Query 006830
Match_columns 629
No_of_seqs 155 out of 183
Neff 5.9
Searched_HMMs 13730
Date Mon Mar 25 10:06:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006830.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/006830hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ez3a_ a.47.2.1 (A:) Syntaxin 9.8 3.8E+02 0.027 20.8 12.4 102 40-152 13-121 (124)
2 d1fxka_ a.2.5.1 (A:) Prefoldin 8.5 4.1E+02 0.03 20.3 10.7 32 307-338 71-102 (107)
3 d1zs4a1 a.35.1.9 (A:4-81) Regu 7.8 43 0.0031 25.4 0.2 15 610-624 39-53 (78)
4 d1vcsa1 a.47.2.1 (A:8-96) Vesi 6.8 4.7E+02 0.035 19.6 7.5 54 210-263 29-87 (89)
5 d1gqea_ e.38.1.1 (A:) Polypept 6.5 9E+02 0.065 22.5 12.6 37 313-349 4-42 (362)
6 d1nkpa_ a.38.1.1 (A:) Myc prot 6.2 4.8E+02 0.035 19.1 6.3 39 303-341 47-85 (88)
7 d2efla1 a.238.1.4 (A:1-288) Fo 5.5 7.7E+02 0.056 20.7 16.6 12 548-559 261-272 (288)
8 d2azeb1 e.63.1.2 (B:201-301) T 4.8 5.6E+02 0.041 19.7 5.6 33 361-393 5-37 (101)
9 d2a6qa1 d.306.1.1 (A:10-92) An 4.2 6.2E+02 0.045 18.5 5.3 36 469-504 36-72 (83)
10 d2ap3a1 a.24.27.1 (A:12-196) H 3.3 8.4E+02 0.061 18.1 17.5 33 227-259 6-38 (185)
No 1
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=9.82 E-value=3.8e+02 Score=20.84 Aligned_cols=102 Identities=15% Similarity=0.183 Sum_probs=56.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHhhhchh
Q 006830 40 SSRARELHMARRDISRYKESRKAA-------ESVKAQAESELSTARKTVKDLACRIEKTNHQAIPSMRYVERLEKSSGIE 112 (629)
Q Consensus 40 ~~~e~eL~~aq~el~k~Keql~~a-------E~~K~qal~ELe~akr~ieeL~~kLe~a~~~~~~~~~ele~~r~~e~~~ 112 (629)
..+..+|..+..++.+++..-..+ ...+.+...-...+++....++..|+.... .+... .. .
T Consensus 13 ~~Ir~~I~~i~~~v~~i~~~~~~~l~~~~~~~~~~~~l~~~~~~i~~~a~~ik~~Lk~l~~-------~~~~~---~~-~ 81 (124)
T d1ez3a_ 13 EEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQ-------SIEQE---EG-L 81 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH---HT-T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhh---hc-c
Confidence 344455666666665555443222 223555555555666666666666654421 11111 11 1
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006830 113 ENVLAERSRESHRYAEVMRELESVKQELSKLKLDMASVLE 152 (629)
Q Consensus 113 ~~~~~~~~~e~~qya~~~~EL~svk~EL~kl~~e~~~~~e 152 (629)
+.+.+...-.+.+|..+...|.-+-.+-..++.+|-..+.
T Consensus 82 ~~~s~~~Rir~~q~~~L~~kf~e~m~~yq~~q~~yr~~~k 121 (124)
T d1ez3a_ 82 NRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCK 121 (124)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1112111223589999999999999999999999976554
No 2
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=8.54 E-value=4.1e+02 Score=20.29 Aligned_cols=32 Identities=6% Similarity=0.150 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006830 307 KKELAAIKEEGFRFMASMDVIRNELRHVREET 338 (629)
Q Consensus 307 K~~L~~~~~E~~~l~~~vesLr~ELe~~K~el 338 (629)
+..++.+..++..|..-...|..+++..+..+
T Consensus 71 ~~~~e~l~~~i~~l~~q~~~l~~~l~~~~~~l 102 (107)
T d1fxka_ 71 QEKLETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555655555555444
No 3
>d1zs4a1 a.35.1.9 (A:4-81) Regulatory protein cII {Bacteriophage lambda [TaxId: 10710]}
Probab=7.80 E-value=43 Score=25.44 Aligned_cols=15 Identities=33% Similarity=0.594 Sum_probs=11.6
Q ss_pred hhhcccchhhhhhhh
Q 006830 610 KKKTKVIPNFTKLFS 624 (629)
Q Consensus 610 kkkk~~~p~~~~~~~ 624 (629)
|=|-.|||.|.|+|+
T Consensus 39 RwK~~f~~q~smlLA 53 (78)
T d1zs4a1 39 RWKRDWIPKFSMLLA 53 (78)
T ss_dssp HHHHHTHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHH
Confidence 445669999999875
No 4
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.81 E-value=4.7e+02 Score=19.58 Aligned_cols=54 Identities=15% Similarity=0.250 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhHhHHHHHHHHHHHHHHHHHHhhchh
Q 006830 210 REKEANEFSASMEVAKEKLKDLTEEID-----HCKELENKLAVTLYDVNFLHNELKSVK 263 (629)
Q Consensus 210 ~e~~~~~~~~~le~ae~el~~Lk~el~-----~~k~Le~kL~ets~~ie~Lq~El~~ak 263 (629)
+......++..+.+++.=|.++.-++- .-..+-++|-.--+++..|+.+|..++
T Consensus 29 rk~~l~~ie~~leEA~ell~qMelEvr~~p~s~R~~~~~klr~Yk~dl~~lk~elk~a~ 87 (89)
T d1vcsa1 29 KKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRSR 87 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333444456666666666666666662 455677777788888888888887654
No 5
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=6.50 E-value=9e+02 Score=22.54 Aligned_cols=37 Identities=14% Similarity=0.234 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhhhhhh
Q 006830 313 IKEEGFRFMASMDVIRN--ELRHVREETARLKKGEEKTE 349 (629)
Q Consensus 313 ~~~E~~~l~~~vesLr~--ELe~~K~el~~lke~e~~a~ 349 (629)
++..+..|...+..|+. +++.-+..+..|........
T Consensus 4 l~~~i~eL~~rl~~Lr~~fDld~kk~Rl~ELE~~lsdP~ 42 (362)
T d1gqea_ 4 VNNRIQDLTERSDVLRGYLDYDAKKERLEEVNAELEQPD 42 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCh
Confidence 44555555666666665 55677777777766555433
No 6
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.22 E-value=4.8e+02 Score=19.06 Aligned_cols=39 Identities=15% Similarity=0.370 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006830 303 LEAAKKELAAIKEEGFRFMASMDVIRNELRHVREETARL 341 (629)
Q Consensus 303 L~~AK~~L~~~~~E~~~l~~~vesLr~ELe~~K~el~~l 341 (629)
|..|-..+..+..+...+....+.|+.+.+.....+..|
T Consensus 47 L~~A~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L 85 (88)
T d1nkpa_ 47 LKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777777777777776666666666666655555555444
No 7
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.52 E-value=7.7e+02 Score=20.74 Aligned_cols=12 Identities=0% Similarity=-0.175 Sum_probs=6.7
Q ss_pred HHHHHHhhhhhh
Q 006830 548 VERELRNWRQNS 559 (629)
Q Consensus 548 vE~ELRrwr~e~ 559 (629)
.+..+..|-..+
T Consensus 261 ~~~D~~~fi~~~ 272 (288)
T d2efla1 261 QKNDSQLVIEAY 272 (288)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 445556666555
No 8
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.79 E-value=5.6e+02 Score=19.73 Aligned_cols=33 Identities=12% Similarity=0.184 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHH
Q 006830 361 RAKAKLEAVSAAEEKANGIAGNLAFTLEQLKTE 393 (629)
Q Consensus 361 k~kseLe~~~~~Eek~~~~~~~l~~~Leql~~E 393 (629)
.++.+|+.+...|......+..+...|..++..
T Consensus 5 ~L~~El~~L~~~E~~LD~li~~~~~~L~~lted 37 (101)
T d2azeb1 5 GLTQDLRQLQESEQQLDHLMNICTTQLRLLSED 37 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 344445555555555555555555555555443
No 9
>d2a6qa1 d.306.1.1 (A:10-92) Antitoxin YefM {Escherichia coli [TaxId: 562]}
Probab=4.24 E-value=6.2e+02 Score=18.53 Aligned_cols=36 Identities=17% Similarity=0.178 Sum_probs=21.1
Q ss_pred CCccccHHhhHHHHhhHHhhHHhHH-HHHHHHHHHHH
Q 006830 469 SSITISNFEYEYLRGRAVGAEELAD-KKVAAAQAWIE 504 (629)
Q Consensus 469 ~~Itis~eEye~L~~ka~eaEe~a~-kkvaaA~aqve 504 (629)
.-|-||.++|++|.--.+---.-.+ .++..++.|++
T Consensus 36 ~~VliS~~d~~sl~ETl~lls~p~n~~~L~~s~~~~~ 72 (83)
T d2a6qa1 36 ACVLMSLEEYNSLEETAYLLRSPANARRLMDSIDSLK 72 (83)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred CeEEeCHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 5688999999998765542222111 44455555443
No 10
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}
Probab=3.34 E-value=8.4e+02 Score=18.06 Aligned_cols=33 Identities=15% Similarity=0.217 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHh
Q 006830 227 KLKDLTEEIDHCKELENKLAVTLYDVNFLHNEL 259 (629)
Q Consensus 227 el~~Lk~el~~~k~Le~kL~ets~~ie~Lq~El 259 (629)
++..+...+....+++..+......+..|..++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~e~~~ 38 (185)
T d2ap3a1 6 EIKAYLKQVDKIKDDEEPIKTVGKKIAELDEKK 38 (185)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555544
Done!