+. -...|+.
T Consensus 107 ~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~---e~~~e~~~l~~~r~~l~~~i~~~lL~~Yer 183 (256)
T 3na7_A 107 NQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVK---NIKETQQIIFKKKEDLVEKTEPKIYSFYER 183 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 88888888888888888888888888888888877777776554443 3444444444444433332 5556776
Q ss_pred HHHHH
Q 006828 532 LKNTA 536 (629)
Q Consensus 532 ~ker~ 536 (629)
+..++
T Consensus 184 ir~~~ 188 (256)
T 3na7_A 184 IRRWA 188 (256)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 66543
No 5
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.20 E-value=0.11 Score=48.99 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=10.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 237 RLVGLEKETDDLKLKIKVIVKEKNAIE 263 (629)
Q Consensus 237 el~el~~ei~~l~~~ie~l~~el~ele 263 (629)
++..+.+....+...+..+..++..++
T Consensus 50 eL~~~Ek~~~~L~~~~~~L~~E~e~~k 76 (189)
T 2v71_A 50 QLVQAEQRNRDLQADNQRLKYEVEALK 76 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444433333333333
No 6
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.11 E-value=0.13 Score=48.49 Aligned_cols=34 Identities=12% Similarity=0.062 Sum_probs=16.4
Q ss_pred hhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHH
Q 006828 135 ERENEIIALKSEVSGLMGNIENERERLSQACREK 168 (629)
Q Consensus 135 ~Rk~Ei~~L~eela~l~~~~~~~ke~l~~L~~~~ 168 (629)
+...++.-.+..+..+...+..++..+.....--
T Consensus 7 s~~ee~~ywk~~~~~~~q~~~~le~El~EFqesS 40 (189)
T 2v71_A 7 SLKEETAYWKELSMKYKQSFQEARDELVEFQEGS 40 (189)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555554444444444333
No 7
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=97.00 E-value=0.056 Score=48.10 Aligned_cols=77 Identities=10% Similarity=0.112 Sum_probs=52.3
Q ss_pred hHhHhhhcchhhhhhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 006828 120 TQMKEMGEGLDEEKNERENEIIALKSEVSGLMGNIENERERLSQACREKDLMKGELDCQVKEASRLKDRLIEMEGKE 196 (629)
Q Consensus 120 ~~~~~~~~~vd~~~~~Rk~Ei~~L~eela~l~~~~~~~ke~l~~L~~~~~~l~~~l~~~~~~l~~l~~~l~ele~~~ 196 (629)
.+|++...+.+..+..+..++..|...+.........+......+......+...+..-...+....+....+....
T Consensus 2 vKPLL~~~~~e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k 78 (129)
T 2fxo_A 2 SSPLLKSAEREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNK 78 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 36888888888888888888888888888887777777777777777776665555444444444444443333333
No 8
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=96.72 E-value=0.34 Score=44.21 Aligned_cols=90 Identities=13% Similarity=0.183 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 006828 174 ELDCQVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKNERDGDIEAFKKEKGLLGKRLVGLEKETDDLKLKIK 253 (629)
Q Consensus 174 ~l~~~~~~l~~l~~~l~ele~~~~~le~q~~~l~~e~~~L~~E~~~l~~~i~~l~~~~~~l~~el~el~~ei~~l~~~ie 253 (629)
........+..+...+..+..++..++..-.....+-+.+..++..+...+..........+..+..|+..++.+...+.
T Consensus 36 Rae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~ 115 (155)
T 2efr_A 36 RAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELY 115 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHH
Q 006828 254 VIVKEKNAIE 263 (629)
Q Consensus 254 ~l~~el~ele 263 (629)
........+.
T Consensus 116 ~~Kek~~~i~ 125 (155)
T 2efr_A 116 AQKLKYKAIS 125 (155)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4333333333
No 9
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=96.43 E-value=0.56 Score=43.13 Aligned_cols=91 Identities=10% Similarity=0.126 Sum_probs=54.5
Q ss_pred HHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q 006828 140 IIALKSEVSGLMGNIENERERLSQACREKDLMKGELDCQVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKNE 219 (629)
Q Consensus 140 i~~L~eela~l~~~~~~~ke~l~~L~~~~~~l~~~l~~~~~~l~~l~~~l~ele~~~~~le~q~~~l~~e~~~L~~E~~~ 219 (629)
+..|..++.++...+....+...++.+...++......+...+..+.+.+..+......|+.++..+...+..-......
T Consensus 8 i~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q 87 (168)
T 3o0z_A 8 LSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGH 87 (168)
T ss_dssp --CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778888887777777777777777666666666666666666666666666666666666665554443333333
Q ss_pred HHHhHHHHHHH
Q 006828 220 RDGDIEAFKKE 230 (629)
Q Consensus 220 l~~~i~~l~~~ 230 (629)
..+.+.++...
T Consensus 88 ~se~~~elq~r 98 (168)
T 3o0z_A 88 DSEMIGDLQAR 98 (168)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 10
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.22 E-value=2.1 Score=56.54 Aligned_cols=25 Identities=0% Similarity=0.198 Sum_probs=11.2
Q ss_pred hHHHHHHHhhHhHHHHHHHHHHHHH
Q 006828 372 NDIEERKVCQDNEISGLHKEIGELR 396 (629)
Q Consensus 372 ~~l~e~~~~~e~el~~l~~el~~l~ 396 (629)
..|..+...+...+..+..++..+-
T Consensus 2080 ~gL~~Ek~RW~~~~~~l~~~~~~L~ 2104 (3245)
T 3vkg_A 2080 DNLNSERGRWEQQSENFNTQMSTVV 2104 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhccccHHHHHHHHHHHHHhcc
Confidence 3344444444444444444444443
No 11
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.97 E-value=2.9 Score=55.21 Aligned_cols=13 Identities=8% Similarity=0.025 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHH
Q 006828 527 RALSMLKNTAAMV 539 (629)
Q Consensus 527 ee~~~~ker~~fl 539 (629)
+.|.-|..|...|
T Consensus 2399 ~~YrpvA~r~s~L 2411 (3245)
T 3vkg_A 2399 ALYNPMALSCSRV 2411 (3245)
T ss_dssp HHSHHHHHHHHHH
T ss_pred HHhHHHHHHHHHH
Confidence 3455555554433
No 12
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.61 E-value=4.4 Score=48.42 Aligned_cols=13 Identities=8% Similarity=-0.044 Sum_probs=7.7
Q ss_pred hhhhhhhhhHHHH
Q 006828 105 VSLEIEKGLFCVF 117 (629)
Q Consensus 105 ~~~~~~~~~~~~~ 117 (629)
.++..+++||+.+
T Consensus 840 ~aai~IQs~~Rg~ 852 (1080)
T 2dfs_A 840 DATIALQALLRGY 852 (1080)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3455556677666
No 13
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.00 E-value=1.1 Score=53.54 Aligned_cols=29 Identities=24% Similarity=0.273 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 278 KEVNKLNEIVLALQKEEKVLCGKILELEN 306 (629)
Q Consensus 278 ~ela~l~e~l~~l~~~~~~l~~~i~~le~ 306 (629)
..+..|+.+...+..+++.++..+...+.
T Consensus 1023 ~kv~~L~~e~~~L~qq~~~l~~~~~~~~~ 1051 (1080)
T 2dfs_A 1023 QLVSELKEQNTLLKTEKEELNRRIHDQAK 1051 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444554444
No 14
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=93.80 E-value=0.81 Score=37.74 Aligned_cols=56 Identities=13% Similarity=0.022 Sum_probs=40.0
Q ss_pred hhHhHhhhcchhhhhhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhhhh
Q 006828 119 MTQMKEMGEGLDEEKNERENEIIALKSEVSGLMGNIENERERLSQACREKDLMKGE 174 (629)
Q Consensus 119 ~~~~~~~~~~vd~~~~~Rk~Ei~~L~eela~l~~~~~~~ke~l~~L~~~~~~l~~~ 174 (629)
+.+|++.+.+.+..+.....++..+.+.+.........+......+..+...+...
T Consensus 2 kVKPLL~~~~~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 2 SHMPLLSIARQEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999888888888888877777777755444
No 15
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=91.08 E-value=2.6 Score=34.42 Aligned_cols=39 Identities=23% Similarity=0.294 Sum_probs=28.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006828 464 EKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQK 502 (629)
Q Consensus 464 ~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~ 502 (629)
.+..++..++.-.+.+.-.+-||+.++.+|.+|+.-+.+
T Consensus 46 ~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLkk 84 (86)
T 3swk_A 46 EAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKK 84 (86)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344566666667777777888899999998888876654
No 16
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=90.47 E-value=8.2 Score=33.51 Aligned_cols=42 Identities=19% Similarity=0.207 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 383 NEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNELADYK 424 (629)
Q Consensus 383 ~el~~l~~el~~l~~~l~~le~~~~~le~ei~~l~~~l~~y~ 424 (629)
..+--|++++..-.-.....-..+.++..+...+..++.-|.
T Consensus 119 ~TiG~LrKELEdEklK~~E~MdSFE~LkvENE~vkerl~mYR 160 (167)
T 4gkw_A 119 ETIGILRKELENEKLKAAENMDSFEKLSMENENLKEKIAHYR 160 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHH
Confidence 444444444444444444555566666667777666666554
No 17
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=88.79 E-value=6.9 Score=34.87 Aligned_cols=60 Identities=12% Similarity=0.094 Sum_probs=49.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhc
Q 006828 463 EEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIG 522 (629)
Q Consensus 463 ~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~lg 522 (629)
++..++|-..+..++.|..+.+++...+.+|+.++.+.+..+..+.+.+..|+.++..|-
T Consensus 64 LNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~ 123 (138)
T 3hnw_A 64 LNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQ 123 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557788999999999999999988888888888888888888777777777777777664
No 18
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=85.81 E-value=5.9 Score=31.17 Aligned_cols=67 Identities=18% Similarity=0.220 Sum_probs=51.4
Q ss_pred HHhhhchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhc
Q 006828 456 SEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIG 522 (629)
Q Consensus 456 ~~LG~vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~lg 522 (629)
..+|....+.|.|+.++.+-..-|.-.++||..++..|-.+.+.++..+.....-...+...|..+.
T Consensus 5 ~gmgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elE 71 (77)
T 2w83_C 5 EFMGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELE 71 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788888999999999999999999999999998888888887777766666666666655543
No 19
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=85.61 E-value=12 Score=30.50 Aligned_cols=74 Identities=12% Similarity=0.173 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhhhchHHhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 006828 448 GMDLRLKLSEMEKRFEEKVEELAKT-------RNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMES 520 (629)
Q Consensus 448 i~~Lk~eI~~LG~vN~~AIeEyeev-------keRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~ 520 (629)
+..|+.+|..++..|....-+...+ +.+|+.=...+..++..+..|+..++...=....+..++..|+.+|.-
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~f 81 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAF 81 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666665555555544 455555555555555555555555554444445555555565555544
Q ss_pred h
Q 006828 521 I 521 (629)
Q Consensus 521 l 521 (629)
|
T Consensus 82 L 82 (86)
T 3swk_A 82 L 82 (86)
T ss_dssp H
T ss_pred H
Confidence 3
No 20
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=83.29 E-value=18 Score=29.96 Aligned_cols=26 Identities=15% Similarity=0.225 Sum_probs=9.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHH
Q 006828 236 KRLVGLEKETDDLKLKIKVIVKEKNA 261 (629)
Q Consensus 236 ~el~el~~ei~~l~~~ie~l~~el~e 261 (629)
.++..+..+-..+...|..+..+...
T Consensus 25 ~eL~~lEke~~~l~~el~~le~E~~~ 50 (96)
T 3q8t_A 25 QELEDVEKNRKVVAENLEKVQAEAER 50 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 21
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=83.27 E-value=19 Score=30.41 Aligned_cols=20 Identities=15% Similarity=0.174 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHhHHHHHHH
Q 006828 228 KKEKGLLGKRLVGLEKETDD 247 (629)
Q Consensus 228 ~~~~~~l~~el~el~~ei~~ 247 (629)
...+..+++.+.....+++.
T Consensus 30 ~~~L~~AEeaL~~Kq~~ide 49 (110)
T 2v4h_A 30 RQQLQQAEEALVAKQELIDK 49 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 22
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=82.55 E-value=18 Score=30.08 Aligned_cols=77 Identities=14% Similarity=0.179 Sum_probs=42.5
Q ss_pred HHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhccccHHHHHHHHHHHH
Q 006828 374 IEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNELA-DYKSALDQATLERDNAWKDLDEQRKSGMDLR 452 (629)
Q Consensus 374 l~e~~~~~e~el~~l~~el~~l~~~l~~le~~~~~le~ei~~l~~~l~-~y~~~le~a~~~~~~~~~~l~~~k~~i~~Lk 452 (629)
+......++.++..|...+..-.......+.....++.++..+...|+ +.+.-+..+.. ....+..+...|+
T Consensus 17 le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~-------e~~~~e~kn~~L~ 89 (97)
T 2eqb_B 17 LKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARK-------EKYAIEILNKRLT 89 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 344444455555556666665556666666666677777777777776 44444444321 1233445555555
Q ss_pred HHHHH
Q 006828 453 LKLSE 457 (629)
Q Consensus 453 ~eI~~ 457 (629)
.+|.+
T Consensus 90 ~qL~d 94 (97)
T 2eqb_B 90 EQLRE 94 (97)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 55543
No 23
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=81.96 E-value=27 Score=30.93 Aligned_cols=75 Identities=12% Similarity=0.182 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHhhhHHHHHHHHHHHHHHHHhhccc----hHHHHHHHH
Q 006828 470 AKTRNERETLVDLRKKMESHIGLLAEEKE------------LMQKNLLEAKRNADDLRAKMESIGFN----SDRALSMLK 533 (629)
Q Consensus 470 eevkeRyefL~~Q~~DLe~~~~~L~~e~~------------~l~~~l~~~~k~i~~Lk~~I~~lg~v----aiee~~~~k 533 (629)
..+..+-+.|....+||..-++.|+.++. .+.+++..+...+..+..-|...-|+ =..|+..|-
T Consensus 17 ~kL~~~sd~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~~ekP~WKKiWE~EL~~Vc 96 (141)
T 3okq_A 17 TELGDLSDTLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFIDTEKPHWKKTWEAELDKVC 96 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHH
Confidence 45677888888888888888888887654 77888888888888898888888888 334999999
Q ss_pred HHHHHHhhhhh
Q 006828 534 NTAAMVCQSEN 544 (629)
Q Consensus 534 er~~fl~~q~~ 544 (629)
+--+||.-|.+
T Consensus 97 eEQqfl~~Qed 107 (141)
T 3okq_A 97 EEQQFLTLQEE 107 (141)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999977
No 24
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=76.81 E-value=52 Score=35.38 Aligned_cols=62 Identities=18% Similarity=0.160 Sum_probs=35.3
Q ss_pred HHHHHHHHhhhchHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 006828 450 DLRLKLSEMEKRFEEKVEELA-KTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNAD 512 (629)
Q Consensus 450 ~Lk~eI~~LG~vN~~AIeEye-evkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~ 512 (629)
.|+..+...+ .|.+.+.+|- +|+.++..|....+.-..+|..|+.-|+.+...+..+.--|+
T Consensus 93 ~Lr~rq~q~~-dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 93 ILRGDFSSAN-NRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp TTSSHHHHHH-HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhh-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444 5666777776 667777777666666556666666655555444444444433
No 25
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=75.75 E-value=34 Score=28.84 Aligned_cols=96 Identities=17% Similarity=0.130 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHhhhchH--HhHHHHHH
Q 006828 394 ELRDVVFKLKASCRDQQDKSKQLVNELADYKSALDQATLERDNAWKDLDEQRKSGMDLRLKLSEMEKRFE--EKVEELAK 471 (629)
Q Consensus 394 ~l~~~l~~le~~~~~le~ei~~l~~~l~~y~~~le~a~~~~~~~~~~l~~~k~~i~~Lk~eI~~LG~vN~--~AIeEyee 471 (629)
.+...+..+..++..+...+..+...+..+..++..+...-++... ...+|+|.. ..-+=...
T Consensus 10 ~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~v---------------y~~iG~vfv~~~~~ea~~~ 74 (117)
T 2zqm_A 10 AMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVV---------------YKTVGTLIVKTTKDKAVAE 74 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCE---------------EEEETTEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHh---------------HHHhhHHHhhccHHHHHHH
Confidence 3444455555555555555666655555556555555321111000 112444442 22233344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 006828 472 TRNERETLVDLRKKMESHIGLLAEEKELMQKNL 504 (629)
Q Consensus 472 vkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l 504 (629)
+..+.+++.....+|..++..+..++..+...+
T Consensus 75 L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l 107 (117)
T 2zqm_A 75 LKEKIETLEVRLNALERQEKKLNEKLKELTAQI 107 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666665555544444433
No 26
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=74.29 E-value=0.71 Score=49.29 Aligned_cols=54 Identities=4% Similarity=0.092 Sum_probs=9.1
Q ss_pred hHHHHHHHHHHHHHHhhhhhh-HhhhhHhH-HHHhhhhhHHHHHHHHHHHHHHHcc
Q 006828 525 SDRALSMLKNTAAMVCQSEND-IDGQQELV-VDEKKLQGETDQYAAEFQAIVNAFR 578 (629)
Q Consensus 525 aiee~~~~ker~~fl~~q~~D-~~ak~~l~-~i~~~~~~m~~~f~~~f~~i~~~F~ 578 (629)
|+++|+.+.++|.++..+..+ ..+...+. .+..++..+...|..+|+.|+..|.
T Consensus 226 a~ee~e~l~e~l~~l~~~l~~~r~~~~~l~~~i~~L~~~r~~~~~~~~~~i~~~~~ 281 (430)
T 1w1w_A 226 RGSRYDEAEGRFEVINNETEQLKAEEKKILNQFLKIKKKRKELFEKTFDYVSDHLD 281 (430)
T ss_dssp ----------------------------------------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999 77888888 9999999999999999999999887
No 27
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=74.18 E-value=63 Score=34.44 Aligned_cols=27 Identities=15% Similarity=0.240 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 342 EKDEISHRLEKAVVVLDDKEGEIAKLL 368 (629)
Q Consensus 342 e~~~le~~i~el~~el~~l~~~leel~ 368 (629)
+...++..+.++...+.+..+.+.++.
T Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (487)
T 3oja_A 450 ENARLKKLNGEADLALASANATLQELV 476 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhhhhhhhhhhHhcccHHHHHH
Confidence 333334444444444444444444433
No 28
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=73.96 E-value=38 Score=28.30 Aligned_cols=59 Identities=15% Similarity=0.021 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 006828 160 RLSQACREKDLMKGELDCQVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKN 218 (629)
Q Consensus 160 ~l~~L~~~~~~l~~~l~~~~~~l~~l~~~l~ele~~~~~le~q~~~l~~e~~~L~~E~~ 218 (629)
.-.+|..+...+.-.++.+...+......+..+.............++..+..+..+..
T Consensus 17 snAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~ 75 (103)
T 4h22_A 17 SNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFA 75 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555555555555555555444444444444444444444333
No 29
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=72.48 E-value=48 Score=28.77 Aligned_cols=28 Identities=21% Similarity=0.336 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 275 ELEKEVNKLNEIVLALQKEEKVLCGKIL 302 (629)
Q Consensus 275 ele~ela~l~e~l~~l~~~~~~l~~~i~ 302 (629)
+++..+.+-...+.++...++.++.++.
T Consensus 102 ELEADLKEKDsMVe~LT~TiG~LrKELE 129 (167)
T 4gkw_A 102 ELEADLKEKDSMVESLTETIGILRKELE 129 (167)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 4444444444555566666555444443
No 30
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=72.18 E-value=1.6 Score=33.29 Aligned_cols=29 Identities=14% Similarity=0.169 Sum_probs=20.0
Q ss_pred hhhhhccchhhhhhhh------------hhHHHHHhhHhHh
Q 006828 96 ELSGESDQKVSLEIEK------------GLFCVFLMTQMKE 124 (629)
Q Consensus 96 ~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~ 124 (629)
+|....++..++.+++ |||++|++.+|++
T Consensus 22 ~~~k~~~~~~A~~iIQrn~R~~~~lr~w~W~~L~~kikPLL 62 (63)
T 2bl0_A 22 HFRQAREKSVSARIIQDNIRAYLEFKNWAWWKLFAKARPLL 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHhhhcc
Confidence 3444445555555552 9999999999975
No 31
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=71.65 E-value=41 Score=27.86 Aligned_cols=93 Identities=16% Similarity=0.111 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHhhhchH--HhHHHHHHHH
Q 006828 396 RDVVFKLKASCRDQQDKSKQLVNELADYKSALDQATLERDNAWKDLDEQRKSGMDLRLKLSEMEKRFE--EKVEELAKTR 473 (629)
Q Consensus 396 ~~~l~~le~~~~~le~ei~~l~~~l~~y~~~le~a~~~~~~~~~~l~~~k~~i~~Lk~eI~~LG~vN~--~AIeEyeevk 473 (629)
...+..++.++..+...+..+...+..+..+...+...-++... -..+|+|.. ..-+=...+.
T Consensus 7 i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~v---------------y~~iG~vfv~~~~~e~~~~L~ 71 (107)
T 1fxk_A 7 LAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEV---------------YKSSGNILIRVAKDELTEELQ 71 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCE---------------EEEETTEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchH---------------HHHHhHHHHhccHHHHHHHHH
Confidence 33444444445555555555555555555555544321111000 012445442 2233334556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006828 474 NERETLVDLRKKMESHIGLLAEEKELMQKN 503 (629)
Q Consensus 474 eRyefL~~Q~~DLe~~~~~L~~e~~~l~~~ 503 (629)
.+.+++......|+.++..++.++..+...
T Consensus 72 ~~~e~i~~~i~~le~~~~~~~~~l~~lk~~ 101 (107)
T 1fxk_A 72 EKLETLQLREKTIERQEERVMKKLQEMQVN 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666655544433
No 32
>2l5b_A Activator of apoptosis harakiri; BCL-2, BH3-only, transmembrane domain; NMR {Synthetic}
Probab=71.63 E-value=3.3 Score=26.07 Aligned_cols=16 Identities=25% Similarity=0.598 Sum_probs=12.3
Q ss_pred chhhhHhhHHHHHHHH
Q 006828 605 SFWTVVSSATTIFAAA 620 (629)
Q Consensus 605 ~~~~~~~~~~~~~~~~ 620 (629)
..|.|+|++.-|-|-|
T Consensus 7 ~yw~wlcaaa~vaala 22 (32)
T 2l5b_A 7 TYWPWLCAAAQVAALA 22 (32)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHH
Confidence 5799999988775544
No 33
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=71.36 E-value=20 Score=31.56 Aligned_cols=7 Identities=43% Similarity=0.852 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 006828 181 EASRLKD 187 (629)
Q Consensus 181 ~l~~l~~ 187 (629)
.+.++..
T Consensus 47 e~~~L~~ 53 (135)
T 2e7s_A 47 EVKRLRE 53 (135)
T ss_dssp HHHTHHH
T ss_pred HHHHHHH
Confidence 3333333
No 34
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=71.11 E-value=7.6 Score=32.26 Aligned_cols=73 Identities=14% Similarity=0.130 Sum_probs=40.4
Q ss_pred hcccCCCCCCcHHHHHhhhhhhHHHhhHhHHHHH----HhHHHHHHHHHHHHHHHhhhhhhhhHHHhhhhhccchhhhhh
Q 006828 34 ALTHRNSMEDPSEQIKRLKSLNDLLVHRSHEQRQ----QVESLSQAKAALEAELSLFGVEKSELLAELSGESDQKVSLEI 109 (629)
Q Consensus 34 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~ 109 (629)
|+++.| ++-++..|++.|+-|-..-.+-+. ++..++.--..||++|...-.+......+|..+-+-++++++
T Consensus 4 ~~~~~~----~~~~~~~Lq~~~~~LE~~l~e~E~~~~~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~ 79 (95)
T 3mov_A 4 HHHHSS----RENLYFQGQKESRACLERIQELEDLLAKEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDM 79 (95)
T ss_dssp ------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccc----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555 788999999999988665444333 445555555567777777777777777777777777777776
Q ss_pred h
Q 006828 110 E 110 (629)
Q Consensus 110 ~ 110 (629)
+
T Consensus 80 E 80 (95)
T 3mov_A 80 E 80 (95)
T ss_dssp H
T ss_pred H
Confidence 6
No 35
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=70.35 E-value=1.6 Score=33.46 Aligned_cols=29 Identities=10% Similarity=0.149 Sum_probs=19.7
Q ss_pred hhhhhccchhhhhhhh------------hhHHHHHhhHhHh
Q 006828 96 ELSGESDQKVSLEIEK------------GLFCVFLMTQMKE 124 (629)
Q Consensus 96 ~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~ 124 (629)
+|.....+..++.+++ |||++|++.+|++
T Consensus 24 ~~~k~~~~~~A~~iIQrn~R~~~~l~~w~W~~l~~kikPll 64 (64)
T 1wdc_A 24 AYKKLQDQRIGLSVIQRNIRKWLVLRNWQWWKLYSKVKPLL 64 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhcCC
Confidence 3444445555565552 9999999999974
No 36
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=68.52 E-value=39 Score=26.90 Aligned_cols=55 Identities=18% Similarity=0.241 Sum_probs=46.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 006828 464 EKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKM 518 (629)
Q Consensus 464 ~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I 518 (629)
+-+.|+..++-|.+.+..++-.-+..+.+-+.++.+++..+......+..|..++
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 6778888888888888888888888888888888888888888888887777665
No 37
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=67.54 E-value=70 Score=28.69 Aligned_cols=65 Identities=14% Similarity=0.073 Sum_probs=39.2
Q ss_pred HHHHHHHHhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 361 EGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNELADYKS 425 (629)
Q Consensus 361 ~~~leel~~e~~~l~e~~~~~e~el~~l~~el~~l~~~l~~le~~~~~le~ei~~l~~~l~~y~~ 425 (629)
+..+..+......+...+......+..++.++..+.-++..++.+..+++.+...+..++..+..
T Consensus 74 ~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk~ 138 (152)
T 3a7p_A 74 QKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKTE 138 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444555556666666666666777777777778888888777765443
No 38
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=67.20 E-value=58 Score=27.68 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=11.8
Q ss_pred HHHHHHHHhHHHhHHHHHHHHHHHH
Q 006828 141 IALKSEVSGLMGNIENERERLSQAC 165 (629)
Q Consensus 141 ~~L~eela~l~~~~~~~ke~l~~L~ 165 (629)
+.|......+...+..++..+....
T Consensus 6 rdL~~~~~~L~~E~e~~k~K~~~~~ 30 (111)
T 2v66_B 6 RDLQADNQRLKYEVEALKEKLEHQY 30 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555554444444444433
No 39
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=67.12 E-value=36 Score=25.21 Aligned_cols=54 Identities=11% Similarity=0.011 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 006828 467 EELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMES 520 (629)
Q Consensus 467 eEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~ 520 (629)
+.+..+...++........+...+..+...+..+.+++......|..++..|..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~~ 58 (60)
T 3htk_A 5 NTKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNEY 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555666666666666666666666666666667777777777777666654
No 40
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=66.26 E-value=36 Score=29.39 Aligned_cols=22 Identities=14% Similarity=0.335 Sum_probs=0.0
Q ss_pred hhhchHHhHHHHHHHHHHHHHH
Q 006828 458 MEKRFEEKVEELAKTRNERETL 479 (629)
Q Consensus 458 LG~vN~~AIeEyeevkeRyefL 479 (629)
...-...+.+.|..+++.|..|
T Consensus 97 ~E~kAqa~Eerf~KLKe~yteL 118 (120)
T 3i00_A 97 IERKAQANEQRYSKLKEKYSEL 118 (120)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445566677777766655
No 41
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=65.96 E-value=31 Score=29.17 Aligned_cols=82 Identities=20% Similarity=0.117 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHhhhhhhHhhhhHhH-HHHhhhhhHHHHHHHHHHHHHHHccchhHhHHHHHHHHHHHhhhHHhhcccc
Q 006828 527 RALSMLKNTAAMVCQSENDIDGQQELV-VDEKKLQGETDQYAAEFQAIVNAFRNREKLVEDMKHRVELMQNSVEAQKKKS 605 (629)
Q Consensus 527 ee~~~~ker~~fl~~q~~D~~ak~~l~-~i~~~~~~m~~~f~~~f~~i~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (629)
..+..+.+|++=+.+-.. .-.+|. +..+|-.-+..+ -+.++.|-. |=+.+.+.+.+=...|+.|+.-+|+..
T Consensus 11 ~~l~~i~eR~~eI~~Ie~---~I~eL~~iF~dla~lV~eQ-ge~Id~Ie~---nv~~a~~~v~~g~~eL~kA~~yqk~~r 83 (109)
T 3hd7_B 11 QALSEIETRHSEIIKLEN---SIRELHDMFMDMAMLVESQ-GEMIDRIEY---NVEHAVDYVERAVSDTKKAVKYQSKAR 83 (109)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH-HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHh-hHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 355666666655544433 333333 333333222221 233333333 334555556666667777777777888
Q ss_pred hhhhHhhHHH
Q 006828 606 FWTVVSSATT 615 (629)
Q Consensus 606 ~~~~~~~~~~ 615 (629)
-|.|++..-.
T Consensus 84 kk~~i~l~~~ 93 (109)
T 3hd7_B 84 RKKIMIIICC 93 (109)
T ss_dssp HHHHHHHHHH
T ss_pred CcceehHHHH
Confidence 8888876544
No 42
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=64.87 E-value=52 Score=26.23 Aligned_cols=30 Identities=20% Similarity=0.160 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 299 GKILELENSCSEAMDEKLEMVLEIKALLDQ 328 (629)
Q Consensus 299 ~~i~~le~~l~~~~~~~~~l~~ei~~l~~e 328 (629)
.++..++.++.....+...+..++..+...
T Consensus 27 ~~v~~le~~Le~s~~~q~~~~~Elk~l~e~ 56 (79)
T 3cvf_A 27 HQLRAMERSLEEARAERERARAEVGRAAQL 56 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335555555555555555555555444444
No 43
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=61.88 E-value=22 Score=31.33 Aligned_cols=82 Identities=12% Similarity=0.125 Sum_probs=50.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhcc---------c--hHHHHHHH
Q 006828 464 EKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGF---------N--SDRALSML 532 (629)
Q Consensus 464 ~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~lg~---------v--aiee~~~~ 532 (629)
..+.+|+.++..|..+.+...++...+..|..++.....--..+......+..+++.|-. | |-.+...+
T Consensus 22 ~~~~~le~l~~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~ 101 (135)
T 2e7s_A 22 AAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAI 101 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666666666666665555555555555566666665554 2 33366666
Q ss_pred HHHHHHHhhhhhh
Q 006828 533 KNTAAMVCQSEND 545 (629)
Q Consensus 533 ker~~fl~~q~~D 545 (629)
..|.+-|..|..|
T Consensus 102 e~r~~~L~~ql~e 114 (135)
T 2e7s_A 102 EILNKRLTEQLRE 114 (135)
T ss_dssp HHHHHHHHHTTTH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777777665
No 44
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=58.92 E-value=49 Score=27.37 Aligned_cols=88 Identities=9% Similarity=0.085 Sum_probs=48.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH---HHHhhccc-----hHHHHHHHHHH
Q 006828 464 EKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRA---KMESIGFN-----SDRALSMLKNT 535 (629)
Q Consensus 464 ~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~---~I~~lg~v-----aiee~~~~ker 535 (629)
..+..|..+..++..+..++..+..++..+..=+. .+..+-. =...+||| -.+....|..|
T Consensus 5 ~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~-----------EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~ 73 (107)
T 1fxk_A 5 HQLAQFQQLQQQAQAISVQKQTVEMQINETQKALE-----------ELSRAADDAEVYKSSGNILIRVAKDELTEELQEK 73 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHH
Confidence 34556666666666666655555555554443111 1111111 12346666 55578889999
Q ss_pred HHHHhhhhhh-HhhhhHhH-HHHhhhhhH
Q 006828 536 AAMVCQSEND-IDGQQELV-VDEKKLQGE 562 (629)
Q Consensus 536 ~~fl~~q~~D-~~ak~~l~-~i~~~~~~m 562 (629)
.+++.....+ ......+. -+.++...+
T Consensus 74 ~e~i~~~i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 74 LETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999877776 55555555 555554433
No 45
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=57.22 E-value=79 Score=25.88 Aligned_cols=28 Identities=18% Similarity=0.309 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 301 ILELENSCSEAMDEKLEMVLEIKALLDQ 328 (629)
Q Consensus 301 i~~le~~l~~~~~~~~~l~~ei~~l~~e 328 (629)
|..+...+..+......+..+++.+...
T Consensus 58 i~~Lr~~i~~~~~ek~~l~~e~dnl~~~ 85 (93)
T 3s4r_A 58 MRELRRQVDQLTNDKARVEVERDNLAED 85 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444333
No 46
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=57.12 E-value=86 Score=26.25 Aligned_cols=47 Identities=15% Similarity=0.097 Sum_probs=31.7
Q ss_pred hhccc-----hHHHHHHHHHHHHHHhhhhhh-HhhhhHhH-HHHhhhhhHHHHH
Q 006828 520 SIGFN-----SDRALSMLKNTAAMVCQSEND-IDGQQELV-VDEKKLQGETDQY 566 (629)
Q Consensus 520 ~lg~v-----aiee~~~~ker~~fl~~q~~D-~~ak~~l~-~i~~~~~~m~~~f 566 (629)
.+|+| -.+....|..|.+++.....+ ......+. -+.++...+...|
T Consensus 58 ~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 58 TVGTLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSAL 111 (117)
T ss_dssp EETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45665 555788889999999887777 55666666 6666665544444
No 47
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=54.95 E-value=56 Score=27.23 Aligned_cols=34 Identities=26% Similarity=0.274 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 465 KVEELAKTRNERETLVDLRKKMESHIGLLAEEKE 498 (629)
Q Consensus 465 AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~ 498 (629)
+-++|..++.+.+.|....+.|..++..|+.+++
T Consensus 10 ~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le 43 (100)
T 1go4_E 10 SREEADTLRLKVEELEGERSRLEEEKRMLEAQLE 43 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777777777777777777777777776665
No 48
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=51.06 E-value=96 Score=25.03 Aligned_cols=12 Identities=33% Similarity=0.421 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 006828 347 SHRLEKAVVVLD 358 (629)
Q Consensus 347 e~~i~el~~el~ 358 (629)
...+.+++..++
T Consensus 45 ~~~i~el~akid 56 (101)
T 1d7m_A 45 EKRLRELEAKLD 56 (101)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 49
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=50.41 E-value=1e+02 Score=25.18 Aligned_cols=36 Identities=11% Similarity=0.271 Sum_probs=21.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 382 DNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLV 417 (629)
Q Consensus 382 e~el~~l~~el~~l~~~l~~le~~~~~le~ei~~l~ 417 (629)
+..|..++..+..+.....++..+++++...+..+.
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k 90 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLR 90 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666555555555444443
No 50
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=50.04 E-value=1.2e+02 Score=25.82 Aligned_cols=15 Identities=33% Similarity=0.419 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 006828 277 EKEVNKLNEIVLALQ 291 (629)
Q Consensus 277 e~ela~l~e~l~~l~ 291 (629)
+.+.+..+..+..|.
T Consensus 45 eaQAaTCNqTV~tL~ 59 (121)
T 3mq7_A 45 EAQAATANHTVMALM 59 (121)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444444433
No 51
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=48.75 E-value=94 Score=24.25 Aligned_cols=29 Identities=21% Similarity=0.324 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 300 KILELENSCSEAMDEKLEMVLEIKALLDQ 328 (629)
Q Consensus 300 ~i~~le~~l~~~~~~~~~l~~ei~~l~~e 328 (629)
++..++.++.....+...+..++..+...
T Consensus 22 ~v~~le~~Le~s~~~q~~~~~Elk~~~e~ 50 (72)
T 3cve_A 22 QLSEMEQRLEKSQSEQDAFRSNLKTLLEI 50 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555555555444444
No 52
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=47.80 E-value=48 Score=27.10 Aligned_cols=67 Identities=15% Similarity=0.228 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhhhchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Q 006828 447 SGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESI 521 (629)
Q Consensus 447 ~i~~Lk~eI~~LG~vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~l 521 (629)
++..|+..-..|.+-..++.=-...+ .|+.+|+.....|..+++.+........+.++.++.....|
T Consensus 22 ev~~lKq~RRtlKNRgyAq~CR~Kr~--------~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 22 EVIRLKQKRRTLKNRGYAQSCRYKRV--------QQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444444433 35566777777777777777777777777777777777765
No 53
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=44.60 E-value=1.7e+02 Score=26.12 Aligned_cols=46 Identities=13% Similarity=0.021 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHH
Q 006828 242 EKETDDLKLKIKVIVKEKNAIEMQNSEQKVINDELEKEVNKLNEIV 287 (629)
Q Consensus 242 ~~ei~~l~~~ie~l~~el~ele~~~e~l~~el~ele~ela~l~e~l 287 (629)
..++..+..++..+..++......++.++.++..++.++..++..+
T Consensus 74 ~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl 119 (152)
T 3a7p_A 74 QKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKL 119 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333344444444433333333
No 54
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=41.74 E-value=74 Score=25.21 Aligned_cols=20 Identities=20% Similarity=0.129 Sum_probs=8.1
Q ss_pred HhhHHHHHHHHHHHHHHHHH
Q 006828 271 VINDELEKEVNKLNEIVLAL 290 (629)
Q Consensus 271 ~el~ele~ela~l~e~l~~l 290 (629)
.+|..|+.+++-.+..+..|
T Consensus 14 ~Ri~~LE~klAfqE~tIeeL 33 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTEL 33 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444433333
No 55
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=41.56 E-value=1.4e+02 Score=24.34 Aligned_cols=14 Identities=36% Similarity=0.373 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 006828 242 EKETDDLKLKIKVI 255 (629)
Q Consensus 242 ~~ei~~l~~~ie~l 255 (629)
....+.+...+..+
T Consensus 19 ~~~~~ri~~aig~~ 32 (114)
T 2xzr_A 19 ENEIARIKKLIGAI 32 (114)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHhhh
Confidence 33333333333333
No 56
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=40.85 E-value=1.9e+02 Score=30.79 Aligned_cols=106 Identities=9% Similarity=0.062 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhhhhhhHhhhhHhH-HH
Q 006828 477 ETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGFNSDRALSMLKNTAAMVCQSENDIDGQQELV-VD 555 (629)
Q Consensus 477 efL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~lg~vaiee~~~~ker~~fl~~q~~D~~ak~~l~-~i 555 (629)
+||.+|.......|+.|+..++.+...-..+..-|..|+.....-.++...- +-+. .+++..|+ +.
T Consensus 84 d~L~kye~~V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~~~~q~~~~~n--------~~~~-----~~s~~mle~~~ 150 (461)
T 3ghg_B 84 EALLQQERPIRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQVKDN--------ENVV-----NEYSSELEKHQ 150 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH--------HHTT-----SCHHHHHHHHH
T ss_pred HHHHhcccchhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccCCCCcc--------hhHH-----HHHHHHHHHHH
Confidence 7899999999999999999888888888888888888887777666531110 0111 22444444 44
Q ss_pred HhhhhhHHHHHHHHHHHHHHHccchhHhHHHHHHHHHHHh
Q 006828 556 EKKLQGETDQYAAEFQAIVNAFRNREKLVEDMKHRVELMQ 595 (629)
Q Consensus 556 ~~~~~~m~~~f~~~f~~i~~~F~~~~~~~~~~~~~~~~~~ 595 (629)
.-....+...|.+.+..+.....+-...|..|+.-+-.+.
T Consensus 151 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~~~~~~ 190 (461)
T 3ghg_B 151 LYIDETVNSNIPTNLRVLRSILENLRSKIQKLESDVSAQM 190 (461)
T ss_dssp THHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4445555666677777777666655566666666555443
No 57
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=40.01 E-value=1.5e+02 Score=24.23 Aligned_cols=25 Identities=16% Similarity=0.141 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 304 LENSCSEAMDEKLEMVLEIKALLDQ 328 (629)
Q Consensus 304 le~~l~~~~~~~~~l~~ei~~l~~e 328 (629)
|..++..+..-+......|+.+...
T Consensus 7 L~~~L~~aEeaL~~kq~~id~lke~ 31 (94)
T 3jsv_C 7 LRQQLQQAEEALVAKQELIDKLKEE 31 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3333444444444444444444443
No 58
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=40.01 E-value=78 Score=25.05 Aligned_cols=43 Identities=2% Similarity=-0.101 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 006828 468 ELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRN 510 (629)
Q Consensus 468 EyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~ 510 (629)
.+.++..+..|...-.++|...+..-..+++.++..+..+..+
T Consensus 15 Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~r 57 (78)
T 3efg_A 15 RLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLED 57 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555554444444444444444444443333333333
No 59
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=39.02 E-value=80 Score=24.75 Aligned_cols=49 Identities=8% Similarity=0.078 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhhhchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 448 GMDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEE 496 (629)
Q Consensus 448 i~~Lk~eI~~LG~vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e 496 (629)
+..++..+..|.....++.+..+.+....+|+.....|++--.+....+
T Consensus 4 m~aiKkkmqaLk~Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q~~e~e 52 (75)
T 3mtu_A 4 MDAIKKKMQMLKLDKENALDRAEQAEADKDFYFGKLRNIELICQENEGE 52 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence 4566777777888888999999999999999999999998877765543
No 60
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=36.84 E-value=55 Score=20.51 Aligned_cols=25 Identities=8% Similarity=0.284 Sum_probs=13.6
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHhh
Q 006828 497 KELMQKNLLEAKRNADDLRAKMESI 521 (629)
Q Consensus 497 ~~~l~~~l~~~~k~i~~Lk~~I~~l 521 (629)
+..+...+..+++++..|+-+|..|
T Consensus 4 iaalkqeiaalkkeiaalkfeiaal 28 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAAL 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555666666665554
No 61
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=36.83 E-value=3e+02 Score=29.41 Aligned_cols=130 Identities=12% Similarity=0.175 Sum_probs=0.0
Q ss_pred HhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhhhhhh-HhhhhHhHHHHhhhhhHHHHHHHHHHHHHHHcc
Q 006828 500 MQKNLLEAKRNADDLRAKMESIGFNSDRALSMLKNTAAMVCQSEND-IDGQQELVVDEKKLQGETDQYAAEFQAIVNAFR 578 (629)
Q Consensus 500 l~~~l~~~~k~i~~Lk~~I~~lg~vaiee~~~~ker~~fl~~q~~D-~~ak~~l~~i~~~~~~m~~~f~~~f~~i~~~F~ 578 (629)
++..+.++....+.=...++.=--+-...=..+.+-|.|+..|..+ ....+++.++..--+.|..-.......+..-..
T Consensus 95 ~~~Kl~eLE~e~k~d~~~~khn~~I~~k~g~~l~~v~~~~~~~~~~e~~e~~q~~~LekAl~s~~~i~~~e~~~l~~L~~ 174 (526)
T 3iyk_A 95 IQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILNKAVTSYNKILTEEDLQMRRLAT 174 (526)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q ss_pred -----------chhHhHHHHHHHHHHHhhhHHhhc--------------ccchhhhHhhHHHHHHHHHHHHHhhcC
Q 006828 579 -----------NREKLVEDMKHRVELMQNSVEAQK--------------KKSFWTVVSSATTIFAAASVAYIARIR 629 (629)
Q Consensus 579 -----------~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (629)
+-..||+.|.+.+..|+.+|++.+ ..-+.-..++---+|.|....-+|.+|
T Consensus 175 AL~kE~~~Rt~dE~~mi~~yr~k~~aL~~aIe~Er~~~~EEAIqe~~dmsaeI~E~AaeEVP~vGag~At~iATaR 250 (526)
T 3iyk_A 175 ALQKEIGERTHAETVMVKEYRDKIDALKNAIEVERDGMQEEAIQEIAGMTADVLEAASEEVPLIGAGMATAVATGR 250 (526)
T ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHhhhCCcchHHHHHHHHHHH
No 62
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=36.14 E-value=73 Score=23.24 Aligned_cols=13 Identities=8% Similarity=0.038 Sum_probs=7.1
Q ss_pred hHHHHHHHHHHHH
Q 006828 525 SDRALSMLKNTAA 537 (629)
Q Consensus 525 aiee~~~~ker~~ 537 (629)
|-+|-.+..+|.|
T Consensus 37 ak~eA~RAN~RlD 49 (52)
T 1jcd_A 37 AKDDAARANQRAD 49 (52)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhh
Confidence 4445555555554
No 63
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=36.07 E-value=1.2e+02 Score=21.77 Aligned_cols=48 Identities=13% Similarity=0.196 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhc
Q 006828 475 ERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIG 522 (629)
Q Consensus 475 RyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~lg 522 (629)
+|+.|..|-++|...-+.|+.|+..=...+..+..+-..+|.-+..||
T Consensus 4 sYdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq 51 (54)
T 1deb_A 4 SYDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQ 51 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHc
Confidence 477888888888888888888777766667777666666666655554
No 64
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=35.25 E-value=94 Score=34.23 Aligned_cols=12 Identities=8% Similarity=0.199 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 006828 480 VDLRKKMESHIG 491 (629)
Q Consensus 480 ~~Q~~DLe~~~~ 491 (629)
..|...|...|.
T Consensus 517 q~qL~~L~~el~ 528 (575)
T 2i1j_A 517 HNQLKALKQDLA 528 (575)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 65
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=35.21 E-value=1.3e+02 Score=21.84 Aligned_cols=35 Identities=26% Similarity=0.416 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhc
Q 006828 488 SHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIG 522 (629)
Q Consensus 488 ~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~lg 522 (629)
.++..|......|...+..++.+|..|+.+|+.||
T Consensus 16 ~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 16 ARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333333333444444444555555555555544
No 66
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=34.01 E-value=84 Score=34.64 Aligned_cols=18 Identities=22% Similarity=0.335 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006828 191 EMEGKERNLRSEILVLQS 208 (629)
Q Consensus 191 ele~~~~~le~q~~~l~~ 208 (629)
+++..+..++.+......
T Consensus 339 ~~~~~~~~~~~~~~~~~~ 356 (575)
T 2i1j_A 339 EYQDRLRQMQEEMERSQA 356 (575)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 67
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=33.99 E-value=2.7e+02 Score=27.06 Aligned_cols=70 Identities=16% Similarity=0.158 Sum_probs=30.5
Q ss_pred HHHHHHhhccc-hHHHHHHHHH---HHHHHhhhhhh-HhhhhHhHHHHhhhhhHHHHHHHHHHHHHHHccchhHhH
Q 006828 514 LRAKMESIGFN-SDRALSMLKN---TAAMVCQSEND-IDGQQELVVDEKKLQGETDQYAAEFQAIVNAFRNREKLV 584 (629)
Q Consensus 514 Lk~~I~~lg~v-aiee~~~~ke---r~~fl~~q~~D-~~ak~~l~~i~~~~~~m~~~f~~~f~~i~~~F~~~~~~~ 584 (629)
+.+.+.-.||. ..++.+.+=+ -.-|.....-| ..++..|..|.+-..++.. .......++.-|..=-.+|
T Consensus 149 i~Rq~~i~~~~~tdeeie~~ie~g~~~~f~q~~l~~~~~~~~~l~~i~~R~~~i~~-ie~~i~el~~if~dla~lV 223 (267)
T 1dn1_B 149 IQRQLEITGRTTTSEELEDMLESGNPAIFASGIIMDSSISKQALSEIETRHSEIIK-LENSIRELHDMFMDMAMLV 223 (267)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHTCSSCTTTTTCCCCSHHHHHHHHHHHHHHHHHHH-HHHHHHTTHHHHHHHHHHH
T ss_pred HHhHhhccCCCCCHHHHHHHHhCCcHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 34456667876 4444443211 01233222223 3445555444443333322 3455555666666433333
No 68
>3teq_A Stromal interaction molecule 1; signaling protein; 1.90A {Homo sapiens}
Probab=33.38 E-value=21 Score=29.80 Aligned_cols=43 Identities=23% Similarity=0.279 Sum_probs=36.5
Q ss_pred cchhcccCCCCCCcHHHHHhhhhhhHHH---hhHhHHHHHHhHHHH
Q 006828 31 KTVALTHRNSMEDPSEQIKRLKSLNDLL---VHRSHEQRQQVESLS 73 (629)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l---~~~~~~~~~~~~~~~ 73 (629)
.++++.|++|..|-|.+|-.+|.-.+-. ++|...|=+|||+|.
T Consensus 49 gs~~~ahs~slD~vD~~Il~Ak~aL~evt~~l~Er~~RW~qIE~l~ 94 (101)
T 3teq_A 49 GTFHVAHSSSLDDVDHKILTAKQALSEATAALRERLHRWQQIEILT 94 (101)
T ss_dssp CHHHHHTCGGGGGTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeehhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4788889999999999999998766544 599999999999984
No 69
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=31.15 E-value=1.2e+02 Score=22.46 Aligned_cols=29 Identities=24% Similarity=0.378 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 472 TRNERETLVDLRKKMESHIGLLAEEKELM 500 (629)
Q Consensus 472 vkeRyefL~~Q~~DLe~~~~~L~~e~~~l 500 (629)
+..++++|.....+|...+..|..++..+
T Consensus 27 Le~~~~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 27 LEKKAEDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555544433
No 70
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=31.11 E-value=2e+02 Score=23.00 Aligned_cols=57 Identities=7% Similarity=0.106 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Q 006828 465 KVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESI 521 (629)
Q Consensus 465 AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~l 521 (629)
|....+...+.+=|...+.+.|..=...+..+++--.+.+..+...|..++..|..|
T Consensus 21 aFgKrEaA~Ee~YfrqkekEqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 21 AFGKREQAEEERYFRARAKEQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444455555555555555555444444445555555555555555555555544
No 71
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=31.01 E-value=1.5e+02 Score=21.51 Aligned_cols=25 Identities=0% Similarity=-0.015 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 185 LKDRLIEMEGKERNLRSEILVLQSD 209 (629)
Q Consensus 185 l~~~l~ele~~~~~le~q~~~l~~e 209 (629)
|...+..+...+...+.+..+...+
T Consensus 23 LssdV~al~~~v~~ak~eA~RAN~R 47 (52)
T 1jcd_A 23 ASNDANAARSDAQAAKDDAARANQR 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333444444444444443
No 72
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=30.86 E-value=1.9e+02 Score=25.49 Aligned_cols=103 Identities=13% Similarity=0.037 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhh-hhccccHHHHHHHHHHHHHHHHHhhhch
Q 006828 387 GLHKEIGELRDVVFKLKASCRDQQDKSKQL---VNELADYKSALDQATLER-DNAWKDLDEQRKSGMDLRLKLSEMEKRF 462 (629)
Q Consensus 387 ~l~~el~~l~~~l~~le~~~~~le~ei~~l---~~~l~~y~~~le~a~~~~-~~~~~~l~~~k~~i~~Lk~eI~~LG~vN 462 (629)
.+..++..+...+..++..+..+...+..+ ..++.+|...++.+.... .+...- |.
T Consensus 6 ~~~~~l~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~~l~~~~~~il--------------------vp 65 (151)
T 2zdi_C 6 QNNKELEKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENLKKIEEEKPEIL--------------------VP 65 (151)
T ss_dssp SSTTHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSCEEE--------------------EE
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEE--------------------EE
Q ss_pred HH----------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 006828 463 EE----------------------------KVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKR 509 (629)
Q Consensus 463 ~~----------------------------AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k 509 (629)
++ ..+-.+-++.|.+++..+.+.|...+..++..+..+...+..+..
T Consensus 66 lg~~~yv~g~i~~~~~V~v~lG~g~~vE~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~ 140 (151)
T 2zdi_C 66 IGAGSFLKGVIVDKNNAIVSVGSGYAVERSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQ 140 (151)
T ss_dssp CSSSCEEEEECSCTTEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred cCCCeEEEEEECCCCEEEEEeCCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 73
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=30.79 E-value=1.6e+02 Score=24.08 Aligned_cols=72 Identities=14% Similarity=0.091 Sum_probs=30.3
Q ss_pred HHhhHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHH
Q 006828 378 KVCQDNEISGLHKEIGELRDVVF-KLKASCRDQQDKSKQLVNELADYKSALDQATLERDNAWKDLDEQRKSGMDLRLKLS 456 (629)
Q Consensus 378 ~~~~e~el~~l~~el~~l~~~l~-~le~~~~~le~ei~~l~~~l~~y~~~le~a~~~~~~~~~~l~~~k~~i~~Lk~eI~ 456 (629)
+..+..+...+..+....+.... .++.++...-.++..+...+.+++.+-.... .....+|..|+.++.
T Consensus 16 LD~ir~Efe~~~~e~~~~k~q~~~eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~kmK----------q~YEeEI~rLr~eLe 85 (92)
T 3vp9_A 16 LDAIRQEFLQVSQEANTYRLQNQKDYDFKMNQQLAEMQQIRNTVYERELTHRKMK----------DAYEEEIKHLKLGLE 85 (92)
T ss_dssp -CCTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH
Confidence 33344444444444444333332 4444444444555555554444333322221 123345566666665
Q ss_pred Hhh
Q 006828 457 EME 459 (629)
Q Consensus 457 ~LG 459 (629)
..|
T Consensus 86 ~r~ 88 (92)
T 3vp9_A 86 QRD 88 (92)
T ss_dssp C--
T ss_pred HcC
Confidence 544
No 74
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=29.94 E-value=2.6e+02 Score=23.86 Aligned_cols=40 Identities=10% Similarity=0.150 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 006828 469 LAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAK 508 (629)
Q Consensus 469 yeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~ 508 (629)
.+-++.|.+++..+.+.|...+..++..+..+...+..+.
T Consensus 90 ~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~ 129 (133)
T 1fxk_C 90 MESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344567777777777777777777776666666555443
No 75
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=29.17 E-value=5.1e+02 Score=27.02 Aligned_cols=102 Identities=9% Similarity=0.134 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccc---hHH---HH-H-HHHHHHHHHhhhhhhHh
Q 006828 476 RETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGFN---SDR---AL-S-MLKNTAAMVCQSENDID 547 (629)
Q Consensus 476 yefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~lg~v---aie---e~-~-~~ker~~fl~~q~~D~~ 547 (629)
-+||.++.......|..|+..++.+...-..+...|..|+.....-.+. .|+ +| . ++.+...|
T Consensus 26 ~d~L~kye~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~--------- 96 (411)
T 3ghg_C 26 ADFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKY--------- 96 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHhccchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHH---------
Confidence 3799999999999999999999999888888888999888888877764 222 22 1 22222111
Q ss_pred hhhHhHHHHhhhhhHHHHHHHHHHHHHHHccchhHhHHHHHHHHHHHhhhH
Q 006828 548 GQQELVVDEKKLQGETDQYAAEFQAIVNAFRNREKLVEDMKHRVELMQNSV 598 (629)
Q Consensus 548 ak~~l~~i~~~~~~m~~~f~~~f~~i~~~F~~~~~~~~~~~~~~~~~~~~~ 598 (629)
..+...+...+..+...+.+....|.+++.-+..|..-+
T Consensus 97 ------------~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~~~ 135 (411)
T 3ghg_C 97 ------------EASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQC 135 (411)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred ------------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 223333445555555556666667777777776665544
No 76
>3ter_A Mammalian stromal interaction molecule-1; dimer, metal binding protein; 2.55A {Caenorhabditis elegans}
Probab=29.16 E-value=24 Score=31.08 Aligned_cols=45 Identities=24% Similarity=0.277 Sum_probs=37.0
Q ss_pred cccchhcccC--CCCCCcHHHHHhhhhhhH---HHhhHhHHHHHHhHHHH
Q 006828 29 QGKTVALTHR--NSMEDPSEQIKRLKSLND---LLVHRSHEQRQQVESLS 73 (629)
Q Consensus 29 ~~~~~~~~~~--~~~~~~~~~~~~l~~~~~---~l~~~~~~~~~~~~~~~ 73 (629)
.-.|+++.|+ ||.+|-|.+|-.+|.--+ .-++|...|=+|||+|.
T Consensus 78 v~gs~~~aHs~~sslD~vD~~Il~Ak~aL~evt~~l~Er~~RW~qIE~Lc 127 (136)
T 3ter_A 78 VLSSLKLATGAASTSDQVDSKIFALKSRMEKIHTLTRETQERWLQIESLC 127 (136)
T ss_dssp ---CCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hheeeeeecCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3347888888 999999999999998776 56799999999999985
No 77
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=28.99 E-value=85 Score=21.92 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 006828 478 TLVDLRKKMESHIGLLAEEKELMQKNL 504 (629)
Q Consensus 478 fL~~Q~~DLe~~~~~L~~e~~~l~~~l 504 (629)
.+....++|++++.+|+..++.+...+
T Consensus 13 el~~r~e~LE~Ri~~LE~KLd~L~~~l 39 (43)
T 2pnv_A 13 DLNERSEDFEKRIVTLETKLETLIGSI 39 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 455566667777777766665555444
No 78
>4aj5_K Spindle and kinetochore-associated protein 2; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=28.93 E-value=2.8e+02 Score=23.83 Aligned_cols=90 Identities=11% Similarity=0.090 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHH--HHHHHHHhh---ccc-hHHHHHHHHHHHHHHhhhhhhHhhhhHhHHHHhhh
Q 006828 486 MESHIGLLAEEKELMQKNLLEAKRNAD--DLRAKMESI---GFN-SDRALSMLKNTAAMVCQSENDIDGQQELVVDEKKL 559 (629)
Q Consensus 486 Le~~~~~L~~e~~~l~~~l~~~~k~i~--~Lk~~I~~l---g~v-aiee~~~~ker~~fl~~q~~D~~ak~~l~~i~~~~ 559 (629)
++..+..|..-...-..++.-+..+++ -...-=... +|| -.++...+++||.-||.|..++.+..
T Consensus 3 me~avdkLe~mFqKA~sDLdyiq~RLe~Ef~~~~Pd~A~e~NPv~Ll~~LsaIk~ry~~L~~q~~~iaaeQ--------- 73 (123)
T 4aj5_K 3 MEAEVDKLELMFQKAESDLDYIQYRLEYEIKTNHPDSASEKNPVTLLKELSVIKSRYQTLYARFKPVAVEQ--------- 73 (123)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhCCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Q ss_pred hhHHHHHHHHHHHHHHHccchhHhHHHHHHHH
Q 006828 560 QGETDQYAAEFQAIVNAFRNREKLVEDMKHRV 591 (629)
Q Consensus 560 ~~m~~~f~~~f~~i~~~F~~~~~~~~~~~~~~ 591 (629)
.+..+.|...+.+--++|-.|-++.
T Consensus 74 -------ke~~d~ir~tL~~tm~miQ~LQ~~t 98 (123)
T 4aj5_K 74 -------KESKSRICATVKKTMNMIQKLQKQT 98 (123)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHhc
No 79
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=28.66 E-value=30 Score=27.34 Aligned_cols=17 Identities=12% Similarity=0.036 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHh
Q 006828 442 DEQRKSGMDLRLKLSEM 458 (629)
Q Consensus 442 ~~~k~~i~~Lk~eI~~L 458 (629)
..+..+=..|..+|..+
T Consensus 20 ~~L~~eH~~LD~~I~~l 36 (76)
T 1zhc_A 20 DKIFEKHNQLDDDIKTA 36 (76)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 80
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=26.58 E-value=1.9e+02 Score=21.66 Aligned_cols=21 Identities=33% Similarity=0.355 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 006828 475 ERETLVDLRKKMESHIGLLAE 495 (629)
Q Consensus 475 RyefL~~Q~~DLe~~~~~L~~ 495 (629)
+...|..+..+|...-..|..
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~ 44 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKE 44 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 81
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=26.44 E-value=4.4e+02 Score=25.33 Aligned_cols=13 Identities=23% Similarity=0.401 Sum_probs=5.6
Q ss_pred HHhhhhhhHHHhh
Q 006828 48 IKRLKSLNDLLVH 60 (629)
Q Consensus 48 ~~~l~~~~~~l~~ 60 (629)
|+.|--|++-||+
T Consensus 27 FkVLSyLSDdlL~ 39 (242)
T 3uux_B 27 FRMLTYISDDLLN 39 (242)
T ss_dssp HHHHTCCCTTGGG
T ss_pred hhhHHhcCHHHHh
Confidence 4444444444443
No 82
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=25.26 E-value=1.9e+02 Score=20.84 Aligned_cols=40 Identities=15% Similarity=0.230 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhhhchHHhHHHHHHHHHHHHHHHHHHHHH
Q 006828 447 SGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKKM 486 (629)
Q Consensus 447 ~i~~Lk~eI~~LG~vN~~AIeEyeevkeRyefL~~Q~~DL 486 (629)
+...|+..+..|+.-|..-.+-+...+.....|..+.++|
T Consensus 10 r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 10 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555555555555555555555555555544444443
No 83
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=24.96 E-value=2.8e+02 Score=22.62 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 006828 188 RLIEMEGKERNLRSEILVLQSDYG 211 (629)
Q Consensus 188 ~l~ele~~~~~le~q~~~l~~e~~ 211 (629)
.+..++..+..+.........+|.
T Consensus 45 ~i~~lE~eL~~~r~e~~~ql~EYq 68 (95)
T 3mov_A 45 MLTDKEREMAEIRDQMQQQLNDYE 68 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 84
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=24.96 E-value=2.4e+02 Score=21.72 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 006828 182 ASRLKDRLIEMEGKERNLRSEI 203 (629)
Q Consensus 182 l~~l~~~l~ele~~~~~le~q~ 203 (629)
+...+..+.++...++.|..++
T Consensus 51 l~~~k~Ei~elrr~iq~L~~el 72 (77)
T 3trt_A 51 LRQAKQESTEYRRQVQSLTMEV 72 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444433333
No 85
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=24.94 E-value=4.7e+02 Score=25.14 Aligned_cols=9 Identities=22% Similarity=0.242 Sum_probs=0.0
Q ss_pred HHHhhHhHH
Q 006828 56 DLLVHRSHE 64 (629)
Q Consensus 56 ~~l~~~~~~ 64 (629)
.-||++.-+
T Consensus 53 ~kll~e~~e 61 (242)
T 3uux_B 53 GKLLTEGGE 61 (242)
T ss_dssp ---------
T ss_pred cchhhccCc
Confidence 345555433
No 86
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=24.63 E-value=3.2e+02 Score=23.12 Aligned_cols=27 Identities=11% Similarity=0.065 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828 391 EIGELRDVVFKLKASCRDQQDKSKQLV 417 (629)
Q Consensus 391 el~~l~~~l~~le~~~~~le~ei~~l~ 417 (629)
++..|.....+...++.++..+.+.+.
T Consensus 78 qL~~Lt~~Re~V~~eL~rLQ~eNd~L~ 104 (112)
T 1x79_B 78 QMAVLMQSREQVSEELVRLQKDNDSLQ 104 (112)
T ss_dssp HHHHHHHHHHHHHTC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccchh
Confidence 333444444444444444444444443
No 87
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=24.61 E-value=2.6e+02 Score=22.16 Aligned_cols=63 Identities=8% Similarity=0.034 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHh
Q 006828 161 LSQACREKDLMKGELDCQVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKNERDGD 223 (629)
Q Consensus 161 l~~L~~~~~~l~~~l~~~~~~l~~l~~~l~ele~~~~~le~q~~~l~~e~~~L~~E~~~l~~~ 223 (629)
+..|...++.--..-..++.++..++........++...+.....+..++..+..++..+...
T Consensus 12 ~leLQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq~~ 74 (81)
T 1wt6_A 12 LRELQEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQAE 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
No 88
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=24.59 E-value=2.2e+02 Score=27.34 Aligned_cols=57 Identities=9% Similarity=0.203 Sum_probs=46.6
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 006828 462 FEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMES 520 (629)
Q Consensus 462 N~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~ 520 (629)
+...|..| +..||..+++....|...++..+.|..++...+...++.+..++.....
T Consensus 161 sde~Ik~y--La~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~ 217 (228)
T 3q0x_A 161 NDSVVKQF--LAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDK 217 (228)
T ss_dssp CHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455554 4789999999999999999999999999999999999888887765543
No 89
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=24.04 E-value=34 Score=26.62 Aligned_cols=31 Identities=23% Similarity=0.323 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006828 472 TRNERETLVDLRKKMESHIGLLAEEKELMQK 502 (629)
Q Consensus 472 vkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~ 502 (629)
|++..++|..++.+|..+.+.|+.|...+..
T Consensus 13 VREEVevLKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 13 VREEVEILKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677789999999999999999998776643
No 90
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=24.01 E-value=2.6e+02 Score=21.93 Aligned_cols=16 Identities=0% Similarity=0.067 Sum_probs=6.9
Q ss_pred HHHHHHHHHHhhhchH
Q 006828 448 GMDLRLKLSEMEKRFE 463 (629)
Q Consensus 448 i~~Lk~eI~~LG~vN~ 463 (629)
...+...+..|....|
T Consensus 14 R~~in~~f~~Lr~lvP 29 (83)
T 1nkp_B 14 RDHIKDSFHSLRDSVP 29 (83)
T ss_dssp HHHHHHHHHHHHTTSG
T ss_pred HHHHHHHHHHHHHHCC
Confidence 3344444444444443
No 91
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=23.33 E-value=2.2e+02 Score=21.00 Aligned_cols=31 Identities=13% Similarity=0.183 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 006828 485 KMESHIGLLAEEKELMQKNLLEAKRNADDLR 515 (629)
Q Consensus 485 DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk 515 (629)
+|+..+..|..+...|...+..+..++..|+
T Consensus 26 ~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 26 SLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444443
No 92
>2hfr_A Fowlicidin-3, cathelicidin; alpha helix, antimicrobial protein; NMR {Synthetic}
Probab=22.92 E-value=14 Score=22.35 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=15.5
Q ss_pred chhhhHhhHHHHHHHHHHHHHh
Q 006828 605 SFWTVVSSATTIFAAASVAYIA 626 (629)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~ 626 (629)
-||-.|+-|-+++||---.|-|
T Consensus 2 RF~P~vpvaintvaaginlyka 23 (27)
T 2hfr_A 2 RFWPLVPVAINTVAAGINLYKA 23 (27)
T ss_dssp CSCSSSSSHHHHHHHHHTSTTT
T ss_pred CccccCcceEEEeehhhhHHHH
Confidence 5899998666666666555644
No 93
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=22.88 E-value=6.6e+02 Score=26.15 Aligned_cols=101 Identities=10% Similarity=-0.041 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHhHHHHHHH--------HHHHHHHHHhHHHHHHHHHHHHHHH
Q 006828 184 RLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKNERDGDIEAFKKE--------KGLLGKRLVGLEKETDDLKLKIKVI 255 (629)
Q Consensus 184 ~l~~~l~ele~~~~~le~q~~~l~~e~~~L~~E~~~l~~~i~~l~~~--------~~~l~~el~el~~ei~~l~~~ie~l 255 (629)
.+.+-+...+..+..--..++.+..++..+..+...+...+...... ....-.....+..++..++..+...
T Consensus 24 ~i~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~~~~~Q~~~~d~~e~~tq~skkml~~~~~~e~~~~~~ 103 (409)
T 1m1j_C 24 GIADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTIYPSEKQTLPQSIEQLTQKSKKIIEEIIRYENTILAH 103 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSTTCCSSCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhhHHHHHHHHHHHHHHHHHHhcch
Q ss_pred HHHHHHHHhhhhHHHHhhHHHHHHHHHHH
Q 006828 256 VKEKNAIEMQNSEQKVINDELEKEVNKLN 284 (629)
Q Consensus 256 ~~el~ele~~~e~l~~el~ele~ela~l~ 284 (629)
...+..++..+..++..|..+...+..+.
T Consensus 104 ~~~i~~l~~~~~~~~~~i~~l~~~i~~l~ 132 (409)
T 1m1j_C 104 ENTIQQLTDMHIMNSNKITQLKQKIAQLE 132 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHH
No 94
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=22.87 E-value=2.6e+02 Score=21.46 Aligned_cols=41 Identities=7% Similarity=0.120 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Q 006828 481 DLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESI 521 (629)
Q Consensus 481 ~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~l 521 (629)
.+.++|......-..++......+.++++.+..|..+|.++
T Consensus 35 ~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 35 SKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44455555555555555555555666666666666666554
No 95
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=22.62 E-value=2.9e+02 Score=21.97 Aligned_cols=16 Identities=13% Similarity=0.185 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 006828 301 ILELENSCSEAMDEKL 316 (629)
Q Consensus 301 i~~le~~l~~~~~~~~ 316 (629)
+..+..++..+..+..
T Consensus 43 iE~~~~~l~ql~~rQr 58 (83)
T 2xdj_A 43 IQENQYQLNQVVERQK 58 (83)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444433333
No 96
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=21.73 E-value=5.4e+02 Score=27.61 Aligned_cols=84 Identities=11% Similarity=0.101 Sum_probs=52.1
Q ss_pred ccHHHHHHHHHHHHHHHHHhhhc-hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----------hHHH
Q 006828 439 KDLDEQRKSGMDLRLKLSEMEKR-FEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQK-----------NLLE 506 (629)
Q Consensus 439 ~~l~~~k~~i~~Lk~eI~~LG~v-N~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~-----------~l~~ 506 (629)
.++.-++.....++..+..=|.. ....++++-.+.+++-.+..+.++|..+...+..++..+.. +...
T Consensus 41 lD~~~ir~n~~~v~~~l~~R~~~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~ 120 (501)
T 1wle_A 41 LDMESLCAYPEDAARALDLRKGELRSKDLPGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQS 120 (501)
T ss_dssp CCHHHHHHSHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHH
T ss_pred cCHHHHHhCHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHH
Confidence 46777777777877777776642 23446777777777777777777777777766666554332 2234
Q ss_pred HHHHHHHHHHHHHhhc
Q 006828 507 AKRNADDLRAKMESIG 522 (629)
Q Consensus 507 ~~k~i~~Lk~~I~~lg 522 (629)
+..++..++.+|..|.
T Consensus 121 l~~~~~~l~~~i~~l~ 136 (501)
T 1wle_A 121 LRARGREIRKQLTLLY 136 (501)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555555443
No 97
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=21.69 E-value=2e+02 Score=30.03 Aligned_cols=57 Identities=11% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh-ccc
Q 006828 468 ELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESI-GFN 524 (629)
Q Consensus 468 EyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~l-g~v 524 (629)
++..++++...|..+...|...+..++.++..+...+.......+.|-+.|.+| |+|
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnI 61 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNI 61 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCe
No 98
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=21.42 E-value=3.3e+02 Score=22.10 Aligned_cols=33 Identities=6% Similarity=0.098 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHhhhchHHhHHHHHHHHHHH
Q 006828 444 QRKSGMDLRLKLSEMEKRFEEKVEELAKTRNER 476 (629)
Q Consensus 444 ~k~~i~~Lk~eI~~LG~vN~~AIeEyeevkeRy 476 (629)
+......|..++..|...|.....|...++.+|
T Consensus 53 LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~ 85 (90)
T 2wt7_B 53 LENEKTQLIQQVEQLKQEVSRLARERDAYKVKS 85 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444433333333333333333
No 99
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=20.87 E-value=2.6e+02 Score=20.77 Aligned_cols=40 Identities=25% Similarity=0.277 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 006828 467 EELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLE 506 (629)
Q Consensus 467 eEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~ 506 (629)
+....+..+++.|..+...|...+..|..++..+..-+..
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~~ 62 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILAA 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 100
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=20.78 E-value=1.5e+02 Score=20.53 Aligned_cols=28 Identities=7% Similarity=0.273 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 006828 485 KMESHIGLLAEEKELMQKNLLEAKRNAD 512 (629)
Q Consensus 485 DLe~~~~~L~~e~~~l~~~l~~~~k~i~ 512 (629)
||..++..+..||....+.+..+++++.
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlk 33 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQ 33 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444333
Done!