Query 006830
Match_columns 629
No_of_seqs 155 out of 183
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 15:06:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006830.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006830hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05701 WEMBL: Weak chloropla 100.0 7.3E-87 1.6E-91 744.8 62.2 513 9-535 1-522 (522)
2 PF05701 WEMBL: Weak chloropla 99.4 2.9E-07 6.3E-12 104.4 53.4 277 239-546 214-512 (522)
3 KOG0161 Myosin class II heavy 98.4 0.028 6.1E-07 71.8 60.8 72 124-195 1477-1548(1930)
4 TIGR02169 SMC_prok_A chromosom 98.3 0.025 5.3E-07 69.7 49.9 42 53-94 165-206 (1164)
5 KOG0161 Myosin class II heavy 98.2 0.054 1.2E-06 69.4 58.9 198 297-508 1107-1308(1930)
6 COG1196 Smc Chromosome segrega 98.2 0.047 1E-06 68.1 48.4 195 53-260 167-364 (1163)
7 TIGR02168 SMC_prok_B chromosom 98.1 0.058 1.2E-06 66.3 47.2 40 53-92 167-206 (1179)
8 TIGR02169 SMC_prok_A chromosom 98.1 0.077 1.7E-06 65.4 47.8 31 64-94 169-199 (1164)
9 PF10174 Cast: RIM-binding pro 97.8 0.19 4.1E-06 59.9 53.3 70 38-107 239-308 (775)
10 TIGR00606 rad50 rad50. This fa 97.7 0.4 8.7E-06 60.7 49.9 42 50-91 743-784 (1311)
11 COG1196 Smc Chromosome segrega 97.5 0.51 1.1E-05 59.1 48.7 44 211-257 813-856 (1163)
12 PRK02224 chromosome segregatio 97.5 0.5 1.1E-05 57.2 61.0 21 239-259 408-428 (880)
13 PRK02224 chromosome segregatio 97.2 0.97 2.1E-05 54.7 62.8 37 299-335 410-446 (880)
14 TIGR02168 SMC_prok_B chromosom 97.1 1.3 2.9E-05 54.5 65.9 43 300-342 676-718 (1179)
15 KOG0971 Microtubule-associated 97.0 1.3 2.9E-05 52.7 37.8 35 224-261 323-357 (1243)
16 PF10174 Cast: RIM-binding pro 96.9 1.7 3.6E-05 52.1 56.1 65 30-95 38-103 (775)
17 PF00261 Tropomyosin: Tropomyo 96.8 0.72 1.6E-05 47.4 25.7 60 307-366 126-185 (237)
18 PF00038 Filament: Intermediat 96.8 1 2.2E-05 47.8 35.8 45 299-343 200-244 (312)
19 TIGR00606 rad50 rad50. This fa 96.5 4.3 9.3E-05 51.7 59.8 179 216-418 574-784 (1311)
20 PF00261 Tropomyosin: Tropomyo 96.5 1.3 2.7E-05 45.6 28.6 55 40-94 4-58 (237)
21 KOG0994 Extracellular matrix g 96.5 3.5 7.5E-05 50.5 44.0 109 297-409 1450-1566(1758)
22 PF07888 CALCOCO1: Calcium bin 96.4 2.6 5.6E-05 48.3 43.0 19 72-90 164-182 (546)
23 PF01576 Myosin_tail_1: Myosin 96.3 0.0014 3E-08 78.9 1.1 43 43-85 327-369 (859)
24 PF00038 Filament: Intermediat 96.1 2.3 5.1E-05 45.0 30.4 243 307-559 3-253 (312)
25 KOG0933 Structural maintenance 96.1 5.2 0.00011 48.5 30.0 192 213-439 685-876 (1174)
26 PF01576 Myosin_tail_1: Myosin 96.1 0.0016 3.5E-08 78.3 0.0 98 319-416 353-450 (859)
27 PF07888 CALCOCO1: Calcium bin 96.0 4 8.7E-05 46.9 45.1 170 225-424 282-456 (546)
28 KOG0996 Structural maintenance 96.0 6.2 0.00013 48.6 40.0 41 37-77 267-307 (1293)
29 KOG0977 Nuclear envelope prote 95.9 1.2 2.6E-05 50.9 22.0 171 225-418 41-216 (546)
30 KOG0933 Structural maintenance 95.6 7.9 0.00017 47.1 35.5 37 124-164 734-770 (1174)
31 KOG4674 Uncharacterized conser 95.6 11 0.00025 48.7 54.4 61 42-105 634-694 (1822)
32 KOG0996 Structural maintenance 95.0 13 0.00028 46.0 57.4 62 494-556 977-1039(1293)
33 PF09726 Macoilin: Transmembra 94.8 7.5 0.00016 46.3 24.5 163 307-477 459-622 (697)
34 KOG0250 DNA repair protein RAD 94.4 17 0.00037 44.7 36.7 31 230-260 282-312 (1074)
35 COG1579 Zn-ribbon protein, pos 94.2 6.4 0.00014 40.8 19.4 67 385-451 89-155 (239)
36 KOG0964 Structural maintenance 94.2 18 0.00039 44.0 37.8 72 124-195 223-294 (1200)
37 COG4372 Uncharacterized protei 93.9 12 0.00027 41.0 28.9 193 43-259 73-275 (499)
38 PF10473 CENP-F_leu_zip: Leuci 93.3 6.5 0.00014 37.5 16.3 28 128-155 56-83 (140)
39 KOG0999 Microtubule-associated 93.1 20 0.00044 41.1 26.9 69 70-149 6-75 (772)
40 KOG0999 Microtubule-associated 93.0 21 0.00045 41.0 28.6 160 173-375 8-167 (772)
41 KOG0971 Microtubule-associated 93.0 27 0.00058 42.3 38.8 136 297-446 314-450 (1243)
42 PF07926 TPR_MLP1_2: TPR/MLP1/ 92.9 8.1 0.00018 36.2 20.4 82 44-156 3-84 (132)
43 KOG0994 Extracellular matrix g 92.8 32 0.0007 42.7 39.0 203 128-365 1419-1634(1758)
44 PF05557 MAD: Mitotic checkpoi 92.6 0.47 1E-05 56.4 9.5 47 220-266 282-328 (722)
45 KOG0977 Nuclear envelope prote 92.5 25 0.00053 40.7 32.2 127 52-188 93-219 (546)
46 KOG0976 Rho/Rac1-interacting s 92.3 31 0.00067 41.3 51.1 150 350-536 365-518 (1265)
47 PRK11637 AmiB activator; Provi 91.8 25 0.00055 39.2 29.1 21 130-150 46-66 (428)
48 PHA02562 46 endonuclease subun 90.3 38 0.00083 38.7 29.3 46 216-261 231-280 (562)
49 KOG0963 Transcription factor/C 90.0 45 0.00097 38.9 30.5 122 124-266 235-360 (629)
50 PRK01156 chromosome segregatio 90.0 55 0.0012 40.0 49.9 343 41-440 302-722 (895)
51 KOG0250 DNA repair protein RAD 89.9 59 0.0013 40.3 35.6 254 43-343 206-464 (1074)
52 COG1579 Zn-ribbon protein, pos 88.9 32 0.00069 35.8 18.6 47 383-429 94-140 (239)
53 PF10498 IFT57: Intra-flagella 87.7 27 0.00058 38.4 17.0 63 309-371 253-315 (359)
54 KOG4673 Transcription factor T 87.2 71 0.0015 37.8 46.5 105 318-432 519-631 (961)
55 KOG4674 Uncharacterized conser 86.7 1.2E+02 0.0026 40.0 55.5 24 515-538 1053-1076(1822)
56 PRK04778 septation ring format 86.4 72 0.0016 37.1 41.6 77 297-373 313-399 (569)
57 PRK04863 mukB cell division pr 85.2 1.3E+02 0.0029 39.1 46.2 87 400-486 1089-1200(1486)
58 PRK03918 chromosome segregatio 84.9 1E+02 0.0022 37.5 63.4 11 475-485 658-668 (880)
59 PRK11637 AmiB activator; Provi 84.5 74 0.0016 35.5 32.0 52 41-92 44-95 (428)
60 PHA02562 46 endonuclease subun 84.4 82 0.0018 36.0 29.7 45 217-261 225-273 (562)
61 KOG0972 Huntingtin interacting 81.6 64 0.0014 34.4 15.5 64 309-372 260-323 (384)
62 PRK04863 mukB cell division pr 81.3 1.9E+02 0.004 37.9 40.5 48 45-92 280-327 (1486)
63 PF08317 Spc7: Spc7 kinetochor 80.8 87 0.0019 33.8 18.6 60 382-441 213-272 (325)
64 PRK09039 hypothetical protein; 80.7 93 0.002 34.0 20.8 38 304-341 119-156 (343)
65 KOG1029 Endocytic adaptor prot 80.6 1.4E+02 0.003 36.0 37.4 133 313-455 470-613 (1118)
66 KOG0979 Structural maintenance 79.2 1.7E+02 0.0037 36.2 27.7 172 133-346 176-356 (1072)
67 PRK12472 hypothetical protein; 79.0 68 0.0015 36.6 15.6 81 395-512 207-287 (508)
68 KOG0964 Structural maintenance 74.3 2.3E+02 0.005 35.2 33.7 43 517-559 856-898 (1200)
69 PF11570 E2R135: Coiled-coil r 72.6 88 0.0019 29.6 13.4 117 43-164 14-131 (136)
70 PF15619 Lebercilin: Ciliary p 71.7 1.2E+02 0.0025 30.6 25.3 124 300-426 67-191 (194)
71 PF05667 DUF812: Protein of un 71.4 2.2E+02 0.0047 33.6 37.0 35 300-334 490-524 (594)
72 PF00769 ERM: Ezrin/radixin/mo 69.0 1.5E+02 0.0033 30.8 18.1 47 48-94 2-48 (246)
73 PF08317 Spc7: Spc7 kinetochor 68.9 1.7E+02 0.0037 31.5 24.8 113 124-259 71-189 (325)
74 PRK09039 hypothetical protein; 68.4 1.9E+02 0.004 31.6 21.1 39 392-430 123-161 (343)
75 smart00787 Spc7 Spc7 kinetocho 67.2 1.9E+02 0.0041 31.3 18.3 61 381-441 207-267 (312)
76 PF07926 TPR_MLP1_2: TPR/MLP1/ 65.8 1.2E+02 0.0025 28.4 16.0 47 384-437 58-104 (132)
77 PF09726 Macoilin: Transmembra 65.0 3.1E+02 0.0068 33.0 27.9 35 72-106 432-466 (697)
78 PF05335 DUF745: Protein of un 64.4 1.6E+02 0.0035 29.5 17.3 107 339-445 70-176 (188)
79 COG1340 Uncharacterized archae 64.0 2.1E+02 0.0046 30.7 33.2 64 377-440 192-255 (294)
80 PF12128 DUF3584: Protein of u 63.4 4.2E+02 0.009 33.9 65.6 101 298-398 604-705 (1201)
81 PF12718 Tropomyosin_1: Tropom 63.3 1.4E+02 0.0031 28.5 18.4 36 381-416 76-111 (143)
82 PF10498 IFT57: Intra-flagella 62.8 2.5E+02 0.0053 31.1 16.5 127 300-429 219-351 (359)
83 TIGR02680 conserved hypothetic 62.7 4.5E+02 0.0099 34.1 35.9 39 499-537 443-481 (1353)
84 KOG4673 Transcription factor T 62.4 3.4E+02 0.0073 32.5 54.7 50 316-365 552-602 (961)
85 PF10473 CENP-F_leu_zip: Leuci 62.4 1.5E+02 0.0032 28.4 18.9 54 309-362 11-64 (140)
86 KOG0612 Rho-associated, coiled 61.7 4.4E+02 0.0095 33.6 41.3 41 49-89 492-532 (1317)
87 PF05483 SCP-1: Synaptonemal c 60.0 3.7E+02 0.008 32.2 44.8 109 301-409 450-565 (786)
88 PRK15048 methyl-accepting chem 59.8 3.1E+02 0.0068 31.3 32.5 35 426-460 372-411 (553)
89 smart00787 Spc7 Spc7 kinetocho 59.4 2.6E+02 0.0056 30.2 17.0 42 301-342 204-245 (312)
90 PTZ00464 SNF-7-like protein; P 58.9 2.1E+02 0.0047 29.1 13.7 24 38-61 26-49 (211)
91 COG4942 Membrane-bound metallo 57.3 3.3E+02 0.0071 30.8 30.3 17 305-321 161-177 (420)
92 PF08172 CASP_C: CASP C termin 55.8 1.7E+02 0.0037 30.5 12.1 57 289-347 76-132 (248)
93 TIGR03185 DNA_S_dndD DNA sulfu 55.6 4.1E+02 0.009 31.4 35.9 24 323-346 392-415 (650)
94 KOG0018 Structural maintenance 54.6 5.4E+02 0.012 32.4 34.6 54 297-350 852-905 (1141)
95 PF06818 Fez1: Fez1; InterPro 53.9 2.6E+02 0.0056 28.5 16.7 74 297-370 13-86 (202)
96 PF05622 HOOK: HOOK protein; 53.0 4.5 9.8E-05 48.2 0.0 13 196-208 292-304 (713)
97 PF05266 DUF724: Protein of un 51.5 82 0.0018 31.6 8.6 123 7-153 66-188 (190)
98 PF05384 DegS: Sensor protein 51.4 2.5E+02 0.0053 27.5 17.3 119 305-439 6-124 (159)
99 PF12128 DUF3584: Protein of u 50.8 6.5E+02 0.014 32.3 62.4 35 483-517 721-755 (1201)
100 PRK10884 SH3 domain-containing 50.3 2.2E+02 0.0048 28.9 11.6 16 325-340 96-111 (206)
101 PF10234 Cluap1: Clusterin-ass 49.1 1.2E+02 0.0026 32.1 9.7 69 299-367 167-235 (267)
102 PRK04778 septation ring format 48.5 5E+02 0.011 30.3 42.9 159 297-456 259-426 (569)
103 PF15290 Syntaphilin: Golgi-lo 48.3 2.3E+02 0.0051 30.2 11.5 82 124-240 57-138 (305)
104 KOG2196 Nuclear porin [Nuclear 46.9 2.7E+02 0.0058 29.2 11.4 60 202-261 89-148 (254)
105 PF15294 Leu_zip: Leucine zipp 46.0 4E+02 0.0087 28.4 15.2 123 327-453 130-261 (278)
106 PF11932 DUF3450: Protein of u 45.9 3.6E+02 0.0077 27.8 13.7 74 316-389 43-116 (251)
107 PF08826 DMPK_coil: DMPK coile 45.6 94 0.002 25.6 6.6 45 326-370 15-59 (61)
108 KOG1962 B-cell receptor-associ 44.2 1.9E+02 0.004 29.8 9.9 80 222-345 130-209 (216)
109 PF07798 DUF1640: Protein of u 41.4 3.5E+02 0.0076 26.5 16.4 33 228-260 36-68 (177)
110 PF07106 TBPIP: Tat binding pr 40.8 3.2E+02 0.0069 26.4 10.8 62 303-371 74-137 (169)
111 PF03962 Mnd1: Mnd1 family; I 39.6 4E+02 0.0086 26.6 12.6 94 305-409 66-159 (188)
112 PF05335 DUF745: Protein of un 38.2 4.3E+02 0.0093 26.5 16.5 43 381-423 133-175 (188)
113 PF05377 FlaC_arch: Flagella a 38.0 1.1E+02 0.0023 24.8 5.6 36 311-346 3-38 (55)
114 PF08614 ATG16: Autophagy prot 37.9 3.2E+02 0.007 27.1 10.5 43 299-341 79-121 (194)
115 PF08614 ATG16: Autophagy prot 37.7 2.4E+02 0.0053 27.9 9.6 106 318-437 70-175 (194)
116 PF07798 DUF1640: Protein of u 37.2 4.1E+02 0.0088 26.0 14.4 15 407-421 139-153 (177)
117 PF04111 APG6: Autophagy prote 36.8 5.6E+02 0.012 27.6 12.8 69 387-455 66-134 (314)
118 PF07889 DUF1664: Protein of u 36.7 3.7E+02 0.008 25.3 12.2 81 319-430 40-120 (126)
119 PRK15178 Vi polysaccharide exp 36.3 6.9E+02 0.015 28.4 15.6 31 411-441 349-379 (434)
120 TIGR01010 BexC_CtrB_KpsE polys 36.3 5.9E+02 0.013 27.6 15.7 44 323-366 215-258 (362)
121 KOG4809 Rab6 GTPase-interactin 35.3 7.9E+02 0.017 28.8 30.7 58 195-261 313-370 (654)
122 COG4477 EzrA Negative regulato 35.2 7.9E+02 0.017 28.7 40.1 192 222-437 251-464 (570)
123 COG5420 Uncharacterized conser 35.1 1.6E+02 0.0034 24.5 6.2 18 127-144 51-68 (71)
124 PF05622 HOOK: HOOK protein; 35.0 13 0.00028 44.4 0.0 32 124-155 318-349 (713)
125 PF05557 MAD: Mitotic checkpoi 34.7 3.1E+02 0.0067 32.9 11.5 40 414-456 607-646 (722)
126 PF09730 BicD: Microtubule-ass 34.3 9.2E+02 0.02 29.3 43.8 51 406-456 405-455 (717)
127 PF09787 Golgin_A5: Golgin sub 34.2 7.7E+02 0.017 28.3 29.4 198 128-340 113-313 (511)
128 PF03962 Mnd1: Mnd1 family; I 34.1 4.9E+02 0.011 26.0 12.0 28 297-324 138-165 (188)
129 PRK10884 SH3 domain-containing 34.0 5.2E+02 0.011 26.3 11.7 25 299-323 91-115 (206)
130 KOG0804 Cytoplasmic Zn-finger 33.7 7.7E+02 0.017 28.2 15.9 42 213-254 411-453 (493)
131 PF12325 TMF_TATA_bd: TATA ele 33.2 4E+02 0.0088 24.8 12.7 45 40-84 19-63 (120)
132 COG3883 Uncharacterized protei 32.9 6.2E+02 0.014 26.8 23.3 42 218-259 164-206 (265)
133 TIGR01843 type_I_hlyD type I s 32.8 6.6E+02 0.014 27.1 23.1 19 299-317 79-97 (423)
134 PF05010 TACC: Transforming ac 31.7 5.7E+02 0.012 26.1 19.5 133 302-437 34-174 (207)
135 PF08826 DMPK_coil: DMPK coile 31.5 3E+02 0.0065 22.7 7.6 43 43-85 17-59 (61)
136 KOG0612 Rho-associated, coiled 31.2 1.3E+03 0.027 29.9 42.1 45 327-371 607-651 (1317)
137 KOG1003 Actin filament-coating 31.2 5.8E+02 0.013 26.0 23.4 51 216-266 22-76 (205)
138 COG2433 Uncharacterized conser 31.1 6.9E+02 0.015 29.6 12.7 20 7-26 296-315 (652)
139 PF10234 Cluap1: Clusterin-ass 31.0 4E+02 0.0086 28.3 10.2 55 319-373 166-220 (267)
140 PF10481 CENP-F_N: Cenp-F N-te 30.3 7E+02 0.015 26.7 15.3 72 297-368 42-113 (307)
141 PF05529 Bap31: B-cell recepto 30.2 2.5E+02 0.0055 27.6 8.3 51 40-90 121-172 (192)
142 PF12325 TMF_TATA_bd: TATA ele 29.8 4.6E+02 0.01 24.4 13.9 43 299-341 21-63 (120)
143 COG2433 Uncharacterized conser 29.6 1E+03 0.022 28.3 18.1 50 297-346 418-467 (652)
144 PF12718 Tropomyosin_1: Tropom 29.4 5E+02 0.011 24.7 17.2 53 298-350 18-70 (143)
145 PF11559 ADIP: Afadin- and alp 28.3 5.1E+02 0.011 24.4 15.8 43 300-342 79-121 (151)
146 PF05276 SH3BP5: SH3 domain-bi 27.6 7.2E+02 0.016 25.9 26.4 53 476-528 173-225 (239)
147 KOG2077 JNK/SAPK-associated pr 27.3 1.1E+03 0.024 27.9 14.6 72 353-424 332-417 (832)
148 PRK00409 recombination and DNA 27.2 1.2E+03 0.026 28.4 16.2 43 301-343 502-544 (782)
149 KOG0980 Actin-binding protein 26.5 1.3E+03 0.029 28.6 32.2 225 56-356 335-567 (980)
150 PF04156 IncA: IncA protein; 26.3 6.1E+02 0.013 24.6 15.9 57 302-358 82-138 (191)
151 KOG4643 Uncharacterized coiled 26.1 1.4E+03 0.031 28.9 47.0 114 30-155 163-281 (1195)
152 PF11559 ADIP: Afadin- and alp 25.8 5.7E+02 0.012 24.1 13.8 9 252-260 4-12 (151)
153 PF04582 Reo_sigmaC: Reovirus 25.5 1.5E+02 0.0032 32.3 6.0 119 310-428 30-148 (326)
154 PRK13729 conjugal transfer pil 25.5 1.9E+02 0.0041 33.1 7.0 44 218-261 75-122 (475)
155 KOG0995 Centromere-associated 25.4 1.2E+03 0.025 27.6 44.4 41 218-258 352-393 (581)
156 PF07106 TBPIP: Tat binding pr 25.2 3E+02 0.0065 26.5 7.7 62 297-365 75-138 (169)
157 PF15254 CCDC14: Coiled-coil d 24.1 1.4E+03 0.03 28.0 16.1 119 158-331 440-559 (861)
158 TIGR01069 mutS2 MutS2 family p 23.8 1.4E+03 0.03 27.9 15.5 42 302-343 498-539 (771)
159 COG4372 Uncharacterized protei 23.5 1.1E+03 0.024 26.6 26.1 100 40-144 77-178 (499)
160 PF14662 CCDC155: Coiled-coil 23.0 8E+02 0.017 24.8 24.0 44 47-90 18-61 (193)
161 PF15070 GOLGA2L5: Putative go 22.7 1.3E+03 0.029 27.3 37.3 101 326-440 199-306 (617)
162 PRK10869 recombination and rep 22.5 1.3E+03 0.027 27.0 22.9 29 123-151 156-184 (553)
163 COG4942 Membrane-bound metallo 22.2 1.2E+03 0.025 26.5 32.9 52 43-94 37-88 (420)
164 PF00769 ERM: Ezrin/radixin/mo 22.1 9E+02 0.019 25.1 17.6 18 512-529 186-203 (246)
165 PF10146 zf-C4H2: Zinc finger- 21.7 9.1E+02 0.02 25.0 14.9 41 381-421 63-103 (230)
166 TIGR03185 DNA_S_dndD DNA sulfu 21.6 1.4E+03 0.03 27.1 42.2 25 316-340 392-416 (650)
167 PF02063 MARCKS: MARCKS family 21.2 37 0.00081 35.9 0.5 21 608-628 132-155 (294)
168 PF13851 GAS: Growth-arrest sp 20.9 8.6E+02 0.019 24.4 22.0 49 300-348 85-133 (201)
169 KOG3595 Dyneins, heavy chain [ 20.8 2E+03 0.043 28.6 16.4 52 317-368 698-749 (1395)
170 PF03915 AIP3: Actin interacti 20.8 1.3E+03 0.027 26.3 17.6 168 130-371 150-320 (424)
171 KOG1029 Endocytic adaptor prot 20.7 1.6E+03 0.035 27.6 30.8 23 123-145 319-341 (1118)
172 KOG0249 LAR-interacting protei 20.7 1.6E+03 0.034 27.4 19.1 41 351-391 217-257 (916)
No 1
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=100.00 E-value=7.3e-87 Score=744.76 Aligned_cols=513 Identities=40% Similarity=0.472 Sum_probs=476.5
Q ss_pred ccccchhhhhhhhcCCCCCcccccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006830 9 QRRTGSVKAAGNMYGGSPSVKKSHLDIPESSSSRARELHMARRDISRYKESRKAAESVKAQAESELSTARKTVKDLACRI 88 (629)
Q Consensus 9 ~aP~eSVK~Avs~FG~~~~~kk~~~~~~e~~~~~e~eL~~aq~el~k~Keql~~aE~~K~qal~ELe~akr~ieeL~~kL 88 (629)
++||+|||+|||+|||++||++| +.++++..++.||+++|+||++||+|+.++|.+|.+|++||+.||++|++|+++|
T Consensus 1 ~apf~SVk~Avs~FG~~~~~k~~--~~~e~~~~~e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kL 78 (522)
T PF05701_consen 1 SAPFESVKEAVSLFGGSIDWKKH--QSLERVKEKETELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKL 78 (522)
T ss_pred CCCChHHHHHHHHcCCccccccC--CchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999766 3338899999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhcc--hhhHHHHHHhhhchhhhhhhh---hhh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006830 89 EKTNHQAIP--SMRYVERLEKSSGIEENVLAE---RSR----ESHRYAEVMRELESVKQELSKLKLDMASVLEEKSRAEK 159 (629)
Q Consensus 89 e~a~~~~~~--~~~ele~~r~~e~~~~~~~~~---~~~----e~~qya~~~~EL~svk~EL~kl~~e~~~~~eek~~A~~ 159 (629)
+.++.+..+ .++++..+|+.+++++....+ +.. .++||+.++++|++|++||.+++++|++++++|+.|++
T Consensus 79 e~~~~~~~~a~~~~e~~k~r~~e~e~~~~~~~~~~~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~ 158 (522)
T PF05701_consen 79 EKAQAEEKQAEEDSELAKFRAKELEQGIAEEASVAWKAELESAREQYASAVAELDSVKQELEKLRQELASALDAKNAALK 158 (522)
T ss_pred HHHHHHHHHHHHhhHHhHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998777 456778888888887665532 222 27999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 006830 160 EIEASSLKMRSNSSSVEGLRKEIEEVNEEQVLVELARIEALKEYGEIEAEREKEANEFSASMEVAKEKLKDLTEEIDHCK 239 (629)
Q Consensus 160 ~a~ea~~~a~~~~~~~~~l~kei~~~~e~~~~~ela~i~a~~e~~~i~a~~e~~~~~~~~~le~ae~el~~Lk~el~~~k 239 (629)
+++++++.+..|..++++|..+|..++++|..+.++++++.+++..|..++++++..|...|++++++|+.|+++++.++
T Consensus 159 ~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~~~~k 238 (522)
T PF05701_consen 159 QAEEAVSAAEENEEKVEELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEELEAAK 238 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhchhhhhhhhhcCCCcccccccccccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 006830 240 ELENKLAVTLYDVNFLHNELKSVKDKDKLVQGNDSLKGTHSIYQSGEELEGSPLLPSKSVKEELEAAKKELAAIKEEGFR 319 (629)
Q Consensus 240 ~Le~kL~ets~~ie~Lq~El~~ak~~e~~~~~~~s~~~~~~~~~~~~~~e~~~~~~~~~~~~eL~~AK~~L~~~~~E~~~ 319 (629)
+|+++|+.++.+|..|+.+|+.++..+... .. ...+........+ ++++.+|+++|.+|+++++|+++
T Consensus 239 ~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~--~~--------~~~~~~~~~~~~l--~s~~~ELe~ak~~L~~~k~E~~~ 306 (522)
T PF05701_consen 239 DLESKLAEASAELESLQAELEAAKESKLEE--EA--------EAKEKSSELQSSL--ASAKKELEEAKKELEKAKEEASS 306 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hH--------HhhhhhhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999877643221 00 0011111233345 88999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHHH
Q 006830 320 FMASMDVIRNELRHVREETARLKKGEEKTELTVQNLNSKLLRAKAKLEAVSAAEEKANGIAGNLAFTLEQLKTEAEAAKK 399 (629)
Q Consensus 320 l~~~vesLr~ELe~~K~el~~lke~e~~a~~~v~sL~~EL~k~kseLe~~~~~Eek~~~~~~~l~~~Leql~~Eae~Ak~ 399 (629)
|+.+|+||+.||+++|.++..++++++.+++.|++|+.+|++++++|+.++..+.++++.+.+|+..|+|++.|++.|+.
T Consensus 307 L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ 386 (522)
T PF05701_consen 307 LRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKK 386 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHhhHHhhhhccCCCCCccccHHhhH
Q 006830 400 EKELVTEETAKIKEEIQKTEAEIYSAEEKIETSMQELNAVKSSEALAFDNLKSLIEKTMQARASASQNSSSITISNFEYE 479 (629)
Q Consensus 400 ea~~~~~E~~~~k~E~e~~ka~~~t~E~rL~aa~kE~EAakasE~lAla~ikaL~e~~~~~~~~~~~~~~~Itis~eEye 479 (629)
++..++.|+.+++.+++++++.+.|++.||+++++|++++|+||++|+++|++|+++.++.+.+.++++++||||++||+
T Consensus 387 ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala~ik~l~e~~~~~~~~~~~~~~~Vtls~eEy~ 466 (522)
T PF05701_consen 387 EAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALALAEIKALSESESSSRASDSESSSKVTLSLEEYE 466 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCCCeeecHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988888776678899999999999
Q ss_pred HHHhhHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 006830 480 YLRGRAVGAEELADKKVAAAQAWIEALKASEKEILMKMEMAHREIRHTRVEEEKEV 535 (629)
Q Consensus 480 ~L~~ka~eaEe~a~kkvaaA~aqve~akasE~e~l~kLe~~~~ei~~~k~ale~Al 535 (629)
+|++|++++++++++||++||+||+++|+|++++|+||++++++|+++|.+|..|+
T Consensus 467 ~L~~ka~e~ee~a~kkva~A~aqve~ak~se~e~l~kle~~~~e~~~~k~al~~Al 522 (522)
T PF05701_consen 467 SLSKKAEEAEELAEKKVAAAMAQVEAAKASEKEILEKLEEAMKEIEERKEALEEAL 522 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999885
No 2
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=99.37 E-value=2.9e-07 Score=104.35 Aligned_cols=277 Identities=23% Similarity=0.267 Sum_probs=187.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhchhhhhhhhhcCCCcccccccccccccccCCCCCCchhHHHHHHHHHH-HHHH---HH
Q 006830 239 KELENKLAVTLYDVNFLHNELKSVKDKDKLVQGNDSLKGTHSIYQSGEELEGSPLLPSKSVKEELEAAKK-ELAA---IK 314 (629)
Q Consensus 239 k~Le~kL~ets~~ie~Lq~El~~ak~~e~~~~~~~s~~~~~~~~~~~~~~e~~~~~~~~~~~~eL~~AK~-~L~~---~~ 314 (629)
..++..|..+...|..|+.++..++.+++++... ...+ ..+..+|..++. .+.. .+
T Consensus 214 ~~~~~~leeae~~l~~L~~e~~~~k~Le~kL~~a------------------~~~l--~~Lq~El~~~~~~~l~~~~~~~ 273 (522)
T PF05701_consen 214 EEWEKELEEAEEELEELKEELEAAKDLESKLAEA------------------SAEL--ESLQAELEAAKESKLEEEAEAK 273 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHH--HHHHHHHHHHHHHHHhhhHHhh
Confidence 4566677788888888888887777776553221 1123 456677776665 3333 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHH
Q 006830 315 EEGFRFMASMDVIRNELRHVREETARLKKGEEKTELTVQNLNSKLLRAKAKLEAVSAAEEKANGIAGNLAFTLEQLKTEA 394 (629)
Q Consensus 315 ~E~~~l~~~vesLr~ELe~~K~el~~lke~e~~a~~~v~sL~~EL~k~kseLe~~~~~Eek~~~~~~~l~~~Leql~~Ea 394 (629)
.....++..+.++..||+..+.+|..++.........|.+|..+|.+.+.++..++..+..+...+.+|...|.++..+.
T Consensus 274 ~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eL 353 (522)
T PF05701_consen 274 EKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSEL 353 (522)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHH
Confidence 44567778899999999999999999999999999999999999999999999999988888888899999999998887
Q ss_pred HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH-------HHHHHHhHHHhhHHh
Q 006830 395 EAAKKEK-------ELVTEETAKIKEEIQKTEAEIYSAEEKIETSMQELNAVKSSEAL-------AFDNLKSLIEKTMQA 460 (629)
Q Consensus 395 e~Ak~ea-------~~~~~E~~~~k~E~e~~ka~~~t~E~rL~aa~kE~EAakasE~l-------Ala~ikaL~e~~~~~ 460 (629)
+.++... ..+...+..+..|+++++.....+...+.-+..+++.++++=.- |+..+.+.-.+...+
T Consensus 354 ea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~A 433 (522)
T PF05701_consen 354 EAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALA 433 (522)
T ss_pred HHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6554433 34666788888888888888888888888888888877554322 222222211111111
Q ss_pred hhh---ccCCCCCccccH-HhhHHHHhhHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 006830 461 RAS---ASQNSSSITISN-FEYEYLRGRAVGAEELADKKVAAAQAWIEALKASEKEILMKMEMAHREIRHTRVEEEKEVF 536 (629)
Q Consensus 461 ~~~---~~~~~~~Itis~-eEye~L~~ka~eaEe~a~kkvaaA~aqve~akasE~e~l~kLe~~~~ei~~~k~ale~Al~ 536 (629)
... .+++.+....+. ..+...+--..+.+.+.. -+..++.-+-+|+..++-.|+..+......+.
T Consensus 434 la~ik~l~e~~~~~~~~~~~~~~~Vtls~eEy~~L~~-----------ka~e~ee~a~kkva~A~aqve~ak~se~e~l~ 502 (522)
T PF05701_consen 434 LAEIKALSESESSSRASDSESSSKVTLSLEEYESLSK-----------KAEEAEELAEKKVAAAMAQVEAAKASEKEILE 502 (522)
T ss_pred HHHHHHhhcccccccccccCCCCCeeecHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 100 111111111111 122333333344455443 23455667778999999999999999999999
Q ss_pred hHHHhHhhhH
Q 006830 537 KSERTRSTKR 546 (629)
Q Consensus 537 raE~A~~aK~ 546 (629)
+++.+...=.
T Consensus 503 kle~~~~e~~ 512 (522)
T PF05701_consen 503 KLEEAMKEIE 512 (522)
T ss_pred HHHHHHHHHH
Confidence 9988775433
No 3
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.35 E-value=0.028 Score=71.84 Aligned_cols=72 Identities=19% Similarity=0.275 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 006830 124 HRYAEVMRELESVKQELSKLKLDMASVLEEKSRAEKEIEASSLKMRSNSSSVEGLRKEIEEVNEEQVLVELA 195 (629)
Q Consensus 124 ~qya~~~~EL~svk~EL~kl~~e~~~~~eek~~A~~~a~ea~~~a~~~~~~~~~l~kei~~~~e~~~~~ela 195 (629)
.+|..++..++.+..+-..++.+..-+...+..+-+.+++.......-..-..+|...++++-.++...+.+
T Consensus 1477 ~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE~~ 1548 (1930)
T KOG0161|consen 1477 NALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEEDK 1548 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 566666666666666666666666666666666555555444444333334445555555555444333333
No 4
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.32 E-value=0.025 Score=69.69 Aligned_cols=42 Identities=7% Similarity=0.226 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006830 53 ISRYKESRKAAESVKAQAESELSTARKTVKDLACRIEKTNHQ 94 (629)
Q Consensus 53 l~k~Keql~~aE~~K~qal~ELe~akr~ieeL~~kLe~a~~~ 94 (629)
+..|..++..+...-.++...+.+.+..+.+|..+++.+...
T Consensus 165 ~~~~~~~~~~~~~~l~~~~~~l~el~~~~~~L~~q~~~l~~~ 206 (1164)
T TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRRE 206 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777766666666777777777777777777766543
No 5
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.22 E-value=0.054 Score=69.41 Aligned_cols=198 Identities=24% Similarity=0.237 Sum_probs=107.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHH-HH
Q 006830 297 KSVKEELEAAKKELAAIKEEGFRFMASMDVIRNELRHVREETARLKKGEEKTELTVQNLNSKLLRAKAKLEAVSAAE-EK 375 (629)
Q Consensus 297 ~~~~~eL~~AK~~L~~~~~E~~~l~~~vesLr~ELe~~K~el~~lke~e~~a~~~v~sL~~EL~k~kseLe~~~~~E-ek 375 (629)
..+..+|+.-+..+.++.-.-..|...++.|+.+|+..=.......+....-...+..|...|.......+.....- .+
T Consensus 1107 ~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~ 1186 (1930)
T KOG0161|consen 1107 KELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKK 1186 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 55677777777777777777778888888888888777444444444444555566666665555554444332221 23
Q ss_pred hhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHH
Q 006830 376 ANGIAGNLAFTLEQLKTEAEAAKKEKELVTEETAKIKEEIQKTEAEIYSAEEKIETSMQELNAVKSSEALAFDNLKSLIE 455 (629)
Q Consensus 376 ~~~~~~~l~~~Leql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~~~t~E~rL~aa~kE~EAakasE~lAla~ikaL~e 455 (629)
.......+...++++...-....++...++.+...+..++.+.-..-...+.+. +..|+. +.++..-.+
T Consensus 1187 ~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~----------k~~E~~-l~elq~k~~ 1255 (1930)
T KOG0161|consen 1187 HADSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKD----------KKLEAQ-LSELQLKLD 1255 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHH----------HHHHHH-HHHHHHHHH
Confidence 333456666667766655444455555666666666666665544444444443 222211 112221111
Q ss_pred hhHHhhhhccCCCCCccccHHhhHHHHhhHHhhHHhHH---HHHHHHHHHHHHHHH
Q 006830 456 KTMQARASASQNSSSITISNFEYEYLRGRAVGAEELAD---KKVAAAQAWIEALKA 508 (629)
Q Consensus 456 ~~~~~~~~~~~~~~~Itis~eEye~L~~ka~eaEe~a~---kkvaaA~aqve~aka 508 (629)
...... ++-....+=+..|+..|.+...+++-.+. +....-..|++..+.
T Consensus 1256 ~~~~~~---~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~ 1308 (1930)
T KOG0161|consen 1256 EQERLR---NDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKR 1308 (1930)
T ss_pred HHHHHH---HHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 100000 01112234456788888888877775443 444555566666653
No 6
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.20 E-value=0.047 Score=68.09 Aligned_cols=195 Identities=31% Similarity=0.409 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHhhhchhhhhhhhhhhhhhHHHHHHHH
Q 006830 53 ISRYKESRKAAESVKAQAESELSTARKTVKDLACRIEKTNHQAIPSMRYVERLEKSSGIEENVLAERSRESHRYAEVMRE 132 (629)
Q Consensus 53 l~k~Keql~~aE~~K~qal~ELe~akr~ieeL~~kLe~a~~~~~~~~~ele~~r~~e~~~~~~~~~~~~e~~qya~~~~E 132 (629)
+.+|+.+..-|+..=.++..-|++-...+.+|..+|+....+...+..-...-.....-+... --.+|-.....
T Consensus 167 v~~y~~r~~ea~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~~~~~~~~------~~~~~~~~~~~ 240 (1163)
T COG1196 167 VSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELAL------LLAKLKELRKE 240 (1163)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Confidence 578999999888888888888888888888888888887755433222111110000000000 01455566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHh-HHHHH
Q 006830 133 LESVKQELSKLKLDMASVLEEKSRAEKEIEASSLKMRSNSSSVEGLRKEIEEVNEEQVLVE--LARIEALKEYG-EIEAE 209 (629)
Q Consensus 133 L~svk~EL~kl~~e~~~~~eek~~A~~~a~ea~~~a~~~~~~~~~l~kei~~~~e~~~~~e--la~i~a~~e~~-~i~a~ 209 (629)
|.....+|..++.+++........+.+++... .....++..++..++.....+. +..++...... +-...
T Consensus 241 l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-------~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~ 313 (1163)
T COG1196 241 LEELEEELSRLEEELEELQEELEEAEKEIEEL-------KSELEELREELEELQEELLELKEEIEELEGEISLLRERLEE 313 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666555554444433322 2344455555555533332222 11111111100 00011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHhh
Q 006830 210 REKEANEFSASMEVAKEKLKDLTEEIDHCKELENKLAVTLYDVNFLHNELK 260 (629)
Q Consensus 210 ~e~~~~~~~~~le~ae~el~~Lk~el~~~k~Le~kL~ets~~ie~Lq~El~ 260 (629)
...+...+...+.+...++...+.++....++..++......+.....++.
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~ 364 (1163)
T COG1196 314 LENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELE 364 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 122223344555556666666666666554555555555555555555443
No 7
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.13 E-value=0.058 Score=66.29 Aligned_cols=40 Identities=25% Similarity=0.424 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006830 53 ISRYKESRKAAESVKAQAESELSTARKTVKDLACRIEKTN 92 (629)
Q Consensus 53 l~k~Keql~~aE~~K~qal~ELe~akr~ieeL~~kLe~a~ 92 (629)
+..|+.....++.--.++.+-+....+.+..|..+++.+.
T Consensus 167 ~~~~~~~~~~t~~nL~r~~d~l~el~~ql~~L~~q~~~a~ 206 (1179)
T TIGR02168 167 ISKYKERRKETERKLERTRENLDRLEDILNELERQLKSLE 206 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667776666666666666666666666666666666665
No 8
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.06 E-value=0.077 Score=65.38 Aligned_cols=31 Identities=23% Similarity=0.337 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006830 64 ESVKAQAESELSTARKTVKDLACRIEKTNHQ 94 (629)
Q Consensus 64 E~~K~qal~ELe~akr~ieeL~~kLe~a~~~ 94 (629)
......+...|..+...+.++...+.....+
T Consensus 169 ~~~~~~~~~~l~~~~~~l~el~~~~~~L~~q 199 (1164)
T TIGR02169 169 DRKKEKALEELEEVEENIERLDLIIDEKRQQ 199 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666666655543
No 9
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.75 E-value=0.19 Score=59.86 Aligned_cols=70 Identities=13% Similarity=0.192 Sum_probs=56.5
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHh
Q 006830 38 SSSSRARELHMARRDISRYKESRKAAESVKAQAESELSTARKTVKDLACRIEKTNHQAIPSMRYVERLEK 107 (629)
Q Consensus 38 ~~~~~e~eL~~aq~el~k~Keql~~aE~~K~qal~ELe~akr~ieeL~~kLe~a~~~~~~~~~ele~~r~ 107 (629)
+...++.-|..++.+|..++-+...+...+.....+|+..+....-++.+++.+..+--...++|..++.
T Consensus 239 ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt 308 (775)
T PF10174_consen 239 KIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQT 308 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777899999999999999999999998999988888888888888888776667777777753
No 10
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.65 E-value=0.4 Score=60.75 Aligned_cols=42 Identities=5% Similarity=0.141 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006830 50 RRDISRYKESRKAAESVKAQAESELSTARKTVKDLACRIEKT 91 (629)
Q Consensus 50 q~el~k~Keql~~aE~~K~qal~ELe~akr~ieeL~~kLe~a 91 (629)
..++|.++.++...+..-..+..+|+.....+..+...++.+
T Consensus 743 ~~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~ 784 (1311)
T TIGR00606 743 EKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESA 784 (1311)
T ss_pred HhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 466777777777777777777777777777777777666555
No 11
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.54 E-value=0.51 Score=59.12 Aligned_cols=44 Identities=30% Similarity=0.425 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHH
Q 006830 211 EKEANEFSASMEVAKEKLKDLTEEIDHCKELENKLAVTLYDVNFLHN 257 (629)
Q Consensus 211 e~~~~~~~~~le~ae~el~~Lk~el~~~k~Le~kL~ets~~ie~Lq~ 257 (629)
..+...|...++.+..++..+.+++. +++.++......+..++.
T Consensus 813 ~~~~~~~~~~~~~~~~ei~~l~~~~~---~~~~~~~~l~~~~~~~~~ 856 (1163)
T COG1196 813 ERELESLEQRRERLEQEIEELEEEIE---ELEEKLDELEEELEELEK 856 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHH
Confidence 34455566666666777776666654 334444444444333333
No 12
>PRK02224 chromosome segregation protein; Provisional
Probab=97.46 E-value=0.5 Score=57.16 Aligned_cols=21 Identities=14% Similarity=-0.012 Sum_probs=9.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHh
Q 006830 239 KELENKLAVTLYDVNFLHNEL 259 (629)
Q Consensus 239 k~Le~kL~ets~~ie~Lq~El 259 (629)
.+++..|......+..|+..+
T Consensus 408 ~~~e~~l~~l~~~~~~l~~~~ 428 (880)
T PRK02224 408 GNAEDFLEELREERDELRERE 428 (880)
T ss_pred hhhHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 13
>PRK02224 chromosome segregation protein; Provisional
Probab=97.19 E-value=0.97 Score=54.70 Aligned_cols=37 Identities=16% Similarity=0.299 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006830 299 VKEELEAAKKELAAIKEEGFRFMASMDVIRNELRHVR 335 (629)
Q Consensus 299 ~~~eL~~AK~~L~~~~~E~~~l~~~vesLr~ELe~~K 335 (629)
+...|..+...++.++.+...+...+..++.-|+..+
T Consensus 410 ~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 446 (880)
T PRK02224 410 AEDFLEELREERDELREREAELEATLRTARERVEEAE 446 (880)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555554444444444
No 14
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.10 E-value=1.3 Score=54.52 Aligned_cols=43 Identities=21% Similarity=0.427 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006830 300 KEELEAAKKELAAIKEEGFRFMASMDVIRNELRHVREETARLK 342 (629)
Q Consensus 300 ~~eL~~AK~~L~~~~~E~~~l~~~vesLr~ELe~~K~el~~lk 342 (629)
..+++.....+..+...+..+...+..+..++......+..++
T Consensus 676 ~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~ 718 (1179)
T TIGR02168 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLR 718 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444443333
No 15
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.99 E-value=1.3 Score=52.68 Aligned_cols=35 Identities=23% Similarity=0.454 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHhhc
Q 006830 224 AKEKLKDLTEEIDHCKELENKLAVTLYDVNFLHNELKS 261 (629)
Q Consensus 224 ae~el~~Lk~el~~~k~Le~kL~ets~~ie~Lq~El~~ 261 (629)
+++....|.++++. +..++++.+.+++-|+.||..
T Consensus 323 AEERaesLQ~eve~---lkEr~deletdlEILKaEmee 357 (1243)
T KOG0971|consen 323 AEERAESLQQEVEA---LKERVDELETDLEILKAEMEE 357 (1243)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHh
Confidence 44445555555554 344778888999999999964
No 16
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.88 E-value=1.7 Score=52.11 Aligned_cols=65 Identities=18% Similarity=0.224 Sum_probs=43.5
Q ss_pred cccCCCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006830 30 KSHLDIP-ESSSSRARELHMARRDISRYKESRKAAESVKAQAESELSTARKTVKDLACRIEKTNHQA 95 (629)
Q Consensus 30 k~~~~~~-e~~~~~e~eL~~aq~el~k~Keql~~aE~~K~qal~ELe~akr~ieeL~~kLe~a~~~~ 95 (629)
.|-..+. ........+|..++.++...+....-+..+=.....|| ++.+.+.-|...++.++...
T Consensus 38 spElkrer~~rkee~a~l~~~k~qlr~~q~e~q~~~~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~ 103 (775)
T PF10174_consen 38 SPELKRERALRKEEAAELSRLKEQLRVTQEENQKAQEEIQALQEEL-RAQRELNRLQQELEKAQYEF 103 (775)
T ss_pred chhhHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHH-HHhhHHHHHHHHhhhccccc
Confidence 5555443 22333446777777777777777777777777777788 88877777777777777543
No 17
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.84 E-value=0.72 Score=47.41 Aligned_cols=60 Identities=22% Similarity=0.278 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHHHH
Q 006830 307 KKELAAIKEEGFRFMASMDVIRNELRHVREETARLKKGEEKTELTVQNLNSKLLRAKAKL 366 (629)
Q Consensus 307 K~~L~~~~~E~~~l~~~vesLr~ELe~~K~el~~lke~e~~a~~~v~sL~~EL~k~kseL 366 (629)
...|+.+..-+..+..-+..|..+|..+...+..+...+..++.....++..+..+...|
T Consensus 126 E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~l 185 (237)
T PF00261_consen 126 EQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKL 185 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 333333333344444444445555555555555554444444444444444444333333
No 18
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.75 E-value=1 Score=47.77 Aligned_cols=45 Identities=24% Similarity=0.407 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006830 299 VKEELEAAKKELAAIKEEGFRFMASMDVIRNELRHVREETARLKK 343 (629)
Q Consensus 299 ~~~eL~~AK~~L~~~~~E~~~l~~~vesLr~ELe~~K~el~~lke 343 (629)
+..........+..++.|+..++..+.+|+.+|...+.....|..
T Consensus 200 l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~ 244 (312)
T PF00038_consen 200 LRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLER 244 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhh
Confidence 444444555556666666666666666666666665555555544
No 19
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.49 E-value=4.3 Score=51.72 Aligned_cols=179 Identities=11% Similarity=0.119 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----hhHhHHHHHHHHHHHHHHHHHHhhchhhhhhhhhcCCCcccccccccccccccCC
Q 006830 216 EFSASMEVAKEKLKDLTEEID----HCKELENKLAVTLYDVNFLHNELKSVKDKDKLVQGNDSLKGTHSIYQSGEELEGS 291 (629)
Q Consensus 216 ~~~~~le~ae~el~~Lk~el~----~~k~Le~kL~ets~~ie~Lq~El~~ak~~e~~~~~~~s~~~~~~~~~~~~~~e~~ 291 (629)
.+...+.....+|..++.+.. ....++.++......+..++.+|.... ..+.+ +.
T Consensus 574 ~l~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~---~~i~~------------------~~ 632 (1311)
T TIGR00606 574 QLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYE---DKLFD------------------VC 632 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhc------------------CC
Confidence 345566666666666666664 335677788888888888888876421 11110 10
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHhhhhhhhh
Q 006830 292 PLLPSKSVKEELEAAKKELAAIKEEGFRFMASMDVIRNELRHV---------------------REETARLKKGEEKTEL 350 (629)
Q Consensus 292 ~~~~~~~~~~eL~~AK~~L~~~~~E~~~l~~~vesLr~ELe~~---------------------K~el~~lke~e~~a~~ 350 (629)
++......|..++..+..+..+...+.....-+..=|+.. ...+..|+........
T Consensus 633 ---~~~~~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~k~ie~a~~~~~~~C~LC~R~f~~eee~~~f~~~L~~~~~~~p~ 709 (1311)
T TIGR00606 633 ---GSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPD 709 (1311)
T ss_pred ---CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCCCCCCCCChhHHHHHHHHHHHHHhcchh
Confidence 1134555678888888888877777777666666666665 3555566655555444
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHhh-------hhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006830 351 TVQNLNSKLLRAKAKLEAVSAAEEKAN-------GIAGNLAFTLEQLKTEAEAAKKEKELVTEETAKIKEEIQKT 418 (629)
Q Consensus 351 ~v~sL~~EL~k~kseLe~~~~~Eek~~-------~~~~~l~~~Leql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ 418 (629)
....+...+...+..++.+.....-+. ..+..+...+.++..+....+.........+.+++.+.+.+
T Consensus 710 ~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~l~~~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~ 784 (1311)
T TIGR00606 710 KLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESA 784 (1311)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 566666666666666666555422111 12333444444444444444444444444444444444333
No 20
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.49 E-value=1.3 Score=45.62 Aligned_cols=55 Identities=22% Similarity=0.311 Sum_probs=48.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006830 40 SSRARELHMARRDISRYKESRKAAESVKAQAESELSTARKTVKDLACRIEKTNHQ 94 (629)
Q Consensus 40 ~~~e~eL~~aq~el~k~Keql~~aE~~K~qal~ELe~akr~ieeL~~kLe~a~~~ 94 (629)
..+..+|+.++..+..+...+..++....++..|+...++-+.-|...|+.+...
T Consensus 4 ~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eer 58 (237)
T PF00261_consen 4 QQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEER 58 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3467888999999999999999999999999999999999999998888888743
No 21
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.47 E-value=3.5 Score=50.49 Aligned_cols=109 Identities=22% Similarity=0.267 Sum_probs=60.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--------hhhhhHhhHHHHHHHHHHHHHH
Q 006830 297 KSVKEELEAAKKELAAIKEEGFRFMASMDVIRNELRHVREETARLKKGEE--------KTELTVQNLNSKLLRAKAKLEA 368 (629)
Q Consensus 297 ~~~~~eL~~AK~~L~~~~~E~~~l~~~vesLr~ELe~~K~el~~lke~e~--------~a~~~v~sL~~EL~k~kseLe~ 368 (629)
.+...-|++++...+.+......++..+..+++=|.+..+....+++--. .....|+.|..+++..-+.|..
T Consensus 1450 ~~Aq~~~~~a~as~~q~~~s~~el~~Li~~v~~Flt~~~adp~si~~vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~n 1529 (1758)
T KOG0994|consen 1450 QSAQRALEQANASRSQMEESNRELRNLIQQVRDFLTQPDADPDSIEEVAEEVLALELPLTPEQIQQLTGEIQERVASLPN 1529 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccc
Confidence 34566677888888887777777777777777766666555555543221 1223667777776666555554
Q ss_pred HHHHHHHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006830 369 VSAAEEKANGIAGNLAFTLEQLKTEAEAAKKEKELVTEETA 409 (629)
Q Consensus 369 ~~~~Eek~~~~~~~l~~~Leql~~Eae~Ak~ea~~~~~E~~ 409 (629)
+-.-=.+++.- ..-.++|-+++..|++.++..+--+.
T Consensus 1530 Vd~IL~~T~~d----i~ra~~L~s~A~~a~~~A~~v~~~ae 1566 (1758)
T KOG0994|consen 1530 VDAILSRTKGD----IARAENLQSEAERARSRAEDVKGQAE 1566 (1758)
T ss_pred HHHHHHhhhhh----HHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 43211111111 11233455566666666555554333
No 22
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.40 E-value=2.6 Score=48.32 Aligned_cols=19 Identities=26% Similarity=0.483 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 006830 72 SELSTARKTVKDLACRIEK 90 (629)
Q Consensus 72 ~ELe~akr~ieeL~~kLe~ 90 (629)
.+....+..++.|...|..
T Consensus 164 ~e~~~l~~~v~~l~~eL~~ 182 (546)
T PF07888_consen 164 EEVEQLREEVERLEAELEQ 182 (546)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433
No 23
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=96.30 E-value=0.0014 Score=78.88 Aligned_cols=43 Identities=14% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006830 43 ARELHMARRDISRYKESRKAAESVKAQAESELSTARKTVKDLA 85 (629)
Q Consensus 43 e~eL~~aq~el~k~Keql~~aE~~K~qal~ELe~akr~ieeL~ 85 (629)
..+|.-++..+..++......+..|.++..|++-++-.++...
T Consensus 327 ~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~ 369 (859)
T PF01576_consen 327 ERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQ 369 (859)
T ss_dssp -------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667778888888888888889999988888877665555543
No 24
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.12 E-value=2.3 Score=44.96 Aligned_cols=243 Identities=18% Similarity=0.252 Sum_probs=158.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-hHhhHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHH
Q 006830 307 KKELAAIKEEGFRFMASMDVIRNELRHVREETARLKKGEEKTEL-TVQNLNSKLLRAKAKLEAVSAAEEKANGIAGNLAF 385 (629)
Q Consensus 307 K~~L~~~~~E~~~l~~~vesLr~ELe~~K~el~~lke~e~~a~~-~v~sL~~EL~k~kseLe~~~~~Eek~~~~~~~l~~ 385 (629)
|.+|..+++-..++-.-|..|..+=......+..++...+...+ .-..++.+|..++..|..+...-.+..-...++..
T Consensus 3 K~eL~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~ 82 (312)
T PF00038_consen 3 KEELQSLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKE 82 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHH
Confidence 67888899999999999999999888888999999887543333 44678888888888888877666666667888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHhhHHhh-hh-
Q 006830 386 TLEQLKTEAEAAKKEKELVTEETAKIKEEIQKTEAEIYSAEEKIETSMQELNAVKSSEALAFDNLKSLIEKTMQAR-AS- 463 (629)
Q Consensus 386 ~Leql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~~~t~E~rL~aa~kE~EAakasE~lAla~ikaL~e~~~~~~-~~- 463 (629)
.+..+....+.....-..+..++..++.+++.....-...+.+++....++...+..=. .+|..|........ ..
T Consensus 83 e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~he---eEi~~L~~~~~~~~~~e~ 159 (312)
T PF00038_consen 83 ELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHE---EEIEELREQIQSSVTVEV 159 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHTTSTT---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhh---hhhhhhhhccccccceee
Confidence 99999998888888889999999999999999999999999999999999987754432 23444432211000 00
Q ss_pred ccCCCCCccccH----HhhHHHHhhH-HhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhH
Q 006830 464 ASQNSSSITISN----FEYEYLRGRA-VGAEELADKKVAAAQAWIEALKASEKEILMKMEMAHREIRHTRVEEEKEVFKS 538 (629)
Q Consensus 464 ~~~~~~~Itis~----eEye~L~~ka-~eaEe~a~kkvaaA~aqve~akasE~e~l~kLe~~~~ei~~~k~ale~Al~ra 538 (629)
+..++..++-.+ .+|+....+. .+++..-..++.....++.. .-..+..+..|+...+..+.......
T Consensus 160 ~~~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~-------~~~~~~~~~~E~~~~r~~~~~l~~el 232 (312)
T PF00038_consen 160 DQFRSSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEK-------SSEELESAKEELKELRRQIQSLQAEL 232 (312)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccc-------cccccchhHhHHHHHHhhhhHhhhhh
Confidence 111223333333 3577766655 35666666666555444332 23344455555566666555555555
Q ss_pred HHhHhhhHHHHHHHHhhhhhh
Q 006830 539 ERTRSTKRRVERELRNWRQNS 559 (629)
Q Consensus 539 E~A~~aK~avE~ELRrwr~e~ 559 (629)
+.-..-+..+|..|+-+....
T Consensus 233 ~~l~~~~~~Le~~l~~le~~~ 253 (312)
T PF00038_consen 233 ESLRAKNASLERQLRELEQRL 253 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccchhhhhhhHHHHHHHH
Confidence 555556666666665554443
No 25
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.07 E-value=5.2 Score=48.52 Aligned_cols=192 Identities=18% Similarity=0.303 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHhhchhhhhhhhhcCCCcccccccccccccccCCC
Q 006830 213 EANEFSASMEVAKEKLKDLTEEIDHCKELENKLAVTLYDVNFLHNELKSVKDKDKLVQGNDSLKGTHSIYQSGEELEGSP 292 (629)
Q Consensus 213 ~~~~~~~~le~ae~el~~Lk~el~~~k~Le~kL~ets~~ie~Lq~El~~ak~~e~~~~~~~s~~~~~~~~~~~~~~e~~~ 292 (629)
.......++..++.+|+.|...-....+|...|.-....+..+...+... +
T Consensus 685 ~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~---e-------------------------- 735 (1174)
T KOG0933|consen 685 ELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQN---E-------------------------- 735 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---h--------------------------
Confidence 33445788888999999888888899999999999999988888877531 0
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHHHHHHHHHH
Q 006830 293 LLPSKSVKEELEAAKKELAAIKEEGFRFMASMDVIRNELRHVREETARLKKGEEKTELTVQNLNSKLLRAKAKLEAVSAA 372 (629)
Q Consensus 293 ~~~~~~~~~eL~~AK~~L~~~~~E~~~l~~~vesLr~ELe~~K~el~~lke~e~~a~~~v~sL~~EL~k~kseLe~~~~~ 372 (629)
+.-+..++..-+..+++... .|......++.--++++.--..++.-.+.-......|+.+|..++..++.....
T Consensus 736 ---~~~~~~~~~~~~e~v~e~~~---~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~ 809 (1174)
T KOG0933|consen 736 ---FHKLLDDLKELLEEVEESEQ---QIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKE 809 (1174)
T ss_pred ---HhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 01222333333333332222 222333333322222222222222222222345667788888888887776554
Q ss_pred HHHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006830 373 EEKANGIAGNLAFTLEQLKTEAEAAKKEKELVTEETAKIKEEIQKTEAEIYSAEEKIETSMQELNAV 439 (629)
Q Consensus 373 Eek~~~~~~~l~~~Leql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~~~t~E~rL~aa~kE~EAa 439 (629)
=++.......|...++++..+-.-.+..-+.+......++.++...++.+..++.-...++.++.--
T Consensus 810 ~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~ 876 (1174)
T KOG0933|consen 810 LEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQ 876 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Confidence 4555555677888888888888888888888888888888888888888888777776666555443
No 26
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=96.06 E-value=0.0016 Score=78.33 Aligned_cols=98 Identities=17% Similarity=0.286 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHH
Q 006830 319 RFMASMDVIRNELRHVREETARLKKGEEKTELTVQNLNSKLLRAKAKLEAVSAAEEKANGIAGNLAFTLEQLKTEAEAAK 398 (629)
Q Consensus 319 ~l~~~vesLr~ELe~~K~el~~lke~e~~a~~~v~sL~~EL~k~kseLe~~~~~Eek~~~~~~~l~~~Leql~~Eae~Ak 398 (629)
.|..-++.+..+|++.......|..+-..-...+..+...+..+..++..+...-..+...+..|...|+.+....+...
T Consensus 353 rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~le 432 (859)
T PF01576_consen 353 RLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELE 432 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 45555666666666666666666665555556666666666666666665443333333345666677777777777777
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006830 399 KEKELVTEETAKIKEEIQ 416 (629)
Q Consensus 399 ~ea~~~~~E~~~~k~E~e 416 (629)
++...++.++..+..-..
T Consensus 433 re~k~L~~El~dl~~q~~ 450 (859)
T PF01576_consen 433 RENKQLQDELEDLTSQLD 450 (859)
T ss_dssp ------------------
T ss_pred HHHHHHHHhhccchhhhh
Confidence 766667766666654433
No 27
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.03 E-value=4 Score=46.86 Aligned_cols=170 Identities=21% Similarity=0.273 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHhhchhhhhhhhhcCCCcccccccccccccccCCCCCCchhHHHHHH
Q 006830 225 KEKLKDLTEEIDHCKELENKLAVTLYDVNFLHNELKSVKDKDKLVQGNDSLKGTHSIYQSGEELEGSPLLPSKSVKEELE 304 (629)
Q Consensus 225 e~el~~Lk~el~~~k~Le~kL~ets~~ie~Lq~El~~ak~~e~~~~~~~s~~~~~~~~~~~~~~e~~~~~~~~~~~~eL~ 304 (629)
+.++..|+.+| +.++..|.++...+..|..||..+...-.+ +|..|. . ..--. ..++..|.
T Consensus 282 ~~e~e~LkeqL---r~~qe~lqaSqq~~~~L~~EL~~~~~~RDr-----t~aeLh-----~----aRLe~--aql~~qLa 342 (546)
T PF07888_consen 282 QQENEALKEQL---RSAQEQLQASQQEAELLRKELSDAVNVRDR-----TMAELH-----Q----ARLEA--AQLKLQLA 342 (546)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH-----H----hhhhH--HHHHHHHH
Confidence 33344444443 355566777777778888888655433111 110000 0 00001 34556666
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhh-h
Q 006830 305 AAKKELAAIKE----EGFRFMASMDVIRNELRHVREETARLKKGEEKTELTVQNLNSKLLRAKAKLEAVSAAEEKANG-I 379 (629)
Q Consensus 305 ~AK~~L~~~~~----E~~~l~~~vesLr~ELe~~K~el~~lke~e~~a~~~v~sL~~EL~k~kseLe~~~~~Eek~~~-~ 379 (629)
.+...|...+. +...|..+++..+.++.+.+.++..+.+-...-...-+.|..+|.+.+ .+.. .
T Consensus 343 d~~l~lke~~~q~~qEk~~l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~-----------D~n~vq 411 (546)
T PF07888_consen 343 DASLELKEGRSQWAQEKQALQHSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEK-----------DCNRVQ 411 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----------hhhHHH
Confidence 66666554443 233555666777777777777777766655544445556666655422 1111 2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006830 380 AGNLAFTLEQLKTEAEAAKKEKELVTEETAKIKEEIQKTEAEIYS 424 (629)
Q Consensus 380 ~~~l~~~Leql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~~~t 424 (629)
+.+....|..+++-..-+.++.+.++.|...++..++.....+.+
T Consensus 412 lsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~ 456 (546)
T PF07888_consen 412 LSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDK 456 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666677666667777777777777777776666555543
No 28
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.97 E-value=6.2 Score=48.61 Aligned_cols=41 Identities=22% Similarity=0.144 Sum_probs=29.9
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006830 37 ESSSSRARELHMARRDISRYKESRKAAESVKAQAESELSTA 77 (629)
Q Consensus 37 e~~~~~e~eL~~aq~el~k~Keql~~aE~~K~qal~ELe~a 77 (629)
+.....+.+++.+-.+...+.-++..++.+|.-...--..+
T Consensus 267 ~~I~~~~~rv~~L~e~~sek~~~~k~~e~ek~~lE~~k~~a 307 (1293)
T KOG0996|consen 267 EPIEELMRRVERLNEDRSEKENRVKLVEKEKKALEGPKNEA 307 (1293)
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 45567788888888888888888888888777665544433
No 29
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.95 E-value=1.2 Score=50.91 Aligned_cols=171 Identities=15% Similarity=0.235 Sum_probs=120.1
Q ss_pred HHHHHHHHHHH----HhhHhHHHHHHHHHHHHHHHHHHhhchhhhhhhhhcCCC-cccccccccccccccCCCCCCchhH
Q 006830 225 KEKLKDLTEEI----DHCKELENKLAVTLYDVNFLHNELKSVKDKDKLVQGNDS-LKGTHSIYQSGEELEGSPLLPSKSV 299 (629)
Q Consensus 225 e~el~~Lk~el----~~~k~Le~kL~ets~~ie~Lq~El~~ak~~e~~~~~~~s-~~~~~~~~~~~~~~e~~~~~~~~~~ 299 (629)
.++|..||+.| +..+.||++=.....+|..|+.=. ++..+ .+ .-+ +. .+ ..+
T Consensus 41 K~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~----------~~~ts~ik---~~y-------e~-El--~~a 97 (546)
T KOG0977|consen 41 KKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVV----------GRETSGIK---AKY-------EA-EL--ATA 97 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----------cCCCcchh---HHh-------hh-hH--HHH
Confidence 36788888886 689999988888788877777522 11111 00 000 00 12 345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006830 300 KEELEAAKKELAAIKEEGFRFMASMDVIRNELRHVREETARLKKGEEKTELTVQNLNSKLLRAKAKLEAVSAAEEKANGI 379 (629)
Q Consensus 300 ~~eL~~AK~~L~~~~~E~~~l~~~vesLr~ELe~~K~el~~lke~e~~a~~~v~sL~~EL~k~kseLe~~~~~Eek~~~~ 379 (629)
..-|+++.....++..++..++..++.|+..+++.-......+++.......++++++++..++.....+.....+.+..
T Consensus 98 r~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~e 177 (546)
T KOG0977|consen 98 RKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAE 177 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666677777888888888888777777777788888888899999999999999999988888888888
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006830 380 AGNLAFTLEQLKTEAEAAKKEKELVTEETAKIKEEIQKT 418 (629)
Q Consensus 380 ~~~l~~~Leql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ 418 (629)
...|+..|..++...++.-----..+..+..+.+++.-.
T Consensus 178 n~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~ 216 (546)
T KOG0977|consen 178 NSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFL 216 (546)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 888888888888776665544445555555555555433
No 30
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.61 E-value=7.9 Score=47.06 Aligned_cols=37 Identities=19% Similarity=0.387 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006830 124 HRYAEVMRELESVKQELSKLKLDMASVLEEKSRAEKEIEAS 164 (629)
Q Consensus 124 ~qya~~~~EL~svk~EL~kl~~e~~~~~eek~~A~~~a~ea 164 (629)
..|-..+.++...+.++...+++... +..+.+..++.
T Consensus 734 ~e~~~~~~~~~~~~e~v~e~~~~Ike----~~~~~k~~~~~ 770 (1174)
T KOG0933|consen 734 NEFHKLLDDLKELLEEVEESEQQIKE----KERALKKCEDK 770 (1174)
T ss_pred ChHhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 45667777777777777766666543 55555555443
No 31
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=95.58 E-value=11 Score=48.70 Aligned_cols=61 Identities=15% Similarity=0.340 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhHHHHH
Q 006830 42 RARELHMARRDISRYKESRKAAESVKAQAESELSTARKTVKDLACRIEKTNHQAIPSMRYVERL 105 (629)
Q Consensus 42 ~e~eL~~aq~el~k~Keql~~aE~~K~qal~ELe~akr~ieeL~~kLe~a~~~~~~~~~ele~~ 105 (629)
.+..|..++.++.-|+.....-.. ....++...+.-+.+++..|++...+..++...+.-+
T Consensus 634 ~e~~l~qLe~~le~~~~E~~~~~~---~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L 694 (1822)
T KOG4674|consen 634 KEKRLRQLENELESYKKEKRENLK---KLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENL 694 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 345555666666666554433322 2344566666777777777777766655555544444
No 32
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.98 E-value=13 Score=45.96 Aligned_cols=62 Identities=11% Similarity=0.151 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHhHHHhHhhhHHHHHHHHhhh
Q 006830 494 KKVAAAQAWIEALKASEKEILMKMEMAHREIRHTRV-EEEKEVFKSERTRSTKRRVERELRNWR 556 (629)
Q Consensus 494 kkvaaA~aqve~akasE~e~l~kLe~~~~ei~~~k~-ale~Al~raE~A~~aK~avE~ELRrwr 556 (629)
.....+.+-+..++.+=..+...++...+.+.+.+. +++ .-.+++..+..=..++...-.|-
T Consensus 977 ~~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~~~lk~~rId-~~~K~e~~~~~l~e~~~~~~~~~ 1039 (1293)
T KOG0996|consen 977 KEYKEAEESLKEIKKELRDLKSELENIKKSENELKAERID-IENKLEAINGELNEIESKIKQPE 1039 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHHHhhhhhHH
Confidence 445556666777777777788888888888888887 666 88888888888888888877776
No 33
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=94.83 E-value=7.5 Score=46.26 Aligned_cols=163 Identities=18% Similarity=0.268 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHH
Q 006830 307 KKELAAIKEEGFRFMASMDVIRNELRHVREETARLKKGEEKTELTVQNLNSKLLRAKAKLEAVSAAEEKANGIAGNLAFT 386 (629)
Q Consensus 307 K~~L~~~~~E~~~l~~~vesLr~ELe~~K~el~~lke~e~~a~~~v~sL~~EL~k~kseLe~~~~~Eek~~~~~~~l~~~ 386 (629)
|.+|..++.+...|+.-+-.|..-..+.|..+..|..+...-.-.-..|+..|...+..-.. +|+++......-...
T Consensus 459 k~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~---ee~~aar~~~~~~~~ 535 (697)
T PF09726_consen 459 KSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKE---EEEKAARALAQAQAT 535 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHhhhhccccchhc
Confidence 34444444445566667777777788888888888887765554555555555444322111 111111110000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHhHHHhhHHhhhhcc
Q 006830 387 LEQLKTEAEAAKKEKELVTEETAKIKEEIQKTEAEIYSAEEKIETSMQE-LNAVKSSEALAFDNLKSLIEKTMQARASAS 465 (629)
Q Consensus 387 Leql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~~~t~E~rL~aa~kE-~EAakasE~lAla~ikaL~e~~~~~~~~~~ 465 (629)
. ..-++.-+.....+..|+.+++.|+-.....+..+|..++...+- .|--+..|.|- .+|.+|++...-...+.+
T Consensus 536 r---~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~-~aL~amqdk~~~LE~sLs 611 (697)
T PF09726_consen 536 R---QECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLM-SALSAMQDKNQHLENSLS 611 (697)
T ss_pred c---chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH-HHHHHHHHHHHHHHHhhh
Confidence 0 122333454557788899999999999999999999888777765 45445566554 678888877655554433
Q ss_pred CCCCCccccHHh
Q 006830 466 QNSSSITISNFE 477 (629)
Q Consensus 466 ~~~~~Itis~eE 477 (629)
..+.|.+.+|-
T Consensus 612 -aEtriKldLfs 622 (697)
T PF09726_consen 612 -AETRIKLDLFS 622 (697)
T ss_pred -HHHHHHHHHHH
Confidence 23556666553
No 34
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=94.39 E-value=17 Score=44.67 Aligned_cols=31 Identities=10% Similarity=0.181 Sum_probs=16.0
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHhh
Q 006830 230 DLTEEIDHCKELENKLAVTLYDVNFLHNELK 260 (629)
Q Consensus 230 ~Lk~el~~~k~Le~kL~ets~~ie~Lq~El~ 260 (629)
+|++..+..+..+.++++....|+..+..+.
T Consensus 282 ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~ 312 (1074)
T KOG0250|consen 282 QLNNQEEEIKKKQEKVDTLQEKIEEKQGKIE 312 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555554443
No 35
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=94.21 E-value=6.4 Score=40.80 Aligned_cols=67 Identities=25% Similarity=0.325 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 006830 385 FTLEQLKTEAEAAKKEKELVTEETAKIKEEIQKTEAEIYSAEEKIETSMQELNAVKSSEALAFDNLK 451 (629)
Q Consensus 385 ~~Leql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~~~t~E~rL~aa~kE~EAakasE~lAla~ik 451 (629)
..+..|..|...++.....+..++..+..+.+.....+.....++..-.+.+-+++.+=..+++.|.
T Consensus 89 ~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~ 155 (239)
T COG1579 89 RELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIR 155 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666667777777777777777777777777777777777777666666555444444443
No 36
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.16 E-value=18 Score=44.02 Aligned_cols=72 Identities=19% Similarity=0.272 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 006830 124 HRYAEVMRELESVKQELSKLKLDMASVLEEKSRAEKEIEASSLKMRSNSSSVEGLRKEIEEVNEEQVLVELA 195 (629)
Q Consensus 124 ~qya~~~~EL~svk~EL~kl~~e~~~~~eek~~A~~~a~ea~~~a~~~~~~~~~l~kei~~~~e~~~~~ela 195 (629)
-+|+---.||.-+..+|.+|..++..+.+.-..-......+...+.-....+.+|...+..+++...++...
T Consensus 223 lEYtiYdrEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~ 294 (1200)
T KOG0964|consen 223 LEYTIYDRELNEINGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKAR 294 (1200)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 679999999999999999999999998887543333333333333333345555666666665544444443
No 37
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=93.86 E-value=12 Score=41.02 Aligned_cols=193 Identities=16% Similarity=0.212 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHhhhchhhhhhhhhhhh
Q 006830 43 ARELHMARRDISRYKESRKAAESVKAQAESELSTARKTVKDLACRIEKTNHQAIPSMRYVERLEKSSGIEENVLAERSRE 122 (629)
Q Consensus 43 e~eL~~aq~el~k~Keql~~aE~~K~qal~ELe~akr~ieeL~~kLe~a~~~~~~~~~ele~~r~~e~~~~~~~~~~~~e 122 (629)
.-||+.++.+|.-.+.++..++.+|..+..|-+.++-. |+.+..+++....++..+
T Consensus 73 Vfqlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~E-------l~~~r~e~~~v~~~~~~a----------------- 128 (499)
T COG4372 73 VFQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSE-------LQKARQEREAVRQELAAA----------------- 128 (499)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH-----------------
Confidence 45777888888888888887777777777765544322 222222222222222222
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH-----HHHHH-
Q 006830 123 SHRYAEVMRELESVKQELSKLKLDMASVLEEKSRAEKEIEASSLKMRSNSSSVEGLRKEIEEVNEEQVL-----VELAR- 196 (629)
Q Consensus 123 ~~qya~~~~EL~svk~EL~kl~~e~~~~~eek~~A~~~a~ea~~~a~~~~~~~~~l~kei~~~~e~~~~-----~ela~- 196 (629)
+..|+.+..+|-.+..--..++..+..+.+.+-.+..+++......+.---.+..|+-++-.+....-. -+++.
T Consensus 129 ~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~~la~r 208 (499)
T COG4372 129 RQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATR 208 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 244666666666666666666666666666664444433321111111111233344333333221111 11111
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhHhHHHHHHHHHHHHHHHHHHh
Q 006830 197 IEALKEYGEIEAEREKEANEFSASMEVAKEKLKDLTEEID----HCKELENKLAVTLYDVNFLHNEL 259 (629)
Q Consensus 197 i~a~~e~~~i~a~~e~~~~~~~~~le~ae~el~~Lk~el~----~~k~Le~kL~ets~~ie~Lq~El 259 (629)
-++.+...+-++-+.+..+.......+.+..|..+++++. -+..=|.+|.........|+-|.
T Consensus 209 ~~a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqev 275 (499)
T COG4372 209 ANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEV 275 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222221222233333334444555556666666666663 33444555555444444444443
No 38
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=93.29 E-value=6.5 Score=37.51 Aligned_cols=28 Identities=32% Similarity=0.552 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006830 128 EVMRELESVKQELSKLKLDMASVLEEKS 155 (629)
Q Consensus 128 ~~~~EL~svk~EL~kl~~e~~~~~eek~ 155 (629)
..-.+|..+..+|..++.|++++..+|.
T Consensus 56 ~L~~el~~lt~el~~L~~EL~~l~sEk~ 83 (140)
T PF10473_consen 56 TLEEELEELTSELNQLELELDTLRSEKE 83 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677888888888888888888886
No 39
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.06 E-value=20 Score=41.08 Aligned_cols=69 Identities=23% Similarity=0.321 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcc-hhhHHHHHHhhhchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006830 70 AESELSTARKTVKDLACRIEKTNHQAIP-SMRYVERLEKSSGIEENVLAERSRESHRYAEVMRELESVKQELSKLKLDMA 148 (629)
Q Consensus 70 al~ELe~akr~ieeL~~kLe~a~~~~~~-~~~ele~~r~~e~~~~~~~~~~~~e~~qya~~~~EL~svk~EL~kl~~e~~ 148 (629)
|.++++..+--|+-|+..|+.+..+..+ +.--|+.++... .-..||...-++++.++.||.++++-|.
T Consensus 6 aeq~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~-----------~Lkqq~eEleaeyd~~R~Eldqtkeal~ 74 (772)
T KOG0999|consen 6 AEQEVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKE-----------DLKQQLEELEAEYDLARTELDQTKEALG 74 (772)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888889888888755333 222333332110 0147888889999999999999888765
Q ss_pred H
Q 006830 149 S 149 (629)
Q Consensus 149 ~ 149 (629)
-
T Consensus 75 q 75 (772)
T KOG0999|consen 75 Q 75 (772)
T ss_pred H
Confidence 4
No 40
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.00 E-value=21 Score=41.01 Aligned_cols=160 Identities=26% Similarity=0.325 Sum_probs=86.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHH
Q 006830 173 SSVEGLRKEIEEVNEEQVLVELARIEALKEYGEIEAEREKEANEFSASMEVAKEKLKDLTEEIDHCKELENKLAVTLYDV 252 (629)
Q Consensus 173 ~~~~~l~kei~~~~e~~~~~ela~i~a~~e~~~i~a~~e~~~~~~~~~le~ae~el~~Lk~el~~~k~Le~kL~ets~~i 252 (629)
..++.|+-+|+.+.....++.-..|+|..-=+.+..++..- +++| .+|+..++-+-.+|
T Consensus 8 q~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~L------------------kqq~---eEleaeyd~~R~El 66 (772)
T KOG0999|consen 8 QEVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDL------------------KQQL---EELEAEYDLARTEL 66 (772)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHH---HHHHHHHHHHHHHH
Confidence 45667778888888777777777777776544444444322 1111 14555555556666
Q ss_pred HHHHHHhhchhhhhhhhhcCCCcccccccccccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006830 253 NFLHNELKSVKDKDKLVQGNDSLKGTHSIYQSGEELEGSPLLPSKSVKEELEAAKKELAAIKEEGFRFMASMDVIRNELR 332 (629)
Q Consensus 253 e~Lq~El~~ak~~e~~~~~~~s~~~~~~~~~~~~~~e~~~~~~~~~~~~eL~~AK~~L~~~~~E~~~l~~~vesLr~ELe 332 (629)
+.++.-|..++..-..+ ...|.+-+ .++..+ ..||. +....-++.|.+-..-++.+|.
T Consensus 67 dqtkeal~q~~s~hkk~------------~~~g~e~E-------esLLqE-SaakE--~~yl~kI~eleneLKq~r~el~ 124 (772)
T KOG0999|consen 67 DQTKEALGQYRSQHKKV------------ARDGEERE-------ESLLQE-SAAKE--EYYLQKILELENELKQLRQELT 124 (772)
T ss_pred HHHHHHHHHHHHHHHHh------------hccchhhH-------HHHHHH-HHHhH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 66665554443333222 11111111 111111 11221 1222346667777777778888
Q ss_pred HHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHH
Q 006830 333 HVREETARLKKGEEKTELTVQNLNSKLLRAKAKLEAVSAAEEK 375 (629)
Q Consensus 333 ~~K~el~~lke~e~~a~~~v~sL~~EL~k~kseLe~~~~~Eek 375 (629)
+++.+..++...-..---.-+.++.+-.+++++|...+-.|.|
T Consensus 125 ~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~R 167 (772)
T KOG0999|consen 125 NVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREAR 167 (772)
T ss_pred HHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 8888877776544433334455666667777777766555543
No 41
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=92.98 E-value=27 Score=42.30 Aligned_cols=136 Identities=15% Similarity=0.218 Sum_probs=77.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhhhHhhHHHHHHHHHHHHHHHHHHHHH
Q 006830 297 KSVKEELEAAKKELAAIKEEGFRFMASMDVIRNELRHVREETARLKKGEE-KTELTVQNLNSKLLRAKAKLEAVSAAEEK 375 (629)
Q Consensus 297 ~~~~~eL~~AK~~L~~~~~E~~~l~~~vesLr~ELe~~K~el~~lke~e~-~a~~~v~sL~~EL~k~kseLe~~~~~Eek 375 (629)
..++.+=+.|...-+.+..|+..+..-+++|..+|+-.|.+.+.=--.-. .++....+|+..-.++|--|--+++
T Consensus 314 EmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRD---- 389 (1243)
T KOG0971|consen 314 EMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRD---- 389 (1243)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHh----
Confidence 44566666666777777777777777777777777777776654311110 0011112333322222222221111
Q ss_pred hhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 006830 376 ANGIAGNLAFTLEQLKTEAEAAKKEKELVTEETAKIKEEIQKTEAEIYSAEEKIETSMQELNAVKSSEALA 446 (629)
Q Consensus 376 ~~~~~~~l~~~Leql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~~~t~E~rL~aa~kE~EAakasE~lA 446 (629)
....-...-+.+..| .+..+.|+..++.-.|.....++.+|+.+-..+..++||--+|++.
T Consensus 390 ---lsA~ek~d~qK~~ke-------lE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV 450 (1243)
T KOG0971|consen 390 ---LSASEKQDHQKLQKE-------LEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMV 450 (1243)
T ss_pred ---cchHHHHHHHHHHHH-------HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHH
Confidence 111112223333333 3344456666777777778888888888888888899998888766
No 42
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=92.93 E-value=8.1 Score=36.16 Aligned_cols=82 Identities=22% Similarity=0.351 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHhhhchhhhhhhhhhhhh
Q 006830 44 RELHMARRDISRYKESRKAAESVKAQAESELSTARKTVKDLACRIEKTNHQAIPSMRYVERLEKSSGIEENVLAERSRES 123 (629)
Q Consensus 44 ~eL~~aq~el~k~Keql~~aE~~K~qal~ELe~akr~ieeL~~kLe~a~~~~~~~~~ele~~r~~e~~~~~~~~~~~~e~ 123 (629)
.++..++.++..++.+...++..-..+..+|..-...+.+...+.+.-.
T Consensus 3 ~e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El------------------------------- 51 (132)
T PF07926_consen 3 SELSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYEREL------------------------------- 51 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------
Confidence 4566667777777777776666666666666666655555544443332
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006830 124 HRYAEVMRELESVKQELSKLKLDMASVLEEKSR 156 (629)
Q Consensus 124 ~qya~~~~EL~svk~EL~kl~~e~~~~~eek~~ 156 (629)
..|+.++..|..++.++..++.++..+-.+...
T Consensus 52 ~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~ 84 (132)
T PF07926_consen 52 VKHAEDIKELQQLREELQELQQEINELKAEAES 84 (132)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999999988877666653
No 43
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=92.78 E-value=32 Score=42.70 Aligned_cols=203 Identities=20% Similarity=0.215 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH----HHHHHHHHHHHHH--HHHHHHHHHHH
Q 006830 128 EVMRELESVKQELSKLKLDMASVLEEKSRAEKEIEASSLKMRSNSSSVEG----LRKEIEEVNEEQV--LVELARIEALK 201 (629)
Q Consensus 128 ~~~~EL~svk~EL~kl~~e~~~~~eek~~A~~~a~ea~~~a~~~~~~~~~----l~kei~~~~e~~~--~~ela~i~a~~ 201 (629)
.+-++|.+.+.|...+..-+..+...-..|.+.|+.+-..+..-...++. |.+-|..++.=+- .+-...|+.+-
T Consensus 1419 ~~~~~l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~~~~a~as~~q~~~s~~el~~Li~~v~~Flt~~~adp~si~~vA 1498 (1758)
T KOG0994|consen 1419 DADTQLRSKLAEAEQTLSMVREAKLSASEAQQSAQRALEQANASRSQMEESNRELRNLIQQVRDFLTQPDADPDSIEEVA 1498 (1758)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 45567788888777776655555544455555554444433322222221 2222222211100 01122222211
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhHhHHHHHHHHHHHH---HHHHHHhhchhhhhhhhhcCCC
Q 006830 202 EYGEIEAEREKEANEFSASMEVAKEKLKDLTEEI----DHCKELENKLAVTLYDV---NFLHNELKSVKDKDKLVQGNDS 274 (629)
Q Consensus 202 e~~~i~a~~e~~~~~~~~~le~ae~el~~Lk~el----~~~k~Le~kL~ets~~i---e~Lq~El~~ak~~e~~~~~~~s 274 (629)
+ + -...+|--.-++|+.|-.+| .+..+++.=|..|-.+| +.|+.+...++...-.+++
T Consensus 1499 ~-------~-----vL~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~--- 1563 (1758)
T KOG0994|consen 1499 E-------E-----VLALELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERARSRAEDVKG--- 1563 (1758)
T ss_pred H-------H-----HHhccCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHH---
Confidence 1 0 01112222334455554444 46777777777776655 4555555444333212111
Q ss_pred cccccccccccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhh
Q 006830 275 LKGTHSIYQSGEELEGSPLLPSKSVKEELEAAKKELAAIKEEGFRFMASMDVIRNELRHVREETARLKKGEEKTELTVQN 354 (629)
Q Consensus 275 ~~~~~~~~~~~~~~e~~~~~~~~~~~~eL~~AK~~L~~~~~E~~~l~~~vesLr~ELe~~K~el~~lke~e~~a~~~v~s 354 (629)
.. ..|...|++|......+++-+...-....-...-|.++..+.+........+.-.+..
T Consensus 1564 ------------------~a--e~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~e 1623 (1758)
T KOG0994|consen 1564 ------------------QA--EDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGE 1623 (1758)
T ss_pred ------------------HH--HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 4566777777777777776666666666666666777777777776666666656666
Q ss_pred HHHHHHHHHHH
Q 006830 355 LNSKLLRAKAK 365 (629)
Q Consensus 355 L~~EL~k~kse 365 (629)
|...+..++.+
T Consensus 1624 L~~~~e~lk~~ 1634 (1758)
T KOG0994|consen 1624 LETRMEELKHK 1634 (1758)
T ss_pred HHHHHHHHHHH
Confidence 66555544433
No 44
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=92.59 E-value=0.47 Score=56.44 Aligned_cols=47 Identities=26% Similarity=0.345 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHhhchhhhh
Q 006830 220 SMEVAKEKLKDLTEEIDHCKELENKLAVTLYDVNFLHNELKSVKDKD 266 (629)
Q Consensus 220 ~le~ae~el~~Lk~el~~~k~Le~kL~ets~~ie~Lq~El~~ak~~e 266 (629)
..+-.+++...|...+.....++.+|...-..+..|..++..+..+.
T Consensus 282 n~elLeEe~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el~sW~sl~ 328 (722)
T PF05557_consen 282 NVELLEEEKRSLQRKLERLEELEEELAELQLENEKLEDELNSWESLL 328 (722)
T ss_dssp -----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34446677888888888999999999999999999999998765443
No 45
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=92.50 E-value=25 Score=40.66 Aligned_cols=127 Identities=17% Similarity=0.210 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHhhhchhhhhhhhhhhhhhHHHHHHH
Q 006830 52 DISRYKESRKAAESVKAQAESELSTARKTVKDLACRIEKTNHQAIPSMRYVERLEKSSGIEENVLAERSRESHRYAEVMR 131 (629)
Q Consensus 52 el~k~Keql~~aE~~K~qal~ELe~akr~ieeL~~kLe~a~~~~~~~~~ele~~r~~e~~~~~~~~~~~~e~~qya~~~~ 131 (629)
+|..+..-+..+...++++..++...+-.+++|..+++++.........++-.... .-+...+....-+.++...-.
T Consensus 93 El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~---~l~~leAe~~~~krr~~~le~ 169 (546)
T KOG0977|consen 93 ELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLS---RLSELEAEINTLKRRIKALED 169 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhh---hhhhhhhHHHHHHHHHHHHHH
Confidence 34455555666666777777888888888888888887776443333322221110 001111100111355556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 006830 132 ELESVKQELSKLKLDMASVLEEKSRAEKEIEASSLKMRSNSSSVEGLRKEIEEVNEE 188 (629)
Q Consensus 132 EL~svk~EL~kl~~e~~~~~eek~~A~~~a~ea~~~a~~~~~~~~~l~kei~~~~e~ 188 (629)
|+.-++.|..+|..++..+....+ +.+.-=..+...+..|..+|.-+...
T Consensus 170 e~~~Lk~en~rl~~~l~~~r~~ld-------~Etllr~d~~n~~q~Lleel~f~~~~ 219 (546)
T KOG0977|consen 170 ELKRLKAENSRLREELARARKQLD-------DETLLRVDLQNRVQTLLEELAFLKRI 219 (546)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHH-------HHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 666666666666666665554443 22221122235566676666665533
No 46
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=92.25 E-value=31 Score=41.26 Aligned_cols=150 Identities=20% Similarity=0.273 Sum_probs=78.9
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHHhhhhHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006830 350 LTVQNLNSKLLRAKAKLEAVSAAEEKANGIAGNL---AFTLEQLKTEAEAAKKEKELVTEETAKIKEEIQKTEAEIYSAE 426 (629)
Q Consensus 350 ~~v~sL~~EL~k~kseLe~~~~~Eek~~~~~~~l---~~~Leql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~~~t~E 426 (629)
..|.++...+.-..-+++.+.....+.+.-|+.+ .--+++.+..-+.+ +.|+.++-+-+...+..+..++
T Consensus 365 ~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e~~~~dhe~~-------kneL~~a~ekld~mgthl~mad 437 (1265)
T KOG0976|consen 365 MDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLEQGKKDHEAA-------KNELQEALEKLDLMGTHLSMAD 437 (1265)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccchhHHH-------HHHHHHHHHHHHHHhHHHHHHH
Confidence 3444444444444444444433332233322222 22344555554444 4677777777788888888888
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhHHHhhHHhhhhcc-CCCCCccccHHhhHHHHhhHHhhHHhHHHHHHHHHHHHHH
Q 006830 427 EKIETSMQELNAVKSSEALAFDNLKSLIEKTMQARASAS-QNSSSITISNFEYEYLRGRAVGAEELADKKVAAAQAWIEA 505 (629)
Q Consensus 427 ~rL~aa~kE~EAakasE~lAla~ikaL~e~~~~~~~~~~-~~~~~Itis~eEye~L~~ka~eaEe~a~kkvaaA~aqve~ 505 (629)
..|.-.+--.+-++-+-+.|+.+-+.+...--..- ++ .+..+|. -|| +.
T Consensus 438 ~Q~s~fk~Lke~aegsrrraIeQcnemv~rir~l~--~sle~qrKVe---qe~-------------------------em 487 (1265)
T KOG0976|consen 438 YQLSNFKVLKEHAEGSRRRAIEQCNEMVDRIRALM--DSLEKQRKVE---QEY-------------------------EM 487 (1265)
T ss_pred HHHhhHHHHHHhhhhhHhhHHHHHHHHHHHHHHHh--hChhhhcchH---HHH-------------------------HH
Confidence 88765555555566666666666555544321110 11 0112222 234 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 006830 506 LKASEKEILMKMEMAHREIRHTRVEEEKEVF 536 (629)
Q Consensus 506 akasE~e~l~kLe~~~~ei~~~k~ale~Al~ 536 (629)
.|+.-.+--+|.+...++|-+....+-.++.
T Consensus 488 lKaen~rqakkiefmkEeiQethldyR~els 518 (1265)
T KOG0976|consen 488 LKAENERQAKKIEFMKEEIQETHLDYRSELS 518 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444456777888888877776666655
No 47
>PRK11637 AmiB activator; Provisional
Probab=91.78 E-value=25 Score=39.20 Aligned_cols=21 Identities=14% Similarity=0.284 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 006830 130 MRELESVKQELSKLKLDMASV 150 (629)
Q Consensus 130 ~~EL~svk~EL~kl~~e~~~~ 150 (629)
-.+|+.+++++..+.+++..+
T Consensus 46 ~~~l~~l~~qi~~~~~~i~~~ 66 (428)
T PRK11637 46 RDQLKSIQQDIAAKEKSVRQQ 66 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555544443
No 48
>PHA02562 46 endonuclease subunit; Provisional
Probab=90.30 E-value=38 Score=38.68 Aligned_cols=46 Identities=17% Similarity=0.250 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----hhHhHHHHHHHHHHHHHHHHHHhhc
Q 006830 216 EFSASMEVAKEKLKDLTEEID----HCKELENKLAVTLYDVNFLHNELKS 261 (629)
Q Consensus 216 ~~~~~le~ae~el~~Lk~el~----~~k~Le~kL~ets~~ie~Lq~El~~ 261 (629)
.+...+...+.+|..|+.++. ..+.++..+......+..++..+..
T Consensus 231 ~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~ 280 (562)
T PHA02562 231 TIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKM 280 (562)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666677776666543 3445555666666666666655543
No 49
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=89.97 E-value=45 Score=38.93 Aligned_cols=122 Identities=21% Similarity=0.298 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH--HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006830 124 HRYAEVMRELESVKQELSKLKLDMASVLEEKSRAE--KEIE--ASSLKMRSNSSSVEGLRKEIEEVNEEQVLVELARIEA 199 (629)
Q Consensus 124 ~qya~~~~EL~svk~EL~kl~~e~~~~~eek~~A~--~~a~--ea~~~a~~~~~~~~~l~kei~~~~e~~~~~ela~i~a 199 (629)
..|..+|.+|.-+.+=+.-+..+...+...=..+- ++.+ +-+.. +......+..+|..++..+.+.+-..-
T Consensus 235 aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~---~~~~L~~kd~~i~~L~~di~~~~~S~~-- 309 (629)
T KOG0963|consen 235 AEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDA---LGSVLNQKDSEIAQLSNDIERLEASLV-- 309 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHH---HHHHHhHHHHHHHHHHHHHHHHHHHHH--
Confidence 67778888887777666555555544332221100 0000 00000 112222344445444433333332221
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHhhchhhhh
Q 006830 200 LKEYGEIEAEREKEANEFSASMEVAKEKLKDLTEEIDHCKELENKLAVTLYDVNFLHNELKSVKDKD 266 (629)
Q Consensus 200 ~~e~~~i~a~~e~~~~~~~~~le~ae~el~~Lk~el~~~k~Le~kL~ets~~ie~Lq~El~~ak~~e 266 (629)
.....|...+...+.++...+..++ .|+.+|..- ++.+.++.||..-|.||
T Consensus 310 ------------~e~e~~~~qI~~le~~l~~~~~~le---el~~kL~~~-sDYeeIK~ELsiLk~ie 360 (629)
T KOG0963|consen 310 ------------EEREKHKAQISALEKELKAKISELE---ELKEKLNSR-SDYEEIKKELSILKAIE 360 (629)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhh-ccHHHHHHHHHHHHHhh
Confidence 1223344444444444444444333 344344333 67778899998888886
No 50
>PRK01156 chromosome segregation protein; Provisional
Probab=89.96 E-value=55 Score=39.98 Aligned_cols=343 Identities=12% Similarity=0.132 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHhhhchhhhhhhhhh
Q 006830 41 SRARELHMARRDISRYKESRKAAESVKAQAESELSTARKTVKDLACRIEKTNHQAIPSMRYVERLEKSSGIEENVLAERS 120 (629)
Q Consensus 41 ~~e~eL~~aq~el~k~Keql~~aE~~K~qal~ELe~akr~ieeL~~kLe~a~~~~~~~~~ele~~r~~e~~~~~~~~~~~ 120 (629)
.....|..+...+..++.++...+..... +.++..-....+++..+++.....
T Consensus 302 ~~~~~l~~l~~~l~~l~~~l~~~e~~~~~-~e~~~~~~~e~~~~~~~~~~l~~~-------------------------- 354 (895)
T PRK01156 302 KYKNDIENKKQILSNIDAEINKYHAIIKK-LSVLQKDYNDYIKKKSRYDDLNNQ-------------------------- 354 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH--------------------------
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHhhhhhHHHHHHHHHHHHHHH
Q 006830 121 RESHRYAEVMRELESVKQELSKLKLDMASVLEEKSRAEKEIEA-----------SSLKMRSNSSSVEGLRKEIEEVNEEQ 189 (629)
Q Consensus 121 ~e~~qya~~~~EL~svk~EL~kl~~e~~~~~eek~~A~~~a~e-----------a~~~a~~~~~~~~~l~kei~~~~e~~ 189 (629)
...|.....++...+.+|..+.......-.........+.. ...........+++|.++|..++..+
T Consensus 355 --~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~i~~l~~~i 432 (895)
T PRK01156 355 --ILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRI 432 (895)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred --HHHHHHHHHHHHH-------------------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHH
Q 006830 190 --VLVELARIEALKE-------------------YGEIEAEREKEANEFSASMEVAKEKLKDLTEEIDHCKELENKLAVT 248 (629)
Q Consensus 190 --~~~ela~i~a~~e-------------------~~~i~a~~e~~~~~~~~~le~ae~el~~Lk~el~~~k~Le~kL~et 248 (629)
+...+..+..... ..++...-..........++....++..|+.++.....+..+|..
T Consensus 433 ~~l~~~~~el~~~~~~l~~~~~Cp~c~~~~~~e~~~e~i~~~~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~~~l~~- 511 (895)
T PRK01156 433 RALRENLDELSRNMEMLNGQSVCPVCGTTLGEEKSNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLES- 511 (895)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-
Q ss_pred HHHHHHHHHHhhchhhhhhhhhcCCCcccccccccccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006830 249 LYDVNFLHNELKSVKDKDKLVQGNDSLKGTHSIYQSGEELEGSPLLPSKSVKEELEAAKKELAAIKEEGFRFMASMDVIR 328 (629)
Q Consensus 249 s~~ie~Lq~El~~ak~~e~~~~~~~s~~~~~~~~~~~~~~e~~~~~~~~~~~~eL~~AK~~L~~~~~E~~~l~~~vesLr 328 (629)
..+..|..........+....+. ..-..+|+.--..+..+..+...+. +..|.
T Consensus 512 -~~~~~l~~~~~~~~~l~~~l~~~------------------------~~~l~~le~~~~~~~~l~~~~~~~~--l~~l~ 564 (895)
T PRK01156 512 -EEINKSINEYNKIESARADLEDI------------------------KIKINELKDKHDKYEEIKNRYKSLK--LEDLD 564 (895)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHhh--HHHHH
Q ss_pred HHHHHHHH---------------HHHHHHhhhhhhhhhHhhHHH--------------HHHHHHHHHHHHHHHHHHhhhh
Q 006830 329 NELRHVRE---------------ETARLKKGEEKTELTVQNLNS--------------KLLRAKAKLEAVSAAEEKANGI 379 (629)
Q Consensus 329 ~ELe~~K~---------------el~~lke~e~~a~~~v~sL~~--------------EL~k~kseLe~~~~~Eek~~~~ 379 (629)
.++..... .+..+..........+..|+. +|.....+++.....=...+..
T Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~l~~l~~~l~~le~~~~~~~~~~~~~~~~le~~~~~le~~~~~l~~~~~~ 644 (895)
T PRK01156 565 SKRTSWLNALAVISLIDIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKIL 644 (895)
T ss_pred HHHHHHHHHHhHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006830 380 AGNLAFTLEQLKTEA-----------------EAAKKEKELVTEETAKIKEEIQKTEAEIYSAEEKIETSMQELNAVK 440 (629)
Q Consensus 380 ~~~l~~~Leql~~Ea-----------------e~Ak~ea~~~~~E~~~~k~E~e~~ka~~~t~E~rL~aa~kE~EAak 440 (629)
+..+...+..+.... .........+..++..+..++......+......+.....+++..+
T Consensus 645 i~~~~~~i~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~~~ 722 (895)
T PRK01156 645 IEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDIN 722 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
No 51
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=89.91 E-value=59 Score=40.28 Aligned_cols=254 Identities=19% Similarity=0.249 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHhhhchhhhhhhhhhhh
Q 006830 43 ARELHMARRDISRYKESRKAAESVKAQAESELSTARKTVKDLACRIEKTNHQAIPSMRYVERLEKSSGIEENVLAERSRE 122 (629)
Q Consensus 43 e~eL~~aq~el~k~Keql~~aE~~K~qal~ELe~akr~ieeL~~kLe~a~~~~~~~~~ele~~r~~e~~~~~~~~~~~~e 122 (629)
-++|..+.+.+..+-.-+..+-..=.+...+|..-++-+.++..+|.....- +++... .++--+.-++
T Consensus 206 aT~L~qi~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~-----e~~~~~----l~~Lk~k~~W--- 273 (1074)
T KOG0250|consen 206 ATQLEQITESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQL-----EDLKEN----LEQLKAKMAW--- 273 (1074)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH-----HHHHHH----HHHHHHHHHH---
Confidence 4889999988888888888777777777778888888888877777654411 111100 0000001011
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006830 123 SHRYAEVMRELESVKQELSKLKLDMASVLEEKSRAEKEIEASSLKMRSNSSSVEGLRKEIEEVNEEQVLVELARIEALKE 202 (629)
Q Consensus 123 ~~qya~~~~EL~svk~EL~kl~~e~~~~~eek~~A~~~a~ea~~~a~~~~~~~~~l~kei~~~~e~~~~~ela~i~a~~e 202 (629)
.....+..+|...-.+..+.+...+.+-+.=......+.++..........+..++.+++...++|..+...- ..
T Consensus 274 -~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~----~~ 348 (1074)
T KOG0250|consen 274 -AWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDL----DD 348 (1074)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHH----HH
Confidence 2233444455555555555555444433333334444444444444333444445444444443332221111 00
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhHhHHHHHHHHHHHHHHHHHHhhchhhhhhhhhcCCCccc
Q 006830 203 YGEIEAEREKEANEFSASMEVAKEKLKDLTEEID-----HCKELENKLAVTLYDVNFLHNELKSVKDKDKLVQGNDSLKG 277 (629)
Q Consensus 203 ~~~i~a~~e~~~~~~~~~le~ae~el~~Lk~el~-----~~k~Le~kL~ets~~ie~Lq~El~~ak~~e~~~~~~~s~~~ 277 (629)
......+-+.........+.+....+..|++.|. ..+++..++.+....+..|+.|.+..-.
T Consensus 349 ~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~------------- 415 (1074)
T KOG0250|consen 349 LRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEE------------- 415 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH-------------
Confidence 0011111111222233444444444444444442 2577888888888888888888764211
Q ss_pred ccccccccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006830 278 THSIYQSGEELEGSPLLPSKSVKEELEAAKKELAAIKEEGFRFMASMDVIRNELRHVREETARLKK 343 (629)
Q Consensus 278 ~~~~~~~~~~~e~~~~~~~~~~~~eL~~AK~~L~~~~~E~~~l~~~vesLr~ELe~~K~el~~lke 343 (629)
.+ ..+..+++..+..+-....+...+..-...|+..++.-...+..|+.
T Consensus 416 ---------------~~--~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~ 464 (1074)
T KOG0250|consen 416 ---------------QI--NSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKK 464 (1074)
T ss_pred ---------------HH--HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 12 45666666666666666666666666777777777777766666653
No 52
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=88.88 E-value=32 Score=35.76 Aligned_cols=47 Identities=19% Similarity=0.309 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006830 383 LAFTLEQLKTEAEAAKKEKELVTEETAKIKEEIQKTEAEIYSAEEKI 429 (629)
Q Consensus 383 l~~~Leql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~~~t~E~rL 429 (629)
|...++.+.........+...+..+..++..++...+-.+...+..+
T Consensus 94 L~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~ 140 (239)
T COG1579 94 LNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNL 140 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444443333333333333
No 53
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=87.72 E-value=27 Score=38.45 Aligned_cols=63 Identities=16% Similarity=0.222 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHHHHHHHHH
Q 006830 309 ELAAIKEEGFRFMASMDVIRNELRHVREETARLKKGEEKTELTVQNLNSKLLRAKAKLEAVSA 371 (629)
Q Consensus 309 ~L~~~~~E~~~l~~~vesLr~ELe~~K~el~~lke~e~~a~~~v~sL~~EL~k~kseLe~~~~ 371 (629)
.|+++..-...|..-++.|..+....+..+..++++-+.++..|..+..+|+....+|+.++.
T Consensus 253 ~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~ 315 (359)
T PF10498_consen 253 TLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQ 315 (359)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555566666777777777777777777777777777777777777777777776654
No 54
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=87.22 E-value=71 Score=37.83 Aligned_cols=105 Identities=17% Similarity=0.178 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHHHHH--------HHHHHHHHhhhhHhhHHHHHHH
Q 006830 318 FRFMASMDVIRNELRHVREETARLKKGEEKTELTVQNLNSKLLRAKAKLE--------AVSAAEEKANGIAGNLAFTLEQ 389 (629)
Q Consensus 318 ~~l~~~vesLr~ELe~~K~el~~lke~e~~a~~~v~sL~~EL~k~kseLe--------~~~~~Eek~~~~~~~l~~~Leq 389 (629)
..++..+.-+..++..++.....++-......+..-.+.+-++.++.+|. .++..+..+--.+.+|..+|+.
T Consensus 519 k~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~ 598 (961)
T KOG4673|consen 519 KLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSK 598 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666666665555444444444444444555555442 1111221111123444444432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006830 390 LKTEAEAAKKEKELVTEETAKIKEEIQKTEAEIYSAEEKIETS 432 (629)
Q Consensus 390 l~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~~~t~E~rL~aa 432 (629)
.|--.|+++ ..++.|++...-.+..+|.|++..
T Consensus 599 --~Eq~aarrE--------d~~R~Ei~~LqrRlqaaE~R~eel 631 (961)
T KOG4673|consen 599 --KEQQAARRE--------DMFRGEIEDLQRRLQAAERRCEEL 631 (961)
T ss_pred --HHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222233433 345566666666777777777643
No 55
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=86.71 E-value=1.2e+02 Score=39.96 Aligned_cols=24 Identities=13% Similarity=-0.070 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHhH
Q 006830 515 MKMEMAHREIRHTRVEEEKEVFKS 538 (629)
Q Consensus 515 ~kLe~~~~ei~~~k~ale~Al~ra 538 (629)
.....+...+-..+.....+...+
T Consensus 1053 ~~ha~~~q~l~kl~ee~~~~~~e~ 1076 (1822)
T KOG4674|consen 1053 VQHADLTQKLIKLREEFAKCNDEL 1076 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555554443
No 56
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=86.38 E-value=72 Score=37.11 Aligned_cols=77 Identities=19% Similarity=0.275 Sum_probs=52.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHHHH
Q 006830 297 KSVKEELEAAKKELAAIKEEGFRFMAS----------MDVIRNELRHVREETARLKKGEEKTELTVQNLNSKLLRAKAKL 366 (629)
Q Consensus 297 ~~~~~eL~~AK~~L~~~~~E~~~l~~~----------vesLr~ELe~~K~el~~lke~e~~a~~~v~sL~~EL~k~kseL 366 (629)
..+...|..++.....+..++..+..+ +..+..+|+.....+..+.+.........+.+..++......+
T Consensus 313 ~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~l 392 (569)
T PRK04778 313 DTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQL 392 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 346677777777777777777777766 6777777777777777776666666666666666666666666
Q ss_pred HHHHHHH
Q 006830 367 EAVSAAE 373 (629)
Q Consensus 367 e~~~~~E 373 (629)
.......
T Consensus 393 eeie~eq 399 (569)
T PRK04778 393 EEIEKEQ 399 (569)
T ss_pred HHHHHHH
Confidence 6554433
No 57
>PRK04863 mukB cell division protein MukB; Provisional
Probab=85.18 E-value=1.3e+02 Score=39.13 Aligned_cols=87 Identities=15% Similarity=0.203 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------hhhHH-----HHHHHHHhHHHhhHHh
Q 006830 400 EKELVTEETAKIKEEIQKTEAEIYSAEEKIETSMQELNAV--------------KSSEA-----LAFDNLKSLIEKTMQA 460 (629)
Q Consensus 400 ea~~~~~E~~~~k~E~e~~ka~~~t~E~rL~aa~kE~EAa--------------kasE~-----lAla~ikaL~e~~~~~ 460 (629)
+...+...+.+...+....+..|..+..+|..+++..-.- .+-|. .++..+..-..+....
T Consensus 1089 EIe~L~kkL~~~~~e~~~~re~I~~aK~~W~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~ 1168 (1486)
T PRK04863 1089 EMDNLTKKLRKLERDYHEMREQVVNAKAGWCAVLRLVKDNGVERRLHRRELAYLSADELRSMSDKALGALRLAVADNEHL 1168 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHhhhhccCchhhHHHHHHHHHHHHHhccCcHHH
Confidence 3444556666777777777777777777788777654332 11110 0111111111111111
Q ss_pred h----hh-cc-CCCCCccccHHhhHHHHhhHH
Q 006830 461 R----AS-AS-QNSSSITISNFEYEYLRGRAV 486 (629)
Q Consensus 461 ~----~~-~~-~~~~~Itis~eEye~L~~ka~ 486 (629)
+ .+ ++ .++..|++-..=|..|..|+.
T Consensus 1169 ~~~~~~~~~~~~~e~~~~~~~~~~~~~r~r~r 1200 (1486)
T PRK04863 1169 RDVLRLSEDPKRPERKVQFYIAVYQHLRERIR 1200 (1486)
T ss_pred HHHHhhccCCCchhHHHhHHHHHHHHHHHHHh
Confidence 1 11 22 255788999999999999985
No 58
>PRK03918 chromosome segregation protein; Provisional
Probab=84.91 E-value=1e+02 Score=37.45 Aligned_cols=11 Identities=45% Similarity=0.468 Sum_probs=5.1
Q ss_pred HHhhHHHHhhH
Q 006830 475 NFEYEYLRGRA 485 (629)
Q Consensus 475 ~eEye~L~~ka 485 (629)
.++|..+..+.
T Consensus 658 ~~~~~~l~~~~ 668 (880)
T PRK03918 658 EEEYEELREEY 668 (880)
T ss_pred HHHHHHHHHHH
Confidence 34454444444
No 59
>PRK11637 AmiB activator; Provisional
Probab=84.47 E-value=74 Score=35.52 Aligned_cols=52 Identities=13% Similarity=0.270 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006830 41 SRARELHMARRDISRYKESRKAAESVKAQAESELSTARKTVKDLACRIEKTN 92 (629)
Q Consensus 41 ~~e~eL~~aq~el~k~Keql~~aE~~K~qal~ELe~akr~ieeL~~kLe~a~ 92 (629)
..+.+|..+++++...+..+.........+..+|....+.+..+..+|...+
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~ 95 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQ 95 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777777666666666666666666666666666666655555554
No 60
>PHA02562 46 endonuclease subunit; Provisional
Probab=84.35 E-value=82 Score=35.99 Aligned_cols=45 Identities=11% Similarity=0.198 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHh----hHhHHHHHHHHHHHHHHHHHHhhc
Q 006830 217 FSASMEVAKEKLKDLTEEIDH----CKELENKLAVTLYDVNFLHNELKS 261 (629)
Q Consensus 217 ~~~~le~ae~el~~Lk~el~~----~k~Le~kL~ets~~ie~Lq~El~~ 261 (629)
......+.+.++..|+.++.. ..+++..|......+..++..+..
T Consensus 225 l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~ 273 (562)
T PHA02562 225 LVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQ 273 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666542 234555555555555555555544
No 61
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=81.64 E-value=64 Score=34.45 Aligned_cols=64 Identities=11% Similarity=0.195 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHHHHHHHHHH
Q 006830 309 ELAAIKEEGFRFMASMDVIRNELRHVREETARLKKGEEKTELTVQNLNSKLLRAKAKLEAVSAA 372 (629)
Q Consensus 309 ~L~~~~~E~~~l~~~vesLr~ELe~~K~el~~lke~e~~a~~~v~sL~~EL~k~kseLe~~~~~ 372 (629)
.|+++..-...|.+-..+|-.+.......+..++++-+.++..|.+-...|+..--+++.++..
T Consensus 260 ~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~Kqe 323 (384)
T KOG0972|consen 260 ALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQE 323 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556666677777777788888888888888888888888888888877777766553
No 62
>PRK04863 mukB cell division protein MukB; Provisional
Probab=81.29 E-value=1.9e+02 Score=37.89 Aligned_cols=48 Identities=8% Similarity=0.050 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006830 45 ELHMARRDISRYKESRKAAESVKAQAESELSTARKTVKDLACRIEKTN 92 (629)
Q Consensus 45 eL~~aq~el~k~Keql~~aE~~K~qal~ELe~akr~ieeL~~kLe~a~ 92 (629)
+.-.+=+|...|+.+...+...-..+..-|.+....+.+|..+|....
T Consensus 280 ERR~liEEAag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLE 327 (1486)
T PRK04863 280 ERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLE 327 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555555444444444445555555555555444444
No 63
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=80.83 E-value=87 Score=33.77 Aligned_cols=60 Identities=25% Similarity=0.262 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006830 382 NLAFTLEQLKTEAEAAKKEKELVTEETAKIKEEIQKTEAEIYSAEEKIETSMQELNAVKS 441 (629)
Q Consensus 382 ~l~~~Leql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~~~t~E~rL~aa~kE~EAaka 441 (629)
.+...|..+..+.+.-+.....++.++..+...++............+..+.+-.+..+-
T Consensus 213 ~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~ 272 (325)
T PF08317_consen 213 ALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRG 272 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334444444444454455555555566666666666666666666666555555555543
No 64
>PRK09039 hypothetical protein; Validated
Probab=80.66 E-value=93 Score=33.97 Aligned_cols=38 Identities=21% Similarity=0.350 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006830 304 EAAKKELAAIKEEGFRFMASMDVIRNELRHVREETARL 341 (629)
Q Consensus 304 ~~AK~~L~~~~~E~~~l~~~vesLr~ELe~~K~el~~l 341 (629)
......|...+......+.-|..|+.+|+..+..+..|
T Consensus 119 ~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~l 156 (343)
T PRK09039 119 GELAQELDSEKQVSARALAQVELLNQQIAALRRQLAAL 156 (343)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444443333
No 65
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.63 E-value=1.4e+02 Score=36.02 Aligned_cols=133 Identities=20% Similarity=0.232 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhHHHHHHHH----------HHHHHHHHHHHHHhhhhHhh
Q 006830 313 IKEEGFRFMASMDVIRNELRHVREETARLKKGEEKTELTVQNLNSKLLRA----------KAKLEAVSAAEEKANGIAGN 382 (629)
Q Consensus 313 ~~~E~~~l~~~vesLr~ELe~~K~el~~lke~e~~a~~~v~sL~~EL~k~----------kseLe~~~~~Eek~~~~~~~ 382 (629)
.+.++..+....+.-++|+.+.+..+.+++++.......-+-|+..|... ++.|..+....+ .+..-
T Consensus 470 ~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke---~irq~ 546 (1118)
T KOG1029|consen 470 QKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKE---LIRQA 546 (1118)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHH---HHHHH
Confidence 33344444444455555566666666666655555444444555444432 223333222211 12233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhHHHHHHHHHhHHH
Q 006830 383 LAFTLEQLKTEAEAAKKEKELVTEETAKIKEEIQKTEAEIYSAEEKIETSMQ-ELNAVKSSEALAFDNLKSLIE 455 (629)
Q Consensus 383 l~~~Leql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~~~t~E~rL~aa~k-E~EAakasE~lAla~ikaL~e 455 (629)
|-..|..++.|++--. +++.-...-....|..+.+-...++-.-+ +-+.-+.+|..++.-|..-..
T Consensus 547 ikdqldelskE~esk~-------~eidi~n~qlkelk~~~~~q~lake~~yk~e~d~~ke~et~~lel~~~ke~ 613 (1118)
T KOG1029|consen 547 IKDQLDELSKETESKL-------NEIDIFNNQLKELKEDVNSQQLAKEELYKNERDKLKEAETKALELIGEKEA 613 (1118)
T ss_pred HHHHHHHHHHHHHHHH-------HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4445555555555433 34444444444445555555555555544 666678888888777665543
No 66
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=79.20 E-value=1.7e+02 Score=36.23 Aligned_cols=172 Identities=21% Similarity=0.286 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH--
Q 006830 133 LESVKQELSKLKLDMASVLEE---KSRAEKEIEASSLKMRSNSSSVEGLRKEIEEVNEEQVLVELARIEALKEYGEIE-- 207 (629)
Q Consensus 133 L~svk~EL~kl~~e~~~~~ee---k~~A~~~a~ea~~~a~~~~~~~~~l~kei~~~~e~~~~~ela~i~a~~e~~~i~-- 207 (629)
|.-.-.||..++.+..++.+. +....++.. ..++.|.+.|+.+.+-.- .+-.|+-+.....++
T Consensus 176 ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~----------~~~~~l~kdVE~~rer~~--~~~~Ie~l~~k~~~v~y 243 (1072)
T KOG0979|consen 176 LLQYHIELMDLREDEKSLEDKLTTKTEKLNRLE----------DEIDKLEKDVERVRERER--KKSKIELLEKKKKWVEY 243 (1072)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----------HHHHHHHHHHHHHHHHHH--HHHHHHHHHHhccccch
Confidence 444445555555555444333 344455554 344456666666654421 122232222211222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhHhHHHHHHHHHHHHHHHHHHhhchhhhhhhhhcCCCccccccccc
Q 006830 208 AEREKEANEFSASMEVAKEKLKDLTEEI----DHCKELENKLAVTLYDVNFLHNELKSVKDKDKLVQGNDSLKGTHSIYQ 283 (629)
Q Consensus 208 a~~e~~~~~~~~~le~ae~el~~Lk~el----~~~k~Le~kL~ets~~ie~Lq~El~~ak~~e~~~~~~~s~~~~~~~~~ 283 (629)
...+.....|.....-+.+++..|..++ +..++||+...++.+.+-.++.+|..+..-
T Consensus 244 ~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k------------------ 305 (1072)
T KOG0979|consen 244 KKHDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAK------------------ 305 (1072)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHH------------------
Confidence 2334455667777778888888888886 477888888888888888888877643111
Q ss_pred ccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006830 284 SGEELEGSPLLPSKSVKEELEAAKKELAAIKEEGFRFMASMDVIRNELRHVREETARLKKGEE 346 (629)
Q Consensus 284 ~~~~~e~~~~~~~~~~~~eL~~AK~~L~~~~~E~~~l~~~vesLr~ELe~~K~el~~lke~e~ 346 (629)
+ ..+-..|+..-..+.........++...+-....+++.+..+..++....
T Consensus 306 ----------~--~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~ 356 (1072)
T KOG0979|consen 306 ----------V--QEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQ 356 (1072)
T ss_pred ----------H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 1 12233344444444444445555555555555555555555555555444
No 67
>PRK12472 hypothetical protein; Provisional
Probab=79.01 E-value=68 Score=36.57 Aligned_cols=81 Identities=25% Similarity=0.287 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHhhHHhhhhccCCCCCcccc
Q 006830 395 EAAKKEKELVTEETAKIKEEIQKTEAEIYSAEEKIETSMQELNAVKSSEALAFDNLKSLIEKTMQARASASQNSSSITIS 474 (629)
Q Consensus 395 e~Ak~ea~~~~~E~~~~k~E~e~~ka~~~t~E~rL~aa~kE~EAakasE~lAla~ikaL~e~~~~~~~~~~~~~~~Itis 474 (629)
.+++..+.....|+..+...+..+......++..|.++-|-+.+|+..++.+-
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~a~~~l~~adk~l~~a~~d~~~~~--------------------------- 259 (508)
T PRK12472 207 DEAKTAAAAAAREAAPLKASLRKLERAKARADAELKRADKALAAAKTDEAKAR--------------------------- 259 (508)
T ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhh---------------------------
Confidence 33444444444455555555555555555566666666666666665555442
Q ss_pred HHhhHHHHhhHHhhHHhHHHHHHHHHHHHHHHHHHHHH
Q 006830 475 NFEYEYLRGRAVGAEELADKKVAAAQAWIEALKASEKE 512 (629)
Q Consensus 475 ~eEye~L~~ka~eaEe~a~kkvaaA~aqve~akasE~e 512 (629)
+.+....+..++..|..|++.|++---.
T Consensus 260 ----------a~~~~~~~~~~~~~a~~~~~~a~~~~~~ 287 (508)
T PRK12472 260 ----------AEERQQKAAQQAAEAATQLDTAKADAEA 287 (508)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 2244555667777888888888765433
No 68
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=74.30 E-value=2.3e+02 Score=35.18 Aligned_cols=43 Identities=9% Similarity=0.202 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHhHHHhHhhhHHHHHHHHhhhhhh
Q 006830 517 MEMAHREIRHTRVEEEKEVFKSERTRSTKRRVERELRNWRQNS 559 (629)
Q Consensus 517 Le~~~~ei~~~k~ale~Al~raE~A~~aK~avE~ELRrwr~e~ 559 (629)
|+.....++.....+...-...+.-.++-..+-.+|-+|+--.
T Consensus 856 l~~~~~~~e~~~~el~~l~~~i~~~~a~~~~~~~~lE~~~~le 898 (1200)
T KOG0964|consen 856 LESEEKRVEAAILELKTLQDSIDKKKAEIKEIKKELEKAKNLE 898 (1200)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444455555566666677776443
No 69
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=72.62 E-value=88 Score=29.58 Aligned_cols=117 Identities=19% Similarity=0.268 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hcchhhHHHHHHhhhchhhhhhhhhhh
Q 006830 43 ARELHMARRDISRYKESRKAAESVKAQAESELSTARKTVKDLACRIEKTNHQ-AIPSMRYVERLEKSSGIEENVLAERSR 121 (629)
Q Consensus 43 e~eL~~aq~el~k~Keql~~aE~~K~qal~ELe~akr~ieeL~~kLe~a~~~-~~~~~~ele~~r~~e~~~~~~~~~~~~ 121 (629)
..||..++++|+....++..++.+-.+..++|+.|-+++.|-..++..=-.- --..---...+++..... .+..
T Consensus 14 ~aeL~~a~~~I~~~q~r~a~a~~~~~~r~seldqA~~~~~eae~k~~~~~a~~P~~~~~~~wqlkvr~a~~----dv~n- 88 (136)
T PF11570_consen 14 RAELDQADEDIATLQERQASAEQALNGRRSELDQANKKVKEAEIKQDEFFANNPPHEYGRGWQLKVRRAQK----DVQN- 88 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCTT-TTSSCHHHHHHHHHHHHH----HHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcccccccCCCccccccHHHHHHHHHHH----HHHH-
Confidence 4799999999999999999999999999999999999988833332110000 000000111111111000 0000
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006830 122 ESHRYAEVMRELESVKQELSKLKLDMASVLEEKSRAEKEIEAS 164 (629)
Q Consensus 122 e~~qya~~~~EL~svk~EL~kl~~e~~~~~eek~~A~~~a~ea 164 (629)
...++..+-.+|...-.||..++--+..+.+.+...+.+..+|
T Consensus 89 kq~~l~AA~~~l~~~~~el~~~~~al~~A~e~Rkq~eskk~dA 131 (136)
T PF11570_consen 89 KQNKLKAAQKELNAADEELNRIQAALSQAMERRKQKESKKKDA 131 (136)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 0255666666677777777777666666677766555555443
No 70
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=71.71 E-value=1.2e+02 Score=30.61 Aligned_cols=124 Identities=23% Similarity=0.313 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhhHhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 006830 300 KEELEAAKKELAAIKEEGFRFMASMDVIRNELRHVREETARLKKGEEK-TELTVQNLNSKLLRAKAKLEAVSAAEEKANG 378 (629)
Q Consensus 300 ~~eL~~AK~~L~~~~~E~~~l~~~vesLr~ELe~~K~el~~lke~e~~-a~~~v~sL~~EL~k~kseLe~~~~~Eek~~~ 378 (629)
..|+..-+..|-..++....+...+.-...+|.+.+..+..|+..... +-.....|..+|..+...++. .+.+...
T Consensus 67 ~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~---~~~ki~~ 143 (194)
T PF15619_consen 67 NEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQE---KEKKIQE 143 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 444555555555555555555555555555566666666665543331 112345555555555555544 2322222
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006830 379 IAGNLAFTLEQLKTEAEAAKKEKELVTEETAKIKEEIQKTEAEIYSAE 426 (629)
Q Consensus 379 ~~~~l~~~Leql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~~~t~E 426 (629)
.-..+-..-.-+..+.-.-++....++.++..+..|+......|...+
T Consensus 144 Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEKe 191 (194)
T PF15619_consen 144 LEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEKE 191 (194)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111111111122222222233344555566666666655555555443
No 71
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=71.40 E-value=2.2e+02 Score=33.63 Aligned_cols=35 Identities=14% Similarity=0.222 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006830 300 KEELEAAKKELAAIKEEGFRFMASMDVIRNELRHV 334 (629)
Q Consensus 300 ~~eL~~AK~~L~~~~~E~~~l~~~vesLr~ELe~~ 334 (629)
+.-.-+--+++.+=+.|+..+-.....|..||...
T Consensus 490 t~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l 524 (594)
T PF05667_consen 490 TRRILEIVKNIRKQKEEIEKILSDTRELQKEINSL 524 (594)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445566666666666655555555554333
No 72
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=69.02 E-value=1.5e+02 Score=30.82 Aligned_cols=47 Identities=17% Similarity=0.304 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006830 48 MARRDISRYKESRKAAESVKAQAESELSTARKTVKDLACRIEKTNHQ 94 (629)
Q Consensus 48 ~aq~el~k~Keql~~aE~~K~qal~ELe~akr~ieeL~~kLe~a~~~ 94 (629)
.+..+...|-.++...+..-.++..+|.....++..|..++..++.+
T Consensus 2 ~aEr~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeee 48 (246)
T PF00769_consen 2 EAEREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEE 48 (246)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677788888888888888899999999999998888888743
No 73
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=68.92 E-value=1.7e+02 Score=31.49 Aligned_cols=113 Identities=19% Similarity=0.181 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006830 124 HRYAEVMRELESVKQELSKLKLDMASVLEEKS-RAEKEIEASSLKMRSNSSSVEGLRKEIEEVNEEQVLVELARIEALKE 202 (629)
Q Consensus 124 ~qya~~~~EL~svk~EL~kl~~e~~~~~eek~-~A~~~a~ea~~~a~~~~~~~~~l~kei~~~~e~~~~~ela~i~a~~e 202 (629)
+-|..++.||..--.+-+.+=.++..-...-. .-+++-. .+-.+.+. .|+ ..++..+.
T Consensus 71 ely~~~c~EL~~~I~egr~~~~~~E~~~~~~nPpLf~EY~----------~a~~d~r~---~m~--------~q~~~vK~ 129 (325)
T PF08317_consen 71 ELYQFSCRELKKYISEGRQIFEEIEEETYESNPPLFREYY----------TADPDMRL---LMD--------NQFQLVKT 129 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHH----------cCCHHHHH---HHH--------HHHHHHHH
Confidence 56888999999988888888777765443321 0122111 11111111 121 12333444
Q ss_pred HhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHh
Q 006830 203 YGEIEAEREKEANEF-----SASMEVAKEKLKDLTEEIDHCKELENKLAVTLYDVNFLHNEL 259 (629)
Q Consensus 203 ~~~i~a~~e~~~~~~-----~~~le~ae~el~~Lk~el~~~k~Le~kL~ets~~ie~Lq~El 259 (629)
+..+.+.. .--.| ..-...++..+..|+.+..........|....-.+......|
T Consensus 130 ~aRl~aK~--~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L 189 (325)
T PF08317_consen 130 YARLEAKK--MWYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAEL 189 (325)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444322 11233 334445777777777777655555555555554444444443
No 74
>PRK09039 hypothetical protein; Validated
Probab=68.39 E-value=1.9e+02 Score=31.65 Aligned_cols=39 Identities=10% Similarity=0.216 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006830 392 TEAEAAKKEKELVTEETAKIKEEIQKTEAEIYSAEEKIE 430 (629)
Q Consensus 392 ~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~~~t~E~rL~ 430 (629)
.+....+......+-.+..++.+|+..+..+...+..|.
T Consensus 123 ~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~ 161 (343)
T PRK09039 123 QELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALD 161 (343)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333444444444444444443333333
No 75
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=67.22 E-value=1.9e+02 Score=31.28 Aligned_cols=61 Identities=16% Similarity=0.192 Sum_probs=36.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006830 381 GNLAFTLEQLKTEAEAAKKEKELVTEETAKIKEEIQKTEAEIYSAEEKIETSMQELNAVKS 441 (629)
Q Consensus 381 ~~l~~~Leql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~~~t~E~rL~aa~kE~EAaka 441 (629)
..+...|..+..+....+..-...+.++..+...++............+..+.+-.+-.+.
T Consensus 207 ~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~ 267 (312)
T smart00787 207 DRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRG 267 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3344445555555555555566666666666666666666666666666666665555543
No 76
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=65.84 E-value=1.2e+02 Score=28.38 Aligned_cols=47 Identities=26% Similarity=0.378 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006830 384 AFTLEQLKTEAEAAKKEKELVTEETAKIKEEIQKTEAEIYSAEEKIETSMQELN 437 (629)
Q Consensus 384 ~~~Leql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~~~t~E~rL~aa~kE~E 437 (629)
...|..++.+....+ .++..++.+++.++..+...+..|..-...++
T Consensus 58 ~~~L~~lr~e~~~~~-------~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le 104 (132)
T PF07926_consen 58 IKELQQLREELQELQ-------QEINELKAEAESAKAELEESEASWEEQKEQLE 104 (132)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 444555555554444 45555556666666666666666655544444
No 77
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=64.96 E-value=3.1e+02 Score=33.00 Aligned_cols=35 Identities=17% Similarity=0.301 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcchhhHHHHHH
Q 006830 72 SELSTARKTVKDLACRIEKTNHQAIPSMRYVERLE 106 (629)
Q Consensus 72 ~ELe~akr~ieeL~~kLe~a~~~~~~~~~ele~~r 106 (629)
.||...+-.=+||..+|..-...+.....+|..+|
T Consensus 432 aeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr 466 (697)
T PF09726_consen 432 AELQSSRQSEQELRSQISSLTNNERSLKSELSQLR 466 (697)
T ss_pred HHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHH
Confidence 44555555555555554433333333444444444
No 78
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=64.40 E-value=1.6e+02 Score=29.53 Aligned_cols=107 Identities=16% Similarity=0.202 Sum_probs=62.7
Q ss_pred HHHHhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006830 339 ARLKKGEEKTELTVQNLNSKLLRAKAKLEAVSAAEEKANGIAGNLAFTLEQLKTEAEAAKKEKELVTEETAKIKEEIQKT 418 (629)
Q Consensus 339 ~~lke~e~~a~~~v~sL~~EL~k~kseLe~~~~~Eek~~~~~~~l~~~Leql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ 418 (629)
..|......+...|+.....|..+..-+..+...-..+..-+..|...|+.+..-...+...+..++.++..-..-++.+
T Consensus 70 eqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLeaA 149 (188)
T PF05335_consen 70 EQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAEKTQLLEAA 149 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444555544444444433333334455666666666666666666667777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 006830 419 EAEIYSAEEKIETSMQELNAVKSSEAL 445 (629)
Q Consensus 419 ka~~~t~E~rL~aa~kE~EAakasE~l 445 (629)
+..+......|..++.+.+..|.+=..
T Consensus 150 k~Rve~L~~QL~~Ar~D~~~tk~aA~k 176 (188)
T PF05335_consen 150 KRRVEELQRQLQAARADYEKTKKAAYK 176 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777766554433
No 79
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=63.95 E-value=2.1e+02 Score=30.71 Aligned_cols=64 Identities=20% Similarity=0.232 Sum_probs=37.2
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006830 377 NGIAGNLAFTLEQLKTEAEAAKKEKELVTEETAKIKEEIQKTEAEIYSAEEKIETSMQELNAVK 440 (629)
Q Consensus 377 ~~~~~~l~~~Leql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~~~t~E~rL~aa~kE~EAak 440 (629)
.+.|-.++.....+..+++....+.......+..+..++.++...|...+.+|.+......+++
T Consensus 192 he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~~~~~~~~ 255 (294)
T COG1340 192 HEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALRAKEKAAK 255 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555556666666666655556666666666666666666666666655554444443
No 80
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=63.43 E-value=4.2e+02 Score=33.93 Aligned_cols=101 Identities=21% Similarity=0.299 Sum_probs=65.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHH-HHh
Q 006830 298 SVKEELEAAKKELAAIKEEGFRFMASMDVIRNELRHVREETARLKKGEEKTELTVQNLNSKLLRAKAKLEAVSAAE-EKA 376 (629)
Q Consensus 298 ~~~~eL~~AK~~L~~~~~E~~~l~~~vesLr~ELe~~K~el~~lke~e~~a~~~v~sL~~EL~k~kseLe~~~~~E-ek~ 376 (629)
.+..+|+.+...|+........+-......+..++..+.++..++.....+...+..|..+....+.++....... ...
T Consensus 604 ~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 683 (1201)
T PF12128_consen 604 ELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQI 683 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777777777777777777777777777777666677777777777777766654433 222
Q ss_pred hhhHhhHHHHHHHHHHHHHHHH
Q 006830 377 NGIAGNLAFTLEQLKTEAEAAK 398 (629)
Q Consensus 377 ~~~~~~l~~~Leql~~Eae~Ak 398 (629)
......+...+.++..+-....
T Consensus 684 ~~~l~~l~~~l~~~~~e~~~~~ 705 (1201)
T PF12128_consen 684 EEQLNELEEELKQLKQELEELL 705 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 2234445555555554444333
No 81
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=63.29 E-value=1.4e+02 Score=28.46 Aligned_cols=36 Identities=22% Similarity=0.233 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006830 381 GNLAFTLEQLKTEAEAAKKEKELVTEETAKIKEEIQ 416 (629)
Q Consensus 381 ~~l~~~Leql~~Eae~Ak~ea~~~~~E~~~~k~E~e 416 (629)
..|..-++.|-.+.+.+......+...++.+-.-++
T Consensus 76 E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae 111 (143)
T PF12718_consen 76 EQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAE 111 (143)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 355555666655555555444444444443333333
No 82
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=62.77 E-value=2.5e+02 Score=31.05 Aligned_cols=127 Identities=19% Similarity=0.231 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006830 300 KEELEAAKKELAAIKEEGFRFMASMDVIRNELRHVREETARLKKGEEKTELTVQNLNSKLLRAKAKLEAVSAAEEKANGI 379 (629)
Q Consensus 300 ~~eL~~AK~~L~~~~~E~~~l~~~vesLr~ELe~~K~el~~lke~e~~a~~~v~sL~~EL~k~kseLe~~~~~Eek~~~~ 379 (629)
..-|++++.....+..-....+.-.+.|..++.+. ++.+.-+|+.-......|-.+....+.+|..++..=..+...
T Consensus 219 R~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~---lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~ 295 (359)
T PF10498_consen 219 RSHLEQMKQHKKSIESALPETKSQLDKLQQDISKT---LEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEG 295 (359)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 34455555444444433333333333333333222 233334444444455555556666666666544433333334
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Q 006830 380 AGNLAFTLEQLKTEAEAAKKEKELVT------EETAKIKEEIQKTEAEIYSAEEKI 429 (629)
Q Consensus 380 ~~~l~~~Leql~~Eae~Ak~ea~~~~------~E~~~~k~E~e~~ka~~~t~E~rL 429 (629)
+..+...|.+++.+.+..|.+-+.-- .=+.++|.-+-..+..|.++..|+
T Consensus 296 V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~qMdvrI 351 (359)
T PF10498_consen 296 VSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQMDVRI 351 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 66777777777777777776533310 125566666677777777777665
No 83
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=62.71 E-value=4.5e+02 Score=34.13 Aligned_cols=39 Identities=3% Similarity=-0.066 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q 006830 499 AQAWIEALKASEKEILMKMEMAHREIRHTRVEEEKEVFK 537 (629)
Q Consensus 499 A~aqve~akasE~e~l~kLe~~~~ei~~~k~ale~Al~r 537 (629)
.+.+...+...=.+.+..+.....+++.-...+..+...
T Consensus 443 ~L~~~~~~~e~a~~~~~~~~~~~~el~~~~~~~~e~~~~ 481 (1353)
T TIGR02680 443 LLRRRDDVADRAEATHAAARARRDELDEEAEQAAARAEL 481 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444556666666666666555555554443
No 84
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=62.39 E-value=3.4e+02 Score=32.53 Aligned_cols=50 Identities=18% Similarity=0.238 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHHH
Q 006830 316 EGFRFMASMDVIRNELR-HVREETARLKKGEEKTELTVQNLNSKLLRAKAK 365 (629)
Q Consensus 316 E~~~l~~~vesLr~ELe-~~K~el~~lke~e~~a~~~v~sL~~EL~k~kse 365 (629)
-...++.+.++++.+|. .-+.....++++..+.-..|..|...|.++...
T Consensus 552 ~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~ 602 (961)
T KOG4673|consen 552 QALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQ 602 (961)
T ss_pred HHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666667777663 333445677777777777788887777765444
No 85
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=62.37 E-value=1.5e+02 Score=28.42 Aligned_cols=54 Identities=17% Similarity=0.223 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhHHHHHHHH
Q 006830 309 ELAAIKEEGFRFMASMDVIRNELRHVREETARLKKGEEKTELTVQNLNSKLLRA 362 (629)
Q Consensus 309 ~L~~~~~E~~~l~~~vesLr~ELe~~K~el~~lke~e~~a~~~v~sL~~EL~k~ 362 (629)
.|..+..+...|..-|.+|-.+|+.+..+...+--.-..+...|..|+.++.-+
T Consensus 11 kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~l 64 (140)
T PF10473_consen 11 KLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEEL 64 (140)
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566666666666666666666655443333334444444444433
No 86
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=61.66 E-value=4.4e+02 Score=33.61 Aligned_cols=41 Identities=12% Similarity=0.162 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006830 49 ARRDISRYKESRKAAESVKAQAESELSTARKTVKDLACRIE 89 (629)
Q Consensus 49 aq~el~k~Keql~~aE~~K~qal~ELe~akr~ieeL~~kLe 89 (629)
+|.+.+.+.+++...+..|-.+...+...++-++++..+..
T Consensus 492 ~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~ 532 (1317)
T KOG0612|consen 492 LQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKND 532 (1317)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555554444444444444433333
No 87
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=60.04 E-value=3.7e+02 Score=32.19 Aligned_cols=109 Identities=23% Similarity=0.285 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh-------HhhHHHHHHHHHHHHHHHHHHH
Q 006830 301 EELEAAKKELAAIKEEGFRFMASMDVIRNELRHVREETARLKKGEEKTELT-------VQNLNSKLLRAKAKLEAVSAAE 373 (629)
Q Consensus 301 ~eL~~AK~~L~~~~~E~~~l~~~vesLr~ELe~~K~el~~lke~e~~a~~~-------v~sL~~EL~k~kseLe~~~~~E 373 (629)
.++..-...|..+......+..-|..|+.+|++++---..|-.+-...+.. .+..-.++.+....+...+..+
T Consensus 450 kev~dLe~~l~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qe 529 (786)
T PF05483_consen 450 KEVHDLEIQLTTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSKKQE 529 (786)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 334444445555555555556666777777776665555554333333321 1222233333333444443344
Q ss_pred HHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006830 374 EKANGIAGNLAFTLEQLKTEAEAAKKEKELVTEETA 409 (629)
Q Consensus 374 ek~~~~~~~l~~~Leql~~Eae~Ak~ea~~~~~E~~ 409 (629)
++.-..+.+|-..=.+++.+.+..+.+......|+.
T Consensus 530 e~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~ 565 (786)
T PF05483_consen 530 EKMLKQIENLEETNTQLRNELESVKEELKQKGEEVK 565 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444334444544444555555544444444444433
No 88
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=59.76 E-value=3.1e+02 Score=31.31 Aligned_cols=35 Identities=20% Similarity=0.317 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhhhhH-----HHHHHHHHhHHHhhHHh
Q 006830 426 EEKIETSMQELNAVKSSE-----ALAFDNLKSLIEKTMQA 460 (629)
Q Consensus 426 E~rL~aa~kE~EAakasE-----~lAla~ikaL~e~~~~~ 460 (629)
+.-|.+.=--+|||||.| ++.-++++.|.+.+..+
T Consensus 372 QTNLLALNAaIEAARAGE~GrGFAVVA~EVr~LA~~t~~s 411 (553)
T PRK15048 372 QTNILALNAAVEAARAGEQGRGFAVVAGEVRNLASRSAQA 411 (553)
T ss_pred HHHHHHHHHHHHHhccccCCCCChhHHHHHHHHHHHHHHH
Confidence 456778888899999999 66669999998765433
No 89
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=59.38 E-value=2.6e+02 Score=30.23 Aligned_cols=42 Identities=21% Similarity=0.347 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006830 301 EELEAAKKELAAIKEEGFRFMASMDVIRNELRHVREETARLK 342 (629)
Q Consensus 301 ~eL~~AK~~L~~~~~E~~~l~~~vesLr~ELe~~K~el~~lk 342 (629)
.+|+.++..|..+..++...+..+..++.+|......+....
T Consensus 204 ~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~ 245 (312)
T smart00787 204 TELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLT 245 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666655555555555555544444444433
No 90
>PTZ00464 SNF-7-like protein; Provisional
Probab=58.91 E-value=2.1e+02 Score=29.13 Aligned_cols=24 Identities=13% Similarity=0.176 Sum_probs=12.4
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHH
Q 006830 38 SSSSRARELHMARRDISRYKESRK 61 (629)
Q Consensus 38 ~~~~~e~eL~~aq~el~k~Keql~ 61 (629)
+...++..+..+..++.+|++++.
T Consensus 26 r~~~l~kKi~~ld~E~~~ak~~~k 49 (211)
T PTZ00464 26 RSEVVDARINKIDAELMKLKEQIQ 49 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555553
No 91
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=57.31 E-value=3.3e+02 Score=30.76 Aligned_cols=17 Identities=12% Similarity=-0.093 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006830 305 AAKKELAAIKEEGFRFM 321 (629)
Q Consensus 305 ~AK~~L~~~~~E~~~l~ 321 (629)
+....|..+..++..++
T Consensus 161 ~~i~~l~~~~~~l~~~~ 177 (420)
T COG4942 161 ERIDALKATLKQLAAVR 177 (420)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 92
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=55.80 E-value=1.7e+02 Score=30.55 Aligned_cols=57 Identities=18% Similarity=0.252 Sum_probs=49.4
Q ss_pred cCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006830 289 EGSPLLPSKSVKEELEAAKKELAAIKEEGFRFMASMDVIRNELRHVREETARLKKGEEK 347 (629)
Q Consensus 289 e~~~~~~~~~~~~eL~~AK~~L~~~~~E~~~l~~~vesLr~ELe~~K~el~~lke~e~~ 347 (629)
.+..+| ..|+.+=+--+.-...+-.|.......+..|+.|++..+.....|=||..-
T Consensus 76 ~~~siL--pIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRy 132 (248)
T PF08172_consen 76 GDSSIL--PIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRY 132 (248)
T ss_pred CcccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666 778999999999999999999999999999999999999999999887753
No 93
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=55.60 E-value=4.1e+02 Score=31.40 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 006830 323 SMDVIRNELRHVREETARLKKGEE 346 (629)
Q Consensus 323 ~vesLr~ELe~~K~el~~lke~e~ 346 (629)
.+..|..++.....++..+..+..
T Consensus 392 ~~~~~~~~~~~~e~el~~l~~~l~ 415 (650)
T TIGR03185 392 AKSQLLKELRELEEELAEVDKKIS 415 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444433
No 94
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=54.61 E-value=5.4e+02 Score=32.42 Aligned_cols=54 Identities=15% Similarity=0.213 Sum_probs=37.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 006830 297 KSVKEELEAAKKELAAIKEEGFRFMASMDVIRNELRHVREETARLKKGEEKTEL 350 (629)
Q Consensus 297 ~~~~~eL~~AK~~L~~~~~E~~~l~~~vesLr~ELe~~K~el~~lke~e~~a~~ 350 (629)
.....++...++.+..+..+...|..-+.++.+.+++-..+.-.+-..-+...+
T Consensus 852 ~~~~~e~~e~~k~~~~~~~~~tkl~~~i~~~es~ie~~~~er~~lL~~ckl~~I 905 (1141)
T KOG0018|consen 852 EKKEDEINEVKKILRRLVKELTKLDKEITSIESKIERKESERHNLLSKCKLEDI 905 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhhccc
Confidence 345667777777777777777777777777777777777776666555544443
No 95
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=53.88 E-value=2.6e+02 Score=28.49 Aligned_cols=74 Identities=20% Similarity=0.303 Sum_probs=50.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHHHHHHHH
Q 006830 297 KSVKEELEAAKKELAAIKEEGFRFMASMDVIRNELRHVREETARLKKGEEKTELTVQNLNSKLLRAKAKLEAVS 370 (629)
Q Consensus 297 ~~~~~eL~~AK~~L~~~~~E~~~l~~~vesLr~ELe~~K~el~~lke~e~~a~~~v~sL~~EL~k~kseLe~~~ 370 (629)
..++.+|.++..++..=-.|+.+|+..+..++..|..-...+..++.........+...+.+|.+.+++.+.++
T Consensus 13 sLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLr 86 (202)
T PF06818_consen 13 SLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLR 86 (202)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhh
Confidence 55788888888888877778888888888888888777777777766555555555555555555555544443
No 96
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=52.98 E-value=4.5 Score=48.18 Aligned_cols=13 Identities=15% Similarity=0.036 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHH
Q 006830 196 RIEALKEYGEIEA 208 (629)
Q Consensus 196 ~i~a~~e~~~i~a 208 (629)
..+++++...+..
T Consensus 292 ~a~~LrDElD~lR 304 (713)
T PF05622_consen 292 EARALRDELDELR 304 (713)
T ss_dssp -------------
T ss_pred HHHHHhhhHHHHH
Confidence 3445555444433
No 97
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=51.48 E-value=82 Score=31.60 Aligned_cols=123 Identities=15% Similarity=0.110 Sum_probs=0.0
Q ss_pred ccccccchhhhhhhhcCCCCCcccccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006830 7 DYQRRTGSVKAAGNMYGGSPSVKKSHLDIPESSSSRARELHMARRDISRYKESRKAAESVKAQAESELSTARKTVKDLAC 86 (629)
Q Consensus 7 DT~aP~eSVK~Avs~FG~~~~~kk~~~~~~e~~~~~e~eL~~aq~el~k~Keql~~aE~~K~qal~ELe~akr~ieeL~~ 86 (629)
|.++-|++-..+++-|-+-...=++-..|..+...+..+.....+++.....++...+..+.+...++......|.+|..
T Consensus 66 d~~~~f~~~~~tl~~LE~~GFnV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~ 145 (190)
T PF05266_consen 66 DSRSSFESLMKTLSELEEHGFNVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQR 145 (190)
T ss_pred CcHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhhhcchhhHHHHHHhhhchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006830 87 RIEKTNHQAIPSMRYVERLEKSSGIEENVLAERSRESHRYAEVMRELESVKQELSKLKLDMASVLEE 153 (629)
Q Consensus 87 kLe~a~~~~~~~~~ele~~r~~e~~~~~~~~~~~~e~~qya~~~~EL~svk~EL~kl~~e~~~~~ee 153 (629)
............+.+|..++ ++....++++..++.+|.+++.+
T Consensus 146 ~~~~~~~~ke~~~~ei~~lk------------------------s~~~~l~~~~~~~e~~F~~~~aa 188 (190)
T PF05266_consen 146 QAAKLKEKKEAKDKEISRLK------------------------SEAEALKEEIENAELEFQSVAAA 188 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHhcC
No 98
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=51.37 E-value=2.5e+02 Score=27.52 Aligned_cols=119 Identities=16% Similarity=0.217 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhhhHhhHH
Q 006830 305 AAKKELAAIKEEGFRFMASMDVIRNELRHVREETARLKKGEEKTELTVQNLNSKLLRAKAKLEAVSAAEEKANGIAGNLA 384 (629)
Q Consensus 305 ~AK~~L~~~~~E~~~l~~~vesLr~ELe~~K~el~~lke~e~~a~~~v~sL~~EL~k~kseLe~~~~~Eek~~~~~~~l~ 384 (629)
.+=..++..+.+++.+ .++.|.|++..+.+|..++......-..|-.|+..-.+++..|-.+...=.++.+
T Consensus 6 ~ti~~ie~sK~qIf~I---~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE------ 76 (159)
T PF05384_consen 6 KTIDTIESSKEQIFEI---AEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSE------ 76 (159)
T ss_pred HHHHHHHhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCH------
Confidence 3344556666666655 4556778888888888888777777778888888888888888765432222211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006830 385 FTLEQLKTEAEAAKKEKELVTEETAKIKEEIQKTEAEIYSAEEKIETSMQELNAV 439 (629)
Q Consensus 385 ~~Leql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~~~t~E~rL~aa~kE~EAa 439 (629)
.+...|=..|..++-.+.-.++.-.+.+..-+..|.||......++-|
T Consensus 77 -------~dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierA 124 (159)
T PF05384_consen 77 -------EDIKEAYEEAHELQVRLAMLREREKQLRERRDELERRLRNLEETIERA 124 (159)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122223334456667777777777888888888888888877777654
No 99
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=50.82 E-value=6.5e+02 Score=32.25 Aligned_cols=35 Identities=23% Similarity=0.201 Sum_probs=15.9
Q ss_pred hhHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006830 483 GRAVGAEELADKKVAAAQAWIEALKASEKEILMKM 517 (629)
Q Consensus 483 ~ka~eaEe~a~kkvaaA~aqve~akasE~e~l~kL 517 (629)
.+....+...+-.+.....++..++..=.+-+..+
T Consensus 721 ~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~l 755 (1201)
T PF12128_consen 721 AQWQELEAELDEQIEQIKQEIAAAKQEAKEQLKEL 755 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555555555544333333333
No 100
>PRK10884 SH3 domain-containing protein; Provisional
Probab=50.27 E-value=2.2e+02 Score=28.89 Aligned_cols=16 Identities=6% Similarity=0.283 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 006830 325 DVIRNELRHVREETAR 340 (629)
Q Consensus 325 esLr~ELe~~K~el~~ 340 (629)
.-|..+|...+..++.
T Consensus 96 p~le~el~~l~~~l~~ 111 (206)
T PRK10884 96 PDLENQVKTLTDKLNN 111 (206)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444433333
No 101
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=49.14 E-value=1.2e+02 Score=32.14 Aligned_cols=69 Identities=12% Similarity=0.197 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHHHHH
Q 006830 299 VKEELEAAKKELAAIKEEGFRFMASMDVIRNELRHVREETARLKKGEEKTELTVQNLNSKLLRAKAKLE 367 (629)
Q Consensus 299 ~~~eL~~AK~~L~~~~~E~~~l~~~vesLr~ELe~~K~el~~lke~e~~a~~~v~sL~~EL~k~kseLe 367 (629)
++.-+......++.++..+..+...-.+|...|++-|.++++.+.+.....+.=..--.|..++..+|.
T Consensus 167 l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~ 235 (267)
T PF10234_consen 167 LKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQ 235 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 344444445555555555555555555555555555555555555555433333333334444433333
No 102
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=48.51 E-value=5e+02 Score=30.27 Aligned_cols=159 Identities=14% Similarity=0.184 Sum_probs=83.6
Q ss_pred hhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHHHHHHHHH
Q 006830 297 KSVKEELEAAKKELA-----AIKEEGFRFMASMDVIRNELRHVREETARLKKGEEKTELTVQNLNSKLLRAKAKLEAVSA 371 (629)
Q Consensus 297 ~~~~~eL~~AK~~L~-----~~~~E~~~l~~~vesLr~ELe~~K~el~~lke~e~~a~~~v~sL~~EL~k~kseLe~~~~ 371 (629)
..+..++..+...|. .+......+..-++.|-.-|+++.................+..+......+..+++.+..
T Consensus 259 ~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~ 338 (569)
T PRK04778 259 QDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQ 338 (569)
T ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455554333333 333345556666666666666666666666555555555666666666666666666544
Q ss_pred H----HHHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 006830 372 A----EEKANGIAGNLAFTLEQLKTEAEAAKKEKELVTEETAKIKEEIQKTEAEIYSAEEKIETSMQELNAVKSSEALAF 447 (629)
Q Consensus 372 ~----Eek~~~~~~~l~~~Leql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~~~t~E~rL~aa~kE~EAakasE~lAl 447 (629)
. +... .....+...|+.+.............-......+..+.+.....+...+.........+...+..|.-|.
T Consensus 339 sY~l~~~e~-~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr 417 (569)
T PRK04778 339 SYTLNESEL-ESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAR 417 (569)
T ss_pred ccccCchhH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 1100 1123333344444433332222222222234455555555666666666666666677777777777776
Q ss_pred HHHHhHHHh
Q 006830 448 DNLKSLIEK 456 (629)
Q Consensus 448 a~ikaL~e~ 456 (629)
..+..+...
T Consensus 418 ~kL~~~~~~ 426 (569)
T PRK04778 418 EKLERYRNK 426 (569)
T ss_pred HHHHHHHHH
Confidence 666666543
No 103
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=48.29 E-value=2.3e+02 Score=30.18 Aligned_cols=82 Identities=17% Similarity=0.339 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006830 124 HRYAEVMRELESVKQELSKLKLDMASVLEEKSRAEKEIEASSLKMRSNSSSVEGLRKEIEEVNEEQVLVELARIEALKEY 203 (629)
Q Consensus 124 ~qya~~~~EL~svk~EL~kl~~e~~~~~eek~~A~~~a~ea~~~a~~~~~~~~~l~kei~~~~e~~~~~ela~i~a~~e~ 203 (629)
+||-+=+.-=+..-.=|..-=+|-..-+..++ .-+++|+..+..|++.-+.-|=.|.+|+..
T Consensus 57 EQYLTPLQQKEV~iRHLkakLkes~~~l~dRe-----------------tEI~eLksQL~RMrEDWIEEECHRVEAQLA- 118 (305)
T PF15290_consen 57 EQYLTPLQQKEVCIRHLKAKLKESENRLHDRE-----------------TEIDELKSQLARMREDWIEEECHRVEAQLA- 118 (305)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHHhhH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 006830 204 GEIEAEREKEANEFSASMEVAKEKLKDLTEEIDHCKE 240 (629)
Q Consensus 204 ~~i~a~~e~~~~~~~~~le~ae~el~~Lk~el~~~k~ 240 (629)
|++|.+||++|++=++-.++
T Consensus 119 -----------------LKEARkEIkQLkQvieTmrs 138 (305)
T PF15290_consen 119 -----------------LKEARKEIKQLKQVIETMRS 138 (305)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHh
No 104
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=46.95 E-value=2.7e+02 Score=29.18 Aligned_cols=60 Identities=18% Similarity=0.195 Sum_probs=53.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHhhc
Q 006830 202 EYGEIEAEREKEANEFSASMEVAKEKLKDLTEEIDHCKELENKLAVTLYDVNFLHNELKS 261 (629)
Q Consensus 202 e~~~i~a~~e~~~~~~~~~le~ae~el~~Lk~el~~~k~Le~kL~ets~~ie~Lq~El~~ 261 (629)
+|.+.+-+.....+.|-..|-.-...|..|-.+...++--..+|+--...|..-|.||+.
T Consensus 89 ~Qe~vF~~q~~qvNaWDr~LI~ngekI~~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~ 148 (254)
T KOG2196|consen 89 EQERVFLQQATQVNAWDRTLIENGEKISGLYNEVVKVKLDQKRLDQELEFILSQQQELED 148 (254)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777778899999999999999999999999999999999999999999999986
No 105
>PF15294 Leu_zip: Leucine zipper
Probab=45.99 E-value=4e+02 Score=28.45 Aligned_cols=123 Identities=20% Similarity=0.321 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhh---------hHhhHHHHHHHHHHHHHHH
Q 006830 327 IRNELRHVREETARLKKGEEKTELTVQNLNSKLLRAKAKLEAVSAAEEKANG---------IAGNLAFTLEQLKTEAEAA 397 (629)
Q Consensus 327 Lr~ELe~~K~el~~lke~e~~a~~~v~sL~~EL~k~kseLe~~~~~Eek~~~---------~~~~l~~~Leql~~Eae~A 397 (629)
|..|+...+.+...|+.+...........-.+-.++...|..++......+. .+.+|...|-.++.+.+.+
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek~ 209 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEKA 209 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433333333333333334333332221111 1455666666666665543
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhH
Q 006830 398 KKEKELVTEETAKIKEEIQKTEAEIYSAEEKIETSMQELNAVKSSEALAFDNLKSL 453 (629)
Q Consensus 398 k~ea~~~~~E~~~~k~E~e~~ka~~~t~E~rL~aa~kE~EAakasE~lAla~ikaL 453 (629)
- .........+......++..+-.....|..+.++.+. |-.+.-+.-.|+.+
T Consensus 210 ~---~d~~~~~k~L~e~L~~~KhelL~~QeqL~~aekeLek-KfqqT~ay~NMk~~ 261 (278)
T PF15294_consen 210 L---QDKESQQKALEETLQSCKHELLRVQEQLSLAEKELEK-KFQQTAAYRNMKEI 261 (278)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHhcchhhhcchhhHHH-HhCccHHHHHhHHH
Confidence 2 2333344455555555555555555556666666655 44455555555544
No 106
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=45.92 E-value=3.6e+02 Score=27.82 Aligned_cols=74 Identities=16% Similarity=0.178 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHH
Q 006830 316 EGFRFMASMDVIRNELRHVREETARLKKGEEKTELTVQNLNSKLLRAKAKLEAVSAAEEKANGIAGNLAFTLEQ 389 (629)
Q Consensus 316 E~~~l~~~vesLr~ELe~~K~el~~lke~e~~a~~~v~sL~~EL~k~kseLe~~~~~Eek~~~~~~~l~~~Leq 389 (629)
.+..+..-...|..++.....++..|+.........|.+++.++..+..+++.+........-.|..|...|++
T Consensus 43 ~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~ 116 (251)
T PF11932_consen 43 RIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQ 116 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555556666666555555566777777887777777777655443333334444444443
No 107
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=45.64 E-value=94 Score=25.60 Aligned_cols=45 Identities=20% Similarity=0.340 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHHHHHHHH
Q 006830 326 VIRNELRHVREETARLKKGEEKTELTVQNLNSKLLRAKAKLEAVS 370 (629)
Q Consensus 326 sLr~ELe~~K~el~~lke~e~~a~~~v~sL~~EL~k~kseLe~~~ 370 (629)
++..||.++|...-.+..+...+......|..++..++-+++.++
T Consensus 15 ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 15 AIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456677777777777777777777777777777777666665543
No 108
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=44.16 E-value=1.9e+02 Score=29.77 Aligned_cols=80 Identities=19% Similarity=0.248 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHhhchhhhhhhhhcCCCcccccccccccccccCCCCCCchhHHH
Q 006830 222 EVAKEKLKDLTEEIDHCKELENKLAVTLYDVNFLHNELKSVKDKDKLVQGNDSLKGTHSIYQSGEELEGSPLLPSKSVKE 301 (629)
Q Consensus 222 e~ae~el~~Lk~el~~~k~Le~kL~ets~~ie~Lq~El~~ak~~e~~~~~~~s~~~~~~~~~~~~~~e~~~~~~~~~~~~ 301 (629)
+++.++...+++.......|+++.+.+.+++..|+.+++
T Consensus 130 ~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~----------------------------------------- 168 (216)
T KOG1962|consen 130 EKAMKENEALKKQLENSSKLEEENDKLKADLEKLETELE----------------------------------------- 168 (216)
T ss_pred HHHHHHHHHHHHhhhcccchhhhHHHHHhhHHHHHHHHH-----------------------------------------
Confidence 566677777788777666688777777777777666553
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006830 302 ELEAAKKELAAIKEEGFRFMASMDVIRNELRHVREETARLKKGE 345 (629)
Q Consensus 302 eL~~AK~~L~~~~~E~~~l~~~vesLr~ELe~~K~el~~lke~e 345 (629)
.-...|+....+...+..-.+.+..|-++...+...|++..
T Consensus 169 ---~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 169 ---KKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 33344444555555566666666666766666666666543
No 109
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=41.44 E-value=3.5e+02 Score=26.46 Aligned_cols=33 Identities=21% Similarity=0.289 Sum_probs=16.2
Q ss_pred HHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHhh
Q 006830 228 LKDLTEEIDHCKELENKLAVTLYDVNFLHNELK 260 (629)
Q Consensus 228 l~~Lk~el~~~k~Le~kL~ets~~ie~Lq~El~ 260 (629)
+..+...+....+++.---.-.+.+..|+.+|.
T Consensus 36 ~~~~~~~~vtk~d~e~~~~~~~a~~~eLr~el~ 68 (177)
T PF07798_consen 36 LEKVAQDLVTKSDLENQEYLFKAAIAELRSELQ 68 (177)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444555444444555555555554
No 110
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=40.75 E-value=3.2e+02 Score=26.38 Aligned_cols=62 Identities=19% Similarity=0.298 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hhhhhHhhHHHHHHHHHHHHHHHHH
Q 006830 303 LEAAKKELAAIKEEGFRFMASMDVIRNELRHVREETARLKKGEE--KTELTVQNLNSKLLRAKAKLEAVSA 371 (629)
Q Consensus 303 L~~AK~~L~~~~~E~~~l~~~vesLr~ELe~~K~el~~lke~e~--~a~~~v~sL~~EL~k~kseLe~~~~ 371 (629)
|..-..++..++.++..+...+..|+.+| ..|..... .....|.+|..++..+...|+.++.
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL-------~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAEL-------ASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333334444444444444444444444 44433332 1223566777777777777776654
No 111
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=39.58 E-value=4e+02 Score=26.57 Aligned_cols=94 Identities=19% Similarity=0.236 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhhhHhhHH
Q 006830 305 AAKKELAAIKEEGFRFMASMDVIRNELRHVREETARLKKGEEKTELTVQNLNSKLLRAKAKLEAVSAAEEKANGIAGNLA 384 (629)
Q Consensus 305 ~AK~~L~~~~~E~~~l~~~vesLr~ELe~~K~el~~lke~e~~a~~~v~sL~~EL~k~kseLe~~~~~Eek~~~~~~~l~ 384 (629)
.-+..++.+..++..+......|...|+..+.......++.. .-.....|..++..++.+|+.... .=|
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~-~l~~l~~l~~~~~~l~~el~~~~~----------~Dp 134 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREE-LLEELEELKKELKELKKELEKYSE----------NDP 134 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh----------cCH
Confidence 344455555555555555555555555555544443333222 112344555555555555553211 125
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006830 385 FTLEQLKTEAEAAKKEKELVTEETA 409 (629)
Q Consensus 385 ~~Leql~~Eae~Ak~ea~~~~~E~~ 409 (629)
..++++..++..++..+...-..+-
T Consensus 135 ~~i~~~~~~~~~~~~~anrwTDNI~ 159 (188)
T PF03962_consen 135 EKIEKLKEEIKIAKEAANRWTDNIF 159 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 6677777777766665554444433
No 112
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=38.15 E-value=4.3e+02 Score=26.54 Aligned_cols=43 Identities=21% Similarity=0.235 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006830 381 GNLAFTLEQLKTEAEAAKKEKELVTEETAKIKEEIQKTEAEIY 423 (629)
Q Consensus 381 ~~l~~~Leql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~~~ 423 (629)
.+....|..-..-.+.|+.-.+.+...+..++.+++.|+....
T Consensus 133 ~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~aA~ 175 (188)
T PF05335_consen 133 EGAQQELAEKTQLLEAAKRRVEELQRQLQAARADYEKTKKAAY 175 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445455556667777777777888888888888776544
No 113
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=37.97 E-value=1.1e+02 Score=24.83 Aligned_cols=36 Identities=14% Similarity=0.316 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006830 311 AAIKEEGFRFMASMDVIRNELRHVREETARLKKGEE 346 (629)
Q Consensus 311 ~~~~~E~~~l~~~vesLr~ELe~~K~el~~lke~e~ 346 (629)
+++-.++..+...+.+++.+++..+..+..+.+...
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk 38 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEISESVEKIEENVK 38 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556677777777777777777777777776554
No 114
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=37.90 E-value=3.2e+02 Score=27.07 Aligned_cols=43 Identities=16% Similarity=0.255 Sum_probs=2.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006830 299 VKEELEAAKKELAAIKEEGFRFMASMDVIRNELRHVREETARL 341 (629)
Q Consensus 299 ~~~eL~~AK~~L~~~~~E~~~l~~~vesLr~ELe~~K~el~~l 341 (629)
+..||.++...-.....-+..+...+..|+.++......+..+
T Consensus 79 l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l 121 (194)
T PF08614_consen 79 LQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAEL 121 (194)
T ss_dssp -----------------------------------HHHHHHHH
T ss_pred ccccccccccccccccccccccccccchhhhhHHHHHHHHHHH
Confidence 3445555444444433334444444444444443333333333
No 115
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=37.67 E-value=2.4e+02 Score=27.94 Aligned_cols=106 Identities=17% Similarity=0.224 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHH
Q 006830 318 FRFMASMDVIRNELRHVREETARLKKGEEKTELTVQNLNSKLLRAKAKLEAVSAAEEKANGIAGNLAFTLEQLKTEAEAA 397 (629)
Q Consensus 318 ~~l~~~vesLr~ELe~~K~el~~lke~e~~a~~~v~sL~~EL~k~kseLe~~~~~Eek~~~~~~~l~~~Leql~~Eae~A 397 (629)
..+-..+..|+.||.........+..++......+..|..++......|.. +...+.++..+...-
T Consensus 70 ~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~--------------l~~~~~~L~~~~~~l 135 (194)
T PF08614_consen 70 SSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAE--------------LEAELAQLEEKIKDL 135 (194)
T ss_dssp --------------------------------------------HHHHHHH--------------HHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHH--------------HHHHHHHHHHHHHHH
Confidence 334444555555555555555555554444444444444443333333222 233333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006830 398 KKEKELVTEETAKIKEEIQKTEAEIYSAEEKIETSMQELN 437 (629)
Q Consensus 398 k~ea~~~~~E~~~~k~E~e~~ka~~~t~E~rL~aa~kE~E 437 (629)
..+......-+..++.|+......+..+|.++....+|..
T Consensus 136 ~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~ 175 (194)
T PF08614_consen 136 EEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENR 175 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344555566666666677777777776666554
No 116
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=37.20 E-value=4.1e+02 Score=26.00 Aligned_cols=15 Identities=27% Similarity=0.446 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHH
Q 006830 407 ETAKIKEEIQKTEAE 421 (629)
Q Consensus 407 E~~~~k~E~e~~ka~ 421 (629)
++..++.++|.+|..
T Consensus 139 ei~~lr~~iE~~K~~ 153 (177)
T PF07798_consen 139 EIANLRTEIESLKWD 153 (177)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444555555555544
No 117
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=36.82 E-value=5.6e+02 Score=27.61 Aligned_cols=69 Identities=25% Similarity=0.259 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHH
Q 006830 387 LEQLKTEAEAAKKEKELVTEETAKIKEEIQKTEAEIYSAEEKIETSMQELNAVKSSEALAFDNLKSLIE 455 (629)
Q Consensus 387 Leql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~~~t~E~rL~aa~kE~EAakasE~lAla~ikaL~e 455 (629)
|..+..+-+....+...++.+...+..+-++.-.........+.....+.+..++-=..+...+..|..
T Consensus 66 L~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 66 LEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333333444445555555555555556666666666666666666666666667776654
No 118
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=36.68 E-value=3.7e+02 Score=25.33 Aligned_cols=81 Identities=19% Similarity=0.308 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHH
Q 006830 319 RFMASMDVIRNELRHVREETARLKKGEEKTELTVQNLNSKLLRAKAKLEAVSAAEEKANGIAGNLAFTLEQLKTEAEAAK 398 (629)
Q Consensus 319 ~l~~~vesLr~ELe~~K~el~~lke~e~~a~~~v~sL~~EL~k~kseLe~~~~~Eek~~~~~~~l~~~Leql~~Eae~Ak 398 (629)
.|..++.++-..|+++-..+..+|.... ..|..|-. .|++...=....+
T Consensus 40 ~m~~A~~~v~kql~~vs~~l~~tKkhLs---qRId~vd~----------------------------klDe~~ei~~~i~ 88 (126)
T PF07889_consen 40 SMSDAVASVSKQLEQVSESLSSTKKHLS---QRIDRVDD----------------------------KLDEQKEISKQIK 88 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHh----------------------------hHHHHHHHHHHHH
Confidence 4567888888888888888888875333 22222222 2222222222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006830 399 KEKELVTEETAKIKEEIQKTEAEIYSAEEKIE 430 (629)
Q Consensus 399 ~ea~~~~~E~~~~k~E~e~~ka~~~t~E~rL~ 430 (629)
.+...++..+..+..++...+..+.+.+.+|-
T Consensus 89 ~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~ 120 (126)
T PF07889_consen 89 DEVTEVREDVSQIGDDVDSVQQMVEGLEGKID 120 (126)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666666777777777777776663
No 119
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=36.31 E-value=6.9e+02 Score=28.40 Aligned_cols=31 Identities=16% Similarity=0.093 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006830 411 IKEEIQKTEAEIYSAEEKIETSMQELNAVKS 441 (629)
Q Consensus 411 ~k~E~e~~ka~~~t~E~rL~aa~kE~EAaka 441 (629)
.-.+.+.......-|+..+.+|+.-+|.|+.
T Consensus 349 ~laeYe~L~le~efAe~~y~sAlaaLE~AR~ 379 (434)
T PRK15178 349 SLSLFEDLRLQSEIAKARWESALQTLQQGKL 379 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666677777777776666654
No 120
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=36.27 E-value=5.9e+02 Score=27.55 Aligned_cols=44 Identities=16% Similarity=0.301 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHHHH
Q 006830 323 SMDVIRNELRHVREETARLKKGEEKTELTVQNLNSKLLRAKAKL 366 (629)
Q Consensus 323 ~vesLr~ELe~~K~el~~lke~e~~a~~~v~sL~~EL~k~kseL 366 (629)
.+..|+.++...+.++..++..-....-.|..|..++..++..|
T Consensus 215 ~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~l~~~i 258 (362)
T TIGR01010 215 LISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIKSLRKQI 258 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHH
Confidence 34444445555555554444433333344444444444444443
No 121
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.28 E-value=7.9e+02 Score=28.78 Aligned_cols=58 Identities=28% Similarity=0.307 Sum_probs=38.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHhhc
Q 006830 195 ARIEALKEYGEIEAEREKEANEFSASMEVAKEKLKDLTEEIDHCKELENKLAVTLYDVNFLHNELKS 261 (629)
Q Consensus 195 a~i~a~~e~~~i~a~~e~~~~~~~~~le~ae~el~~Lk~el~~~k~Le~kL~ets~~ie~Lq~El~~ 261 (629)
+.|+-++++ ++.+-.+-..++++-+++.++|+..++..+. .|.++.+.+-.|++++..
T Consensus 313 r~IerLkeq------r~rderE~~EeIe~~~ke~kdLkEkv~~lq~---~l~eke~sl~dlkehass 370 (654)
T KOG4809|consen 313 RIIERLKEQ------RERDERERLEEIESFRKENKDLKEKVNALQA---ELTEKESSLIDLKEHASS 370 (654)
T ss_pred HHHHHhcch------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 557666664 5555445566777888888888877765444 566667777777776654
No 122
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=35.19 E-value=7.9e+02 Score=28.72 Aligned_cols=192 Identities=21% Similarity=0.277 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHHHHhhHhHHH--HHHHHHHHHHHHHHHhhchh-hhhhhhhcCCCcccccccccccccccCCCCCCchh
Q 006830 222 EVAKEKLKDLTEEIDHCKELEN--KLAVTLYDVNFLHNELKSVK-DKDKLVQGNDSLKGTHSIYQSGEELEGSPLLPSKS 298 (629)
Q Consensus 222 e~ae~el~~Lk~el~~~k~Le~--kL~ets~~ie~Lq~El~~ak-~~e~~~~~~~s~~~~~~~~~~~~~~e~~~~~~~~~ 298 (629)
-+.+++++.|+.++.....+=. .|+.+...+..++..+...= -.|..|.-.-.+ .+.. ..
T Consensus 251 ~~id~~~~~L~~~l~~~~~~l~~Leld~aeeel~~I~e~ie~lYd~lE~EveA~~~V------------~~~~-----~~ 313 (570)
T COG4477 251 VNIDSRLERLKEQLVENSELLTQLELDEAEEELGLIQEKIESLYDLLEREVEAKNVV------------EENL-----PI 313 (570)
T ss_pred ccHHHHHHHHHHHHHHHHhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HhcC-----cc
Confidence 4688899999999874444322 46888999999998887521 111111000000 0011 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHhhhhhhhhhHhhHHHHHHHHHHHHHH
Q 006830 299 VKEELEAAKKELAAIKEEGFRFMASMDVIRNELRHVREE----------TARLKKGEEKTELTVQNLNSKLLRAKAKLEA 368 (629)
Q Consensus 299 ~~~eL~~AK~~L~~~~~E~~~l~~~vesLr~ELe~~K~e----------l~~lke~e~~a~~~v~sL~~EL~k~kseLe~ 368 (629)
+..-|.-+|.+..-++.|+..++.++----.++-.++.. +..+..........-+.|...|.....-|..
T Consensus 314 l~~~l~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~ 393 (570)
T COG4477 314 LPDYLEKAKENNEHLKEEIERVKESYRLAETELGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTD 393 (570)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHH
Confidence 567788888888888888888876554444444444444 4444333333334446666666666666666
Q ss_pred HHHHHHHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHH
Q 006830 369 VSAAEEKANGIAGNLAFTLEQLKTEAEAAKKEKELVTEETAKIKEEIQKTE---------AEIYSAEEKIETSMQELN 437 (629)
Q Consensus 369 ~~~~Eek~~~~~~~l~~~Leql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~k---------a~~~t~E~rL~aa~kE~E 437 (629)
+..... ++...|.++..+=-+|+..+..++..+...+.=.+... ..+.|+..+++.+.+++.
T Consensus 394 i~~~q~-------~~~e~L~~LrkdEl~Are~l~~~~~~l~eikR~mek~nLPGlPe~~l~l~~~~~~~i~~l~~eLs 464 (570)
T COG4477 394 IEDEQE-------KVQEHLTSLRKDELEARENLERLKSKLHEIKRYMEKSNLPGLPETFLSLFFTAGHEIQDLMKELS 464 (570)
T ss_pred HhhhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhhhhHHHHHHHHHh
Confidence 555443 34556777776666666666666666555554443221 234455555555555443
No 123
>COG5420 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=35.11 E-value=1.6e+02 Score=24.55 Aligned_cols=18 Identities=44% Similarity=0.628 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006830 127 AEVMRELESVKQELSKLK 144 (629)
Q Consensus 127 a~~~~EL~svk~EL~kl~ 144 (629)
-.+.+|||.+|+||-++.
T Consensus 51 ~~~yaeLD~~k~ELakle 68 (71)
T COG5420 51 FEAYAELDAAKRELAKLE 68 (71)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 367899999999998875
No 124
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=34.95 E-value=13 Score=44.42 Aligned_cols=32 Identities=31% Similarity=0.576 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006830 124 HRYAEVMRELESVKQELSKLKLDMASVLEEKS 155 (629)
Q Consensus 124 ~qya~~~~EL~svk~EL~kl~~e~~~~~eek~ 155 (629)
..|..=+.++.-.+..+..|+.+....++-+.
T Consensus 318 e~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~ 349 (713)
T PF05622_consen 318 EKYKKKLEDLEDLKRQVKELEEDNAVLLETKA 349 (713)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777777777777776666654
No 125
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=34.67 E-value=3.1e+02 Score=32.91 Aligned_cols=40 Identities=33% Similarity=0.377 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHh
Q 006830 414 EIQKTEAEIYSAEEKIETSMQELNAVKSSEALAFDNLKSLIEK 456 (629)
Q Consensus 414 E~e~~ka~~~t~E~rL~aa~kE~EAakasE~lAla~ikaL~e~ 456 (629)
++...+..+..++.|..- +|++=..|..|-+ ..+-.|-++
T Consensus 607 e~~~l~~~~~~~ekr~~R-Lkevf~~ks~eFr--~av~~llGy 646 (722)
T PF05557_consen 607 EIAELKAELASAEKRNQR-LKEVFKAKSQEFR--EAVYSLLGY 646 (722)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH--HHHHHHHSE
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH--HHHHHHhcc
Confidence 344455555555555443 3455566666643 244455444
No 126
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=34.35 E-value=9.2e+02 Score=29.25 Aligned_cols=51 Identities=16% Similarity=0.190 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHh
Q 006830 406 EETAKIKEEIQKTEAEIYSAEEKIETSMQELNAVKSSEALAFDNLKSLIEK 456 (629)
Q Consensus 406 ~E~~~~k~E~e~~ka~~~t~E~rL~aa~kE~EAakasE~lAla~ikaL~e~ 456 (629)
..+..+.......+..+...+..|.++....-.+..+=..|-++|-.+++.
T Consensus 405 ekl~~lek~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEe 455 (717)
T PF09730_consen 405 EKLMSLEKSSREDQERISELEKELRALSKLAGESQGSLNSAQDELVTFSEE 455 (717)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 333333333344444555555555555555555544445555555555543
No 127
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=34.25 E-value=7.7e+02 Score=28.34 Aligned_cols=198 Identities=19% Similarity=0.246 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 006830 128 EVMRELESVKQELSKLKLDMASVLEEKSRAEKEIEASSLKMRSNSSSVEGLRKEIEEVNEEQVLVELARIEALKEYGEIE 207 (629)
Q Consensus 128 ~~~~EL~svk~EL~kl~~e~~~~~eek~~A~~~a~ea~~~a~~~~~~~~~l~kei~~~~e~~~~~ela~i~a~~e~~~i~ 207 (629)
..-.+|..+.+|+..++..+..+-.++..++.-.. ....+. ..++..|...+..+..++..-.-..+.+...+..-.
T Consensus 113 ~lk~~l~e~~~El~~l~~~l~~l~~~~~~~~~~~~-~~~~l~--~~~~~sL~ekl~lld~al~~~~~~~~~~~~~fl~rt 189 (511)
T PF09787_consen 113 VLKIRLQELDQELRRLRRQLEELQNEKSRILSDES-TVSRLQ--NGAPRSLQEKLSLLDEALKREDGNAITAVVEFLKRT 189 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhH-HHHHHH--HHHHhhHHHHHHHHHHHHHhcCccHHHHHHHHHHHH
Confidence 33455677777777777777776555544433221 222221 133345555554444333221111122222221111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHhhchhhhhhh-hhcCCCc-ccccc-cccc
Q 006830 208 AEREKEANEFSASMEVAKEKLKDLTEEIDHCKELENKLAVTLYDVNFLHNELKSVKDKDKL-VQGNDSL-KGTHS-IYQS 284 (629)
Q Consensus 208 a~~e~~~~~~~~~le~ae~el~~Lk~el~~~k~Le~kL~ets~~ie~Lq~El~~ak~~e~~-~~~~~s~-~~~~~-~~~~ 284 (629)
...+. +...|.+.-.-+..+-..+-...++...+.-........+.+|...|.-... .+..+.. ..|.. ....
T Consensus 190 l~~e~----~~~~L~~~~~A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~ 265 (511)
T PF09787_consen 190 LKKEI----ERQELEERPKALRHYIEYLRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEE 265 (511)
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhccccc
Confidence 12211 2222222222223333344456666666666666666666666665511111 1110000 00000 0000
Q ss_pred cccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006830 285 GEELEGSPLLPSKSVKEELEAAKKELAAIKEEGFRFMASMDVIRNELRHVREETAR 340 (629)
Q Consensus 285 ~~~~e~~~~~~~~~~~~eL~~AK~~L~~~~~E~~~l~~~vesLr~ELe~~K~el~~ 340 (629)
.. +... ..+||++.+.+.+-+++++..+..-+..|+.|+......+..
T Consensus 266 --~~-~~~~-----~~~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~ 313 (511)
T PF09787_consen 266 --GF-DSST-----NSIELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEG 313 (511)
T ss_pred --cc-cccc-----chhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00 1111 127788888888888888877777777777777555554433
No 128
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=34.15 E-value=4.9e+02 Score=25.97 Aligned_cols=28 Identities=21% Similarity=0.337 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006830 297 KSVKEELEAAKKELAAIKEEGFRFMASM 324 (629)
Q Consensus 297 ~~~~~eL~~AK~~L~~~~~E~~~l~~~v 324 (629)
..+..++..++..++.-+++++.|..-+
T Consensus 138 ~~~~~~~~~~~~~anrwTDNI~~l~~~~ 165 (188)
T PF03962_consen 138 EKLKEEIKIAKEAANRWTDNIFSLKSYL 165 (188)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 5567777777777777777777776554
No 129
>PRK10884 SH3 domain-containing protein; Provisional
Probab=33.96 E-value=5.2e+02 Score=26.26 Aligned_cols=25 Identities=0% Similarity=0.124 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006830 299 VKEELEAAKKELAAIKEEGFRFMAS 323 (629)
Q Consensus 299 ~~~eL~~AK~~L~~~~~E~~~l~~~ 323 (629)
+...|...+.+|..+++++..+...
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3444555555555555554444433
No 130
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=33.75 E-value=7.7e+02 Score=28.17 Aligned_cols=42 Identities=12% Similarity=0.235 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hhHhHHHHHHHHHHHHHH
Q 006830 213 EANEFSASMEVAKEKLKDLTEEID-HCKELENKLAVTLYDVNF 254 (629)
Q Consensus 213 ~~~~~~~~le~ae~el~~Lk~el~-~~k~Le~kL~ets~~ie~ 254 (629)
....|...++..++.....+...+ ...||+.+|--.+..|+.
T Consensus 411 nq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~le~ 453 (493)
T KOG0804|consen 411 NQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMFFLEA 453 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHheehhh
Confidence 345577777777777777666664 777888887776666655
No 131
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=33.24 E-value=4e+02 Score=24.78 Aligned_cols=45 Identities=11% Similarity=0.174 Sum_probs=38.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006830 40 SSRARELHMARRDISRYKESRKAAESVKAQAESELSTARKTVKDL 84 (629)
Q Consensus 40 ~~~e~eL~~aq~el~k~Keql~~aE~~K~qal~ELe~akr~ieeL 84 (629)
.-+..+|....-++.-++.++...+..|..+-.||-..-...+++
T Consensus 19 e~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 19 ERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL 63 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345688899999999999999999999999999998877666666
No 132
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.86 E-value=6.2e+02 Score=26.85 Aligned_cols=42 Identities=21% Similarity=0.188 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHH-hhHhHHHHHHHHHHHHHHHHHHh
Q 006830 218 SASMEVAKEKLKDLTEEID-HCKELENKLAVTLYDVNFLHNEL 259 (629)
Q Consensus 218 ~~~le~ae~el~~Lk~el~-~~k~Le~kL~ets~~ie~Lq~El 259 (629)
+..++...+.|..|..+++ ...+|+.+..+....|..|....
T Consensus 164 q~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa~~ 206 (265)
T COG3883 164 QAALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAAKE 206 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666667765 66777777777777777766654
No 133
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=32.80 E-value=6.6e+02 Score=27.15 Aligned_cols=19 Identities=11% Similarity=0.216 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 006830 299 VKEELEAAKKELAAIKEEG 317 (629)
Q Consensus 299 ~~~eL~~AK~~L~~~~~E~ 317 (629)
+..+|......+..+..+.
T Consensus 79 ~~~~l~~l~~~~~~l~a~~ 97 (423)
T TIGR01843 79 VEADAAELESQVLRLEAEV 97 (423)
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 3455555555555554443
No 134
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=31.71 E-value=5.7e+02 Score=26.06 Aligned_cols=133 Identities=18% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHH
Q 006830 302 ELEAAKKELAAIKEE--------GFRFMASMDVIRNELRHVREETARLKKGEEKTELTVQNLNSKLLRAKAKLEAVSAAE 373 (629)
Q Consensus 302 eL~~AK~~L~~~~~E--------~~~l~~~vesLr~ELe~~K~el~~lke~e~~a~~~v~sL~~EL~k~kseLe~~~~~E 373 (629)
+|......+..+.++ +............++.++..+...+.........+.+.|.....+.+.-+...+.-|
T Consensus 34 e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NE 113 (207)
T PF05010_consen 34 ELHKENQEMRKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNE 113 (207)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhH
Q ss_pred HHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006830 374 EKANGIAGNLAFTLEQLKTEAEAAKKEKELVTEETAKIKEEIQKTEAEIYSAEEKIETSMQELN 437 (629)
Q Consensus 374 ek~~~~~~~l~~~Leql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~~~t~E~rL~aa~kE~E 437 (629)
+..+..+.++...|.+...-...-|..++ +.+..+..+|.+.+.....=-..|++.++-.+
T Consensus 114 E~Lkk~~~ey~~~l~~~eqry~aLK~hAe---ekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e 174 (207)
T PF05010_consen 114 ETLKKCIEEYEERLKKEEQRYQALKAHAE---EKLEKANEEIAQVRSKHQAELLALQASLKKEE 174 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
No 135
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=31.46 E-value=3e+02 Score=22.70 Aligned_cols=43 Identities=19% Similarity=0.291 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006830 43 ARELHMARRDISRYKESRKAAESVKAQAESELSTARKTVKDLA 85 (629)
Q Consensus 43 e~eL~~aq~el~k~Keql~~aE~~K~qal~ELe~akr~ieeL~ 85 (629)
+.+|.+++..--.+..+|..++.-......+++.-++-++++.
T Consensus 17 ~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 17 QEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566666666666667777777777777777777777666654
No 136
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=31.21 E-value=1.3e+03 Score=29.86 Aligned_cols=45 Identities=20% Similarity=0.279 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHHHHHHHHH
Q 006830 327 IRNELRHVREETARLKKGEEKTELTVQNLNSKLLRAKAKLEAVSA 371 (629)
Q Consensus 327 Lr~ELe~~K~el~~lke~e~~a~~~v~sL~~EL~k~kseLe~~~~ 371 (629)
++.+++..+.....+.+........|++|++.+.....++.-+..
T Consensus 607 ~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~e 651 (1317)
T KOG0612|consen 607 LRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEE 651 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHH
Confidence 344444444444444444455555666666666655555554443
No 137
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=31.20 E-value=5.8e+02 Score=25.96 Aligned_cols=51 Identities=18% Similarity=0.165 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HhhHhHHHHHHHHHHHHHHHHHHhhchhhhh
Q 006830 216 EFSASMEVAKEKLKDLTEEI----DHCKELENKLAVTLYDVNFLHNELKSVKDKD 266 (629)
Q Consensus 216 ~~~~~le~ae~el~~Lk~el----~~~k~Le~kL~ets~~ie~Lq~El~~ak~~e 266 (629)
.|+.-+.-+..+|..+-+.- ...+.|++...--...++.+..+|+.|+.+.
T Consensus 22 ~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~ia 76 (205)
T KOG1003|consen 22 RAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIA 76 (205)
T ss_pred HHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 34444444444444333332 2445555555555555555666666555553
No 138
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=31.10 E-value=6.9e+02 Score=29.64 Aligned_cols=20 Identities=15% Similarity=0.165 Sum_probs=15.7
Q ss_pred ccccccchhhhhhhhcCCCC
Q 006830 7 DYQRRTGSVKAAGNMYGGSP 26 (629)
Q Consensus 7 DT~aP~eSVK~Avs~FG~~~ 26 (629)
|-++|=++|+-=...||-..
T Consensus 296 DVtp~P~~V~KiAasf~A~l 315 (652)
T COG2433 296 DVTPAPETVKKIAASFNAVL 315 (652)
T ss_pred cCCCChHHHHHHHHHcCCcc
Confidence 65666689988888898776
No 139
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=31.03 E-value=4e+02 Score=28.29 Aligned_cols=55 Identities=13% Similarity=0.343 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHH
Q 006830 319 RFMASMDVIRNELRHVREETARLKKGEEKTELTVQNLNSKLLRAKAKLEAVSAAE 373 (629)
Q Consensus 319 ~l~~~vesLr~ELe~~K~el~~lke~e~~a~~~v~sL~~EL~k~kseLe~~~~~E 373 (629)
+++.++..+..++...+..+..+...+......|..-..||.+....|.+++..-
T Consensus 166 ~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vR 220 (267)
T PF10234_consen 166 ALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVR 220 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4556666677777777788888877777777788888888888888888877744
No 140
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=30.33 E-value=7e+02 Score=26.67 Aligned_cols=72 Identities=17% Similarity=0.213 Sum_probs=44.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHHHHHH
Q 006830 297 KSVKEELEAAKKELAAIKEEGFRFMASMDVIRNELRHVREETARLKKGEEKTELTVQNLNSKLLRAKAKLEA 368 (629)
Q Consensus 297 ~~~~~eL~~AK~~L~~~~~E~~~l~~~vesLr~ELe~~K~el~~lke~e~~a~~~v~sL~~EL~k~kseLe~ 368 (629)
.++...|.-.|...+..+.++..|..---+|...++..-.....|-......+..|+.|+..|+.++-.|+.
T Consensus 42 eSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~ 113 (307)
T PF10481_consen 42 ESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEK 113 (307)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666666555555555555444444555555556667888888888877665544
No 141
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=30.18 E-value=2.5e+02 Score=27.61 Aligned_cols=51 Identities=18% Similarity=0.229 Sum_probs=26.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 006830 40 SSRARELHMARRDISRYKESRKAAESVKAQA-ESELSTARKTVKDLACRIEK 90 (629)
Q Consensus 40 ~~~e~eL~~aq~el~k~Keql~~aE~~K~qa-l~ELe~akr~ieeL~~kLe~ 90 (629)
..+..+|...++.+...+.|...+.....+. ..+....+..+++|+.+|+.
T Consensus 121 ~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~ 172 (192)
T PF05529_consen 121 HSLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEK 172 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 3444566666666666666665544333332 23444445555555555554
No 142
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=29.84 E-value=4.6e+02 Score=24.40 Aligned_cols=43 Identities=33% Similarity=0.449 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006830 299 VKEELEAAKKELAAIKEEGFRFMASMDVIRNELRHVREETARL 341 (629)
Q Consensus 299 ~~~eL~~AK~~L~~~~~E~~~l~~~vesLr~ELe~~K~el~~l 341 (629)
+...|..--.++..++.++..+...=+.|+.||-+.-.+.+.+
T Consensus 21 L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 21 LQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL 63 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555555555555554444444433
No 143
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=29.56 E-value=1e+03 Score=28.29 Aligned_cols=50 Identities=10% Similarity=0.318 Sum_probs=34.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006830 297 KSVKEELEAAKKELAAIKEEGFRFMASMDVIRNELRHVREETARLKKGEE 346 (629)
Q Consensus 297 ~~~~~eL~~AK~~L~~~~~E~~~l~~~vesLr~ELe~~K~el~~lke~e~ 346 (629)
......+..-...+++...+...|..-++-|+.++++.+.++++++..+.
T Consensus 418 ~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~ 467 (652)
T COG2433 418 TVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR 467 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777777777777777777777777777777777776665443
No 144
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=29.37 E-value=5e+02 Score=24.69 Aligned_cols=53 Identities=15% Similarity=0.189 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 006830 298 SVKEELEAAKKELAAIKEEGFRFMASMDVIRNELRHVREETARLKKGEEKTEL 350 (629)
Q Consensus 298 ~~~~eL~~AK~~L~~~~~E~~~l~~~vesLr~ELe~~K~el~~lke~e~~a~~ 350 (629)
.+...+.+....+...-.++.+|..-+..|-.+|+++...+..++........
T Consensus 18 ~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~ 70 (143)
T PF12718_consen 18 ELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEK 70 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 34555666666666666778888888888888888888888887776654443
No 145
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=28.31 E-value=5.1e+02 Score=24.40 Aligned_cols=43 Identities=30% Similarity=0.498 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006830 300 KEELEAAKKELAAIKEEGFRFMASMDVIRNELRHVREETARLK 342 (629)
Q Consensus 300 ~~eL~~AK~~L~~~~~E~~~l~~~vesLr~ELe~~K~el~~lk 342 (629)
+..++.+...+..+......+...+.++..-+...+.++..++
T Consensus 79 ~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk 121 (151)
T PF11559_consen 79 KEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLK 121 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444443
No 146
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=27.57 E-value=7.2e+02 Score=25.91 Aligned_cols=53 Identities=25% Similarity=0.226 Sum_probs=45.4
Q ss_pred HhhHHHHhhHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006830 476 FEYEYLRGRAVGAEELADKKVAAAQAWIEALKASEKEILMKMEMAHREIRHTR 528 (629)
Q Consensus 476 eEye~L~~ka~eaEe~a~kkvaaA~aqve~akasE~e~l~kLe~~~~ei~~~k 528 (629)
-.|+.+.-+...-=+....+|..-..+|..+|..=..+|..||.+..+|-+.|
T Consensus 173 rPYfe~K~~~~~~l~~~k~~v~~Le~~v~~aK~~Y~~ALrnLE~ISeeIH~~R 225 (239)
T PF05276_consen 173 RPYFELKAKFNQQLEEQKEKVEELEAKVKQAKSRYSEALRNLEQISEEIHEQR 225 (239)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888888876666667899999999999999999999999999999998554
No 147
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=27.27 E-value=1.1e+03 Score=27.91 Aligned_cols=72 Identities=24% Similarity=0.257 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH
Q 006830 353 QNLNSKLLRAKAKLEAVSAAEEKANGIAGNLAFTLEQLKTEAEAAKKEK--------------ELVTEETAKIKEEIQKT 418 (629)
Q Consensus 353 ~sL~~EL~k~kseLe~~~~~Eek~~~~~~~l~~~Leql~~Eae~Ak~ea--------------~~~~~E~~~~k~E~e~~ 418 (629)
-.|..|-.-++-+|++++.+..+..+.+..+-..|..++.|+..|++++ .+++-|..+.--|--+-
T Consensus 332 DeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~~~~~~e~ddiPmAqRkRFTRvEMaRVLMeRNqY 411 (832)
T KOG2077|consen 332 DELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQKAKDDEDDDIPMAQRKRFTRVEMARVLMERNQY 411 (832)
T ss_pred HhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHhhhHHHHHHHHHHHHhHH
Confidence 3334444444444444444443333334444444444444444443321 23555655555555555
Q ss_pred HHHHHH
Q 006830 419 EAEIYS 424 (629)
Q Consensus 419 ka~~~t 424 (629)
|-.++.
T Consensus 412 KErLME 417 (832)
T KOG2077|consen 412 KERLME 417 (832)
T ss_pred HHHHHH
Confidence 555543
No 148
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=27.22 E-value=1.2e+03 Score=28.43 Aligned_cols=43 Identities=33% Similarity=0.361 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006830 301 EELEAAKKELAAIKEEGFRFMASMDVIRNELRHVREETARLKK 343 (629)
Q Consensus 301 ~eL~~AK~~L~~~~~E~~~l~~~vesLr~ELe~~K~el~~lke 343 (629)
.=++.|+.-|..-..+...+...++..+.+++..+.++..++.
T Consensus 502 ~ii~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~ 544 (782)
T PRK00409 502 NIIEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLK 544 (782)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3367788887776666667777777777777766666666654
No 149
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=26.51 E-value=1.3e+03 Score=28.61 Aligned_cols=225 Identities=15% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHhhhchhhhhhhhhhhhhhHHHHHHHHHHH
Q 006830 56 YKESRKAAESVKAQAESELSTARKTVKDLACRIEKTNHQAIPSMRYVERLEKSSGIEENVLAERSRESHRYAEVMRELES 135 (629)
Q Consensus 56 ~Keql~~aE~~K~qal~ELe~akr~ieeL~~kLe~a~~~~~~~~~ele~~r~~e~~~~~~~~~~~~e~~qya~~~~EL~s 135 (629)
|..-...-+..+.+.-.....+++.+.-++..+..-+ ......-.+.+-
T Consensus 335 ~~~~~~e~~~~~~~l~~~~~ear~~~~q~~~ql~~le-------------------------------~~~~e~q~~~qe 383 (980)
T KOG0980|consen 335 IEQLSREVAQLKAQLENLKEEARRRIEQYENQLLALE-------------------------------GELQEQQREAQE 383 (980)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH-------------------------------HHHHHhHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 006830 136 VKQELSKLKLDMASVLEEKSRAEKEIEASSLKMRSNSSSVEGLRKEIEEVNEEQVLVELARIEALKEYGEIEAEREKEAN 215 (629)
Q Consensus 136 vk~EL~kl~~e~~~~~eek~~A~~~a~ea~~~a~~~~~~~~~l~kei~~~~e~~~~~ela~i~a~~e~~~i~a~~e~~~~ 215 (629)
...|-++|+.+++- .++...+-+.+....+....+.-...+.+..+.+-+-.....+...+.-+.+|.-+.+..
T Consensus 384 ~~~e~eqLr~elaq----l~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~-- 457 (980)
T KOG0980|consen 384 NREEQEQLRNELAQ----LLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESA-- 457 (980)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----hhHhHHHHHHHHHHHHHHHHHHhhchhhhhhhhhcCCCcccccccccccccccCC
Q 006830 216 EFSASMEVAKEKLKDLTEEID----HCKELENKLAVTLYDVNFLHNELKSVKDKDKLVQGNDSLKGTHSIYQSGEELEGS 291 (629)
Q Consensus 216 ~~~~~le~ae~el~~Lk~el~----~~k~Le~kL~ets~~ie~Lq~El~~ak~~e~~~~~~~s~~~~~~~~~~~~~~e~~ 291 (629)
...+...+++...|++.++ ....++.|...-.-.++.|+.|+
T Consensus 458 --~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El-------------------------------- 503 (980)
T KOG0980|consen 458 --EQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQEL-------------------------------- 503 (980)
T ss_pred --HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH--------------------------------
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhHH
Q 006830 292 PLLPSKSVKEELEAAKKELAAIKEE----GFRFMASMDVIRNELRHVREETARLKKGEEKTELTVQNLN 356 (629)
Q Consensus 292 ~~~~~~~~~~eL~~AK~~L~~~~~E----~~~l~~~vesLr~ELe~~K~el~~lke~e~~a~~~v~sL~ 356 (629)
..+..+++....+|...... ...|......--.++..+.....+....-..+...|.+|.
T Consensus 504 -----~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~~~~~~~e~~~~~~e~e~si~ql~ 567 (980)
T KOG0980|consen 504 -----ALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAELVAREEEREALRLEAERSINQLE 567 (980)
T ss_pred -----HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhh
No 150
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=26.26 E-value=6.1e+02 Score=24.63 Aligned_cols=57 Identities=19% Similarity=0.331 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhHHHH
Q 006830 302 ELEAAKKELAAIKEEGFRFMASMDVIRNELRHVREETARLKKGEEKTELTVQNLNSK 358 (629)
Q Consensus 302 eL~~AK~~L~~~~~E~~~l~~~vesLr~ELe~~K~el~~lke~e~~a~~~v~sL~~E 358 (629)
++...+..|.....+...+..-...+..++...+.....+++........+.++...
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~ 138 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDES 138 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 566666666666667777777777777777766666666664433333333333333
No 151
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=26.13 E-value=1.4e+03 Score=28.85 Aligned_cols=114 Identities=19% Similarity=0.182 Sum_probs=79.0
Q ss_pred cccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhh---HHHHHH
Q 006830 30 KSHLDIPESSSSRARELHMARRDISRYKESRKAAESVKAQAESELSTARKTVKDLACRIEKTNHQAIPSMR---YVERLE 106 (629)
Q Consensus 30 k~~~~~~e~~~~~e~eL~~aq~el~k~Keql~~aE~~K~qal~ELe~akr~ieeL~~kLe~a~~~~~~~~~---ele~~r 106 (629)
+|...+..+.+.+..+|..+.+-|..+..+++..=.--.+.-+||+-.+.-++-|......-...+.+++. ++.+++
T Consensus 163 sp~~~~~~~~~hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalr 242 (1195)
T KOG4643|consen 163 SPYDIVVKKNLHLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALR 242 (1195)
T ss_pred CcchhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 45444446778888999999999999988888555445556666666666666666666666555544333 333332
Q ss_pred hhhchhhhhhhhhhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006830 107 KSSGIEENVLAERSRE--SHRYAEVMRELESVKQELSKLKLDMASVLEEKS 155 (629)
Q Consensus 107 ~~e~~~~~~~~~~~~e--~~qya~~~~EL~svk~EL~kl~~e~~~~~eek~ 155 (629)
. ..+ .-.|...+-+++-+|.=+..++++-..++++|.
T Consensus 243 e------------~aer~d~~ykerlmDs~fykdRveelkedN~vLleeke 281 (1195)
T KOG4643|consen 243 E------------QAERPDTTYKERLMDSDFYKDRVEELKEDNRVLLEEKE 281 (1195)
T ss_pred H------------hhhcCCCccchhhhhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 1 111 267888999999999999999999988888883
No 152
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=25.77 E-value=5.7e+02 Score=24.08 Aligned_cols=9 Identities=11% Similarity=0.645 Sum_probs=4.8
Q ss_pred HHHHHHHhh
Q 006830 252 VNFLHNELK 260 (629)
Q Consensus 252 ie~Lq~El~ 260 (629)
+..|+.+|-
T Consensus 4 ~~yiN~~L~ 12 (151)
T PF11559_consen 4 IEYINQQLL 12 (151)
T ss_pred HHHHHHHHH
Confidence 345566663
No 153
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=25.47 E-value=1.5e+02 Score=32.31 Aligned_cols=119 Identities=11% Similarity=0.204 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHH
Q 006830 310 LAAIKEEGFRFMASMDVIRNELRHVREETARLKKGEEKTELTVQNLNSKLLRAKAKLEAVSAAEEKANGIAGNLAFTLEQ 389 (629)
Q Consensus 310 L~~~~~E~~~l~~~vesLr~ELe~~K~el~~lke~e~~a~~~v~sL~~EL~k~kseLe~~~~~Eek~~~~~~~l~~~Leq 389 (629)
|..+.+.+..|..++.+|+.-+-.....+..|.-........+.++..+|+.+...+..++..=......+.+|...+..
T Consensus 30 Ls~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~ 109 (326)
T PF04582_consen 30 LSPIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSD 109 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhh
Confidence 33344444444444444444444444444444444444444444444555444444444332211111123333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006830 390 LKTEAEAAKKEKELVTEETAKIKEEIQKTEAEIYSAEEK 428 (629)
Q Consensus 390 l~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~~~t~E~r 428 (629)
...-...-...-..+.-.+..+|..+-..-..|...+.|
T Consensus 110 h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~R 148 (326)
T PF04582_consen 110 HSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESR 148 (326)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHH
Confidence 333333333333334445555555555555555555554
No 154
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=25.47 E-value=1.9e+02 Score=33.09 Aligned_cols=44 Identities=11% Similarity=0.213 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHH----hhHhHHHHHHHHHHHHHHHHHHhhc
Q 006830 218 SASMEVAKEKLKDLTEEID----HCKELENKLAVTLYDVNFLHNELKS 261 (629)
Q Consensus 218 ~~~le~ae~el~~Lk~el~----~~k~Le~kL~ets~~ie~Lq~El~~ 261 (629)
+....+.+++|..|++++. ...+++.+|.+...++..|+.+++.
T Consensus 75 Q~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 75 QVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 4445566777777777764 5668899999999999999999964
No 155
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=25.45 E-value=1.2e+03 Score=27.57 Aligned_cols=41 Identities=20% Similarity=0.199 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHH-hhHhHHHHHHHHHHHHHHHHHH
Q 006830 218 SASMEVAKEKLKDLTEEID-HCKELENKLAVTLYDVNFLHNE 258 (629)
Q Consensus 218 ~~~le~ae~el~~Lk~el~-~~k~Le~kL~ets~~ie~Lq~E 258 (629)
..++....+++-.++.++. ..+.|+.++..-...+..|.--
T Consensus 352 ~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l~ 393 (581)
T KOG0995|consen 352 QSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIRRIKLG 393 (581)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555553 7777887777777776666554
No 156
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=25.22 E-value=3e+02 Score=26.54 Aligned_cols=62 Identities=24% Similarity=0.406 Sum_probs=37.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHHH
Q 006830 297 KSVKEELEAAKKELAAIKEEGFRFMASMDVIRNEL--RHVREETARLKKGEEKTELTVQNLNSKLLRAKAK 365 (629)
Q Consensus 297 ~~~~~eL~~AK~~L~~~~~E~~~l~~~vesLr~EL--e~~K~el~~lke~e~~a~~~v~sL~~EL~k~kse 365 (629)
..+..++.+-+..|..++.+...+...+.+|+..+ +.....+..|+. .+..|+..|..+++.
T Consensus 75 ~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~-------e~~~l~~kL~~l~~~ 138 (169)
T PF07106_consen 75 AELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEE-------EIEELEEKLEKLRSG 138 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHhC
Confidence 44566677777777777777777777777766665 334444444433 344555555555553
No 157
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=24.13 E-value=1.4e+03 Score=28.04 Aligned_cols=119 Identities=17% Similarity=0.231 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 006830 158 EKEIEASSLKMRSNSSSVEGLRKEIEEVNEEQVLVELARIEALKEYGEIEAEREKEANEFSASMEVAKEKLKDLTEEID- 236 (629)
Q Consensus 158 ~~~a~ea~~~a~~~~~~~~~l~kei~~~~e~~~~~ela~i~a~~e~~~i~a~~e~~~~~~~~~le~ae~el~~Lk~el~- 236 (629)
..+..++....+.-..+.++|.|-|+... .+-..|...+..-+.+|...+++++
T Consensus 440 q~ql~es~k~~e~lq~kneellk~~e~q~-------------------------~Enk~~~~~~~ekd~~l~~~kq~~d~ 494 (861)
T PF15254_consen 440 QNQLQESLKSQELLQSKNEELLKVIENQK-------------------------EENKRLRKMFQEKDQELLENKQQFDI 494 (861)
T ss_pred HHHHHHHHHhHHHHHHhHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHhhHHHHHH
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHhhchhhhhhhhhcCCCcccccccccccccccCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 006830 237 HCKELENKLAVTLYDVNFLHNELKSVKDKDKLVQGNDSLKGTHSIYQSGEELEGSPLLPSKSVKEELEAAKKELAAIKEE 316 (629)
Q Consensus 237 ~~k~Le~kL~ets~~ie~Lq~El~~ak~~e~~~~~~~s~~~~~~~~~~~~~~e~~~~~~~~~~~~eL~~AK~~L~~~~~E 316 (629)
.+..+...|.++.+.+..+|..|+.+..=- ..+...|.+--+++.++++=
T Consensus 495 e~~rik~ev~eal~~~k~~q~kLe~sekEN------------------------------~iL~itlrQrDaEi~RL~eL 544 (861)
T PF15254_consen 495 ETTRIKIEVEEALVNVKSLQFKLEASEKEN------------------------------QILGITLRQRDAEIERLREL 544 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHhhh------------------------------hHhhhHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH
Q 006830 317 GFRFMASMDVIRNEL 331 (629)
Q Consensus 317 ~~~l~~~vesLr~EL 331 (629)
...|+.+|.-|=.+|
T Consensus 545 tR~LQ~Sma~lL~dl 559 (861)
T PF15254_consen 545 TRTLQNSMAKLLSDL 559 (861)
T ss_pred HHHHHHHHHHHhhhc
No 158
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=23.77 E-value=1.4e+03 Score=27.91 Aligned_cols=42 Identities=26% Similarity=0.302 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006830 302 ELEAAKKELAAIKEEGFRFMASMDVIRNELRHVREETARLKK 343 (629)
Q Consensus 302 eL~~AK~~L~~~~~E~~~l~~~vesLr~ELe~~K~el~~lke 343 (629)
=++.|+.-+.....+...+-..++..+.+++..+.++..++.
T Consensus 498 ii~~A~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~ 539 (771)
T TIGR01069 498 IIEQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLK 539 (771)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366788877777777777777777777777666666666654
No 159
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=23.55 E-value=1.1e+03 Score=26.59 Aligned_cols=100 Identities=16% Similarity=0.209 Sum_probs=70.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHhhh--chhhhhhh
Q 006830 40 SSRARELHMARRDISRYKESRKAAESVKAQAESELSTARKTVKDLACRIEKTNHQAIPSMRYVERLEKSS--GIEENVLA 117 (629)
Q Consensus 40 ~~~e~eL~~aq~el~k~Keql~~aE~~K~qal~ELe~akr~ieeL~~kLe~a~~~~~~~~~ele~~r~~e--~~~~~~~~ 117 (629)
-++..+|..+..+|.-...+...+|+++-.|-+||..+.--=+-....+..++....++.+++..+...- ...--+.
T Consensus 77 ddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~- 155 (499)
T COG4372 77 DDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKT- 155 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3556899999999999999999999999999999999987777667777777666556666666663211 0000000
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 006830 118 ERSRESHRYAEVMRELESVKQELSKLK 144 (629)
Q Consensus 118 ~~~~e~~qya~~~~EL~svk~EL~kl~ 144 (629)
.-.+|....++++++-.+-..|+
T Consensus 156 ----l~~qr~ql~aq~qsl~a~~k~LQ 178 (499)
T COG4372 156 ----LAEQRRQLEAQAQSLQASQKQLQ 178 (499)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 12667777777777665555554
No 160
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=22.98 E-value=8e+02 Score=24.85 Aligned_cols=44 Identities=25% Similarity=0.317 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006830 47 HMARRDISRYKESRKAAESVKAQAESELSTARKTVKDLACRIEK 90 (629)
Q Consensus 47 ~~aq~el~k~Keql~~aE~~K~qal~ELe~akr~ieeL~~kLe~ 90 (629)
-.++.+..+++..++.+|-.-++.-.|+...++.+..+..-|+.
T Consensus 18 ~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~ 61 (193)
T PF14662_consen 18 QKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQK 61 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999998888888777544433
No 161
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=22.68 E-value=1.3e+03 Score=27.35 Aligned_cols=101 Identities=20% Similarity=0.250 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHHHHH----
Q 006830 326 VIRNELRHVREETARLKKGEEKTELTVQNLNSKLLRAKAKLEAVSAAEEKANGIAGNLAFTLEQLKTEAEAAKKEK---- 401 (629)
Q Consensus 326 sLr~ELe~~K~el~~lke~e~~a~~~v~sL~~EL~k~kseLe~~~~~Eek~~~~~~~l~~~Leql~~Eae~Ak~ea---- 401 (629)
-|...|......+..++++....+..+++|...-..+..-|... ....+++.++.+.-.+..
T Consensus 199 eL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy--------------~a~~q~l~~e~e~L~~q~l~Qt 264 (617)
T PF15070_consen 199 ELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQY--------------VAAYQQLASEKEELHKQLLQQT 264 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555666666666655555555555555444444444432 223455566555544432
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006830 402 ---ELVTEETAKIKEEIQKTEAEIYSAEEKIETSMQELNAVK 440 (629)
Q Consensus 402 ---~~~~~E~~~~k~E~e~~ka~~~t~E~rL~aa~kE~EAak 440 (629)
..++.+-...+..++...-.+..+..+|.++...++-.+
T Consensus 265 ql~d~lq~eE~q~~~~~E~~~~ELq~~qe~Lea~~qqNqqL~ 306 (617)
T PF15070_consen 265 QLMDRLQHEESQGKVQLEMAHQELQEAQEHLEALSQQNQQLQ 306 (617)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 122233333344455555666666666666666665544
No 162
>PRK10869 recombination and repair protein; Provisional
Probab=22.49 E-value=1.3e+03 Score=26.96 Aligned_cols=29 Identities=3% Similarity=-0.015 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006830 123 SHRYAEVMRELESVKQELSKLKLDMASVL 151 (629)
Q Consensus 123 ~~qya~~~~EL~svk~EL~kl~~e~~~~~ 151 (629)
...|..+..++..++.+|..++.......
T Consensus 156 ~~~~~~~y~~~~~~~~~l~~l~~~~~~~~ 184 (553)
T PRK10869 156 LQEMRAAYQLWHQSCRDLAQHQQQSQERA 184 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 46677777777777777777766654433
No 163
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=22.20 E-value=1.2e+03 Score=26.50 Aligned_cols=52 Identities=13% Similarity=0.330 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006830 43 ARELHMARRDISRYKESRKAAESVKAQAESELSTARKTVKDLACRIEKTNHQ 94 (629)
Q Consensus 43 e~eL~~aq~el~k~Keql~~aE~~K~qal~ELe~akr~ieeL~~kLe~a~~~ 94 (629)
..+|+.+|.||......+........+...+|...+..+..+.+.|-.+...
T Consensus 37 ~~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~ 88 (420)
T COG4942 37 DKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADD 88 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4789999999999999999999999999999999999999999999887644
No 164
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=22.07 E-value=9e+02 Score=25.09 Aligned_cols=18 Identities=6% Similarity=0.165 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHhhH
Q 006830 512 EILMKMEMAHREIRHTRV 529 (629)
Q Consensus 512 e~l~kLe~~~~ei~~~k~ 529 (629)
.+-.+|..+..+|+..|.
T Consensus 186 ~lq~QL~~L~~EL~~~kd 203 (246)
T PF00769_consen 186 RLQEQLKELKSELEQLKD 203 (246)
T ss_dssp HHHHHHHHHHHHHHTTB-
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 455677777777776663
No 165
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=21.69 E-value=9.1e+02 Score=24.99 Aligned_cols=41 Identities=22% Similarity=0.313 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006830 381 GNLAFTLEQLKTEAEAAKKEKELVTEETAKIKEEIQKTEAE 421 (629)
Q Consensus 381 ~~l~~~Leql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~ 421 (629)
..|-..+.++..+-+..+..+..+..|...++.++...+..
T Consensus 63 n~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 63 NTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777888878887788888888888888877766
No 166
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=21.60 E-value=1.4e+03 Score=27.06 Aligned_cols=25 Identities=12% Similarity=0.270 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006830 316 EGFRFMASMDVIRNELRHVREETAR 340 (629)
Q Consensus 316 E~~~l~~~vesLr~ELe~~K~el~~ 340 (629)
....+......+..+|......+..
T Consensus 392 ~~~~~~~~~~~~e~el~~l~~~l~~ 416 (650)
T TIGR03185 392 AKSQLLKELRELEEELAEVDKKIST 416 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4445555555555555555555544
No 167
>PF02063 MARCKS: MARCKS family; InterPro: IPR002101 Myristoylated alanine-rich C-kinase substrate (MARCKS) is a predominent cellular substrate for protein kinase C (PKC) that has been implicated in the regulation of brain development, macrophage activation, neuro-secretion and growth factor-dependent mitogenesis [, ]. The N-terminal glycine is the site of myristoylation, which allows effective binding of the protein to the plasma membrane, where it co-localises with PKC []. MARCKS binds calmodulin in a calcium-dependent manner; the region responsible for calcium-binding is highly basic, a domain of about 25 amino acids known as the PSD or effector domain, which also contains the PKC phosphorylation sites and has been shown to contribute to membrane binding. When not phosphorylated, the effector domain can bind to filamentous actin []. It is believed that MARCKS may be a regulated crossbridge between actin and the plasma membrane; modulation of the actin cross-linking activity by calmodulin and phosphorylation, represent a potential convergence of the calcium-calmodulin and PKC signal transduction pathways in regulation of the actin cytoskeleton. MARCKS also contains an MH2 domain of unknown function. MARCKS-related protein (MRP) is similar to MARCKS in terms of properties such as its myristoylation, phosphorylation and calmodulin-binding, and shares a high degree of sequence similarity. The two regions that show the highest similarity are the kinase C phosphorylation site domain and the N-terminal region containing the myristoylation site []. MARCKS and MRP amino acid compositions are similar, but the alanine content of the latter is lower. MARCKS proteins appear to adopt a native unfolded conformation i.e. as randomly folded chains arranged in non-classical extended conformations, in common with other substrates of PKC.; GO: 0005516 calmodulin binding; PDB: 1IWQ_B.
Probab=21.23 E-value=37 Score=35.94 Aligned_cols=21 Identities=43% Similarity=0.342 Sum_probs=4.5
Q ss_pred hhhhhccc-chhhhhh--hhccCC
Q 006830 608 TIKKKTKV-IPNFTKL--FSGKKI 628 (629)
Q Consensus 608 ~~kkkk~~-~p~~~~~--~~rk~~ 628 (629)
.+||||+| |=.-|+| ||-||+
T Consensus 132 PKKKKKrFSFKKSFKLSGfSFKKn 155 (294)
T PF02063_consen 132 PKKKKKRFSFKKSFKLSGFSFKKN 155 (294)
T ss_dssp -------TT----HHHHHHT----
T ss_pred chhhccccccccccccccceeeec
Confidence 35555566 8777777 777765
No 168
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=20.85 E-value=8.6e+02 Score=24.43 Aligned_cols=49 Identities=18% Similarity=0.257 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 006830 300 KEELEAAKKELAAIKEEGFRFMASMDVIRNELRHVREETARLKKGEEKT 348 (629)
Q Consensus 300 ~~eL~~AK~~L~~~~~E~~~l~~~vesLr~ELe~~K~el~~lke~e~~a 348 (629)
+..|..++..+..+..++..+.--.+.|...+.++..+...|..+...+
T Consensus 85 K~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~ 133 (201)
T PF13851_consen 85 KQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESA 133 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666666666666666666666666555433
No 169
>KOG3595 consensus Dyneins, heavy chain [Cytoskeleton]
Probab=20.80 E-value=2e+03 Score=28.61 Aligned_cols=52 Identities=15% Similarity=0.066 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHHHHHH
Q 006830 317 GFRFMASMDVIRNELRHVREETARLKKGEEKTELTVQNLNSKLLRAKAKLEA 368 (629)
Q Consensus 317 ~~~l~~~vesLr~ELe~~K~el~~lke~e~~a~~~v~sL~~EL~k~kseLe~ 368 (629)
+..+...+..-++++..-+.....--.+...+...|..+..+|.....+|..
T Consensus 698 i~~f~~ll~~k~~~~~~~~~r~~~gl~kl~~a~~~v~~l~~~l~~~~~el~~ 749 (1395)
T KOG3595|consen 698 IGTFKKLLKEKRSEVRLRKLRLELGLDKLKEAGEQVAGLQKELAALQPELQV 749 (1395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHHHHHHHHHHHHhhHHHHH
Confidence 4455566666677776666666666667777888889999998888888765
No 170
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=20.75 E-value=1.3e+03 Score=26.27 Aligned_cols=168 Identities=22% Similarity=0.268 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 006830 130 MRELESVKQELSKLKLDMASVLEEKSRAEKEIEASSLKMRSNSSSVEGLRKEIEEVNEEQVLVELARIEALKEYGEIEAE 209 (629)
Q Consensus 130 ~~EL~svk~EL~kl~~e~~~~~eek~~A~~~a~ea~~~a~~~~~~~~~l~kei~~~~e~~~~~ela~i~a~~e~~~i~a~ 209 (629)
..|+..++.||..|||=|..-...=. ..+..+...|..++.. .+...
T Consensus 150 ~~Ev~~LRreLavLRQl~~~~~~~~~-----------------~~i~~i~~ki~~~k~~----------------s~~~~ 196 (424)
T PF03915_consen 150 LKEVQSLRRELAVLRQLYSEFQSEVK-----------------ESISSIREKIKKVKSA----------------STNAS 196 (424)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHh----------------hcccc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHhhc--hhhhhhhhhcCCCccccccccccccc
Q 006830 210 REKEANEFSASMEVAKEKLKDLTEEIDHCKELENKLAVTLYDVNFLHNELKS--VKDKDKLVQGNDSLKGTHSIYQSGEE 287 (629)
Q Consensus 210 ~e~~~~~~~~~le~ae~el~~Lk~el~~~k~Le~kL~ets~~ie~Lq~El~~--ak~~e~~~~~~~s~~~~~~~~~~~~~ 287 (629)
.+..+............+.. .|-.+++.....|+.|+...-. ++....++
T Consensus 197 ~~~~R~~~~~~k~~L~~~sd----------~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~ql------------------ 248 (424)
T PF03915_consen 197 GDSNRAYMESGKKKLSEESD----------RLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQL------------------ 248 (424)
T ss_dssp ---HHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHH-----HHHH------------------
T ss_pred ccchhHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHH------------------
Q ss_pred ccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHHHH
Q 006830 288 LEGSPLLPSKSVKEELEAAKKELAAIKEEGFRFM-ASMDVIRNELRHVREETARLKKGEEKTELTVQNLNSKLLRAKAKL 366 (629)
Q Consensus 288 ~e~~~~~~~~~~~~eL~~AK~~L~~~~~E~~~l~-~~vesLr~ELe~~K~el~~lke~e~~a~~~v~sL~~EL~k~kseL 366 (629)
..+..+|..++++|.++..-+..++ .--..+-.||+++-.+-.-|...+. .+..|...|.++..=+
T Consensus 249 ---------e~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE~EL~~V~eEQqfL~~Qed----L~~DL~eDl~k~~etf 315 (424)
T PF03915_consen 249 ---------ETVAKDISRASKELKKMKEYIKTEKPIWKKIWESELQKVCEEQQFLKLQED----LLSDLKEDLKKASETF 315 (424)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q ss_pred HHHHH
Q 006830 367 EAVSA 371 (629)
Q Consensus 367 e~~~~ 371 (629)
..+..
T Consensus 316 ~lveq 320 (424)
T PF03915_consen 316 ALVEQ 320 (424)
T ss_dssp HHHHH
T ss_pred HHHHH
No 171
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.74 E-value=1.6e+03 Score=27.60 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 006830 123 SHRYAEVMRELESVKQELSKLKL 145 (629)
Q Consensus 123 ~~qya~~~~EL~svk~EL~kl~~ 145 (629)
++-|..--.||+..++=|..-++
T Consensus 319 keNy~kGqaELerRRq~leeqqq 341 (1118)
T KOG1029|consen 319 KENYEKGQAELERRRQALEEQQQ 341 (1118)
T ss_pred HHhHhhhhHHHHHHHHHHHHHHH
Confidence 46777777888887776654443
No 172
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=20.72 E-value=1.6e+03 Score=27.42 Aligned_cols=41 Identities=24% Similarity=0.286 Sum_probs=31.8
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHH
Q 006830 351 TVQNLNSKLLRAKAKLEAVSAAEEKANGIAGNLAFTLEQLK 391 (629)
Q Consensus 351 ~v~sL~~EL~k~kseLe~~~~~Eek~~~~~~~l~~~Leql~ 391 (629)
.+..|..++..++..|+...-.+.+...-+.+|...+.||.
T Consensus 217 ~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 217 DKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 45677778888888888877777777777788888888887
Done!