Query 006833
Match_columns 629
No_of_seqs 155 out of 183
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 10:10:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006833.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006833hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 97.9 0.022 7.5E-07 55.4 44.0 10 51-60 6-15 (284)
2 1i84_S Smooth muscle myosin he 97.4 0.00039 1.3E-08 84.6 10.8 47 42-88 855-901 (1184)
3 1i84_S Smooth muscle myosin he 97.2 0.001 3.5E-08 81.0 10.7 11 407-417 1152-1162(1184)
4 3na7_A HP0958; flagellar bioge 96.3 0.32 1.1E-05 49.0 19.9 135 316-450 19-155 (256)
5 3na7_A HP0958; flagellar bioge 94.9 2.8 9.6E-05 42.0 20.7 66 303-368 20-85 (256)
6 3vkg_A Dynein heavy chain, cyt 93.8 7.9 0.00027 51.7 26.1 83 479-561 2010-2095(3245)
7 3vkg_A Dynein heavy chain, cyt 93.7 10 0.00035 50.7 26.7 69 301-369 2028-2096(3245)
8 2v71_A Nuclear distribution pr 93.2 6.4 0.00022 38.0 20.2 47 211-257 9-59 (189)
9 3swk_A Vimentin; cytoskeleton, 90.0 3.3 0.00011 35.0 10.9 41 52-92 1-41 (86)
10 2efr_A General control protein 90.0 13 0.00043 34.9 21.6 104 334-437 26-129 (155)
11 3ol1_A Vimentin; structural ge 86.1 18 0.00061 32.1 15.9 45 48-92 17-61 (119)
12 2dfs_A Myosin-5A; myosin-V, in 83.4 15 0.00052 44.3 15.7 61 305-368 981-1041(1080)
13 2eqb_B RAB guanine nucleotide 83.1 22 0.00074 30.7 12.2 26 388-413 65-90 (97)
14 3mq7_A Bone marrow stromal ant 81.8 17 0.0006 32.2 11.3 62 297-368 28-89 (121)
15 3oja_B Anopheles plasmodium-re 73.7 89 0.003 34.2 17.3 43 407-456 538-580 (597)
16 3u1c_A Tropomyosin alpha-1 cha 71.8 48 0.0016 28.5 12.3 98 379-490 3-100 (101)
17 2v71_A Nuclear distribution pr 68.7 85 0.0029 30.2 24.0 45 217-261 110-155 (189)
18 3oja_B Anopheles plasmodium-re 67.9 46 0.0016 36.5 13.3 46 382-427 534-579 (597)
19 3i00_A HIP-I, huntingtin-inter 65.8 30 0.001 30.9 9.0 36 381-416 43-78 (120)
20 3tnu_B Keratin, type II cytosk 64.3 19 0.00063 32.3 7.5 66 299-367 34-99 (129)
21 1ic2_A Tropomyosin alpha chain 62.7 57 0.0019 26.8 9.6 63 40-102 9-71 (81)
22 2dfs_A Myosin-5A; myosin-V, in 61.2 1.2E+02 0.0042 36.5 15.9 17 351-367 985-1001(1080)
23 3o0z_A RHO-associated protein 60.5 1.1E+02 0.0039 28.7 21.0 16 173-188 6-21 (168)
24 3tnu_A Keratin, type I cytoske 60.1 18 0.00062 32.5 6.7 18 350-367 84-101 (131)
25 3hnw_A Uncharacterized protein 53.5 73 0.0025 29.0 9.6 31 316-346 69-99 (138)
26 2e7s_A RAB guanine nucleotide 51.3 80 0.0027 28.8 9.3 37 388-424 85-121 (135)
27 3swk_A Vimentin; cytoskeleton, 47.9 1.2E+02 0.0041 25.2 10.5 60 379-438 22-81 (86)
28 2b9c_A Striated-muscle alpha t 45.3 1.8E+02 0.0062 26.6 11.5 61 494-554 52-112 (147)
29 1ic2_A Tropomyosin alpha chain 45.0 1.3E+02 0.0043 24.6 11.0 57 383-439 4-60 (81)
30 2q6q_A Spindle POLE BODY compo 43.9 1.1E+02 0.0036 24.7 7.7 53 308-360 10-62 (74)
31 3hrn_A Transient receptor pote 40.5 1.1E+02 0.0037 24.4 7.2 39 473-522 3-41 (64)
32 3u1c_A Tropomyosin alpha-1 cha 39.9 1.8E+02 0.006 24.8 14.2 62 307-368 8-69 (101)
33 3nmd_A CGMP dependent protein 39.7 75 0.0026 25.9 6.4 34 228-261 32-65 (72)
34 3s4r_A Vimentin; alpha-helix, 39.4 54 0.0018 27.8 5.9 39 50-88 55-93 (93)
35 2pms_C Pneumococcal surface pr 38.4 2.2E+02 0.0075 25.5 10.8 78 240-341 10-87 (125)
36 2v66_B Nuclear distribution pr 38.2 2.1E+02 0.0071 25.2 16.0 47 215-261 55-102 (111)
37 3o0z_A RHO-associated protein 37.6 2.7E+02 0.0091 26.2 21.7 102 297-398 9-110 (168)
38 2i1j_A Moesin; FERM, coiled-co 37.1 49 0.0017 37.0 6.8 45 49-93 333-377 (575)
39 3ni0_A Bone marrow stromal ant 36.8 2E+02 0.0068 24.6 10.1 67 297-370 21-87 (99)
40 2fxo_A Myosin heavy chain, car 35.1 2.4E+02 0.0081 25.0 16.9 45 217-261 11-59 (129)
41 1txp_A HnRNP C, heterogeneous 35.0 30 0.001 23.0 2.7 21 133-153 1-21 (28)
42 3ol1_A Vimentin; structural ge 34.8 2.3E+02 0.008 24.8 13.7 60 381-440 44-103 (119)
43 3ghg_A Fibrinogen alpha chain; 33.6 2.6E+02 0.0088 30.9 11.3 95 229-360 60-155 (562)
44 1wt6_A Myotonin-protein kinase 31.9 1.3E+02 0.0044 25.0 6.7 45 325-369 27-71 (81)
45 2eqb_B RAB guanine nucleotide 31.7 2.5E+02 0.0084 24.1 13.0 41 382-422 51-92 (97)
46 1x79_B RAB GTPase binding effe 31.0 2.7E+02 0.0094 24.4 11.9 95 44-151 6-104 (112)
47 3u59_A Tropomyosin beta chain; 30.8 2.4E+02 0.0084 23.8 14.8 9 421-429 87-95 (101)
48 2jee_A YIIU; FTSZ, septum, coi 29.8 2.4E+02 0.0082 23.4 11.2 51 386-436 28-78 (81)
49 3qh9_A Liprin-beta-2; coiled-c 29.2 2.5E+02 0.0085 23.3 8.8 40 211-260 39-78 (81)
50 3i00_A HIP-I, huntingtin-inter 29.0 3E+02 0.01 24.3 10.1 18 299-316 20-37 (120)
51 2e7s_A RAB guanine nucleotide 28.5 3.4E+02 0.011 24.7 10.8 64 303-366 69-133 (135)
52 3u59_A Tropomyosin beta chain; 26.2 3E+02 0.01 23.3 14.0 12 351-362 52-63 (101)
53 2v66_B Nuclear distribution pr 23.6 3.7E+02 0.013 23.5 14.4 84 319-433 7-90 (111)
54 2efr_A General control protein 21.6 4.8E+02 0.016 24.1 22.4 66 297-362 80-145 (155)
55 3n27_A Fusion glycoprotein F0, 20.5 3.2E+02 0.011 22.6 7.0 27 297-323 49-75 (80)
56 3oja_A Leucine-rich immune mol 20.0 7.8E+02 0.027 25.9 14.5 45 389-433 432-476 (487)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=97.89 E-value=0.022 Score=55.42 Aligned_cols=10 Identities=10% Similarity=0.262 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 006833 51 RDISRYKESR 60 (629)
Q Consensus 51 ~el~k~Keql 60 (629)
+.|..++.++
T Consensus 6 ~~~~~l~~~~ 15 (284)
T 1c1g_A 6 KKMQMLKLDK 15 (284)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhH
Confidence 3333333333
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.40 E-value=0.00039 Score=84.64 Aligned_cols=47 Identities=17% Similarity=0.237 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006833 42 RARELHMARRDISRYKESRKAAESVKAQAESELSTARKTVKDLACRI 88 (629)
Q Consensus 42 ~e~eL~~aq~el~k~Keql~~aE~~K~qal~ELe~akr~ieeL~~kL 88 (629)
...++..+++++..++..+...+.....+...+......+.++...|
T Consensus 855 ~~~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L 901 (1184)
T 1i84_S 855 QEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKL 901 (1184)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666555554444444444444444444333
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.16 E-value=0.001 Score=81.02 Aligned_cols=11 Identities=27% Similarity=0.498 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH
Q 006833 407 ETAKIKEEIQK 417 (629)
Q Consensus 407 E~~~~k~E~e~ 417 (629)
++..++..++.
T Consensus 1152 ele~L~~~Iee 1162 (1184)
T 1i84_S 1152 ELEALKTELED 1162 (1184)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 4
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.29 E-value=0.32 Score=49.04 Aligned_cols=135 Identities=13% Similarity=0.103 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhhhHh--hHHHHHHHHHHH
Q 006833 316 EGFRFMASMDVIRNELRHVREETARLKKGEEKTELTVQNLNSKLLRAKAKLEAVSAAEEKANGIAG--NLAFTLEQLKTE 393 (629)
Q Consensus 316 E~~~l~~~vesLr~ELe~~K~el~~lke~e~~a~~~v~sL~~EL~k~kseLe~~~~~Eek~~~~~~--~l~~~Leql~~E 393 (629)
++..|..-...|..+|......+..++.........+..+..++.+...++..++..-.+++..+. .-+..++.+..|
T Consensus 19 ~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kE 98 (256)
T 3na7_A 19 EIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIE 98 (256)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 333334434444444444444444444444444444444444445555555554444444433221 124556667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 006833 394 AEAAKKEKELVTEETAKIKEEIQKTEAEIYSAEEKIETSMQELNAVKSSEALAFDNL 450 (629)
Q Consensus 394 ae~Ak~ea~~~~~E~~~~k~E~e~~ka~~~t~E~rL~aa~kE~EAakasE~lAla~i 450 (629)
.+.++.....+..++..+...++..+..+...+.++......+...++.=.-+++++
T Consensus 99 ie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~ 155 (256)
T 3na7_A 99 EDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNI 155 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777888888888888888888888887777777777666655444444443
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=94.91 E-value=2.8 Score=42.01 Aligned_cols=66 Identities=17% Similarity=0.236 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHHHHHH
Q 006833 303 LEAAKKELAAIKEEGFRFMASMDVIRNELRHVREETARLKKGEEKTELTVQNLNSKLLRAKAKLEA 368 (629)
Q Consensus 303 L~~AK~~L~~~~~E~~~l~~~vesLr~ELe~~K~el~~lke~e~~a~~~v~sL~~EL~k~kseLe~ 368 (629)
+..-...+..+-.++..+...+..|+..+...+..+..++.........|..+...+.+.+..|..
T Consensus 20 i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~ 85 (256)
T 3na7_A 20 IDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSE 85 (256)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333333333334444444444444444444444444444444444444444444444444444443
No 6
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=93.82 E-value=7.9 Score=51.68 Aligned_cols=83 Identities=24% Similarity=0.190 Sum_probs=51.6
Q ss_pred HHHHhhHHhhHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHhHhhhHHHHHHHHhh
Q 006833 479 EYLRGRAVGAEEL---ADKKVAAAQAWIEALKASEKEILMKMEMAHREIRHTRVEEEKEVFKSERTRSTKRRVERELRNW 555 (629)
Q Consensus 479 e~L~~ka~eaEe~---a~kkvaaA~aqve~akasE~e~l~kLe~~~~ei~~~k~ale~Al~raE~A~~aK~avE~ELRrw 555 (629)
.+|..+..+++.. +..+..++.+.+....+.=...-.+.+.++.|....+...+....+.++|+.==.++-+|--||
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW 2089 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRW 2089 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccH
Confidence 5666666554432 2233333333333333322222335566677777778888888889999998888899999999
Q ss_pred hhhhhc
Q 006833 556 RQNSER 561 (629)
Q Consensus 556 r~e~~q 561 (629)
......
T Consensus 2090 ~~~~~~ 2095 (3245)
T 3vkg_A 2090 EQQSEN 2095 (3245)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987653
No 7
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=93.66 E-value=10 Score=50.67 Aligned_cols=69 Identities=14% Similarity=0.213 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHHHHHHH
Q 006833 301 EELEAAKKELAAIKEEGFRFMASMDVIRNELRHVREETARLKKGEEKTELTVQNLNSKLLRAKAKLEAV 369 (629)
Q Consensus 301 ~eL~~AK~~L~~~~~E~~~l~~~vesLr~ELe~~K~el~~lke~e~~a~~~v~sL~~EL~k~kseLe~~ 369 (629)
..|..++..|..+.+.+..|+..++.+..|-+..+.++...+.+...|...|++|..|-.+=...+...
T Consensus 2028 ~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l 2096 (3245)
T 3vkg_A 2028 LKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENF 2096 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHH
Confidence 334444444444444444444444445555555556666666666677777777777766655554444
No 8
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=93.19 E-value=6.4 Score=38.00 Aligned_cols=47 Identities=17% Similarity=0.236 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----hhHhHHHHHHHHHHHHHHHHH
Q 006833 211 EKEANEFSASMEVAKEKLKDLTEEID----HCKELENKLAVTLYDVNFLHN 257 (629)
Q Consensus 211 e~~~~~~~~~le~ae~el~~Lk~el~----~~k~Le~kL~ets~~ie~Lq~ 257 (629)
+.++..|.....+....+..|..+|. ++++||..|.......+.=..
T Consensus 9 ~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~ 59 (189)
T 2v71_A 9 KEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNR 59 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788888888888888888874 888888877665554444333
No 9
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=90.03 E-value=3.3 Score=34.99 Aligned_cols=41 Identities=12% Similarity=0.191 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006833 52 DISRYKESRKAAESVKAQAESELSTARKTVKDLACRIEKTN 92 (629)
Q Consensus 52 el~k~Keql~~aE~~K~qal~ELe~akr~ieeL~~kLe~a~ 92 (629)
+|..++.|+..+-..|+++..|++.++-.+++++.+.+.-.
T Consensus 1 Ei~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~ 41 (86)
T 3swk_A 1 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEM 41 (86)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999997665
No 10
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=89.98 E-value=13 Score=34.88 Aligned_cols=104 Identities=18% Similarity=0.274 Sum_probs=85.7
Q ss_pred HHHHHHHHHhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006833 334 VREETARLKKGEEKTELTVQNLNSKLLRAKAKLEAVSAAEEKANGIAGNLAFTLEQLKTEAEAAKKEKELVTEETAKIKE 413 (629)
Q Consensus 334 ~K~el~~lke~e~~a~~~v~sL~~EL~k~kseLe~~~~~Eek~~~~~~~l~~~Leql~~Eae~Ak~ea~~~~~E~~~~k~ 413 (629)
+-..|.+..++...+.+.|..|+.+|.-+-..|..+...+.++......+-..+..|......|..-++.+...+.++-.
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk 105 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEK 105 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677778888888889999999999999999999888888887777777778888888777777777888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 006833 414 EIQKTEAEIYSAEEKIETSMQELN 437 (629)
Q Consensus 414 E~e~~ka~~~t~E~rL~aa~kE~E 437 (629)
+++...-.+.....+......+++
T Consensus 106 ~id~lEd~L~~~Kek~~~i~~eLd 129 (155)
T 2efr_A 106 SIDDLEDELYAQKLKYKAISEEMK 129 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888777777777777777776
No 11
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=86.06 E-value=18 Score=32.12 Aligned_cols=45 Identities=11% Similarity=0.184 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006833 48 MARRDISRYKESRKAAESVKAQAESELSTARKTVKDLACRIEKTN 92 (629)
Q Consensus 48 ~aq~el~k~Keql~~aE~~K~qal~ELe~akr~ieeL~~kLe~a~ 92 (629)
.-...|..++.|+..+-..|+++..+++.++..+++++.+.+.-.
T Consensus 17 ~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~ 61 (119)
T 3ol1_A 17 LYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEM 61 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 456778899999999999999999999999999999999887643
No 12
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=83.40 E-value=15 Score=44.29 Aligned_cols=61 Identities=20% Similarity=0.239 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHHHHHH
Q 006833 305 AAKKELAAIKEEGFRFMASMDVIRNELRHVREETARLKKGEEKTELTVQNLNSKLLRAKAKLEA 368 (629)
Q Consensus 305 ~AK~~L~~~~~E~~~l~~~vesLr~ELe~~K~el~~lke~e~~a~~~v~sL~~EL~k~kseLe~ 368 (629)
.++..+..+..++..+...+..+..|.+.....+..+++ .....|++|+.+..+++..+..
T Consensus 981 ~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~---~L~~kv~~L~~e~~~L~qq~~~ 1041 (1080)
T 2dfs_A 981 NATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKH---ETEQLVSELKEQNTLLKTEKEE 1041 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333444444443333333333333332 1124455555555555544443
No 13
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=83.07 E-value=22 Score=30.72 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006833 388 EQLKTEAEAAKKEKELVTEETAKIKE 413 (629)
Q Consensus 388 eql~~Eae~Ak~ea~~~~~E~~~~k~ 413 (629)
+++....-.|+++...+...+..++.
T Consensus 65 eEAN~MVa~ar~e~~~~e~kn~~L~~ 90 (97)
T 2eqb_B 65 DEANNMVADARKEKYAIEILNKRLTE 90 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555544444444444443
No 14
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=81.77 E-value=17 Score=32.21 Aligned_cols=62 Identities=15% Similarity=0.237 Sum_probs=47.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHHHHHH
Q 006833 297 KSVKEELEAAKKELAAIKEEGFRFMASMDVIRNELRHVREETARLKKGEEKTELTVQNLNSKLLRAKAKLEA 368 (629)
Q Consensus 297 ~~~~~eL~~AK~~L~~~~~E~~~l~~~vesLr~ELe~~K~el~~lke~e~~a~~~v~sL~~EL~k~kseLe~ 368 (629)
..+..+|.+|...|........+-..+|..|+.-|++.+..- + ..|+.|..|+..+..+|..
T Consensus 28 ~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~---q-------~~vqeLqgEI~~Lnq~Lq~ 89 (121)
T 3mq7_A 28 HLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQG---Q-------KKVEELEGEITTLNHKLQD 89 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-------HHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999888775 1 1355555555555554443
No 15
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=73.71 E-value=89 Score=34.18 Aligned_cols=43 Identities=23% Similarity=0.187 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHh
Q 006833 407 ETAKIKEEIQKTEAEIYSAEEKIETSMQELNAVKSSEALAFDNLKSLIEK 456 (629)
Q Consensus 407 E~~~~k~E~e~~ka~~~t~E~rL~aa~kE~EAakasE~lAla~ikaL~e~ 456 (629)
+...++.+.+..+..+.....++....+++... ..+|+.|.+.
T Consensus 538 ~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~-------~~~~~~l~~~ 580 (597)
T 3oja_B 538 ETEDLEQENIALEKQLDNKRAKQAELRQETSLK-------RQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHT
T ss_pred chhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 333334444444444444444444444443332 3466666543
No 16
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=71.77 E-value=48 Score=28.48 Aligned_cols=98 Identities=18% Similarity=0.177 Sum_probs=68.8
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHhhH
Q 006833 379 IAGNLAFTLEQLKTEAEAAKKEKELVTEETAKIKEEIQKTEAEIYSAEEKIETSMQELNAVKSSEALAFDNLKSLIEKTM 458 (629)
Q Consensus 379 ~~~~l~~~Leql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~~~t~E~rL~aa~kE~EAakasE~lAla~ikaL~e~~~ 458 (629)
.|+.+-..|+.++.+++.|.-.++.+...+..+.....+....+.....|++.+-.+++.+.. .+. .....|.+...
T Consensus 3 ~MdaIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee--~L~-ea~~kLee~ek 79 (101)
T 3u1c_A 3 HMDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLE--ELH-KSEDSLLFAEE 79 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH--HHH-HHHHHHHHHHH
Confidence 366677888899999999999999999999999999999999999999999988888886533 333 22233332211
Q ss_pred HhhhhccCCCCCccccHHhhHHHHhhHHhhHH
Q 006833 459 QARASASQNSSSITISNFEYEYLRGRAVGAEE 490 (629)
Q Consensus 459 ~~~~~~~~~~~~Itis~eEye~L~~ka~eaEe 490 (629)
..+-+-.+-..|++|++-.|+
T Consensus 80 -----------~~~~aE~ev~~L~RriqllEE 100 (101)
T 3u1c_A 80 -----------NAAKAESEVASLNRRIQLVEE 100 (101)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHT
T ss_pred -----------HHHHHHHHHHHHHHHHHHHcc
Confidence 112244466677887775543
No 17
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=68.69 E-value=85 Score=30.15 Aligned_cols=45 Identities=20% Similarity=0.353 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHH-HhhHhHHHHHHHHHHHHHHHHHHhhc
Q 006833 217 FSASMEVAKEKLKDLTEEI-DHCKELENKLAVTLYDVNFLHNELKS 261 (629)
Q Consensus 217 ~~~~le~ae~el~~Lk~el-~~~k~Le~kL~ets~~ie~Lq~El~~ 261 (629)
+-..|+++...++.-..-+ .+..|++++|..+.-.+..|..||..
T Consensus 110 ~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~E 155 (189)
T 2v71_A 110 YVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDE 155 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666555554 58889999999999999999999974
No 18
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=67.89 E-value=46 Score=36.51 Aligned_cols=46 Identities=17% Similarity=0.177 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006833 382 NLAFTLEQLKTEAEAAKKEKELVTEETAKIKEEIQKTEAEIYSAEE 427 (629)
Q Consensus 382 ~l~~~Leql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~~~t~E~ 427 (629)
.....++++..+.+.-++..+..+..+..+++|...++..+...+.
T Consensus 534 ~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 534 AKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555556666666666666665554443
No 19
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=65.79 E-value=30 Score=30.93 Aligned_cols=36 Identities=8% Similarity=0.209 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006833 381 GNLAFTLEQLKTEAEAAKKEKELVTEETAKIKEEIQ 416 (629)
Q Consensus 381 ~~l~~~Leql~~Eae~Ak~ea~~~~~E~~~~k~E~e 416 (629)
..|-..+-+|..|.+..+.....+..+...++.+.+
T Consensus 43 ~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~ 78 (120)
T 3i00_A 43 LQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELD 78 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444433333334444444333
No 20
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=64.32 E-value=19 Score=32.32 Aligned_cols=66 Identities=12% Similarity=0.189 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHHHHH
Q 006833 299 VKEELEAAKKELAAIKEEGFRFMASMDVIRNELRHVREETARLKKGEEKTELTVQNLNSKLLRAKAKLE 367 (629)
Q Consensus 299 ~~~eL~~AK~~L~~~~~E~~~l~~~vesLr~ELe~~K~el~~lke~e~~a~~~v~sL~~EL~k~kseLe 367 (629)
.+.++...+..++.+..++.+++..-.+|-.-|......... ........|..|+.+|..++.+++
T Consensus 34 ~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~---~l~~~q~~i~~lE~eL~~~r~e~~ 99 (129)
T 3tnu_B 34 TKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGEL---ALKDARNKLAELEEALQKAKQDMA 99 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHH
Confidence 444444444444444444444444444444444333222211 112223355566666666655544
No 21
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=62.71 E-value=57 Score=26.75 Aligned_cols=63 Identities=19% Similarity=0.144 Sum_probs=51.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhHH
Q 006833 40 SSRARELHMARRDISRYKESRKAAESVKAQAESELSTARKTVKDLACRIEKTNHQAIPSMRYV 102 (629)
Q Consensus 40 ~~~e~eL~~aq~el~k~Keql~~aE~~K~qal~ELe~akr~ieeL~~kLe~a~~~~~~~~~el 102 (629)
..+..+++.++..+..+..++..++....++..|+...++-+.-|...|+.++..-..+...|
T Consensus 9 ~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kL 71 (81)
T 1ic2_A 9 QMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678889999999999999999999999999999999999999999999885533333333
No 22
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=61.16 E-value=1.2e+02 Score=36.50 Aligned_cols=17 Identities=18% Similarity=0.386 Sum_probs=7.5
Q ss_pred hHhhHHHHHHHHHHHHH
Q 006833 351 TVQNLNSKLLRAKAKLE 367 (629)
Q Consensus 351 ~v~sL~~EL~k~kseLe 367 (629)
.|.+|+.++..++.+++
T Consensus 985 ~v~~L~~e~~~l~~~~~ 1001 (1080)
T 2dfs_A 985 RVLSLQEEIAKLRKELH 1001 (1080)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 23
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=60.45 E-value=1.1e+02 Score=28.74 Aligned_cols=16 Identities=31% Similarity=0.532 Sum_probs=9.4
Q ss_pred hhHHHHHHHHHHHHHH
Q 006833 173 SSVEGLRKEIEEVNEE 188 (629)
Q Consensus 173 ~~~~~l~kei~~~~e~ 188 (629)
.++..|.+.|.++|+-
T Consensus 6 eKi~~LekQL~E~n~k 21 (168)
T 3o0z_A 6 EKLSQLQKQLEEANDL 21 (168)
T ss_dssp ----CTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5667788888888844
No 24
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=60.10 E-value=18 Score=32.48 Aligned_cols=18 Identities=11% Similarity=0.333 Sum_probs=9.5
Q ss_pred hhHhhHHHHHHHHHHHHH
Q 006833 350 LTVQNLNSKLLRAKAKLE 367 (629)
Q Consensus 350 ~~v~sL~~EL~k~kseLe 367 (629)
..|..|+.+|..++.+++
T Consensus 84 ~~i~~lE~eL~~~r~em~ 101 (131)
T 3tnu_A 84 EMIGSVEEQLAQLRCEME 101 (131)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555555555544
No 25
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=53.54 E-value=73 Score=28.98 Aligned_cols=31 Identities=16% Similarity=0.150 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006833 316 EGFRFMASMDVIRNELRHVREETARLKKGEE 346 (629)
Q Consensus 316 E~~~l~~~vesLr~ELe~~K~el~~lke~e~ 346 (629)
|.+.++.-++.|..+++....++..|+....
T Consensus 69 El~k~~~~~~~L~~~l~~~~kE~~~lK~el~ 99 (138)
T 3hnw_A 69 DYFKAKKMADSLSLDIENKDKEIYDLKHELI 99 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444443333
No 26
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=51.27 E-value=80 Score=28.77 Aligned_cols=37 Identities=11% Similarity=0.208 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006833 388 EQLKTEAEAAKKEKELVTEETAKIKEEIQKTEAEIYS 424 (629)
Q Consensus 388 eql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~~~t 424 (629)
+++....-.|+++...+...+..+...+..+..-|..
T Consensus 85 eEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll~~ 121 (135)
T 2e7s_A 85 DEANNLVADARMEKYAIEILNKRLTEQLREKDMLLDT 121 (135)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555444444444444444444433333
No 27
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=47.91 E-value=1.2e+02 Score=25.24 Aligned_cols=60 Identities=15% Similarity=0.235 Sum_probs=41.7
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006833 379 IAGNLAFTLEQLKTEAEAAKKEKELVTEETAKIKEEIQKTEAEIYSAEEKIETSMQELNA 438 (629)
Q Consensus 379 ~~~~l~~~Leql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~~~t~E~rL~aa~kE~EA 438 (629)
.+.++...++.++.-.+.--.....+..++.-++..++.+-..-...|.++.....|+.-
T Consensus 22 e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~f 81 (86)
T 3swk_A 22 ERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAF 81 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666443333333346777888888888888888888888888888887754
No 28
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=45.35 E-value=1.8e+02 Score=26.60 Aligned_cols=61 Identities=16% Similarity=0.181 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHhHhhhHHHHHHHHh
Q 006833 494 KKVAAAQAWIEALKASEKEILMKMEMAHREIRHTRVEEEKEVFKSERTRSTKRRVERELRN 554 (629)
Q Consensus 494 kkvaaA~aqve~akasE~e~l~kLe~~~~ei~~~k~ale~Al~raE~A~~aK~avE~ELRr 554 (629)
.|+..-..|+..|+..=.++-.|.+++.+-+.-.-..|+.|-.|++.+...-..+|.+|+-
T Consensus 52 Er~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~ 112 (147)
T 2b9c_A 52 EKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKT 112 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566677778877778899999999999999999999999999999999999999984
No 29
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=44.97 E-value=1.3e+02 Score=24.62 Aligned_cols=57 Identities=19% Similarity=0.291 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006833 383 LAFTLEQLKTEAEAAKKEKELVTEETAKIKEEIQKTEAEIYSAEEKIETSMQELNAV 439 (629)
Q Consensus 383 l~~~Leql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~~~t~E~rL~aa~kE~EAa 439 (629)
|...|+++..+.+.|.-.+..+...+..+.....+....+.....+++....+++.+
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ 60 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKY 60 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555555555555555555555555533
No 30
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=43.88 E-value=1.1e+02 Score=24.74 Aligned_cols=53 Identities=19% Similarity=0.299 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhHHHHHH
Q 006833 308 KELAAIKEEGFRFMASMDVIRNELRHVREETARLKKGEEKTELTVQNLNSKLL 360 (629)
Q Consensus 308 ~~L~~~~~E~~~l~~~vesLr~ELe~~K~el~~lke~e~~a~~~v~sL~~EL~ 360 (629)
..|..-.+|+..|...+.|||..|.+-..-...|.....-...+++.|+..++
T Consensus 10 ~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~k~~~ 62 (74)
T 2q6q_A 10 FKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLEKKLS 62 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcc
Confidence 45666778899999999999999999887777777666655666666665543
No 31
>3hrn_A Transient receptor potential (Trp) channel subfamily P member 2 (TRPP2); coiled coil, helix bundle, trimer, calcium, disease mutation, glycoprotein; 1.90A {Homo sapiens} PDB: 3hro_A
Probab=40.53 E-value=1.1e+02 Score=24.37 Aligned_cols=39 Identities=26% Similarity=0.390 Sum_probs=28.4
Q ss_pred ccHHhhHHHHhhHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006833 473 ISNFEYEYLRGRAVGAEELADKKVAAAQAWIEALKASEKEILMKMEMAHR 522 (629)
Q Consensus 473 is~eEye~L~~ka~eaEe~a~kkvaaA~aqve~akasE~e~l~kLe~~~~ 522 (629)
+|.+||+.|++|+-.-|-. +...+.+|++ ++.||+...+
T Consensus 3 VS~EEF~~L~rRVlqLE~s----l~gI~SqIDa-------V~~KL~~~Er 41 (64)
T 3hrn_A 3 VSYEEFQVLVRRVDRMEHS----IGSIVSKIDA-------VIVKLEIMER 41 (64)
T ss_dssp CCHHHHHHHHHHHHHHHHH----HHHHHHHHHH-------HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH----HHHHHHHHHH-------HHHHHHHHHH
Confidence 5889999999999866654 4456667776 5666666555
No 32
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=39.91 E-value=1.8e+02 Score=24.85 Aligned_cols=62 Identities=11% Similarity=0.125 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHHHHHH
Q 006833 307 KKELAAIKEEGFRFMASMDVIRNELRHVREETARLKKGEEKTELTVQNLNSKLLRAKAKLEA 368 (629)
Q Consensus 307 K~~L~~~~~E~~~l~~~vesLr~ELe~~K~el~~lke~e~~a~~~v~sL~~EL~k~kseLe~ 368 (629)
|+.++.++.+.-....-++.+...+.........+.+......-.++.|+.+|.++...|..
T Consensus 8 KkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~e 69 (101)
T 3u1c_A 8 KKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHK 69 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444443333444444444443333333333333333333444555555554444443
No 33
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=39.67 E-value=75 Score=25.92 Aligned_cols=34 Identities=26% Similarity=0.292 Sum_probs=27.1
Q ss_pred HHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHhhc
Q 006833 228 LKDLTEEIDHCKELENKLAVTLYDVNFLHNELKS 261 (629)
Q Consensus 228 l~~Lk~el~~~k~Le~kL~ets~~ie~Lq~El~~ 261 (629)
++.|+..-...++|+..|.+....|..|+.+|-.
T Consensus 32 ~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 32 IEELRQRDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555567889999999999999999999954
No 34
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=39.43 E-value=54 Score=27.83 Aligned_cols=39 Identities=13% Similarity=0.202 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006833 50 RRDISRYKESRKAAESVKAQAESELSTARKTVKDLACRI 88 (629)
Q Consensus 50 q~el~k~Keql~~aE~~K~qal~ELe~akr~ieeL~~kL 88 (629)
..+|..++.++..+-..|+++..|++.....+++++.+|
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~KL 93 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKL 93 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 456666666777777777777777777666666666554
No 35
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=38.42 E-value=2.2e+02 Score=25.54 Aligned_cols=78 Identities=17% Similarity=0.263 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhchhhhhhhhhcCCCcccccccccccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 006833 240 ELENKLAVTLYDVNFLHNELKSVKDKDKLVQGNDSLKGTHSIYQSGEELEGSPLLPSKSVKEELEAAKKELAAIKEEGFR 319 (629)
Q Consensus 240 ~Le~kL~ets~~ie~Lq~El~~ak~~e~~~~~~~s~~~~~~~~~~~~~~e~~~~~~~~~~~~eL~~AK~~L~~~~~E~~~ 319 (629)
.|+.+.++....|..|...++..+..++. ...-. ... ..+..+|+..+.+|+.+ ..
T Consensus 10 ~l~~KvAElekkv~~lek~lk~~~e~d~e-----------------~y~ke-~~~--~~~qsele~k~aeLe~l----ee 65 (125)
T 2pms_C 10 APQAKIAELENQVHRLEQELKEIDESESE-----------------DYAKE-GFR--APLQSKLDAKKAKLSKL----EE 65 (125)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTTTCC--------------------------------CHHHHHHHHHHHHHHHH----HH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcchhhhh-----------------HHHHH-HHh--HHHHHHHHHHHHHHHHH----HH
Confidence 67888888888888888888765544321 00000 001 23678888888888877 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 006833 320 FMASMDVIRNELRHVREETARL 341 (629)
Q Consensus 320 l~~~vesLr~ELe~~K~el~~l 341 (629)
|...++.|..++.....++..+
T Consensus 66 L~~ki~eL~~kvA~le~e~~~~ 87 (125)
T 2pms_C 66 LSDKIDELDAEIAKLEDQLKAA 87 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHhHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555544443
No 36
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=38.20 E-value=2.1e+02 Score=25.17 Aligned_cols=47 Identities=19% Similarity=0.356 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HhhHhHHHHHHHHHHHHHHHHHHhhc
Q 006833 215 NEFSASMEVAKEKLKDLTEEI-DHCKELENKLAVTLYDVNFLHNELKS 261 (629)
Q Consensus 215 ~~~~~~le~ae~el~~Lk~el-~~~k~Le~kL~ets~~ie~Lq~El~~ 261 (629)
..|-..|++....|+.-..-. ++..|+++||..+.--...|..||..
T Consensus 55 ~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~E 102 (111)
T 2v66_B 55 HKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDE 102 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777665555 58999999999999999999999963
No 37
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=37.58 E-value=2.7e+02 Score=26.24 Aligned_cols=102 Identities=17% Similarity=0.237 Sum_probs=55.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHh
Q 006833 297 KSVKEELEAAKKELAAIKEEGFRFMASMDVIRNELRHVREETARLKKGEEKTELTVQNLNSKLLRAKAKLEAVSAAEEKA 376 (629)
Q Consensus 297 ~~~~~eL~~AK~~L~~~~~E~~~l~~~vesLr~ELe~~K~el~~lke~e~~a~~~v~sL~~EL~k~kseLe~~~~~Eek~ 376 (629)
..+..+|+.+...|..-.+-...++....-+..-+...-..+..|+.+.......-..|+.++..+.+.|+.-+..-...
T Consensus 9 ~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~ 88 (168)
T 3o0z_A 9 SQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHD 88 (168)
T ss_dssp -CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667788777777766666666666666666666566666666666666555555555555555555555433322222
Q ss_pred hhhHhhHHHHHHHHHHHHHHHH
Q 006833 377 NGIAGNLAFTLEQLKTEAEAAK 398 (629)
Q Consensus 377 ~~~~~~l~~~Leql~~Eae~Ak 398 (629)
.+.+.+|..-++-|..|.+..+
T Consensus 89 se~~~elq~ri~~L~~El~~~k 110 (168)
T 3o0z_A 89 SEMIGDLQARITSLQEEVKHLK 110 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 2233344444444444444333
No 38
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=37.05 E-value=49 Score=36.99 Aligned_cols=45 Identities=11% Similarity=0.247 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006833 49 ARRDISRYKESRKAAESVKAQAESELSTARKTVKDLACRIEKTNH 93 (629)
Q Consensus 49 aq~el~k~Keql~~aE~~K~qal~ELe~akr~ieeL~~kLe~a~~ 93 (629)
+.++..++.+++...+..-.++..+|.+...++..|..++..++.
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~ 377 (575)
T 2i1j_A 333 AEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQA 377 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 444455555566666666666666666666666666666555553
No 39
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=36.81 E-value=2e+02 Score=24.60 Aligned_cols=67 Identities=9% Similarity=0.200 Sum_probs=53.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHHHHHHHH
Q 006833 297 KSVKEELEAAKKELAAIKEEGFRFMASMDVIRNELRHVREETARLKKGEEKTELTVQNLNSKLLRAKAKLEAVS 370 (629)
Q Consensus 297 ~~~~~eL~~AK~~L~~~~~E~~~l~~~vesLr~ELe~~K~el~~lke~e~~a~~~v~sL~~EL~k~kseLe~~~ 370 (629)
..+..+|.+|...|.........-...|..|+.-|++.|..--.-+ ..|..|..|+..+...|..+.
T Consensus 21 ~lLq~qLT~Aq~~l~~~eaQAaTCNqTV~tL~~SL~kekaq~q~qq-------~~v~elqgEI~~Lnq~Lqda~ 87 (99)
T 3ni0_A 21 HLLQRQLTRTQDSLLQAETQANSCNLTVVTLQESLEKKVSQALEQQ-------ARIKELENEVTKLNQELENLR 87 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999998887632222 246777778777777777654
No 40
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=35.05 E-value=2.4e+02 Score=24.96 Aligned_cols=45 Identities=29% Similarity=0.378 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH----hhHhHHHHHHHHHHHHHHHHHHhhc
Q 006833 217 FSASMEVAKEKLKDLTEEID----HCKELENKLAVTLYDVNFLHNELKS 261 (629)
Q Consensus 217 ~~~~le~ae~el~~Lk~el~----~~k~Le~kL~ets~~ie~Lq~El~~ 261 (629)
+..++...+.++..|+..+. ..++|+.+..........|+.+|..
T Consensus 11 ~e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~ 59 (129)
T 2fxo_A 11 REKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQA 59 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677777777777774 5567777777777777777766643
No 41
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=35.02 E-value=30 Score=23.04 Aligned_cols=21 Identities=33% Similarity=0.678 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 006833 133 LESVKQELSKLKLDMASVLEE 153 (629)
Q Consensus 133 L~svk~EL~kl~~e~~~~~ee 153 (629)
|.+.|.||..|++-.|++++.
T Consensus 1 lQ~IkkELtQIK~kvDsLLe~ 21 (28)
T 1txp_A 1 IQAIKKELTQIKQKVDSLLEN 21 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999998864
No 42
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=34.78 E-value=2.3e+02 Score=24.77 Aligned_cols=60 Identities=17% Similarity=0.281 Sum_probs=37.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006833 381 GNLAFTLEQLKTEAEAAKKEKELVTEETAKIKEEIQKTEAEIYSAEEKIETSMQELNAVK 440 (629)
Q Consensus 381 ~~l~~~Leql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~~~t~E~rL~aa~kE~EAak 440 (629)
.++...++.++.-.+.--.....+..++..++..++.+-..-...|.+++....|+.--|
T Consensus 44 dn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLK 103 (119)
T 3ol1_A 44 DNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLK 103 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444443322222233455667777888888777777788888888887776654
No 43
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=33.60 E-value=2.6e+02 Score=30.94 Aligned_cols=95 Identities=12% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHhhchhhhhhhhhcCCCcccccccccccccccCCCCCCchhHHHHHHHHHH
Q 006833 229 KDLTEEIDHCKELENKLAVTLYDVNFLHNELKSVKDKDKLVQGNDSLKGTHSIYQSGEELEGSPLLPSKSVKEELEAAKK 308 (629)
Q Consensus 229 ~~Lk~el~~~k~Le~kL~ets~~ie~Lq~El~~ak~~e~~~~~~~s~~~~~~~~~~~~~~e~~~~~~~~~~~~eL~~AK~ 308 (629)
++|++-|...++.=..|..++..+..+=..+. ..+...+.++.
T Consensus 60 rDltkrINELKnqLEdlsKnsKdseqy~k~~~------------------------------------E~Lr~rq~q~~- 102 (562)
T 3ghg_A 60 QDFTNRINKLKNSLFEYQKNNKDSHSLTTNIM------------------------------------EILRGDFSSAN- 102 (562)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH------------------------------------HTTSSHHHHHH-
T ss_pred CcHHHHHHHHHHHHHHHHhhchhHHHHHHHHH------------------------------------HHHHHHHHhhh-
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhHHHHHH
Q 006833 309 ELAAIKEEGF-RFMASMDVIRNELRHVREETARLKKGEEKTELTVQNLNSKLL 360 (629)
Q Consensus 309 ~L~~~~~E~~-~l~~~vesLr~ELe~~K~el~~lke~e~~a~~~v~sL~~EL~ 360 (629)
.++.+..++. .|+.-+..|+.++......+..|+..+..--+.|+.|++.+.
T Consensus 103 dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 103 NRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 44
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=31.92 E-value=1.3e+02 Score=25.02 Aligned_cols=45 Identities=11% Similarity=0.307 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHHHHHHH
Q 006833 325 DVIRNELRHVREETARLKKGEEKTELTVQNLNSKLLRAKAKLEAV 369 (629)
Q Consensus 325 esLr~ELe~~K~el~~lke~e~~a~~~v~sL~~EL~k~kseLe~~ 369 (629)
.++..||.+++..+-.+.-+...+...-..|..++.+.+.+++.+
T Consensus 27 Q~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 27 QSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777666666666666677777777766666554
No 45
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=31.73 E-value=2.5e+02 Score=24.13 Aligned_cols=41 Identities=15% Similarity=0.110 Sum_probs=16.2
Q ss_pred hHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006833 382 NLAFTLEQLK-TEAEAAKKEKELVTEETAKIKEEIQKTEAEI 422 (629)
Q Consensus 382 ~l~~~Leql~-~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~~ 422 (629)
.+...|+.|+ +=.++|..+.-.++.+...+..-.++.+..|
T Consensus 51 ~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL 92 (97)
T 2eqb_B 51 KLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQL 92 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444 2233444443344433333333333333333
No 46
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=31.03 E-value=2.7e+02 Score=24.44 Aligned_cols=95 Identities=16% Similarity=0.212 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhhhcchhhHHHHHHhhhchhhhhhhhh
Q 006833 44 RELHMARRDISRYKESRKAAESVKAQAESELS----TARKTVKDLACRIEKTNHQAIPSMRYVERLEKSSGIEENVLAER 119 (629)
Q Consensus 44 ~eL~~aq~el~k~Keql~~aE~~K~qal~ELe----~akr~ieeL~~kLe~a~~~~~~~~~ele~~r~~e~~~~~~~~~~ 119 (629)
.+.+++|.++..+++++...-..|......+. ..+..|.+|..++..+. +.|..++..- ....
T Consensus 6 ~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE-------~~L~~Lqq~f------sq~q 72 (112)
T 1x79_B 6 DQVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASE-------ILLEELQQGL------SQAK 72 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH------HHHH
Confidence 56778888888888888877777777777664 35567777777776665 2333333110 1111
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006833 120 SRESHRYAEVMRELESVKQELSKLKLDMASVL 151 (629)
Q Consensus 120 ~~e~~qya~~~~EL~svk~EL~kl~~e~~~~~ 151 (629)
.....+.+........|..||.+|+.|-+.+.
T Consensus 73 ~~vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~L~ 104 (112)
T 1x79_B 73 RDVQEQMAVLMQSREQVSEELVRLQKDNDSLQ 104 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHTC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccchh
Confidence 22246777777788889999999998887654
No 47
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=30.82 E-value=2.4e+02 Score=23.80 Aligned_cols=9 Identities=33% Similarity=0.501 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 006833 421 EIYSAEEKI 429 (629)
Q Consensus 421 ~~~t~E~rL 429 (629)
.+...--|+
T Consensus 87 evasLnRri 95 (101)
T 3u59_A 87 EVASLNRRI 95 (101)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 48
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=29.83 E-value=2.4e+02 Score=23.41 Aligned_cols=51 Identities=12% Similarity=0.262 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006833 386 TLEQLKTEAEAAKKEKELVTEETAKIKEEIQKTEAEIYSAEEKIETSMQEL 436 (629)
Q Consensus 386 ~Leql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~~~t~E~rL~aa~kE~ 436 (629)
.++.|+.+......+...++.....+..+.++.+.....-..||.+.+.-+
T Consensus 28 EieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~ 78 (81)
T 2jee_A 28 EIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455555555555555555555666667777777778888888887766543
No 49
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=29.18 E-value=2.5e+02 Score=23.33 Aligned_cols=40 Identities=23% Similarity=0.454 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHhh
Q 006833 211 EKEANEFSASMEVAKEKLKDLTEEIDHCKELENKLAVTLYDVNFLHNELK 260 (629)
Q Consensus 211 e~~~~~~~~~le~ae~el~~Lk~el~~~k~Le~kL~ets~~ie~Lq~El~ 260 (629)
+.++..|+..|..+..+|.. |...|....+.|..|+.+|.
T Consensus 39 EnErlQyEkKLKsTK~El~~----------Lq~qLe~kd~ei~rL~~~l~ 78 (81)
T 3qh9_A 39 ENERNQYEWKLKATKAEVAQ----------LQEQVALKDAEIERLHSQLS 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhHHHHHH----------HHHHHHhhHHHHHHHHHHHh
Confidence 44556688888888888884 44456666778888888774
No 50
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=29.05 E-value=3e+02 Score=24.32 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006833 299 VKEELEAAKKELAAIKEE 316 (629)
Q Consensus 299 ~~~eL~~AK~~L~~~~~E 316 (629)
+..+++.-+.+|+.++.|
T Consensus 20 Lkreie~lk~ele~l~~E 37 (120)
T 3i00_A 20 LYREISGLKAQLENMKTE 37 (120)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444444
No 51
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=28.49 E-value=3.4e+02 Score=24.65 Aligned_cols=64 Identities=16% Similarity=0.152 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHHHH
Q 006833 303 LEAAKKELAAIKEEGFR-FMASMDVIRNELRHVREETARLKKGEEKTELTVQNLNSKLLRAKAKL 366 (629)
Q Consensus 303 L~~AK~~L~~~~~E~~~-l~~~vesLr~ELe~~K~el~~lke~e~~a~~~v~sL~~EL~k~kseL 366 (629)
+.....+|+.+..-+|. ....|..-+.+-..+......|+.........+.+|+..|.-++.-+
T Consensus 69 ~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~LK~v~ 133 (135)
T 2e7s_A 69 ADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDMLLDTLTLQLKNLKKVM 133 (135)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444455555544442 23344445777788888888899888888888888888877766543
No 52
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=26.18 E-value=3e+02 Score=23.26 Aligned_cols=12 Identities=0% Similarity=0.130 Sum_probs=4.9
Q ss_pred hHhhHHHHHHHH
Q 006833 351 TVQNLNSKLLRA 362 (629)
Q Consensus 351 ~v~sL~~EL~k~ 362 (629)
.++.|+.++..+
T Consensus 52 Kiq~lE~eld~~ 63 (101)
T 3u59_A 52 KLKGTEDEVEKY 63 (101)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333444444443
No 53
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=23.59 E-value=3.7e+02 Score=23.52 Aligned_cols=84 Identities=19% Similarity=0.254 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHH
Q 006833 319 RFMASMDVIRNELRHVREETARLKKGEEKTELTVQNLNSKLLRAKAKLEAVSAAEEKANGIAGNLAFTLEQLKTEAEAAK 398 (629)
Q Consensus 319 ~l~~~vesLr~ELe~~K~el~~lke~e~~a~~~v~sL~~EL~k~kseLe~~~~~Eek~~~~~~~l~~~Leql~~Eae~Ak 398 (629)
.|+.-+..|..|++..|.-+...+ ..+.+.++.|..+|..++..-..+. .-...|+|.....+.+.
T Consensus 7 dL~~~~~~L~~E~e~~k~K~~~~~---~e~~~~~~~Lq~El~~lr~~~~~l~-----------~~iReLEq~NDDLER~~ 72 (111)
T 2v66_B 7 DLQADNQRLKYEVEALKEKLEHQY---AQSYKQVSVLEDDLSQTRAIKEQLH-----------KYVRELEQANDDLERAK 72 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHhchHHHHHH
Confidence 445555556666665555554443 3445667778887777655533321 12355677777777555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006833 399 KEKELVTEETAKIKEEIQKTEAEIYSAEEKIETSM 433 (629)
Q Consensus 399 ~ea~~~~~E~~~~k~E~e~~ka~~~t~E~rL~aa~ 433 (629)
+. +-..+.+.|.++-.|.
T Consensus 73 R~-----------------t~~SLeD~E~k~n~ai 90 (111)
T 2v66_B 73 RA-----------------TIVSLEDFEQRLNQAI 90 (111)
T ss_dssp HH-----------------HHHHHHHHHHHHHHHH
T ss_pred HH-----------------HHhhHHHHHHHHHHHH
Confidence 43 4456677777765443
No 54
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=21.58 E-value=4.8e+02 Score=24.07 Aligned_cols=66 Identities=18% Similarity=0.186 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhHHHHHHHH
Q 006833 297 KSVKEELEAAKKELAAIKEEGFRFMASMDVIRNELRHVREETARLKKGEEKTELTVQNLNSKLLRA 362 (629)
Q Consensus 297 ~~~~~eL~~AK~~L~~~~~E~~~l~~~vesLr~ELe~~K~el~~lke~e~~a~~~v~sL~~EL~k~ 362 (629)
..++..|..|-.--+.+--.+..|...++.|-.+|...|.....+.+..-.+...+.++.+.+..+
T Consensus 80 k~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~ 145 (155)
T 2efr_A 80 KVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHL 145 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHH
Confidence 446666777666666666667777777777777777777777777665554444444444444443
No 55
>3n27_A Fusion glycoprotein F0, linker, fusion glycoprote; fusion protein, chimera protein, fusion inhibitor, antivirus viral protein; HET: CIT; 1.80A {Hendravirus}
Probab=20.51 E-value=3.2e+02 Score=22.57 Aligned_cols=27 Identities=30% Similarity=0.150 Sum_probs=21.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006833 297 KSVKEELEAAKKELAAIKEEGFRFMAS 323 (629)
Q Consensus 297 ~~~~~eL~~AK~~L~~~~~E~~~l~~~ 323 (629)
-.+.++|..|+-.|++.+.++...+.-
T Consensus 49 ~dis~~l~~a~~~l~~sk~~~~~~~~~ 75 (80)
T 3n27_A 49 IDISIELNKAKSDLEESKEWIRRSNQK 75 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhHhHHHhhHHHHHHHHHHHHHH
Confidence 368899999999999988876655443
No 56
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=20.02 E-value=7.8e+02 Score=25.87 Aligned_cols=45 Identities=13% Similarity=0.210 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006833 389 QLKTEAEAAKKEKELVTEETAKIKEEIQKTEAEIYSAEEKIETSM 433 (629)
Q Consensus 389 ql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~~~t~E~rL~aa~ 433 (629)
++..+.+....+...++++..+++.++++....+..+..+++.+.
T Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (487)
T 3oja_A 432 NAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELV 476 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHH
Confidence 344455555555566666777777777777777777777776544
Done!