Query 006831
Match_columns 629
No_of_seqs 504 out of 2388
Neff 6.5
Searched_HMMs 46136
Date Thu Mar 28 15:07:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006831.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006831hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0521 Putative GTPase activa 100.0 3.9E-67 8.5E-72 601.3 23.9 446 7-571 126-588 (785)
2 KOG0705 GTPase-activating prot 100.0 1.7E-55 3.6E-60 469.5 16.2 329 166-588 290-672 (749)
3 KOG0703 Predicted GTPase-activ 100.0 8.1E-39 1.8E-43 324.2 7.3 116 390-532 12-127 (287)
4 PF01412 ArfGap: Putative GTPa 100.0 6.6E-37 1.4E-41 278.1 5.4 115 392-531 2-116 (116)
5 smart00105 ArfGap Putative GTP 100.0 8.2E-36 1.8E-40 269.2 8.6 110 401-534 1-110 (112)
6 KOG1117 Rho- and Arf-GTPase ac 100.0 2.1E-35 4.6E-40 325.9 11.5 277 170-589 184-460 (1186)
7 KOG0818 GTPase-activating prot 100.0 2.8E-35 6.2E-40 310.3 7.6 170 400-589 5-179 (669)
8 KOG1451 Oligophrenin-1 and rel 100.0 9.2E-32 2E-36 288.1 21.1 233 7-312 131-366 (812)
9 COG5347 GTPase-activating prot 100.0 3.9E-32 8.4E-37 283.3 9.1 118 391-531 8-125 (319)
10 PLN03119 putative ADP-ribosyla 100.0 1.3E-30 2.9E-35 280.5 10.4 124 386-536 6-129 (648)
11 PLN03131 hypothetical protein; 100.0 1.9E-30 4E-35 281.4 10.0 123 387-536 7-129 (705)
12 PLN03114 ADP-ribosylation fact 99.9 3.2E-26 7E-31 235.9 8.8 118 392-531 11-128 (395)
13 KOG0706 Predicted GTPase-activ 99.9 2E-25 4.2E-30 235.6 6.3 84 391-476 11-94 (454)
14 KOG0704 ADP-ribosylation facto 99.9 5.6E-25 1.2E-29 225.2 6.9 82 393-476 9-90 (386)
15 cd07601 BAR_APPL The Bin/Amphi 99.9 2.1E-22 4.6E-27 200.1 12.7 103 7-109 111-215 (215)
16 cd07603 BAR_ACAPs The Bin/Amph 99.9 2.3E-22 5E-27 199.0 10.7 94 7-101 107-200 (200)
17 cd07602 BAR_RhoGAP_OPHN1-like 99.9 2.6E-22 5.7E-27 198.0 11.0 95 7-101 113-207 (207)
18 cd07637 BAR_ACAP3 The Bin/Amph 99.9 8.5E-22 1.8E-26 194.6 10.9 94 7-101 107-200 (200)
19 cd07631 BAR_APPL1 The Bin/Amph 99.9 1.7E-21 3.6E-26 190.9 12.5 103 7-109 111-215 (215)
20 cd07634 BAR_GAP10-like The Bin 99.9 2.1E-21 4.6E-26 190.9 11.0 95 7-101 113-207 (207)
21 cd07606 BAR_SFC_plant The Bin/ 99.8 3.3E-21 7.1E-26 190.6 10.8 94 7-100 109-202 (202)
22 cd07636 BAR_GRAF The Bin/Amphi 99.8 6.1E-21 1.3E-25 187.9 11.1 95 7-101 113-207 (207)
23 cd07635 BAR_GRAF2 The Bin/Amph 99.8 6.9E-21 1.5E-25 187.5 11.4 95 7-101 113-207 (207)
24 cd07638 BAR_ACAP2 The Bin/Amph 99.8 1.7E-20 3.8E-25 184.5 10.7 94 7-101 107-200 (200)
25 cd07639 BAR_ACAP1 The Bin/Amph 99.8 2.4E-20 5.3E-25 183.3 10.0 94 7-101 107-200 (200)
26 cd07632 BAR_APPL2 The Bin/Amph 99.8 1.2E-19 2.6E-24 176.5 11.9 101 8-108 112-214 (215)
27 cd07633 BAR_OPHN1 The Bin/Amph 99.8 8.8E-20 1.9E-24 177.6 11.0 95 7-101 113-207 (207)
28 cd01233 Unc104 Unc-104 pleckst 99.8 1.8E-18 3.9E-23 153.2 11.7 94 178-313 2-98 (100)
29 cd01251 PH_centaurin_alpha Cen 99.8 2.5E-18 5.4E-23 153.2 11.0 95 180-315 1-102 (103)
30 cd01265 PH_PARIS-1 PARIS-1 ple 99.7 1.8E-17 4E-22 145.4 11.1 90 181-312 2-93 (95)
31 cd07604 BAR_ASAPs The Bin/Amph 99.7 1.8E-17 4E-22 165.6 11.1 98 7-104 110-215 (215)
32 cd01264 PH_melted Melted pleck 99.7 3.1E-17 6.6E-22 144.9 10.3 93 180-312 2-100 (101)
33 cd01236 PH_outspread Outspread 99.7 4.5E-17 9.7E-22 144.9 10.8 92 180-310 1-101 (104)
34 cd01238 PH_Tec Tec pleckstrin 99.7 6.3E-17 1.4E-21 144.9 10.2 95 179-312 1-106 (106)
35 cd01260 PH_CNK Connector enhan 99.7 1.2E-16 2.7E-21 140.0 10.8 91 180-312 2-96 (96)
36 cd07641 BAR_ASAP1 The Bin/Amph 99.7 1.7E-16 3.6E-21 155.2 10.9 98 7-104 110-215 (215)
37 cd01247 PH_GPBP Goodpasture an 99.7 4.4E-16 9.5E-21 135.7 11.5 88 181-311 2-90 (91)
38 cd01235 PH_SETbf Set binding f 99.7 4.1E-16 8.8E-21 137.5 11.3 92 181-313 2-101 (101)
39 cd07640 BAR_ASAP3 The Bin/Amph 99.7 3.1E-16 6.6E-21 151.3 11.1 98 7-104 110-213 (213)
40 cd01257 PH_IRS Insulin recepto 99.7 9.8E-16 2.1E-20 135.8 11.7 94 178-311 2-100 (101)
41 cd01250 PH_centaurin Centaurin 99.6 7.2E-16 1.6E-20 133.4 10.4 93 180-311 1-93 (94)
42 cd01252 PH_cytohesin Cytohesin 99.6 1.6E-15 3.4E-20 139.7 12.1 92 180-314 2-114 (125)
43 cd01266 PH_Gab Gab (Grb2-assoc 99.6 2.9E-15 6.3E-20 134.5 11.3 92 181-312 2-107 (108)
44 cd01245 PH_RasGAP_CG5898 RAS G 99.6 1.6E-15 3.5E-20 133.4 9.1 91 180-311 1-97 (98)
45 cd07642 BAR_ASAP2 The Bin/Amph 99.6 5.4E-15 1.2E-19 145.5 11.3 97 8-104 111-215 (215)
46 cd01246 PH_oxysterol_bp Oxyste 99.6 1E-14 2.2E-19 125.3 11.0 90 180-312 1-91 (91)
47 cd01249 PH_oligophrenin Oligop 99.5 1.4E-14 3E-19 127.5 8.3 99 180-311 1-103 (104)
48 cd01241 PH_Akt Akt pleckstrin 99.5 2.9E-14 6.2E-19 126.8 10.4 95 178-313 1-102 (102)
49 PF00169 PH: PH domain; Inter 99.5 1.1E-13 2.4E-18 119.8 13.5 97 178-313 1-103 (104)
50 cd01244 PH_RasGAP_CG9209 RAS_G 99.5 8.7E-14 1.9E-18 122.7 10.5 88 182-311 5-97 (98)
51 cd01219 PH_FGD FGD (faciogenit 99.5 1.9E-13 4.1E-18 121.3 12.0 99 178-314 2-100 (101)
52 cd07609 BAR_SIP3_fungi The Bin 99.5 1E-13 2.2E-18 138.5 11.0 104 7-113 109-212 (214)
53 PF15409 PH_8: Pleckstrin homo 99.4 1.6E-12 3.4E-17 112.1 10.8 87 182-312 1-88 (89)
54 PF15413 PH_11: Pleckstrin hom 99.4 2.1E-12 4.6E-17 116.8 11.9 106 180-312 1-112 (112)
55 KOG0930 Guanine nucleotide exc 99.4 1.1E-12 2.3E-17 131.9 9.2 95 178-314 260-376 (395)
56 cd01220 PH_CDEP Chondrocyte-de 99.4 5.3E-12 1.2E-16 111.7 12.3 97 178-314 2-98 (99)
57 cd01253 PH_beta_spectrin Beta- 99.3 9.1E-12 2E-16 110.7 9.9 83 192-311 20-103 (104)
58 cd01263 PH_anillin Anillin Ple 99.3 1.3E-11 2.9E-16 112.8 9.7 94 180-311 3-121 (122)
59 cd01254 PH_PLD Phospholipase D 99.3 2.7E-11 5.8E-16 111.1 10.8 37 276-312 85-121 (121)
60 smart00233 PH Pleckstrin homol 99.2 1.4E-10 3E-15 98.6 12.7 97 179-313 2-101 (102)
61 cd01237 Unc112 Unc-112 pleckst 99.2 4.9E-11 1.1E-15 105.6 10.0 81 193-312 18-102 (106)
62 cd01230 PH_EFA6 EFA6 Pleckstri 99.2 8.2E-11 1.8E-15 107.1 11.2 102 180-315 2-113 (117)
63 KOG0702 Predicted GTPase-activ 99.1 7.6E-11 1.7E-15 126.8 6.5 120 391-535 13-133 (524)
64 cd00821 PH Pleckstrin homology 99.1 6.1E-10 1.3E-14 93.7 9.2 94 180-311 1-95 (96)
65 cd01218 PH_phafin2 Phafin2 Pl 99.0 4E-09 8.7E-14 94.0 12.4 99 178-318 4-103 (104)
66 PF15410 PH_9: Pleckstrin homo 99.0 1.9E-09 4.1E-14 98.6 9.9 107 180-313 2-118 (119)
67 cd00900 PH-like Pleckstrin hom 98.9 6.2E-09 1.3E-13 88.2 10.5 91 181-311 2-98 (99)
68 KOG4424 Predicted Rho/Rac guan 98.9 1.2E-07 2.6E-12 104.3 19.5 244 36-319 67-375 (623)
69 KOG0690 Serine/threonine prote 98.8 1.1E-08 2.4E-13 106.1 8.0 105 175-318 12-121 (516)
70 cd01256 PH_dynamin Dynamin ple 98.8 4.8E-08 1E-12 84.6 9.6 91 178-310 1-102 (110)
71 cd07307 BAR The Bin/Amphiphysi 98.7 9.5E-08 2.1E-12 92.0 10.3 93 7-99 100-193 (194)
72 KOG1090 Predicted dual-specifi 98.7 8.9E-09 1.9E-13 117.4 3.2 95 178-313 1634-1731(1732)
73 cd01261 PH_SOS Son of Sevenles 98.6 3.9E-07 8.4E-12 82.3 10.7 106 178-315 4-111 (112)
74 cd01234 PH_CADPS CADPS (Ca2+-d 98.5 1E-07 2.2E-12 83.2 5.3 97 180-313 4-110 (117)
75 cd01259 PH_Apbb1ip Apbb1ip (Am 98.5 3.6E-07 7.7E-12 81.4 6.7 99 180-312 2-107 (114)
76 PF14593 PH_3: PH domain; PDB: 98.4 4.7E-06 1E-10 74.4 11.6 91 175-315 10-101 (104)
77 cd01239 PH_PKD Protein kinase 98.3 2.6E-06 5.6E-11 76.4 7.5 97 179-312 1-117 (117)
78 cd01243 PH_MRCK MRCK (myotonic 98.2 1.4E-05 3E-10 72.3 11.0 39 274-312 73-118 (122)
79 cd01242 PH_ROK Rok (Rho- assoc 98.2 1.8E-05 3.9E-10 70.6 10.6 41 274-314 69-111 (112)
80 KOG0932 Guanine nucleotide exc 98.1 4.5E-06 9.7E-11 91.5 7.7 110 171-314 499-618 (774)
81 smart00721 BAR BAR domain. 98.1 1.4E-05 3E-10 80.9 10.8 95 8-102 141-238 (239)
82 KOG3751 Growth factor receptor 97.9 1.8E-05 4E-10 86.4 7.4 42 173-216 312-353 (622)
83 KOG3640 Actin binding protein 97.7 5.5E-05 1.2E-09 87.5 7.2 101 177-315 989-1108(1116)
84 KOG2059 Ras GTPase-activating 97.7 6.7E-05 1.5E-09 84.7 7.1 94 178-313 565-664 (800)
85 PTZ00267 NIMA-related protein 97.7 8.9E-05 1.9E-09 83.2 8.1 100 177-313 376-476 (478)
86 PF03114 BAR: BAR domain; Int 97.7 0.00044 9.5E-09 68.7 12.2 91 8-102 138-229 (229)
87 cd01226 PH_exo84 Exocyst compl 97.6 0.00078 1.7E-08 59.6 11.0 40 274-313 59-98 (100)
88 cd01222 PH_clg Clg (common-sit 97.6 0.001 2.2E-08 58.8 11.5 34 280-313 59-95 (97)
89 cd01262 PH_PDK1 3-Phosphoinosi 97.5 0.00041 9E-09 59.8 8.3 87 178-312 1-87 (89)
90 cd01258 PH_syntrophin Syntroph 97.5 0.00038 8.1E-09 62.5 7.9 34 278-311 72-107 (108)
91 PTZ00283 serine/threonine prot 97.4 0.002 4.3E-08 72.9 13.4 37 277-313 452-489 (496)
92 cd01224 PH_Collybistin Collybi 97.3 0.0033 7.1E-08 56.5 11.8 95 179-311 3-105 (109)
93 PF12814 Mcp5_PH: Meiotic cell 97.2 0.0055 1.2E-07 56.4 11.7 36 279-314 87-122 (123)
94 KOG0248 Cytoplasmic protein Ma 97.1 0.00025 5.5E-09 79.7 3.1 98 176-316 247-344 (936)
95 PLN02866 phospholipase D 97.1 0.0028 6E-08 75.7 11.7 38 277-314 271-308 (1068)
96 cd07608 BAR_ArfGAP_fungi The B 97.1 0.0025 5.4E-08 62.8 8.7 81 7-92 102-183 (192)
97 PLN00188 enhanced disease resi 97.0 0.0037 8.1E-08 72.0 10.4 100 178-319 4-115 (719)
98 cd01240 PH_beta-ARK Beta adren 97.0 0.0008 1.7E-08 59.8 3.9 97 178-315 3-100 (116)
99 cd01221 PH_ephexin Ephexin Ple 96.9 0.0093 2E-07 55.0 10.2 33 278-310 81-119 (125)
100 KOG1739 Serine/threonine prote 96.8 0.0014 3.1E-08 71.4 4.7 93 178-313 24-116 (611)
101 KOG3723 PH domain protein Melt 96.8 0.00082 1.8E-08 74.4 2.8 38 279-316 802-839 (851)
102 cd07595 BAR_RhoGAP_Rich-like T 96.7 0.021 4.6E-07 58.7 12.3 99 7-106 127-229 (244)
103 cd01232 PH_TRIO Trio pleckstri 96.3 0.064 1.4E-06 48.8 11.7 35 280-314 74-113 (114)
104 cd01223 PH_Vav Vav pleckstrin 96.0 0.036 7.9E-07 50.4 8.6 38 278-315 74-113 (116)
105 KOG3531 Rho guanine nucleotide 95.8 0.0037 8E-08 72.1 1.3 92 179-312 925-1018(1036)
106 KOG0521 Putative GTPase activa 95.8 0.002 4.3E-08 76.1 -0.9 76 397-476 624-700 (785)
107 cd07593 BAR_MUG137_fungi The B 95.7 0.092 2E-06 53.1 10.8 86 8-99 121-206 (215)
108 cd07594 BAR_Endophilin_B The B 95.7 0.079 1.7E-06 54.0 10.4 89 8-100 140-228 (229)
109 cd01225 PH_Cool_Pix Cool (clon 95.7 0.069 1.5E-06 48.0 8.7 53 261-313 56-109 (111)
110 cd07618 BAR_Rich1 The Bin/Amph 95.4 0.21 4.6E-06 51.4 12.3 98 8-106 128-231 (246)
111 cd07590 BAR_Bin3 The Bin/Amphi 94.9 0.25 5.4E-06 50.3 11.0 95 8-103 115-214 (225)
112 KOG1117 Rho- and Arf-GTPase ac 94.8 0.067 1.4E-06 62.3 7.1 97 178-313 492-601 (1186)
113 PF15406 PH_6: Pleckstrin homo 94.7 0.079 1.7E-06 47.4 6.0 30 281-310 81-110 (112)
114 PF13637 Ank_4: Ankyrin repeat 94.5 0.051 1.1E-06 42.0 3.9 43 544-589 4-46 (54)
115 cd01228 PH_BCR-related BCR (br 94.3 0.25 5.5E-06 43.3 8.2 30 283-312 63-93 (96)
116 cd07592 BAR_Endophilin_A The B 94.3 0.38 8.2E-06 49.0 10.8 84 8-103 135-218 (223)
117 cd07616 BAR_Endophilin_B1 The 94.2 0.3 6.5E-06 49.8 9.9 88 8-99 140-227 (229)
118 cd07591 BAR_Rvs161p The Bin/Am 93.8 0.57 1.2E-05 47.7 11.0 93 9-102 117-212 (224)
119 cd01227 PH_Dbs Dbs (DBL's big 93.3 0.92 2E-05 42.5 10.6 36 280-315 80-117 (133)
120 cd07615 BAR_Endophilin_A3 The 93.3 0.82 1.8E-05 46.5 11.0 84 8-103 135-218 (223)
121 cd07613 BAR_Endophilin_A1 The 93.2 0.79 1.7E-05 46.6 10.7 84 8-103 135-218 (223)
122 cd07600 BAR_Gvp36 The Bin/Amph 92.9 0.84 1.8E-05 47.0 10.5 87 8-99 154-240 (242)
123 cd07614 BAR_Endophilin_A2 The 92.8 0.98 2.1E-05 45.9 10.8 84 8-103 135-218 (223)
124 cd07619 BAR_Rich2 The Bin/Amph 92.4 1.9 4.2E-05 44.5 12.4 98 8-106 128-233 (248)
125 PF15404 PH_4: Pleckstrin homo 92.2 1.4 3.1E-05 43.5 10.7 25 288-312 160-184 (185)
126 KOG3543 Ca2+-dependent activat 91.9 0.046 9.9E-07 61.5 -0.1 97 179-317 465-569 (1218)
127 cd07599 BAR_Rvs167p The Bin/Am 91.8 1.2 2.5E-05 45.0 10.0 86 11-97 120-212 (216)
128 PF15408 PH_7: Pleckstrin homo 91.8 0.064 1.4E-06 45.8 0.7 33 280-312 63-96 (104)
129 cd07611 BAR_Amphiphysin_I_II T 91.8 1.7 3.7E-05 43.8 10.9 92 12-104 115-209 (211)
130 cd07588 BAR_Amphiphysin The Bi 91.7 1.8 3.9E-05 43.7 11.1 93 11-104 114-209 (211)
131 PF06456 Arfaptin: Arfaptin-li 91.3 2.1 4.5E-05 43.8 11.2 87 8-94 137-229 (229)
132 cd07612 BAR_Bin2 The Bin/Amphi 91.2 1.9 4.1E-05 43.5 10.5 92 12-104 115-209 (211)
133 cd01231 PH_Lnk LNK-family Plec 90.9 0.89 1.9E-05 40.3 6.9 35 277-311 71-106 (107)
134 PF13857 Ank_5: Ankyrin repeat 90.4 0.3 6.4E-06 38.3 3.2 39 543-584 18-56 (56)
135 cd00011 BAR_Arfaptin_like The 90.3 3.6 7.8E-05 41.3 11.4 90 8-97 105-200 (203)
136 cd01248 PH_PLC Phospholipase C 89.9 1.3 2.8E-05 40.0 7.5 34 278-311 77-114 (115)
137 KOG3771 Amphiphysin [Intracell 89.9 1.6 3.4E-05 48.4 9.3 93 14-107 135-230 (460)
138 PF08458 PH_2: Plant pleckstri 89.6 3.5 7.5E-05 37.3 9.7 40 275-314 65-104 (110)
139 cd07617 BAR_Endophilin_B2 The 89.6 2.3 4.9E-05 43.2 9.5 78 9-99 141-218 (220)
140 cd07620 BAR_SH3BP1 The Bin/Amp 89.4 3.5 7.6E-05 42.6 10.9 96 7-103 127-239 (257)
141 KOG1737 Oxysterol-binding prot 88.9 0.27 5.8E-06 58.1 2.7 94 179-317 78-172 (799)
142 KOG3531 Rho guanine nucleotide 88.9 0.45 9.8E-06 55.6 4.4 45 277-321 808-852 (1036)
143 cd07660 BAR_Arfaptin The Bin/A 88.7 3.9 8.3E-05 41.0 10.3 89 8-96 104-196 (201)
144 KOG0509 Ankyrin repeat and DHH 86.2 0.66 1.4E-05 52.9 3.7 42 545-589 116-157 (600)
145 KOG0517 Beta-spectrin [Cytoske 85.7 0.73 1.6E-05 58.0 4.0 107 179-318 2300-2414(2473)
146 KOG4214 Myotrophin and similar 85.6 0.71 1.5E-05 40.6 2.8 42 544-589 5-46 (117)
147 KOG2070 Guanine nucleotide exc 84.7 10 0.00022 42.5 11.7 80 194-311 324-404 (661)
148 PF12796 Ank_2: Ankyrin repeat 83.8 1.8 3.9E-05 36.3 4.5 42 544-588 29-70 (89)
149 PF08397 IMD: IRSp53/MIM homol 82.8 21 0.00046 36.0 12.6 52 45-96 151-203 (219)
150 cd05394 RasGAP_RASA2 RASA2 (or 80.9 1.6 3.4E-05 46.6 3.7 27 177-203 282-312 (313)
151 KOG0512 Fetal globin-inducing 80.7 1.3 2.8E-05 43.3 2.7 38 546-586 135-172 (228)
152 PF15405 PH_5: Pleckstrin homo 79.9 2.9 6.3E-05 39.2 4.7 33 280-312 99-134 (135)
153 PF10455 BAR_2: Bin/amphiphysi 79.9 12 0.00027 39.5 9.9 89 8-101 199-287 (289)
154 PHA02884 ankyrin repeat protei 79.5 2.4 5.1E-05 45.2 4.5 42 545-588 74-115 (300)
155 cd07661 BAR_ICA69 The Bin/Amph 79.3 18 0.0004 36.0 10.2 89 8-96 105-199 (204)
156 KOG0248 Cytoplasmic protein Ma 78.2 0.92 2E-05 52.1 1.0 102 172-319 253-354 (936)
157 PHA02741 hypothetical protein; 77.8 3.1 6.8E-05 39.8 4.5 43 545-588 64-109 (169)
158 PHA02730 ankyrin-like protein; 77.7 2.5 5.5E-05 49.6 4.4 43 544-588 44-88 (672)
159 PHA02743 Viral ankyrin protein 77.6 2.6 5.7E-05 40.4 3.9 30 558-588 76-105 (166)
160 cd07624 BAR_SNX7_30 The Bin/Am 77.4 14 0.00031 36.7 9.2 61 39-99 139-199 (200)
161 PHA02878 ankyrin repeat protei 77.2 2.7 5.8E-05 47.2 4.4 41 545-588 41-81 (477)
162 PF12796 Ank_2: Ankyrin repeat 77.0 3.7 8E-05 34.4 4.2 38 545-589 1-38 (89)
163 cd07659 BAR_PICK1 The Bin/Amph 75.3 29 0.00063 34.9 10.4 52 44-95 157-208 (215)
164 PF13857 Ank_5: Ankyrin repeat 74.8 1.5 3.2E-05 34.3 1.1 25 562-588 2-27 (56)
165 KOG0195 Integrin-linked kinase 74.8 2.5 5.4E-05 44.2 3.0 44 547-594 73-116 (448)
166 KOG3523 Putative guanine nucle 74.7 29 0.00063 40.0 11.4 34 277-310 552-591 (695)
167 cd05135 RasGAP_RASAL Ras GTPas 73.1 4.4 9.5E-05 43.8 4.5 27 177-203 302-333 (333)
168 PHA02875 ankyrin repeat protei 73.1 4.2 9.1E-05 44.5 4.5 42 544-588 5-46 (413)
169 PHA02736 Viral ankyrin protein 72.3 2.3 4.9E-05 39.9 1.9 41 547-588 61-103 (154)
170 cd07596 BAR_SNX The Bin/Amphip 71.6 38 0.00083 33.2 10.6 89 10-98 119-216 (218)
171 KOG0509 Ankyrin repeat and DHH 71.4 3.4 7.5E-05 47.3 3.3 43 544-588 81-123 (600)
172 PHA03095 ankyrin-like protein; 71.2 4.7 0.0001 44.7 4.4 41 544-586 86-126 (471)
173 PHA02736 Viral ankyrin protein 71.0 5.7 0.00012 37.1 4.3 43 544-588 95-137 (154)
174 PHA02743 Viral ankyrin protein 70.6 4.5 9.7E-05 38.7 3.5 43 544-588 23-68 (166)
175 PHA02795 ankyrin-like protein; 69.2 5.7 0.00012 44.5 4.4 42 544-588 224-265 (437)
176 PF09325 Vps5: Vps5 C terminal 68.9 51 0.0011 33.0 11.0 91 9-99 136-235 (236)
177 cd07628 BAR_Atg24p The Bin/Amp 68.4 46 0.00099 32.8 10.2 61 39-99 124-184 (185)
178 KOG4424 Predicted Rho/Rac guan 67.7 6.6 0.00014 44.8 4.5 56 260-315 540-597 (623)
179 KOG3551 Syntrophins (type beta 67.2 4.5 9.8E-05 43.9 3.0 38 178-215 292-330 (506)
180 KOG4177 Ankyrin [Cell wall/mem 67.0 4.9 0.00011 49.7 3.6 42 544-588 543-584 (1143)
181 KOG4807 F-actin binding protei 66.6 0.094 2E-06 56.2 -9.6 52 261-313 63-114 (593)
182 cd07622 BAR_SNX4 The Bin/Amphi 66.3 66 0.0014 32.2 11.0 62 37-98 136-197 (201)
183 PHA03095 ankyrin-like protein; 65.0 6.8 0.00015 43.5 4.0 43 544-588 120-163 (471)
184 cd07598 BAR_FAM92 The Bin/Amph 64.7 77 0.0017 32.0 11.1 59 36-94 137-195 (211)
185 PHA02875 ankyrin repeat protei 64.7 7.9 0.00017 42.3 4.4 43 544-589 138-180 (413)
186 PHA02884 ankyrin repeat protei 64.3 8.6 0.00019 40.9 4.5 43 543-588 106-148 (300)
187 PHA02791 ankyrin-like protein; 64.1 8.7 0.00019 40.5 4.4 41 545-588 65-105 (284)
188 cd05134 RasGAP_RASA3 RASA3 (or 63.8 2.2 4.7E-05 45.6 -0.2 27 177-203 279-309 (310)
189 PRK12495 hypothetical protein; 63.6 4.3 9.4E-05 40.9 1.9 35 394-432 31-67 (226)
190 KOG4236 Serine/threonine prote 63.4 5.7 0.00012 45.1 2.9 36 278-314 477-524 (888)
191 cd07623 BAR_SNX1_2 The Bin/Amp 63.2 79 0.0017 32.1 11.0 89 11-99 126-221 (224)
192 PLN03192 Voltage-dependent pot 63.0 8.1 0.00018 46.7 4.5 43 543-588 624-666 (823)
193 KOG1710 MYND Zn-finger and ank 62.9 4.6 9.9E-05 42.4 1.9 51 527-588 39-90 (396)
194 PHA02798 ankyrin-like protein; 62.1 8.4 0.00018 43.4 4.2 42 544-588 261-302 (489)
195 PHA02989 ankyrin repeat protei 61.4 9 0.00019 43.3 4.2 42 544-588 259-300 (494)
196 PLN03192 Voltage-dependent pot 61.0 9.6 0.00021 46.1 4.6 44 542-588 526-569 (823)
197 cd07601 BAR_APPL The Bin/Amphi 60.9 1.6E+02 0.0034 30.0 12.5 98 37-134 101-211 (215)
198 PTZ00322 6-phosphofructo-2-kin 60.8 11 0.00025 44.4 5.0 42 544-588 118-159 (664)
199 cd05128 RasGAP_GAP1_like The G 60.6 2.4 5.2E-05 45.4 -0.5 28 176-203 284-315 (315)
200 PF00643 zf-B_box: B-box zinc 60.0 5.9 0.00013 28.9 1.6 33 403-435 3-36 (42)
201 PHA02716 CPXV016; CPX019; EVM0 59.7 7.8 0.00017 46.4 3.4 40 545-586 501-544 (764)
202 TIGR00613 reco DNA repair prot 59.4 7.9 0.00017 39.3 3.0 33 400-432 144-177 (241)
203 KOG4412 26S proteasome regulat 59.0 9.3 0.0002 37.8 3.2 42 544-588 109-150 (226)
204 PHA02795 ankyrin-like protein; 58.7 10 0.00022 42.6 3.9 38 549-588 195-232 (437)
205 PHA02874 ankyrin repeat protei 58.6 11 0.00023 41.8 4.1 43 544-588 257-299 (434)
206 KOG0502 Integral membrane anky 58.5 5.7 0.00012 40.2 1.7 41 545-588 230-270 (296)
207 KOG0515 p53-interacting protei 58.4 9.9 0.00021 43.0 3.6 39 544-585 586-624 (752)
208 KOG0512 Fetal globin-inducing 58.0 11 0.00024 36.9 3.6 41 544-587 100-140 (228)
209 KOG1118 Lysophosphatidic acid 57.7 63 0.0014 34.4 9.1 56 40-97 175-231 (366)
210 PHA02876 ankyrin repeat protei 57.0 12 0.00026 44.1 4.4 42 544-587 445-486 (682)
211 PF15518 L_protein_N: L protei 56.1 29 0.00063 33.7 5.9 62 14-81 3-64 (183)
212 PHA03100 ankyrin repeat protei 55.9 13 0.00028 41.4 4.2 41 545-588 145-187 (480)
213 cd07627 BAR_Vps5p The Bin/Amph 55.7 94 0.002 31.2 10.1 60 37-96 153-212 (216)
214 cd01255 PH_TIAM TIAM Pleckstri 55.5 36 0.00077 32.3 6.2 40 277-316 110-157 (160)
215 KOG3551 Syntrophins (type beta 55.3 18 0.00038 39.5 4.8 39 280-318 236-276 (506)
216 PHA02859 ankyrin repeat protei 55.1 15 0.00033 36.5 4.2 29 556-586 104-132 (209)
217 PF13606 Ank_3: Ankyrin repeat 54.3 19 0.00041 24.5 3.3 26 544-570 5-30 (30)
218 cd07664 BAR_SNX2 The Bin/Amphi 54.3 1.5E+02 0.0033 30.4 11.3 85 13-97 138-229 (234)
219 PHA02741 hypothetical protein; 54.2 18 0.00039 34.5 4.4 41 545-588 102-143 (169)
220 PHA02876 ankyrin repeat protei 53.8 15 0.00033 43.2 4.6 28 559-588 325-352 (682)
221 PHA02859 ankyrin repeat protei 53.4 15 0.00033 36.5 3.9 37 549-588 167-203 (209)
222 KOG4407 Predicted Rho GTPase-a 53.4 1.3 2.8E-05 54.2 -4.3 109 178-313 923-1041(1973)
223 PHA02878 ankyrin repeat protei 53.3 16 0.00034 41.0 4.4 41 544-587 204-244 (477)
224 PF11781 RRN7: RNA polymerase 53.2 9.4 0.0002 27.5 1.7 25 403-430 8-32 (36)
225 KOG1170 Diacylglycerol kinase 52.9 0.68 1.5E-05 54.0 -6.4 35 279-313 60-94 (1099)
226 cd07589 BAR_DNMBP The Bin/Amph 52.8 85 0.0018 31.1 9.1 71 14-94 115-186 (195)
227 PHA02874 ankyrin repeat protei 52.8 17 0.00037 40.2 4.5 45 542-589 36-80 (434)
228 KOG1729 FYVE finger containing 52.4 6.8 0.00015 41.4 1.2 45 275-319 102-146 (288)
229 KOG3725 SH3 domain protein SH3 52.0 92 0.002 32.3 9.0 58 37-96 199-257 (375)
230 PHA03100 ankyrin repeat protei 51.9 17 0.00037 40.4 4.4 42 544-588 253-294 (480)
231 KOG1738 Membrane-associated gu 51.2 2.6 5.6E-05 48.3 -2.2 35 179-214 563-599 (638)
232 KOG3520 Predicted guanine nucl 51.0 1.8E+02 0.0039 36.4 12.8 43 278-320 683-728 (1167)
233 PHA02946 ankyin-like protein; 50.8 13 0.00028 41.7 3.1 30 557-588 54-83 (446)
234 PHA02716 CPXV016; CPX019; EVM0 49.6 17 0.00037 43.6 4.1 41 544-586 215-256 (764)
235 PHA02946 ankyin-like protein; 49.2 21 0.00044 40.1 4.5 39 545-586 76-114 (446)
236 TIGR00870 trp transient-recept 48.6 22 0.00047 42.4 4.8 11 576-586 81-91 (743)
237 PHA02798 ankyrin-like protein; 47.8 20 0.00044 40.4 4.2 28 557-585 163-190 (489)
238 PF08271 TF_Zn_Ribbon: TFIIB z 47.4 13 0.00028 27.6 1.7 27 405-432 2-28 (43)
239 KOG0510 Ankyrin repeat protein 47.2 21 0.00045 42.5 4.1 42 544-588 276-317 (929)
240 PHA02791 ankyrin-like protein; 46.9 23 0.0005 37.3 4.2 40 544-588 33-72 (284)
241 KOG3549 Syntrophins (type gamm 46.5 46 0.001 35.9 6.2 38 278-315 350-388 (505)
242 cd07605 I-BAR_IMD Inverse (I)- 45.6 2.5E+02 0.0054 28.7 11.2 40 63-102 180-220 (223)
243 TIGR02419 C4_traR_proteo phage 45.5 5.9 0.00013 32.2 -0.4 33 400-433 28-62 (63)
244 KOG0511 Ankyrin repeat protein 45.4 23 0.0005 38.6 3.8 58 521-589 24-81 (516)
245 smart00401 ZnF_GATA zinc finge 44.8 18 0.00039 28.1 2.2 36 403-438 3-40 (52)
246 PF01286 XPA_N: XPA protein N- 44.8 7.3 0.00016 27.8 0.0 27 404-430 4-31 (34)
247 cd07606 BAR_SFC_plant The Bin/ 44.8 3.4E+02 0.0074 27.3 12.9 80 37-116 99-190 (202)
248 PRK11019 hypothetical protein; 44.7 4.2 9.1E-05 35.4 -1.5 39 402-441 35-75 (88)
249 KOG0508 Ankyrin repeat protein 44.5 19 0.00041 40.4 3.1 32 555-588 508-539 (615)
250 cd07603 BAR_ACAPs The Bin/Amph 43.6 3.5E+02 0.0076 27.1 11.9 23 41-63 101-123 (200)
251 KOG0592 3-phosphoinositide-dep 43.6 34 0.00074 39.2 4.9 87 176-312 449-536 (604)
252 cd07639 BAR_ACAP1 The Bin/Amph 43.2 3.5E+02 0.0077 27.2 11.6 57 39-95 99-158 (200)
253 KOG0502 Integral membrane anky 43.0 17 0.00037 37.0 2.3 42 544-588 163-204 (296)
254 PHA02917 ankyrin-like protein; 42.6 25 0.00055 41.6 4.0 33 554-588 208-240 (661)
255 PF00023 Ank: Ankyrin repeat H 41.9 43 0.00093 22.8 3.6 26 545-571 6-31 (33)
256 KOG3676 Ca2+-permeable cation 41.7 26 0.00056 41.6 3.8 62 517-590 171-253 (782)
257 cd07662 BAR_SNX6 The Bin/Amphi 41.4 3.1E+02 0.0068 27.9 11.0 79 9-96 134-212 (218)
258 KOG4305 RhoGEF GTPase [Signal 41.3 79 0.0017 39.1 7.8 38 282-319 655-692 (1029)
259 PRK00085 recO DNA repair prote 41.0 13 0.00028 37.9 1.1 32 400-431 146-178 (247)
260 cd07667 BAR_SNX30 The Bin/Amph 40.8 2.3E+02 0.005 29.3 10.1 83 10-97 155-237 (240)
261 KOG0514 Ankyrin repeat protein 40.4 28 0.00061 37.9 3.5 43 543-588 342-384 (452)
262 cd07635 BAR_GRAF2 The Bin/Amph 40.3 3.9E+02 0.0084 27.0 11.4 80 39-118 105-196 (207)
263 PHA02730 ankyrin-like protein; 39.9 37 0.00081 40.1 4.8 46 540-588 342-389 (672)
264 KOG0510 Ankyrin repeat protein 39.8 22 0.00048 42.3 2.9 33 554-588 133-165 (929)
265 COG1381 RecO Recombinational D 39.1 12 0.00027 38.7 0.6 30 401-430 152-182 (251)
266 PTZ00322 6-phosphofructo-2-kin 39.1 34 0.00075 40.4 4.4 45 541-588 82-126 (664)
267 PHA02989 ankyrin repeat protei 36.6 36 0.00079 38.4 4.0 33 554-588 87-119 (494)
268 PF00320 GATA: GATA zinc finge 36.5 14 0.00031 26.5 0.4 31 406-436 1-33 (36)
269 cd07602 BAR_RhoGAP_OPHN1-like 36.4 4.7E+02 0.01 26.5 11.8 81 38-118 104-196 (207)
270 KOG0195 Integrin-linked kinase 35.1 40 0.00087 35.6 3.6 42 544-588 37-78 (448)
271 cd07634 BAR_GAP10-like The Bin 34.9 5E+02 0.011 26.3 12.9 98 10-118 87-196 (207)
272 KOG1264 Phospholipase C [Lipid 34.7 57 0.0012 39.0 5.0 55 262-316 855-913 (1267)
273 cd05395 RasGAP_RASA4 Ras GTPas 34.7 27 0.00059 37.8 2.5 25 179-203 302-331 (337)
274 PF04192 Utp21: Utp21 specific 34.6 2.8E+02 0.006 28.6 9.6 59 61-127 167-226 (237)
275 TIGR00870 trp transient-recept 34.2 43 0.00093 39.9 4.3 45 544-589 131-187 (743)
276 PHA02917 ankyrin-like protein; 33.6 36 0.00078 40.3 3.4 38 545-585 456-493 (661)
277 cd07621 BAR_SNX5_6 The Bin/Amp 32.4 5.1E+02 0.011 26.4 11.0 63 33-95 150-212 (219)
278 KOG0522 Ankyrin repeat protein 31.7 35 0.00075 38.8 2.7 42 544-588 58-99 (560)
279 cd07631 BAR_APPL1 The Bin/Amph 31.2 5.8E+02 0.013 26.0 14.7 113 10-133 85-210 (215)
280 cd07645 I-BAR_IMD_BAIAP2L1 Inv 31.1 4.8E+02 0.011 26.7 10.3 43 60-102 178-221 (226)
281 COG2174 RPL34A Ribosomal prote 30.9 27 0.00058 30.5 1.3 35 396-430 27-78 (93)
282 TIGR01834 PHA_synth_III_E poly 30.3 7.3E+02 0.016 26.8 17.8 66 13-78 154-219 (320)
283 cd00204 ANK ankyrin repeats; 29.5 81 0.0017 26.7 4.2 42 544-588 43-84 (126)
284 KOG0119 Splicing factor 1/bran 29.2 1.7E+02 0.0037 33.2 7.3 67 401-470 259-332 (554)
285 PHA00080 DksA-like zinc finger 29.2 14 0.00031 30.8 -0.6 32 401-433 29-62 (72)
286 cd07646 I-BAR_IMD_IRSp53 Inver 28.9 6.6E+02 0.014 25.9 11.6 44 59-102 179-223 (232)
287 COG0666 Arp FOG: Ankyrin repea 28.7 75 0.0016 30.0 4.3 45 544-589 109-159 (235)
288 KOG4412 26S proteasome regulat 28.5 40 0.00086 33.5 2.2 39 548-588 79-117 (226)
289 KOG3362 Predicted BBOX Zn-fing 28.5 22 0.00048 33.6 0.4 34 401-435 116-150 (156)
290 COG1997 RPL43A Ribosomal prote 28.4 59 0.0013 28.3 2.9 32 399-432 31-62 (89)
291 cd07663 BAR_SNX5 The Bin/Amphi 28.2 6.6E+02 0.014 25.6 11.0 60 36-95 152-211 (218)
292 cd07685 F-BAR_Fes The F-BAR (F 28.1 5.2E+02 0.011 26.7 10.1 59 8-69 138-196 (237)
293 cd07657 F-BAR_Fes_Fer The F-BA 27.8 6.8E+02 0.015 25.7 11.9 57 8-69 133-196 (237)
294 KOG4047 Docking protein 1 (p62 27.5 37 0.0008 37.9 2.0 28 177-204 7-35 (429)
295 KOG1539 WD repeat protein [Gen 27.1 3E+02 0.0064 33.3 9.1 102 15-129 795-898 (910)
296 PHA02792 ankyrin-like protein; 25.9 67 0.0014 37.8 3.8 29 558-588 393-421 (631)
297 cd07666 BAR_SNX7 The Bin/Amphi 24.7 7.9E+02 0.017 25.5 10.9 80 11-95 159-238 (243)
298 PF14803 Nudix_N_2: Nudix N-te 24.6 34 0.00074 24.4 0.7 30 404-434 1-33 (34)
299 PTZ00332 paraflagellar rod pro 24.4 1.1E+03 0.024 27.0 14.8 69 37-110 412-481 (589)
300 PF07189 SF3b10: Splicing fact 24.3 2.1E+02 0.0046 24.5 5.5 61 13-77 5-71 (79)
301 cd07665 BAR_SNX1 The Bin/Amphi 24.1 8E+02 0.017 25.2 11.1 57 32-88 157-220 (234)
302 KOG0508 Ankyrin repeat protein 23.7 78 0.0017 35.8 3.5 38 545-585 88-125 (615)
303 cd07644 I-BAR_IMD_BAIAP2L2 Inv 23.4 6.6E+02 0.014 25.5 9.6 41 59-99 168-209 (215)
304 KOG1264 Phospholipase C [Lipid 23.3 82 0.0018 37.8 3.7 34 177-212 474-507 (1267)
305 smart00290 ZnF_UBP Ubiquitin C 22.8 51 0.0011 24.8 1.5 24 405-428 1-24 (50)
306 PRK00423 tfb transcription ini 22.7 57 0.0012 34.8 2.3 30 403-433 11-40 (310)
307 PF07282 OrfB_Zn_ribbon: Putat 22.5 57 0.0012 26.4 1.8 27 403-431 28-54 (69)
308 PF01258 zf-dskA_traR: Prokary 22.3 9.1 0.0002 27.3 -2.6 29 405-433 5-34 (36)
309 KOG4177 Ankyrin [Cell wall/mem 21.5 99 0.0021 38.8 4.2 41 545-588 577-617 (1143)
310 cd03031 GRX_GRX_like Glutaredo 21.2 64 0.0014 30.7 2.0 36 392-436 88-123 (147)
311 PRK11788 tetratricopeptide rep 21.1 71 0.0015 34.1 2.7 31 396-433 348-378 (389)
312 PF11172 DUF2959: Protein of u 21.1 8.6E+02 0.019 24.5 12.1 116 6-130 62-201 (201)
313 PRK13715 conjugal transfer pro 20.7 17 0.00037 30.5 -1.7 33 402-434 33-66 (73)
314 cd07160 NR_DBD_LXR DNA-binding 20.3 60 0.0013 29.0 1.5 31 402-435 17-47 (101)
315 PHA02792 ankyrin-like protein; 20.1 1.2E+02 0.0027 35.6 4.4 40 544-586 413-452 (631)
No 1
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=100.00 E-value=3.9e-67 Score=601.28 Aligned_cols=446 Identities=40% Similarity=0.604 Sum_probs=354.0
Q ss_pred hhhhhhHhHHHHHHHHHHhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 006831 7 TVAFNGDGNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRF 86 (629)
Q Consensus 7 ~~~Fe~~q~kyd~~~~ky~slsk~k~~~~~~E~a~eL~~aRk~f~~asldyv~~l~~vq~kk~~e~le~l~~~~~a~~~f 86 (629)
-+.||++++.||.+++||.+++|.+++.+..|.+++|+.+|+.|++.+||||.+|+.+|.||++++||++++||+||.+|
T Consensus 126 kk~f~ka~~~~d~a~~k~~~l~k~~~~~~~~e~~~~l~~~r~~f~~~~~~y~~~ln~~q~kk~~~~le~~l~~~~aq~~f 205 (785)
T KOG0521|consen 126 KKLFEKASEEYDLALVKYSRLPKKRRSKVKTEVEEELAAARRKFQLTALDYVLALNVLQAKKQFEILETLLGFMHAQINF 205 (785)
T ss_pred hHHHHHHHhhHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHHHHHHhccch
Confidence 47899999999999999999999999888899999999999999999999999999999999999999999999999999
Q ss_pred HhhhhHhhhhchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCCCchHHHHH
Q 006831 87 FKQGYELLHQMEPFINQVLAYAQQSRECSDYEQASLHQRMQDYLKQIDRESRQCLNGSLGSPSGDNVKPFPRNSNKLIEA 166 (629)
Q Consensus 87 f~~g~e~~~~l~p~~~~l~~~~q~~r~~~~~~~~~L~~~m~~~k~qi~~~~~~s~~~~~~~ps~~~~~~~~~~~~k~~~~ 166 (629)
|++|++++++|+||++++..++++++.+++.+++.+.++++.++.+.+...+.- .....|++.
T Consensus 206 F~~g~~l~~~m~p~~~~i~~~v~ql~~~~~~e~~am~~~~q~l~~~~~~~~~~~--~~~~~~~~~--------------- 268 (785)
T KOG0521|consen 206 FKQGEDLLSQMDPYIKKVATYVQQLREESDAEQRAMEQRYQELRSASNLESRPK--SDSASPSGG--------------- 268 (785)
T ss_pred hcccHhHHhhhhHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHhhhhhhcc--ccccccccc---------------
Confidence 999999999999999999999999999999999999999999988877655441 111122221
Q ss_pred HHhhhccCCcceeEeeeeeeccCCCCCCceeEEEEEecCceEEEEeCCCCCCCcCCCcccccCCCCCCcccccccccccc
Q 006831 167 AMQSAVKGKVQTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSS 246 (629)
Q Consensus 167 ~~~~~~~~~~~~iKqGyL~Krs~~~~k~WkRRwFvL~~~glLyYy~~~~~~~~g~~~~~~~~~~~~~~~g~g~l~~~~~~ 246 (629)
+........|||+++..+..+.|+||||... ++.+.|.......
T Consensus 269 ------~~~~~~~~~~~l~~k~~~~~~tw~r~~f~~q-~~~l~~~~r~~~~----------------------------- 312 (785)
T KOG0521|consen 269 ------NLKLGYRMEGYLRKKASNASKTWKRRWFSIQ-DGQLGYQHRGADA----------------------------- 312 (785)
T ss_pred ------cccchhhhhhhhhhhcccchhhHHhhhhhhh-ccccccccccccc-----------------------------
Confidence 1122345689999999988899999999998 4544444322211
Q ss_pred ccCCCccccccceeeEeecccceeecCCCCCCCcceEEEeeCCcEEEEEeCCHHHHHHHHHHHHHHHHHHhccCCccccc
Q 006831 247 HYHGGVHDEKSVARHTVNLLTSTIKPDADQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVIASLLSFQTPERVN 326 (629)
Q Consensus 247 ~~~g~v~d~~~~~~~~i~l~~~~vk~~~d~~drrfcF~Iit~~rty~LqAeSe~E~~~WI~aI~~aI~~~l~~~~~~~~~ 326 (629)
. .....++.+|.|++.++..++||||+|++|+|+|+|||+|+.+.++||.+|++.|..+++...++...
T Consensus 313 ~-----------~~~~~dL~~csvk~~~~~~drr~CF~iiS~tks~~lQAes~~d~~~Wi~~i~nsi~s~l~~~~~~~~~ 381 (785)
T KOG0521|consen 313 E-----------NVLIEDLRTCSVKPDAEQRDRRFCFEIISPTKSYLLQAESEKDCQDWISALQNSILSALNSAFLGQDS 381 (785)
T ss_pred c-----------ccccccchhccccCCcccccceeeEEEecCCcceEEecCchhHHHHHHHHHHHHHHHHHhccCccccc
Confidence 0 02456789999999888889999999999999999999999999999999999999999987776522
Q ss_pred cccccCCCCCCCCccccccccCCccCCCCCCccchhhcccccccCCCCcCCCcccchhhhhccccchHHHHHhccCCCCC
Q 006831 327 VKHCLSSGPKESFDRCFIRESGLLVDSPYVDQTTIEEHASKNITGGDHLHSSKSLGDLEYIVKNEKPIDLLRRVYGNNKC 406 (629)
Q Consensus 327 ~~~~l~~~p~~s~~~~~~s~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~N~~C 406 (629)
...+ ..++++..+++. ..+.+. ....++ ..+...++..++.+|||..|
T Consensus 382 ~~~~----~~~~~~~~~~s~-~~~~s~---------~~s~~~------------------~~~~~~~~~~vq~~pgN~~c 429 (785)
T KOG0521|consen 382 TGGR----NTQSGHSSSASY-STITSA---------NTSRER------------------LNKGISVIEEVQSVPGNAQC 429 (785)
T ss_pred ccCC----Cccccccccccc-cccccc---------cccccc------------------cccCcchhhhhhcCCchhhh
Confidence 1111 111111111110 000000 000000 00112267889999999999
Q ss_pred CCCCCCCCCceecccceeEeccccccccccCcccceeeEeecCCCcCChhHHHHHhhcChhHHHHHHHhhhccCCCCCcc
Q 006831 407 ADCGASEPDWASLNLGVLICIQCSGVHRNLGVHISKVRSLTLDVKVWEPSVLNLFQSLGNIYANSVWEELLRIGNNSLTD 486 (629)
Q Consensus 407 aDCg~~~p~w~s~n~Gv~lC~~CsgvHR~LG~hiSkVrSl~lD~~~w~~~~l~~~~~~GN~~~N~i~e~~l~~~~~~~~~ 486 (629)
||||+++|+|+|+|+||.+||+||||||+|||||||||||+|| .|+++.+.+|+.+||..+|.|||+.+++..
T Consensus 430 ~Dcg~p~ptw~S~NLgv~~CIecSGvhRslGvh~SkvrsLtLD--~~~~~l~~l~~~lgn~~~N~i~e~~l~~~~----- 502 (785)
T KOG0521|consen 430 CDCGAPEPTWASINLGVLLCIECSGVHRSLGVHISKVRSLTLD--VWEPELLLLFKNLGNKYVNEIYEALLPSYD----- 502 (785)
T ss_pred hhcCCCCCchHhhhhchhhHhhccccccccCchhhhhhhhhhh--ccCcHHHHHHHHhCcchhhhhhhccccccc-----
Confidence 9999999999999999999999999999999999999999999 599999999999999999999999998731
Q ss_pred ccccCccccccccccccCCCCCCCCHHHHHHHHHHHhccCcccccCCCCcch----------------hhHHHHHHHHHh
Q 006831 487 ERHMGFSRTDKQKRFIVRKPNPDDSISVKEQYIHAKYAEKIFVHKRKDHHHL----------------LSVAQQLWESVR 550 (629)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~kP~~~~~~~~re~fI~~KY~~k~f~~~~~~~~~~----------------~~~~~~l~~av~ 550 (629)
..+|.+..+...|+.||++||+++.|....+..... ..-..+++++|.
T Consensus 503 ----------------~~~~~~~~~~~~r~~~i~~kyve~~F~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (785)
T KOG0521|consen 503 ----------------SSKPTASSSRQAREAWIKAKYVERRFSVKEPQIKRLYLERLLEAIKSILESASASGVQISEGVS 566 (785)
T ss_pred ----------------ccCCCCccchhhhhHhhhcccceeeEeecccchhhhhhhhhhhhhhhhhhhhhhhhhhHhhccc
Confidence 368888777999999999999999999997654210 122456777776
Q ss_pred cCCHHH-HHHHHHhCCCCcccc
Q 006831 551 DNDKKA-VYRQIICSEPNVNAI 571 (629)
Q Consensus 551 ~~d~~~-~~~~l~~~gadvn~~ 571 (629)
.++.+. ++.+++....|.+..
T Consensus 567 ~~~~~~~v~~l~~~~~~d~~~~ 588 (785)
T KOG0521|consen 567 GSSREETVYHLIVSTLNDASIR 588 (785)
T ss_pred cCCccccceeeeccCccccccc
Confidence 777665 676665544455543
No 2
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-55 Score=469.48 Aligned_cols=329 Identities=34% Similarity=0.551 Sum_probs=247.9
Q ss_pred HHHhhhccCCcceeEeeeeeeccCC-CCCCceeEEEEEecCceEEEEeC----------------------CCCCCCcC-
Q 006831 166 AAMQSAVKGKVQTIKQGYLSKRSSN-LRADWKRRFFVLDSRGLLYYYRK----------------------PWSWNSAA- 221 (629)
Q Consensus 166 ~~~~~~~~~~~~~iKqGyL~Krs~~-~~k~WkRRwFvL~~~glLyYy~~----------------------~~~~~~g~- 221 (629)
......+.|+.+++|||.|+||+++ +.+.||+.|+.|.++|.|.||.+ +++.|+..
T Consensus 290 ~~adtigsGRAIPIKQg~LlKrSgk~L~keWKKKYVtlcsnG~LtYh~sL~dYM~niHgKEiDL~~tTikvpGK~pplat 369 (749)
T KOG0705|consen 290 NHADTIGSGRAIPIKQGMLLKRSGKSLNKEWKKKYVTLCSNGVLTYHPSLGDYMKNIHGKEIDLLRTTIKVPGKRPPLAT 369 (749)
T ss_pred hhhhhhcCCcccchhhhhHHHhcchHHHHHHhhhheeeccCcceeecccHHHHHHhcccceeeeeeeeeeccCccCcccc
Confidence 3444567888899999999999988 34899999999999999999975 22222211
Q ss_pred ---CCcccccCCCC--------CCcc--ccccccccccccCCCccccc----------cc----eeeEeecccceeecCC
Q 006831 222 ---GSQSSIQRSNP--------SETS--QGLLSRWLSSHYHGGVHDEK----------SV----ARHTVNLLTSTIKPDA 274 (629)
Q Consensus 222 ---~~~~~~~~~~~--------~~~g--~g~l~~~~~~~~~g~v~d~~----------~~----~~~~i~l~~~~vk~~~ 274 (629)
..++....|+. ++.| +|+-. + .|++.+.. ++ ..+.-...+...+.
T Consensus 370 sa~ap~Ss~~~NGl~Kdm~~~rSd~Gl~ss~~~---S---pgsissaittspkl~pPpSp~~nkKkh~RKksTnskhn-- 441 (749)
T KOG0705|consen 370 SACAPSSSSKSNGLSKDMEPRRSDVGLGSSDCT---S---PGSISSAITTSPKLHPPPSPHANKKKHSRKKSTNSKHN-- 441 (749)
T ss_pred ccccccccccccccccccccccCCCCCCcccCC---C---CCCcccccccCccCCCCCCccchhhhhhhhccCCCCCC--
Confidence 11111111111 1111 11110 0 01221100 00 01111111222221
Q ss_pred CCCCCcceEEEeeCC-cEEEEEeCCHHHHHHHHHHHHHHHHHHhccCCccccccccccCCCCCCCCccccccccCCccCC
Q 006831 275 DQSDLRFCFRIISPT-KVYTLQAENTLDQMDWIEKINGVIASLLSFQTPERVNVKHCLSSGPKESFDRCFIRESGLLVDS 353 (629)
Q Consensus 275 d~~drrfcF~Iit~~-rty~LqAeSe~E~~~WI~aI~~aI~~~l~~~~~~~~~~~~~l~~~p~~s~~~~~~s~s~s~~~~ 353 (629)
| +..|||+|++.. .+|+|.|-+.+|++.||+||+..|...|+. ++....+.++
T Consensus 442 d--EEde~F~IVs~tgqtWhFeAtt~EERdaWvQai~sqIlaSlq~--cessk~Ks~~---------------------- 495 (749)
T KOG0705|consen 442 D--EEDECFEIVSNTGQTWHFEATTYEERDAWVQAIQSQILASLQS--CESSKSKSRL---------------------- 495 (749)
T ss_pred c--cccceEEEeccccchhhhhhcchhhHHHHHHHHHHHHHHHHhh--hhhhcchhcc----------------------
Confidence 1 336999999887 799999999999999999999999877653 4331111110
Q ss_pred CCCCccchhhcccccccCCCCcCCCcccchhhhhccccchHHHHHhccCCCCCCCCCCCCCCceecccceeEeccccccc
Q 006831 354 PYVDQTTIEEHASKNITGGDHLHSSKSLGDLEYIVKNEKPIDLLRRVYGNNKCADCGASEPDWASLNLGVLICIQCSGVH 433 (629)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~N~~CaDCg~~~p~w~s~n~Gv~lC~~CsgvH 433 (629)
++ + ...-+++.|+.++||..|+||+.++|.|||+|+|++|||+|||||
T Consensus 496 ----------------~s-----------q-----sea~a~qairn~rgn~~c~dc~~~n~~wAslnlg~l~cieCsgih 543 (749)
T KOG0705|consen 496 ----------------TS-----------Q-----SEAMALQAIRNMRGNSHCVDCGTPNPKWASLNLGVLMCIECSGIH 543 (749)
T ss_pred ----------------ch-----------h-----hhHHHHHHHhcCcCCceeeecCCCCcccccccCCeEEEEEchhhh
Confidence 00 0 022467899999999999999999999999999999999999999
Q ss_pred cccCcccceeeEeecCCCcCChhHHHHHhhcChhHHHHHHHhhhccCCCCCccccccCccccccccccccCCCCCCCCHH
Q 006831 434 RNLGVHISKVRSLTLDVKVWEPSVLNLFQSLGNIYANSVWEELLRIGNNSLTDERHMGFSRTDKQKRFIVRKPNPDDSIS 513 (629)
Q Consensus 434 R~LG~hiSkVrSl~lD~~~w~~~~l~~~~~~GN~~~N~i~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~~~ 513 (629)
|+||+|+|+||||.|| .|+.+.+.+|.++||+.||+|||..+.. ..||.++++++
T Consensus 544 r~lgt~lSrvr~LeLD--dWPvEl~~Vm~aiGN~~AN~vWE~~~~G-----------------------~~KPs~~s~RE 598 (749)
T KOG0705|consen 544 RNLGTHLSRVRSLELD--DWPVELLKVMSAIGNDLANSVWEGSSQG-----------------------QTKPSPDSSRE 598 (749)
T ss_pred hhhhhhhhhhhccccc--cCcHHHHHHHHHhhhhHHHHHhhhhccC-----------------------CcCCCccccHH
Confidence 9999999999999999 8999999999999999999999995543 47999999999
Q ss_pred HHHHHHHHHhccCcccccCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CccccCCCCCCCCcchHHhhhh
Q 006831 514 VKEQYIHAKYAEKIFVHKRKDHHHLLSVAQQLWESVRDNDKKAVYRQIICSEP--NVNAIHGQASYGKRLPLATVME 588 (629)
Q Consensus 514 ~re~fI~~KY~~k~f~~~~~~~~~~~~~~~~l~~av~~~d~~~~~~~l~~~ga--dvn~~~~~~~~~t~l~la~~~~ 588 (629)
+||+||++||++|.|..|.+..+ .+|.|||+.||.+.|+..++-+| ++|. .||.++|+.++.|+|||||+++
T Consensus 599 EkErwIr~KYeqklFLaPl~~te--~~lgqqLl~A~~~~Dl~t~~lLL-Ahg~~~e~~~t~~~~~grt~LHLa~~~g 672 (749)
T KOG0705|consen 599 EKERWIRAKYEQKLFLAPLPCTE--EPLGQQLLRAVAAEDLQTAILLL-AHGSREEVNETCGEGDGRTALHLAARKG 672 (749)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCC--CchHHHHHHHHHHHHHHHHHHHH-hccCchhhhccccCCCCcchhhhhhhhc
Confidence 99999999999999999999876 79999999999999999998555 5665 7888999999999999999988
No 3
>KOG0703 consensus Predicted GTPase-activating protein [Signal transduction mechanisms]
Probab=100.00 E-value=8.1e-39 Score=324.23 Aligned_cols=116 Identities=49% Similarity=0.884 Sum_probs=109.1
Q ss_pred ccchHHHHHhccCCCCCCCCCCCCCCceecccceeEeccccccccccCcccceeeEeecCCCcCChhHHHHHhhcChhHH
Q 006831 390 NEKPIDLLRRVYGNNKCADCGASEPDWASLNLGVLICIQCSGVHRNLGVHISKVRSLTLDVKVWEPSVLNLFQSLGNIYA 469 (629)
Q Consensus 390 ~~~~~~~l~~~p~N~~CaDCg~~~p~w~s~n~Gv~lC~~CsgvHR~LG~hiSkVrSl~lD~~~w~~~~l~~~~~~GN~~~ 469 (629)
+++.|..|.+.|+|+.|||||++.|+|||.|||||||+.|+||||+||||||||+|++|| .|++++|+.|+.+||.+|
T Consensus 12 ~~~~l~~Ll~~~~N~~CADC~a~~P~WaSwnlGvFiC~~C~giHR~lg~hiSkVkSv~LD--~W~~eqv~~m~~~GN~~a 89 (287)
T KOG0703|consen 12 NKRRLRELLREPDNKVCADCGAKGPRWASWNLGVFICLRCAGIHRSLGVHISKVKSVTLD--EWTDEQVDFMISMGNAKA 89 (287)
T ss_pred HHHHHHHHHcCcccCcccccCCCCCCeEEeecCeEEEeecccccccccchhheeeeeecc--ccCHHHHHHHHHHcchhh
Confidence 567888999999999999999999999999999999999999999999999999999999 899999999999999999
Q ss_pred HHHHHhhhccCCCCCccccccCccccccccccccCCCCCCCCHHHHHHHHHHHhccCcccccC
Q 006831 470 NSVWEELLRIGNNSLTDERHMGFSRTDKQKRFIVRKPNPDDSISVKEQYIHAKYAEKIFVHKR 532 (629)
Q Consensus 470 N~i~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~~~~re~fI~~KY~~k~f~~~~ 532 (629)
|++||+.+|.. +.+|.+++ ++|+|||+||+.|+|+.+.
T Consensus 90 n~~~ea~~p~~----------------------~~~p~~d~---~~e~FIR~KYE~kkf~~~~ 127 (287)
T KOG0703|consen 90 NSYYEAKLPDP----------------------FRRPGPDD---LVEQFIRDKYERKKFLDPE 127 (287)
T ss_pred hhhccccCCcc----------------------ccCCChHH---HHHHHHHHHHhhhhhccch
Confidence 99999999874 46887765 8999999999999999975
No 4
>PF01412 ArfGap: Putative GTPase activating protein for Arf; InterPro: IPR001164 This entry describes a family of small GTPase activating proteins, for example ARF1-directed GTPase-activating protein, the cycle control GTPase activating protein (GAP) GCS1 which is important for the regulation of the ADP ribosylation factor ARF, a member of the Ras superfamily of GTP-binding proteins []. The GTP-bound form of ARF is essential for the maintenance of normal Golgi morphology, it participates in recruitment of coat proteins which are required for budding and fission of membranes. Before the fusion with an acceptor compartment the membrane must be uncoated. This step required the hydrolysis of GTP associated to ARF. These proteins contain a characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) which displays some similarity to the C4-type GATA zinc finger. The ARFGAP domain display no obvious similarity to other GAP proteins. The 3D structure of the ARFGAP domain of the PYK2-associated protein beta has been solved []. It consists of a three-stranded beta-sheet surrounded by 5 alpha helices. The domain is organised around a central zinc atom which is coordinated by 4 cysteines. The ARFGAP domain is clearly unrelated to the other GAP proteins structures which are exclusively helical. Classical GAP proteins accelerate GTPase activity by supplying an arginine finger to the active site. The crystal structure of ARFGAP bound to ARF revealed that the ARFGAP domain does not supply an arginine to the active site which suggests a more indirect role of the ARFGAP domain in the GTPase hydrolysis []. The Rev protein of human immunodeficiency virus type 1 (HIV-1) facilitates nuclear export of unspliced and partly-spliced viral RNAs []. Rev contains an RNA-binding domain and an effector domain; the latter is believed to interact with a cellular cofactor required for the Rev response and hence HIV-1 replication. Human Rev interacting protein (hRIP) specifically interacts with the Rev effector. The amino acid sequence of hRIP is characterised by an N-terminal, C-4 class zinc finger motif.; GO: 0008060 ARF GTPase activator activity, 0008270 zinc ion binding, 0032312 regulation of ARF GTPase activity; PDB: 2P57_A 2CRR_A 2OWA_B 3O47_B 3DWD_A 1DCQ_A 2CRW_A 3MDB_D 3FEH_A 3LJU_X ....
Probab=100.00 E-value=6.6e-37 Score=278.08 Aligned_cols=115 Identities=47% Similarity=0.900 Sum_probs=96.0
Q ss_pred chHHHHHhccCCCCCCCCCCCCCCceecccceeEeccccccccccCcccceeeEeecCCCcCChhHHHHHhhcChhHHHH
Q 006831 392 KPIDLLRRVYGNNKCADCGASEPDWASLNLGVLICIQCSGVHRNLGVHISKVRSLTLDVKVWEPSVLNLFQSLGNIYANS 471 (629)
Q Consensus 392 ~~~~~l~~~p~N~~CaDCg~~~p~w~s~n~Gv~lC~~CsgvHR~LG~hiSkVrSl~lD~~~w~~~~l~~~~~~GN~~~N~ 471 (629)
+.|+.|++.|+|+.|||||+++|+|||+|+|||||+.|||+||+||+|||+||||+|| .|++++|++|+.+||..+|+
T Consensus 2 ~~l~~l~~~~~N~~CaDCg~~~p~w~s~~~GiflC~~Cag~HR~lg~~is~VkSi~~d--~w~~~ev~~~~~~GN~~~n~ 79 (116)
T PF01412_consen 2 KILRELLKKPGNKVCADCGAPNPTWASLNYGIFLCLECAGIHRSLGVHISRVKSITMD--NWSPEEVQRMREGGNKRANS 79 (116)
T ss_dssp HHHHHHHCSTTCTB-TTT-SBS--EEETTTTEEE-HHHHHHHHHHTTTT--EEETTTS-----HHHHHHHHHSHHHHHHH
T ss_pred HHHHHHHcCcCcCcCCCCCCCCCCEEEeecChhhhHHHHHHHHHhcccchhccccccC--CCCHHHHHHHHHHChHHHHH
Confidence 4678899999999999999999999999999999999999999999999999999999 79999999999999999999
Q ss_pred HHHhhhccCCCCCccccccCccccccccccccCCCCCCCCHHHHHHHHHHHhccCccccc
Q 006831 472 VWEELLRIGNNSLTDERHMGFSRTDKQKRFIVRKPNPDDSISVKEQYIHAKYAEKIFVHK 531 (629)
Q Consensus 472 i~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~~~~re~fI~~KY~~k~f~~~ 531 (629)
+||++.++ ..+|.++++.+.+++||++||++++|+.+
T Consensus 80 ~~e~~~~~-----------------------~~~~~~~~~~~~~~~fI~~KY~~k~f~~~ 116 (116)
T PF01412_consen 80 IWEANSPP-----------------------PKKPPPSSDQEKREQFIRAKYVEKAFISK 116 (116)
T ss_dssp HHTTTSTT-----------------------TTTHCTTSHHHHHHHHHHHHHTTHTTS-C
T ss_pred HHHcCCCC-----------------------CCCCCCCCcHHHHHHHHHHHHHhhhhccC
Confidence 99999332 25677778889999999999999999864
No 5
>smart00105 ArfGap Putative GTP-ase activating proteins for the small GTPase, ARF. Putative zinc fingers with GTPase activating proteins (GAPs) towards the small GTPase, Arf. The GAP of ARD1 stimulates GTPase hydrolysis for ARD1 but not ARFs.
Probab=100.00 E-value=8.2e-36 Score=269.20 Aligned_cols=110 Identities=55% Similarity=0.918 Sum_probs=101.0
Q ss_pred cCCCCCCCCCCCCCCceecccceeEeccccccccccCcccceeeEeecCCCcCChhHHHHHhhcChhHHHHHHHhhhccC
Q 006831 401 YGNNKCADCGASEPDWASLNLGVLICIQCSGVHRNLGVHISKVRSLTLDVKVWEPSVLNLFQSLGNIYANSVWEELLRIG 480 (629)
Q Consensus 401 p~N~~CaDCg~~~p~w~s~n~Gv~lC~~CsgvHR~LG~hiSkVrSl~lD~~~w~~~~l~~~~~~GN~~~N~i~e~~l~~~ 480 (629)
|+|+.|||||+++|+|||+|+|||||++|||+||+||+|||+||||+|| .|++++|++|+.+||.++|++||+++++.
T Consensus 1 ~~N~~CaDC~~~~p~w~s~~~GifvC~~CsgiHR~lg~his~VkSl~md--~w~~~~i~~~~~~GN~~~n~~~e~~~~~~ 78 (112)
T smart00105 1 PGNKKCFDCGAPNPTWASVNLGVFLCIECSGIHRSLGVHISKVRSLTLD--TWTEEELRLLQKGGNENANSIWESNLDDF 78 (112)
T ss_pred CCCCcccCCCCCCCCcEEeccceeEhHHhHHHHHhcCCCcCeeeecccC--CCCHHHHHHHHHhhhHHHHHHHHhhCCcc
Confidence 6899999999999999999999999999999999999999999999999 79999999999999999999999999873
Q ss_pred CCCCccccccCccccccccccccCCCCCCCCHHHHHHHHHHHhccCcccccCCC
Q 006831 481 NNSLTDERHMGFSRTDKQKRFIVRKPNPDDSISVKEQYIHAKYAEKIFVHKRKD 534 (629)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~~~~re~fI~~KY~~k~f~~~~~~ 534 (629)
..+|.+.+....+++||++||++|+|+.+.+.
T Consensus 79 ----------------------~~~~~~~~~~~~~~~fI~~KY~~k~f~~~~~~ 110 (112)
T smart00105 79 ----------------------SLKPPDSDDQQKYESFIAAKYEEKLFVPPESA 110 (112)
T ss_pred ----------------------ccCCCCCchHHHHHHHHHHHHHhhhccccccC
Confidence 13444455678999999999999999998765
No 6
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=100.00 E-value=2.1e-35 Score=325.89 Aligned_cols=277 Identities=30% Similarity=0.421 Sum_probs=226.2
Q ss_pred hhccCCcceeEeeeeeeccCCCCCCceeEEEEEecCceEEEEeCCCCCCCcCCCcccccCCCCCCccccccccccccccC
Q 006831 170 SAVKGKVQTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYH 249 (629)
Q Consensus 170 ~~~~~~~~~iKqGyL~Krs~~~~k~WkRRwFvL~~~glLyYy~~~~~~~~g~~~~~~~~~~~~~~~g~g~l~~~~~~~~~ 249 (629)
+++....++.+.|||.-|+-+. |-|.+|- .+.+..|++..+.+.| .|
T Consensus 184 ~ap~pp~pP~raG~lelrg~ka-----k~f~~vs-p~~vqL~knlq~f~lg----------------ig----------- 230 (1186)
T KOG1117|consen 184 SAPPPPVPPPRAGWLELRGFKA-----KLFVAVS-PERVQLYKNLQSFPLG----------------IG----------- 230 (1186)
T ss_pred cCCCCCCCCCCccchhcccccc-----ceeEEec-CceeeeecccccccCC----------------ce-----------
Confidence 3444556789999999885332 3455554 5556667766554321 11
Q ss_pred CCccccccceeeEeecccceeecCCCCCCCcceEEEeeCCcEEEEEeCCHHHHHHHHHHHHHHHHHHhccCCcccccccc
Q 006831 250 GGVHDEKSVARHTVNLLTSTIKPDADQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVIASLLSFQTPERVNVKH 329 (629)
Q Consensus 250 g~v~d~~~~~~~~i~l~~~~vk~~~d~~drrfcF~Iit~~rty~LqAeSe~E~~~WI~aI~~aI~~~l~~~~~~~~~~~~ 329 (629)
...|.+..|+++.. ++ ..|+++||.|.|-|.|+++.+++.|++|++.+|+..++.
T Consensus 231 ----------it~I~m~~~nvk~v----dr-~sfdl~Tp~r~fsftaese~erq~w~ea~q~siAeTlSd---------- 285 (1186)
T KOG1117|consen 231 ----------ITFIYMEVSNVKEV----DR-RSFDLNTPYREFSFTAESETERQIWGEAPQPSIAETLSD---------- 285 (1186)
T ss_pred ----------eEEEeccccccccc----cc-ceeccCCceeeeeeeeccchhhhhhhhccCcccccccCh----------
Confidence 23355566777753 33 679999999999999999999999999998887654421
Q ss_pred ccCCCCCCCCccccccccCCccCCCCCCccchhhcccccccCCCCcCCCcccchhhhhccccchHHHHHhccCCCCCCCC
Q 006831 330 CLSSGPKESFDRCFIRESGLLVDSPYVDQTTIEEHASKNITGGDHLHSSKSLGDLEYIVKNEKPIDLLRRVYGNNKCADC 409 (629)
Q Consensus 330 ~l~~~p~~s~~~~~~s~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~N~~CaDC 409 (629)
-.....++....|..||||
T Consensus 286 -------------------------------------------------------------~evaeriW~ne~nr~cadC 304 (1186)
T KOG1117|consen 286 -------------------------------------------------------------YEVAERIWLNEENRECADC 304 (1186)
T ss_pred -------------------------------------------------------------HHHHHHHHhcccccccccc
Confidence 0122456777899999999
Q ss_pred CCCCCCceecccceeEeccccccccccCcccceeeEeecCCCcCChhHHHHHhhcChhHHHHHHHhhhccCCCCCccccc
Q 006831 410 GASEPDWASLNLGVLICIQCSGVHRNLGVHISKVRSLTLDVKVWEPSVLNLFQSLGNIYANSVWEELLRIGNNSLTDERH 489 (629)
Q Consensus 410 g~~~p~w~s~n~Gv~lC~~CsgvHR~LG~hiSkVrSl~lD~~~w~~~~l~~~~~~GN~~~N~i~e~~l~~~~~~~~~~~~ 489 (629)
|++.|+|||+||+|+||-.|+|-||+||.-+||||||+||.++|+.+.+++|..+||.++|++|-+++++.+..+
T Consensus 305 ~ssrPdwasiNL~vvIck~caGqhrslgs~dSkvrslkmd~svwsneliElfivlgn~~an~Fwa~nl~~~e~lh----- 379 (1186)
T KOG1117|consen 305 GSSRPDWASINLCVVICKPCAGQHRSLGSGDSKVRSLKMDPSVWSNELIELFIVLGNPRANRFWAGNLPPNEHLH----- 379 (1186)
T ss_pred CCCCCcccccccceEEcccCCCccccCCCccccccccccCcccccchhhhhheeecCcccccccccCCCCccccC-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999976443
Q ss_pred cCccccccccccccCCCCCCCCHHHHHHHHHHHhccCcccccCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhCCCCcc
Q 006831 490 MGFSRTDKQKRFIVRKPNPDDSISVKEQYIHAKYAEKIFVHKRKDHHHLLSVAQQLWESVRDNDKKAVYRQIICSEPNVN 569 (629)
Q Consensus 490 ~~~~~~~~~~~~~~~kP~~~~~~~~re~fI~~KY~~k~f~~~~~~~~~~~~~~~~l~~av~~~d~~~~~~~l~~~gadvn 569 (629)
++.+.+.|.+||.+||.+..|...++......++.+.|+.||...|+.....+| .+|||||
T Consensus 380 ------------------~dssp~~r~~fi~~Kykeg~fRk~~~~~~~~sel~kalcaaV~~pdl~etma~l-~sga~v~ 440 (1186)
T KOG1117|consen 380 ------------------PDSSPSTRRQFIKEKYKEGKFRKEHPVEICSSELPKALCAAVNVPDLLETMALL-FSGADVM 440 (1186)
T ss_pred ------------------CCCCcchhhhHHHHHhhccccccccccccccccCChhheeeeeCCchhhHHHHh-hccccce
Confidence 334445689999999999999999988776688999999999999999988777 4699999
Q ss_pred ccCCCCCCCCcchHHhhhhh
Q 006831 570 AIHGQASYGKRLPLATVMEM 589 (629)
Q Consensus 570 ~~~~~~~~~t~l~la~~~~~ 589 (629)
++.|+....||+.+|...||
T Consensus 441 ~f~gd~~~~tp~~~a~~aGq 460 (1186)
T KOG1117|consen 441 CFTGDPVHSTPYLLAKKAGQ 460 (1186)
T ss_pred eecCCCCCCCCcchhhcccc
Confidence 99999999999999998883
No 7
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=100.00 E-value=2.8e-35 Score=310.27 Aligned_cols=170 Identities=34% Similarity=0.582 Sum_probs=152.4
Q ss_pred ccCCCCCCCCCCCCCCceecccceeEeccccccccccCcccceeeEeecCCCcCChhHHHHHhhcChhHHHHHHHhhhcc
Q 006831 400 VYGNNKCADCGASEPDWASLNLGVLICIQCSGVHRNLGVHISKVRSLTLDVKVWEPSVLNLFQSLGNIYANSVWEELLRI 479 (629)
Q Consensus 400 ~p~N~~CaDCg~~~p~w~s~n~Gv~lC~~CsgvHR~LG~hiSkVrSl~lD~~~w~~~~l~~~~~~GN~~~N~i~e~~l~~ 479 (629)
.+.-+.|+|||+++|.|||||-|+|||.+|+.|||+||.|||.||+|.-. .|+|+.|++...+.|..+|+|||+.|.+
T Consensus 5 ~l~~evC~DC~~~dp~WASvnrGt~lC~eCcsvHrsLGrhIS~vrhLR~s--~W~pt~l~~V~tLn~~gaNsIWEh~Lld 82 (669)
T KOG0818|consen 5 LLSSEVCADCSGPDPSWASVNRGTFLCDECCSVHRSLGRHISQVRHLRHT--PWPPTLLQMVETLNNNGANSIWEHSLLD 82 (669)
T ss_pred chhhhhhcccCCCCCcceeecCceEehHhhhHHHhhhcchHHHHHHhccC--CCCHHHHHHHHHHHhcCcchhhhhhccC
Confidence 34567999999999999999999999999999999999999999999987 8999999999999999999999999988
Q ss_pred CCCCCccccccCccccccccccccCCCCCCCCH-HHHHHHHHHHhccCcccccCCC-Cc---chhhHHHHHHHHHhcCCH
Q 006831 480 GNNSLTDERHMGFSRTDKQKRFIVRKPNPDDSI-SVKEQYIHAKYAEKIFVHKRKD-HH---HLLSVAQQLWESVRDNDK 554 (629)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~~-~~re~fI~~KY~~k~f~~~~~~-~~---~~~~~~~~l~~av~~~d~ 554 (629)
+.+... .++||+|.|+. +.|++||++||+...|+.+.+. ++ ...+|+.||+.+||++++
T Consensus 83 ~st~~s----------------g~rk~~pqD~~Hp~K~eFIkaKy~~LtFv~~~~~rDdD~~~~~~LsrQLhasvRt~nl 146 (669)
T KOG0818|consen 83 PATIMS----------------GRRKANPQDKVHPNKAEFIRAKYQMLAFVHRLPCRDDDSVTAKDLSKQLHSSVRTGNL 146 (669)
T ss_pred chhhhc----------------ccCCCCCcCCCCccHHHHHHHHHHheeeeccCCCCCcchhhHHHHHHHHHHHhhcccH
Confidence 654321 26899999987 5999999999999999996553 22 346899999999999999
Q ss_pred HHHHHHHHhCCCCccccCCCCCCCCcchHHhhhhh
Q 006831 555 KAVYRQIICSEPNVNAIHGQASYGKRLPLATVMEM 589 (629)
Q Consensus 555 ~~~~~~l~~~gadvn~~~~~~~~~t~l~la~~~~~ 589 (629)
+..+|+| ..|||+|++++++ +.||||+|+..||
T Consensus 147 et~LRll-~lGA~~N~~hpek-g~TpLHvAAk~Gq 179 (669)
T KOG0818|consen 147 ETCLRLL-SLGAQANFFHPEK-GNTPLHVAAKAGQ 179 (669)
T ss_pred HHHHHHH-HcccccCCCCccc-CCchhHHHHhccc
Confidence 9999998 5799999999986 7999999999995
No 8
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=99.98 E-value=9.2e-32 Score=288.11 Aligned_cols=233 Identities=23% Similarity=0.396 Sum_probs=192.6
Q ss_pred hhhhhhHhHHHHHHHHHHhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 006831 7 TVAFNGDGNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRF 86 (629)
Q Consensus 7 ~~~Fe~~q~kyd~~~~ky~slsk~k~~~~~~E~a~eL~~aRk~f~~asldyv~~l~~vq~kk~~e~le~l~~~~~a~~~f 86 (629)
.++|||.+++|++.|+|++.|+.+| ++.++|++.|+...|+.|-++||+||+++++||++|+|+|||++++|+++++.|
T Consensus 131 KkKydKe~ekfy~~LekHLhLSskk-esqlqeAD~Qvd~~r~nFfe~SL~YV~~vQeVQErk~FefVEpllafl~slf~f 209 (812)
T KOG1451|consen 131 KKKYDKESEKFYQTLEKHLHLSSKK-ESQLQEADAQVDTQRKNFFEASLQYVAEVQEVQERKRFEFVEPLLAFLYSLFSF 209 (812)
T ss_pred HhhhhhhhHHHHHHHHHHhccccch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 3789999999999999999999998 777899999999999999999999999999999999999999999999999999
Q ss_pred HhhhhHhhhhchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCCCchHHHHH
Q 006831 87 FKQGYELLHQMEPFINQVLAYAQQSRECSDYEQASLHQRMQDYLKQIDRESRQCLNGSLGSPSGDNVKPFPRNSNKLIEA 166 (629)
Q Consensus 87 f~~g~e~~~~l~p~~~~l~~~~q~~r~~~~~~~~~L~~~m~~~k~qi~~~~~~s~~~~~~~ps~~~~~~~~~~~~k~~~~ 166 (629)
||.|+++.+||.||.++|+..+|++|+.++.++.+++++++++++ +|..+
T Consensus 210 ~h~g~el~qDF~pfk~qlq~s~QnTrn~f~~Tr~E~EeLkKkmke---------------~p~e~--------------- 259 (812)
T KOG1451|consen 210 FHVGSELHQDFKPFKDQLQTSVQNTRNNFNATRAEAEELKKKMKE---------------SPTED--------------- 259 (812)
T ss_pred hhhhHHHHhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHHhh---------------Ccccc---------------
Confidence 999999999999999999999999999999999998888877653 22211
Q ss_pred HHhhhccCCcceeEeeeeeeccCC-CCCCceeEEEEEecCceEEEEeCCCCCCCcCCCcccccCCCCCCccccccccccc
Q 006831 167 AMQSAVKGKVQTIKQGYLSKRSSN-LRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLS 245 (629)
Q Consensus 167 ~~~~~~~~~~~~iKqGyL~Krs~~-~~k~WkRRwFvL~~~glLyYy~~~~~~~~g~~~~~~~~~~~~~~~g~g~l~~~~~ 245 (629)
+...+.+++||||.+.+. +.+.|.+.||+...+...+- |.+.. +.+|
T Consensus 260 ------k~p~p~t~eGYlY~QEK~~~g~sWvKyYC~Y~retk~~T-------------Mvp~~----qk~g--------- 307 (812)
T KOG1451|consen 260 ------KRPTPSTKEGYLYMQEKSKIGKSWVKYYCVYSRETKIFT-------------MVPAN----QKTG--------- 307 (812)
T ss_pred ------cCCCCcccceeeeehhhhhccchhhhheeEeecccceEE-------------Eeecc----cCCC---------
Confidence 011256789999998766 55899999999875443221 11111 0000
Q ss_pred cccCCCccccccceeeEeecccceeecCCCCCCCcceEEEeeCCc--EEEEEeCCHHHHHHHHHHHHHH
Q 006831 246 SHYHGGVHDEKSVARHTVNLLTSTIKPDADQSDLRFCFRIISPTK--VYTLQAENTLDQMDWIEKINGV 312 (629)
Q Consensus 246 ~~~~g~v~d~~~~~~~~i~l~~~~vk~~~d~~drrfcF~Iit~~r--ty~LqAeSe~E~~~WI~aI~~a 312 (629)
+ +.....++.+..|+.+. .|.+|+||||+|.+.+| ++++||-|++|+..||+|+.++
T Consensus 308 ----~-----k~g~~~~~~lKsC~RRk-tdSIdKRFCFDve~~erpgviTmQALSE~drrlWmeAMDG~ 366 (812)
T KOG1451|consen 308 ----T-----KMGQTATFKLKSCSRRK-TDSIDKRFCFDVEVEERPGVITMQALSEKDRRLWMEAMDGA 366 (812)
T ss_pred ----C-----cCCCcceEEehhhccCc-ccccccceeeeeeecccCCeeehHhhhhhHHHHHHHHhcCC
Confidence 0 01122457778888877 58899999999999885 8999999999999999999765
No 9
>COG5347 GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion]
Probab=99.97 E-value=3.9e-32 Score=283.33 Aligned_cols=118 Identities=47% Similarity=0.763 Sum_probs=105.0
Q ss_pred cchHHHHHhccCCCCCCCCCCCCCCceecccceeEeccccccccccCcccceeeEeecCCCcCChhHHHHHhhcChhHHH
Q 006831 391 EKPIDLLRRVYGNNKCADCGASEPDWASLNLGVLICIQCSGVHRNLGVHISKVRSLTLDVKVWEPSVLNLFQSLGNIYAN 470 (629)
Q Consensus 391 ~~~~~~l~~~p~N~~CaDCg~~~p~w~s~n~Gv~lC~~CsgvHR~LG~hiSkVrSl~lD~~~w~~~~l~~~~~~GN~~~N 470 (629)
...+..|+..++|++|||||+++|+|||+|||||||++||||||+||||||+||||+|| .|++++|.+|..+||.+||
T Consensus 8 ~~~l~~l~~~~~Nk~CaDCga~~P~W~S~nlGvfiCi~CagvHRsLGvhiS~VKSitLD--~wt~~~l~~m~~gGN~~a~ 85 (319)
T COG5347 8 RKLLKLLKSDSSNKKCADCGAPNPTWASVNLGVFLCIDCAGVHRSLGVHISKVKSLTLD--NWTEEELRRMEVGGNSNAN 85 (319)
T ss_pred HHHHHHHhhccccCccccCCCCCCceEecccCeEEEeecchhhhccccceeeeeeeecc--cCCHHHHHHHHHhcchhhh
Confidence 45677889999999999999999999999999999999999999999999999999999 7999999999999999999
Q ss_pred HHHHhhhccCCCCCccccccCccccccccccccCCCCCCCCHHHHHHHHHHHhccCccccc
Q 006831 471 SVWEELLRIGNNSLTDERHMGFSRTDKQKRFIVRKPNPDDSISVKEQYIHAKYAEKIFVHK 531 (629)
Q Consensus 471 ~i~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~~~~re~fI~~KY~~k~f~~~ 531 (629)
.+||.++-... ..++.......++++||+.||.+++|+..
T Consensus 86 ~~~e~~~~~~~---------------------~~~~k~~yd~~v~~~y~~~ky~~~~~~~~ 125 (319)
T COG5347 86 RFYEKNLLDQL---------------------LLPIKAKYDSSVAKKYIRKKYELKKFIDD 125 (319)
T ss_pred hHhccCCCccc---------------------ccccccccCHHHHHHHHHHHHHhhhcccc
Confidence 99999876521 02333444557899999999999999996
No 10
>PLN03119 putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional
Probab=99.96 E-value=1.3e-30 Score=280.50 Aligned_cols=124 Identities=19% Similarity=0.422 Sum_probs=108.1
Q ss_pred hhccccchHHHHHhccCCCCCCCCCCCCCCceecccceeEeccccccccccCcccceeeEeecCCCcCChhHHHHHhhcC
Q 006831 386 YIVKNEKPIDLLRRVYGNNKCADCGASEPDWASLNLGVLICIQCSGVHRNLGVHISKVRSLTLDVKVWEPSVLNLFQSLG 465 (629)
Q Consensus 386 ~~~~~~~~~~~l~~~p~N~~CaDCg~~~p~w~s~n~Gv~lC~~CsgvHR~LG~hiSkVrSl~lD~~~w~~~~l~~~~~~G 465 (629)
...+++++|+.|.+.|+|+.|||||+.+|.|||+|+|||||++||||||+|| +|||||+|| .|++++|++|+.+|
T Consensus 6 ~qERnekILreLlklPgNk~CADCgs~~P~WASiNlGIFICi~CSGIHRsLG---hRVKSLSLD--kWT~EEVe~Mk~gG 80 (648)
T PLN03119 6 EEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTTFWTFVCMACSGIHREFT---HRVKSVSMS--KFTSKEVEVLQNGG 80 (648)
T ss_pred HHHHHHHHHHHHhhCcCCCccccCCCCCCCceeeccceEEeccchhhhccCC---ceeeccccC--CCCHHHHHHHHHhc
Confidence 3456788999999999999999999999999999999999999999999998 499999999 79999999999999
Q ss_pred hhHHHHHHHhhhccCCCCCccccccCccccccccccccCCCCCCCCHHHHHHHHHHHhccCcccccCCCCc
Q 006831 466 NIYANSVWEELLRIGNNSLTDERHMGFSRTDKQKRFIVRKPNPDDSISVKEQYIHAKYAEKIFVHKRKDHH 536 (629)
Q Consensus 466 N~~~N~i~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~~~~re~fI~~KY~~k~f~~~~~~~~ 536 (629)
|.++|+|||++|++.. .++...+....+++||++||++|+|+.+...+.
T Consensus 81 N~~AN~iyeanw~~~~----------------------~~~P~~sD~e~lr~FIR~KYVeKRF~~~~~~d~ 129 (648)
T PLN03119 81 NQRAREIYLKNWDHQR----------------------QRLPENSNAERVREFIKNVYVQKKYAGANDADK 129 (648)
T ss_pred hHHHHHHHHhhccccc----------------------CCCCCCccHHHHHHHHHHHHhhhhccCcCCCCC
Confidence 9999999999998631 122223345667899999999999999976543
No 11
>PLN03131 hypothetical protein; Provisional
Probab=99.96 E-value=1.9e-30 Score=281.35 Aligned_cols=123 Identities=24% Similarity=0.483 Sum_probs=107.9
Q ss_pred hccccchHHHHHhccCCCCCCCCCCCCCCceecccceeEeccccccccccCcccceeeEeecCCCcCChhHHHHHhhcCh
Q 006831 387 IVKNEKPIDLLRRVYGNNKCADCGASEPDWASLNLGVLICIQCSGVHRNLGVHISKVRSLTLDVKVWEPSVLNLFQSLGN 466 (629)
Q Consensus 387 ~~~~~~~~~~l~~~p~N~~CaDCg~~~p~w~s~n~Gv~lC~~CsgvHR~LG~hiSkVrSl~lD~~~w~~~~l~~~~~~GN 466 (629)
..++++.|+.|.+.|+|+.|||||+++|.|||+|||||||++||||||+|| | |||||+|| .|++++|++|+.+||
T Consensus 7 qErnekiLreLlk~PgNk~CADCga~~P~WASiNlGIFICi~CSGIHRsLg-h--RVKSVTLD--~WtdeEV~~Mk~gGN 81 (705)
T PLN03131 7 EERNEKIIRGLMKLPPNRRCINCNSLGPQFVCTNFWTFICMTCSGIHREFT-H--RVKSVSMS--KFTSQDVEALQNGGN 81 (705)
T ss_pred HHHHHHHHHHHhhCcCCCccccCCCCCCCeeEeccceEEchhchhhhcccC-c--ccccccCC--CCCHHHHHHHHHhcc
Confidence 345788999999999999999999999999999999999999999999998 4 99999999 799999999999999
Q ss_pred hHHHHHHHhhhccCCCCCccccccCccccccccccccCCCCCCCCHHHHHHHHHHHhccCcccccCCCCc
Q 006831 467 IYANSVWEELLRIGNNSLTDERHMGFSRTDKQKRFIVRKPNPDDSISVKEQYIHAKYAEKIFVHKRKDHH 536 (629)
Q Consensus 467 ~~~N~i~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~~~~re~fI~~KY~~k~f~~~~~~~~ 536 (629)
.++|+|||++|++.. ...| ..+....+++||+.||++|+|+.+...+.
T Consensus 82 ~~AN~iyeanwd~~r---------------------~~lP-~~sd~ekrr~FIR~KYVeKRFa~~~s~d~ 129 (705)
T PLN03131 82 QRAREIYLKDWDQQR---------------------QRLP-DNSKVDKIREFIKDIYVDKKYAGGKTHDK 129 (705)
T ss_pred HHHHHHHHhhccccc---------------------CCCC-CCccHHHHHHHHHHHHhhhhhhcCCCCCC
Confidence 999999999997631 1223 23445667899999999999999986554
No 12
>PLN03114 ADP-ribosylation factor GTPase-activating protein AGD10; Provisional
Probab=99.93 E-value=3.2e-26 Score=235.89 Aligned_cols=118 Identities=32% Similarity=0.499 Sum_probs=98.3
Q ss_pred chHHHHHhccCCCCCCCCCCCCCCceecccceeEeccccccccccCcccceeeEeecCCCcCChhHHHHHhhcChhHHHH
Q 006831 392 KPIDLLRRVYGNNKCADCGASEPDWASLNLGVLICIQCSGVHRNLGVHISKVRSLTLDVKVWEPSVLNLFQSLGNIYANS 471 (629)
Q Consensus 392 ~~~~~l~~~p~N~~CaDCg~~~p~w~s~n~Gv~lC~~CsgvHR~LG~hiSkVrSl~lD~~~w~~~~l~~~~~~GN~~~N~ 471 (629)
+.++.|+..|+|+.|+|||+++|.|+|+|+|||||++||||||+||||||+|||++|| .|++++|.+|+.+||.++|.
T Consensus 11 ~vfrkL~~kPgNk~CaDCga~nPtWASvn~GIFLCl~CSGVHRsLGvHISfVRSltLD--~Ws~eqL~~Mk~GGN~rA~~ 88 (395)
T PLN03114 11 SVFKKLKAKSDNKICFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLD--SWSSEQLKMMIYGGNNRAQV 88 (395)
T ss_pred HHHHHHHhCcCCCcCccCCCCCCCceeeccceeehhhhhHhhccCCCCCceeecccCC--CCCHHHHHHHHHhcCHHHHH
Confidence 5678899999999999999999999999999999999999999999999999999999 79999999999999999999
Q ss_pred HHHhhhccCCCCCccccccCccccccccccccCCCCCCCCHHHHHHHHHHHhccCccccc
Q 006831 472 VWEELLRIGNNSLTDERHMGFSRTDKQKRFIVRKPNPDDSISVKEQYIHAKYAEKIFVHK 531 (629)
Q Consensus 472 i~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~~~~re~fI~~KY~~k~f~~~ 531 (629)
+|+...-... . ..+-.-.+....+-+-+.+|++++.+...
T Consensus 89 fF~qhG~~~~------~--------------~~~~KY~S~aA~~Yre~L~keVa~~~a~~ 128 (395)
T PLN03114 89 FFKQYGWSDG------G--------------KTEAKYTSRAADLYKQILAKEVAKSKAEE 128 (395)
T ss_pred HHHHcCCCCC------C--------------CcccccCCHHHHHHHHHHHHHHHHhhhcc
Confidence 9986532110 0 01111233445566669999999988844
No 13
>KOG0706 consensus Predicted GTPase-activating protein [Signal transduction mechanisms]
Probab=99.91 E-value=2e-25 Score=235.57 Aligned_cols=84 Identities=45% Similarity=0.784 Sum_probs=80.5
Q ss_pred cchHHHHHhccCCCCCCCCCCCCCCceecccceeEeccccccccccCcccceeeEeecCCCcCChhHHHHHhhcChhHHH
Q 006831 391 EKPIDLLRRVYGNNKCADCGASEPDWASLNLGVLICIQCSGVHRNLGVHISKVRSLTLDVKVWEPSVLNLFQSLGNIYAN 470 (629)
Q Consensus 391 ~~~~~~l~~~p~N~~CaDCg~~~p~w~s~n~Gv~lC~~CsgvHR~LG~hiSkVrSl~lD~~~w~~~~l~~~~~~GN~~~N 470 (629)
+..+..|+..|.|++|+|||+++|+|+|++|||||||+||+|||+||||||+|||..|| .|+..+|..|+-.||.+|+
T Consensus 11 ~~vfkkLRs~~~NKvCFDCgAknPtWaSVTYGIFLCiDCSAvHRnLGVHiSFVRSTnLD--sWs~~qLR~M~~GGN~nA~ 88 (454)
T KOG0706|consen 11 QTVFKKLRSQSENKVCFDCGAKNPTWASVTYGIFLCIDCSAVHRNLGVHISFVRSTNLD--SWSWEQLRRMQVGGNANAR 88 (454)
T ss_pred HHHHHHHhcCCCCceecccCCCCCCceeecceEEEEEecchhhhccccceEEEeecccc--cCCHHHHhHhhhcCchhHH
Confidence 45778999999999999999999999999999999999999999999999999999999 6999999999999999999
Q ss_pred HHHHhh
Q 006831 471 SVWEEL 476 (629)
Q Consensus 471 ~i~e~~ 476 (629)
.+++.+
T Consensus 89 ~FFkqh 94 (454)
T KOG0706|consen 89 VFFKQH 94 (454)
T ss_pred HHHHHc
Confidence 999765
No 14
>KOG0704 consensus ADP-ribosylation factor GTPase activator [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.91 E-value=5.6e-25 Score=225.15 Aligned_cols=82 Identities=40% Similarity=0.752 Sum_probs=74.8
Q ss_pred hHHHHHhccCCCCCCCCCCCCCCceecccceeEeccccccccccCcccceeeEeecCCCcCChhHHHHHhhcChhHHHHH
Q 006831 393 PIDLLRRVYGNNKCADCGASEPDWASLNLGVLICIQCSGVHRNLGVHISKVRSLTLDVKVWEPSVLNLFQSLGNIYANSV 472 (629)
Q Consensus 393 ~~~~l~~~p~N~~CaDCg~~~p~w~s~n~Gv~lC~~CsgvHR~LG~hiSkVrSl~lD~~~w~~~~l~~~~~~GN~~~N~i 472 (629)
.|..++...+|+.|.||++++|.|||++||||||.+|||+||.||||||.||||||| .|.+.+|+.|.+.||.+++.+
T Consensus 9 ~L~~lkp~deNk~CfeC~a~NPQWvSvsyGIfICLECSG~HRgLGVhiSFVRSVTMD--~wkeiel~kMeaGGN~~~~eF 86 (386)
T KOG0704|consen 9 VLLELKPQDENKKCFECGAPNPQWVSVSYGIFICLECSGKHRGLGVHISFVRSVTMD--KWKEIELKKMEAGGNERFREF 86 (386)
T ss_pred HHHhcCccccCCceeecCCCCCCeEeecccEEEEEecCCcccccceeeEEEEeeecc--cccHHHHHHHHhccchhHHHH
Confidence 334444444999999999999999999999999999999999999999999999999 799999999999999999999
Q ss_pred HHhh
Q 006831 473 WEEL 476 (629)
Q Consensus 473 ~e~~ 476 (629)
.+..
T Consensus 87 L~s~ 90 (386)
T KOG0704|consen 87 LSSQ 90 (386)
T ss_pred HhhC
Confidence 8754
No 15
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.88 E-value=2.1e-22 Score=200.11 Aligned_cols=103 Identities=25% Similarity=0.333 Sum_probs=97.0
Q ss_pred hhhhhhHhHHHHHHHHHHhcccCCCCcchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 006831 7 TVAFNGDGNFVLQAREKFLSLRKSTRMDVA-VVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLR 85 (629)
Q Consensus 7 ~~~Fe~~q~kyd~~~~ky~slsk~k~~~~~-~E~a~eL~~aRk~f~~asldyv~~l~~vq~kk~~e~le~l~~~~~a~~~ 85 (629)
-++||+++++||++++||++++|+|+.+.+ +|++++|..+|+.|++++||||.+||+||+||+|+||++|++||+||++
T Consensus 111 kK~FdK~s~~~d~al~K~~~l~k~k~~~~~~~Ea~~~l~~~R~~F~~~~ldYv~~ln~iq~kKk~e~Le~ll~~m~A~~t 190 (215)
T cd07601 111 KELFKAASNDHDGVLSKYSRLSKKRENTKVKIEVNDEVYACRKKQHQTAMNYYCALNLLQYKKTTALLEPMIGYLQAQIA 190 (215)
T ss_pred HHHHHHHhHHHHHHHHHHhhCCcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999854444 7999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhHhhh-hchHHHHHHHHHHH
Q 006831 86 FFKQGYELLH-QMEPFINQVLAYAQ 109 (629)
Q Consensus 86 ff~~g~e~~~-~l~p~~~~l~~~~q 109 (629)
|||+|||++. +++||+++|+..+|
T Consensus 191 ff~qG~ell~~~~~pf~~~v~~~~q 215 (215)
T cd07601 191 FFKMGPEMFTRQTEEFLSDINTSVQ 215 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999996 99999999998764
No 16
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.87 E-value=2.3e-22 Score=198.97 Aligned_cols=94 Identities=28% Similarity=0.397 Sum_probs=91.6
Q ss_pred hhhhhhHhHHHHHHHHHHhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 006831 7 TVAFNGDGNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRF 86 (629)
Q Consensus 7 ~~~Fe~~q~kyd~~~~ky~slsk~k~~~~~~E~a~eL~~aRk~f~~asldyv~~l~~vq~kk~~e~le~l~~~~~a~~~f 86 (629)
-++||+++++||++++||++++|+| |..++|++++|+++|+.|+++|||||.+|++||+||+|+||++|++||+||++|
T Consensus 107 kk~Fdk~s~~yd~al~k~~~~~K~K-~~~~~Ea~~~L~~~Rk~f~~~sldyv~~in~iq~kKk~e~le~ll~~~~A~~tf 185 (200)
T cd07603 107 KKHFEKISDDLDNALVKNAQAPRSK-PQEAEEATNILTATRSCFRHTALDYVLQINVLQAKKRHEILSTLLSYMHAQFTF 185 (200)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999987 889999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhHhhhhchHHH
Q 006831 87 FKQGYELLHQMEPFI 101 (629)
Q Consensus 87 f~~g~e~~~~l~p~~ 101 (629)
||+||+++++++||+
T Consensus 186 f~qG~el~~dl~py~ 200 (200)
T cd07603 186 FHQGYDLLEDLEPYM 200 (200)
T ss_pred HHhHHHHHHhhcCcC
Confidence 999999999999985
No 17
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=99.87 E-value=2.6e-22 Score=197.96 Aligned_cols=95 Identities=25% Similarity=0.425 Sum_probs=92.9
Q ss_pred hhhhhhHhHHHHHHHHHHhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 006831 7 TVAFNGDGNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRF 86 (629)
Q Consensus 7 ~~~Fe~~q~kyd~~~~ky~slsk~k~~~~~~E~a~eL~~aRk~f~~asldyv~~l~~vq~kk~~e~le~l~~~~~a~~~f 86 (629)
-++||+++.+||++++||++|+|+|++..++|++++|+.+|+.|++++||||.+|++||+||+|+|||+|++||+||++|
T Consensus 113 kk~FdK~se~~~~al~k~~~lsk~kk~~~~~ea~~~l~~~r~~f~~~~l~Yv~~l~~vq~rKkfefle~ll~~m~a~~tf 192 (207)
T cd07602 113 KKKFDKETEKFCSSLEKHLNLSTKKKENQLQEADAQLDMERRNFHQASLEYVFKLQEVQERKKFEFVETLLSFMYGWLTF 192 (207)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhHhhhhchHHH
Q 006831 87 FKQGYELLHQMEPFI 101 (629)
Q Consensus 87 f~~g~e~~~~l~p~~ 101 (629)
||+||+++++++||+
T Consensus 193 f~qG~el~~d~~py~ 207 (207)
T cd07602 193 YHQGHEVAKDFKPYL 207 (207)
T ss_pred HHhHHHHHHhhcccC
Confidence 999999999999985
No 18
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.86 E-value=8.5e-22 Score=194.57 Aligned_cols=94 Identities=26% Similarity=0.397 Sum_probs=89.8
Q ss_pred hhhhhhHhHHHHHHHHHHhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 006831 7 TVAFNGDGNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRF 86 (629)
Q Consensus 7 ~~~Fe~~q~kyd~~~~ky~slsk~k~~~~~~E~a~eL~~aRk~f~~asldyv~~l~~vq~kk~~e~le~l~~~~~a~~~f 86 (629)
-++||++|++||.+++|+++++ +|+|..++|++++|+++|+.|+++|||||.+||+||+||+|+||++|++||+||++|
T Consensus 107 rK~Fdk~se~yd~al~k~~~~k-~kk~~~l~Ea~~~L~~~Rk~f~~asLdyv~~ln~iq~kKk~e~le~ll~~~~a~~tf 185 (200)
T cd07637 107 KKQFDKVREDLEIALVKNAQAP-RHKPHEVEEATSTLTITRKCFRHLALDYVLQINVLQAKKKFEILDSMLSFMHAQYTF 185 (200)
T ss_pred HHHHHHHHHHHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999988866 667888899999999999999999999999999999999999999999999999999
Q ss_pred HhhhhHhhhhchHHH
Q 006831 87 FKQGYELLHQMEPFI 101 (629)
Q Consensus 87 f~~g~e~~~~l~p~~ 101 (629)
||+||+++++|+||+
T Consensus 186 f~qG~el~~~~~py~ 200 (200)
T cd07637 186 FQQGYSLLHELDPYM 200 (200)
T ss_pred HHhHHHHHHhhcccC
Confidence 999999999999985
No 19
>cd07631 BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. APPL1 interacts with diverse receptors (e.g. NGF receptor TrkA, FSHR, adiponectin receptors) and signaling proteins (e.g. Akt, PI3K), and may function as an adaptor linked to many distinct signaling pathways. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invo
Probab=99.86 E-value=1.7e-21 Score=190.88 Aligned_cols=103 Identities=28% Similarity=0.364 Sum_probs=97.4
Q ss_pred hhhhhhHhHHHHHHHHHHhcccCCCCcchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 006831 7 TVAFNGDGNFVLQAREKFLSLRKSTRMDVA-VVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLR 85 (629)
Q Consensus 7 ~~~Fe~~q~kyd~~~~ky~slsk~k~~~~~-~E~a~eL~~aRk~f~~asldyv~~l~~vq~kk~~e~le~l~~~~~a~~~ 85 (629)
-++||+++++||++++||++++|+|+++++ .|+++++..+|++|++++||||++|+.||+||+|+||++|++||+||++
T Consensus 111 KK~FdK~Se~~d~Al~K~a~lsk~K~~E~~~eea~~~v~~tR~~F~~~aLdYv~qLn~lQ~rKKfefLe~lLs~m~A~~t 190 (215)
T cd07631 111 KEVFQIASNDHDAAINRYSRLSKRRENEKVKYEVTEDVYTSRKKQHQTMMHYFCALNTLQYKKKIALLEPLLGYMQAQIS 190 (215)
T ss_pred HHHHHHhhhHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999977 5799999999999999999999999999999999999999999999999
Q ss_pred HHhhhhH-hhhhchHHHHHHHHHHH
Q 006831 86 FFKQGYE-LLHQMEPFINQVLAYAQ 109 (629)
Q Consensus 86 ff~~g~e-~~~~l~p~~~~l~~~~q 109 (629)
|||+||| +.++++||+++|...+|
T Consensus 191 FFhqG~e~L~~dl~~f~~~l~~~~q 215 (215)
T cd07631 191 FFKMGSENLNEQLEEFLTNIGTSVQ 215 (215)
T ss_pred HHHhhHHHHHHHHHHHHHHHHhhcC
Confidence 9999999 66799999999988664
No 20
>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain
Probab=99.85 E-value=2.1e-21 Score=190.92 Aligned_cols=95 Identities=21% Similarity=0.407 Sum_probs=92.6
Q ss_pred hhhhhhHhHHHHHHHHHHhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 006831 7 TVAFNGDGNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRF 86 (629)
Q Consensus 7 ~~~Fe~~q~kyd~~~~ky~slsk~k~~~~~~E~a~eL~~aRk~f~~asldyv~~l~~vq~kk~~e~le~l~~~~~a~~~f 86 (629)
-++|||++++||++++|++++++++++..+.|++++|..+|+.|++++||||.+|++||+||+|+||++|++||+||++|
T Consensus 113 kK~FDK~se~y~~aleK~l~l~~~kk~~~~~ea~~~l~~~R~~F~~~~ldYv~~i~~vq~kKkfefle~ll~~~~A~~tf 192 (207)
T cd07634 113 KKKFDKESEKYYSILEKHLNLSAKKKESHLQRADTQIDREHQNFYEASLEYVFKIQEVQEKKKFEFVEPLLAFLQGLFTF 192 (207)
T ss_pred ccchhHHHhHHHHHHHHHHhccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhHhhhhchHHH
Q 006831 87 FKQGYELLHQMEPFI 101 (629)
Q Consensus 87 f~~g~e~~~~l~p~~ 101 (629)
||+||+++++|+||.
T Consensus 193 f~qG~el~~dl~py~ 207 (207)
T cd07634 193 YHEGYELAQEFAPYK 207 (207)
T ss_pred HHhHHHHHHhhcCCC
Confidence 999999999999983
No 21
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.85 E-value=3.3e-21 Score=190.56 Aligned_cols=94 Identities=48% Similarity=0.769 Sum_probs=92.2
Q ss_pred hhhhhhHhHHHHHHHHHHhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 006831 7 TVAFNGDGNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRF 86 (629)
Q Consensus 7 ~~~Fe~~q~kyd~~~~ky~slsk~k~~~~~~E~a~eL~~aRk~f~~asldyv~~l~~vq~kk~~e~le~l~~~~~a~~~f 86 (629)
-++|||++.+||++++||++++|+++++.++|++++|..+|+.|++++||||.+|++||.||+|+||++|++||+||++|
T Consensus 109 kK~FdK~s~~yd~al~K~~~l~k~~k~~~~~ea~~~l~~~R~~F~~~~ldyv~~ln~~q~kKk~e~le~ll~~m~A~~tF 188 (202)
T cd07606 109 RRRFDKASLDYEQARSKFLSLTKDAKPEILAAAEEDLGTTRSAFETARFDLMNRLHAADARKRVEFLERLSGSMDAHLAF 188 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhHhhhhchHH
Q 006831 87 FKQGYELLHQMEPF 100 (629)
Q Consensus 87 f~~g~e~~~~l~p~ 100 (629)
||+||+++.+|+||
T Consensus 189 F~qG~ell~~l~py 202 (202)
T cd07606 189 FKSGYELLRQLEPY 202 (202)
T ss_pred HHHHHHHHHhcCCC
Confidence 99999999999997
No 22
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=99.84 E-value=6.1e-21 Score=187.89 Aligned_cols=95 Identities=19% Similarity=0.334 Sum_probs=92.1
Q ss_pred hhhhhhHhHHHHHHHHHHhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 006831 7 TVAFNGDGNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRF 86 (629)
Q Consensus 7 ~~~Fe~~q~kyd~~~~ky~slsk~k~~~~~~E~a~eL~~aRk~f~~asldyv~~l~~vq~kk~~e~le~l~~~~~a~~~f 86 (629)
-++|||.+++||++++|++++++++++..++|++.+|..+|++|.+++||||.+|+.||+||+||||++|++||+||++|
T Consensus 113 kK~FdK~se~~~~al~k~~~ls~k~K~~~~eEA~~~L~~~r~~F~~~sLdYV~qi~~vq~rKkfefle~llsfm~a~~tf 192 (207)
T cd07636 113 KKKYDKETEKYCAVLEKHLNLSSKKKESQLHEADSQVDLVRQHFYEVSLEYVFKVQEVQERKMFEFVEPLLAFLQGLFTF 192 (207)
T ss_pred hhhHhhhhhHHHHHHHHHhcCcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37999999999999999999998888889999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhHhhhhchHHH
Q 006831 87 FKQGYELLHQMEPFI 101 (629)
Q Consensus 87 f~~g~e~~~~l~p~~ 101 (629)
||+||+++.++.||.
T Consensus 193 fhqG~el~~d~~~y~ 207 (207)
T cd07636 193 YHHGYELAKDFSDFK 207 (207)
T ss_pred HHhHHHHHHhhcccC
Confidence 999999999999983
No 23
>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote
Probab=99.84 E-value=6.9e-21 Score=187.52 Aligned_cols=95 Identities=20% Similarity=0.349 Sum_probs=90.7
Q ss_pred hhhhhhHhHHHHHHHHHHhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 006831 7 TVAFNGDGNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRF 86 (629)
Q Consensus 7 ~~~Fe~~q~kyd~~~~ky~slsk~k~~~~~~E~a~eL~~aRk~f~~asldyv~~l~~vq~kk~~e~le~l~~~~~a~~~f 86 (629)
-++||+++++||++++||++++++|++..++|++++|..+|++|++++||||.+|+.||+||+|+||++|++||+||++|
T Consensus 113 KK~FdK~se~~~~Al~K~~~ls~kkk~~e~~EA~~~l~~~r~~F~~~sLdYv~qin~lQ~rKKfe~le~ll~~m~a~~tf 192 (207)
T cd07635 113 KKKFDKETEKNYSLLEKHLNLSAKKKEPQLQEADVQVEQNRQHFYELSLEYVCKLQEIQERKKFECVEPMLSFFQGVFTF 192 (207)
T ss_pred HHHHHHhhhHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37999999999999999999997776668899999999999999999999999999999999999999999999999999
Q ss_pred HhhhhHhhhhchHHH
Q 006831 87 FKQGYELLHQMEPFI 101 (629)
Q Consensus 87 f~~g~e~~~~l~p~~ 101 (629)
||+|||++++++||.
T Consensus 193 fhqG~el~~d~~~y~ 207 (207)
T cd07635 193 YHQGYELAKDFNHYK 207 (207)
T ss_pred HHhHHHHHHhhcccC
Confidence 999999999999983
No 24
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.83 E-value=1.7e-20 Score=184.52 Aligned_cols=94 Identities=23% Similarity=0.375 Sum_probs=89.9
Q ss_pred hhhhhhHhHHHHHHHHHHhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 006831 7 TVAFNGDGNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRF 86 (629)
Q Consensus 7 ~~~Fe~~q~kyd~~~~ky~slsk~k~~~~~~E~a~eL~~aRk~f~~asldyv~~l~~vq~kk~~e~le~l~~~~~a~~~f 86 (629)
-++||+++++||.++.||+.++|+| +..++|++.+|+.+|++|++++||||.+|+.||+||+|+||++|++||+||++|
T Consensus 107 kk~FdK~s~~~~~aL~K~~~~~k~k-~~e~eEa~~~l~~~r~~F~~~~ldYv~~ln~vq~kKkfe~le~ll~~m~a~~tf 185 (200)
T cd07638 107 KKQFDKVSEEKENALVKNAQVQRNK-QHEVEEATNILTATRKCFRHIALDYVLQINVLQSKRRSEILKSMLSFMYAHLTF 185 (200)
T ss_pred HHHHHHHhHHHHHHHHHhccCCcCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999777 555699999999999999999999999999999999999999999999999999
Q ss_pred HhhhhHhhhhchHHH
Q 006831 87 FKQGYELLHQMEPFI 101 (629)
Q Consensus 87 f~~g~e~~~~l~p~~ 101 (629)
||+||+++++|+|||
T Consensus 186 f~qG~el~~d~~py~ 200 (200)
T cd07638 186 FHQGYDLFSELGPYM 200 (200)
T ss_pred HHhHHHHHHHhcccC
Confidence 999999999999986
No 25
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.82 E-value=2.4e-20 Score=183.34 Aligned_cols=94 Identities=21% Similarity=0.308 Sum_probs=89.0
Q ss_pred hhhhhhHhHHHHHHHHHHhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 006831 7 TVAFNGDGNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRF 86 (629)
Q Consensus 7 ~~~Fe~~q~kyd~~~~ky~slsk~k~~~~~~E~a~eL~~aRk~f~~asldyv~~l~~vq~kk~~e~le~l~~~~~a~~~f 86 (629)
-++|||++.+||++++|+++++|+| +..++|++++|..+|++|++++||||.+|++||+||+|+||++|++||+||++|
T Consensus 107 kK~FdK~s~~~d~al~K~~~~~k~k-~~e~~Ea~~~l~~~R~~F~~~~ldYV~~in~iq~kKkfefle~ll~~m~a~~tf 185 (200)
T cd07639 107 RKEFERGAESLEAALQHNAETPRRK-AQEVEEAAAALLGARATFRDRALDYALQINVIEDKKKFDILEFMLQLMEAQASF 185 (200)
T ss_pred hhhHhhcchhHHHHHHHHhhccccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999665 445699999999999999999999999999999999999999999999999999
Q ss_pred HhhhhHhhhhchHHH
Q 006831 87 FKQGYELLHQMEPFI 101 (629)
Q Consensus 87 f~~g~e~~~~l~p~~ 101 (629)
||+||+++.+|+||+
T Consensus 186 F~qG~ell~~l~~y~ 200 (200)
T cd07639 186 FQQGHEALSALHQYR 200 (200)
T ss_pred HHHHHHHHHhhcccC
Confidence 999999999999985
No 26
>cd07632 BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. Both APPL proteins interact with the transcriptional repressor Reptin, acting as activators of beta-catenin/TCF-mediated trancription. APPL2 is essential for cell proliferation. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interac
Probab=99.81 E-value=1.2e-19 Score=176.49 Aligned_cols=101 Identities=21% Similarity=0.318 Sum_probs=93.4
Q ss_pred hhhhhHhHHHHHHHHHHhcccCCCCcchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 006831 8 VAFNGDGNFVLQAREKFLSLRKSTRMDVAV-VIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRF 86 (629)
Q Consensus 8 ~~Fe~~q~kyd~~~~ky~slsk~k~~~~~~-E~a~eL~~aRk~f~~asldyv~~l~~vq~kk~~e~le~l~~~~~a~~~f 86 (629)
++|||.+++||.+++||+.++|+|+.++.. |.+.+|..+|+.|++++||||++||.||+||+|+||++|++||+|+.+|
T Consensus 112 K~FdK~Se~~d~AL~KnaqlskkK~~E~~eae~~~~l~~sRr~F~~~ALdYV~qiN~lQ~RKKfeiLE~mLsym~Aq~TF 191 (215)
T cd07632 112 DLFGIASNEHDLSMAKYSRLPKKRENEKVKAEVAKEVAYSRRKQHLSSLQYYCALNALQYRKRVAMLEPMLGYTHGQINF 191 (215)
T ss_pred HHHHHHhHHHHHHHHHHhhCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999777764 4567899999999999999999999999999999999999999999999
Q ss_pred HhhhhHhh-hhchHHHHHHHHHH
Q 006831 87 FKQGYELL-HQMEPFINQVLAYA 108 (629)
Q Consensus 87 f~~g~e~~-~~l~p~~~~l~~~~ 108 (629)
||+|||++ .+++.|+..+...+
T Consensus 192 FhQGyeL~~~~~~~~~~~~~~~~ 214 (215)
T cd07632 192 FKKGAELFSKKLDSFLSSVSDMN 214 (215)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999 57999998887643
No 27
>cd07633 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin-1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Oligophrenin-1 (OPHN1) is a GTPase activating protein (GAP) with activity towards RhoA, Rac, and Cdc42, that is expressed in developing spinal cord and in adult brain areas with high plasticity. It plays a role in regulating the actin cystoskeleton as well as morphology changes in axons and dendrites, and may also function in modulating neuronal connectivity. Mutations in the OPHN1 gene causes X-linked mental retardation associated with cerebellar hypoplasia, lateral ventricle enlargement and epilepsy. OPHN1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.81 E-value=8.8e-20 Score=177.62 Aligned_cols=95 Identities=15% Similarity=0.254 Sum_probs=91.6
Q ss_pred hhhhhhHhHHHHHHHHHHhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 006831 7 TVAFNGDGNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRF 86 (629)
Q Consensus 7 ~~~Fe~~q~kyd~~~~ky~slsk~k~~~~~~E~a~eL~~aRk~f~~asldyv~~l~~vq~kk~~e~le~l~~~~~a~~~f 86 (629)
-++|||.+++||++++|++.+|.++++.-++|++.+|..+|++|.+.+||||++|+.||.||+|+||++|++||+++++|
T Consensus 113 KK~FdK~se~~~~aL~k~a~~s~k~K~~e~eEA~~~L~~~r~~F~~~aLdYV~qI~~vQerKKfeive~mLsf~~a~~tf 192 (207)
T cd07633 113 KKKFEKDSEKFYSLLDRHVNLSSKKKESQLQEADLQVDKERQNFYESSLEYVYQIQEVQESKKFDVVEPVLAFLHSLFTS 192 (207)
T ss_pred hhhhhhhhhHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999988888888899999999999999999999999999999999999999999999999999
Q ss_pred HhhhhHhhhhchHHH
Q 006831 87 FKQGYELLHQMEPFI 101 (629)
Q Consensus 87 f~~g~e~~~~l~p~~ 101 (629)
||+||+++.+++||.
T Consensus 193 ~hqG~el~~df~~y~ 207 (207)
T cd07633 193 NNLTVELTQDFLPYK 207 (207)
T ss_pred HhhHHHHHHHhcccC
Confidence 999999999999983
No 28
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=99.77 E-value=1.8e-18 Score=153.17 Aligned_cols=94 Identities=29% Similarity=0.464 Sum_probs=74.8
Q ss_pred eeEeeeeeeccCCCCCCceeEEEEEecCceEEEEeCCCCCCCcCCCcccccCCCCCCccccccccccccccCCCcccccc
Q 006831 178 TIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKS 257 (629)
Q Consensus 178 ~iKqGyL~Krs~~~~k~WkRRwFvL~~~glLyYy~~~~~~~~g~~~~~~~~~~~~~~~g~g~l~~~~~~~~~g~v~d~~~ 257 (629)
++|+|||.|+++.. +.|+||||+|+ ++.|+||+++.+.
T Consensus 2 v~k~G~L~Kkg~~~-k~WkkRwfvL~-~~~L~yyk~~~~~---------------------------------------- 39 (100)
T cd01233 2 VSKKGYLNFPEETN-SGWTRRFVVVR-RPYLHIYRSDKDP---------------------------------------- 39 (100)
T ss_pred cceeEEEEeeCCCC-CCcEEEEEEEE-CCEEEEEccCCCc----------------------------------------
Confidence 57999999998875 89999999998 5678888776531
Q ss_pred ceeeEeecccceeecCCCCC---CCcceEEEeeCCcEEEEEeCCHHHHHHHHHHHHHHH
Q 006831 258 VARHTVNLLTSTIKPDADQS---DLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVI 313 (629)
Q Consensus 258 ~~~~~i~l~~~~vk~~~d~~---drrfcF~Iit~~rty~LqAeSe~E~~~WI~aI~~aI 313 (629)
.+.+.|+|..+.+...++.. .+++||.|++++|+|+|+|+|++|+++||++|+..+
T Consensus 40 ~~~~~I~L~~~~v~~~~~~~~~~~~~~~F~I~t~~rt~~~~A~s~~e~~~Wi~ai~~~~ 98 (100)
T cd01233 40 VERGVINLSTARVEHSEDQAAMVKGPNTFAVCTKHRGYLFQALSDKEMIDWLYALNPLY 98 (100)
T ss_pred cEeeEEEecccEEEEccchhhhcCCCcEEEEECCCCEEEEEcCCHHHHHHHHHHhhhhh
Confidence 22355666666666543321 367999999999999999999999999999998765
No 29
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=99.76 E-value=2.5e-18 Score=153.18 Aligned_cols=95 Identities=22% Similarity=0.518 Sum_probs=68.8
Q ss_pred EeeeeeeccCCCCCCceeEEEEEecCceEEEEeCCCCCCCcCCCcccccCCCCCCccccccccccccccCCCccccccce
Q 006831 180 KQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKSVA 259 (629)
Q Consensus 180 KqGyL~Krs~~~~k~WkRRwFvL~~~glLyYy~~~~~~~~g~~~~~~~~~~~~~~~g~g~l~~~~~~~~~g~v~d~~~~~ 259 (629)
|+|||.|+++...+.|+||||+|+ ++.|+||+++.+. .+
T Consensus 1 KeG~L~K~g~~~~k~wkkRwFvL~-~~~L~Yyk~~~d~----------------------------------------~~ 39 (103)
T cd01251 1 KEGFMEKTGPKHTEGFKKRWFTLD-DRRLMYFKDPLDA----------------------------------------FA 39 (103)
T ss_pred CceeEEecCCCCCCCceeEEEEEe-CCEEEEECCCCCc----------------------------------------Cc
Confidence 689999998875689999999998 5678888876542 11
Q ss_pred eeEeeccc----ceeecC-CC--CCCCcceEEEeeCCcEEEEEeCCHHHHHHHHHHHHHHHHH
Q 006831 260 RHTVNLLT----STIKPD-AD--QSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVIAS 315 (629)
Q Consensus 260 ~~~i~l~~----~~vk~~-~d--~~drrfcF~Iit~~rty~LqAeSe~E~~~WI~aI~~aI~~ 315 (629)
.+.|.|.. +.|... ++ .....+||.|+||+|+|+|+|+|++|+.+||++|+.+|.+
T Consensus 40 ~G~I~L~~~~~~~~v~~~~~~~~~~~~~~~F~i~t~~Rty~l~a~s~~e~~~Wi~ai~~v~~~ 102 (103)
T cd01251 40 KGEVFLGSQEDGYEVREGLPPGTQGNHWYGVTLVTPERKFLFACETEQDRREWIAAFQNVLSR 102 (103)
T ss_pred CcEEEeeccccceeEeccCCccccccccceEEEEeCCeEEEEECCCHHHHHHHHHHHHHHhcC
Confidence 12233321 122111 11 2233469999999999999999999999999999998853
No 30
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.73 E-value=1.8e-17 Score=145.41 Aligned_cols=90 Identities=26% Similarity=0.390 Sum_probs=72.5
Q ss_pred eeeeeeccCC-CCCCceeEEEEEecC-ceEEEEeCCCCCCCcCCCcccccCCCCCCccccccccccccccCCCccccccc
Q 006831 181 QGYLSKRSSN-LRADWKRRFFVLDSR-GLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKSV 258 (629)
Q Consensus 181 qGyL~Krs~~-~~k~WkRRwFvL~~~-glLyYy~~~~~~~~g~~~~~~~~~~~~~~~g~g~l~~~~~~~~~g~v~d~~~~ 258 (629)
+|||.|+++. ..+.|+||||||+++ +.||||+++.+. .
T Consensus 2 ~GyL~K~g~~~~~K~WkkRWFvL~~~~~~L~Yyk~~~d~----------------------------------------~ 41 (95)
T cd01265 2 CGYLHKIEGKGPLRGRRSRWFALDDRTCYLYYYKDSQDA----------------------------------------K 41 (95)
T ss_pred cccEEEecCCCCCcCceeEEEEEcCCCcEEEEECCCCcc----------------------------------------c
Confidence 6999999864 468999999999864 589999877542 2
Q ss_pred eeeEeecccceeecCCCCCCCcceEEEeeCCcEEEEEeCCHHHHHHHHHHHHHH
Q 006831 259 ARHTVNLLTSTIKPDADQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGV 312 (629)
Q Consensus 259 ~~~~i~l~~~~vk~~~d~~drrfcF~Iit~~rty~LqAeSe~E~~~WI~aI~~a 312 (629)
+.+.|+|..+.+...++ +.+++|.|+|++|+|+|+|+|++|+++||++|+.+
T Consensus 42 p~G~I~L~~~~~~~~~~--~~~~~F~i~t~~r~y~l~A~s~~e~~~Wi~al~~~ 93 (95)
T cd01265 42 PLGRVDLSGAAFTYDPR--EEKGRFEIHSNNEVIALKASSDKQMNYWLQALQSK 93 (95)
T ss_pred ccceEECCccEEEcCCC--CCCCEEEEEcCCcEEEEECCCHHHHHHHHHHHHhh
Confidence 44667777766654433 34789999999999999999999999999999865
No 31
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=99.72 E-value=1.8e-17 Score=165.58 Aligned_cols=98 Identities=17% Similarity=0.341 Sum_probs=89.5
Q ss_pred hhhhhhHhHHHHHHHHHHhcccCC-------CCcchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 006831 7 TVAFNGDGNFVLQAREKFLSLRKS-------TRMDVA-VVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGG 78 (629)
Q Consensus 7 ~~~Fe~~q~kyd~~~~ky~slsk~-------k~~~~~-~E~a~eL~~aRk~f~~asldyv~~l~~vq~kk~~e~le~l~~ 78 (629)
-++||++++.||++.++..+.+|+ .++++. .|++++|..+|+.|++++||||++|+.||.||+|+||+++++
T Consensus 110 KK~fdK~s~~ye~~~~k~~k~Kk~~~~~~~~~r~e~~~~e~~~~l~~~R~~F~~~~~~yv~~l~~lq~kKk~e~Le~ll~ 189 (215)
T cd07604 110 KKPFDKAWKDYETKASKIEKEKKQLAKEAGMIRTEITGAEIAEEMEKERRMFQLQMCEYLIKVNEIKTKKGVDLLQHLVE 189 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhhhhhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999998887665 244554 789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHhhhhchHHHHHH
Q 006831 79 TMDAHLRFFKQGYELLHQMEPFINQV 104 (629)
Q Consensus 79 ~~~a~~~ff~~g~e~~~~l~p~~~~l 104 (629)
||+||++||++||+++++|+||+++|
T Consensus 190 ~~~Aq~~fF~~G~~ll~~l~p~~~~L 215 (215)
T cd07604 190 YYHAQNSYFQDGLKVIEHFRPYIEKL 215 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcC
Confidence 99999999999999999999999874
No 32
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.72 E-value=3.1e-17 Score=144.87 Aligned_cols=93 Identities=22% Similarity=0.427 Sum_probs=68.6
Q ss_pred EeeeeeeccCC--CCCCceeEEEEEecCceEEEEeCCCCCCCcCCCcccccCCCCCCccccccccccccccCCCcccccc
Q 006831 180 KQGYLSKRSSN--LRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKS 257 (629)
Q Consensus 180 KqGyL~Krs~~--~~k~WkRRwFvL~~~glLyYy~~~~~~~~g~~~~~~~~~~~~~~~g~g~l~~~~~~~~~g~v~d~~~ 257 (629)
.+|||.|+++. ..|+|+||||+|+ ++.|+||++.....
T Consensus 2 ~~G~l~k~~g~~r~~K~WkrRwF~L~-~~~L~y~K~~~~~~--------------------------------------- 41 (101)
T cd01264 2 IEGQLKEKKGRWRFIKRWKTRYFTLS-GAQLLFQKGKSKDD--------------------------------------- 41 (101)
T ss_pred cceEEeecCccceeeecceeEEEEEe-CCEEEEEeccCccC---------------------------------------
Confidence 47999999884 5699999999999 56677877653310
Q ss_pred ceeeEeecccc-eeecCCCCC---CCcceEEEeeCCcEEEEEeCCHHHHHHHHHHHHHH
Q 006831 258 VARHTVNLLTS-TIKPDADQS---DLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGV 312 (629)
Q Consensus 258 ~~~~~i~l~~~-~vk~~~d~~---drrfcF~Iit~~rty~LqAeSe~E~~~WI~aI~~a 312 (629)
...+.|+|..| +|++..+.. +++|||+|.||+|+|+|+|+|++|+++||++|+.|
T Consensus 42 ~~~g~IdL~~~~sVk~~~~~~~~~~~~~~Fei~tp~rt~~l~A~se~e~e~WI~~i~~a 100 (101)
T cd01264 42 PDDCSIDLSKIRSVKAVAKKRRDRSLPKAFEIFTADKTYILKAKDEKNAEEWLQCLNIA 100 (101)
T ss_pred CCCceEEcccceEEeeccccccccccCcEEEEEcCCceEEEEeCCHHHHHHHHHHHHhh
Confidence 11244555444 344432211 34699999999999999999999999999999876
No 33
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.71 E-value=4.5e-17 Score=144.90 Aligned_cols=92 Identities=24% Similarity=0.421 Sum_probs=70.0
Q ss_pred EeeeeeeccCC--------CCCCceeEEEEEecCceEEEEeCCCCCCCcCCCcccccCCCCCCccccccccccccccCCC
Q 006831 180 KQGYLSKRSSN--------LRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGG 251 (629)
Q Consensus 180 KqGyL~Krs~~--------~~k~WkRRwFvL~~~glLyYy~~~~~~~~g~~~~~~~~~~~~~~~g~g~l~~~~~~~~~g~ 251 (629)
++|||+|...+ .++.||||||||+++++||||+++...
T Consensus 1 ~~g~l~~~~~~~~~~~~~~~~K~WkrRWFvL~~~~~L~y~~d~~~~---------------------------------- 46 (104)
T cd01236 1 YCGWLLVAPDGTDFDNPVHRSKRWQRRWFILYDHGLLTYALDEMPT---------------------------------- 46 (104)
T ss_pred CcceeEEcCCCCcccccceeeccccceEEEEeCCCEEEEeeCCCCC----------------------------------
Confidence 47999998665 258999999999988999998755210
Q ss_pred ccccccceeeEeecccceeecCCC-CCCCcceEEEeeCCcEEEEEeCCHHHHHHHHHHHH
Q 006831 252 VHDEKSVARHTVNLLTSTIKPDAD-QSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKIN 310 (629)
Q Consensus 252 v~d~~~~~~~~i~l~~~~vk~~~d-~~drrfcF~Iit~~rty~LqAeSe~E~~~WI~aI~ 310 (629)
..+.+.|+|..|..-..++ .....|||.|+||+|+|+|.|+|++|+++||.+|.
T Consensus 47 -----~~p~G~IdL~~~~~V~~~~~~~~~~~~f~I~tp~R~f~l~Aete~E~~~Wi~~l~ 101 (104)
T cd01236 47 -----TLPQGTIDMNQCTDVVDAEARTGQKFSICILTPDKEHFIKAETKEEISWWLNMLM 101 (104)
T ss_pred -----cccceEEEccceEEEeecccccCCccEEEEECCCceEEEEeCCHHHHHHHHHHHH
Confidence 1234566666555433322 23446999999999999999999999999999986
No 34
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=99.70 E-value=6.3e-17 Score=144.88 Aligned_cols=95 Identities=20% Similarity=0.375 Sum_probs=67.5
Q ss_pred eEeeeeeeccCC----CCCCceeEEEEEecCceEEEEeCCCCCCCcCCCcccccCCCCCCccccccccccccccCCCccc
Q 006831 179 IKQGYLSKRSSN----LRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHD 254 (629)
Q Consensus 179 iKqGyL~Krs~~----~~k~WkRRwFvL~~~glLyYy~~~~~~~~g~~~~~~~~~~~~~~~g~g~l~~~~~~~~~g~v~d 254 (629)
+|+|||+||+.+ .+++|++|||||+ ++.|+||+++.+.
T Consensus 1 ~k~g~l~Kr~~~~~~~~~~nwKkRwFvL~-~~~L~Yyk~~~~~------------------------------------- 42 (106)
T cd01238 1 ILESILVKRSQQKKKTSPLNYKERLFVLT-KSKLSYYEGDFEK------------------------------------- 42 (106)
T ss_pred CcceeeeeeccCCCCCCCCCceeEEEEEc-CCEEEEECCCccc-------------------------------------
Confidence 589999999755 2359999999997 6778888776431
Q ss_pred cccceeeEeeccccee-ecCCCC------CCCcceEEEeeCCcEEEEEeCCHHHHHHHHHHHHHH
Q 006831 255 EKSVARHTVNLLTSTI-KPDADQ------SDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGV 312 (629)
Q Consensus 255 ~~~~~~~~i~l~~~~v-k~~~d~------~drrfcF~Iit~~rty~LqAeSe~E~~~WI~aI~~a 312 (629)
...+.+.|+|..+.. .+..+. ..+.+||+|++++|+|+|+|+|++|+++||++|+.+
T Consensus 43 -~~~~kG~I~L~~~~~ve~~~~~~~~~~~~~~~~~F~i~t~~r~~yl~A~s~~er~~WI~ai~~~ 106 (106)
T cd01238 43 -RGSKKGSIDLSKIKCVETVKPEKNPPIPERFKYPFQVVHDEGTLYVFAPTEELRKRWIKALKQV 106 (106)
T ss_pred -ccCcceeEECCcceEEEEecCCcCcccccccCccEEEEeCCCeEEEEcCCHHHHHHHHHHHHhC
Confidence 011234444443321 111111 135799999999999999999999999999999853
No 35
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=99.69 E-value=1.2e-16 Score=139.95 Aligned_cols=91 Identities=27% Similarity=0.508 Sum_probs=71.3
Q ss_pred EeeeeeeccCC---CCCCceeEEEEEecCceEEEEeCCCCCCCcCCCcccccCCCCCCccccccccccccccCCCccccc
Q 006831 180 KQGYLSKRSSN---LRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEK 256 (629)
Q Consensus 180 KqGyL~Krs~~---~~k~WkRRwFvL~~~glLyYy~~~~~~~~g~~~~~~~~~~~~~~~g~g~l~~~~~~~~~g~v~d~~ 256 (629)
++|||+|+++. ..+.|++|||||. ++.|+||+++.+.
T Consensus 2 ~~GwL~kk~~~~g~~~k~WkkrwfvL~-~~~L~yyk~~~~~--------------------------------------- 41 (96)
T cd01260 2 CDGWLWKRKKPGGFMGQKWARRWFVLK-GTTLYWYRSKQDE--------------------------------------- 41 (96)
T ss_pred ceeEEEEecCCCCccccCceeEEEEEE-CCEEEEECCCCCC---------------------------------------
Confidence 58999999754 2358999999998 5678888776542
Q ss_pred cceeeEeecccceeecCCCCCCCcceEEEeeCC-cEEEEEeCCHHHHHHHHHHHHHH
Q 006831 257 SVARHTVNLLTSTIKPDADQSDLRFCFRIISPT-KVYTLQAENTLDQMDWIEKINGV 312 (629)
Q Consensus 257 ~~~~~~i~l~~~~vk~~~d~~drrfcF~Iit~~-rty~LqAeSe~E~~~WI~aI~~a 312 (629)
.+.+.|.|..+++... .+..++|||.|++|+ ++|+|+|+|++|+++||.+|+.|
T Consensus 42 -~~~~~I~L~~~~v~~~-~~~~k~~~F~I~~~~~~~~~f~a~s~~e~~~Wi~ai~~~ 96 (96)
T cd01260 42 -KAEGLIFLSGFTIESA-KEVKKKYAFKVCHPVYKSFYFAAETLDDLSQWVNHLITA 96 (96)
T ss_pred -ccceEEEccCCEEEEc-hhcCCceEEEECCCCCcEEEEEeCCHHHHHHHHHHHHhC
Confidence 1235566666666653 334589999999999 99999999999999999999864
No 36
>cd07641 BAR_ASAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP1 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1) is also known as DDEF1 (Development and Differentiation Enhancing Factor 1), AMAP1, centaurin beta-4, or PAG2. ASAP1 is an Arf GTPase activating protein (GAP) with activity towards Arf1 and Arf5 but not Arf6 However, it has been shown to bind GTP-Arf6 stably without GAP activity. It has been implicated in cell growth, migration, and survival, as well as in tumor invasion and malignancy. It binds paxillin and cortactin, two components of invadopodia which are essential for tumor invasiveness. It also binds focal adhesion kinase (FAK) and the SH2/SH3 adaptor CrkL. ASAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Ar
Probab=99.68 E-value=1.7e-16 Score=155.18 Aligned_cols=98 Identities=15% Similarity=0.261 Sum_probs=92.0
Q ss_pred hhhhhhHhHHHHHHHHHHhcccC--CCCcchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 006831 7 TVAFNGDGNFVLQAREKFLSLRK--STRMDVAV------VIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGG 78 (629)
Q Consensus 7 ~~~Fe~~q~kyd~~~~ky~slsk--~k~~~~~~------E~a~eL~~aRk~f~~asldyv~~l~~vq~kk~~e~le~l~~ 78 (629)
-+.|||++++||.++.|-...++ .|..++.+ |++++|..+|++|+..+||||++|+.+|.||++++|+.+++
T Consensus 110 KK~FdK~~kDye~k~~K~ek~~r~~~K~~e~~r~e~~~~Eaa~~l~~~Rr~Fq~~a~dYllqin~iq~Kk~~eiLq~ll~ 189 (215)
T cd07641 110 KKPFDKAWKDYETKFTKIEKEKREHAKQHGMIRTEITGAEIAEEMEKERRLFQLQMCEYLIKVNEIKTKKGVDLLQNLIK 189 (215)
T ss_pred HhHHHHHHHHHHHHHHHHHhhhhhhcCcccchhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 47899999999999999998888 67666665 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHhhhhchHHHHHH
Q 006831 79 TMDAHLRFFKQGYELLHQMEPFINQV 104 (629)
Q Consensus 79 ~~~a~~~ff~~g~e~~~~l~p~~~~l 104 (629)
|||||.+||++|++++++|+||+++|
T Consensus 190 ~~hAq~tfFqqG~~~~~~l~py~k~l 215 (215)
T cd07641 190 YYHAQCNFFQDGLKTADKLKQYIEKL 215 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999864
No 37
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=99.67 E-value=4.4e-16 Score=135.66 Aligned_cols=88 Identities=27% Similarity=0.431 Sum_probs=70.9
Q ss_pred eeeeeeccCCCCCCceeEEEEEecCceEEEEeCCCCCCCcCCCcccccCCCCCCccccccccccccccCCCcccccccee
Q 006831 181 QGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKSVAR 260 (629)
Q Consensus 181 qGyL~Krs~~~~k~WkRRwFvL~~~glLyYy~~~~~~~~g~~~~~~~~~~~~~~~g~g~l~~~~~~~~~g~v~d~~~~~~ 260 (629)
+|||.|++.. .++|++|||||+ +|.|+||+++.+.. ..+.
T Consensus 2 ~G~L~K~~~~-~k~Wk~RwFvL~-~g~L~Yyk~~~~~~--------------------------------------~~~~ 41 (91)
T cd01247 2 NGVLSKWTNY-INGWQDRYFVLK-EGNLSYYKSEAEKS--------------------------------------HGCR 41 (91)
T ss_pred ceEEEEeccc-cCCCceEEEEEE-CCEEEEEecCccCc--------------------------------------CCCc
Confidence 6999999765 489999999997 78888888765420 1245
Q ss_pred eEeecccceeecCCCCCCCcceEEEeeCC-cEEEEEeCCHHHHHHHHHHHHH
Q 006831 261 HTVNLLTSTIKPDADQSDLRFCFRIISPT-KVYTLQAENTLDQMDWIEKING 311 (629)
Q Consensus 261 ~~i~l~~~~vk~~~d~~drrfcF~Iit~~-rty~LqAeSe~E~~~WI~aI~~ 311 (629)
+.|+|..|.+..+ + .++++|+|.+.. ++|+|.|+|++|+++||++|+.
T Consensus 42 G~I~L~~~~i~~~--~-~~~~~F~i~~~~~r~~~L~A~s~~e~~~Wi~al~~ 90 (91)
T cd01247 42 GSIFLKKAIIAAH--E-FDENRFDISVNENVVWYLRAENSQSRLLWMDSVVR 90 (91)
T ss_pred EEEECcccEEEcC--C-CCCCEEEEEeCCCeEEEEEeCCHHHHHHHHHHHhh
Confidence 7788888887754 2 236899997766 9999999999999999999974
No 38
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=99.67 E-value=4.1e-16 Score=137.48 Aligned_cols=92 Identities=28% Similarity=0.492 Sum_probs=67.9
Q ss_pred eeeeeeccCCCCCCceeEEEEEec-CceEEEEeCCCCCCCcCCCcccccCCCCCCccccccccccccccCCCccccccce
Q 006831 181 QGYLSKRSSNLRADWKRRFFVLDS-RGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKSVA 259 (629)
Q Consensus 181 qGyL~Krs~~~~k~WkRRwFvL~~-~glLyYy~~~~~~~~g~~~~~~~~~~~~~~~g~g~l~~~~~~~~~g~v~d~~~~~ 259 (629)
+|||.|+++. .+.|++|||+|++ ++.|+||+++.+. .+
T Consensus 2 ~G~L~K~g~~-~k~WkkRwFvL~~~~~~L~Yy~~~~~~----------------------------------------~~ 40 (101)
T cd01235 2 EGYLYKRGAL-LKGWKPRWFVLDPDKHQLRYYDDFEDT----------------------------------------AE 40 (101)
T ss_pred eEEEEEcCCC-CCCccceEEEEECCCCEEEEecCCCCC----------------------------------------cc
Confidence 7999999876 4899999999986 4578999876532 11
Q ss_pred eeEeecccce-eec------CCCCCCCcceEEEeeCCcEEEEEeCCHHHHHHHHHHHHHHH
Q 006831 260 RHTVNLLTST-IKP------DADQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVI 313 (629)
Q Consensus 260 ~~~i~l~~~~-vk~------~~d~~drrfcF~Iit~~rty~LqAeSe~E~~~WI~aI~~aI 313 (629)
.+.|+|..++ +.. .+....+.++|.|.++.|+|+|+|+|++|+.+||.+|+.+|
T Consensus 41 ~g~I~L~~~~~v~~~~~~~~~~~~~~~~~~f~i~t~~r~~~~~a~s~~e~~~Wi~ai~~~i 101 (101)
T cd01235 41 KGCIDLAEVKSVNLAQPGMGAPKHTSRKGFFDLKTSKRTYNFLAENINEAQRWKEKIQQCI 101 (101)
T ss_pred ceEEEcceeEEEeecCCCCCCCCCCCCceEEEEEeCCceEEEECCCHHHHHHHHHHHHhhC
Confidence 2333333221 111 12233467899999999999999999999999999999876
No 39
>cd07640 BAR_ASAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP3 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3) is also known as ACAP4 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 4), DDEFL1 (Development and Differentiation Enhancing Factor-Like 1), or centaurin beta-6. It is an Arf6-specific GTPase activating protein (GAP) and is co-localized with Arf6 in ruffling membranes upon EGF stimulation. ASAP3 is implicated in the pathogenesis of hepatocellular carcinoma and plays a role in regulating cell migration and invasion. ASAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membran
Probab=99.67 E-value=3.1e-16 Score=151.28 Aligned_cols=98 Identities=15% Similarity=0.229 Sum_probs=90.1
Q ss_pred hhhhhhHhHHHHHHHHHHhcccCCCCcc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 006831 7 TVAFNGDGNFVLQAREKFLSLRKSTRMD------VAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTM 80 (629)
Q Consensus 7 ~~~Fe~~q~kyd~~~~ky~slsk~k~~~------~~~E~a~eL~~aRk~f~~asldyv~~l~~vq~kk~~e~le~l~~~~ 80 (629)
-+.|||++++||.++.|-...++.+.-+ -..|++++|..+|++|+..+||||.+|+++|.||++++|+.|++||
T Consensus 110 KK~FeK~skDyE~kl~K~ak~~r~k~~~~g~~~~e~eEaae~l~~eRr~Fql~acdYllkin~iq~KK~~diLq~Llsy~ 189 (213)
T cd07640 110 KKQMEKAWKDYEAKIGKLEKERREKQKQHGLIRLDMTDTAEDMQRERRNFQLHMCEYLLKAQESQMKQGPDFLQSLIKFF 189 (213)
T ss_pred HhHHHHHHHHHHHHHHHHhccccccchhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhchHHHHHHHHHH
Confidence 4689999999999999988888777511 2379999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHhhhhchHHHHHH
Q 006831 81 DAHLRFFKQGYELLHQMEPFINQV 104 (629)
Q Consensus 81 ~a~~~ff~~g~e~~~~l~p~~~~l 104 (629)
|||.+||++|++++++|.||+++|
T Consensus 190 hAQ~~fFqqG~~~l~~l~pyik~l 213 (213)
T cd07640 190 HAQHNFFQDGWKAAQNLGPFIEKL 213 (213)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhcC
Confidence 999999999999999999999864
No 40
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=99.65 E-value=9.8e-16 Score=135.76 Aligned_cols=94 Identities=22% Similarity=0.381 Sum_probs=70.4
Q ss_pred eeEeeeeeeccCCCCCCceeEEEEEecCc-----eEEEEeCCCCCCCcCCCcccccCCCCCCccccccccccccccCCCc
Q 006831 178 TIKQGYLSKRSSNLRADWKRRFFVLDSRG-----LLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGV 252 (629)
Q Consensus 178 ~iKqGyL~Krs~~~~k~WkRRwFvL~~~g-----lLyYy~~~~~~~~g~~~~~~~~~~~~~~~g~g~l~~~~~~~~~g~v 252 (629)
+.|+|||.|+ ++|+||||||+... .|.||+++......
T Consensus 2 v~k~GyL~K~-----K~~kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~-------------------------------- 44 (101)
T cd01257 2 VRKSGYLRKQ-----KSMHKRFFVLRAESSGGPARLEYYENEKKFLQK-------------------------------- 44 (101)
T ss_pred ccEEEEEeEe-----cCcEeEEEEEecCCCCCCceEEEECChhhcccc--------------------------------
Confidence 5799999998 78999999999542 79999887542100
Q ss_pred cccccceeeEeecccceeecCCCCCCCcceEEEeeCCcEEEEEeCCHHHHHHHHHHHHH
Q 006831 253 HDEKSVARHTVNLLTSTIKPDADQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKING 311 (629)
Q Consensus 253 ~d~~~~~~~~i~l~~~~vk~~~d~~drrfcF~Iit~~rty~LqAeSe~E~~~WI~aI~~ 311 (629)
...+.+.|.|..|..-....+..++|+|.|.|++++|+|.|+|++|+++||.+|..
T Consensus 45 ---~~~p~~vI~L~~c~~v~~~~d~k~~~~f~i~t~dr~f~l~aese~E~~~Wi~~i~~ 100 (101)
T cd01257 45 ---GSAPKRVIPLESCFNINKRADAKHRHLIALYTRDEYFAVAAENEAEQDSWYQALLE 100 (101)
T ss_pred ---CCCceEEEEccceEEEeeccccccCeEEEEEeCCceEEEEeCCHHHHHHHHHHHhh
Confidence 01244667777665332222344579999999999999999999999999999863
No 41
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.65 E-value=7.2e-16 Score=133.35 Aligned_cols=93 Identities=40% Similarity=0.750 Sum_probs=71.5
Q ss_pred EeeeeeeccCCCCCCceeEEEEEecCceEEEEeCCCCCCCcCCCcccccCCCCCCccccccccccccccCCCccccccce
Q 006831 180 KQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKSVA 259 (629)
Q Consensus 180 KqGyL~Krs~~~~k~WkRRwFvL~~~glLyYy~~~~~~~~g~~~~~~~~~~~~~~~g~g~l~~~~~~~~~g~v~d~~~~~ 259 (629)
|+|||.|+++...+.|++|||+|+ ++.|+||+++... ....
T Consensus 1 k~G~L~kk~~~~~~~W~kr~~~L~-~~~l~~y~~~~~~--------------------------------------~~~~ 41 (94)
T cd01250 1 KQGYLYKRSSKSNKEWKKRWFVLK-NGQLTYHHRLKDY--------------------------------------DNAH 41 (94)
T ss_pred CcceEEEECCCcCCCceEEEEEEe-CCeEEEEcCCccc--------------------------------------cccc
Confidence 589999998764578999999998 5667777665431 0112
Q ss_pred eeEeecccceeecCCCCCCCcceEEEeeCCcEEEEEeCCHHHHHHHHHHHHH
Q 006831 260 RHTVNLLTSTIKPDADQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKING 311 (629)
Q Consensus 260 ~~~i~l~~~~vk~~~d~~drrfcF~Iit~~rty~LqAeSe~E~~~WI~aI~~ 311 (629)
...|++..+++....+..++++||.|++++++|+|+|+|++|+++||.||++
T Consensus 42 ~~~i~l~~~~v~~~~~~~~~~~~f~i~~~~~~~~f~a~s~~~~~~Wi~al~~ 93 (94)
T cd01250 42 VKEIDLRRCTVRHNGKQPDRRFCFEVISPTKTWHFQADSEEERDDWISAIQE 93 (94)
T ss_pred ceEEeccceEEecCccccCCceEEEEEcCCcEEEEECCCHHHHHHHHHHHhc
Confidence 2456666667766544334789999999999999999999999999999975
No 42
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.64 E-value=1.6e-15 Score=139.71 Aligned_cols=92 Identities=30% Similarity=0.666 Sum_probs=72.5
Q ss_pred EeeeeeeccCCCCCCceeEEEEEecCceEEEEeCCCCCCCcCCCcccccCCCCCCccccccccccccccCCCccccccce
Q 006831 180 KQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKSVA 259 (629)
Q Consensus 180 KqGyL~Krs~~~~k~WkRRwFvL~~~glLyYy~~~~~~~~g~~~~~~~~~~~~~~~g~g~l~~~~~~~~~g~v~d~~~~~ 259 (629)
|+|||.|+++.. +.|++|||+|.+ +.|+||+++.+. .+
T Consensus 2 k~G~L~K~~~~~-~~WkkRwfvL~~-~~L~yyk~~~~~----------------------------------------~~ 39 (125)
T cd01252 2 REGWLLKQGGRV-KTWKRRWFILTD-NCLYYFEYTTDK----------------------------------------EP 39 (125)
T ss_pred cEEEEEEeCCCC-CCeEeEEEEEEC-CEEEEEcCCCCC----------------------------------------Cc
Confidence 789999998765 889999999984 568888766431 23
Q ss_pred eeEeecccceeecCCCCCCCcceEEEeeCC---------------------cEEEEEeCCHHHHHHHHHHHHHHHH
Q 006831 260 RHTVNLLTSTIKPDADQSDLRFCFRIISPT---------------------KVYTLQAENTLDQMDWIEKINGVIA 314 (629)
Q Consensus 260 ~~~i~l~~~~vk~~~d~~drrfcF~Iit~~---------------------rty~LqAeSe~E~~~WI~aI~~aI~ 314 (629)
.+.|.|..+.+... ++..+++||+|.+++ ++|+|+|+|++|+.+||.+|+.+|.
T Consensus 40 ~g~I~L~~~~v~~~-~~~~~~~~F~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~~ 114 (125)
T cd01252 40 RGIIPLENVSIREV-EDPSKPFCFELFSPSDKQQIKACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASIS 114 (125)
T ss_pred eEEEECCCcEEEEc-ccCCCCeeEEEECCccccccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHh
Confidence 45666666666653 334678999998766 4899999999999999999999885
No 43
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=99.62 E-value=2.9e-15 Score=134.48 Aligned_cols=92 Identities=24% Similarity=0.438 Sum_probs=66.7
Q ss_pred eeeeeeccCC---CCCCceeEEEEEecCce------EEEEeCCCCCCCcCCCcccccCCCCCCccccccccccccccCCC
Q 006831 181 QGYLSKRSSN---LRADWKRRFFVLDSRGL------LYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGG 251 (629)
Q Consensus 181 qGyL~Krs~~---~~k~WkRRwFvL~~~gl------LyYy~~~~~~~~g~~~~~~~~~~~~~~~g~g~l~~~~~~~~~g~ 251 (629)
+|||.|+++. .++.|+||||||+++++ |+||+++.+.
T Consensus 2 eGwL~K~~~~~~~~~~~WkrRwFvL~~~~l~~~~~~L~Yyk~~~~~---------------------------------- 47 (108)
T cd01266 2 EGWLKKSPPYKLLFRTKWVRRYFVLHCGDRERNLFALEYYKTSRKF---------------------------------- 47 (108)
T ss_pred ceeeeeCCccccccccCcEEEEEEEeccccCCCcceEEEECCCCCC----------------------------------
Confidence 7999999774 24699999999997665 7888876532
Q ss_pred ccccccceeeEeecccceeecC-----CCCCCCcceEEEeeCCcEEEEEeCCHHHHHHHHHHHHHH
Q 006831 252 VHDEKSVARHTVNLLTSTIKPD-----ADQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGV 312 (629)
Q Consensus 252 v~d~~~~~~~~i~l~~~~vk~~-----~d~~drrfcF~Iit~~rty~LqAeSe~E~~~WI~aI~~a 312 (629)
.+.+.|+|..|.+... .......|.|.|.++.|+|+|.|+|++||++||.+|+.+
T Consensus 48 ------k~~g~I~L~~~~~v~~~~~~~~~~~~~~~~f~i~t~~r~y~l~A~s~ee~~~Wi~~I~~~ 107 (108)
T cd01266 48 ------KLEFVIDLESCSQVDPGLLCTAGNCIFGYGFDIETIVRDLYLVAKNEEEMTLWVNCICKL 107 (108)
T ss_pred ------ccceEEECCccEEEcccccccccCcccceEEEEEeCCccEEEEECCHHHHHHHHHHHHhh
Confidence 1234455544433211 111223578999999999999999999999999999753
No 44
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.61 E-value=1.6e-15 Score=133.37 Aligned_cols=91 Identities=24% Similarity=0.365 Sum_probs=71.3
Q ss_pred EeeeeeeccCCCCCCceeEEEEEec---CceEEEEeCCCCCCCcCCCcccccCCCCCCccccccccccccccCCCccccc
Q 006831 180 KQGYLSKRSSNLRADWKRRFFVLDS---RGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEK 256 (629)
Q Consensus 180 KqGyL~Krs~~~~k~WkRRwFvL~~---~glLyYy~~~~~~~~g~~~~~~~~~~~~~~~g~g~l~~~~~~~~~g~v~d~~ 256 (629)
+.|||.|++++..|.||+|||+|.. ++.|||++.+.+.
T Consensus 1 ~~G~l~K~g~~~~K~wK~rwF~l~~~~s~~~l~yf~~~~~~--------------------------------------- 41 (98)
T cd01245 1 KKGNLLKRTKSVTKLWKTLYFALILDGSRSHESLLSSPKKT--------------------------------------- 41 (98)
T ss_pred CCCccccCCCCcccccceeEEEEecCCCCceEEEEcCCCCC---------------------------------------
Confidence 3699999988746999999999973 5889999877542
Q ss_pred cceeeEeecccceeecCCCC-CCCcceEEEeeCCc--EEEEEeCCHHHHHHHHHHHHH
Q 006831 257 SVARHTVNLLTSTIKPDADQ-SDLRFCFRIISPTK--VYTLQAENTLDQMDWIEKING 311 (629)
Q Consensus 257 ~~~~~~i~l~~~~vk~~~d~-~drrfcF~Iit~~r--ty~LqAeSe~E~~~WI~aI~~ 311 (629)
.+.+.|++..+.|++..+. .+++|||+|+++.+ +|+++|++ +|+++||++|+.
T Consensus 42 -~p~gli~l~~~~V~~v~ds~~~r~~cFel~~~~~~~~y~~~a~~-~er~~Wi~~l~~ 97 (98)
T cd01245 42 -KPIGLIDLSDAYLYPVHDSLFGRPNCFQIVERALPTVYYSCRSS-EERDKWIESLQA 97 (98)
T ss_pred -CccceeeccccEEEEccccccCCCeEEEEecCCCCeEEEEeCCH-HHHHHHHHHHhc
Confidence 1224455666677664232 37889999999986 99999999 999999999974
No 45
>cd07642 BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP2 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2) is also known as DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. ASAP2 mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, i
Probab=99.59 E-value=5.4e-15 Score=145.52 Aligned_cols=97 Identities=18% Similarity=0.270 Sum_probs=88.5
Q ss_pred hhhhhHhHHHHHHHHHHhcccC--CCCcchH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 006831 8 VAFNGDGNFVLQAREKFLSLRK--STRMDVA------VVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGT 79 (629)
Q Consensus 8 ~~Fe~~q~kyd~~~~ky~slsk--~k~~~~~------~E~a~eL~~aRk~f~~asldyv~~l~~vq~kk~~e~le~l~~~ 79 (629)
+.||+.++.||.++.|-...++ .|..++. .|++++|..+|+.|+..+||||++|+.|+.|+++++|+.++.|
T Consensus 111 K~fdK~~~dyE~~~~k~ek~~r~~~K~~~~~~~e~~~~E~ae~l~~~R~~fq~~a~dYv~~in~lk~kk~~eiL~~l~~~ 190 (215)
T cd07642 111 KPFDKAWKDYETKVTKIEKEKKEHAKMHGMIRTEISGAEIAEEMEKERRFFQLQMCEYLLKVNEIKIKKGVDLLQNLIKY 190 (215)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccCCccccchhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4599999999999998777766 4554444 6889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHhhhhchHHHHHH
Q 006831 80 MDAHLRFFKQGYELLHQMEPFINQV 104 (629)
Q Consensus 80 ~~a~~~ff~~g~e~~~~l~p~~~~l 104 (629)
|+||.+||++|++++++++||+++|
T Consensus 191 ~~AQ~tfF~qG~k~le~l~p~~~~l 215 (215)
T cd07642 191 FHAQCNFFQDGLKAVETLKPSIEKL 215 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999864
No 46
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.58 E-value=1e-14 Score=125.31 Aligned_cols=90 Identities=31% Similarity=0.563 Sum_probs=70.4
Q ss_pred EeeeeeeccCCCCCCceeEEEEEecCceEEEEeCCCCCCCcCCCcccccCCCCCCccccccccccccccCCCccccccce
Q 006831 180 KQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKSVA 259 (629)
Q Consensus 180 KqGyL~Krs~~~~k~WkRRwFvL~~~glLyYy~~~~~~~~g~~~~~~~~~~~~~~~g~g~l~~~~~~~~~g~v~d~~~~~ 259 (629)
++|||+|+++.. +.|++|||+|+ ++.|+||+++.... ..+
T Consensus 1 ~~G~L~k~~~~~-~~W~~r~~vl~-~~~L~~~~~~~~~~--------------------------------------~~~ 40 (91)
T cd01246 1 VEGWLLKWTNYL-KGWQKRWFVLD-NGLLSYYKNKSSMR--------------------------------------GKP 40 (91)
T ss_pred CeEEEEEecccC-CCceeeEEEEE-CCEEEEEecCccCC--------------------------------------CCc
Confidence 479999997764 88999999998 67788887765310 123
Q ss_pred eeEeecccceeecCCCCCCCcceEEEeeCC-cEEEEEeCCHHHHHHHHHHHHHH
Q 006831 260 RHTVNLLTSTIKPDADQSDLRFCFRIISPT-KVYTLQAENTLDQMDWIEKINGV 312 (629)
Q Consensus 260 ~~~i~l~~~~vk~~~d~~drrfcF~Iit~~-rty~LqAeSe~E~~~WI~aI~~a 312 (629)
.+.+.+..|.+..+ ..++++|.|.+++ ++|+|+|+|++|+.+||.+|+.|
T Consensus 41 ~~~i~l~~~~~~~~---~~~~~~F~i~~~~~~~~~~~a~s~~e~~~Wi~al~~a 91 (91)
T cd01246 41 RGTILLSGAVISED---DSDDKCFTIDTGGDKTLHLRANSEEERQRWVDALELA 91 (91)
T ss_pred eEEEEeceEEEEEC---CCCCcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHhC
Confidence 45666767766553 2347999999998 99999999999999999999864
No 47
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.54 E-value=1.4e-14 Score=127.55 Aligned_cols=99 Identities=24% Similarity=0.460 Sum_probs=70.2
Q ss_pred EeeeeeeccCC-CCCCceeEEEEEec-CceEEEEeCCCCCCCcCCCcccccCCCCCCccccccccccccccCCCcccccc
Q 006831 180 KQGYLSKRSSN-LRADWKRRFFVLDS-RGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKS 257 (629)
Q Consensus 180 KqGyL~Krs~~-~~k~WkRRwFvL~~-~glLyYy~~~~~~~~g~~~~~~~~~~~~~~~g~g~l~~~~~~~~~g~v~d~~~ 257 (629)
|+|||++|.++ ++..|.|.||.++. ++++.+..-.... .++ ..|.+
T Consensus 1 k~GYLy~~~k~~~~~~Wvk~y~~~~~~~~~f~m~~~~q~s--------------~~~-------------~~g~v----- 48 (104)
T cd01249 1 KEGYLYMQEKSKFGGSWTKYYCTYSKETRIFTMVPFNQKT--------------KTD-------------MKGAV----- 48 (104)
T ss_pred CCceEEEEcCCCCCCeEEEEEEEEEcCCcEEEEEeccccc--------------ccc-------------cCccc-----
Confidence 58999999877 44589999999875 3443221100000 000 01111
Q ss_pred ceeeEeecccceeecCCCCCCCcceEEEeeCCc--EEEEEeCCHHHHHHHHHHHHH
Q 006831 258 VARHTVNLLTSTIKPDADQSDLRFCFRIISPTK--VYTLQAENTLDQMDWIEKING 311 (629)
Q Consensus 258 ~~~~~i~l~~~~vk~~~d~~drrfcF~Iit~~r--ty~LqAeSe~E~~~WI~aI~~ 311 (629)
...+.+.|..|++++ .+..||||||+|+++++ +++|||+|+.++..||+||.+
T Consensus 49 ~~~e~~~l~sc~~r~-~~~~dRRFCFei~~~~~~~~~~lQA~Se~~~~~Wi~A~dg 103 (104)
T cd01249 49 AQDETLTLKSCSRRK-TESIDKRFCFDVEVEEKPGVITMQALSEKDRRLWIEAMDG 103 (104)
T ss_pred ccceEEeeeeccccc-cCCccceeeEeeeecCCCCeEEEEecCHHHHHHHHHhhcC
Confidence 123668889999998 47789999999999987 899999999999999999864
No 48
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.54 E-value=2.9e-14 Score=126.82 Aligned_cols=95 Identities=22% Similarity=0.411 Sum_probs=62.2
Q ss_pred eeEeeeeeeccCCCCCCceeEEEEEecCceEEEEeC-CCCCCCcCCCcccccCCCCCCccccccccccccccCCCccccc
Q 006831 178 TIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRK-PWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEK 256 (629)
Q Consensus 178 ~iKqGyL~Krs~~~~k~WkRRwFvL~~~glLyYy~~-~~~~~~g~~~~~~~~~~~~~~~g~g~l~~~~~~~~~g~v~d~~ 256 (629)
++|+|||.|+++. .+.|++|||+|++++.|+||++ +.+...+.
T Consensus 1 v~k~G~L~K~g~~-~~~Wk~R~f~L~~~~~l~~yk~~~~~~~~~~----------------------------------- 44 (102)
T cd01241 1 VVKEGWLHKRGEY-IKTWRPRYFLLKSDGSFIGYKEKPEDGDPFL----------------------------------- 44 (102)
T ss_pred CcEEEEEEeecCC-CCCCeeEEEEEeCCCeEEEEecCCCccCccc-----------------------------------
Confidence 4699999999875 5899999999996665555544 43321100
Q ss_pred cceeeEeecccceeecCCCCCCCcceEEEe------eCCcEEEEEeCCHHHHHHHHHHHHHHH
Q 006831 257 SVARHTVNLLTSTIKPDADQSDLRFCFRII------SPTKVYTLQAENTLDQMDWIEKINGVI 313 (629)
Q Consensus 257 ~~~~~~i~l~~~~vk~~~d~~drrfcF~Ii------t~~rty~LqAeSe~E~~~WI~aI~~aI 313 (629)
.+...+.+..|.+... +..++++|.|. ++.| +|+|+|++|+++||.||+.++
T Consensus 45 -i~l~~~~v~~~~~~~~--~~~~~~~F~i~~~~~~~~~~r--~f~a~s~ee~~eWi~ai~~v~ 102 (102)
T cd01241 45 -PPLNNFSVAECQLMKT--ERPRPNTFIIRCLQWTTVIER--TFHVESPEEREEWIHAIQTVA 102 (102)
T ss_pred -cccCCeEEeeeeeeec--cCCCcceEEEEeccCCcccCE--EEEeCCHHHHHHHHHHHHhhC
Confidence 0011223334554321 23567899997 2345 457999999999999998763
No 49
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=99.54 E-value=1.1e-13 Score=119.82 Aligned_cols=97 Identities=34% Similarity=0.676 Sum_probs=75.7
Q ss_pred eeEeeeeeeccCCCCCCceeEEEEEecCceEEEEeCCCCCCCcCCCcccccCCCCCCccccccccccccccCCCcccccc
Q 006831 178 TIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKS 257 (629)
Q Consensus 178 ~iKqGyL~Krs~~~~k~WkRRwFvL~~~glLyYy~~~~~~~~g~~~~~~~~~~~~~~~g~g~l~~~~~~~~~g~v~d~~~ 257 (629)
++++|||.+++.. .+.|++|||+|.+ +.|+||+++... ...
T Consensus 1 ~~~~G~L~~~~~~-~~~wk~r~~vL~~-~~L~~~~~~~~~-------------------------------------~~~ 41 (104)
T PF00169_consen 1 CIKEGWLLKKSSS-RKKWKKRYFVLRD-SYLLYYKSSKDK-------------------------------------SDS 41 (104)
T ss_dssp EEEEEEEEEEESS-SSSEEEEEEEEET-TEEEEESSTTTT-------------------------------------TES
T ss_pred CEEEEEEEEECCC-CCCeEEEEEEEEC-CEEEEEecCccc-------------------------------------cce
Confidence 4789999999844 5889999999985 567777666421 002
Q ss_pred ceeeEeecccceeecCCCC-----CCCcceEEEeeCCc-EEEEEeCCHHHHHHHHHHHHHHH
Q 006831 258 VARHTVNLLTSTIKPDADQ-----SDLRFCFRIISPTK-VYTLQAENTLDQMDWIEKINGVI 313 (629)
Q Consensus 258 ~~~~~i~l~~~~vk~~~d~-----~drrfcF~Iit~~r-ty~LqAeSe~E~~~WI~aI~~aI 313 (629)
.+...|++..+.+....+. ...++||.|.++.+ +|+|+|+|++++..||.+|+.++
T Consensus 42 ~~~~~i~l~~~~v~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 42 KPKGSIPLDDCTVRPDPSSDFLSNKKRKNCFEITTPNGKSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp SESEEEEGTTEEEEEETSSTSTSTSSSSSEEEEEETTSEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred eeeEEEEecCceEEEcCccccccccCCCcEEEEEeCCCcEEEEEcCCHHHHHHHHHHHHHHh
Confidence 3446677777777665443 46789999999996 99999999999999999999886
No 50
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.51 E-value=8.7e-14 Score=122.70 Aligned_cols=88 Identities=17% Similarity=0.179 Sum_probs=61.3
Q ss_pred eeeeeccCC---CCCCceeEEEEEecCceEEEEeCCCCCCCcCCCcccccCCCCCCccccccccccccccCCCccccccc
Q 006831 182 GYLSKRSSN---LRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKSV 258 (629)
Q Consensus 182 GyL~Krs~~---~~k~WkRRwFvL~~~glLyYy~~~~~~~~g~~~~~~~~~~~~~~~g~g~l~~~~~~~~~g~v~d~~~~ 258 (629)
|.|.||+.. ..+.||+|||+|+ +..|+||+++...+
T Consensus 5 ~~~~kr~~~~~~~~~n~KkRwF~Lt-~~~L~Y~k~~~~~~---------------------------------------- 43 (98)
T cd01244 5 LQQVDRSRLAWKKVLHFKKRYFQLT-TTHLSWAKDVQCKK---------------------------------------- 43 (98)
T ss_pred cEEEEcccCCCccCcCCceeEEEEC-CCEEEEECCCCCce----------------------------------------
Confidence 455566533 2368999999998 56688887665422
Q ss_pred eeeEeecc--cceeecCCCCCCCcceEEEeeCCcEEEEEeCCHHHHHHHHHHHHH
Q 006831 259 ARHTVNLL--TSTIKPDADQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKING 311 (629)
Q Consensus 259 ~~~~i~l~--~~~vk~~~d~~drrfcF~Iit~~rty~LqAeSe~E~~~WI~aI~~ 311 (629)
.+.|+|. .+...+......+.|+|+|++|+|+|+|||+|++|+++||.||+.
T Consensus 44 -~g~I~L~~i~~ve~v~~~~~~~~~~fqivt~~r~~yi~a~s~~E~~~Wi~al~k 97 (98)
T cd01244 44 -SALIKLAAIKGTEPLSDKSFVNVDIITIVCEDDTMQLQFEAPVEATDWLNALEK 97 (98)
T ss_pred -eeeEEccceEEEEEcCCcccCCCceEEEEeCCCeEEEECCCHHHHHHHHHHHhc
Confidence 1223332 233333222334569999999999999999999999999999975
No 51
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.50 E-value=1.9e-13 Score=121.33 Aligned_cols=99 Identities=21% Similarity=0.302 Sum_probs=74.3
Q ss_pred eeEeeeeeeccCCCCCCceeEEEEEecCceEEEEeCCCCCCCcCCCcccccCCCCCCccccccccccccccCCCcccccc
Q 006831 178 TIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKS 257 (629)
Q Consensus 178 ~iKqGyL~Krs~~~~k~WkRRwFvL~~~glLyYy~~~~~~~~g~~~~~~~~~~~~~~~g~g~l~~~~~~~~~g~v~d~~~ 257 (629)
.+|+|||.|.+... +.|+.|||+|.++ +|.|++..... + ...-
T Consensus 2 ~ikeG~L~K~~~~~-~~~k~RyffLFnd-~Ll~~~~~~~~--~---------------------------------~~~y 44 (101)
T cd01219 2 LLKEGSVLKISSTT-EKTEERYLFLFND-LLLYCVPRKMI--G---------------------------------GSKF 44 (101)
T ss_pred cccceEEEEEecCC-CCceeEEEEEeCC-EEEEEEccccc--C---------------------------------CCcE
Confidence 36899999998764 7899999999977 45555432110 0 0001
Q ss_pred ceeeEeecccceeecCCCCCCCcceEEEeeCCcEEEEEeCCHHHHHHHHHHHHHHHH
Q 006831 258 VARHTVNLLTSTIKPDADQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVIA 314 (629)
Q Consensus 258 ~~~~~i~l~~~~vk~~~d~~drrfcF~Iit~~rty~LqAeSe~E~~~WI~aI~~aI~ 314 (629)
.....+++..+.|... ++.+.+++|.|.+++|+|+|+|+|++|+++||++|+.+|.
T Consensus 45 ~~~~~i~l~~~~v~~~-~~~~~~~~F~I~~~~rsf~l~A~s~eEk~~W~~ai~~~i~ 100 (101)
T cd01219 45 KVRARIDVSGMQVCEG-DNLERPHSFLVSGKQRCLELQARTQKEKNDWVQAIFSIID 100 (101)
T ss_pred EEEEEEecccEEEEeC-CCCCcCceEEEecCCcEEEEEcCCHHHHHHHHHHHHHHhh
Confidence 2346677777777643 3456789999999999999999999999999999999985
No 52
>cd07609 BAR_SIP3_fungi The Bin/Amphiphysin/Rvs (BAR) domain of fungal Snf1p-interacting protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of mostly uncharacterized fungal proteins with similarity to Saccharomyces cerevisiae Snf1p-interacting protein 3 (SIP3). These proteins contain an N-terminal BAR domain followed by a Pleckstrin Homology (PH) domain. SIP3 interacts with SNF1 protein kinase and activates transcription when anchored to DNA. It may function in the SNF1 pathway. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.49 E-value=1e-13 Score=138.47 Aligned_cols=104 Identities=13% Similarity=0.071 Sum_probs=87.1
Q ss_pred hhhhhhHhHHHHHHHHHHhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 006831 7 TVAFNGDGNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRF 86 (629)
Q Consensus 7 ~~~Fe~~q~kyd~~~~ky~slsk~k~~~~~~E~a~eL~~aRk~f~~asldyv~~l~~vq~kk~~e~le~l~~~~~a~~~f 86 (629)
-++||++|++||.+++||++++|+|+|..++|++++|+++|++|++||||||++|+.|+...+.-+++.+...+......
T Consensus 109 rk~Fd~~q~kyD~~L~r~~~~sk~K~p~~l~Eda~qL~e~Rk~Y~~aSLDyv~qi~~lq~~lDkllv~~~~~~wr~~~~~ 188 (214)
T cd07609 109 RKNFEYYQRKYDSMLARYVAQSKTKEPSSLREDAFQLFEARKAYLKASLDLVIAIPQLRLTLDKLLVDIITDLWREKKRT 188 (214)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 47899999999999999999999999999999999999999999999999999999999999988888888888777666
Q ss_pred HhhhhHhhhhchHHHHHHHHHHHHHHH
Q 006831 87 FKQGYELLHQMEPFINQVLAYAQQSRE 113 (629)
Q Consensus 87 f~~g~e~~~~l~p~~~~l~~~~q~~r~ 113 (629)
+......+. |-+.+....++.|.+
T Consensus 189 ~~~~~~~~~---~~~~~~~~ri~~W~~ 212 (214)
T cd07609 189 HDDSGSKFD---PKWGEEMERIRGWSE 212 (214)
T ss_pred Ccccccccc---HHHHHHHHHHHHHHh
Confidence 665544444 344444444555543
No 53
>PF15409 PH_8: Pleckstrin homology domain
Probab=99.41 E-value=1.6e-12 Score=112.05 Aligned_cols=87 Identities=26% Similarity=0.498 Sum_probs=72.7
Q ss_pred eeeeeccCCCCCCceeEEEEEe-cCceEEEEeCCCCCCCcCCCcccccCCCCCCccccccccccccccCCCcccccccee
Q 006831 182 GYLSKRSSNLRADWKRRFFVLD-SRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKSVAR 260 (629)
Q Consensus 182 GyL~Krs~~~~k~WkRRwFvL~-~~glLyYy~~~~~~~~g~~~~~~~~~~~~~~~g~g~l~~~~~~~~~g~v~d~~~~~~ 260 (629)
|||.|+..+..+.|+||||+|+ ..|.|.||.++.+. ..+
T Consensus 1 G~llKkrr~~lqG~~kRyFvL~~~~G~LsYy~~~~~~----------------------------------------~~r 40 (89)
T PF15409_consen 1 GWLLKKRRKPLQGWHKRYFVLDFEKGTLSYYRNQNSG----------------------------------------KLR 40 (89)
T ss_pred CcceeeccccCCCceeEEEEEEcCCcEEEEEecCCCC----------------------------------------eeE
Confidence 8999997777799999999995 58999999877541 345
Q ss_pred eEeecccceeecCCCCCCCcceEEEeeCCcEEEEEeCCHHHHHHHHHHHHHH
Q 006831 261 HTVNLLTSTIKPDADQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGV 312 (629)
Q Consensus 261 ~~i~l~~~~vk~~~d~~drrfcF~Iit~~rty~LqAeSe~E~~~WI~aI~~a 312 (629)
+.|++..+.+... .+..+|.|.+...+|+|.|.|++|.+.|+.||+.+
T Consensus 41 Gsi~v~~a~is~~----~~~~~I~idsg~~i~hLKa~s~~~f~~Wv~aL~~a 88 (89)
T PF15409_consen 41 GSIDVSLAVISAN----KKSRRIDIDSGDEIWHLKAKSQEDFQRWVSALQKA 88 (89)
T ss_pred eEEEccceEEEec----CCCCEEEEEcCCeEEEEEcCCHHHHHHHHHHHHhc
Confidence 7788888888764 23568999999999999999999999999999864
No 54
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=99.41 E-value=2.1e-12 Score=116.81 Aligned_cols=106 Identities=29% Similarity=0.525 Sum_probs=55.5
Q ss_pred EeeeeeeccCCCCCCceeEEEEEecCceEEEEeCCCCCCCcCCCcccccCCCCCCccccccccccccccCCCccccccce
Q 006831 180 KQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKSVA 259 (629)
Q Consensus 180 KqGyL~Krs~~~~k~WkRRwFvL~~~glLyYy~~~~~~~~g~~~~~~~~~~~~~~~g~g~l~~~~~~~~~g~v~d~~~~~ 259 (629)
|+|||+|++....+.|++|||+|..+|.|.||+.+.....+ .+.. +..... ..
T Consensus 1 k~G~l~K~~~~~~kgWk~RwFiL~k~~~L~YyK~~~~~~~~--~i~~-------~~~~~~------------------~~ 53 (112)
T PF15413_consen 1 KEGYLYKWGNKFGKGWKKRWFILRKDGVLSYYKIPRDKKDV--RIIG-------EESSRV------------------IR 53 (112)
T ss_dssp EEEEEEE--TTS-S--EEEEEEEE-TTEEEEESS----------------------TT-S------------------B-
T ss_pred CCceEEEecCCCCcCccccEEEEEeCCEEEEeecccccccc--cccc-------cchhce------------------Ee
Confidence 68999999887568999999999867889999884332100 0000 000000 00
Q ss_pred eeEee--cccceeec----CCCCCCCcceEEEeeCCcEEEEEeCCHHHHHHHHHHHHHH
Q 006831 260 RHTVN--LLTSTIKP----DADQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGV 312 (629)
Q Consensus 260 ~~~i~--l~~~~vk~----~~d~~drrfcF~Iit~~rty~LqAeSe~E~~~WI~aI~~a 312 (629)
.+.+. .....+.. .+........|.|.||+|+|+|.|++.+|+.+||+||+.+
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~T~~kt~~l~~~t~~d~~~Wi~aL~~~ 112 (112)
T PF15413_consen 54 KGDWSISRRSSRIQGIKDKNPFGEIHLKVFSIFTPTKTFHLRCETREDRYDWIEALQEA 112 (112)
T ss_dssp SEEEE---GGGT-EEEES-T--SS-SSEEEEEE-SS-EEEEEESSHHHHHHHHHHHHH-
T ss_pred ecccCcccccccccccccCCcccCcCCCCcEEECCCcEEEEEECCHHHHHHHHHHHHhC
Confidence 00000 00000000 1112223577999999999999999999999999999864
No 55
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=1.1e-12 Score=131.87 Aligned_cols=95 Identities=27% Similarity=0.562 Sum_probs=72.3
Q ss_pred eeEeeeeeeccCCCCCCceeEEEEEecCceEEEEeCCCCCCCcCCCcccccCCCCCCccccccccccccccCCCcccccc
Q 006831 178 TIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKS 257 (629)
Q Consensus 178 ~iKqGyL~Krs~~~~k~WkRRwFvL~~~glLyYy~~~~~~~~g~~~~~~~~~~~~~~~g~g~l~~~~~~~~~g~v~d~~~ 257 (629)
+.++|||+|.+++..++||||||+|.+ ..|||+.--.++
T Consensus 260 pdREGWLlKlgg~rvktWKrRWFiLtd-NCLYYFe~tTDK---------------------------------------- 298 (395)
T KOG0930|consen 260 PDREGWLLKLGGNRVKTWKRRWFILTD-NCLYYFEYTTDK---------------------------------------- 298 (395)
T ss_pred ccccceeeeecCCcccchhheeEEeec-ceeeeeeeccCC----------------------------------------
Confidence 678999999998766899999999984 568888654432
Q ss_pred ceeeEeecccceeecCCCCCCCcceEEEeeCC----------------------cEEEEEeCCHHHHHHHHHHHHHHHH
Q 006831 258 VARHTVNLLTSTIKPDADQSDLRFCFRIISPT----------------------KVYTLQAENTLDQMDWIEKINGVIA 314 (629)
Q Consensus 258 ~~~~~i~l~~~~vk~~~d~~drrfcF~Iit~~----------------------rty~LqAeSe~E~~~WI~aI~~aI~ 314 (629)
-+++.|.|..-.|+. .++..++|||+|..|. .+|.++|.+.+|+++||.+|+.+|+
T Consensus 299 EPrGIIpLeNlsir~-VedP~kP~cfEly~ps~~gq~IKACKTe~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is 376 (395)
T KOG0930|consen 299 EPRGIIPLENLSIRE-VEDPKKPNCFELYIPSNKGQVIKACKTEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAIS 376 (395)
T ss_pred CCCcceeccccceee-ccCCCCCCeEEEecCCCCcCeeeeecccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHHhc
Confidence 122334444444443 3566789999998754 2699999999999999999999886
No 56
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.38 E-value=5.3e-12 Score=111.66 Aligned_cols=97 Identities=24% Similarity=0.298 Sum_probs=71.8
Q ss_pred eeEeeeeeeccCCCCCCceeEEEEEecCceEEEEeCCCCCCCcCCCcccccCCCCCCccccccccccccccCCCcccccc
Q 006831 178 TIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKS 257 (629)
Q Consensus 178 ~iKqGyL~Krs~~~~k~WkRRwFvL~~~glLyYy~~~~~~~~g~~~~~~~~~~~~~~~g~g~l~~~~~~~~~g~v~d~~~ 257 (629)
.+|+|+|+|.+++ +.|+ |||+|-+|-+||+.+..... ..-
T Consensus 2 ~ikEG~L~K~~~k--~~~~-R~~FLFnD~LlY~~~~~~~~-------------------------------------~~y 41 (99)
T cd01220 2 FIRQGCLLKLSKK--GLQQ-RMFFLFSDLLLYTSKSPTDQ-------------------------------------NSF 41 (99)
T ss_pred eeeEEEEEEEeCC--CCce-EEEEEccceEEEEEeecCCC-------------------------------------ceE
Confidence 4799999999764 4555 55666667777776543221 001
Q ss_pred ceeeEeecccceeecCCCCCCCcceEEEeeCCcEEEEEeCCHHHHHHHHHHHHHHHH
Q 006831 258 VARHTVNLLTSTIKPDADQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVIA 314 (629)
Q Consensus 258 ~~~~~i~l~~~~vk~~~d~~drrfcF~Iit~~rty~LqAeSe~E~~~WI~aI~~aI~ 314 (629)
..++.++|..+.|+...+..+.+|||+|.++.++|+|+|.|++|+.+||++|+.+|.
T Consensus 42 ~~~~~i~L~~~~V~~~~~~~~~~~~F~I~~~~ks~~l~A~s~~Ek~~Wi~~i~~aI~ 98 (99)
T cd01220 42 RILGHLPLRGMLTEESEHEWGVPHCFTIFGGQCAITVAASTRAEKEKWLADLSKAIA 98 (99)
T ss_pred EEEEEEEcCceEEeeccCCcCCceeEEEEcCCeEEEEECCCHHHHHHHHHHHHHHhh
Confidence 245677787777765433345689999999999999999999999999999999985
No 57
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.31 E-value=9.1e-12 Score=110.70 Aligned_cols=83 Identities=17% Similarity=0.318 Sum_probs=58.9
Q ss_pred CCCceeEEEEEecCceEEEEeCCCCCCCcCCCcccccCCCCCCccccccccccccccCCCccccccceeeEeecccceee
Q 006831 192 RADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKSVARHTVNLLTSTIK 271 (629)
Q Consensus 192 ~k~WkRRwFvL~~~glLyYy~~~~~~~~g~~~~~~~~~~~~~~~g~g~l~~~~~~~~~g~v~d~~~~~~~~i~l~~~~vk 271 (629)
.+.|++|||+|+ ++.|+||+++...... ......|++..+.+.
T Consensus 20 ~~~Wk~r~~vL~-~~~L~~ykd~~~~~~~------------------------------------~~~~~~i~l~~~~i~ 62 (104)
T cd01253 20 NRSWDNVYGVLC-GQSLSFYKDEKMAAEN------------------------------------VHGEPPVDLTGAQCE 62 (104)
T ss_pred CCCcceEEEEEe-CCEEEEEecCcccccC------------------------------------CCCCCcEeccCCEEE
Confidence 478999999998 4567777765431000 000123455456665
Q ss_pred cCCCCCCCcceEEEeeCC-cEEEEEeCCHHHHHHHHHHHHH
Q 006831 272 PDADQSDLRFCFRIISPT-KVYTLQAENTLDQMDWIEKING 311 (629)
Q Consensus 272 ~~~d~~drrfcF~Iit~~-rty~LqAeSe~E~~~WI~aI~~ 311 (629)
...+...++++|.|.+++ ++|+|||+|++++.+||.+|+.
T Consensus 63 ~~~~~~k~~~~F~l~~~~~~~~~f~a~s~e~~~~Wi~aL~~ 103 (104)
T cd01253 63 VASDYTKKKHVFRLRLPDGAEFLFQAPDEEEMSSWVRALKS 103 (104)
T ss_pred ecCCcccCceEEEEEecCCCEEEEECCCHHHHHHHHHHHhc
Confidence 544445678999998766 8999999999999999999975
No 58
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.29 E-value=1.3e-11 Score=112.83 Aligned_cols=94 Identities=19% Similarity=0.350 Sum_probs=67.4
Q ss_pred Eeeeeee-ccCCCCCCceeEEEEEecCceEEEEeCCCCCCCcCCCcccccCCCCCCccccccccccccccCCCccccccc
Q 006831 180 KQGYLSK-RSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKSV 258 (629)
Q Consensus 180 KqGyL~K-rs~~~~k~WkRRwFvL~~~glLyYy~~~~~~~~g~~~~~~~~~~~~~~~g~g~l~~~~~~~~~g~v~d~~~~ 258 (629)
-.|||.. +..+..++|+||||+|+ ++.|+|++.+.+.. ...
T Consensus 3 ~~GfL~~~q~~~~~k~W~RRWFvL~-g~~L~y~k~p~d~~-------------------------------------~~~ 44 (122)
T cd01263 3 YHGFLTMFEDTSGFGAWHRRWCALE-GGEIKYWKYPDDEK-------------------------------------RKG 44 (122)
T ss_pred cceeEEEEeccCCCCCceEEEEEEe-CCEEEEEcCCCccc-------------------------------------cCC
Confidence 4699996 43445589999999998 78899998776520 023
Q ss_pred eeeEeecccceeecC----CCCCCCcceEEEeeC--C-----------------cE-EEEEeCCHHHHHHHHHHHHH
Q 006831 259 ARHTVNLLTSTIKPD----ADQSDLRFCFRIISP--T-----------------KV-YTLQAENTLDQMDWIEKING 311 (629)
Q Consensus 259 ~~~~i~l~~~~vk~~----~d~~drrfcF~Iit~--~-----------------rt-y~LqAeSe~E~~~WI~aI~~ 311 (629)
+.+.|+|..|.+... .+...|++.|.|... . |+ |+|.|||.+|+++||.+|+.
T Consensus 45 Plg~I~L~~c~~~~v~~~~r~~c~Rp~tF~i~~~~~~~~~~~~~~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain~ 121 (122)
T cd01263 45 PTGLIDLSTCTSSEGASAVRDICARPNTFHLDVWRPKMETDDETLVSQCRRGIERLRVMLSADTKEERQTWLSLLNS 121 (122)
T ss_pred ceEEEEhhhCcccccccCChhhcCCCCeEEEEEecccccccccceeeccCCceeEEEEEEecCCHHHHHHHHHHHhc
Confidence 446677777665432 134568899999642 1 22 67999999999999999985
No 59
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.27 E-value=2.7e-11 Score=111.13 Aligned_cols=37 Identities=16% Similarity=0.413 Sum_probs=33.5
Q ss_pred CCCCcceEEEeeCCcEEEEEeCCHHHHHHHHHHHHHH
Q 006831 276 QSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGV 312 (629)
Q Consensus 276 ~~drrfcF~Iit~~rty~LqAeSe~E~~~WI~aI~~a 312 (629)
...+++.|.|.+++|+|.|.|+|+.++.+||++|+.+
T Consensus 85 ~~~~~~~~~i~t~~R~~~l~a~s~~~~~~Wi~~i~~a 121 (121)
T cd01254 85 ITGLRHGLKITNSNRSLKLKCKSSRKLKQWMASIEDA 121 (121)
T ss_pred cCCCceEEEEEcCCcEEEEEeCCHHHHHHHHHHHHhC
Confidence 3466899999999999999999999999999999853
No 60
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=99.23 E-value=1.4e-10 Score=98.60 Aligned_cols=97 Identities=29% Similarity=0.597 Sum_probs=71.1
Q ss_pred eEeeeeeeccCCCCCCceeEEEEEecCceEEEEeCCCCCCCcCCCcccccCCCCCCccccccccccccccCCCccccccc
Q 006831 179 IKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKSV 258 (629)
Q Consensus 179 iKqGyL~Krs~~~~k~WkRRwFvL~~~glLyYy~~~~~~~~g~~~~~~~~~~~~~~~g~g~l~~~~~~~~~g~v~d~~~~ 258 (629)
+++|||.++.......|++|||+|.+ +.|+||+...... + ..
T Consensus 2 ~~~G~l~~~~~~~~~~~~~~~~~L~~-~~l~~~~~~~~~~-~------------------------------------~~ 43 (102)
T smart00233 2 IKEGWLYKKSGGKKKSWKKRYFVLFN-STLLYYKSEKAKK-D------------------------------------YK 43 (102)
T ss_pred ceeEEEEEeCCCccCCceEEEEEEEC-CEEEEEeCCCccc-c------------------------------------CC
Confidence 57999999976345789999999996 5566666553310 0 11
Q ss_pred eeeEeecccceeecCCCCC--CCcceEEEeeCCc-EEEEEeCCHHHHHHHHHHHHHHH
Q 006831 259 ARHTVNLLTSTIKPDADQS--DLRFCFRIISPTK-VYTLQAENTLDQMDWIEKINGVI 313 (629)
Q Consensus 259 ~~~~i~l~~~~vk~~~d~~--drrfcF~Iit~~r-ty~LqAeSe~E~~~WI~aI~~aI 313 (629)
....+.+..+.+....+.. ...++|.|.++++ +|+|+|+|++|+..|+.+|+.++
T Consensus 44 ~~~~i~l~~~~v~~~~~~~~~~~~~~f~l~~~~~~~~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 44 PKGSIDLSGITVREAPDPDSAKKPHCFEIKTADRRSYLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred CceEEECCcCEEEeCCCCccCCCceEEEEEecCCceEEEEcCCHHHHHHHHHHHHHhh
Confidence 2345666666665543321 4689999999998 99999999999999999998775
No 61
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.23 E-value=4.9e-11 Score=105.60 Aligned_cols=81 Identities=17% Similarity=0.367 Sum_probs=65.9
Q ss_pred CCceeEEEEEecCceEEEEeCCCCCCCcCCCcccccCCCCCCccccccccccccccCCCccccccceeeEeecccceeec
Q 006831 193 ADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKSVARHTVNLLTSTIKP 272 (629)
Q Consensus 193 k~WkRRwFvL~~~glLyYy~~~~~~~~g~~~~~~~~~~~~~~~g~g~l~~~~~~~~~g~v~d~~~~~~~~i~l~~~~vk~ 272 (629)
+.||||||+|+ ++.|+||+++++. ...+.+.+++..|.|.+
T Consensus 18 K~~KrrwF~lk-~~~L~YyK~kee~--------------------------------------~~~p~i~lnl~gcev~~ 58 (106)
T cd01237 18 KGYKQYWFTFR-DTSISYYKSKEDS--------------------------------------NGAPIGQLNLKGCEVTP 58 (106)
T ss_pred hhheeEEEEEe-CCEEEEEccchhc--------------------------------------CCCCeEEEecCceEEcc
Confidence 67999999998 7888888876542 01244778889999987
Q ss_pred CCCCCCCcceEEEeeCC----cEEEEEeCCHHHHHHHHHHHHHH
Q 006831 273 DADQSDLRFCFRIISPT----KVYTLQAENTLDQMDWIEKINGV 312 (629)
Q Consensus 273 ~~d~~drrfcF~Iit~~----rty~LqAeSe~E~~~WI~aI~~a 312 (629)
+..-..++|+|.+.+|. ++|.|.|+|++++..||+|++-|
T Consensus 59 dv~~~~~kf~I~l~~ps~~~~r~y~l~cdsEeqya~Wmaa~rla 102 (106)
T cd01237 59 DVNVAQQKFHIKLLIPTAEGMNEVWLRCDNEKQYAKWMAACRLA 102 (106)
T ss_pred cccccccceEEEEecCCccCCeEEEEECCCHHHHHHHHHHHHHh
Confidence 64334567999999988 99999999999999999999855
No 62
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.22 E-value=8.2e-11 Score=107.06 Aligned_cols=102 Identities=20% Similarity=0.360 Sum_probs=73.0
Q ss_pred Eeeeeeecc------CC---CCCCceeEEEEEecCceEEEEeCCCCCCCcCCCcccccCCCCCCccccccccccccccCC
Q 006831 180 KQGYLSKRS------SN---LRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHG 250 (629)
Q Consensus 180 KqGyL~Krs------~~---~~k~WkRRwFvL~~~glLyYy~~~~~~~~g~~~~~~~~~~~~~~~g~g~l~~~~~~~~~g 250 (629)
|+|+|..+- ++ .++.|+++||||++ +.|+.|+++... +..
T Consensus 2 ~~g~l~RK~~~~~~~kk~~~~~R~Wk~~y~vL~g-~~L~~yKDe~~~--~~~---------------------------- 50 (117)
T cd01230 2 KHGALMRKVHADPDCRKTPFGKRSWKMFYGILRG-LVLYLQKDEHKP--GKS---------------------------- 50 (117)
T ss_pred CCcEEEEEEEecCCCccCCCCCCcceEEEEEEEC-CEEEEEccCccc--ccc----------------------------
Confidence 578887542 11 24689999999985 667778776431 000
Q ss_pred CccccccceeeEeecccceeecCCCCCCCcceEEEeeCC-cEEEEEeCCHHHHHHHHHHHHHHHHH
Q 006831 251 GVHDEKSVARHTVNLLTSTIKPDADQSDLRFCFRIISPT-KVYTLQAENTLDQMDWIEKINGVIAS 315 (629)
Q Consensus 251 ~v~d~~~~~~~~i~l~~~~vk~~~d~~drrfcF~Iit~~-rty~LqAeSe~E~~~WI~aI~~aI~~ 315 (629)
+.. ......|.+..++..+..+...|++.|.|.+++ +.|+|||.+++||+.||.+|+.+++.
T Consensus 51 -~~~--~~~~~~Isi~~a~~~ia~dy~Kr~~VF~L~~~~g~~~lfqA~~~ee~~~Wi~~I~~~~~~ 113 (117)
T cd01230 51 -LSE--TELKNAISIHHALATRASDYSKKPHVFRLRTADWREFLFQTSSLKELQSWIERINVVAAA 113 (117)
T ss_pred -ccc--ccccceEEeccceeEeeccccCCCcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 000 011245666666666666778899999999997 89999999999999999999988764
No 63
>KOG0702 consensus Predicted GTPase-activating protein [Signal transduction mechanisms]
Probab=99.11 E-value=7.6e-11 Score=126.78 Aligned_cols=120 Identities=23% Similarity=0.518 Sum_probs=102.3
Q ss_pred cchHHHHHhccCCCCCCCCCCCCC-CceecccceeEeccccccccccCcccceeeEeecCCCcCChhHHHHHhhcChhHH
Q 006831 391 EKPIDLLRRVYGNNKCADCGASEP-DWASLNLGVLICIQCSGVHRNLGVHISKVRSLTLDVKVWEPSVLNLFQSLGNIYA 469 (629)
Q Consensus 391 ~~~~~~l~~~p~N~~CaDCg~~~p-~w~s~n~Gv~lC~~CsgvHR~LG~hiSkVrSl~lD~~~w~~~~l~~~~~~GN~~~ 469 (629)
|+.++.+.++|+|++|++|...-+ +|+++.-|-|+|..|+|.-|.|.. -.+|+|+.|- .++.-++..++..||..+
T Consensus 13 ek~iR~l~kLP~NrrC~nCnsl~~~t~~~~~~g~fv~~~~sg~ls~l~~-ahRvksiSmt--tft~qevs~lQshgNq~~ 89 (524)
T KOG0702|consen 13 EKEIRRLLKLPENRRCINCNSLVAATYVVYTVGSFVCTMCSGLLSGLNP-AHRVKSISMT--TFTDQEVSFLQSHGNQVC 89 (524)
T ss_pred HHHHHHHhcCCCCCceeeccccccceEEEeeccceeeeccchhhccCCC-ccccceeeee--eccccchHHHhhcchhhh
Confidence 788999999999999999999887 999999999999999999999954 4699999998 578889999999999999
Q ss_pred HHHHHhhhccCCCCCccccccCccccccccccccCCCCCCCCHHHHHHHHHHHhccCcccccCCCC
Q 006831 470 NSVWEELLRIGNNSLTDERHMGFSRTDKQKRFIVRKPNPDDSISVKEQYIHAKYAEKIFVHKRKDH 535 (629)
Q Consensus 470 N~i~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~~~~re~fI~~KY~~k~f~~~~~~~ 535 (629)
..||-........ .-|+..++..+| +||+.||+.|+|+.+....
T Consensus 90 k~i~fkl~D~q~S---------------------~vPD~rn~~~~k-ef~q~~y~~kr~~v~~n~~ 133 (524)
T KOG0702|consen 90 KEIWFKLFDFQRS---------------------NVPDSRNPQKVK-EFQQEKYVKKRYYVPKNQM 133 (524)
T ss_pred hhhhhcchhhhhc---------------------cCCCcccchhhH-HHHhhhhccceeecCcccc
Confidence 9999877665321 345555565665 7999999999999886543
No 64
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.07 E-value=6.1e-10 Score=93.73 Aligned_cols=94 Identities=37% Similarity=0.681 Sum_probs=67.0
Q ss_pred EeeeeeeccCCCCCCceeEEEEEecCceEEEEeCCCCCCCcCCCcccccCCCCCCccccccccccccccCCCccccccce
Q 006831 180 KQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKSVA 259 (629)
Q Consensus 180 KqGyL~Krs~~~~k~WkRRwFvL~~~glLyYy~~~~~~~~g~~~~~~~~~~~~~~~g~g~l~~~~~~~~~g~v~d~~~~~ 259 (629)
++|||.++.......|++|||+|.++.+++ |....... ...+
T Consensus 1 ~~G~l~~~~~~~~~~w~~~~~~L~~~~l~~-~~~~~~~~-------------------------------------~~~~ 42 (96)
T cd00821 1 KEGYLLKKTGKLRKGWKRRWFVLFNDLLLY-YKKKSSKK-------------------------------------SYKP 42 (96)
T ss_pred CcchhhhhhChhhCCccEEEEEEECCEEEE-EECCCCCc-------------------------------------CCCC
Confidence 379999886543368999999999655444 44332210 0122
Q ss_pred eeEeecccceeecCCCCCCCcceEEEeeCC-cEEEEEeCCHHHHHHHHHHHHH
Q 006831 260 RHTVNLLTSTIKPDADQSDLRFCFRIISPT-KVYTLQAENTLDQMDWIEKING 311 (629)
Q Consensus 260 ~~~i~l~~~~vk~~~d~~drrfcF~Iit~~-rty~LqAeSe~E~~~WI~aI~~ 311 (629)
...+.+..+.+....+....+++|.|++.. +.|+|+|+|++|+..|+.+|+.
T Consensus 43 ~~~i~l~~~~v~~~~~~~~~~~~f~i~~~~~~~~~~~~~s~~~~~~W~~~l~~ 95 (96)
T cd00821 43 KGSIPLSGAEVEESPDDSGRKNCFEIRTPDGRSYLLQAESEEEREEWIEALQS 95 (96)
T ss_pred cceEEcCCCEEEECCCcCCCCcEEEEecCCCcEEEEEeCCHHHHHHHHHHHhc
Confidence 355666666666543433468999999988 9999999999999999999975
No 65
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.02 E-value=4e-09 Score=94.04 Aligned_cols=99 Identities=24% Similarity=0.303 Sum_probs=74.0
Q ss_pred eeEeeeeeeccCCCCCCceeEEEEEecCceEEEEeCC-CCCCCcCCCcccccCCCCCCccccccccccccccCCCccccc
Q 006831 178 TIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKP-WSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEK 256 (629)
Q Consensus 178 ~iKqGyL~Krs~~~~k~WkRRwFvL~~~glLyYy~~~-~~~~~g~~~~~~~~~~~~~~~g~g~l~~~~~~~~~g~v~d~~ 256 (629)
.+++|-|.|.. ++.-+.|||+|-+|-++| -+.. ... .
T Consensus 4 li~eG~L~K~~---rk~~~~R~ffLFnD~LvY-~~~~~~~~-----------------------------~--------- 41 (104)
T cd01218 4 LVGEGVLTKMC---RKKPKQRQFFLFNDILVY-GNIVISKK-----------------------------K--------- 41 (104)
T ss_pred EEecCcEEEee---cCCCceEEEEEecCEEEE-EEeecCCc-----------------------------e---------
Confidence 57899999986 567888999999775554 3210 000 0
Q ss_pred cceeeEeecccceeecCCCCCCCcceEEEeeCCcEEEEEeCCHHHHHHHHHHHHHHHHHHhc
Q 006831 257 SVARHTVNLLTSTIKPDADQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVIASLLS 318 (629)
Q Consensus 257 ~~~~~~i~l~~~~vk~~~d~~drrfcF~Iit~~rty~LqAeSe~E~~~WI~aI~~aI~~~l~ 318 (629)
-.....++|..+.|....|..+-+++|.|.++.++|+++|+|++|..+||++|+.+|..++.
T Consensus 42 ~~~~~~i~L~~~~v~~~~d~~~~~n~f~I~~~~kSf~v~A~s~~eK~eWl~~i~~ai~~~l~ 103 (104)
T cd01218 42 YNKQHILPLEGVQVESIEDDGIERNGWIIKTPTKSFAVYAATETEKREWMLHINKCVTDLLE 103 (104)
T ss_pred eeEeeEEEccceEEEecCCcccccceEEEecCCeEEEEEcCCHHHHHHHHHHHHHHHHHHhc
Confidence 11235566777666554444556899999999999999999999999999999999998774
No 66
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=99.00 E-value=1.9e-09 Score=98.61 Aligned_cols=107 Identities=23% Similarity=0.399 Sum_probs=63.4
Q ss_pred Eeeeeeec------cCC---CCCCceeEEEEEecCceEEEEeCCCCCCCcCCCcccccCCCCCCccccccccccccccCC
Q 006831 180 KQGYLSKR------SSN---LRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHG 250 (629)
Q Consensus 180 KqGyL~Kr------s~~---~~k~WkRRwFvL~~~glLyYy~~~~~~~~g~~~~~~~~~~~~~~~g~g~l~~~~~~~~~g 250 (629)
|+|||..+ +++ .++.|+.-|+||+ .+.|++|++......+ . +..
T Consensus 2 keG~l~RK~~~~~~gkk~~~~~R~Wk~~y~vL~-g~~L~~~k~~~~~~~~--~------------------------~~~ 54 (119)
T PF15410_consen 2 KEGILMRKHELESGGKKASRSKRSWKQVYAVLQ-GGQLYFYKDEKSPASS--T------------------------PPD 54 (119)
T ss_dssp -EEEEEEEEEEECTTCC---S---EEEEEEEEE-TTEEEEESSHHHHCCT---------------------------BS-
T ss_pred ceEEEEEEEEEcCCCCCcCCCCCCccEEeEEEE-CCEEEEEccCcccccC--C------------------------ccc
Confidence 68999864 111 3468999999998 5778888764211000 0 000
Q ss_pred CccccccceeeEeecccceeecCCCCCCCcceEEEeeCC-cEEEEEeCCHHHHHHHHHHHHHHH
Q 006831 251 GVHDEKSVARHTVNLLTSTIKPDADQSDLRFCFRIISPT-KVYTLQAENTLDQMDWIEKINGVI 313 (629)
Q Consensus 251 ~v~d~~~~~~~~i~l~~~~vk~~~d~~drrfcF~Iit~~-rty~LqAeSe~E~~~WI~aI~~aI 313 (629)
....+...+...|+|..|...+..+...|+|+|+|.+++ ..|+|||.|++||.+||.+|+-+.
T Consensus 55 ~~~~~~~~p~~~i~L~~a~a~~a~dY~Kr~~VFrL~~~dg~e~Lfqa~~~~~m~~Wi~~IN~~A 118 (119)
T PF15410_consen 55 IQSVENAKPDSSISLHHALAEIASDYTKRKNVFRLRTADGSEYLFQASDEEEMNEWIDAINYAA 118 (119)
T ss_dssp --SS--E-----EE-TT-EEEEETTBTTCSSEEEEE-TTS-EEEEE-SSHHHHHHHHHHHHHH-
T ss_pred ccccccCcceeEEEecceEEEeCcccccCCeEEEEEeCCCCEEEEECCCHHHHHHHHHHHhhhc
Confidence 000011223355777777776667788899999999987 799999999999999999998653
No 67
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=98.95 E-value=6.2e-09 Score=88.22 Aligned_cols=91 Identities=30% Similarity=0.558 Sum_probs=61.7
Q ss_pred eeeeeeccCCC---CCCceeEEEEEecCceEEEEeCCCCCCCcCCCcccccCCCCCCccccccccccccccCCCcccccc
Q 006831 181 QGYLSKRSSNL---RADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKS 257 (629)
Q Consensus 181 qGyL~Krs~~~---~k~WkRRwFvL~~~glLyYy~~~~~~~~g~~~~~~~~~~~~~~~g~g~l~~~~~~~~~g~v~d~~~ 257 (629)
+|||.+++... .+.|++|||+|.++. |+||+.+.....
T Consensus 2 ~g~l~~~~~~~~~~~~~w~~~~~~l~~~~-l~~~~~~~~~~~-------------------------------------- 42 (99)
T cd00900 2 EGYLLKLGSDDVSKGKRWKRRWFFLFDDG-LLLYKSDDKKEI-------------------------------------- 42 (99)
T ss_pred ccEEEEeCCCccccccCceeeEEEEECCE-EEEEEcCCCCcC--------------------------------------
Confidence 69999887664 378999999999655 555554433100
Q ss_pred ceeeEeecccceeecCCCCCCCcceEEEeeC---CcEEEEEeCCHHHHHHHHHHHHH
Q 006831 258 VARHTVNLLTSTIKPDADQSDLRFCFRIISP---TKVYTLQAENTLDQMDWIEKING 311 (629)
Q Consensus 258 ~~~~~i~l~~~~vk~~~d~~drrfcF~Iit~---~rty~LqAeSe~E~~~WI~aI~~ 311 (629)
....+.+....+....+..+.+++|.|+.. .+.|.|+|+|++|+..||.+|+.
T Consensus 43 -~~~~~~l~~~~v~~~~~~~~~~~~F~i~~~~~~~~~~~~~~~~~~~~~~W~~al~~ 98 (99)
T cd00900 43 -KPGSIPLSEISVEEDPDGSDDPNCFAIVTKDRGRRVFVFQADSEEEAQEWVEALQQ 98 (99)
T ss_pred -CCCEEEccceEEEECCCCCCCCceEEEECCCCCcEEEEEEcCCHHHHHHHHHHHhc
Confidence 001122222223332222246799999988 68999999999999999999975
No 68
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=98.87 E-value=1.2e-07 Score=104.26 Aligned_cols=244 Identities=19% Similarity=0.271 Sum_probs=143.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHH-HHhhhhHHHHHHHHHHHHHHHHHHhhh----------hHhhhhchHHH
Q 006831 36 AVVIEEDLHNARTSFEQARFNLV---GALSN-VEAKKRFELLEAVGGTMDAHLRFFKQG----------YELLHQMEPFI 101 (629)
Q Consensus 36 ~~E~a~eL~~aRk~f~~asldyv---~~l~~-vq~kk~~e~le~l~~~~~a~~~ff~~g----------~e~~~~l~p~~ 101 (629)
+.-++.||..+-+.|..+. +++ +.-.. .+..+.-+.+..+++-+.+...|+++- .+.+..|.||+
T Consensus 67 ~~~iaqEll~tE~~Yv~~L-~lLd~~F~~~L~~~~~~~~~~v~~lf~nIssi~~fh~qfllp~l~~r~Iadv~qKlAPFL 145 (623)
T KOG4424|consen 67 LRHIAQELLDTERTYVKRL-HLLDQVFCRRLLEEASIPADVITGLFGNISSIHNFHGQFLLPELEKRIIADVFQKLAPFL 145 (623)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHhhhHH
Confidence 3457888888888885543 332 22222 234567788888888888888887653 35677889999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhccCC-----------------------------CCCCCCCC
Q 006831 102 NQVLAYAQQSRECSDYEQASLHQRMQDYLKQIDRESRQCLNGS-----------------------------LGSPSGDN 152 (629)
Q Consensus 102 ~~l~~~~q~~r~~~~~~~~~L~~~m~~~k~qi~~~~~~s~~~~-----------------------------~~~ps~~~ 152 (629)
+-+..|+.+......--. .+.++...+++.+.+.......+. ..+|+...
T Consensus 146 KmYseY~knydrA~~L~~-~lt~rsp~F~~vl~~Iek~~~cg~l~LqhhMiePVQRIPRYeLLLk~yl~~lp~~d~D~~d 224 (623)
T KOG4424|consen 146 KMYSEYAKNYDRALKLFQ-TLTSRSPQFRKVVEEIEKQPECGGLKLQHHMIEPVQRVPRYELLLQDYLLYLPPDDPDYKD 224 (623)
T ss_pred HHHHHHHhcchhHHHHHH-HHHhhChHHHHHHHHHhhchhcCCccchhheechhhhhhHHHHHHHHHHHhCCCCCcchHH
Confidence 999999877766554432 223332333433332211111110 01111100
Q ss_pred -------CCCCCCCchHHHHH----------HHhhhc-----cCCcceeEeeeeeeccCCCCCCceeEEEEEecCceEEE
Q 006831 153 -------VKPFPRNSNKLIEA----------AMQSAV-----KGKVQTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYY 210 (629)
Q Consensus 153 -------~~~~~~~~~k~~~~----------~~~~~~-----~~~~~~iKqGyL~Krs~~~~k~WkRRwFvL~~~glLyY 210 (629)
+...+.-++.++.. ..+.+. ++....+|+|-|+|.+.+ +++-..||++|-++-++|.
T Consensus 225 ~~ksLe~I~~aA~HsNaai~k~E~~~kLlevqe~LG~e~dIV~PsreLiKEG~l~Kis~k-~~~~qeRylfLFNd~~lyc 303 (623)
T KOG4424|consen 225 LKKSLELISTAASHSNAAITKMERLQKLLEVQEQLGNEEDIVSPSRELIKEGQLQKISAK-NGTTQERYLFLFNDILLYC 303 (623)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCcHHHHhhccceeeeecc-CCCcceeEEEEehhHHHhh
Confidence 00000001111111 111111 233457999999999887 5789999999997665553
Q ss_pred EeCCCCCCCcCCCcccccCCCCCCccccccccccccccCCCccccccceeeEeecccceeecCCCCCCCcceEEEeeCCc
Q 006831 211 YRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKSVARHTVNLLTSTIKPDADQSDLRFCFRIISPTK 290 (629)
Q Consensus 211 y~~~~~~~~g~~~~~~~~~~~~~~~g~g~l~~~~~~~~~g~v~d~~~~~~~~i~l~~~~vk~~~d~~drrfcF~Iit~~r 290 (629)
.. .... .+ ++| .....+.+..+.+..+ +...+++.|.|..+.|
T Consensus 304 ~~-r~~~-~~-------------------------~k~---------~~r~~~s~~~~~v~~~-~~~~~~~tF~~~G~~r 346 (623)
T KOG4424|consen 304 KP-RKRL-PG-------------------------SKY---------EVRARCSISHMQVQED-DNEELPHTFILTGKKR 346 (623)
T ss_pred hh-hhhc-cc-------------------------cee---------ccceeeccCcchhccc-ccccCCceEEEecccc
Confidence 32 2111 10 111 1223344444555442 4556789999999999
Q ss_pred EEEEEeCCHHHHHHHHHHHHHHHHHHhcc
Q 006831 291 VYTLQAENTLDQMDWIEKINGVIASLLSF 319 (629)
Q Consensus 291 ty~LqAeSe~E~~~WI~aI~~aI~~~l~~ 319 (629)
...|||-|+++..+||++|+.+|...-+.
T Consensus 347 ~vel~a~t~~ek~eWv~~I~~~Id~~kq~ 375 (623)
T KOG4424|consen 347 GVELQARTEQEKKEWVQAIQDAIDKHKQC 375 (623)
T ss_pred eEEeecCchhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999776553
No 69
>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=98.80 E-value=1.1e-08 Score=106.13 Aligned_cols=105 Identities=22% Similarity=0.347 Sum_probs=72.5
Q ss_pred CcceeEeeeeeeccCCCCCCceeEEEEEecCceEEEEeCC-CCCCCcCCCcccccCCCCCCccccccccccccccCCCcc
Q 006831 175 KVQTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKP-WSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVH 253 (629)
Q Consensus 175 ~~~~iKqGyL~Krs~~~~k~WkRRwFvL~~~glLyYy~~~-~~~~~g~~~~~~~~~~~~~~~g~g~l~~~~~~~~~g~v~ 253 (629)
.+.++|+|||+||+... ++|+.|||+|.++|.|.-|+.. .+.
T Consensus 12 ~~~vvkEgWlhKrGE~I-knWRpRYF~l~~DG~~~Gyr~kP~~~------------------------------------ 54 (516)
T KOG0690|consen 12 QEDVVKEGWLHKRGEHI-KNWRPRYFLLFNDGTLLGYRSKPKEV------------------------------------ 54 (516)
T ss_pred hhhhHHhhhHhhcchhh-hcccceEEEEeeCCceEeeccCCccC------------------------------------
Confidence 45688999999998886 8999999999998876666543 321
Q ss_pred ccccceeeEeecccceeecCCCCCCCcceEEEeeCCc----EEEEEeCCHHHHHHHHHHHHHHHHHHhc
Q 006831 254 DEKSVARHTVNLLTSTIKPDADQSDLRFCFRIISPTK----VYTLQAENTLDQMDWIEKINGVIASLLS 318 (629)
Q Consensus 254 d~~~~~~~~i~l~~~~vk~~~d~~drrfcF~Iit~~r----ty~LqAeSe~E~~~WI~aI~~aI~~~l~ 318 (629)
+....+...+.+..|.+-. .+..|++.|-|..-+- .-+|.++|++++++|++||+.+...+.+
T Consensus 55 ~~~p~pLNnF~v~~cq~m~--~erPrPntFiiRcLQWTTVIERTF~ves~~eRq~W~~AIq~vsn~l~q 121 (516)
T KOG0690|consen 55 QPTPEPLNNFMVRDCQTMK--TERPRPNTFIIRCLQWTTVIERTFYVESAEERQEWIEAIQAVSNRLKQ 121 (516)
T ss_pred CCCcccccchhhhhhhhhh--ccCCCCceEEEEeeeeeeeeeeeeecCCHHHHHHHHHHHHHHhhhhhh
Confidence 0001111222333343322 2346789999987662 3578999999999999999988755544
No 70
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.76 E-value=4.8e-08 Score=84.61 Aligned_cols=91 Identities=20% Similarity=0.288 Sum_probs=64.1
Q ss_pred eeEeeeeeeccCCC-CCCceeEEEEEecCceEEEEeCCCCCCCcCCCcccccCCCCCCccccccccccccccCCCccccc
Q 006831 178 TIKQGYLSKRSSNL-RADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEK 256 (629)
Q Consensus 178 ~iKqGyL~Krs~~~-~k~WkRRwFvL~~~glLyYy~~~~~~~~g~~~~~~~~~~~~~~~g~g~l~~~~~~~~~g~v~d~~ 256 (629)
+|+.|||....-.+ ++.=|+|||||++ ..||||++.+++.
T Consensus 1 virkgwl~~~n~~~m~ggsK~~WFVLt~-~~L~wykd~eeKE-------------------------------------- 41 (110)
T cd01256 1 VIRKGWLSISNVGIMKGGSKDYWFVLTS-ESLSWYKDDEEKE-------------------------------------- 41 (110)
T ss_pred CeeeeeEEeeccceecCCCcceEEEEec-ceeeeeccccccc--------------------------------------
Confidence 47889999876654 4558999999995 5577787665431
Q ss_pred cceeeEeecccceeecCCCC--CCCcceEEEeeCC--------cEEEEEeCCHHHHHHHHHHHH
Q 006831 257 SVARHTVNLLTSTIKPDADQ--SDLRFCFRIISPT--------KVYTLQAENTLDQMDWIEKIN 310 (629)
Q Consensus 257 ~~~~~~i~l~~~~vk~~~d~--~drrfcF~Iit~~--------rty~LqAeSe~E~~~WI~aI~ 310 (629)
+...|+|....++.- ++ ..++|||+|..|+ +++.|.|+|++|.+.|...+-
T Consensus 42 --~kyilpLdnLk~Rdv-e~gf~sk~~~FeLfnpd~rnvykd~k~lel~~~~~e~vdswkasfl 102 (110)
T cd01256 42 --KKYMLPLDGLKLRDI-EGGFMSRNHKFALFYPDGRNVYKDYKQLELGCETLEEVDSWKASFL 102 (110)
T ss_pred --ccceeeccccEEEee-cccccCCCcEEEEEcCcccccccchheeeecCCCHHHHHHHHHHHH
Confidence 112344444444332 22 4678999999876 578999999999999987654
No 71
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=98.68 E-value=9.5e-08 Score=91.98 Aligned_cols=93 Identities=27% Similarity=0.356 Sum_probs=87.5
Q ss_pred hhhhhhHhHHHHHHHHHHhcccCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 006831 7 TVAFNGDGNFVLQAREKFLSLRKST-RMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLR 85 (629)
Q Consensus 7 ~~~Fe~~q~kyd~~~~ky~slsk~k-~~~~~~E~a~eL~~aRk~f~~asldyv~~l~~vq~kk~~e~le~l~~~~~a~~~ 85 (629)
-++|++.+.+||.+++|+.++++++ ++..+.+.+.++..+|..|...+.+|+..|+.+...+..+++..|..|+.++..
T Consensus 100 ~k~~~~~~~~yd~~~~k~~~~~~~~~~~~~l~~~~~~~~~ar~~y~~~~~~~~~~l~~~~~~~~~~~~~~L~~~~~~q~~ 179 (194)
T cd07307 100 RKKLDKARLDYDAAREKLKKLRKKKKDSSKLAEAEEELQEAKEKYEELREELIEDLNKLEEKRKELFLSLLLSFIEAQSE 179 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3789999999999999999998877 677889999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhHhhhhchH
Q 006831 86 FFKQGYELLHQMEP 99 (629)
Q Consensus 86 ff~~g~e~~~~l~p 99 (629)
||.++++.+.++.|
T Consensus 180 ~~~~~~~~~~~l~~ 193 (194)
T cd07307 180 FFKEVLKILEQLLP 193 (194)
T ss_pred HHHhHHHHHHhhcC
Confidence 99999999887765
No 72
>KOG1090 consensus Predicted dual-specificity phosphatase [General function prediction only]
Probab=98.68 E-value=8.9e-09 Score=117.43 Aligned_cols=95 Identities=29% Similarity=0.461 Sum_probs=69.6
Q ss_pred eeEeeeeeeccCCCCCCceeEEEEEecC-ceEEEEeCCCCCCCcCCCcccccCCCCCCccccccccccccccCCCccccc
Q 006831 178 TIKQGYLSKRSSNLRADWKRRFFVLDSR-GLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEK 256 (629)
Q Consensus 178 ~iKqGyL~Krs~~~~k~WkRRwFvL~~~-glLyYy~~~~~~~~g~~~~~~~~~~~~~~~g~g~l~~~~~~~~~g~v~d~~ 256 (629)
.+-+|||+||+..+ |.||.|||||+.+ -.|+||....+.
T Consensus 1634 r~~eG~LyKrGA~l-K~Wk~RwFVLd~~khqlrYYd~~edt--------------------------------------- 1673 (1732)
T KOG1090|consen 1634 RIPEGYLYKRGAKL-KLWKPRWFVLDPDKHQLRYYDDFEDT--------------------------------------- 1673 (1732)
T ss_pred cCcccchhhcchhh-cccccceeEecCCccceeeecccccc---------------------------------------
Confidence 35599999998876 8999999999963 358888766542
Q ss_pred cceeeEeeccc--ceeecCCCCCCCcceEEEeeCCcEEEEEeCCHHHHHHHHHHHHHHH
Q 006831 257 SVARHTVNLLT--STIKPDADQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVI 313 (629)
Q Consensus 257 ~~~~~~i~l~~--~~vk~~~d~~drrfcF~Iit~~rty~LqAeSe~E~~~WI~aI~~aI 313 (629)
.+.+.|+|.. +.....+...|++--|++.|..|+|.|+|++....++|++.|+.++
T Consensus 1674 -~pkG~IdLaevesv~~~~~k~vdekgffdlktt~rvynf~a~nin~AqqWve~iqscl 1731 (1732)
T KOG1090|consen 1674 -KPKGCIDLAEVESVALIGPKTVDEKGFFDLKTTNRVYNFCAQNINLAQQWVECIQSCL 1731 (1732)
T ss_pred -cccchhhhhhhhhhcccCccccCccceeeeehhhHHHHHHhccchHHHHHHHHHHHhh
Confidence 1112222211 0001224556777789999999999999999999999999999886
No 73
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.59 E-value=3.9e-07 Score=82.33 Aligned_cols=106 Identities=15% Similarity=0.175 Sum_probs=72.0
Q ss_pred eeEeeeeeeccCCCCCCceeEEEEEecCceEEEEeCCCCC-CCcCCCcccccCCCCCCccccccccccccccCCCccccc
Q 006831 178 TIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSW-NSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEK 256 (629)
Q Consensus 178 ~iKqGyL~Krs~~~~k~WkRRwFvL~~~glLyYy~~~~~~-~~g~~~~~~~~~~~~~~~g~g~l~~~~~~~~~g~v~d~~ 256 (629)
.+++|-|.|-+.. ++.++.|+|+|-++-++|..++.... .+|. . .. .
T Consensus 4 lI~EG~L~ki~~~-~~~~q~R~~FLFd~~Li~CK~~~~~~~~~g~------------------~------------~~-~ 51 (112)
T cd01261 4 FIMEGTLTRVGPS-KKAKHERHVFLFDGLMVLCKSNHGQPRLPGA------------------S------------SA-E 51 (112)
T ss_pred ccccCcEEEEecc-cCCcceEEEEEecCeEEEEEeccCccccccc------------------c------------cc-e
Confidence 4789999988654 36799999999965555544332210 0010 0 00 0
Q ss_pred cceeeEeecccceeecCCCCCCCcceEEEeeC-CcEEEEEeCCHHHHHHHHHHHHHHHHH
Q 006831 257 SVARHTVNLLTSTIKPDADQSDLRFCFRIISP-TKVYTLQAENTLDQMDWIEKINGVIAS 315 (629)
Q Consensus 257 ~~~~~~i~l~~~~vk~~~d~~drrfcF~Iit~-~rty~LqAeSe~E~~~WI~aI~~aI~~ 315 (629)
-...+.+++....|...++..+.++.|.|++. .+.|.|+|.|++|..+||++|..+|.+
T Consensus 52 y~~k~~~~l~~~~V~d~~d~~~~knaF~I~~~~~~s~~l~Akt~eeK~~Wm~~l~~~~~~ 111 (112)
T cd01261 52 YRLKEKFFMRKVDINDKPDSSEYKNAFEIILKDGNSVIFSAKNAEEKNNWMAALISVQTK 111 (112)
T ss_pred EEEEEEEeeeeeEEEEcCCCcccCceEEEEcCCCCEEEEEECCHHHHHHHHHHHHHHhcC
Confidence 12345566666666554555556899999985 689999999999999999999988753
No 74
>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.54 E-value=1e-07 Score=83.23 Aligned_cols=97 Identities=20% Similarity=0.336 Sum_probs=62.1
Q ss_pred EeeeeeeccCCCCCCceeEEEEEecCceEEEEeCCCCCCCcCCCcccccCCCCCCccccccccccccccCCCccccccce
Q 006831 180 KQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKSVA 259 (629)
Q Consensus 180 KqGyL~Krs~~~~k~WkRRwFvL~~~glLyYy~~~~~~~~g~~~~~~~~~~~~~~~g~g~l~~~~~~~~~g~v~d~~~~~ 259 (629)
++|||+|+++...+.||||||+|.. .--|. - .|.+- .+.++.+
T Consensus 4 ~sGyL~k~Gg~~~KkWKKRwFvL~q--vsQYt-f---------amcsy-------------------------~ekks~P 46 (117)
T cd01234 4 HCGYLYAIGKNVWKKWKKRFFVLVQ--VSQYT-F---------AMCSY-------------------------REKKAEP 46 (117)
T ss_pred eeEEEEeccchhhhhhheeEEEEEc--hhHHH-H---------HHHhh-------------------------hhhcCCc
Confidence 7999999998767999999999973 21110 0 00000 0111222
Q ss_pred eeEeecccceeecCCC----------CCCCcceEEEeeCCcEEEEEeCCHHHHHHHHHHHHHHH
Q 006831 260 RHTVNLLTSTIKPDAD----------QSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVI 313 (629)
Q Consensus 260 ~~~i~l~~~~vk~~~d----------~~drrfcF~Iit~~rty~LqAeSe~E~~~WI~aI~~aI 313 (629)
.+.+.|..-+|..... -..-+|-|..+-..-+..|..+++.|+.-||+||=.+.
T Consensus 47 ~e~~qldGyTvDy~~~~~~~~~~~~~~~gg~~ff~avkegd~~~fa~~de~~r~lwvqa~yrat 110 (117)
T cd01234 47 TEFIQLDGYTVDYMPESDPDPNSELSLQGGRHFFNAVKEGDELKFATDDENERHLWVQAMYRAT 110 (117)
T ss_pred hhheeecceEEeccCCCCCCcccccccccchhhhheeccCcEEEEeccchHHHHHHHHHHHHHc
Confidence 3334444444433211 11347889999888999999999999999999997664
No 75
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.46 E-value=3.6e-07 Score=81.42 Aligned_cols=99 Identities=25% Similarity=0.365 Sum_probs=58.4
Q ss_pred EeeeeeeccCCCCCCceeEEEEEecCceEEEEeCCCCCCCcCCCcccccCCCCCCccccccccccccccCCCccccccce
Q 006831 180 KQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKSVA 259 (629)
Q Consensus 180 KqGyL~Krs~~~~k~WkRRwFvL~~~glLyYy~~~~~~~~g~~~~~~~~~~~~~~~g~g~l~~~~~~~~~g~v~d~~~~~ 259 (629)
.+|+|+.|..+ ++.||||||+|+..| |||..+.....+. +..... .+ +...+
T Consensus 2 ~~g~LylK~~g-kKsWKk~~f~LR~SG-LYy~~Kgksk~sr-dL~cl~-------------------~f-----~~~nv- 53 (114)
T cd01259 2 MEGPLYLKADG-KKSWKKYYFVLRSSG-LYYFPKEKTKNTR-DLACLN-------------------LL-----HGHNV- 53 (114)
T ss_pred ccceEEEccCC-CccceEEEEEEeCCe-eEEccCCCcCCHH-HHHHHH-------------------hc-----ccCcE-
Confidence 48999999654 589999999999888 5666554432110 000000 00 00000
Q ss_pred eeEeecccceeecCCCCCCCcceEEEeeCC-------cEEEEEeCCHHHHHHHHHHHHHH
Q 006831 260 RHTVNLLTSTIKPDADQSDLRFCFRIISPT-------KVYTLQAENTLDQMDWIEKINGV 312 (629)
Q Consensus 260 ~~~i~l~~~~vk~~~d~~drrfcF~Iit~~-------rty~LqAeSe~E~~~WI~aI~~a 312 (629)
.......-+.. ..-.|||-|..+. -.-.||||+++.+..||.+|+-+
T Consensus 54 ---Y~~~~~kKk~k---APTd~~F~~K~~~~q~~~s~~ik~lCaeDe~t~~~W~ta~Ri~ 107 (114)
T cd01259 54 ---YTGLGWRKKYK---SPTDYCFGFKAVGDQSKGSQSIKYLCAEDLPTLDRWLTAIRIA 107 (114)
T ss_pred ---EEEechhhccC---CCCCceEEEeccccCcccchhheeeccCCHHHHHHHHHHHHHH
Confidence 00011111211 2236889887654 24689999999999999999843
No 76
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=98.37 E-value=4.7e-06 Score=74.35 Aligned_cols=91 Identities=22% Similarity=0.338 Sum_probs=62.3
Q ss_pred CcceeEeeeeeeccCCCCCCceeEEEEEecCceEEEEeCCCCCCCcCCCcccccCCCCCCccccccccccccccCCCccc
Q 006831 175 KVQTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHD 254 (629)
Q Consensus 175 ~~~~iKqGyL~Krs~~~~k~WkRRwFvL~~~glLyYy~~~~~~~~g~~~~~~~~~~~~~~~g~g~l~~~~~~~~~g~v~d 254 (629)
...++++|++.|+.+-. +++|||+|++...|+|.+.....
T Consensus 10 ge~Il~~g~v~K~kgl~---~kkR~liLTd~PrL~Yvdp~~~~------------------------------------- 49 (104)
T PF14593_consen 10 GELILKQGYVKKRKGLF---AKKRQLILTDGPRLFYVDPKKMV------------------------------------- 49 (104)
T ss_dssp T--EEEEEEEEEEETTE---EEEEEEEEETTTEEEEEETTTTE-------------------------------------
T ss_pred CCeEEEEEEEEEeeceE---EEEEEEEEccCCEEEEEECCCCe-------------------------------------
Confidence 34789999999996543 99999999987789888755431
Q ss_pred cccceeeEeecccc-eeecCCCCCCCcceEEEeeCCcEEEEEeCCHHHHHHHHHHHHHHHHH
Q 006831 255 EKSVARHTVNLLTS-TIKPDADQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVIAS 315 (629)
Q Consensus 255 ~~~~~~~~i~l~~~-~vk~~~d~~drrfcF~Iit~~rty~LqAeSe~E~~~WI~aI~~aI~~ 315 (629)
..+.|.+..+ .+... + .-.|.|.||+|+|+|... +.+...|+++|+.++..
T Consensus 50 ----~KGeI~~~~~l~v~~k--~---~~~F~I~tp~RtY~l~d~-~~~A~~W~~~I~~~~~~ 101 (104)
T PF14593_consen 50 ----LKGEIPWSKELSVEVK--S---FKTFFIHTPKRTYYLEDP-EGNAQQWVEAIEEVKKQ 101 (104)
T ss_dssp ----EEEEE--STT-EEEEC--S---SSEEEEEETTEEEEEE-T-TS-HHHHHHHHHHHHHH
T ss_pred ----ECcEEecCCceEEEEc--c---CCEEEEECCCcEEEEECC-CCCHHHHHHHHHHHHHH
Confidence 2244444321 22221 1 247999999999999984 45788899999998764
No 77
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.27 E-value=2.6e-06 Score=76.35 Aligned_cols=97 Identities=19% Similarity=0.322 Sum_probs=59.7
Q ss_pred eEeeeeeeccCCCCCCceeEEEEEecCceEEEEeCCCCCCCcCCCcccccCCCCCCccccccccccccccCCCccccccc
Q 006831 179 IKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKSV 258 (629)
Q Consensus 179 iKqGyL~Krs~~~~k~WkRRwFvL~~~glLyYy~~~~~~~~g~~~~~~~~~~~~~~~g~g~l~~~~~~~~~g~v~d~~~~ 258 (629)
+|+|||.--+..- +.|||+|++|+.+++-+|..+...+. ...++
T Consensus 1 lkEGWmVHyT~~d-~~rKRhYWrLDsK~Itlf~~e~~sky------------------------------yKeIP----- 44 (117)
T cd01239 1 LKEGWMVHYTSSD-NRRKKHYWRLDSKAITLYQEESGSRY------------------------------YKEIP----- 44 (117)
T ss_pred CccceEEEEecCc-cceeeeEEEecCCeEEEEEcCCCCee------------------------------eEEee-----
Confidence 4799998776654 78999999999877655554443321 11110
Q ss_pred eeeEeecccceeecCCCCCCCcceEEEeeCCcEEEEEeC--------------------CHHHHHHHHHHHHHH
Q 006831 259 ARHTVNLLTSTIKPDADQSDLRFCFRIISPTKVYTLQAE--------------------NTLDQMDWIEKINGV 312 (629)
Q Consensus 259 ~~~~i~l~~~~vk~~~d~~drrfcF~Iit~~rty~LqAe--------------------Se~E~~~WI~aI~~a 312 (629)
..+.+.+..+.... .......+||+|+|.+.+|+.+.+ .....+.|-.||++|
T Consensus 45 LsEIl~V~~~~~~~-~~~~~~~hcFEi~T~~~vY~VG~~~~~~~~~~~~~~~~~~~sg~g~~~a~~We~aI~qA 117 (117)
T cd01239 45 LAEILSVSSNNGDS-VLAKHPPHCFEIRTTTNVYFVGGEDYHAFSGGPPKKIPPSDSGRGSDNAQSWETAIRQA 117 (117)
T ss_pred hHHheEEeccCCCc-CCCCCCCcEEEEEecCEEEEecccccccCCCcccCCCCcccccchhHHHHHHHHHHhcC
Confidence 00111121111111 122457899999999999999775 234568898888753
No 78
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.21 E-value=1.4e-05 Score=72.32 Aligned_cols=39 Identities=15% Similarity=0.397 Sum_probs=33.2
Q ss_pred CCCCCCcceEEEeeCC-------cEEEEEeCCHHHHHHHHHHHHHH
Q 006831 274 ADQSDLRFCFRIISPT-------KVYTLQAENTLDQMDWIEKINGV 312 (629)
Q Consensus 274 ~d~~drrfcF~Iit~~-------rty~LqAeSe~E~~~WI~aI~~a 312 (629)
++..|.++-|+|.+.. .+.+|-|+|+.|.+.|+.+|++.
T Consensus 73 a~~kDiP~If~I~~~~~~~~~~~~~~~~lA~s~~eK~kWV~aL~~l 118 (122)
T cd01243 73 ASKKDIPCIFRVTTSQISASSSKCSTLMLADTEEEKSKWVGALSEL 118 (122)
T ss_pred cCcccCCeEEEEEEecccCCCCccEEEEEeCCchHHHHHHHHHHHH
Confidence 5667889999999733 68899999999999999999753
No 79
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.17 E-value=1.8e-05 Score=70.56 Aligned_cols=41 Identities=24% Similarity=0.403 Sum_probs=36.1
Q ss_pred CCCCCCcceEEEeeCC--cEEEEEeCCHHHHHHHHHHHHHHHH
Q 006831 274 ADQSDLRFCFRIISPT--KVYTLQAENTLDQMDWIEKINGVIA 314 (629)
Q Consensus 274 ~d~~drrfcF~Iit~~--rty~LqAeSe~E~~~WI~aI~~aI~ 314 (629)
++..|.++-|+|.... ++.+|-|+++.|++.|+.+|..-|.
T Consensus 69 a~~kDiP~IF~I~~~~~~~~lllLA~s~~ek~kWV~~L~~~~~ 111 (112)
T cd01242 69 ADAKEIPKIFQILYANEARDLLLLAPQTDEQNKWVSRLVKKIP 111 (112)
T ss_pred cCcccCCeEEEEEeCCccceEEEEeCCchHHHHHHHHHHHhcc
Confidence 4667889999999876 8999999999999999999987663
No 80
>KOG0932 consensus Guanine nucleotide exchange factor EFA6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=4.5e-06 Score=91.51 Aligned_cols=110 Identities=25% Similarity=0.435 Sum_probs=71.3
Q ss_pred hccCCcceeEeeeeeec---------cCCCCCCceeEEEEEecCceEEEEeCCCCCCCcCCCcccccCCCCCCccccccc
Q 006831 171 AVKGKVQTIKQGYLSKR---------SSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLS 241 (629)
Q Consensus 171 ~~~~~~~~iKqGyL~Kr---------s~~~~k~WkRRwFvL~~~glLyYy~~~~~~~~g~~~~~~~~~~~~~~~g~g~l~ 241 (629)
.+...+.+.|+|+|..+ +...++.||.-|-+|+ |++.|+.+..-.+ +. .++-
T Consensus 499 ~~dpsa~~Yk~G~L~RK~had~DgkKTPrGkRgWk~fya~Lk--G~vLYlqkDey~p-~k-alse--------------- 559 (774)
T KOG0932|consen 499 PPDPSAATYKSGFLARKYHADMDGKKTPRGKRGWKMFYAVLK--GMVLYLQKDEYKP-GK-ALSE--------------- 559 (774)
T ss_pred CCCCCchhhhhhhhhhhhhccccCCcCCccchhHHHHHHHHh--hheEEeeccccCc-cc-chhh---------------
Confidence 34456678899999865 2225578999999995 5655555543321 11 0000
Q ss_pred cccccccCCCccccccceeeEeecccceeecCCCCCCCcceEEEeeCC-cEEEEEeCCHHHHHHHHHHHHHHHH
Q 006831 242 RWLSSHYHGGVHDEKSVARHTVNLLTSTIKPDADQSDLRFCFRIISPT-KVYTLQAENTLDQMDWIEKINGVIA 314 (629)
Q Consensus 242 ~~~~~~~~g~v~d~~~~~~~~i~l~~~~vk~~~d~~drrfcF~Iit~~-rty~LqAeSe~E~~~WI~aI~~aI~ 314 (629)
+ |. ...|.+-.+-..+..+...++|+|.|.|.+ |.|+|||.|.+||+.||..|+-+.+
T Consensus 560 --------~---~l----knavsvHHALAt~AtdY~KKp~Vf~lrtAdwrv~LFQaps~eEmqsWi~rIN~vAA 618 (774)
T KOG0932|consen 560 --------S---DL----KNAVSVHHALATPATDYSKKPHVFKLRTADWRVFLFQAPSQEEMQSWIERINLVAA 618 (774)
T ss_pred --------h---hh----hhhhhhhhhhcCCCcccccCCceEEEEeccceeEEEeCCCHHHHHHHHHHHHHHHH
Confidence 0 00 111222222222335677889999999998 9999999999999999999986554
No 81
>smart00721 BAR BAR domain.
Probab=98.14 E-value=1.4e-05 Score=80.91 Aligned_cols=95 Identities=23% Similarity=0.325 Sum_probs=86.5
Q ss_pred hhhhhHhHHHHHHHHHHhcccCCCCcc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 006831 8 VAFNGDGNFVLQAREKFLSLRKSTRMD---VAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHL 84 (629)
Q Consensus 8 ~~Fe~~q~kyd~~~~ky~slsk~k~~~---~~~E~a~eL~~aRk~f~~asldyv~~l~~vq~kk~~e~le~l~~~~~a~~ 84 (629)
++++...-+||.++.++.++.++++.. -+.+++++|..+|..|.....+|+..|..+.......++..+..|+.+|.
T Consensus 141 kk~~~~~lDyD~~~~kl~~~~~~~~~~~~~kl~~~e~el~~ak~~fe~~~~~l~~~l~~l~~~~~~~~~~~l~~~~~aq~ 220 (239)
T smart00721 141 KKLERKLLDYDSARHKLKKAKKSKEKKKDEKLAKAEEELRKAKQEFEESNAQLVEELPQLVASRVDFFVNCLQALIEAQL 220 (239)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHH
Confidence 689999999999999999987764322 57889999999999999999999999999999999779999999999999
Q ss_pred HHHhhhhHhhhhchHHHH
Q 006831 85 RFFKQGYELLHQMEPFIN 102 (629)
Q Consensus 85 ~ff~~g~e~~~~l~p~~~ 102 (629)
+||.++++.+.++.|++.
T Consensus 221 ~y~~~~~~~l~~l~~~l~ 238 (239)
T smart00721 221 NFHRESYKLLQQLQQQLD 238 (239)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999999999999874
No 82
>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]
Probab=97.94 E-value=1.8e-05 Score=86.44 Aligned_cols=42 Identities=33% Similarity=0.632 Sum_probs=33.6
Q ss_pred cCCcceeEeeeeeeccCCCCCCceeEEEEEecCceEEEEeCCCC
Q 006831 173 KGKVQTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWS 216 (629)
Q Consensus 173 ~~~~~~iKqGyL~Krs~~~~k~WkRRwFvL~~~glLyYy~~~~~ 216 (629)
+..+.+.++|+|+.|+.+ +|.|||.||||+..| |||..+...
T Consensus 312 ~s~~~pei~GfL~~K~dg-kKsWKk~yf~LR~SG-LYys~K~ts 353 (622)
T KOG3751|consen 312 SSSSPPEIQGFLYLKEDG-KKSWKKHYFVLRRSG-LYYSTKGTS 353 (622)
T ss_pred hcCCCccccceeeecccc-cccceeEEEEEecCc-ceEccCCCC
Confidence 345678999999999665 699999999999888 677765544
No 83
>KOG3640 consensus Actin binding protein Anillin [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.73 E-value=5.5e-05 Score=87.48 Aligned_cols=101 Identities=18% Similarity=0.278 Sum_probs=69.9
Q ss_pred ceeEeeeeeeccCC-CCCCceeEEEEEecCceEEEEeCCCCCCCcCCCcccccCCCCCCccccccccccccccCCCcccc
Q 006831 177 QTIKQGYLSKRSSN-LRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDE 255 (629)
Q Consensus 177 ~~iKqGyL~Krs~~-~~k~WkRRwFvL~~~glLyYy~~~~~~~~g~~~~~~~~~~~~~~~g~g~l~~~~~~~~~g~v~d~ 255 (629)
.+.-.|||++-... ..+.|.||||+|. +|.+.|.+.+.+..
T Consensus 989 dVEYrGFLtmfed~sgfGaWhRyWc~L~-gg~I~fWk~PdDEk------------------------------------- 1030 (1116)
T KOG3640|consen 989 DVEYRGFLTMFEDGSGFGAWHRYWCALH-GGEIKFWKYPDDEK------------------------------------- 1030 (1116)
T ss_pred ceeeeeeeeeeeccCCCchhhhhhHHhc-CCeeeeecCcchhc-------------------------------------
Confidence 45677999874322 3478999999997 67777776665421
Q ss_pred ccceeeEeecccceeecCC----CCCCCcceEEEeeC-------------Cc-EEEEEeCCHHHHHHHHHHHHHHHHH
Q 006831 256 KSVARHTVNLLTSTIKPDA----DQSDLRFCFRIISP-------------TK-VYTLQAENTLDQMDWIEKINGVIAS 315 (629)
Q Consensus 256 ~~~~~~~i~l~~~~vk~~~----d~~drrfcF~Iit~-------------~r-ty~LqAeSe~E~~~WI~aI~~aI~~ 315 (629)
..++.+.|+|..|+-..-. +-..|++.|.|.+- .| ...|.|++.+|++.|+.+|+.+...
T Consensus 1031 rK~Pig~IDLt~CTsq~ie~a~rdicar~ntFhie~~rPl~~Dqep~~ie~r~Rv~LaADTkeel~~Wls~iN~tL~~ 1108 (1116)
T KOG3640|consen 1031 RKVPIGQIDLTKCTSQSIEEARRDICARPNTFHIEVWRPLEDDQEPLLIEKRLRVMLAADTKEELQSWLSAINDTLKQ 1108 (1116)
T ss_pred ccCcceeeehhhhhccccccchhhhccCCceeEEEeecccccccCcchhhhcceeeeecccHHHHHHHHHHHHHHHHH
Confidence 1234466888877653321 12356788999831 13 5789999999999999999988753
No 84
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=97.70 E-value=6.7e-05 Score=84.67 Aligned_cols=94 Identities=22% Similarity=0.456 Sum_probs=64.2
Q ss_pred eeEeeeeeeccCC----CCCCceeEEEEEecCceEEEEeCCCCCCCcCCCcccccCCCCCCccccccccccccccCCCcc
Q 006831 178 TIKQGYLSKRSSN----LRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVH 253 (629)
Q Consensus 178 ~iKqGyL~Krs~~----~~k~WkRRwFvL~~~glLyYy~~~~~~~~g~~~~~~~~~~~~~~~g~g~l~~~~~~~~~g~v~ 253 (629)
+.|+|.|.|+..+ .++.+|+|||-|+. .-|.|.++++..+.
T Consensus 565 v~k~glm~kr~~gr~~~~~~~FKKryf~LT~-~~Ls~~Ksp~~q~~---------------------------------- 609 (800)
T KOG2059|consen 565 VLKEGLMIKRAQGRGRFGKKNFKKRYFRLTT-EELSYAKSPGKQPI---------------------------------- 609 (800)
T ss_pred eecccceEeccccccchhhhhhhheEEEecc-ceeEEecCCccCcc----------------------------------
Confidence 4445555555333 23578899999984 55888888766421
Q ss_pred ccccceeeEeec--ccceeecCCCCCCCcceEEEeeCCcEEEEEeCCHHHHHHHHHHHHHHH
Q 006831 254 DEKSVARHTVNL--LTSTIKPDADQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVI 313 (629)
Q Consensus 254 d~~~~~~~~i~l--~~~~vk~~~d~~drrfcF~Iit~~rty~LqAeSe~E~~~WI~aI~~aI 313 (629)
.+|.+ +.+.-+.+...-+.+++|+|+..+|+.+|||.+-.|..+|+.+|..+.
T Consensus 610 -------~~Ipl~nI~avEklee~sF~~knv~qVV~~drtly~Q~~n~vEandWldaL~kvs 664 (800)
T KOG2059|consen 610 -------YTIPLSNIRAVEKLEEKSFKMKNVFQVVHTDRTLYVQAKNCVEANDWLDALRKVS 664 (800)
T ss_pred -------cceeHHHHHHHHHhhhhccCCCceEEEEecCcceeEecCCchHHHHHHHHHHHHh
Confidence 11222 112223322334668999999999999999999999999999998765
No 85
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=97.69 E-value=8.9e-05 Score=83.19 Aligned_cols=100 Identities=22% Similarity=0.262 Sum_probs=62.4
Q ss_pred ceeEeeeeeeccCCCCCCceeEEEEEecCceEEEEeCCCCCCCcCCCcccccCCCCCCccccccccccccccCCCccccc
Q 006831 177 QTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEK 256 (629)
Q Consensus 177 ~~iKqGyL~Krs~~~~k~WkRRwFvL~~~glLyYy~~~~~~~~g~~~~~~~~~~~~~~~g~g~l~~~~~~~~~g~v~d~~ 256 (629)
.+.+.|||+|.+... .|++|||.+.++++...+...... .+... .
T Consensus 376 Dv~~~G~l~k~~~~~--~wk~ry~~l~~~~l~~~~~~~~~~-~~~~~--------------------------------~ 420 (478)
T PTZ00267 376 DVTHGGYLYKYSSDM--RWKKRYFYIGNGQLRISLSENPEN-DGVAP--------------------------------K 420 (478)
T ss_pred CcccceEEeccCCCc--chhhheEEecCCceEEEecccccc-CCCCC--------------------------------c
Confidence 456799999997764 499999999877766555433221 00000 0
Q ss_pred cceeeEeecccceeecCCCCCCCcceEEEeeC-CcEEEEEeCCHHHHHHHHHHHHHHH
Q 006831 257 SVARHTVNLLTSTIKPDADQSDLRFCFRIISP-TKVYTLQAENTLDQMDWIEKINGVI 313 (629)
Q Consensus 257 ~~~~~~i~l~~~~vk~~~d~~drrfcF~Iit~-~rty~LqAeSe~E~~~WI~aI~~aI 313 (629)
......+. ..+.+.. .....+++||.|.+. .+.+.|+|+|++++++||.+|+.++
T Consensus 421 ~~~l~~~~-~v~pv~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~W~~~~~~~~ 476 (478)
T PTZ00267 421 SVNLETVN-DVFPVPE-VYSQKHPNQLVLWFNNGQKIIAYAKTAEDRDQWISKFQRAC 476 (478)
T ss_pred cccHHHhc-ccccccH-HhcCCCCceEEEEecCCcEEEEecCChHHHHHHHHHHHHHh
Confidence 00000000 0122211 112345899999774 4789999999999999999999875
No 86
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=97.68 E-value=0.00044 Score=68.68 Aligned_cols=91 Identities=26% Similarity=0.387 Sum_probs=81.0
Q ss_pred hhhhhHhHHHHHHHHHHhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHH
Q 006831 8 VAFNGDGNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELL-EAVGGTMDAHLRF 86 (629)
Q Consensus 8 ~~Fe~~q~kyd~~~~ky~slsk~k~~~~~~E~a~eL~~aRk~f~~asldyv~~l~~vq~kk~~e~l-e~l~~~~~a~~~f 86 (629)
+++++..-+||.+++++.++.+++..... +.++..++..|.....+|...|..+..... +++ ..+..|+.++..|
T Consensus 138 kkr~~~~ldyd~~~~k~~k~~~~~~~~~~---~~~l~~a~~~f~~~~~~l~~~l~~l~~~~~-~~l~~~l~~~i~~q~~~ 213 (229)
T PF03114_consen 138 KKREKKRLDYDSARSKLEKLRKKKSKSSK---EEKLEEAKEEFEALNEELKEELPKLFAKRQ-DILEPCLQSFIEAQLQY 213 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHTTSSBTHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 57888899999999999999977765433 889999999999999999999999998776 666 8999999999999
Q ss_pred HhhhhHhhhhchHHHH
Q 006831 87 FKQGYELLHQMEPFIN 102 (629)
Q Consensus 87 f~~g~e~~~~l~p~~~ 102 (629)
|+++++.++++.|.+.
T Consensus 214 ~~~~~~~l~~l~~~l~ 229 (229)
T PF03114_consen 214 FQQLYQILEELQPQLA 229 (229)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhC
Confidence 9999999999998763
No 87
>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.60 E-value=0.00078 Score=59.60 Aligned_cols=40 Identities=13% Similarity=0.298 Sum_probs=36.1
Q ss_pred CCCCCCcceEEEeeCCcEEEEEeCCHHHHHHHHHHHHHHH
Q 006831 274 ADQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVI 313 (629)
Q Consensus 274 ~d~~drrfcF~Iit~~rty~LqAeSe~E~~~WI~aI~~aI 313 (629)
+|...-+++|.|.++.+++.+||+|+++..+||..|+.++
T Consensus 59 ~D~~~~kNafki~t~~~s~i~qaes~~~K~eWl~~le~a~ 98 (100)
T cd01226 59 KDRENAKKVLKLLIFPESRIYQCESARIKTEWFEELEQAK 98 (100)
T ss_pred CCCcCcCceEEEEeCCccEEEEeCCHHHHHHHHHHHHHHh
Confidence 3455668999999999999999999999999999999886
No 88
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.58 E-value=0.001 Score=58.80 Aligned_cols=34 Identities=24% Similarity=0.543 Sum_probs=31.2
Q ss_pred cceEEEeeCC---cEEEEEeCCHHHHHHHHHHHHHHH
Q 006831 280 RFCFRIISPT---KVYTLQAENTLDQMDWIEKINGVI 313 (629)
Q Consensus 280 rfcF~Iit~~---rty~LqAeSe~E~~~WI~aI~~aI 313 (629)
+++|.|++.+ +.|.|||.|.++.+.||++|+.+|
T Consensus 59 ~~~F~v~~~~~p~~~~~l~A~s~e~K~~W~~~i~~~i 95 (97)
T cd01222 59 PLCFRVIPFDDPKGALQLTARNREEKRIWTQQLKRAM 95 (97)
T ss_pred CcEEEEEecCCCceEEEEEecCHHHHHHHHHHHHHHh
Confidence 7999998765 799999999999999999999887
No 89
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.55 E-value=0.00041 Score=59.84 Aligned_cols=87 Identities=20% Similarity=0.300 Sum_probs=59.2
Q ss_pred eeEeeeeeeccCCCCCCceeEEEEEecCceEEEEeCCCCCCCcCCCcccccCCCCCCccccccccccccccCCCcccccc
Q 006831 178 TIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKS 257 (629)
Q Consensus 178 ~iKqGyL~Krs~~~~k~WkRRwFvL~~~glLyYy~~~~~~~~g~~~~~~~~~~~~~~~g~g~l~~~~~~~~~g~v~d~~~ 257 (629)
++++|.+.||.+ + .+++|-++|++...|+|.......
T Consensus 1 Il~~g~v~Kr~g-l--f~kkR~LiLTd~PrL~yvdp~~~~---------------------------------------- 37 (89)
T cd01262 1 ILKIGAVKKRKG-L--FAKKRQLILTNGPRLIYVDPVKKV---------------------------------------- 37 (89)
T ss_pred Cceeeeeeehhc-c--ccceeeEEEecCceEEEEcCCcCe----------------------------------------
Confidence 357899999966 3 589999999988888887654332
Q ss_pred ceeeEeecccceeecCCCCCCCcceEEEeeCCcEEEEEeCCHHHHHHHHHHHHHH
Q 006831 258 VARHTVNLLTSTIKPDADQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGV 312 (629)
Q Consensus 258 ~~~~~i~l~~~~vk~~~d~~drrfcF~Iit~~rty~LqAeSe~E~~~WI~aI~~a 312 (629)
..+.|........+.. .....|.|.||+|+|+|. +.+.....|+.+|+.+
T Consensus 38 -~KgeIp~s~~~l~v~~---~~~~~F~I~Tp~rty~le-D~~~~a~~W~~~I~~~ 87 (89)
T cd01262 38 -VKGEIPWSDVELRVEV---KNSSHFFVHTPNKVYSFE-DPKGRASQWKKAIEDL 87 (89)
T ss_pred -EEeEecccccceEEEE---ecCccEEEECCCceEEEE-CCCCCHHHHHHHHHHH
Confidence 1222322221111111 113579999999999995 5568899999999865
No 90
>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain. Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.51 E-value=0.00038 Score=62.51 Aligned_cols=34 Identities=24% Similarity=0.312 Sum_probs=30.5
Q ss_pred CCcceEEEeeCC--cEEEEEeCCHHHHHHHHHHHHH
Q 006831 278 DLRFCFRIISPT--KVYTLQAENTLDQMDWIEKING 311 (629)
Q Consensus 278 drrfcF~Iit~~--rty~LqAeSe~E~~~WI~aI~~ 311 (629)
.+.+||-|.+.. .+++|..|+..|+..|..+|+.
T Consensus 72 ~~~~~F~irtg~~vesh~fsVEt~~dL~~W~raiv~ 107 (108)
T cd01258 72 QRDNCFLIRTGTQVENHYLRVETHRDLASWERALVR 107 (108)
T ss_pred CCceEEEEEcCCceeeEEEEecCHHHHHHHHHHHhc
Confidence 567999999988 5899999999999999999874
No 91
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=97.36 E-value=0.002 Score=72.87 Aligned_cols=37 Identities=24% Similarity=0.448 Sum_probs=32.7
Q ss_pred CCCcceEEEeeCC-cEEEEEeCCHHHHHHHHHHHHHHH
Q 006831 277 SDLRFCFRIISPT-KVYTLQAENTLDQMDWIEKINGVI 313 (629)
Q Consensus 277 ~drrfcF~Iit~~-rty~LqAeSe~E~~~WI~aI~~aI 313 (629)
.+.+|.|-|...+ |.+.|||.+++|++.||.+||.++
T Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (496)
T PTZ00283 452 SNAAHVFAVAFKTGRRLLFQARSDPERDAWMQKIQSVL 489 (496)
T ss_pred CCCCcEEEEEecCCcEEEEecCCchhHHHHHHHHHHhc
Confidence 3468999998655 999999999999999999999876
No 92
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.34 E-value=0.0033 Score=56.51 Aligned_cols=95 Identities=13% Similarity=0.172 Sum_probs=62.8
Q ss_pred eEeeeeeeccCCCCCCceeEEEEEecCceEEEEeCCCCCCCcCCCcccccCCCCCCccccccccccccccCCCccccccc
Q 006831 179 IKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKSV 258 (629)
Q Consensus 179 iKqGyL~Krs~~~~k~WkRRwFvL~~~glLyYy~~~~~~~~g~~~~~~~~~~~~~~~g~g~l~~~~~~~~~g~v~d~~~~ 258 (629)
+.+|=|.+.+.. .+.=+.|+|+|-++.++|..++.-.. + .-.
T Consensus 3 i~~Gel~~~s~~-~g~~q~R~~FLFD~~LI~CKkd~~r~------------------------------------~-~~~ 44 (109)
T cd01224 3 FLQGEATRQKQN-KGWNSSRVLFLFDHQMVLCKKDLIRR------------------------------------D-HLY 44 (109)
T ss_pred eEeeeEEEEecc-cCCcccEEEEEecceEEEEecccccC------------------------------------C-cEE
Confidence 578888887633 11224689999866555544332110 0 012
Q ss_pred eeeEeecccceeecCCCCCC------CcceEEEeeCC--cEEEEEeCCHHHHHHHHHHHHH
Q 006831 259 ARHTVNLLTSTIKPDADQSD------LRFCFRIISPT--KVYTLQAENTLDQMDWIEKING 311 (629)
Q Consensus 259 ~~~~i~l~~~~vk~~~d~~d------rrfcF~Iit~~--rty~LqAeSe~E~~~WI~aI~~ 311 (629)
..+.|.+..+.|...+|..+ -++.|.|+..+ ..|.|+|.|+++...||+||..
T Consensus 45 yKgri~l~~~~I~d~~Dg~~~~~~~~~knafkl~~~~~~~~~~f~~Kt~e~K~~Wm~a~~~ 105 (109)
T cd01224 45 YKGRIDLDRCEVVNIRDGKMFSSGHTIKNSLKIYSESTDEWYLFSFKSAERKHRWLSAFAL 105 (109)
T ss_pred EEEEEEcccEEEEECCCCccccCCceeEEEEEEEEcCCCeEEEEEECCHHHHHHHHHHHHH
Confidence 34667777777765544432 27899999877 6799999999999999999863
No 93
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=97.16 E-value=0.0055 Score=56.41 Aligned_cols=36 Identities=14% Similarity=0.278 Sum_probs=32.9
Q ss_pred CcceEEEeeCCcEEEEEeCCHHHHHHHHHHHHHHHH
Q 006831 279 LRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVIA 314 (629)
Q Consensus 279 rrfcF~Iit~~rty~LqAeSe~E~~~WI~aI~~aI~ 314 (629)
..++|.|.+++|++-|.|++.++.+-|+.+|+-.++
T Consensus 87 ~~~si~i~t~~R~L~l~a~s~~~~~~W~~aL~~L~~ 122 (123)
T PF12814_consen 87 HNKSIIIVTPDRSLDLTAPSRERHEIWFNALRYLLQ 122 (123)
T ss_pred cceEEEEEcCCeEEEEEeCCHHHHHHHHHHHHHHhh
Confidence 568999999999999999999999999999987654
No 94
>KOG0248 consensus Cytoplasmic protein Max-1, contains PH, MyTH4 and FERM domains [Cytoskeleton]
Probab=97.15 E-value=0.00025 Score=79.67 Aligned_cols=98 Identities=23% Similarity=0.443 Sum_probs=69.4
Q ss_pred cceeEeeeeeeccCCCCCCceeEEEEEecCceEEEEeCCCCCCCcCCCcccccCCCCCCccccccccccccccCCCcccc
Q 006831 176 VQTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDE 255 (629)
Q Consensus 176 ~~~iKqGyL~Krs~~~~k~WkRRwFvL~~~glLyYy~~~~~~~~g~~~~~~~~~~~~~~~g~g~l~~~~~~~~~g~v~d~ 255 (629)
....|.||+.+.+... +.|+||||+++ +|...||+.+... ++
T Consensus 247 e~~ekSgy~~~~~s~~-k~lkrr~~v~k-~gqi~~y~~~~~~------------------------------------~~ 288 (936)
T KOG0248|consen 247 ETMEKSGYWTQLTSRI-KSLKRRYVVFK-NGQISFYRKHNNR------------------------------------DE 288 (936)
T ss_pred chhhcccchhcchHHH-HHHHhHheeec-cceEEEEEcCCCc------------------------------------cc
Confidence 4567899999987665 89999999998 5666667666442 11
Q ss_pred ccceeeEeecccceeecCCCCCCCcceEEEeeCCcEEEEEeCCHHHHHHHHHHHHHHHHHH
Q 006831 256 KSVARHTVNLLTSTIKPDADQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVIASL 316 (629)
Q Consensus 256 ~~~~~~~i~l~~~~vk~~~d~~drrfcF~Iit~~rty~LqAeSe~E~~~WI~aI~~aI~~~ 316 (629)
.+...+++....+.. ...-.+.|.+++...+|+|.++|+--..+|+..|+..|.-.
T Consensus 289 --~p~s~~d~~s~~~~~---~~~~s~~fqli~~t~~~~~~~~s~~lt~dw~~iL~~~iKv~ 344 (936)
T KOG0248|consen 289 --EPASKIDIRSVTKLE---QQGAAYAFQLITSTDKMNFMTESERTTHDWVTILSAAIKAT 344 (936)
T ss_pred --cccCcccccccceee---ccchhHHhhhhhhceeEEEeccChhhhhhhHHHHHHHHHHH
Confidence 111222222212111 22345789999999999999999999999999999998643
No 95
>PLN02866 phospholipase D
Probab=97.14 E-value=0.0028 Score=75.72 Aligned_cols=38 Identities=24% Similarity=0.491 Sum_probs=34.4
Q ss_pred CCCcceEEEeeCCcEEEEEeCCHHHHHHHHHHHHHHHH
Q 006831 277 SDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVIA 314 (629)
Q Consensus 277 ~drrfcF~Iit~~rty~LqAeSe~E~~~WI~aI~~aI~ 314 (629)
...+|.|.|.+.+|++.|.|.|...+.+|+.+|+.+..
T Consensus 271 ~~~~~~~~i~~~~r~l~l~~~s~~~~~~w~~ai~~~~~ 308 (1068)
T PLN02866 271 NPLRFGFKVTCGNRSIRLRTKSSAKVKDWVAAINDAGL 308 (1068)
T ss_pred CCCcceEEEecCceEEEEEECCHHHHHHHHHHHHHHHh
Confidence 35589999999999999999999999999999998764
No 96
>cd07608 BAR_ArfGAP_fungi The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized fungal Arf GAP proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of uncharacterized fungal proteins containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and an Arf GTPase Activating Protein (GAP) domain. These proteins may play roles in Arf-mediated functions involving membrane dynamics. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.06 E-value=0.0025 Score=62.76 Aligned_cols=81 Identities=17% Similarity=0.259 Sum_probs=65.1
Q ss_pred hhhhhhHhHHHHHHHHHHhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHH
Q 006831 7 TVAFNGDGNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKR-FELLEAVGGTMDAHLR 85 (629)
Q Consensus 7 ~~~Fe~~q~kyd~~~~ky~slsk~k~~~~~~E~a~eL~~aRk~f~~asldyv~~l~~vq~kk~-~e~le~l~~~~~a~~~ 85 (629)
-+.||..++.|++.+.||++.+.+++ +.+--+..-|+.|+..+|||...|+.+-...+ =++|+.+..|.+.+..
T Consensus 102 kK~FEeeSKdYYs~l~kYLsn~~~~k-----~~DSK~l~KRk~FEL~RFDY~~~mqdl~ggr~~qell~~L~kf~~~q~~ 176 (192)
T cd07608 102 KKDFEEESKDYYSWLSKYLSNESDKK-----RPDSKLLAKRKTFELSRFDYLNYLQDLHGGRKEQELLSILTKFINQQYD 176 (192)
T ss_pred hhhHHHHhHHHHHHHHHHhccccccc-----CcchHHHHHHHHHHHHHhhHHHHHHHHhCCHHHHHHHHHHHHHhhhhHH
Confidence 36899999999999999999885222 23456788999999999999999999975444 4788899999998877
Q ss_pred HHhhhhH
Q 006831 86 FFKQGYE 92 (629)
Q Consensus 86 ff~~g~e 92 (629)
.+..-..
T Consensus 177 ~~~~~~~ 183 (192)
T cd07608 177 SIALTSN 183 (192)
T ss_pred HHHhHhh
Confidence 7765433
No 97
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=96.97 E-value=0.0037 Score=72.00 Aligned_cols=100 Identities=24% Similarity=0.390 Sum_probs=63.9
Q ss_pred eeEeeeeeeccCC--CCCCceeEEEEEecCceEEEEeCCCCCCCcCCCcccccCCCCCCccccccccccccccCCCcccc
Q 006831 178 TIKQGYLSKRSSN--LRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDE 255 (629)
Q Consensus 178 ~iKqGyL~Krs~~--~~k~WkRRwFvL~~~glLyYy~~~~~~~~g~~~~~~~~~~~~~~~g~g~l~~~~~~~~~g~v~d~ 255 (629)
+..+|||+.-+.+ .+.--++|||||.++.+-||.++|... +.
T Consensus 4 ~~~eGW~y~~g~~kig~~~~~~Ry~vl~~~~~~~yK~~P~~~------~~------------------------------ 47 (719)
T PLN00188 4 VVYEGWMVRYGRRKIGRSYIHMRYFVLESRLLAYYKKKPQDN------QV------------------------------ 47 (719)
T ss_pred ceEeeEEEEEcccccccccceeEEEEEecchhhhcccCCccc------cc------------------------------
Confidence 4689999987655 345678999999976655555555331 00
Q ss_pred ccceeeEeecccceeecCCCCCCC-------cceEEEeeC---CcEEEEEeCCHHHHHHHHHHHHHHHHHHhcc
Q 006831 256 KSVARHTVNLLTSTIKPDADQSDL-------RFCFRIISP---TKVYTLQAENTLDQMDWIEKINGVIASLLSF 319 (629)
Q Consensus 256 ~~~~~~~i~l~~~~vk~~~d~~dr-------rfcF~Iit~---~rty~LqAeSe~E~~~WI~aI~~aI~~~l~~ 319 (629)
+...+.|+ ...++. +..| =|.|.|... ++...|-|-|.+|...||+||+.+|...+..
T Consensus 48 -pirs~~id---~~~rVe--d~Gr~~~~g~~~yvl~~Yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~q~~~~ 115 (719)
T PLN00188 48 -PIKTLLID---GNCRVE--DRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIESVIDQHQDS 115 (719)
T ss_pred -cceeeccC---CCceEe--ecCceEEcCceEEEEEEecCCCccccEEEecCCHHHHHHHHHHHHHHHhhhccc
Confidence 11111111 122221 1112 267777754 3789999999999999999999999876443
No 98
>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or
Probab=96.96 E-value=0.0008 Score=59.81 Aligned_cols=97 Identities=16% Similarity=0.307 Sum_probs=62.5
Q ss_pred eeEeeeeeeccCCCCCCceeEEEEEecCceEEEEeCCCCCCCcCCCcccccCCCCCCccccccccccccccCCCcccccc
Q 006831 178 TIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKS 257 (629)
Q Consensus 178 ~iKqGyL~Krs~~~~k~WkRRwFvL~~~glLyYy~~~~~~~~g~~~~~~~~~~~~~~~g~g~l~~~~~~~~~g~v~d~~~ 257 (629)
++.+||+.|-++-+-..|++|||-|..|.+=+|-.+.... +.
T Consensus 3 cIvhGyi~KLGGPFls~WQ~Ry~~LfPNRLE~~~~~~~~~-~e------------------------------------- 44 (116)
T cd01240 3 CIVHGYIKKLGGPFLSQWQTRYFKLYPNRLELYGESEANK-PE------------------------------------- 44 (116)
T ss_pred eEEeeehhhhCCHHHHHHHHHHheeCcceeeecccccccC-Cc-------------------------------------
Confidence 5789999999888778999999999987764432211110 00
Q ss_pred ceeeEeecccceeecCCCCCCCcceEEEeeCC-cEEEEEeCCHHHHHHHHHHHHHHHHH
Q 006831 258 VARHTVNLLTSTIKPDADQSDLRFCFRIISPT-KVYTLQAENTLDQMDWIEKINGVIAS 315 (629)
Q Consensus 258 ~~~~~i~l~~~~vk~~~d~~drrfcF~Iit~~-rty~LqAeSe~E~~~WI~aI~~aI~~ 315 (629)
..++.-.. .|.++-....-..|..|...+ +.++|+++++-+..+|..-|+++-..
T Consensus 45 --Li~M~~i~-~V~~e~~~iK~~~CI~ik~k~~~k~vlt~~d~i~l~qW~~elr~a~r~ 100 (116)
T cd01240 45 --LITMDQIE-DVSVEFQQIKEENCILLKIRDEKKIVLTNSDEIELKQWKKELRDAHRE 100 (116)
T ss_pred --EEEeehhh-hcchhheeeccCceEEEEEcCCceEEEecCCcHHHHHHHHHHHHHHHH
Confidence 00000000 011110111235799988765 78999999999999999999887643
No 99
>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain. Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.87 E-value=0.0093 Score=55.01 Aligned_cols=33 Identities=15% Similarity=0.274 Sum_probs=27.6
Q ss_pred CCcceEEEe------eCCcEEEEEeCCHHHHHHHHHHHH
Q 006831 278 DLRFCFRII------SPTKVYTLQAENTLDQMDWIEKIN 310 (629)
Q Consensus 278 drrfcF~Ii------t~~rty~LqAeSe~E~~~WI~aI~ 310 (629)
..++.|.|+ ...+.+.|+|+|+.|+..||+||.
T Consensus 81 ~~~~~F~ltLl~N~~gk~~el~L~a~S~sdr~rWi~Al~ 119 (125)
T cd01221 81 GRPNLFLLTLLRNADDKQAELLLSADSQSDRERWLSALA 119 (125)
T ss_pred CCCceEEEEeeccCCCCEEEEEEECCCHHHHHHHHHhcC
Confidence 457899997 333689999999999999999884
No 100
>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms]
Probab=96.76 E-value=0.0014 Score=71.36 Aligned_cols=93 Identities=23% Similarity=0.401 Sum_probs=68.1
Q ss_pred eeEeeeeeeccCCCCCCceeEEEEEecCceEEEEeCCCCCCCcCCCcccccCCCCCCccccccccccccccCCCcccccc
Q 006831 178 TIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKS 257 (629)
Q Consensus 178 ~iKqGyL~Krs~~~~k~WkRRwFvL~~~glLyYy~~~~~~~~g~~~~~~~~~~~~~~~g~g~l~~~~~~~~~g~v~d~~~ 257 (629)
+...|+|.|...-. ..|.-|||+|+.++ |.||++......|
T Consensus 24 ~e~~G~lskwtnyi-~gwqdRyv~lk~g~-Lsyykse~E~~hG------------------------------------- 64 (611)
T KOG1739|consen 24 VERCGVLSKWTNYI-HGWQDRYVVLKNGA-LSYYKSEDETEHG------------------------------------- 64 (611)
T ss_pred hhhcceeeeeeccc-ccccceEEEEcccc-hhhhhhhhhhhcc-------------------------------------
Confidence 45678998885444 67999999999655 5666665443222
Q ss_pred ceeeEeecccceeecCCCCCCCcceEEEeeCCcEEEEEeCCHHHHHHHHHHHHHHH
Q 006831 258 VARHTVNLLTSTIKPDADQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVI 313 (629)
Q Consensus 258 ~~~~~i~l~~~~vk~~~d~~drrfcF~Iit~~rty~LqAeSe~E~~~WI~aI~~aI 313 (629)
.++.|.+..+.+.....+ -..|.|.+....++|.|.+...++.|+++|+---
T Consensus 65 -cRgsi~l~ka~i~ahEfD---e~rfdIsvn~nv~~lra~~~~hr~~w~d~L~wmk 116 (611)
T KOG1739|consen 65 -CRGSICLSKAVITAHEFD---ECRFDISVNDNVWYLRAQDPDHRQQWIDALEWMK 116 (611)
T ss_pred -cceeeEeccCCcccccch---hheeeeEeccceeeehhcCcHHHHHHHHHHHHHh
Confidence 245666777777765333 3569999999999999999999999999997543
No 101
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=96.76 E-value=0.00082 Score=74.37 Aligned_cols=38 Identities=26% Similarity=0.517 Sum_probs=34.1
Q ss_pred CcceEEEeeCCcEEEEEeCCHHHHHHHHHHHHHHHHHH
Q 006831 279 LRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVIASL 316 (629)
Q Consensus 279 rrfcF~Iit~~rty~LqAeSe~E~~~WI~aI~~aI~~~ 316 (629)
.+-.|+|.|.+.||.|.|.+++..++|++.|+=+++-+
T Consensus 802 lpKAFEIFTAD~T~ILKaKDeKNAEEWlqCL~IavAHa 839 (851)
T KOG3723|consen 802 LPKAFEIFTADKTYILKAKDEKNAEEWLQCLNIAVAHA 839 (851)
T ss_pred cchhhheeecCceEEeecccccCHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999777644
No 102
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=96.67 E-value=0.021 Score=58.75 Aligned_cols=99 Identities=15% Similarity=0.179 Sum_probs=81.1
Q ss_pred hhhhhhHhHHHHHHHHHHhcccCCCC----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 006831 7 TVAFNGDGNFVLQAREKFLSLRKSTR----MDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDA 82 (629)
Q Consensus 7 ~~~Fe~~q~kyd~~~~ky~slsk~k~----~~~~~E~a~eL~~aRk~f~~asldyv~~l~~vq~kk~~e~le~l~~~~~a 82 (629)
-++.+..--.||.++.|+.+-.|..- +.-+..+.++|..+...|.++.=+++..|.++-.+- .+++..+..|+.+
T Consensus 127 RKkLe~~RLd~D~~k~r~~ka~k~~~~~~~~~K~~~l~eE~e~ae~k~e~~~e~~~~~M~~~l~~E-~e~~~~l~~lv~a 205 (244)
T cd07595 127 KKRLSKLVLDMDSARSRYNAAHKSSGGQGAAAKVDALKDEYEEAELKLEQCRDALATDMYEFLAKE-AEIASYLIDLIEA 205 (244)
T ss_pred HHHHhhhhHHHHHHHHHHHhccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-HHHHHHHHHHHHH
Confidence 35677788899999999976543211 222345688899999999999999999999987774 4999999999999
Q ss_pred HHHHHhhhhHhhhhchHHHHHHHH
Q 006831 83 HLRFFKQGYELLHQMEPFINQVLA 106 (629)
Q Consensus 83 ~~~ff~~g~e~~~~l~p~~~~l~~ 106 (629)
|..|+.+.++++.++-|.|++...
T Consensus 206 Ql~YH~~a~e~L~~l~~~l~~~~~ 229 (244)
T cd07595 206 QREYHRTALSVLEAVLPELQEQIE 229 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988888877665
No 103
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.31 E-value=0.064 Score=48.82 Aligned_cols=35 Identities=20% Similarity=0.479 Sum_probs=28.0
Q ss_pred cceEEEe--eCC---cEEEEEeCCHHHHHHHHHHHHHHHH
Q 006831 280 RFCFRII--SPT---KVYTLQAENTLDQMDWIEKINGVIA 314 (629)
Q Consensus 280 rfcF~Ii--t~~---rty~LqAeSe~E~~~WI~aI~~aI~ 314 (629)
+++|+|. .+. .+|+|||.|.++.+.|+..|+.+++
T Consensus 74 ~~kF~i~~~~~~~~~~~~ilqA~s~e~K~~W~~~I~~il~ 113 (114)
T cd01232 74 PCRFALWSGDPPISDNRIILKANSQETKQEWVKKIREILQ 113 (114)
T ss_pred CceEEEEeCCCCCCceEEEEECCCHHHHHHHHHHHHHHhh
Confidence 4556665 443 6999999999999999999987753
No 104
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.03 E-value=0.036 Score=50.37 Aligned_cols=38 Identities=8% Similarity=0.287 Sum_probs=33.0
Q ss_pred CCcceEEEeeCC--cEEEEEeCCHHHHHHHHHHHHHHHHH
Q 006831 278 DLRFCFRIISPT--KVYTLQAENTLDQMDWIEKINGVIAS 315 (629)
Q Consensus 278 drrfcF~Iit~~--rty~LqAeSe~E~~~WI~aI~~aI~~ 315 (629)
..+++|.|+..+ ..|+|+|.|+++.+.||++|.-|+..
T Consensus 74 ~~~~~f~L~~~~~~~~~~f~~Ktee~K~kWm~al~~a~sn 113 (116)
T cd01223 74 RWKYGFYLAHKQGKTGFTFYFKTEHLRKKWLKALEMAMSN 113 (116)
T ss_pred ceEEEEEEEecCCCccEEEEeCCHHHHHHHHHHHHHHHhc
Confidence 356889999877 57999999999999999999988754
No 105
>KOG3531 consensus Rho guanine nucleotide exchange factor CDEP [Signal transduction mechanisms]
Probab=95.77 E-value=0.0037 Score=72.09 Aligned_cols=92 Identities=21% Similarity=0.426 Sum_probs=65.6
Q ss_pred eEeeeeeeccCCCCCCceeEEEEEecCceEEEEeCCCCCCCcCCCcccccCCCCCCccccccccccccccCCCccccccc
Q 006831 179 IKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKSV 258 (629)
Q Consensus 179 iKqGyL~Krs~~~~k~WkRRwFvL~~~glLyYy~~~~~~~~g~~~~~~~~~~~~~~~g~g~l~~~~~~~~~g~v~d~~~~ 258 (629)
+..|||+.+=++. ..|.|-|+|..+ -.||+|++..+. .
T Consensus 925 qLsg~Llrkfkns-sgwqkLwvvft~-fcl~fyKS~qD~----------------------------------------~ 962 (1036)
T KOG3531|consen 925 QLSGYLLRKFKNS-SGWQKLWVVFTN-FCLFFYKSHQDS----------------------------------------E 962 (1036)
T ss_pred hhhHHHHHHhhcc-ccceeeeeeecc-eeeEeecccccc----------------------------------------c
Confidence 5679998775553 579999999984 567777665442 0
Q ss_pred eeeEeeccccee--ecCCCCCCCcceEEEeeCCcEEEEEeCCHHHHHHHHHHHHHH
Q 006831 259 ARHTVNLLTSTI--KPDADQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGV 312 (629)
Q Consensus 259 ~~~~i~l~~~~v--k~~~d~~drrfcF~Iit~~rty~LqAeSe~E~~~WI~aI~~a 312 (629)
+...+.|++-++ ...++...+.|.|.|.-.+..|+|.||++--...||++|+.+
T Consensus 963 ~laslPlLgysvs~P~~~d~i~K~~vfkl~fk~hvyffraes~yt~~rw~evi~~a 1018 (1036)
T KOG3531|consen 963 PLASLPLLGYSVSIPAEPDPIQKDYVFKLKFKSHVYFFRAESYYTFERWMEVITDA 1018 (1036)
T ss_pred ccccccccccccCCCCCCCCcchhheeeeehhhhHHHHhhhhhhhhhhHHHHhhcC
Confidence 112223333222 223456678899999999999999999999999999998744
No 106
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=95.76 E-value=0.002 Score=76.14 Aligned_cols=76 Identities=22% Similarity=0.229 Sum_probs=64.0
Q ss_pred HHhccCCCCCCCCCCC-CCCceecccceeEeccccccccccCcccceeeEeecCCCcCChhHHHHHhhcChhHHHHHHHh
Q 006831 397 LRRVYGNNKCADCGAS-EPDWASLNLGVLICIQCSGVHRNLGVHISKVRSLTLDVKVWEPSVLNLFQSLGNIYANSVWEE 475 (629)
Q Consensus 397 l~~~p~N~~CaDCg~~-~p~w~s~n~Gv~lC~~CsgvHR~LG~hiSkVrSl~lD~~~w~~~~l~~~~~~GN~~~N~i~e~ 475 (629)
+.....+..|++|++. ...|+++|+.+.+|+.|+++|+.+|.|++..+++.||. ...+.+...-|+..++..|..
T Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~----ga~vn~~d~~g~~plh~~~~~ 699 (785)
T KOG0521|consen 624 LVKASSDGECLPRIATALAHGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQN----GADVNALDSKGRTPLHHATAS 699 (785)
T ss_pred HHHhccCccchhhhhhhhcchhhhccchhhhcccchhhhhhccchHHHHHHHHhc----CCcchhhhccCCCcchhhhhh
Confidence 3344568999999996 46899999999999999999999999999999999992 334888888899888777754
Q ss_pred h
Q 006831 476 L 476 (629)
Q Consensus 476 ~ 476 (629)
.
T Consensus 700 g 700 (785)
T KOG0521|consen 700 G 700 (785)
T ss_pred c
Confidence 4
No 107
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=95.70 E-value=0.092 Score=53.08 Aligned_cols=86 Identities=15% Similarity=0.259 Sum_probs=71.2
Q ss_pred hhhhhHhHHHHHHHHHHhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 006831 8 VAFNGDGNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRFF 87 (629)
Q Consensus 8 ~~Fe~~q~kyd~~~~ky~slsk~k~~~~~~E~a~eL~~aRk~f~~asldyv~~l~~vq~kk~~e~le~l~~~~~a~~~ff 87 (629)
++.+..--.||.++.|+.+-++.. ...+++|..|...|.++.=+....|..|...-- +.+..+..|+.||+.||
T Consensus 121 KkLe~rRLdyD~~ksk~~kak~~~-----~~~eeElr~Ae~kfees~E~a~~~M~~i~~~e~-e~~~~L~~lv~AQl~Yh 194 (215)
T cd07593 121 KKLESRRLAYDAALTKSQKAKKED-----SRLEEELRRAKAKYEESSEDVEARMVAIKESEA-DQYRDLTDLLDAELDYH 194 (215)
T ss_pred HHHHHHHHHHHHHHHHHHhccccc-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHH
Confidence 455666678999998887764332 457889999999999999888889998887655 89999999999999999
Q ss_pred hhhhHhhhhchH
Q 006831 88 KQGYELLHQMEP 99 (629)
Q Consensus 88 ~~g~e~~~~l~p 99 (629)
.++++++.++..
T Consensus 195 ~q~~e~L~~l~~ 206 (215)
T cd07593 195 QQSLDVLREVRQ 206 (215)
T ss_pred HHHHHHHHHHHH
Confidence 999998877654
No 108
>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.
Probab=95.69 E-value=0.079 Score=54.05 Aligned_cols=89 Identities=11% Similarity=0.190 Sum_probs=71.5
Q ss_pred hhhhhHhHHHHHHHHHHhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 006831 8 VAFNGDGNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRFF 87 (629)
Q Consensus 8 ~~Fe~~q~kyd~~~~ky~slsk~k~~~~~~E~a~eL~~aRk~f~~asldyv~~l~~vq~kk~~e~le~l~~~~~a~~~ff 87 (629)
++.+..--.||.+..|+.+. |.++.....+.+|..|...|.++.=+-...|..|...-- +.+..|..|+.|++.||
T Consensus 140 KkLe~rRLd~D~~k~r~~kA---k~~~~~~~~e~elr~Ae~kF~~~~E~a~~~M~~i~~~~~-~~~~~L~~lv~AQl~Yh 215 (229)
T cd07594 140 KLLENKRLDLDACKTRVKKA---KSAEAIEQAEQDLRVAQSEFDRQAEITKLLLEGISSTHA-NHLRCLRDFVEAQMTYY 215 (229)
T ss_pred HHHHHHHHHHHHHHHHHhhc---CCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHH
Confidence 55667777899999987543 344434567889999999999988777778888876544 89999999999999999
Q ss_pred hhhhHhhhhchHH
Q 006831 88 KQGYELLHQMEPF 100 (629)
Q Consensus 88 ~~g~e~~~~l~p~ 100 (629)
.++++.+.+|.+.
T Consensus 216 ~q~~e~L~~l~~~ 228 (229)
T cd07594 216 AQCYQYMDDLQRQ 228 (229)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999887653
No 109
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.67 E-value=0.069 Score=48.04 Aligned_cols=53 Identities=21% Similarity=0.327 Sum_probs=39.2
Q ss_pred eEeecccceeecCCCCCCCcceEEEeeCC-cEEEEEeCCHHHHHHHHHHHHHHH
Q 006831 261 HTVNLLTSTIKPDADQSDLRFCFRIISPT-KVYTLQAENTLDQMDWIEKINGVI 313 (629)
Q Consensus 261 ~~i~l~~~~vk~~~d~~drrfcF~Iit~~-rty~LqAeSe~E~~~WI~aI~~aI 313 (629)
+.+.+..-+|....+....++.|+|..+. -...+.|.+.+|..+||..|+..+
T Consensus 56 GkLPL~~i~v~~lEd~e~~~~aFeI~G~li~~i~v~C~~~~e~~~Wl~hL~~~~ 109 (111)
T cd01225 56 GKLPLTGIIVTRLEDTEALKNAFEISGPLIERIVVVCNNPQDAQEWVELLNANN 109 (111)
T ss_pred eeecccccEEechHhccCccceEEEeccCcCcEEEEeCCHHHHHHHHHHHHhhc
Confidence 44555555554323344568999999887 678888999999999999998754
No 110
>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.
Probab=95.39 E-value=0.21 Score=51.44 Aligned_cols=98 Identities=16% Similarity=0.135 Sum_probs=74.1
Q ss_pred hhhhhHhHHHHHHHHHHhcccCCC------CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 006831 8 VAFNGDGNFVLQAREKFLSLRKST------RMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMD 81 (629)
Q Consensus 8 ~~Fe~~q~kyd~~~~ky~slsk~k------~~~~~~E~a~eL~~aRk~f~~asldyv~~l~~vq~kk~~e~le~l~~~~~ 81 (629)
++.+..--+||.+..|+-+-.++- .+..+....+++.++|..|+++.=.|+..|-.+ .-+..+++..++.++.
T Consensus 128 kkLe~~RLD~D~~K~r~~~a~~~~~~~~~~~~~K~~~l~ee~e~a~~k~E~~kD~~~~dm~~~-l~~e~e~~~~l~~lv~ 206 (246)
T cd07618 128 KQLAKLVLDWDSARGRYNQAHKSSGTNFQAMPSKIDMLKEEMDEAGNKVEQCKDQLAADMYNF-ASKEGEYAKFFVLLLE 206 (246)
T ss_pred HHHHhHHhhHHHHHHHHHhccccCccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCHHHHHHHHHHHH
Confidence 567788889999999986544311 112233445666777777777776666666666 3677799999999999
Q ss_pred HHHHHHhhhhHhhhhchHHHHHHHH
Q 006831 82 AHLRFFKQGYELLHQMEPFINQVLA 106 (629)
Q Consensus 82 a~~~ff~~g~e~~~~l~p~~~~l~~ 106 (629)
+|..|+++.+++++.+-|.|+.+..
T Consensus 207 aQ~eYHr~a~e~Le~~~p~i~~~~~ 231 (246)
T cd07618 207 AQADYHRKALAVIEKVLPEIQAHQD 231 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998887765
No 111
>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=94.87 E-value=0.25 Score=50.31 Aligned_cols=95 Identities=14% Similarity=0.234 Sum_probs=75.5
Q ss_pred hhhhhHhHHHHHHHHHHhcccCCCCc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHHH
Q 006831 8 VAFNGDGNFVLQAREKFLSLRKSTRM----DVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAV-GGTMDA 82 (629)
Q Consensus 8 ~~Fe~~q~kyd~~~~ky~slsk~k~~----~~~~E~a~eL~~aRk~f~~asldyv~~l~~vq~kk~~e~le~l-~~~~~a 82 (629)
++-+...-+||.++.++-+|..+++. ..+..++++|..|+..|..--=.|.-.|..+-..+- .|+.++ -+++..
T Consensus 115 ~KR~~Kl~DYD~~r~~~~kl~~K~~k~~~~~KL~kae~el~~Ak~~ye~~N~~L~~ELP~l~~~r~-~f~~p~Fqsl~~~ 193 (225)
T cd07590 115 KRREQSLQEYERLQAKVEKLAEKEKTGPNLAKLEQAEKALAAARADFEKQNIKLLEELPKFYNGRT-DYFQPCFEALIKS 193 (225)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHcc-HHHHHHHHHHHHH
Confidence 35566778999999999988755543 456788899999999999888888888888865544 666655 489999
Q ss_pred HHHHHhhhhHhhhhchHHHHH
Q 006831 83 HLRFFKQGYELLHQMEPFINQ 103 (629)
Q Consensus 83 ~~~ff~~g~e~~~~l~p~~~~ 103 (629)
+.+||..++..+.++.++++.
T Consensus 194 Ql~f~~e~~k~~~~l~~~~d~ 214 (225)
T cd07590 194 QVLYYSQSTKIFTQLAPNLDN 214 (225)
T ss_pred HHHHHHHHHHHHHHHHHhhcc
Confidence 999999999998888777654
No 112
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=94.76 E-value=0.067 Score=62.32 Aligned_cols=97 Identities=26% Similarity=0.391 Sum_probs=62.4
Q ss_pred eeEeeeeeeccCC---------CCCCceeEEEEEecCceEEEEeCCCCCCCcCCCcccccCCCCCCcccccccccccccc
Q 006831 178 TIKQGYLSKRSSN---------LRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHY 248 (629)
Q Consensus 178 ~iKqGyL~Krs~~---------~~k~WkRRwFvL~~~glLyYy~~~~~~~~g~~~~~~~~~~~~~~~g~g~l~~~~~~~~ 248 (629)
+...|+|++.-.. .+-.-.|+||||- +|.|+||.+.....+
T Consensus 492 ~~~~~fLyc~~sa~~kl~~drr~~Ee~nr~wcVlg-~g~ls~fen~~S~tP----------------------------- 541 (1186)
T KOG1117|consen 492 TFLCGFLYCAPSAASKLSSDRRLREETNRKWCVLG-GGFLSYFENEKSTTP----------------------------- 541 (1186)
T ss_pred ccccceeeechhhccCCCChhhhcccCCCceEEcC-cchhhhhhhcCCCCC-----------------------------
Confidence 4456999986433 2345678999994 799999987754310
Q ss_pred CCCccccccceeeEeecccceeecCCCC---CCCcceEEEeeCC-cEEEEEeCCHHHHHHHHHHHHHHH
Q 006831 249 HGGVHDEKSVARHTVNLLTSTIKPDADQ---SDLRFCFRIISPT-KVYTLQAENTLDQMDWIEKINGVI 313 (629)
Q Consensus 249 ~g~v~d~~~~~~~~i~l~~~~vk~~~d~---~drrfcF~Iit~~-rty~LqAeSe~E~~~WI~aI~~aI 313 (629)
.|. +.++-..|..-..++. ..-.|.|+|..+. |.|+|-+++.+++..|..+|-..-
T Consensus 542 ~~l---------I~~~Eivclav~~pd~~pn~~~~f~fE~~l~~er~~~fgle~ad~l~~wt~aiaKhf 601 (1186)
T KOG1117|consen 542 NGL---------ININEIVCLAVHPPDTYPNTGFIFIFEIYLPGERVFLFGLETADALRKWTEAIAKHF 601 (1186)
T ss_pred Cce---------eeccceEEEeecCCCCCCCcCceeEEEEeecccceEEeecccHHHHHHHHHHHHHhc
Confidence 011 1111122222221222 1345899999886 999999999999999998776443
No 113
>PF15406 PH_6: Pleckstrin homology domain
Probab=94.69 E-value=0.079 Score=47.40 Aligned_cols=30 Identities=13% Similarity=0.318 Sum_probs=25.4
Q ss_pred ceEEEeeCCcEEEEEeCCHHHHHHHHHHHH
Q 006831 281 FCFRIISPTKVYTLQAENTLDQMDWIEKIN 310 (629)
Q Consensus 281 fcF~Iit~~rty~LqAeSe~E~~~WI~aI~ 310 (629)
.-|.+...+...+|+|.|..||+.||.+|.
T Consensus 81 ~kF~f~~~G~khtF~A~s~aERD~Wv~~lk 110 (112)
T PF15406_consen 81 NKFHFKIKGHKHTFEAASAAERDNWVAQLK 110 (112)
T ss_pred ceEEEEeCCceeeeecCCHHHhccHHHHhh
Confidence 345555588999999999999999999885
No 114
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=94.48 E-value=0.051 Score=42.00 Aligned_cols=43 Identities=16% Similarity=0.090 Sum_probs=29.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCccccCCCCCCCCcchHHhhhhh
Q 006831 544 QLWESVRDNDKKAVYRQIICSEPNVNAIHGQASYGKRLPLATVMEM 589 (629)
Q Consensus 544 ~l~~av~~~d~~~~~~~l~~~gadvn~~~~~~~~~t~l~la~~~~~ 589 (629)
-|..|++.++++.+- .|+..|+|+|... ..+.||||.|+..+.
T Consensus 4 ~lh~A~~~g~~~~~~-~Ll~~~~din~~d--~~g~t~lh~A~~~g~ 46 (54)
T PF13637_consen 4 PLHWAARSGNLEIVK-LLLEHGADINAQD--EDGRTPLHYAAKNGN 46 (54)
T ss_dssp HHHHHHHTT-HHHHH-HHHHTTSGTT-B---TTS--HHHHHHHTT-
T ss_pred HHHHHHHhCCHHHHH-HHHHCCCCCCCCC--CCCCCHHHHHHHccC
Confidence 367899999988765 4557799999984 358999999998773
No 115
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=94.35 E-value=0.25 Score=43.27 Aligned_cols=30 Identities=30% Similarity=0.565 Sum_probs=25.4
Q ss_pred EEEe-eCCcEEEEEeCCHHHHHHHHHHHHHH
Q 006831 283 FRII-SPTKVYTLQAENTLDQMDWIEKINGV 312 (629)
Q Consensus 283 F~Ii-t~~rty~LqAeSe~E~~~WI~aI~~a 312 (629)
|.+- ++.++|+|.|.|..|+.+||++|+..
T Consensus 63 ~~~~~~~~KSf~~~asS~~Er~eW~~hI~~~ 93 (96)
T cd01228 63 FRIHNKNGKSYTFLLSSDYERSEWRESIQKL 93 (96)
T ss_pred hhccccCCceEEEEecCHHHHHHHHHHHHHH
Confidence 4444 57899999999999999999999753
No 116
>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra
Probab=94.32 E-value=0.38 Score=48.96 Aligned_cols=84 Identities=18% Similarity=0.258 Sum_probs=66.4
Q ss_pred hhhhhHhHHHHHHHHHHhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 006831 8 VAFNGDGNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRFF 87 (629)
Q Consensus 8 ~~Fe~~q~kyd~~~~ky~slsk~k~~~~~~E~a~eL~~aRk~f~~asldyv~~l~~vq~kk~~e~le~l~~~~~a~~~ff 87 (629)
++.+..--.||..+.|+. |. .+++|..+...|.++.=+.+..|..+... ..+.+..+..|+.||..||
T Consensus 135 KkLe~rRLdyD~~k~k~~---k~--------~eeEl~~Ae~kfe~s~E~a~~~M~~il~~-e~e~~~~L~~lveAQl~Yh 202 (223)
T cd07592 135 KKLEGRRLDYDYKKRKQG---KG--------PDEELKQAEEKFEESKELAENSMFNLLEN-DVEQVSQLSALVEAQLDYH 202 (223)
T ss_pred HHHHHHHHHHHHHHHhcc---cC--------chHHHHHHHHHHHHHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHHHH
Confidence 455556667887776642 11 46889999999999998888888888774 3589999999999999999
Q ss_pred hhhhHhhhhchHHHHH
Q 006831 88 KQGYELLHQMEPFINQ 103 (629)
Q Consensus 88 ~~g~e~~~~l~p~~~~ 103 (629)
.++++.+.++.+.+.+
T Consensus 203 ~~~~e~L~~l~~~L~~ 218 (223)
T cd07592 203 RQSAEILEELQSKLQE 218 (223)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999887776653
No 117
>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact
Probab=94.24 E-value=0.3 Score=49.79 Aligned_cols=88 Identities=10% Similarity=0.199 Sum_probs=66.0
Q ss_pred hhhhhHhHHHHHHHHHHhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 006831 8 VAFNGDGNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRFF 87 (629)
Q Consensus 8 ~~Fe~~q~kyd~~~~ky~slsk~k~~~~~~E~a~eL~~aRk~f~~asldyv~~l~~vq~kk~~e~le~l~~~~~a~~~ff 87 (629)
++.+..--+||.+..|+.+ .|+++.-...+.+|..++..|.++.=+....+..|. ....+++..+..|+.||+.||
T Consensus 140 KkLe~rRLdyD~~K~r~~k---Ak~~~~~~~~e~elr~ae~efees~E~a~~~m~~i~-~~~~e~~~~L~~lv~AQl~Yh 215 (229)
T cd07616 140 KLLQNKRLDLDAAKTRLKK---AKVAEARAAAEQELRITQSEFDRQAEITRLLLEGIS-STHAHHLRCLNDFVEAQMTYY 215 (229)
T ss_pred HHHHHHHHHHHHHHHHHhc---CCcchhhcchHHHHHHHHHHHHHHHHHHHHHHHhhh-hcChHHHHHHHHHHHHHHHHH
Confidence 4566666789999998743 334444344688888999999877755555555554 335689999999999999999
Q ss_pred hhhhHhhhhchH
Q 006831 88 KQGYELLHQMEP 99 (629)
Q Consensus 88 ~~g~e~~~~l~p 99 (629)
.++++.+.+|..
T Consensus 216 ~~~~e~L~~L~~ 227 (229)
T cd07616 216 AQCYQYMLDLQK 227 (229)
T ss_pred HHHHHHHHHHHh
Confidence 999999887653
No 118
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=93.82 E-value=0.57 Score=47.67 Aligned_cols=93 Identities=23% Similarity=0.243 Sum_probs=72.4
Q ss_pred hhhhHhHHHHHHHHHHhcccCCC--CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH-HHHHHHHH
Q 006831 9 AFNGDGNFVLQAREKFLSLRKST--RMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVG-GTMDAHLR 85 (629)
Q Consensus 9 ~Fe~~q~kyd~~~~ky~slsk~k--~~~~~~E~a~eL~~aRk~f~~asldyv~~l~~vq~kk~~e~le~l~-~~~~a~~~ 85 (629)
+-+...-+||.++.++-+|..++ ++..+..++++|..|+..|...-=.|.-.|..+-.-.- .|+.+++ +++..|.+
T Consensus 117 KR~~KllDYD~~~~k~~kl~~K~~kd~~kL~kae~el~~a~~~Ye~lN~~Lk~ELP~l~~~r~-~~l~~~f~s~~~iQ~~ 195 (224)
T cd07591 117 KRNHKLLDYDAARAKVRKLIDKPSEDPTKLPRAEKELDEAKEVYETLNDQLKTELPQLVDLRI-PYLDPSFEAFVKIQLR 195 (224)
T ss_pred HHHhhHhhHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 34455667888888888775443 45667889999999999999998888888888866554 6766555 88999999
Q ss_pred HHhhhhHhhhhchHHHH
Q 006831 86 FFKQGYELLHQMEPFIN 102 (629)
Q Consensus 86 ff~~g~e~~~~l~p~~~ 102 (629)
||.++|..+.++..++.
T Consensus 196 ~~~~~y~~l~~~~~~~~ 212 (224)
T cd07591 196 FFTEGYERLAQVQRYLD 212 (224)
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 99999998877666554
No 119
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=93.33 E-value=0.92 Score=42.48 Aligned_cols=36 Identities=31% Similarity=0.442 Sum_probs=31.1
Q ss_pred cceEEEeeCC--cEEEEEeCCHHHHHHHHHHHHHHHHH
Q 006831 280 RFCFRIISPT--KVYTLQAENTLDQMDWIEKINGVIAS 315 (629)
Q Consensus 280 rfcF~Iit~~--rty~LqAeSe~E~~~WI~aI~~aI~~ 315 (629)
+.+|+|-+.+ .+|+|||.|.+..+.|+..|+..+..
T Consensus 80 ~~kFeiw~~~~~~~yilqA~t~e~K~~Wv~~I~~iL~~ 117 (133)
T cd01227 80 TKKFEIWYNAREEVYILQAPTPEIKAAWVNEIRKVLTS 117 (133)
T ss_pred ccEEEEEeCCCCcEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 6778888765 58999999999999999999988754
No 120
>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins localized at synapses that interacts with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated e
Probab=93.29 E-value=0.82 Score=46.49 Aligned_cols=84 Identities=15% Similarity=0.209 Sum_probs=65.8
Q ss_pred hhhhhHhHHHHHHHHHHhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 006831 8 VAFNGDGNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRFF 87 (629)
Q Consensus 8 ~~Fe~~q~kyd~~~~ky~slsk~k~~~~~~E~a~eL~~aRk~f~~asldyv~~l~~vq~kk~~e~le~l~~~~~a~~~ff 87 (629)
++.+..--.||....|. .+ . ..+++..|+-.|+++.=+....|..|...-- +.+..+..|+.||+.|+
T Consensus 135 KkLe~rRLd~D~~K~r~---~k--~------~~eE~~~A~~kfees~E~a~~~M~n~le~e~-e~~~~L~~lv~AQl~Yh 202 (223)
T cd07615 135 KKLEGRRLDFDYKKKRQ---GK--I------PDEEIRQAVEKFEESKELAERSMFNFLENDV-EQVSQLSVLIEAALDYH 202 (223)
T ss_pred HHHHHHHHHHHHHHHcC---CC--C------cHHHHHHHHHHHHHHHHHHHHHHHHHHHcCh-HHHHHHHHHHHHHHHHH
Confidence 44555555677655443 11 1 2778889999999998888888888877644 89999999999999999
Q ss_pred hhhhHhhhhchHHHHH
Q 006831 88 KQGYELLHQMEPFINQ 103 (629)
Q Consensus 88 ~~g~e~~~~l~p~~~~ 103 (629)
++..+++.++.|.+.+
T Consensus 203 ~~a~eiL~~l~~~l~~ 218 (223)
T cd07615 203 RQSTEILEDLQSKLQN 218 (223)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999888764
No 121
>cd07613 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. Endophilin-A1 (or endophilin-1) is also referred to as SH3P4 (SH3 domain containing protein 4) or SH3GL2 (SH3 domain containing Grb2-like protein 2). It is localized in presynaptic nerve terminals. It plays many roles i
Probab=93.19 E-value=0.79 Score=46.59 Aligned_cols=84 Identities=15% Similarity=0.208 Sum_probs=65.3
Q ss_pred hhhhhHhHHHHHHHHHHhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 006831 8 VAFNGDGNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRFF 87 (629)
Q Consensus 8 ~~Fe~~q~kyd~~~~ky~slsk~k~~~~~~E~a~eL~~aRk~f~~asldyv~~l~~vq~kk~~e~le~l~~~~~a~~~ff 87 (629)
++.+..--.||....|.-+. .+++|..|...|.++.=+....|..|...-- +.+..+..|+.||+.|+
T Consensus 135 KkLe~rRLd~D~~K~r~~k~-----------~eeElr~A~~kFees~E~a~~~M~n~l~~e~-e~~~~L~~fveAQl~Yh 202 (223)
T cd07613 135 KKLEGRRLDFDYKKKRQGKI-----------PDEELRQALEKFDESKEIAESSMFNLLEMDI-EQVSQLSALVQAQLEYH 202 (223)
T ss_pred HHHHHHHHhHHHHHHhCCCC-----------cHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc-hHHHHHHHHHHHHHHHH
Confidence 34455555677655544211 3788999999999988777778888877644 89999999999999999
Q ss_pred hhhhHhhhhchHHHHH
Q 006831 88 KQGYELLHQMEPFINQ 103 (629)
Q Consensus 88 ~~g~e~~~~l~p~~~~ 103 (629)
.++++++.++.|.+++
T Consensus 203 ~qa~eiL~~l~~~l~~ 218 (223)
T cd07613 203 KQATQILQQVTVKLED 218 (223)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999998888775
No 122
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=92.87 E-value=0.84 Score=47.02 Aligned_cols=87 Identities=18% Similarity=0.180 Sum_probs=65.6
Q ss_pred hhhhhHhHHHHHHHHHHhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 006831 8 VAFNGDGNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRFF 87 (629)
Q Consensus 8 ~~Fe~~q~kyd~~~~ky~slsk~k~~~~~~E~a~eL~~aRk~f~~asldyv~~l~~vq~kk~~e~le~l~~~~~a~~~ff 87 (629)
++.+..--+||.++.++.+.++..+. .+...++..+...|..+.=+-+..|..|-.. .++++.+..|+.||+.||
T Consensus 154 Kkle~~RLd~D~~K~~~~ka~~~~k~---~~~~~e~E~aEdef~~a~E~a~~~M~~il~~--~e~i~~L~~fv~AQl~Yh 228 (242)
T cd07600 154 KKVEDKRLQLDTARAELKSAEPAEKQ---EAARVEVETAEDEFVSATEEAVELMKEVLDN--PEPLQLLKELVKAQLAYH 228 (242)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccc---cchHHHHHHHHHHHHHhHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHH
Confidence 45566667899999988665432221 2345666678888888876667788888333 789999999999999999
Q ss_pred hhhhHhhhhchH
Q 006831 88 KQGYELLHQMEP 99 (629)
Q Consensus 88 ~~g~e~~~~l~p 99 (629)
.++++.+.++.+
T Consensus 229 ~~~~e~L~~l~~ 240 (242)
T cd07600 229 KTAAELLEELLS 240 (242)
T ss_pred HHHHHHHHHHhh
Confidence 999999988765
No 123
>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated
Probab=92.85 E-value=0.98 Score=45.94 Aligned_cols=84 Identities=17% Similarity=0.251 Sum_probs=63.8
Q ss_pred hhhhhHhHHHHHHHHHHhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 006831 8 VAFNGDGNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRFF 87 (629)
Q Consensus 8 ~~Fe~~q~kyd~~~~ky~slsk~k~~~~~~E~a~eL~~aRk~f~~asldyv~~l~~vq~kk~~e~le~l~~~~~a~~~ff 87 (629)
++.+..--.||....|+ .| .+ +++|-.+...|.++.=+....|..|...-- +.++.+..|+.||+.||
T Consensus 135 KkLe~rRLdyD~~K~r~---~k--~~------eeelr~a~ekFees~E~a~~~M~~il~~e~-e~~~~L~~lveAQl~Yh 202 (223)
T cd07614 135 KKLEGRRLDFDYKKKRQ---GK--IP------DEELRQAMEKFEESKEVAETSMHNLLETDI-EQVSQLSALVDAQLDYH 202 (223)
T ss_pred HHHHHHHHHHHHHHHcC---CC--Cc------hHHHHHHHHHHHHHHHHHHHHHHHHHhCCh-HHHHHHHHHHHHHHHHH
Confidence 44555556677766554 21 11 467788888999888888888888877654 89999999999999999
Q ss_pred hhhhHhhhhchHHHHH
Q 006831 88 KQGYELLHQMEPFINQ 103 (629)
Q Consensus 88 ~~g~e~~~~l~p~~~~ 103 (629)
.++++++.++.+.+.+
T Consensus 203 ~qa~eiL~~l~~~l~~ 218 (223)
T cd07614 203 RQAVQILDELAEKLKR 218 (223)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999998887666553
No 124
>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=92.40 E-value=1.9 Score=44.49 Aligned_cols=98 Identities=15% Similarity=0.169 Sum_probs=64.5
Q ss_pred hhhhhHhHHHHHHHHHHhcccCCCC--------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 006831 8 VAFNGDGNFVLQAREKFLSLRKSTR--------MDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGT 79 (629)
Q Consensus 8 ~~Fe~~q~kyd~~~~ky~slsk~k~--------~~~~~E~a~eL~~aRk~f~~asldyv~~l~~vq~kk~~e~le~l~~~ 79 (629)
++.++.--+||.+..|+.+-+++.. ..-..++-.++.++-..|..+.=.+...|-.+ ..+..+..+.+..+
T Consensus 128 K~Le~~RLD~D~~K~r~~~a~~~~~~~~~~~~~~~k~e~lr~e~E~ae~~~e~~kd~~~~~m~~~-l~~e~e~~~~l~~L 206 (248)
T cd07619 128 KHLAKLVLDMDSSRTRWQQSSKSSGLSSNLQPTGAKADALREEMEEAANRMEICRDQLSADMYSF-VAKEIDYANYFQTL 206 (248)
T ss_pred HHHHhhHhhHHHHHHHHHhccccccccccccCCCCccHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHHHHHHH
Confidence 5677788889999999976554210 00113334444444455544432222222222 23455889999999
Q ss_pred HHHHHHHHhhhhHhhhhchHHHHHHHH
Q 006831 80 MDAHLRFFKQGYELLHQMEPFINQVLA 106 (629)
Q Consensus 80 ~~a~~~ff~~g~e~~~~l~p~~~~l~~ 106 (629)
+.||..|+++.++++..+-|.|+.+..
T Consensus 207 v~AQleYHr~A~eiLe~l~~~i~~~~~ 233 (248)
T cd07619 207 IEVQAEYHRKSLELLQSVLPQIKAHQE 233 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998888776
No 125
>PF15404 PH_4: Pleckstrin homology domain
Probab=92.23 E-value=1.4 Score=43.48 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=22.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHHH
Q 006831 288 PTKVYTLQAENTLDQMDWIEKINGV 312 (629)
Q Consensus 288 ~~rty~LqAeSe~E~~~WI~aI~~a 312 (629)
+.|+++|.|-|..|++.|+-+|..-
T Consensus 160 ~gks~VF~ARSRqERD~WV~~I~~E 184 (185)
T PF15404_consen 160 SGKSMVFMARSRQERDLWVLAINTE 184 (185)
T ss_pred CCcEEEEEeccHHHHHHHHHHHHhc
Confidence 4589999999999999999999753
No 126
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=91.91 E-value=0.046 Score=61.48 Aligned_cols=97 Identities=20% Similarity=0.347 Sum_probs=63.4
Q ss_pred eEeeeeeeccCCCCCCceeEEEEEecCce-----EEEEeCCCCCCCcCCCcccccCCCCCCccccccccccccccCCCcc
Q 006831 179 IKQGYLSKRSSNLRADWKRRFFVLDSRGL-----LYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVH 253 (629)
Q Consensus 179 iKqGyL~Krs~~~~k~WkRRwFvL~~~gl-----LyYy~~~~~~~~g~~~~~~~~~~~~~~~g~g~l~~~~~~~~~g~v~ 253 (629)
...|||+--+.+.-+.||+|||+|-.-.. ..| +..
T Consensus 465 khsgylyaig~nvwkrwkkrffvlvqvsqytfamcsy-rek--------------------------------------- 504 (1218)
T KOG3543|consen 465 KHSGYLYAIGRNVWKRWKKRFFVLVQVSQYTFAMCSY-REK--------------------------------------- 504 (1218)
T ss_pred ccceeehhhhhHHHHHhHhhEEEEEEhhhhhhHhhhh-hhc---------------------------------------
Confidence 34799999888877899999999963111 111 111
Q ss_pred ccccceeeEeecccceeecCCCC---CCCcceEEEeeCCcEEEEEeCCHHHHHHHHHHHHHHHHHHh
Q 006831 254 DEKSVARHTVNLLTSTIKPDADQ---SDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVIASLL 317 (629)
Q Consensus 254 d~~~~~~~~i~l~~~~vk~~~d~---~drrfcF~Iit~~rty~LqAeSe~E~~~WI~aI~~aI~~~l 317 (629)
+.-+.+-+.|.+-+|...+.. ..-++-|.-+-.+-+..|..+++.|+.-|++|+-++....+
T Consensus 505 --kaepqel~qldgytvdytdp~pglqgg~~ffnavkegdtvifasddeqdr~lwvqamyratgqsy 569 (1218)
T KOG3543|consen 505 --KAEPQELIQLDGYTVDYTDPSPGLQGGKHFFNAVKEGDTVIFASDDEQDRHLWVQAMYRATGQSY 569 (1218)
T ss_pred --ccChHHHhhccCeeeccCCCCCccccchHHHHHhccCceEEeccCchhhhhHHHHHHHHhhCCcC
Confidence 112234445555555443221 12245577777778999999999999999999988765444
No 127
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=91.85 E-value=1.2 Score=44.96 Aligned_cols=86 Identities=17% Similarity=0.141 Sum_probs=68.5
Q ss_pred hhHhHHHHHHHHHHhc-ccCCC-----CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH-HHHHHH
Q 006831 11 NGDGNFVLQAREKFLS-LRKST-----RMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVG-GTMDAH 83 (629)
Q Consensus 11 e~~q~kyd~~~~ky~s-lsk~k-----~~~~~~E~a~eL~~aRk~f~~asldyv~~l~~vq~kk~~e~le~l~-~~~~a~ 83 (629)
+...-+||.+..++.+ +.+++ +...+..++.+|..++..|...-=.|.-.|..+-.... +|+++++ .|+..|
T Consensus 120 ~~k~lDyd~~~~k~~k~~~~k~~~~~kd~~kl~kae~~l~~a~~~y~~lN~~Lk~eLP~l~~~~~-~~~~~~~~~~~~~q 198 (216)
T cd07599 120 DHKKLDYDKLQNKLNKLLQKKKELSLKDEKQLAKLERKLEEAKEEYEALNELLKSELPKLLALAD-EFLPPLFKSFYYIQ 198 (216)
T ss_pred HHHHHhHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHH
Confidence 3455678888888888 66553 44556788999999999999988888889998877766 8888766 788999
Q ss_pred HHHHhhhhHhhhhc
Q 006831 84 LRFFKQGYELLHQM 97 (629)
Q Consensus 84 ~~ff~~g~e~~~~l 97 (629)
++||...|+.+..+
T Consensus 199 l~~~~~~~~~l~~~ 212 (216)
T cd07599 199 LNIYYTLHEYLQEF 212 (216)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999998876543
No 128
>PF15408 PH_7: Pleckstrin homology domain
Probab=91.81 E-value=0.064 Score=45.82 Aligned_cols=33 Identities=24% Similarity=0.371 Sum_probs=26.7
Q ss_pred cceEEEeeCC-cEEEEEeCCHHHHHHHHHHHHHH
Q 006831 280 RFCFRIISPT-KVYTLQAENTLDQMDWIEKINGV 312 (629)
Q Consensus 280 rfcF~Iit~~-rty~LqAeSe~E~~~WI~aI~~a 312 (629)
.|.|-..+++ +...+-|+|.+-|+.||++++.-
T Consensus 63 A~G~L~~~~~~~~~~~FA~S~~~~~~Wi~~mN~~ 96 (104)
T PF15408_consen 63 AFGFLMYSPSRRHVQCFASSKKVCQSWIQVMNSP 96 (104)
T ss_pred EEEEEEecCCcchhhhhhhHHHHHHHHHHHhcCh
Confidence 3677777887 46678999999999999998743
No 129
>cd07611 BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of the T-tubule network. The N-BAR domain of amphiphysin forms a curved dimer with a posit
Probab=91.80 E-value=1.7 Score=43.81 Aligned_cols=92 Identities=16% Similarity=0.187 Sum_probs=65.8
Q ss_pred hHhHHHHHHHHHHhcccC--CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHHHHh
Q 006831 12 GDGNFVLQAREKFLSLRK--STRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLE-AVGGTMDAHLRFFK 88 (629)
Q Consensus 12 ~~q~kyd~~~~ky~slsk--~k~~~~~~E~a~eL~~aRk~f~~asldyv~~l~~vq~kk~~e~le-~l~~~~~a~~~ff~ 88 (629)
.-.-+||+++.++-+|.- +|++..+..++++|..|+..|..-==.|.-.|..+-.. ++.|+. .+=+++..+.+||.
T Consensus 115 hKllDYD~~r~~~~kL~~k~~kDe~KL~kAe~el~~Ak~~ye~lN~~Lk~ELP~L~~~-Ri~f~~psFeal~~~q~~f~~ 193 (211)
T cd07611 115 RKLVDYDSARHHLEALQTSKRKDEGRIAKAEEEFQKAQKVFEEFNVDLQEELPSLWSR-RVGFYVNTFKNVSSLEAKFHK 193 (211)
T ss_pred HHHhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHhhhhHHHHHHHHHHHHH
Confidence 345689999999998853 44566678899999999999977666666677666333 234555 44478888889988
Q ss_pred hhhHhhhhchHHHHHH
Q 006831 89 QGYELLHQMEPFINQV 104 (629)
Q Consensus 89 ~g~e~~~~l~p~~~~l 104 (629)
.-+.+.++|..-|..|
T Consensus 194 E~~k~~~~l~~~~~~l 209 (211)
T cd07611 194 EISVLCHKLYEVMTKL 209 (211)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 8777777766666554
No 130
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=91.74 E-value=1.8 Score=43.72 Aligned_cols=93 Identities=14% Similarity=0.130 Sum_probs=72.0
Q ss_pred hhHhHHHHHHHHHHhcccCCC--CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHHH
Q 006831 11 NGDGNFVLQAREKFLSLRKST--RMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAV-GGTMDAHLRFF 87 (629)
Q Consensus 11 e~~q~kyd~~~~ky~slsk~k--~~~~~~E~a~eL~~aRk~f~~asldyv~~l~~vq~kk~~e~le~l-~~~~~a~~~ff 87 (629)
+...-+||+++.++-+|..++ +...+..++++|..|+..|..--=.|.-.|..+-..+- .|+.++ -+++.++.+||
T Consensus 114 ~~KllDYDr~r~~~~kL~~K~~kde~KL~kae~el~~Ak~~Ye~lN~~L~~ELP~L~~~ri-~f~~p~F~sl~~~q~~F~ 192 (211)
T cd07588 114 GRKLVDYDSARHNLEALKAKKKVDDQKLTKAEEELQQAKKVYEELNTELHEELPALYDSRI-AFYVDTLQSIFAAESVFH 192 (211)
T ss_pred hhHHHhHHHHHHHHHHHHhcccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHH
Confidence 344568999999998886554 56667899999999999999888888888888855444 566654 48889999999
Q ss_pred hhhhHhhhhchHHHHHH
Q 006831 88 KQGYELLHQMEPFINQV 104 (629)
Q Consensus 88 ~~g~e~~~~l~p~~~~l 104 (629)
..-+.+..+|..-|..|
T Consensus 193 ~e~~~~~~~l~~~~~~l 209 (211)
T cd07588 193 KEIGKVNTKLNDVMDGL 209 (211)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 99888777776666554
No 131
>PF06456 Arfaptin: Arfaptin-like domain; InterPro: IPR010504 Arfaptin interacts with ARF1, a small GTPase involved in vesicle budding at the Golgi complex and immature secretory granules. The structure of arfaptin shows that upon binding to a small GTPase, arfaptin forms a an elongated, crescent-shaped dimer of three-helix coiled-coils []. The N-terminal region of ICA69 is similar to arfaptin [].; PDB: 1I4D_B 1I4L_B 1I49_B 1I4T_A 4DCN_D.
Probab=91.33 E-value=2.1 Score=43.80 Aligned_cols=87 Identities=11% Similarity=0.080 Sum_probs=73.1
Q ss_pred hhhhhHhHHHHHHHHHHhcccCCCCcc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 006831 8 VAFNGDGNFVLQAREKFLSLRKSTRMD------VAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMD 81 (629)
Q Consensus 8 ~~Fe~~q~kyd~~~~ky~slsk~k~~~------~~~E~a~eL~~aRk~f~~asldyv~~l~~vq~kk~~e~le~l~~~~~ 81 (629)
++|+.+--.||+++.+.-.++....|+ ..++.......+|..|.+-+.|.+.+|..+.+++--.+-..|..|..
T Consensus 137 k~ye~aR~EY~ay~~~lke~~~e~~~~~~~~~~~~r~~q~~~~~~k~rf~kLr~Dv~~Kl~LL~~~rv~~~~~qL~~~~~ 216 (229)
T PF06456_consen 137 KKYEDARFEYDAYRLWLKEMSDELDPDTAKQEPKFRVAQGNYQEAKERFDKLRSDVLVKLDLLDENRVNVMSHQLVLFQN 216 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--TSTSSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccCchhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 678999999999999998888555443 33677777889999999999999999999999999888889999999
Q ss_pred HHHHHHhhhhHhh
Q 006831 82 AHLRFFKQGYELL 94 (629)
Q Consensus 82 a~~~ff~~g~e~~ 94 (629)
+...||....+.+
T Consensus 217 al~~y~~~~~~~l 229 (229)
T PF06456_consen 217 ALAAYFSGNAQAL 229 (229)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHhHhhC
Confidence 9999998876643
No 132
>cd07612 BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 2 (Bin2) is a BAR domain containing protein that is mainly expressed in hematopoietic cells. It is upregulated during granulocyte differentiation and is thought to function primarily in this lineage. The BAR domain of Bin2 is closely related to the BAR domains of amphiphysins, which function primarily in endocytosis and other membrane remodeling events. Amphiphysins contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Unlike amphiphysins, Bin2 does not appear to contain a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (
Probab=91.19 E-value=1.9 Score=43.48 Aligned_cols=92 Identities=17% Similarity=0.156 Sum_probs=68.5
Q ss_pred hHhHHHHHHHHHHhccc--CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHHHHh
Q 006831 12 GDGNFVLQAREKFLSLR--KSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEA-VGGTMDAHLRFFK 88 (629)
Q Consensus 12 ~~q~kyd~~~~ky~sls--k~k~~~~~~E~a~eL~~aRk~f~~asldyv~~l~~vq~kk~~e~le~-l~~~~~a~~~ff~ 88 (629)
.-.-+||+++.++-++. +++++..+..++++|..|+..|..-==.|.-.|..+-.. |+.|+.+ +=+++..+.+||.
T Consensus 115 ~KllDYD~~R~~~~kl~~k~~kD~~KL~kAe~el~~Ak~~ye~lN~~L~~ELP~L~~~-Ri~f~~psFeal~~~q~~F~~ 193 (211)
T cd07612 115 RKLVDYDSARHHLEALQNAKKKDDAKIAKAEEEFNRAQVVFEDINRELREELPILYDS-RIGCYVTVFQNISNLRDTFYK 193 (211)
T ss_pred HHHhhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHH
Confidence 34567999999988874 444566778899999999999987777777777777433 3345554 4478899999999
Q ss_pred hhhHhhhhchHHHHHH
Q 006831 89 QGYELLHQMEPFINQV 104 (629)
Q Consensus 89 ~g~e~~~~l~p~~~~l 104 (629)
.-+.+..+|..-|..|
T Consensus 194 E~~k~~~~l~~~~~~l 209 (211)
T cd07612 194 EMSKLNHDLYNVMKKL 209 (211)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 8888777776666654
No 133
>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain. LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.
Probab=90.93 E-value=0.89 Score=40.32 Aligned_cols=35 Identities=9% Similarity=0.219 Sum_probs=30.2
Q ss_pred CCCcceEEEeeCC-cEEEEEeCCHHHHHHHHHHHHH
Q 006831 277 SDLRFCFRIISPT-KVYTLQAENTLDQMDWIEKING 311 (629)
Q Consensus 277 ~drrfcF~Iit~~-rty~LqAeSe~E~~~WI~aI~~ 311 (629)
.|+.+.|.|...+ -.|+|.|.++++++.|+..|+.
T Consensus 71 PD~~nTFvLK~~~~~eyI~Ea~d~~q~~SWla~Ir~ 106 (107)
T cd01231 71 PDNLYTFVLKVDDNTDIIFEVGDEQQLNSWLAELRY 106 (107)
T ss_pred cCcccEEEEEecCCceEEEEcCCHHHHHHHHHHHhc
Confidence 3567899998766 5899999999999999999975
No 134
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=90.41 E-value=0.3 Score=38.27 Aligned_cols=39 Identities=18% Similarity=0.061 Sum_probs=23.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCccccCCCCCCCCcchHH
Q 006831 543 QQLWESVRDNDKKAVYRQIICSEPNVNAIHGQASYGKRLPLA 584 (629)
Q Consensus 543 ~~l~~av~~~d~~~~~~~l~~~gadvn~~~~~~~~~t~l~la 584 (629)
--|+.|+..++.+.+..+| ..|+|+|..... +.||||+|
T Consensus 18 T~LH~A~~~g~~~~v~~Ll-~~g~d~~~~d~~--G~Tpl~~A 56 (56)
T PF13857_consen 18 TPLHWAARYGHSEVVRLLL-QNGADPNAKDKD--GQTPLHYA 56 (56)
T ss_dssp -HHHHHHHHT-HHHHHHHH-HCT--TT---TT--S--HHHH-
T ss_pred cHHHHHHHcCcHHHHHHHH-HCcCCCCCCcCC--CCCHHHhC
Confidence 3578899999988776555 899999997664 58999987
No 135
>cd00011 BAR_Arfaptin_like The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin-like proteins, a dimerization module that binds and bends membranes. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization, lipid binding and curvature sensing module present in Arfaptins, PICK1, ICA69, and similar proteins. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also binds to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Protein Interacting with C Kinase 1 (PICK1) plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. Is
Probab=90.26 E-value=3.6 Score=41.28 Aligned_cols=90 Identities=16% Similarity=0.089 Sum_probs=75.3
Q ss_pred hhhhhHhHHHHHHHHHHhcccCCCCcc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 006831 8 VAFNGDGNFVLQAREKFLSLRKSTRMD------VAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMD 81 (629)
Q Consensus 8 ~~Fe~~q~kyd~~~~ky~slsk~k~~~------~~~E~a~eL~~aRk~f~~asldyv~~l~~vq~kk~~e~le~l~~~~~ 81 (629)
++++.+-..||.++-+--.++..-.|+ -.+.+-.+...+|..|.+-+.|.+.+|..+++++--.+-..|..|..
T Consensus 105 ~~ye~aR~EY~a~~l~~ke~~~e~~~~~~~~~~k~r~~q~~~~~~k~kf~kLr~Dv~~Kl~lL~~~r~~~l~~qL~~~~~ 184 (203)
T cd00011 105 KQYEAARLEYDAYRLDLKELSLEPRDDTAGTRGRLRSAQATFQEHRDKFEKLRGDVAIKLKFLEENKIKVMHKQLLLFHN 184 (203)
T ss_pred HHHHHHHHhHHHHHHHHHHhcccCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 578888889999998888886555543 23667788999999999999999999999999998788888889999
Q ss_pred HHHHHHhhhhHhhhhc
Q 006831 82 AHLRFFKQGYELLHQM 97 (629)
Q Consensus 82 a~~~ff~~g~e~~~~l 97 (629)
+...||...+..+++.
T Consensus 185 al~~y~~~~~~~l~~~ 200 (203)
T cd00011 185 TVSAYFAGNQKVLEQT 200 (203)
T ss_pred HHHHHHHHhHHHHHHH
Confidence 9999999888777553
No 136
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain. Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=89.93 E-value=1.3 Score=40.02 Aligned_cols=34 Identities=24% Similarity=0.383 Sum_probs=28.5
Q ss_pred CCcceEEEeeCC----cEEEEEeCCHHHHHHHHHHHHH
Q 006831 278 DLRFCFRIISPT----KVYTLQAENTLDQMDWIEKING 311 (629)
Q Consensus 278 drrfcF~Iit~~----rty~LqAeSe~E~~~WI~aI~~ 311 (629)
....||.|+-.. +++.|-|+|+++++.|+..|+.
T Consensus 77 ~e~~~fTIiy~~~~~~k~L~lVA~s~~~a~~W~~gL~~ 114 (115)
T cd01248 77 LEERCFTIVYGTDLNLKSLDLVAPSEEEAKTWVSGLRK 114 (115)
T ss_pred ccccEEEEEECCCCCeeEEEEEECCHHHHHHHHHHHhh
Confidence 346899999654 5899999999999999998863
No 137
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.91 E-value=1.6 Score=48.43 Aligned_cols=93 Identities=19% Similarity=0.251 Sum_probs=63.9
Q ss_pred hHHHHHHHHHHhcccCCCCcch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHHHHhhh
Q 006831 14 GNFVLQAREKFLSLRKSTRMDV--AVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLE-AVGGTMDAHLRFFKQG 90 (629)
Q Consensus 14 q~kyd~~~~ky~slsk~k~~~~--~~E~a~eL~~aRk~f~~asldyv~~l~~vq~kk~~e~le-~l~~~~~a~~~ff~~g 90 (629)
.-+||.++.+|.++.++++++- +.-+++||..+++.|+.-=-+|...|..|=.. ++.|+. .+-.++..+.+||..+
T Consensus 135 l~DyD~~r~~~~kvq~~k~kd~~k~~KAeeEl~~Aq~~fE~lN~~L~eELP~L~~s-Rv~f~vp~Fqsl~~~q~vf~~Em 213 (460)
T KOG3771|consen 135 LVDYDSARHSFEKLQAKKKKDEAKLAKAEEELEKAQQVFEELNNELLEELPALYSS-RVGFFVPTFQSLFNLQLVFHKEM 213 (460)
T ss_pred hhhhHHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhcchHHHHHHHHHHHHHHH
Confidence 4479999977766655554332 24588999999999988888888877776433 334444 4557788888888888
Q ss_pred hHhhhhchHHHHHHHHH
Q 006831 91 YELLHQMEPFINQVLAY 107 (629)
Q Consensus 91 ~e~~~~l~p~~~~l~~~ 107 (629)
..+.+.|..-+..|...
T Consensus 214 skl~~~L~~v~~kl~dq 230 (460)
T KOG3771|consen 214 SKLYKNLYDVLDKLFDQ 230 (460)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 66666665555555554
No 138
>PF08458 PH_2: Plant pleckstrin homology-like region; InterPro: IPR013666 This domain describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function.
Probab=89.62 E-value=3.5 Score=37.30 Aligned_cols=40 Identities=13% Similarity=0.385 Sum_probs=34.9
Q ss_pred CCCCCcceEEEeeCCcEEEEEeCCHHHHHHHHHHHHHHHH
Q 006831 275 DQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVIA 314 (629)
Q Consensus 275 d~~drrfcF~Iit~~rty~LqAeSe~E~~~WI~aI~~aI~ 314 (629)
++.+.++.|-|.|..+...|.|+|..+.+.|++.|+.-+.
T Consensus 65 e~~~~~~yfgL~T~~G~vEfec~~~~~~k~W~~gI~~mL~ 104 (110)
T PF08458_consen 65 EDGEERRYFGLKTAQGVVEFECDSQREYKRWVQGIQHMLS 104 (110)
T ss_pred cCCceEEEEEEEecCcEEEEEeCChhhHHHHHHHHHHHHH
Confidence 3445789999999999999999999999999999986654
No 139
>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified
Probab=89.55 E-value=2.3 Score=43.17 Aligned_cols=78 Identities=13% Similarity=0.203 Sum_probs=54.1
Q ss_pred hhhhHhHHHHHHHHHHhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHh
Q 006831 9 AFNGDGNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRFFK 88 (629)
Q Consensus 9 ~Fe~~q~kyd~~~~ky~slsk~k~~~~~~E~a~eL~~aRk~f~~asldyv~~l~~vq~kk~~e~le~l~~~~~a~~~ff~ 88 (629)
+.+..--.||....|..+ .+++|..|...|..+.=.....|..|... ..+-|..|..|+.||+.||.
T Consensus 141 kLe~rRLd~D~~K~r~~k------------ae~elr~A~~kf~~~~E~a~~~M~~il~~-~~e~l~~L~~lv~AQl~Yh~ 207 (220)
T cd07617 141 LLQNRRLDLDACKARLKK------------AEHELRVAQTEFDRQAEVTRLLLEGISST-HVNHLRCLHEFVEAQATYYA 207 (220)
T ss_pred HHHHHHHHHHHHHHHHhc------------cHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHH
Confidence 444445567776666422 24688888888877553222234444433 24889999999999999999
Q ss_pred hhhHhhhhchH
Q 006831 89 QGYELLHQMEP 99 (629)
Q Consensus 89 ~g~e~~~~l~p 99 (629)
++++.+.++.+
T Consensus 208 q~~e~L~~l~~ 218 (220)
T cd07617 208 QCYRHMLDLQK 218 (220)
T ss_pred HHHHHHHHHHh
Confidence 99999988765
No 140
>cd07620 BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of SH3-domain Binding Protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. SH3-domain binding protein 1 (SH3BP1 or 3BP-1) is a Rac GTPase activating protein that inhibits Rac-mediated platelet-derived growth factor (PDGF)-induced membrane ruffling. SH3BP1 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=89.41 E-value=3.5 Score=42.62 Aligned_cols=96 Identities=10% Similarity=0.062 Sum_probs=61.9
Q ss_pred hhhhhhHhHHHHHHHHHHhcccCCCC-----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006831 7 TVAFNGDGNFVLQAREKFLSLRKSTR-----------------MDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKR 69 (629)
Q Consensus 7 ~~~Fe~~q~kyd~~~~ky~slsk~k~-----------------~~~~~E~a~eL~~aRk~f~~asldyv~~l~~vq~kk~ 69 (629)
-+++.+.--+||.+..||..-.|+-. ...+.-..+++.++...|+++.=-|...|-.+-.+ .
T Consensus 127 rKkL~k~~LD~D~~K~R~~~a~k~s~~~~~~~~~~~~~~~~~~~~K~~~lkeE~eea~~K~E~~kd~~~a~Mynfl~k-E 205 (257)
T cd07620 127 KKQFAKLTTDWNSAKSRSPQAAGRSPRSGGRSEEVGEHQGIRRANKGEPLKEEEEECWRKLEQCKDQYSADLYHFATK-E 205 (257)
T ss_pred HHHHHhHHhhHHHHHHHHHHhhccccCCccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h
Confidence 46788889999999999854322110 01111234445555555555544444444444444 4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHhhhhchHHHHH
Q 006831 70 FELLEAVGGTMDAHLRFFKQGYELLHQMEPFINQ 103 (629)
Q Consensus 70 ~e~le~l~~~~~a~~~ff~~g~e~~~~l~p~~~~ 103 (629)
.+++..++.|+.+|..|.++..+.++.+-|-|++
T Consensus 206 ~e~a~~l~~lveaQ~~YHrqsl~~Le~~l~~~~~ 239 (257)
T cd07620 206 DSYANYFIRLLELQAEYHKNSLEFLDKNITELKE 239 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4999999999999999999998888776666554
No 141
>KOG1737 consensus Oxysterol-binding protein [Lipid transport and metabolism]
Probab=88.89 E-value=0.27 Score=58.08 Aligned_cols=94 Identities=21% Similarity=0.332 Sum_probs=59.5
Q ss_pred eEeeeeeeccCCCCCCceeEEEEEecCceEEEEeCCCCCCCcCCCcccccCCCCCCccccccccccccccCCCccccccc
Q 006831 179 IKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKSV 258 (629)
Q Consensus 179 iKqGyL~Krs~~~~k~WkRRwFvL~~~glLyYy~~~~~~~~g~~~~~~~~~~~~~~~g~g~l~~~~~~~~~g~v~d~~~~ 258 (629)
-.+|||+|.... .+.|.+|||+|. +|.+.||....... ..
T Consensus 78 ~~~g~l~k~~n~-~~~~~~r~f~l~-~g~ls~~~~~~~~~--------------------------------------~~ 117 (799)
T KOG1737|consen 78 SLEGILLKWRNY-SKGPSSRWFVLS-GGLLSYYFDNSFSK--------------------------------------TT 117 (799)
T ss_pred cccceeeccccc-cCCcccceEEec-CcceeeeccCCccc--------------------------------------cC
Confidence 458999998655 488999999998 89998887664321 01
Q ss_pred eeeEeecccceeecCCCCCCCcceEEEe-eCCcEEEEEeCCHHHHHHHHHHHHHHHHHHh
Q 006831 259 ARHTVNLLTSTIKPDADQSDLRFCFRII-SPTKVYTLQAENTLDQMDWIEKINGVIASLL 317 (629)
Q Consensus 259 ~~~~i~l~~~~vk~~~d~~drrfcF~Ii-t~~rty~LqAeSe~E~~~WI~aI~~aI~~~l 317 (629)
..+.+++.+..+.. .+ +.-+.++ ....+|++.+-+..+++.|+.+++-+-....
T Consensus 118 ~~~~~~~~~a~i~~----~~-~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~l~~~~~~ 172 (799)
T KOG1737|consen 118 CGGGINLVTAWIQN----GE-RMDICSVDGSCQIYLVELSKKLQRQGWLHALELAPLIAV 172 (799)
T ss_pred CCCccccccccccc----CC-CcccchhhcccchhhhhhhHHHhhcchhhhhhhccchhh
Confidence 11223333333221 11 1112222 1247889999999999999999987743333
No 142
>KOG3531 consensus Rho guanine nucleotide exchange factor CDEP [Signal transduction mechanisms]
Probab=88.86 E-value=0.45 Score=55.64 Aligned_cols=45 Identities=16% Similarity=0.184 Sum_probs=38.6
Q ss_pred CCCcceEEEeeCCcEEEEEeCCHHHHHHHHHHHHHHHHHHhccCC
Q 006831 277 SDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVIASLLSFQT 321 (629)
Q Consensus 277 ~drrfcF~Iit~~rty~LqAeSe~E~~~WI~aI~~aI~~~l~~~~ 321 (629)
-.-++||.|.+..+..+..|.+..+.+.|+..++.+|.-+..+..
T Consensus 808 ~s~p~~~ti~~~qk~i~vsast~~~sk~~~~~r~~~i~~~~k~~~ 852 (1036)
T KOG3531|consen 808 WSVPHCFTISGAQKQIYVSASTRRESKKWEFDRRKAIDLAPKKSS 852 (1036)
T ss_pred ccCCceEEEeccceEEEEeccchhhhhhhhhccchhhhhccccCC
Confidence 356899999999999999999999999999999999866655533
No 143
>cd07660 BAR_Arfaptin The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also bind to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Mammals contain at least two isoforms of Arfaptin. Arfaptin 1 has been shown to inhibit the activation of Arf-dependent phospholipase D (PLD) and the secretion of matrix metalloproteinase-9 (MMP-9), an enzyme implicated in cancer invasiveness and metastasis. Arfaptin 2 regulates the aggregation of the protein huntingtin, which is im
Probab=88.70 E-value=3.9 Score=40.96 Aligned_cols=89 Identities=13% Similarity=0.080 Sum_probs=68.0
Q ss_pred hhhhhHhHHHHHHHHHHhcccCCCC----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 006831 8 VAFNGDGNFVLQAREKFLSLRKSTR----MDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAH 83 (629)
Q Consensus 8 ~~Fe~~q~kyd~~~~ky~slsk~k~----~~~~~E~a~eL~~aRk~f~~asldyv~~l~~vq~kk~~e~le~l~~~~~a~ 83 (629)
++|+.+--.||..+...-.+.-..+ ..-+.++..+...+|..|.+-+-|.+++|.-++.++--.+...+..|..|.
T Consensus 104 ~~ye~aR~EYdayr~D~ee~~~~~~~~~~l~r~~~~q~~~~~~k~kf~KLR~DV~~Kl~lLeenrv~vm~~QL~~f~~a~ 183 (201)
T cd07660 104 KQYESARIEYDAYRNDLEALNLGPRDAATSARLEEAQRRFQAHKDKYEKLRNDVSVKLKFLEENKVKVMHKQLLLFHNAI 183 (201)
T ss_pred HHHHhhhHhHHHHhccHHHcccCCCccchHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 4667777777777744433322221 122355677789999999999999999999999999888888999999999
Q ss_pred HHHHhhhhHhhhh
Q 006831 84 LRFFKQGYELLHQ 96 (629)
Q Consensus 84 ~~ff~~g~e~~~~ 96 (629)
..||...++.++.
T Consensus 184 ~ay~sgn~~~L~~ 196 (201)
T cd07660 184 SAYFSGNQKQLEQ 196 (201)
T ss_pred HHHHHhHHHHHHH
Confidence 9999998877653
No 144
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=86.20 E-value=0.66 Score=52.91 Aligned_cols=42 Identities=17% Similarity=0.048 Sum_probs=33.8
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCccccCCCCCCCCcchHHhhhhh
Q 006831 545 LWESVRDNDKKAVYRQIICSEPNVNAIHGQASYGKRLPLATVMEM 589 (629)
Q Consensus 545 l~~av~~~d~~~~~~~l~~~gadvn~~~~~~~~~t~l~la~~~~~ 589 (629)
|++|.+.+.+..+. +|+.+|||++++..+ |.+|||||+..++
T Consensus 116 LHWAar~G~~~vv~-lLlqhGAdpt~~D~~--G~~~lHla~~~~~ 157 (600)
T KOG0509|consen 116 LHWAARNGHISVVD-LLLQHGADPTLKDKQ--GLTPLHLAAQFGH 157 (600)
T ss_pred chHHHHcCcHHHHH-HHHHcCCCCceecCC--CCcHHHHHHHhCc
Confidence 78888888888776 556889999988665 5799999988874
No 145
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=85.75 E-value=0.73 Score=57.95 Aligned_cols=107 Identities=16% Similarity=0.271 Sum_probs=70.3
Q ss_pred eEeeeeeeccC-------CCCCCceeEEEEEecCceEEEEeCCCCCCCcCCCcccccCCCCCCccccccccccccccCCC
Q 006831 179 IKQGYLSKRSS-------NLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGG 251 (629)
Q Consensus 179 iKqGyL~Krs~-------~~~k~WkRRwFvL~~~glLyYy~~~~~~~~g~~~~~~~~~~~~~~~g~g~l~~~~~~~~~g~ 251 (629)
..+|+|+.+-- ...+.|..-||++.... +-+|++.+....+ +..-++|.
T Consensus 2300 ~~eG~L~Rk~~~~A~e~k~~nRsw~~vy~~i~e~e-l~fykD~k~~~a~-----------------------ve~~~r~e 2355 (2473)
T KOG0517|consen 2300 QLEGFLYRKHLLGALEIKASNRSWDNVYCRIREKE-LGFYKDAKKDLAS-----------------------VELLVRGE 2355 (2473)
T ss_pred HHHhHHHHHHHHhhhhhhhhcccHHHHHHHHHhcc-chhhcccCccccc-----------------------chhhccCC
Confidence 46899975421 14578999999998544 4446665432100 00012221
Q ss_pred ccccccceeeEeecccceeecCCCCCCCcceEEEeeCC-cEEEEEeCCHHHHHHHHHHHHHHHHHHhc
Q 006831 252 VHDEKSVARHTVNLLTSTIKPDADQSDLRFCFRIISPT-KVYTLQAENTLDQMDWIEKINGVIASLLS 318 (629)
Q Consensus 252 v~d~~~~~~~~i~l~~~~vk~~~d~~drrfcF~Iit~~-rty~LqAeSe~E~~~WI~aI~~aI~~~l~ 318 (629)
..+.+..+.|.+..+..++++.|.+..+. ..|.|||.++++|..|+.++...+...+.
T Consensus 2356 ---------~~lel~~a~i~~a~dy~kkk~v~~l~~~~gae~llq~k~ee~m~sWL~~~a~~~~~~lk 2414 (2473)
T KOG0517|consen 2356 ---------PPLELDMAAIEVASDYHKKKHVFLLQLPPGAEHLLQAKDEEEMESWLRALAVKRAEALK 2414 (2473)
T ss_pred ---------cchhcchhHHHHHHHHHHHhHhhhhcCCchHHHHHhhccHHHHHHHHHHHHHHHHHHhh
Confidence 12333445555545667788999998765 79999999999999999999999986663
No 146
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=85.65 E-value=0.71 Score=40.63 Aligned_cols=42 Identities=21% Similarity=0.167 Sum_probs=36.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCccccCCCCCCCCcchHHhhhhh
Q 006831 544 QLWESVRDNDKKAVYRQIICSEPNVNAIHGQASYGKRLPLATVMEM 589 (629)
Q Consensus 544 ~l~~av~~~d~~~~~~~l~~~gadvn~~~~~~~~~t~l~la~~~~~ 589 (629)
.+.++|..+++.+|-+.. +.|.|||.++| +.||||.|+-.+|
T Consensus 5 ~~~W~vkNG~~DeVk~~v-~~g~nVn~~~g---gR~plhyAAD~GQ 46 (117)
T KOG4214|consen 5 SVAWNVKNGEIDEVKQSV-NEGLNVNEIYG---GRTPLHYAADYGQ 46 (117)
T ss_pred hHhhhhccCcHHHHHHHH-HccccHHHHhC---CcccchHhhhcch
Confidence 467899999999998765 67999999875 5899999999987
No 147
>KOG2070 consensus Guanine nucleotide exchange factor [Nucleotide transport and metabolism]
Probab=84.72 E-value=10 Score=42.46 Aligned_cols=80 Identities=23% Similarity=0.330 Sum_probs=51.4
Q ss_pred CceeEEEEEecCceEEEEeCCCCCCCcCCCcccccCCCCCCccccccccccccccCCCccccccceeeEeecccceeecC
Q 006831 194 DWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKSVARHTVNLLTSTIKPD 273 (629)
Q Consensus 194 ~WkRRwFvL~~~glLyYy~~~~~~~~g~~~~~~~~~~~~~~~g~g~l~~~~~~~~~g~v~d~~~~~~~~i~l~~~~vk~~ 273 (629)
.=+.|||+|..+.+|++.-.+.. .|-| ..+++.+.+..|...
T Consensus 324 d~~dRy~~LF~~~llflsvs~rM--------------------------------s~fI------yegKlp~tG~iV~kl 365 (661)
T KOG2070|consen 324 DEKDRYLLLFPNVLLFLSVSPRM--------------------------------SGFI------YEGKLPTTGMIVTKL 365 (661)
T ss_pred chhhheeeeccceeeeeEecccc--------------------------------chhh------hccccccceeEEeeh
Confidence 45689999998887776544422 0111 112333333334332
Q ss_pred CCCCCCcceEEEeeCC-cEEEEEeCCHHHHHHHHHHHHH
Q 006831 274 ADQSDLRFCFRIISPT-KVYTLQAENTLDQMDWIEKING 311 (629)
Q Consensus 274 ~d~~drrfcF~Iit~~-rty~LqAeSe~E~~~WI~aI~~ 311 (629)
.+....++.|+|..+. ..+...|+++.|..+|+++++.
T Consensus 366 Edte~~~nafeis~~ti~rIv~~c~~~~~l~~wve~ln~ 404 (661)
T KOG2070|consen 366 EDTENHRNAFEISGSTIERIVVSCNNQQDLQEWVEHLNK 404 (661)
T ss_pred hhhhcccccccccccchhheeeccCChHHHHHHHHHhhh
Confidence 3333456789998877 3567889999999999999985
No 148
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=83.79 E-value=1.8 Score=36.34 Aligned_cols=42 Identities=12% Similarity=0.150 Sum_probs=33.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCccccCCCCCCCCcchHHhhhh
Q 006831 544 QLWESVRDNDKKAVYRQIICSEPNVNAIHGQASYGKRLPLATVME 588 (629)
Q Consensus 544 ~l~~av~~~d~~~~~~~l~~~gadvn~~~~~~~~~t~l~la~~~~ 588 (629)
.|..|+..++++.+ ++|+..|+|+|... ..+.||||+|+..+
T Consensus 29 ~l~~A~~~~~~~~~-~~Ll~~g~~~~~~~--~~g~t~L~~A~~~~ 70 (89)
T PF12796_consen 29 ALHYAAENGNLEIV-KLLLENGADINSQD--KNGNTALHYAAENG 70 (89)
T ss_dssp HHHHHHHTTTHHHH-HHHHHTTTCTT-BS--TTSSBHHHHHHHTT
T ss_pred HHHHHHHcCCHHHH-HHHHHhcccccccC--CCCCCHHHHHHHcC
Confidence 57788888887655 56678999999875 45789999999877
No 149
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=82.79 E-value=21 Score=36.01 Aligned_cols=52 Identities=17% Similarity=0.189 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHHhhhhHhhhh
Q 006831 45 NARTSFEQARFNLVGALSNVEAKKRFEL-LEAVGGTMDAHLRFFKQGYELLHQ 96 (629)
Q Consensus 45 ~aRk~f~~asldyv~~l~~vq~kk~~e~-le~l~~~~~a~~~ff~~g~e~~~~ 96 (629)
..|..-.+.-+...+.-..++++++|-| ++.+..+++....|+.++.+++..
T Consensus 151 ~~~~~ele~~~~~~~r~al~EERrRyc~lv~~~~~~~~~~~~~~~~~~~~L~~ 203 (219)
T PF08397_consen 151 TERQSELEEFEKQSLREALLEERRRYCFLVEKHCSVVKSELAFHNEAVEHLQE 203 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444556666778888999999995 889999999999999998776644
No 150
>cd05394 RasGAP_RASA2 RASA2 (or GAP1(m)) is a member of the GAP1 family of Ras GTPase-activating proteins that includes GAP1_IP4BP (or RASA3), CAPRI, and RASAL. In vitro, RASA2 has been shown to bind inositol 1,3,4,5-tetrakisphosphate (IP4), the water soluble inositol head group of the lipid second messenger phosphatidylinositol 3,4,5-trisphosphate (PIP3). In vivo studies also demonstrated that RASA2 binds PIP3, and it is recruited to the plasma membrane following agonist stimulation of PI 3-kinase. Furthermore, the membrane translocation is a consequence of the ability of its pleckstrin homology (PH) domain to bind PIP3.
Probab=80.88 E-value=1.6 Score=46.65 Aligned_cols=27 Identities=30% Similarity=0.608 Sum_probs=21.9
Q ss_pred ceeEeeeeeeccCC----CCCCceeEEEEEe
Q 006831 177 QTIKQGYLSKRSSN----LRADWKRRFFVLD 203 (629)
Q Consensus 177 ~~iKqGyL~Krs~~----~~k~WkRRwFvL~ 203 (629)
.++|+|+|.||..+ .++.||||||.|.
T Consensus 282 ~~~~e~~~~~r~~~~~~~~~~~~kkr~~~l~ 312 (313)
T cd05394 282 VHLKEGEMYKRAQGRTRIGKKNFKKRWFCLT 312 (313)
T ss_pred hhhHHHHHHhhccCCCccccccchhheeecC
Confidence 46899999998644 4568999999986
No 151
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=80.70 E-value=1.3 Score=43.29 Aligned_cols=38 Identities=21% Similarity=0.078 Sum_probs=23.3
Q ss_pred HHHHhcCCHHHHHHHHHhCCCCccccCCCCCCCCcchHHhh
Q 006831 546 WESVRDNDKKAVYRQIICSEPNVNAIHGQASYGKRLPLATV 586 (629)
Q Consensus 546 ~~av~~~d~~~~~~~l~~~gadvn~~~~~~~~~t~l~la~~ 586 (629)
..|..=++.+.+-++| ..|||||+..... -||||+|+-
T Consensus 135 hSAckWnN~~va~~LL-qhgaDVnA~t~g~--ltpLhlaa~ 172 (228)
T KOG0512|consen 135 HSACKWNNFEVAGRLL-QHGADVNAQTKGL--LTPLHLAAG 172 (228)
T ss_pred hhhhcccchhHHHHHH-hccCccccccccc--chhhHHhhc
Confidence 3455555555555444 7788888864332 488888753
No 152
>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.
Probab=79.87 E-value=2.9 Score=39.22 Aligned_cols=33 Identities=27% Similarity=0.412 Sum_probs=24.0
Q ss_pred cceEEEeeCC---cEEEEEeCCHHHHHHHHHHHHHH
Q 006831 280 RFCFRIISPT---KVYTLQAENTLDQMDWIEKINGV 312 (629)
Q Consensus 280 rfcF~Iit~~---rty~LqAeSe~E~~~WI~aI~~a 312 (629)
.|-|.|..-+ ..|+|.|+|+.++++|+++|..+
T Consensus 99 ~yp~~~~hlG~~~~~~TLyA~s~~~R~~W~e~I~~q 134 (135)
T PF15405_consen 99 LYPFTFRHLGRKGYSYTLYASSAQARQKWLEKIEEQ 134 (135)
T ss_dssp EEEEEE---GGG-EEEEEE-SSHHHHHHHHHHHHHH
T ss_pred ccCEEEEEcCCCceEEEEEeCCHHHHHHHHHHHHhc
Confidence 4667776554 36899999999999999999864
No 153
>PF10455 BAR_2: Bin/amphiphysin/Rvs domain for vesicular trafficking; InterPro: IPR018859 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. This entry identifies several fungal BAR domain proteins, such as Gvp36, that are not found by IPR004148 from INTERPRO [].
Probab=79.86 E-value=12 Score=39.49 Aligned_cols=89 Identities=17% Similarity=0.158 Sum_probs=64.6
Q ss_pred hhhhhHhHHHHHHHHHHhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 006831 8 VAFNGDGNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRFF 87 (629)
Q Consensus 8 ~~Fe~~q~kyd~~~~ky~slsk~k~~~~~~E~a~eL~~aRk~f~~asldyv~~l~~vq~kk~~e~le~l~~~~~a~~~ff 87 (629)
++.+..--.||.++.++-+.. +|+.-.+...+|..+-..|-.+.=+-|..|.+|-.. .+++..|..++.||+.||
T Consensus 199 kkV~~sRL~~D~~R~~~k~~~---~pekee~~r~~lE~aEDeFv~aTeeAv~~Mk~vl~~--~e~l~~Lk~lv~AQl~Yh 273 (289)
T PF10455_consen 199 KKVENSRLQFDAARANLKNKA---KPEKEEQLRVELEQAEDEFVSATEEAVEVMKEVLDN--SEPLRLLKELVKAQLEYH 273 (289)
T ss_pred HHHHHHHHHHHHHHHHhcccC---CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--cchHHHHHHHHHHHHHHH
Confidence 455666668888888876642 233333456667777778888877777777776543 468899999999999999
Q ss_pred hhhhHhhhhchHHH
Q 006831 88 KQGYELLHQMEPFI 101 (629)
Q Consensus 88 ~~g~e~~~~l~p~~ 101 (629)
..+++.+..+-+.+
T Consensus 274 k~aae~L~~~~~~l 287 (289)
T PF10455_consen 274 KKAAEALSELLKSL 287 (289)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999887765543
No 154
>PHA02884 ankyrin repeat protein; Provisional
Probab=79.52 E-value=2.4 Score=45.16 Aligned_cols=42 Identities=14% Similarity=0.143 Sum_probs=20.7
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCccccCCCCCCCCcchHHhhhh
Q 006831 545 LWESVRDNDKKAVYRQIICSEPNVNAIHGQASYGKRLPLATVME 588 (629)
Q Consensus 545 l~~av~~~d~~~~~~~l~~~gadvn~~~~~~~~~t~l~la~~~~ 588 (629)
|+.|++.++++.+ ++|+..|||||..... .+.||||+|...+
T Consensus 74 Lh~Aa~~~~~eiv-klLL~~GADVN~~~~~-~g~TpLh~Aa~~~ 115 (300)
T PHA02884 74 LIYAIDCDNDDAA-KLLIRYGADVNRYAEE-AKITPLYISVLHG 115 (300)
T ss_pred HHHHHHcCCHHHH-HHHHHcCCCcCcccCC-CCCCHHHHHHHcC
Confidence 4455555555433 3444556666643221 2456666665555
No 155
>cd07661 BAR_ICA69 The Bin/Amphiphysin/Rvs (BAR) domain of Islet Cell Autoantigen 69-kDa. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Islet cell autoantigen 69-kDa (ICA69) is a diabetes-associated autoantigen that is highly expressed in brain and beta cells. It is involved in membrane trafficking at the Golgi complex in neurosecretory cells. It is coexpressed with Protein Interacting with C Kinase 1 (PICK1), also a the BAR domain containing protein, in many tissues at different developmental stages. In neurons, ICA69 colocalizes with PICK1 in cell bodies and dendrites but is absent in synapses where PICK1 is enriched. ICA69 contains an N-terminal BAR domain and a conserved C-terminal domain of unknown function. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. ICA69 associate
Probab=79.33 E-value=18 Score=36.01 Aligned_cols=89 Identities=10% Similarity=0.098 Sum_probs=65.7
Q ss_pred hhhhhHhHHHHHHHHHHhcccC------CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 006831 8 VAFNGDGNFVLQAREKFLSLRK------STRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMD 81 (629)
Q Consensus 8 ~~Fe~~q~kyd~~~~ky~slsk------~k~~~~~~E~a~eL~~aRk~f~~asldyv~~l~~vq~kk~~e~le~l~~~~~ 81 (629)
+++|.+-..||.++.---.++. .+..+.++.+..++..+|..|.+-.+|.+.++..+.+.+.--|=..+..|=.
T Consensus 105 ~~~E~aR~EY~a~~~~mk~~s~eldP~~~~~l~kfr~aQ~qvr~~K~kfdkLk~Dv~qKvdlL~asR~n~ls~~L~~yqn 184 (204)
T cd07661 105 QRMEKCRTEYRAALLWMKSVSQELDPDTYKQLEKFRKAQAQVRSAKERFDKLKMDVCQKVDLLGASRCNLLSHALVTYQN 184 (204)
T ss_pred HHHHHhhcccHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788889999998887733332 2345556788899999999999999999999999999887444445555556
Q ss_pred HHHHHHhhhhHhhhh
Q 006831 82 AHLRFFKQGYELLHQ 96 (629)
Q Consensus 82 a~~~ff~~g~e~~~~ 96 (629)
+...||......+..
T Consensus 185 al~~y~~kt~~~~~~ 199 (204)
T cd07661 185 TLLQFWEKTSRTMAT 199 (204)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666777666555443
No 156
>KOG0248 consensus Cytoplasmic protein Max-1, contains PH, MyTH4 and FERM domains [Cytoskeleton]
Probab=78.17 E-value=0.92 Score=52.11 Aligned_cols=102 Identities=13% Similarity=-0.087 Sum_probs=62.5
Q ss_pred ccCCcceeEeeeeeeccCCCCCCceeEEEEEecCceEEEEeCCCCCCCcCCCcccccCCCCCCccccccccccccccCCC
Q 006831 172 VKGKVQTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGG 251 (629)
Q Consensus 172 ~~~~~~~iKqGyL~Krs~~~~k~WkRRwFvL~~~glLyYy~~~~~~~~g~~~~~~~~~~~~~~~g~g~l~~~~~~~~~g~ 251 (629)
+.+...+.+-|||.++...+ +.|++|||++.+ +.+-|++.+.+.+.+......
T Consensus 253 gy~~~~~s~~k~lkrr~~v~-k~gqi~~y~~~~-~~~~~p~s~~d~~s~~~~~~~------------------------- 305 (936)
T KOG0248|consen 253 GYWTQLTSRIKSLKRRYVVF-KNGQISFYRKHN-NRDEEPASKIDIRSVTKLEQQ------------------------- 305 (936)
T ss_pred cchhcchHHHHHHHhHheee-ccceEEEEEcCC-CccccccCcccccccceeecc-------------------------
Confidence 44455567889999997765 899999999985 445566666554332211100
Q ss_pred ccccccceeeEeecccceeecCCCCCCCcceEEEeeCCcEEEEEeCCHHHHHHHHHHHHHHHHHHhcc
Q 006831 252 VHDEKSVARHTVNLLTSTIKPDADQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVIASLLSF 319 (629)
Q Consensus 252 v~d~~~~~~~~i~l~~~~vk~~~d~~drrfcF~Iit~~rty~LqAeSe~E~~~WI~aI~~aI~~~l~~ 319 (629)
-......+.+.++ .+.| ...++.+-++...-+.+||.+.+..-...+.+
T Consensus 306 ------~~s~~fqli~~t~---------~~~~----~~~s~~lt~dw~~iL~~~iKv~~~~~~a~~~~ 354 (936)
T KOG0248|consen 306 ------GAAYAFQLITSTD---------KMNF----MTESERTTHDWVTILSAAIKATTLREMASRVT 354 (936)
T ss_pred ------chhHHhhhhhhce---------eEEE----eccChhhhhhhHHHHHHHHHHHhccchhhhcC
Confidence 0001111222111 2223 34578899999999999999998876554443
No 157
>PHA02741 hypothetical protein; Provisional
Probab=77.82 E-value=3.1 Score=39.81 Aligned_cols=43 Identities=14% Similarity=0.132 Sum_probs=22.4
Q ss_pred HHHHHhcCCH---HHHHHHHHhCCCCccccCCCCCCCCcchHHhhhh
Q 006831 545 LWESVRDNDK---KAVYRQIICSEPNVNAIHGQASYGKRLPLATVME 588 (629)
Q Consensus 545 l~~av~~~d~---~~~~~~l~~~gadvn~~~~~~~~~t~l~la~~~~ 588 (629)
|+-|+..+.. ..++++|+..|+|+|.... ..+.||||+|+.-+
T Consensus 64 Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~-~~g~TpLh~A~~~~ 109 (169)
T PHA02741 64 IHIAAEKHEAQLAAEIIDHLIELGADINAQEM-LEGDTALHLAAHRR 109 (169)
T ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCCCCc-CCCCCHHHHHHHcC
Confidence 4445555553 2445555556666665432 13456666665544
No 158
>PHA02730 ankyrin-like protein; Provisional
Probab=77.66 E-value=2.5 Score=49.58 Aligned_cols=43 Identities=9% Similarity=-0.036 Sum_probs=33.2
Q ss_pred HHHHHHhcCC--HHHHHHHHHhCCCCccccCCCCCCCCcchHHhhhh
Q 006831 544 QLWESVRDND--KKAVYRQIICSEPNVNAIHGQASYGKRLPLATVME 588 (629)
Q Consensus 544 ~l~~av~~~d--~~~~~~~l~~~gadvn~~~~~~~~~t~l~la~~~~ 588 (629)
.|+.|+..+. -..++++|+..|||+|+... .|.||||+|+.-+
T Consensus 44 aLh~A~~~~~~~~~eivklLLs~GAdin~kD~--~G~TPLh~Aa~~~ 88 (672)
T PHA02730 44 ALHCYVSNKCDTDIKIVRLLLSRGVERLCRNN--EGLTPLGVYSKRK 88 (672)
T ss_pred HHHHHHHcCCcCcHHHHHHHHhCCCCCcccCC--CCCChHHHHHHcC
Confidence 5788888764 25677888899999997643 5799999987644
No 159
>PHA02743 Viral ankyrin protein; Provisional
Probab=77.57 E-value=2.6 Score=40.38 Aligned_cols=30 Identities=13% Similarity=0.113 Sum_probs=12.7
Q ss_pred HHHHHhCCCCccccCCCCCCCCcchHHhhhh
Q 006831 558 YRQIICSEPNVNAIHGQASYGKRLPLATVME 588 (629)
Q Consensus 558 ~~~l~~~gadvn~~~~~~~~~t~l~la~~~~ 588 (629)
+++|+..|+|+|.... ..+.||||+|+..+
T Consensus 76 i~~Ll~~Gadin~~d~-~~g~TpLh~A~~~g 105 (166)
T PHA02743 76 IELLVNMGADINAREL-GTGNTLLHIAASTK 105 (166)
T ss_pred HHHHHHcCCCCCCCCC-CCCCcHHHHHHHhC
Confidence 3344444555554321 12345555554433
No 160
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=77.43 E-value=14 Score=36.73 Aligned_cols=61 Identities=15% Similarity=0.287 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhHhhhhchH
Q 006831 39 IEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRFFKQGYELLHQMEP 99 (629)
Q Consensus 39 ~a~eL~~aRk~f~~asldyv~~l~~vq~kk~~e~le~l~~~~~a~~~ff~~g~e~~~~l~p 99 (629)
...++..++..|+.++=++...+...+.-|..+|-..+.+|...|..|+.+..+..+.+-|
T Consensus 139 l~~ev~~a~~~~e~~~~~~~~E~~rF~~~K~~d~k~~l~~~a~~qi~~~~~~~~~We~~~p 199 (200)
T cd07624 139 LLKEVEKLQDKLECANADLKADLERWKQNKRQDLKKILLDMAEKQIQYYEQCLAAWEEVLP 199 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 6677888999999999999999999999999999999999999999999998776665543
No 161
>PHA02878 ankyrin repeat protein; Provisional
Probab=77.24 E-value=2.7 Score=47.18 Aligned_cols=41 Identities=17% Similarity=0.118 Sum_probs=33.5
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCccccCCCCCCCCcchHHhhhh
Q 006831 545 LWESVRDNDKKAVYRQIICSEPNVNAIHGQASYGKRLPLATVME 588 (629)
Q Consensus 545 l~~av~~~d~~~~~~~l~~~gadvn~~~~~~~~~t~l~la~~~~ 588 (629)
|+.||..++++.+- .|+..|+|||.... .+.||||+|+..+
T Consensus 41 Lh~A~~~g~~e~vk-~Ll~~gadvn~~d~--~g~TpLh~A~~~g 81 (477)
T PHA02878 41 LHQAVEARNLDVVK-SLLTRGHNVNQPDH--RDLTPLHIICKEP 81 (477)
T ss_pred HHHHHHcCCHHHHH-HHHHCCCCCCCCCC--CCCCHHHHHHHCc
Confidence 77899999998775 55588999998644 5789999999765
No 162
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=76.96 E-value=3.7 Score=34.39 Aligned_cols=38 Identities=11% Similarity=0.031 Sum_probs=31.0
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCccccCCCCCCCCcchHHhhhhh
Q 006831 545 LWESVRDNDKKAVYRQIICSEPNVNAIHGQASYGKRLPLATVMEM 589 (629)
Q Consensus 545 l~~av~~~d~~~~~~~l~~~gadvn~~~~~~~~~t~l~la~~~~~ 589 (629)
|+.|++.+++..+-.+ +..|++++. +.||||.|+..++
T Consensus 1 L~~A~~~~~~~~~~~l-l~~~~~~~~------~~~~l~~A~~~~~ 38 (89)
T PF12796_consen 1 LHIAAQNGNLEILKFL-LEKGADINL------GNTALHYAAENGN 38 (89)
T ss_dssp HHHHHHTTTHHHHHHH-HHTTSTTTS------SSBHHHHHHHTTT
T ss_pred CHHHHHcCCHHHHHHH-HHCcCCCCC------CCCHHHHHHHcCC
Confidence 5679999998877655 478998887 6799999998884
No 163
>cd07659 BAR_PICK1 The Bin/Amphiphysin/Rvs (BAR) domain of Protein Interacting with C Kinase 1. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Protein Interacting with C Kinase 1 (PICK1), also called Protein kinase C-alpha-binding protein, is highly expressed in brain and testes. PICK1 plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. PICK1 is also critical in the early stages of spermiogenesis. Mice deficient in PICK1 are infertile and show characteristics of the human disease globozoospermia such as round-headed sperm, reduced sperm count, and severely impaired sperm motility. PICK1 may also be involved in the neuropathogenesis of schizophrenia. PICK1 contains an N-terminal PDZ domain and a C-terminal BAR domain. BAR domains form dimers th
Probab=75.31 E-value=29 Score=34.94 Aligned_cols=52 Identities=19% Similarity=0.284 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhHhhh
Q 006831 44 HNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRFFKQGYELLH 95 (629)
Q Consensus 44 ~~aRk~f~~asldyv~~l~~vq~kk~~e~le~l~~~~~a~~~ff~~g~e~~~ 95 (629)
..+|..|.+-+=|..++|..++.++--.++..+.-|..|...||..+++.+.
T Consensus 157 q~~r~kf~kLR~DV~vKlelLe~k~vk~i~~QL~~f~~aisay~~~~~~~~~ 208 (215)
T cd07659 157 QEARARFAKLRQDVLEKLELLDQKHVQDIVFQLQRFVSALSEYHSDCHELLK 208 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6899999999999999999999999888999999999999999999998875
No 164
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=74.81 E-value=1.5 Score=34.26 Aligned_cols=25 Identities=20% Similarity=0.058 Sum_probs=11.6
Q ss_pred HhCC-CCccccCCCCCCCCcchHHhhhh
Q 006831 562 ICSE-PNVNAIHGQASYGKRLPLATVME 588 (629)
Q Consensus 562 ~~~g-advn~~~~~~~~~t~l~la~~~~ 588 (629)
+..| +|+|.... .+.||||+|+..+
T Consensus 2 L~~~~~~~n~~d~--~G~T~LH~A~~~g 27 (56)
T PF13857_consen 2 LEHGPADVNAQDK--YGNTPLHWAARYG 27 (56)
T ss_dssp ----T--TT---T--TS--HHHHHHHHT
T ss_pred CccCcCCCcCcCC--CCCcHHHHHHHcC
Confidence 3456 88887654 4689999999977
No 165
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=74.80 E-value=2.5 Score=44.19 Aligned_cols=44 Identities=14% Similarity=0.232 Sum_probs=31.5
Q ss_pred HHHhcCCHHHHHHHHHhCCCCccccCCCCCCCCcchHHhhhhhhhccc
Q 006831 547 ESVRDNDKKAVYRQIICSEPNVNAIHGQASYGKRLPLATVMEMEEHER 594 (629)
Q Consensus 547 ~av~~~d~~~~~~~l~~~gadvn~~~~~~~~~t~l~la~~~~~~~~~~ 594 (629)
-|...+.-.-| +.|+...+|||+++++ |+||||.||--++ +|..
T Consensus 73 laaahghrdiv-qkll~~kadvnavneh--gntplhyacfwgy-dqia 116 (448)
T KOG0195|consen 73 LAAAHGHRDIV-QKLLSRKADVNAVNEH--GNTPLHYACFWGY-DQIA 116 (448)
T ss_pred hhhhcccHHHH-HHHHHHhcccchhhcc--CCCchhhhhhhcH-HHHH
Confidence 34444444434 4556889999999875 6899999999996 5544
No 166
>KOG3523 consensus Putative guanine nucleotide exchange factor TIM [Signal transduction mechanisms]
Probab=74.68 E-value=29 Score=39.98 Aligned_cols=34 Identities=24% Similarity=0.309 Sum_probs=26.6
Q ss_pred CCCcceEEEeeC----C--cEEEEEeCCHHHHHHHHHHHH
Q 006831 277 SDLRFCFRIISP----T--KVYTLQAENTLDQMDWIEKIN 310 (629)
Q Consensus 277 ~drrfcF~Iit~----~--rty~LqAeSe~E~~~WI~aI~ 310 (629)
..+++.|.+.-- + -.|+|+|+|+.|+..||.|+.
T Consensus 552 ~~~~hlF~ltLl~N~~~~~~e~lL~a~s~Sd~~RWi~Al~ 591 (695)
T KOG3523|consen 552 SSRPHLFLLTLLSNHQGRQTELLLSAESQSDRQRWISALR 591 (695)
T ss_pred ccccceEEEehhhccCCCceeeeecCCchHHHHHHHHhcC
Confidence 355678887732 2 379999999999999998774
No 167
>cd05135 RasGAP_RASAL Ras GTPase activating-like protein (RASAL) or RASAL1 is a member of the GAP1 family, and a Ca2+ sensor responding in-phase to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. It contains a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. RASAL, like Ca2+ -promoted Ras inactivator (CAPRI, or RASAL4), is a cytosolic protein that undergoes a rapid translocation to the plasma membrane in response to receptor-mediated elevation in the concentration of intracellular free Ca2+, a translocation that activates its ability to function as a RasGAP. However, unlike RASAL4, RASAL undergoes an oscillatory translocation to the plasma membrane that occurs in synchrony with repetitive Ca2+ spikes.
Probab=73.12 E-value=4.4 Score=43.80 Aligned_cols=27 Identities=44% Similarity=0.822 Sum_probs=20.5
Q ss_pred ceeEeeeeeeccCC-----CCCCceeEEEEEe
Q 006831 177 QTIKQGYLSKRSSN-----LRADWKRRFFVLD 203 (629)
Q Consensus 177 ~~iKqGyL~Krs~~-----~~k~WkRRwFvL~ 203 (629)
.++|+|++.||... .+..||+|||.|.
T Consensus 302 ~~~~eg~~~~r~~~~~~~~~~~~fkk~~f~l~ 333 (333)
T cd05135 302 VTVKEGYLHKRKTEGPQLLTRFAFKKRYFWLS 333 (333)
T ss_pred chhhhhHhhhccccCCCCcccccccceeeecC
Confidence 46899999998742 2336999999873
No 168
>PHA02875 ankyrin repeat protein; Provisional
Probab=73.11 E-value=4.2 Score=44.46 Aligned_cols=42 Identities=12% Similarity=-0.039 Sum_probs=24.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCccccCCCCCCCCcchHHhhhh
Q 006831 544 QLWESVRDNDKKAVYRQIICSEPNVNAIHGQASYGKRLPLATVME 588 (629)
Q Consensus 544 ~l~~av~~~d~~~~~~~l~~~gadvn~~~~~~~~~t~l~la~~~~ 588 (629)
.|+.|+..++++.+- .|+..|+|+|.... .+.||||+|+..+
T Consensus 5 ~L~~A~~~g~~~iv~-~Ll~~g~~~n~~~~--~g~tpL~~A~~~~ 46 (413)
T PHA02875 5 ALCDAILFGELDIAR-RLLDIGINPNFEIY--DGISPIKLAMKFR 46 (413)
T ss_pred HHHHHHHhCCHHHHH-HHHHCCCCCCccCC--CCCCHHHHHHHcC
Confidence 466666666665543 33456666665422 3566776666554
No 169
>PHA02736 Viral ankyrin protein; Provisional
Probab=72.34 E-value=2.3 Score=39.89 Aligned_cols=41 Identities=7% Similarity=0.031 Sum_probs=21.6
Q ss_pred HHHhcCCHH--HHHHHHHhCCCCccccCCCCCCCCcchHHhhhh
Q 006831 547 ESVRDNDKK--AVYRQIICSEPNVNAIHGQASYGKRLPLATVME 588 (629)
Q Consensus 547 ~av~~~d~~--~~~~~l~~~gadvn~~~~~~~~~t~l~la~~~~ 588 (629)
.|+..+.+. .++.+|+..|+|+|.... ..+.||||+|+..+
T Consensus 61 ~a~~~~~~~~~e~v~~Ll~~gadin~~~~-~~g~T~Lh~A~~~~ 103 (154)
T PHA02736 61 IVSNPDKADPQEKLKLLMEWGADINGKER-VFGNTPLHIAVYTQ 103 (154)
T ss_pred eecccCchhHHHHHHHHHHcCCCccccCC-CCCCcHHHHHHHhC
Confidence 344444432 344555566777665421 13567777766555
No 170
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=71.64 E-value=38 Score=33.18 Aligned_cols=89 Identities=12% Similarity=0.131 Sum_probs=60.7
Q ss_pred hhhHhHHHHHHHHHHhcccCCC--Ccch-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 006831 10 FNGDGNFVLQAREKFLSLRKST--RMDV-------AVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTM 80 (629)
Q Consensus 10 Fe~~q~kyd~~~~ky~slsk~k--~~~~-------~~E~a~eL~~aRk~f~~asldyv~~l~~vq~kk~~e~le~l~~~~ 80 (629)
++.++.......++..++..+. ++.. +.+.+.++..++..|...+-.....+..++..+..+|-..+..|.
T Consensus 119 ~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i~~~~~~El~~f~~~~~~dlk~~l~~~~ 198 (218)
T cd07596 119 LQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEISERLKEELKRFHEERARDLKAALKEFA 198 (218)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555554444443322 2232 245555666777777777777777888888888888999999999
Q ss_pred HHHHHHHhhhhHhhhhch
Q 006831 81 DAHLRFFKQGYELLHQME 98 (629)
Q Consensus 81 ~a~~~ff~~g~e~~~~l~ 98 (629)
..+..|++...+++..+.
T Consensus 199 ~~qi~~~~~~~~~W~~~~ 216 (218)
T cd07596 199 RLQVQYAEKIAEAWESLL 216 (218)
T ss_pred HHHHHHHHHHHHHHHhhC
Confidence 999999999888776654
No 171
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=71.44 E-value=3.4 Score=47.32 Aligned_cols=43 Identities=28% Similarity=0.187 Sum_probs=33.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCccccCCCCCCCCcchHHhhhh
Q 006831 544 QLWESVRDNDKKAVYRQIICSEPNVNAIHGQASYGKRLPLATVME 588 (629)
Q Consensus 544 ~l~~av~~~d~~~~~~~l~~~gadvn~~~~~~~~~t~l~la~~~~ 588 (629)
.|++|.-.|.+. +.|.|+..|||||.+.|. .+.||||-|++-+
T Consensus 81 lLHWAAiNNrl~-v~r~li~~gadvn~~gG~-l~stPLHWAar~G 123 (600)
T KOG0509|consen 81 LLHWAAINNRLD-VARYLISHGADVNAIGGV-LGSTPLHWAARNG 123 (600)
T ss_pred ceeHHHHcCcHH-HHHHHHHcCCCccccCCC-CCCCcchHHHHcC
Confidence 466776666655 566777999999999884 5799999998766
No 172
>PHA03095 ankyrin-like protein; Provisional
Probab=71.22 E-value=4.7 Score=44.70 Aligned_cols=41 Identities=17% Similarity=0.073 Sum_probs=27.3
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCccccCCCCCCCCcchHHhh
Q 006831 544 QLWESVRDNDKKAVYRQIICSEPNVNAIHGQASYGKRLPLATV 586 (629)
Q Consensus 544 ~l~~av~~~d~~~~~~~l~~~gadvn~~~~~~~~~t~l~la~~ 586 (629)
-|+.|+..++...++++|+..|+|+|.... .+.||||+|+.
T Consensus 86 pLh~A~~~~~~~~iv~lLl~~ga~in~~~~--~g~tpLh~a~~ 126 (471)
T PHA03095 86 PLHLYLYNATTLDVIKLLIKAGADVNAKDK--VGRTPLHVYLS 126 (471)
T ss_pred HHHHHHHcCCcHHHHHHHHHcCCCCCCCCC--CCCCHHHHHhh
Confidence 456677777655566666777888777544 35688887773
No 173
>PHA02736 Viral ankyrin protein; Provisional
Probab=71.04 E-value=5.7 Score=37.12 Aligned_cols=43 Identities=9% Similarity=-0.017 Sum_probs=31.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCccccCCCCCCCCcchHHhhhh
Q 006831 544 QLWESVRDNDKKAVYRQIICSEPNVNAIHGQASYGKRLPLATVME 588 (629)
Q Consensus 544 ~l~~av~~~d~~~~~~~l~~~gadvn~~~~~~~~~t~l~la~~~~ 588 (629)
.|..|+..+..+.+..+|-..|+|+|.... .+.||||+|+..+
T Consensus 95 ~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~--~g~tpL~~A~~~~ 137 (154)
T PHA02736 95 PLHIAVYTQNYELATWLCNQPGVNMEILNY--AFKTPYYVACERH 137 (154)
T ss_pred HHHHHHHhCCHHHHHHHHhCCCCCCccccC--CCCCHHHHHHHcC
Confidence 367788888887665444236999998654 4689999999876
No 174
>PHA02743 Viral ankyrin protein; Provisional
Probab=70.56 E-value=4.5 Score=38.75 Aligned_cols=43 Identities=7% Similarity=-0.057 Sum_probs=32.6
Q ss_pred HHHHHHhcCCHHH---HHHHHHhCCCCccccCCCCCCCCcchHHhhhh
Q 006831 544 QLWESVRDNDKKA---VYRQIICSEPNVNAIHGQASYGKRLPLATVME 588 (629)
Q Consensus 544 ~l~~av~~~d~~~---~~~~l~~~gadvn~~~~~~~~~t~l~la~~~~ 588 (629)
.|+.|++.+++.. ++..|...|+++|.... .+.||||+|+..+
T Consensus 23 ~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~--~g~t~Lh~Aa~~g 68 (166)
T PHA02743 23 TFLRICRTGNIYELMEVAPFISGDGHLLHRYDH--HGRQCTHMVAWYD 68 (166)
T ss_pred HHHHHHHcCCHHHHHHHHHHHhhcchhhhccCC--CCCcHHHHHHHhC
Confidence 4777999999864 44456678999886544 4789999999765
No 175
>PHA02795 ankyrin-like protein; Provisional
Probab=69.20 E-value=5.7 Score=44.47 Aligned_cols=42 Identities=19% Similarity=0.127 Sum_probs=33.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCccccCCCCCCCCcchHHhhhh
Q 006831 544 QLWESVRDNDKKAVYRQIICSEPNVNAIHGQASYGKRLPLATVME 588 (629)
Q Consensus 544 ~l~~av~~~d~~~~~~~l~~~gadvn~~~~~~~~~t~l~la~~~~ 588 (629)
.|+.|+..++.+.+ ++|+..|||||.... .|.||||+|+.-+
T Consensus 224 pLh~Aa~~g~~eiV-elLL~~GAdIN~~d~--~G~TpLh~Aa~~g 265 (437)
T PHA02795 224 LLYRAIYAGYIDLV-SWLLENGANVNAVMS--NGYTCLDVAVDRG 265 (437)
T ss_pred HHHHHHHcCCHHHH-HHHHHCCCCCCCcCC--CCCCHHHHHHHcC
Confidence 57889998888765 466689999999765 4799999998765
No 176
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=68.87 E-value=51 Score=33.04 Aligned_cols=91 Identities=16% Similarity=0.265 Sum_probs=65.1
Q ss_pred hhhhHhHHHHHHHHHHhcccCC--CCcchHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 006831 9 AFNGDGNFVLQAREKFLSLRKS--TRMDVAVVIEED-------LHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGT 79 (629)
Q Consensus 9 ~Fe~~q~kyd~~~~ky~slsk~--k~~~~~~E~a~e-------L~~aRk~f~~asldyv~~l~~vq~kk~~e~le~l~~~ 79 (629)
.++.++...+...+++-.+..+ .+++.+..+..+ +..+++.|...+=..-..+...+..|..+|-..+..|
T Consensus 136 ~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~~k~~d~k~~l~~~ 215 (236)
T PF09325_consen 136 EYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEISENIKKELERFEKEKVKDFKSMLEEY 215 (236)
T ss_pred HHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777666655 233444444444 4556666666666666788888888888999999999
Q ss_pred HHHHHHHHhhhhHhhhhchH
Q 006831 80 MDAHLRFFKQGYELLHQMEP 99 (629)
Q Consensus 80 ~~a~~~ff~~g~e~~~~l~p 99 (629)
+..+..|.++..+.++.+-|
T Consensus 216 ~~~~i~~~~~~~~~We~~~~ 235 (236)
T PF09325_consen 216 AESQIEYQKKMLEAWETFLP 235 (236)
T ss_pred HHHHHHHHHHHHHHHHhHcc
Confidence 99999999998887766543
No 177
>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=68.43 E-value=46 Score=32.80 Aligned_cols=61 Identities=21% Similarity=0.418 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhHhhhhchH
Q 006831 39 IEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRFFKQGYELLHQMEP 99 (629)
Q Consensus 39 ~a~eL~~aRk~f~~asldyv~~l~~vq~kk~~e~le~l~~~~~a~~~ff~~g~e~~~~l~p 99 (629)
...++..++..|....=+....+...+.-|..+|-+.+.+|-..|..||....+....+.|
T Consensus 124 l~~~ve~a~~~~e~f~~~~~~E~~rF~~~k~~elk~~l~~~a~~qi~~y~~~~~~W~~~~~ 184 (185)
T cd07628 124 LTDEVENAKETSDAFNKEVLKEYPNFERIKKQEIKDSLGALADGHIDFYQGLVEDWEKVEP 184 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3456788888998888888889999999999999999999999999999998777665543
No 178
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=67.72 E-value=6.6 Score=44.76 Aligned_cols=56 Identities=18% Similarity=0.323 Sum_probs=41.4
Q ss_pred eeEeecccceeecC--CCCCCCcceEEEeeCCcEEEEEeCCHHHHHHHHHHHHHHHHH
Q 006831 260 RHTVNLLTSTIKPD--ADQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVIAS 315 (629)
Q Consensus 260 ~~~i~l~~~~vk~~--~d~~drrfcF~Iit~~rty~LqAeSe~E~~~WI~aI~~aI~~ 315 (629)
..+|.+..|.+.+. ....|+.+.|.++-....|+|.|++++-.+.|++.|.-|...
T Consensus 540 ~~~iPl~~~~v~~pe~~~~~D~~~~~k~~~s~~~~~~~a~~~q~qq~wl~~l~~A~~~ 597 (623)
T KOG4424|consen 540 QATIPLPGVEVTIPEFVRREDLFHVFKLVQSHLSWHLAADDEQLQQRWLEVLLLAVSG 597 (623)
T ss_pred ccccccCccccCCCcccccchhcchhhhhhhcceeeeccCCHHHHHHHHHHHHhhhcc
Confidence 35566777776642 123355677777777789999999999999999998876543
No 179
>KOG3551 consensus Syntrophins (type beta) [Extracellular structures]
Probab=67.24 E-value=4.5 Score=43.89 Aligned_cols=38 Identities=29% Similarity=0.645 Sum_probs=28.8
Q ss_pred eeEeeeeeeccCC-CCCCceeEEEEEecCceEEEEeCCC
Q 006831 178 TIKQGYLSKRSSN-LRADWKRRFFVLDSRGLLYYYRKPW 215 (629)
Q Consensus 178 ~iKqGyL~Krs~~-~~k~WkRRwFvL~~~glLyYy~~~~ 215 (629)
+..=|||.+|-+. ..+.|+..+.+|+...+|.|-.-+.
T Consensus 292 vkHiGWLaeq~~~~G~~~w~P~l~~lTekelliYes~P~ 330 (506)
T KOG3551|consen 292 VKHIGWLAEQVSGGGISQWKPKLMALTEKELLIYESMPW 330 (506)
T ss_pred hhhhhhHHhhccCCChhhhhhheeeechhhhhhhhcChh
Confidence 3445999988544 4567999999999888888875554
No 180
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=67.03 E-value=4.9 Score=49.71 Aligned_cols=42 Identities=19% Similarity=-0.005 Sum_probs=36.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCccccCCCCCCCCcchHHhhhh
Q 006831 544 QLWESVRDNDKKAVYRQIICSEPNVNAIHGQASYGKRLPLATVME 588 (629)
Q Consensus 544 ~l~~av~~~d~~~~~~~l~~~gadvn~~~~~~~~~t~l~la~~~~ 588 (629)
-|+.|+..+++..|-.+ +-.|||||+-. ..+.||||.|+.++
T Consensus 543 pLh~A~~~g~v~~VkfL-Le~gAdv~ak~--~~G~TPLH~Aa~~G 584 (1143)
T KOG4177|consen 543 PLHVAVHYGNVDLVKFL-LEHGADVNAKD--KLGYTPLHQAAQQG 584 (1143)
T ss_pred hHHHHHhcCCchHHHHh-hhCCccccccC--CCCCChhhHHHHcC
Confidence 57889999999987654 58999999975 57899999999999
No 181
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=66.64 E-value=0.094 Score=56.16 Aligned_cols=52 Identities=23% Similarity=0.346 Sum_probs=40.2
Q ss_pred eEeecccceeecCCCCCCCcceEEEeeCCcEEEEEeCCHHHHHHHHHHHHHHH
Q 006831 261 HTVNLLTSTIKPDADQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVI 313 (629)
Q Consensus 261 ~~i~l~~~~vk~~~d~~drrfcF~Iit~~rty~LqAeSe~E~~~WI~aI~~aI 313 (629)
+.++|..|+--. .-...+.|.|.|.+.+..|+|.|-+..-+..||.|++...
T Consensus 63 ~~~~LR~C~~v~-e~a~q~nY~~~i~~~~~~~tL~~~~s~Ir~~~~~A~~kT~ 114 (593)
T KOG4807|consen 63 GEIDLRSCTDVT-EYAVQRNYGFQIHTKDAVYTLSAMTSGIRRNWIEALRKTV 114 (593)
T ss_pred ccccHHHHHHHH-HHHHHhccceeecccchhhhhHHHHHHHHHHHHHHHHhcc
Confidence 456677665322 1223568999999999999999999999999999998544
No 182
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and
Probab=66.32 E-value=66 Score=32.20 Aligned_cols=62 Identities=13% Similarity=0.170 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhHhhhhch
Q 006831 37 VVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRFFKQGYELLHQME 98 (629)
Q Consensus 37 ~E~a~eL~~aRk~f~~asldyv~~l~~vq~kk~~e~le~l~~~~~a~~~ff~~g~e~~~~l~ 98 (629)
.+...++..++..+....=+....+...+..|..+|-+.+.+|-..|..||..+.+....+.
T Consensus 136 ~~l~~~ve~a~~~~e~f~~~~~~E~~rF~~~K~~dlk~~l~~~A~~qi~~~~~~~~~W~~~~ 197 (201)
T cd07622 136 QQGEEAVKEAKDELNEFVKKALEDVERFKKQKVRDLKEILISYAKLQIKLAKKGLQTWTNIK 197 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45888899999999988888899999999999999999999999999999999877665543
No 183
>PHA03095 ankyrin-like protein; Provisional
Probab=65.03 E-value=6.8 Score=43.46 Aligned_cols=43 Identities=16% Similarity=0.079 Sum_probs=29.8
Q ss_pred HHHHHHhcCC-HHHHHHHHHhCCCCccccCCCCCCCCcchHHhhhh
Q 006831 544 QLWESVRDND-KKAVYRQIICSEPNVNAIHGQASYGKRLPLATVME 588 (629)
Q Consensus 544 ~l~~av~~~d-~~~~~~~l~~~gadvn~~~~~~~~~t~l~la~~~~ 588 (629)
.|+.|+.... -..++++|+..|+|+|.... .+.||||+|....
T Consensus 120 pLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~--~g~tpL~~a~~~~ 163 (471)
T PHA03095 120 PLHVYLSGFNINPKVIRLLLRKGADVNALDL--YGMTPLAVLLKSR 163 (471)
T ss_pred HHHHHhhCCcCCHHHHHHHHHcCCCCCccCC--CCCCHHHHHHHcC
Confidence 4566664332 24466677789999998654 4689999997755
No 184
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=64.69 E-value=77 Score=32.02 Aligned_cols=59 Identities=15% Similarity=0.188 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhHhh
Q 006831 36 AVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRFFKQGYELL 94 (629)
Q Consensus 36 ~~E~a~eL~~aRk~f~~asldyv~~l~~vq~kk~~e~le~l~~~~~a~~~ff~~g~e~~ 94 (629)
+.+.+.+|..++..|...+-.+--.|...+..|--+|=..+..|+.++..|..+..+++
T Consensus 137 i~eaE~~l~~a~~d~~r~s~~l~ee~~rFe~~k~~d~K~~l~~fv~~~m~~~~kale~~ 195 (211)
T cd07598 137 ISQAESELQKASVDANRSTKELEEQMDNFEKQKIRDIKTIFSDFVLIEMLFHAKALEVY 195 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34789999999999999999999999999988887888888899999999988876544
No 185
>PHA02875 ankyrin repeat protein; Provisional
Probab=64.66 E-value=7.9 Score=42.31 Aligned_cols=43 Identities=16% Similarity=0.040 Sum_probs=32.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCccccCCCCCCCCcchHHhhhhh
Q 006831 544 QLWESVRDNDKKAVYRQIICSEPNVNAIHGQASYGKRLPLATVMEM 589 (629)
Q Consensus 544 ~l~~av~~~d~~~~~~~l~~~gadvn~~~~~~~~~t~l~la~~~~~ 589 (629)
-|+.|+..++.+.+ ++|+..|+++|.... .+.||||+|+..+.
T Consensus 138 pLh~A~~~~~~~~v-~~Ll~~g~~~~~~d~--~g~TpL~~A~~~g~ 180 (413)
T PHA02875 138 PLHLAVMMGDIKGI-ELLIDHKACLDIEDC--CGCTPLIIAMAKGD 180 (413)
T ss_pred HHHHHHHcCCHHHH-HHHHhcCCCCCCCCC--CCCCHHHHHHHcCC
Confidence 57788888887765 455678998887643 46899999988873
No 186
>PHA02884 ankyrin repeat protein; Provisional
Probab=64.32 E-value=8.6 Score=40.94 Aligned_cols=43 Identities=16% Similarity=0.177 Sum_probs=32.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCccccCCCCCCCCcchHHhhhh
Q 006831 543 QQLWESVRDNDKKAVYRQIICSEPNVNAIHGQASYGKRLPLATVME 588 (629)
Q Consensus 543 ~~l~~av~~~d~~~~~~~l~~~gadvn~~~~~~~~~t~l~la~~~~ 588 (629)
.-|+.|+..++.+.+ .+|+..|||+|.... .+.||||+|+..+
T Consensus 106 TpLh~Aa~~~~~eiv-klLL~~GAdin~kd~--~G~TpL~~A~~~~ 148 (300)
T PHA02884 106 TPLYISVLHGCLKCL-EILLSYGADINIQTN--DMVTPIELALMIC 148 (300)
T ss_pred CHHHHHHHcCCHHHH-HHHHHCCCCCCCCCC--CCCCHHHHHHHhC
Confidence 357778888877654 566688999998654 4689999998866
No 187
>PHA02791 ankyrin-like protein; Provisional
Probab=64.12 E-value=8.7 Score=40.51 Aligned_cols=41 Identities=17% Similarity=0.114 Sum_probs=17.4
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCccccCCCCCCCCcchHHhhhh
Q 006831 545 LWESVRDNDKKAVYRQIICSEPNVNAIHGQASYGKRLPLATVME 588 (629)
Q Consensus 545 l~~av~~~d~~~~~~~l~~~gadvn~~~~~~~~~t~l~la~~~~ 588 (629)
|+.|+..++.+.+ ++|+..|+|+|.... .+.||||+|+..+
T Consensus 65 Lh~Aa~~g~~eiV-~lLL~~Gadvn~~d~--~G~TpLh~Aa~~g 105 (284)
T PHA02791 65 LHQAATLEDTKIV-KILLFSGMDDSQFDD--KGNTALYYAVDSG 105 (284)
T ss_pred HHHHHHCCCHHHH-HHHHHCCCCCCCCCC--CCCCHHHHHHHcC
Confidence 3344444443332 233344555544322 2345555554444
No 188
>cd05134 RasGAP_RASA3 RASA3 (or GAP1_IP4BP) is a member of the GAP1 family and has been shown to specifically bind 1,3,4,5-tetrakisphosphate (IP4). Thus, RASA3 may function as an IP4 receptor. The members of GAP1 family are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. Purified RASA3 stimulates GAP activity on Ras with about a five-fold lower potency than p120RasGAP, but shows no GAP-stimulating activity at all against Rac or Rab3A.
Probab=63.84 E-value=2.2 Score=45.60 Aligned_cols=27 Identities=30% Similarity=0.609 Sum_probs=21.2
Q ss_pred ceeEeeeeeeccCC----CCCCceeEEEEEe
Q 006831 177 QTIKQGYLSKRSSN----LRADWKRRFFVLD 203 (629)
Q Consensus 177 ~~iKqGyL~Krs~~----~~k~WkRRwFvL~ 203 (629)
.++|+|+|.||..+ .++.||||||.|.
T Consensus 279 ~~~~~~~~~~r~~~~~~~~~~~~k~r~~~lt 309 (310)
T cd05134 279 ILLKEGFMIKRAQGRKRFGMKNFKKRWFRLT 309 (310)
T ss_pred chhhhhhHHHhcccCCcccccchhheeeecC
Confidence 56899999986433 3468999999986
No 189
>PRK12495 hypothetical protein; Provisional
Probab=63.57 E-value=4.3 Score=40.89 Aligned_cols=35 Identities=26% Similarity=0.491 Sum_probs=26.8
Q ss_pred HHHHHh--ccCCCCCCCCCCCCCCceecccceeEecccccc
Q 006831 394 IDLLRR--VYGNNKCADCGASEPDWASLNLGVLICIQCSGV 432 (629)
Q Consensus 394 ~~~l~~--~p~N~~CaDCg~~~p~w~s~n~Gv~lC~~Csgv 432 (629)
.+.|++ .+.+..|.+||.+-|. + -|+.+|..|..+
T Consensus 31 a~lL~~gatmsa~hC~~CG~PIpa---~-pG~~~Cp~CQ~~ 67 (226)
T PRK12495 31 SELLLQGATMTNAHCDECGDPIFR---H-DGQEFCPTCQQP 67 (226)
T ss_pred HHHHHhhcccchhhcccccCcccC---C-CCeeECCCCCCc
Confidence 344443 3579999999999983 2 599999999865
No 190
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=63.43 E-value=5.7 Score=45.12 Aligned_cols=36 Identities=25% Similarity=0.381 Sum_probs=25.7
Q ss_pred CCcceEEEeeCCcEEEEEeCC------------HHHHHHHHHHHHHHHH
Q 006831 278 DLRFCFRIISPTKVYTLQAEN------------TLDQMDWIEKINGVIA 314 (629)
Q Consensus 278 drrfcF~Iit~~rty~LqAeS------------e~E~~~WI~aI~~aI~ 314 (629)
..++||+|+|..-+ +|--++ ..-.+.|-.||+.+..
T Consensus 477 ~~phcFEI~T~~~v-yfVge~p~~~~~~~~g~g~d~a~~w~~ai~~alM 524 (888)
T KOG4236|consen 477 TNPHCFEIRTATTV-YFVGENPSSTPGGESGVGLDAAQGWETAIQQALM 524 (888)
T ss_pred CCCceEEEEeeeEE-EEecCCCCCCccccccccchhhccCchhhhhccc
Confidence 45899999999844 455555 4448889888876643
No 191
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=63.16 E-value=79 Score=32.06 Aligned_cols=89 Identities=13% Similarity=0.164 Sum_probs=59.5
Q ss_pred hhHhHHHHHHHHHHhcccCCCCcchHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 006831 11 NGDGNFVLQAREKFLSLRKSTRMDVAVVIEEDL-------HNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAH 83 (629)
Q Consensus 11 e~~q~kyd~~~~ky~slsk~k~~~~~~E~a~eL-------~~aRk~f~~asldyv~~l~~vq~kk~~e~le~l~~~~~a~ 83 (629)
..++......+++...+....+++.+.++..++ ..+++.|...+-..-..|..++..+-.+|-..+..|+..+
T Consensus 126 q~a~~~l~kkr~~~~Kl~~~~~~~K~~~~~~ev~~~e~~~~~a~~~fe~is~~~k~El~rF~~erv~dfk~~l~~~le~~ 205 (224)
T cd07623 126 QNAQQTLTKKREAKAKLELSGRTDKLDQAQQEIKEWEAKVDRGQKEFEEISKTIKKEIERFEKNRVKDFKDIIIKYLESL 205 (224)
T ss_pred HHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555554444445554444444 4566666666655566888888888889999999999999
Q ss_pred HHHHhhhhHhhhhchH
Q 006831 84 LRFFKQGYELLHQMEP 99 (629)
Q Consensus 84 ~~ff~~g~e~~~~l~p 99 (629)
..|.++-.++++.+-|
T Consensus 206 i~~q~~~~~~We~~~p 221 (224)
T cd07623 206 LNTQQQLIKYWEAFLP 221 (224)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9988888777666554
No 192
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=62.99 E-value=8.1 Score=46.75 Aligned_cols=43 Identities=19% Similarity=0.211 Sum_probs=31.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCccccCCCCCCCCcchHHhhhh
Q 006831 543 QQLWESVRDNDKKAVYRQIICSEPNVNAIHGQASYGKRLPLATVME 588 (629)
Q Consensus 543 ~~l~~av~~~d~~~~~~~l~~~gadvn~~~~~~~~~t~l~la~~~~ 588 (629)
..|+.|+..+++..+- .|+..|+|+|.... .+.||||+|+..+
T Consensus 624 ~~L~~Aa~~g~~~~v~-~Ll~~Gadin~~d~--~G~TpLh~A~~~g 666 (823)
T PLN03192 624 DLLCTAAKRNDLTAMK-ELLKQGLNVDSEDH--QGATALQVAMAED 666 (823)
T ss_pred hHHHHHHHhCCHHHHH-HHHHCCCCCCCCCC--CCCCHHHHHHHCC
Confidence 3578888888887655 44578999887643 5789999988765
No 193
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=62.85 E-value=4.6 Score=42.41 Aligned_cols=51 Identities=16% Similarity=0.055 Sum_probs=36.9
Q ss_pred cccccCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhCCCCcccc-CCCCCCCCcchHHhhhh
Q 006831 527 IFVHKRKDHHHLLSVAQQLWESVRDNDKKAVYRQIICSEPNVNAI-HGQASYGKRLPLATVME 588 (629)
Q Consensus 527 ~f~~~~~~~~~~~~~~~~l~~av~~~d~~~~~~~l~~~gadvn~~-~~~~~~~t~l~la~~~~ 588 (629)
.|+++...+ -|..|...+++..+- +|+-.|||||.- +| ...||||.|+--|
T Consensus 39 n~~D~sGMs--------~LahAaykGnl~~v~-lll~~gaDvN~~qhg--~~YTpLmFAALSG 90 (396)
T KOG1710|consen 39 NQRDPSGMS--------VLAHAAYKGNLTLVE-LLLELGADVNDKQHG--TLYTPLMFAALSG 90 (396)
T ss_pred hccCCCccc--------HHHHHHhcCcHHHHH-HHHHhCCCcCccccc--ccccHHHHHHHcC
Confidence 455555543 255677788887765 556889999994 44 3589999998888
No 194
>PHA02798 ankyrin-like protein; Provisional
Probab=62.09 E-value=8.4 Score=43.43 Aligned_cols=42 Identities=24% Similarity=0.149 Sum_probs=32.7
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCccccCCCCCCCCcchHHhhhh
Q 006831 544 QLWESVRDNDKKAVYRQIICSEPNVNAIHGQASYGKRLPLATVME 588 (629)
Q Consensus 544 ~l~~av~~~d~~~~~~~l~~~gadvn~~~~~~~~~t~l~la~~~~ 588 (629)
-|+.||..++.+.+- +|+..|||||.... .|.||||+|+.-+
T Consensus 261 PL~~A~~~~~~~~v~-~LL~~GAdin~~d~--~G~TpL~~A~~~~ 302 (489)
T PHA02798 261 PLYYSVSHNNRKIFE-YLLQLGGDINIITE--LGNTCLFTAFENE 302 (489)
T ss_pred HHHHHHHcCcHHHHH-HHHHcCCcccccCC--CCCcHHHHHHHcC
Confidence 467888888887654 56688999999764 4789999998644
No 195
>PHA02989 ankyrin repeat protein; Provisional
Probab=61.41 E-value=9 Score=43.26 Aligned_cols=42 Identities=12% Similarity=0.056 Sum_probs=33.2
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCccccCCCCCCCCcchHHhhhh
Q 006831 544 QLWESVRDNDKKAVYRQIICSEPNVNAIHGQASYGKRLPLATVME 588 (629)
Q Consensus 544 ~l~~av~~~d~~~~~~~l~~~gadvn~~~~~~~~~t~l~la~~~~ 588 (629)
-|+.|+..++.+.+- +|+..|||||.... .|.||||+|+..+
T Consensus 259 pL~~Aa~~~~~~~v~-~LL~~Gadin~~d~--~G~TpL~~A~~~~ 300 (494)
T PHA02989 259 PLLISAKVDNYEAFN-YLLKLGDDIYNVSK--DGDTVLTYAIKHG 300 (494)
T ss_pred HHHHHHHhcCHHHHH-HHHHcCCCccccCC--CCCCHHHHHHHcC
Confidence 367788888887654 56689999999754 4689999998766
No 196
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=61.03 E-value=9.6 Score=46.12 Aligned_cols=44 Identities=9% Similarity=0.059 Sum_probs=25.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCCCccccCCCCCCCCcchHHhhhh
Q 006831 542 AQQLWESVRDNDKKAVYRQIICSEPNVNAIHGQASYGKRLPLATVME 588 (629)
Q Consensus 542 ~~~l~~av~~~d~~~~~~~l~~~gadvn~~~~~~~~~t~l~la~~~~ 588 (629)
...|+.|+..+|...+- .|+..|+|+|.... .+.||||+|+..+
T Consensus 526 ~~~L~~Aa~~g~~~~l~-~Ll~~G~d~n~~d~--~G~TpLh~Aa~~g 569 (823)
T PLN03192 526 ASNLLTVASTGNAALLE-ELLKAKLDPDIGDS--KGRTPLHIAASKG 569 (823)
T ss_pred hhHHHHHHHcCCHHHHH-HHHHCCCCCCCCCC--CCCCHHHHHHHcC
Confidence 34566666666655443 33456777665433 3567777766665
No 197
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=60.87 E-value=1.6e+02 Score=29.96 Aligned_cols=98 Identities=12% Similarity=0.184 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhHHHH-HHHHHHHHHHH-HHHhhhhHhhhhc--------hHHHHH
Q 006831 37 VVIEEDLHNARTSFEQARFNLVGALSNVE---AKKRFELL-EAVGGTMDAHL-RFFKQGYELLHQM--------EPFINQ 103 (629)
Q Consensus 37 ~E~a~eL~~aRk~f~~asldyv~~l~~vq---~kk~~e~l-e~l~~~~~a~~-~ff~~g~e~~~~l--------~p~~~~ 103 (629)
.++=.+.-++|+.|.+++-+|-.++...- .+|.-+.+ ..+-.-+.+.- .|.+...+.+-.+ -.+++-
T Consensus 101 k~Dl~~vKe~kK~FdK~s~~~d~al~K~~~l~k~k~~~~~~~Ea~~~l~~~R~~F~~~~ldYv~~ln~iq~kKk~e~Le~ 180 (215)
T cd07601 101 ESDLAEIMTLKELFKAASNDHDGVLSKYSRLSKKRENTKVKIEVNDEVYACRKKQHQTAMNYYCALNLLQYKKTTALLEP 180 (215)
T ss_pred HHHhHHHHHHHHHHHHHhHHHHHHHHHHhhCCcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677999999999999998776553 33322333 23444444333 3444444444322 267777
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 006831 104 VLAYAQQSRECSDYEQASLHQRMQDYLKQID 134 (629)
Q Consensus 104 l~~~~q~~r~~~~~~~~~L~~~m~~~k~qi~ 134 (629)
+..+++.+..-+.....-+.+.|..+..++.
T Consensus 181 ll~~m~A~~tff~qG~ell~~~~~pf~~~v~ 211 (215)
T cd07601 181 MIGYLQAQIAFFKMGPEMFTRQTEEFLSDIN 211 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888877777766666556666666553
No 198
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=60.75 E-value=11 Score=44.43 Aligned_cols=42 Identities=12% Similarity=0.037 Sum_probs=28.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCccccCCCCCCCCcchHHhhhh
Q 006831 544 QLWESVRDNDKKAVYRQIICSEPNVNAIHGQASYGKRLPLATVME 588 (629)
Q Consensus 544 ~l~~av~~~d~~~~~~~l~~~gadvn~~~~~~~~~t~l~la~~~~ 588 (629)
.|+.|+..++++.+- +|+..|+|+|.... .+.||||+|+..+
T Consensus 118 pLh~Aa~~g~~eiv~-~LL~~Gadvn~~d~--~G~TpLh~A~~~g 159 (664)
T PTZ00322 118 PLHIACANGHVQVVR-VLLEFGADPTLLDK--DGKTPLELAEENG 159 (664)
T ss_pred HHHHHHHCCCHHHHH-HHHHCCCCCCCCCC--CCCCHHHHHHHCC
Confidence 466677777766544 44567888876543 3568888887766
No 199
>cd05128 RasGAP_GAP1_like The GAP1 family of Ras GTPase-activating proteins includes GAP1(m) (or RASA2), GAP1_IP4BP (or RASA3), Ca2+ -promoted Ras inactivator (CAPRI, or RASAL4), and Ras GTPase activating-like proteins (RASAL) or RASAL1. The members are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin homology domain that is associated with a Bruton's tyrosine kinase motif. While this domain structure is conserved, a small change in the function of each individual domain and the interaction between domains has a marked effect on the regulation of each protein.
Probab=60.57 E-value=2.4 Score=45.40 Aligned_cols=28 Identities=32% Similarity=0.680 Sum_probs=22.0
Q ss_pred cceeEeeeeeeccCC----CCCCceeEEEEEe
Q 006831 176 VQTIKQGYLSKRSSN----LRADWKRRFFVLD 203 (629)
Q Consensus 176 ~~~iKqGyL~Krs~~----~~k~WkRRwFvL~ 203 (629)
..++|+|++.||..+ .++.||||||.|+
T Consensus 284 ~~~~k~g~~~~~~~~~~~~~~~~~k~r~~~lt 315 (315)
T cd05128 284 PVVLKEGFMIKRAQGRGRLGRKNFKKRYFRLT 315 (315)
T ss_pred chhhhhhhhHhhcccCCCccccchhheeeecC
Confidence 457899999988643 3468999999884
No 200
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....
Probab=60.01 E-value=5.9 Score=28.88 Aligned_cols=33 Identities=15% Similarity=0.364 Sum_probs=28.1
Q ss_pred CCCCCCCCCCCCCceecccceeEecccccc-ccc
Q 006831 403 NNKCADCGASEPDWASLNLGVLICIQCSGV-HRN 435 (629)
Q Consensus 403 N~~CaDCg~~~p~w~s~n~Gv~lC~~Csgv-HR~ 435 (629)
+..|..|+.....+-+.+-++++|..|... |+.
T Consensus 3 ~~~C~~H~~~~~~~~C~~C~~~~C~~C~~~~H~~ 36 (42)
T PF00643_consen 3 EPKCPEHPEEPLSLFCEDCNEPLCSECTVSGHKG 36 (42)
T ss_dssp SSB-SSTTTSBEEEEETTTTEEEEHHHHHTSTTT
T ss_pred CccCccCCccceEEEecCCCCccCccCCCCCCCC
Confidence 567999998878899999999999999987 886
No 201
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=59.68 E-value=7.8 Score=46.39 Aligned_cols=40 Identities=15% Similarity=0.095 Sum_probs=30.4
Q ss_pred HHHHHhcCCHHH----HHHHHHhCCCCccccCCCCCCCCcchHHhh
Q 006831 545 LWESVRDNDKKA----VYRQIICSEPNVNAIHGQASYGKRLPLATV 586 (629)
Q Consensus 545 l~~av~~~d~~~----~~~~l~~~gadvn~~~~~~~~~t~l~la~~ 586 (629)
|+.|+..++... +.++|+..|||||.... .|.||||+|..
T Consensus 501 Lh~Aa~~g~~~~v~~e~~k~LL~~GADIN~~d~--~G~TPLh~A~~ 544 (764)
T PHA02716 501 LHVSIISHTNANIVMDSFVYLLSIQYNINIPTK--NGVTPLMLTMR 544 (764)
T ss_pred HHHHHHcCCccchhHHHHHHHHhCCCCCcccCC--CCCCHHHHHHH
Confidence 667777766543 35677899999998643 57899999985
No 202
>TIGR00613 reco DNA repair protein RecO. All proteins in this family for which functions are known are DNA binding proteins that are involved in the initiation of recombination or recombinational repair.
Probab=59.42 E-value=7.9 Score=39.33 Aligned_cols=33 Identities=33% Similarity=0.661 Sum_probs=27.3
Q ss_pred ccCCCCCCCCCCCCC-CceecccceeEecccccc
Q 006831 400 VYGNNKCADCGASEP-DWASLNLGVLICIQCSGV 432 (629)
Q Consensus 400 ~p~N~~CaDCg~~~p-~w~s~n~Gv~lC~~Csgv 432 (629)
.|.-..|+.||..++ .+.+..-|-++|..|.+.
T Consensus 144 ~p~l~~C~~cg~~~~~~~fs~~~gg~~C~~c~~~ 177 (241)
T TIGR00613 144 ALDLDKCAVCGSKEDLIYFSMTYGGALCRQCGEK 177 (241)
T ss_pred CcccCccCCCCCcCCCceEchhcCeEEChhhCcc
Confidence 466789999998654 677899999999999874
No 203
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=58.99 E-value=9.3 Score=37.79 Aligned_cols=42 Identities=7% Similarity=-0.035 Sum_probs=21.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCccccCCCCCCCCcchHHhhhh
Q 006831 544 QLWESVRDNDKKAVYRQIICSEPNVNAIHGQASYGKRLPLATVME 588 (629)
Q Consensus 544 ~l~~av~~~d~~~~~~~l~~~gadvn~~~~~~~~~t~l~la~~~~ 588 (629)
.|+-|+..+-++-+ ++|+-.||.|+...- .+.||||=|++.|
T Consensus 109 ~LHyAagK~r~eIa-qlLle~ga~i~~kD~--~~qtplHRAAavG 150 (226)
T KOG4412|consen 109 CLHYAAGKGRLEIA-QLLLEKGALIRIKDK--QGQTPLHRAAAVG 150 (226)
T ss_pred eehhhhcCChhhHH-HHHHhcCCCCccccc--ccCchhHHHHhcc
Confidence 34555555444433 344455666665432 2356666666665
No 204
>PHA02795 ankyrin-like protein; Provisional
Probab=58.69 E-value=10 Score=42.55 Aligned_cols=38 Identities=16% Similarity=0.104 Sum_probs=30.4
Q ss_pred HhcCCHHHHHHHHHhCCCCccccCCCCCCCCcchHHhhhh
Q 006831 549 VRDNDKKAVYRQIICSEPNVNAIHGQASYGKRLPLATVME 588 (629)
Q Consensus 549 v~~~d~~~~~~~l~~~gadvn~~~~~~~~~t~l~la~~~~ 588 (629)
+..++...+..+|+..|||+|.... .+.||||.|+..+
T Consensus 195 a~~~~~~eIve~LIs~GADIN~kD~--~G~TpLh~Aa~~g 232 (437)
T PHA02795 195 VDEPTVLEIYKLCIPYIEDINQLDA--GGRTLLYRAIYAG 232 (437)
T ss_pred HHhcCHHHHHHHHHhCcCCcCcCCC--CCCCHHHHHHHcC
Confidence 4456667777888899999998754 4689999998777
No 205
>PHA02874 ankyrin repeat protein; Provisional
Probab=58.61 E-value=11 Score=41.79 Aligned_cols=43 Identities=5% Similarity=0.030 Sum_probs=33.2
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCccccCCCCCCCCcchHHhhhh
Q 006831 544 QLWESVRDNDKKAVYRQIICSEPNVNAIHGQASYGKRLPLATVME 588 (629)
Q Consensus 544 ~l~~av~~~d~~~~~~~l~~~gadvn~~~~~~~~~t~l~la~~~~ 588 (629)
-|+.|+..+.-..++++|+..|||+|.... .|.||||+|+...
T Consensus 257 pLh~A~~~~~~~~iv~~Ll~~gad~n~~d~--~g~TpL~~A~~~~ 299 (434)
T PHA02874 257 PLHHAINPPCDIDIIDILLYHKADISIKDN--KGENPIDTAFKYI 299 (434)
T ss_pred HHHHHHhcCCcHHHHHHHHHCcCCCCCCCC--CCCCHHHHHHHhC
Confidence 467788776555567788889999998755 4789999998765
No 206
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=58.47 E-value=5.7 Score=40.25 Aligned_cols=41 Identities=27% Similarity=0.168 Sum_probs=33.5
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCccccCCCCCCCCcchHHhhhh
Q 006831 545 LWESVRDNDKKAVYRQIICSEPNVNAIHGQASYGKRLPLATVME 588 (629)
Q Consensus 545 l~~av~~~d~~~~~~~l~~~gadvn~~~~~~~~~t~l~la~~~~ 588 (629)
|.-||+.|.++.+-.+ +++|||||.- ..+|.+++.+|+++|
T Consensus 230 LlyAvrgnhvkcve~L-l~sGAd~t~e--~dsGy~~mdlAValG 270 (296)
T KOG0502|consen 230 LLYAVRGNHVKCVESL-LNSGADVTQE--DDSGYWIMDLAVALG 270 (296)
T ss_pred eeeeecCChHHHHHHH-HhcCCCcccc--cccCCcHHHHHHHhh
Confidence 4558999999987654 5899999863 447899999999998
No 207
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=58.35 E-value=9.9 Score=42.96 Aligned_cols=39 Identities=23% Similarity=0.158 Sum_probs=30.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCccccCCCCCCCCcchHHh
Q 006831 544 QLWESVRDNDKKAVYRQIICSEPNVNAIHGQASYGKRLPLAT 585 (629)
Q Consensus 544 ~l~~av~~~d~~~~~~~l~~~gadvn~~~~~~~~~t~l~la~ 585 (629)
.|+.||++++..-| +.|+-.|||||+... +|.||||.|+
T Consensus 586 aLHNAiCaghyeIV-kFLi~~ganVNa~DS--dGWTPLHCAA 624 (752)
T KOG0515|consen 586 ALHNAICAGHYEIV-KFLIEFGANVNAADS--DGWTPLHCAA 624 (752)
T ss_pred HHhhhhhcchhHHH-HHHHhcCCcccCccC--CCCchhhhhh
Confidence 57778888887655 456678999999754 5799999984
No 208
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=58.04 E-value=11 Score=36.93 Aligned_cols=41 Identities=17% Similarity=0.024 Sum_probs=31.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCccccCCCCCCCCcchHHhhh
Q 006831 544 QLWESVRDNDKKAVYRQIICSEPNVNAIHGQASYGKRLPLATVM 587 (629)
Q Consensus 544 ~l~~av~~~d~~~~~~~l~~~gadvn~~~~~~~~~t~l~la~~~ 587 (629)
-|..|+..+.+.-+-.+ +.+|||+++...+ |-||||-||.-
T Consensus 100 pLHRAaYn~h~div~~l-l~~gAn~~a~T~~--GWTPLhSAckW 140 (228)
T KOG0512|consen 100 PLHRAAYNGHLDIVHEL-LLSGANKEAKTNE--GWTPLHSACKW 140 (228)
T ss_pred HHHHHHhcCchHHHHHH-HHccCCccccccc--Cccchhhhhcc
Confidence 47788888888766644 4789999997554 68999998753
No 209
>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=57.66 E-value=63 Score=34.44 Aligned_cols=56 Identities=23% Similarity=0.442 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhHhhhhc
Q 006831 40 EEDLHNARTSFEQARFNLVG-ALSNVEAKKRFELLEAVGGTMDAHLRFFKQGYELLHQM 97 (629)
Q Consensus 40 a~eL~~aRk~f~~asldyv~-~l~~vq~kk~~e~le~l~~~~~a~~~ff~~g~e~~~~l 97 (629)
+++|-.|+..|++ |.+++- .|-++. -.+.+-++.+..+++++++|+++..++++.+
T Consensus 175 dEelrqA~eKfEE-SkE~aE~sM~nll-e~d~eqvsqL~~Li~aqLdfhrqs~~iL~~l 231 (366)
T KOG1118|consen 175 DEELRQALEKFEE-SKELAEDSMFNLL-ENDVEQVSQLSALIQAQLDFHRQSTQILQEL 231 (366)
T ss_pred hHHHHHHHHHHHH-HHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666643 333331 222221 2366889999999999999999988776543
No 210
>PHA02876 ankyrin repeat protein; Provisional
Probab=57.04 E-value=12 Score=44.10 Aligned_cols=42 Identities=24% Similarity=0.174 Sum_probs=23.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCccccCCCCCCCCcchHHhhh
Q 006831 544 QLWESVRDNDKKAVYRQIICSEPNVNAIHGQASYGKRLPLATVM 587 (629)
Q Consensus 544 ~l~~av~~~d~~~~~~~l~~~gadvn~~~~~~~~~t~l~la~~~ 587 (629)
.|+.|+..+....++++|+..|||+|.... .+.||||+|...
T Consensus 445 pLh~Aa~~~~~~~iv~lLl~~Gad~n~~d~--~g~tpl~~a~~~ 486 (682)
T PHA02876 445 PLHYACKKNCKLDVIEMLLDNGADVNAINI--QNQYPLLIALEY 486 (682)
T ss_pred HHHHHHHhCCcHHHHHHHHHCCCCCCCCCC--CCCCHHHHHHHh
Confidence 345555554333445555666777776543 346777776543
No 211
>PF15518 L_protein_N: L protein N-terminus; PDB: 2XI5_D 2XI7_D.
Probab=56.09 E-value=29 Score=33.74 Aligned_cols=62 Identities=23% Similarity=0.175 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 006831 14 GNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMD 81 (629)
Q Consensus 14 q~kyd~~~~ky~slsk~k~~~~~~E~a~eL~~aRk~f~~asldyv~~l~~vq~kk~~e~le~l~~~~~ 81 (629)
+.+|+|.+.|-.+ .+++++++.+..+|.++|..|- .-++|.+|+- +.|-++-+.+.++.++-
T Consensus 3 ~~~~~q~~~RI~~---~rda~vaKDI~~DLl~~RHnYF--grelC~~l~I-EYRNDVp~~DIlLd~~P 64 (183)
T PF15518_consen 3 DQKYNQFRARINA---ARDAEVAKDIDVDLLMARHNYF--GRELCKALNI-EYRNDVPLDDILLDVLP 64 (183)
T ss_dssp HHHHHHHHHHHHH-----SHHHHHHHHHHHHHHHHHHH--HHHHHHHHT-----SS--HHHHHHHHST
T ss_pred HHHHHHHHHHHHh---cCChHHhhhhhHHHHHHHhHHH--HHHHHHHhCc-hhhcCCcHHHHHHHHcC
Confidence 5678888888655 4589999999999999999994 4456666654 89999888888887776
No 212
>PHA03100 ankyrin repeat protein; Provisional
Probab=55.87 E-value=13 Score=41.41 Aligned_cols=41 Identities=22% Similarity=0.156 Sum_probs=21.3
Q ss_pred HHHHHhcC--CHHHHHHHHHhCCCCccccCCCCCCCCcchHHhhhh
Q 006831 545 LWESVRDN--DKKAVYRQIICSEPNVNAIHGQASYGKRLPLATVME 588 (629)
Q Consensus 545 l~~av~~~--d~~~~~~~l~~~gadvn~~~~~~~~~t~l~la~~~~ 588 (629)
|..|+..+ +.+ ++++|+..|+|+|.... .+.||||+|+..+
T Consensus 145 L~~A~~~~~~~~~-iv~~Ll~~g~din~~d~--~g~tpL~~A~~~~ 187 (480)
T PHA03100 145 LHLYLESNKIDLK-ILKLLIDKGVDINAKNR--YGYTPLHIAVEKG 187 (480)
T ss_pred HHHHHHcCCChHH-HHHHHHHCCCCcccccC--CCCCHHHHHHHhC
Confidence 44555555 333 33444556666665433 3456666665544
No 213
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=55.72 E-value=94 Score=31.25 Aligned_cols=60 Identities=15% Similarity=0.137 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhHhhhh
Q 006831 37 VVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRFFKQGYELLHQ 96 (629)
Q Consensus 37 ~E~a~eL~~aRk~f~~asldyv~~l~~vq~kk~~e~le~l~~~~~a~~~ff~~g~e~~~~ 96 (629)
++.+.....+++.|...+=..-..+..++..+-.+|-..+..|+.++..+++...++.+.
T Consensus 153 ~~~e~~~~~a~~~~e~is~~~k~El~rF~~~r~~dfk~~l~~~~e~~ie~~k~~ie~We~ 212 (216)
T cd07627 153 EEAERRASELKKEFEEVSELIKSELERFERERVEDFRNSVEIYLESAIESQKELIELWET 212 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566777888777777788999999999999999999999999999887665543
No 214
>cd01255 PH_TIAM TIAM Pleckstrin homology (PH) domain. TIAM Pleckstrin homology (PH) domain. TIAM (T-cell invasion and metastasis) is a guanine nucleotide exchange factor specific for RAC1. It consists of an N-terminal PH domain followed by Raf-like ras binding domain(RDB), a PDZ domain, a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. This subfamily contains the alignment of the PH domain that follows the DH domain.
Probab=55.53 E-value=36 Score=32.31 Aligned_cols=40 Identities=18% Similarity=0.424 Sum_probs=34.3
Q ss_pred CCCcceEEEee--------CCcEEEEEeCCHHHHHHHHHHHHHHHHHH
Q 006831 277 SDLRFCFRIIS--------PTKVYTLQAENTLDQMDWIEKINGVIASL 316 (629)
Q Consensus 277 ~drrfcF~Iit--------~~rty~LqAeSe~E~~~WI~aI~~aI~~~ 316 (629)
.+-.+.|+|+. |+++|.||+.+.+-+...|..|+..|...
T Consensus 110 ~e~~~vwEliH~kSe~egRpE~vfqLCcS~~E~k~~flK~Irsilre~ 157 (160)
T cd01255 110 MESNFLWELIHLKSELEGRPEKVFVLCCSTAESRNAFLKTIRSILRES 157 (160)
T ss_pred cccceEEEEEeecccccCCCcceEEEecCCHHHHHHHHHHHHHHHHHH
Confidence 45679999996 45899999999999999999999888654
No 215
>KOG3551 consensus Syntrophins (type beta) [Extracellular structures]
Probab=55.32 E-value=18 Score=39.52 Aligned_cols=39 Identities=26% Similarity=0.480 Sum_probs=34.4
Q ss_pred cceEEEeeCC--cEEEEEeCCHHHHHHHHHHHHHHHHHHhc
Q 006831 280 RFCFRIISPT--KVYTLQAENTLDQMDWIEKINGVIASLLS 318 (629)
Q Consensus 280 rfcF~Iit~~--rty~LqAeSe~E~~~WI~aI~~aI~~~l~ 318 (629)
.-||+|.+|+ .+..|.|.+..+.+.|..||..++..++.
T Consensus 236 nR~lEihSpdg~~tliLR~kdsa~A~~Wf~AiHa~v~~ll~ 276 (506)
T KOG3551|consen 236 NRQLEIHSPDGRHTLILRAKDSAEADSWFEAIHANVNTLLT 276 (506)
T ss_pred cceeeeeCCCCcceEEEEccCcHHHHHHHHHHHHHHhhHHH
Confidence 4689999998 58899999999999999999999876664
No 216
>PHA02859 ankyrin repeat protein; Provisional
Probab=55.13 E-value=15 Score=36.51 Aligned_cols=29 Identities=10% Similarity=0.090 Sum_probs=15.8
Q ss_pred HHHHHHHhCCCCccccCCCCCCCCcchHHhh
Q 006831 556 AVYRQIICSEPNVNAIHGQASYGKRLPLATV 586 (629)
Q Consensus 556 ~~~~~l~~~gadvn~~~~~~~~~t~l~la~~ 586 (629)
.++.+|+..|||+|.... .+.||||+|+.
T Consensus 104 eiv~~Ll~~gadin~~d~--~G~TpLh~a~~ 132 (209)
T PHA02859 104 EILKILIDSGSSITEEDE--DGKNLLHMYMC 132 (209)
T ss_pred HHHHHHHHCCCCCCCcCC--CCCCHHHHHHH
Confidence 444455556666665433 34566666544
No 217
>PF13606 Ank_3: Ankyrin repeat
Probab=54.29 E-value=19 Score=24.51 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=20.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCccc
Q 006831 544 QLWESVRDNDKKAVYRQIICSEPNVNA 570 (629)
Q Consensus 544 ~l~~av~~~d~~~~~~~l~~~gadvn~ 570 (629)
-|..|++.+.++.+ +.|+..|+|||.
T Consensus 5 ~Lh~A~~~g~~e~v-~~Ll~~gadvn~ 30 (30)
T PF13606_consen 5 PLHLAASNGNIEIV-KYLLEHGADVNA 30 (30)
T ss_pred HHHHHHHhCCHHHH-HHHHHcCCCCCC
Confidence 36778888887765 566688999984
No 218
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=54.25 E-value=1.5e+02 Score=30.41 Aligned_cols=85 Identities=11% Similarity=0.121 Sum_probs=48.0
Q ss_pred HhHHHHHHHHHHhcccCCCCcchHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 006831 13 DGNFVLQAREKFLSLRKSTRMDVAVVIEEDLHN-------ARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLR 85 (629)
Q Consensus 13 ~q~kyd~~~~ky~slsk~k~~~~~~E~a~eL~~-------aRk~f~~asldyv~~l~~vq~kk~~e~le~l~~~~~a~~~ 85 (629)
++......+++...|....+++.+.++.+++.+ +++.|+..+=..=..|..++..+--+|-..+..|+.++..
T Consensus 138 a~~~L~kkr~~~~Kl~~~~k~dK~~~~~~ev~~~e~~~~~a~~~fe~Is~~~k~El~rFe~er~~dfk~~l~~fles~ie 217 (234)
T cd07664 138 AQVTLQKKREAEAKLQYANKPDKLQQAKDEIKEWEAKVQQGERDFEQISKTIRKEVGRFEKERVKDFKTVIIKYLESLVQ 217 (234)
T ss_pred HHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344333343333323345566666666655 4555555554444567777777777788888888887777
Q ss_pred HHhhhhHhhhhc
Q 006831 86 FFKQGYELLHQM 97 (629)
Q Consensus 86 ff~~g~e~~~~l 97 (629)
+-....++...|
T Consensus 218 ~qke~ie~We~f 229 (234)
T cd07664 218 TQQQLIKYWEAF 229 (234)
T ss_pred HHHHHHHHHHHh
Confidence 655554444443
No 219
>PHA02741 hypothetical protein; Provisional
Probab=54.18 E-value=18 Score=34.53 Aligned_cols=41 Identities=15% Similarity=0.150 Sum_probs=31.9
Q ss_pred HHHHHhcCCHHHHHHHHHh-CCCCccccCCCCCCCCcchHHhhhh
Q 006831 545 LWESVRDNDKKAVYRQIIC-SEPNVNAIHGQASYGKRLPLATVME 588 (629)
Q Consensus 545 l~~av~~~d~~~~~~~l~~-~gadvn~~~~~~~~~t~l~la~~~~ 588 (629)
|+.|+..++.+.+- +|+. .|+|+|.... .+.||||+|...+
T Consensus 102 Lh~A~~~~~~~iv~-~Ll~~~g~~~~~~n~--~g~tpL~~A~~~~ 143 (169)
T PHA02741 102 LHLAAHRRDHDLAE-WLCCQPGIDLHFCNA--DNKSPFELAIDNE 143 (169)
T ss_pred HHHHHHcCCHHHHH-HHHhCCCCCCCcCCC--CCCCHHHHHHHCC
Confidence 67899999887655 5555 5999997654 4789999998766
No 220
>PHA02876 ankyrin repeat protein; Provisional
Probab=53.84 E-value=15 Score=43.17 Aligned_cols=28 Identities=29% Similarity=0.353 Sum_probs=12.5
Q ss_pred HHHHhCCCCccccCCCCCCCCcchHHhhhh
Q 006831 559 RQIICSEPNVNAIHGQASYGKRLPLATVME 588 (629)
Q Consensus 559 ~~l~~~gadvn~~~~~~~~~t~l~la~~~~ 588 (629)
++|+..|+|+|.... .+.||||.|+..+
T Consensus 325 ~~Ll~~gadin~~d~--~g~TpLh~A~~~~ 352 (682)
T PHA02876 325 RTLIMLGADVNAADR--LYITPLHQASTLD 352 (682)
T ss_pred HHHHHcCCCCCCccc--CCCcHHHHHHHhC
Confidence 333444555554322 2345555555443
No 221
>PHA02859 ankyrin repeat protein; Provisional
Probab=53.41 E-value=15 Score=36.50 Aligned_cols=37 Identities=14% Similarity=0.117 Sum_probs=25.7
Q ss_pred HhcCCHHHHHHHHHhCCCCccccCCCCCCCCcchHHhhhh
Q 006831 549 VRDNDKKAVYRQIICSEPNVNAIHGQASYGKRLPLATVME 588 (629)
Q Consensus 549 v~~~d~~~~~~~l~~~gadvn~~~~~~~~~t~l~la~~~~ 588 (629)
+..++. .++.+|+..|+|+|.... .+.||||+|.-.+
T Consensus 167 ~~~~~~-~iv~~Ll~~Gadi~~~d~--~g~tpl~la~~~~ 203 (209)
T PHA02859 167 LFHSDK-KIFDFLTSLGIDINETNK--SGYNCYDLIKFRN 203 (209)
T ss_pred HhcCCH-HHHHHHHHcCCCCCCCCC--CCCCHHHHHhhhh
Confidence 334444 455677788999997654 4789999996543
No 222
>KOG4407 consensus Predicted Rho GTPase-activating protein [General function prediction only]
Probab=53.36 E-value=1.3 Score=54.21 Aligned_cols=109 Identities=15% Similarity=0.134 Sum_probs=65.0
Q ss_pred eeEeeeeeec------c---CCCCCCceeEEEEEecCceEEEEeCCCCCCCcCCCcccccCCCCCCcccccccccccccc
Q 006831 178 TIKQGYLSKR------S---SNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHY 248 (629)
Q Consensus 178 ~iKqGyL~Kr------s---~~~~k~WkRRwFvL~~~glLyYy~~~~~~~~g~~~~~~~~~~~~~~~g~g~l~~~~~~~~ 248 (629)
..|+|||+.+ + +.....|++-|.+|.++.++.|.......+...... ++|..+
T Consensus 923 ~~megWly~~q~~SkkGk~tGssLr~wk~~y~~l~ghsl~L~ss~re~~~~~aas~-----------as~~~s------- 984 (1973)
T KOG4407|consen 923 SEMEGWLYVLQSSSKKGKATGSSLREWKLSYTGLHGHSLVLNSSAREHNSQSAASL-----------ASSSCS------- 984 (1973)
T ss_pred hhhhcceeeeeecccCCcccCcchhhhhhHHHHhccccceecccccccCcchhhhh-----------cccccc-------
Confidence 4689999843 2 112257999999998777665554443221111111 011100
Q ss_pred CCCccccccceeeEeecccceeecCCCCCCCcceEEEeeCC-cEEEEEeCCHHHHHHHHHHHHHHH
Q 006831 249 HGGVHDEKSVARHTVNLLTSTIKPDADQSDLRFCFRIISPT-KVYTLQAENTLDQMDWIEKINGVI 313 (629)
Q Consensus 249 ~g~v~d~~~~~~~~i~l~~~~vk~~~d~~drrfcF~Iit~~-rty~LqAeSe~E~~~WI~aI~~aI 313 (629)
+ ....++ +-.|-+.+.-.+..++..|++.+.+ -.+.||||+.++|-.|++.++...
T Consensus 985 -----t--~tts~c--~nscltdI~ysetkrn~vfRLTt~d~ce~lfqaeDrddmlgG~~ttq~St 1041 (1973)
T KOG4407|consen 985 -----T--ATTSEC--LNSCLTDIQYSETKRNQVFRLTTNDLCEGLFQAEDRDDMLGGLSTTQSST 1041 (1973)
T ss_pred -----c--ccCccc--cccchhhhhhhhhhhhhHHHhHHHHHHhHhhccCccccccchhhhhhhcc
Confidence 0 011122 2234443322345678999999998 789999999999999999886544
No 223
>PHA02878 ankyrin repeat protein; Provisional
Probab=53.30 E-value=16 Score=41.00 Aligned_cols=41 Identities=12% Similarity=0.129 Sum_probs=26.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCccccCCCCCCCCcchHHhhh
Q 006831 544 QLWESVRDNDKKAVYRQIICSEPNVNAIHGQASYGKRLPLATVM 587 (629)
Q Consensus 544 ~l~~av~~~d~~~~~~~l~~~gadvn~~~~~~~~~t~l~la~~~ 587 (629)
.|+.|++.++... +++|+..|||+|.... .+.||||+|+..
T Consensus 204 pLh~A~~~~~~~i-v~~Ll~~ga~in~~d~--~g~TpLh~A~~~ 244 (477)
T PHA02878 204 PLHHAVKHYNKPI-VHILLENGASTDARDK--CGNTPLHISVGY 244 (477)
T ss_pred HHHHHHHhCCHHH-HHHHHHcCCCCCCCCC--CCCCHHHHHHHh
Confidence 4566777666553 4455567777776543 457788877754
No 224
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=53.16 E-value=9.4 Score=27.55 Aligned_cols=25 Identities=32% Similarity=0.869 Sum_probs=21.5
Q ss_pred CCCCCCCCCCCCCceecccceeEecccc
Q 006831 403 NNKCADCGASEPDWASLNLGVLICIQCS 430 (629)
Q Consensus 403 N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs 430 (629)
|..|..|++. |...+=|-+.|.+|-
T Consensus 8 ~~~C~~C~~~---~~~~~dG~~yC~~cG 32 (36)
T PF11781_consen 8 NEPCPVCGSR---WFYSDDGFYYCDRCG 32 (36)
T ss_pred CCcCCCCCCe---EeEccCCEEEhhhCc
Confidence 5679999988 778888999999994
No 225
>KOG1170 consensus Diacylglycerol kinase [Lipid transport and metabolism]
Probab=52.86 E-value=0.68 Score=54.01 Aligned_cols=35 Identities=26% Similarity=0.396 Sum_probs=30.5
Q ss_pred CcceEEEeeCCcEEEEEeCCHHHHHHHHHHHHHHH
Q 006831 279 LRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVI 313 (629)
Q Consensus 279 rrfcF~Iit~~rty~LqAeSe~E~~~WI~aI~~aI 313 (629)
.+..|.|++|-|+..++|++..+|..||.+++..-
T Consensus 60 ~~~sf~vi~~~rk~r~~adn~ke~e~wi~~~kt~q 94 (1099)
T KOG1170|consen 60 PRPSFCVITPVRKHRLCADNRKEMEKWINQSKTPQ 94 (1099)
T ss_pred CCCCeeEecccHHhhhhccchhHHHHhhccccchh
Confidence 35668899999999999999999999999887554
No 226
>cd07589 BAR_DNMBP The Bin/Amphiphysin/Rvs (BAR) domain of Dynamin Binding Protein. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. DyNamin Binding Protein (DNMBP), also called Tuba, is a Cdc42-specific Guanine nucleotide Exchange Factor (GEF) that binds dynamin and various actin regulatory proteins. It serves as a link between dynamin function, Rho GTPase signaling, and actin dynamics. It plays an important role in regulating cell junction configuration. DNMBP contains BAR and SH3 domains as well as a Dbl Homology domain (DH domain), which harbors GEF activity. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of DNMBP may be involved in binding to membranes. The gene encoding DNMBP is a candidate gene for late onset Alzheimer's disease.
Probab=52.84 E-value=85 Score=31.14 Aligned_cols=71 Identities=15% Similarity=0.136 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHHHHhhhhH
Q 006831 14 GNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLE-AVGGTMDAHLRFFKQGYE 92 (629)
Q Consensus 14 q~kyd~~~~ky~slsk~k~~~~~~E~a~eL~~aRk~f~~asldyv~~l~~vq~kk~~e~le-~l~~~~~a~~~ff~~g~e 92 (629)
.-+||..+.+.-+ +..++.++..++..|...--.|.-.|..+-.... .++. .+.+|+..|.+||...++
T Consensus 115 llDYdr~~~~~~k---------~~k~e~~l~~a~~~y~~lN~~L~~ELP~l~~~~~-~~l~~~~~s~~~~Q~~~~~~~~~ 184 (195)
T cd07589 115 LLDYERYKEKKER---------GGKVDEELEEAANQYEALNAQLKEELPKFNQLTA-QLLETCLKSFVELQRDLYDTLLK 184 (195)
T ss_pred hccHHHHHHHHHh---------hcchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457766665433 2336788999999999998889999998877666 5666 555899999999999877
Q ss_pred hh
Q 006831 93 LL 94 (629)
Q Consensus 93 ~~ 94 (629)
.+
T Consensus 185 ~~ 186 (195)
T cd07589 185 RA 186 (195)
T ss_pred Hh
Confidence 64
No 227
>PHA02874 ankyrin repeat protein; Provisional
Probab=52.80 E-value=17 Score=40.16 Aligned_cols=45 Identities=22% Similarity=0.252 Sum_probs=35.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCCCccccCCCCCCCCcchHHhhhhh
Q 006831 542 AQQLWESVRDNDKKAVYRQIICSEPNVNAIHGQASYGKRLPLATVMEM 589 (629)
Q Consensus 542 ~~~l~~av~~~d~~~~~~~l~~~gadvn~~~~~~~~~t~l~la~~~~~ 589 (629)
.-.|+.|+..++.+-+- +|+..|+|+|.... .+.||||.|+..+.
T Consensus 36 ~tpL~~A~~~g~~~iv~-~Ll~~Ga~~n~~~~--~~~t~L~~A~~~~~ 80 (434)
T PHA02874 36 TTPLIDAIRSGDAKIVE-LFIKHGADINHINT--KIPHPLLTAIKIGA 80 (434)
T ss_pred CCHHHHHHHcCCHHHHH-HHHHCCCCCCCCCC--CCCCHHHHHHHcCC
Confidence 34678899999988765 55688999998654 35799999999985
No 228
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=52.45 E-value=6.8 Score=41.44 Aligned_cols=45 Identities=27% Similarity=0.479 Sum_probs=39.0
Q ss_pred CCCCCcceEEEeeCCcEEEEEeCCHHHHHHHHHHHHHHHHHHhcc
Q 006831 275 DQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVIASLLSF 319 (629)
Q Consensus 275 d~~drrfcF~Iit~~rty~LqAeSe~E~~~WI~aI~~aI~~~l~~ 319 (629)
++..-+.+..|.+..+.+.+-|.+..|+.+|+..|..++...++.
T Consensus 102 ~~~~~~~~~~~~S~~ks~~~~~as~~ek~e~~~~i~~~~~~~l~~ 146 (288)
T KOG1729|consen 102 DNERVRNGWQILSALKSFTVLAASQTEKNEWQNHITECVEDLLSK 146 (288)
T ss_pred cccccccchhhhcccchhhhhcchhhhhHHHHHHHHHHHHHHHHH
Confidence 344446689999999999999999999999999999999888865
No 229
>KOG3725 consensus SH3 domain protein SH3GLB [Signal transduction mechanisms]
Probab=52.04 E-value=92 Score=32.33 Aligned_cols=58 Identities=17% Similarity=0.374 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhHhhhh
Q 006831 37 VVIEEDLHNARTSFEQARFNLV-GALSNVEAKKRFELLEAVGGTMDAHLRFFKQGYELLHQ 96 (629)
Q Consensus 37 ~E~a~eL~~aRk~f~~asldyv-~~l~~vq~kk~~e~le~l~~~~~a~~~ff~~g~e~~~~ 96 (629)
..++.+|.-+...|-..+ +.. .-|.-|+.- ...-|.++..|+.+|.+||.|+|.+|-+
T Consensus 199 e~aEqelRvaQ~EFDrQa-EiTrLLLEGIsst-H~nhLrCL~dFVeaQmtyYAQcyq~MlD 257 (375)
T KOG3725|consen 199 EQAEQELRVAQAEFDRQA-EITRLLLEGISST-HNNHLRCLRDFVEAQMTYYAQCYQLMLD 257 (375)
T ss_pred hHHHHHHHHHHHHHhHHH-HHHHHHHHhhhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777775544 221 112222222 3367889999999999999999987654
No 230
>PHA03100 ankyrin repeat protein; Provisional
Probab=51.91 E-value=17 Score=40.40 Aligned_cols=42 Identities=17% Similarity=0.148 Sum_probs=31.7
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCccccCCCCCCCCcchHHhhhh
Q 006831 544 QLWESVRDNDKKAVYRQIICSEPNVNAIHGQASYGKRLPLATVME 588 (629)
Q Consensus 544 ~l~~av~~~d~~~~~~~l~~~gadvn~~~~~~~~~t~l~la~~~~ 588 (629)
.|+.|+..++.+. +++|+..|||+|.... .|.||||+|+.-+
T Consensus 253 pL~~A~~~~~~~i-v~~Ll~~gad~n~~d~--~g~tpl~~A~~~~ 294 (480)
T PHA03100 253 PLHYAVYNNNPEF-VKYLLDLGANPNLVNK--YGDTPLHIAILNN 294 (480)
T ss_pred HHHHHHHcCCHHH-HHHHHHcCCCCCccCC--CCCcHHHHHHHhC
Confidence 3677888888664 4566688999998654 4689999998655
No 231
>KOG1738 consensus Membrane-associated guanylate kinase-interacting protein/connector enhancer of KSR-like [Nucleotide transport and metabolism]
Probab=51.22 E-value=2.6 Score=48.34 Aligned_cols=35 Identities=31% Similarity=0.669 Sum_probs=24.9
Q ss_pred eEeeeeeeccCC--CCCCceeEEEEEecCceEEEEeCC
Q 006831 179 IKQGYLSKRSSN--LRADWKRRFFVLDSRGLLYYYRKP 214 (629)
Q Consensus 179 iKqGyL~Krs~~--~~k~WkRRwFvL~~~glLyYy~~~ 214 (629)
..+|||+++..+ .-..|+|-||||.++-++. |.+.
T Consensus 563 ~~qg~~~r~k~~~~~~~kW~k~~~~l~~~~l~~-y~n~ 599 (638)
T KOG1738|consen 563 DRQGWLTRLKLNHLTQEKWRKIWMVLNDDPLLN-YRNH 599 (638)
T ss_pred hhhccchhhccchHHHHHhhhheeeecCchhhh-hhhh
Confidence 568999987655 2257999999998665444 4444
No 232
>KOG3520 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=50.99 E-value=1.8e+02 Score=36.42 Aligned_cols=43 Identities=26% Similarity=0.393 Sum_probs=34.9
Q ss_pred CCcceEEEeeCC---cEEEEEeCCHHHHHHHHHHHHHHHHHHhccC
Q 006831 278 DLRFCFRIISPT---KVYTLQAENTLDQMDWIEKINGVIASLLSFQ 320 (629)
Q Consensus 278 drrfcF~Iit~~---rty~LqAeSe~E~~~WI~aI~~aI~~~l~~~ 320 (629)
|.+--|-|.+.. -.|.|.|.|..|++-||+.|+.+|.+.-.+.
T Consensus 683 d~ka~FlIs~s~~~pqmYEL~a~T~serntW~~li~~~v~s~~~~~ 728 (1167)
T KOG3520|consen 683 DEKAFFLISMSDQGPEMYELVAQSKSERNTWIQLIQDAVASCPRNE 728 (1167)
T ss_pred cccceEEEecCCCCCeeEEEecCCHHHHHHHHHHHHHHHHhCCccc
Confidence 445557777663 6899999999999999999999998776553
No 233
>PHA02946 ankyin-like protein; Provisional
Probab=50.78 E-value=13 Score=41.73 Aligned_cols=30 Identities=10% Similarity=0.106 Sum_probs=17.8
Q ss_pred HHHHHHhCCCCccccCCCCCCCCcchHHhhhh
Q 006831 557 VYRQIICSEPNVNAIHGQASYGKRLPLATVME 588 (629)
Q Consensus 557 ~~~~l~~~gadvn~~~~~~~~~t~l~la~~~~ 588 (629)
+++.|+..|+|||.... .+.||||+|+..+
T Consensus 54 iv~~Ll~~Gadvn~~d~--~G~TpLh~Aa~~g 83 (446)
T PHA02946 54 FVEELLHRGYSPNETDD--DGNYPLHIASKIN 83 (446)
T ss_pred HHHHHHHCcCCCCccCC--CCCCHHHHHHHcC
Confidence 34455566777776543 3567777776655
No 234
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=49.57 E-value=17 Score=43.56 Aligned_cols=41 Identities=10% Similarity=0.002 Sum_probs=32.0
Q ss_pred HHHHHHhcCCH-HHHHHHHHhCCCCccccCCCCCCCCcchHHhh
Q 006831 544 QLWESVRDNDK-KAVYRQIICSEPNVNAIHGQASYGKRLPLATV 586 (629)
Q Consensus 544 ~l~~av~~~d~-~~~~~~l~~~gadvn~~~~~~~~~t~l~la~~ 586 (629)
-|+.|++.+++ ..++++|+..|||||.... .+.||||.|..
T Consensus 215 PLH~Aa~~g~~~~eIVklLLe~GADVN~kD~--~G~TPLh~Ai~ 256 (764)
T PHA02716 215 PLHTYLITGNVCASVIKKIIELGGDMDMKCV--NGMSPIMTYII 256 (764)
T ss_pred HHHHHHHcCCCCHHHHHHHHHcCCCCCCCCC--CCCCHHHHHHH
Confidence 46778888865 4677888899999998754 47899998753
No 235
>PHA02946 ankyin-like protein; Provisional
Probab=49.24 E-value=21 Score=40.10 Aligned_cols=39 Identities=13% Similarity=0.077 Sum_probs=22.5
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCccccCCCCCCCCcchHHhh
Q 006831 545 LWESVRDNDKKAVYRQIICSEPNVNAIHGQASYGKRLPLATV 586 (629)
Q Consensus 545 l~~av~~~d~~~~~~~l~~~gadvn~~~~~~~~~t~l~la~~ 586 (629)
|+-|+..++.+. +++|+..|||+|.... .+.||||+|+.
T Consensus 76 Lh~Aa~~g~~ei-v~lLL~~GAdin~~d~--~g~TpLh~A~~ 114 (446)
T PHA02946 76 LHIASKINNNRI-VAMLLTHGADPNACDK--QHKTPLYYLSG 114 (446)
T ss_pred HHHHHHcCCHHH-HHHHHHCcCCCCCCCC--CCCCHHHHHHH
Confidence 555666666543 3455566777775432 35677776654
No 236
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=48.58 E-value=22 Score=42.43 Aligned_cols=11 Identities=9% Similarity=-0.082 Sum_probs=6.4
Q ss_pred CCCCcchHHhh
Q 006831 576 SYGKRLPLATV 586 (629)
Q Consensus 576 ~~~t~l~la~~ 586 (629)
.|+||||.|+.
T Consensus 81 ~G~T~Lh~A~~ 91 (743)
T TIGR00870 81 VGDTLLHAISL 91 (743)
T ss_pred cChHHHHHHHh
Confidence 35566666654
No 237
>PHA02798 ankyrin-like protein; Provisional
Probab=47.77 E-value=20 Score=40.36 Aligned_cols=28 Identities=7% Similarity=0.069 Sum_probs=12.9
Q ss_pred HHHHHHhCCCCccccCCCCCCCCcchHHh
Q 006831 557 VYRQIICSEPNVNAIHGQASYGKRLPLAT 585 (629)
Q Consensus 557 ~~~~l~~~gadvn~~~~~~~~~t~l~la~ 585 (629)
++++|+..|+|+|..... .+.||||.+.
T Consensus 163 vv~~Ll~~gadin~~~~~-~~~t~Lh~~~ 190 (489)
T PHA02798 163 IIKLLLEKGVDINTHNNK-EKYDTLHCYF 190 (489)
T ss_pred HHHHHHHhCCCcccccCc-CCCcHHHHHH
Confidence 344444555555543221 2345555443
No 238
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=47.41 E-value=13 Score=27.58 Aligned_cols=27 Identities=37% Similarity=0.748 Sum_probs=19.5
Q ss_pred CCCCCCCCCCCceecccceeEecccccc
Q 006831 405 KCADCGASEPDWASLNLGVLICIQCSGV 432 (629)
Q Consensus 405 ~CaDCg~~~p~w~s~n~Gv~lC~~Csgv 432 (629)
.|..||+.. .-..-..|-++|..|--|
T Consensus 2 ~Cp~Cg~~~-~~~D~~~g~~vC~~CG~V 28 (43)
T PF08271_consen 2 KCPNCGSKE-IVFDPERGELVCPNCGLV 28 (43)
T ss_dssp SBTTTSSSE-EEEETTTTEEEETTT-BB
T ss_pred CCcCCcCCc-eEEcCCCCeEECCCCCCE
Confidence 699999976 233456799999999433
No 239
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=47.17 E-value=21 Score=42.55 Aligned_cols=42 Identities=14% Similarity=0.198 Sum_probs=35.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCccccCCCCCCCCcchHHhhhh
Q 006831 544 QLWESVRDNDKKAVYRQIICSEPNVNAIHGQASYGKRLPLATVME 588 (629)
Q Consensus 544 ~l~~av~~~d~~~~~~~l~~~gadvn~~~~~~~~~t~l~la~~~~ 588 (629)
-|+.|.+.+.++.+- .|+..|||+|..+ .+.+||||.|+..+
T Consensus 276 pLH~a~r~G~~~svd-~Ll~~Ga~I~~kn--~d~~spLH~AA~yg 317 (929)
T KOG0510|consen 276 PLHYAARQGGPESVD-NLLGFGASINSKN--KDEESPLHFAAIYG 317 (929)
T ss_pred hHHHHHHcCChhHHH-HHHHcCCcccccC--CCCCCchHHHHHcc
Confidence 478899999999886 4558899999976 45689999999886
No 240
>PHA02791 ankyrin-like protein; Provisional
Probab=46.88 E-value=23 Score=37.32 Aligned_cols=40 Identities=20% Similarity=0.268 Sum_probs=31.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCccccCCCCCCCCcchHHhhhh
Q 006831 544 QLWESVRDNDKKAVYRQIICSEPNVNAIHGQASYGKRLPLATVME 588 (629)
Q Consensus 544 ~l~~av~~~d~~~~~~~l~~~gadvn~~~~~~~~~t~l~la~~~~ 588 (629)
.|+.|+..++++.+- .|+..|+++|... +.||||+|+..+
T Consensus 33 pLh~Aa~~g~~eiv~-~Ll~~ga~~n~~d----~~TpLh~Aa~~g 72 (284)
T PHA02791 33 ALYYAIADNNVRLVC-TLLNAGALKNLLE----NEFPLHQAATLE 72 (284)
T ss_pred HHHHHHHcCCHHHHH-HHHHCcCCCcCCC----CCCHHHHHHHCC
Confidence 478899988887655 5568899999753 479999998766
No 241
>KOG3549 consensus Syntrophins (type gamma) [Extracellular structures]
Probab=46.54 E-value=46 Score=35.92 Aligned_cols=38 Identities=13% Similarity=0.249 Sum_probs=33.6
Q ss_pred CCcceEEEeeCC-cEEEEEeCCHHHHHHHHHHHHHHHHH
Q 006831 278 DLRFCFRIISPT-KVYTLQAENTLDQMDWIEKINGVIAS 315 (629)
Q Consensus 278 drrfcF~Iit~~-rty~LqAeSe~E~~~WI~aI~~aI~~ 315 (629)
.|++||.|.+.. ...+|..|...|.-.|-.+++.++-.
T Consensus 350 ~R~~CF~~qs~~ge~~yfsVEl~seLa~wE~sfq~Atf~ 388 (505)
T KOG3549|consen 350 SRQHCFLLQSSGGEPRYFSVELRSELARWENSFQAATFT 388 (505)
T ss_pred cccceEEEEcCCCCceEEEEehhhHHHHHHHHHhhHHhH
Confidence 578999999876 78999999999999999999988753
No 242
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=45.62 E-value=2.5e+02 Score=28.72 Aligned_cols=40 Identities=15% Similarity=0.325 Sum_probs=28.0
Q ss_pred HHHhhhhHH-HHHHHHHHHHHHHHHHhhhhHhhhhchHHHH
Q 006831 63 NVEAKKRFE-LLEAVGGTMDAHLRFFKQGYELLHQMEPFIN 102 (629)
Q Consensus 63 ~vq~kk~~e-~le~l~~~~~a~~~ff~~g~e~~~~l~p~~~ 102 (629)
.++++.+|- ||+.+..+++....||..+..++.+.-|-+.
T Consensus 180 l~EERrRyc~lv~~~c~v~~~e~~~~~~~~~~L~~~l~~w~ 220 (223)
T cd07605 180 LLEERRRYCFLVDKHCSVAKHEIAYHAKAMTLLSTRLPLWQ 220 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 344555544 5678889999999999999887765444433
No 243
>TIGR02419 C4_traR_proteo phage/conjugal plasmid C-4 type zinc finger protein, TraR family. Members of this family are putative C4-type zinc finger proteins found almost exclusively in prophage regions, actual phage, or conjugal transfer regions of the Proteobactia. This small protein (about 70 amino acids) appears homologous to but is smaller than DksA (DnaK suppressor protein), found to be critical for regulating transcription of ribosomal RNA.
Probab=45.52 E-value=5.9 Score=32.20 Aligned_cols=33 Identities=27% Similarity=0.598 Sum_probs=23.8
Q ss_pred ccCCCCCCCCCCCCC--CceecccceeEeccccccc
Q 006831 400 VYGNNKCADCGASEP--DWASLNLGVLICIQCSGVH 433 (629)
Q Consensus 400 ~p~N~~CaDCg~~~p--~w~s~n~Gv~lC~~CsgvH 433 (629)
.++...|.|||.+=| .+.- .-|+..|+.|...+
T Consensus 28 ~~s~g~C~~Cg~~Ip~~Rl~a-~p~~~~Cv~Cq~~~ 62 (63)
T TIGR02419 28 GPSLRECEDCGEPIPEARREA-LPGVTRCVSCQEIL 62 (63)
T ss_pred CCCCCeeccCCCcChHHHHhh-cCCcCCcHHHHhhc
Confidence 457789999999765 3333 23788999997653
No 244
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=45.43 E-value=23 Score=38.62 Aligned_cols=58 Identities=24% Similarity=0.222 Sum_probs=42.8
Q ss_pred HHhccCcccccCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhCCCCccccCCCCCCCCcchHHhhhhh
Q 006831 521 AKYAEKIFVHKRKDHHHLLSVAQQLWESVRDNDKKAVYRQIICSEPNVNAIHGQASYGKRLPLATVMEM 589 (629)
Q Consensus 521 ~KY~~k~f~~~~~~~~~~~~~~~~l~~av~~~d~~~~~~~l~~~gadvn~~~~~~~~~t~l~la~~~~~ 589 (629)
.||.--.|..+.+ ...|++|.|++|+..|-++ +..|++||.+..- -.+||-||+--|-
T Consensus 24 ~~~~~s~~~~~~~--------f~elceacR~GD~d~v~~L-VetgvnVN~vD~f--D~spL~lAsLcGH 81 (516)
T KOG0511|consen 24 QDYKPSVPLKKVP--------FGELCEACRAGDVDRVRYL-VETGVNVNAVDRF--DSSPLYLASLCGH 81 (516)
T ss_pred hhcCcccccccCc--------hHHHHHHhhcccHHHHHHH-HHhCCCcchhhcc--cccHHHHHHHcCc
Confidence 3455445555443 4679999999999987654 5799999998543 3799999987773
No 245
>smart00401 ZnF_GATA zinc finger binding to DNA consensus sequence [AT]GATA[AG].
Probab=44.85 E-value=18 Score=28.15 Aligned_cols=36 Identities=28% Similarity=0.672 Sum_probs=28.6
Q ss_pred CCCCCCCCCCC-CCceecccce-eEeccccccccccCc
Q 006831 403 NNKCADCGASE-PDWASLNLGV-LICIQCSGVHRNLGV 438 (629)
Q Consensus 403 N~~CaDCg~~~-p~w~s~n~Gv-~lC~~CsgvHR~LG~ 438 (629)
...|..|+... |.|-.-..|. +||-.|.--.+.-|.
T Consensus 3 ~~~C~~C~~~~T~~WR~g~~g~~~LCnaCgl~~~k~~~ 40 (52)
T smart00401 3 GRSCSNCGTTETPLWRRGPSGNKTLCNACGLYYKKHGG 40 (52)
T ss_pred CCCcCCCCCCCCCccccCCCCCCcEeecccHHHHHcCC
Confidence 56899999975 7898888886 999999766655443
No 246
>PF01286 XPA_N: XPA protein N-terminal; InterPro: IPR022652 Xeroderma pigmentosum (XP) [] is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer. Skin cells of individual's with this condition are hypersensitive to ultraviolet light, due to defects in the incision step of DNA excision repair. There are a minimum of seven genetic complementation groups involved in this pathway: XP-A to XP-G. XP-A is the most severe form of the disease and is due to defects in a 30 kDa nuclear protein called XPA (or XPAC) []. The sequence of the XPA protein is conserved from higher eukaryotes [] to yeast (gene RAD14) []. XPA is a hydrophilic protein of 247 to 296 amino-acid residues which has a C4-type zinc finger motif in its central section. This entry contains the zinc-finger containing region in the XPA protein. It is found N-terminal to PF05181 from PFAM ; PDB: 1D4U_A 1XPA_A.
Probab=44.85 E-value=7.3 Score=27.83 Aligned_cols=27 Identities=26% Similarity=0.704 Sum_probs=16.7
Q ss_pred CCCCCCCCCC-CCceecccceeEecccc
Q 006831 404 NKCADCGASE-PDWASLNLGVLICIQCS 430 (629)
Q Consensus 404 ~~CaDCg~~~-p~w~s~n~Gv~lC~~Cs 430 (629)
..|-+||.+- -+|..-+|+.-||..|-
T Consensus 4 ~~C~eC~~~f~dSyL~~~F~~~VCD~CR 31 (34)
T PF01286_consen 4 PKCDECGKPFMDSYLLNNFDLPVCDKCR 31 (34)
T ss_dssp EE-TTT--EES-SSCCCCTS-S--TTT-
T ss_pred chHhHhCCHHHHHHHHHhCCcccccccc
Confidence 4799999975 47999999999999994
No 247
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=44.83 E-value=3.4e+02 Score=27.26 Aligned_cols=80 Identities=15% Similarity=0.266 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhhHHHHHHHHHHHHHHHHHH-hhhhHhhhhch--------HHHHHH
Q 006831 37 VVIEEDLHNARTSFEQARFNLVGALSNV---EAKKRFELLEAVGGTMDAHLRFF-KQGYELLHQME--------PFINQV 104 (629)
Q Consensus 37 ~E~a~eL~~aRk~f~~asldyv~~l~~v---q~kk~~e~le~l~~~~~a~~~ff-~~g~e~~~~l~--------p~~~~l 104 (629)
.++=-++-++||.|.+++-+|-.++... ..+++-+.++..-.-+.+.-.-| +...+.+..+. .+++.|
T Consensus 99 k~Dl~~vKe~kK~FdK~s~~yd~al~K~~~l~k~~k~~~~~ea~~~l~~~R~~F~~~~ldyv~~ln~~q~kKk~e~le~l 178 (202)
T cd07606 99 DTDLQEVKDARRRFDKASLDYEQARSKFLSLTKDAKPEILAAAEEDLGTTRSAFETARFDLMNRLHAADARKRVEFLERL 178 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566789999999999998866554 33344456666555555444433 44444332221 344444
Q ss_pred HHHHHHHHHhHH
Q 006831 105 LAYAQQSRECSD 116 (629)
Q Consensus 105 ~~~~q~~r~~~~ 116 (629)
..+++.+..-+.
T Consensus 179 l~~m~A~~tFF~ 190 (202)
T cd07606 179 SGSMDAHLAFFK 190 (202)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 248
>PRK11019 hypothetical protein; Provisional
Probab=44.73 E-value=4.2 Score=35.39 Aligned_cols=39 Identities=23% Similarity=0.585 Sum_probs=28.2
Q ss_pred CCCCCCCCCCCCC--CceecccceeEeccccccccccCcccc
Q 006831 402 GNNKCADCGASEP--DWASLNLGVLICIQCSGVHRNLGVHIS 441 (629)
Q Consensus 402 ~N~~CaDCg~~~p--~w~s~n~Gv~lC~~CsgvHR~LG~hiS 441 (629)
+...|.|||.+=| .+.-+. |+..|++|...+-..+.|..
T Consensus 35 syg~C~~CG~~Ip~~Rl~A~P-~a~~Cv~Cq~~~E~~~k~~~ 75 (88)
T PRK11019 35 SLTECEECGEPIPEARRKAIP-GVRLCVACQQEKDLQQAAFS 75 (88)
T ss_pred cCCeeCcCCCcCcHHHHhhcC-CccccHHHHHHHHHHHhHhc
Confidence 4579999999765 454444 78899999988765555543
No 249
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=44.50 E-value=19 Score=40.42 Aligned_cols=32 Identities=19% Similarity=0.141 Sum_probs=24.6
Q ss_pred HHHHHHHHhCCCCccccCCCCCCCCcchHHhhhh
Q 006831 555 KAVYRQIICSEPNVNAIHGQASYGKRLPLATVME 588 (629)
Q Consensus 555 ~~~~~~l~~~gadvn~~~~~~~~~t~l~la~~~~ 588 (629)
..|...|+-.|||||++... ++||||+|.+-.
T Consensus 508 ~~V~k~Llecgadvna~D~~--~ntplHIa~~~~ 539 (615)
T KOG0508|consen 508 AHVTKVLLECGADVNARDFD--NNTPLHIAAQNN 539 (615)
T ss_pred HHHHHHHHHcCCCCCcccCC--CCchhHHHHHhc
Confidence 35666777789999998654 589999997653
No 250
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=43.64 E-value=3.5e+02 Score=27.06 Aligned_cols=23 Identities=22% Similarity=0.366 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 006831 41 EDLHNARTSFEQARFNLVGALSN 63 (629)
Q Consensus 41 ~eL~~aRk~f~~asldyv~~l~~ 63 (629)
-.+-++|+.|.+++-+|-.++..
T Consensus 101 ~~vKE~kk~Fdk~s~~yd~al~k 123 (200)
T cd07603 101 KKVKESKKHFEKISDDLDNALVK 123 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44668889999998888877776
No 251
>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]
Probab=43.60 E-value=34 Score=39.19 Aligned_cols=87 Identities=22% Similarity=0.269 Sum_probs=57.4
Q ss_pred cceeEeeeeeeccCCCCCCceeEEEEEecCceEEEEeCCCCCCCcCCCcccccCCCCCCccccccccccccccCCCcccc
Q 006831 176 VQTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDE 255 (629)
Q Consensus 176 ~~~iKqGyL~Krs~~~~k~WkRRwFvL~~~glLyYy~~~~~~~~g~~~~~~~~~~~~~~~g~g~l~~~~~~~~~g~v~d~ 255 (629)
+.+.|+|+|.|+.+-+ =+||.|+|.+.+.++|+..+.....
T Consensus 449 ~~i~k~~~l~k~~~lf---~rkr~lllTn~~rll~~~~~~~~lk------------------------------------ 489 (604)
T KOG0592|consen 449 SLILKEGALEKRQGLF---ARKRMLLLTNGPRLLYVDPQNLVLK------------------------------------ 489 (604)
T ss_pred hhHHhHHHHHhhhhhh---hceeEEEecCCCeEEEEecccceec------------------------------------
Confidence 4567889999885443 3679999999888888874433211
Q ss_pred ccceeeEeecc-cceeecCCCCCCCcceEEEeeCCcEEEEEeCCHHHHHHHHHHHHHH
Q 006831 256 KSVARHTVNLL-TSTIKPDADQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGV 312 (629)
Q Consensus 256 ~~~~~~~i~l~-~~~vk~~~d~~drrfcF~Iit~~rty~LqAeSe~E~~~WI~aI~~a 312 (629)
+.|... .+.+.. .....|-|.||.|+|+|--. +.....|-.+|..+
T Consensus 490 -----~eip~~~~~~~e~-----~n~~~~~i~TP~k~~~l~d~-~~~as~w~~ai~~~ 536 (604)
T KOG0592|consen 490 -----GEIPWSPDLRVEL-----KNSSTFFIHTPNKVYYLEDP-EQRASVWCKAIETV 536 (604)
T ss_pred -----cccccCcccceee-----ccCcceEEECCccceeccCc-ccchhHHHHhhhhh
Confidence 111111 111111 22456999999999998763 45778899999887
No 252
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=43.19 E-value=3.5e+02 Score=27.16 Aligned_cols=57 Identities=16% Similarity=0.225 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHH-HHHHhhhhHhhh
Q 006831 39 IEEDLHNARTSFEQARFNLVGALSNVEA--KKRFELLEAVGGTMDAH-LRFFKQGYELLH 95 (629)
Q Consensus 39 ~a~eL~~aRk~f~~asldyv~~l~~vq~--kk~~e~le~l~~~~~a~-~~ff~~g~e~~~ 95 (629)
+=-.+-++||.|.+++-+|-.++...-. |++..-|+..-.-+.+. ..|.+...+.+.
T Consensus 99 dl~~vKe~kK~FdK~s~~~d~al~K~~~~~k~k~~e~~Ea~~~l~~~R~~F~~~~ldYV~ 158 (200)
T cd07639 99 DLRGFRDARKEFERGAESLEAALQHNAETPRRKAQEVEEAAAALLGARATFRDRALDYAL 158 (200)
T ss_pred hhHHHHHHhhhHhhcchhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344668888888888888877665432 23333344444444433 344444444443
No 253
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=43.04 E-value=17 Score=36.98 Aligned_cols=42 Identities=19% Similarity=0.100 Sum_probs=28.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCccccCCCCCCCCcchHHhhhh
Q 006831 544 QLWESVRDNDKKAVYRQIICSEPNVNAIHGQASYGKRLPLATVME 588 (629)
Q Consensus 544 ~l~~av~~~d~~~~~~~l~~~gadvn~~~~~~~~~t~l~la~~~~ 588 (629)
-|++|.+.+.+..| ++|+.+|||+..+.-. .+|+|.||+.=+
T Consensus 163 pLiWAaa~G~i~vV-~fLL~~GAdp~~lgk~--resALsLAt~gg 204 (296)
T KOG0502|consen 163 PLIWAAAKGHIPVV-QFLLNSGADPDALGKY--RESALSLATRGG 204 (296)
T ss_pred HhHHHHhcCchHHH-HHHHHcCCChhhhhhh--hhhhHhHHhcCC
Confidence 35666677777755 4556788888876433 368888887644
No 254
>PHA02917 ankyrin-like protein; Provisional
Probab=42.61 E-value=25 Score=41.57 Aligned_cols=33 Identities=15% Similarity=0.151 Sum_probs=25.1
Q ss_pred HHHHHHHHHhCCCCccccCCCCCCCCcchHHhhhh
Q 006831 554 KKAVYRQIICSEPNVNAIHGQASYGKRLPLATVME 588 (629)
Q Consensus 554 ~~~~~~~l~~~gadvn~~~~~~~~~t~l~la~~~~ 588 (629)
-..++++|+..|||||.... .|.||||+|+.-+
T Consensus 208 ~~eiv~~Li~~Gadvn~~d~--~G~TpLh~A~~~g 240 (661)
T PHA02917 208 RPEVVKCLINHGIKPSSIDK--NYCTALQYYIKSS 240 (661)
T ss_pred cHHHHHHHHHCCCCcccCCC--CCCcHHHHHHHcC
Confidence 34577788889999998643 4689999998655
No 255
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=41.87 E-value=43 Score=22.77 Aligned_cols=26 Identities=15% Similarity=0.178 Sum_probs=20.7
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCcccc
Q 006831 545 LWESVRDNDKKAVYRQIICSEPNVNAI 571 (629)
Q Consensus 545 l~~av~~~d~~~~~~~l~~~gadvn~~ 571 (629)
|+.|+..++..-+- +|+..|+|+|..
T Consensus 6 Lh~A~~~~~~~~v~-~Ll~~ga~~~~~ 31 (33)
T PF00023_consen 6 LHYAAQRGHPDIVK-LLLKHGADINAR 31 (33)
T ss_dssp HHHHHHTTCHHHHH-HHHHTTSCTTCB
T ss_pred HHHHHHHHHHHHHH-HHHHCcCCCCCC
Confidence 67888998887654 666899999975
No 256
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=41.72 E-value=26 Score=41.59 Aligned_cols=62 Identities=19% Similarity=0.253 Sum_probs=43.4
Q ss_pred HHHHHHhccCcccccCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhCCCCcccc--------CCC-CC-----------
Q 006831 517 QYIHAKYAEKIFVHKRKDHHHLLSVAQQLWESVRDNDKKAVYRQIICSEPNVNAI--------HGQ-AS----------- 576 (629)
Q Consensus 517 ~fI~~KY~~k~f~~~~~~~~~~~~~~~~l~~av~~~d~~~~~~~l~~~gadvn~~--------~~~-~~----------- 576 (629)
++|-+-|..-.|..- -.|+-||...|.+-|. +|++.|||||+- .++ ..
T Consensus 171 ~lind~~~~eeY~Gq-----------SaLHiAIv~~~~~~V~-lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~Y 238 (782)
T KOG3676|consen 171 KLINDIYTSEEYYGQ-----------SALHIAIVNRDAELVR-LLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFY 238 (782)
T ss_pred HHhhhhhhhHhhcCc-----------chHHHHHHhccHHHHH-HHHHcCCchhhHhhccccCcccccccccccCCcceee
Confidence 456666655555542 2477899999999886 556899999972 222 22
Q ss_pred -CCCcchHHhhhhhh
Q 006831 577 -YGKRLPLATVMEME 590 (629)
Q Consensus 577 -~~t~l~la~~~~~~ 590 (629)
|+.||.+|+=+.|+
T Consensus 239 fGEyPLSfAAC~nq~ 253 (782)
T KOG3676|consen 239 FGEYPLSFAACTNQP 253 (782)
T ss_pred eccCchHHHHHcCCH
Confidence 68999999877763
No 257
>cd07662 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transforming growth factor-beta family. It also plays
Probab=41.45 E-value=3.1e+02 Score=27.93 Aligned_cols=79 Identities=14% Similarity=0.166 Sum_probs=58.7
Q ss_pred hhhhHhHHHHHHHHHHhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHh
Q 006831 9 AFNGDGNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRFFK 88 (629)
Q Consensus 9 ~Fe~~q~kyd~~~~ky~slsk~k~~~~~~E~a~eL~~aRk~f~~asldyv~~l~~vq~kk~~e~le~l~~~~~a~~~ff~ 88 (629)
.|+-++..-+.++++ + .-+.+.+..+.+++..|.+.|=--=..|..++.++-.+|=..++.|+.......+
T Consensus 134 ~~enA~k~L~KaR~~------~---kev~~aE~~~~~a~~~Fe~IS~~aK~El~rF~~~Rv~~Fkk~Lv~y~E~~lkhak 204 (218)
T cd07662 134 DYENANKALDKARAK------N---KDVLQAETTQQLCCQKFEKISESAKQELIDFKTRRVAAFRKNLVELAELELKHAK 204 (218)
T ss_pred HHHHHHHHHHHHHHc------C---ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777776666 1 2246677788999999999886555677888888877888888888888877777
Q ss_pred hhhHhhhh
Q 006831 89 QGYELLHQ 96 (629)
Q Consensus 89 ~g~e~~~~ 96 (629)
..++++.+
T Consensus 205 ~~~~~~~~ 212 (218)
T cd07662 205 GNLQLLQS 212 (218)
T ss_pred HHHHHHHH
Confidence 77776643
No 258
>KOG4305 consensus RhoGEF GTPase [Signal transduction mechanisms]
Probab=41.27 E-value=79 Score=39.05 Aligned_cols=38 Identities=24% Similarity=0.234 Sum_probs=31.0
Q ss_pred eEEEeeCCcEEEEEeCCHHHHHHHHHHHHHHHHHHhcc
Q 006831 282 CFRIISPTKVYTLQAENTLDQMDWIEKINGVIASLLSF 319 (629)
Q Consensus 282 cF~Iit~~rty~LqAeSe~E~~~WI~aI~~aI~~~l~~ 319 (629)
.|.+..-+..|+|.|++..+++.|+++|..+-...++.
T Consensus 655 ~~~~ga~~~~ftly~~s~~~r~~w~ekI~~aq~~~le~ 692 (1029)
T KOG4305|consen 655 LYLGGARGASFTLYAESLNGRDQWVEKIKQAQKRSLER 692 (1029)
T ss_pred heeccccceEEEeeccchHHhhhHHhhhhHHHHhhhhh
Confidence 34444455799999999999999999999988777765
No 259
>PRK00085 recO DNA repair protein RecO; Reviewed
Probab=41.04 E-value=13 Score=37.93 Aligned_cols=32 Identities=28% Similarity=0.574 Sum_probs=26.9
Q ss_pred ccCCCCCCCCCCCCC-CceecccceeEeccccc
Q 006831 400 VYGNNKCADCGASEP-DWASLNLGVLICIQCSG 431 (629)
Q Consensus 400 ~p~N~~CaDCg~~~p-~w~s~n~Gv~lC~~Csg 431 (629)
.|.-..|+-||.+.. .|.+..-|-++|..|..
T Consensus 146 ~p~l~~C~~Cg~~~~~~~f~~~~gg~~c~~c~~ 178 (247)
T PRK00085 146 GLDLDHCAVCGAPGDHRYFSPKEGGAVCSECGD 178 (247)
T ss_pred ccchhhHhcCCCCCCceEEecccCCcccccccC
Confidence 355679999999865 78899999999999973
No 260
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=40.77 E-value=2.3e+02 Score=29.34 Aligned_cols=83 Identities=13% Similarity=0.195 Sum_probs=62.3
Q ss_pred hhhHhHHHHHHHHHHhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhh
Q 006831 10 FNGDGNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRFFKQ 89 (629)
Q Consensus 10 Fe~~q~kyd~~~~ky~slsk~k~~~~~~E~a~eL~~aRk~f~~asldyv~~l~~vq~kk~~e~le~l~~~~~a~~~ff~~ 89 (629)
=|.-|-+|++..+- +.+++ +-++..+.++.+..+.++-..=+..-.+...+.-|..||-..+.++-+.|..||..
T Consensus 155 RdqkQ~d~E~l~E~-l~~rr----e~~~kLe~~ie~~~~~ve~f~~~~~~E~~~Fe~~K~~e~k~~l~~~Ad~~i~fy~~ 229 (240)
T cd07667 155 RDQVQAEYEAKLEA-VALRK----EERPKVPTDVEKCQDRVECFNADLKADMERWQNNKRQDFRQLLMGMADKNIQYYEK 229 (240)
T ss_pred HHHHHHHHHHHHHH-HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36667788775554 44422 22456666777777777766767788999999999999999999999999999999
Q ss_pred hhHhhhhc
Q 006831 90 GYELLHQM 97 (629)
Q Consensus 90 g~e~~~~l 97 (629)
..+..+.+
T Consensus 230 ~~~~We~~ 237 (240)
T cd07667 230 CLTAWESI 237 (240)
T ss_pred HHHHHHHH
Confidence 76665543
No 261
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=40.41 E-value=28 Score=37.90 Aligned_cols=43 Identities=16% Similarity=0.098 Sum_probs=33.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCccccCCCCCCCCcchHHhhhh
Q 006831 543 QQLWESVRDNDKKAVYRQIICSEPNVNAIHGQASYGKRLPLATVME 588 (629)
Q Consensus 543 ~~l~~av~~~d~~~~~~~l~~~gadvn~~~~~~~~~t~l~la~~~~ 588 (629)
-.|.-||..+.+.-|- +|++.|||||.-.. +|.|+|..|++=|
T Consensus 342 TALMLAVSHGr~d~vk-~LLacgAdVNiQDd--DGSTALMCA~EHG 384 (452)
T KOG0514|consen 342 TALMLAVSHGRVDMVK-ALLACGADVNIQDD--DGSTALMCAAEHG 384 (452)
T ss_pred hhhhhhhhcCcHHHHH-HHHHccCCCccccC--CccHHHhhhhhhC
Confidence 3577799999888765 44577999998655 4789999998777
No 262
>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote
Probab=40.29 E-value=3.9e+02 Score=27.04 Aligned_cols=80 Identities=13% Similarity=0.210 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhhHHHHHHHHHHHHHHHH-HHhhhhHhhhhch--------HHHHHHHH
Q 006831 39 IEEDLHNARTSFEQARFNLVGALSN---VEAKKRFELLEAVGGTMDAHLR-FFKQGYELLHQME--------PFINQVLA 106 (629)
Q Consensus 39 ~a~eL~~aRk~f~~asldyv~~l~~---vq~kk~~e~le~l~~~~~a~~~-ff~~g~e~~~~l~--------p~~~~l~~ 106 (629)
+=-+.-++|+.|.+++=+|..++.. +..+|+-.-++..-..+.+.-. |.+-..+.+-++. .+++-++.
T Consensus 105 dl~~~Ke~KK~FdK~se~~~~Al~K~~~ls~kkk~~e~~EA~~~l~~~r~~F~~~sLdYv~qin~lQ~rKKfe~le~ll~ 184 (207)
T cd07635 105 QLGAVKEEKKKFDKETEKNYSLLEKHLNLSAKKKEPQLQEADVQVEQNRQHFYELSLEYVCKLQEIQERKKFECVEPMLS 184 (207)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345668899999999999998887 6555544344554444444444 4444444333221 45555555
Q ss_pred HHHHHHHhHHHH
Q 006831 107 YAQQSRECSDYE 118 (629)
Q Consensus 107 ~~q~~r~~~~~~ 118 (629)
+++.+..-+...
T Consensus 185 ~m~a~~tffhqG 196 (207)
T cd07635 185 FFQGVFTFYHQG 196 (207)
T ss_pred HHHHHHHHHHhH
Confidence 555555544443
No 263
>PHA02730 ankyrin-like protein; Provisional
Probab=39.93 E-value=37 Score=40.14 Aligned_cols=46 Identities=13% Similarity=0.070 Sum_probs=32.7
Q ss_pred hHHHHHHHHHhcCC--HHHHHHHHHhCCCCccccCCCCCCCCcchHHhhhh
Q 006831 540 SVAQQLWESVRDND--KKAVYRQIICSEPNVNAIHGQASYGKRLPLATVME 588 (629)
Q Consensus 540 ~~~~~l~~av~~~d--~~~~~~~l~~~gadvn~~~~~~~~~t~l~la~~~~ 588 (629)
.+...|..=+..+| -..+..+|+..|||||.. ..+.||||.|+...
T Consensus 342 ~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdIN~k---~~G~TpLH~Aa~~n 389 (672)
T PHA02730 342 IVQAMLINYLHYGDMVSIPILRCMLDNGATMDKT---TDNNYPLHDYFVNN 389 (672)
T ss_pred HHHHHHHHHHhcCCcCcHHHHHHHHHCCCCCCcC---CCCCcHHHHHHHHc
Confidence 34444556667665 356778888999999973 46789999886544
No 264
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=39.84 E-value=22 Score=42.33 Aligned_cols=33 Identities=15% Similarity=0.046 Sum_probs=26.3
Q ss_pred HHHHHHHHHhCCCCccccCCCCCCCCcchHHhhhh
Q 006831 554 KKAVYRQIICSEPNVNAIHGQASYGKRLPLATVME 588 (629)
Q Consensus 554 ~~~~~~~l~~~gadvn~~~~~~~~~t~l~la~~~~ 588 (629)
..+++++|+..|+|||.... .+.||||+||.-.
T Consensus 133 ~~s~L~~Ll~~~~dvnl~de--~~~TpLh~A~~~~ 165 (929)
T KOG0510|consen 133 NYSCLKLLLDYGADVNLEDE--NGFTPLHLAARKN 165 (929)
T ss_pred hHHHHHHHHHhcCCcccccc--CCCchhhHHHhcC
Confidence 34567788899999998643 4689999999887
No 265
>COG1381 RecO Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair]
Probab=39.12 E-value=12 Score=38.66 Aligned_cols=30 Identities=27% Similarity=0.605 Sum_probs=26.5
Q ss_pred cCCCCCCCCCCCCC-CceecccceeEecccc
Q 006831 401 YGNNKCADCGASEP-DWASLNLGVLICIQCS 430 (629)
Q Consensus 401 p~N~~CaDCg~~~p-~w~s~n~Gv~lC~~Cs 430 (629)
|.=..||.||.+.+ ...|.-.|-++|.+|.
T Consensus 152 ~~l~~Ca~cg~~~~~~~~s~~~~~~~C~~~~ 182 (251)
T COG1381 152 PNLTSCARCGTPVDPVYFSPKSGGFLCSKCA 182 (251)
T ss_pred cchHHHhCcCCcCCCcceeeccCcccchhcc
Confidence 45678999999865 7999999999999998
No 266
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=39.09 E-value=34 Score=40.43 Aligned_cols=45 Identities=13% Similarity=0.111 Sum_probs=33.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCCCccccCCCCCCCCcchHHhhhh
Q 006831 541 VAQQLWESVRDNDKKAVYRQIICSEPNVNAIHGQASYGKRLPLATVME 588 (629)
Q Consensus 541 ~~~~l~~av~~~d~~~~~~~l~~~gadvn~~~~~~~~~t~l~la~~~~ 588 (629)
+...|+.++..+|+..+ ++|+..|+|+|.... .+.||||+|+..+
T Consensus 82 ~~~~L~~aa~~G~~~~v-k~LL~~Gadin~~d~--~G~TpLh~Aa~~g 126 (664)
T PTZ00322 82 LTVELCQLAASGDAVGA-RILLTGGADPNCRDY--DGRTPLHIACANG 126 (664)
T ss_pred hHHHHHHHHHcCCHHHH-HHHHHCCCCCCCcCC--CCCcHHHHHHHCC
Confidence 34568888888998875 455678999987643 4689999998766
No 267
>PHA02989 ankyrin repeat protein; Provisional
Probab=36.56 E-value=36 Score=38.37 Aligned_cols=33 Identities=6% Similarity=-0.099 Sum_probs=24.7
Q ss_pred HHHHHHHHHhCCCCccccCCCCCCCCcchHHhhhh
Q 006831 554 KKAVYRQIICSEPNVNAIHGQASYGKRLPLATVME 588 (629)
Q Consensus 554 ~~~~~~~l~~~gadvn~~~~~~~~~t~l~la~~~~ 588 (629)
...++++|+..|||+|.... .+.||||.|..-.
T Consensus 87 ~~~iv~~Ll~~Gadin~~d~--~g~tpL~~a~~~~ 119 (494)
T PHA02989 87 IKKIVKLLLKFGADINLKTF--NGVSPIVCFIYNS 119 (494)
T ss_pred HHHHHHHHHHCCCCCCCCCC--CCCcHHHHHHHhc
Confidence 35677788888998887643 5888998887664
No 268
>PF00320 GATA: GATA zinc finger; InterPro: IPR000679 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents GATA-type zinc fingers (Znf). A number of transcription factors (including erythroid-specific transcription factor and nitrogen regulatory proteins), specifically bind the DNA sequence (A/T)GATA(A/G) [] in the regulatory regions of genes. They are consequently termed GATA-binding transcription factors. The interactions occur via highly-conserved Znf domains in which the zinc ion is coordinated by 4 cysteine residues [, ]. NMR studies have shown the core of the Znf to comprise 2 irregular anti-parallel beta-sheets and an alpha-helix, followed by a long loop to the C-terminal end of the finger. The N-terminal part, which includes the helix, is similar in structure, but not sequence, to the N-terminal zinc module of the glucocorticoid receptor DNA-binding domain. The helix and the loop connecting the 2 beta-sheets interact with the major groove of the DNA, while the C-terminal tail wraps around into the minor groove. It is this tail that is the essential determinant of specific binding. Interactions between the Znf and DNA are mainly hydrophobic, explaining the preponderance of thymines in the binding site; a large number of interactions with the phosphate backbone have also been observed []. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 3GAT_A 2GAT_A 1GAU_A 1GAT_A 1Y0J_A 1GNF_A 2L6Z_A 2L6Y_A 3DFV_D 3DFX_B ....
Probab=36.53 E-value=14 Score=26.46 Aligned_cols=31 Identities=29% Similarity=0.789 Sum_probs=22.2
Q ss_pred CCCCCCCC-CCceeccccee-Eecccccccccc
Q 006831 406 CADCGASE-PDWASLNLGVL-ICIQCSGVHRNL 436 (629)
Q Consensus 406 CaDCg~~~-p~w~s~n~Gv~-lC~~CsgvHR~L 436 (629)
|..|+... |.|-....|-. ||-.|---+|..
T Consensus 1 C~~C~tt~t~~WR~~~~g~~~LCn~Cg~~~kk~ 33 (36)
T PF00320_consen 1 CSNCGTTETPQWRRGPNGNRTLCNACGLYYKKY 33 (36)
T ss_dssp -TTT--ST-SSEEEETTSEE-EEHHHHHHHHHH
T ss_pred CcCCcCCCCchhhcCCCCCCHHHHHHHHHHHHh
Confidence 88999975 89998888888 999996555543
No 269
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=36.39 E-value=4.7e+02 Score=26.45 Aligned_cols=81 Identities=15% Similarity=0.262 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhhHHHHHHHHHHHHHHHHHHhh-hhHhhhhch--------HHHHHHH
Q 006831 38 VIEEDLHNARTSFEQARFNLVGALSN---VEAKKRFELLEAVGGTMDAHLRFFKQ-GYELLHQME--------PFINQVL 105 (629)
Q Consensus 38 E~a~eL~~aRk~f~~asldyv~~l~~---vq~kk~~e~le~l~~~~~a~~~ff~~-g~e~~~~l~--------p~~~~l~ 105 (629)
++=-++-++|+.|.+++-+|..++.. +..+|+-..++..-.-+++.-+-|++ ..+.+-.+. .+++-++
T Consensus 104 ~dl~~~ke~kk~FdK~se~~~~al~k~~~lsk~kk~~~~~ea~~~l~~~r~~f~~~~l~Yv~~l~~vq~rKkfefle~ll 183 (207)
T cd07602 104 EQIGGAKEEKKKFDKETEKFCSSLEKHLNLSTKKKENQLQEADAQLDMERRNFHQASLEYVFKLQEVQERKKFEFVETLL 183 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456678899999999999998887 33444345555555555555444444 333332221 4555555
Q ss_pred HHHHHHHHhHHHH
Q 006831 106 AYAQQSRECSDYE 118 (629)
Q Consensus 106 ~~~q~~r~~~~~~ 118 (629)
.+++.+..-+...
T Consensus 184 ~~m~a~~tff~qG 196 (207)
T cd07602 184 SFMYGWLTFYHQG 196 (207)
T ss_pred HHHHHHHHHHHhH
Confidence 6565555555443
No 270
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=35.07 E-value=40 Score=35.58 Aligned_cols=42 Identities=17% Similarity=0.181 Sum_probs=30.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCccccCCCCCCCCcchHHhhhh
Q 006831 544 QLWESVRDNDKKAVYRQIICSEPNVNAIHGQASYGKRLPLATVME 588 (629)
Q Consensus 544 ~l~~av~~~d~~~~~~~l~~~gadvn~~~~~~~~~t~l~la~~~~ 588 (629)
-|.++.+.+...-+ ..|+..|+.||.++--. .||||||++-+
T Consensus 37 plhwaakegh~aiv-emll~rgarvn~tnmgd--dtplhlaaahg 78 (448)
T KOG0195|consen 37 PLHWAAKEGHVAIV-EMLLSRGARVNSTNMGD--DTPLHLAAAHG 78 (448)
T ss_pred hhhhhhhcccHHHH-HHHHhcccccccccCCC--Ccchhhhhhcc
Confidence 36677777776544 46668899999986432 59999998766
No 271
>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain
Probab=34.93 E-value=5e+02 Score=26.31 Aligned_cols=98 Identities=16% Similarity=0.280 Sum_probs=55.5
Q ss_pred hhhHhHHHHHHHHHHhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--HhhhhHHHHHHHHHHHHHHHH-
Q 006831 10 FNGDGNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSN-V--EAKKRFELLEAVGGTMDAHLR- 85 (629)
Q Consensus 10 Fe~~q~kyd~~~~ky~slsk~k~~~~~~E~a~eL~~aRk~f~~asldyv~~l~~-v--q~kk~~e~le~l~~~~~a~~~- 85 (629)
++.++.-.-.-++.|+ .++=-.+-++||.|.+++-+|..++.. + ..+++-.-++.+-.-+.+.-+
T Consensus 87 ~~~~~~~l~~pL~~f~-----------k~dl~~vKe~kK~FDK~se~y~~aleK~l~l~~~kk~~~~~ea~~~l~~~R~~ 155 (207)
T cd07634 87 IQNANDVLIAPLEKFR-----------KEQIGAAKDGKKKFDKESEKYYSILEKHLNLSAKKKESHLQRADTQIDREHQN 155 (207)
T ss_pred HHHHHHHHHHHHHHHH-----------HHHHHHHHHHccchhHHHhHHHHHHHHHHhccccCCccHHHHHHHHHHHHHHH
Confidence 4444444444455543 334445678999999999999998876 3 334433455555555555444
Q ss_pred HHhhhhHhhhhch--------HHHHHHHHHHHHHHHhHHHH
Q 006831 86 FFKQGYELLHQME--------PFINQVLAYAQQSRECSDYE 118 (629)
Q Consensus 86 ff~~g~e~~~~l~--------p~~~~l~~~~q~~r~~~~~~ 118 (629)
|.+...+.+-++. .+++.|..+++.+..-+...
T Consensus 156 F~~~~ldYv~~i~~vq~kKkfefle~ll~~~~A~~tff~qG 196 (207)
T cd07634 156 FYEASLEYVFKIQEVQEKKKFEFVEPLLAFLQGLFTFYHEG 196 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4444455443322 45555555555555544433
No 272
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=34.75 E-value=57 Score=39.03 Aligned_cols=55 Identities=13% Similarity=0.244 Sum_probs=38.1
Q ss_pred EeecccceeecCC-CCCCCcceEEEeeCC---cEEEEEeCCHHHHHHHHHHHHHHHHHH
Q 006831 262 TVNLLTSTIKPDA-DQSDLRFCFRIISPT---KVYTLQAENTLDQMDWIEKINGVIASL 316 (629)
Q Consensus 262 ~i~l~~~~vk~~~-d~~drrfcF~Iit~~---rty~LqAeSe~E~~~WI~aI~~aI~~~ 316 (629)
..++..+.+...+ ...++-|.|.|.... -.|.|.|++.+|..+|+.+|+.+...+
T Consensus 855 i~d~~~~nvv~~~q~~n~~~~vf~l~~~~~~~~~~~~aadsqEe~~eW~k~i~E~t~~a 913 (1267)
T KOG1264|consen 855 ILDLNTYNVVKAPQGKNQKSFVFILEPKWQGKPPVEFAADSQEELFEWFKSIREITWKA 913 (1267)
T ss_pred cccccccceeecccccCCcceEEEechhhhcCCceEEecCchHHHHHHHHHHHHHHHHh
Confidence 3344444433222 334677888886433 578999999999999999999886544
No 273
>cd05395 RasGAP_RASA4 Ras GTPase activating-like 4 protein (RASAL4), also known as Ca2+ -promoted Ras inactivator (CAPRI), is a member of the GAP1 family. Members of the GAP1 family are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. RASAL4, like RASAL, is a cytosolic protein that undergoes a rapid translocation to the plasma membrane in response to a receptor-mediated elevation in the concentration of intracellular free Ca2+ ([Ca2+]i). However, unlike RASAL, RASAL4 does not sense oscillations in [Ca2+]i.
Probab=34.72 E-value=27 Score=37.81 Aligned_cols=25 Identities=28% Similarity=0.728 Sum_probs=17.7
Q ss_pred eEeeeee-eccCC----CCCCceeEEEEEe
Q 006831 179 IKQGYLS-KRSSN----LRADWKRRFFVLD 203 (629)
Q Consensus 179 iKqGyL~-Krs~~----~~k~WkRRwFvL~ 203 (629)
.|+|.++ ||..+ ..+.||+|||.|.
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 331 (337)
T cd05395 302 VKEGFLFLHRTKGKGPLMTSPFKKLYFTLT 331 (337)
T ss_pred HHHHHHHHHhccCCCCccccchhhheeeee
Confidence 4677666 65433 3368999999997
No 274
>PF04192 Utp21: Utp21 specific WD40 associated putative domain ; InterPro: IPR007319 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp21 is a component of the SSU processome, which is required for pre-18S rRNA processing. It interacts with Utp18 [].; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=34.60 E-value=2.8e+02 Score=28.59 Aligned_cols=59 Identities=19% Similarity=0.250 Sum_probs=33.4
Q ss_pred HHHHHhhhhHHHHHHHHH-HHHHHHHHHhhhhHhhhhchHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 006831 61 LSNVEAKKRFELLEAVGG-TMDAHLRFFKQGYELLHQMEPFINQVLAYAQQSRECSDYEQASLHQRMQ 127 (629)
Q Consensus 61 l~~vq~kk~~e~le~l~~-~~~a~~~ff~~g~e~~~~l~p~~~~l~~~~q~~r~~~~~~~~~L~~~m~ 127 (629)
...++.+++||+++..+. |+..|...-....+ + .+|...+..|++....+-..|.+.++
T Consensus 167 ~~~L~~~~dfElvQa~l~vFLk~Hgd~i~~~~~------~--~~L~~~l~~l~~~q~~~w~~L~~l~~ 226 (237)
T PF04192_consen 167 TYRLKSRRDFELVQAYLSVFLKVHGDVIMESEE------E--EELREALEELREAQESEWKRLDDLFQ 226 (237)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHcCCc------h--HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456789999999887664 33433333222111 1 55556666666666555555555443
No 275
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=34.18 E-value=43 Score=39.95 Aligned_cols=45 Identities=13% Similarity=0.038 Sum_probs=33.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCccccCC------------CCCCCCcchHHhhhhh
Q 006831 544 QLWESVRDNDKKAVYRQIICSEPNVNAIHG------------QASYGKRLPLATVMEM 589 (629)
Q Consensus 544 ~l~~av~~~d~~~~~~~l~~~gadvn~~~~------------~~~~~t~l~la~~~~~ 589 (629)
.|+-|+..++.+.+ ++|+..|||||.... ...++||||+|+..++
T Consensus 131 pLhlAa~~~~~eiV-klLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~ 187 (743)
T TIGR00870 131 ALHLAAHRQNYEIV-KLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGS 187 (743)
T ss_pred HHHHHHHhCCHHHH-HHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCC
Confidence 37778898887755 566789999996421 1247899999998774
No 276
>PHA02917 ankyrin-like protein; Provisional
Probab=33.63 E-value=36 Score=40.31 Aligned_cols=38 Identities=24% Similarity=0.233 Sum_probs=17.1
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCccccCCCCCCCCcchHHh
Q 006831 545 LWESVRDNDKKAVYRQIICSEPNVNAIHGQASYGKRLPLAT 585 (629)
Q Consensus 545 l~~av~~~d~~~~~~~l~~~gadvn~~~~~~~~~t~l~la~ 585 (629)
|+.|+..++.+.+ ++|+..|||+|.... .+.||||+|.
T Consensus 456 Lh~Aa~~~~~~~v-~~Ll~~GAdin~~d~--~G~T~L~~A~ 493 (661)
T PHA02917 456 LHKAVRYNKQSLV-SLLLESGSDVNIRSN--NGYTCIAIAI 493 (661)
T ss_pred HHHHHHcCCHHHH-HHHHHCcCCCCCCCC--CCCCHHHHHH
Confidence 3344444444332 233455555555432 2455555554
No 277
>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain
Probab=32.45 E-value=5.1e+02 Score=26.39 Aligned_cols=63 Identities=13% Similarity=0.107 Sum_probs=47.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhHhhh
Q 006831 33 MDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRFFKQGYELLH 95 (629)
Q Consensus 33 ~~~~~E~a~eL~~aRk~f~~asldyv~~l~~vq~kk~~e~le~l~~~~~a~~~ff~~g~e~~~ 95 (629)
+.-+.+++....++++.|++.+=--=..|..++.++--+|=..++.|...+....+..++++.
T Consensus 150 ~~~v~~AE~~~~~a~~~Fe~iS~~~k~El~rF~~~Rv~~fk~~lve~aE~~ik~Ak~~~~~l~ 212 (219)
T cd07621 150 NKDVHAAEAAQQEACEKFESMSESAKQELLDFKTRRVAAFRKNLVELAELEIKHAKAQIQLLK 212 (219)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344577778889999999988855556777888887778888888888877777776666554
No 278
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=31.71 E-value=35 Score=38.80 Aligned_cols=42 Identities=17% Similarity=0.023 Sum_probs=24.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCccccCCCCCCCCcchHHhhhh
Q 006831 544 QLWESVRDNDKKAVYRQIICSEPNVNAIHGQASYGKRLPLATVME 588 (629)
Q Consensus 544 ~l~~av~~~d~~~~~~~l~~~gadvn~~~~~~~~~t~l~la~~~~ 588 (629)
-|+-||..+|+.++-.+| ..|||+-.-+. .|.+|||.|+..+
T Consensus 58 pLhlAV~Lg~~~~a~~Ll-~a~Adv~~kN~--~gWs~L~EAv~~g 99 (560)
T KOG0522|consen 58 PLHLAVRLGHVEAARILL-SAGADVSIKNN--EGWSPLHEAVSTG 99 (560)
T ss_pred cHHHHHHhcCHHHHHHHH-hcCCCcccccc--ccccHHHHHHHcC
Confidence 355566666666654333 45666644332 3566677666666
No 279
>cd07631 BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. APPL1 interacts with diverse receptors (e.g. NGF receptor TrkA, FSHR, adiponectin receptors) and signaling proteins (e.g. Akt, PI3K), and may function as an adaptor linked to many distinct signaling pathways. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invo
Probab=31.16 E-value=5.8e+02 Score=25.98 Aligned_cols=113 Identities=10% Similarity=0.150 Sum_probs=68.7
Q ss_pred hhhHhHHHHHHHHHHhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhhHHHH-H-HHHHHHHHHH
Q 006831 10 FNGDGNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNV---EAKKRFELL-E-AVGGTMDAHL 84 (629)
Q Consensus 10 Fe~~q~kyd~~~~ky~slsk~k~~~~~~E~a~eL~~aRk~f~~asldyv~~l~~v---q~kk~~e~l-e-~l~~~~~a~~ 84 (629)
++.++.....-+++|. .|+--+.-++|+.|.+++=+|..++..- ..+|+-+.+ + ..-...-+..
T Consensus 85 ~~q~~~sl~~pL~~F~-----------kedL~~~Ke~KK~FdK~Se~~d~Al~K~a~lsk~K~~E~~~eea~~~v~~tR~ 153 (215)
T cd07631 85 STQLADAMMFPITQFK-----------ERDLKEILTLKEVFQIASNDHDAAINRYSRLSKRRENEKVKYEVTEDVYTSRK 153 (215)
T ss_pred HHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHH
Confidence 4444444444455543 4455667899999999999999887654 455656655 2 2222222444
Q ss_pred HHHhhhhHhhhhc--------hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 006831 85 RFFKQGYELLHQM--------EPFINQVLAYAQQSRECSDYEQASLHQRMQDYLKQI 133 (629)
Q Consensus 85 ~ff~~g~e~~~~l--------~p~~~~l~~~~q~~r~~~~~~~~~L~~~m~~~k~qi 133 (629)
.|.+-..+.+-.+ -.+++-++.+++.+..-+.....-|.+++..+..++
T Consensus 154 ~F~~~aLdYv~qLn~lQ~rKKfefLe~lLs~m~A~~tFFhqG~e~L~~dl~~f~~~l 210 (215)
T cd07631 154 KQHQTMMHYFCALNTLQYKKKIALLEPLLGYMQAQISFFKMGSENLNEQLEEFLTNI 210 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4444444433222 267777888888887777776665666666666554
No 280
>cd07645 I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. BAIAP2L1 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1) is also known as IRTKS (Insulin Receptor Tyrosine Kinase Substrate). It is widely expressed, serves as a substrate for the insulin receptor, and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. BAIAP2L1 expression leads to the formation of short actin bundles, distinct from filopodia-like protrusions induced by the expression of the related protein IRSp53. It contains an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The IMD domain of
Probab=31.14 E-value=4.8e+02 Score=26.67 Aligned_cols=43 Identities=26% Similarity=0.281 Sum_probs=32.3
Q ss_pred HHHHHHhhhhHHHH-HHHHHHHHHHHHHHhhhhHhhhhchHHHH
Q 006831 60 ALSNVEAKKRFELL-EAVGGTMDAHLRFFKQGYELLHQMEPFIN 102 (629)
Q Consensus 60 ~l~~vq~kk~~e~l-e~l~~~~~a~~~ff~~g~e~~~~l~p~~~ 102 (629)
.-..+++++||-|| +.-+++......|+.+|.+++.+=-|-|.
T Consensus 178 k~AL~EErRRycFlvdkhC~~~~~~~~yh~k~~~lL~~klp~Wq 221 (226)
T cd07645 178 REALLEEKRRFCFLVDKHCSFSNHIHYFHQQAAELLNSKLPVWQ 221 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHH
Confidence 44457788888774 57788999999999999999866444443
No 281
>COG2174 RPL34A Ribosomal protein L34E [Translation, ribosomal structure and biogenesis]
Probab=30.92 E-value=27 Score=30.48 Aligned_cols=35 Identities=26% Similarity=0.579 Sum_probs=24.8
Q ss_pred HHHhccCCCCCCCCCCCC-------C-Cc---------eecccceeEecccc
Q 006831 396 LLRRVYGNNKCADCGASE-------P-DW---------ASLNLGVLICIQCS 430 (629)
Q Consensus 396 ~l~~~p~N~~CaDCg~~~-------p-~w---------~s~n~Gv~lC~~Cs 430 (629)
..++.|+-..|++||.+- | +. .+-.||-.+|..|.
T Consensus 27 ~~kK~~~~p~C~~cg~pL~Gi~r~RP~e~~r~skt~krp~RpYGG~lc~~c~ 78 (93)
T COG2174 27 YEKKKPTIPKCAICGRPLGGIPRGRPREFRRLSKTKKRPERPYGGYLCANCV 78 (93)
T ss_pred eeeccCCCCcccccCCccCCccCCCcHHHHhccccccCcCCCcCceecHHHH
Confidence 346778889999999951 1 11 23458889999985
No 282
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=30.30 E-value=7.3e+02 Score=26.84 Aligned_cols=66 Identities=12% Similarity=0.035 Sum_probs=49.2
Q ss_pred HhHHHHHHHHHHhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 006831 13 DGNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGG 78 (629)
Q Consensus 13 ~q~kyd~~~~ky~slsk~k~~~~~~E~a~eL~~aRk~f~~asldyv~~l~~vq~kk~~e~le~l~~ 78 (629)
..+.|+.-..+|++..----+.-.++--.+|+.+-..|+.++.+|...++.+..+---++.+.+.+
T Consensus 154 ~~~~~~~~~~~~L~~P~lG~~Re~q~~~~~l~~a~~~yq~a~~ey~~~~~~~~~ks~e~~~~~l~~ 219 (320)
T TIGR01834 154 GDQLYRKNLSSFLSMPALGYSREMQSQLQRLFRDWMEYQQAMADYQLLEADIGYKSFAALMSDLLA 219 (320)
T ss_pred HHHHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357788888899987765555445667778889999999999999999999876654444444443
No 283
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=29.53 E-value=81 Score=26.68 Aligned_cols=42 Identities=17% Similarity=0.145 Sum_probs=27.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCccccCCCCCCCCcchHHhhhh
Q 006831 544 QLWESVRDNDKKAVYRQIICSEPNVNAIHGQASYGKRLPLATVME 588 (629)
Q Consensus 544 ~l~~av~~~d~~~~~~~l~~~gadvn~~~~~~~~~t~l~la~~~~ 588 (629)
.|..++..++++- +..|+..|+++|... ..+.||+|.|...+
T Consensus 43 ~l~~a~~~~~~~~-~~~ll~~~~~~~~~~--~~~~~~l~~a~~~~ 84 (126)
T cd00204 43 PLHLAAKNGHLEI-VKLLLEKGADVNARD--KDGNTPLHLAARNG 84 (126)
T ss_pred HHHHHHHcCCHHH-HHHHHHcCCCccccC--CCCCCHHHHHHHcC
Confidence 4566777777744 445556777777654 34568888876654
No 284
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=29.18 E-value=1.7e+02 Score=33.24 Aligned_cols=67 Identities=18% Similarity=0.402 Sum_probs=39.1
Q ss_pred cCCCCCCCCCCCC-CCceecc---cceeEecccccc-ccccCcccceeeEee--cCCCcCChhHHHHHhhcChhHHH
Q 006831 401 YGNNKCADCGASE-PDWASLN---LGVLICIQCSGV-HRNLGVHISKVRSLT--LDVKVWEPSVLNLFQSLGNIYAN 470 (629)
Q Consensus 401 p~N~~CaDCg~~~-p~w~s~n---~Gv~lC~~Csgv-HR~LG~hiSkVrSl~--lD~~~w~~~~l~~~~~~GN~~~N 470 (629)
..|..|--||..+ -.|.|-+ .-.-+|..|-.. |-..+ .+|+.=. ++...++.+-..+|..+|-+.+|
T Consensus 259 ~d~~~c~~cg~~~H~q~~cp~r~~~~~n~c~~cg~~gH~~~d---c~~~~q~~~~~~~~~d~ey~~lm~e~~~a~~~ 332 (554)
T KOG0119|consen 259 DDNRACRNCGSTGHKQYDCPGRIPNTTNVCKICGPLGHISID---CKVNDQQMPMSSANFDREYASLMLELGHATSL 332 (554)
T ss_pred cccccccccCCCccccccCCcccccccccccccCCccccccc---CCCcccccchhhhccCHHHHhhhccccchhcC
Confidence 3578999999987 3454322 222278888643 32211 2333333 33234778888899888855554
No 285
>PHA00080 DksA-like zinc finger domain containing protein
Probab=29.16 E-value=14 Score=30.84 Aligned_cols=32 Identities=22% Similarity=0.690 Sum_probs=23.2
Q ss_pred cCCCCCCCCCCCCC--CceecccceeEeccccccc
Q 006831 401 YGNNKCADCGASEP--DWASLNLGVLICIQCSGVH 433 (629)
Q Consensus 401 p~N~~CaDCg~~~p--~w~s~n~Gv~lC~~CsgvH 433 (629)
++...|-+||.+=| .|.-+. |+..|++|...+
T Consensus 29 ~~~~~C~~Cg~~Ip~~Rl~a~P-~~~~Cv~Cq~~~ 62 (72)
T PHA00080 29 PSATHCEECGDPIPEARREAVP-GCRTCVSCQEIL 62 (72)
T ss_pred CCCCEecCCCCcCcHHHHHhCC-CccCcHHHHHHH
Confidence 45668999999755 444333 688899998764
No 286
>cd07646 I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Insulin Receptor tyrosine kinase Substrate p53. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. IRSp53 (Insulin Receptor tyrosine kinase Substrate p53) is also known as BAIAP2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2). It is a scaffolding protein that takes part in many signaling pathways including Cdc42-induced filopodia formation, Rac-mediated lamellipodia extension, and spine morphogenesis. IRSp53 exists as multiple splicing variants that differ mainly at the C-termini. One variant (T-form) is expressed exclusively in human breast cancer cells. The gene encoding IRSp53 is a putative susceptibility gene for Gilles de la Tourette syndrome. IRSp53 contains an N-terminal IMD, a CRIB (Cdc42 and Rac interactive binding motif), an SH3 domain, and a WASP
Probab=28.91 E-value=6.6e+02 Score=25.88 Aligned_cols=44 Identities=23% Similarity=0.308 Sum_probs=33.1
Q ss_pred HHHHHHHhhhhHHHH-HHHHHHHHHHHHHHhhhhHhhhhchHHHH
Q 006831 59 GALSNVEAKKRFELL-EAVGGTMDAHLRFFKQGYELLHQMEPFIN 102 (629)
Q Consensus 59 ~~l~~vq~kk~~e~l-e~l~~~~~a~~~ff~~g~e~~~~l~p~~~ 102 (629)
+.-..+++++||-|| +.-+++......|...|.+++.+=-|-+.
T Consensus 179 ~k~Al~EErRRycflvdk~C~~~~~~~~yh~k~~~lL~~kl~~Wq 223 (232)
T cd07646 179 YKTALTEERRRYCFLVEKQCAVAKNSIAYHSKGKELLTQKLPSWQ 223 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence 345567888888774 57788999999999999998866444443
No 287
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=28.70 E-value=75 Score=29.99 Aligned_cols=45 Identities=13% Similarity=0.124 Sum_probs=28.9
Q ss_pred HHHHHHhcCCH----HHHHHHHHhCCC--CccccCCCCCCCCcchHHhhhhh
Q 006831 544 QLWESVRDNDK----KAVYRQIICSEP--NVNAIHGQASYGKRLPLATVMEM 589 (629)
Q Consensus 544 ~l~~av~~~d~----~~~~~~l~~~ga--dvn~~~~~~~~~t~l~la~~~~~ 589 (629)
.|..|+..+.. ..+.+.|+..|+ +++.... ..+.||||.|+..+.
T Consensus 109 ~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~-~~g~tpl~~A~~~~~ 159 (235)
T COG0666 109 PLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRD-EDGNTPLHWAALNGD 159 (235)
T ss_pred HHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccC-CCCCchhHHHHHcCc
Confidence 35556666662 344556667888 4554423 357899999988874
No 288
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=28.54 E-value=40 Score=33.50 Aligned_cols=39 Identities=18% Similarity=0.095 Sum_probs=22.2
Q ss_pred HHhcCCHHHHHHHHHhCCCCccccCCCCCCCCcchHHhhhh
Q 006831 548 SVRDNDKKAVYRQIICSEPNVNAIHGQASYGKRLPLATVME 588 (629)
Q Consensus 548 av~~~d~~~~~~~l~~~gadvn~~~~~~~~~t~l~la~~~~ 588 (629)
|+..++.+-|-.+|-.+|+|||.+.-. |.|+||+|+.-+
T Consensus 79 a~s~g~~evVk~Ll~r~~advna~tn~--G~T~LHyAagK~ 117 (226)
T KOG4412|consen 79 AASNGNDEVVKELLNRSGADVNATTNG--GQTCLHYAAGKG 117 (226)
T ss_pred hhhcCcHHHHHHHhcCCCCCcceecCC--CcceehhhhcCC
Confidence 444444443333333458888876543 568888886655
No 289
>KOG3362 consensus Predicted BBOX Zn-finger protein [General function prediction only]
Probab=28.54 E-value=22 Score=33.58 Aligned_cols=34 Identities=26% Similarity=0.598 Sum_probs=26.3
Q ss_pred cCCCCCCCCCCCCCCceecccceeEec-cccccccc
Q 006831 401 YGNNKCADCGASEPDWASLNLGVLICI-QCSGVHRN 435 (629)
Q Consensus 401 p~N~~CaDCg~~~p~w~s~n~Gv~lC~-~CsgvHR~ 435 (629)
|--..|+-|| -..-+.++|.|.-.|. .|-++|..
T Consensus 116 P~r~fCaVCG-~~S~ysC~~CG~kyCsv~C~~~Hne 150 (156)
T KOG3362|consen 116 PLRKFCAVCG-YDSKYSCVNCGTKYCSVRCLKTHNE 150 (156)
T ss_pred CcchhhhhcC-CCchhHHHhcCCceeechhhhhccc
Confidence 4457999999 4556999999998885 68888843
No 290
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=28.41 E-value=59 Score=28.27 Aligned_cols=32 Identities=19% Similarity=0.537 Sum_probs=25.3
Q ss_pred hccCCCCCCCCCCCCCCceecccceeEecccccc
Q 006831 399 RVYGNNKCADCGASEPDWASLNLGVLICIQCSGV 432 (629)
Q Consensus 399 ~~p~N~~CaDCg~~~p~w~s~n~Gv~lC~~Csgv 432 (629)
....-..|..|+.+ .---+..||..|..|--.
T Consensus 31 ~~~~~~~Cp~C~~~--~VkR~a~GIW~C~kCg~~ 62 (89)
T COG1997 31 QQRAKHVCPFCGRT--TVKRIATGIWKCRKCGAK 62 (89)
T ss_pred HHhcCCcCCCCCCc--ceeeeccCeEEcCCCCCe
Confidence 44567899999998 455778899999999544
No 291
>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It
Probab=28.20 E-value=6.6e+02 Score=25.64 Aligned_cols=60 Identities=12% Similarity=0.120 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhHhhh
Q 006831 36 AVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRFFKQGYELLH 95 (629)
Q Consensus 36 ~~E~a~eL~~aRk~f~~asldyv~~l~~vq~kk~~e~le~l~~~~~a~~~ff~~g~e~~~ 95 (629)
+.+++..+.++.+.|++-|=--=..|..++.++--+|=..++.|+.......+..++++.
T Consensus 152 v~~aE~~~~ea~~~Fe~IS~~~k~El~rF~~~Rv~~Fk~~lve~~E~~ik~ak~~~~~~~ 211 (218)
T cd07663 152 VKQAEAHQQECCQKFEKLSESAKQELISFKRRRVAAFRKNLIEMTELEIKHAKNNVSLLQ 211 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777888899999888855556777777777777777788887777777777666554
No 292
>cd07685 F-BAR_Fes The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), is a cytoplasmic (or nonreceptor) tyrosine kinase whose gene was first isolated from tumor-causing retroviruses. It is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells, and plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. Fes kinase has also been implicated as a tumor suppressor in colorectal cancer. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane def
Probab=28.11 E-value=5.2e+02 Score=26.73 Aligned_cols=59 Identities=15% Similarity=0.132 Sum_probs=33.3
Q ss_pred hhhhhHhHHHHHHHHHHhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006831 8 VAFNGDGNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKR 69 (629)
Q Consensus 8 ~~Fe~~q~kyd~~~~ky~slsk~k~~~~~~E~a~eL~~aRk~f~~asldyv~~l~~vq~kk~ 69 (629)
+.|+..-..+.+++.||..-++.|+-+-++ +-+..+++|.+ .+-=+||++|+..+.-++
T Consensus 138 k~Y~~~c~~~e~AR~K~ekas~~K~~~K~~--EKy~~m~~KL~-~~hN~YlL~I~~An~~kd 196 (237)
T cd07685 138 SQYRSLAKDSAQAKRKYQEASKDKDRDKAK--EKYVKSLWKLY-ALHNEYVLAVRAAQLHHQ 196 (237)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchhHHHHH--HHHHHHHHHHH-hhhhHHHHHHHHHHHHHH
Confidence 456666666667777777766555433332 22233334433 333477888887776655
No 293
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=27.84 E-value=6.8e+02 Score=25.67 Aligned_cols=57 Identities=16% Similarity=0.105 Sum_probs=32.7
Q ss_pred hhhhhHhHHHHHHHHHHhcccCCCCcchHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhhh
Q 006831 8 VAFNGDGNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSF-------EQARFNLVGALSNVEAKKR 69 (629)
Q Consensus 8 ~~Fe~~q~kyd~~~~ky~slsk~k~~~~~~E~a~eL~~aRk~f-------~~asldyv~~l~~vq~kk~ 69 (629)
+.|+++.....+++.||-...+..+.. ..++..+|..| +.+.=||+.+|+.....+.
T Consensus 133 k~Y~~~~~e~e~Ar~k~e~a~~~~~~~-----~~~~eKak~k~~~~~~k~~~akNeY~l~l~~aN~~q~ 196 (237)
T cd07657 133 SEYQKLLEDYKAAKSKFEEAVVKGGRG-----GRKLDKARDKYQKACRKLHLCHNDYVLALLEAQEHEE 196 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccc-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888887665433211 22334444444 4445566666666554444
No 294
>KOG4047 consensus Docking protein 1 (p62dok) [Signal transduction mechanisms]
Probab=27.47 E-value=37 Score=37.91 Aligned_cols=28 Identities=14% Similarity=0.101 Sum_probs=22.3
Q ss_pred ceeEeeeeeeccCCC-CCCceeEEEEEec
Q 006831 177 QTIKQGYLSKRSSNL-RADWKRRFFVLDS 204 (629)
Q Consensus 177 ~~iKqGyL~Krs~~~-~k~WkRRwFvL~~ 204 (629)
..+|+|+++.+..++ .+.|.++|++|.+
T Consensus 7 ~~~k~g~~~~~~~r~~~k~~~~~~~~L~~ 35 (429)
T KOG4047|consen 7 CLVKDGVPDNHRNKFKVKNVRDDGAELGS 35 (429)
T ss_pred cccccCccchhhhhhccccccccceeeec
Confidence 457899999876653 3689999999974
No 295
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=27.12 E-value=3e+02 Score=33.30 Aligned_cols=102 Identities=16% Similarity=0.007 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhcccCCCCcchHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhH
Q 006831 15 NFVLQAREKFLSLRKSTRMDVAV--VIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRFFKQGYE 92 (629)
Q Consensus 15 ~kyd~~~~ky~slsk~k~~~~~~--E~a~eL~~aRk~f~~asldyv~~l~~vq~kk~~e~le~l~~~~~a~~~ff~~g~e 92 (629)
++|+.+++-..+++.+.=.-.++ +++.+-..++-.|.+.- ...+..|++||++++.++. |..-|.
T Consensus 795 ~~~~~~~~~L~~~~psaiD~eiRsL~d~~~~~~~~~~Fi~~l------~~~l~~k~nFEL~qa~~sl-------f~K~H~ 861 (910)
T KOG1539|consen 795 KDFLDAFALLKNLSPSAIDFEIRSLNDAGETIEEMVIFIKML------TQMLKTKRNFELVQAYMSL-------FLKSHG 861 (910)
T ss_pred ccHHHHHHHHHhcCcchheeehhhhhccCcchHHHHHHHHHH------HHHhccccCHHHHHHHHHH-------HHHhhh
Confidence 47877777777777555111111 13333344455554332 3445688999987765543 344444
Q ss_pred hhhhchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 006831 93 LLHQMEPFINQVLAYAQQSRECSDYEQASLHQRMQDY 129 (629)
Q Consensus 93 ~~~~l~p~~~~l~~~~q~~r~~~~~~~~~L~~~m~~~ 129 (629)
..-...|+-++|...+|+|.+.+.++=..|+++....
T Consensus 862 ~~l~~~~~~~dl~e~l~~~~~v~~e~wq~le~l~~~~ 898 (910)
T KOG1539|consen 862 LVLWNHEGPEDLTEELQNWEEVQSEEWQRLEELFLYC 898 (910)
T ss_pred hhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4433345555578888888887777766666665443
No 296
>PHA02792 ankyrin-like protein; Provisional
Probab=25.89 E-value=67 Score=37.79 Aligned_cols=29 Identities=10% Similarity=-0.090 Sum_probs=13.6
Q ss_pred HHHHHhCCCCccccCCCCCCCCcchHHhhhh
Q 006831 558 YRQIICSEPNVNAIHGQASYGKRLPLATVME 588 (629)
Q Consensus 558 ~~~l~~~gadvn~~~~~~~~~t~l~la~~~~ 588 (629)
+.+|+..|||||.... .+.||||.|+..+
T Consensus 393 lklLIs~GADIN~kD~--~G~TPLh~Aa~~~ 421 (631)
T PHA02792 393 LKLCKPYIDDINKIDK--HGRSILYYCIESH 421 (631)
T ss_pred HHHHHhcCCccccccc--cCcchHHHHHHcC
Confidence 3344445555554322 2455555555443
No 297
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=24.74 E-value=7.9e+02 Score=25.47 Aligned_cols=80 Identities=10% Similarity=0.121 Sum_probs=52.3
Q ss_pred hhHhHHHHHHHHHHhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhh
Q 006831 11 NGDGNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRFFKQG 90 (629)
Q Consensus 11 e~~q~kyd~~~~ky~slsk~k~~~~~~E~a~eL~~aRk~f~~asldyv~~l~~vq~kk~~e~le~l~~~~~a~~~ff~~g 90 (629)
+.+|..|+...+--.... ++. .++..++.+.-..=++++=++=..+...+..|.-+|-..+++|+..+..++.++
T Consensus 159 ~~~Q~~le~k~e~l~k~~----~dr-~~~~~ev~~~e~kve~a~~~~k~e~~Rf~~~k~~D~k~~~~~yae~~i~~~~~~ 233 (243)
T cd07666 159 DQIQAELDSKVEALANKK----ADR-DLLKEEIEKLEDKVECANNALKADWERWKQNMQTDLRSAFTDMAENNISYYEEC 233 (243)
T ss_pred HHHHHHHHHHHHHHHhhh----hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777876665544422 221 233444444444444445555577888888888899999999999999999887
Q ss_pred hHhhh
Q 006831 91 YELLH 95 (629)
Q Consensus 91 ~e~~~ 95 (629)
....+
T Consensus 234 ~~~We 238 (243)
T cd07666 234 LATWE 238 (243)
T ss_pred HHHHH
Confidence 55443
No 298
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=24.57 E-value=34 Score=24.42 Aligned_cols=30 Identities=23% Similarity=0.535 Sum_probs=15.1
Q ss_pred CCCCCCCCCCCCcee---cccceeEecccccccc
Q 006831 404 NKCADCGASEPDWAS---LNLGVLICIQCSGVHR 434 (629)
Q Consensus 404 ~~CaDCg~~~p~w~s---~n~Gv~lC~~CsgvHR 434 (629)
+.|..||.+- .+.. -+.==.+|..|.-||-
T Consensus 1 kfC~~CG~~l-~~~ip~gd~r~R~vC~~Cg~IhY 33 (34)
T PF14803_consen 1 KFCPQCGGPL-ERRIPEGDDRERLVCPACGFIHY 33 (34)
T ss_dssp -B-TTT--B--EEE--TT-SS-EEEETTTTEEE-
T ss_pred CccccccChh-hhhcCCCCCccceECCCCCCEEe
Confidence 4688999862 2211 1344578999999883
No 299
>PTZ00332 paraflagellar rod protein; Provisional
Probab=24.45 E-value=1.1e+03 Score=27.04 Aligned_cols=69 Identities=12% Similarity=0.014 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhHhh-hhchHHHHHHHHHHHH
Q 006831 37 VVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRFFKQGYELL-HQMEPFINQVLAYAQQ 110 (629)
Q Consensus 37 ~E~a~eL~~aRk~f~~asldyv~~l~~vq~kk~~e~le~l~~~~~a~~~ff~~g~e~~-~~l~p~~~~l~~~~q~ 110 (629)
++.++.|...++.|+.+==+|+..+.++.+||--. +..++.+.++++..-|.. +.|.|..++.....+.
T Consensus 412 q~L~elll~V~ke~Le~FR~lYltlGeL~yKKErR-----LEeLDRqIR~~hiqrE~amETlDPNAKkyseakke 481 (589)
T PTZ00332 412 QDLAALRLQVHKEHLEYFRMLYLTLGSLIYKKEKR-----LEEIDRNIRTTHIQLEFCVETFDPNAKKHADMKKE 481 (589)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHH
Confidence 67788888889999999889999999999998633 355677777777777755 6788888777765443
No 300
>PF07189 SF3b10: Splicing factor 3B subunit 10 (SF3b10); InterPro: IPR009846 This family consists of several eukaryotic splicing factor 3B subunit 5 (SF3b5) proteins. SF3b5 is a 10 kDa subunit of the splicing factor SF3b. SF3b associates with the splicing factor SF3a and a 12S RNA unit to form the U2 small nuclear ribonucleoproteins complex. SF3b5 and SF3b14b are also thought to facilitate the interaction of U2 with the branch site []. Also included in this entry is RDS3 complex subunit 10, another protein involved in mRNA splicing [].
Probab=24.34 E-value=2.1e+02 Score=24.45 Aligned_cols=61 Identities=16% Similarity=0.141 Sum_probs=42.8
Q ss_pred HhHHHHHHHHHHhcccCCCCcchHHHHHHHHHHHHHHH-----HHHHHHHH-HHHHHHHhhhhHHHHHHHH
Q 006831 13 DGNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSF-----EQARFNLV-GALSNVEAKKRFELLEAVG 77 (629)
Q Consensus 13 ~q~kyd~~~~ky~slsk~k~~~~~~E~a~eL~~aRk~f-----~~asldyv-~~l~~vq~kk~~e~le~l~ 77 (629)
.+..|+++..||..+-.... ...+-.....|-.| +...|.|+ ++.++-..+.++.||+.|+
T Consensus 5 ~~~qle~Lq~KY~GtG~~dT----Tk~EW~tnihRDT~aS~~gH~~lL~Y~aia~ne~~~r~r~~ll~kM~ 71 (79)
T PF07189_consen 5 IQQQLEHLQSKYVGTGHADT----TKEEWLTNIHRDTYASIIGHPDLLEYFAIAENESKARVRFNLLEKMV 71 (79)
T ss_pred HHHHHHHHHHHhCCCCCCCc----CHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 56789999999999764332 22455555666666 56777776 4666667888888888775
No 301
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=24.11 E-value=8e+02 Score=25.24 Aligned_cols=57 Identities=9% Similarity=0.075 Sum_probs=28.3
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHh
Q 006831 32 RMDVAVVIEEDLHNARTSFEQARFNL-------VGALSNVEAKKRFELLEAVGGTMDAHLRFFK 88 (629)
Q Consensus 32 ~~~~~~E~a~eL~~aRk~f~~asldy-------v~~l~~vq~kk~~e~le~l~~~~~a~~~ff~ 88 (629)
+++.+..+..++.++.+..+++..+| -..|..++..|--+|=..+..|+.++...-+
T Consensus 157 ~~dK~~~a~~Ev~e~e~k~~~a~~~fe~is~~ik~El~rFe~er~~Dfk~~v~~fles~ie~qk 220 (234)
T cd07665 157 KPDKLQQAKDEIAEWESRVTQYERDFERISATVRKEVIRFEKEKSKDFKNHIIKYLETLLHSQQ 220 (234)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666666665555554444333 2344444444444444444444444444433
No 302
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=23.73 E-value=78 Score=35.78 Aligned_cols=38 Identities=18% Similarity=0.276 Sum_probs=17.1
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCccccCCCCCCCCcchHHh
Q 006831 545 LWESVRDNDKKAVYRQIICSEPNVNAIHGQASYGKRLPLAT 585 (629)
Q Consensus 545 l~~av~~~d~~~~~~~l~~~gadvn~~~~~~~~~t~l~la~ 585 (629)
||.|..++.++ ++++|+..||+||-+.-. ..|||--||
T Consensus 88 LWaAsaAGHl~-vVk~L~~~ga~VN~tT~T--NStPLraAC 125 (615)
T KOG0508|consen 88 LWAASAAGHLE-VVKLLLRRGASVNDTTRT--NSTPLRAAC 125 (615)
T ss_pred hhHHhccCcHH-HHHHHHHhcCcccccccc--CCccHHHHH
Confidence 45454444444 233444555555544332 235554444
No 303
>cd07644 I-BAR_IMD_BAIAP2L2 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 2. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. This group is composed of uncharacterized proteins known as BAIAP2L2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 2). They contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The related proteins, BAIAP2L1 and IRSp53, function as regulators of membrane dynamics and the actin cytoskeleton. The IMD domain binds and bundles actin filaments, binds membranes and produces membrane protrusions, and interacts with the small GTPase Rac.
Probab=23.36 E-value=6.6e+02 Score=25.52 Aligned_cols=41 Identities=20% Similarity=0.298 Sum_probs=30.1
Q ss_pred HHHHHHHhhhhHHHHH-HHHHHHHHHHHHHhhhhHhhhhchH
Q 006831 59 GALSNVEAKKRFELLE-AVGGTMDAHLRFFKQGYELLHQMEP 99 (629)
Q Consensus 59 ~~l~~vq~kk~~e~le-~l~~~~~a~~~ff~~g~e~~~~l~p 99 (629)
..-..++++++|-||. .-..+-.....|...|.+++.+--|
T Consensus 168 ~k~Al~eErRRy~Flvek~c~~~k~~~~yh~ka~~ll~~kl~ 209 (215)
T cd07644 168 QRAAELEEKRRYRFLAEKHYLLNNTFLQFQSRARGMLQTRVP 209 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 5667788999998865 5556667777888888888865333
No 304
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=23.32 E-value=82 Score=37.81 Aligned_cols=34 Identities=32% Similarity=0.652 Sum_probs=26.9
Q ss_pred ceeEeeeeeeccCCCCCCceeEEEEEecCceEEEEe
Q 006831 177 QTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYR 212 (629)
Q Consensus 177 ~~iKqGyL~Krs~~~~k~WkRRwFvL~~~glLyYy~ 212 (629)
..+|+|.|+.+... .+.|.+.||||.+ ..|+|..
T Consensus 474 nsvk~GiLy~kd~v-dheWt~h~fvlt~-~kl~ys~ 507 (1267)
T KOG1264|consen 474 NSVKQGILYMKDPV-DHEWTRHYFVLTD-AKLSYSD 507 (1267)
T ss_pred hhhhcceEEEecCC-CCceeeeEEEEec-ceeEeeh
Confidence 34799999999665 4889999999985 4566664
No 305
>smart00290 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger.
Probab=22.81 E-value=51 Score=24.78 Aligned_cols=24 Identities=33% Similarity=0.764 Sum_probs=17.1
Q ss_pred CCCCCCCCCCCceecccceeEecc
Q 006831 405 KCADCGASEPDWASLNLGVLICIQ 428 (629)
Q Consensus 405 ~CaDCg~~~p~w~s~n~Gv~lC~~ 428 (629)
+|.+|+..+.-|+++..|-..|..
T Consensus 1 ~C~~C~~~~~l~~CL~C~~~~c~~ 24 (50)
T smart00290 1 RCSVCGTIENLWLCLTCGQVGCGR 24 (50)
T ss_pred CcccCCCcCCeEEecCCCCcccCC
Confidence 599999887777766655555543
No 306
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=22.69 E-value=57 Score=34.80 Aligned_cols=30 Identities=23% Similarity=0.663 Sum_probs=21.5
Q ss_pred CCCCCCCCCCCCCceecccceeEeccccccc
Q 006831 403 NNKCADCGASEPDWASLNLGVLICIQCSGVH 433 (629)
Q Consensus 403 N~~CaDCg~~~p~w~s~n~Gv~lC~~CsgvH 433 (629)
...|.+||..+.-. .-.-|-++|.+|--|-
T Consensus 11 ~~~Cp~Cg~~~iv~-d~~~Ge~vC~~CG~Vl 40 (310)
T PRK00423 11 KLVCPECGSDKLIY-DYERGEIVCADCGLVI 40 (310)
T ss_pred CCcCcCCCCCCeeE-ECCCCeEeecccCCcc
Confidence 45899999753311 2367999999998764
No 307
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=22.48 E-value=57 Score=26.35 Aligned_cols=27 Identities=22% Similarity=0.560 Sum_probs=22.3
Q ss_pred CCCCCCCCCCCCCceecccceeEeccccc
Q 006831 403 NNKCADCGASEPDWASLNLGVLICIQCSG 431 (629)
Q Consensus 403 N~~CaDCg~~~p~w~s~n~Gv~lC~~Csg 431 (629)
-+.|..||..... ..+--++.|..|--
T Consensus 28 Sq~C~~CG~~~~~--~~~~r~~~C~~Cg~ 54 (69)
T PF07282_consen 28 SQTCPRCGHRNKK--RRSGRVFTCPNCGF 54 (69)
T ss_pred ccCccCccccccc--ccccceEEcCCCCC
Confidence 4689999998877 67778999999843
No 308
>PF01258 zf-dskA_traR: Prokaryotic dksA/traR C4-type zinc finger; InterPro: IPR000962 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents domains identified in zinc finger-containing members of the DksA/TraR family. DksA is a critical component of the rRNA transcription initiation machinery that potentiates the regulation of rRNA promoters by ppGpp and the initiating NTP. In delta-dksA mutants, rRNA promoters are unresponsive to changes in amino acid availability, growth rate, or growth phase. In vitro, DksA binds to RNAP, reduces open complex lifetime, inhibits rRNA promoter activity, and amplifies effects of ppGpp and the initiating NTP on rRNA transcription [, ]. The dksA gene product suppresses the temperature-sensitive growth and filamentation of a dnaK deletion mutant of Escherichia coli. Gene knockout [] and deletion [] experiments have shown the gene to be non-essential, mutations causing a mild sensitivity to UV light, but not affecting DNA recombination []. In Pseudomonas aeruginosa, dksA is a novel regulator involved in the post-transcriptional control of extracellular virulence factor production []. The proteins contain a C-terminal region thought to fold into a 4-cysteine zinc finger. Other proteins found to contain a similar zinc finger domain include: the traR gene products encoded on the E. coli F and R100 plasmids [, ] the traR gene products encoded on Salmonella spp. plasmids pED208 and pSLT the dnaK suppressor hypothetical proteins from bacteria and bacteriophage FHL4, LIM proteins from Homo sapiens (Human) and Mus musculus (Mouse) [] More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2GVI_A 2KQ9_A 2KGO_A 1TJL_I.
Probab=22.32 E-value=9.1 Score=27.30 Aligned_cols=29 Identities=28% Similarity=0.744 Sum_probs=16.3
Q ss_pred CCCCCCCCCCC-ceecccceeEeccccccc
Q 006831 405 KCADCGASEPD-WASLNLGVLICIQCSGVH 433 (629)
Q Consensus 405 ~CaDCg~~~p~-w~s~n~Gv~lC~~CsgvH 433 (629)
.|.+||.+=|. =.-+.-|..+|+.|...|
T Consensus 5 ~C~~CGe~I~~~Rl~~~p~~~~C~~C~~~~ 34 (36)
T PF01258_consen 5 ICEDCGEPIPEERLVAVPGATLCVECQERR 34 (36)
T ss_dssp B-TTTSSBEEHHHHHHCTTECS-HHHHHHH
T ss_pred CccccCChHHHHHHHhCCCcEECHHHhCcc
Confidence 49999986331 112223788899997654
No 309
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=21.50 E-value=99 Score=38.81 Aligned_cols=41 Identities=15% Similarity=0.138 Sum_probs=31.2
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCccccCCCCCCCCcchHHhhhh
Q 006831 545 LWESVRDNDKKAVYRQIICSEPNVNAIHGQASYGKRLPLATVME 588 (629)
Q Consensus 545 l~~av~~~d~~~~~~~l~~~gadvn~~~~~~~~~t~l~la~~~~ 588 (629)
|..|+..+... +..+|+.+||+||+..- .+.||||.|.+++
T Consensus 577 LH~Aa~~G~~~-i~~LLlk~GA~vna~d~--~g~TpL~iA~~lg 617 (1143)
T KOG4177|consen 577 LHQAAQQGHND-IAELLLKHGASVNAADL--DGFTPLHIAVRLG 617 (1143)
T ss_pred hhHHHHcChHH-HHHHHHHcCCCCCcccc--cCcchhHHHHHhc
Confidence 45577776444 45577899999999644 4689999999988
No 310
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=21.22 E-value=64 Score=30.74 Aligned_cols=36 Identities=25% Similarity=0.634 Sum_probs=25.1
Q ss_pred chHHHHHhccCCCCCCCCCCCCCCceecccceeEecccccccccc
Q 006831 392 KPIDLLRRVYGNNKCADCGASEPDWASLNLGVLICIQCSGVHRNL 436 (629)
Q Consensus 392 ~~~~~l~~~p~N~~CaDCg~~~p~w~s~n~Gv~lC~~CsgvHR~L 436 (629)
+.++.+....+...|.-||.. +-++|..|.|-|+.+
T Consensus 88 ~lL~~~~~~~~~~~C~~Cgg~---------rfv~C~~C~Gs~k~~ 123 (147)
T cd03031 88 KLLKGIRARAGGGVCEGCGGA---------RFVPCSECNGSCKVF 123 (147)
T ss_pred HHHhhcccccCCCCCCCCCCc---------CeEECCCCCCcceEE
Confidence 344444344456679999854 567899999999875
No 311
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=21.10 E-value=71 Score=34.11 Aligned_cols=31 Identities=23% Similarity=0.529 Sum_probs=24.8
Q ss_pred HHHhccCCCCCCCCCCCCCCceecccceeEeccccccc
Q 006831 396 LLRRVYGNNKCADCGASEPDWASLNLGVLICIQCSGVH 433 (629)
Q Consensus 396 ~l~~~p~N~~CaDCg~~~p~w~s~n~Gv~lC~~CsgvH 433 (629)
.+...|.| .|..||.....| ..+|..|.+.|
T Consensus 348 ~~~~~p~~-~c~~cg~~~~~~------~~~c~~c~~~~ 378 (389)
T PRK11788 348 QLKRKPRY-RCRNCGFTARTL------YWHCPSCKAWE 378 (389)
T ss_pred HHhCCCCE-ECCCCCCCCccc------eeECcCCCCcc
Confidence 34555665 599999999999 47899999987
No 312
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=21.07 E-value=8.6e+02 Score=24.51 Aligned_cols=116 Identities=11% Similarity=0.132 Sum_probs=0.0
Q ss_pred hhhhhhhHhHHHHHHHHHHhcccCCC----------------------CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006831 6 FTVAFNGDGNFVLQAREKFLSLRKST----------------------RMDVAVVIEEDLHNARTSFEQARFNLVGALSN 63 (629)
Q Consensus 6 ~~~~Fe~~q~kyd~~~~ky~slsk~k----------------------~~~~~~E~a~eL~~aRk~f~~asldyv~~l~~ 63 (629)
+...|+.....|+.+..+=..++..- .++.-+.-..+|..+|..|.+ ++.+|..
T Consensus 62 Le~~Y~~ln~~ye~s~~~A~~V~~RI~~vE~Va~ALF~EWe~EL~~Y~~~sLR~~S~~kL~~tr~~Y~~----L~~aM~~ 137 (201)
T PF11172_consen 62 LEDKYNALNDEYESSEDAAEEVSDRIDAVEDVADALFDEWEQELDQYSNASLRRASEQKLAETRRRYAQ----LIKAMRR 137 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHhh--hhHhhhhchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 006831 64 VEAKKRFELLEAVGGTMDAHLRFFKQ--GYELLHQMEPFINQVLAYAQQSRECSDYEQASLHQRMQDYL 130 (629)
Q Consensus 64 vq~kk~~e~le~l~~~~~a~~~ff~~--g~e~~~~l~p~~~~l~~~~q~~r~~~~~~~~~L~~~m~~~k 130 (629)
.+.+.. |++..++-+.-|-+. ....+..|.+.+..+...+.......+....+...-+..++
T Consensus 138 Ae~km~-----PVL~~~~D~vL~LKHNLNA~AI~sL~~e~~~~~~di~~Li~~m~~sI~ead~FI~~l~ 201 (201)
T PF11172_consen 138 AESKMQ-----PVLAAFRDQVLYLKHNLNAQAIASLQGEFSSIESDISQLIKEMERSIAEADAFIASLE 201 (201)
T ss_pred HHHhcC-----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
No 313
>PRK13715 conjugal transfer protein TraR; Provisional
Probab=20.75 E-value=17 Score=30.51 Aligned_cols=33 Identities=24% Similarity=0.642 Sum_probs=22.0
Q ss_pred CCCCCCCCCCCCCCc-eecccceeEecccccccc
Q 006831 402 GNNKCADCGASEPDW-ASLNLGVLICIQCSGVHR 434 (629)
Q Consensus 402 ~N~~CaDCg~~~p~w-~s~n~Gv~lC~~CsgvHR 434 (629)
+...|.|||.+=|.= .-.--|+..|++|...+-
T Consensus 33 ~~~~C~~Cg~~Ip~~Rl~a~p~~~~Cv~Cq~~~E 66 (73)
T PRK13715 33 PVYLCEACGNPIPEARRKIFPGVTLCVECQAYQE 66 (73)
T ss_pred CcccHhhcCCcCCHHHHhcCCCcCCCHHHHHHHH
Confidence 345899999975521 112237899999987553
No 314
>cd07160 NR_DBD_LXR DNA-binding domain of Liver X receptors (LXRs) family is composed of two C4-type zinc fingers. DNA-binding domain of Liver X receptors (LXRs) family is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. LXR interacts with specific DNA sites upstream of the target gene and modulates the rate of transcriptional initiation. LXR operates as cholesterol sensor which protects cells from cholesterol overload by stimulating reverse cholesterol transport from peripheral tissues to the liver and its excretion in the bile. Oxidized cholesterol derivatives or oxysterols were identified as specific ligands for LXRs. LXR functions as a heterodimer with the retinoid X receptor (RXR) which may be activated by either LXR agonist or 9-cis retinoic acid, a specific RXR ligand. The LXR/RXR complex binds to a liver X receptor response element (LXRE) in the promoter region of target genes. The ideal LXRE seq
Probab=20.34 E-value=60 Score=28.98 Aligned_cols=31 Identities=35% Similarity=0.841 Sum_probs=25.7
Q ss_pred CCCCCCCCCCCCCCceecccceeEeccccccccc
Q 006831 402 GNNKCADCGASEPDWASLNLGVLICIQCSGVHRN 435 (629)
Q Consensus 402 ~N~~CaDCg~~~p~w~s~n~Gv~lC~~CsgvHR~ 435 (629)
++..|.=||.+.. ...||+..|..|.+..|-
T Consensus 17 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 47 (101)
T cd07160 17 GNEVCSVCGDKAS---GFHYNVLSCEGCKGFFRR 47 (101)
T ss_pred CCCCCeecCCcCc---ceEECcceehhhhhhhhh
Confidence 5678999998654 468999999999998874
No 315
>PHA02792 ankyrin-like protein; Provisional
Probab=20.08 E-value=1.2e+02 Score=35.64 Aligned_cols=40 Identities=10% Similarity=0.151 Sum_probs=30.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCccccCCCCCCCCcchHHhh
Q 006831 544 QLWESVRDNDKKAVYRQIICSEPNVNAIHGQASYGKRLPLATV 586 (629)
Q Consensus 544 ~l~~av~~~d~~~~~~~l~~~gadvn~~~~~~~~~t~l~la~~ 586 (629)
.|+-|+..++.+.+ .+|+..|||+|.... .+.||||+|..
T Consensus 413 PLh~Aa~~~n~eiv-elLLs~GADIN~kD~--~G~TpL~~A~~ 452 (631)
T PHA02792 413 ILYYCIESHSVSLV-EWLIDNGADINITTK--YGSTCIGICVI 452 (631)
T ss_pred hHHHHHHcCCHHHH-HHHHHCCCCCCCcCC--CCCCHHHHHHH
Confidence 46778888777655 566789999998654 46899999965
Done!