BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006834
(629 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2AVN|A Chain A, Crystal Structure Of A UbiquinoneMENAQUINONE BIOSYNTHESIS
Methyltransferase-Related Protein (Tm1389) From
Thermotoga Maritima Msb8 At 2.35 A Resolution
pdb|2AVN|B Chain B, Crystal Structure Of A UbiquinoneMENAQUINONE BIOSYNTHESIS
Methyltransferase-Related Protein (Tm1389) From
Thermotoga Maritima Msb8 At 2.35 A Resolution
Length = 260
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Query: 226 AVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPAR 285
+D G G W +L +R + D + ++ A E+GV ++ ++ LP+P+
Sbjct: 58 VLDLGGGTGKWSLFLQERGFEVVLV---DPSKEXLEVAREKGVKNVVEA-KAEDLPFPSG 113
Query: 286 AFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWI 321
AF+ G ++ + E+ RVL P G I
Sbjct: 114 AFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLI 149
>pdb|3SM3|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferases
Q8puk2_metma From Methanosarcina Mazei. Northeast
Structural Genomics Consortium Target Mar262
Length = 235
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 64/157 (40%), Gaps = 20/157 (12%)
Query: 227 VDTGCG-------VASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKR 279
+D GCG +AS G + DI + + +T + G A V ++
Sbjct: 35 LDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASS 94
Query: 280 LPYPARAFDMAHCSGCL--IPWYMYDGLYLLEVDRVLRPGGYWILSGPPIHW------KK 331
L + +FD A L +P + EV RVL+PG Y L +W K+
Sbjct: 95 LSFHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKR 154
Query: 332 YWRGWERTKED---LKQEQDT--IEDIAKRLCWKKLI 363
Y + TKE+ L ++ +T E IA K+L+
Sbjct: 155 YLHDFPITKEEGSFLARDPETGETEFIAHHFTEKELV 191
>pdb|4B0I|A Chain A, Crystal Structure Of 3-hydroxydecanoyl-acyl Carrier
Protein Dehydratase (faba) Mutant (h70n) From
Pseudomonas Aeruginosa In Complex With
3-hydroxydecanoyl-n-acetyl Cysteamine
pdb|4B0I|B Chain B, Crystal Structure Of 3-hydroxydecanoyl-acyl Carrier
Protein Dehydratase (faba) Mutant (h70n) From
Pseudomonas Aeruginosa In Complex With
3-hydroxydecanoyl-n-acetyl Cysteamine
pdb|4B0I|C Chain C, Crystal Structure Of 3-hydroxydecanoyl-acyl Carrier
Protein Dehydratase (faba) Mutant (h70n) From
Pseudomonas Aeruginosa In Complex With
3-hydroxydecanoyl-n-acetyl Cysteamine
pdb|4B0I|D Chain D, Crystal Structure Of 3-hydroxydecanoyl-acyl Carrier
Protein Dehydratase (faba) Mutant (h70n) From
Pseudomonas Aeruginosa In Complex With
3-hydroxydecanoyl-n-acetyl Cysteamine
pdb|4B0I|E Chain E, Crystal Structure Of 3-hydroxydecanoyl-acyl Carrier
Protein Dehydratase (faba) Mutant (h70n) From
Pseudomonas Aeruginosa In Complex With
3-hydroxydecanoyl-n-acetyl Cysteamine
Length = 171
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 35/93 (37%), Gaps = 10/93 (10%)
Query: 440 RISSGSLSGITAEKLREDNELWKDRMTYYKKIDGLFHKGRYRNVMDMNAYLGGFAAAMSK 499
R S G L G +L N L DR+ + + G + KG +D+N L FA
Sbjct: 14 RCSRGELFGPGNAQLPAPNMLMIDRIVHISDVGGKYGKGELVAELDINPDLWFFACNFEG 73
Query: 500 YPVWVMNVVPFHSNPDTLGAIYERGLIGTYQDW 532
PV P LG L+G Y W
Sbjct: 74 DPVM----------PGCLGLDAMWQLVGFYLGW 96
>pdb|4B8U|A Chain A, Crystal Structure Of 3-hydroxydecanoyl-acyl Carrier
Protein Dehydratase (faba) From Pseudomonas Aeruginosa
In Complex With
N-isobutyl-2-(5-(2-thienyl)-1,
2-oxazol-3-yl-)methoxy)acetamide
pdb|4B8U|B Chain B, Crystal Structure Of 3-hydroxydecanoyl-acyl Carrier
Protein Dehydratase (faba) From Pseudomonas Aeruginosa
In Complex With
N-isobutyl-2-(5-(2-thienyl)-1,
2-oxazol-3-yl-)methoxy)acetamide
pdb|4B8U|C Chain C, Crystal Structure Of 3-hydroxydecanoyl-acyl Carrier
Protein Dehydratase (faba) From Pseudomonas Aeruginosa
In Complex With
N-isobutyl-2-(5-(2-thienyl)-1,
2-oxazol-3-yl-)methoxy)acetamide
pdb|4B8U|D Chain D, Crystal Structure Of 3-hydroxydecanoyl-acyl Carrier
Protein Dehydratase (faba) From Pseudomonas Aeruginosa
In Complex With
N-isobutyl-2-(5-(2-thienyl)-1,
2-oxazol-3-yl-)methoxy)acetamide
pdb|4B8U|E Chain E, Crystal Structure Of 3-hydroxydecanoyl-acyl Carrier
Protein Dehydratase (faba) From Pseudomonas Aeruginosa
In Complex With
N-isobutyl-2-(5-(2-thienyl)-1,
2-oxazol-3-yl-)methoxy)acetamide
pdb|4B0B|A Chain A, Crystal Structure Of 3-hydroxydecanoyl-acyl Carrier
Protein Dehydratase (faba) From Pseudomonas Aeruginosa
In Complex With 3-(pyridin-2-yloxy)aniline
pdb|4B0B|B Chain B, Crystal Structure Of 3-hydroxydecanoyl-acyl Carrier
Protein Dehydratase (faba) From Pseudomonas Aeruginosa
In Complex With 3-(pyridin-2-yloxy)aniline
pdb|4B0C|A Chain A, Crystal Structure Of 3-hydroxydecanoyl-acyl Carrier
Protein Dehydratase (faba) From Pseudomonas Aeruginosa
In Complex With 3-(pentylthio)-4h-1,2,4-triazole
pdb|4B0C|B Chain B, Crystal Structure Of 3-hydroxydecanoyl-acyl Carrier
Protein Dehydratase (faba) From Pseudomonas Aeruginosa
In Complex With 3-(pentylthio)-4h-1,2,4-triazole
pdb|4B0C|C Chain C, Crystal Structure Of 3-hydroxydecanoyl-acyl Carrier
Protein Dehydratase (faba) From Pseudomonas Aeruginosa
In Complex With 3-(pentylthio)-4h-1,2,4-triazole
pdb|4B0C|D Chain D, Crystal Structure Of 3-hydroxydecanoyl-acyl Carrier
Protein Dehydratase (faba) From Pseudomonas Aeruginosa
In Complex With 3-(pentylthio)-4h-1,2,4-triazole
pdb|4B0C|E Chain E, Crystal Structure Of 3-hydroxydecanoyl-acyl Carrier
Protein Dehydratase (faba) From Pseudomonas Aeruginosa
In Complex With 3-(pentylthio)-4h-1,2,4-triazole
pdb|4B0J|A Chain A, Crystal Structure Of 3-hydroxydecanoyl-acyl Carrier
Protein Dehydratase (faba) From Pseudomonas Aeruginosa
In Complex With 5-(2- Thienyl)-3-isoxazolyl Methanol
pdb|4B0J|B Chain B, Crystal Structure Of 3-hydroxydecanoyl-acyl Carrier
Protein Dehydratase (faba) From Pseudomonas Aeruginosa
In Complex With 5-(2- Thienyl)-3-isoxazolyl Methanol
pdb|4B0J|C Chain C, Crystal Structure Of 3-hydroxydecanoyl-acyl Carrier
Protein Dehydratase (faba) From Pseudomonas Aeruginosa
In Complex With 5-(2- Thienyl)-3-isoxazolyl Methanol
pdb|4B0J|D Chain D, Crystal Structure Of 3-hydroxydecanoyl-acyl Carrier
Protein Dehydratase (faba) From Pseudomonas Aeruginosa
In Complex With 5-(2- Thienyl)-3-isoxazolyl Methanol
pdb|4B0J|E Chain E, Crystal Structure Of 3-hydroxydecanoyl-acyl Carrier
Protein Dehydratase (faba) From Pseudomonas Aeruginosa
In Complex With 5-(2- Thienyl)-3-isoxazolyl Methanol
pdb|4B0J|F Chain F, Crystal Structure Of 3-hydroxydecanoyl-acyl Carrier
Protein Dehydratase (faba) From Pseudomonas Aeruginosa
In Complex With 5-(2- Thienyl)-3-isoxazolyl Methanol
pdb|4B0J|G Chain G, Crystal Structure Of 3-hydroxydecanoyl-acyl Carrier
Protein Dehydratase (faba) From Pseudomonas Aeruginosa
In Complex With 5-(2- Thienyl)-3-isoxazolyl Methanol
pdb|4B0J|H Chain H, Crystal Structure Of 3-hydroxydecanoyl-acyl Carrier
Protein Dehydratase (faba) From Pseudomonas Aeruginosa
In Complex With 5-(2- Thienyl)-3-isoxazolyl Methanol
pdb|4B0J|I Chain I, Crystal Structure Of 3-hydroxydecanoyl-acyl Carrier
Protein Dehydratase (faba) From Pseudomonas Aeruginosa
In Complex With 5-(2- Thienyl)-3-isoxazolyl Methanol
pdb|4B0J|J Chain J, Crystal Structure Of 3-hydroxydecanoyl-acyl Carrier
Protein Dehydratase (faba) From Pseudomonas Aeruginosa
In Complex With 5-(2- Thienyl)-3-isoxazolyl Methanol
pdb|4B0J|K Chain K, Crystal Structure Of 3-hydroxydecanoyl-acyl Carrier
Protein Dehydratase (faba) From Pseudomonas Aeruginosa
In Complex With 5-(2- Thienyl)-3-isoxazolyl Methanol
pdb|4B0J|L Chain L, Crystal Structure Of 3-hydroxydecanoyl-acyl Carrier
Protein Dehydratase (faba) From Pseudomonas Aeruginosa
In Complex With 5-(2- Thienyl)-3-isoxazolyl Methanol
pdb|4B0J|M Chain M, Crystal Structure Of 3-hydroxydecanoyl-acyl Carrier
Protein Dehydratase (faba) From Pseudomonas Aeruginosa
In Complex With 5-(2- Thienyl)-3-isoxazolyl Methanol
pdb|4B0J|N Chain N, Crystal Structure Of 3-hydroxydecanoyl-acyl Carrier
Protein Dehydratase (faba) From Pseudomonas Aeruginosa
In Complex With 5-(2- Thienyl)-3-isoxazolyl Methanol
pdb|4B0J|O Chain O, Crystal Structure Of 3-hydroxydecanoyl-acyl Carrier
Protein Dehydratase (faba) From Pseudomonas Aeruginosa
In Complex With 5-(2- Thienyl)-3-isoxazolyl Methanol
pdb|4B0J|P Chain P, Crystal Structure Of 3-hydroxydecanoyl-acyl Carrier
Protein Dehydratase (faba) From Pseudomonas Aeruginosa
In Complex With 5-(2- Thienyl)-3-isoxazolyl Methanol
pdb|4B0J|Q Chain Q, Crystal Structure Of 3-hydroxydecanoyl-acyl Carrier
Protein Dehydratase (faba) From Pseudomonas Aeruginosa
In Complex With 5-(2- Thienyl)-3-isoxazolyl Methanol
pdb|4B0J|R Chain R, Crystal Structure Of 3-hydroxydecanoyl-acyl Carrier
Protein Dehydratase (faba) From Pseudomonas Aeruginosa
In Complex With 5-(2- Thienyl)-3-isoxazolyl Methanol
pdb|4B0J|S Chain S, Crystal Structure Of 3-hydroxydecanoyl-acyl Carrier
Protein Dehydratase (faba) From Pseudomonas Aeruginosa
In Complex With 5-(2- Thienyl)-3-isoxazolyl Methanol
pdb|4B0J|T Chain T, Crystal Structure Of 3-hydroxydecanoyl-acyl Carrier
Protein Dehydratase (faba) From Pseudomonas Aeruginosa
In Complex With 5-(2- Thienyl)-3-isoxazolyl Methanol
Length = 171
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 35/93 (37%), Gaps = 10/93 (10%)
Query: 440 RISSGSLSGITAEKLREDNELWKDRMTYYKKIDGLFHKGRYRNVMDMNAYLGGFAAAMSK 499
R S G L G +L N L DR+ + + G + KG +D+N L FA
Sbjct: 14 RCSRGELFGPGNAQLPAPNMLMIDRIVHISDVGGKYGKGELVAELDINPDLWFFACHFEG 73
Query: 500 YPVWVMNVVPFHSNPDTLGAIYERGLIGTYQDW 532
PV P LG L+G Y W
Sbjct: 74 DPVM----------PGCLGLDAMWQLVGFYLGW 96
>pdb|2VTB|B Chain B, Structure Of Cryptochrome 3 - Dna Complex
Length = 525
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 294 GCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPPIHWKKYWR 334
GC+ P ++Y+ + E +RV YW+L + W+ Y+R
Sbjct: 296 GCISPRFIYEEVQRYEKERVANNSTYWVLF--ELIWRDYFR 334
>pdb|2J4D|A Chain A, Cryptochrome 3 From Arabidopsis Thaliana
pdb|2J4D|B Chain B, Cryptochrome 3 From Arabidopsis Thaliana
Length = 525
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 294 GCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPPIHWKKYWR 334
GC+ P ++Y+ + E +RV YW+L + W+ Y+R
Sbjct: 295 GCISPRFIYEEVQRYEKERVANNSTYWVLF--ELIWRDYFR 333
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,052,562
Number of Sequences: 62578
Number of extensions: 942819
Number of successful extensions: 1771
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1769
Number of HSP's gapped (non-prelim): 9
length of query: 629
length of database: 14,973,337
effective HSP length: 105
effective length of query: 524
effective length of database: 8,402,647
effective search space: 4402987028
effective search space used: 4402987028
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)