BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006832
(629 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZVZ|B Chain B, Phd Finger Of Human Uhrf1
Length = 57
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 235 HHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFC 289
H C C R+ PD + +CD C+ AFH CLDPPL + + W+C C
Sbjct: 2 HMRVCACHLCGGRQD-PDKQL-MCD-ECDMAFHIYCLDPPLSSVPSEDEWYCPEC 53
>pdb|1MM2|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b
pdb|2L75|A Chain A, Solution Structure Of Chd4-Phd2 In Complex With H3k9me3
Length = 61
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 232 GSVHHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCEC 291
GS HH C CK D +LC TC ++H CL+PPL E + W C C C
Sbjct: 4 GSDHHMEF-CRVCK------DGGELLCCDTCPSSYHIHCLNPPL-PEIPNGEWLCPRCTC 55
>pdb|3SHB|A Chain A, Crystal Structure Of Phd Domain Of Uhrf1
Length = 77
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 241 CAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFC 289
C C R+ PD + +CD C+ AFH CLDPPL + + W+C C
Sbjct: 29 CHLCGGRQD-PDKQL-MCD-ECDMAFHIYCLDPPLSSVPSEDEWYCPEC 74
>pdb|3T6R|A Chain A, Structure Of Uhrf1 In Complex With Unmodified H3
N-Terminal Tail
pdb|3T6R|B Chain B, Structure Of Uhrf1 In Complex With Unmodified H3
N-Terminal Tail
Length = 72
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 241 CAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFC 289
C C R+ PD + +CD C+ AFH CLDPPL + + W+C C
Sbjct: 26 CHLCGGRQD-PDKQL-MCD-ECDMAFHIYCLDPPLSSVPSEDEWYCPEC 71
>pdb|2LGG|A Chain A, Structure Of Phd Domain Of Uhrf1 In Complex With H3
Peptide
pdb|2LGK|A Chain A, Nmr Structure Of Uhrf1 Phd Domains In A Complex With
Histone H3 Peptide
pdb|2LGL|A Chain A, Nmr Structure Of The Uhrf1 Phd Domain
Length = 69
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 241 CAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFC 289
C C R+ PD + +CD C+ AFH CLDPPL + + W+C C
Sbjct: 21 CHLCGGRQD-PDKQL-MCD-ECDMAFHIYCLDPPLSSVPSEDEWYCPEC 66
>pdb|3SOU|A Chain A, Structure Of Uhrf1 Phd Finger In Complex With Histone H3
1-9 Peptide
pdb|3SOU|B Chain B, Structure Of Uhrf1 Phd Finger In Complex With Histone H3
1-9 Peptide
pdb|3SOW|A Chain A, Structure Of Uhrf1 Phd Finger In Complex With Histone
H3k4me3 1-9 Peptide
pdb|3SOW|B Chain B, Structure Of Uhrf1 Phd Finger In Complex With Histone
H3k4me3 1-9 Peptide
pdb|3SOX|A Chain A, Structure Of Uhrf1 Phd Finger In The Free Form
pdb|3SOX|B Chain B, Structure Of Uhrf1 Phd Finger In The Free Form
pdb|3ASL|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail
Length = 70
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 241 CAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFC 289
C C R+ PD + +CD C+ AFH CLDPPL + + W+C C
Sbjct: 21 CHLCGGRQD-PDKQL-MCD-ECDMAFHIYCLDPPLSSVPSEDEWYCPEC 66
>pdb|3ZVY|A Chain A, Phd Finger Of Human Uhrf1 In Complex With Unmodified
Histone H3 N-Terminal Tail
pdb|3ZVY|B Chain B, Phd Finger Of Human Uhrf1 In Complex With Unmodified
Histone H3 N-Terminal Tail
Length = 72
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 241 CAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFC 289
C C R+ PD + +CD C+ AFH CLDPPL + + W+C C
Sbjct: 23 CHLCGGRQD-PDKQL-MCD-ECDMAFHIYCLDPPLSSVPSEDEWYCPEC 68
>pdb|2KU3|A Chain A, Solution Structure Of Brd1 Phd1 Finger
Length = 71
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 233 SVHHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFC 289
S+ E +C+ C E+ N I+ CD CN A HQ+C P E + W C+ C
Sbjct: 11 SLIDEDAVCSICMDGESQNSNVILFCD-MCNLAVHQECYGVPYIPEGQ---WLCRHC 63
>pdb|3ASK|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|B Chain B, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|C Chain C, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|D Chain D, Structure Of Uhrf1 In Complex With Histone Tail
Length = 226
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 241 CAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFC 289
C C R+ PD + +CD C+ AFH CLDPPL + + W+C C
Sbjct: 177 CHLCGGRQD-PDKQL-MCD-ECDMAFHIYCLDPPLSSVPSEDEWYCPEC 222
>pdb|4GY5|A Chain A, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|B Chain B, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|C Chain C, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|D Chain D, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
Length = 241
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 241 CAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFC 289
C C R+ PD + +CD C+ AFH CLDPPL + + W+C C
Sbjct: 193 CHLCGGRQD-PDKQL-MCD-ECDMAFHIYCLDPPLSSVPSEDEWYCPEC 238
>pdb|2YQL|A Chain A, Solution Structure Of The Phd Domain In Phd Finger Protein
21a
Length = 56
Score = 38.1 bits (87), Expect = 0.016, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 229 ATDGSVHHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKF 288
+ GS HE C+ C+ +++CD TC+ +H CLDPPL T + W C
Sbjct: 1 GSSGSSGHEDF-CSVCR-----KSGQLLMCD-TCSRVYHLDCLDPPLKTIPKGM-WICPR 52
Query: 289 CE 290
C+
Sbjct: 53 CQ 54
>pdb|1F62|A Chain A, Wstf-Phd
Length = 51
Score = 37.4 bits (85), Expect = 0.025, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 242 AKCKL-REAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCE 290
A+CK+ R+ D+ ++LCD CN AFH CL P L E D W C C+
Sbjct: 1 ARCKVCRKKGEDDKLILCD-ECNKAFHLFCLRPAL-YEVPDGEWQCPACQ 48
>pdb|2E6S|A Chain A, Solution Structure Of The Phd Domain In Ring Finger
Protein 107
Length = 77
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 256 VLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFC 289
+LCD CN A+H CL+PPLD ++ W+C C
Sbjct: 42 LLCD-ECNVAYHIYCLNPPLDKVPEEEYWYCPSC 74
>pdb|2PUY|A Chain A, Crystal Structure Of The Bhc80 Phd Finger
pdb|2PUY|B Chain B, Crystal Structure Of The Bhc80 Phd Finger
Length = 60
Score = 37.0 bits (84), Expect = 0.032, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
Query: 241 CAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCECKM 293
C+ C+ +++CD TC+ +H CLDPPL T + W C C+ +M
Sbjct: 8 CSVCR-----KSGQLLMCD-TCSRVYHLDCLDPPLKTIPKGM-WICPRCQDQM 53
>pdb|2L43|A Chain A, Structural Basis For Histone Code Recognition By
Brpf2-Phd1 Finger
Length = 88
Score = 37.0 bits (84), Expect = 0.037, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFC 289
E +C+ C E+ N I+ CD CN A HQ+C P E + W C+ C
Sbjct: 24 EDAVCSICMDGESQNSNVILFCD-MCNLAVHQECYGVPYIPEGQ---WLCRHC 72
>pdb|1MM3|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b With C-
Terminal Loop Replaced By Corresponding Loop From Wstf
Length = 61
Score = 36.2 bits (82), Expect = 0.055, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Query: 232 GSVHHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCEC 291
GS HH C CK D +LC TC ++H CL P L E D W C C C
Sbjct: 4 GSDHHMEF-CRVCK------DGGELLCCDTCPSSYHIHCLRPAL-YEVPDGEWQCPRCTC 55
>pdb|2L5U|A Chain A, Structure Of The First Phd Finger (Phd1) From Chd4 (Mi2b)
Length = 61
Score = 35.8 bits (81), Expect = 0.066, Method: Composition-based stats.
Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Query: 254 DIVLCDGTCNCAFHQKCLDPPLDTESRDQG-WFCKFCE 290
+I+LCD TC A+H CLDP D E +G W C CE
Sbjct: 22 EIILCD-TCPRAYHMVCLDP--DMEKAPEGKWSCPHCE 56
>pdb|2DMU|A Chain A, Solution Structure Of The Homeobox Domain Of Homeobox
Protein Goosecoid
Length = 70
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 508 VEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNAR 548
+E L +F E + P +E L++++ L EKV WFKN R
Sbjct: 19 LEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRR 59
>pdb|2YSM|A Chain A, Solution Structure Of The First And Second Phd Domain From
MyeloidLYMPHOID OR MIXED-Lineage Leukemia Protein 3
Homolog
Length = 111
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 240 ICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFC 289
+C CK ++ D+ +++CD TC+ +H CL P + + + GW CK C
Sbjct: 56 VCQNCK--QSGEDSKMLVCD-TCDKGYHTFCLQPVMKSVPTN-GWKCKNC 101
>pdb|3D1N|I Chain I, Structure Of Human Brn-5 Transcription Factor In Complex
With Corticotrophin-Releasing Hormone Gene Promoter
pdb|3D1N|J Chain J, Structure Of Human Brn-5 Transcription Factor In Complex
With Corticotrophin-Releasing Hormone Gene Promoter
pdb|3D1N|K Chain K, Structure Of Human Brn-5 Transcription Factor In Complex
With Corticotrophin-Releasing Hormone Gene Promoter
pdb|3D1N|L Chain L, Structure Of Human Brn-5 Transcription Factor In Complex
With Corticotrophin-Releasing Hormone Gene Promoter
pdb|3D1N|M Chain M, Structure Of Human Brn-5 Transcription Factor In Complex
With Corticotrophin-Releasing Hormone Gene Promoter
pdb|3D1N|N Chain N, Structure Of Human Brn-5 Transcription Factor In Complex
With Corticotrophin-Releasing Hormone Gene Promoter
pdb|3D1N|O Chain O, Structure Of Human Brn-5 Transcription Factor In Complex
With Corticotrophin-Releasing Hormone Gene Promoter
pdb|3D1N|P Chain P, Structure Of Human Brn-5 Transcription Factor In Complex
With Corticotrophin-Releasing Hormone Gene Promoter
Length = 151
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 491 PSNAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNAR 548
PS + RR+ P A+E L F +N LP+ +KEL+ + E V WF N R
Sbjct: 90 PSKKRKRRT--SFTPQAIEALNAYFEKNPLPTGQEITEXAKELNYDREVVRVWFSNRR 145
>pdb|2DN0|A Chain A, Solution Structure Of The Second Homeobox Domain Of Human
Zinc Fingers And Homeoboxes Protein 3
Length = 76
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 511 LRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARY 549
L+ F N+ P + E+L+K L +V KWF + RY
Sbjct: 23 LKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRY 61
>pdb|2E6R|A Chain A, Solution Structure Of The Phd Domain In Smcy Protein
Length = 92
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
Query: 240 ICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFC---ECK 292
IC C + D+ ++ CDG C+ +H CL PPL R W C C ECK
Sbjct: 18 ICQVCSRGDE--DDKLLFCDG-CDDNYHIFCLLPPLPEIPRGI-WRCPKCILAECK 69
>pdb|2KFT|A Chain A, Nmr Solution Structure Of The First Phd Finger Domain Of
Human Autoimmune Regulator (Aire) In Complex With
Histone H3(1-20cys) Peptide
Length = 56
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
Query: 241 CAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFC 289
CA C+ +++ CDG C AFH CL PPL E W C C
Sbjct: 8 CAVCR-----DGGELICCDG-CPRAFHLACLSPPL-REIPSGTWRCSSC 49
>pdb|1XWH|A Chain A, Nmr Structure Of The First Phd Finger Of Autoimmune
Regulator Protein (Aire1): Insights Into Apeced
pdb|2KE1|A Chain A, Molecular Basis Of Non-Modified Histone H3 Tail
Recognition By The First Phd Finger Of Autoimmune
Regulator
Length = 66
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
Query: 241 CAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFC 289
CA C+ +++ CDG C AFH CL PPL E W C C
Sbjct: 11 CAVCR-----DGGELICCDG-CPRAFHLACLSPPL-REIPSGTWRCSSC 52
>pdb|2D5V|A Chain A, Crystal Structure Of Hnf-6alpha Dna-Binding Domain In
Complex With The Ttr Promoter
pdb|2D5V|B Chain B, Crystal Structure Of Hnf-6alpha Dna-Binding Domain In
Complex With The Ttr Promoter
Length = 164
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 511 LRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLAL 552
L +F EN+ PS+ ++ +S++L LE V+ +F NAR +L
Sbjct: 112 LHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSL 153
>pdb|1S7E|A Chain A, Solution Structure Of Hnf-6
Length = 147
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 511 LRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNAR 548
L +F EN+ PS+ ++ +S++L LE V+ +F NAR
Sbjct: 110 LHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNAR 147
>pdb|1BW5|A Chain A, The Nmr Solution Structure Of The Homeodomain Of The Rat
Insulin Gene Enhancer Protein Isl-1, 50 Structures
Length = 66
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 511 LRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNAR 548
LR +A N P ++KE L + L P + WF+N R
Sbjct: 18 LRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKR 55
>pdb|2DMS|A Chain A, Solution Structure Of The Homeobox Domain Of Homeobox
Protein Otx2
Length = 80
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 497 RRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNAR 548
R +F R + +E L FA+ P ++E ++ +++L +V WFKN R
Sbjct: 11 RTTFTRAQLDVLEAL---FAKTRYPDIFMREEVALKINLPESRVQVWFKNRR 59
>pdb|2XB1|A Chain A, Crystal Structure Of The Human Pygo2 Phd Finger In Complex
With The B9l Hd1 Domain
pdb|2XB1|C Chain C, Crystal Structure Of The Human Pygo2 Phd Finger In Complex
With The B9l Hd1 Domain
Length = 105
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 6/54 (11%)
Query: 241 CAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPP-----LDTESRDQGWFCKFC 289
C C+ E D D +LC+ +C FH++C L T W C C
Sbjct: 6 CGACR-SEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLC 58
>pdb|4EGC|A Chain A, Crystal Structure Of Mbp-fused Human Six1 Bound To Human
Eya2 Eya Domain
Length = 559
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 511 LRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNAR 548
LR+ +A N PS K L++ L +V+ WFKN R
Sbjct: 509 LREWYAHNPYPSPREKRELAEATGLTTTQVSNWFKNRR 546
>pdb|2HOS|A Chain A, Phage-selected Homeodomain Bound To Unmodified Dna
pdb|2HOS|B Chain B, Phage-selected Homeodomain Bound To Unmodified Dna
pdb|2HOT|A Chain A, Phage Selected Homeodomain Bound To Modified Dna
pdb|2HOT|B Chain B, Phage Selected Homeodomain Bound To Modified Dna
Length = 63
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 508 VEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNAR 548
+ +L++ F EN + ++ LS EL L +V WFKN R
Sbjct: 16 LARLKREFNENRYLTERRRQQLSSELGLNEAQVKGWFKNMR 56
>pdb|3V43|A Chain A, Crystal Structure Of Moz
Length = 112
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 253 NDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFC 289
++++ CD +C+ FH +C DPPL T W C+ C
Sbjct: 75 DNMLFCD-SCDRGFHMECCDPPL-TRMPKGMWICQIC 109
>pdb|2LN0|A Chain A, Structure Of Moz
Length = 110
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 253 NDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFC 289
++++ CD +C+ FH +C DPPL T W C+ C
Sbjct: 73 DNMLFCD-SCDRGFHMECCDPPL-TRMPKGMWICQIC 107
>pdb|2M0C|A Chain A, Solution Nmr Structure Of Homeobox Domain Of Human Alx4,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4490c
Length = 75
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 27/59 (45%)
Query: 490 LPSNAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNAR 548
+ + K RR+ +E+L +VF + P +E L+ L +V WF+N R
Sbjct: 3 MSNKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRR 61
>pdb|1P7I|A Chain A, Crystal Structure Of Engrailed Homeodomain Mutant K52a
pdb|1P7I|B Chain B, Crystal Structure Of Engrailed Homeodomain Mutant K52a
pdb|1P7I|C Chain C, Crystal Structure Of Engrailed Homeodomain Mutant K52a
pdb|1P7I|D Chain D, Crystal Structure Of Engrailed Homeodomain Mutant K52a
Length = 59
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 508 VEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNAR 548
+ +L++ F EN + ++ LS EL L ++ WF+NAR
Sbjct: 13 LARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNAR 53
>pdb|1B72|B Chain B, Pbx1, Homeobox Protein Hox-B1DNA TERNARY COMPLEX
Length = 87
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 497 RRSFHRMPPNAVEKLRQVFAE---NELPSRIVKENLSKELSLEPEKVNKWFKNAR 548
RR+F++ A E L + F N PS KE L+K+ + +V+ WF N R
Sbjct: 5 RRNFNKQ---ATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKR 56
>pdb|2DA3|A Chain A, Solution Structure Of The Third Homeobox Domain Of At-
Binding Transcription Factor 1 (Atbf1)
Length = 80
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 505 PNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNAR 548
P +E L Q + + P+R + ++++ E+ L+ V WF+N R
Sbjct: 26 PEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTR 69
>pdb|1W7B|A Chain A, Annexin A2: Does It Induce Membrane Aggregation By A New
Multimeric State Of The Protein
Length = 339
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 404 IGSDETSDGEIICGRRQRRTVDYKKLYDEMFGKD 437
+G+DE S EIIC R + + ++Y EM+ D
Sbjct: 121 LGTDEDSLIEIICSRTNQELQEINRVYKEMYKTD 154
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.128 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,003,153
Number of Sequences: 62578
Number of extensions: 581221
Number of successful extensions: 1209
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1170
Number of HSP's gapped (non-prelim): 60
length of query: 629
length of database: 14,973,337
effective HSP length: 105
effective length of query: 524
effective length of database: 8,402,647
effective search space: 4402987028
effective search space used: 4402987028
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)