Query 006832
Match_columns 629
No_of_seqs 423 out of 2067
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 10:09:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006832.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006832hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dmu_A Homeobox protein goosec 99.7 1.9E-18 6.3E-23 142.6 6.5 65 492-556 3-67 (70)
2 2dmq_A LIM/homeobox protein LH 99.7 3.7E-18 1.3E-22 144.1 7.8 66 492-557 3-68 (80)
3 2dms_A Homeobox protein OTX2; 99.7 3.9E-18 1.3E-22 144.2 7.6 65 492-556 3-67 (80)
4 2cra_A Homeobox protein HOX-B1 99.7 1.4E-18 4.9E-23 143.4 4.7 64 492-555 3-66 (70)
5 2cue_A Paired box protein PAX6 99.7 4.1E-18 1.4E-22 144.2 7.4 67 492-558 3-69 (80)
6 2e1o_A Homeobox protein PRH; D 99.7 3.3E-18 1.1E-22 141.2 6.5 64 492-555 3-66 (70)
7 2da2_A Alpha-fetoprotein enhan 99.7 1.8E-18 6E-23 142.6 4.9 64 492-555 3-66 (70)
8 2da1_A Alpha-fetoprotein enhan 99.7 2.4E-18 8E-23 141.8 4.7 64 492-555 3-66 (70)
9 1nk2_P Homeobox protein VND; h 99.7 7.4E-18 2.5E-22 141.7 7.5 65 492-556 5-69 (77)
10 2djn_A Homeobox protein DLX-5; 99.7 2.1E-18 7.2E-23 142.4 3.8 64 492-555 3-66 (70)
11 2dmt_A Homeobox protein BARH-l 99.7 4.1E-18 1.4E-22 144.3 5.1 63 493-555 14-76 (80)
12 2h1k_A IPF-1, pancreatic and d 99.7 9.6E-18 3.3E-22 135.7 5.9 59 496-554 3-61 (63)
13 1wh5_A ZF-HD homeobox family p 99.7 6.3E-18 2.2E-22 143.7 4.7 60 493-552 14-77 (80)
14 1ig7_A Homeotic protein MSX-1; 99.7 1.2E-17 4E-22 132.7 6.0 57 497-553 1-57 (58)
15 2hdd_A Protein (engrailed home 99.7 8E-18 2.7E-22 135.2 5.0 58 496-553 3-60 (61)
16 2da3_A Alpha-fetoprotein enhan 99.7 5.6E-18 1.9E-22 142.7 4.3 63 493-555 14-76 (80)
17 2kt0_A Nanog, homeobox protein 99.7 8.5E-18 2.9E-22 143.1 5.3 64 492-555 18-81 (84)
18 1jgg_A Segmentation protein EV 99.7 1.2E-17 4E-22 133.8 5.6 58 497-554 2-59 (60)
19 1ahd_P Antennapedia protein mu 99.7 1.2E-17 4.2E-22 137.3 5.1 61 496-556 2-62 (68)
20 2vi6_A Homeobox protein nanog; 99.7 9.6E-18 3.3E-22 135.2 4.2 59 495-553 2-60 (62)
21 3a01_A Homeodomain-containing 99.7 2.1E-17 7E-22 144.1 6.5 68 492-559 13-80 (93)
22 1zq3_P PRD-4, homeotic bicoid 99.7 2.3E-17 7.9E-22 135.5 6.2 62 496-557 2-63 (68)
23 1fjl_A Paired protein; DNA-bin 99.7 2.3E-17 8E-22 139.8 6.4 64 493-556 15-78 (81)
24 1puf_A HOX-1.7, homeobox prote 99.7 3.3E-17 1.1E-21 137.7 7.2 63 494-556 11-73 (77)
25 2dmn_A Homeobox protein TGIF2L 99.7 3.8E-17 1.3E-21 139.6 7.6 64 492-555 3-69 (83)
26 1ftt_A TTF-1 HD, thyroid trans 99.7 2.3E-17 8E-22 135.5 6.0 61 496-556 2-62 (68)
27 1yz8_P Pituitary homeobox 2; D 99.7 1E-17 3.5E-22 137.5 3.9 62 495-556 2-63 (68)
28 1bw5_A ISL-1HD, insulin gene e 99.7 1.2E-17 4.1E-22 136.2 4.2 59 495-553 2-60 (66)
29 1akh_A Protein (mating-type pr 99.7 1.3E-17 4.4E-22 133.7 4.3 57 494-550 3-59 (61)
30 1x2n_A Homeobox protein pknox1 99.7 3.4E-17 1.2E-21 136.0 6.8 63 493-555 4-69 (73)
31 2l7z_A Homeobox protein HOX-A1 99.7 2.3E-17 8E-22 137.4 5.6 61 494-554 5-65 (73)
32 1wh7_A ZF-HD homeobox family p 99.7 1.6E-17 5.5E-22 141.5 4.1 59 493-552 14-77 (80)
33 2da5_A Zinc fingers and homeob 99.7 4.9E-17 1.7E-21 136.2 6.5 58 498-555 9-66 (75)
34 1b8i_A Ultrabithorax, protein 99.7 2.6E-17 9E-22 139.8 4.8 62 494-555 18-79 (81)
35 2cuf_A FLJ21616 protein; homeo 99.7 6.2E-17 2.1E-21 141.3 7.1 65 492-556 3-82 (95)
36 2da4_A Hypothetical protein DK 99.7 2.5E-17 8.6E-22 139.2 4.4 62 493-554 5-70 (80)
37 3rkq_A Homeobox protein NKX-2. 99.7 4.4E-17 1.5E-21 128.8 5.0 55 496-550 2-56 (58)
38 3a02_A Homeobox protein arista 99.7 3.7E-17 1.3E-21 130.9 4.5 57 499-555 2-58 (60)
39 2m0c_A Homeobox protein arista 99.7 8.8E-17 3E-21 133.6 6.6 62 493-554 6-67 (75)
40 2ecc_A Homeobox and leucine zi 99.7 7.1E-17 2.4E-21 136.4 5.8 55 500-554 7-61 (76)
41 2hi3_A Homeodomain-only protei 99.7 9.8E-17 3.4E-21 133.5 6.3 59 497-555 3-62 (73)
42 2k40_A Homeobox expressed in E 99.7 5.6E-17 1.9E-21 132.6 4.7 58 497-554 2-59 (67)
43 3a03_A T-cell leukemia homeobo 99.6 7.9E-17 2.7E-21 127.5 5.3 54 501-554 2-55 (56)
44 2r5y_A Homeotic protein sex co 99.6 5.1E-17 1.7E-21 139.9 4.5 61 494-554 26-86 (88)
45 2ecb_A Zinc fingers and homeob 99.6 9.5E-17 3.2E-21 139.4 6.2 55 501-555 16-70 (89)
46 1puf_B PRE-B-cell leukemia tra 99.6 8.6E-17 2.9E-21 133.6 5.4 60 497-556 2-64 (73)
47 1uhs_A HOP, homeodomain only p 99.6 1.1E-16 3.8E-21 132.7 5.8 58 498-555 3-61 (72)
48 1b72_B Protein (PBX1); homeodo 99.6 9.5E-17 3.3E-21 137.5 5.1 61 497-557 2-65 (87)
49 1wi3_A DNA-binding protein SAT 99.6 1.3E-16 4.5E-21 131.6 5.4 58 492-549 3-61 (71)
50 1b72_A Protein (homeobox prote 99.6 1.3E-16 4.4E-21 139.8 5.5 62 494-555 32-93 (97)
51 1du6_A PBX1, homeobox protein 99.6 5.9E-17 2E-21 131.2 3.0 58 496-553 3-63 (64)
52 1le8_B Mating-type protein alp 99.6 1.4E-16 4.7E-21 135.9 5.3 58 498-555 4-64 (83)
53 2ly9_A Zinc fingers and homeob 99.6 1.7E-16 5.9E-21 132.0 5.2 61 495-555 5-65 (74)
54 2dn0_A Zinc fingers and homeob 99.6 2.4E-16 8.4E-21 132.1 5.9 59 497-555 9-67 (76)
55 1k61_A Mating-type protein alp 99.6 2.1E-16 7.3E-21 126.4 5.1 53 500-552 2-57 (60)
56 2dmp_A Zinc fingers and homeob 99.6 5.2E-16 1.8E-20 134.3 6.1 56 500-555 17-72 (89)
57 3nar_A ZHX1, zinc fingers and 99.6 4E-16 1.4E-20 136.5 4.9 61 494-554 23-83 (96)
58 1mnm_C Protein (MAT alpha-2 tr 99.6 7E-16 2.4E-20 132.4 5.5 58 494-551 25-85 (87)
59 2da6_A Hepatocyte nuclear fact 99.6 1.8E-15 6.1E-20 134.4 8.0 65 492-556 2-87 (102)
60 3nau_A Zinc fingers and homeob 99.6 1.3E-15 4.4E-20 125.3 4.7 49 504-552 12-60 (66)
61 2cqx_A LAG1 longevity assuranc 99.6 4.6E-16 1.6E-20 129.8 1.7 55 498-552 10-65 (72)
62 3d1n_I POU domain, class 6, tr 99.6 1.8E-15 6.3E-20 142.4 5.5 61 493-553 90-150 (151)
63 1au7_A Protein PIT-1, GHF-1; c 99.6 1.4E-15 4.8E-20 142.8 4.3 61 493-553 84-144 (146)
64 2xsd_C POU domain, class 3, tr 99.5 1.3E-15 4.4E-20 145.7 3.6 62 494-555 97-158 (164)
65 1e3o_C Octamer-binding transcr 99.5 2.2E-15 7.6E-20 143.2 4.3 60 494-553 99-158 (160)
66 3k2a_A Homeobox protein MEIS2; 99.5 2.7E-15 9.2E-20 123.3 4.1 55 502-556 4-61 (67)
67 1lfb_A Liver transcription fac 99.5 1.5E-15 5.1E-20 134.3 2.7 59 493-551 6-85 (99)
68 2e19_A Transcription factor 8; 99.5 3.9E-15 1.3E-19 121.5 4.5 50 501-550 8-57 (64)
69 2l9r_A Homeobox protein NKX-3. 99.5 4.6E-15 1.6E-19 123.1 4.8 54 501-554 9-62 (69)
70 2d5v_A Hepatocyte nuclear fact 99.5 2.9E-15 9.9E-20 142.5 3.4 62 494-555 95-156 (164)
71 1x2m_A LAG1 longevity assuranc 99.5 3.4E-15 1.2E-19 122.3 1.6 46 505-550 9-55 (64)
72 3l1p_A POU domain, class 5, tr 99.5 8.5E-15 2.9E-19 138.6 3.8 60 494-553 94-153 (155)
73 2lk2_A Homeobox protein TGIF1; 99.4 2.8E-13 9.5E-18 117.6 6.6 56 501-556 10-68 (89)
74 1fp0_A KAP-1 corepressor; PHD 99.4 2.7E-13 9.3E-18 117.4 4.5 59 229-294 16-74 (88)
75 1wev_A Riken cDNA 1110020M19; 99.4 1.3E-13 4.3E-18 119.4 2.2 63 235-299 13-79 (88)
76 1ic8_A Hepatocyte nuclear fact 99.4 1.1E-13 3.8E-18 135.8 1.7 59 492-550 111-190 (194)
77 2h8r_A Hepatocyte nuclear fact 99.3 5.6E-13 1.9E-17 132.8 4.7 61 489-549 135-216 (221)
78 2e6r_A Jumonji/ARID domain-con 99.3 1E-12 3.5E-17 114.6 3.0 57 232-292 10-66 (92)
79 1mm2_A MI2-beta; PHD, zinc fin 99.3 1.9E-12 6.4E-17 104.7 4.0 51 236-293 7-57 (61)
80 1f62_A Transcription factor WS 99.3 1.5E-12 5.1E-17 101.2 3.2 48 240-291 2-49 (51)
81 1xwh_A Autoimmune regulator; P 99.3 1.3E-12 4.4E-17 107.2 2.9 50 236-292 6-55 (66)
82 2puy_A PHD finger protein 21A; 99.3 1.7E-12 5.7E-17 104.4 3.4 51 236-293 3-53 (60)
83 2yt5_A Metal-response element- 99.3 9.2E-13 3.1E-17 107.4 1.6 55 236-292 4-61 (66)
84 2l5u_A Chromodomain-helicase-D 99.2 2.8E-12 9.5E-17 103.7 4.0 52 233-291 6-57 (61)
85 2da7_A Zinc finger homeobox pr 99.2 3E-12 1E-16 106.2 3.7 45 505-549 14-58 (71)
86 2e6s_A E3 ubiquitin-protein li 99.2 6.1E-12 2.1E-16 106.5 5.2 56 231-291 20-76 (77)
87 2yql_A PHD finger protein 21A; 99.2 4.1E-12 1.4E-16 100.9 3.0 49 236-291 7-55 (56)
88 2lri_C Autoimmune regulator; Z 99.2 5.4E-12 1.9E-16 103.8 3.8 49 236-291 10-58 (66)
89 3asl_A E3 ubiquitin-protein li 99.2 6.4E-12 2.2E-16 104.4 4.2 56 231-291 12-68 (70)
90 2ku3_A Bromodomain-containing 99.2 3.5E-12 1.2E-16 106.4 2.3 54 236-293 14-67 (71)
91 2l43_A N-teminal domain from h 99.2 3.8E-12 1.3E-16 110.2 1.4 55 235-293 22-76 (88)
92 3shb_A E3 ubiquitin-protein li 99.1 2.2E-11 7.5E-16 103.1 3.8 56 231-291 20-76 (77)
93 3o36_A Transcription intermedi 99.1 2.2E-11 7.5E-16 117.7 4.3 50 236-292 2-51 (184)
94 3u5n_A E3 ubiquitin-protein li 99.1 2.2E-11 7.6E-16 119.9 3.8 50 236-292 5-54 (207)
95 1mh3_A Maltose binding-A1 home 99.1 2.2E-11 7.6E-16 127.8 3.3 54 497-550 366-419 (421)
96 3ask_A E3 ubiquitin-protein li 99.1 4.2E-11 1.4E-15 119.7 4.7 55 232-291 169-224 (226)
97 2kwj_A Zinc finger protein DPF 99.1 4.2E-11 1.4E-15 108.0 3.9 61 229-293 49-109 (114)
98 3v43_A Histone acetyltransfera 99.1 7.1E-11 2.4E-15 106.1 4.8 60 229-291 52-111 (112)
99 2ro1_A Transcription intermedi 99.0 9.1E-11 3.1E-15 114.4 3.6 48 238-292 2-49 (189)
100 2k16_A Transcription initiatio 99.0 1.4E-10 4.9E-15 96.8 3.9 55 235-293 15-69 (75)
101 2ysm_A Myeloid/lymphoid or mix 98.9 3.6E-10 1.2E-14 100.9 4.4 60 229-292 45-104 (111)
102 2lv9_A Histone-lysine N-methyl 98.8 2.3E-09 7.8E-14 94.4 5.0 55 232-292 22-76 (98)
103 4gne_A Histone-lysine N-methyl 98.7 6.7E-09 2.3E-13 93.0 3.5 49 235-292 12-62 (107)
104 2ysm_A Myeloid/lymphoid or mix 98.6 2.9E-08 9.9E-13 88.5 5.0 56 234-293 3-58 (111)
105 2lbm_A Transcriptional regulat 98.6 5.8E-09 2E-13 97.7 0.1 52 235-293 60-118 (142)
106 1weu_A Inhibitor of growth fam 98.5 8.9E-08 3E-12 83.4 5.5 49 236-292 34-85 (91)
107 2vnf_A ING 4, P29ING4, inhibit 98.5 2.7E-08 9.2E-13 80.2 1.6 48 237-292 9-59 (60)
108 1wen_A Inhibitor of growth fam 98.5 6.6E-08 2.3E-12 80.5 3.5 49 236-292 14-65 (71)
109 3c6w_A P28ING5, inhibitor of g 98.4 3.8E-08 1.3E-12 79.1 1.4 48 237-292 8-58 (59)
110 2jmi_A Protein YNG1, ING1 homo 98.4 8E-08 2.7E-12 83.6 2.8 47 236-290 24-74 (90)
111 2g6q_A Inhibitor of growth pro 98.3 9.3E-08 3.2E-12 77.6 1.4 48 237-292 10-60 (62)
112 1we9_A PHD finger family prote 98.3 2.2E-07 7.7E-12 75.1 2.2 56 236-293 4-59 (64)
113 3ql9_A Transcriptional regulat 98.2 8.5E-08 2.9E-12 88.5 -2.1 53 235-294 54-113 (129)
114 3o70_A PHD finger protein 13; 98.1 9.4E-07 3.2E-11 72.9 3.2 52 234-291 15-66 (68)
115 1x4i_A Inhibitor of growth pro 98.1 8.2E-07 2.8E-11 73.7 2.6 51 236-294 4-57 (70)
116 1wee_A PHD finger family prote 98.1 1.9E-06 6.6E-11 71.4 3.9 53 236-292 14-66 (72)
117 2ri7_A Nucleosome-remodeling f 98.0 4.3E-07 1.5E-11 86.6 -1.2 55 236-293 6-60 (174)
118 2nzz_A Penetratin conjugated G 98.0 7.8E-07 2.7E-11 65.3 0.4 20 538-557 1-20 (37)
119 2kwj_A Zinc finger protein DPF 97.9 1.5E-06 5.3E-11 78.1 0.3 53 239-293 2-62 (114)
120 2rsd_A E3 SUMO-protein ligase 97.9 6.2E-06 2.1E-10 67.7 3.7 54 236-292 8-65 (68)
121 1wem_A Death associated transc 97.9 1.8E-06 6.2E-11 72.1 0.1 53 236-292 14-70 (76)
122 1wew_A DNA-binding family prot 97.9 5.5E-06 1.9E-10 69.8 2.7 53 236-292 14-72 (78)
123 2vpb_A Hpygo1, pygopus homolog 97.8 2.6E-06 8.9E-11 69.7 0.4 52 236-290 6-64 (65)
124 1wep_A PHF8; structural genomi 97.8 3.7E-06 1.3E-10 70.9 1.0 54 236-292 10-63 (79)
125 2xb1_A Pygopus homolog 2, B-ce 97.8 5.8E-06 2E-10 73.6 1.7 54 238-294 3-63 (105)
126 3kqi_A GRC5, PHD finger protei 97.8 5.2E-06 1.8E-10 69.4 1.0 54 236-292 8-61 (75)
127 1wil_A KIAA1045 protein; ring 97.7 7.6E-06 2.6E-10 70.0 1.4 53 235-292 12-76 (89)
128 3o7a_A PHD finger protein 13 v 97.6 1.3E-05 4.4E-10 62.5 1.6 46 239-290 5-50 (52)
129 2kgg_A Histone demethylase jar 97.6 9.9E-06 3.4E-10 63.2 0.1 48 240-290 4-52 (52)
130 3v43_A Histone acetyltransfera 97.6 4.8E-06 1.7E-10 74.5 -2.1 55 238-294 5-66 (112)
131 3pur_A Lysine-specific demethy 97.2 9.4E-05 3.2E-09 81.9 2.5 41 251-292 54-94 (528)
132 3lqh_A Histone-lysine N-methyl 97.2 0.00012 4.3E-09 71.1 2.1 54 239-293 3-64 (183)
133 3kv5_D JMJC domain-containing 97.1 5.4E-05 1.9E-09 83.5 -0.9 55 236-293 35-89 (488)
134 3kv4_A PHD finger protein 8; e 96.2 0.00037 1.3E-08 76.1 -2.5 52 239-293 6-57 (447)
135 4bbq_A Lysine-specific demethy 95.8 0.0035 1.2E-07 55.8 2.4 40 252-292 72-114 (117)
136 2ku7_A MLL1 PHD3-CYP33 RRM chi 94.9 0.0049 1.7E-07 54.8 0.3 38 254-292 1-44 (140)
137 4gne_A Histone-lysine N-methyl 94.4 0.035 1.2E-06 49.6 4.4 47 231-286 52-98 (107)
138 2ys9_A Homeobox and leucine zi 93.5 0.047 1.6E-06 45.3 3.3 45 503-547 13-57 (70)
139 3a1b_A DNA (cytosine-5)-methyl 87.6 0.094 3.2E-06 49.9 -0.4 52 237-293 78-135 (159)
140 3rsn_A SET1/ASH2 histone methy 87.1 0.4 1.4E-05 46.4 3.6 50 239-291 6-58 (177)
141 2pv0_B DNA (cytosine-5)-methyl 84.7 0.16 5.3E-06 54.6 -0.5 51 237-293 92-149 (386)
142 1hlv_A CENP-B, major centromer 79.8 2 6.8E-05 37.7 4.9 48 499-549 4-51 (131)
143 2glo_A Brinker CG9653-PA; prot 76.9 1.7 5.7E-05 33.6 3.1 47 501-548 4-50 (59)
144 2d8s_A Cellular modulator of i 76.4 0.89 3E-05 38.0 1.4 52 236-293 13-68 (80)
145 2elh_A CG11849-PA, LD40883P; s 76.3 2.8 9.5E-05 34.9 4.5 45 497-546 17-61 (87)
146 4bbq_A Lysine-specific demethy 76.2 0.62 2.1E-05 41.1 0.4 37 238-292 7-43 (117)
147 1iym_A EL5; ring-H2 finger, ub 72.9 1.4 4.7E-05 32.9 1.6 48 238-292 5-52 (55)
148 1tc3_C Protein (TC3 transposas 72.4 3.6 0.00012 28.9 3.7 42 502-548 5-46 (51)
149 3k1l_B Fancl; UBC, ring, RWD, 69.8 2 6.9E-05 45.7 2.5 57 236-293 306-371 (381)
150 2l0b_A E3 ubiquitin-protein li 69.3 0.86 2.9E-05 38.3 -0.3 48 237-292 39-86 (91)
151 1jko_C HIN recombinase, DNA-in 65.2 3.6 0.00012 29.5 2.4 43 502-549 5-47 (52)
152 2ecl_A Ring-box protein 2; RNF 64.4 1.9 6.5E-05 35.5 0.9 50 237-292 14-73 (81)
153 2ct0_A Non-SMC element 1 homol 63.8 2 6.8E-05 35.6 0.8 46 238-291 15-60 (74)
154 4a0k_B E3 ubiquitin-protein li 61.6 1.8 6.3E-05 38.8 0.3 27 261-292 83-109 (117)
155 2ect_A Ring finger protein 126 60.5 4 0.00014 32.7 2.1 50 236-293 13-62 (78)
156 2kiz_A E3 ubiquitin-protein li 60.1 1.4 4.9E-05 34.5 -0.6 49 236-292 12-60 (69)
157 2kn9_A Rubredoxin; metalloprot 59.3 12 0.00043 31.7 4.9 24 269-294 48-71 (81)
158 3hug_A RNA polymerase sigma fa 58.3 7 0.00024 32.4 3.3 48 502-554 37-84 (92)
159 3l11_A E3 ubiquitin-protein li 57.6 5.9 0.0002 34.2 2.9 76 236-321 13-90 (115)
160 3dpl_R Ring-box protein 1; ubi 56.1 2.5 8.6E-05 37.1 0.2 27 261-292 72-98 (106)
161 2jn6_A Protein CGL2762, transp 56.0 9.4 0.00032 31.8 3.8 45 501-549 4-49 (97)
162 1v87_A Deltex protein 2; ring- 55.3 2.9 9.9E-05 36.0 0.4 54 238-292 25-91 (114)
163 1x4j_A Ring finger protein 38; 55.2 1.1 3.8E-05 35.9 -2.1 49 236-292 21-69 (75)
164 2d8t_A Dactylidin, ring finger 54.9 7.4 0.00025 30.7 2.8 48 236-294 13-60 (71)
165 2o8x_A Probable RNA polymerase 54.6 5.8 0.0002 30.6 2.1 45 502-551 15-59 (70)
166 2rn7_A IS629 ORFA; helix, all 54.2 12 0.0004 31.8 4.1 46 501-546 5-53 (108)
167 1p4w_A RCSB; solution structur 53.3 13 0.00043 32.0 4.2 44 500-549 32-75 (99)
168 2ecm_A Ring finger and CHY zin 51.7 2.1 7.3E-05 31.8 -0.9 49 237-292 4-52 (55)
169 2ep4_A Ring finger protein 24; 51.5 2.7 9.1E-05 33.4 -0.4 49 237-293 14-62 (74)
170 1vyx_A ORF K3, K3RING; zinc-bi 51.5 0.87 3E-05 36.0 -3.2 49 237-292 5-56 (60)
171 3c57_A Two component transcrip 51.3 9 0.00031 32.2 2.9 45 500-550 25-69 (95)
172 2lq6_A Bromodomain-containing 51.2 5.3 0.00018 34.0 1.4 30 239-271 18-48 (87)
173 1weq_A PHD finger protein 7; s 50.0 9.9 0.00034 32.5 2.9 33 253-290 44-77 (85)
174 3mzy_A RNA polymerase sigma-H 48.4 14 0.00047 32.4 3.8 48 502-555 109-156 (164)
175 4ayc_A E3 ubiquitin-protein li 46.5 4.2 0.00014 36.6 0.0 45 238-293 53-97 (138)
176 2x48_A CAG38821; archeal virus 45.2 14 0.00046 27.4 2.7 39 503-546 14-54 (55)
177 1fse_A GERE; helix-turn-helix 45.2 8.4 0.00029 30.0 1.6 45 500-550 9-53 (74)
178 1iuf_A Centromere ABP1 protein 44.5 15 0.0005 33.4 3.4 49 497-548 6-61 (144)
179 2ysl_A Tripartite motif-contai 43.0 13 0.00043 29.1 2.4 49 236-292 18-66 (73)
180 2p7v_B Sigma-70, RNA polymeras 42.9 8.9 0.00031 29.9 1.4 48 502-550 5-52 (68)
181 2xi8_A Putative transcription 42.0 9.1 0.00031 28.6 1.3 24 526-549 17-40 (66)
182 1x3u_A Transcriptional regulat 41.9 6.5 0.00022 31.2 0.5 42 503-550 17-58 (79)
183 1s7o_A Hypothetical UPF0122 pr 41.5 16 0.00056 32.0 3.1 47 502-553 22-68 (113)
184 2r1j_L Repressor protein C2; p 41.2 9.5 0.00032 28.7 1.3 25 525-549 20-44 (68)
185 3bd1_A CRO protein; transcript 40.6 9.6 0.00033 30.4 1.3 25 525-549 13-37 (79)
186 1ku3_A Sigma factor SIGA; heli 40.3 18 0.00061 28.5 2.9 51 501-552 9-59 (73)
187 2ct2_A Tripartite motif protei 39.7 6.7 0.00023 31.8 0.2 53 237-293 14-66 (88)
188 1zug_A Phage 434 CRO protein; 39.6 10 0.00035 28.9 1.3 24 526-549 19-42 (71)
189 3nw0_A Non-structural maintena 39.6 7.6 0.00026 38.8 0.7 46 238-291 180-225 (238)
190 2ckl_B Ubiquitin ligase protei 38.7 4 0.00014 37.7 -1.5 48 237-293 53-100 (165)
191 3fl2_A E3 ubiquitin-protein li 38.2 4 0.00014 35.8 -1.4 71 237-321 51-121 (124)
192 3bs3_A Putative DNA-binding pr 38.1 11 0.00039 29.1 1.4 24 526-549 26-49 (76)
193 2ea6_A Ring finger protein 4; 38.0 5.6 0.00019 30.6 -0.5 51 236-292 13-65 (69)
194 1e4u_A Transcriptional repress 37.9 11 0.00037 31.1 1.2 51 237-293 10-60 (78)
195 2ecj_A Tripartite motif-contai 36.6 13 0.00044 27.6 1.4 45 237-289 14-58 (58)
196 1je8_A Nitrate/nitrite respons 36.0 10 0.00034 31.1 0.7 45 500-550 19-63 (82)
197 2rnj_A Response regulator prot 35.9 13 0.00045 30.7 1.5 44 501-550 28-71 (91)
198 2egp_A Tripartite motif-contai 35.5 20 0.00067 28.4 2.4 51 237-293 11-63 (79)
199 1adr_A P22 C2 repressor; trans 35.3 13 0.00045 28.6 1.3 25 525-549 20-44 (76)
200 3omt_A Uncharacterized protein 35.2 14 0.00047 28.7 1.4 25 525-549 23-47 (73)
201 1r69_A Repressor protein CI; g 35.1 14 0.00046 28.0 1.3 24 526-549 17-40 (69)
202 2b5a_A C.BCLI; helix-turn-heli 35.0 14 0.00046 28.7 1.4 25 525-549 25-49 (77)
203 1rzs_A Antirepressor, regulato 34.2 16 0.00054 28.3 1.6 20 525-544 12-31 (61)
204 3kz3_A Repressor protein CI; f 33.8 14 0.0005 29.3 1.4 25 525-549 27-51 (80)
205 1rp3_A RNA polymerase sigma fa 33.7 22 0.00075 33.3 2.8 47 502-553 187-233 (239)
206 4b2u_A S67; toxin, ICK; NMR {S 33.2 8.3 0.00028 27.1 -0.2 12 281-292 16-27 (36)
207 3lrq_A E3 ubiquitin-protein li 33.2 4.1 0.00014 34.7 -2.2 48 237-293 21-68 (100)
208 3b7h_A Prophage LP1 protein 11 32.7 16 0.00055 28.3 1.4 23 526-548 23-45 (78)
209 1y7y_A C.AHDI; helix-turn-heli 32.5 16 0.00054 28.0 1.4 25 525-549 28-52 (74)
210 2rgt_A Fusion of LIM/homeobox 32.5 0.83 2.8E-05 42.7 -7.3 29 496-524 136-164 (169)
211 2djb_A Polycomb group ring fin 32.4 12 0.0004 29.6 0.6 47 237-293 14-60 (72)
212 1u78_A TC3 transposase, transp 32.4 39 0.0013 29.1 4.1 43 501-548 5-47 (141)
213 1chc_A Equine herpes virus-1 r 32.1 6.9 0.00024 30.3 -0.9 46 237-292 4-49 (68)
214 1xsv_A Hypothetical UPF0122 pr 30.9 32 0.0011 29.9 3.2 48 502-554 25-72 (113)
215 1jm7_A BRCA1, breast cancer ty 30.8 6.3 0.00022 33.5 -1.4 48 238-293 21-68 (112)
216 3ng2_A RNF4, snurf, ring finge 30.2 3.3 0.00011 32.3 -3.1 52 236-293 8-61 (71)
217 2d8v_A Zinc finger FYVE domain 30.2 24 0.00083 28.9 2.0 32 237-293 7-38 (67)
218 2kpj_A SOS-response transcript 30.0 18 0.00062 29.7 1.4 25 525-549 24-48 (94)
219 2ecn_A Ring finger protein 141 29.5 15 0.00052 28.5 0.8 44 237-292 14-57 (70)
220 2a6c_A Helix-turn-helix motif; 29.5 19 0.00065 29.0 1.4 24 525-548 33-56 (83)
221 2xeu_A Ring finger protein 4; 29.1 5.8 0.0002 30.1 -1.8 50 238-293 3-54 (64)
222 1or7_A Sigma-24, RNA polymeras 28.3 33 0.0011 31.1 2.9 46 503-553 141-186 (194)
223 3fmy_A HTH-type transcriptiona 28.1 25 0.00084 27.8 1.8 41 502-549 10-50 (73)
224 2lk0_A RNA-binding protein 5; 28.1 19 0.00063 25.1 0.9 11 281-291 3-13 (32)
225 2ef8_A C.ECOT38IS, putative tr 28.0 21 0.00072 28.1 1.4 25 525-549 25-49 (84)
226 2kvr_A Ubiquitin carboxyl-term 28.0 26 0.0009 31.8 2.2 24 526-549 72-95 (130)
227 2ecw_A Tripartite motif-contai 27.5 8.5 0.00029 30.7 -1.1 51 237-293 18-69 (85)
228 3f6w_A XRE-family like protein 27.5 21 0.00073 28.2 1.3 25 525-549 29-53 (83)
229 2k27_A Paired box protein PAX- 27.5 72 0.0025 28.6 5.1 44 501-549 24-67 (159)
230 2wiu_B HTH-type transcriptiona 27.4 23 0.00078 28.2 1.5 25 525-549 27-51 (88)
231 4cpa_I Metallocarboxypeptidase 27.4 24 0.00083 25.5 1.4 11 281-291 19-29 (38)
232 2ckl_A Polycomb group ring fin 27.0 14 0.00047 31.5 0.1 47 237-293 14-60 (108)
233 1z6u_A NP95-like ring finger p 26.9 6.1 0.00021 36.4 -2.3 46 238-293 78-123 (150)
234 2csy_A Zinc finger protein 183 26.9 9.8 0.00034 30.7 -0.8 46 237-293 14-59 (81)
235 2k9q_A Uncharacterized protein 26.8 21 0.00073 28.0 1.2 24 526-549 18-41 (77)
236 2fiy_A Protein FDHE homolog; F 26.7 25 0.00086 36.5 2.0 42 237-292 181-231 (309)
237 2yur_A Retinoblastoma-binding 26.6 15 0.00053 29.1 0.3 49 236-292 13-61 (74)
238 1zbd_B Rabphilin-3A; G protein 26.6 55 0.0019 29.9 4.1 58 237-296 54-111 (134)
239 2ysj_A Tripartite motif-contai 25.7 8.7 0.0003 29.4 -1.3 45 237-289 19-63 (63)
240 2hin_A GP39, repressor protein 25.5 23 0.0008 28.9 1.2 24 526-549 13-36 (71)
241 2ict_A Antitoxin HIGA; helix-t 25.5 23 0.0008 28.9 1.3 25 525-549 23-47 (94)
242 1pdn_C Protein (PRD paired); p 25.4 42 0.0014 28.1 2.9 42 502-548 17-58 (128)
243 3bdn_A Lambda repressor; repre 25.3 28 0.00096 33.2 1.9 25 525-549 32-56 (236)
244 1s24_A Rubredoxin 2; electron 24.9 36 0.0012 29.2 2.3 24 269-294 56-79 (87)
245 1lmb_3 Protein (lambda repress 24.7 25 0.00087 28.3 1.3 25 525-549 32-56 (92)
246 3s8q_A R-M controller protein; 24.3 27 0.00091 27.6 1.4 25 525-549 26-50 (82)
247 6rxn_A Rubredoxin; electron tr 24.2 42 0.0015 25.4 2.3 17 275-293 24-40 (46)
248 2lv7_A Calcium-binding protein 24.1 81 0.0028 26.4 4.4 47 499-545 26-79 (100)
249 2l49_A C protein; P2 bacteriop 24.1 29 0.00098 28.4 1.5 25 525-549 19-43 (99)
250 3t76_A VANU, transcriptional r 24.0 27 0.00092 29.2 1.4 25 525-549 39-63 (88)
251 1k78_A Paired box protein PAX5 23.6 1E+02 0.0035 27.1 5.3 47 500-549 88-144 (149)
252 3i5g_B Myosin regulatory light 23.5 1.2E+02 0.004 27.0 5.7 40 500-539 7-51 (153)
253 2y43_A E3 ubiquitin-protein li 23.4 14 0.00047 31.0 -0.6 47 237-293 21-67 (99)
254 1tty_A Sigma-A, RNA polymerase 23.3 28 0.00096 28.5 1.3 49 502-551 18-66 (87)
255 3qq6_A HTH-type transcriptiona 23.1 29 0.001 27.6 1.4 25 525-549 25-50 (78)
256 2q0o_A Probable transcriptiona 22.9 48 0.0016 31.9 3.1 44 501-550 174-217 (236)
257 4ap4_A E3 ubiquitin ligase RNF 22.9 6.7 0.00023 34.0 -2.8 52 235-293 69-123 (133)
258 1jm7_B BARD1, BRCA1-associated 22.4 35 0.0012 29.5 1.9 45 237-293 21-65 (117)
259 1x57_A Endothelial differentia 22.3 29 0.00098 28.1 1.2 25 525-549 28-52 (91)
260 1u78_A TC3 transposase, transp 22.3 84 0.0029 26.9 4.3 44 502-549 60-105 (141)
261 1dx8_A Rubredoxin; electron tr 22.2 33 0.0011 28.1 1.5 23 270-294 29-51 (70)
262 2jpc_A SSRB; DNA binding prote 22.0 31 0.001 25.8 1.2 24 527-550 17-40 (61)
263 2zet_C Melanophilin; complex, 21.7 44 0.0015 31.3 2.4 55 237-296 67-121 (153)
264 3dzy_A Retinoic acid receptor 21.3 12 0.00041 40.7 -1.7 58 238-297 137-202 (467)
265 1bor_A Transcription factor PM 21.2 59 0.002 24.4 2.7 42 237-292 5-46 (56)
266 3t72_q RNA polymerase sigma fa 21.2 55 0.0019 28.1 2.8 51 502-553 19-69 (99)
267 3ulq_B Transcriptional regulat 21.2 63 0.0022 26.9 3.1 44 500-549 27-70 (90)
268 2qko_A Possible transcriptiona 21.1 41 0.0014 30.6 2.1 42 508-550 34-75 (215)
269 1k78_A Paired box protein PAX5 20.8 61 0.0021 28.6 3.1 43 501-548 31-73 (149)
270 2k1p_A Zinc finger RAN-binding 20.4 31 0.0011 24.1 0.8 11 281-291 4-14 (33)
271 2v79_A DNA replication protein 20.4 71 0.0024 28.9 3.5 44 502-548 29-76 (135)
272 2ppx_A AGR_C_3184P, uncharacte 20.4 35 0.0012 28.3 1.4 24 526-549 46-69 (99)
273 2ofy_A Putative XRE-family tra 20.2 36 0.0012 27.1 1.4 24 525-548 29-52 (86)
No 1
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.9e-18 Score=142.57 Aligned_cols=65 Identities=29% Similarity=0.438 Sum_probs=59.2
Q ss_pred CccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhhh
Q 006832 492 SNAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKARK 556 (629)
Q Consensus 492 ~~~k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~K~~~ 556 (629)
.+.+.+|.|++||.+|+.+||.+|..++||+..+++.||..|||++.||+|||||||++.+|..+
T Consensus 3 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2dmu_A 3 SGSSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGP 67 (70)
T ss_dssp STTSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTST
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccCC
Confidence 34556788899999999999999999999999999999999999999999999999997776653
No 2
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=3.7e-18 Score=144.08 Aligned_cols=66 Identities=20% Similarity=0.255 Sum_probs=60.0
Q ss_pred CccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhhhh
Q 006832 492 SNAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKARKV 557 (629)
Q Consensus 492 ~~~k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~K~~~~ 557 (629)
+..+.+|.|++||.+|+.+||.+|..++||+..+++.||..|||++.||+|||||||++.+|....
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (80)
T 2dmq_A 3 SGSSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLR 68 (80)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHH
Confidence 345678889999999999999999999999999999999999999999999999999977776543
No 3
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.73 E-value=3.9e-18 Score=144.25 Aligned_cols=65 Identities=23% Similarity=0.442 Sum_probs=59.2
Q ss_pred CccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhhh
Q 006832 492 SNAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKARK 556 (629)
Q Consensus 492 ~~~k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~K~~~ 556 (629)
...+.+|.|++||.+|+.+||.+|..++||+..+++.||..|||++.||+|||||||++.+|..+
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~ 67 (80)
T 2dms_A 3 SGSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQ 67 (80)
T ss_dssp CCCCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHH
Confidence 34667888999999999999999999999999999999999999999999999999997666553
No 4
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=1.4e-18 Score=143.40 Aligned_cols=64 Identities=20% Similarity=0.332 Sum_probs=58.1
Q ss_pred CccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhh
Q 006832 492 SNAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 555 (629)
Q Consensus 492 ~~~k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~K~~ 555 (629)
+..+.+|+|++||..|+.+||.+|..++||+..+++.||..|||++.||+|||||||++.+|..
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 3 SGSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp SSCCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 4456788899999999999999999999999999999999999999999999999999655543
No 5
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=4.1e-18 Score=144.20 Aligned_cols=67 Identities=21% Similarity=0.409 Sum_probs=60.7
Q ss_pred CccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhhhhh
Q 006832 492 SNAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKARKVE 558 (629)
Q Consensus 492 ~~~k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~K~~~~~ 558 (629)
++...+|.|++||..|+.+||.+|..++||+..+++.||..|||++.||+|||||||++.+|..+..
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~ 69 (80)
T 2cue_A 3 SGSSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLR 69 (80)
T ss_dssp SCCSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhhh
Confidence 3456688889999999999999999999999999999999999999999999999999877776544
No 6
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=3.3e-18 Score=141.22 Aligned_cols=64 Identities=22% Similarity=0.306 Sum_probs=58.5
Q ss_pred CccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhh
Q 006832 492 SNAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 555 (629)
Q Consensus 492 ~~~k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~K~~ 555 (629)
++...++++++||.+|+.+||.+|..++||+..+++.||..|||++.||++||||||++.++..
T Consensus 3 ~~~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 3 SGSSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 3455677889999999999999999999999999999999999999999999999999776655
No 7
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.73 E-value=1.8e-18 Score=142.57 Aligned_cols=64 Identities=31% Similarity=0.369 Sum_probs=58.4
Q ss_pred CccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhh
Q 006832 492 SNAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 555 (629)
Q Consensus 492 ~~~k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~K~~ 555 (629)
+..+.+|+|++||..|+.+||.+|..++||+..+++.||..|||++.||++||||||++.+|..
T Consensus 3 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 3 SGSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp CSCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 4466788899999999999999999999999999999999999999999999999999655543
No 8
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.72 E-value=2.4e-18 Score=141.81 Aligned_cols=64 Identities=22% Similarity=0.393 Sum_probs=58.4
Q ss_pred CccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhh
Q 006832 492 SNAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 555 (629)
Q Consensus 492 ~~~k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~K~~ 555 (629)
...+.+|+|++||.+|+.+||.+|..++||+..++..||..|||++.||++||||||++.+|..
T Consensus 3 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 3 SGSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp SSCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 4456788899999999999999999999999999999999999999999999999999665543
No 9
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.72 E-value=7.4e-18 Score=141.67 Aligned_cols=65 Identities=25% Similarity=0.381 Sum_probs=59.2
Q ss_pred CccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhhh
Q 006832 492 SNAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKARK 556 (629)
Q Consensus 492 ~~~k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~K~~~ 556 (629)
...+.+|.|++||..|+..||.+|..++||+..+++.||..|||++.||+|||||||++.+|...
T Consensus 5 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~ 69 (77)
T 1nk2_P 5 LPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQN 69 (77)
T ss_dssp CSCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhc
Confidence 34566788899999999999999999999999999999999999999999999999997766654
No 10
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=2.1e-18 Score=142.39 Aligned_cols=64 Identities=20% Similarity=0.285 Sum_probs=58.1
Q ss_pred CccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhh
Q 006832 492 SNAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 555 (629)
Q Consensus 492 ~~~k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~K~~ 555 (629)
.+.+.+|+|++||..|+.+||.+|..++||+..+++.||..|||++.||++||||||++.+|..
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 3 SGSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp SCCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccC
Confidence 4466788899999999999999999999999999999999999999999999999999655443
No 11
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=4.1e-18 Score=144.25 Aligned_cols=63 Identities=24% Similarity=0.283 Sum_probs=57.8
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhh
Q 006832 493 NAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 555 (629)
Q Consensus 493 ~~k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~K~~ 555 (629)
..+.+|.|+.||..|+.+||.+|..++||+..+|+.||..|||++.||+|||||||++.+|..
T Consensus 14 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 14 AKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 456678899999999999999999999999999999999999999999999999999665544
No 12
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.70 E-value=9.6e-18 Score=135.72 Aligned_cols=59 Identities=24% Similarity=0.291 Sum_probs=54.1
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHh
Q 006832 496 IRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKA 554 (629)
Q Consensus 496 ~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~K~ 554 (629)
.+|+|++||..|+..||.+|..++||+..++..||..|||++.||++||||||++.+|.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 46788999999999999999999999999999999999999999999999999966554
No 13
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.70 E-value=6.3e-18 Score=143.74 Aligned_cols=60 Identities=10% Similarity=0.181 Sum_probs=55.6
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHh----CCCCCHHHHHHHHHHhCCCcchhhhccchhccHHH
Q 006832 493 NAKIRRSFHRMPPNAVEKLRQVFAE----NELPSRIVKENLSKELSLEPEKVNKWFKNARYLAL 552 (629)
Q Consensus 493 ~~k~kR~r~rft~~Q~~~Le~~F~~----~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~ 552 (629)
..+.||.|+.||.+|+.+||.+|.. ++||+..+|++||..|||++.||+|||||||++.+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~ 77 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGP 77 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSS
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCC
Confidence 3567888999999999999999999 99999999999999999999999999999999543
No 14
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.70 E-value=1.2e-17 Score=132.67 Aligned_cols=57 Identities=25% Similarity=0.372 Sum_probs=53.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHH
Q 006832 497 RRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALK 553 (629)
Q Consensus 497 kR~r~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~K 553 (629)
||+|+.||..|+..||.+|..++||+..++..||..|||++.||++||||||++.+|
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 467899999999999999999999999999999999999999999999999996554
No 15
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.70 E-value=8e-18 Score=135.22 Aligned_cols=58 Identities=28% Similarity=0.462 Sum_probs=51.6
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHH
Q 006832 496 IRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALK 553 (629)
Q Consensus 496 ~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~K 553 (629)
.+|+|+.||..|+..||.+|..++||+..+++.||..|||++.||++||||||++.+|
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 4778899999999999999999999999999999999999999999999999995543
No 16
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.70 E-value=5.6e-18 Score=142.72 Aligned_cols=63 Identities=24% Similarity=0.408 Sum_probs=57.4
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhh
Q 006832 493 NAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 555 (629)
Q Consensus 493 ~~k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~K~~ 555 (629)
..+.+|.|++||.+|+.+||.+|..++||+..++++||..|||++.||+|||||||++.+|..
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 14 PQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 356678899999999999999999999999999999999999999999999999999655543
No 17
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.70 E-value=8.5e-18 Score=143.12 Aligned_cols=64 Identities=20% Similarity=0.276 Sum_probs=58.1
Q ss_pred CccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhh
Q 006832 492 SNAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 555 (629)
Q Consensus 492 ~~~k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~K~~ 555 (629)
...+.+|.|+.||..|+.+||.+|..++||+..+|+.||..|||++.||+|||||||++.+|..
T Consensus 18 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 18 VPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp CCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 3456788899999999999999999999999999999999999999999999999999655543
No 18
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.69 E-value=1.2e-17 Score=133.82 Aligned_cols=58 Identities=22% Similarity=0.392 Sum_probs=54.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHh
Q 006832 497 RRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKA 554 (629)
Q Consensus 497 kR~r~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~K~ 554 (629)
||.|+.||..|+..||.+|..++||+..++..||..|||++.||++||||+|++.+|+
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 6788999999999999999999999999999999999999999999999999976664
No 19
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.69 E-value=1.2e-17 Score=137.28 Aligned_cols=61 Identities=23% Similarity=0.313 Sum_probs=56.7
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhhh
Q 006832 496 IRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKARK 556 (629)
Q Consensus 496 ~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~K~~~ 556 (629)
++|.|+.||..|+..||.+|..++||+..++..||..|||++.||+|||||||++.+|..+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~ 62 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENK 62 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhcc
Confidence 3677899999999999999999999999999999999999999999999999997776653
No 20
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.69 E-value=9.6e-18 Score=135.18 Aligned_cols=59 Identities=20% Similarity=0.298 Sum_probs=50.6
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHH
Q 006832 495 KIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALK 553 (629)
Q Consensus 495 k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~K 553 (629)
+.+|+|+.||..|+.+||.+|..++||+..++..||..|||++.||+|||||||++.+|
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr 60 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKR 60 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhh
Confidence 35778899999999999999999999999999999999999999999999999995443
No 21
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.69 E-value=2.1e-17 Score=144.11 Aligned_cols=68 Identities=18% Similarity=0.300 Sum_probs=61.1
Q ss_pred CccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhhhhhh
Q 006832 492 SNAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKARKVES 559 (629)
Q Consensus 492 ~~~k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~K~~~~~~ 559 (629)
...+.+|+|+.||..|+..||.+|..++||+..+|..||..|||++.||+|||||||++.+|....+.
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~ 80 (93)
T 3a01_A 13 TPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEER 80 (93)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred CCCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHHH
Confidence 34567888999999999999999999999999999999999999999999999999998877765443
No 22
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.68 E-value=2.3e-17 Score=135.51 Aligned_cols=62 Identities=24% Similarity=0.325 Sum_probs=57.3
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhhhh
Q 006832 496 IRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKARKV 557 (629)
Q Consensus 496 ~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~K~~~~ 557 (629)
.+|.|+.||..|+..||.+|..++||+..++..||..|||++.||+|||||||++.++....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~ 63 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQ 63 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhcc
Confidence 46788999999999999999999999999999999999999999999999999977766543
No 23
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.68 E-value=2.3e-17 Score=139.75 Aligned_cols=64 Identities=23% Similarity=0.455 Sum_probs=57.9
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhhh
Q 006832 493 NAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKARK 556 (629)
Q Consensus 493 ~~k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~K~~~ 556 (629)
..+.+|.|++||..|+..||.+|..++||+..++..||..|||++.||++||||||++.+|...
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 3556788999999999999999999999999999999999999999999999999997776653
No 24
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.68 E-value=3.3e-17 Score=137.74 Aligned_cols=63 Identities=22% Similarity=0.281 Sum_probs=58.2
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhhh
Q 006832 494 AKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKARK 556 (629)
Q Consensus 494 ~k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~K~~~ 556 (629)
.+.+|.|++||..|+.+||.+|..++||+..+++.||..|||++.||+|||||||++.+|..+
T Consensus 11 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k 73 (77)
T 1puf_A 11 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 73 (77)
T ss_dssp CTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhh
Confidence 456778899999999999999999999999999999999999999999999999997776654
No 25
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.68 E-value=3.8e-17 Score=139.59 Aligned_cols=64 Identities=27% Similarity=0.377 Sum_probs=58.1
Q ss_pred CccccCCCCCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhh
Q 006832 492 SNAKIRRSFHRMPPNAVEKLRQVFAE---NELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 555 (629)
Q Consensus 492 ~~~k~kR~r~rft~~Q~~~Le~~F~~---~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~K~~ 555 (629)
+..+.+|++++|+.+|+.+|+.+|.+ +|||+..+|++||..|||++.||+|||||+|++.++..
T Consensus 3 ~~~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~ 69 (83)
T 2dmn_A 3 SGSSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDM 69 (83)
T ss_dssp CCCCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHH
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHH
Confidence 44567788899999999999999998 59999999999999999999999999999999776654
No 26
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.68 E-value=2.3e-17 Score=135.48 Aligned_cols=61 Identities=26% Similarity=0.418 Sum_probs=56.6
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhhh
Q 006832 496 IRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKARK 556 (629)
Q Consensus 496 ~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~K~~~ 556 (629)
++|++++||..|+..||.+|..++||+..++..||..|||++.||+|||||||++.+|..+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~ 62 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhh
Confidence 4678899999999999999999999999999999999999999999999999997666653
No 27
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.68 E-value=1e-17 Score=137.49 Aligned_cols=62 Identities=24% Similarity=0.388 Sum_probs=57.3
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhhh
Q 006832 495 KIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKARK 556 (629)
Q Consensus 495 k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~K~~~ 556 (629)
+.+|+|+.||..|+..||.+|..++||+..++..||..|||++.||+|||||||++.+|..+
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~ 63 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREE 63 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhh
Confidence 45778899999999999999999999999999999999999999999999999997666653
No 28
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.68 E-value=1.2e-17 Score=136.24 Aligned_cols=59 Identities=29% Similarity=0.476 Sum_probs=54.9
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHH
Q 006832 495 KIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALK 553 (629)
Q Consensus 495 k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~K 553 (629)
+.+|+|+.||.+|+..||.+|..++||+..+++.||..|||++.||++||||||++.+|
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 60 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhH
Confidence 35788899999999999999999999999999999999999999999999999995443
No 29
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.68 E-value=1.3e-17 Score=133.73 Aligned_cols=57 Identities=26% Similarity=0.405 Sum_probs=47.3
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccH
Q 006832 494 AKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYL 550 (629)
Q Consensus 494 ~k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k 550 (629)
.+.+|++++||..|+..||.+|..++||+..++..||..|||++.||++||||+|++
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k 59 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMR 59 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhc
Confidence 456778899999999999999999999999999999999999999999999999994
No 30
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.68 E-value=3.4e-17 Score=136.01 Aligned_cols=63 Identities=22% Similarity=0.352 Sum_probs=57.6
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhh
Q 006832 493 NAKIRRSFHRMPPNAVEKLRQVFAE---NELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 555 (629)
Q Consensus 493 ~~k~kR~r~rft~~Q~~~Le~~F~~---~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~K~~ 555 (629)
.++.+|.+++|+..|+..|+.+|.+ ++||+..+|++||..|||++.||++||||+|++.++..
T Consensus 4 ~~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~ 69 (73)
T 1x2n_A 4 GSSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSG 69 (73)
T ss_dssp CSSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccc
Confidence 4556778899999999999999988 99999999999999999999999999999999776654
No 31
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.68 E-value=2.3e-17 Score=137.39 Aligned_cols=61 Identities=20% Similarity=0.307 Sum_probs=56.2
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHh
Q 006832 494 AKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKA 554 (629)
Q Consensus 494 ~k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~K~ 554 (629)
.+.+|.|++||..|+..||.+|..++||+..++..||..|||++.||++||||||++.+|.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 65 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 65 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHH
Confidence 4567888999999999999999999999999999999999999999999999999955544
No 32
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.67 E-value=1.6e-17 Score=141.45 Aligned_cols=59 Identities=17% Similarity=0.289 Sum_probs=54.4
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHhCCCcchhhhccchhccHHH
Q 006832 493 NAKIRRSFHRMPPNAVEKLRQVFAE-----NELPSRIVKENLSKELSLEPEKVNKWFKNARYLAL 552 (629)
Q Consensus 493 ~~k~kR~r~rft~~Q~~~Le~~F~~-----~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~ 552 (629)
..+.||.|+.||.+|+.+|| .|.+ ++||+..+|++||..|||++.||+|||||||++.+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~ 77 (80)
T 1wh7_A 14 GGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGP 77 (80)
T ss_dssp CCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSC
T ss_pred CCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCC
Confidence 45678889999999999999 7999 99999999999999999999999999999999543
No 33
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=4.9e-17 Score=136.21 Aligned_cols=58 Identities=21% Similarity=0.418 Sum_probs=53.3
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhh
Q 006832 498 RSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 555 (629)
Q Consensus 498 R~r~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~K~~ 555 (629)
+++.+||.+|+.+||.+|..++||+..+|..||..|||++.||+|||||||++.+|..
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEE 66 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSS
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhh
Confidence 3456789999999999999999999999999999999999999999999999766655
No 34
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.67 E-value=2.6e-17 Score=139.78 Aligned_cols=62 Identities=23% Similarity=0.312 Sum_probs=53.1
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhh
Q 006832 494 AKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 555 (629)
Q Consensus 494 ~k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~K~~ 555 (629)
...+|.|+.||..|+..||.+|..++||+..+|+.||..|||++.||+|||||||++.+|..
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 45678889999999999999999999999999999999999999999999999999666543
No 35
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.67 E-value=6.2e-17 Score=141.30 Aligned_cols=65 Identities=22% Similarity=0.333 Sum_probs=59.9
Q ss_pred CccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhC---------------CCcchhhhccchhccHHHHhhh
Q 006832 492 SNAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELS---------------LEPEKVNKWFKNARYLALKARK 556 (629)
Q Consensus 492 ~~~k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lg---------------Lt~~QVkiWFQNrR~k~~K~~~ 556 (629)
+..+.+|.|+.||+.|+.+||.+|..++||+..+|++||..|| |++.||++||||||++.+|..+
T Consensus 3 ~~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~ 82 (95)
T 2cuf_A 3 SGSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRAN 82 (95)
T ss_dssp SSSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhh
Confidence 4567788999999999999999999999999999999999999 9999999999999997766654
No 36
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=2.5e-17 Score=139.24 Aligned_cols=62 Identities=16% Similarity=0.210 Sum_probs=57.0
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHhC----CCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHh
Q 006832 493 NAKIRRSFHRMPPNAVEKLRQVFAEN----ELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKA 554 (629)
Q Consensus 493 ~~k~kR~r~rft~~Q~~~Le~~F~~~----~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~K~ 554 (629)
..+.+|.|+.||.+|+.+||.+|..+ +||+..++++||..|||++.||+|||||||++.+|.
T Consensus 5 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~ 70 (80)
T 2da4_A 5 SSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLM 70 (80)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhc
Confidence 35567888999999999999999999 999999999999999999999999999999966553
No 37
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.66 E-value=4.4e-17 Score=128.77 Aligned_cols=55 Identities=25% Similarity=0.407 Sum_probs=52.5
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccH
Q 006832 496 IRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYL 550 (629)
Q Consensus 496 ~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k 550 (629)
++|.+++||..|+..||.+|..++||+..++.+||..|||++.||++||||||++
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k 56 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYK 56 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhcc
Confidence 4677899999999999999999999999999999999999999999999999995
No 38
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.66 E-value=3.7e-17 Score=130.94 Aligned_cols=57 Identities=23% Similarity=0.445 Sum_probs=49.7
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhh
Q 006832 499 SFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 555 (629)
Q Consensus 499 ~r~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~K~~ 555 (629)
+|++||.+|+..||.+|..++||+..++..||..|||++.||++||||||++.+|..
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 357899999999999999999999999999999999999999999999999766654
No 39
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.66 E-value=8.8e-17 Score=133.64 Aligned_cols=62 Identities=27% Similarity=0.440 Sum_probs=56.9
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHh
Q 006832 493 NAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKA 554 (629)
Q Consensus 493 ~~k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~K~ 554 (629)
.++.+|.+++||..|+..||.+|..++||+..++..||..|||++.||+|||||||++.+|.
T Consensus 6 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 67 (75)
T 2m0c_A 6 KGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKR 67 (75)
T ss_dssp CSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHH
Confidence 35567889999999999999999999999999999999999999999999999999955544
No 40
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.65 E-value=7.1e-17 Score=136.40 Aligned_cols=55 Identities=18% Similarity=0.311 Sum_probs=50.8
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHh
Q 006832 500 FHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKA 554 (629)
Q Consensus 500 r~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~K~ 554 (629)
+.+||.+|+.+|+.+|..|+||+..+|++||..|||++.||+|||||+|++.++.
T Consensus 7 r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~ 61 (76)
T 2ecc_A 7 GKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHG 61 (76)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHH
Confidence 3568999999999999999999999999999999999999999999999955443
No 41
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.65 E-value=9.8e-17 Score=133.50 Aligned_cols=59 Identities=22% Similarity=0.265 Sum_probs=54.4
Q ss_pred CCCCCCCCHHHHHHHHHHHH-hCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhh
Q 006832 497 RRSFHRMPPNAVEKLRQVFA-ENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 555 (629)
Q Consensus 497 kR~r~rft~~Q~~~Le~~F~-~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~K~~ 555 (629)
++.|++||..|+.+||.+|. .++||+..+++.||..|||++.||+|||||||++.+|..
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 45678899999999999999 599999999999999999999999999999999766655
No 42
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.65 E-value=5.6e-17 Score=132.60 Aligned_cols=58 Identities=31% Similarity=0.519 Sum_probs=54.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHh
Q 006832 497 RRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKA 554 (629)
Q Consensus 497 kR~r~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~K~ 554 (629)
||+|++||+.|+..||.+|..++||+..++..||..|||++.||++||||||++.+|.
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRS 59 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCS
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHh
Confidence 6778999999999999999999999999999999999999999999999999955443
No 43
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.65 E-value=7.9e-17 Score=127.54 Aligned_cols=54 Identities=20% Similarity=0.351 Sum_probs=49.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHh
Q 006832 501 HRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKA 554 (629)
Q Consensus 501 ~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~K~ 554 (629)
+.||..|+..||.+|..++||+..+|.+||..|||++.||++||||||++.+|+
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 579999999999999999999999999999999999999999999999976653
No 44
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.65 E-value=5.1e-17 Score=139.86 Aligned_cols=61 Identities=21% Similarity=0.304 Sum_probs=53.3
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHh
Q 006832 494 AKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKA 554 (629)
Q Consensus 494 ~k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~K~ 554 (629)
.+.+|.|++||..|+.+||.+|..++||+..+|+.||..|||++.||+|||||||++.+|.
T Consensus 26 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 86 (88)
T 2r5y_A 26 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 86 (88)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhh
Confidence 4567888999999999999999999999999999999999999999999999999966554
No 45
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.65 E-value=9.5e-17 Score=139.45 Aligned_cols=55 Identities=11% Similarity=0.235 Sum_probs=50.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhh
Q 006832 501 HRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 555 (629)
Q Consensus 501 ~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~K~~ 555 (629)
.+||.+|+.+||..|..++||+..+|++||..|||++.||+|||||||++.+|..
T Consensus 16 k~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~ 70 (89)
T 2ecb_A 16 KEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKE 70 (89)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCC
T ss_pred ccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHH
Confidence 3789999999999999999999999999999999999999999999999554443
No 46
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.65 E-value=8.6e-17 Score=133.62 Aligned_cols=60 Identities=32% Similarity=0.434 Sum_probs=55.9
Q ss_pred CCCCCCCCHHHHHHHHHHH---HhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhhh
Q 006832 497 RRSFHRMPPNAVEKLRQVF---AENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKARK 556 (629)
Q Consensus 497 kR~r~rft~~Q~~~Le~~F---~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~K~~~ 556 (629)
||++++||..|+..|+.+| ..++||+..++..||..|||++.||++||||+|++.++...
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 64 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIG 64 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccccc
Confidence 6778899999999999999 89999999999999999999999999999999997776653
No 47
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.64 E-value=1.1e-16 Score=132.75 Aligned_cols=58 Identities=24% Similarity=0.304 Sum_probs=53.7
Q ss_pred CCCCCCCHHHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhh
Q 006832 498 RSFHRMPPNAVEKLRQVFAE-NELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 555 (629)
Q Consensus 498 R~r~rft~~Q~~~Le~~F~~-~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~K~~ 555 (629)
+.+++||..|+.+||.+|.. ++||+..+++.||..|||++.||+|||||||++.+|..
T Consensus 3 k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 3 EGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 45688999999999999996 99999999999999999999999999999999766655
No 48
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.64 E-value=9.5e-17 Score=137.49 Aligned_cols=61 Identities=31% Similarity=0.418 Sum_probs=56.0
Q ss_pred CCCCCCCCHHHHHHHHHHH---HhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhhhh
Q 006832 497 RRSFHRMPPNAVEKLRQVF---AENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKARKV 557 (629)
Q Consensus 497 kR~r~rft~~Q~~~Le~~F---~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~K~~~~ 557 (629)
||+|++|+..|+.+|+.+| ..++||+..+|+.||..|||++.||++||||+|++.+|....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccc
Confidence 6778899999999999999 899999999999999999999999999999999987776643
No 49
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.64 E-value=1.3e-16 Score=131.59 Aligned_cols=58 Identities=26% Similarity=0.383 Sum_probs=55.4
Q ss_pred CccccCCCCCCCCHHHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCcchhhhccchhcc
Q 006832 492 SNAKIRRSFHRMPPNAVEKLRQVFAE-NELPSRIVKENLSKELSLEPEKVNKWFKNARY 549 (629)
Q Consensus 492 ~~~k~kR~r~rft~~Q~~~Le~~F~~-~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~ 549 (629)
+.+..||.|+.|+.+|+.+|+.+|+. ++||+...|+.||++|||++++|+|||||+|+
T Consensus 3 ~~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~ 61 (71)
T 1wi3_A 3 SGSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRY 61 (71)
T ss_dssp CCCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhcccee
Confidence 44667899999999999999999999 99999999999999999999999999999999
No 50
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.63 E-value=1.3e-16 Score=139.77 Aligned_cols=62 Identities=21% Similarity=0.300 Sum_probs=54.3
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhh
Q 006832 494 AKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 555 (629)
Q Consensus 494 ~k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~K~~ 555 (629)
...+|.|+.||..|+..||.+|..++||+..+|+.||..|||++.||+|||||||++.+|..
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 93 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRE 93 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHh
Confidence 45677889999999999999999999999999999999999999999999999999766654
No 51
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.63 E-value=5.9e-17 Score=131.21 Aligned_cols=58 Identities=31% Similarity=0.387 Sum_probs=53.3
Q ss_pred cCCCCCCCCHHHHHHHHHHH---HhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHH
Q 006832 496 IRRSFHRMPPNAVEKLRQVF---AENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALK 553 (629)
Q Consensus 496 ~kR~r~rft~~Q~~~Le~~F---~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~K 553 (629)
.++.+++|+..|+..|+.+| ..++||+..++++||..|||++.||++||||+|++.+|
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 35677889999999999999 89999999999999999999999999999999995443
No 52
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.63 E-value=1.4e-16 Score=135.95 Aligned_cols=58 Identities=26% Similarity=0.263 Sum_probs=52.5
Q ss_pred CCCCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhh
Q 006832 498 RSFHRMPPNAVEKLRQVFAE---NELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 555 (629)
Q Consensus 498 R~r~rft~~Q~~~Le~~F~~---~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~K~~ 555 (629)
+++++||..|+..|+.+|.. ++||+..+|..||..|||++.||++||||||++.++..
T Consensus 4 krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~ 64 (83)
T 1le8_B 4 YRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTIT 64 (83)
T ss_dssp -CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccc
Confidence 44566999999999999999 99999999999999999999999999999999665554
No 53
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.63 E-value=1.7e-16 Score=132.00 Aligned_cols=61 Identities=18% Similarity=0.317 Sum_probs=55.2
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhh
Q 006832 495 KIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 555 (629)
Q Consensus 495 k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~K~~ 555 (629)
..++.|+.||.+|+..||.+|..++||+..++++||..|||++.||++||||||++.+|..
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 65 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSK 65 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhC
Confidence 3466788999999999999999999999999999999999999999999999999554443
No 54
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=2.4e-16 Score=132.07 Aligned_cols=59 Identities=24% Similarity=0.442 Sum_probs=53.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhh
Q 006832 497 RRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 555 (629)
Q Consensus 497 kR~r~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~K~~ 555 (629)
.+.|++||.+|+.+||.+|..++||+..+|++||..|||++.||++||||||++.+|..
T Consensus 9 ~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~ 67 (76)
T 2dn0_A 9 SIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLK 67 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhc
Confidence 33468899999999999999999999999999999999999999999999999554443
No 55
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.62 E-value=2.1e-16 Score=126.36 Aligned_cols=53 Identities=30% Similarity=0.337 Sum_probs=50.2
Q ss_pred CCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCcchhhhccchhccHHH
Q 006832 500 FHRMPPNAVEKLRQVFAE---NELPSRIVKENLSKELSLEPEKVNKWFKNARYLAL 552 (629)
Q Consensus 500 r~rft~~Q~~~Le~~F~~---~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~ 552 (629)
+++||..|+.+|+.+|.. ++||+..+++.||..|||++.||++||||+|++.+
T Consensus 2 r~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~k 57 (60)
T 1k61_A 2 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 57 (60)
T ss_dssp CCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred cCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccc
Confidence 468999999999999999 99999999999999999999999999999999544
No 56
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=5.2e-16 Score=134.27 Aligned_cols=56 Identities=21% Similarity=0.421 Sum_probs=50.8
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhh
Q 006832 500 FHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 555 (629)
Q Consensus 500 r~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~K~~ 555 (629)
+.+||.+|+.+||.+|..++||+..+|+.||..|||++.||+|||||||++.++..
T Consensus 17 ~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~ 72 (89)
T 2dmp_A 17 FKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSME 72 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSC
T ss_pred cccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHh
Confidence 34589999999999999999999999999999999999999999999999544444
No 57
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.60 E-value=4e-16 Score=136.54 Aligned_cols=61 Identities=21% Similarity=0.403 Sum_probs=53.6
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHh
Q 006832 494 AKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKA 554 (629)
Q Consensus 494 ~k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~K~ 554 (629)
...+|.|++||..|+..||.+|..++||+..++++||..|||++.||+|||||||++.+|.
T Consensus 23 ~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~ 83 (96)
T 3nar_A 23 SGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNG 83 (96)
T ss_dssp ----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhh
Confidence 3456778999999999999999999999999999999999999999999999999965543
No 58
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.59 E-value=7e-16 Score=132.45 Aligned_cols=58 Identities=28% Similarity=0.299 Sum_probs=53.4
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCcchhhhccchhccHH
Q 006832 494 AKIRRSFHRMPPNAVEKLRQVFAE---NELPSRIVKENLSKELSLEPEKVNKWFKNARYLA 551 (629)
Q Consensus 494 ~k~kR~r~rft~~Q~~~Le~~F~~---~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~ 551 (629)
.++++++++|+..|+..|+.+|.. ++||+..+|+.||..|||++.||++||||||++.
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~ 85 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKE 85 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhc
Confidence 345566789999999999999999 9999999999999999999999999999999943
No 59
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=1.8e-15 Score=134.40 Aligned_cols=65 Identities=25% Similarity=0.336 Sum_probs=58.7
Q ss_pred CccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHh---------------------CCCcchhhhccchhccH
Q 006832 492 SNAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKEL---------------------SLEPEKVNKWFKNARYL 550 (629)
Q Consensus 492 ~~~k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~l---------------------gLt~~QVkiWFQNrR~k 550 (629)
+.+++||.|+.|++.|+.+||.+|..++||+..+|++||..| +|++.||+|||||||++
T Consensus 2 ~~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k 81 (102)
T 2da6_A 2 SSGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 81 (102)
T ss_dssp TTCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHH
Confidence 446678899999999999999999999999999999999999 79999999999999996
Q ss_pred HHHhhh
Q 006832 551 ALKARK 556 (629)
Q Consensus 551 ~~K~~~ 556 (629)
.++..+
T Consensus 82 ~kr~~~ 87 (102)
T 2da6_A 82 EAFRQK 87 (102)
T ss_dssp HHHHHH
T ss_pred HHHhhH
Confidence 655543
No 60
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.57 E-value=1.3e-15 Score=125.27 Aligned_cols=49 Identities=20% Similarity=0.454 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHH
Q 006832 504 PPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLAL 552 (629)
Q Consensus 504 t~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~ 552 (629)
|.+|+.+||..|..++||+..+|.+||..|||+..||++||||||++.+
T Consensus 12 ~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~K 60 (66)
T 3nau_A 12 TKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQ 60 (66)
T ss_dssp CHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhh
Confidence 8999999999999999999999999999999999999999999999444
No 61
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.56 E-value=4.6e-16 Score=129.76 Aligned_cols=55 Identities=22% Similarity=0.349 Sum_probs=50.1
Q ss_pred CCCCCCCHHHHHHHHHHH-HhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHH
Q 006832 498 RSFHRMPPNAVEKLRQVF-AENELPSRIVKENLSKELSLEPEKVNKWFKNARYLAL 552 (629)
Q Consensus 498 R~r~rft~~Q~~~Le~~F-~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~ 552 (629)
+.+.+++..|+.+||.+| ..++||+..+|++||..|||++.||+|||||||++.+
T Consensus 10 k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r 65 (72)
T 2cqx_A 10 KDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDK 65 (72)
T ss_dssp CCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCC
Confidence 344567999999999999 9999999999999999999999999999999999433
No 62
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.56 E-value=1.8e-15 Score=142.37 Aligned_cols=61 Identities=31% Similarity=0.493 Sum_probs=56.2
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHH
Q 006832 493 NAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALK 553 (629)
Q Consensus 493 ~~k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~K 553 (629)
..++||+|+.||..|+..||.+|..++||+..+|..||..|||++.||+|||||||++.+|
T Consensus 90 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 90 PSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 3566788899999999999999999999999999999999999999999999999995543
No 63
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.55 E-value=1.4e-15 Score=142.76 Aligned_cols=61 Identities=30% Similarity=0.409 Sum_probs=53.3
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHH
Q 006832 493 NAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALK 553 (629)
Q Consensus 493 ~~k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~K 553 (629)
..++||+|+.||..|+..||.+|..++||+..+|..||..|||++.||+|||||||++.+|
T Consensus 84 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr 144 (146)
T 1au7_A 84 NERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKR 144 (146)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhc
Confidence 3566778999999999999999999999999999999999999999999999999995544
No 64
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.55 E-value=1.3e-15 Score=145.67 Aligned_cols=62 Identities=24% Similarity=0.293 Sum_probs=50.3
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhh
Q 006832 494 AKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 555 (629)
Q Consensus 494 ~k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~K~~ 555 (629)
.++||+|++||..|+..||.+|..++||+..+|++||..|||++.||+|||||||++.+|..
T Consensus 97 ~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~ 158 (164)
T 2xsd_C 97 GRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMT 158 (164)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSC
T ss_pred ccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhcc
Confidence 55677899999999999999999999999999999999999999999999999999665554
No 65
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.54 E-value=2.2e-15 Score=143.23 Aligned_cols=60 Identities=23% Similarity=0.387 Sum_probs=52.6
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHH
Q 006832 494 AKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALK 553 (629)
Q Consensus 494 ~k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~K 553 (629)
.++||+|+.||..|+.+||.+|..++||+..+|+.||..|||++.||+|||||||++.+|
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr 158 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKR 158 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTS
T ss_pred CCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhc
Confidence 466788999999999999999999999999999999999999999999999999996544
No 66
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.54 E-value=2.7e-15 Score=123.32 Aligned_cols=55 Identities=27% Similarity=0.381 Sum_probs=49.5
Q ss_pred CCCHHHHHHHHHHHH---hCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhhh
Q 006832 502 RMPPNAVEKLRQVFA---ENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKARK 556 (629)
Q Consensus 502 rft~~Q~~~Le~~F~---~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~K~~~ 556 (629)
+||.+|+..|+.+|. .+|||+..+|++||..|||++.||++||||+|++.+|...
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~ 61 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMI 61 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC-
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHH
Confidence 689999999999999 9999999999999999999999999999999997766543
No 67
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.53 E-value=1.5e-15 Score=134.26 Aligned_cols=59 Identities=29% Similarity=0.430 Sum_probs=50.3
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH------------------hC---CCcchhhhccchhccHH
Q 006832 493 NAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKE------------------LS---LEPEKVNKWFKNARYLA 551 (629)
Q Consensus 493 ~~k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~------------------lg---Lt~~QVkiWFQNrR~k~ 551 (629)
.++.||.|+.||+.|+..||.+|..++||+..+|++||.. || |++.||+|||||||++.
T Consensus 6 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~ 85 (99)
T 1lfb_A 6 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 85 (99)
T ss_dssp -------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHH
Confidence 3567888999999999999999999999999999999999 98 99999999999999943
No 68
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=3.9e-15 Score=121.53 Aligned_cols=50 Identities=22% Similarity=0.319 Sum_probs=47.5
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccH
Q 006832 501 HRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYL 550 (629)
Q Consensus 501 ~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k 550 (629)
..++..|+..||.+|..++||+..+|++||..|||++.||+|||||||++
T Consensus 8 ~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak 57 (64)
T 2e19_A 8 QPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAG 57 (64)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCC
Confidence 45689999999999999999999999999999999999999999999993
No 69
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.53 E-value=4.6e-15 Score=123.06 Aligned_cols=54 Identities=28% Similarity=0.475 Sum_probs=50.0
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHh
Q 006832 501 HRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKA 554 (629)
Q Consensus 501 ~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~K~ 554 (629)
..+|..|+.+||..|..++||+..+|.+||..|||++.||+|||||||++.+|.
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~ 62 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRK 62 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCS
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhh
Confidence 468999999999999999999999999999999999999999999999954443
No 70
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.52 E-value=2.9e-15 Score=142.49 Aligned_cols=62 Identities=26% Similarity=0.364 Sum_probs=53.2
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhh
Q 006832 494 AKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 555 (629)
Q Consensus 494 ~k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~K~~ 555 (629)
.+.||+|+.||..|+..|+.+|..++||+..+|++||..|||++.||+|||||||++.++..
T Consensus 95 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 95 NTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC-
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccC
Confidence 55678889999999999999999999999999999999999999999999999999655444
No 71
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.50 E-value=3.4e-15 Score=122.28 Aligned_cols=46 Identities=28% Similarity=0.491 Sum_probs=43.1
Q ss_pred HHHHHHHHHHH-HhCCCCCHHHHHHHHHHhCCCcchhhhccchhccH
Q 006832 505 PNAVEKLRQVF-AENELPSRIVKENLSKELSLEPEKVNKWFKNARYL 550 (629)
Q Consensus 505 ~~Q~~~Le~~F-~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k 550 (629)
+.|+.+||.+| ..++||+..+|.+||.+|||+++||+|||||||++
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k 55 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQ 55 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 45899999999 57899999999999999999999999999999993
No 72
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.49 E-value=8.5e-15 Score=138.63 Aligned_cols=60 Identities=22% Similarity=0.323 Sum_probs=55.6
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHH
Q 006832 494 AKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALK 553 (629)
Q Consensus 494 ~k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~K 553 (629)
.+.||.|+.|+..|+..||.+|..++||+..+|..||..|||++.||+|||||||++.+|
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr 153 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKR 153 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccC
Confidence 456778899999999999999999999999999999999999999999999999995543
No 73
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.40 E-value=2.8e-13 Score=117.62 Aligned_cols=56 Identities=36% Similarity=0.461 Sum_probs=52.0
Q ss_pred CCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhhh
Q 006832 501 HRMPPNAVEKLRQVFAE---NELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKARK 556 (629)
Q Consensus 501 ~rft~~Q~~~Le~~F~~---~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~K~~~ 556 (629)
.-|+..++..|+.||.+ +|||+..+|++||+.+||++.||++||||+|.+.++...
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~ 68 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDML 68 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHH
Confidence 45899999999999998 899999999999999999999999999999998777653
No 74
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.37 E-value=2.7e-13 Score=117.43 Aligned_cols=59 Identities=27% Similarity=0.737 Sum_probs=50.7
Q ss_pred cCCCCcccccccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCCCCCceecccCchhhH
Q 006832 229 ATDGSVHHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCECKME 294 (629)
Q Consensus 229 ~~dg~~~~e~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~k~~ 294 (629)
....+...++++|.+|+.++ +||+||+ |+++||++||.|||..+| .+.|||+.|.....
T Consensus 16 ~~~~~~d~n~~~C~vC~~~g-----~LL~CD~-C~~~fH~~Cl~PpL~~~P-~g~W~C~~C~~~~~ 74 (88)
T 1fp0_A 16 DEFGTLDDSATICRVCQKPG-----DLVMCNQ-CEFCFHLDCHLPALQDVP-GEEWSCSLCHVLPD 74 (88)
T ss_dssp CCCCSSSSSSSCCSSSCSSS-----CCEECTT-SSCEECTTSSSTTCCCCC-SSSCCCCSCCCCCS
T ss_pred ccccccCCCCCcCcCcCCCC-----CEEECCC-CCCceecccCCCCCCCCc-CCCcCCccccCCCc
Confidence 34456677889999999874 7999995 999999999999999999 79999999986544
No 75
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.36 E-value=1.3e-13 Score=119.38 Aligned_cols=63 Identities=22% Similarity=0.635 Sum_probs=51.3
Q ss_pred ccccccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCC----CCCCCceecccCchhhHHHHhh
Q 006832 235 HHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDT----ESRDQGWFCKFCECKMEIIESM 299 (629)
Q Consensus 235 ~~e~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~----~p~dg~W~C~~C~~k~~~l~~~ 299 (629)
..++.+|.+|+.++...++.||+||+ |+++||++||+|||.. +| .+.|||+.|.........+
T Consensus 13 ~e~~~~C~vC~~~~~~~~~~ll~CD~-C~~~yH~~Cl~Ppl~~~~~~~p-~g~W~C~~C~~~~~~~~~~ 79 (88)
T 1wev_A 13 MEMGLACVVCRQMTVASGNQLVECQE-CHNLYHQDCHKPQVTDKEVNDP-RLVWYCARCTRQMKRMAQK 79 (88)
T ss_dssp HHHCCSCSSSCCCCCCTTCCEEECSS-SCCEEETTTSSSCCCHHHHHCT-TCCCCCHHHHHHHCCSTTC
T ss_pred CCCCCcCCCCCCCCCCCCCceEECCC-CCCeEcCccCCCcccccccCCC-CCCeeCccccchhhhhccc
Confidence 34578999999986555689999995 9999999999999985 66 7999999998765544333
No 76
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.36 E-value=1.1e-13 Score=135.79 Aligned_cols=59 Identities=27% Similarity=0.404 Sum_probs=51.8
Q ss_pred CccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhC---------------------CCcchhhhccchhccH
Q 006832 492 SNAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELS---------------------LEPEKVNKWFKNARYL 550 (629)
Q Consensus 492 ~~~k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lg---------------------Lt~~QVkiWFQNrR~k 550 (629)
...+.||.|+.|++.|+.+||.+|..++||+..+|++||..|| |++.||+|||||||++
T Consensus 111 ~~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~ 190 (194)
T 1ic8_A 111 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 190 (194)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHH
T ss_pred ccccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhh
Confidence 4466788899999999999999999999999999999999999 9999999999999984
No 77
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.33 E-value=5.6e-13 Score=132.78 Aligned_cols=61 Identities=30% Similarity=0.496 Sum_probs=52.5
Q ss_pred cCCCccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhC---------------------CCcchhhhccchh
Q 006832 489 KLPSNAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELS---------------------LEPEKVNKWFKNA 547 (629)
Q Consensus 489 ~~~~~~k~kR~r~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lg---------------------Lt~~QVkiWFQNr 547 (629)
..+..++.||.|+.|++.|+.+|+.+|..++||+..+|++||..+| ||+.||++|||||
T Consensus 135 ~~~~~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNR 214 (221)
T 2h8r_A 135 SEPTNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANR 214 (221)
T ss_dssp -------CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHH
T ss_pred cccccCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHh
Confidence 3445567788999999999999999999999999999999999998 8999999999999
Q ss_pred cc
Q 006832 548 RY 549 (629)
Q Consensus 548 R~ 549 (629)
|+
T Consensus 215 R~ 216 (221)
T 2h8r_A 215 RK 216 (221)
T ss_dssp HT
T ss_pred hh
Confidence 98
No 78
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.28 E-value=1e-12 Score=114.61 Aligned_cols=57 Identities=30% Similarity=0.727 Sum_probs=49.6
Q ss_pred CCcccccccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCCCCCceecccCchh
Q 006832 232 GSVHHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCECK 292 (629)
Q Consensus 232 g~~~~e~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~k 292 (629)
.+...++.+|.+|+.++. .+.||+||+ |+++||++||+|||..+| .+.|||+.|...
T Consensus 10 ~~~~~~~~~C~vC~~~~~--~~~ll~CD~-C~~~~H~~Cl~Ppl~~~P-~g~W~C~~C~~~ 66 (92)
T 2e6r_A 10 SAQFIDSYICQVCSRGDE--DDKLLFCDG-CDDNYHIFCLLPPLPEIP-RGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCCCCSSSCCSGG--GGGCEECTT-TCCEECSSSSSSCCSSCC-SSCCCCHHHHHH
T ss_pred hhhccCCCCCccCCCcCC--CCCEEEcCC-CCchhccccCCCCcccCC-CCCcCCccCcCc
Confidence 355677889999998863 568999995 999999999999999999 789999999754
No 79
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=99.27 E-value=1.9e-12 Score=104.73 Aligned_cols=51 Identities=33% Similarity=0.946 Sum_probs=44.9
Q ss_pred cccccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCCCCCceecccCchhh
Q 006832 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCECKM 293 (629)
Q Consensus 236 ~e~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~k~ 293 (629)
.++.+|.+|+.+ +.||+||+ |+++||++||+|||..+| .+.|||+.|..+.
T Consensus 7 ~~~~~C~vC~~~-----g~ll~Cd~-C~~~fH~~Cl~ppl~~~p-~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDG-----GELLCCDT-CPSSYHIHCLNPPLPEIP-NGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCC-----SSCBCCSS-SCCCBCSSSSSSCCSSCC-SSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCC-----CCEEEcCC-CCHHHcccccCCCcCcCC-CCccCChhhcCch
Confidence 457889999975 48999995 999999999999999998 7899999998653
No 80
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.27 E-value=1.5e-12 Score=101.22 Aligned_cols=48 Identities=40% Similarity=0.920 Sum_probs=43.1
Q ss_pred cccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCCCCCceecccCch
Q 006832 240 ICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCEC 291 (629)
Q Consensus 240 ~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~ 291 (629)
+|.+|+.++. ++.||+||+ |+++||++||+|||..+| .+.|||+.|..
T Consensus 2 ~C~vC~~~~~--~~~ll~Cd~-C~~~~H~~Cl~p~l~~~P-~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGE--DDKLILCDE-CNKAFHLFCLRPALYEVP-DGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSC--CSCCEECTT-TCCEECHHHHCTTCCSCC-SSCCSCTTTSC
T ss_pred CCCCCCCCCC--CCCEEECCC-CChhhCcccCCCCcCCCC-CCcEECcCccc
Confidence 6999998763 579999995 999999999999999998 78999999974
No 81
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=99.27 E-value=1.3e-12 Score=107.17 Aligned_cols=50 Identities=36% Similarity=0.828 Sum_probs=44.5
Q ss_pred cccccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCCCCCceecccCchh
Q 006832 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCECK 292 (629)
Q Consensus 236 ~e~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~k 292 (629)
.++++|.+|+.++ +||+||+ |+++||++||+|||..+| .+.|||+.|...
T Consensus 6 ~~~~~C~vC~~~g-----~ll~CD~-C~~~fH~~Cl~ppl~~~P-~g~W~C~~C~~~ 55 (66)
T 1xwh_A 6 KNEDECAVCRDGG-----ELICCDG-CPRAFHLACLSPPLREIP-SGTWRCSSCLQA 55 (66)
T ss_dssp SCCCSBSSSSCCS-----SCEECSS-CCCEECTTTSSSCCSSCC-SSCCCCHHHHHT
T ss_pred CCCCCCccCCCCC-----CEEEcCC-CChhhcccccCCCcCcCC-CCCeECccccCc
Confidence 4678999999763 8999995 999999999999999998 789999999754
No 82
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=99.26 E-value=1.7e-12 Score=104.42 Aligned_cols=51 Identities=33% Similarity=0.898 Sum_probs=45.0
Q ss_pred cccccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCCCCCceecccCchhh
Q 006832 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCECKM 293 (629)
Q Consensus 236 ~e~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~k~ 293 (629)
.++++|.+|+.+ +.||+||+ |+++||+.||+|||..+| .+.|||+.|....
T Consensus 3 ~~~~~C~vC~~~-----g~ll~Cd~-C~~~fH~~Cl~ppl~~~p-~g~W~C~~C~~~~ 53 (60)
T 2puy_A 3 IHEDFCSVCRKS-----GQLLMCDT-CSRVYHLDCLDPPLKTIP-KGMWICPRCQDQM 53 (60)
T ss_dssp CCCSSCTTTCCC-----SSCEECSS-SSCEECGGGSSSCCSSCC-CSCCCCHHHHHHH
T ss_pred CCCCCCcCCCCC-----CcEEEcCC-CCcCEECCcCCCCcCCCC-CCceEChhccChh
Confidence 356899999986 38999995 999999999999999998 7899999997654
No 83
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=99.26 E-value=9.2e-13 Score=107.43 Aligned_cols=55 Identities=31% Similarity=0.788 Sum_probs=46.8
Q ss_pred cccccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCC--C-CCCCceecccCchh
Q 006832 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDT--E-SRDQGWFCKFCECK 292 (629)
Q Consensus 236 ~e~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~--~-p~dg~W~C~~C~~k 292 (629)
.++.+|.+|+.+....++.||+||+ |+++||++||+||+.. + | .+.|||+.|...
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~-C~~~~H~~C~~p~l~~~~~~p-~~~W~C~~C~~~ 61 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDK-CGQGYHQLCHTPHIDSSVIDS-DEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSS-SCCEEETTTSSSCCCHHHHHS-SCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCC-CChHHHhhhCCCcccccccCC-CCCEECCCCcCc
Confidence 4578999999875555689999995 9999999999999986 2 5 789999999754
No 84
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=99.25 E-value=2.8e-12 Score=103.73 Aligned_cols=52 Identities=35% Similarity=0.858 Sum_probs=45.4
Q ss_pred CcccccccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCCCCCceecccCch
Q 006832 233 SVHHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCEC 291 (629)
Q Consensus 233 ~~~~e~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~ 291 (629)
....++.+|.+|+.+ +.||+|| .|+++||++||+||+..+| .+.|||+.|..
T Consensus 6 ~~~~~~~~C~vC~~~-----g~ll~CD-~C~~~fH~~Cl~p~l~~~p-~g~W~C~~C~~ 57 (61)
T 2l5u_A 6 YETDHQDYCEVCQQG-----GEIILCD-TCPRAYHMVCLDPDMEKAP-EGKWSCPHCEK 57 (61)
T ss_dssp CSSCCCSSCTTTSCC-----SSEEECS-SSSCEEEHHHHCTTCCSCC-CSSCCCTTGGG
T ss_pred ccCCCCCCCccCCCC-----CcEEECC-CCChhhhhhccCCCCCCCC-CCceECccccc
Confidence 345567899999975 4899999 5999999999999999988 78999999974
No 85
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=3e-12 Score=106.21 Aligned_cols=45 Identities=22% Similarity=0.353 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhcc
Q 006832 505 PNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARY 549 (629)
Q Consensus 505 ~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~ 549 (629)
.+|+..|+.+|..|+||+.+++..||..|||+.++|+|||||+|+
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa 58 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKV 58 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhccc
Confidence 578999999999999999999999999999999999999999998
No 86
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.23 E-value=6.1e-12 Score=106.46 Aligned_cols=56 Identities=36% Similarity=0.838 Sum_probs=47.4
Q ss_pred CCCcccccccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCCCCC-ceecccCch
Q 006832 231 DGSVHHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQ-GWFCKFCEC 291 (629)
Q Consensus 231 dg~~~~e~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg-~W~C~~C~~ 291 (629)
..|.+.+. +|.+|+..+ +++.||+||+ |+++||++||+|||..+| .+ .|||+.|..
T Consensus 20 ~~w~C~~c-~C~vC~~~~--~~~~ll~CD~-C~~~yH~~Cl~Ppl~~~P-~g~~W~C~~C~~ 76 (77)
T 2e6s_A 20 PEKKCHSC-SCRVCGGKH--EPNMQLLCDE-CNVAYHIYCLNPPLDKVP-EEEYWYCPSCKT 76 (77)
T ss_dssp SSSCCSSS-SCSSSCCCC--CSTTEEECSS-SCCEEETTSSSSCCSSCC-CSSCCCCTTTCC
T ss_pred CCeECCCC-CCcCcCCcC--CCCCEEEcCC-CCccccccccCCCccCCC-CCCCcCCcCccC
Confidence 34666665 899999864 3679999995 999999999999999999 67 999999963
No 87
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.21 E-value=4.1e-12 Score=100.88 Aligned_cols=49 Identities=35% Similarity=0.917 Sum_probs=43.5
Q ss_pred cccccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCCCCCceecccCch
Q 006832 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCEC 291 (629)
Q Consensus 236 ~e~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~ 291 (629)
.++++|.+|+.++ .||+|| .|+++||+.||+|||..+| .+.|||+.|..
T Consensus 7 ~~~~~C~vC~~~g-----~ll~Cd-~C~~~~H~~Cl~ppl~~~p-~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKSG-----QLLMCD-TCSRVYHLDCLDPPLKTIP-KGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCSS-----CCEECS-SSSCEECSSSSSSCCCSCC-CSSCCCHHHHC
T ss_pred CCCCCCccCCCCC-----eEEEcC-CCCcceECccCCCCcCCCC-CCceEChhhhC
Confidence 4578999999863 899999 5999999999999999998 78999999963
No 88
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=99.21 E-value=5.4e-12 Score=103.80 Aligned_cols=49 Identities=27% Similarity=0.618 Sum_probs=43.0
Q ss_pred cccccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCCCCCceecccCch
Q 006832 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCEC 291 (629)
Q Consensus 236 ~e~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~ 291 (629)
.....|.+|+.+ ++||+|| .|+++||++||+|||..+| .+.|||+.|..
T Consensus 10 ~~~~~C~vC~~~-----~~ll~Cd-~C~~~~H~~Cl~P~l~~~P-~g~W~C~~C~~ 58 (66)
T 2lri_C 10 APGARCGVCGDG-----TDVLRCT-HCAAAFHWRCHFPAGTSRP-GTGLRCRSCSG 58 (66)
T ss_dssp CTTCCCTTTSCC-----TTCEECS-SSCCEECHHHHCTTTCCCC-SSSCCCTTTTT
T ss_pred CCCCCcCCCCCC-----CeEEECC-CCCCceecccCCCccCcCC-CCCEECccccC
Confidence 345679999875 4799999 5999999999999999999 78999999974
No 89
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=99.21 E-value=6.4e-12 Score=104.41 Aligned_cols=56 Identities=32% Similarity=0.816 Sum_probs=47.4
Q ss_pred CCCcccccccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCCCCC-ceecccCch
Q 006832 231 DGSVHHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQ-GWFCKFCEC 291 (629)
Q Consensus 231 dg~~~~e~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg-~W~C~~C~~ 291 (629)
..|..... +|.+|+..+. ++.||+||+ |+++||++||+|||..+| .+ .|||+.|..
T Consensus 12 ~~w~C~~C-~C~~C~~~~~--~~~ll~CD~-C~~~yH~~Cl~Ppl~~~P-~g~~W~C~~C~~ 68 (70)
T 3asl_A 12 VNRLCRVC-ACHLCGGRQD--PDKQLMCDE-CDMAFHIYCLDPPLSSVP-SEDEWYCPECRN 68 (70)
T ss_dssp TTSCCTTT-SBTTTCCCSC--GGGEEECTT-TCCEEEGGGSSSCCSSCC-SSSCCCCTTTSC
T ss_pred CCeECCCC-CCcCCCCcCC--CCCEEEcCC-CCCceecccCCCCcCCCC-CCCCcCCcCccC
Confidence 34666666 8889997643 679999995 999999999999999999 67 999999974
No 90
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=99.20 E-value=3.5e-12 Score=106.35 Aligned_cols=54 Identities=33% Similarity=0.755 Sum_probs=46.2
Q ss_pred cccccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCCCCCceecccCchhh
Q 006832 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCECKM 293 (629)
Q Consensus 236 ~e~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~k~ 293 (629)
.++.+|.+|+.++...++.||+||+ |+++||++||+||+ +| .+.|||+.|....
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~-C~~~~H~~Cl~~~~--vP-~g~W~C~~C~~~~ 67 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDM-CNLAVHQECYGVPY--IP-EGQWLCRHCLQSR 67 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSS-SCCEEEHHHHTCSS--CC-SSCCCCHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCC-CCCccccccCCCCc--CC-CCCcCCccCcCcC
Confidence 4578999999887556789999995 99999999999985 56 6899999998653
No 91
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=99.18 E-value=3.8e-12 Score=110.20 Aligned_cols=55 Identities=33% Similarity=0.728 Sum_probs=46.7
Q ss_pred ccccccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCCCCCceecccCchhh
Q 006832 235 HHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCECKM 293 (629)
Q Consensus 235 ~~e~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~k~ 293 (629)
..++.+|.+|+.++...++.||+||+ |+.+||++||+||+ +| .+.|||+.|....
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~-C~~~fH~~Cl~p~~--vP-~g~W~C~~C~~~~ 76 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDM-CNLAVHQECYGVPY--IP-EGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSS-SCCCCCHHHHTCSS--CC-SSCCCCHHHHHHT
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCC-CCchhhcccCCCCc--cC-CCceECccccCcc
Confidence 34678999999887556789999995 99999999999996 56 6899999998653
No 92
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=99.13 E-value=2.2e-11 Score=103.08 Aligned_cols=56 Identities=32% Similarity=0.821 Sum_probs=47.2
Q ss_pred CCCcccccccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCCCCCc-eecccCch
Q 006832 231 DGSVHHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQG-WFCKFCEC 291 (629)
Q Consensus 231 dg~~~~e~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~-W~C~~C~~ 291 (629)
..|.+... .|.+|+..+. ++.||+||+ |+++||++||+|||..+| .+. |||+.|..
T Consensus 20 ~~W~C~~C-~C~vC~~~~d--~~~ll~CD~-C~~~yH~~Cl~PpL~~~P-~g~~W~C~~C~~ 76 (77)
T 3shb_A 20 VNRLCRVC-ACHLCGGRQD--PDKQLMCDE-CDMAFHIYCLDPPLSSVP-SEDEWYCPECRN 76 (77)
T ss_dssp TTSCCTTT-SBTTTCCCSC--GGGEEECTT-TCCEEETTTSSSCCSSCC-SSSCCCCTTTC-
T ss_pred CCCCCCCC-cCCccCCCCC--CcceeEeCC-CCCccCcccCCCcccCCC-CCCceECcCccc
Confidence 34667777 7899988753 679999995 999999999999999999 677 99999974
No 93
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.13 E-value=2.2e-11 Score=117.65 Aligned_cols=50 Identities=28% Similarity=0.719 Sum_probs=44.4
Q ss_pred cccccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCCCCCceecccCchh
Q 006832 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCECK 292 (629)
Q Consensus 236 ~e~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~k 292 (629)
.++++|.+|+.+| +||+||+ |+++||+.||.||+...| .+.|+|+.|...
T Consensus 2 ~~~~~C~~C~~~g-----~ll~Cd~-C~~~~H~~C~~p~l~~~p-~~~W~C~~C~~~ 51 (184)
T 3o36_A 2 PNEDWCAVCQNGG-----ELLCCEK-CPKVFHLSCHVPTLTNFP-SGEWICTFCRDL 51 (184)
T ss_dssp CSCSSCTTTCCCS-----SCEECSS-SSCEECTTTSSSCCSSCC-SSCCCCTTTSCS
T ss_pred CCCCccccCCCCC-----eeeecCC-CCcccCccccCCCCCCCC-CCCEECccccCc
Confidence 3578999999764 7999995 999999999999999998 789999999854
No 94
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.11 E-value=2.2e-11 Score=119.87 Aligned_cols=50 Identities=30% Similarity=0.718 Sum_probs=44.8
Q ss_pred cccccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCCCCCceecccCchh
Q 006832 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCECK 292 (629)
Q Consensus 236 ~e~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~k 292 (629)
.++++|.+|+.+| +||+||+ |+++||+.||+||+..+| .|.|+|+.|...
T Consensus 5 ~~~~~C~~C~~~g-----~ll~Cd~-C~~~~H~~Cl~p~l~~~p-~~~W~C~~C~~~ 54 (207)
T 3u5n_A 5 PNEDWCAVCQNGG-----DLLCCEK-CPKVFHLTCHVPTLLSFP-SGDWICTFCRDI 54 (207)
T ss_dssp SSCSSBTTTCCCE-----EEEECSS-SSCEECTTTSSSCCSSCC-SSCCCCTTTSCS
T ss_pred CCCCCCCCCCCCC-----ceEEcCC-CCCccCCccCCCCCCCCC-CCCEEeCceeCc
Confidence 4578999999775 7999995 999999999999999999 789999999854
No 95
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.10 E-value=2.2e-11 Score=127.82 Aligned_cols=54 Identities=28% Similarity=0.413 Sum_probs=50.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccH
Q 006832 497 RRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYL 550 (629)
Q Consensus 497 kR~r~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k 550 (629)
++.+..|+..|+..|++.|..++||+..+|++||++|||+++||+|||||||+|
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~ 419 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMR 419 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCC
T ss_pred hhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccc
Confidence 445567899999999999999999999999999999999999999999999984
No 96
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=99.09 E-value=4.2e-11 Score=119.75 Aligned_cols=55 Identities=33% Similarity=0.848 Sum_probs=43.0
Q ss_pred CCcccccccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCCCCC-ceecccCch
Q 006832 232 GSVHHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQ-GWFCKFCEC 291 (629)
Q Consensus 232 g~~~~e~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg-~W~C~~C~~ 291 (629)
.|.+..+ +|.+|+..+. ++.||+||+ |+++||++||+|||..+| .| .|||+.|..
T Consensus 169 ~w~C~~c-~C~vC~~~~~--~~~lL~CD~-C~~~yH~~CL~PPL~~vP-~G~~W~Cp~C~~ 224 (226)
T 3ask_A 169 NRLCRVC-ACHLCGGRQD--PDKQLMCDE-CDMAFHIYCLDPPLSSVP-SEDEWYCPECRN 224 (226)
T ss_dssp TSCCTTT-SCSSSCCCCC----CCEECSS-SCCEECSCC--CCCCSCC-SSSCCCCGGGC-
T ss_pred CEecCCC-CCcCCCCCCC--CCCeEEcCC-CCcceeCccCCCCcccCC-CCCCCCCcCCcC
Confidence 3555555 8999998753 679999995 999999999999999999 67 999999974
No 97
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=99.08 E-value=4.2e-11 Score=107.95 Aligned_cols=61 Identities=28% Similarity=0.691 Sum_probs=52.5
Q ss_pred cCCCCcccccccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCCCCCceecccCchhh
Q 006832 229 ATDGSVHHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCECKM 293 (629)
Q Consensus 229 ~~dg~~~~e~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~k~ 293 (629)
....|.+.+..+|.+|+..+. ++.||+||+ |+++||++||+|||..+| .+.|||+.|....
T Consensus 49 ~~~~W~C~~C~~C~~C~~~~~--~~~ll~Cd~-C~~~yH~~Cl~ppl~~~P-~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 49 KTYKWQCIECKSCILCGTSEN--DDQLLFCDD-CDRGYHMYCLNPPVAEPP-EGSWSCHLCWELL 109 (114)
T ss_dssp HHTTCCCGGGCCCTTTTCCTT--TTTEEECSS-SCCEEETTTSSSCCSSCC-SSCCCCHHHHHHH
T ss_pred CCCccCccccCccCcccccCC--CCceEEcCC-CCccccccccCCCccCCC-CCCeECccccchh
Confidence 455688888889999998753 679999995 999999999999999999 7899999997543
No 98
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=99.07 E-value=7.1e-11 Score=106.06 Aligned_cols=60 Identities=27% Similarity=0.712 Sum_probs=52.1
Q ss_pred cCCCCcccccccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCCCCCceecccCch
Q 006832 229 ATDGSVHHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCEC 291 (629)
Q Consensus 229 ~~dg~~~~e~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~ 291 (629)
....|.+.+..+|.+|+..+. +++.||+|| .|+++||++||+|||..+| .+.|||+.|..
T Consensus 52 ~~~~W~C~~C~~C~vC~~~~~-~~~~ll~Cd-~C~~~yH~~Cl~p~l~~~P-~~~W~C~~C~~ 111 (112)
T 3v43_A 52 KALRWQCIECKTCSSCRDQGK-NADNMLFCD-SCDRGFHMECCDPPLTRMP-KGMWICQICRP 111 (112)
T ss_dssp HTSCCCCTTTCCBTTTCCCCC-TTCCCEECT-TTCCEECGGGCSSCCSSCC-SSCCCCTTTSC
T ss_pred hccccccccCCccccccCcCC-CccceEEcC-CCCCeeecccCCCCCCCCC-CCCeECCCCCC
Confidence 456788888999999998642 357899999 5999999999999999999 78999999975
No 99
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.02 E-value=9.1e-11 Score=114.42 Aligned_cols=48 Identities=31% Similarity=0.861 Sum_probs=43.2
Q ss_pred cccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCCCCCceecccCchh
Q 006832 238 HIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCECK 292 (629)
Q Consensus 238 ~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~k 292 (629)
+++|.+|+.++ +||+||+ |+++||++||.||+...| .|.|+|+.|...
T Consensus 2 ~~~C~~C~~~g-----~ll~Cd~-C~~~~H~~Cl~p~l~~~p-~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKPG-----DLVMCNQ-CEFCFHLDCHLPALQDVP-GEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCCS-----SCCCCTT-TCCBCCSTTSTTCCSSCC-CTTCCTTTTSCS
T ss_pred CCcCccCCCCC-----ceeECCC-CCchhccccCCCCcccCC-CCCCCCcCccCC
Confidence 46899999764 7999995 999999999999999998 799999999854
No 100
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=99.01 E-value=1.4e-10 Score=96.79 Aligned_cols=55 Identities=24% Similarity=0.655 Sum_probs=46.3
Q ss_pred ccccccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCCCCCceecccCchhh
Q 006832 235 HHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCECKM 293 (629)
Q Consensus 235 ~~e~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~k~ 293 (629)
..+..+|.+|+..+. +..||+||+ |+.+||+.|+++++...+ .+.|||+.|..+.
T Consensus 15 ~~~~~~C~~C~~~~~--~~~mi~CD~-C~~wfH~~Cv~~~~~~~~-~~~w~C~~C~~~~ 69 (75)
T 2k16_A 15 GNQIWICPGCNKPDD--GSPMIGCDD-CDDWYHWPCVGIMAAPPE-EMQWFCPKCANKI 69 (75)
T ss_dssp SCEEECBTTTTBCCS--SCCEEECSS-SSSEEEHHHHTCSSCCCS-SSCCCCTTTHHHH
T ss_pred CCCCcCCCCCCCCCC--CCCEEEcCC-CCcccccccCCCCccCCC-CCCEEChhccCch
Confidence 345688999998753 457999995 999999999999998877 6899999997653
No 101
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.95 E-value=3.6e-10 Score=100.87 Aligned_cols=60 Identities=32% Similarity=0.774 Sum_probs=52.1
Q ss_pred cCCCCcccccccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCCCCCceecccCchh
Q 006832 229 ATDGSVHHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCECK 292 (629)
Q Consensus 229 ~~dg~~~~e~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~k 292 (629)
....|...+..+|.+|+..+. ++.||+|| .|+++||++||+|||..+| .+.|||+.|...
T Consensus 45 ~~~~W~C~~C~~C~~C~~~~~--~~~ll~Cd-~C~~~yH~~Cl~ppl~~~P-~g~W~C~~C~~c 104 (111)
T 2ysm_A 45 KRAGWQCPECKVCQNCKQSGE--DSKMLVCD-TCDKGYHTFCLQPVMKSVP-TNGWKCKNCRIC 104 (111)
T ss_dssp TSTTCCCTTTCCCTTTCCCSC--CTTEEECS-SSCCEEEGGGSSSCCSSCC-SSCCCCHHHHCC
T ss_pred cccCccCCcCCcccccCccCC--CCCeeECC-CCCcHHhHHhcCCccccCC-CCCcCCcCCcCc
Confidence 346788888889999998764 56899999 5999999999999999999 789999999754
No 102
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=98.83 E-value=2.3e-09 Score=94.39 Aligned_cols=55 Identities=22% Similarity=0.572 Sum_probs=44.0
Q ss_pred CCcccccccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCCCCCceecccCchh
Q 006832 232 GSVHHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCECK 292 (629)
Q Consensus 232 g~~~~e~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~k 292 (629)
|....+.+.| +|+..+. ++.||+|| .|+.+||+.|++|++..+| ..|||+.|..+
T Consensus 22 g~~~~d~vrC-iC~~~~~--~~~mi~Cd-~C~~w~H~~C~~~~~~~~p--~~w~C~~C~~~ 76 (98)
T 2lv9_A 22 GSYGTDVTRC-ICGFTHD--DGYMICCD-KCSVWQHIDCMGIDRQHIP--DTYLCERCQPR 76 (98)
T ss_dssp CCCCCCBCCC-TTSCCSC--SSCEEEBT-TTCBEEETTTTTCCTTSCC--SSBCCTTTSSS
T ss_pred CCCCCCCEEe-ECCCccC--CCcEEEcC-CCCCcCcCcCCCCCccCCC--CCEECCCCcCC
Confidence 3334445668 7887653 67999999 5999999999999998887 48999999754
No 103
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=98.69 E-value=6.7e-09 Score=93.01 Aligned_cols=49 Identities=29% Similarity=0.763 Sum_probs=42.3
Q ss_pred ccccccccccccCcCCCCCCceEeC--CcCCcccccccCCCCCCCCCCCCceecccCchh
Q 006832 235 HHEHIICAKCKLREAFPDNDIVLCD--GTCNCAFHQKCLDPPLDTESRDQGWFCKFCECK 292 (629)
Q Consensus 235 ~~e~~~C~vC~~~g~~~~~~lLlCD--G~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~k 292 (629)
..++++|.+|+.+ ++||+|| + |+++||+.||+ |..+| .|.|||+.|.+.
T Consensus 12 ~~~~~~C~~C~~~-----G~ll~CD~~~-Cp~~fH~~Cl~--L~~~P-~g~W~Cp~c~C~ 62 (107)
T 4gne_A 12 QMHEDYCFQCGDG-----GELVMCDKKD-CPKAYHLLCLN--LTQPP-YGKWECPWHQCD 62 (107)
T ss_dssp CSSCSSCTTTCCC-----SEEEECCSTT-CCCEECTGGGT--CSSCC-SSCCCCGGGBCT
T ss_pred CCCCCCCCcCCCC-----CcEeEECCCC-CCcccccccCc--CCcCC-CCCEECCCCCCC
Confidence 4567899999965 4899999 6 99999999999 78888 799999999754
No 104
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.60 E-value=2.9e-08 Score=88.51 Aligned_cols=56 Identities=27% Similarity=0.552 Sum_probs=46.5
Q ss_pred cccccccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCCCCCceecccCchhh
Q 006832 234 VHHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCECKM 293 (629)
Q Consensus 234 ~~~e~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~k~ 293 (629)
...++++|.+|+.++. .++||+|+ .|+++||+.||+|++..++ .+.|+|+.|....
T Consensus 3 ~~~~~~~C~~C~~~g~--~~~ll~C~-~C~~~~H~~Cl~~~~~~~~-~~~W~C~~C~~C~ 58 (111)
T 2ysm_A 3 SGSSGANCAVCDSPGD--LLDQFFCT-TCGQHYHGMCLDIAVTPLK-RAGWQCPECKVCQ 58 (111)
T ss_dssp CCCCCSCBTTTCCCCC--TTTSEECS-SSCCEECTTTTTCCCCTTT-STTCCCTTTCCCT
T ss_pred CCCCCCCCcCCCCCCC--CcCCeECC-CCCCCcChHHhCCcccccc-ccCccCCcCCccc
Confidence 3457789999999873 35789999 5999999999999988776 6899999997443
No 105
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=98.59 E-value=5.8e-09 Score=97.71 Aligned_cols=52 Identities=25% Similarity=0.676 Sum_probs=44.1
Q ss_pred ccccccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCC-------CCCCCceecccCchhh
Q 006832 235 HHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDT-------ESRDQGWFCKFCECKM 293 (629)
Q Consensus 235 ~~e~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~-------~p~dg~W~C~~C~~k~ 293 (629)
+..+++|.+|+.+| +||+|| .|+++||+.||.||+.. .| .+.|+|+.|...+
T Consensus 60 Dg~~d~C~vC~~GG-----~LlcCD-~Cpr~Fh~~Cl~p~l~~~~l~~i~~p-~~~W~C~~C~~~p 118 (142)
T 2lbm_A 60 DGMDEQCRWCAEGG-----NLICCD-FCHNAFCKKCILRNLGRKELSTIMDE-NNQWYCYICHPEP 118 (142)
T ss_dssp TSCBCSCSSSCCCS-----SEEECS-SSCCEEEHHHHHHHTCHHHHHHHHTS-TTCCCCTTTCCCT
T ss_pred CCCCCeecccCCCC-----cEEeCC-CCCCeeeHhhcCCCCChhhhhhcccC-CCCCEeecccCcc
Confidence 34578999999875 799999 69999999999999973 34 6899999998754
No 106
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.51 E-value=8.9e-08 Score=83.44 Aligned_cols=49 Identities=31% Similarity=0.769 Sum_probs=39.5
Q ss_pred cccccccccccCcCCCCCCceEeCCc--CC-cccccccCCCCCCCCCCCCceecccCchh
Q 006832 236 HEHIICAKCKLREAFPDNDIVLCDGT--CN-CAFHQKCLDPPLDTESRDQGWFCKFCECK 292 (629)
Q Consensus 236 ~e~~~C~vC~~~g~~~~~~lLlCDG~--C~-rafH~~CL~PPL~~~p~dg~W~C~~C~~k 292 (629)
.+..+| +|+... .+.||+|| . |+ .|||+.|++ |...| .+.|||+.|...
T Consensus 34 ~e~~yC-iC~~~~---~g~MI~CD-~~dC~~~WfH~~CVg--l~~~p-~g~W~Cp~C~~~ 85 (91)
T 1weu_A 34 NEPTYC-LCHQVS---YGEMIGCD-NPDCSIEWFHFACVG--LTTKP-RGKWFCPRCSQE 85 (91)
T ss_dssp CCCBCS-TTCCBC---CSCCCCCS-CSSCSCCCCCSTTTT--CSSCC-CSSCCCTTTCCC
T ss_pred CCCcEE-ECCCCC---CCCEeEec-CCCCCCCCEecccCC--cCcCC-CCCEECcCccCc
Confidence 456788 999865 36899999 6 66 799999999 55666 589999999754
No 107
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=98.49 E-value=2.7e-08 Score=80.16 Aligned_cols=48 Identities=31% Similarity=0.776 Sum_probs=38.4
Q ss_pred ccccccccccCcCCCCCCceEeCCc--CC-cccccccCCCCCCCCCCCCceecccCchh
Q 006832 237 EHIICAKCKLREAFPDNDIVLCDGT--CN-CAFHQKCLDPPLDTESRDQGWFCKFCECK 292 (629)
Q Consensus 237 e~~~C~vC~~~g~~~~~~lLlCDG~--C~-rafH~~CL~PPL~~~p~dg~W~C~~C~~k 292 (629)
+..+| +|+... .+.||+|| . |+ .+||+.|++ |...| .+.|||+.|..+
T Consensus 9 e~~~C-~C~~~~---~g~mi~CD-~cdC~~~wfH~~Cvg--l~~~p-~g~w~C~~C~~~ 59 (60)
T 2vnf_A 9 EPTYC-LCHQVS---YGEMIGCD-NPDCSIEWFHFACVG--LTTKP-RGKWFCPRCSQE 59 (60)
T ss_dssp CCEET-TTTEEC---CSEEEECS-CTTCSSCEEETGGGT--CSSCC-SSCCCCHHHHC-
T ss_pred CCCEE-ECCCcC---CCCEEEeC-CCCCCCceEehhcCC--CCcCC-CCCEECcCccCc
Confidence 45788 899865 36899999 6 55 799999999 66677 689999999754
No 108
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=98.47 E-value=6.6e-08 Score=80.48 Aligned_cols=49 Identities=31% Similarity=0.769 Sum_probs=39.7
Q ss_pred cccccccccccCcCCCCCCceEeCCc--CC-cccccccCCCCCCCCCCCCceecccCchh
Q 006832 236 HEHIICAKCKLREAFPDNDIVLCDGT--CN-CAFHQKCLDPPLDTESRDQGWFCKFCECK 292 (629)
Q Consensus 236 ~e~~~C~vC~~~g~~~~~~lLlCDG~--C~-rafH~~CL~PPL~~~p~dg~W~C~~C~~k 292 (629)
.+..+| +|+... .+.||+|| . |+ .+||+.|++ |...| .+.|||+.|...
T Consensus 14 ~~~~~C-~C~~~~---~g~MI~CD-~~~C~~~wfH~~Cvg--l~~~p-~g~w~Cp~C~~~ 65 (71)
T 1wen_A 14 NEPTYC-LCHQVS---YGEMIGCD-NPDCSIEWFHFACVG--LTTKP-RGKWFCPRCSQE 65 (71)
T ss_dssp TSCCCS-TTCCCS---CSSEECCS-CSSCSCCCEETTTTT--CSSCC-SSCCCCTTTSSC
T ss_pred CCCCEE-ECCCCC---CCCEeEee-CCCCCCccEecccCC--cCcCC-CCCEECCCCCcc
Confidence 356789 799864 36899999 7 77 699999999 66666 689999999754
No 109
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=98.45 E-value=3.8e-08 Score=79.10 Aligned_cols=48 Identities=33% Similarity=0.787 Sum_probs=38.9
Q ss_pred ccccccccccCcCCCCCCceEeCCc--CC-cccccccCCCCCCCCCCCCceecccCchh
Q 006832 237 EHIICAKCKLREAFPDNDIVLCDGT--CN-CAFHQKCLDPPLDTESRDQGWFCKFCECK 292 (629)
Q Consensus 237 e~~~C~vC~~~g~~~~~~lLlCDG~--C~-rafH~~CL~PPL~~~p~dg~W~C~~C~~k 292 (629)
+..+| +|+... .+.||.|| . |+ .+||+.|++ |...| .+.|||+.|..+
T Consensus 8 e~~yC-~C~~~~---~g~mi~CD-~~~C~~~wfH~~Cvg--l~~~p-~~~w~Cp~C~~~ 58 (59)
T 3c6w_A 8 EPTYC-LCHQVS---YGEMIGCD-NPDCPIEWFHFACVD--LTTKP-KGKWFCPRCVQE 58 (59)
T ss_dssp CCEET-TTTEEC---CSEEEECS-CTTCSSCEEETGGGT--CSSCC-SSCCCCHHHHCC
T ss_pred CCcEE-ECCCCC---CCCeeEee-CCCCCCCCEecccCC--cccCC-CCCEECcCccCc
Confidence 45788 899864 36899999 7 76 699999999 66666 689999999653
No 110
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=98.42 E-value=8e-08 Score=83.58 Aligned_cols=47 Identities=28% Similarity=0.714 Sum_probs=38.0
Q ss_pred cccccccccccCcCCCCCCceEeCCcCC---cccccccCCCCCCCCCCCCceeccc-Cc
Q 006832 236 HEHIICAKCKLREAFPDNDIVLCDGTCN---CAFHQKCLDPPLDTESRDQGWFCKF-CE 290 (629)
Q Consensus 236 ~e~~~C~vC~~~g~~~~~~lLlCDG~C~---rafH~~CL~PPL~~~p~dg~W~C~~-C~ 290 (629)
.+..+| +|+... .+.||+|| .|+ .|||+.|++ |...| .+.|||+. |.
T Consensus 24 ~~~~yC-iC~~~~---~g~MI~CD-~c~C~~eWfH~~CVg--l~~~p-~~~W~Cp~cC~ 74 (90)
T 2jmi_A 24 QEEVYC-FCRNVS---YGPMVACD-NPACPFEWFHYGCVG--LKQAP-KGKWYCSKDCK 74 (90)
T ss_dssp CCSCCS-TTTCCC---SSSEECCC-SSSCSCSCEETTTSS--CSSCT-TSCCCSSHHHH
T ss_pred CCCcEE-EeCCCC---CCCEEEec-CCCCccccCcCccCC--CCcCC-CCCccCChhhc
Confidence 456789 899864 35799999 577 899999999 55666 68999999 86
No 111
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=98.35 E-value=9.3e-08 Score=77.61 Aligned_cols=48 Identities=27% Similarity=0.732 Sum_probs=38.0
Q ss_pred ccccccccccCcCCCCCCceEeCCc--CC-cccccccCCCCCCCCCCCCceecccCchh
Q 006832 237 EHIICAKCKLREAFPDNDIVLCDGT--CN-CAFHQKCLDPPLDTESRDQGWFCKFCECK 292 (629)
Q Consensus 237 e~~~C~vC~~~g~~~~~~lLlCDG~--C~-rafH~~CL~PPL~~~p~dg~W~C~~C~~k 292 (629)
+..+| +|+... .+.||.|| . |+ .+||+.|++ |...| .+.|||+.|...
T Consensus 10 e~~yC-~C~~~~---~g~MI~CD-~c~C~~~WfH~~Cvg--l~~~p-~~~w~Cp~C~~~ 60 (62)
T 2g6q_A 10 EPTYC-LCNQVS---YGEMIGCD-NEQCPIEWFHFSCVS--LTYKP-KGKWYCPKCRGD 60 (62)
T ss_dssp CCEET-TTTEEC---CSEEEECS-CTTCSSCEEETGGGT--CSSCC-SSCCCCHHHHTC
T ss_pred CCcEE-ECCCCC---CCCeeeee-CCCCCcccEecccCC--cCcCC-CCCEECcCcccC
Confidence 45788 899864 35899999 6 44 999999999 45556 689999999753
No 112
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=98.28 E-value=2.2e-07 Score=75.06 Aligned_cols=56 Identities=25% Similarity=0.457 Sum_probs=43.0
Q ss_pred cccccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCCCCCceecccCchhh
Q 006832 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCECKM 293 (629)
Q Consensus 236 ~e~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~k~ 293 (629)
.+..+|.+|+.... +++.||.|| .|..|||..|++...........|+|+.|..+.
T Consensus 4 ~e~~~C~~C~~~~~-~~~~mI~Cd-~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~ 59 (64)
T 1we9_A 4 GSSGQCGACGESYA-ADEFWICCD-LCEMWFHGKCVKITPARAEHIKQYKCPSCSNKS 59 (64)
T ss_dssp SSCCCCSSSCCCCC-SSSCEEECS-SSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTT
T ss_pred CCCCCCCCCCCccC-CCCCEEEcc-CCCCCCCccccCcChhHhcCCCcEECCCCcCcC
Confidence 45678999998752 346899999 599999999999765543212689999998653
No 113
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=98.21 E-value=8.5e-08 Score=88.48 Aligned_cols=53 Identities=26% Similarity=0.629 Sum_probs=43.5
Q ss_pred ccccccccccccCcCCCCCCceEeCCcCCcccccccCCCCCC-----CC--CCCCceecccCchhhH
Q 006832 235 HHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLD-----TE--SRDQGWFCKFCECKME 294 (629)
Q Consensus 235 ~~e~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~-----~~--p~dg~W~C~~C~~k~~ 294 (629)
+..+.+|.+|+.++ +||+|| .|+++||..|+.|++. .+ | .+.|+|..|..++.
T Consensus 54 Dg~~~~C~vC~dGG-----~LlcCd-~Cpr~Fc~~Cl~~~lg~~~l~~i~~~-~~~W~C~~C~~~pl 113 (129)
T 3ql9_A 54 DGMDEQCRWCAEGG-----NLICCD-FCHNAFCKKCILRNLGRRELSTIMDE-NNQWYCYICHPEPL 113 (129)
T ss_dssp TSCBSSCTTTCCCS-----EEEECS-SSSCEEEHHHHHHHTCHHHHHHHTCT-TSCCCCTTTCCGGG
T ss_pred CCCCCcCeecCCCC-----eeEecC-CCchhhhHHHhCCCcchhHHHHhccC-CCCeEcCCcCCHHH
Confidence 34567899999875 899999 5999999999999864 22 4 68999999987653
No 114
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=98.15 E-value=9.4e-07 Score=72.91 Aligned_cols=52 Identities=17% Similarity=0.443 Sum_probs=41.8
Q ss_pred cccccccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCCCCCceecccCch
Q 006832 234 VHHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCEC 291 (629)
Q Consensus 234 ~~~e~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~ 291 (629)
...+..+| +|+.... ++.||.|| .|..|||..|++......| ..|+|+.|..
T Consensus 15 ~~~~~~~C-iC~~~~~--~~~MIqCd-~C~~WfH~~Cvgi~~~~~~--~~~~C~~C~~ 66 (68)
T 3o70_A 15 YFQGLVTC-FCMKPFA--GRPMIECN-ECHTWIHLSCAKIRKSNVP--EVFVCQKCRD 66 (68)
T ss_dssp TTTTCCCS-TTCCCCT--TCCEEECT-TTCCEEETTTTTCCTTSCC--SSCCCHHHHT
T ss_pred CCCCceEe-ECCCcCC--CCCEEECC-CCCccccccccCcCcccCC--CcEECCCCCC
Confidence 34456789 9998753 56799999 5999999999998776555 6899999963
No 115
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.13 E-value=8.2e-07 Score=73.70 Aligned_cols=51 Identities=24% Similarity=0.584 Sum_probs=39.3
Q ss_pred cccccccccccCcCCCCCCceEeCCcCC---cccccccCCCCCCCCCCCCceecccCchhhH
Q 006832 236 HEHIICAKCKLREAFPDNDIVLCDGTCN---CAFHQKCLDPPLDTESRDQGWFCKFCECKME 294 (629)
Q Consensus 236 ~e~~~C~vC~~~g~~~~~~lLlCDG~C~---rafH~~CL~PPL~~~p~dg~W~C~~C~~k~~ 294 (629)
.+..+|. |+... .+.||.||+ |+ .+||+.|++. ...| .+.|||+.|.....
T Consensus 4 ~~~~yC~-C~~~~---~g~MI~CD~-cdC~~~WfH~~Cvgl--~~~p-~~~w~Cp~C~~~~~ 57 (70)
T 1x4i_A 4 GSSGYCI-CNQVS---YGEMVGCDN-QDCPIEWFHYGCVGL--TEAP-KGKWYCPQCTAAMK 57 (70)
T ss_dssp SCCCCST-TSCCC---CSSEECCSC-TTCSCCCEEHHHHTC--SSCC-SSCCCCHHHHHHHH
T ss_pred CCCeEEE-cCCCC---CCCEeEeCC-CCCCccCCccccccc--CcCC-CCCEECCCCCcccc
Confidence 3457885 88764 459999994 75 8999999994 4455 68999999987654
No 116
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=98.08 E-value=1.9e-06 Score=71.37 Aligned_cols=53 Identities=19% Similarity=0.498 Sum_probs=39.8
Q ss_pred cccccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCCCCCceecccCchh
Q 006832 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCECK 292 (629)
Q Consensus 236 ~e~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~k 292 (629)
....+| +|+.... ++..||.|| .|..|||..|++....... ...|+|+.|..+
T Consensus 14 ~~~~~C-~C~~~~~-~g~~mI~Cd-~C~~W~H~~Cvg~~~~~~~-~~~~~C~~C~~~ 66 (72)
T 1wee_A 14 NWKVDC-KCGTKDD-DGERMLACD-GCGVWHHTRCIGINNADAL-PSKFLCFRCIEL 66 (72)
T ss_dssp SSEECC-TTCCCSC-CSSCEEECS-SSCEEEETTTTTCCTTSCC-CSCCCCHHHHHH
T ss_pred CcceEe-eCCCccC-CCCcEEECC-CCCCccCCeeeccCccccC-CCcEECCCccCC
Confidence 445789 6998742 234699999 5999999999997754322 378999999754
No 117
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=98.03 E-value=4.3e-07 Score=86.58 Aligned_cols=55 Identities=20% Similarity=0.507 Sum_probs=41.0
Q ss_pred cccccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCCCCCceecccCchhh
Q 006832 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCECKM 293 (629)
Q Consensus 236 ~e~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~k~ 293 (629)
.+..+| +|+.++. .++.||+|| .|+.|||..|++.+.......+.|+|+.|....
T Consensus 6 ~~~~~C-~C~~~~~-~~~~mi~Cd-~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 6 DTKLYC-ICKTPED-ESKFYIGCD-RCQNWYHGRCVGILQSEAELIDEYVCPQCQSTE 60 (174)
T ss_dssp -CCEET-TTTEECC-TTSCEEECT-TTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHHH
T ss_pred CCCcEe-eCCCCCC-CCCCEeECC-CCCchhChhhcCCchhhccCccCeecCCCcchh
Confidence 356789 9998752 356799999 599999999998654322113789999998754
No 118
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.03 E-value=7.8e-07 Score=65.29 Aligned_cols=20 Identities=25% Similarity=0.358 Sum_probs=15.8
Q ss_pred chhhhccchhccHHHHhhhh
Q 006832 538 EKVNKWFKNARYLALKARKV 557 (629)
Q Consensus 538 ~QVkiWFQNrR~k~~K~~~~ 557 (629)
+||+|||||||++.+|....
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~ 20 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFN 20 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHH
T ss_pred CCceeccHHHHHHHHHHhHH
Confidence 59999999999966655543
No 119
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=97.91 E-value=1.5e-06 Score=78.07 Aligned_cols=53 Identities=23% Similarity=0.488 Sum_probs=40.3
Q ss_pred ccccccccCcC-----CCCCCceEeCCcCCcccccccCCCCCC---CCCCCCceecccCchhh
Q 006832 239 IICAKCKLREA-----FPDNDIVLCDGTCNCAFHQKCLDPPLD---TESRDQGWFCKFCECKM 293 (629)
Q Consensus 239 ~~C~vC~~~g~-----~~~~~lLlCDG~C~rafH~~CL~PPL~---~~p~dg~W~C~~C~~k~ 293 (629)
.+|.+|..++. ...+.||+|++ |++.||+.||.+++. .++ .+.|+|+.|....
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~-C~~~~H~~Cl~~~~~~~~~~~-~~~W~C~~C~~C~ 62 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCAD-CGRSGHPTCLQFTLNMTEAVK-TYKWQCIECKSCI 62 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSS-SCCEECTTTTTCCHHHHHHHH-HTTCCCGGGCCCT
T ss_pred CcCccCCCCccccccCCCCCCCeEeCC-CCCccchhhCCChhhhhhccC-CCccCccccCccC
Confidence 57899987642 23579999995 999999999998753 233 5789999996443
No 120
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=97.91 E-value=6.2e-06 Score=67.71 Aligned_cols=54 Identities=17% Similarity=0.561 Sum_probs=38.3
Q ss_pred cccccccccccCcCCCCCCceEeCC-cCCcccccccCCCCCCCCC---CCCceecccCchh
Q 006832 236 HEHIICAKCKLREAFPDNDIVLCDG-TCNCAFHQKCLDPPLDTES---RDQGWFCKFCECK 292 (629)
Q Consensus 236 ~e~~~C~vC~~~g~~~~~~lLlCDG-~C~rafH~~CL~PPL~~~p---~dg~W~C~~C~~k 292 (629)
.+..+| +|+.... ++.||.||+ .|..|||..|++.+..... ....|||+.|...
T Consensus 8 e~~v~C-~C~~~~~--~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~~ 65 (68)
T 2rsd_A 8 EAKVRC-ICSSTMV--NDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRLS 65 (68)
T ss_dssp SCEECC-TTCCCSC--CSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHHH
T ss_pred CCCEEe-ECCCCcC--CCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccCc
Confidence 445778 7987643 578999993 4999999999985432211 1147999999753
No 121
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.88 E-value=1.8e-06 Score=72.12 Aligned_cols=53 Identities=19% Similarity=0.560 Sum_probs=39.4
Q ss_pred cccccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCC----CCCCceecccCchh
Q 006832 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTE----SRDQGWFCKFCECK 292 (629)
Q Consensus 236 ~e~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~----p~dg~W~C~~C~~k 292 (629)
.+..+| +|+.... ++.||.|| .|..|||..|++...... +....|+|+.|...
T Consensus 14 ~~~~~C-~C~~~~~--~~~MI~Cd-~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 14 PNALYC-ICRQPHN--NRFMICCD-RCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp TTCCCS-TTCCCCC--SSCEEECS-SSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCCCEE-ECCCccC--CCCEEEeC-CCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 345788 7998753 46899999 599999999999654321 01268999999754
No 122
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.86 E-value=5.5e-06 Score=69.79 Aligned_cols=53 Identities=17% Similarity=0.532 Sum_probs=40.6
Q ss_pred cccccccccccCcCCCCCCceEeC--CcCCcccccccCCCCCCCC----CCCCceecccCchh
Q 006832 236 HEHIICAKCKLREAFPDNDIVLCD--GTCNCAFHQKCLDPPLDTE----SRDQGWFCKFCECK 292 (629)
Q Consensus 236 ~e~~~C~vC~~~g~~~~~~lLlCD--G~C~rafH~~CL~PPL~~~----p~dg~W~C~~C~~k 292 (629)
.+..+| +|+... ..+.||.|| . |..|||..|++.+.... .....|||+.|...
T Consensus 14 ~~~~~C-iC~~~~--~~g~MI~CD~~~-C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 14 EIKVRC-VCGNSL--ETDSMIQCEDPR-CHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCCC-SSCCCC--CCSCEEECSSTT-TCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCCEEe-ECCCcC--CCCCEEEECCcc-CCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 456789 799874 357999999 7 99999999999765431 11268999999754
No 123
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=97.84 E-value=2.6e-06 Score=69.73 Aligned_cols=52 Identities=27% Similarity=0.613 Sum_probs=39.0
Q ss_pred cccccccccccCcCCCCCCceEeC-CcCCcccccccCCCCCCC------CCCCCceecccCc
Q 006832 236 HEHIICAKCKLREAFPDNDIVLCD-GTCNCAFHQKCLDPPLDT------ESRDQGWFCKFCE 290 (629)
Q Consensus 236 ~e~~~C~vC~~~g~~~~~~lLlCD-G~C~rafH~~CL~PPL~~------~p~dg~W~C~~C~ 290 (629)
.....|.+|+.... ++..||.|| + |..+||..|++..... .| .+.|+|+.|.
T Consensus 6 ~~~~~C~~C~~p~~-~~~~mI~CD~~-C~~WfH~~Cvglt~~~~~~l~~e~-~~~w~C~~C~ 64 (65)
T 2vpb_A 6 DPVYPCGICTNEVN-DDQDAILCEAS-CQKWFHRICTGMTETAYGLLTAEA-SAVWGCDTCM 64 (65)
T ss_dssp ---CBCTTTCSBCC-TTSCEEEBTTT-TCCEEEHHHHTCCHHHHHHHHHCT-TEEECCHHHH
T ss_pred CCcCcCccCCCccC-CCCCeEecccC-ccccCchhccCCCHHHHHHhhccC-CCcEECcCcc
Confidence 44578999999753 456899999 7 9999999999954321 24 5699999995
No 124
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.82 E-value=3.7e-06 Score=70.91 Aligned_cols=54 Identities=19% Similarity=0.431 Sum_probs=40.1
Q ss_pred cccccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCCCCCceecccCchh
Q 006832 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCECK 292 (629)
Q Consensus 236 ~e~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~k 292 (629)
.+..+| +|+.... .++.||.|| .|..|||..|++...........|+|+.|...
T Consensus 10 ~~~~~C-~C~~~~d-~~~~MIqCd-~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 63 (79)
T 1wep_A 10 LVPVYC-LCRQPYN-VNHFMIECG-LCQDWFHGSCVGIEEENAVDIDIYHCPDCEAV 63 (79)
T ss_dssp CCCCCS-TTSCSCC-SSSCEEEBT-TTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTT
T ss_pred CCccEE-EcCCccC-CCCceEEcC-CCCCcEEeeecCcccccccCCCeEECCCcccc
Confidence 345678 8998752 357899999 59999999999865433211268999999854
No 125
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=97.78 E-value=5.8e-06 Score=73.60 Aligned_cols=54 Identities=30% Similarity=0.694 Sum_probs=41.0
Q ss_pred cccccccccCcCCCCCCceEeC-CcCCcccccccCCCCCC------CCCCCCceecccCchhhH
Q 006832 238 HIICAKCKLREAFPDNDIVLCD-GTCNCAFHQKCLDPPLD------TESRDQGWFCKFCECKME 294 (629)
Q Consensus 238 ~~~C~vC~~~g~~~~~~lLlCD-G~C~rafH~~CL~PPL~------~~p~dg~W~C~~C~~k~~ 294 (629)
...|.+|+.... +++.||.|| + |..|||..|++.... ..| ...|+|+.|.....
T Consensus 3 ~~~C~iC~~p~~-~~~~mi~Cdd~-C~~WfH~~CVglt~~~~~~i~~~~-~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 3 VYPCGACRSEVN-DDQDAILCEAS-CQKWFHRECTGMTESAYGLLTTEA-SAVWACDLCLKTKE 63 (105)
T ss_dssp CCBCTTTCSBCC-TTSCEEECTTT-TCCEEEGGGTTCCHHHHHHHHHCT-TEEECCHHHHHTTT
T ss_pred cCCCCCCCCccC-CCCCEEEecCC-cccccccccCCcCHHHHHhhccCC-CCCEECccccCcCC
Confidence 467999999843 346799997 6 999999999995531 123 57899999987643
No 126
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=97.76 E-value=5.2e-06 Score=69.35 Aligned_cols=54 Identities=22% Similarity=0.508 Sum_probs=39.9
Q ss_pred cccccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCCCCCceecccCchh
Q 006832 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCECK 292 (629)
Q Consensus 236 ~e~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~k 292 (629)
....+| +|+.... .++.||.|| .|..+||..|++......+....|+|+.|...
T Consensus 8 ~~~~yC-iC~~~~~-~~~~MI~Cd-~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 8 TVPVYC-VCRLPYD-VTRFMIECD-ACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp CCCEET-TTTEECC-TTSCEEECT-TTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred CCeeEE-ECCCcCC-CCCCEEEcC-CCCCCEecccccccccccCCCCEEECCCCccc
Confidence 344667 7887642 356899999 69999999999966554332257999999754
No 127
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=97.73 E-value=7.6e-06 Score=70.02 Aligned_cols=53 Identities=23% Similarity=0.703 Sum_probs=42.5
Q ss_pred ccccccccccccCcCCCCCCceEeCCcCCcccccccCCCC------------CCCCCCCCceecccCchh
Q 006832 235 HHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPP------------LDTESRDQGWFCKFCECK 292 (629)
Q Consensus 235 ~~e~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PP------------L~~~p~dg~W~C~~C~~k 292 (629)
..++..|.||.... .+.|+-|. .|.+.||..||.++ +...+ ...|.|+.|..-
T Consensus 12 ~~~D~~C~VC~~~t---~~~l~pCR-vC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T-~~GWSC~~CenL 76 (89)
T 1wil_A 12 VVNDEMCDVCEVWT---AESLFPCR-VCTRVFHDGCLRRMGYIQGDSAAEVTEMAHT-ETGWSCHYCDNI 76 (89)
T ss_dssp CCCSCCCTTTCCCC---SSCCSSCS-SSSSCCCHHHHHHHTSCCCCCCCSCSCCCSS-SSSCCCTTTCCC
T ss_pred CCCCcccCcccccc---ccceeccc-cccccccHhhcccccccccHHHHHHHHccCC-CCCccccccchh
Confidence 34678999999875 47899999 89999999999875 33333 689999999643
No 128
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=97.65 E-value=1.3e-05 Score=62.45 Aligned_cols=46 Identities=20% Similarity=0.543 Sum_probs=37.0
Q ss_pred ccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCCCCCceecccCc
Q 006832 239 IICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCE 290 (629)
Q Consensus 239 ~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~ 290 (629)
.+| +|+.... ++.||.|| .|..+||..|++.+....| ..|+|+.|.
T Consensus 5 ~~C-~C~~~~~--~~~MI~Cd-~C~~W~H~~Cvgi~~~~~~--~~~~C~~C~ 50 (52)
T 3o7a_A 5 VTC-FCMKPFA--GRPMIECN-ECHTWIHLSCAKIRKSNVP--EVFVCQKCR 50 (52)
T ss_dssp BCS-TTCCBCT--TCCEEECT-TTCCEEETTTTTCCGGGCC--SSCCCHHHH
T ss_pred eEE-EeCCcCC--CCCEEEcC-CCCccccccccCCCcccCC--CcEECcCCC
Confidence 456 5887643 56999999 5999999999997766555 689999995
No 129
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=97.58 E-value=9.9e-06 Score=63.17 Aligned_cols=48 Identities=27% Similarity=0.639 Sum_probs=35.5
Q ss_pred cccccccCcCCCCCCceEeC-CcCCcccccccCCCCCCCCCCCCceecccCc
Q 006832 240 ICAKCKLREAFPDNDIVLCD-GTCNCAFHQKCLDPPLDTESRDQGWFCKFCE 290 (629)
Q Consensus 240 ~C~vC~~~g~~~~~~lLlCD-G~C~rafH~~CL~PPL~~~p~dg~W~C~~C~ 290 (629)
-|.+|+.+.. ++..||.|| + |..+||..|++....... ...|+|+.|.
T Consensus 4 ~cc~C~~p~~-~~~~mI~Cd~~-C~~WfH~~Cvgl~~~~~~-~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCK-DKVDWVQCDGG-CDEWFHQVCVGVSPEMAE-NEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCC-TTCCEEECTTT-TCCEEETTTTTCCHHHHH-HSCCCCSCC-
T ss_pred cCCCCcCccC-CCCcEEEeCCC-CCccCcccccCCCccccC-CCCEECCCCC
Confidence 3677887752 356799999 6 999999999996433222 2689999994
No 130
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=97.57 E-value=4.8e-06 Score=74.54 Aligned_cols=55 Identities=22% Similarity=0.471 Sum_probs=39.7
Q ss_pred cccccccccCcC----CCCCCceEeCCcCCcccccccCCCC--CC-CCCCCCceecccCchhhH
Q 006832 238 HIICAKCKLREA----FPDNDIVLCDGTCNCAFHQKCLDPP--LD-TESRDQGWFCKFCECKME 294 (629)
Q Consensus 238 ~~~C~vC~~~g~----~~~~~lLlCDG~C~rafH~~CL~PP--L~-~~p~dg~W~C~~C~~k~~ 294 (629)
..+|.+|...+. ...+.||.|++ |++.||++||++. +. .++ .+.|+|+.|.....
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~-C~~~~H~~Cl~~~~~~~~~~~-~~~W~C~~C~~C~v 66 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCAD-CGNSGHPSCLKFSPELTVRVK-ALRWQCIECKTCSS 66 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTT-TCCEECHHHHTCCHHHHHHHH-TSCCCCTTTCCBTT
T ss_pred CccccccCCchhhCcCCCchhceEhhh-cCCCCCCchhcCCHHHHHHhh-ccccccccCCcccc
Confidence 467888876531 13569999995 9999999999752 22 223 57999999975443
No 131
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=97.24 E-value=9.4e-05 Score=81.93 Aligned_cols=41 Identities=22% Similarity=0.387 Sum_probs=31.6
Q ss_pred CCCCceEeCCcCCcccccccCCCCCCCCCCCCceecccCchh
Q 006832 251 PDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCECK 292 (629)
Q Consensus 251 ~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~k 292 (629)
++..||+|| .|..|||..|++...........|+||.|...
T Consensus 54 ~~~~mI~CD-~C~~WfH~~CVgi~~~~a~~~~~y~Cp~C~~~ 94 (528)
T 3pur_A 54 NDFQWIGCD-SCQTWYHFLCSGLEQFEYYLYEKFFCPKCVPH 94 (528)
T ss_dssp STTSEEECT-TTCCEEEGGGTTCCGGGTTTEEECCCTTTHHH
T ss_pred cCCCEEECC-CCCcCCCCcCCCCChhHhcCCCeEECcCCcCC
Confidence 346899999 59999999999965433221368999999864
No 132
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=97.15 E-value=0.00012 Score=71.07 Aligned_cols=54 Identities=17% Similarity=0.416 Sum_probs=38.3
Q ss_pred ccccccccCcCCC--CCCceEeCCcCCcccccccCCCCCC------CCCCCCceecccCchhh
Q 006832 239 IICAKCKLREAFP--DNDIVLCDGTCNCAFHQKCLDPPLD------TESRDQGWFCKFCECKM 293 (629)
Q Consensus 239 ~~C~vC~~~g~~~--~~~lLlCDG~C~rafH~~CL~PPL~------~~p~dg~W~C~~C~~k~ 293 (629)
.+|.+|+...... +..||.|| .|..|||..|++..-. ..|....|+|+.|....
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd-~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCG-KCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECT-TTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CcCCCCcCccCCcccCCCeEECC-CCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 4799999876422 12499999 5999999999986421 11211379999998753
No 133
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=97.12 E-value=5.4e-05 Score=83.53 Aligned_cols=55 Identities=18% Similarity=0.426 Sum_probs=40.2
Q ss_pred cccccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCCCCCceecccCchhh
Q 006832 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCECKM 293 (629)
Q Consensus 236 ~e~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~k~ 293 (629)
.+..+| +|+.... .++.||.|| .|..|||..|++..-........|+|+.|....
T Consensus 35 ~~~~yC-~C~~~~d-~~~~MIqCd-~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 89 (488)
T 3kv5_D 35 PPPVYC-VCRQPYD-VNRFMIECD-ICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLH 89 (488)
T ss_dssp CCCEET-TTTEECC-TTSCEEEBT-TTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHH
T ss_pred CCCeEE-eCCCcCC-CCCCeEEcc-CCCCceeeeecCcCcccccCCCEEECCCCcCCc
Confidence 445677 8988642 357899999 599999999998654332212579999998653
No 134
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=96.20 E-value=0.00037 Score=76.11 Aligned_cols=52 Identities=23% Similarity=0.540 Sum_probs=37.6
Q ss_pred ccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCCCCCceecccCchhh
Q 006832 239 IICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCECKM 293 (629)
Q Consensus 239 ~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~k~ 293 (629)
.+| +|+.... .++.||.|| .|..+||..|++......+....|+|+.|....
T Consensus 6 ~yC-iC~~~~d-~~~~MIqCD-~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~ 57 (447)
T 3kv4_A 6 VYC-LCRLPYD-VTRFMIECD-MCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLH 57 (447)
T ss_dssp EET-TTTEECC-TTSCEEECT-TTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHH
T ss_pred eEE-eCCCcCC-CCCCeEEcC-CCCcccccccCCcCcccccCCCEEECCCCcccc
Confidence 445 7887642 357899999 599999999998553332212689999997653
No 135
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=95.81 E-value=0.0035 Score=55.84 Aligned_cols=40 Identities=23% Similarity=0.472 Sum_probs=30.3
Q ss_pred CCCceEeCCcCCcccccccCCCCCCCCC---CCCceecccCchh
Q 006832 252 DNDIVLCDGTCNCAFHQKCLDPPLDTES---RDQGWFCKFCECK 292 (629)
Q Consensus 252 ~~~lLlCDG~C~rafH~~CL~PPL~~~p---~dg~W~C~~C~~k 292 (629)
+..||.|+ .|..+||..|++++....+ ....|+|+.|...
T Consensus 72 ~~~m~~C~-~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~~ 114 (117)
T 4bbq_A 72 EKKLMECC-ICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQE 114 (117)
T ss_dssp GGSCEEET-TTCCEECGGGCCSCCCCEECSSSSSEEECTTTC--
T ss_pred CcceEEee-ecCCeEECCCCCCCccccccccCCCCeECCCCcCC
Confidence 35699999 6999999999998865433 1246999999754
No 136
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=94.93 E-value=0.0049 Score=54.83 Aligned_cols=38 Identities=18% Similarity=0.486 Sum_probs=28.5
Q ss_pred CceEeCCcCCcccccccCCCCC------CCCCCCCceecccCchh
Q 006832 254 DIVLCDGTCNCAFHQKCLDPPL------DTESRDQGWFCKFCECK 292 (629)
Q Consensus 254 ~lLlCDG~C~rafH~~CL~PPL------~~~p~dg~W~C~~C~~k 292 (629)
.||.|| .|..|||..|....- ...|....|.|+.|...
T Consensus 1 ~mi~c~-~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~ 44 (140)
T 2ku7_A 1 SMMQCG-KCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 44 (140)
T ss_dssp CCCCCS-CCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTT
T ss_pred Cccccc-cCCCccCCcccccCHHHHHHHhhccccceeeCcccccc
Confidence 389999 599999999998542 22232357999999754
No 137
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=94.36 E-value=0.035 Score=49.56 Aligned_cols=47 Identities=19% Similarity=0.430 Sum_probs=35.6
Q ss_pred CCCcccccccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCCCCCceec
Q 006832 231 DGSVHHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFC 286 (629)
Q Consensus 231 dg~~~~e~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C 286 (629)
..|.+..+ .|.+|+... .+.|. .|+.+||..|+.+.|...+ ...|+|
T Consensus 52 g~W~Cp~c-~C~~C~k~~------~~~C~-~Cp~sfC~~c~~g~l~~~~-~~~~~c 98 (107)
T 4gne_A 52 GKWECPWH-QCDECSSAA------VSFCE-FCPHSFCKDHEKGALVPSA-LEGRLC 98 (107)
T ss_dssp SCCCCGGG-BCTTTCSBC------CEECS-SSSCEECTTTCTTSCEECT-TTTCEE
T ss_pred CCEECCCC-CCCcCCCCC------CcCcC-CCCcchhhhccCCcceecC-CCCcee
Confidence 33544433 366676652 38899 7999999999999999888 689998
No 138
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.53 E-value=0.047 Score=45.27 Aligned_cols=45 Identities=22% Similarity=0.417 Sum_probs=40.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchh
Q 006832 503 MPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNA 547 (629)
Q Consensus 503 ft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNr 547 (629)
.++.-.+.|+++|..+..+....-..|..+.+|+..||+-||--+
T Consensus 13 ~~p~~~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~k 57 (70)
T 2ys9_A 13 PPPPDIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDSR 57 (70)
T ss_dssp CCCCCCHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHhc
Confidence 355556799999999999999999999999999999999999654
No 139
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=87.60 E-value=0.094 Score=49.89 Aligned_cols=52 Identities=21% Similarity=0.626 Sum_probs=39.8
Q ss_pred ccccccccccCcCCCCCCceEeCC-cCCcccccccCCCCCCCCC-----CCCceecccCchhh
Q 006832 237 EHIICAKCKLREAFPDNDIVLCDG-TCNCAFHQKCLDPPLDTES-----RDQGWFCKFCECKM 293 (629)
Q Consensus 237 e~~~C~vC~~~g~~~~~~lLlCDG-~C~rafH~~CL~PPL~~~p-----~dg~W~C~~C~~k~ 293 (629)
.+.+|.+|+.++ .||+||. .|.++|=..|+.--+.... ....|.|--|...+
T Consensus 78 ~~~yC~wC~~Gg-----~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~~ 135 (159)
T 3a1b_A 78 YQSYCTICCGGR-----EVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHKG 135 (159)
T ss_dssp SBSSCTTTSCCS-----EEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSSC
T ss_pred CcceeeEecCCC-----eEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCCcc
Confidence 367899999874 8999992 2999999999865444422 35789999998764
No 140
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=87.09 E-value=0.4 Score=46.36 Aligned_cols=50 Identities=10% Similarity=0.174 Sum_probs=31.6
Q ss_pred ccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCC---CCCceecccCch
Q 006832 239 IICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTES---RDQGWFCKFCEC 291 (629)
Q Consensus 239 ~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p---~dg~W~C~~C~~ 291 (629)
.+|. |+..+. -.-.||.|+ .|.++||..|+..+....- .--...|..|..
T Consensus 6 ~yCY-CG~~~~-~~~~mLqC~-~C~qWFH~~Cl~~~~~~~lp~~~fY~F~C~~C~~ 58 (177)
T 3rsn_A 6 GSVD-EENGRQ-LGEVELQCG-ICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHH 58 (177)
T ss_dssp ------CTTCC-TTSCEEECT-TTCCEEEGGGGTCCCTTCCTTCCSEEEECTTTST
T ss_pred eEEE-cCCCCC-CCceeEeec-cccceecHHHhcccccCccccceeEEEEccccCC
Confidence 3453 666542 356899999 5999999999986543322 123567999965
No 141
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=84.74 E-value=0.16 Score=54.59 Aligned_cols=51 Identities=20% Similarity=0.610 Sum_probs=40.0
Q ss_pred ccccccccccCcCCCCCCceEeC--CcCCcccccccCCCCCCCCC-----CCCceecccCchhh
Q 006832 237 EHIICAKCKLREAFPDNDIVLCD--GTCNCAFHQKCLDPPLDTES-----RDQGWFCKFCECKM 293 (629)
Q Consensus 237 e~~~C~vC~~~g~~~~~~lLlCD--G~C~rafH~~CL~PPL~~~p-----~dg~W~C~~C~~k~ 293 (629)
.+.+|..|+.++ .+|+|| . |.++|-..|+.--+...- ....|.|--|...+
T Consensus 92 ~~~yCr~C~~Gg-----~l~~Cdn~~-C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~p 149 (386)
T 2pv0_B 92 YQSYCSICCSGE-----TLLICGNPD-CTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPSS 149 (386)
T ss_dssp SBCSCTTTCCCS-----SCEECCSTT-CCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSCC
T ss_pred CcccceEcCCCC-----eEEEeCCCC-CCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCcc
Confidence 467899999875 799999 6 999999999975553322 23689999998765
No 142
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=79.79 E-value=2 Score=37.73 Aligned_cols=48 Identities=17% Similarity=0.257 Sum_probs=39.2
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhcc
Q 006832 499 SFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARY 549 (629)
Q Consensus 499 ~r~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~ 549 (629)
++.+||.++...+-..+.+++++. ..+||+.+|++...|..|..+++.
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~stl~~~~~~~~~ 51 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTLSTILKNKRA 51 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHHHHHHHTHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHHHHHHHhchhh
Confidence 456789999988887776776654 346999999999999999988776
No 143
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=76.94 E-value=1.7 Score=33.56 Aligned_cols=47 Identities=6% Similarity=0.263 Sum_probs=33.4
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhc
Q 006832 501 HRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNAR 548 (629)
Q Consensus 501 ~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR 548 (629)
.+||++....+...+... ++......++|.++|+++.+|..|....+
T Consensus 4 ~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl~~W~~~~~ 50 (59)
T 2glo_A 4 RIFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQIQKWLQCES 50 (59)
T ss_dssp CCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHHHHHHTTHH
T ss_pred CcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 468999877665555433 33222367999999999999999976443
No 144
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.45 E-value=0.89 Score=38.01 Aligned_cols=52 Identities=21% Similarity=0.612 Sum_probs=32.8
Q ss_pred cccccccccccCcCCCCCCceE-eCCcC---CcccccccCCCCCCCCCCCCceecccCchhh
Q 006832 236 HEHIICAKCKLREAFPDNDIVL-CDGTC---NCAFHQKCLDPPLDTESRDQGWFCKFCECKM 293 (629)
Q Consensus 236 ~e~~~C~vC~~~g~~~~~~lLl-CDG~C---~rafH~~CL~PPL~~~p~dg~W~C~~C~~k~ 293 (629)
.+...|.+|..... .++.+|+ |. | ...||..||..=|... +...||.|....
T Consensus 13 ~~~~~C~IC~~~~~-~~~~l~~pC~--C~Gs~h~fH~~Cl~~Wl~~~---~~~~CplCr~~~ 68 (80)
T 2d8s_A 13 SSQDICRICHCEGD-DESPLITPCH--CTGSLHFVHQACLQQWIKSS---DTRCCELCKYEF 68 (80)
T ss_dssp TTSCCCSSSCCCCC-SSSCEECSSS--CCSSSCCEETTHHHHHHHHH---CCSBCSSSCCBC
T ss_pred CCCCCCeEcCcccc-CCCeeEeccc--cCCcCCeeCHHHHHHHHhhC---CCCCCCCCCCee
Confidence 34578999987542 2344543 32 3 3899999998543321 235899998653
No 145
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=76.34 E-value=2.8 Score=34.87 Aligned_cols=45 Identities=16% Similarity=0.375 Sum_probs=33.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccch
Q 006832 497 RRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKN 546 (629)
Q Consensus 497 kR~r~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQN 546 (629)
++.+.+|+.++....-..+.. .+ ...+||+.+|++...|..|...
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~~-g~----s~~~iA~~~gIs~sTl~rW~k~ 61 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIHD-GE----SKASVARDIGVPESTLRGWCKN 61 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHHH-TC----CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHC-CC----CHHHHHHHHCcCHHHHHHHHHH
Confidence 345567899987655556643 33 3568999999999999999754
No 146
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=76.22 E-value=0.62 Score=41.10 Aligned_cols=37 Identities=24% Similarity=0.523 Sum_probs=29.4
Q ss_pred cccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCCCCCceecccCchh
Q 006832 238 HIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCECK 292 (629)
Q Consensus 238 ~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~k 292 (629)
..+|.+|+..+ |+ .|...||+.|+++| .|.|..|...
T Consensus 7 C~~C~~C~~~~---------C~-~C~~c~~~~~~~~~--------~~~~~~c~~~ 43 (117)
T 4bbq_A 7 CRKCKACVQGE---------CG-VCHYCRDMKKFGGP--------GRMKQSCVLR 43 (117)
T ss_dssp CSCSHHHHSCC---------CS-CSHHHHHSGGGTSC--------CCSCCCCGGG
T ss_pred CCcCcCcCCcC---------CC-CCCCCcCCcccCCC--------Cccccchhhe
Confidence 56788888652 99 69999999999875 5888888654
No 147
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=72.93 E-value=1.4 Score=32.93 Aligned_cols=48 Identities=23% Similarity=0.519 Sum_probs=32.4
Q ss_pred cccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCCCCCceecccCchh
Q 006832 238 HIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCECK 292 (629)
Q Consensus 238 ~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~k 292 (629)
...|.+|...-. .+...+..- .|...||..|+..-+.. ...||.|...
T Consensus 5 ~~~C~IC~~~~~-~~~~~~~~~-~C~H~f~~~Ci~~w~~~-----~~~CP~Cr~~ 52 (55)
T 1iym_A 5 GVECAVCLAELE-DGEEARFLP-RCGHGFHAECVDMWLGS-----HSTCPLCRLT 52 (55)
T ss_dssp SCCCTTTCCCCC-TTSCCEECS-SSCCEECTTHHHHTTTT-----CCSCSSSCCC
T ss_pred CCcCccCCcccc-CCCceEECC-CCCCcccHHHHHHHHHc-----CCcCcCCCCE
Confidence 467999987642 223344444 39999999999865543 3479999754
No 148
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=72.38 E-value=3.6 Score=28.90 Aligned_cols=42 Identities=10% Similarity=0.156 Sum_probs=31.2
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhc
Q 006832 502 RMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNAR 548 (629)
Q Consensus 502 rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR 548 (629)
.+++.+...+...+.. .+ ...+||+.||++...|..|....+
T Consensus 5 ~l~~~~~~~i~~~~~~-g~----s~~~IA~~lgis~~Tv~~~~~~~~ 46 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLL-NV----SLHEMSRKISRSRHCIRVYLKDPV 46 (51)
T ss_dssp CCCHHHHHHHHHHHHT-TC----CHHHHHHHHTCCHHHHHHHHHCST
T ss_pred CCCHHHHHHHHHHHHc-CC----CHHHHHHHHCcCHHHHHHHHhhHH
Confidence 4688887666666643 33 366899999999999999986543
No 149
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=69.78 E-value=2 Score=45.73 Aligned_cols=57 Identities=26% Similarity=0.525 Sum_probs=33.2
Q ss_pred cccccccccccCcCCCCCC--ceEeCC-cCCcccccccCCCCCCCCC------CCCceecccCchhh
Q 006832 236 HEHIICAKCKLREAFPDND--IVLCDG-TCNCAFHQKCLDPPLDTES------RDQGWFCKFCECKM 293 (629)
Q Consensus 236 ~e~~~C~vC~~~g~~~~~~--lLlCDG-~C~rafH~~CL~PPL~~~p------~dg~W~C~~C~~k~ 293 (629)
.....|.+|-..-. +.+. ...|+. .|...||..||..=+...+ .---=-||.|..+.
T Consensus 306 e~~~ECaICys~~l-~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pI 371 (381)
T 3k1l_B 306 NEELRCNICFAYRL-DGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKL 371 (381)
T ss_dssp CSCCSCSSSCCSSC-TTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEE
T ss_pred cCCccCcccceeec-CCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcC
Confidence 44567999987532 1122 346873 5999999999963211110 00012399998754
No 150
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=69.30 E-value=0.86 Score=38.31 Aligned_cols=48 Identities=23% Similarity=0.553 Sum_probs=31.9
Q ss_pred ccccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCCCCCceecccCchh
Q 006832 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCECK 292 (629)
Q Consensus 237 e~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~k 292 (629)
....|.+|...-. .+..+..- .|...||..|+..-+... -.||.|...
T Consensus 39 ~~~~C~IC~~~~~--~~~~~~~l-~C~H~Fh~~Ci~~wl~~~-----~~CP~Cr~~ 86 (91)
T 2l0b_A 39 QEMCCPICCSEYV--KGDVATEL-PCHHYFHKPCVSIWLQKS-----GTCPVCRCM 86 (91)
T ss_dssp SCSEETTTTEECC--TTCEEEEE-TTTEEEEHHHHHHHHTTT-----CBCTTTCCB
T ss_pred CCCCCcccChhhc--CCCcEEec-CCCChHHHHHHHHHHHcC-----CcCcCcCcc
Confidence 4567999986532 22334334 499999999998644332 379999754
No 151
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=65.19 E-value=3.6 Score=29.51 Aligned_cols=43 Identities=7% Similarity=0.254 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhcc
Q 006832 502 RMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARY 549 (629)
Q Consensus 502 rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~ 549 (629)
.|++++...+...+... ....+||+.||++...|..|+.....
T Consensus 5 ~~~~~~~~~i~~l~~~g-----~s~~~ia~~lgvs~~Tv~r~l~~~~~ 47 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG-----HPRQQLAIIFGIGVSTLYRYFPASSI 47 (52)
T ss_dssp SSCTTHHHHHHHHHHTT-----CCHHHHHHTTSCCHHHHHHHSCTTC-
T ss_pred CCCHHHHHHHHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHHccc
Confidence 35777766666666543 24578999999999999999976554
No 152
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.43 E-value=1.9 Score=35.47 Aligned_cols=50 Identities=24% Similarity=0.584 Sum_probs=31.1
Q ss_pred ccccccccccCcCC----------CCCCceEeCCcCCcccccccCCCCCCCCCCCCceecccCchh
Q 006832 237 EHIICAKCKLREAF----------PDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCECK 292 (629)
Q Consensus 237 e~~~C~vC~~~g~~----------~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~k 292 (629)
++..|.+|...-.. .+..++.-- .|...||..|+..=|.... .||.|...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~-~C~H~FH~~Ci~~Wl~~~~-----~CP~CR~~ 73 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWG-ECNHSFHNCCMSLWVKQNN-----RCPLCQQD 73 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEE-TTSCEEEHHHHHHHTTTCC-----BCTTTCCB
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeC-CCCCccChHHHHHHHHhCC-----CCCCcCCC
Confidence 45567777765321 112232222 3999999999987555432 79999854
No 153
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.77 E-value=2 Score=35.63 Aligned_cols=46 Identities=22% Similarity=0.472 Sum_probs=33.2
Q ss_pred cccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCCCCCceecccCch
Q 006832 238 HIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCEC 291 (629)
Q Consensus 238 ~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~ 291 (629)
...|.+|..--. .-+.|- .|...||..|+.-=|.... .=.||.|..
T Consensus 15 i~~C~IC~~~i~----~g~~C~-~C~h~fH~~Ci~kWl~~~~---~~~CP~Cr~ 60 (74)
T 2ct0_A 15 VKICNICHSLLI----QGQSCE-TCGIRMHLPCVAKYFQSNA---EPRCPHCND 60 (74)
T ss_dssp SCBCSSSCCBCS----SSEECS-SSCCEECHHHHHHHSTTCS---SCCCTTTCS
T ss_pred CCcCcchhhHcc----cCCccC-CCCchhhHHHHHHHHHhcC---CCCCCCCcC
Confidence 467999998643 335787 6999999999986555432 236999974
No 154
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=61.61 E-value=1.8 Score=38.84 Aligned_cols=27 Identities=33% Similarity=0.626 Sum_probs=0.0
Q ss_pred cCCcccccccCCCCCCCCCCCCceecccCchh
Q 006832 261 TCNCAFHQKCLDPPLDTESRDQGWFCKFCECK 292 (629)
Q Consensus 261 ~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~k 292 (629)
.|...||..|+.+=|... -.||.|...
T Consensus 83 ~C~H~FH~~CI~~Wl~~~-----~~CP~Cr~~ 109 (117)
T 4a0k_B 83 VCNHAFHFHCISRWLKTR-----QVCPLDNRE 109 (117)
T ss_dssp --------------------------------
T ss_pred CcCceEcHHHHHHHHHcC-----CcCCCCCCe
Confidence 499999999998765543 269999765
No 155
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=60.49 E-value=4 Score=32.67 Aligned_cols=50 Identities=28% Similarity=0.482 Sum_probs=32.4
Q ss_pred cccccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCCCCCceecccCchhh
Q 006832 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCECKM 293 (629)
Q Consensus 236 ~e~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~k~ 293 (629)
.....|.+|...-. ....+.-- .|...||..|+..-+.. ...||.|....
T Consensus 13 ~~~~~C~IC~~~~~--~~~~~~~~-~C~H~fc~~Ci~~~~~~-----~~~CP~Cr~~~ 62 (78)
T 2ect_A 13 GSGLECPVCKEDYA--LGESVRQL-PCNHLFHDSCIVPWLEQ-----HDSCPVCRKSL 62 (78)
T ss_dssp SSSCCCTTTTSCCC--TTSCEEEC-TTSCEEETTTTHHHHTT-----TCSCTTTCCCC
T ss_pred CCCCCCeeCCcccc--CCCCEEEe-CCCCeecHHHHHHHHHc-----CCcCcCcCCcc
Confidence 34567999987532 22333333 39999999999754432 24799998653
No 156
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=60.12 E-value=1.4 Score=34.48 Aligned_cols=49 Identities=27% Similarity=0.408 Sum_probs=31.7
Q ss_pred cccccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCCCCCceecccCchh
Q 006832 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCECK 292 (629)
Q Consensus 236 ~e~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~k 292 (629)
.....|.+|...-. .+..+..- .|...||..|+..-+... ..||.|...
T Consensus 12 ~~~~~C~IC~~~~~--~~~~~~~~-~C~H~fc~~Ci~~~~~~~-----~~CP~Cr~~ 60 (69)
T 2kiz_A 12 DTEEKCTICLSILE--EGEDVRRL-PCMHLFHQVCVDQWLITN-----KKCPICRVD 60 (69)
T ss_dssp TCCCSBTTTTBCCC--SSSCEEEC-TTSCEEEHHHHHHHHHHC-----SBCTTTCSB
T ss_pred CCCCCCeeCCcccc--CCCcEEEe-CCCCHHHHHHHHHHHHcC-----CCCcCcCcc
Confidence 34567999976532 22334444 499999999997543322 359999755
No 157
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=59.28 E-value=12 Score=31.65 Aligned_cols=24 Identities=17% Similarity=0.371 Sum_probs=16.8
Q ss_pred ccCCCCCCCCCCCCceecccCchhhH
Q 006832 269 KCLDPPLDTESRDQGWFCKFCECKME 294 (629)
Q Consensus 269 ~CL~PPL~~~p~dg~W~C~~C~~k~~ 294 (629)
.+-+.+....| .+|.||.|-....
T Consensus 48 I~pGT~fedlP--ddW~CPvCga~K~ 71 (81)
T 2kn9_A 48 IAAGTRWDDIP--DDWSCPDCGAAKS 71 (81)
T ss_dssp BCTTCCTTTSC--TTCCCTTTCCCGG
T ss_pred cCCCCChhHCC--CCCcCCCCCCCHH
Confidence 34445566676 6899999987543
No 158
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=58.27 E-value=7 Score=32.40 Aligned_cols=48 Identities=6% Similarity=0.120 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHh
Q 006832 502 RMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKA 554 (629)
Q Consensus 502 rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~K~ 554 (629)
.+++.+.+.|.-+|-+. -.-.+||+.||++...|+.+....|.+.++.
T Consensus 37 ~L~~~~r~vl~l~~~~g-----~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 84 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRG-----WSTAQIATDLGIAEGTVKSRLHYAVRALRLT 84 (92)
T ss_dssp TSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 47899999888766433 2457899999999999999998888855443
No 159
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=57.65 E-value=5.9 Score=34.20 Aligned_cols=76 Identities=14% Similarity=0.329 Sum_probs=46.2
Q ss_pred cccccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCCCCCceecccCchhhHHH--HhhhccCCccccccchh
Q 006832 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCECKMEII--ESMNAHIGTSFSVNSNW 313 (629)
Q Consensus 236 ~e~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~k~~~l--~~~n~~~gtsf~lp~~~ 313 (629)
.++..|.+|...-. +.+++ . |...||..|+..-+.. +...||.|....... ..+.........|-..+
T Consensus 13 ~~~~~C~iC~~~~~---~p~~~-~--CgH~fC~~Ci~~~~~~----~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i 82 (115)
T 3l11_A 13 LSECQCGICMEILV---EPVTL-P--CNHTLCKPCFQSTVEK----ASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTII 82 (115)
T ss_dssp HHHHBCTTTCSBCS---SCEEC-T--TSCEECHHHHCCCCCT----TTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHH
T ss_pred CCCCCCccCCcccC---ceeEc-C--CCCHHhHHHHHHHHhH----CcCCCCCCCcccCccccccccccchhhHHHHHHH
Confidence 44678999997642 23333 3 9999999999876543 356899998875432 11222223333455556
Q ss_pred hhhhcccc
Q 006832 314 QDIFKEEA 321 (629)
Q Consensus 314 ~d~F~eva 321 (629)
..+|+...
T Consensus 83 ~~~~p~~~ 90 (115)
T 3l11_A 83 QKHYPREC 90 (115)
T ss_dssp HHHSHHHH
T ss_pred HHHCCHHH
Confidence 66665543
No 160
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=56.15 E-value=2.5 Score=37.07 Aligned_cols=27 Identities=33% Similarity=0.626 Sum_probs=20.6
Q ss_pred cCCcccccccCCCCCCCCCCCCceecccCchh
Q 006832 261 TCNCAFHQKCLDPPLDTESRDQGWFCKFCECK 292 (629)
Q Consensus 261 ~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~k 292 (629)
.|...||..|+.+=|... -.||.|...
T Consensus 72 ~C~H~FH~~Ci~~Wl~~~-----~~CP~Cr~~ 98 (106)
T 3dpl_R 72 VCNHAFHFHCISRWLKTR-----QVCPLDNRE 98 (106)
T ss_dssp TTSCEEEHHHHHHHHTTC-----SBCSSSCSB
T ss_pred ccCcEECHHHHHHHHHcC-----CcCcCCCCc
Confidence 499999999998654432 369999864
No 161
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=56.04 E-value=9.4 Score=31.81 Aligned_cols=45 Identities=4% Similarity=0.191 Sum_probs=32.5
Q ss_pred CCCCHHHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCcchhhhccchhcc
Q 006832 501 HRMPPNAVEKLRQVFAEN-ELPSRIVKENLSKELSLEPEKVNKWFKNARY 549 (629)
Q Consensus 501 ~rft~~Q~~~Le~~F~~~-~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~ 549 (629)
.+||+++....-..+... .+ ...+||+.+|+++.+|..|....+.
T Consensus 4 ~~ys~e~k~~~v~~~~~~~g~----s~~~ia~~~gIs~~tl~rW~~~~~~ 49 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENSDGA----SLQQIANDLGINRVTLKNWIIKYGS 49 (97)
T ss_dssp CCCCHHHHHHHHHHHTTGGGS----CHHHHHHHHTSCHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHHcCCC----hHHHHHHHHCcCHHHHHHHHHHHhh
Confidence 468999877555555332 22 3679999999999999999765443
No 162
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=55.32 E-value=2.9 Score=36.03 Aligned_cols=54 Identities=22% Similarity=0.336 Sum_probs=31.0
Q ss_pred cccccccccCcCCC-------------CCCceEeCCcCCcccccccCCCCCCCCCCCCceecccCchh
Q 006832 238 HIICAKCKLREAFP-------------DNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCECK 292 (629)
Q Consensus 238 ~~~C~vC~~~g~~~-------------~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~k 292 (629)
+..|.+|...-... +...+..- .|...||..|+..-+........-.||.|...
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~ 91 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLT-KCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTI 91 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEES-SSCCEECHHHHHHHHHHTCCSSCCBCTTTCCB
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecC-CCCCcccHHHHHHHHHcccCCCCCcCCCCCCc
Confidence 35799997653111 11233344 49999999999854421100123579999854
No 163
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.24 E-value=1.1 Score=35.90 Aligned_cols=49 Identities=27% Similarity=0.614 Sum_probs=32.5
Q ss_pred cccccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCCCCCceecccCchh
Q 006832 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCECK 292 (629)
Q Consensus 236 ~e~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~k 292 (629)
.+...|.+|...-. ....+..- .|...||..|+..-+.. ...||.|...
T Consensus 21 ~~~~~C~IC~~~~~--~~~~~~~l-~C~H~fh~~Ci~~w~~~-----~~~CP~Cr~~ 69 (75)
T 1x4j_A 21 SEQTLCVVCMCDFE--SRQLLRVL-PCNHEFHAKCVDKWLKA-----NRTCPICRAD 69 (75)
T ss_dssp SSCCEETTTTEECC--BTCEEEEE-TTTEEEETTHHHHHHHH-----CSSCTTTCCC
T ss_pred CCCCCCeECCcccC--CCCeEEEE-CCCCHhHHHHHHHHHHc-----CCcCcCcCCc
Confidence 34578999997532 23444444 49999999999754322 2369999754
No 164
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.89 E-value=7.4 Score=30.66 Aligned_cols=48 Identities=21% Similarity=0.326 Sum_probs=33.1
Q ss_pred cccccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCCCCCceecccCchhhH
Q 006832 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCECKME 294 (629)
Q Consensus 236 ~e~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~k~~ 294 (629)
.+...|.+|...-. +.+... |...||..|+..-+.. ...||.|.....
T Consensus 13 ~~~~~C~IC~~~~~----~~~~~~--CgH~fC~~Ci~~~~~~-----~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 13 LTVPECAICLQTCV----HPVSLP--CKHVFCYLCVKGASWL-----GKRCALCRQEIP 60 (71)
T ss_dssp SSCCBCSSSSSBCS----SEEEET--TTEEEEHHHHHHCTTC-----SSBCSSSCCBCC
T ss_pred CCCCCCccCCcccC----CCEEcc--CCCHHHHHHHHHHHHC-----CCcCcCcCchhC
Confidence 34567999987642 334443 9999999999754433 257999987654
No 165
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=54.57 E-value=5.8 Score=30.55 Aligned_cols=45 Identities=9% Similarity=-0.015 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHH
Q 006832 502 RMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLA 551 (629)
Q Consensus 502 rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~ 551 (629)
.+++.+...|...|-.. ..-.++|+.||+++..|..|....|.+.
T Consensus 15 ~L~~~~r~il~l~~~~g-----~s~~eIA~~lgis~~tv~~~~~ra~~~l 59 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG-----LSYADAAAVCGCPVGTIRSRVARARDAL 59 (70)
T ss_dssp SSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 47899999998876433 2346899999999999999988877743
No 166
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=54.17 E-value=12 Score=31.78 Aligned_cols=46 Identities=15% Similarity=0.403 Sum_probs=33.1
Q ss_pred CCCCHHHHHHHHHHH-HhC-CCCCH-HHHHHHHHHhCCCcchhhhccch
Q 006832 501 HRMPPNAVEKLRQVF-AEN-ELPSR-IVKENLSKELSLEPEKVNKWFKN 546 (629)
Q Consensus 501 ~rft~~Q~~~Le~~F-~~~-~yPs~-~~re~LA~~lgLt~~QVkiWFQN 546 (629)
.+||+++....-..+ ... .|++. ....++|..+|+++.+|..|..-
T Consensus 5 ~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~~ 53 (108)
T 2rn7_A 5 TRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQ 53 (108)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHHH
Confidence 468999876444444 432 35553 46778999999999999999754
No 167
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=53.28 E-value=13 Score=32.01 Aligned_cols=44 Identities=20% Similarity=0.204 Sum_probs=35.8
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhcc
Q 006832 500 FHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARY 549 (629)
Q Consensus 500 r~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~ 549 (629)
...||+.+.+.|.-++..-.| .+||+.||+++..|+.+..+-+.
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~s~------~EIA~~L~iS~~TV~~~l~ri~~ 75 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGFLV------TEIAKKLNRSIKTISSQKKSAMM 75 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTCCH------HHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcCCCH------HHHHHHHCcCHHHHHHHHHHHHH
Confidence 456899999999886643333 89999999999999998887666
No 168
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=51.71 E-value=2.1 Score=31.78 Aligned_cols=49 Identities=18% Similarity=0.442 Sum_probs=31.8
Q ss_pred ccccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCCCCCceecccCchh
Q 006832 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCECK 292 (629)
Q Consensus 237 e~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~k 292 (629)
....|.+|...-. ..+..+..- .|...||..|+..-+.. ...||.|...
T Consensus 4 ~~~~C~IC~~~~~-~~~~~~~~~-~CgH~fc~~Ci~~~~~~-----~~~CP~Cr~~ 52 (55)
T 2ecm_A 4 GSSGCPICLEDIH-TSRVVAHVL-PCGHLLHRTCYEEMLKE-----GYRCPLCSGP 52 (55)
T ss_dssp CCCSCTTTCCCCC-TTTSCEEEC-TTSCEEETTHHHHHHHH-----TCCCTTSCCS
T ss_pred CCCcCcccChhhc-CCCcCeEec-CCCCcccHHHHHHHHHc-----CCcCCCCCCc
Confidence 3467999987532 123445555 49999999998743322 1469998754
No 169
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.53 E-value=2.7 Score=33.38 Aligned_cols=49 Identities=33% Similarity=0.742 Sum_probs=32.2
Q ss_pred ccccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCCCCCceecccCchhh
Q 006832 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCECKM 293 (629)
Q Consensus 237 e~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~k~ 293 (629)
....|.+|...-. .+..++... |...||..|+..-+... ..||.|....
T Consensus 14 ~~~~C~IC~~~~~-~~~~~~~~~--C~H~f~~~Ci~~~~~~~-----~~CP~Cr~~~ 62 (74)
T 2ep4_A 14 LHELCAVCLEDFK-PRDELGICP--CKHAFHRKCLIKWLEVR-----KVCPLCNMPV 62 (74)
T ss_dssp CSCBCSSSCCBCC-SSSCEEEET--TTEEEEHHHHHHHHHHC-----SBCTTTCCBC
T ss_pred CCCCCcCCCcccC-CCCcEEEcC--CCCEecHHHHHHHHHcC-----CcCCCcCccc
Confidence 3567999988642 223444443 99999999997543321 2799998653
No 170
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=51.52 E-value=0.87 Score=36.05 Aligned_cols=49 Identities=20% Similarity=0.533 Sum_probs=31.6
Q ss_pred ccccccccccCcCCCCCCceEeCCcCCc---ccccccCCCCCCCCCCCCceecccCchh
Q 006832 237 EHIICAKCKLREAFPDNDIVLCDGTCNC---AFHQKCLDPPLDTESRDQGWFCKFCECK 292 (629)
Q Consensus 237 e~~~C~vC~~~g~~~~~~lLlCDG~C~r---afH~~CL~PPL~~~p~dg~W~C~~C~~k 292 (629)
+...|.+|..... +.-+.-|. |.. .||..||..=+.. .+.+.|+.|...
T Consensus 5 ~~~~CrIC~~~~~--~~l~~PC~--C~gs~~~~H~~Cl~~W~~~---~~~~~C~~C~~~ 56 (60)
T 1vyx_A 5 DVPVCWICNEELG--NERFRACG--CTGELENVHRSCLSTWLTI---SRNTACQICGVV 56 (60)
T ss_dssp SCCEETTTTEECS--CCCCCSCC--CSSGGGSCCHHHHHHHHHH---HTCSBCTTTCCB
T ss_pred CCCEeEEeecCCC--CceecCcC--CCCchhhhHHHHHHHHHHh---CCCCccCCCCCe
Confidence 3467999987542 22344443 655 9999999864432 246889999754
No 171
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=51.29 E-value=9 Score=32.24 Aligned_cols=45 Identities=7% Similarity=0.050 Sum_probs=35.1
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccH
Q 006832 500 FHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYL 550 (629)
Q Consensus 500 r~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k 550 (629)
...+|+.+.+.|.-+|..-.| .+||+.||+++..|+.+..+-|.+
T Consensus 25 l~~Lt~~e~~vl~l~~~g~s~------~eIA~~l~is~~tV~~~l~r~~~k 69 (95)
T 3c57_A 25 LSGLTDQERTLLGLLSEGLTN------KQIADRMFLAEKTVKNYVSRLLAK 69 (95)
T ss_dssp --CCCHHHHHHHHHHHTTCCH------HHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHcCCCH------HHHHHHHCcCHHHHHHHHHHHHHH
Confidence 345899999999986544333 789999999999999988877763
No 172
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=51.20 E-value=5.3 Score=33.99 Aligned_cols=30 Identities=30% Similarity=0.757 Sum_probs=22.5
Q ss_pred ccccccccCcCCCCCCceEeC-CcCCcccccccC
Q 006832 239 IICAKCKLREAFPDNDIVLCD-GTCNCAFHQKCL 271 (629)
Q Consensus 239 ~~C~vC~~~g~~~~~~lLlCD-G~C~rafH~~CL 271 (629)
..|.+|+... .+..|.|. +.|..+||..|-
T Consensus 18 l~C~iC~~~~---~GAciqC~~~~C~~~fHv~CA 48 (87)
T 2lq6_A 18 LTCYLCKQKG---VGASIQCHKANCYTAFHVTCA 48 (87)
T ss_dssp CCBTTTTBCC---SSCEEECSCTTTCCEEEHHHH
T ss_pred CCCcCCCCCC---CcEeEecCCCCCCCcCcHHHH
Confidence 4699998642 24688887 249999999995
No 173
>1weq_A PHD finger protein 7; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=49.97 E-value=9.9 Score=32.54 Aligned_cols=33 Identities=33% Similarity=0.820 Sum_probs=26.6
Q ss_pred CCceEeCCcCC-cccccccCCCCCCCCCCCCceecccCc
Q 006832 253 NDIVLCDGTCN-CAFHQKCLDPPLDTESRDQGWFCKFCE 290 (629)
Q Consensus 253 ~~lLlCDG~C~-rafH~~CL~PPL~~~p~dg~W~C~~C~ 290 (629)
-.||+|. .|. .+-|..|.. |...+ ..|.|..|.
T Consensus 44 W~L~lC~-~Cgs~gtH~~Cs~--l~~~~--~~weC~~C~ 77 (85)
T 1weq_A 44 WRLILCA-TCGSHGTHRDCSS--LRPNS--KKWECNECL 77 (85)
T ss_dssp TBCEECS-SSCCCEECSGGGT--CCTTC--SCCCCTTTS
T ss_pred EEEEeCc-ccCCchhHHHHhC--CcCCC--CCEECCcCc
Confidence 5799999 698 589999998 44333 689999997
No 174
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=48.42 E-value=14 Score=32.40 Aligned_cols=48 Identities=10% Similarity=0.032 Sum_probs=36.2
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhh
Q 006832 502 RMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 555 (629)
Q Consensus 502 rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~K~~ 555 (629)
.+++.+...|. .|- ..| .-.+||+.||+++..|+.+....|.+.++.-
T Consensus 109 ~L~~~~r~v~~-~~~-~g~----s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l 156 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLI-RGY----SYREIATILSKNLKSIDNTIQRIRKKSEEWI 156 (164)
T ss_dssp HSCHHHHHHHH-HHT-TTC----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHH-cCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 46888888888 333 223 4578999999999999999988888555443
No 175
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=46.51 E-value=4.2 Score=36.61 Aligned_cols=45 Identities=18% Similarity=0.468 Sum_probs=30.5
Q ss_pred cccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCCCCCceecccCchhh
Q 006832 238 HIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCECKM 293 (629)
Q Consensus 238 ~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~k~ 293 (629)
+..|.+|...-. +.+... |...||..|+..-+.. .-.||.|....
T Consensus 53 ~~~C~iC~~~~~----~~~~~~--CgH~fc~~Ci~~~~~~-----~~~CP~Cr~~~ 97 (138)
T 4ayc_A 53 ELQCIICSEYFI----EAVTLN--CAHSFCSYCINEWMKR-----KIECPICRKDI 97 (138)
T ss_dssp HSBCTTTCSBCS----SEEEET--TSCEEEHHHHHHHTTT-----CSBCTTTCCBC
T ss_pred cCCCcccCcccC----CceECC--CCCCccHHHHHHHHHc-----CCcCCCCCCcC
Confidence 346999987642 334443 9999999998754433 23699997653
No 176
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=45.21 E-value=14 Score=27.44 Aligned_cols=39 Identities=10% Similarity=0.258 Sum_probs=28.8
Q ss_pred CC--HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccch
Q 006832 503 MP--PNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKN 546 (629)
Q Consensus 503 ft--~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQN 546 (629)
++ +.+...+...|. ..+ ...+||+.||++...|..|+..
T Consensus 14 l~~~~~~~~~i~~l~~-~g~----s~~eIA~~lgis~~TV~~~l~~ 54 (55)
T 2x48_A 14 VESEDDLVSVAHELAK-MGY----TVQQIANALGVSERKVRRYLES 54 (55)
T ss_dssp ECSHHHHHHHHHHHHH-TTC----CHHHHHHHHTSCHHHHHHHHTC
T ss_pred HhcCHHHHHHHHHHHH-cCC----CHHHHHHHHCcCHHHHHHHHHh
Confidence 45 666666666654 333 4668999999999999999853
No 177
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=45.20 E-value=8.4 Score=29.95 Aligned_cols=45 Identities=13% Similarity=0.152 Sum_probs=35.3
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccH
Q 006832 500 FHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYL 550 (629)
Q Consensus 500 r~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k 550 (629)
...+++.+.+.|..++ ..+ .-.+||+.||+++..|..++.+-+.+
T Consensus 9 ~~~L~~~e~~il~~~~--~g~----s~~eIA~~l~is~~tV~~~~~~~~~k 53 (74)
T 1fse_A 9 KPLLTKREREVFELLV--QDK----TTKEIASELFISEKTVRNHISNAMQK 53 (74)
T ss_dssp CCCCCHHHHHHHHHHT--TTC----CHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH--cCC----CHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3458999999998743 333 44689999999999999998877664
No 178
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=44.50 E-value=15 Score=33.36 Aligned_cols=49 Identities=10% Similarity=0.216 Sum_probs=37.5
Q ss_pred CCCCCCCCHHHHHHHHHHH-HhCCCCCHHHHHHHHH----Hh--CCCcchhhhccchhc
Q 006832 497 RRSFHRMPPNAVEKLRQVF-AENELPSRIVKENLSK----EL--SLEPEKVNKWFKNAR 548 (629)
Q Consensus 497 kR~r~rft~~Q~~~Le~~F-~~~~yPs~~~re~LA~----~l--gLt~~QVkiWFQNrR 548 (629)
+++|.++|.+|..+|-.++ ..++-.+ +.+||+ ++ |++..+|..|..|+-
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~---q~~la~wa~~~f~~~is~stis~ilk~k~ 61 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSG---QQDLIEWFREKFGKDISQPSVSQILSSKY 61 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCC---HHHHHHHHHHHHSSCCSSSSTTHHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHCCCCcHHHHHHHHhhHH
Confidence 4566788999999999998 6676654 445677 77 778888999987743
No 179
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.99 E-value=13 Score=29.10 Aligned_cols=49 Identities=27% Similarity=0.489 Sum_probs=33.0
Q ss_pred cccccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCCCCCceecccCchh
Q 006832 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCECK 292 (629)
Q Consensus 236 ~e~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~k 292 (629)
.+...|.+|...-. +.+... |...||..|+..-+... ...-.||.|...
T Consensus 18 ~~~~~C~IC~~~~~----~~~~~~--CgH~fC~~Ci~~~~~~~--~~~~~CP~Cr~~ 66 (73)
T 2ysl_A 18 QEEVICPICLDILQ----KPVTID--CGHNFCLKCITQIGETS--CGFFKCPLCKTS 66 (73)
T ss_dssp CCCCBCTTTCSBCS----SEEECT--TCCEEEHHHHHHHCSSS--CSCCCCSSSCCC
T ss_pred ccCCEeccCCcccC----CeEEcC--CCChhhHHHHHHHHHcC--CCCCCCCCCCCc
Confidence 34567999998642 333333 99999999998655422 235579999865
No 180
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=42.88 E-value=8.9 Score=29.91 Aligned_cols=48 Identities=15% Similarity=0.173 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccH
Q 006832 502 RMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYL 550 (629)
Q Consensus 502 rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k 550 (629)
.+++.+.+.|...|.-+.+-. ..-.+||+.||+++..|+.+....+.+
T Consensus 5 ~L~~~er~il~l~~~l~~~~g-~s~~eIA~~lgis~~tV~~~~~ra~~k 52 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTD-YTLEEVGKQFDVTRERIRQIEAKALRK 52 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSC-CCHHHHHHHHTCCHHHHHHHHHHHHHG
T ss_pred cCCHHHHHHHHHHHccCCCCC-CCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 478999999998884322222 233679999999999999987776663
No 181
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=41.99 E-value=9.1 Score=28.64 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=21.6
Q ss_pred HHHHHHHhCCCcchhhhccchhcc
Q 006832 526 KENLSKELSLEPEKVNKWFKNARY 549 (629)
Q Consensus 526 re~LA~~lgLt~~QVkiWFQNrR~ 549 (629)
..+||+.+|++...|..|..+++.
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~~ 40 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKYN 40 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSCC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 578999999999999999998764
No 182
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=41.85 E-value=6.5 Score=31.19 Aligned_cols=42 Identities=17% Similarity=0.226 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccH
Q 006832 503 MPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYL 550 (629)
Q Consensus 503 ft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k 550 (629)
+++.+.+.|.-+| ..+ .-.++|+.||+++..|+.++.+-+.+
T Consensus 17 L~~~e~~vl~l~~--~g~----s~~eIA~~l~is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 17 LSERERQVLSAVV--AGL----PNKSIAYDLDISPRTVEVHRANVMAK 58 (79)
T ss_dssp HCHHHHHHHHHHT--TTC----CHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH--cCC----CHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 6888888888743 333 23589999999999999988877764
No 183
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=41.53 E-value=16 Score=32.00 Aligned_cols=47 Identities=9% Similarity=0.179 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHH
Q 006832 502 RMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALK 553 (629)
Q Consensus 502 rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~K 553 (629)
.+++.|.+.|.-+|.+. -.-.++|+.||+++..|+.|....|.+.++
T Consensus 22 ~L~~~~r~vl~l~y~~g-----~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 68 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADD-----YSLAEIADEFGVSRQAVYDNIKRTEKILET 68 (113)
T ss_dssp GSCHHHHHHHHHHHHTC-----CCHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 47899999988876543 234789999999999999999998875443
No 184
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=41.18 E-value=9.5 Score=28.72 Aligned_cols=25 Identities=12% Similarity=0.299 Sum_probs=22.1
Q ss_pred HHHHHHHHhCCCcchhhhccchhcc
Q 006832 525 VKENLSKELSLEPEKVNKWFKNARY 549 (629)
Q Consensus 525 ~re~LA~~lgLt~~QVkiWFQNrR~ 549 (629)
...+||+.+|++...|..|..+++.
T Consensus 20 s~~~lA~~~gis~~~i~~~e~g~~~ 44 (68)
T 2r1j_L 20 RQAALGKMVGVSNVAISQWERSETE 44 (68)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred CHHHHHHHHCCCHHHHHHHHcCCCC
Confidence 3678999999999999999998765
No 185
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=40.58 E-value=9.6 Score=30.38 Aligned_cols=25 Identities=16% Similarity=0.376 Sum_probs=22.4
Q ss_pred HHHHHHHHhCCCcchhhhccchhcc
Q 006832 525 VKENLSKELSLEPEKVNKWFKNARY 549 (629)
Q Consensus 525 ~re~LA~~lgLt~~QVkiWFQNrR~ 549 (629)
...+||+.||++...|..|..+++.
T Consensus 13 sq~~lA~~lgvs~~~is~~e~g~~~ 37 (79)
T 3bd1_A 13 SVSALAASLGVRQSAISNWRARGRV 37 (79)
T ss_dssp SHHHHHHHHTCCHHHHHHHHHHTCC
T ss_pred CHHHHHHHHCCCHHHHHHHHHCCCC
Confidence 4689999999999999999998774
No 186
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=40.34 E-value=18 Score=28.55 Aligned_cols=51 Identities=8% Similarity=-0.013 Sum_probs=37.0
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHH
Q 006832 501 HRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLAL 552 (629)
Q Consensus 501 ~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~ 552 (629)
..+++.+.+.|...|.-.... .-.-.+||+.||++...|+.|....+.+.+
T Consensus 9 ~~L~~~er~il~l~~~l~~~~-~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 9 SKLSEREAMVLKMRKGLIDGR-EHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TTSCHHHHHHHHHHHTTTTSS-CCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHhcccCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 347999999999888521000 123358999999999999998887777443
No 187
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.72 E-value=6.7 Score=31.79 Aligned_cols=53 Identities=23% Similarity=0.408 Sum_probs=33.0
Q ss_pred ccccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCCCCCceecccCchhh
Q 006832 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCECKM 293 (629)
Q Consensus 237 e~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~k~ 293 (629)
+...|.+|...-.......+.. .|...||..|+..-+.... ....||.|....
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~--~CgH~fC~~Ci~~~~~~~~--~~~~CP~Cr~~~ 66 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLL--HCGHTICRQCLEKLLASSI--NGVRCPFCSKIT 66 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEEC--SSSCEEEHHHHHHHHHHCS--SCBCCTTTCCCB
T ss_pred CCCCCccCCccccccCCCeEEC--CCCChhhHHHHHHHHHcCC--CCcCCCCCCCcc
Confidence 4567999987643111113333 3999999999875443321 346899998653
No 188
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=39.62 E-value=10 Score=28.86 Aligned_cols=24 Identities=4% Similarity=0.090 Sum_probs=21.7
Q ss_pred HHHHHHHhCCCcchhhhccchhcc
Q 006832 526 KENLSKELSLEPEKVNKWFKNARY 549 (629)
Q Consensus 526 re~LA~~lgLt~~QVkiWFQNrR~ 549 (629)
..+||+.+|++...|..|..+++.
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~~ 42 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVTK 42 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 578999999999999999988765
No 189
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=39.61 E-value=7.6 Score=38.75 Aligned_cols=46 Identities=22% Similarity=0.462 Sum_probs=33.1
Q ss_pred cccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCCCCCceecccCch
Q 006832 238 HIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCEC 291 (629)
Q Consensus 238 ~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~ 291 (629)
...|.+|..--. .=+.|. .|...||..|+.--+... +.=-||.|..
T Consensus 180 i~~C~iC~~iv~----~g~~C~-~C~~~~H~~C~~~~~~~~---~~~~CP~C~~ 225 (238)
T 3nw0_A 180 VKICNICHSLLI----QGQSCE-TCGIRMHLPCVAKYFQSN---AEPRCPHCND 225 (238)
T ss_dssp CCBCTTTCSBCS----SCEECS-SSCCEECHHHHHHHTTTC---SSCBCTTTCC
T ss_pred CCcCcchhhHHh----CCcccC-ccChHHHHHHHHHHHHhC---CCCCCCCCCC
Confidence 567999998643 347898 699999999996443332 2346999864
No 190
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=38.70 E-value=4 Score=37.70 Aligned_cols=48 Identities=19% Similarity=0.434 Sum_probs=33.5
Q ss_pred ccccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCCCCCceecccCchhh
Q 006832 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCECKM 293 (629)
Q Consensus 237 e~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~k~ 293 (629)
+...|.+|...-. +-+.+- .|...||..|+..-+.. +...||.|....
T Consensus 53 ~~~~C~IC~~~~~----~p~~~~-~CgH~fC~~Ci~~~~~~----~~~~CP~Cr~~~ 100 (165)
T 2ckl_B 53 SELMCPICLDMLK----NTMTTK-ECLHRFCADCIITALRS----GNKECPTCRKKL 100 (165)
T ss_dssp HHHBCTTTSSBCS----SEEEET-TTCCEEEHHHHHHHHHT----TCCBCTTTCCBC
T ss_pred CCCCCcccChHhh----CcCEeC-CCCChhHHHHHHHHHHh----CcCCCCCCCCcC
Confidence 4568999987642 345554 39999999998754432 245799998654
No 191
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=38.23 E-value=4 Score=35.84 Aligned_cols=71 Identities=15% Similarity=0.331 Sum_probs=41.8
Q ss_pred ccccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCCCCCceecccCchhhHHHHhhhccCCccccccchhhhh
Q 006832 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCECKMEIIESMNAHIGTSFSVNSNWQDI 316 (629)
Q Consensus 237 e~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~k~~~l~~~n~~~gtsf~lp~~~~d~ 316 (629)
+...|.+|...-. +-+... |...||..|+..-+.. ....||.|...... ...+...+.|..-+..+
T Consensus 51 ~~~~C~IC~~~~~----~p~~~~--CgH~fC~~Ci~~~~~~----~~~~CP~Cr~~~~~----~~~~~~n~~l~~~i~~~ 116 (124)
T 3fl2_A 51 ETFQCICCQELVF----RPITTV--CQHNVCKDCLDRSFRA----QVFSCPACRYDLGR----SYAMQVNQPLQTVLNQL 116 (124)
T ss_dssp HHTBCTTTSSBCS----SEEECT--TSCEEEHHHHHHHHHT----TCCBCTTTCCBCCT----TCCCCCCHHHHHHHHHH
T ss_pred cCCCCCcCChHHc----CcEEee--CCCcccHHHHHHHHhH----CcCCCCCCCccCCC----CCCCCCCHHHHHHHHHH
Confidence 3467999987642 223333 9999999999754432 23589999876431 01223334444455566
Q ss_pred hcccc
Q 006832 317 FKEEA 321 (629)
Q Consensus 317 F~eva 321 (629)
|++..
T Consensus 117 ~p~~~ 121 (124)
T 3fl2_A 117 FPGYG 121 (124)
T ss_dssp STTTT
T ss_pred ccccc
Confidence 65543
No 192
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=38.15 E-value=11 Score=29.09 Aligned_cols=24 Identities=13% Similarity=0.405 Sum_probs=21.6
Q ss_pred HHHHHHHhCCCcchhhhccchhcc
Q 006832 526 KENLSKELSLEPEKVNKWFKNARY 549 (629)
Q Consensus 526 re~LA~~lgLt~~QVkiWFQNrR~ 549 (629)
..+||+.+|+++..|..|..+++.
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~~ 49 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKSQ 49 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 578999999999999999998764
No 193
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.96 E-value=5.6 Score=30.65 Aligned_cols=51 Identities=20% Similarity=0.461 Sum_probs=31.3
Q ss_pred cccccccccccCcCCC--CCCceEeCCcCCcccccccCCCCCCCCCCCCceecccCchh
Q 006832 236 HEHIICAKCKLREAFP--DNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCECK 292 (629)
Q Consensus 236 ~e~~~C~vC~~~g~~~--~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~k 292 (629)
.+...|.+|...-... ...++..- .|...||..|+..-+.. .-.||.|...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~-----~~~CP~Cr~~ 65 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN-----ANTCPTCRKK 65 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEEC-SSSCEEEHHHHHHHHHH-----CSSCTTTCCC
T ss_pred CCCCCCcccCccccccccccCCeEeC-CCCChhcHHHHHHHHHc-----CCCCCCCCCc
Confidence 3456799998753211 12333444 49999999998743322 1259999754
No 194
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=37.90 E-value=11 Score=31.08 Aligned_cols=51 Identities=16% Similarity=0.404 Sum_probs=32.7
Q ss_pred ccccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCCCCCceecccCchhh
Q 006832 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCECKM 293 (629)
Q Consensus 237 e~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~k~ 293 (629)
+...|.+|...-...+-.++-|. |...|+..|+.--+.. +...||.|....
T Consensus 10 ~~~~CpICle~~~~~d~~~~p~~--CGH~fC~~Cl~~~~~~----~~~~CP~CR~~~ 60 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDDINFFPCT--CGYQICRFCWHRIRTD----ENGLCPACRKPY 60 (78)
T ss_dssp CCCBCTTTCCBCCTTTTTCCSST--TSCCCCHHHHHHHTTS----SCSBCTTTCCBC
T ss_pred cCCcCCccCccCccccccccccC--CCCCcCHHHHHHHHhc----CCCCCCCCCCcc
Confidence 34679999985422222344453 8888888898643322 356899998654
No 195
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.64 E-value=13 Score=27.59 Aligned_cols=45 Identities=16% Similarity=0.463 Sum_probs=28.9
Q ss_pred ccccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCCCCCceecccC
Q 006832 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFC 289 (629)
Q Consensus 237 e~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C 289 (629)
+...|.+|...-. +.++ - .|...||..|+..-+.... ....||.|
T Consensus 14 ~~~~C~IC~~~~~---~p~~-~--~CgH~fC~~Ci~~~~~~~~--~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLK---EPVI-I--ECGHNFCKACITRWWEDLE--RDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCS---SCCC-C--SSCCCCCHHHHHHHTTSSC--CSCCCSCC
T ss_pred cCCCCccCCcccC---ccEe-C--CCCCccCHHHHHHHHHhcC--CCCCCCCC
Confidence 4567999987643 2222 2 3888899999876544321 34578877
No 196
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=36.02 E-value=10 Score=31.07 Aligned_cols=45 Identities=11% Similarity=0.231 Sum_probs=35.4
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccH
Q 006832 500 FHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYL 550 (629)
Q Consensus 500 r~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k 550 (629)
...+|+.+.+.|.-+|. . ..-.+||+.||++...|+.+..+-+.+
T Consensus 19 ~~~Lt~~e~~vl~l~~~--g----~s~~eIA~~l~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 19 VNQLTPRERDILKLIAQ--G----LPNKMIARRLDITESTVKVHVKHMLKK 63 (82)
T ss_dssp GGGSCHHHHHHHHHHTT--T----CCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HccCCHHHHHHHHHHHc--C----CCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 34589999999988532 2 255789999999999999988877764
No 197
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=35.94 E-value=13 Score=30.69 Aligned_cols=44 Identities=9% Similarity=0.050 Sum_probs=34.3
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccH
Q 006832 501 HRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYL 550 (629)
Q Consensus 501 ~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k 550 (629)
..+|+.+.+.|.-+|....| .+||+.||+++..|+.+..+-|.+
T Consensus 28 ~~Lt~~e~~vl~l~~~g~s~------~eIA~~l~is~~tV~~~l~r~~~k 71 (91)
T 2rnj_A 28 EMLTEREMEILLLIAKGYSN------QEIASASHITIKTVKTHVSNILSK 71 (91)
T ss_dssp GGCCSHHHHHHHHHHTTCCT------THHHHHHTCCHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHcCCCH------HHHHHHHCcCHHHHHHHHHHHHHH
Confidence 45899999999875443222 479999999999999988877763
No 198
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=35.49 E-value=20 Score=28.36 Aligned_cols=51 Identities=14% Similarity=0.344 Sum_probs=33.8
Q ss_pred ccccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCC--CCCceecccCchhh
Q 006832 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTES--RDQGWFCKFCECKM 293 (629)
Q Consensus 237 e~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p--~dg~W~C~~C~~k~ 293 (629)
+...|.+|...-. +.++ . .|...||..|+..-+.... ..+.-.||.|....
T Consensus 11 ~~~~C~IC~~~~~---~p~~-l--~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~ 63 (79)
T 2egp_A 11 EEVTCPICLELLT---EPLS-L--DCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISY 63 (79)
T ss_dssp CCCEETTTTEECS---SCCC-C--SSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCC
T ss_pred cCCCCcCCCcccC---CeeE-C--CCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcC
Confidence 3567999987642 2233 2 3889999999987665421 12356899998654
No 199
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=35.31 E-value=13 Score=28.63 Aligned_cols=25 Identities=12% Similarity=0.299 Sum_probs=22.1
Q ss_pred HHHHHHHHhCCCcchhhhccchhcc
Q 006832 525 VKENLSKELSLEPEKVNKWFKNARY 549 (629)
Q Consensus 525 ~re~LA~~lgLt~~QVkiWFQNrR~ 549 (629)
...+||+.+|++...|..|..+++.
T Consensus 20 s~~~lA~~~gis~~~i~~~e~g~~~ 44 (76)
T 1adr_A 20 RQAALGKMVGVSNVAISQWERSETE 44 (76)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCC
Confidence 4678999999999999999998765
No 200
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=35.24 E-value=14 Score=28.74 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=21.9
Q ss_pred HHHHHHHHhCCCcchhhhccchhcc
Q 006832 525 VKENLSKELSLEPEKVNKWFKNARY 549 (629)
Q Consensus 525 ~re~LA~~lgLt~~QVkiWFQNrR~ 549 (629)
...+||+.+|++...|..|..+++.
T Consensus 23 sq~~lA~~~gis~~~is~~e~g~~~ 47 (73)
T 3omt_A 23 TNLWLTETLDKNKTTVSKWCTNDVQ 47 (73)
T ss_dssp CHHHHHHHTTCCHHHHHHHHTTSSC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCC
Confidence 3578999999999999999998754
No 201
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=35.11 E-value=14 Score=27.99 Aligned_cols=24 Identities=4% Similarity=0.169 Sum_probs=21.6
Q ss_pred HHHHHHHhCCCcchhhhccchhcc
Q 006832 526 KENLSKELSLEPEKVNKWFKNARY 549 (629)
Q Consensus 526 re~LA~~lgLt~~QVkiWFQNrR~ 549 (629)
..+||+.+|++...|..|..+++.
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~~~ 40 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGKTK 40 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 678999999999999999988765
No 202
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=35.03 E-value=14 Score=28.71 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=22.1
Q ss_pred HHHHHHHHhCCCcchhhhccchhcc
Q 006832 525 VKENLSKELSLEPEKVNKWFKNARY 549 (629)
Q Consensus 525 ~re~LA~~lgLt~~QVkiWFQNrR~ 549 (629)
+..+||+.+|++...|..|..+++.
T Consensus 25 sq~~lA~~~gis~~~i~~~e~g~~~ 49 (77)
T 2b5a_A 25 SQEELADLAGLHRTYISEVERGDRN 49 (77)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCSC
T ss_pred CHHHHHHHHCCCHHHHHHHHCCCCC
Confidence 4678999999999999999988764
No 203
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=34.24 E-value=16 Score=28.34 Aligned_cols=20 Identities=20% Similarity=0.512 Sum_probs=18.6
Q ss_pred HHHHHHHHhCCCcchhhhcc
Q 006832 525 VKENLSKELSLEPEKVNKWF 544 (629)
Q Consensus 525 ~re~LA~~lgLt~~QVkiWF 544 (629)
...+||+.||++..-|..|+
T Consensus 12 tq~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 12 TQRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp SHHHHHHHHTCCHHHHHHCC
T ss_pred CHHHHHHHhCCCHHHHHHHH
Confidence 46889999999999999999
No 204
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=33.85 E-value=14 Score=29.29 Aligned_cols=25 Identities=12% Similarity=0.246 Sum_probs=22.3
Q ss_pred HHHHHHHHhCCCcchhhhccchhcc
Q 006832 525 VKENLSKELSLEPEKVNKWFKNARY 549 (629)
Q Consensus 525 ~re~LA~~lgLt~~QVkiWFQNrR~ 549 (629)
+..+||+.+|++...|..|..+++.
T Consensus 27 tq~~lA~~~gvs~~~is~~e~g~~~ 51 (80)
T 3kz3_A 27 SYESVADKMGMGQSAVAALFNGINA 51 (80)
T ss_dssp CHHHHHHHTTSCHHHHHHHHTTSSC
T ss_pred CHHHHHHHhCcCHHHHHHHHcCCCC
Confidence 3578999999999999999998875
No 205
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=33.66 E-value=22 Score=33.27 Aligned_cols=47 Identities=15% Similarity=0.196 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHH
Q 006832 502 RMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALK 553 (629)
Q Consensus 502 rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~K 553 (629)
.+++.+...|.-.|-+. -.-.+||+.||+++..|+.+....|.+.++
T Consensus 187 ~L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~ 233 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYEE-----LPAKEVAKILETSVSRVSQLKAKALERLRE 233 (239)
T ss_dssp TSCHHHHHHHHHHHTSC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhcC-----CCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 47899999998887432 345689999999999999999888885444
No 206
>4b2u_A S67; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=33.24 E-value=8.3 Score=27.13 Aligned_cols=12 Identities=25% Similarity=0.880 Sum_probs=10.1
Q ss_pred CCceecccCchh
Q 006832 281 DQGWFCKFCECK 292 (629)
Q Consensus 281 dg~W~C~~C~~k 292 (629)
+|+|.|..|+..
T Consensus 16 egdwcchkcvpe 27 (36)
T 4b2u_A 16 EGDWCCHKCVPE 27 (36)
T ss_dssp GCCSSSSEEEEE
T ss_pred ccCeeeeccccc
Confidence 689999999753
No 207
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=33.21 E-value=4.1 Score=34.65 Aligned_cols=48 Identities=23% Similarity=0.459 Sum_probs=34.5
Q ss_pred ccccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCCCCCceecccCchhh
Q 006832 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCECKM 293 (629)
Q Consensus 237 e~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~k~ 293 (629)
+...|.+|...-. +-+.|- .|...||..|+..-+... ...||.|....
T Consensus 21 ~~~~C~IC~~~~~----~p~~~~-~CgH~FC~~Ci~~~~~~~----~~~CP~Cr~~~ 68 (100)
T 3lrq_A 21 EVFRCFICMEKLR----DARLCP-HCSKLCCFSCIRRWLTEQ----RAQCPHCRAPL 68 (100)
T ss_dssp HHTBCTTTCSBCS----SEEECT-TTCCEEEHHHHHHHHHHT----CSBCTTTCCBC
T ss_pred CCCCCccCCcccc----CccccC-CCCChhhHHHHHHHHHHC----cCCCCCCCCcC
Confidence 4567999998642 566767 599999999997544322 25799998764
No 208
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=32.70 E-value=16 Score=28.35 Aligned_cols=23 Identities=17% Similarity=0.250 Sum_probs=21.4
Q ss_pred HHHHHHHhCCCcchhhhccchhc
Q 006832 526 KENLSKELSLEPEKVNKWFKNAR 548 (629)
Q Consensus 526 re~LA~~lgLt~~QVkiWFQNrR 548 (629)
..+||+.+|++...|..|..+++
T Consensus 23 q~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 23 INRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 57899999999999999999987
No 209
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=32.50 E-value=16 Score=28.00 Aligned_cols=25 Identities=20% Similarity=0.112 Sum_probs=22.1
Q ss_pred HHHHHHHHhCCCcchhhhccchhcc
Q 006832 525 VKENLSKELSLEPEKVNKWFKNARY 549 (629)
Q Consensus 525 ~re~LA~~lgLt~~QVkiWFQNrR~ 549 (629)
...+||+.+|++...|..|..+++.
T Consensus 28 s~~~lA~~~gis~~~i~~~e~g~~~ 52 (74)
T 1y7y_A 28 SQETLAFLSGLDRSYVGGVERGQRN 52 (74)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCSC
T ss_pred CHHHHHHHHCcCHHHHHHHHCCCCC
Confidence 4678999999999999999998764
No 210
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=32.47 E-value=0.83 Score=42.67 Aligned_cols=29 Identities=10% Similarity=-0.055 Sum_probs=22.2
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhCCCCCHH
Q 006832 496 IRRSFHRMPPNAVEKLRQVFAENELPSRI 524 (629)
Q Consensus 496 ~kR~r~rft~~Q~~~Le~~F~~~~yPs~~ 524 (629)
.||+|+.|+..|+++|+..|+.++||...
T Consensus 136 ~~rprt~~~~~q~~~l~~~f~~~~~~~~~ 164 (169)
T 2rgt_A 136 GSGGGTPMVAASPERHDGGLQANPVEVQS 164 (169)
T ss_dssp -----EEEECCCCEECCSSCCCCCCCCCC
T ss_pred CcCCCCcccHHHHHHHHHHHhCCCCcccc
Confidence 46788899999999999999999999753
No 211
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.37 E-value=12 Score=29.55 Aligned_cols=47 Identities=21% Similarity=0.392 Sum_probs=30.5
Q ss_pred ccccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCCCCCceecccCchhh
Q 006832 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCECKM 293 (629)
Q Consensus 237 e~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~k~ 293 (629)
+...|.+|...-. +-+... .|...||..|+..-+.. .-.||.|....
T Consensus 14 ~~~~C~IC~~~~~----~p~~~~-~CgH~fC~~Ci~~~~~~-----~~~CP~Cr~~~ 60 (72)
T 2djb_A 14 PYILCSICKGYLI----DATTIT-ECLHTFCKSCIVRHFYY-----SNRCPKCNIVV 60 (72)
T ss_dssp GGGSCTTTSSCCS----SCEECS-SSCCEECHHHHHHHHHH-----CSSCTTTCCCC
T ss_pred CCCCCCCCChHHH----CcCEEC-CCCCHHHHHHHHHHHHc-----CCcCCCcCccc
Confidence 4567999987642 234444 38899999998643322 23599997653
No 212
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=32.37 E-value=39 Score=29.12 Aligned_cols=43 Identities=12% Similarity=0.173 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhc
Q 006832 501 HRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNAR 548 (629)
Q Consensus 501 ~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR 548 (629)
..|+.++...+...+... + ...+||+.||++...|..|++.-+
T Consensus 5 ~~~s~~~r~~i~~~~~~G-~----s~~~ia~~lgis~~Tv~r~~~~~~ 47 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKDPV 47 (141)
T ss_dssp CCCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHSGG
T ss_pred ccCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHHccc
Confidence 357899888777777543 3 357899999999999999997543
No 213
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=32.06 E-value=6.9 Score=30.30 Aligned_cols=46 Identities=17% Similarity=0.361 Sum_probs=30.0
Q ss_pred ccccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCCCCCceecccCchh
Q 006832 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCECK 292 (629)
Q Consensus 237 e~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~k 292 (629)
....|.+|...-. +-+..- .|...||..|+..-+.. ...||.|...
T Consensus 4 ~~~~C~IC~~~~~----~~~~~~-~C~H~fc~~Ci~~~~~~-----~~~CP~Cr~~ 49 (68)
T 1chc_A 4 VAERCPICLEDPS----NYSMAL-PCLHAFCYVCITRWIRQ-----NPTCPLCKVP 49 (68)
T ss_dssp CCCCCSSCCSCCC----SCEEET-TTTEEESTTHHHHHHHH-----SCSTTTTCCC
T ss_pred CCCCCeeCCcccc----CCcEec-CCCCeeHHHHHHHHHhC-----cCcCcCCChh
Confidence 3467999987642 222344 49999999998743321 2369999755
No 214
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=30.89 E-value=32 Score=29.93 Aligned_cols=48 Identities=8% Similarity=0.113 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHh
Q 006832 502 RMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKA 554 (629)
Q Consensus 502 rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~K~ 554 (629)
.+++.+.+.|.-+|-.. -.-.++|+.||+++..|+.+....|.+.++.
T Consensus 25 ~L~~~~r~vl~l~~~~g-----~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~ 72 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLED-----YSLSEIADTFNVSRQAVYDNIRRTGDLVEDY 72 (113)
T ss_dssp GSCHHHHHHHHHHHTSC-----CCHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 47888888888775433 2347899999999999999999888855443
No 215
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=30.82 E-value=6.3 Score=33.53 Aligned_cols=48 Identities=17% Similarity=0.414 Sum_probs=31.6
Q ss_pred cccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCCCCCceecccCchhh
Q 006832 238 HIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCECKM 293 (629)
Q Consensus 238 ~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~k~ 293 (629)
...|.+|...-. +.++ . .|...||..|+..-+.... +...||.|....
T Consensus 21 ~~~C~IC~~~~~---~p~~-~--~CgH~fC~~Ci~~~~~~~~--~~~~CP~Cr~~~ 68 (112)
T 1jm7_A 21 ILECPICLELIK---EPVS-T--KCDHIFCKFCMLKLLNQKK--GPSQCPLCKNDI 68 (112)
T ss_dssp HTSCSSSCCCCS---SCCB-C--TTSCCCCSHHHHHHHHSSS--SSCCCTTTSCCC
T ss_pred CCCCcccChhhc---CeEE-C--CCCCHHHHHHHHHHHHhCC--CCCCCcCCCCcC
Confidence 356999987542 2233 2 3889999999875544332 456899998654
No 216
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=30.20 E-value=3.3 Score=32.32 Aligned_cols=52 Identities=19% Similarity=0.465 Sum_probs=32.4
Q ss_pred cccccccccccCcCCC--CCCceEeCCcCCcccccccCCCCCCCCCCCCceecccCchhh
Q 006832 236 HEHIICAKCKLREAFP--DNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCECKM 293 (629)
Q Consensus 236 ~e~~~C~vC~~~g~~~--~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~k~ 293 (629)
.+...|.+|...-..+ .+..+..- .|...||..|+..-+... -.||.|....
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~-----~~CP~Cr~~~ 61 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKNA-----NTCPTCRKKI 61 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEEC-TTSCEEEHHHHHHHHHHC-----SBCTTTCCBC
T ss_pred CCCCCCcccChhhhccccccCCeEeC-CCCChHhHHHHHHHHHcC-----CCCCCCCCcc
Confidence 3456799998753210 12344455 499999999997433221 2699997653
No 217
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=30.19 E-value=24 Score=28.89 Aligned_cols=32 Identities=25% Similarity=0.617 Sum_probs=21.9
Q ss_pred ccccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCCCCCceecccCchhh
Q 006832 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCECKM 293 (629)
Q Consensus 237 e~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~k~ 293 (629)
+...|.+|... ..|-|-| | +++-||..|-..+
T Consensus 7 e~pWC~ICneD------AtlrC~g-C------------------dgDLYC~rC~rE~ 38 (67)
T 2d8v_A 7 GLPWCCICNED------ATLRCAG-C------------------DGDLYCARCFREG 38 (67)
T ss_dssp CCSSCTTTCSC------CCEEETT-T------------------TSEEECSSHHHHH
T ss_pred CCCeeEEeCCC------CeEEecC-C------------------CCceehHHHHHHH
Confidence 34568888753 4677875 7 4678999997554
No 218
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=29.97 E-value=18 Score=29.69 Aligned_cols=25 Identities=20% Similarity=0.539 Sum_probs=22.1
Q ss_pred HHHHHHHHhCCCcchhhhccchhcc
Q 006832 525 VKENLSKELSLEPEKVNKWFKNARY 549 (629)
Q Consensus 525 ~re~LA~~lgLt~~QVkiWFQNrR~ 549 (629)
...+||+.+|++...|..|..+++.
T Consensus 24 sq~~lA~~~gis~~~is~~e~G~~~ 48 (94)
T 2kpj_A 24 TQLEIAKSIGVSPQTFNTWCKGIAI 48 (94)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTSCC
T ss_pred CHHHHHHHHCcCHHHHHHHHhCCCC
Confidence 4678999999999999999998765
No 219
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.55 E-value=15 Score=28.49 Aligned_cols=44 Identities=30% Similarity=0.603 Sum_probs=30.5
Q ss_pred ccccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCCCCCceecccCchh
Q 006832 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCECK 292 (629)
Q Consensus 237 e~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~k 292 (629)
+...|.+|...-. + +.- .|...||..|+..-+.. ...||.|...
T Consensus 14 ~~~~C~IC~~~~~----~-~~~--~CgH~fc~~Ci~~~~~~-----~~~CP~Cr~~ 57 (70)
T 2ecn_A 14 DEEECCICMDGRA----D-LIL--PCAHSFCQKCIDKWSDR-----HRNCPICRLQ 57 (70)
T ss_dssp CCCCCSSSCCSCC----S-EEE--TTTEEECHHHHHHSSCC-----CSSCHHHHHC
T ss_pred CCCCCeeCCcCcc----C-ccc--CCCCcccHHHHHHHHHC-----cCcCCCcCCc
Confidence 3567999988642 2 333 39999999999864442 3579988754
No 220
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=29.47 E-value=19 Score=29.00 Aligned_cols=24 Identities=8% Similarity=0.152 Sum_probs=21.9
Q ss_pred HHHHHHHHhCCCcchhhhccchhc
Q 006832 525 VKENLSKELSLEPEKVNKWFKNAR 548 (629)
Q Consensus 525 ~re~LA~~lgLt~~QVkiWFQNrR 548 (629)
...+||+.+|++...|..|..+++
T Consensus 33 sq~elA~~~gis~~~is~~e~g~~ 56 (83)
T 2a6c_A 33 TQFKAAELLGVTQPRVSDLMRGKI 56 (83)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTTCG
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCC
Confidence 367899999999999999999887
No 221
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=29.06 E-value=5.8 Score=30.06 Aligned_cols=50 Identities=20% Similarity=0.487 Sum_probs=30.3
Q ss_pred cccccccccCcCCC--CCCceEeCCcCCcccccccCCCCCCCCCCCCceecccCchhh
Q 006832 238 HIICAKCKLREAFP--DNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCECKM 293 (629)
Q Consensus 238 ~~~C~vC~~~g~~~--~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~k~ 293 (629)
...|.+|...-..+ .+..+..- .|...||..|+..-+.. ...||.|....
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~-----~~~CP~Cr~~~ 54 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN-----ANTCPTCRKKI 54 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEE-TTSCEEEHHHHHHHHHH-----CSBCTTTCCBC
T ss_pred CCCCCccChhhhCccccCCCEEeC-CCCCchhHHHHHHHHHc-----CCCCCCCCccC
Confidence 45699998753210 12233334 49999999998743322 23699997653
No 222
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=28.29 E-value=33 Score=31.13 Aligned_cols=46 Identities=13% Similarity=0.060 Sum_probs=35.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHH
Q 006832 503 MPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALK 553 (629)
Q Consensus 503 ft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~K 553 (629)
+++.+...|.-.|-+. | .-.+||+.||+++..|+.+....|.+.++
T Consensus 141 L~~~~r~vl~l~~~~g-~----s~~EIA~~lgis~~tV~~~l~ra~~~Lr~ 186 (194)
T 1or7_A 141 LPEDLRMAITLRELDG-L----SYEEIAAIMDCPVGTVRSRIFRAREAIDN 186 (194)
T ss_dssp SCHHHHHHHHHHHTTC-C----CHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHcC-C----CHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 6888888887765432 2 23689999999999999999888885444
No 223
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=28.11 E-value=25 Score=27.75 Aligned_cols=41 Identities=12% Similarity=0.202 Sum_probs=33.6
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhcc
Q 006832 502 RMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARY 549 (629)
Q Consensus 502 rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~ 549 (629)
.|+.+.+..|.....- +..+||+.+|++...|..|-++++.
T Consensus 10 ~~~g~~lr~~R~~~gl-------tq~elA~~~gvs~~tis~~E~G~~~ 50 (73)
T 3fmy_A 10 TVAPEFIVKVRKKLSL-------TQKEASEIFGGGVNAFSRYEKGNAX 50 (73)
T ss_dssp CCCHHHHHHHHHHTTC-------CHHHHHHHHCSCTTHHHHHHTTSSC
T ss_pred CCCHHHHHHHHHHcCC-------CHHHHHHHhCcCHHHHHHHHcCCCC
Confidence 4788888888765542 4688999999999999999998765
No 224
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=28.07 E-value=19 Score=25.11 Aligned_cols=11 Identities=27% Similarity=0.893 Sum_probs=9.0
Q ss_pred CCceecccCch
Q 006832 281 DQGWFCKFCEC 291 (629)
Q Consensus 281 dg~W~C~~C~~ 291 (629)
.|+|.|+.|..
T Consensus 3 ~gDW~C~~C~~ 13 (32)
T 2lk0_A 3 FEDWLCNKCCL 13 (32)
T ss_dssp CSEEECTTTCC
T ss_pred CCCCCcCcCcC
Confidence 48999999963
No 225
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=28.00 E-value=21 Score=28.09 Aligned_cols=25 Identities=20% Similarity=0.151 Sum_probs=22.1
Q ss_pred HHHHHHHHhCCCcchhhhccchhcc
Q 006832 525 VKENLSKELSLEPEKVNKWFKNARY 549 (629)
Q Consensus 525 ~re~LA~~lgLt~~QVkiWFQNrR~ 549 (629)
...+||+.+|++...|..|..+++.
T Consensus 25 sq~~lA~~~gis~~~i~~~e~g~~~ 49 (84)
T 2ef8_A 25 SQSELAIFLGLSQSDISKIESFERR 49 (84)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTSSC
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCCC
Confidence 3678999999999999999998764
No 226
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=27.98 E-value=26 Score=31.80 Aligned_cols=24 Identities=21% Similarity=0.465 Sum_probs=21.5
Q ss_pred HHHHHHHhCCCcchhhhccchhcc
Q 006832 526 KENLSKELSLEPEKVNKWFKNARY 549 (629)
Q Consensus 526 re~LA~~lgLt~~QVkiWFQNrR~ 549 (629)
...+|+.||+++.++..|+...|.
T Consensus 72 ~~~va~~lg~~~~~~RlW~~~~Rq 95 (130)
T 2kvr_A 72 VQSLSQTMGFPQDQIRLWPMQARS 95 (130)
T ss_dssp HHHHHHHHCCCGGGCEEEECCCCB
T ss_pred HHHHHHHhCCCcccEEEEEeecCC
Confidence 477899999999999999998885
No 227
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=27.49 E-value=8.5 Score=30.71 Aligned_cols=51 Identities=22% Similarity=0.488 Sum_probs=32.2
Q ss_pred ccccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCC-CCCceecccCchhh
Q 006832 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTES-RDQGWFCKFCECKM 293 (629)
Q Consensus 237 e~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p-~dg~W~C~~C~~k~ 293 (629)
+...|.+|...-. +-+.. .|...||..|+..-+.... ..+...||.|....
T Consensus 18 ~~~~C~IC~~~~~----~p~~~--~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~ 69 (85)
T 2ecw_A 18 EEVTCPICLELLK----EPVSA--DCNHSFCRACITLNYESNRNTDGKGNCPVCRVPY 69 (85)
T ss_dssp TTTSCTTTCSCCS----SCEEC--TTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCC
T ss_pred cCCCCcCCChhhC----cceeC--CCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcC
Confidence 4567999987642 22333 3888999999864332211 12467899998653
No 228
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=27.48 E-value=21 Score=28.21 Aligned_cols=25 Identities=20% Similarity=0.143 Sum_probs=22.1
Q ss_pred HHHHHHHHhCCCcchhhhccchhcc
Q 006832 525 VKENLSKELSLEPEKVNKWFKNARY 549 (629)
Q Consensus 525 ~re~LA~~lgLt~~QVkiWFQNrR~ 549 (629)
+..+||+.+|++...|..|..+++.
T Consensus 29 tq~elA~~~gis~~~is~~e~g~~~ 53 (83)
T 3f6w_A 29 TQKELAARLGRPQSFVSKTENAERR 53 (83)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred CHHHHHHHHCcCHHHHHHHHCCCCC
Confidence 4578999999999999999998765
No 229
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=27.47 E-value=72 Score=28.57 Aligned_cols=44 Identities=11% Similarity=0.165 Sum_probs=33.9
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhcc
Q 006832 501 HRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARY 549 (629)
Q Consensus 501 ~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~ 549 (629)
..|+.++...+...+... + ...+||+.||++...|..|++..+.
T Consensus 24 ~~~s~e~r~~ii~l~~~G-~----s~~~IA~~lgis~~TV~rwl~r~~~ 67 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAHQG-V----RPCDISRQLRVSHGCVSKILGRYYE 67 (159)
T ss_dssp CSSCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCSHHHHHHHCCSST
T ss_pred CCCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 358898888777777543 2 3567899999999999999986543
No 230
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=27.41 E-value=23 Score=28.20 Aligned_cols=25 Identities=12% Similarity=0.360 Sum_probs=21.9
Q ss_pred HHHHHHHHhCCCcchhhhccchhcc
Q 006832 525 VKENLSKELSLEPEKVNKWFKNARY 549 (629)
Q Consensus 525 ~re~LA~~lgLt~~QVkiWFQNrR~ 549 (629)
...+||+.+|++...|..|..+++.
T Consensus 27 sq~~lA~~~gis~~~i~~~e~g~~~ 51 (88)
T 2wiu_B 27 TQSELAKKIGIKQATISNFENNPDN 51 (88)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHCGGG
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCCC
Confidence 3678999999999999999998664
No 231
>4cpa_I Metallocarboxypeptidase inhibitor; hydrolase (C-terminal peptidase); 2.50A {Solanum tuberosum} SCOP: g.3.2.1 PDB: 1h20_A
Probab=27.36 E-value=24 Score=25.45 Aligned_cols=11 Identities=36% Similarity=1.129 Sum_probs=8.9
Q ss_pred CCceecccCch
Q 006832 281 DQGWFCKFCEC 291 (629)
Q Consensus 281 dg~W~C~~C~~ 291 (629)
.+.|||..|..
T Consensus 19 S~gw~CqaC~n 29 (38)
T 4cpa_I 19 SGAWFCQACWN 29 (38)
T ss_dssp CCCSSCCEEET
T ss_pred ccchHHHHHHh
Confidence 37899999974
No 232
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=26.97 E-value=14 Score=31.55 Aligned_cols=47 Identities=23% Similarity=0.574 Sum_probs=31.8
Q ss_pred ccccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCCCCCceecccCchhh
Q 006832 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCECKM 293 (629)
Q Consensus 237 e~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~k~ 293 (629)
+...|.+|...-. +-+... .|...||..|+..-+.. .-.||.|....
T Consensus 14 ~~~~C~IC~~~~~----~p~~~~-~CgH~fC~~Ci~~~~~~-----~~~CP~Cr~~~ 60 (108)
T 2ckl_A 14 PHLMCVLCGGYFI----DATTII-ECLHSFCKTCIVRYLET-----SKYCPICDVQV 60 (108)
T ss_dssp GGTBCTTTSSBCS----SEEEET-TTCCEEEHHHHHHHHTS-----CSBCTTTCCBS
T ss_pred CcCCCccCChHHh----CcCEeC-CCCChhhHHHHHHHHHh-----CCcCcCCCccc
Confidence 3567999987642 344454 39999999998754432 24799998653
No 233
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=26.95 E-value=6.1 Score=36.38 Aligned_cols=46 Identities=20% Similarity=0.473 Sum_probs=30.6
Q ss_pred cccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCCCCCceecccCchhh
Q 006832 238 HIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCECKM 293 (629)
Q Consensus 238 ~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~k~ 293 (629)
...|.+|...-. +-+.. .|...|+..|+..-+.. +...||.|....
T Consensus 78 ~~~C~IC~~~~~----~pv~~--~CgH~fC~~Ci~~~~~~----~~~~CP~Cr~~~ 123 (150)
T 1z6u_A 78 SFMCVCCQELVY----QPVTT--ECFHNVCKDCLQRSFKA----QVFSCPACRHDL 123 (150)
T ss_dssp HTBCTTTSSBCS----SEEEC--TTSCEEEHHHHHHHHHT----TCCBCTTTCCBC
T ss_pred CCEeecCChhhc----CCEEc--CCCCchhHHHHHHHHHh----CCCcCCCCCccC
Confidence 356999987642 23333 39999999998754432 234799998664
No 234
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.85 E-value=9.8 Score=30.67 Aligned_cols=46 Identities=17% Similarity=0.358 Sum_probs=30.9
Q ss_pred ccccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCCCCCceecccCchhh
Q 006832 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCECKM 293 (629)
Q Consensus 237 e~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~k~ 293 (629)
....|.+|...-. +-+. - .|...||..|+..-+.. ...||.|....
T Consensus 14 ~~~~C~IC~~~~~----~p~~-~-~CgH~fC~~Ci~~~~~~-----~~~CP~Cr~~~ 59 (81)
T 2csy_A 14 IPFRCFICRQAFQ----NPVV-T-KCRHYFCESCALEHFRA-----TPRCYICDQPT 59 (81)
T ss_dssp CCSBCSSSCSBCC----SEEE-C-TTSCEEEHHHHHHHHHH-----CSBCSSSCCBC
T ss_pred CCCCCcCCCchhc----CeeE-c-cCCCHhHHHHHHHHHHC-----CCcCCCcCccc
Confidence 4567999987642 2333 3 39999999998754432 23699998653
No 235
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=26.79 E-value=21 Score=27.97 Aligned_cols=24 Identities=4% Similarity=0.183 Sum_probs=21.6
Q ss_pred HHHHHHHhCCCcchhhhccchhcc
Q 006832 526 KENLSKELSLEPEKVNKWFKNARY 549 (629)
Q Consensus 526 re~LA~~lgLt~~QVkiWFQNrR~ 549 (629)
..+||+.+|++...|..|..+++.
T Consensus 18 q~~lA~~~gis~~~i~~~e~g~~~ 41 (77)
T 2k9q_A 18 AKSVAEEMGISRQQLCNIEQSETA 41 (77)
T ss_dssp HHHHHHHHTSCHHHHHHHHTCCSC
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 578999999999999999998764
No 236
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=26.68 E-value=25 Score=36.48 Aligned_cols=42 Identities=21% Similarity=0.556 Sum_probs=27.9
Q ss_pred ccccccccccCcC---------CCCCCceEeCCcCCcccccccCCCCCCCCCCCCceecccCchh
Q 006832 237 EHIICAKCKLREA---------FPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCECK 292 (629)
Q Consensus 237 e~~~C~vC~~~g~---------~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~k 292 (629)
...+|.||+..-. ..+-..+.|. .|...||+ ..+.|+.|-..
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs-~C~t~W~~-------------~R~~C~~Cg~~ 231 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQGGKETGLRYLSCS-LCACEWHY-------------VRIKCSHCEES 231 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEEEEEET-TTCCEEEC-------------CTTSCSSSCCC
T ss_pred cCCCCCCCCCcCceeEEeecCCCCCcEEEEeC-CCCCEEee-------------cCcCCcCCCCC
Confidence 4679999996321 1223578898 69998884 24568888654
No 237
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=26.64 E-value=15 Score=29.12 Aligned_cols=49 Identities=18% Similarity=0.521 Sum_probs=31.6
Q ss_pred cccccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCCCCCceecccCchh
Q 006832 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCECK 292 (629)
Q Consensus 236 ~e~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~k 292 (629)
.+...|.+|...-. +.++ -. .|...||..|+..-+... +...||.|...
T Consensus 13 ~~~~~C~IC~~~~~---~p~~-~~-~CgH~fC~~Ci~~~~~~~---~~~~CP~Cr~~ 61 (74)
T 2yur_A 13 PDELLCLICKDIMT---DAVV-IP-CCGNSYCDECIRTALLES---DEHTCPTCHQN 61 (74)
T ss_dssp CGGGSCSSSCCCCT---TCEE-CS-SSCCEECTTHHHHHHHHS---SSSCCSSSCCS
T ss_pred CCCCCCcCCChHHh---CCeE-cC-CCCCHHHHHHHHHHHHhc---CCCcCCCCCCc
Confidence 34567999987642 2333 33 288899999987544321 23579999864
No 238
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=26.55 E-value=55 Score=29.88 Aligned_cols=58 Identities=21% Similarity=0.464 Sum_probs=35.3
Q ss_pred ccccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCCCCCceecccCchhhHHH
Q 006832 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCECKMEII 296 (629)
Q Consensus 237 e~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~k~~~l 296 (629)
....|.+|...-....+.=..|- .|..-+=..|-.-...... ...|.|..|...+.+.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~-~C~~~VC~~C~~~~~~~~~-~~~W~C~vC~k~rel~ 111 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCE-DCKKNVCTKCGVETSNNRP-HPVWLCKICLEQREVW 111 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECT-TTCCEEETTSEEECCCSSS-SCCEEEHHHHHHHHHH
T ss_pred CCccccccCCCcccccCCCCCCC-CCCcccccccCCccCCCCC-ccceechhhHHHHHHH
Confidence 34678898875422334445666 3877666666553211112 4589999998877644
No 239
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.70 E-value=8.7 Score=29.36 Aligned_cols=45 Identities=27% Similarity=0.570 Sum_probs=27.8
Q ss_pred ccccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCCCCCceecccC
Q 006832 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFC 289 (629)
Q Consensus 237 e~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C 289 (629)
+...|.+|...-. +.+++ . |...||..|+..-+... .....||.|
T Consensus 19 ~~~~C~IC~~~~~---~p~~~-~--CgH~fC~~Ci~~~~~~~--~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDILQ---KPVTI-D--CGHNFCLKCITQIGETS--CGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBCS---SCEEC-T--TSSEECHHHHHHHHHHC--SSCCCCSCC
T ss_pred cCCCCCcCCchhC---CeEEe-C--CCCcchHHHHHHHHHcC--CCCCcCcCC
Confidence 4567999987642 23333 3 88889999986544321 123467776
No 240
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=25.50 E-value=23 Score=28.91 Aligned_cols=24 Identities=17% Similarity=0.439 Sum_probs=21.1
Q ss_pred HHHHHHHhCCCcchhhhccchhcc
Q 006832 526 KENLSKELSLEPEKVNKWFKNARY 549 (629)
Q Consensus 526 re~LA~~lgLt~~QVkiWFQNrR~ 549 (629)
..+||+.||++..-|..|+.+..-
T Consensus 13 ~~~lA~~lGVs~~aVs~W~~g~~i 36 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQWLQAGEI 36 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHTSC
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCC
Confidence 789999999999999999976443
No 241
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=25.49 E-value=23 Score=28.86 Aligned_cols=25 Identities=4% Similarity=0.268 Sum_probs=22.3
Q ss_pred HHHHHHHHhCCCcchhhhccchhcc
Q 006832 525 VKENLSKELSLEPEKVNKWFKNARY 549 (629)
Q Consensus 525 ~re~LA~~lgLt~~QVkiWFQNrR~ 549 (629)
...+||+.+|++...|..|+.+++.
T Consensus 23 tq~~lA~~~gis~~~is~~e~g~~~ 47 (94)
T 2ict_A 23 SLREFARAMEIAPSTASRLLTGKAA 47 (94)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHTSSC
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCCC
Confidence 3678999999999999999998764
No 242
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=25.42 E-value=42 Score=28.11 Aligned_cols=42 Identities=19% Similarity=0.233 Sum_probs=32.3
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhc
Q 006832 502 RMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNAR 548 (629)
Q Consensus 502 rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR 548 (629)
.|+.++...+...+. ..+ ...+||+.||++...|..|+...+
T Consensus 17 ~~s~~~r~~i~~~~~-~g~----s~~~ia~~lgis~~Tv~~w~~~~~ 58 (128)
T 1pdn_C 17 PLPNNIRLKIVEMAA-DGI----RPCVISRQLRVSHGCVSKILNRYQ 58 (128)
T ss_dssp CCCHHHHHHHHHHHH-TTC----CHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH-cCC----CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 578888877777775 333 246799999999999999997543
No 243
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=25.29 E-value=28 Score=33.19 Aligned_cols=25 Identities=12% Similarity=0.294 Sum_probs=21.4
Q ss_pred HHHHHHHHhCCCcchhhhccchhcc
Q 006832 525 VKENLSKELSLEPEKVNKWFKNARY 549 (629)
Q Consensus 525 ~re~LA~~lgLt~~QVkiWFQNrR~ 549 (629)
+..+||+.+|++...|..|..+++.
T Consensus 32 t~~~lA~~~gis~~~i~~~~~g~~~ 56 (236)
T 3bdn_A 32 SQESVADKMGMGQSGVGALFNGINA 56 (236)
T ss_dssp CSHHHHHHHTSCHHHHHHHTTTTSC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCC
Confidence 5678999999999999999988664
No 244
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=24.95 E-value=36 Score=29.22 Aligned_cols=24 Identities=17% Similarity=0.416 Sum_probs=16.3
Q ss_pred ccCCCCCCCCCCCCceecccCchhhH
Q 006832 269 KCLDPPLDTESRDQGWFCKFCECKME 294 (629)
Q Consensus 269 ~CL~PPL~~~p~dg~W~C~~C~~k~~ 294 (629)
.+-+.++...| .+|.||.|-....
T Consensus 56 I~pGT~fedlP--ddW~CPvCga~K~ 79 (87)
T 1s24_A 56 FTPGTRFEDIP--DDWCCPDCGATKE 79 (87)
T ss_dssp CCSCCCGGGCC--TTCCCSSSCCCGG
T ss_pred cCCCCChhHCC--CCCCCCCCCCCHH
Confidence 34445556666 6899999987543
No 245
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=24.68 E-value=25 Score=28.32 Aligned_cols=25 Identities=12% Similarity=0.294 Sum_probs=22.1
Q ss_pred HHHHHHHHhCCCcchhhhccchhcc
Q 006832 525 VKENLSKELSLEPEKVNKWFKNARY 549 (629)
Q Consensus 525 ~re~LA~~lgLt~~QVkiWFQNrR~ 549 (629)
...+||+.+|++...|..|..+++.
T Consensus 32 sq~~lA~~~gis~~~is~~e~g~~~ 56 (92)
T 1lmb_3 32 SQESVADKMGMGQSGVGALFNGINA 56 (92)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCC
Confidence 3688999999999999999998764
No 246
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=24.34 E-value=27 Score=27.61 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=22.1
Q ss_pred HHHHHHHHhCCCcchhhhccchhcc
Q 006832 525 VKENLSKELSLEPEKVNKWFKNARY 549 (629)
Q Consensus 525 ~re~LA~~lgLt~~QVkiWFQNrR~ 549 (629)
+..+||+.+|++...|..|..+++.
T Consensus 26 sq~~lA~~~gis~~~i~~~e~g~~~ 50 (82)
T 3s8q_A 26 TQEDLAYKSNLDRTYISGIERNSRN 50 (82)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCCC
T ss_pred CHHHHHHHhCcCHHHHHHHHCCCCC
Confidence 4678999999999999999998764
No 247
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=24.20 E-value=42 Score=25.38 Aligned_cols=17 Identities=24% Similarity=0.767 Sum_probs=12.2
Q ss_pred CCCCCCCCceecccCchhh
Q 006832 275 LDTESRDQGWFCKFCECKM 293 (629)
Q Consensus 275 L~~~p~dg~W~C~~C~~k~ 293 (629)
....| .+|.||.|-...
T Consensus 24 f~~lP--~dw~CP~Cg~~k 40 (46)
T 6rxn_A 24 FDQLP--DDWCCPVCGVSK 40 (46)
T ss_dssp GGGSC--TTCBCTTTCCBG
T ss_pred hhhCC--CCCcCcCCCCcH
Confidence 44555 579999998653
No 248
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=24.12 E-value=81 Score=26.42 Aligned_cols=47 Identities=15% Similarity=0.238 Sum_probs=37.8
Q ss_pred CCCCCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHhCC--Ccchhhhccc
Q 006832 499 SFHRMPPNAVEKLRQVFAE-----NELPSRIVKENLSKELSL--EPEKVNKWFK 545 (629)
Q Consensus 499 ~r~rft~~Q~~~Le~~F~~-----~~yPs~~~re~LA~~lgL--t~~QVkiWFQ 545 (629)
....++.+|+..|..+|.. +.|.+..+-..+-+.+|+ +..+|..+|+
T Consensus 26 ~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 26 RPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp SCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3456899999999999984 379999999888888875 5666777775
No 249
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=24.08 E-value=29 Score=28.41 Aligned_cols=25 Identities=4% Similarity=0.030 Sum_probs=22.3
Q ss_pred HHHHHHHHhCCCcchhhhccchhcc
Q 006832 525 VKENLSKELSLEPEKVNKWFKNARY 549 (629)
Q Consensus 525 ~re~LA~~lgLt~~QVkiWFQNrR~ 549 (629)
...+||+.+|++...|..|..+++.
T Consensus 19 tq~~lA~~~gis~~~is~~e~g~~~ 43 (99)
T 2l49_A 19 SRQQLADLTGVPYGTLSYYESGRST 43 (99)
T ss_dssp CHHHHHHHHCCCHHHHHHHTTTSSC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCC
Confidence 3578999999999999999999775
No 250
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=23.98 E-value=27 Score=29.22 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=22.3
Q ss_pred HHHHHHHHhCCCcchhhhccchhcc
Q 006832 525 VKENLSKELSLEPEKVNKWFKNARY 549 (629)
Q Consensus 525 ~re~LA~~lgLt~~QVkiWFQNrR~ 549 (629)
+..+||+.+|++...|..|..+++-
T Consensus 39 Tq~eLA~~~GiS~~tis~iE~G~~~ 63 (88)
T 3t76_A 39 KKGELREAVGVSKSTFAKLGKNENV 63 (88)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCCC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCc
Confidence 5688999999999999999999763
No 251
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=23.55 E-value=1e+02 Score=27.10 Aligned_cols=47 Identities=15% Similarity=0.152 Sum_probs=33.5
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHh--------C--CCcchhhhccchhcc
Q 006832 500 FHRMPPNAVEKLRQVFAENELPSRIVKENLSKEL--------S--LEPEKVNKWFKNARY 549 (629)
Q Consensus 500 r~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~l--------g--Lt~~QVkiWFQNrR~ 549 (629)
...+++++...|..++.+++..+.. +|+..| | ++...|..|+.....
T Consensus 88 ~~~~~~~~~~~I~~~~~~~~~~s~~---~i~~~l~~~~~~~~g~~~S~sTV~r~L~~~~~ 144 (149)
T 1k78_A 88 PKVATPKVVEKIAEYKRQNPTMFAW---EIRDRLLAERVCDNDTVPSVSSINRIIRTKVQ 144 (149)
T ss_dssp CSSSCHHHHHHHHHHHHHCTTCCHH---HHHHHHHHTTSSCTTTSCCHHHHHHHHHCC--
T ss_pred CCCCCHHHHHHHHHHHHhCcchhHH---HHHHHHHHhcccccCCCcCHHHHHHHHHHHhc
Confidence 3457999999999999888766543 455555 6 688889998865443
No 252
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=23.55 E-value=1.2e+02 Score=26.96 Aligned_cols=40 Identities=10% Similarity=0.190 Sum_probs=34.1
Q ss_pred CCCCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHhCCCcch
Q 006832 500 FHRMPPNAVEKLRQVFAE-----NELPSRIVKENLSKELSLEPEK 539 (629)
Q Consensus 500 r~rft~~Q~~~Le~~F~~-----~~yPs~~~re~LA~~lgLt~~Q 539 (629)
+..+|++|++.|..+|.. +.+.+..+-..+-+.||+.+..
T Consensus 7 ~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~~ 51 (153)
T 3i5g_B 7 RVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPD 51 (153)
T ss_dssp CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCCH
T ss_pred ccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCccH
Confidence 356899999999999984 4689999988888999987765
No 253
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=23.35 E-value=14 Score=30.95 Aligned_cols=47 Identities=15% Similarity=0.321 Sum_probs=31.4
Q ss_pred ccccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCCCCCceecccCchhh
Q 006832 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCECKM 293 (629)
Q Consensus 237 e~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~k~ 293 (629)
+...|.+|...-. +-+..- .|...||..|+..-+.. .-.||.|....
T Consensus 21 ~~~~C~IC~~~~~----~p~~~~-~CgH~fC~~Ci~~~~~~-----~~~CP~Cr~~~ 67 (99)
T 2y43_A 21 DLLRCGICFEYFN----IAMIIP-QCSHNYCSLCIRKFLSY-----KTQCPTCCVTV 67 (99)
T ss_dssp HHTBCTTTCSBCS----SEEECT-TTCCEEEHHHHHHHHTT-----CCBCTTTCCBC
T ss_pred CCCCcccCChhhC----CcCEEC-CCCCHhhHHHHHHHHHC-----CCCCCCCCCcC
Confidence 3467999987642 233343 39999999998754432 23799998654
No 254
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=23.33 E-value=28 Score=28.51 Aligned_cols=49 Identities=12% Similarity=0.104 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHH
Q 006832 502 RMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLA 551 (629)
Q Consensus 502 rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~ 551 (629)
.+++.+...|...|--..- ..-.-.+||..||++...|+.|....+.+.
T Consensus 18 ~L~~~er~vl~l~~~l~~~-~~~s~~EIA~~lgis~~tV~~~~~ra~~kL 66 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDG-KPKTLEEVGQYFNVTRERIRQIEVKALRKL 66 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 4789999999888852100 112346899999999999999887777643
No 255
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=23.15 E-value=29 Score=27.61 Aligned_cols=25 Identities=8% Similarity=0.080 Sum_probs=21.3
Q ss_pred HHHHHHHHhCCCcchhhhccch-hcc
Q 006832 525 VKENLSKELSLEPEKVNKWFKN-ARY 549 (629)
Q Consensus 525 ~re~LA~~lgLt~~QVkiWFQN-rR~ 549 (629)
+..+||+.+|++...|..|..+ ++.
T Consensus 25 tq~elA~~~gis~~~is~~E~G~~~~ 50 (78)
T 3qq6_A 25 SLSELAEKAGVAKSYLSSIERNLQTN 50 (78)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTSCCC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCCC
Confidence 4578999999999999999998 443
No 256
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=22.88 E-value=48 Score=31.85 Aligned_cols=44 Identities=11% Similarity=0.107 Sum_probs=35.2
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccH
Q 006832 501 HRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYL 550 (629)
Q Consensus 501 ~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k 550 (629)
..+|+.+.+.|.-.+.- + .-.+||+.||+++..|+....|-+.|
T Consensus 174 ~~Lt~~e~~vl~~~~~g--~----s~~eIa~~l~is~~tV~~~~~~~~~k 217 (236)
T 2q0o_A 174 QMLSPREMLCLVWASKG--K----TASVTANLTGINARTVQHYLDKARAK 217 (236)
T ss_dssp GSCCHHHHHHHHHHHTT--C----CHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcC--C----CHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 45899999999775432 2 33789999999999999988887773
No 257
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=22.88 E-value=6.7 Score=33.98 Aligned_cols=52 Identities=21% Similarity=0.450 Sum_probs=33.6
Q ss_pred ccccccccccccCcCCC--CCCc-eEeCCcCCcccccccCCCCCCCCCCCCceecccCchhh
Q 006832 235 HHEHIICAKCKLREAFP--DNDI-VLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCECKM 293 (629)
Q Consensus 235 ~~e~~~C~vC~~~g~~~--~~~l-LlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~k~ 293 (629)
..+...|.+|...-... .+.+ +.+. |...||..|+.+-+.. ...||.|....
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~--CgH~fc~~Ci~~~~~~-----~~~CP~Cr~~~ 123 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTE--CGHVFCSQCLRDSLKN-----ANTCPTCRKKI 123 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEET--TSBEEEHHHHHHHHHH-----CSBCTTTCCBC
T ss_pred CCCCCCCCCCCCccccccccCcceEeCC--CCChhhHHHHHHHHHc-----CCCCCCCCCcC
Confidence 34556799998643210 1122 4443 9999999999875543 24899998653
No 258
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=22.42 E-value=35 Score=29.45 Aligned_cols=45 Identities=18% Similarity=0.463 Sum_probs=29.3
Q ss_pred ccccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCCCCCceecccCchhh
Q 006832 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCECKM 293 (629)
Q Consensus 237 e~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~k~ 293 (629)
+...|.+|...-. +.+++.. |...|+..|+.--+. ..||.|....
T Consensus 21 ~~~~C~IC~~~~~---~pv~~~~--CgH~fC~~Ci~~~~~-------~~CP~Cr~~~ 65 (117)
T 1jm7_B 21 KLLRCSRCTNILR---EPVCLGG--CEHIFCSNCVSDCIG-------TGCPVCYTPA 65 (117)
T ss_dssp HTTSCSSSCSCCS---SCBCCCS--SSCCBCTTTGGGGTT-------TBCSSSCCBC
T ss_pred hCCCCCCCChHhh---CccEeCC--CCCHHHHHHHHHHhc-------CCCcCCCCcC
Confidence 3567999987642 3444433 878888888764332 3699998653
No 259
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=22.33 E-value=29 Score=28.13 Aligned_cols=25 Identities=8% Similarity=0.309 Sum_probs=22.1
Q ss_pred HHHHHHHHhCCCcchhhhccchhcc
Q 006832 525 VKENLSKELSLEPEKVNKWFKNARY 549 (629)
Q Consensus 525 ~re~LA~~lgLt~~QVkiWFQNrR~ 549 (629)
...+||+.+|++...|..|..+++.
T Consensus 28 sq~~lA~~~gis~~~is~~e~g~~~ 52 (91)
T 1x57_A 28 TQKDLATKINEKPQVIADYESGRAI 52 (91)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHTCSC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCC
Confidence 3578999999999999999998764
No 260
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=22.27 E-value=84 Score=26.95 Aligned_cols=44 Identities=11% Similarity=0.161 Sum_probs=32.3
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhC--CCcchhhhccchhcc
Q 006832 502 RMPPNAVEKLRQVFAENELPSRIVKENLSKELS--LEPEKVNKWFKNARY 549 (629)
Q Consensus 502 rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lg--Lt~~QVkiWFQNrR~ 549 (629)
.+++++...+... ..++.-+. .+||..|| ++...|..|+.....
T Consensus 60 ~l~~~~~~~i~~~-~~~~~~s~---~~i~~~lg~~~s~~tV~r~l~~~g~ 105 (141)
T 1u78_A 60 ALSVRDERNVIRA-ASNSCKTA---RDIRNELQLSASKRTILNVIKRSGV 105 (141)
T ss_dssp SSCHHHHHHHHHH-HHHCCCCH---HHHHHHTTCCSCHHHHHHHHHHTC-
T ss_pred cCCHHHHHHHHHH-HhCCCCCH---HHHHHHHCCCccHHHHHHHHHHCCC
Confidence 4789988877776 55554443 57899999 688889999976554
No 261
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=22.16 E-value=33 Score=28.12 Aligned_cols=23 Identities=17% Similarity=0.391 Sum_probs=15.5
Q ss_pred cCCCCCCCCCCCCceecccCchhhH
Q 006832 270 CLDPPLDTESRDQGWFCKFCECKME 294 (629)
Q Consensus 270 CL~PPL~~~p~dg~W~C~~C~~k~~ 294 (629)
.-+.+....| .+|.||.|-....
T Consensus 29 ~pGT~f~~lP--ddw~CP~Cga~K~ 51 (70)
T 1dx8_A 29 PPGTPFVDLS--DSFMCPACRSPKN 51 (70)
T ss_dssp CSSCCGGGSC--TTCBCTTTCCBGG
T ss_pred CCCCchhhCC--CCCcCCCCCCCHH
Confidence 3334455566 6899999987643
No 262
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=22.00 E-value=31 Score=25.80 Aligned_cols=24 Identities=17% Similarity=0.144 Sum_probs=21.1
Q ss_pred HHHHHHhCCCcchhhhccchhccH
Q 006832 527 ENLSKELSLEPEKVNKWFKNARYL 550 (629)
Q Consensus 527 e~LA~~lgLt~~QVkiWFQNrR~k 550 (629)
.++|+.||+++..|+.+..+-+.+
T Consensus 17 ~eIA~~l~is~~tV~~~~~~~~~k 40 (61)
T 2jpc_A 17 HGISEKLHISIKTVETHRMNMMRK 40 (61)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHH
Confidence 589999999999999988877763
No 263
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=21.67 E-value=44 Score=31.27 Aligned_cols=55 Identities=22% Similarity=0.511 Sum_probs=35.2
Q ss_pred ccccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCCCCCceecccCchhhHHH
Q 006832 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCECKMEII 296 (629)
Q Consensus 237 e~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~k~~~l 296 (629)
....|..|..+-....+.=..|- .|..-+-..|-.- .+.+..|.|..|...+.+.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~-~C~~~VC~~C~~~----~~~~~~W~C~vC~k~rel~ 121 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCL-ECSLFVCKSCSHA----HPEEQGWLCDPCHLARVVK 121 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECT-TTCCEECGGGEEC----CSSSSSCEEHHHHHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCC-CCCchhhcccccc----cCCCCcEeeHHHHHHHHHH
Confidence 35679999886222334455666 3877776677631 1125789999998876643
No 264
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A*
Probab=21.30 E-value=12 Score=40.74 Aligned_cols=58 Identities=24% Similarity=0.504 Sum_probs=32.3
Q ss_pred cccccccccCcCCCCCCceEeCCcCCcccc--------cccCCCCCCCCCCCCceecccCchhhHHHH
Q 006832 238 HIICAKCKLREAFPDNDIVLCDGTCNCAFH--------QKCLDPPLDTESRDQGWFCKFCECKMEIIE 297 (629)
Q Consensus 238 ~~~C~vC~~~g~~~~~~lLlCDG~C~rafH--------~~CL~PPL~~~p~dg~W~C~~C~~k~~~l~ 297 (629)
...|.||+.......-..+.|.| |...|. ..|..-.--.+.....+.|..|+-+ .|+.
T Consensus 137 ~~~C~VCg~~a~g~hygv~sC~~-Ck~FFrR~~~~~~~~~C~~~~~C~i~~~~r~~C~~CR~~-KCl~ 202 (467)
T 3dzy_A 137 KHICAICGDRSSGKHYGVYSCEG-CKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQ-KCLA 202 (467)
T ss_dssp CEECTTTSSEECSEETTEECCHH-HHHHHHHHHHTTCCCCCSSSSCCCCCSSSSSSCHHHHHH-HHHH
T ss_pred CCcceeCCCCCCCCcCCCcchhh-hhHhccccccCCCceeCCCCCCCCCCcccccccccchhh-hhhh
Confidence 45699999754332345788995 965443 2454322111112356788888653 3443
No 265
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=21.22 E-value=59 Score=24.38 Aligned_cols=42 Identities=19% Similarity=0.651 Sum_probs=27.3
Q ss_pred ccccccccccCcCCCCCCceEeCCcCCcccccccCCCCCCCCCCCCceecccCchh
Q 006832 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESRDQGWFCKFCECK 292 (629)
Q Consensus 237 e~~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~~p~dg~W~C~~C~~k 292 (629)
+...|.+|...-. +-.++ .|...|+..|+.. ....||.|...
T Consensus 5 ~~~~C~IC~~~~~--~p~~l----~CgH~fC~~Ci~~--------~~~~CP~Cr~~ 46 (56)
T 1bor_A 5 QFLRCQQCQAEAK--CPKLL----PCLHTLCSGCLEA--------SGMQCPICQAP 46 (56)
T ss_dssp CCSSCSSSCSSCB--CCSCS----TTSCCSBTTTCSS--------SSSSCSSCCSS
T ss_pred cCCCceEeCCccC--CeEEc----CCCCcccHHHHcc--------CCCCCCcCCcE
Confidence 4567999987643 11233 3777788888764 13469999755
No 266
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=21.16 E-value=55 Score=28.12 Aligned_cols=51 Identities=14% Similarity=0.140 Sum_probs=37.2
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHH
Q 006832 502 RMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALK 553 (629)
Q Consensus 502 rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k~~K 553 (629)
.+++.|...|.-.|..+.+- .-.-.+||+.||++...|+......+.+.++
T Consensus 19 ~Lp~reR~Vi~Lry~l~~~e-~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~ 69 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDMNT-DYTLEEVGKQFDVTRERIRQIEAKALRKLRH 69 (99)
T ss_pred cCCHHHHHHHHHHHhcCCCC-CCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 47888988888888643221 2245789999999999999987777664443
No 267
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=21.15 E-value=63 Score=26.91 Aligned_cols=44 Identities=11% Similarity=0.162 Sum_probs=33.9
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhcc
Q 006832 500 FHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARY 549 (629)
Q Consensus 500 r~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~ 549 (629)
...||+.+.+.|.-++. .| .-.+||..||+++..|+....+-+.
T Consensus 27 ~~~Lt~rE~~Vl~l~~~--G~----s~~eIA~~L~iS~~TV~~~~~~i~~ 70 (90)
T 3ulq_B 27 QDVLTPRECLILQEVEK--GF----TNQEIADALHLSKRSIEYSLTSIFN 70 (90)
T ss_dssp --CCCHHHHHHHHHHHT--TC----CHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45689999999987763 33 4678999999999999987766554
No 268
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=21.06 E-value=41 Score=30.60 Aligned_cols=42 Identities=14% Similarity=0.165 Sum_probs=35.4
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccH
Q 006832 508 VEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYL 550 (629)
Q Consensus 508 ~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR~k 550 (629)
+.+..+.|.+..|-.. +-..||+..|++...|-..|.|+-.-
T Consensus 34 l~aa~~lf~~~G~~~~-tv~~IA~~agvs~~t~Y~~F~sK~~L 75 (215)
T 2qko_A 34 VNAAIEVLAREGARGL-TFRAVDVEANVPKGTASNYFPSRDDL 75 (215)
T ss_dssp HHHHHHHHHHTCTTTC-CHHHHHHHSSSTTTCHHHHCSCHHHH
T ss_pred HHHHHHHHHHhChhhc-cHHHHHHHcCCCcchHHHhCCCHHHH
Confidence 5577889999998654 45679999999999999999998874
No 269
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=20.83 E-value=61 Score=28.62 Aligned_cols=43 Identities=12% Similarity=0.185 Sum_probs=32.9
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhc
Q 006832 501 HRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNAR 548 (629)
Q Consensus 501 ~rft~~Q~~~Le~~F~~~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR 548 (629)
..|+.++.......+.. .+ ...+||+.||++...|..|+..-+
T Consensus 31 ~~~s~e~r~~iv~~~~~-G~----s~~~iA~~lgis~~TV~rw~~~~~ 73 (149)
T 1k78_A 31 RPLPDVVRQRIVELAHQ-GV----RPCDISRQLRVSHGCVSKILGRYY 73 (149)
T ss_dssp SCCCHHHHHHHHHHHHT-TC----CHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHc-CC----CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 35899888777777753 33 346799999999999999997544
No 270
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=20.43 E-value=31 Score=24.12 Aligned_cols=11 Identities=36% Similarity=1.045 Sum_probs=9.0
Q ss_pred CCceecccCch
Q 006832 281 DQGWFCKFCEC 291 (629)
Q Consensus 281 dg~W~C~~C~~ 291 (629)
.|+|.|+.|-.
T Consensus 4 ~gDW~C~~C~~ 14 (33)
T 2k1p_A 4 ANDWQCKTCSN 14 (33)
T ss_dssp SSSCBCSSSCC
T ss_pred CCCcccCCCCC
Confidence 48999999963
No 271
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=20.40 E-value=71 Score=28.87 Aligned_cols=44 Identities=11% Similarity=0.154 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHHHHh----CCCCCHHHHHHHHHHhCCCcchhhhccchhc
Q 006832 502 RMPPNAVEKLRQVFAE----NELPSRIVKENLSKELSLEPEKVNKWFKNAR 548 (629)
Q Consensus 502 rft~~Q~~~Le~~F~~----~~yPs~~~re~LA~~lgLt~~QVkiWFQNrR 548 (629)
-+|..++-.|-..+.. +++|+.. .||+.+|+++.+|....++=-
T Consensus 29 gLs~~E~~lLl~L~~~~~~g~~~ps~~---~LA~~~~~s~~~v~~~L~~L~ 76 (135)
T 2v79_A 29 GLNETELILLLKIKMHLEKGSYFPTPN---QLQEGMSISVEECTNRLRMFI 76 (135)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCCSCCHH---HHHTTSSSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCCHH---HHHHHHCcCHHHHHHHHHHHH
Confidence 3678887777776663 5778774 699999999999998887643
No 272
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=20.37 E-value=35 Score=28.30 Aligned_cols=24 Identities=13% Similarity=0.288 Sum_probs=21.4
Q ss_pred HHHHHHHhCCCcchhhhccchhcc
Q 006832 526 KENLSKELSLEPEKVNKWFKNARY 549 (629)
Q Consensus 526 re~LA~~lgLt~~QVkiWFQNrR~ 549 (629)
..+||+.||++...|..|-.+++.
T Consensus 46 q~elA~~lgvs~~~is~~E~G~~~ 69 (99)
T 2ppx_A 46 QEEFSARYHIPLGTLRDWEQGRSE 69 (99)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSSC
T ss_pred HHHHHHHhCcCHHHHHHHHcCCCC
Confidence 578999999999999999988765
No 273
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=20.17 E-value=36 Score=27.06 Aligned_cols=24 Identities=8% Similarity=-0.002 Sum_probs=22.0
Q ss_pred HHHHHHHHhCCCcchhhhccchhc
Q 006832 525 VKENLSKELSLEPEKVNKWFKNAR 548 (629)
Q Consensus 525 ~re~LA~~lgLt~~QVkiWFQNrR 548 (629)
...+||+.+|++...|..|..+++
T Consensus 29 sq~~lA~~~gis~~~is~~E~g~~ 52 (86)
T 2ofy_A 29 SMVTVAFDAGISVETLRKIETGRI 52 (86)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCC
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCC
Confidence 556999999999999999999887
Done!