Query 006834
Match_columns 629
No_of_seqs 676 out of 3174
Neff 6.3
Searched_HMMs 46136
Date Thu Mar 28 15:09:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006834.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006834hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03141 Methyltransf_29: Puta 100.0 4E-151 9E-156 1214.7 34.5 500 110-621 1-506 (506)
2 PF03141 Methyltransf_29: Puta 100.0 4.2E-30 9.2E-35 278.1 8.2 192 405-623 33-262 (506)
3 PLN02336 phosphoethanolamine N 99.8 1.3E-20 2.9E-25 209.8 17.9 329 209-583 26-370 (475)
4 COG2226 UbiE Methylase involve 99.7 2.6E-16 5.7E-21 159.7 12.9 115 206-324 37-156 (238)
5 PF08241 Methyltransf_11: Meth 99.6 1.9E-15 4.1E-20 129.3 10.2 92 227-322 1-95 (95)
6 PF01209 Ubie_methyltran: ubiE 99.6 1.5E-15 3.3E-20 154.5 11.3 111 211-324 38-153 (233)
7 PLN02233 ubiquinone biosynthes 99.6 1.4E-14 3.1E-19 149.7 14.4 111 211-325 64-183 (261)
8 COG2227 UbiG 2-polyprenyl-3-me 99.5 1.6E-14 3.4E-19 145.1 10.0 103 223-329 60-166 (243)
9 PRK10258 biotin biosynthesis p 99.5 8.4E-14 1.8E-18 142.4 14.3 114 207-326 29-142 (251)
10 PLN02396 hexaprenyldihydroxybe 99.5 1.4E-13 3.1E-18 146.2 14.2 138 223-364 132-287 (322)
11 PF13489 Methyltransf_23: Meth 99.5 8.6E-14 1.9E-18 131.0 10.7 148 206-363 7-160 (161)
12 PLN02244 tocopherol O-methyltr 99.5 2.2E-13 4.8E-18 146.0 14.3 116 206-324 99-223 (340)
13 PTZ00098 phosphoethanolamine N 99.5 2.4E-13 5.2E-18 140.8 13.9 113 209-325 41-157 (263)
14 PRK01544 bifunctional N5-gluta 99.5 4.5E-12 9.7E-17 142.6 23.6 291 223-596 139-477 (506)
15 PRK14103 trans-aconitate 2-met 99.5 4.2E-13 9.2E-18 137.9 12.7 109 210-325 19-127 (255)
16 PRK05785 hypothetical protein; 99.4 7.9E-13 1.7E-17 134.0 12.8 90 223-318 52-141 (226)
17 PRK01683 trans-aconitate 2-met 99.4 7.4E-13 1.6E-17 135.9 12.6 112 209-325 20-131 (258)
18 TIGR02752 MenG_heptapren 2-hep 99.4 1.3E-12 2.9E-17 131.6 13.9 116 207-325 32-152 (231)
19 PRK11036 putative S-adenosyl-L 99.4 5.9E-13 1.3E-17 136.9 11.4 101 222-326 44-151 (255)
20 PRK08317 hypothetical protein; 99.4 4.6E-12 9.9E-17 126.7 16.9 118 206-326 5-126 (241)
21 TIGR00477 tehB tellurite resis 99.4 2.1E-12 4.5E-17 127.8 13.9 107 211-323 21-132 (195)
22 PRK11207 tellurite resistance 99.4 2.3E-12 5E-17 127.7 13.7 106 212-323 22-133 (197)
23 TIGR00740 methyltransferase, p 99.4 1.2E-12 2.6E-17 133.1 11.9 101 223-325 54-162 (239)
24 PF12847 Methyltransf_18: Meth 99.4 1.2E-12 2.6E-17 116.5 10.4 98 224-325 3-112 (112)
25 PRK11088 rrmA 23S rRNA methylt 99.4 1.2E-12 2.7E-17 135.9 11.9 97 223-327 86-184 (272)
26 TIGR02072 BioC biotin biosynth 99.4 2.4E-12 5.2E-17 129.0 13.4 117 209-327 20-138 (240)
27 PF13847 Methyltransf_31: Meth 99.4 1.7E-12 3.7E-17 122.8 10.8 100 223-325 4-111 (152)
28 PLN02336 phosphoethanolamine N 99.4 4.7E-12 1E-16 141.4 16.0 110 211-325 257-370 (475)
29 PRK15068 tRNA mo(5)U34 methylt 99.4 3.4E-12 7.3E-17 136.0 13.9 110 209-324 111-226 (322)
30 PF13649 Methyltransf_25: Meth 99.4 5.3E-13 1.2E-17 117.6 6.3 93 226-318 1-101 (101)
31 KOG1540 Ubiquinone biosynthesi 99.4 4.8E-12 1E-16 127.5 13.4 114 208-324 88-214 (296)
32 PLN02490 MPBQ/MSBQ methyltrans 99.4 1.1E-11 2.3E-16 132.6 16.7 134 223-363 114-253 (340)
33 COG4106 Tam Trans-aconitate me 99.4 3E-12 6.6E-17 126.1 11.4 150 211-381 21-170 (257)
34 TIGR00452 methyltransferase, p 99.3 7.8E-12 1.7E-16 132.5 13.8 111 209-325 110-226 (314)
35 PF05219 DREV: DREV methyltran 99.3 1.1E-11 2.4E-16 126.1 13.0 159 222-403 94-255 (265)
36 PF07021 MetW: Methionine bios 99.3 7.6E-12 1.6E-16 122.5 11.3 139 210-361 5-162 (193)
37 PRK15451 tRNA cmo(5)U34 methyl 99.3 7.6E-12 1.6E-16 128.3 11.6 117 206-324 40-164 (247)
38 PF02353 CMAS: Mycolic acid cy 99.3 8E-12 1.7E-16 130.1 11.3 123 194-324 36-166 (273)
39 PRK12335 tellurite resistance 99.3 1.9E-11 4.2E-16 128.0 13.9 97 224-324 122-223 (287)
40 smart00138 MeTrc Methyltransfe 99.3 1.4E-11 3E-16 127.7 11.8 103 222-324 99-242 (264)
41 PF08242 Methyltransf_12: Meth 99.3 1E-12 2.3E-17 115.0 2.7 92 227-320 1-99 (99)
42 PRK11873 arsM arsenite S-adeno 99.3 2.3E-11 5E-16 126.0 13.1 102 223-325 78-184 (272)
43 smart00828 PKS_MT Methyltransf 99.3 3.8E-11 8.1E-16 120.5 13.0 98 225-325 2-105 (224)
44 TIGR03587 Pse_Me-ase pseudamin 99.3 4E-11 8.7E-16 119.8 12.8 112 208-324 30-142 (204)
45 KOG1270 Methyltransferases [Co 99.2 2E-11 4.2E-16 123.8 9.3 101 223-330 90-201 (282)
46 PF03848 TehB: Tellurite resis 99.2 8E-11 1.7E-15 116.2 13.2 107 212-324 22-133 (192)
47 COG2230 Cfa Cyclopropane fatty 99.2 6.2E-11 1.3E-15 122.9 12.6 123 194-324 46-176 (283)
48 TIGR01934 MenG_MenH_UbiE ubiqu 99.2 1.5E-10 3.1E-15 115.1 14.2 115 208-325 27-144 (223)
49 TIGR03840 TMPT_Se_Te thiopurin 99.2 1.1E-10 2.3E-15 117.5 13.3 98 224-324 36-152 (213)
50 KOG4300 Predicted methyltransf 99.2 4.4E-11 9.5E-16 117.2 9.9 98 225-325 79-183 (252)
51 PRK00216 ubiE ubiquinone/menaq 99.2 1.7E-10 3.6E-15 115.9 14.5 114 209-325 40-159 (239)
52 PF05401 NodS: Nodulation prot 99.2 2.2E-11 4.7E-16 119.6 7.6 99 223-325 44-147 (201)
53 PRK00107 gidB 16S rRNA methylt 99.2 3.4E-10 7.4E-15 111.6 15.7 115 223-362 46-165 (187)
54 PRK06922 hypothetical protein; 99.2 8.3E-11 1.8E-15 133.4 12.2 102 223-325 419-538 (677)
55 PRK11705 cyclopropane fatty ac 99.2 1.6E-10 3.5E-15 125.9 13.4 112 206-325 153-268 (383)
56 TIGR02469 CbiT precorrin-6Y C5 99.2 4E-10 8.7E-15 101.4 13.4 111 207-324 6-122 (124)
57 PLN02585 magnesium protoporphy 99.2 3.2E-10 6.9E-15 120.4 14.3 149 206-362 127-295 (315)
58 PRK00121 trmB tRNA (guanine-N( 99.2 1.4E-10 3.1E-15 115.5 10.3 101 223-325 41-157 (202)
59 TIGR02021 BchM-ChlM magnesium 99.2 2.4E-10 5.1E-15 114.8 11.9 153 205-364 38-204 (219)
60 PRK13944 protein-L-isoaspartat 99.1 4.9E-10 1.1E-14 111.8 13.6 110 206-324 58-173 (205)
61 PRK06202 hypothetical protein; 99.1 4.1E-10 8.9E-15 114.1 13.2 98 223-323 61-165 (232)
62 PF05175 MTS: Methyltransferas 99.1 1.4E-09 3E-14 105.4 15.6 122 199-324 9-140 (170)
63 PF08003 Methyltransf_9: Prote 99.1 3.5E-10 7.6E-15 117.7 11.8 110 209-324 104-219 (315)
64 TIGR00537 hemK_rel_arch HemK-r 99.1 6.8E-10 1.5E-14 108.0 12.7 97 224-325 21-141 (179)
65 TIGR00406 prmA ribosomal prote 99.1 1E-09 2.2E-14 115.2 14.2 95 223-325 160-260 (288)
66 PRK15001 SAM-dependent 23S rib 99.1 1.2E-09 2.7E-14 118.4 15.1 112 209-324 217-340 (378)
67 PRK05134 bifunctional 3-demeth 99.1 1E-09 2.3E-14 110.8 13.3 112 209-326 37-153 (233)
68 PRK13255 thiopurine S-methyltr 99.1 1.1E-09 2.4E-14 110.5 13.3 97 224-323 39-154 (218)
69 TIGR00138 gidB 16S rRNA methyl 99.1 2.6E-09 5.6E-14 104.8 15.0 95 223-324 43-142 (181)
70 PRK09489 rsmC 16S ribosomal RN 99.1 1.5E-09 3.4E-14 116.5 14.4 114 207-325 183-304 (342)
71 PRK13942 protein-L-isoaspartat 99.1 1.6E-09 3.4E-14 108.8 13.0 111 205-324 61-176 (212)
72 TIGR00080 pimt protein-L-isoas 99.1 2E-09 4.3E-14 108.1 13.5 110 206-324 63-177 (215)
73 TIGR00091 tRNA (guanine-N(7)-) 99.1 7.9E-10 1.7E-14 109.4 10.3 99 224-324 18-132 (194)
74 PRK00517 prmA ribosomal protei 99.0 1.5E-09 3.2E-14 111.6 12.3 95 223-325 120-214 (250)
75 PF13659 Methyltransf_26: Meth 99.0 5.6E-10 1.2E-14 100.2 8.0 100 224-325 2-116 (117)
76 TIGR01983 UbiG ubiquinone bios 99.0 4.2E-09 9.1E-14 105.5 15.0 101 223-327 46-152 (224)
77 COG2813 RsmC 16S RNA G1207 met 99.0 3.1E-09 6.6E-14 110.8 14.1 133 189-325 126-267 (300)
78 PRK08287 cobalt-precorrin-6Y C 99.0 6.1E-09 1.3E-13 102.1 15.6 111 205-324 16-131 (187)
79 TIGR02081 metW methionine bios 99.0 4.4E-09 9.6E-14 103.8 14.5 105 210-326 5-111 (194)
80 PF08241 Methyltransf_11: Meth 99.0 1.7E-10 3.6E-15 98.5 3.6 91 484-580 1-95 (95)
81 PRK11188 rrmJ 23S rRNA methylt 99.0 2.3E-09 5E-14 107.5 11.5 94 224-324 53-165 (209)
82 PRK14967 putative methyltransf 99.0 7.4E-09 1.6E-13 104.5 15.0 99 224-325 38-160 (223)
83 PRK14121 tRNA (guanine-N(7)-)- 99.0 2.8E-09 6.2E-14 115.4 12.7 99 224-324 124-235 (390)
84 KOG3010 Methyltransferase [Gen 99.0 1.1E-09 2.5E-14 109.9 8.6 95 224-323 35-135 (261)
85 PF03291 Pox_MCEL: mRNA cappin 99.0 1.4E-09 3.1E-14 116.1 9.3 105 222-328 62-190 (331)
86 KOG1271 Methyltransferases [Ge 99.0 6.6E-09 1.4E-13 100.3 12.6 101 225-326 70-183 (227)
87 PRK04266 fibrillarin; Provisio 99.0 1.4E-08 2.9E-13 103.2 15.4 104 215-325 67-177 (226)
88 PLN03075 nicotianamine synthas 99.0 4.2E-09 9.1E-14 110.4 11.9 102 222-324 123-233 (296)
89 TIGR02716 C20_methyl_CrtF C-20 99.0 5.3E-09 1.1E-13 110.5 12.9 111 209-325 138-255 (306)
90 PF06325 PrmA: Ribosomal prote 99.0 4E-09 8.8E-14 110.9 11.9 118 199-324 138-259 (295)
91 TIGR03534 RF_mod_PrmC protein- 99.0 2.4E-08 5.3E-13 101.5 17.2 115 205-324 73-217 (251)
92 TIGR03438 probable methyltrans 98.9 5E-09 1.1E-13 110.7 12.3 102 223-324 64-177 (301)
93 COG4976 Predicted methyltransf 98.9 2.3E-10 4.9E-15 113.8 1.9 134 221-362 124-261 (287)
94 PRK07580 Mg-protoporphyrin IX 98.9 5.8E-09 1.2E-13 104.8 11.9 109 206-320 46-162 (230)
95 COG2264 PrmA Ribosomal protein 98.9 3.2E-09 6.8E-14 111.1 10.2 112 203-324 147-263 (300)
96 PRK13256 thiopurine S-methyltr 98.9 1.2E-08 2.7E-13 103.3 14.1 100 223-325 44-164 (226)
97 KOG1541 Predicted protein carb 98.9 7E-09 1.5E-13 102.9 11.8 116 205-324 33-160 (270)
98 cd02440 AdoMet_MTases S-adenos 98.9 7.6E-09 1.7E-13 87.6 10.0 97 225-323 1-103 (107)
99 PRK14968 putative methyltransf 98.9 3E-08 6.6E-13 96.1 15.4 99 223-325 24-149 (188)
100 COG4123 Predicted O-methyltran 98.9 2E-08 4.3E-13 102.7 12.9 121 200-325 26-171 (248)
101 PRK00377 cbiT cobalt-precorrin 98.9 2.3E-08 5E-13 99.1 13.2 105 214-324 34-145 (198)
102 PLN02232 ubiquinone biosynthes 98.9 5.3E-09 1.1E-13 100.5 8.2 72 252-324 2-81 (160)
103 TIGR01177 conserved hypothetic 98.9 2.3E-08 5.1E-13 106.9 13.9 115 207-326 169-296 (329)
104 PTZ00146 fibrillarin; Provisio 98.9 2.5E-08 5.4E-13 104.3 13.6 96 224-323 134-236 (293)
105 KOG1975 mRNA cap methyltransfe 98.8 6.3E-09 1.4E-13 108.2 8.3 104 223-328 118-241 (389)
106 PRK00312 pcm protein-L-isoaspa 98.8 3.4E-08 7.4E-13 98.7 13.4 108 206-325 64-176 (212)
107 PRK09328 N5-glutamine S-adenos 98.8 8.9E-08 1.9E-12 99.0 16.9 116 205-324 93-238 (275)
108 PRK14966 unknown domain/N5-glu 98.8 8.2E-08 1.8E-12 104.9 17.2 115 205-324 238-381 (423)
109 PRK00107 gidB 16S rRNA methylt 98.8 3.4E-08 7.4E-13 97.5 12.9 152 459-622 27-187 (187)
110 TIGR00438 rrmJ cell division p 98.8 2.5E-08 5.5E-13 97.9 12.0 95 224-324 34-146 (188)
111 TIGR00536 hemK_fam HemK family 98.8 1.5E-07 3.4E-12 98.5 17.0 118 205-325 98-245 (284)
112 PRK07402 precorrin-6B methylas 98.8 7.9E-08 1.7E-12 95.0 13.9 113 205-325 25-143 (196)
113 TIGR03533 L3_gln_methyl protei 98.8 1.4E-07 3.1E-12 99.0 16.1 100 224-325 123-252 (284)
114 KOG2361 Predicted methyltransf 98.8 3.3E-08 7.1E-13 99.5 9.6 122 203-324 52-183 (264)
115 PF01135 PCMT: Protein-L-isoas 98.7 4.4E-08 9.4E-13 98.4 10.0 111 205-324 57-172 (209)
116 KOG2940 Predicted methyltransf 98.7 1.1E-08 2.5E-13 101.8 5.6 99 223-324 73-174 (325)
117 COG2518 Pcm Protein-L-isoaspar 98.7 1.1E-07 2.4E-12 94.7 12.6 108 205-324 57-169 (209)
118 PRK11805 N5-glutamine S-adenos 98.7 3E-07 6.4E-12 97.6 15.7 99 224-324 135-263 (307)
119 TIGR03704 PrmC_rel_meth putati 98.7 5.5E-07 1.2E-11 92.9 17.3 119 204-324 69-216 (251)
120 KOG3987 Uncharacterized conser 98.7 7.8E-09 1.7E-13 101.4 3.2 183 194-403 84-275 (288)
121 PRK11783 rlmL 23S rRNA m(2)G24 98.7 3.7E-07 7.9E-12 107.1 17.5 123 481-605 540-679 (702)
122 PRK13943 protein-L-isoaspartat 98.7 1.1E-07 2.5E-12 101.3 11.8 110 206-324 66-180 (322)
123 PRK10901 16S rRNA methyltransf 98.7 2.2E-07 4.8E-12 102.9 14.5 113 211-326 235-374 (427)
124 smart00650 rADc Ribosomal RNA 98.7 1.2E-07 2.5E-12 91.7 10.2 105 210-323 3-112 (169)
125 PTZ00098 phosphoethanolamine N 98.7 2.2E-08 4.7E-13 103.9 5.3 126 452-583 8-157 (263)
126 PF13489 Methyltransf_23: Meth 98.7 5.4E-09 1.2E-13 98.3 0.8 94 480-584 23-117 (161)
127 PF06080 DUF938: Protein of un 98.7 1.9E-07 4.1E-12 92.9 11.7 113 206-326 12-143 (204)
128 PRK00811 spermidine synthase; 98.7 2.2E-07 4.7E-12 97.5 12.7 101 222-324 76-191 (283)
129 PHA03411 putative methyltransf 98.6 1.8E-07 4E-12 97.0 11.7 98 224-323 66-182 (279)
130 TIGR00563 rsmB ribosomal RNA s 98.6 3.6E-07 7.9E-12 101.1 13.2 117 209-328 227-372 (426)
131 PF05891 Methyltransf_PK: AdoM 98.6 9.9E-08 2.1E-12 95.4 7.7 139 222-364 55-199 (218)
132 PLN02233 ubiquinone biosynthes 98.6 1E-07 2.2E-12 98.8 8.1 98 481-583 75-183 (261)
133 PF05724 TPMT: Thiopurine S-me 98.6 4E-07 8.6E-12 92.1 12.0 113 206-324 24-155 (218)
134 PF05148 Methyltransf_8: Hypot 98.6 4.2E-07 9E-12 90.3 11.7 124 209-364 60-183 (219)
135 PRK14901 16S rRNA methyltransf 98.6 4.4E-07 9.6E-12 100.7 13.1 117 209-327 241-387 (434)
136 PRK14904 16S rRNA methyltransf 98.6 2.4E-07 5.3E-12 103.1 11.0 111 214-327 244-380 (445)
137 PF02353 CMAS: Mycolic acid cy 98.6 4.5E-08 9.8E-13 102.1 4.6 102 474-581 59-165 (273)
138 PF01739 CheR: CheR methyltran 98.6 3.2E-07 7E-12 91.2 10.3 104 221-324 30-175 (196)
139 PRK10258 biotin biosynthesis p 98.6 2E-07 4.3E-12 95.4 9.0 99 478-582 41-140 (251)
140 PRK01581 speE spermidine synth 98.6 3.1E-07 6.6E-12 98.8 10.5 116 207-324 135-268 (374)
141 COG2226 UbiE Methylase involve 98.6 1.4E-07 3E-12 96.3 7.5 114 459-583 37-157 (238)
142 TIGR00446 nop2p NOL1/NOP2/sun 98.5 3.1E-07 6.7E-12 95.3 9.9 111 215-327 66-202 (264)
143 PHA03412 putative methyltransf 98.5 4.6E-07 1E-11 92.1 10.7 96 223-319 50-158 (241)
144 PLN02244 tocopherol O-methyltr 98.5 1.6E-07 3.5E-12 101.0 7.7 95 480-582 119-223 (340)
145 PRK14103 trans-aconitate 2-met 98.5 2.1E-07 4.5E-12 95.8 8.1 106 471-582 21-126 (255)
146 PRK14903 16S rRNA methyltransf 98.5 7.1E-07 1.5E-11 99.0 12.3 115 211-327 228-369 (431)
147 PF00891 Methyltransf_2: O-met 98.5 7.1E-07 1.5E-11 90.9 11.4 97 223-325 101-200 (241)
148 PRK04457 spermidine synthase; 98.5 7.5E-07 1.6E-11 92.5 11.3 115 207-323 52-176 (262)
149 PF12847 Methyltransf_18: Meth 98.5 9.5E-08 2.1E-12 84.9 3.8 96 482-582 4-111 (112)
150 PF01209 Ubie_methyltran: ubiE 98.5 1.5E-07 3.3E-12 96.0 5.6 114 459-582 33-153 (233)
151 KOG3045 Predicted RNA methylas 98.5 7.6E-07 1.6E-11 90.4 10.4 123 209-365 168-290 (325)
152 COG2519 GCD14 tRNA(1-methylade 98.5 2E-06 4.4E-11 87.7 13.4 110 209-328 83-199 (256)
153 PLN02366 spermidine synthase 98.5 1.5E-06 3.2E-11 92.3 13.0 100 223-324 92-206 (308)
154 TIGR00478 tly hemolysin TlyA f 98.5 3.7E-06 8E-11 85.6 15.1 103 209-324 63-171 (228)
155 PRK14902 16S rRNA methyltransf 98.5 8.6E-07 1.9E-11 98.7 11.5 114 210-326 240-381 (444)
156 TIGR00417 speE spermidine synt 98.5 1.6E-06 3.4E-11 90.4 12.6 101 222-324 72-186 (270)
157 PRK11036 putative S-adenosyl-L 98.5 2E-07 4.2E-12 96.0 5.7 96 481-582 46-149 (255)
158 COG2242 CobL Precorrin-6B meth 98.4 2.5E-06 5.4E-11 83.5 12.8 111 206-324 20-135 (187)
159 COG2890 HemK Methylase of poly 98.4 2.4E-06 5.2E-11 89.6 13.4 97 225-324 113-238 (280)
160 PRK10611 chemotaxis methyltran 98.4 1.5E-06 3.2E-11 91.3 11.3 101 223-323 116-261 (287)
161 PF02390 Methyltransf_4: Putat 98.4 2.3E-06 5E-11 85.1 12.1 98 225-324 20-133 (195)
162 PRK11088 rrmA 23S rRNA methylt 98.4 5.2E-07 1.1E-11 93.9 7.6 103 480-593 86-193 (272)
163 PRK03612 spermidine synthase; 98.4 2.9E-06 6.3E-11 96.3 14.0 101 222-324 297-415 (521)
164 PRK12335 tellurite resistance 98.4 7.4E-07 1.6E-11 93.5 8.6 115 482-604 123-257 (287)
165 PRK10909 rsmD 16S rRNA m(2)G96 98.4 5.1E-06 1.1E-10 82.9 14.1 130 189-325 22-160 (199)
166 PRK15001 SAM-dependent 23S rib 98.4 4.8E-05 1.1E-09 82.9 22.3 129 481-621 230-373 (378)
167 PRK00377 cbiT cobalt-precorrin 98.4 2.4E-06 5.3E-11 84.6 11.3 150 447-604 8-168 (198)
168 PRK13168 rumA 23S rRNA m(5)U19 98.4 2.8E-06 6.1E-11 94.5 12.8 112 206-327 283-403 (443)
169 PRK15068 tRNA mo(5)U34 methylt 98.4 6.5E-07 1.4E-11 95.7 7.4 95 481-581 124-225 (322)
170 PRK11207 tellurite resistance 98.4 5E-07 1.1E-11 89.7 5.8 94 481-580 32-132 (197)
171 PRK09489 rsmC 16S ribosomal RN 98.4 5.8E-05 1.3E-09 81.4 22.1 130 482-622 199-337 (342)
172 TIGR00138 gidB 16S rRNA methyl 98.4 1.1E-06 2.4E-11 86.3 8.1 133 459-604 25-165 (181)
173 TIGR00477 tehB tellurite resis 98.4 5.2E-07 1.1E-11 89.4 5.8 117 481-605 32-168 (195)
174 TIGR02752 MenG_heptapren 2-hep 98.4 1.8E-06 4E-11 87.0 9.9 98 481-583 47-152 (231)
175 PRK08287 cobalt-precorrin-6Y C 98.3 3E-06 6.4E-11 83.1 10.9 133 480-621 32-184 (187)
176 TIGR00537 hemK_rel_arch HemK-r 98.3 2.3E-06 4.9E-11 83.3 9.8 132 482-622 22-178 (179)
177 COG0220 Predicted S-adenosylme 98.3 2.4E-06 5.2E-11 86.8 10.2 98 225-324 51-164 (227)
178 PLN02781 Probable caffeoyl-CoA 98.3 2.7E-06 5.8E-11 86.9 10.3 97 223-323 69-177 (234)
179 PRK11705 cyclopropane fatty ac 98.3 9.1E-07 2E-11 96.7 7.2 100 475-582 165-267 (383)
180 TIGR00452 methyltransferase, p 98.3 1.3E-06 2.9E-11 92.9 8.2 96 481-581 123-224 (314)
181 smart00828 PKS_MT Methyltransf 98.3 6.1E-07 1.3E-11 90.1 5.3 94 482-583 2-105 (224)
182 KOG2899 Predicted methyltransf 98.3 2.7E-06 5.8E-11 85.9 9.5 101 222-323 58-208 (288)
183 COG4976 Predicted methyltransf 98.3 5.2E-07 1.1E-11 90.3 3.7 145 472-622 118-286 (287)
184 PLN02396 hexaprenyldihydroxybe 98.3 7.1E-07 1.5E-11 95.3 4.9 96 482-583 134-236 (322)
185 COG1352 CheR Methylase of chem 98.3 7.1E-06 1.5E-10 85.3 12.0 102 222-323 96-240 (268)
186 PRK01683 trans-aconitate 2-met 98.3 1.6E-06 3.5E-11 89.0 7.1 124 472-602 24-154 (258)
187 PF05401 NodS: Nodulation prot 98.2 2.7E-06 5.9E-11 84.0 7.9 140 474-620 38-193 (201)
188 PRK08317 hypothetical protein; 98.2 2.3E-06 4.9E-11 85.6 6.8 99 481-582 21-124 (241)
189 TIGR00740 methyltransferase, p 98.2 1E-06 2.3E-11 89.7 4.3 99 481-583 55-162 (239)
190 PRK03522 rumB 23S rRNA methylu 98.2 8.7E-06 1.9E-10 86.7 11.5 112 207-327 160-277 (315)
191 TIGR00406 prmA ribosomal prote 98.2 3.9E-06 8.5E-11 88.2 8.5 115 481-604 161-281 (288)
192 PF08704 GCD14: tRNA methyltra 98.2 1.2E-05 2.6E-10 82.7 11.8 110 209-327 29-149 (247)
193 COG3963 Phospholipid N-methylt 98.2 1.3E-05 2.7E-10 77.0 10.6 118 205-324 33-156 (194)
194 PRK11783 rlmL 23S rRNA m(2)G24 98.2 8.6E-06 1.9E-10 95.7 11.1 101 223-325 539-657 (702)
195 COG0500 SmtA SAM-dependent met 98.2 2.3E-05 5E-10 68.8 11.3 97 226-325 52-156 (257)
196 PRK15451 tRNA cmo(5)U34 methyl 98.2 2E-06 4.4E-11 88.2 5.1 99 482-583 59-165 (247)
197 PLN02672 methionine S-methyltr 98.2 3.1E-05 6.6E-10 93.7 15.7 100 224-324 120-278 (1082)
198 PRK15128 23S rRNA m(5)C1962 me 98.1 1.9E-05 4.2E-10 86.6 12.9 100 223-324 221-339 (396)
199 COG1041 Predicted DNA modifica 98.1 1.3E-05 2.8E-10 85.4 10.9 115 206-325 183-311 (347)
200 PRK14968 putative methyltransf 98.1 8.4E-06 1.8E-10 79.0 8.8 135 481-621 25-188 (188)
201 TIGR02072 BioC biotin biosynth 98.1 5.7E-06 1.2E-10 82.9 7.9 97 481-582 36-135 (240)
202 PF07942 N2227: N2227-like pro 98.1 3.1E-05 6.6E-10 80.6 13.3 154 206-365 38-241 (270)
203 COG2521 Predicted archaeal met 98.1 1E-05 2.2E-10 81.3 9.1 146 205-363 117-274 (287)
204 PRK00517 prmA ribosomal protei 98.1 1.8E-05 3.9E-10 81.5 10.7 124 481-621 121-249 (250)
205 TIGR00479 rumA 23S rRNA (uraci 98.1 2E-05 4.4E-10 87.4 11.8 108 207-323 279-395 (431)
206 COG4122 Predicted O-methyltran 98.1 4.9E-05 1.1E-09 76.8 13.4 97 223-323 60-165 (219)
207 PRK05785 hypothetical protein; 98.1 4.2E-06 9.1E-11 85.0 5.8 106 459-576 35-141 (226)
208 PRK00274 ksgA 16S ribosomal RN 98.1 1.2E-05 2.6E-10 83.9 9.3 86 206-296 28-115 (272)
209 PRK00121 trmB tRNA (guanine-N( 98.1 5.6E-06 1.2E-10 82.6 6.5 122 480-603 41-178 (202)
210 PRK14896 ksgA 16S ribosomal RN 98.1 2.1E-05 4.6E-10 81.4 10.6 84 206-296 15-101 (258)
211 PF08242 Methyltransf_12: Meth 98.1 2.8E-06 6E-11 74.2 3.2 91 484-578 1-99 (99)
212 TIGR00755 ksgA dimethyladenosi 98.0 4.8E-05 1E-09 78.4 12.5 101 206-319 15-121 (253)
213 PRK11873 arsM arsenite S-adeno 98.0 6E-06 1.3E-10 85.6 5.8 100 475-582 75-183 (272)
214 TIGR01934 MenG_MenH_UbiE ubiqu 98.0 1.3E-05 2.7E-10 79.7 7.6 99 480-582 40-143 (223)
215 PF01596 Methyltransf_3: O-met 98.0 2.3E-05 4.9E-10 78.6 9.4 97 223-323 46-154 (205)
216 KOG1661 Protein-L-isoaspartate 98.0 2.2E-05 4.8E-10 77.9 9.0 109 206-323 66-192 (237)
217 PLN02476 O-methyltransferase 98.0 9.7E-05 2.1E-09 77.3 14.3 97 223-323 119-227 (278)
218 PF10294 Methyltransf_16: Puta 98.0 2.9E-05 6.3E-10 75.7 9.7 118 204-324 23-156 (173)
219 KOG1331 Predicted methyltransf 98.0 3.4E-06 7.4E-11 87.1 3.3 96 223-324 46-143 (293)
220 PF13847 Methyltransf_31: Meth 98.0 5E-06 1.1E-10 78.6 4.2 96 482-584 6-112 (152)
221 TIGR02085 meth_trns_rumB 23S r 98.0 3.7E-05 7.9E-10 83.9 11.4 95 224-325 235-335 (374)
222 PF01170 UPF0020: Putative RNA 98.0 3.5E-05 7.6E-10 75.5 9.5 116 206-323 14-150 (179)
223 PRK11727 23S rRNA mA1618 methy 97.9 7.7E-05 1.7E-09 79.7 12.4 95 204-299 90-202 (321)
224 KOG1499 Protein arginine N-met 97.9 2.7E-05 5.8E-10 82.8 8.5 96 223-322 61-165 (346)
225 COG2230 Cfa Cyclopropane fatty 97.9 1.9E-05 4E-10 82.5 7.0 102 474-581 69-175 (283)
226 KOG2904 Predicted methyltransf 97.9 9.2E-05 2E-09 76.2 11.7 119 205-324 130-285 (328)
227 PRK04148 hypothetical protein; 97.9 8.7E-05 1.9E-09 69.4 10.4 103 208-323 4-108 (134)
228 COG2263 Predicted RNA methylas 97.9 0.00011 2.3E-09 72.2 11.3 86 223-313 46-136 (198)
229 smart00138 MeTrc Methyltransfe 97.9 2.2E-05 4.7E-10 81.7 6.9 129 452-584 71-244 (264)
230 PRK05134 bifunctional 3-demeth 97.9 1.6E-05 3.4E-10 80.4 5.5 96 482-583 51-152 (233)
231 TIGR00095 RNA methyltransferas 97.9 0.00017 3.6E-09 71.4 12.6 115 206-325 34-160 (189)
232 PRK06922 hypothetical protein; 97.9 1.6E-05 3.5E-10 91.0 6.0 101 481-583 420-538 (677)
233 PRK07402 precorrin-6B methylas 97.9 0.00012 2.6E-09 72.3 11.4 109 481-598 42-159 (196)
234 PRK04266 fibrillarin; Provisio 97.9 0.00014 3E-09 74.0 12.0 96 475-581 70-175 (226)
235 PRK09328 N5-glutamine S-adenos 97.9 6E-05 1.3E-09 78.0 9.4 135 481-621 110-275 (275)
236 PRK14967 putative methyltransf 97.8 5.3E-05 1.2E-09 76.5 8.6 118 482-604 39-182 (223)
237 TIGR00438 rrmJ cell division p 97.8 3.3E-05 7.1E-10 75.9 6.8 131 475-620 30-186 (188)
238 TIGR01983 UbiG ubiquinone bios 97.8 4.7E-05 1E-09 76.2 8.1 124 454-583 19-150 (224)
239 PLN02490 MPBQ/MSBQ methyltrans 97.8 1.9E-05 4.1E-10 84.9 5.5 116 481-602 115-252 (340)
240 PRK14121 tRNA (guanine-N(7)-)- 97.8 3.7E-05 8E-10 83.8 7.7 118 481-601 124-256 (390)
241 PLN02823 spermine synthase 97.8 0.0001 2.3E-09 79.2 11.0 101 222-324 103-220 (336)
242 PRK01544 bifunctional N5-gluta 97.8 5.3E-05 1.1E-09 85.8 9.1 101 222-324 347-462 (506)
243 PF03848 TehB: Tellurite resis 97.8 2.6E-05 5.7E-10 77.3 5.9 115 482-604 33-167 (192)
244 TIGR00091 tRNA (guanine-N(7)-) 97.8 2.3E-05 5E-10 77.5 5.5 115 481-596 18-147 (194)
245 COG2813 RsmC 16S RNA G1207 met 97.8 0.00084 1.8E-08 70.6 16.8 130 482-622 161-300 (300)
246 PRK06202 hypothetical protein; 97.8 7.4E-05 1.6E-09 75.7 8.6 102 478-583 59-167 (232)
247 PTZ00338 dimethyladenosine tra 97.8 0.0001 2.2E-09 77.9 9.6 84 206-296 22-111 (294)
248 KOG3010 Methyltransferase [Gen 97.8 2.3E-05 5E-10 79.3 4.4 115 478-600 32-158 (261)
249 PRK04338 N(2),N(2)-dimethylgua 97.8 0.0002 4.4E-09 78.3 11.9 98 224-327 59-161 (382)
250 TIGR03587 Pse_Me-ase pseudamin 97.7 6.6E-05 1.4E-09 75.2 7.0 95 481-582 45-142 (204)
251 PRK11188 rrmJ 23S rRNA methylt 97.7 0.00014 3E-09 73.0 9.4 132 475-621 49-206 (209)
252 KOG1540 Ubiquinone biosynthesi 97.7 0.00011 2.4E-09 75.0 8.4 121 474-599 95-232 (296)
253 COG2227 UbiG 2-polyprenyl-3-me 97.7 4.4E-05 9.5E-10 77.5 5.5 95 483-583 63-162 (243)
254 PRK00216 ubiE ubiquinone/menaq 97.7 8.3E-05 1.8E-09 74.6 7.5 98 481-582 53-158 (239)
255 cd02440 AdoMet_MTases S-adenos 97.7 7.3E-05 1.6E-09 62.9 5.9 95 482-581 1-103 (107)
256 TIGR03534 RF_mod_PrmC protein- 97.7 0.00013 2.9E-09 74.0 8.7 118 481-602 89-237 (251)
257 PLN02589 caffeoyl-CoA O-methyl 97.7 0.00014 3E-09 75.1 8.6 97 223-323 80-189 (247)
258 PF12147 Methyltransf_20: Puta 97.7 0.00053 1.2E-08 71.5 12.9 202 151-364 70-296 (311)
259 PRK14966 unknown domain/N5-glu 97.7 0.00028 6E-09 77.7 11.4 137 482-622 254-419 (423)
260 PF13649 Methyltransf_25: Meth 97.7 1E-05 2.2E-10 71.1 0.2 90 483-576 1-101 (101)
261 TIGR02469 CbiT precorrin-6Y C5 97.7 0.00011 2.4E-09 65.8 6.9 93 481-581 21-121 (124)
262 PRK13942 protein-L-isoaspartat 97.7 5.4E-05 1.2E-09 76.1 5.3 94 475-582 74-176 (212)
263 PRK11805 N5-glutamine S-adenos 97.6 0.00015 3.3E-09 77.0 8.8 111 481-597 135-277 (307)
264 PF05185 PRMT5: PRMT5 arginine 97.6 0.00017 3.7E-09 80.5 9.4 97 223-321 187-294 (448)
265 PF02475 Met_10: Met-10+ like- 97.6 0.00031 6.8E-09 70.2 10.3 127 184-321 67-199 (200)
266 TIGR00536 hemK_fam HemK family 97.6 0.00027 5.8E-09 74.2 10.3 135 481-622 116-283 (284)
267 PTZ00146 fibrillarin; Provisio 97.6 0.00034 7.4E-09 73.6 10.8 98 475-581 130-236 (293)
268 TIGR02081 metW methionine bios 97.6 6.9E-05 1.5E-09 73.9 5.3 93 474-574 10-104 (194)
269 PF07021 MetW: Methionine bios 97.6 6.2E-05 1.3E-09 74.3 4.9 98 473-581 9-108 (193)
270 KOG1269 SAM-dependent methyltr 97.6 0.00011 2.3E-09 79.8 7.1 96 225-323 113-214 (364)
271 TIGR02021 BchM-ChlM magnesium 97.6 0.00014 3E-09 73.1 7.4 97 480-583 56-159 (219)
272 TIGR03533 L3_gln_methyl protei 97.6 0.00017 3.8E-09 75.7 8.4 120 481-606 123-274 (284)
273 PF03602 Cons_hypoth95: Conser 97.6 0.00026 5.6E-09 69.8 9.0 131 189-325 10-154 (183)
274 PRK07580 Mg-protoporphyrin IX 97.6 0.00022 4.8E-09 71.5 8.5 96 480-582 64-166 (230)
275 TIGR03704 PrmC_rel_meth putati 97.6 0.00018 3.9E-09 74.3 8.0 126 481-609 88-243 (251)
276 PRK00536 speE spermidine synth 97.6 0.00064 1.4E-08 70.7 11.8 93 220-324 70-171 (262)
277 PF02384 N6_Mtase: N-6 DNA Met 97.6 0.00026 5.6E-09 74.9 9.0 119 206-326 32-185 (311)
278 COG2890 HemK Methylase of poly 97.5 0.00047 1E-08 72.5 10.2 159 454-621 92-276 (280)
279 PF05219 DREV: DREV methyltran 97.5 0.00017 3.7E-09 74.2 6.5 92 479-581 94-187 (265)
280 COG0421 SpeE Spermidine syntha 97.5 0.00087 1.9E-08 70.4 11.9 102 221-324 75-190 (282)
281 TIGR02716 C20_methyl_CrtF C-20 97.5 0.00013 2.7E-09 77.3 5.7 102 477-583 147-255 (306)
282 PF05148 Methyltransf_8: Hypot 97.5 0.0011 2.3E-08 66.4 11.8 133 464-622 59-198 (219)
283 PF01728 FtsJ: FtsJ-like methy 97.5 0.0003 6.5E-09 68.5 7.4 114 205-324 5-139 (181)
284 TIGR00080 pimt protein-L-isoas 97.5 0.00012 2.6E-09 73.5 4.6 95 475-581 75-176 (215)
285 PRK13944 protein-L-isoaspartat 97.5 0.00018 3.9E-09 71.9 5.7 89 481-582 74-173 (205)
286 KOG3178 Hydroxyindole-O-methyl 97.4 0.00069 1.5E-08 72.3 9.8 97 223-325 178-276 (342)
287 COG0742 N6-adenine-specific me 97.4 0.0027 5.9E-08 62.6 13.3 136 188-326 10-156 (187)
288 PRK00312 pcm protein-L-isoaspa 97.4 0.00031 6.6E-09 70.3 6.7 88 481-582 80-175 (212)
289 KOG2352 Predicted spermine/spe 97.4 0.0012 2.7E-08 73.0 11.3 98 225-324 51-161 (482)
290 KOG3191 Predicted N6-DNA-methy 97.3 0.0019 4.2E-08 63.1 11.1 102 223-325 44-169 (209)
291 COG0030 KsgA Dimethyladenosine 97.3 0.00096 2.1E-08 69.1 9.7 86 206-296 16-105 (259)
292 COG4123 Predicted O-methyltran 97.3 0.0011 2.4E-08 68.2 10.0 119 480-602 45-190 (248)
293 PRK11933 yebU rRNA (cytosine-C 97.3 0.0019 4.1E-08 72.5 12.4 106 223-328 114-246 (470)
294 PF11968 DUF3321: Putative met 97.3 0.0017 3.6E-08 65.3 10.6 134 206-364 33-179 (219)
295 PRK04457 spermidine synthase; 97.3 0.0011 2.4E-08 69.0 9.7 137 479-621 66-216 (262)
296 PF05175 MTS: Methyltransferas 97.3 0.00028 6E-09 68.4 4.9 112 480-595 32-155 (170)
297 COG4106 Tam Trans-aconitate me 97.3 0.00055 1.2E-08 68.5 6.7 125 470-604 21-155 (257)
298 COG1092 Predicted SAM-dependen 97.3 0.00099 2.1E-08 72.9 9.3 101 223-325 218-337 (393)
299 TIGR03840 TMPT_Se_Te thiopurin 97.3 0.00028 6E-09 71.2 4.5 96 481-580 36-150 (213)
300 PF02527 GidB: rRNA small subu 97.2 0.0049 1.1E-07 60.9 12.9 92 225-323 51-147 (184)
301 TIGR02987 met_A_Alw26 type II 97.2 0.002 4.3E-08 73.4 11.7 105 223-327 32-199 (524)
302 PF09243 Rsm22: Mitochondrial 97.2 0.0022 4.8E-08 67.2 11.0 112 209-326 22-141 (274)
303 TIGR03438 probable methyltrans 97.2 0.00062 1.3E-08 72.1 6.8 99 481-581 65-176 (301)
304 TIGR02143 trmA_only tRNA (urac 97.2 0.0016 3.4E-08 70.7 10.0 107 206-324 184-311 (353)
305 PF01564 Spermine_synth: Sperm 97.2 0.00098 2.1E-08 68.7 7.9 117 206-324 60-191 (246)
306 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.2 0.001 2.2E-08 68.9 7.5 114 209-324 43-199 (256)
307 PRK13255 thiopurine S-methyltr 97.1 0.00059 1.3E-08 69.1 5.5 95 482-580 40-153 (218)
308 PRK05031 tRNA (uracil-5-)-meth 97.1 0.0022 4.8E-08 69.8 10.2 92 224-324 208-320 (362)
309 KOG4300 Predicted methyltransf 97.1 0.0012 2.5E-08 65.8 7.1 120 459-584 51-184 (252)
310 KOG0820 Ribosomal RNA adenine 97.1 0.0025 5.4E-08 65.9 9.6 84 206-296 44-133 (315)
311 KOG3420 Predicted RNA methylas 97.1 0.001 2.2E-08 62.7 6.2 87 206-296 34-124 (185)
312 PF01728 FtsJ: FtsJ-like methy 97.1 0.0017 3.6E-08 63.3 8.0 141 475-621 19-180 (181)
313 COG2520 Predicted methyltransf 97.1 0.003 6.5E-08 67.9 10.6 126 188-324 158-289 (341)
314 KOG1541 Predicted protein carb 97.1 0.0035 7.6E-08 63.0 10.2 142 475-619 46-201 (270)
315 COG1189 Predicted rRNA methyla 97.1 0.0082 1.8E-07 61.1 12.8 152 203-362 62-220 (245)
316 PF10672 Methyltrans_SAM: S-ad 97.0 0.0024 5.3E-08 67.2 9.2 113 206-325 112-239 (286)
317 COG2242 CobL Precorrin-6B meth 97.0 0.0097 2.1E-07 58.6 12.6 142 448-602 3-157 (187)
318 PF06325 PrmA: Ribosomal prote 97.0 0.0012 2.6E-08 69.8 6.7 126 482-622 164-295 (295)
319 KOG3201 Uncharacterized conser 97.0 0.00038 8.2E-09 66.7 2.7 136 223-375 30-176 (201)
320 KOG1500 Protein arginine N-met 97.0 0.0034 7.4E-08 66.3 9.5 98 223-324 178-282 (517)
321 PF00891 Methyltransf_2: O-met 97.0 0.00098 2.1E-08 67.9 5.5 100 474-583 95-200 (241)
322 PF08003 Methyltransf_9: Prote 97.0 0.0024 5.1E-08 67.3 8.3 95 481-581 117-218 (315)
323 TIGR03439 methyl_EasF probable 97.0 0.0058 1.3E-07 65.4 11.2 112 209-324 67-197 (319)
324 PF02390 Methyltransf_4: Putat 97.0 0.00084 1.8E-08 66.8 4.5 110 482-597 20-149 (195)
325 COG2264 PrmA Ribosomal protein 96.9 0.005 1.1E-07 65.1 10.4 121 479-607 162-289 (300)
326 TIGR01177 conserved hypothetic 96.9 0.0014 3.1E-08 70.2 6.4 117 475-599 180-309 (329)
327 KOG1663 O-methyltransferase [S 96.9 0.0057 1.2E-07 61.9 10.1 95 225-323 76-182 (237)
328 PF13659 Methyltransf_26: Meth 96.9 0.00033 7.1E-09 62.6 1.2 98 482-581 3-114 (117)
329 TIGR00308 TRM1 tRNA(guanine-26 96.8 0.0079 1.7E-07 65.8 11.1 95 224-325 46-148 (374)
330 PRK11760 putative 23S rRNA C24 96.8 0.0097 2.1E-07 63.9 11.3 92 222-323 211-304 (357)
331 PRK00050 16S rRNA m(4)C1402 me 96.8 0.0026 5.7E-08 67.3 7.0 58 208-267 7-64 (296)
332 COG4627 Uncharacterized protei 96.8 0.00016 3.4E-09 68.7 -2.0 62 269-330 30-92 (185)
333 KOG2915 tRNA(1-methyladenosine 96.8 0.018 3.8E-07 59.7 12.6 109 209-325 94-211 (314)
334 TIGR00563 rsmB ribosomal RNA s 96.8 0.0023 5E-08 71.1 6.8 99 481-581 240-367 (426)
335 KOG3045 Predicted RNA methylas 96.8 0.0045 9.8E-08 63.6 8.1 103 482-607 183-292 (325)
336 PRK00811 spermidine synthase; 96.8 0.0078 1.7E-07 63.3 10.2 101 478-581 75-190 (283)
337 TIGR00417 speE spermidine synt 96.7 0.0091 2E-07 62.3 10.5 103 477-581 70-185 (270)
338 COG2265 TrmA SAM-dependent met 96.6 0.012 2.6E-07 65.6 10.9 110 206-324 279-396 (432)
339 PRK01581 speE spermidine synth 96.6 0.014 3E-07 63.4 10.7 146 477-624 148-316 (374)
340 PF00398 RrnaAD: Ribosomal RNA 96.6 0.013 2.9E-07 60.8 10.2 103 205-316 15-123 (262)
341 TIGR00446 nop2p NOL1/NOP2/sun 96.6 0.0058 1.3E-07 63.5 7.5 101 475-581 69-198 (264)
342 PF08123 DOT1: Histone methyla 96.6 0.0061 1.3E-07 61.2 7.3 109 208-322 30-156 (205)
343 PRK10901 16S rRNA methyltransf 96.5 0.0048 1E-07 68.6 6.9 119 475-596 242-390 (427)
344 PRK14902 16S rRNA methyltransf 96.5 0.0053 1.1E-07 68.6 7.2 114 481-596 252-397 (444)
345 PRK14903 16S rRNA methyltransf 96.5 0.0049 1.1E-07 68.6 6.8 115 475-595 235-383 (431)
346 PRK14904 16S rRNA methyltransf 96.4 0.0062 1.4E-07 68.1 6.7 111 481-596 252-395 (445)
347 COG0144 Sun tRNA and rRNA cyto 96.4 0.044 9.5E-07 59.6 13.0 114 212-328 148-292 (355)
348 KOG2798 Putative trehalase [Ca 96.3 0.028 6.1E-07 59.3 10.7 155 206-365 132-336 (369)
349 COG0500 SmtA SAM-dependent met 96.3 0.017 3.6E-07 50.4 7.9 95 483-584 52-157 (257)
350 COG0116 Predicted N6-adenine-s 96.3 0.039 8.4E-07 60.1 12.1 118 206-325 177-345 (381)
351 TIGR00478 tly hemolysin TlyA f 96.3 0.0034 7.5E-08 64.0 3.8 106 481-602 77-213 (228)
352 KOG1270 Methyltransferases [Co 96.3 0.003 6.4E-08 65.1 3.2 98 481-584 91-197 (282)
353 COG0357 GidB Predicted S-adeno 96.3 0.043 9.2E-07 55.6 11.5 95 223-323 68-167 (215)
354 COG0220 Predicted S-adenosylme 96.3 0.0091 2E-07 60.9 6.7 113 481-596 50-180 (227)
355 PRK13943 protein-L-isoaspartat 96.2 0.0061 1.3E-07 65.4 5.5 96 475-582 78-180 (322)
356 KOG1709 Guanidinoacetate methy 96.2 0.028 6.1E-07 56.5 9.6 112 206-323 88-205 (271)
357 PRK14901 16S rRNA methyltransf 96.2 0.011 2.3E-07 65.9 7.6 118 475-597 250-403 (434)
358 PLN02232 ubiquinone biosynthes 96.2 0.0061 1.3E-07 58.5 4.7 72 510-584 3-83 (160)
359 PLN03075 nicotianamine synthas 96.1 0.032 7E-07 59.1 10.2 136 479-623 123-276 (296)
360 PLN02585 magnesium protoporphy 96.1 0.011 2.5E-07 63.1 6.8 95 481-581 146-248 (315)
361 COG0293 FtsJ 23S rRNA methylas 96.1 0.052 1.1E-06 54.4 11.0 115 203-324 27-159 (205)
362 PF02527 GidB: rRNA small subu 96.1 0.039 8.6E-07 54.5 9.9 139 455-602 25-171 (184)
363 KOG2361 Predicted methyltransf 96.0 0.0079 1.7E-07 61.3 4.8 98 482-583 74-184 (264)
364 PF05958 tRNA_U5-meth_tr: tRNA 96.0 0.018 3.9E-07 62.5 7.5 67 206-278 183-254 (352)
365 PF05185 PRMT5: PRMT5 arginine 95.9 0.017 3.6E-07 64.8 7.4 122 448-580 150-295 (448)
366 PLN02366 spermidine synthase 95.9 0.065 1.4E-06 57.2 11.5 101 478-580 90-204 (308)
367 PRK03612 spermidine synthase; 95.9 0.022 4.8E-07 65.0 8.4 120 479-601 297-439 (521)
368 PRK04148 hypothetical protein; 95.9 0.041 8.8E-07 51.7 8.6 93 481-607 18-111 (134)
369 PLN02781 Probable caffeoyl-CoA 95.8 0.02 4.3E-07 58.6 6.5 128 479-622 68-233 (234)
370 PRK15128 23S rRNA m(5)C1962 me 95.7 0.018 4E-07 63.5 6.5 123 481-605 222-368 (396)
371 PHA03411 putative methyltransf 95.7 0.015 3.2E-07 61.0 5.1 97 481-581 66-182 (279)
372 PF09445 Methyltransf_15: RNA 95.5 0.018 4E-07 55.8 4.7 67 225-294 2-77 (163)
373 PF03059 NAS: Nicotianamine sy 95.4 0.079 1.7E-06 55.6 9.3 102 223-324 121-230 (276)
374 PF01269 Fibrillarin: Fibrilla 95.3 0.15 3.2E-06 51.8 10.8 113 205-324 55-178 (229)
375 PF03291 Pox_MCEL: mRNA cappin 95.2 0.026 5.6E-07 60.8 5.4 129 457-592 40-198 (331)
376 PF01189 Nol1_Nop2_Fmu: NOL1/N 95.2 0.068 1.5E-06 56.3 8.4 114 212-327 77-222 (283)
377 smart00650 rADc Ribosomal RNA 95.2 0.024 5.2E-07 54.6 4.6 93 481-583 15-114 (169)
378 KOG1271 Methyltransferases [Ge 95.2 0.041 9E-07 54.1 6.1 115 482-598 70-197 (227)
379 PHA03412 putative methyltransf 95.2 0.033 7.2E-07 57.1 5.6 94 482-580 52-160 (241)
380 PF13679 Methyltransf_32: Meth 95.1 0.05 1.1E-06 51.1 6.5 43 222-266 25-72 (141)
381 PF05891 Methyltransf_PK: AdoM 95.1 0.057 1.2E-06 54.5 7.1 127 478-607 54-202 (218)
382 COG4262 Predicted spermidine s 95.1 0.16 3.5E-06 54.7 10.5 133 190-325 256-408 (508)
383 COG3897 Predicted methyltransf 94.9 0.16 3.5E-06 50.5 9.3 95 223-324 80-178 (218)
384 PRK13168 rumA 23S rRNA m(5)U19 94.8 0.17 3.7E-06 56.6 10.6 130 481-621 299-442 (443)
385 TIGR00479 rumA 23S rRNA (uraci 94.7 0.068 1.5E-06 59.4 7.2 111 482-602 295-416 (431)
386 PF04672 Methyltransf_19: S-ad 94.6 0.31 6.7E-06 50.9 11.0 102 223-324 69-190 (267)
387 PF13578 Methyltransf_24: Meth 94.5 0.013 2.8E-07 51.8 0.6 95 227-323 1-104 (106)
388 PLN02476 O-methyltransferase 94.4 0.089 1.9E-06 55.3 6.8 132 478-622 117-278 (278)
389 PF01596 Methyltransf_3: O-met 94.4 0.051 1.1E-06 54.6 4.6 133 477-622 43-205 (205)
390 KOG1269 SAM-dependent methyltr 94.4 0.054 1.2E-06 59.0 5.1 118 454-581 88-214 (364)
391 TIGR01444 fkbM_fam methyltrans 94.3 0.066 1.4E-06 49.6 5.0 41 225-266 1-41 (143)
392 COG4798 Predicted methyltransf 94.1 0.21 4.5E-06 49.7 8.1 105 217-325 45-167 (238)
393 COG2521 Predicted archaeal met 94.1 0.05 1.1E-06 55.4 3.9 120 481-604 136-275 (287)
394 COG5459 Predicted rRNA methyla 93.9 0.13 2.9E-06 55.1 6.7 113 209-325 102-226 (484)
395 PF05971 Methyltransf_10: Prot 93.8 0.29 6.4E-06 51.9 9.1 96 204-300 81-191 (299)
396 PF01135 PCMT: Protein-L-isoas 93.8 0.038 8.2E-07 55.7 2.4 97 468-581 64-171 (209)
397 COG4122 Predicted O-methyltran 93.7 0.14 2.9E-06 52.1 6.2 142 466-622 48-218 (219)
398 PF01739 CheR: CheR methyltran 93.5 0.12 2.6E-06 51.6 5.4 128 454-584 5-177 (196)
399 COG1064 AdhP Zn-dependent alco 93.5 0.4 8.7E-06 51.8 9.6 93 223-326 167-261 (339)
400 PRK03522 rumB 23S rRNA methylu 93.4 0.25 5.5E-06 52.6 8.1 129 481-621 175-314 (315)
401 PF10294 Methyltransf_16: Puta 93.3 0.079 1.7E-06 51.6 3.8 99 479-583 45-157 (173)
402 PF04816 DUF633: Family of unk 93.2 1.1 2.3E-05 45.2 11.6 115 226-364 1-122 (205)
403 PF07091 FmrO: Ribosomal RNA m 93.0 0.53 1.1E-05 48.7 9.2 128 223-360 106-238 (251)
404 COG4076 Predicted RNA methylas 92.7 0.32 7E-06 48.1 6.8 93 225-322 35-133 (252)
405 KOG2187 tRNA uracil-5-methyltr 92.7 0.14 3E-06 57.4 4.8 68 206-278 369-441 (534)
406 KOG3115 Methyltransferase-like 92.6 0.17 3.6E-06 50.7 4.7 98 225-324 63-183 (249)
407 PF12147 Methyltransf_20: Puta 92.5 0.14 3.1E-06 53.8 4.5 124 478-602 134-275 (311)
408 PRK00536 speE spermidine synth 92.5 0.33 7.1E-06 50.7 7.0 93 475-581 68-170 (262)
409 PF06962 rRNA_methylase: Putat 92.3 0.52 1.1E-05 44.7 7.4 97 250-358 2-114 (140)
410 PLN02823 spermine synthase 92.1 1 2.3E-05 48.7 10.6 100 479-581 103-219 (336)
411 PLN02672 methionine S-methyltr 92.1 0.27 5.8E-06 60.5 6.7 118 482-601 121-298 (1082)
412 KOG1499 Protein arginine N-met 92.0 0.21 4.5E-06 53.7 5.0 106 465-580 45-165 (346)
413 PRK11933 yebU rRNA (cytosine-C 91.9 0.41 9E-06 54.0 7.5 101 475-581 111-241 (470)
414 PF03492 Methyltransf_7: SAM d 91.8 0.88 1.9E-05 49.2 9.7 90 211-301 4-121 (334)
415 COG0286 HsdM Type I restrictio 91.8 1.6 3.4E-05 49.7 12.0 120 205-326 171-328 (489)
416 PLN02668 indole-3-acetate carb 91.7 0.86 1.9E-05 50.1 9.4 45 282-327 158-240 (386)
417 PF07757 AdoMet_MTase: Predict 91.3 0.3 6.6E-06 44.1 4.5 28 223-250 59-86 (112)
418 PF06080 DUF938: Protein of un 91.2 0.37 8.1E-06 48.4 5.6 134 482-621 28-204 (204)
419 COG2519 GCD14 tRNA(1-methylade 91.2 1.2 2.6E-05 46.2 9.3 109 474-599 91-213 (256)
420 KOG1122 tRNA and rRNA cytosine 91.0 0.8 1.7E-05 50.4 8.2 108 220-328 239-375 (460)
421 COG0357 GidB Predicted S-adeno 90.9 2.6 5.6E-05 42.8 11.2 157 454-619 43-209 (215)
422 PRK10909 rsmD 16S rRNA m(2)G96 90.8 0.37 8.1E-06 48.2 5.2 97 482-584 56-161 (199)
423 KOG1562 Spermidine synthase [A 90.8 0.35 7.5E-06 51.0 5.0 101 222-324 121-236 (337)
424 KOG2730 Methylase [General fun 90.5 0.69 1.5E-05 47.0 6.6 91 225-319 97-197 (263)
425 KOG2904 Predicted methyltransf 90.4 3.1 6.8E-05 43.7 11.4 159 457-621 129-327 (328)
426 KOG1331 Predicted methyltransf 90.3 0.3 6.5E-06 51.2 4.1 115 454-581 25-142 (293)
427 PRK13256 thiopurine S-methyltr 90.3 0.53 1.1E-05 48.1 5.8 95 482-580 46-161 (226)
428 COG2518 Pcm Protein-L-isoaspar 90.2 0.49 1.1E-05 47.7 5.4 100 464-581 60-168 (209)
429 PF08704 GCD14: tRNA methyltra 90.1 0.54 1.2E-05 48.7 5.7 113 474-601 37-166 (247)
430 cd08283 FDH_like_1 Glutathione 89.7 2.3 5.1E-05 46.2 10.7 98 224-324 186-306 (386)
431 TIGR00006 S-adenosyl-methyltra 89.6 1.5 3.1E-05 46.9 8.6 57 207-266 7-63 (305)
432 COG3129 Predicted SAM-dependen 89.4 0.81 1.8E-05 46.8 6.2 94 203-297 55-164 (292)
433 PHA01634 hypothetical protein 89.3 2.5 5.4E-05 39.6 8.7 69 222-292 28-98 (156)
434 PF01269 Fibrillarin: Fibrilla 88.8 1.3 2.9E-05 45.0 7.3 137 474-620 70-225 (229)
435 PF05724 TPMT: Thiopurine S-me 88.7 0.53 1.2E-05 47.8 4.4 120 481-605 39-189 (218)
436 PF06859 Bin3: Bicoid-interact 88.6 0.18 3.8E-06 45.7 0.7 39 286-324 1-44 (110)
437 KOG2793 Putative N2,N2-dimethy 88.1 3.5 7.6E-05 42.8 9.9 99 223-324 87-199 (248)
438 cd08254 hydroxyacyl_CoA_DH 6-h 88.1 3.2 7E-05 43.4 10.1 90 224-324 167-263 (338)
439 PF02005 TRM: N2,N2-dimethylgu 87.7 2.3 4.9E-05 46.8 8.8 98 223-325 50-155 (377)
440 KOG3115 Methyltransferase-like 87.5 1.2 2.6E-05 44.8 5.8 33 562-594 163-196 (249)
441 PRK11760 putative 23S rRNA C24 87.4 6.2 0.00013 42.9 11.6 91 476-581 210-304 (357)
442 PRK00274 ksgA 16S ribosomal RN 87.4 0.38 8.2E-06 50.3 2.5 40 481-523 44-83 (272)
443 TIGR00755 ksgA dimethyladenosi 87.2 0.59 1.3E-05 48.2 3.8 42 479-523 29-70 (253)
444 KOG2940 Predicted methyltransf 87.1 0.48 1E-05 48.3 2.9 97 479-581 72-173 (325)
445 PRK14896 ksgA 16S ribosomal RN 86.9 0.69 1.5E-05 47.9 4.1 63 481-549 31-98 (258)
446 KOG1975 mRNA cap methyltransfe 86.9 0.82 1.8E-05 48.8 4.6 62 541-603 195-259 (389)
447 PF03269 DUF268: Caenorhabditi 86.8 0.42 9.1E-06 46.3 2.2 44 284-327 61-114 (177)
448 cd00315 Cyt_C5_DNA_methylase C 86.5 1.8 3.8E-05 45.4 6.9 67 225-294 2-70 (275)
449 PRK10742 putative methyltransf 86.4 2.7 5.9E-05 43.5 8.0 86 210-298 76-176 (250)
450 KOG2920 Predicted methyltransf 86.2 0.59 1.3E-05 49.0 3.1 118 205-324 98-234 (282)
451 COG1889 NOP1 Fibrillarin-like 85.4 14 0.0003 37.4 11.9 113 204-324 57-180 (231)
452 TIGR02085 meth_trns_rumB 23S r 85.0 4.8 0.0001 44.1 9.7 108 481-602 235-352 (374)
453 PRK09880 L-idonate 5-dehydroge 85.0 3.9 8.5E-05 43.6 8.8 94 223-325 170-267 (343)
454 COG1189 Predicted rRNA methyla 84.7 8.1 0.00017 39.8 10.3 132 481-621 81-242 (245)
455 PF01555 N6_N4_Mtase: DNA meth 84.6 1.7 3.6E-05 42.9 5.4 53 207-265 179-231 (231)
456 PF10354 DUF2431: Domain of un 84.5 8.4 0.00018 37.4 10.0 96 229-325 3-126 (166)
457 PF04989 CmcI: Cephalosporin h 84.2 0.65 1.4E-05 46.8 2.2 100 223-324 33-147 (206)
458 COG1565 Uncharacterized conser 84.0 2 4.2E-05 46.8 5.9 79 185-266 42-128 (370)
459 PF03514 GRAS: GRAS domain fam 83.7 10 0.00022 41.7 11.4 100 224-323 112-243 (374)
460 KOG4589 Cell division protein 83.1 7.3 0.00016 38.9 8.8 94 223-324 70-184 (232)
461 PF13578 Methyltransf_24: Meth 82.9 0.4 8.6E-06 42.2 0.1 95 484-582 1-105 (106)
462 KOG2198 tRNA cytosine-5-methyl 82.2 7.8 0.00017 42.3 9.5 108 219-328 154-300 (375)
463 PRK11524 putative methyltransf 81.6 2.8 6.2E-05 44.0 6.0 55 209-266 195-249 (284)
464 KOG1099 SAM-dependent methyltr 81.6 1.5 3.2E-05 44.8 3.6 95 223-323 42-162 (294)
465 PF00107 ADH_zinc_N: Zinc-bind 81.1 3.2 7E-05 37.3 5.5 85 232-325 1-90 (130)
466 PLN02589 caffeoyl-CoA O-methyl 81.1 4.3 9.2E-05 42.1 6.9 133 477-622 77-246 (247)
467 COG0421 SpeE Spermidine syntha 80.5 4.7 0.0001 42.6 7.1 104 474-581 71-189 (282)
468 COG1092 Predicted SAM-dependen 80.3 6.4 0.00014 43.6 8.3 120 482-604 220-364 (393)
469 COG1889 NOP1 Fibrillarin-like 80.3 17 0.00037 36.8 10.4 138 474-622 73-229 (231)
470 PRK11524 putative methyltransf 79.8 1.5 3.2E-05 46.2 3.1 54 271-324 10-80 (284)
471 COG2263 Predicted RNA methylas 79.6 3.3 7.1E-05 41.3 5.1 83 481-566 47-132 (198)
472 TIGR02822 adh_fam_2 zinc-bindi 79.5 16 0.00035 38.9 11.0 87 224-325 167-255 (329)
473 COG2384 Predicted SAM-dependen 79.5 32 0.0007 35.1 12.3 128 209-364 7-141 (226)
474 PRK13699 putative methylase; P 79.2 3.6 7.9E-05 41.9 5.7 41 223-266 164-204 (227)
475 KOG2899 Predicted methyltransf 78.7 3.7 8.1E-05 42.4 5.4 41 541-581 165-208 (288)
476 COG1867 TRM1 N2,N2-dimethylgua 78.5 7.2 0.00016 42.6 7.8 97 223-325 53-155 (380)
477 COG4301 Uncharacterized conser 78.5 23 0.00051 36.9 11.0 100 223-324 79-193 (321)
478 PRK09424 pntA NAD(P) transhydr 78.5 12 0.00027 42.8 10.1 97 223-325 165-286 (509)
479 cd08230 glucose_DH Glucose deh 78.3 10 0.00022 40.5 9.1 93 223-324 173-269 (355)
480 PRK10611 chemotaxis methyltran 77.7 1.8 4E-05 45.8 3.1 43 541-584 222-264 (287)
481 PF02475 Met_10: Met-10+ like- 77.2 2 4.4E-05 43.1 3.1 93 474-578 98-198 (200)
482 PF04445 SAM_MT: Putative SAM- 77.2 5.6 0.00012 40.9 6.3 86 210-298 63-163 (234)
483 KOG4058 Uncharacterized conser 76.7 18 0.00039 34.8 8.9 82 209-294 61-148 (199)
484 PF01861 DUF43: Protein of unk 76.6 84 0.0018 32.6 14.5 96 222-323 44-148 (243)
485 PF07942 N2227: N2227-like pro 76.5 9.9 0.00021 40.0 8.0 44 560-603 180-239 (270)
486 cd05188 MDR Medium chain reduc 75.4 21 0.00046 35.5 10.0 93 223-325 135-233 (271)
487 KOG0822 Protein kinase inhibit 74.9 7.7 0.00017 44.2 7.0 115 208-323 352-477 (649)
488 KOG0024 Sorbitol dehydrogenase 74.3 17 0.00036 39.3 9.0 95 223-324 170-273 (354)
489 cd08245 CAD Cinnamyl alcohol d 74.3 25 0.00053 36.8 10.5 91 224-324 164-256 (330)
490 KOG3191 Predicted N6-DNA-methy 74.1 27 0.00058 34.9 9.7 125 480-607 44-194 (209)
491 PF01564 Spermine_synth: Sperm 74.1 34 0.00075 35.3 11.2 142 454-603 55-217 (246)
492 cd08234 threonine_DH_like L-th 74.1 26 0.00057 36.6 10.7 92 224-325 161-258 (334)
493 TIGR02987 met_A_Alw26 type II 73.3 25 0.00054 40.2 11.0 43 479-521 31-80 (524)
494 PTZ00338 dimethyladenosine tra 72.9 3.3 7.1E-05 44.0 3.4 66 475-548 34-107 (294)
495 KOG2539 Mitochondrial/chloropl 72.8 14 0.00031 41.5 8.3 102 223-325 201-316 (491)
496 cd08237 ribitol-5-phosphate_DH 72.7 16 0.00034 39.1 8.7 90 223-324 164-256 (341)
497 cd08232 idonate-5-DH L-idonate 72.7 19 0.00042 37.8 9.3 93 223-324 166-262 (339)
498 TIGR03451 mycoS_dep_FDH mycoth 72.7 20 0.00043 38.4 9.5 93 224-325 178-277 (358)
499 cd08281 liver_ADH_like1 Zinc-d 71.5 19 0.00042 38.8 9.1 91 225-324 194-290 (371)
500 PRK04338 N(2),N(2)-dimethylgua 71.3 4.7 0.0001 44.4 4.3 90 482-581 60-157 (382)
No 1
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=100.00 E-value=4.1e-151 Score=1214.71 Aligned_cols=500 Identities=64% Similarity=1.173 Sum_probs=486.3
Q ss_pred CccccCCchhhhhc--hHhhhhhhhCCCCCCCCccccccCCCCCCCCCCCCCCCccccccccCCCcchhhhhhcCccEee
Q 006834 110 DITPCQDPVRSRKF--DREMAKYRERHCPKSEELLRCLIPAPPKYKTPFKWPQSRDYAWYDNIPHKELSIEKAGQNWIQV 187 (629)
Q Consensus 110 ~y~pc~d~~~~~~~--~~~~~~~~~r~C~~~~~~~~clvp~p~~y~~P~~wP~s~~~~w~~n~p~~~L~~~k~~q~Wv~~ 187 (629)
|||||+|+.+++++ +++++++||||||+.+++++||||+|++|+.|++||+|||++||+|+||++|+.+|+.|||+++
T Consensus 1 dy~PC~D~~~~~~~~~~~~~~~~rERhCP~~~~~~~CLVp~P~gYk~P~~WP~SRd~iW~~Nvph~~L~~~K~~qnWv~~ 80 (506)
T PF03141_consen 1 DYIPCLDNSRAIKFLLSRERMEHRERHCPPPEERLRCLVPPPKGYKTPIPWPKSRDYIWYANVPHTKLAEEKADQNWVRV 80 (506)
T ss_pred CCcCCCCHHHHHhhccCcccccEeeccCcCCCCCCccccCCCccCCCCCCCCcccceeeecccCchHHhhhcccccceee
Confidence 79999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeeeecCCCCCCCCchHHHHHHHHhhcCc--cCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHH
Q 006834 188 EGHRFRFPGGGTTFPNGADAYIDNINELIPL--TGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALE 265 (629)
Q Consensus 188 ~g~~~~Fpgggt~f~~ga~~~i~~I~~lL~~--~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~e 265 (629)
+|++|.||||||+|++|+..|+++|.++++. ..+..|++||+|||+|+|+++|+++++.++++++.|.++.++|+|.|
T Consensus 81 ~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfale 160 (506)
T PF03141_consen 81 EGDKFRFPGGGTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALE 160 (506)
T ss_pred cCCEEEeCCCCccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhh
Confidence 9999999999999999999999999999998 67788999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEecCCCCCCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeCCCCccccccCccCcchhhhh
Q 006834 266 RGVPAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPPIHWKKYWRGWERTKEDLKQ 345 (629)
Q Consensus 266 rg~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P~~~w~~~~~~w~~~~e~l~~ 345 (629)
||+++.+.+...++|||++++||+|||+.|+++|..+.+.+|.|++|+|||||||++++|+.+ +++.++...
T Consensus 161 RGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~--------~r~~~~~~~ 232 (506)
T PF03141_consen 161 RGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY--------QRTDEDLEE 232 (506)
T ss_pred cCcchhhhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCccc--------ccchHHHHH
Confidence 999999988889999999999999999999999998888999999999999999999999987 366778889
Q ss_pred HHHHHHHHHHHhcceeecccCceEEEeccCCccccccccccCCCCCCCC-CCCCCCccccccccccccCccCCCcccccC
Q 006834 346 EQDTIEDIAKRLCWKKLIEKNDLAIWQKPINHIDCNKSKVVYKTPQICG-PDNPDTAWYKDMEACITPLPEVSSSDEVAG 424 (629)
Q Consensus 346 ~~~~ie~l~~~l~w~~v~~~~~~aiwqKp~~~~~c~~~r~~~~~p~lC~-~~~~d~~wy~~~~~ci~~~p~~~~~~~~~~ 424 (629)
+++.|++++++|||++++++++++|||||.++ +||.+|+..+.|++|+ ++|||++||++|++|||++|++.+ +.++
T Consensus 233 ~~~~~~~l~~~lCW~~va~~~~~aIwqKp~~~-~Cy~~r~~~~~pplC~~~~dpd~aWY~~l~~Cit~~p~~~~--~~~~ 309 (506)
T PF03141_consen 233 EWNAMEDLAKSLCWKKVAEKGDTAIWQKPTNN-SCYQKRKPGKSPPLCDSSDDPDAAWYVPLEACITPLPEVSS--EIAG 309 (506)
T ss_pred HHHHHHHHHHHHHHHHheeeCCEEEEeccCCc-hhhhhccCCCCCCCCCCCCCCcchhhcchhhhcCcCCcccc--cccc
Confidence 99999999999999999999999999999998 9999999889999999 899999999999999999998765 6788
Q ss_pred CccccCcccccCCCccccCCCCCCcchhhchhhHHHHHHHHHHHHHhhc-ccCCCCeeEEEeecccchhHHhhhhCCCeE
Q 006834 425 GALEKWPERAFSVPPRISSGSLSGITAEKLREDNELWKDRMTYYKKIDG-LFHKGRYRNVMDMNAYLGGFAAAMSKYPVW 503 (629)
Q Consensus 425 ~~~~~wp~rl~~~p~~~~~~~~~~~~~~~f~~d~~~w~~~v~~y~~~~~-~~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~ 503 (629)
+++++||+||+++|+||.+|++.|+++|.|++|+++|+++|++|++++. .|++++||||||||||||||||||.+++||
T Consensus 310 ~~~~~WP~RL~~~P~rl~~~~~~g~~~e~F~~Dt~~Wk~~V~~Y~~l~~~~i~~~~iRNVMDMnAg~GGFAAAL~~~~VW 389 (506)
T PF03141_consen 310 GWLPKWPERLNAVPPRLSSGSIPGISPEEFKEDTKHWKKRVSHYKKLLGLAIKWGRIRNVMDMNAGYGGFAAALIDDPVW 389 (506)
T ss_pred cCCCCChhhhccCchhhhcCCcCCCCHHHHHHHHHHHHHHHHHHHHhhcccccccceeeeeeecccccHHHHHhccCCce
Confidence 9999999999999999999999999999999999999999999999887 799999999999999999999999999999
Q ss_pred EEEecCCCCCCCchHHHHhhcccceeccccccCCCCCcccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 504 VMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAFSTYPRTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 504 ~mnv~~~~~~~~~l~~~~ergli~~~~~~~e~f~~yp~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
||||||+..+ |||++||||||||+||||||+|||||||||||||++|||.|++||++++||+||||||||||++||||+
T Consensus 390 VMNVVP~~~~-ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~ 468 (506)
T PF03141_consen 390 VMNVVPVSGP-NTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDT 468 (506)
T ss_pred EEEecccCCC-CcchhhhhcccchhccchhhccCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEecc
Confidence 9999999887 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCeEEEeecCCCCCCCceEEEEEe
Q 006834 584 VEMLVKIRSITEGMRWKSQIMDHESGPFNPEKILFAAK 621 (629)
Q Consensus 584 ~~~~~~~~~~~~~l~w~~~~~~~e~~~~~~e~~l~~~K 621 (629)
.+++.+|++|+++|||+++++|+|+||+++||||||||
T Consensus 469 ~~vl~~v~~i~~~lrW~~~~~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 469 VDVLEKVKKIAKSLRWEVRIHDTEDGPDGPEKILICQK 506 (506)
T ss_pred HHHHHHHHHHHHhCcceEEEEecCCCCCCCceEEEEEC
Confidence 99999999999999999999999999999999999998
No 2
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=99.96 E-value=4.2e-30 Score=278.14 Aligned_cols=192 Identities=18% Similarity=0.326 Sum_probs=148.8
Q ss_pred ccccccccCccCCCcccccCCccccCcccccCCCccccCCCCCCcchh----------------hchhhHHHHHHHHHHH
Q 006834 405 DMEACITPLPEVSSSDEVAGGALEKWPERAFSVPPRISSGSLSGITAE----------------KLREDNELWKDRMTYY 468 (629)
Q Consensus 405 ~~~~ci~~~p~~~~~~~~~~~~~~~wp~rl~~~p~~~~~~~~~~~~~~----------------~f~~d~~~w~~~v~~y 468 (629)
....|+.|.|.. -..+-+||+.-..+ |+++ ++.-... .|-.....+++++.+|
T Consensus 33 ~~~~CLVp~P~g-------Yk~P~~WP~SRd~i--W~~N--vph~~L~~~K~~qnWv~~~gd~~~FPgggt~F~~Ga~~Y 101 (506)
T PF03141_consen 33 ERLRCLVPPPKG-------YKTPIPWPKSRDYI--WYAN--VPHTKLAEEKADQNWVRVEGDKFRFPGGGTMFPHGADHY 101 (506)
T ss_pred CCCccccCCCcc-------CCCCCCCCccccee--eecc--cCchHHhhhcccccceeecCCEEEeCCCCccccCCHHHH
Confidence 456799888742 24578899887654 3332 2222111 1333344566788888
Q ss_pred HHhhc---cc--CCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcccceeccccccCCCCC-cc
Q 006834 469 KKIDG---LF--HKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAFSTYP-RT 542 (629)
Q Consensus 469 ~~~~~---~~--~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergli~~~~~~~e~f~~yp-~t 542 (629)
...+. ++ ..|+||++||+|||+|+|||+|.+++|.+|+++|.+.++++.|+++|||+..++........+|| ++
T Consensus 102 id~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp~~~ 181 (506)
T PF03141_consen 102 IDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFPSNA 181 (506)
T ss_pred HHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhccccccCCccc
Confidence 86554 23 55899999999999999999999999999999999999999999999999777765555566677 99
Q ss_pred cceeeccccccccCCCcCHHH------HHHHHhhcccCCcEEEEEeC----------HHHHHHHHHHHhcCCCeEEEeec
Q 006834 543 YDLIHASGVFSIYQDRCDITN------ILLEMDRILRPEGTVIFRDT----------VEMLVKIRSITEGMRWKSQIMDH 606 (629)
Q Consensus 543 ~Dl~H~~~~fs~~~~~c~~~~------~l~e~dRiLrPgG~~i~~d~----------~~~~~~~~~~~~~l~w~~~~~~~ 606 (629)
|||+|| +||.+.| +|+|+|||||||||||++.+ .+.+.+|++++++|||+.....
T Consensus 182 fDmvHc--------src~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~lCW~~va~~- 252 (506)
T PF03141_consen 182 FDMVHC--------SRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSLCWKKVAEK- 252 (506)
T ss_pred hhhhhc--------ccccccchhcccceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHHHHHHheee-
Confidence 999999 6666665 99999999999999999733 4679999999999999986642
Q ss_pred CCCCCCCceEEEEEecc
Q 006834 607 ESGPFNPEKILFAAKTY 623 (629)
Q Consensus 607 e~~~~~~e~~l~~~K~~ 623 (629)
..+.|.||+.
T Consensus 253 -------~~~aIwqKp~ 262 (506)
T PF03141_consen 253 -------GDTAIWQKPT 262 (506)
T ss_pred -------CCEEEEeccC
Confidence 3399999974
No 3
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.85 E-value=1.3e-20 Score=209.83 Aligned_cols=329 Identities=15% Similarity=0.135 Sum_probs=180.6
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC---CCeEEEEecCC--CCCCC
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG---VPAMIGVISSK--RLPYP 283 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg---~~~~~~v~d~~--~Lp~p 283 (629)
...+.+.+....+. +|||+|||+|.++..|++.+. .++++|+++.+++.+++.. .++.+.+.|.. .++++
T Consensus 26 ~~~il~~l~~~~~~--~vLDlGcG~G~~~~~la~~~~---~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~ 100 (475)
T PLN02336 26 RPEILSLLPPYEGK--SVLELGAGIGRFTGELAKKAG---QVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNIS 100 (475)
T ss_pred hhHHHhhcCccCCC--EEEEeCCCcCHHHHHHHhhCC---EEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCC
Confidence 34555666544333 899999999999999998864 4567799999999887542 35778888874 46788
Q ss_pred CCCeeEEEecCcccccccC-HHHHHHHHHhcccCCcEEEEEeCCCCccccccCccCcchhhhhHHHHHHHHHHHhcceee
Q 006834 284 ARAFDMAHCSGCLIPWYMY-DGLYLLEVDRVLRPGGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIEDIAKRLCWKKL 362 (629)
Q Consensus 284 d~sFDlV~~s~~L~h~~~d-~~~~L~el~RvLKPGG~liis~P~~~w~~~~~~w~~~~e~l~~~~~~ie~l~~~l~w~~v 362 (629)
+++||+|+|..+++|+..+ ...++.++.|+|||||++++............. ...+..+.. ...+..+...-.+...
T Consensus 101 ~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~-~~~~~~~~~-~~~~~~~f~~~~~~~~ 178 (475)
T PLN02336 101 DGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKR-KNNPTHYRE-PRFYTKVFKECHTRDE 178 (475)
T ss_pred CCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccc-cCCCCeecC-hHHHHHHHHHheeccC
Confidence 8999999999999888643 467999999999999999997532211100000 001111111 2223333333222222
Q ss_pred ccc-Cce-EEEeccCCccccccccccCCCCCCCCCCCCCCccccccccccccCccCCCcccccCCccccCcccccCCCcc
Q 006834 363 IEK-NDL-AIWQKPINHIDCNKSKVVYKTPQICGPDNPDTAWYKDMEACITPLPEVSSSDEVAGGALEKWPERAFSVPPR 440 (629)
Q Consensus 363 ~~~-~~~-aiwqKp~~~~~c~~~r~~~~~p~lC~~~~~d~~wy~~~~~ci~~~p~~~~~~~~~~~~~~~wp~rl~~~p~~ 440 (629)
... ..+ ..+-++++. |.. |...|..-+..=. +++.. + ......+=+|+.-.+
T Consensus 179 ~~~~~~~~~~~~~~~~~---~~~--------------~~~~~~~~~~~~~-~~~~~----~--~~~~~~~~~~~~y~~-- 232 (475)
T PLN02336 179 DGNSFELSLVGCKCIGA---YVK--------------NKKNQNQICWLWQ-KVSST----N--DKGFQRFLDNVQYKS-- 232 (475)
T ss_pred CCCEEEEEEEEeechhh---hhh--------------ccCCcceEEEEEE-eecCC----c--chhHHHHhhhhcccc--
Confidence 111 001 111122111 111 1111111110000 00000 0 011122222211001
Q ss_pred ccCCCCCCcc-hhhchhhHHHHHHHHHHHHHhhcccCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHH
Q 006834 441 ISSGSLSGIT-AEKLREDNELWKDRMTYYKKIDGLFHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGA 519 (629)
Q Consensus 441 ~~~~~~~~~~-~~~f~~d~~~w~~~v~~y~~~~~~~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~ 519 (629)
+|+. .+.|-.....+...|..-..++..+....-..|||+|||.|+++..|++.. -.+|+.+|.++.++..
T Consensus 233 ------~~i~~~~~f~g~~~~v~~~v~~te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~ 304 (475)
T PLN02336 233 ------SGILRYERVFGEGFVSTGGLETTKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISF 304 (475)
T ss_pred ------ccHHHHHHHhCCCCCCCchHHHHHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHH
Confidence 1110 111211112222233322333332222233569999999999999988752 1255666666678877
Q ss_pred HHhhc--c---cceec-cccccCCCCC-cccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 520 IYERG--L---IGTYQ-DWCEAFSTYP-RTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 520 ~~erg--l---i~~~~-~~~e~f~~yp-~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
+.++- + +...+ |+.+ .++| .+||+|.+.+++-... +.+.+|.|+.|+|||||.++|.|.
T Consensus 305 A~~~~~~~~~~v~~~~~d~~~--~~~~~~~fD~I~s~~~l~h~~---d~~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 305 ALERAIGRKCSVEFEVADCTK--KTYPDNSFDVIYSRDTILHIQ---DKPALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred HHHHhhcCCCceEEEEcCccc--CCCCCCCEEEEEECCcccccC---CHHHHHHHHHHHcCCCeEEEEEEe
Confidence 76542 2 22222 3322 2355 7899999977765443 458899999999999999999863
No 4
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.68 E-value=2.6e-16 Score=159.65 Aligned_cols=115 Identities=24% Similarity=0.285 Sum_probs=97.7
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCC-----eEEEEecCCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVP-----AMIGVISSKRL 280 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~-----~~~~v~d~~~L 280 (629)
..+.+.+.+.+...+|. +|||||||||.++..+++... ...++++|+|+.|++.|+++..+ +.|+++|++.|
T Consensus 37 ~~Wr~~~i~~~~~~~g~--~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~L 113 (238)
T COG2226 37 RLWRRALISLLGIKPGD--KVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENL 113 (238)
T ss_pred HHHHHHHHHhhCCCCCC--EEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhC
Confidence 34455555665554444 999999999999999999764 44778889999999999988543 78999999999
Q ss_pred CCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 281 PYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 281 p~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
||+|++||+|.+++.|.+.. +...+|+|++|||||||.+++..
T Consensus 114 Pf~D~sFD~vt~~fglrnv~-d~~~aL~E~~RVlKpgG~~~vle 156 (238)
T COG2226 114 PFPDNSFDAVTISFGLRNVT-DIDKALKEMYRVLKPGGRLLVLE 156 (238)
T ss_pred CCCCCccCEEEeeehhhcCC-CHHHHHHHHHHhhcCCeEEEEEE
Confidence 99999999999999997776 99999999999999999988864
No 5
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.62 E-value=1.9e-15 Score=129.30 Aligned_cols=92 Identities=29% Similarity=0.439 Sum_probs=79.1
Q ss_pred EEeCCCCchHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHcCC--CeEEEEecCCCCCCCCCCeeEEEecCcccccccCH
Q 006834 227 VDTGCGVASWGAYLLKR-DILTMSFARRDTHEAQVQFALERGV--PAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMYD 303 (629)
Q Consensus 227 LDIGCGtG~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~erg~--~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d~ 303 (629)
||+|||+|.++..|+++ +. .++++|+++++++.++++.. ...+...+...+|+++++||+|++..+++|+ +++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~---~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~-~~~ 76 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGA---SVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL-EDP 76 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTC---EEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS-SHH
T ss_pred CEecCcCCHHHHHHHhccCC---EEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec-cCH
Confidence 89999999999999999 44 56777999999999998753 4568999999999999999999999999888 588
Q ss_pred HHHHHHHHhcccCCcEEEE
Q 006834 304 GLYLLEVDRVLRPGGYWIL 322 (629)
Q Consensus 304 ~~~L~el~RvLKPGG~lii 322 (629)
..+++|+.|+|||||++++
T Consensus 77 ~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 77 EAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHcCcCeEEeC
Confidence 9999999999999999986
No 6
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.62 E-value=1.5e-15 Score=154.50 Aligned_cols=111 Identities=23% Similarity=0.311 Sum_probs=81.7
Q ss_pred HHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC-----CCeEEEEecCCCCCCCCC
Q 006834 211 NINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG-----VPAMIGVISSKRLPYPAR 285 (629)
Q Consensus 211 ~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg-----~~~~~~v~d~~~Lp~pd~ 285 (629)
.+.+.+...++. +|||+|||||.++..++++......++++|+|+.|++.|+++. .++.+.++|++.+|++++
T Consensus 38 ~~~~~~~~~~g~--~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~ 115 (233)
T PF01209_consen 38 KLIKLLGLRPGD--RVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDN 115 (233)
T ss_dssp HHHHHHT--S----EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT
T ss_pred HHHhccCCCCCC--EEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCC
Confidence 444444444444 9999999999999999887433346788899999999999762 378999999999999999
Q ss_pred CeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 286 AFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 286 sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
+||+|+|++.+++.+ +....|+|++|+|||||.+++..
T Consensus 116 sfD~v~~~fglrn~~-d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 116 SFDAVTCSFGLRNFP-DRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp -EEEEEEES-GGG-S-SHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ceeEEEHHhhHHhhC-CHHHHHHHHHHHcCCCeEEEEee
Confidence 999999999997776 88999999999999999999864
No 7
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.59 E-value=1.4e-14 Score=149.66 Aligned_cols=111 Identities=18% Similarity=0.072 Sum_probs=91.2
Q ss_pred HHHhhcCccCCCCCeEEEeCCCCchHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHcC--------CCeEEEEecCCCCC
Q 006834 211 NINELIPLTGGNIRTAVDTGCGVASWGAYLLKR-DILTMSFARRDTHEAQVQFALERG--------VPAMIGVISSKRLP 281 (629)
Q Consensus 211 ~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~erg--------~~~~~~v~d~~~Lp 281 (629)
.+.+.+...++ .+|||+|||+|.++..|+++ +.. ..++++|+|++|++.|+++. .++.+.++|...+|
T Consensus 64 ~~~~~~~~~~~--~~VLDlGcGtG~~~~~la~~~~~~-~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp 140 (261)
T PLN02233 64 MAVSWSGAKMG--DRVLDLCCGSGDLAFLLSEKVGSD-GKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLP 140 (261)
T ss_pred HHHHHhCCCCC--CEEEEECCcCCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCC
Confidence 33444444443 48999999999999988876 332 25678899999999998652 35788999999999
Q ss_pred CCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 282 YPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 282 ~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
+++++||+|+++.+++|+. ++..+++|+.|+|||||++++...
T Consensus 141 ~~~~sfD~V~~~~~l~~~~-d~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 141 FDDCYFDAITMGYGLRNVV-DRLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred CCCCCEeEEEEecccccCC-CHHHHHHHHHHHcCcCcEEEEEEC
Confidence 9999999999999997776 899999999999999999999853
No 8
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.55 E-value=1.6e-14 Score=145.06 Aligned_cols=103 Identities=20% Similarity=0.243 Sum_probs=89.9
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCCeEEEEecCCCCCCCCCCeeEEEecCcccc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GVPAMIGVISSKRLPYPARAFDMAHCSGCLIP 298 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h 298 (629)
+.+|||||||-|.++..|++.|.. ++++|+++.+|+.|+.+ +..+.+.+...+.+....++||+|+|..+++|
T Consensus 60 g~~vLDvGCGgG~Lse~mAr~Ga~---VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 60 GLRVLDVGCGGGILSEPLARLGAS---VTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCeEEEecCCccHhhHHHHHCCCe---eEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 448999999999999999999964 56669999999999854 45666777777777766689999999999999
Q ss_pred cccCHHHHHHHHHhcccCCcEEEEEeCCCCc
Q 006834 299 WYMYDGLYLLEVDRVLRPGGYWILSGPPIHW 329 (629)
Q Consensus 299 ~~~d~~~~L~el~RvLKPGG~liis~P~~~w 329 (629)
++ +++.+++.+.+++||||.+++++++.++
T Consensus 137 v~-dp~~~~~~c~~lvkP~G~lf~STinrt~ 166 (243)
T COG2227 137 VP-DPESFLRACAKLVKPGGILFLSTINRTL 166 (243)
T ss_pred cC-CHHHHHHHHHHHcCCCcEEEEeccccCH
Confidence 99 9999999999999999999999887554
No 9
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.53 E-value=8.4e-14 Score=142.45 Aligned_cols=114 Identities=21% Similarity=0.302 Sum_probs=94.9
Q ss_pred HHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCCC
Q 006834 207 AYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARA 286 (629)
Q Consensus 207 ~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~s 286 (629)
...+.+.+.++... ..+|||+|||+|.++..|++.+. .++++|+|+.|++.|+++.....+.++|...+|+++++
T Consensus 29 ~~a~~l~~~l~~~~--~~~vLDiGcG~G~~~~~l~~~~~---~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~ 103 (251)
T PRK10258 29 QSADALLAMLPQRK--FTHVLDAGCGPGWMSRYWRERGS---QVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATAT 103 (251)
T ss_pred HHHHHHHHhcCccC--CCeEEEeeCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCc
Confidence 34455566665432 44899999999999999988765 45677999999999998876667888899999999999
Q ss_pred eeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeCC
Q 006834 287 FDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPP 326 (629)
Q Consensus 287 FDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P~ 326 (629)
||+|+++.++ ||..++..+|.++.|+|||||.++++.+.
T Consensus 104 fD~V~s~~~l-~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~ 142 (251)
T PRK10258 104 FDLAWSNLAV-QWCGNLSTALRELYRVVRPGGVVAFTTLV 142 (251)
T ss_pred EEEEEECchh-hhcCCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 9999999988 56668999999999999999999998753
No 10
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.51 E-value=1.4e-13 Score=146.15 Aligned_cols=138 Identities=14% Similarity=0.111 Sum_probs=104.2
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC------CCeEEEEecCCCCCCCCCCeeEEEecCcc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG------VPAMIGVISSKRLPYPARAFDMAHCSGCL 296 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg------~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L 296 (629)
+.+|||||||+|.++..|++.+. .++++|+++++++.|+++. ..+.+.+.+...+++++++||+|+|..++
T Consensus 132 g~~ILDIGCG~G~~s~~La~~g~---~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEPLARMGA---TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCEEEEeeCCCCHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 45899999999999999998765 4567799999999998652 25778888888888888899999999999
Q ss_pred cccccCHHHHHHHHHhcccCCcEEEEEeCCCCccccc---------cCccCcc-hh--hhhHHHHHHHHHHHhcceeecc
Q 006834 297 IPWYMYDGLYLLEVDRVLRPGGYWILSGPPIHWKKYW---------RGWERTK-ED--LKQEQDTIEDIAKRLCWKKLIE 364 (629)
Q Consensus 297 ~h~~~d~~~~L~el~RvLKPGG~liis~P~~~w~~~~---------~~w~~~~-e~--l~~~~~~ie~l~~~l~w~~v~~ 364 (629)
+|+. ++..++.++.++|||||.++++.++....... ..|-... +. .....+++..+++..+++.+..
T Consensus 209 eHv~-d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~ 287 (322)
T PLN02396 209 EHVA-NPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEM 287 (322)
T ss_pred HhcC-CHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEE
Confidence 9988 88999999999999999999998755421100 0111111 10 0123456777888888766654
No 11
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.50 E-value=8.6e-14 Score=130.98 Aligned_cols=148 Identities=22% Similarity=0.403 Sum_probs=104.3
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPAR 285 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~ 285 (629)
+.+.+.+.++.+. .....+|||+|||+|.++..|++.+. .++++|+++.+++. ........+....+.+++
T Consensus 7 ~~~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~---~~~g~D~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 77 (161)
T PF13489_consen 7 RAYADLLERLLPR-LKPGKRVLDIGCGTGSFLRALAKRGF---EVTGVDISPQMIEK-----RNVVFDNFDAQDPPFPDG 77 (161)
T ss_dssp HCHHHHHHHHHTC-TTTTSEEEEESSTTSHHHHHHHHTTS---EEEEEESSHHHHHH-----TTSEEEEEECHTHHCHSS
T ss_pred HHHHHHHHHHhcc-cCCCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHhh-----hhhhhhhhhhhhhhcccc
Confidence 3445566666542 12344899999999999999988877 56677999999988 333444444445556789
Q ss_pred CeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeCCCCc--cccccCc--cCc--chhhhhHHHHHHHHHHHhcc
Q 006834 286 AFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPPIHW--KKYWRGW--ERT--KEDLKQEQDTIEDIAKRLCW 359 (629)
Q Consensus 286 sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P~~~w--~~~~~~w--~~~--~e~l~~~~~~ie~l~~~l~w 359 (629)
+||+|+|+.+++|.. ++..+|.++.++|||||+++++.+.... ......| ... ........+.+..+++..++
T Consensus 78 ~fD~i~~~~~l~~~~-d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~ 156 (161)
T PF13489_consen 78 SFDLIICNDVLEHLP-DPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGF 156 (161)
T ss_dssp SEEEEEEESSGGGSS-HHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTE
T ss_pred chhhHhhHHHHhhcc-cHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCC
Confidence 999999999998888 7999999999999999999999886531 1111111 111 11223345668888888887
Q ss_pred eeec
Q 006834 360 KKLI 363 (629)
Q Consensus 360 ~~v~ 363 (629)
+.+.
T Consensus 157 ~iv~ 160 (161)
T PF13489_consen 157 EIVE 160 (161)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6553
No 12
>PLN02244 tocopherol O-methyltransferase
Probab=99.49 E-value=2.2e-13 Score=146.04 Aligned_cols=116 Identities=19% Similarity=0.223 Sum_probs=93.6
Q ss_pred HHHHHHHHhhcCcc---CCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C--CCeEEEEec
Q 006834 206 DAYIDNINELIPLT---GGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G--VPAMIGVIS 276 (629)
Q Consensus 206 ~~~i~~I~~lL~~~---~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g--~~~~~~v~d 276 (629)
...++.+.+.+... ...+.+|||||||+|.++..|+++. ...++++|+|+.|++.|+++ + .++.+.++|
T Consensus 99 ~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D 176 (340)
T PLN02244 99 IRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVAD 176 (340)
T ss_pred HHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcC
Confidence 33455555555431 1234589999999999999999863 12556779999999988764 3 358899999
Q ss_pred CCCCCCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 277 SKRLPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 277 ~~~Lp~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
...+|+++++||+|++..+++|+. +...++.++.|+|||||.|++..
T Consensus 177 ~~~~~~~~~~FD~V~s~~~~~h~~-d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 177 ALNQPFEDGQFDLVWSMESGEHMP-DKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred cccCCCCCCCccEEEECCchhccC-CHHHHHHHHHHHcCCCcEEEEEE
Confidence 999999999999999999998987 78899999999999999999985
No 13
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.49 E-value=2.4e-13 Score=140.77 Aligned_cols=113 Identities=17% Similarity=0.210 Sum_probs=93.0
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC---CCeEEEEecCCCCCCCCC
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG---VPAMIGVISSKRLPYPAR 285 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg---~~~~~~v~d~~~Lp~pd~ 285 (629)
.+.+.+.+...++. +|||||||+|..+..|++.. ...++++|+|+.+++.|+++. .++.+...|....+++++
T Consensus 41 ~~~~l~~l~l~~~~--~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~ 116 (263)
T PTZ00098 41 TTKILSDIELNENS--KVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPEN 116 (263)
T ss_pred HHHHHHhCCCCCCC--EEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCC
Confidence 45555666655554 89999999999999988652 235677899999999999864 357888888888899999
Q ss_pred CeeEEEecCccccccc-CHHHHHHHHHhcccCCcEEEEEeC
Q 006834 286 AFDMAHCSGCLIPWYM-YDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 286 sFDlV~~s~~L~h~~~-d~~~~L~el~RvLKPGG~liis~P 325 (629)
+||+|++..+++|+.. +...+++++.++|||||+|+++.+
T Consensus 117 ~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 117 TFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred CeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 9999999988888863 578899999999999999999864
No 14
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.47 E-value=4.5e-12 Score=142.64 Aligned_cols=291 Identities=13% Similarity=0.083 Sum_probs=156.7
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC--CeEEEEecCCCCCCCCCCeeEEEecCcc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV--PAMIGVISSKRLPYPARAFDMAHCSGCL 296 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~~~Lp~pd~sFDlV~~s~~L 296 (629)
..+|||+|||+|.++..++..... ..++++|+|+.+++.|+++ +. .+.+..+|... +++.++||+|+|+..+
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~-~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPY 216 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPN-ANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPY 216 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCC-CeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCC
Confidence 348999999999999999876422 2567789999999999875 32 46667666532 2345689999996543
Q ss_pred ccccc---------------------C----HHHHHHHHHhcccCCcEEEEEeCCCCccccccCccCcchhhhhHHHHHH
Q 006834 297 IPWYM---------------------Y----DGLYLLEVDRVLRPGGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIE 351 (629)
Q Consensus 297 ~h~~~---------------------d----~~~~L~el~RvLKPGG~liis~P~~~w~~~~~~w~~~~e~l~~~~~~ie 351 (629)
..... + ...++.++.++|+|||.+++..... ..+.+.
T Consensus 217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~------------------q~~~v~ 278 (506)
T PRK01544 217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFK------------------QEEAVT 278 (506)
T ss_pred CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCc------------------hHHHHH
Confidence 22110 0 1236778889999999999874210 123355
Q ss_pred HHHHHhcceeecccCceEEEeccCCccccccccccCCCCCCCCCCCCCCccccccccccccCccCCCcccccCCccccCc
Q 006834 352 DIAKRLCWKKLIEKNDLAIWQKPINHIDCNKSKVVYKTPQICGPDNPDTAWYKDMEACITPLPEVSSSDEVAGGALEKWP 431 (629)
Q Consensus 352 ~l~~~l~w~~v~~~~~~aiwqKp~~~~~c~~~r~~~~~p~lC~~~~~d~~wy~~~~~ci~~~p~~~~~~~~~~~~~~~wp 431 (629)
+++...+|+.+. + .|.++.. .| |- .--..++.. ..+ ...|..+.+=.
T Consensus 279 ~~~~~~g~~~~~------~-~~D~~g~----~R--------~v---------~~~~~~~~r-s~~----rr~g~~~~~~q 325 (506)
T PRK01544 279 QIFLDHGYNIES------V-YKDLQGH----SR--------VI---------LISPINLNR-SYA----RRIGKSLSGVQ 325 (506)
T ss_pred HHHHhcCCCceE------E-EecCCCC----ce--------EE---------EeccccCCc-cee----ccCCCCCCHHH
Confidence 555555553221 1 1222110 00 00 000011110 000 00000000000
Q ss_pred ccccCCCccccCCCCCCcchhhchhhHHHHHHHHHHHHHhhcccCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCC
Q 006834 432 ERAFSVPPRISSGSLSGITAEKLREDNELWKDRMTYYKKIDGLFHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFH 511 (629)
Q Consensus 432 ~rl~~~p~~~~~~~~~~~~~~~f~~d~~~w~~~v~~y~~~~~~~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~ 511 (629)
.+.|...-..|.=-...+-...-..+||+|||.|.|.++++...=- .|++.++
T Consensus 326 --------------------------~~~~e~~~p~~~i~~eklf~~~~p~~lEIG~G~G~~~~~~A~~~p~-~~~iGiE 378 (506)
T PRK01544 326 --------------------------QNLLDNELPKYLFSKEKLVNEKRKVFLEIGFGMGEHFINQAKMNPD-ALFIGVE 378 (506)
T ss_pred --------------------------HHHHHhhhhhhCCCHHHhCCCCCceEEEECCCchHHHHHHHHhCCC-CCEEEEE
Confidence 0011110000000000011223467999999999999999865210 1444444
Q ss_pred CCC----CchHHHHhhcccceeccccccC----CCCC-cccceeeccccccc-------cCCCcCHHHHHHHHhhcccCC
Q 006834 512 SNP----DTLGAIYERGLIGTYQDWCEAF----STYP-RTYDLIHASGVFSI-------YQDRCDITNILLEMDRILRPE 575 (629)
Q Consensus 512 ~~~----~~l~~~~ergli~~~~~~~e~f----~~yp-~t~Dl~H~~~~fs~-------~~~~c~~~~~l~e~dRiLrPg 575 (629)
-.. ..+..+.++||-. +.-.|..+ ..+| .+.|-||. .|.. .+.|=--+..|.++-|+|+||
T Consensus 379 ~~~~~~~~~~~~~~~~~l~N-~~~~~~~~~~~~~~~~~~sv~~i~i--~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~g 455 (506)
T PRK01544 379 VYLNGVANVLKLAGEQNITN-FLLFPNNLDLILNDLPNNSLDGIYI--LFPDPWIKNKQKKKRIFNKERLKILQDKLKDN 455 (506)
T ss_pred eeHHHHHHHHHHHHHcCCCe-EEEEcCCHHHHHHhcCcccccEEEE--ECCCCCCCCCCccccccCHHHHHHHHHhcCCC
Confidence 332 2345556677621 22233322 3366 88998887 5652 223333467999999999999
Q ss_pred cEEEE-EeCHHHHHHHHHHHhc
Q 006834 576 GTVIF-RDTVEMLVKIRSITEG 596 (629)
Q Consensus 576 G~~i~-~d~~~~~~~~~~~~~~ 596 (629)
|.+.+ ||..+....+...+..
T Consensus 456 G~i~~~TD~~~y~~~~~~~~~~ 477 (506)
T PRK01544 456 GNLVFASDIENYFYEAIELIQQ 477 (506)
T ss_pred CEEEEEcCCHHHHHHHHHHHHh
Confidence 99888 5777766665555443
No 15
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.46 E-value=4.2e-13 Score=137.86 Aligned_cols=109 Identities=21% Similarity=0.209 Sum_probs=88.5
Q ss_pred HHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCCCeeE
Q 006834 210 DNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDM 289 (629)
Q Consensus 210 ~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~sFDl 289 (629)
..+.+.+....+ .+|||+|||+|.++..|+++.. ...++++|+|+.|++.|++++ +.+.++|...++ ++++||+
T Consensus 19 ~~ll~~l~~~~~--~~vLDlGcG~G~~~~~l~~~~p-~~~v~gvD~s~~~~~~a~~~~--~~~~~~d~~~~~-~~~~fD~ 92 (255)
T PRK14103 19 YDLLARVGAERA--RRVVDLGCGPGNLTRYLARRWP-GAVIEALDSSPEMVAAARERG--VDARTGDVRDWK-PKPDTDV 92 (255)
T ss_pred HHHHHhCCCCCC--CEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHhcC--CcEEEcChhhCC-CCCCceE
Confidence 445555554444 4899999999999999998743 235678899999999998875 567778887764 5679999
Q ss_pred EEecCcccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 290 AHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 290 V~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
|+|+.+++|+. ++..+++++.++|||||++++..+
T Consensus 93 v~~~~~l~~~~-d~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 93 VVSNAALQWVP-EHADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred EEEehhhhhCC-CHHHHHHHHHHhCCCCcEEEEEcC
Confidence 99999996665 889999999999999999999864
No 16
>PRK05785 hypothetical protein; Provisional
Probab=99.44 E-value=7.9e-13 Score=133.99 Aligned_cols=90 Identities=20% Similarity=0.108 Sum_probs=77.6
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCCCeeEEEecCcccccccC
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMY 302 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d 302 (629)
+.+|||+|||+|.++..|++.. ...++++|+|++|++.|+++. .+.+++...+|+++++||+|+++.+++|+. +
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~---~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~-d 125 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD---DKVVGSFEALPFRDKSFDVVMSSFALHASD-N 125 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc---ceEEechhhCCCCCCCEEEEEecChhhccC-C
Confidence 3489999999999999999874 125678899999999998864 356788999999999999999999997665 8
Q ss_pred HHHHHHHHHhcccCCc
Q 006834 303 DGLYLLEVDRVLRPGG 318 (629)
Q Consensus 303 ~~~~L~el~RvLKPGG 318 (629)
+..+++|+.|+|||.+
T Consensus 126 ~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 126 IEKVIAEFTRVSRKQV 141 (226)
T ss_pred HHHHHHHHHHHhcCce
Confidence 9999999999999953
No 17
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.44 E-value=7.4e-13 Score=135.94 Aligned_cols=112 Identities=21% Similarity=0.219 Sum_probs=90.2
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCCCee
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFD 288 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~sFD 288 (629)
...+...+...++ .+|||+|||+|.++..|++... ...++++|+|+.|++.|+++..++.+...|...+. ++++||
T Consensus 20 ~~~ll~~~~~~~~--~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD 95 (258)
T PRK01683 20 ARDLLARVPLENP--RYVVDLGCGPGNSTELLVERWP-AARITGIDSSPAMLAEARSRLPDCQFVEADIASWQ-PPQALD 95 (258)
T ss_pred HHHHHhhCCCcCC--CEEEEEcccCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhCCCCeEEECchhccC-CCCCcc
Confidence 4444455544433 4899999999999999998743 23567889999999999998777888888887664 456999
Q ss_pred EEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 289 MAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 289 lV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
+|+++.++++. .+...++.++.++|||||.+++..|
T Consensus 96 ~v~~~~~l~~~-~d~~~~l~~~~~~LkpgG~~~~~~~ 131 (258)
T PRK01683 96 LIFANASLQWL-PDHLELFPRLVSLLAPGGVLAVQMP 131 (258)
T ss_pred EEEEccChhhC-CCHHHHHHHHHHhcCCCcEEEEECC
Confidence 99999999555 4888999999999999999999864
No 18
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.43 E-value=1.3e-12 Score=131.60 Aligned_cols=116 Identities=19% Similarity=0.200 Sum_probs=92.9
Q ss_pred HHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC-----CCeEEEEecCCCCC
Q 006834 207 AYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG-----VPAMIGVISSKRLP 281 (629)
Q Consensus 207 ~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg-----~~~~~~v~d~~~Lp 281 (629)
.+.+.+.+.+...++. +|||+|||+|.++..+++.......++++|+++++++.|+++. .++.+..+|...++
T Consensus 32 ~~~~~~l~~l~~~~~~--~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~ 109 (231)
T TIGR02752 32 KWRKDTMKRMNVQAGT--SALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELP 109 (231)
T ss_pred HHHHHHHHhcCCCCCC--EEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCC
Confidence 3345566666655444 8999999999999999886322235778899999999998652 25778888888888
Q ss_pred CCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 282 YPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 282 ~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
+++++||+|++..++++.. +...++.++.++|+|||++++..+
T Consensus 110 ~~~~~fD~V~~~~~l~~~~-~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 110 FDDNSFDYVTIGFGLRNVP-DYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred CCCCCccEEEEecccccCC-CHHHHHHHHHHHcCcCeEEEEEEC
Confidence 8889999999999886655 788999999999999999998754
No 19
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.43 E-value=5.9e-13 Score=136.88 Aligned_cols=101 Identities=18% Similarity=0.044 Sum_probs=84.8
Q ss_pred CCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C--CCeEEEEecCCCCC-CCCCCeeEEEecC
Q 006834 222 NIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G--VPAMIGVISSKRLP-YPARAFDMAHCSG 294 (629)
Q Consensus 222 ~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g--~~~~~~v~d~~~Lp-~pd~sFDlV~~s~ 294 (629)
.+.+|||+|||+|.++..|++.+. .++++|+|++|++.|+++ + .++.+.+++...++ +++++||+|+|..
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~---~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGH---QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA 120 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh
Confidence 345899999999999999999876 456679999999999875 2 24678888877664 5678999999999
Q ss_pred cccccccCHHHHHHHHHhcccCCcEEEEEeCC
Q 006834 295 CLIPWYMYDGLYLLEVDRVLRPGGYWILSGPP 326 (629)
Q Consensus 295 ~L~h~~~d~~~~L~el~RvLKPGG~liis~P~ 326 (629)
+++|+. ++..++.++.++|||||++++...+
T Consensus 121 vl~~~~-~~~~~l~~~~~~LkpgG~l~i~~~n 151 (255)
T PRK11036 121 VLEWVA-DPKSVLQTLWSVLRPGGALSLMFYN 151 (255)
T ss_pred HHHhhC-CHHHHHHHHHHHcCCCeEEEEEEEC
Confidence 997665 8889999999999999999987544
No 20
>PRK08317 hypothetical protein; Provisional
Probab=99.42 E-value=4.6e-12 Score=126.72 Aligned_cols=118 Identities=27% Similarity=0.348 Sum_probs=97.4
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCCeEEEEecCCCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GVPAMIGVISSKRLP 281 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~~~~~v~d~~~Lp 281 (629)
..+.+.+.+.+...++. +|||+|||+|.++..+++.......++++|+++.+++.|+++ ..++.+...|...++
T Consensus 5 ~~~~~~~~~~~~~~~~~--~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~ 82 (241)
T PRK08317 5 RRYRARTFELLAVQPGD--RVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLP 82 (241)
T ss_pred HHHHHHHHHHcCCCCCC--EEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCC
Confidence 44556666766665544 899999999999999988642223577889999999999876 345788888888888
Q ss_pred CCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeCC
Q 006834 282 YPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPP 326 (629)
Q Consensus 282 ~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P~ 326 (629)
+++++||+|++..+++|+. ++..++.++.++|||||++++..+.
T Consensus 83 ~~~~~~D~v~~~~~~~~~~-~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 83 FPDGSFDAVRSDRVLQHLE-DPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred CCCCCceEEEEechhhccC-CHHHHHHHHHHHhcCCcEEEEEecC
Confidence 8889999999999998877 8899999999999999999998764
No 21
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.42 E-value=2.1e-12 Score=127.85 Aligned_cols=107 Identities=16% Similarity=0.235 Sum_probs=81.6
Q ss_pred HHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCCeEEEEecCCCCCCCCCC
Q 006834 211 NINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GVPAMIGVISSKRLPYPARA 286 (629)
Q Consensus 211 ~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~~~~~v~d~~~Lp~pd~s 286 (629)
.+.+.+.... +.+|||+|||+|.++.+|++++.. ++++|+|+.+++.++++ +.++.+.+.|....+++ ++
T Consensus 21 ~l~~~~~~~~--~~~vLDiGcG~G~~a~~la~~g~~---V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~ 94 (195)
T TIGR00477 21 AVREAVKTVA--PCKTLDLGCGQGRNSLYLSLAGYD---VRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALN-ED 94 (195)
T ss_pred HHHHHhccCC--CCcEEEeCCCCCHHHHHHHHCCCe---EEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcccc-CC
Confidence 3334444333 348999999999999999998764 56669999999987653 45566677776655654 58
Q ss_pred eeEEEecCccccccc-CHHHHHHHHHhcccCCcEEEEE
Q 006834 287 FDMAHCSGCLIPWYM-YDGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 287 FDlV~~s~~L~h~~~-d~~~~L~el~RvLKPGG~liis 323 (629)
||+|+|+.+++++.. +...+++++.|+|||||++++.
T Consensus 95 fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 95 YDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred CCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 999999999977653 3467999999999999996664
No 22
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.41 E-value=2.3e-12 Score=127.74 Aligned_cols=106 Identities=16% Similarity=0.265 Sum_probs=81.9
Q ss_pred HHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCCCCCCCCC
Q 006834 212 INELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKRLPYPARA 286 (629)
Q Consensus 212 I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~Lp~pd~s 286 (629)
+.+.+...++ .+|||+|||+|.++..|++++. .++++|+|+.+++.|+++ +. ++.+.+.|...++++ ++
T Consensus 22 l~~~l~~~~~--~~vLDiGcG~G~~a~~La~~g~---~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~ 95 (197)
T PRK11207 22 VLEAVKVVKP--GKTLDLGCGNGRNSLYLAANGF---DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-GE 95 (197)
T ss_pred HHHhcccCCC--CcEEEECCCCCHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-CC
Confidence 3344443333 4899999999999999999876 456669999999998753 32 367777787777664 67
Q ss_pred eeEEEecCccccccc-CHHHHHHHHHhcccCCcEEEEE
Q 006834 287 FDMAHCSGCLIPWYM-YDGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 287 FDlV~~s~~L~h~~~-d~~~~L~el~RvLKPGG~liis 323 (629)
||+|+|+.+++++.. +...++.++.++|||||++++.
T Consensus 96 fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 96 YDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred cCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 999999999866553 3568999999999999997654
No 23
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.41 E-value=1.2e-12 Score=133.13 Aligned_cols=101 Identities=15% Similarity=0.060 Sum_probs=82.4
Q ss_pred CCeEEEeCCCCchHHHHHHHcCC-cEeEEEeecCcHHHHHHHHHc------CCCeEEEEecCCCCCCCCCCeeEEEecCc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDI-LTMSFARRDTHEAQVQFALER------GVPAMIGVISSKRLPYPARAFDMAHCSGC 295 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~-~~v~i~gvDiS~~~i~~A~er------g~~~~~~v~d~~~Lp~pd~sFDlV~~s~~ 295 (629)
..+|||+|||+|.++..++++.. ....++++|+|+.|++.|+++ ..++.+.++|...++++ .+|+|+++.+
T Consensus 54 ~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~~ 131 (239)
T TIGR00740 54 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNFT 131 (239)
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeecc
Confidence 44899999999999999988631 234678889999999999875 23578888888888765 4899999999
Q ss_pred cccccc-CHHHHHHHHHhcccCCcEEEEEeC
Q 006834 296 LIPWYM-YDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 296 L~h~~~-d~~~~L~el~RvLKPGG~liis~P 325 (629)
++|+.. +...++.++.|+|+|||.|+++.+
T Consensus 132 l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 132 LQFLPPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 977753 246799999999999999999854
No 24
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.41 E-value=1.2e-12 Score=116.53 Aligned_cols=98 Identities=21% Similarity=0.295 Sum_probs=78.0
Q ss_pred CeEEEeCCCCchHHHHHHH--cCCcEeEEEeecCcHHHHHHHHHcC------CCeEEEEecC-CCCCCCCCCeeEEEecC
Q 006834 224 RTAVDTGCGVASWGAYLLK--RDILTMSFARRDTHEAQVQFALERG------VPAMIGVISS-KRLPYPARAFDMAHCSG 294 (629)
Q Consensus 224 ~~VLDIGCGtG~~a~~La~--~g~~~v~i~gvDiS~~~i~~A~erg------~~~~~~v~d~-~~Lp~pd~sFDlV~~s~ 294 (629)
.+|||+|||+|.++..+++ .+. .++++|+|+++++.|+++. .++.+.+.|. ..... .+.||+|++..
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~ 78 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGA---RVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSG 78 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTS---EEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECS
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCC---EEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECC
Confidence 4899999999999999999 455 4567799999999999763 5789999888 33333 45699999988
Q ss_pred -cccccc--cCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 295 -CLIPWY--MYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 295 -~L~h~~--~d~~~~L~el~RvLKPGG~liis~P 325 (629)
+++++. ++...+++++.+.|+|||+|++..+
T Consensus 79 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~~ 112 (112)
T PF12847_consen 79 FTLHFLLPLDERRRVLERIRRLLKPGGRLVINTC 112 (112)
T ss_dssp GSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred CccccccchhHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 554343 2456799999999999999999853
No 25
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.41 E-value=1.2e-12 Score=135.90 Aligned_cols=97 Identities=26% Similarity=0.322 Sum_probs=81.5
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCc--EeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCCCeeEEEecCcccccc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDIL--TMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCSGCLIPWY 300 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~--~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~ 300 (629)
..+|||+|||+|.++..|++.... ...++|+|+|+.+++.|+++..++.+.++|...+|+++++||+|++....
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~~---- 161 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYAP---- 161 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecCC----
Confidence 347999999999999999876432 12467889999999999998888899999999999999999999986531
Q ss_pred cCHHHHHHHHHhcccCCcEEEEEeCCC
Q 006834 301 MYDGLYLLEVDRVLRPGGYWILSGPPI 327 (629)
Q Consensus 301 ~d~~~~L~el~RvLKPGG~liis~P~~ 327 (629)
..+.++.|+|||||+|++..|..
T Consensus 162 ----~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 162 ----CKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred ----CCHHHHHhhccCCCEEEEEeCCC
Confidence 23689999999999999997654
No 26
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.40 E-value=2.4e-12 Score=129.01 Aligned_cols=117 Identities=23% Similarity=0.206 Sum_probs=93.6
Q ss_pred HHHHHhhcCccC-CCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCC-CeEEEEecCCCCCCCCCC
Q 006834 209 IDNINELIPLTG-GNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGV-PAMIGVISSKRLPYPARA 286 (629)
Q Consensus 209 i~~I~~lL~~~~-g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~-~~~~~v~d~~~Lp~pd~s 286 (629)
...+.+.+.... ..+.+|||+|||+|.++..+++.+... .++++|+++.+++.++++.. ++.+...|...+++++++
T Consensus 20 ~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 98 (240)
T TIGR02072 20 AKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQA-EFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSS 98 (240)
T ss_pred HHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCC-cEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCc
Confidence 334444444321 234589999999999999999987533 57888999999999988743 567888898888888899
Q ss_pred eeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeCCC
Q 006834 287 FDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPPI 327 (629)
Q Consensus 287 FDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P~~ 327 (629)
||+|++..+++|.. ++..++.++.++|+|||.+++..+..
T Consensus 99 fD~vi~~~~l~~~~-~~~~~l~~~~~~L~~~G~l~~~~~~~ 138 (240)
T TIGR02072 99 FDLIVSNLALQWCD-DLSQALSELARVLKPGGLLAFSTFGP 138 (240)
T ss_pred eeEEEEhhhhhhcc-CHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 99999999996554 78899999999999999999987533
No 27
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.39 E-value=1.7e-12 Score=122.83 Aligned_cols=100 Identities=26% Similarity=0.378 Sum_probs=83.7
Q ss_pred CCeEEEeCCCCchHHHHHHH-cCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCCCC--CCCCCeeEEEecC
Q 006834 223 IRTAVDTGCGVASWGAYLLK-RDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKRLP--YPARAFDMAHCSG 294 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~-~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~Lp--~pd~sFDlV~~s~ 294 (629)
..+|||+|||+|.++..|++ .+. ...++++|+|++|++.|+++ +. ++.|.+.|...++ ++ +.||+|++..
T Consensus 4 ~~~iLDlGcG~G~~~~~l~~~~~~-~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~ 81 (152)
T PF13847_consen 4 NKKILDLGCGTGRLLIQLAKELNP-GAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNG 81 (152)
T ss_dssp TSEEEEET-TTSHHHHHHHHHSTT-TSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEES
T ss_pred CCEEEEecCcCcHHHHHHHHhcCC-CCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEcC
Confidence 44899999999999999995 333 23578889999999999974 33 5899999998877 66 8999999999
Q ss_pred cccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 295 CLIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 295 ~L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
+++|.. ++..+++++.++|++||.+++..+
T Consensus 82 ~l~~~~-~~~~~l~~~~~~lk~~G~~i~~~~ 111 (152)
T PF13847_consen 82 VLHHFP-DPEKVLKNIIRLLKPGGILIISDP 111 (152)
T ss_dssp TGGGTS-HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred chhhcc-CHHHHHHHHHHHcCCCcEEEEEEC
Confidence 996655 788999999999999999999864
No 28
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.39 E-value=4.7e-12 Score=141.37 Aligned_cols=110 Identities=20% Similarity=0.335 Sum_probs=90.4
Q ss_pred HHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC----CCeEEEEecCCCCCCCCCC
Q 006834 211 NINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG----VPAMIGVISSKRLPYPARA 286 (629)
Q Consensus 211 ~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg----~~~~~~v~d~~~Lp~pd~s 286 (629)
.+.+.+... .+.+|||||||+|.++..|++.. ...++++|+|+.+++.|+++. .++.+.+.|...+++++++
T Consensus 257 ~l~~~~~~~--~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~ 332 (475)
T PLN02336 257 EFVDKLDLK--PGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNS 332 (475)
T ss_pred HHHHhcCCC--CCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCC
Confidence 344444433 34489999999999999998763 225677799999999998752 3578888998888888899
Q ss_pred eeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 287 FDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 287 FDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
||+|+|..+++|+. ++..++.++.|+|||||.+++..+
T Consensus 333 fD~I~s~~~l~h~~-d~~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 333 FDVIYSRDTILHIQ-DKPALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred EEEEEECCcccccC-CHHHHHHHHHHHcCCCeEEEEEEe
Confidence 99999999998887 889999999999999999999864
No 29
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.39 E-value=3.4e-12 Score=135.97 Aligned_cols=110 Identities=22% Similarity=0.213 Sum_probs=89.3
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHH--c----CCCeEEEEecCCCCCC
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALE--R----GVPAMIGVISSKRLPY 282 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~e--r----g~~~~~~v~d~~~Lp~ 282 (629)
.+.+...++...+ ++|||||||+|.++..+++.+.. .++|+|+|+.++..++. + ..++.+..++...+|+
T Consensus 111 ~~~l~~~l~~l~g--~~VLDIGCG~G~~~~~la~~g~~--~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~ 186 (322)
T PRK15068 111 WDRVLPHLSPLKG--RTVLDVGCGNGYHMWRMLGAGAK--LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA 186 (322)
T ss_pred HHHHHHhhCCCCC--CEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC
Confidence 3455555554333 49999999999999999998764 35777999998875432 2 2368888888888988
Q ss_pred CCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 283 PARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 283 pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
+++||+|+|..+++|.. ++..+|++++++|+|||.+++..
T Consensus 187 -~~~FD~V~s~~vl~H~~-dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 187 -LKAFDTVFSMGVLYHRR-SPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred -cCCcCEEEECChhhccC-CHHHHHHHHHHhcCCCcEEEEEE
Confidence 78999999999998876 88999999999999999999974
No 30
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.38 E-value=5.3e-13 Score=117.61 Aligned_cols=93 Identities=26% Similarity=0.356 Sum_probs=75.1
Q ss_pred EEEeCCCCchHHHHHHHcCCc--EeEEEeecCcHHHHHHHHHcC----CCeEEEEecCCCCCCCCCCeeEEEecCc-ccc
Q 006834 226 AVDTGCGVASWGAYLLKRDIL--TMSFARRDTHEAQVQFALERG----VPAMIGVISSKRLPYPARAFDMAHCSGC-LIP 298 (629)
Q Consensus 226 VLDIGCGtG~~a~~La~~g~~--~v~i~gvDiS~~~i~~A~erg----~~~~~~v~d~~~Lp~pd~sFDlV~~s~~-L~h 298 (629)
|||+|||+|..+..+++.... ...++++|+|++|++.++++. .++.+.+.|...+++.+++||+|+|+.. ++|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 799999999999999987511 146788899999999999764 6899999999999988899999999655 877
Q ss_pred cccC-HHHHHHHHHhcccCCc
Q 006834 299 WYMY-DGLYLLEVDRVLRPGG 318 (629)
Q Consensus 299 ~~~d-~~~~L~el~RvLKPGG 318 (629)
+.++ ...+++++.++|||||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 6533 4679999999999998
No 31
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.38 E-value=4.8e-12 Score=127.47 Aligned_cols=114 Identities=17% Similarity=0.122 Sum_probs=94.3
Q ss_pred HHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCc-----EeEEEeecCcHHHHHHHHHcC--------CCeEEEE
Q 006834 208 YIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDIL-----TMSFARRDTHEAQVQFALERG--------VPAMIGV 274 (629)
Q Consensus 208 ~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~-----~v~i~gvDiS~~~i~~A~erg--------~~~~~~v 274 (629)
+.+.+...+....+ .++||++||||.++..+++.-.. ...++..|+++.|+..+++|. ..+.|..
T Consensus 88 WKd~~v~~L~p~~~--m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~ 165 (296)
T KOG1540|consen 88 WKDMFVSKLGPGKG--MKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVE 165 (296)
T ss_pred HHHHhhhccCCCCC--CeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEe
Confidence 44555555555444 49999999999999999886322 245677899999999998763 2378899
Q ss_pred ecCCCCCCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 275 ISSKRLPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 275 ~d~~~Lp~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
+|++.|||++++||+...++.+..+. ++++.|+|++|||||||+|.+..
T Consensus 166 ~dAE~LpFdd~s~D~yTiafGIRN~t-h~~k~l~EAYRVLKpGGrf~cLe 214 (296)
T KOG1540|consen 166 GDAEDLPFDDDSFDAYTIAFGIRNVT-HIQKALREAYRVLKPGGRFSCLE 214 (296)
T ss_pred CCcccCCCCCCcceeEEEecceecCC-CHHHHHHHHHHhcCCCcEEEEEE
Confidence 99999999999999999999998888 89999999999999999998763
No 32
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.37 E-value=1.1e-11 Score=132.58 Aligned_cols=134 Identities=21% Similarity=0.217 Sum_probs=99.7
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC--CCeEEEEecCCCCCCCCCCeeEEEecCcccccc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG--VPAMIGVISSKRLPYPARAFDMAHCSGCLIPWY 300 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg--~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~ 300 (629)
..+|||+|||+|.++..+++... ...++++|.|++|++.|+++. .++.+..+|...+++++++||+|+++.+++++.
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~ 192 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWP 192 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCC
Confidence 34899999999999988887532 135678899999999998863 357788889988999999999999999997777
Q ss_pred cCHHHHHHHHHhcccCCcEEEEEeCC--CCcccccc--CccCcchhhhhHHHHHHHHHHHhcceeec
Q 006834 301 MYDGLYLLEVDRVLRPGGYWILSGPP--IHWKKYWR--GWERTKEDLKQEQDTIEDIAKRLCWKKLI 363 (629)
Q Consensus 301 ~d~~~~L~el~RvLKPGG~liis~P~--~~w~~~~~--~w~~~~e~l~~~~~~ie~l~~~l~w~~v~ 363 (629)
++..+|+++.|+|||||.+++..+. ..|..+.. .|. .....+++.++++..+|+.+.
T Consensus 193 -d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~-----~~~t~eEl~~lL~~aGF~~V~ 253 (340)
T PLN02490 193 -DPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWM-----LFPKEEEYIEWFTKAGFKDVK 253 (340)
T ss_pred -CHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhc-----cCCCHHHHHHHHHHCCCeEEE
Confidence 7888999999999999999887642 22322110 010 011234566777777876653
No 33
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.37 E-value=3e-12 Score=126.15 Aligned_cols=150 Identities=19% Similarity=0.236 Sum_probs=115.7
Q ss_pred HHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCCCeeEE
Q 006834 211 NINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMA 290 (629)
Q Consensus 211 ~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~sFDlV 290 (629)
.+...++... .++|.|+|||+|..+..|+++-+.. .|+|+|.|++|++.|+++.+++.|..+|...+. ++..+|++
T Consensus 21 dLla~Vp~~~--~~~v~DLGCGpGnsTelL~~RwP~A-~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~-p~~~~dll 96 (257)
T COG4106 21 DLLARVPLER--PRRVVDLGCGPGNSTELLARRWPDA-VITGIDSSPAMLAKAAQRLPDATFEEADLRTWK-PEQPTDLL 96 (257)
T ss_pred HHHhhCCccc--cceeeecCCCCCHHHHHHHHhCCCC-eEeeccCCHHHHHHHHHhCCCCceecccHhhcC-CCCccchh
Confidence 3344444433 4589999999999999999997654 688999999999999999999999999988775 56789999
Q ss_pred EecCcccccccCHHHHHHHHHhcccCCcEEEEEeCCCCccccccCccCcchhhhhHHHHHHHHHHHhcceeecccCceEE
Q 006834 291 HCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIEDIAKRLCWKKLIEKNDLAI 370 (629)
Q Consensus 291 ~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P~~~w~~~~~~w~~~~e~l~~~~~~ie~l~~~l~w~~v~~~~~~ai 370 (629)
+++.+| ||.++-..+|..+...|.|||.|.+..|.. +. ......|++.++..-|.........
T Consensus 97 faNAvl-qWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN-~d-------------epsH~~mr~~A~~~p~~~~l~~~~~-- 159 (257)
T COG4106 97 FANAVL-QWLPDHPELLPRLVSQLAPGGVLAVQMPDN-LD-------------EPSHRLMRETADEAPFAQELGGRGL-- 159 (257)
T ss_pred hhhhhh-hhccccHHHHHHHHHhhCCCceEEEECCCc-cC-------------chhHHHHHHHHhcCchhhhhCcccc--
Confidence 999999 888788899999999999999999987732 11 1124567888887777654443222
Q ss_pred EeccCCccccc
Q 006834 371 WQKPINHIDCN 381 (629)
Q Consensus 371 wqKp~~~~~c~ 381 (629)
.++++-...-|
T Consensus 160 ~r~~v~s~a~Y 170 (257)
T COG4106 160 TRAPLPSPAAY 170 (257)
T ss_pred ccCCCCCHHHH
Confidence 46776554444
No 34
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.35 E-value=7.8e-12 Score=132.50 Aligned_cols=111 Identities=20% Similarity=0.145 Sum_probs=86.6
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHH--c----CCCeEEEEecCCCCCC
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALE--R----GVPAMIGVISSKRLPY 282 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~e--r----g~~~~~~v~d~~~Lp~ 282 (629)
.+.+...+....+ ++|||||||+|.++..++..+.. .++|+|+|+.|+..++. + ...+.+..++...++.
T Consensus 110 ~~~~l~~l~~~~g--~~VLDvGCG~G~~~~~~~~~g~~--~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~ 185 (314)
T TIGR00452 110 WDRVLPHLSPLKG--RTILDVGCGSGYHMWRMLGHGAK--SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE 185 (314)
T ss_pred HHHHHHhcCCCCC--CEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC
Confidence 3445555544444 49999999999999999988764 45777999999876432 1 2346677777777775
Q ss_pred CCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 283 PARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 283 pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
. .+||+|+|+.+++|+. ++..+|.+++|+|||||.|++...
T Consensus 186 ~-~~FD~V~s~gvL~H~~-dp~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 186 L-YAFDTVFSMGVLYHRK-SPLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred C-CCcCEEEEcchhhccC-CHHHHHHHHHHhcCCCCEEEEEEE
Confidence 4 4899999999998986 889999999999999999999753
No 35
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.33 E-value=1.1e-11 Score=126.09 Aligned_cols=159 Identities=18% Similarity=0.198 Sum_probs=115.2
Q ss_pred CCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCCCeeEEEecCccccccc
Q 006834 222 NIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCSGCLIPWYM 301 (629)
Q Consensus 222 ~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~ 301 (629)
...++||||+|.|..+..|+...-. +++.|.|..|....+++|.. +.+...+.-.+.+||+|.|.++|.. ..
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~---v~aTE~S~~Mr~rL~~kg~~----vl~~~~w~~~~~~fDvIscLNvLDR-c~ 165 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKE---VYATEASPPMRWRLSKKGFT----VLDIDDWQQTDFKFDVISCLNVLDR-CD 165 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcce---EEeecCCHHHHHHHHhCCCe----EEehhhhhccCCceEEEeehhhhhc-cC
Confidence 3458999999999999999887553 46669999999999999854 3334444434578999999999944 44
Q ss_pred CHHHHHHHHHhcccCCcEEEEEe--CCCCcccccc-CccCcchhhhhHHHHHHHHHHHhcceeecccCceEEEeccCCcc
Q 006834 302 YDGLYLLEVDRVLRPGGYWILSG--PPIHWKKYWR-GWERTKEDLKQEQDTIEDIAKRLCWKKLIEKNDLAIWQKPINHI 378 (629)
Q Consensus 302 d~~~~L~el~RvLKPGG~liis~--P~~~w~~~~~-~w~~~~e~l~~~~~~ie~l~~~l~w~~v~~~~~~aiwqKp~~~~ 378 (629)
+|..+|+++++.|+|+|.++++. |-..+.+... .+.++.+.+......+|+.+.++- .+.++..+. .
T Consensus 166 ~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~--~v~~p~GF~--------v 235 (265)
T PF05219_consen 166 RPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLV--NVFEPAGFE--------V 235 (265)
T ss_pred CHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHH--HHHHhcCCE--------E
Confidence 79999999999999999999965 6555666554 577777777666677777777775 344443332 1
Q ss_pred ccccccccCCCCCCCCCCCCCCccc
Q 006834 379 DCNKSKVVYKTPQICGPDNPDTAWY 403 (629)
Q Consensus 379 ~c~~~r~~~~~p~lC~~~~~d~~wy 403 (629)
.-++ +.|++|++|-..++++
T Consensus 236 ~~~t-----r~PYLcEGD~~~~~Y~ 255 (265)
T PF05219_consen 236 ERWT-----RLPYLCEGDLYQSYYV 255 (265)
T ss_pred EEEe-----ccCccccCcccCceEE
Confidence 2222 2399999876555444
No 36
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.33 E-value=7.6e-12 Score=122.46 Aligned_cols=139 Identities=26% Similarity=0.314 Sum_probs=105.4
Q ss_pred HHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCC-CC-CCCCCC
Q 006834 210 DNINELIPLTGGNIRTAVDTGCGVASWGAYLLKR-DILTMSFARRDTHEAQVQFALERGVPAMIGVISSK-RL-PYPARA 286 (629)
Q Consensus 210 ~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~-~L-p~pd~s 286 (629)
+.|.++++. + .+|||+|||.|.+..+|.+. ++.+ .|+|++++.+..+.++|.++ .++|.. .| .|++++
T Consensus 5 ~~I~~~I~p--g--srVLDLGCGdG~LL~~L~~~k~v~g---~GvEid~~~v~~cv~rGv~V--iq~Dld~gL~~f~d~s 75 (193)
T PF07021_consen 5 QIIAEWIEP--G--SRVLDLGCGDGELLAYLKDEKQVDG---YGVEIDPDNVAACVARGVSV--IQGDLDEGLADFPDQS 75 (193)
T ss_pred HHHHHHcCC--C--CEEEecCCCchHHHHHHHHhcCCeE---EEEecCHHHHHHHHHcCCCE--EECCHHHhHhhCCCCC
Confidence 456666654 3 49999999999999999984 4544 56699999999999999764 445543 34 489999
Q ss_pred eeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeCCC-Ccccccc---------------CccCcchhhhhHHHHH
Q 006834 287 FDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPPI-HWKKYWR---------------GWERTKEDLKQEQDTI 350 (629)
Q Consensus 287 FDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P~~-~w~~~~~---------------~w~~~~e~l~~~~~~i 350 (629)
||.|+++.+|.+.. +|..+|.|+.|+ |...+++.|+. .|..+.. .|..++.-..-..+.+
T Consensus 76 FD~VIlsqtLQ~~~-~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DF 151 (193)
T PF07021_consen 76 FDYVILSQTLQAVR-RPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDF 151 (193)
T ss_pred ccEEehHhHHHhHh-HHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHH
Confidence 99999999998887 899999999777 67888898876 4433322 4766666666666778
Q ss_pred HHHHHHhccee
Q 006834 351 EDIAKRLCWKK 361 (629)
Q Consensus 351 e~l~~~l~w~~ 361 (629)
+++.+.++++-
T Consensus 152 e~lc~~~~i~I 162 (193)
T PF07021_consen 152 EDLCRELGIRI 162 (193)
T ss_pred HHHHHHCCCEE
Confidence 88888776543
No 37
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.32 E-value=7.6e-12 Score=128.28 Aligned_cols=117 Identities=15% Similarity=0.040 Sum_probs=87.0
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcC-CcEeEEEeecCcHHHHHHHHHcC------CCeEEEEecCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRD-ILTMSFARRDTHEAQVQFALERG------VPAMIGVISSK 278 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g-~~~v~i~gvDiS~~~i~~A~erg------~~~~~~v~d~~ 278 (629)
+...+.+..++........+|||+|||+|..+..|++.. .....++++|+|+.|++.|+++. .++.+.+++..
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~ 119 (247)
T PRK15451 40 SNIISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIR 119 (247)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChh
Confidence 344444443332222234589999999999998888731 12336778899999999998762 25788888888
Q ss_pred CCCCCCCCeeEEEecCcccccccC-HHHHHHHHHhcccCCcEEEEEe
Q 006834 279 RLPYPARAFDMAHCSGCLIPWYMY-DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 279 ~Lp~pd~sFDlV~~s~~L~h~~~d-~~~~L~el~RvLKPGG~liis~ 324 (629)
.++++ .+|+|+++.+++|+..+ ...++.++.++|||||.|+++.
T Consensus 120 ~~~~~--~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 120 DIAIE--NASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred hCCCC--CCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 77764 49999999999777633 3579999999999999999985
No 38
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.32 E-value=8e-12 Score=130.12 Aligned_cols=123 Identities=24% Similarity=0.387 Sum_probs=87.3
Q ss_pred ecCCCCCCCCchHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHc----CC
Q 006834 194 FPGGGTTFPNGADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKR-DILTMSFARRDTHEAQVQFALER----GV 268 (629)
Q Consensus 194 Fpgggt~f~~ga~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~er----g~ 268 (629)
|+.+...........++.+.+.+...+|. +|||||||.|.++.+++++ |+ .++++.+|+++.+.|+++ |.
T Consensus 36 ~~~~~~~Le~AQ~~k~~~~~~~~~l~~G~--~vLDiGcGwG~~~~~~a~~~g~---~v~gitlS~~Q~~~a~~~~~~~gl 110 (273)
T PF02353_consen 36 FDEGDDTLEEAQERKLDLLCEKLGLKPGD--RVLDIGCGWGGLAIYAAERYGC---HVTGITLSEEQAEYARERIREAGL 110 (273)
T ss_dssp -SSTT--HHHHHHHHHHHHHTTTT--TT---EEEEES-TTSHHHHHHHHHH-----EEEEEES-HHHHHHHHHHHHCSTS
T ss_pred cCCchhhHHHHHHHHHHHHHHHhCCCCCC--EEEEeCCCccHHHHHHHHHcCc---EEEEEECCHHHHHHHHHHHHhcCC
Confidence 33333334444555677888888887777 9999999999999999998 65 456669999999999865 43
Q ss_pred --CeEEEEecCCCCCCCCCCeeEEEecCccccccc-CHHHHHHHHHhcccCCcEEEEEe
Q 006834 269 --PAMIGVISSKRLPYPARAFDMAHCSGCLIPWYM-YDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 269 --~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~-d~~~~L~el~RvLKPGG~liis~ 324 (629)
.+.+...|...++. +||.|++..+++|+.. +...+++++.++|||||.+++..
T Consensus 111 ~~~v~v~~~D~~~~~~---~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 111 EDRVEVRLQDYRDLPG---KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp SSTEEEEES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred CCceEEEEeeccccCC---CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence 47777777766553 8999999999999963 45789999999999999999853
No 39
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.31 E-value=1.9e-11 Score=128.00 Aligned_cols=97 Identities=16% Similarity=0.233 Sum_probs=79.2
Q ss_pred CeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCCeEEEEecCCCCCCCCCCeeEEEecCccccc
Q 006834 224 RTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GVPAMIGVISSKRLPYPARAFDMAHCSGCLIPW 299 (629)
Q Consensus 224 ~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~ 299 (629)
.+|||+|||+|.++.+|++++. .++++|+|+.+++.++++ +.++.+...|....++ +++||+|+++.++++.
T Consensus 122 ~~vLDlGcG~G~~~~~la~~g~---~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALLGF---DVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFL 197 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhC
Confidence 3899999999999999999876 456669999999988754 5567777777766555 6789999999999776
Q ss_pred cc-CHHHHHHHHHhcccCCcEEEEEe
Q 006834 300 YM-YDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 300 ~~-d~~~~L~el~RvLKPGG~liis~ 324 (629)
.. +...++.++.++|+|||++++..
T Consensus 198 ~~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 198 NRERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 53 24679999999999999977754
No 40
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.30 E-value=1.4e-11 Score=127.73 Aligned_cols=103 Identities=17% Similarity=0.184 Sum_probs=82.4
Q ss_pred CCCeEEEeCCCCch----HHHHHHHcCCc----EeEEEeecCcHHHHHHHHHcC--------------------------
Q 006834 222 NIRTAVDTGCGVAS----WGAYLLKRDIL----TMSFARRDTHEAQVQFALERG-------------------------- 267 (629)
Q Consensus 222 ~~~~VLDIGCGtG~----~a~~La~~g~~----~v~i~gvDiS~~~i~~A~erg-------------------------- 267 (629)
.+.+|+|+|||+|. ++..|++.+.. ...++++|+|+.|++.|++.-
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 34589999999995 55566665331 457889999999999998641
Q ss_pred ------CCeEEEEecCCCCCCCCCCeeEEEecCcccccccC-HHHHHHHHHhcccCCcEEEEEe
Q 006834 268 ------VPAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMY-DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 268 ------~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d-~~~~L~el~RvLKPGG~liis~ 324 (629)
..+.|.+.|....+++.++||+|+|.++++|+... ...++.++.++|+|||+|++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 14678888888888778999999999999888632 4579999999999999999963
No 41
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.29 E-value=1e-12 Score=114.99 Aligned_cols=92 Identities=25% Similarity=0.270 Sum_probs=59.1
Q ss_pred EEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC-----CCeEEEEecCCCCC-C-CCCCeeEEEecCccccc
Q 006834 227 VDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG-----VPAMIGVISSKRLP-Y-PARAFDMAHCSGCLIPW 299 (629)
Q Consensus 227 LDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg-----~~~~~~v~d~~~Lp-~-pd~sFDlV~~s~~L~h~ 299 (629)
||||||+|.++..+++.. ....++++|+|+.|++.|+++. .............. . ..++||+|+++.+++|+
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 799999999999999986 3557889999999997776541 22233333333222 1 23599999999999888
Q ss_pred ccCHHHHHHHHHhcccCCcEE
Q 006834 300 YMYDGLYLLEVDRVLRPGGYW 320 (629)
Q Consensus 300 ~~d~~~~L~el~RvLKPGG~l 320 (629)
++...+++.+.++|||||.|
T Consensus 80 -~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 -EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -S-HHHHHHHHTTT-TSS-EE
T ss_pred -hhHHHHHHHHHHHcCCCCCC
Confidence 58899999999999999986
No 42
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.29 E-value=2.3e-11 Score=126.04 Aligned_cols=102 Identities=20% Similarity=0.107 Sum_probs=83.5
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C-CCeEEEEecCCCCCCCCCCeeEEEecCccc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G-VPAMIGVISSKRLPYPARAFDMAHCSGCLI 297 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g-~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~ 297 (629)
+.+|||+|||+|..+..+++.......++++|+++.+++.|+++ + .++.+...+...+++++++||+|+++.+++
T Consensus 78 g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v~~ 157 (272)
T PRK11873 78 GETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCVIN 157 (272)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCccc
Confidence 34999999999998877766422222467789999999999875 2 357788889888999889999999998886
Q ss_pred ccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 298 PWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 298 h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
+.. +...++.++.|+|||||.|+++..
T Consensus 158 ~~~-d~~~~l~~~~r~LkpGG~l~i~~~ 184 (272)
T PRK11873 158 LSP-DKERVFKEAFRVLKPGGRFAISDV 184 (272)
T ss_pred CCC-CHHHHHHHHHHHcCCCcEEEEEEe
Confidence 654 778899999999999999999753
No 43
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.27 E-value=3.8e-11 Score=120.53 Aligned_cols=98 Identities=21% Similarity=0.242 Sum_probs=81.8
Q ss_pred eEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C--CCeEEEEecCCCCCCCCCCeeEEEecCcccc
Q 006834 225 TAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G--VPAMIGVISSKRLPYPARAFDMAHCSGCLIP 298 (629)
Q Consensus 225 ~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g--~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h 298 (629)
+|||||||+|.++..+++.... ..++++|+|+++++.|+++ + ..+.+...|....+++ ++||+|++..+++|
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~-~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~ 79 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPH-LQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHH 79 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHh
Confidence 7999999999999999887532 3567889999999999875 2 2467777787666664 58999999999988
Q ss_pred cccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 299 WYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 299 ~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
+. +...++.++.++|||||++++..+
T Consensus 80 ~~-~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 80 IK-DKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred CC-CHHHHHHHHHHHcCCCCEEEEEEc
Confidence 76 788999999999999999999875
No 44
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.27 E-value=4e-11 Score=119.75 Aligned_cols=112 Identities=16% Similarity=0.032 Sum_probs=86.4
Q ss_pred HHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCCCe
Q 006834 208 YIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAF 287 (629)
Q Consensus 208 ~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~sF 287 (629)
..+.+.+.+...+ .+.+|||+|||+|.++..|++... ...++|+|+|++|++.|+++..++.+.+++... |+++++|
T Consensus 30 ~~~~~~~~l~~~~-~~~~VLDiGCG~G~~~~~L~~~~~-~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sf 106 (204)
T TIGR03587 30 KLAMFARALNRLP-KIASILELGANIGMNLAALKRLLP-FKHIYGVEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFF 106 (204)
T ss_pred HHHHHHHHHHhcC-CCCcEEEEecCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCE
Confidence 3444444443222 244899999999999999988632 235788899999999999876667788888777 8889999
Q ss_pred eEEEecCcccccccC-HHHHHHHHHhcccCCcEEEEEe
Q 006834 288 DMAHCSGCLIPWYMY-DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 288 DlV~~s~~L~h~~~d-~~~~L~el~RvLKPGG~liis~ 324 (629)
|+|+++.+++|+.++ ...+++++.|++ ++++++..
T Consensus 107 D~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 107 DLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred EEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEE
Confidence 999999999998643 467999999998 56777764
No 45
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.24 E-value=2e-11 Score=123.82 Aligned_cols=101 Identities=19% Similarity=0.166 Sum_probs=80.8
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC-------CC----eEEEEecCCCCCCCCCCeeEEE
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG-------VP----AMIGVISSKRLPYPARAFDMAH 291 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg-------~~----~~~~v~d~~~Lp~pd~sFDlV~ 291 (629)
+++|||+|||.|.++..|++.|..+ +|+|+++.|++.|++.. .+ +.+...+.+.+ .+.||+|+
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V---~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVv 163 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQV---TGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVV 163 (282)
T ss_pred CceEEEeccCccccchhhHhhCCee---EeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc---ccccceee
Confidence 4689999999999999999999754 56699999999999762 11 22333333333 24599999
Q ss_pred ecCcccccccCHHHHHHHHHhcccCCcEEEEEeCCCCcc
Q 006834 292 CSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPPIHWK 330 (629)
Q Consensus 292 ~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P~~~w~ 330 (629)
|+.+++|.. +++.++..+.+.|||||.+++++-+..+.
T Consensus 164 csevleHV~-dp~~~l~~l~~~lkP~G~lfittinrt~l 201 (282)
T KOG1270|consen 164 CSEVLEHVK-DPQEFLNCLSALLKPNGRLFITTINRTIL 201 (282)
T ss_pred eHHHHHHHh-CHHHHHHHHHHHhCCCCceEeeehhhhHH
Confidence 999999998 89999999999999999999997544443
No 46
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.24 E-value=8e-11 Score=116.24 Aligned_cols=107 Identities=19% Similarity=0.309 Sum_probs=80.8
Q ss_pred HHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHH----HcCCCeEEEEecCCCCCCCCCCe
Q 006834 212 INELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFAL----ERGVPAMIGVISSKRLPYPARAF 287 (629)
Q Consensus 212 I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~----erg~~~~~~v~d~~~Lp~pd~sF 287 (629)
+.+.++..+ +.++||+|||.|+.+.+|+++|..+.+ +|.|+..++.+. +++.++...+.|.....++ +.|
T Consensus 22 v~~a~~~~~--~g~~LDlgcG~GRNalyLA~~G~~VtA---vD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~y 95 (192)
T PF03848_consen 22 VLEAVPLLK--PGKALDLGCGEGRNALYLASQGFDVTA---VDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEY 95 (192)
T ss_dssp HHHHCTTS---SSEEEEES-TTSHHHHHHHHTT-EEEE---EESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTE
T ss_pred HHHHHhhcC--CCcEEEcCCCCcHHHHHHHHCCCeEEE---EECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCc
Confidence 444444433 348999999999999999999996554 499999887765 4577888889998877765 689
Q ss_pred eEEEecCcccccccC-HHHHHHHHHhcccCCcEEEEEe
Q 006834 288 DMAHCSGCLIPWYMY-DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 288 DlV~~s~~L~h~~~d-~~~~L~el~RvLKPGG~liis~ 324 (629)
|+|++..+++++..+ ...++..+...++|||++++.+
T Consensus 96 D~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 96 DFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp EEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 999998888777755 4568999999999999999864
No 47
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.23 E-value=6.2e-11 Score=122.87 Aligned_cols=123 Identities=23% Similarity=0.328 Sum_probs=97.1
Q ss_pred ecCCCCCCCCchHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHc----CC
Q 006834 194 FPGGGTTFPNGADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKR-DILTMSFARRDTHEAQVQFALER----GV 268 (629)
Q Consensus 194 Fpgggt~f~~ga~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~er----g~ 268 (629)
|+.............++.+.+.+.+.+|. +|||||||.|.++.+++++ ++. ++|+++|++|.+.++++ |.
T Consensus 46 f~~~~~tL~eAQ~~k~~~~~~kl~L~~G~--~lLDiGCGWG~l~~~aA~~y~v~---V~GvTlS~~Q~~~~~~r~~~~gl 120 (283)
T COG2230 46 FEDPDMTLEEAQRAKLDLILEKLGLKPGM--TLLDIGCGWGGLAIYAAEEYGVT---VVGVTLSEEQLAYAEKRIAARGL 120 (283)
T ss_pred eCCCCCChHHHHHHHHHHHHHhcCCCCCC--EEEEeCCChhHHHHHHHHHcCCE---EEEeeCCHHHHHHHHHHHHHcCC
Confidence 44444445455566688889999988888 9999999999999999998 454 45669999999999874 43
Q ss_pred --CeEEEEecCCCCCCCCCCeeEEEecCcccccccC-HHHHHHHHHhcccCCcEEEEEe
Q 006834 269 --PAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMY-DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 269 --~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d-~~~~L~el~RvLKPGG~liis~ 324 (629)
++.+...|...+. +.||-|++..+++|+... -..++..++++|+|||.+++-+
T Consensus 121 ~~~v~v~l~d~rd~~---e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~ 176 (283)
T COG2230 121 EDNVEVRLQDYRDFE---EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHS 176 (283)
T ss_pred CcccEEEeccccccc---cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEE
Confidence 3566555554443 459999999999999854 5789999999999999999964
No 48
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.22 E-value=1.5e-10 Score=115.15 Aligned_cols=115 Identities=19% Similarity=0.185 Sum_probs=92.4
Q ss_pred HHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC---CCeEEEEecCCCCCCCC
Q 006834 208 YIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG---VPAMIGVISSKRLPYPA 284 (629)
Q Consensus 208 ~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg---~~~~~~v~d~~~Lp~pd 284 (629)
+.+.+.+.+...+ +.+|||+|||+|.++..+++.......++++|+++.+++.++++. .++.+...+...+++++
T Consensus 27 ~~~~~~~~~~~~~--~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 104 (223)
T TIGR01934 27 WRRRAVKLIGVFK--GQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFED 104 (223)
T ss_pred HHHHHHHHhccCC--CCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCC
Confidence 3444555554433 348999999999999999988653235778899999999998864 35778888888888878
Q ss_pred CCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 285 RAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 285 ~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
++||+|+++.++++.. ++..+++++.++|+|||.+++...
T Consensus 105 ~~~D~i~~~~~~~~~~-~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 105 NSFDAVTIAFGLRNVT-DIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred CcEEEEEEeeeeCCcc-cHHHHHHHHHHHcCCCcEEEEEEe
Confidence 8999999999986665 788999999999999999998753
No 49
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.22 E-value=1.1e-10 Score=117.46 Aligned_cols=98 Identities=17% Similarity=0.049 Sum_probs=79.6
Q ss_pred CeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHH-cC----------------CCeEEEEecCCCCCCC-CC
Q 006834 224 RTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALE-RG----------------VPAMIGVISSKRLPYP-AR 285 (629)
Q Consensus 224 ~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~e-rg----------------~~~~~~v~d~~~Lp~p-d~ 285 (629)
.+|||+|||.|..+.+|+++|..+ +++|+|+.+++.+.+ .+ ..+.+.++|...++.. .+
T Consensus 36 ~rvLd~GCG~G~da~~LA~~G~~V---~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~ 112 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAEQGHRV---LGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG 112 (213)
T ss_pred CeEEEeCCCchhHHHHHHhCCCeE---EEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence 489999999999999999999865 455999999998643 22 3477788888877643 46
Q ss_pred CeeEEEecCcccccccC-HHHHHHHHHhcccCCcEEEEEe
Q 006834 286 AFDMAHCSGCLIPWYMY-DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 286 sFDlV~~s~~L~h~~~d-~~~~L~el~RvLKPGG~liis~ 324 (629)
.||.|+...+++|++.+ ...++..+.++|||||++++.+
T Consensus 113 ~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~ 152 (213)
T TIGR03840 113 PVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLIT 152 (213)
T ss_pred CcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 79999998888888755 3569999999999999877654
No 50
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.22 E-value=4.4e-11 Score=117.22 Aligned_cols=98 Identities=23% Similarity=0.286 Sum_probs=80.2
Q ss_pred eEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc-----CCCeE-EEEecCCCCC-CCCCCeeEEEecCccc
Q 006834 225 TAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER-----GVPAM-IGVISSKRLP-YPARAFDMAHCSGCLI 297 (629)
Q Consensus 225 ~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er-----g~~~~-~~v~d~~~Lp-~pd~sFDlV~~s~~L~ 297 (629)
.|||||||||..-.++--. ...+++++|.++.|-++|.++ ..++. |++++.+.+| ++++|+|.|+|..+|.
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~--p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLC 156 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWK--PINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLC 156 (252)
T ss_pred ceEEecccCCCCcccccCC--CCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEe
Confidence 5899999999765444322 234678889999999988753 34455 8899999998 8899999999999996
Q ss_pred ccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 298 PWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 298 h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
... ++.+.|.++.|+|||||.+++..+
T Consensus 157 Sve-~~~k~L~e~~rlLRpgG~iifiEH 183 (252)
T KOG4300|consen 157 SVE-DPVKQLNEVRRLLRPGGRIIFIEH 183 (252)
T ss_pred ccC-CHHHHHHHHHHhcCCCcEEEEEec
Confidence 554 899999999999999999999754
No 51
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.22 E-value=1.7e-10 Score=115.93 Aligned_cols=114 Identities=21% Similarity=0.181 Sum_probs=91.1
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC------CCeEEEEecCCCCCC
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG------VPAMIGVISSKRLPY 282 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg------~~~~~~v~d~~~Lp~ 282 (629)
...+...+...++ .+|||+|||+|.++..+++.+.....++++|+++.+++.++++. .++.+...|...+++
T Consensus 40 ~~~~~~~~~~~~~--~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 117 (239)
T PRK00216 40 RRKTIKWLGVRPG--DKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF 117 (239)
T ss_pred HHHHHHHhCCCCC--CeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC
Confidence 4444444444333 48999999999999999987642346788899999999998762 357788888888887
Q ss_pred CCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 283 PARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 283 pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
+.++||+|+++.+++++. +...++.++.++|+|||.+++...
T Consensus 118 ~~~~~D~I~~~~~l~~~~-~~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 118 PDNSFDAVTIAFGLRNVP-DIDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred CCCCccEEEEecccccCC-CHHHHHHHHHHhccCCcEEEEEEe
Confidence 778999999999997766 788999999999999999988653
No 52
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.22 E-value=2.2e-11 Score=119.59 Aligned_cols=99 Identities=20% Similarity=0.163 Sum_probs=76.1
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC---CCeEEEEecCCCCCCCCCCeeEEEecCccccc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG---VPAMIGVISSKRLPYPARAFDMAHCSGCLIPW 299 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg---~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~ 299 (629)
.+++||+|||.|.++..|+.+.- .++++|+|+.+++.|++|- .++.+.+.+.... .|.++||+|+++.+++.+
T Consensus 44 y~~alEvGCs~G~lT~~LA~rCd---~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~-~P~~~FDLIV~SEVlYYL 119 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPRCD---RLLAVDISPRALARARERLAGLPHVEWIQADVPEF-WPEGRFDLIVLSEVLYYL 119 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGGEE---EEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES-GGGS
T ss_pred cceeEecCCCccHHHHHHHHhhC---ceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCC-CCCCCeeEEEEehHhHcC
Confidence 45899999999999999999843 5677899999999999883 4688888887654 578999999999999777
Q ss_pred cc--CHHHHHHHHHhcccCCcEEEEEeC
Q 006834 300 YM--YDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 300 ~~--d~~~~L~el~RvLKPGG~liis~P 325 (629)
.+ +...++..+...|+|||.|++...
T Consensus 120 ~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 120 DDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp SSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 53 235689999999999999999753
No 53
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.21 E-value=3.4e-10 Score=111.65 Aligned_cols=115 Identities=17% Similarity=0.154 Sum_probs=88.9
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCCCCCCCCCeeEEEecCccc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKRLPYPARAFDMAHCSGCLI 297 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~ 297 (629)
+.+|||+|||+|.++..++.... ...++++|.++.|++.|+++ +. ++.+..++...++. .++||+|+|...
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~-~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~~-- 121 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARP-ELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRAV-- 121 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEccc--
Confidence 45899999999999999887543 23677889999999988864 33 48888888888776 779999998642
Q ss_pred ccccCHHHHHHHHHhcccCCcEEEEEeCCCCccccccCccCcchhhhhHHHHHHHHHHHhcceee
Q 006834 298 PWYMYDGLYLLEVDRVLRPGGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIEDIAKRLCWKKL 362 (629)
Q Consensus 298 h~~~d~~~~L~el~RvLKPGG~liis~P~~~w~~~~~~w~~~~e~l~~~~~~ie~l~~~l~w~~v 362 (629)
.+...++.++.++|||||++++..+.. ....++++++.++|...
T Consensus 122 ---~~~~~~l~~~~~~LkpGG~lv~~~~~~------------------~~~~l~~~~~~~~~~~~ 165 (187)
T PRK00107 122 ---ASLSDLVELCLPLLKPGGRFLALKGRD------------------PEEEIAELPKALGGKVE 165 (187)
T ss_pred ---cCHHHHHHHHHHhcCCCeEEEEEeCCC------------------hHHHHHHHHHhcCceEe
Confidence 256789999999999999999985321 12347778888888643
No 54
>PRK06922 hypothetical protein; Provisional
Probab=99.20 E-value=8.3e-11 Score=133.41 Aligned_cols=102 Identities=19% Similarity=0.126 Sum_probs=83.8
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCCeEEEEecCCCCC--CCCCCeeEEEecCcc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GVPAMIGVISSKRLP--YPARAFDMAHCSGCL 296 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~~~~~v~d~~~Lp--~pd~sFDlV~~s~~L 296 (629)
+.+|||+|||+|.++..+++... ...++++|+|+.|++.|+++ +.++.+.++|...++ +++++||+|+++.++
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P-~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETE-DKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence 34899999999999988887643 34678889999999999875 345677788888887 788999999999988
Q ss_pred cccc------------cCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 297 IPWY------------MYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 297 ~h~~------------~d~~~~L~el~RvLKPGG~liis~P 325 (629)
+++. .+...+|+++.|+|||||.+++...
T Consensus 498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 7663 1346799999999999999999753
No 55
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.18 E-value=1.6e-10 Score=125.86 Aligned_cols=112 Identities=25% Similarity=0.345 Sum_probs=87.3
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHcC--CCeEEEEecCCCCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKR-DILTMSFARRDTHEAQVQFALERG--VPAMIGVISSKRLPY 282 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~erg--~~~~~~v~d~~~Lp~ 282 (629)
....+.+.+.+...++. +|||||||+|.++..++++ +. .++++|+|++|++.|+++. ..+.+...|...+
T Consensus 153 ~~k~~~l~~~l~l~~g~--rVLDIGcG~G~~a~~la~~~g~---~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l-- 225 (383)
T PRK11705 153 EAKLDLICRKLQLKPGM--RVLDIGCGWGGLARYAAEHYGV---SVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL-- 225 (383)
T ss_pred HHHHHHHHHHhCCCCCC--EEEEeCCCccHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc--
Confidence 33455566666655554 9999999999999999876 44 5677799999999999874 3456666665544
Q ss_pred CCCCeeEEEecCccccccc-CHHHHHHHHHhcccCCcEEEEEeC
Q 006834 283 PARAFDMAHCSGCLIPWYM-YDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 283 pd~sFDlV~~s~~L~h~~~-d~~~~L~el~RvLKPGG~liis~P 325 (629)
+++||.|++..+++|... +...++.++.++|||||++++...
T Consensus 226 -~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 226 -NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred -CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 478999999999988753 356899999999999999999753
No 56
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.18 E-value=4e-10 Score=101.43 Aligned_cols=111 Identities=17% Similarity=0.063 Sum_probs=81.5
Q ss_pred HHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C-CCeEEEEecCCC-C
Q 006834 207 AYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G-VPAMIGVISSKR-L 280 (629)
Q Consensus 207 ~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g-~~~~~~v~d~~~-L 280 (629)
.....+.+.+....+. +|||+|||+|.++..++++... ..++++|+++.+++.++++ + .++.+...+... +
T Consensus 6 ~~~~~~~~~~~~~~~~--~vldlG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 82 (124)
T TIGR02469 6 EVRALTLSKLRLRPGD--VLWDIGAGSGSITIEAARLVPN-GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEAL 82 (124)
T ss_pred HHHHHHHHHcCCCCCC--EEEEeCCCCCHHHHHHHHHCCC-ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccC
Confidence 3344455555544443 8999999999999999987543 3578889999999998753 2 346666666543 3
Q ss_pred CCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 281 PYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 281 p~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
+...++||+|++..... ....+++++.++|+|||+|++..
T Consensus 83 ~~~~~~~D~v~~~~~~~----~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 83 EDSLPEPDRVFIGGSGG----LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred hhhcCCCCEEEECCcch----hHHHHHHHHHHHcCCCCEEEEEe
Confidence 33346899999876542 23579999999999999999974
No 57
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.17 E-value=3.2e-10 Score=120.36 Aligned_cols=149 Identities=18% Similarity=0.182 Sum_probs=92.2
Q ss_pred HHHHHHHHhhcCcc-CCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC----------CCeEEEE
Q 006834 206 DAYIDNINELIPLT-GGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG----------VPAMIGV 274 (629)
Q Consensus 206 ~~~i~~I~~lL~~~-~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg----------~~~~~~v 274 (629)
...++.+.+.+... ...+.+|||+|||+|.++..|++++. .++++|+|+.|++.|+++. ..+.|.+
T Consensus 127 ~~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~---~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~ 203 (315)
T PLN02585 127 AQTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGA---IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEA 203 (315)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcccccccccceEEEE
Confidence 34455555555432 12245899999999999999999876 4566699999999998763 2356666
Q ss_pred ecCCCCCCCCCCeeEEEecCcccccccCH-HHHHHHHHhcccCCcEEEEEeCCCCcccc--------ccCccCcchhhhh
Q 006834 275 ISSKRLPYPARAFDMAHCSGCLIPWYMYD-GLYLLEVDRVLRPGGYWILSGPPIHWKKY--------WRGWERTKEDLKQ 345 (629)
Q Consensus 275 ~d~~~Lp~pd~sFDlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~liis~P~~~w~~~--------~~~w~~~~e~l~~ 345 (629)
.|...+ +++||+|+|..+++|+..+. ..++..+.+ +.+||.++ +..+..+... +.+.......+..
T Consensus 204 ~Dl~~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liI-s~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~ 278 (315)
T PLN02585 204 NDLESL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLII-SFAPKTLYYDILKRIGELFPGPSKATRAYLH 278 (315)
T ss_pred cchhhc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEE-EeCCcchHHHHHHHHHhhcCCCCcCceeeeC
Confidence 665433 57899999999998987443 345666664 45666544 4333322111 1111111111222
Q ss_pred HHHHHHHHHHHhcceee
Q 006834 346 EQDTIEDIAKRLCWKKL 362 (629)
Q Consensus 346 ~~~~ie~l~~~l~w~~v 362 (629)
..+.++++.+..+|+..
T Consensus 279 s~eel~~lL~~AGf~v~ 295 (315)
T PLN02585 279 AEADVERALKKAGWKVA 295 (315)
T ss_pred CHHHHHHHHHHCCCEEE
Confidence 34567777777777643
No 58
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.15 E-value=1.4e-10 Score=115.46 Aligned_cols=101 Identities=21% Similarity=0.259 Sum_probs=80.9
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C-CCeEEEEecC-CCCC--CCCCCeeEEEecC
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G-VPAMIGVISS-KRLP--YPARAFDMAHCSG 294 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g-~~~~~~v~d~-~~Lp--~pd~sFDlV~~s~ 294 (629)
..+|||+|||+|.++..|++.... ..++++|+|+.+++.|+++ + .++.+.++|. ..++ +++++||+|++.+
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~-~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPD-INFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCC-ccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 348999999999999999887532 3578889999999999864 2 3588888888 6666 7788999999876
Q ss_pred ccccccc--------CHHHHHHHHHhcccCCcEEEEEeC
Q 006834 295 CLIPWYM--------YDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 295 ~L~h~~~--------d~~~~L~el~RvLKPGG~liis~P 325 (629)
.. +|.. ....+++++.++|||||+|++..+
T Consensus 120 ~~-p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 120 PD-PWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD 157 (202)
T ss_pred CC-CCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC
Confidence 54 3421 135789999999999999999854
No 59
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.15 E-value=2.4e-10 Score=114.76 Aligned_cols=153 Identities=20% Similarity=0.246 Sum_probs=101.3
Q ss_pred hHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC------CCeEEEEecCC
Q 006834 205 ADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG------VPAMIGVISSK 278 (629)
Q Consensus 205 a~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg------~~~~~~v~d~~ 278 (629)
...+.+.+.+.+........+|||+|||+|.++..+++.+. .++++|+++++++.|+++. .++.+.+.|..
T Consensus 38 ~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~---~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~ 114 (219)
T TIGR02021 38 RAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGA---IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLL 114 (219)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChh
Confidence 34445556666652122345899999999999999998765 4577799999999998752 25778888877
Q ss_pred CCCCCCCCeeEEEecCccccccc-CHHHHHHHHHhcccCCcEEEEEeCCCCccccc----cCccC---cchhhhhHHHHH
Q 006834 279 RLPYPARAFDMAHCSGCLIPWYM-YDGLYLLEVDRVLRPGGYWILSGPPIHWKKYW----RGWER---TKEDLKQEQDTI 350 (629)
Q Consensus 279 ~Lp~pd~sFDlV~~s~~L~h~~~-d~~~~L~el~RvLKPGG~liis~P~~~w~~~~----~~w~~---~~e~l~~~~~~i 350 (629)
.++ ++||+|++..+++|+.. +...++.++.+++++++++.+. |...+.... ..|.. .........+.+
T Consensus 115 ~~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (219)
T TIGR02021 115 SLC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFA-PKTAWLAFLKMIGELFPGSSRATSAYLHPMTDL 190 (219)
T ss_pred hCC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC-CCchHHHHHHHHHhhCcCcccccceEEecHHHH
Confidence 765 78999999999888753 3567899999999877666553 322211100 00111 111112234567
Q ss_pred HHHHHHhcceeecc
Q 006834 351 EDIAKRLCWKKLIE 364 (629)
Q Consensus 351 e~l~~~l~w~~v~~ 364 (629)
+++++..+|+.+..
T Consensus 191 ~~~l~~~Gf~v~~~ 204 (219)
T TIGR02021 191 ERALGELGWKIVRE 204 (219)
T ss_pred HHHHHHcCceeeee
Confidence 77778877766543
No 60
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.14 E-value=4.9e-10 Score=111.83 Aligned_cols=110 Identities=15% Similarity=0.084 Sum_probs=81.8
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC--CeEEEEecCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV--PAMIGVISSKR 279 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~~~ 279 (629)
......+.+.+...++. +|||+|||+|..+..|++.......++++|+++++++.|+++ +. .+.+..+|...
T Consensus 58 p~~~~~~~~~l~~~~~~--~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~ 135 (205)
T PRK13944 58 PHMVAMMCELIEPRPGM--KILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKR 135 (205)
T ss_pred HHHHHHHHHhcCCCCCC--EEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCccc
Confidence 44456666766655444 899999999999998887532112467779999999998864 32 36788888766
Q ss_pred CCCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 280 LPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 280 Lp~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
......+||+|++...+.++. .++.++|+|||.|++..
T Consensus 136 ~~~~~~~fD~Ii~~~~~~~~~-------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 136 GLEKHAPFDAIIVTAAASTIP-------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred CCccCCCccEEEEccCcchhh-------HHHHHhcCcCcEEEEEE
Confidence 544567999999988875543 47889999999998864
No 61
>PRK06202 hypothetical protein; Provisional
Probab=99.14 E-value=4.1e-10 Score=114.07 Aligned_cols=98 Identities=17% Similarity=0.137 Sum_probs=77.1
Q ss_pred CCeEEEeCCCCchHHHHHHHc----CCcEeEEEeecCcHHHHHHHHHcC--CCeEEEEecCCCCCCCCCCeeEEEecCcc
Q 006834 223 IRTAVDTGCGVASWGAYLLKR----DILTMSFARRDTHEAQVQFALERG--VPAMIGVISSKRLPYPARAFDMAHCSGCL 296 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~----g~~~v~i~gvDiS~~~i~~A~erg--~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L 296 (629)
+.+|||+|||+|.++..|++. +. ...++++|+|+.|++.|+++. .++.+.+.+...++.++++||+|+|+.++
T Consensus 61 ~~~iLDlGcG~G~~~~~L~~~~~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~l 139 (232)
T PRK06202 61 PLTLLDIGCGGGDLAIDLARWARRDGL-RLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHFL 139 (232)
T ss_pred CcEEEEeccCCCHHHHHHHHHHHhCCC-CcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCee
Confidence 458999999999998888753 33 236788899999999998873 34666667777777778899999999999
Q ss_pred cccccC-HHHHHHHHHhcccCCcEEEEE
Q 006834 297 IPWYMY-DGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 297 ~h~~~d-~~~~L~el~RvLKPGG~liis 323 (629)
+|+.+. ...+++++.|+++ |.+++.
T Consensus 140 hh~~d~~~~~~l~~~~r~~~--~~~~i~ 165 (232)
T PRK06202 140 HHLDDAEVVRLLADSAALAR--RLVLHN 165 (232)
T ss_pred ecCChHHHHHHHHHHHHhcC--eeEEEe
Confidence 888733 2479999999998 455554
No 62
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.13 E-value=1.4e-09 Score=105.43 Aligned_cols=122 Identities=19% Similarity=0.177 Sum_probs=85.3
Q ss_pred CCCCCc-hHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCC-eEE
Q 006834 199 TTFPNG-ADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GVP-AMI 272 (629)
Q Consensus 199 t~f~~g-a~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~-~~~ 272 (629)
.+|..+ .+.-...|.+.+.... ..+|||+|||+|.++..+++++... .++++|+++.+++.++++ +.. +.+
T Consensus 9 gvFs~~~~d~~t~lL~~~l~~~~--~~~vLDlG~G~G~i~~~la~~~~~~-~v~~vDi~~~a~~~a~~n~~~n~~~~v~~ 85 (170)
T PF05175_consen 9 GVFSPPRLDAGTRLLLDNLPKHK--GGRVLDLGCGSGVISLALAKRGPDA-KVTAVDINPDALELAKRNAERNGLENVEV 85 (170)
T ss_dssp TSTTTTSHHHHHHHHHHHHHHHT--TCEEEEETSTTSHHHHHHHHTSTCE-EEEEEESBHHHHHHHHHHHHHTTCTTEEE
T ss_pred CeeCCCCCCHHHHHHHHHHhhcc--CCeEEEecCChHHHHHHHHHhCCCC-EEEEEcCCHHHHHHHHHHHHhcCcccccc
Confidence 345422 2333445555555443 3389999999999999999987753 477889999999999864 444 777
Q ss_pred EEecCCCCCCCCCCeeEEEecCcccccccC----HHHHHHHHHhcccCCcEEEEEe
Q 006834 273 GVISSKRLPYPARAFDMAHCSGCLIPWYMY----DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 273 ~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d----~~~~L~el~RvLKPGG~liis~ 324 (629)
...|... +.++++||+|+|+.-++.-..+ ...++.+..+.|+|||.|++..
T Consensus 86 ~~~d~~~-~~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 86 VQSDLFE-ALPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp EESSTTT-TCCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccc-cccccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEe
Confidence 7766543 2347899999999876333321 3568999999999999998874
No 63
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.12 E-value=3.5e-10 Score=117.67 Aligned_cols=110 Identities=22% Similarity=0.217 Sum_probs=83.7
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHH--Hc--CCC--eEEEEecCCCCCC
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFAL--ER--GVP--AMIGVISSKRLPY 282 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~--er--g~~--~~~~v~d~~~Lp~ 282 (629)
-+.+...++... +++|||||||+|.++..|+.+|+. .+.|+|.+.-.....+ ++ +.. +.+.-...+.+|.
T Consensus 104 W~rl~p~l~~L~--gk~VLDIGC~nGY~~frM~~~GA~--~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~ 179 (315)
T PF08003_consen 104 WDRLLPHLPDLK--GKRVLDIGCNNGYYSFRMLGRGAK--SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN 179 (315)
T ss_pred HHHHHhhhCCcC--CCEEEEecCCCcHHHHHHhhcCCC--EEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc
Confidence 345555554433 459999999999999999999976 3466698876554432 22 222 2333246778887
Q ss_pred CCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 283 PARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 283 pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
.++||+|+|..+|.|.. +|-..|.+++..|+|||.+++.+
T Consensus 180 -~~~FDtVF~MGVLYHrr-~Pl~~L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 180 -LGAFDTVFSMGVLYHRR-SPLDHLKQLKDSLRPGGELVLET 219 (315)
T ss_pred -cCCcCEEEEeeehhccC-CHHHHHHHHHHhhCCCCEEEEEE
Confidence 78999999999999988 89999999999999999999865
No 64
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.11 E-value=6.8e-10 Score=108.04 Aligned_cols=97 Identities=16% Similarity=0.118 Sum_probs=77.0
Q ss_pred CeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCCeEEEEecCCCCCCCCCCeeEEEecCccccc
Q 006834 224 RTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GVPAMIGVISSKRLPYPARAFDMAHCSGCLIPW 299 (629)
Q Consensus 224 ~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~ 299 (629)
.+|||+|||+|.++..+++.+. .++++|+++.+++.++++ +..+.+...|....+ .++||+|+++..+++.
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~ 95 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPL 95 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCCCCCC
Confidence 3799999999999999999876 467779999999999874 345667777765543 4589999999887655
Q ss_pred ccC--------------------HHHHHHHHHhcccCCcEEEEEeC
Q 006834 300 YMY--------------------DGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 300 ~~d--------------------~~~~L~el~RvLKPGG~liis~P 325 (629)
... ...++.++.++|+|||.+++..+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~ 141 (179)
T TIGR00537 96 EDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQS 141 (179)
T ss_pred cchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEe
Confidence 421 23579999999999999999853
No 65
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.10 E-value=1e-09 Score=115.19 Aligned_cols=95 Identities=21% Similarity=0.210 Sum_probs=71.6
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCC--eEEEEecCCCCCCCCCCeeEEEecCcc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GVP--AMIGVISSKRLPYPARAFDMAHCSGCL 296 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~--~~~~v~d~~~Lp~pd~sFDlV~~s~~L 296 (629)
+.+|||+|||+|.++..+++.+.. .++++|+++.+++.|+++ +.. +.+...+ ..+..+++||+|+++...
T Consensus 160 g~~VLDvGcGsG~lai~aa~~g~~--~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~--~~~~~~~~fDlVvan~~~ 235 (288)
T TIGR00406 160 DKNVIDVGCGSGILSIAALKLGAA--KVVGIDIDPLAVESARKNAELNQVSDRLQVKLIY--LEQPIEGKADVIVANILA 235 (288)
T ss_pred CCEEEEeCCChhHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHcCCCcceEEEecc--cccccCCCceEEEEecCH
Confidence 358999999999999998887653 567789999999999875 222 2333322 233446799999997643
Q ss_pred cccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 297 IPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 297 ~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
. ....++.++.++|||||++++++.
T Consensus 236 ~----~l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 236 E----VIKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred H----HHHHHHHHHHHHcCCCcEEEEEeC
Confidence 2 235789999999999999999863
No 66
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.10 E-value=1.2e-09 Score=118.38 Aligned_cols=112 Identities=14% Similarity=0.077 Sum_probs=82.2
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC----CeEEEEecCCCC
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV----PAMIGVISSKRL 280 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~----~~~~~v~d~~~L 280 (629)
.+.+.+.++...+ .+|||+|||+|.++..++++++. ..++++|+|+.+++.|+++ +. .+.+...|...
T Consensus 217 trllL~~lp~~~~--~~VLDLGCGtGvi~i~la~~~P~-~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~- 292 (378)
T PRK15001 217 ARFFMQHLPENLE--GEIVDLGCGNGVIGLTLLDKNPQ-AKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS- 292 (378)
T ss_pred HHHHHHhCCcccC--CeEEEEeccccHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccc-
Confidence 4455566654333 38999999999999999998653 3678889999999999864 21 35666655432
Q ss_pred CCCCCCeeEEEecCcccccc--cC--HHHHHHHHHhcccCCcEEEEEe
Q 006834 281 PYPARAFDMAHCSGCLIPWY--MY--DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 281 p~pd~sFDlV~~s~~L~h~~--~d--~~~~L~el~RvLKPGG~liis~ 324 (629)
.++.++||+|+|+..++.-. .+ ...++.++.++|+|||.|+++.
T Consensus 293 ~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 293 GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred cCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 23456899999998774322 11 2468999999999999999995
No 67
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.09 E-value=1e-09 Score=110.83 Aligned_cols=112 Identities=17% Similarity=0.233 Sum_probs=87.9
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCCeEEEEecCCCCC-CC
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GVPAMIGVISSKRLP-YP 283 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~~~~~v~d~~~Lp-~p 283 (629)
++.+...+...+ ..+|||+|||+|.++..+++.+. .++++|+++.+++.|+++ +..+.+...+...++ ..
T Consensus 37 ~~~l~~~~~~~~--~~~vLdiG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (233)
T PRK05134 37 LNYIREHAGGLF--GKRVLDVGCGGGILSESMARLGA---DVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEH 111 (233)
T ss_pred HHHHHHhccCCC--CCeEEEeCCCCCHHHHHHHHcCC---eEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhc
Confidence 455555554333 34899999999999999998865 467779999999998865 345666666665554 34
Q ss_pred CCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeCC
Q 006834 284 ARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPP 326 (629)
Q Consensus 284 d~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P~ 326 (629)
+++||+|+++.+++|.. ++..+|.++.++|+|||.++++.+.
T Consensus 112 ~~~fD~Ii~~~~l~~~~-~~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 112 PGQFDVVTCMEMLEHVP-DPASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred CCCccEEEEhhHhhccC-CHHHHHHHHHHHcCCCcEEEEEecC
Confidence 57999999999997776 7888999999999999999998754
No 68
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.08 E-value=1.1e-09 Score=110.55 Aligned_cols=97 Identities=16% Similarity=0.061 Sum_probs=77.9
Q ss_pred CeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHH-HcC----------------CCeEEEEecCCCCCCC-CC
Q 006834 224 RTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFAL-ERG----------------VPAMIGVISSKRLPYP-AR 285 (629)
Q Consensus 224 ~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~-erg----------------~~~~~~v~d~~~Lp~p-d~ 285 (629)
.+|||+|||.|..+.+|+++|..+ +++|+|+.+++.+. +++ ..+.+.++|...++.. ..
T Consensus 39 ~rvL~~gCG~G~da~~LA~~G~~V---~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~ 115 (218)
T PRK13255 39 SRVLVPLCGKSLDMLWLAEQGHEV---LGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLA 115 (218)
T ss_pred CeEEEeCCCChHhHHHHHhCCCeE---EEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCC
Confidence 489999999999999999999865 45599999999864 333 2466778888777533 36
Q ss_pred CeeEEEecCcccccccC-HHHHHHHHHhcccCCcEEEEE
Q 006834 286 AFDMAHCSGCLIPWYMY-DGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 286 sFDlV~~s~~L~h~~~d-~~~~L~el~RvLKPGG~liis 323 (629)
.||+|+...+++|++.+ ...++..+.++|+|||++++.
T Consensus 116 ~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~ 154 (218)
T PRK13255 116 DVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLV 154 (218)
T ss_pred CeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 89999998888888755 467999999999999975553
No 69
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.07 E-value=2.6e-09 Score=104.85 Aligned_cols=95 Identities=19% Similarity=0.227 Sum_probs=74.5
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCCCCCCCCCeeEEEecCccc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKRLPYPARAFDMAHCSGCLI 297 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~ 297 (629)
+.+|||+|||+|.++..++..... ..++++|.++.|++.++++ +. ++.+..+|...++ ..++||+|++.. ++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~-~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~~ 119 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPE-LKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-LA 119 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCC-CeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-hh
Confidence 448999999999999998876532 3467889999999887643 33 5788888887764 357999999865 32
Q ss_pred ccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 298 PWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 298 h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
+...++..+.++|+|||.+++..
T Consensus 120 ----~~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 120 ----SLNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred ----CHHHHHHHHHHhcCCCCEEEEEc
Confidence 44568899999999999999873
No 70
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.07 E-value=1.5e-09 Score=116.51 Aligned_cols=114 Identities=14% Similarity=0.099 Sum_probs=83.4
Q ss_pred HHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCCeEEEEecCCCCCC
Q 006834 207 AYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GVPAMIGVISSKRLPY 282 (629)
Q Consensus 207 ~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~~~~~v~d~~~Lp~ 282 (629)
.-.+.+.+.++.... .+|||+|||+|.++..+++++.. ..++++|+++.+++.|+++ +....+...|... .
T Consensus 183 ~gt~lLl~~l~~~~~--g~VLDlGCG~G~ls~~la~~~p~-~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~--~ 257 (342)
T PRK09489 183 VGSQLLLSTLTPHTK--GKVLDVGCGAGVLSAVLARHSPK-IRLTLSDVSAAALESSRATLAANGLEGEVFASNVFS--D 257 (342)
T ss_pred HHHHHHHHhccccCC--CeEEEeccCcCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCEEEEccccc--c
Confidence 334455555543322 37999999999999999988653 3577889999999999853 4455565555433 2
Q ss_pred CCCCeeEEEecCccccccc----CHHHHHHHHHhcccCCcEEEEEeC
Q 006834 283 PARAFDMAHCSGCLIPWYM----YDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 283 pd~sFDlV~~s~~L~h~~~----d~~~~L~el~RvLKPGG~liis~P 325 (629)
.++.||+|+|+..+|.... ....++.++.+.|||||.|+++.+
T Consensus 258 ~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 258 IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 3578999999998854321 236799999999999999999864
No 71
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.06 E-value=1.6e-09 Score=108.84 Aligned_cols=111 Identities=14% Similarity=0.036 Sum_probs=83.7
Q ss_pred hHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C-CCeEEEEecCCC
Q 006834 205 ADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G-VPAMIGVISSKR 279 (629)
Q Consensus 205 a~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g-~~~~~~v~d~~~ 279 (629)
+......+.+.+...++. +|||||||+|.++..|++.......++++|+++++++.|+++ + .++.+..+|...
T Consensus 61 ~p~~~~~~~~~l~~~~g~--~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~ 138 (212)
T PRK13942 61 AIHMVAIMCELLDLKEGM--KVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTL 138 (212)
T ss_pred cHHHHHHHHHHcCCCCcC--EEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCccc
Confidence 355566677777665555 999999999999998887632223567779999999999875 3 257888888776
Q ss_pred CCCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 280 LPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 280 Lp~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
...+.+.||+|++.....+. ...+.+.|||||.|++..
T Consensus 139 ~~~~~~~fD~I~~~~~~~~~-------~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 139 GYEENAPYDRIYVTAAGPDI-------PKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CCCcCCCcCEEEECCCcccc-------hHHHHHhhCCCcEEEEEE
Confidence 65567899999997765433 246677899999999863
No 72
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.05 E-value=2e-09 Score=108.07 Aligned_cols=110 Identities=15% Similarity=0.085 Sum_probs=81.9
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C-CCeEEEEecCCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G-VPAMIGVISSKRL 280 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g-~~~~~~v~d~~~L 280 (629)
......+.+.+...++. +|||+|||+|.++..|++.......++++|+++++++.|+++ + .++.+..+|....
T Consensus 63 p~~~~~~~~~l~~~~~~--~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~ 140 (215)
T TIGR00080 63 PHMVAMMTELLELKPGM--KVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQG 140 (215)
T ss_pred HHHHHHHHHHhCCCCcC--EEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccC
Confidence 34456666777665555 999999999999999998754322467779999999999865 3 3577888887655
Q ss_pred CCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 281 PYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 281 p~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
......||+|++.....+. ...+.+.|+|||++++..
T Consensus 141 ~~~~~~fD~Ii~~~~~~~~-------~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 141 WEPLAPYDRIYVTAAGPKI-------PEALIDQLKEGGILVMPV 177 (215)
T ss_pred CcccCCCCEEEEcCCcccc-------cHHHHHhcCcCcEEEEEE
Confidence 4445689999987655333 356788999999999864
No 73
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.05 E-value=7.9e-10 Score=109.36 Aligned_cols=99 Identities=19% Similarity=0.247 Sum_probs=78.9
Q ss_pred CeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C-CCeEEEEecCCCCC---CCCCCeeEEEecCc
Q 006834 224 RTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G-VPAMIGVISSKRLP---YPARAFDMAHCSGC 295 (629)
Q Consensus 224 ~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g-~~~~~~v~d~~~Lp---~pd~sFDlV~~s~~ 295 (629)
.+|||||||+|.++..++++... ..++++|+++.+++.|+++ + .++.+..+|+..++ +++++||.|++++.
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p~-~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~p 96 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNPD-KNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFP 96 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCCC-CCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECC
Confidence 48999999999999999988653 3678889999999998754 2 36888888886654 45679999998765
Q ss_pred ccccccCH--------HHHHHHHHhcccCCcEEEEEe
Q 006834 296 LIPWYMYD--------GLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 296 L~h~~~d~--------~~~L~el~RvLKPGG~liis~ 324 (629)
. +|.... ..++.++.|+|||||.|++.+
T Consensus 97 d-pw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 97 D-PWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred C-cCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 4 554321 468999999999999999985
No 74
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.04 E-value=1.5e-09 Score=111.60 Aligned_cols=95 Identities=23% Similarity=0.169 Sum_probs=67.5
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCCCeeEEEecCcccccccC
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMY 302 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d 302 (629)
+.+|||+|||+|.++..+++.+.. .++++|+++.+++.|+++.....+ .+...++..+.+||+|+++.... .
T Consensus 120 ~~~VLDiGcGsG~l~i~~~~~g~~--~v~giDis~~~l~~A~~n~~~~~~--~~~~~~~~~~~~fD~Vvani~~~----~ 191 (250)
T PRK00517 120 GKTVLDVGCGSGILAIAAAKLGAK--KVLAVDIDPQAVEAARENAELNGV--ELNVYLPQGDLKADVIVANILAN----P 191 (250)
T ss_pred CCEEEEeCCcHHHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHcCC--CceEEEccCCCCcCEEEEcCcHH----H
Confidence 458999999999999988887764 367789999999999876211000 00011122223799999875431 2
Q ss_pred HHHHHHHHHhcccCCcEEEEEeC
Q 006834 303 DGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 303 ~~~~L~el~RvLKPGG~liis~P 325 (629)
...++.++.++|||||++++++.
T Consensus 192 ~~~l~~~~~~~LkpgG~lilsgi 214 (250)
T PRK00517 192 LLELAPDLARLLKPGGRLILSGI 214 (250)
T ss_pred HHHHHHHHHHhcCCCcEEEEEEC
Confidence 35688999999999999999853
No 75
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.04 E-value=5.6e-10 Score=100.16 Aligned_cols=100 Identities=24% Similarity=0.372 Sum_probs=79.2
Q ss_pred CeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C--CCeEEEEecCCCCC--CCCCCeeEEEecCc
Q 006834 224 RTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G--VPAMIGVISSKRLP--YPARAFDMAHCSGC 295 (629)
Q Consensus 224 ~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g--~~~~~~v~d~~~Lp--~pd~sFDlV~~s~~ 295 (629)
.+|||+|||+|.++..+++.+ ...++++|+++..++.|+++ + .++.+.+.|..... +++++||+|+++..
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 489999999999999999998 33677889999999999865 2 35889999987765 77899999999887
Q ss_pred ccccccC-------HHHHHHHHHhcccCCcEEEEEeC
Q 006834 296 LIPWYMY-------DGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 296 L~h~~~d-------~~~~L~el~RvLKPGG~liis~P 325 (629)
+...... ...+++++.++|||||.+++..|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 7543211 24689999999999999999865
No 76
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.04 E-value=4.2e-09 Score=105.50 Aligned_cols=101 Identities=20% Similarity=0.244 Sum_probs=83.0
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCCCCCC-CCCeeEEEecCcc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKRLPYP-ARAFDMAHCSGCL 296 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~Lp~p-d~sFDlV~~s~~L 296 (629)
..+|||+|||+|.++..+++.+.. ++++|+++.+++.++++ +. ++.+...+...++.. .++||+|++..++
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~~~---v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLGAN---VTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcCCe---EEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 458999999999999999887654 56779999999998864 33 477777777666544 4789999999999
Q ss_pred cccccCHHHHHHHHHhcccCCcEEEEEeCCC
Q 006834 297 IPWYMYDGLYLLEVDRVLRPGGYWILSGPPI 327 (629)
Q Consensus 297 ~h~~~d~~~~L~el~RvLKPGG~liis~P~~ 327 (629)
+|.. ++..++.++.++|+|||.++++.+..
T Consensus 123 ~~~~-~~~~~l~~~~~~L~~gG~l~i~~~~~ 152 (224)
T TIGR01983 123 EHVP-DPQAFIRACAQLLKPGGILFFSTINR 152 (224)
T ss_pred HhCC-CHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 7766 88899999999999999999987543
No 77
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=3.1e-09 Score=110.76 Aligned_cols=133 Identities=22% Similarity=0.242 Sum_probs=94.9
Q ss_pred CCeeeecCCCCCCCCch-HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc-
Q 006834 189 GHRFRFPGGGTTFPNGA-DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER- 266 (629)
Q Consensus 189 g~~~~Fpgggt~f~~ga-~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er- 266 (629)
+..+.|-+...+|..+. +.-.+.+.+.++...+. +|||+|||.|.++..|++..+ ...++-+|++..+++.|+++
T Consensus 126 ~~~~~~~t~pGVFS~~~lD~GS~lLl~~l~~~~~~--~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl 202 (300)
T COG2813 126 GHELTFKTLPGVFSRDKLDKGSRLLLETLPPDLGG--KVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNL 202 (300)
T ss_pred cCceEEEeCCCCCcCCCcChHHHHHHHhCCccCCC--cEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhH
Confidence 44455555556664443 44466777777765444 899999999999999999987 34788899999999999865
Q ss_pred ---CCCeEEEEecCCCCCCCCCCeeEEEecCcccccccCHH----HHHHHHHhcccCCcEEEEEeC
Q 006834 267 ---GVPAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMYDG----LYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 267 ---g~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d~~----~~L~el~RvLKPGG~liis~P 325 (629)
+++...+..+..-.+..+ +||+|+|+.-+|.-..-.. +++.+..+.|++||.|+|+..
T Consensus 203 ~~N~~~~~~v~~s~~~~~v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 203 AANGVENTEVWASNLYEPVEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred HHcCCCccEEEEecccccccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 333312223333334444 9999999998843332223 789999999999999999964
No 78
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.03 E-value=6.1e-09 Score=102.09 Aligned_cols=111 Identities=14% Similarity=0.023 Sum_probs=80.9
Q ss_pred hHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C-CCeEEEEecCCC
Q 006834 205 ADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G-VPAMIGVISSKR 279 (629)
Q Consensus 205 a~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g-~~~~~~v~d~~~ 279 (629)
.+.....+.+.+....+. +|||+|||+|.++..+++++.. ..++++|+++.+++.|+++ + .++.+...+..
T Consensus 16 ~~~~r~~~~~~l~~~~~~--~vLDiG~G~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~- 91 (187)
T PRK08287 16 KEEVRALALSKLELHRAK--HLIDVGAGTGSVSIEAALQFPS-LQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAP- 91 (187)
T ss_pred hHHHHHHHHHhcCCCCCC--EEEEECCcCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCch-
Confidence 344444555666554444 8999999999999999987542 3577889999999999764 2 24666666553
Q ss_pred CCCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 280 LPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 280 Lp~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
.++ .++||+|++..... ....++.++.++|+|||++++..
T Consensus 92 ~~~-~~~~D~v~~~~~~~----~~~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 92 IEL-PGKADAIFIGGSGG----NLTAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred hhc-CcCCCEEEECCCcc----CHHHHHHHHHHhcCCCeEEEEEE
Confidence 233 36899999876542 34568999999999999998864
No 79
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.03 E-value=4.4e-09 Score=103.75 Aligned_cols=105 Identities=26% Similarity=0.226 Sum_probs=78.0
Q ss_pred HHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCC-C-CCCCCCe
Q 006834 210 DNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKR-L-PYPARAF 287 (629)
Q Consensus 210 ~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~-L-p~pd~sF 287 (629)
+.+.+.++ + ..+|||+|||+|.++..+++... ..++++|+++++++.|++++ +.+.+.+... + ++++++|
T Consensus 5 ~~i~~~i~--~--~~~iLDiGcG~G~~~~~l~~~~~--~~~~giD~s~~~i~~a~~~~--~~~~~~d~~~~l~~~~~~sf 76 (194)
T TIGR02081 5 ESILNLIP--P--GSRVLDLGCGDGELLALLRDEKQ--VRGYGIEIDQDGVLACVARG--VNVIQGDLDEGLEAFPDKSF 76 (194)
T ss_pred HHHHHhcC--C--CCEEEEeCCCCCHHHHHHHhccC--CcEEEEeCCHHHHHHHHHcC--CeEEEEEhhhcccccCCCCc
Confidence 34555543 2 33899999999999998876532 13467799999999998765 4566667654 4 4778899
Q ss_pred eEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeCC
Q 006834 288 DMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPP 326 (629)
Q Consensus 288 DlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P~ 326 (629)
|+|+|+.+++|.. ++..+|+++.|+++ ..+++.|+
T Consensus 77 D~Vi~~~~l~~~~-d~~~~l~e~~r~~~---~~ii~~p~ 111 (194)
T TIGR02081 77 DYVILSQTLQATR-NPEEILDEMLRVGR---HAIVSFPN 111 (194)
T ss_pred CEEEEhhHhHcCc-CHHHHHHHHHHhCC---eEEEEcCC
Confidence 9999999997776 88899999988765 44555554
No 80
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.02 E-value=1.7e-10 Score=98.53 Aligned_cols=91 Identities=24% Similarity=0.356 Sum_probs=66.6
Q ss_pred EeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcccc---eeccccccCCCCC-cccceeeccccccccCCCc
Q 006834 484 MDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGLIG---TYQDWCEAFSTYP-RTYDLIHASGVFSIYQDRC 559 (629)
Q Consensus 484 lD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergli~---~~~~~~e~f~~yp-~t~Dl~H~~~~fs~~~~~c 559 (629)
||+|||.|-+++.|.+++. .+|+.+|.++.+++.+.++.--. ..+.=-+.+ ++| ++||+|++.++|... .
T Consensus 1 LdiG~G~G~~~~~l~~~~~--~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l-~~~~~sfD~v~~~~~~~~~---~ 74 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGG--ASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDL-PFPDNSFDVVFSNSVLHHL---E 74 (95)
T ss_dssp EEET-TTSHHHHHHHHTTT--CEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSS-SS-TT-EEEEEEESHGGGS---S
T ss_pred CEecCcCCHHHHHHHhccC--CEEEEEeCCHHHHHHHHhcccccCchheeehHHhC-ccccccccccccccceeec---c
Confidence 8999999999999999832 35555566667888888877633 232112333 333 999999999988876 5
Q ss_pred CHHHHHHHHhhcccCCcEEEE
Q 006834 560 DITNILLEMDRILRPEGTVIF 580 (629)
Q Consensus 560 ~~~~~l~e~dRiLrPgG~~i~ 580 (629)
+.+.+|.|+.|+|||||+++|
T Consensus 75 ~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 75 DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHHEEEEEEEEE
T ss_pred CHHHHHHHHHHHcCcCeEEeC
Confidence 678999999999999999987
No 81
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.00 E-value=2.3e-09 Score=107.52 Aligned_cols=94 Identities=16% Similarity=0.054 Sum_probs=71.3
Q ss_pred CeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCC--------CCCCCeeEEEecCc
Q 006834 224 RTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLP--------YPARAFDMAHCSGC 295 (629)
Q Consensus 224 ~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp--------~pd~sFDlV~~s~~ 295 (629)
.+|||+|||+|.++..++++......++++|+++ + ....++.+.++|....+ +.+++||+|+|..+
T Consensus 53 ~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~-----~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~ 126 (209)
T PRK11188 53 MTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M-----DPIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMA 126 (209)
T ss_pred CEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c-----cCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCC
Confidence 4899999999999999998753333567789987 2 12245788888877753 56789999999776
Q ss_pred ccccccCH-----------HHHHHHHHhcccCCcEEEEEe
Q 006834 296 LIPWYMYD-----------GLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 296 L~h~~~d~-----------~~~L~el~RvLKPGG~liis~ 324 (629)
. ++..++ ..+|.++.++|||||.|++..
T Consensus 127 ~-~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~ 165 (209)
T PRK11188 127 P-NMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKV 165 (209)
T ss_pred C-ccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 5 333221 358999999999999999974
No 82
>PRK14967 putative methyltransferase; Provisional
Probab=99.00 E-value=7.4e-09 Score=104.51 Aligned_cols=99 Identities=19% Similarity=0.118 Sum_probs=74.0
Q ss_pred CeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCCeEEEEecCCCCCCCCCCeeEEEecCccccc
Q 006834 224 RTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GVPAMIGVISSKRLPYPARAFDMAHCSGCLIPW 299 (629)
Q Consensus 224 ~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~ 299 (629)
.+|||+|||+|.++..++..+.. .++++|+++.+++.|+++ +.++.+...|... .+++++||+|+++..+.+-
T Consensus 38 ~~vLDlGcG~G~~~~~la~~~~~--~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~ 114 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAAGAG--SVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPYVPA 114 (223)
T ss_pred CeEEEecCCHHHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh-hccCCCeeEEEECCCCCCC
Confidence 48999999999999999987542 567789999999988764 4456666666654 3456799999997644322
Q ss_pred ccC--------------------HHHHHHHHHhcccCCcEEEEEeC
Q 006834 300 YMY--------------------DGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 300 ~~d--------------------~~~~L~el~RvLKPGG~liis~P 325 (629)
... ...++.++.++|||||.+++..+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~ 160 (223)
T PRK14967 115 PPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQS 160 (223)
T ss_pred CcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 110 23578889999999999998754
No 83
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.99 E-value=2.8e-09 Score=115.45 Aligned_cols=99 Identities=21% Similarity=0.290 Sum_probs=80.5
Q ss_pred CeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C-CCeEEEEecCCCC--CCCCCCeeEEEecCcc
Q 006834 224 RTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G-VPAMIGVISSKRL--PYPARAFDMAHCSGCL 296 (629)
Q Consensus 224 ~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g-~~~~~~v~d~~~L--p~pd~sFDlV~~s~~L 296 (629)
..+||||||+|.++..++.+.+. ..++|+|+++.+++.|.++ + .++.+..+|+..+ .++++++|.|++++..
T Consensus 124 p~vLEIGcGsG~~ll~lA~~~P~-~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFPd 202 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAKNNPN-KLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFPV 202 (390)
T ss_pred CeEEEEcCcccHHHHHHHHhCCC-CCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCCC
Confidence 38999999999999999998753 3678889999998888754 3 3678888887654 4788999999987654
Q ss_pred cccccCH------HHHHHHHHhcccCCcEEEEEe
Q 006834 297 IPWYMYD------GLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 297 ~h~~~d~------~~~L~el~RvLKPGG~liis~ 324 (629)
+|.... ..++.++.|+|+|||.+.+.+
T Consensus 203 -PW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 203 -PWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred -CccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 665332 479999999999999999985
No 84
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.99 E-value=1.1e-09 Score=109.86 Aligned_cols=95 Identities=20% Similarity=0.204 Sum_probs=70.6
Q ss_pred CeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEE----EEecCCCCCCC--CCCeeEEEecCccc
Q 006834 224 RTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMI----GVISSKRLPYP--ARAFDMAHCSGCLI 297 (629)
Q Consensus 224 ~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~----~v~d~~~Lp~p--d~sFDlV~~s~~L~ 297 (629)
+.++|+|||+|..+..++++.-. ++++|+|++|++.|++....... ...+.+-.++. ++|.|+|+|..|+
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k~---VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~- 110 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYKE---VIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAV- 110 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhhh---heeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhH-
Confidence 37999999999877777777543 45669999999999876432111 11122223433 8999999999999
Q ss_pred ccccCHHHHHHHHHhcccCCcEEEEE
Q 006834 298 PWYMYDGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 298 h~~~d~~~~L~el~RvLKPGG~liis 323 (629)
||. +.+.+++++.|+||+.|-++..
T Consensus 111 HWF-dle~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 111 HWF-DLERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred Hhh-chHHHHHHHHHHcCCCCCEEEE
Confidence 998 8899999999999997744444
No 85
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.97 E-value=1.4e-09 Score=116.10 Aligned_cols=105 Identities=26% Similarity=0.306 Sum_probs=76.5
Q ss_pred CCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC---------------CCeEEEEecCCCC----CC
Q 006834 222 NIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG---------------VPAMIGVISSKRL----PY 282 (629)
Q Consensus 222 ~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg---------------~~~~~~v~d~~~L----p~ 282 (629)
...+|||+|||-|.-+.-....++. .++|+|++...|+.|++|. ..+.+..+|.... .+
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~--~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIK--HYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-S--EEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCC--EEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 4559999999999877777777654 5688899999999999875 2356677665432 13
Q ss_pred C--CCCeeEEEecCcccccccCH---HHHHHHHHhcccCCcEEEEEeCCCC
Q 006834 283 P--ARAFDMAHCSGCLIPWYMYD---GLYLLEVDRVLRPGGYWILSGPPIH 328 (629)
Q Consensus 283 p--d~sFDlV~~s~~L~h~~~d~---~~~L~el~RvLKPGG~liis~P~~~ 328 (629)
+ ...||+|-|.+++|+..+.. ..+|..+.+.|+|||+|+.+.|+.+
T Consensus 140 ~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~ 190 (331)
T PF03291_consen 140 PPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSD 190 (331)
T ss_dssp SSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH
T ss_pred cccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHH
Confidence 3 35999999999997777553 3589999999999999999987554
No 86
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.97 E-value=6.6e-09 Score=100.33 Aligned_cols=101 Identities=22% Similarity=0.296 Sum_probs=80.2
Q ss_pred eEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHH----cCCC--eEEEEecCCCCCCCCCCeeEEEecCcc--
Q 006834 225 TAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALE----RGVP--AMIGVISSKRLPYPARAFDMAHCSGCL-- 296 (629)
Q Consensus 225 ~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~e----rg~~--~~~~v~d~~~Lp~pd~sFDlV~~s~~L-- 296 (629)
+|||+|||+|.+...|++.+... .++|+|.|+.+++.|+. ++.+ +.|.++|...-.+..+.||+|+--..+
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~-~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DA 148 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQS-KLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDA 148 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCC-CccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceee
Confidence 89999999999999999998764 37899999999999873 2433 899999988777888999999964333
Q ss_pred ---cccccC--HHHHHHHHHhcccCCcEEEEEeCC
Q 006834 297 ---IPWYMY--DGLYLLEVDRVLRPGGYWILSGPP 326 (629)
Q Consensus 297 ---~h~~~d--~~~~L~el~RvLKPGG~liis~P~ 326 (629)
++-..+ +..++..+.++|+|||+|+|...+
T Consensus 149 isLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN 183 (227)
T KOG1271|consen 149 ISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCN 183 (227)
T ss_pred eecCCCCcccceeeehhhHhhccCCCcEEEEEecC
Confidence 211111 245899999999999999998643
No 87
>PRK04266 fibrillarin; Provisional
Probab=98.96 E-value=1.4e-08 Score=103.23 Aligned_cols=104 Identities=11% Similarity=0.038 Sum_probs=73.8
Q ss_pred hcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc---CCCeEEEEecCCCC----CCCCCCe
Q 006834 215 LIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER---GVPAMIGVISSKRL----PYPARAF 287 (629)
Q Consensus 215 lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er---g~~~~~~v~d~~~L----p~pd~sF 287 (629)
.+...++. +|||+|||+|.++..|++... .-.++++|+++.|++.+.++ ..++.+..+|.... ++ .++|
T Consensus 67 ~l~i~~g~--~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l-~~~~ 142 (226)
T PRK04266 67 NFPIKKGS--KVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHV-VEKV 142 (226)
T ss_pred hCCCCCCC--EEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhc-cccC
Confidence 45655555 999999999999999998743 22577889999988855433 14567777776531 22 3569
Q ss_pred eEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 288 DMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 288 DlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
|+|++.... +.....++.++.|+|||||.++++.+
T Consensus 143 D~i~~d~~~---p~~~~~~L~~~~r~LKpGG~lvI~v~ 177 (226)
T PRK04266 143 DVIYQDVAQ---PNQAEIAIDNAEFFLKDGGYLLLAIK 177 (226)
T ss_pred CEEEECCCC---hhHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 999964321 11124568999999999999999754
No 88
>PLN03075 nicotianamine synthase; Provisional
Probab=98.96 E-value=4.2e-09 Score=110.38 Aligned_cols=102 Identities=13% Similarity=0.125 Sum_probs=79.9
Q ss_pred CCCeEEEeCCCCchHHHHHHH-cCCcEeEEEeecCcHHHHHHHHHcC-------CCeEEEEecCCCCCCCCCCeeEEEec
Q 006834 222 NIRTAVDTGCGVASWGAYLLK-RDILTMSFARRDTHEAQVQFALERG-------VPAMIGVISSKRLPYPARAFDMAHCS 293 (629)
Q Consensus 222 ~~~~VLDIGCGtG~~a~~La~-~g~~~v~i~gvDiS~~~i~~A~erg-------~~~~~~v~d~~~Lp~pd~sFDlV~~s 293 (629)
.+++|+|||||.|.++..++. .......++++|.++++++.|++.. ..+.|.++|....+...+.||+|+|.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 355899999998855444433 3223346788899999999998642 34889998887764335789999999
Q ss_pred Ccccccc-cCHHHHHHHHHhcccCCcEEEEEe
Q 006834 294 GCLIPWY-MYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 294 ~~L~h~~-~d~~~~L~el~RvLKPGG~liis~ 324 (629)
++++|. .++..++..+.+.|+|||++++..
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 888884 568899999999999999999975
No 89
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.96 E-value=5.3e-09 Score=110.48 Aligned_cols=111 Identities=17% Similarity=0.142 Sum_probs=84.2
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C--CCeEEEEecCCCCCC
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G--VPAMIGVISSKRLPY 282 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g--~~~~~~v~d~~~Lp~ 282 (629)
.+.+.+.+...+. .+|||||||+|.++..++++.+. ..++++|. +.+++.++++ + .++.+..+|....++
T Consensus 138 ~~~l~~~~~~~~~--~~vlDiG~G~G~~~~~~~~~~p~-~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~ 213 (306)
T TIGR02716 138 IQLLLEEAKLDGV--KKMIDVGGGIGDISAAMLKHFPE-LDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY 213 (306)
T ss_pred HHHHHHHcCCCCC--CEEEEeCCchhHHHHHHHHHCCC-CEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCC
Confidence 3445555544333 49999999999999999998753 35667797 6888888754 3 247788888776666
Q ss_pred CCCCeeEEEecCcccccccCH-HHHHHHHHhcccCCcEEEEEeC
Q 006834 283 PARAFDMAHCSGCLIPWYMYD-GLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 283 pd~sFDlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~liis~P 325 (629)
+. +|+|+++.++|+|..+. ..+|+++.++|+|||.+++...
T Consensus 214 ~~--~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 214 PE--ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred CC--CCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 53 69999999998887442 5799999999999999999753
No 90
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.96 E-value=4e-09 Score=110.86 Aligned_cols=118 Identities=24% Similarity=0.222 Sum_probs=79.2
Q ss_pred CCCCCchHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCCeEEEE
Q 006834 199 TTFPNGADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GVPAMIGV 274 (629)
Q Consensus 199 t~f~~ga~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~~~~~v 274 (629)
..|..|.........+++......+.+|||+|||+|.++...++.|.. .+.++|+++.+++.|+++ +....+.+
T Consensus 138 ~AFGTG~H~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~--~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v 215 (295)
T PF06325_consen 138 MAFGTGHHPTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAK--KVVAIDIDPLAVEAARENAELNGVEDRIEV 215 (295)
T ss_dssp SSS-SSHCHHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBS--EEEEEESSCHHHHHHHHHHHHTT-TTCEEE
T ss_pred CcccCCCCHHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCC--eEEEecCCHHHHHHHHHHHHHcCCCeeEEE
Confidence 345555555444444444333333459999999999999999999875 457779999999999875 33333433
Q ss_pred ecCCCCCCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 275 ISSKRLPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 275 ~d~~~Lp~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
.. ......+.||+|+++-.... ...++..+.++|+|||+|++++
T Consensus 216 ~~--~~~~~~~~~dlvvANI~~~v----L~~l~~~~~~~l~~~G~lIlSG 259 (295)
T PF06325_consen 216 SL--SEDLVEGKFDLVVANILADV----LLELAPDIASLLKPGGYLILSG 259 (295)
T ss_dssp SC--TSCTCCS-EEEEEEES-HHH----HHHHHHHCHHHEEEEEEEEEEE
T ss_pred EE--ecccccccCCEEEECCCHHH----HHHHHHHHHHhhCCCCEEEEcc
Confidence 22 22334589999998765421 2467888999999999999996
No 91
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.96 E-value=2.4e-08 Score=101.48 Aligned_cols=115 Identities=18% Similarity=0.208 Sum_probs=83.3
Q ss_pred hHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCC
Q 006834 205 ADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKR 279 (629)
Q Consensus 205 a~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~ 279 (629)
...+++.+.+.+.. ...+|||+|||+|.++..+++.... ..++++|+++.+++.|+++ +. ++.+..+|...
T Consensus 73 ~~~l~~~~l~~~~~---~~~~ilDig~G~G~~~~~l~~~~~~-~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~ 148 (251)
T TIGR03534 73 TEELVEAALERLKK---GPLRVLDLGTGSGAIALALAKERPD-ARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE 148 (251)
T ss_pred hHHHHHHHHHhccc---CCCeEEEEeCcHhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc
Confidence 45556666665542 2348999999999999999987432 3567889999999999864 33 37777777655
Q ss_pred CCCCCCCeeEEEecCccccc------ccC-------------------HHHHHHHHHhcccCCcEEEEEe
Q 006834 280 LPYPARAFDMAHCSGCLIPW------YMY-------------------DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 280 Lp~pd~sFDlV~~s~~L~h~------~~d-------------------~~~~L~el~RvLKPGG~liis~ 324 (629)
++++++||+|+|+..+... ..+ ...++.++.++|+|||.+++..
T Consensus 149 -~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 149 -PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred -cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 4567899999996554321 100 1257889999999999999974
No 92
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.95 E-value=5e-09 Score=110.67 Aligned_cols=102 Identities=13% Similarity=0.048 Sum_probs=74.5
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C--CCeEEEEecCCC-CCCCCC----CeeEEE
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G--VPAMIGVISSKR-LPYPAR----AFDMAH 291 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g--~~~~~~v~d~~~-Lp~pd~----sFDlV~ 291 (629)
+.+|||+|||+|..+..|++.......++++|+|++|++.|+++ . .++.+.++|... ++++.. ...+++
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~ 143 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFF 143 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEE
Confidence 34899999999999999998854334678889999999998865 2 345667788765 344432 234455
Q ss_pred ecCcccccccC-HHHHHHHHHhcccCCcEEEEEe
Q 006834 292 CSGCLIPWYMY-DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 292 ~s~~L~h~~~d-~~~~L~el~RvLKPGG~liis~ 324 (629)
+...+.++..+ ...+|+++.++|+|||.|++..
T Consensus 144 ~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 144 PGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred ecccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 55566555432 4569999999999999999975
No 93
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.95 E-value=2.3e-10 Score=113.85 Aligned_cols=134 Identities=17% Similarity=0.176 Sum_probs=95.3
Q ss_pred CCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCC-C-CCCCCeeEEEecCcccc
Q 006834 221 GNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRL-P-YPARAFDMAHCSGCLIP 298 (629)
Q Consensus 221 g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~L-p-~pd~sFDlV~~s~~L~h 298 (629)
+.-+++||+|||||..+..|..+-- .++|+|+|++|++.|.+++.--.+.+++...+ + ..++.||+|.+..++..
T Consensus 124 g~F~~~lDLGCGTGL~G~~lR~~a~---~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~Y 200 (287)
T COG4976 124 GPFRRMLDLGCGTGLTGEALRDMAD---RLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVLPY 200 (287)
T ss_pred CccceeeecccCcCcccHhHHHHHh---hccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhHHHh
Confidence 3367999999999999999988743 56788999999999999986444444444322 2 45678999999999955
Q ss_pred cccCHHHHHHHHHhcccCCcEEEEEeC--CCCccccccCccCcchhhhhHHHHHHHHHHHhcceee
Q 006834 299 WYMYDGLYLLEVDRVLRPGGYWILSGP--PIHWKKYWRGWERTKEDLKQEQDTIEDIAKRLCWKKL 362 (629)
Q Consensus 299 ~~~d~~~~L~el~RvLKPGG~liis~P--~~~w~~~~~~w~~~~e~l~~~~~~ie~l~~~l~w~~v 362 (629)
+- +.+.++.-+...|+|||.|.+++- +..|... -.+...+-....++....+.-+++.+
T Consensus 201 lG-~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~----l~ps~RyAH~~~YVr~~l~~~Gl~~i 261 (287)
T COG4976 201 LG-ALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFV----LGPSQRYAHSESYVRALLAASGLEVI 261 (287)
T ss_pred hc-chhhHHHHHHHhcCCCceEEEEecccCCCCCee----cchhhhhccchHHHHHHHHhcCceEE
Confidence 54 888999999999999999999863 1222111 11222233345566677777666554
No 94
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.94 E-value=5.8e-09 Score=104.81 Aligned_cols=109 Identities=22% Similarity=0.235 Sum_probs=77.9
Q ss_pred HHHHHHHHhhcCcc-CCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC----C--CeEEEEecCC
Q 006834 206 DAYIDNINELIPLT-GGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG----V--PAMIGVISSK 278 (629)
Q Consensus 206 ~~~i~~I~~lL~~~-~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg----~--~~~~~v~d~~ 278 (629)
....+.+.+.+... .....+|||+|||+|.++..|++.+.. ++++|+|+.+++.|+++. . .+.+.+.|
T Consensus 46 ~~~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~~---v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d-- 120 (230)
T PRK07580 46 QRMRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGAK---VVASDISPQMVEEARERAPEAGLAGNITFEVGD-- 120 (230)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCCE---EEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC--
Confidence 33444555555431 112348999999999999999988753 677799999999998752 2 46677666
Q ss_pred CCCCCCCCeeEEEecCcccccccC-HHHHHHHHHhcccCCcEE
Q 006834 279 RLPYPARAFDMAHCSGCLIPWYMY-DGLYLLEVDRVLRPGGYW 320 (629)
Q Consensus 279 ~Lp~pd~sFDlV~~s~~L~h~~~d-~~~~L~el~RvLKPGG~l 320 (629)
++..+++||+|++..+++|+... ...++.++.+.+++++.+
T Consensus 121 -~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i 162 (230)
T PRK07580 121 -LESLLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIF 162 (230)
T ss_pred -chhccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEE
Confidence 44456889999999999887633 356888888877544433
No 95
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.94 E-value=3.2e-09 Score=111.12 Aligned_cols=112 Identities=24% Similarity=0.320 Sum_probs=79.7
Q ss_pred CchHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCCeEEEEecCC
Q 006834 203 NGADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GVPAMIGVISSK 278 (629)
Q Consensus 203 ~ga~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~~~~~v~d~~ 278 (629)
..+..-++.+.+++. ++++|||+|||+|.++...++.|.. .+.++|+++-+++.|+++ +++.........
T Consensus 147 pTT~lcL~~Le~~~~----~g~~vlDvGcGSGILaIAa~kLGA~--~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~ 220 (300)
T COG2264 147 PTTSLCLEALEKLLK----KGKTVLDVGCGSGILAIAAAKLGAK--KVVGVDIDPQAVEAARENARLNGVELLVQAKGFL 220 (300)
T ss_pred hhHHHHHHHHHHhhc----CCCEEEEecCChhHHHHHHHHcCCc--eEEEecCCHHHHHHHHHHHHHcCCchhhhccccc
Confidence 334444666666654 3569999999999999999999876 456779999999999875 333211111112
Q ss_pred CCCCCC-CCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 279 RLPYPA-RAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 279 ~Lp~pd-~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
.+..+. +.||+|+++- |-+. ...+..++.+.|||||++++++
T Consensus 221 ~~~~~~~~~~DvIVANI-LA~v---l~~La~~~~~~lkpgg~lIlSG 263 (300)
T COG2264 221 LLEVPENGPFDVIVANI-LAEV---LVELAPDIKRLLKPGGRLILSG 263 (300)
T ss_pred chhhcccCcccEEEehh-hHHH---HHHHHHHHHHHcCCCceEEEEe
Confidence 222333 5999999976 3222 2578999999999999999996
No 96
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.94 E-value=1.2e-08 Score=103.28 Aligned_cols=100 Identities=17% Similarity=0.076 Sum_probs=83.9
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc-----------------CCCeEEEEecCCCCCCC--
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER-----------------GVPAMIGVISSKRLPYP-- 283 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er-----------------g~~~~~~v~d~~~Lp~p-- 283 (629)
+.+||+.|||.|.-+.+|+++|..++ |+|+|+.+++.+.++ +..+.+.++|...++..
T Consensus 44 ~~rvLvPgCGkg~D~~~LA~~G~~V~---GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~ 120 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFFLSKGVKVI---GIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN 120 (226)
T ss_pred CCeEEEeCCCChHHHHHHHhCCCcEE---EEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence 34899999999999999999998655 459999999997552 34678899999888642
Q ss_pred -CCCeeEEEecCcccccccC-HHHHHHHHHhcccCCcEEEEEeC
Q 006834 284 -ARAFDMAHCSGCLIPWYMY-DGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 284 -d~sFDlV~~s~~L~h~~~d-~~~~L~el~RvLKPGG~liis~P 325 (629)
.+.||+|+-..+|++++++ ...+.+.+.++|+|||.+++..-
T Consensus 121 ~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~ 164 (226)
T PRK13256 121 NLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVM 164 (226)
T ss_pred ccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 2689999998889888866 46799999999999999988764
No 97
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.94 E-value=7e-09 Score=102.87 Aligned_cols=116 Identities=19% Similarity=0.288 Sum_probs=89.5
Q ss_pred hHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecC-CCCCCC
Q 006834 205 ADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISS-KRLPYP 283 (629)
Q Consensus 205 a~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~-~~Lp~p 283 (629)
.....+.-.+++....+...-|||||||+|..+..|.+.|. -++|+|+|+.|++.|.++-....+..+|. +-+||.
T Consensus 33 Q~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh---~wiGvDiSpsML~~a~~~e~egdlil~DMG~Glpfr 109 (270)
T KOG1541|consen 33 QAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGH---QWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFR 109 (270)
T ss_pred hHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCc---eEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCC
Confidence 34455666677766655667899999999999999999885 35677999999999998755555555553 778999
Q ss_pred CCCeeEEEecCccccccc-------CHH----HHHHHHHhcccCCcEEEEEe
Q 006834 284 ARAFDMAHCSGCLIPWYM-------YDG----LYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 284 d~sFDlV~~s~~L~h~~~-------d~~----~~L~el~RvLKPGG~liis~ 324 (629)
.++||.|++...+ .|.= +|. .++..++.+|++|+..++..
T Consensus 110 pGtFDg~ISISAv-QWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Qf 160 (270)
T KOG1541|consen 110 PGTFDGVISISAV-QWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQF 160 (270)
T ss_pred CCccceEEEeeee-eeecccCccccChHHHHHHHhhhhhhhhccCceeEEEe
Confidence 9999999986665 3321 122 47888999999999999984
No 98
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.92 E-value=7.6e-09 Score=87.64 Aligned_cols=97 Identities=21% Similarity=0.276 Sum_probs=76.6
Q ss_pred eEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc-----CCCeEEEEecCCCCCC-CCCCeeEEEecCcccc
Q 006834 225 TAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER-----GVPAMIGVISSKRLPY-PARAFDMAHCSGCLIP 298 (629)
Q Consensus 225 ~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er-----g~~~~~~v~d~~~Lp~-pd~sFDlV~~s~~L~h 298 (629)
++||+|||.|.++..+++.. ...++++|.++.+++.+++. .....+...+...... ..++||+|++..++++
T Consensus 1 ~ildig~G~G~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASGP--GARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcCC--CCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence 48999999999999998832 33667889999999988722 2346677777665543 5678999999999866
Q ss_pred cccCHHHHHHHHHhcccCCcEEEEE
Q 006834 299 WYMYDGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 299 ~~~d~~~~L~el~RvLKPGG~liis 323 (629)
+......++..+.+.|+|||.+++.
T Consensus 79 ~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 79 LVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 4446788999999999999999886
No 99
>PRK14968 putative methyltransferase; Provisional
Probab=98.92 E-value=3e-08 Score=96.12 Aligned_cols=99 Identities=19% Similarity=0.185 Sum_probs=74.2
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCC---eEEEEecCCCCCCCCCCeeEEEecCc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GVP---AMIGVISSKRLPYPARAFDMAHCSGC 295 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~---~~~~v~d~~~Lp~pd~sFDlV~~s~~ 295 (629)
+.+|||+|||+|.++..+++++. .++++|+++.+++.++++ +.. +.+...|... ++.+++||+|+++..
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p 99 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKNGK---KVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPP 99 (188)
T ss_pred CCEEEEEccccCHHHHHHHhhcc---eEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECCC
Confidence 34899999999999999998854 556779999999998754 222 6677766544 345568999998765
Q ss_pred cccccc--------------------CHHHHHHHHHhcccCCcEEEEEeC
Q 006834 296 LIPWYM--------------------YDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 296 L~h~~~--------------------d~~~~L~el~RvLKPGG~liis~P 325 (629)
+.+..+ ....+++++.++|||||.+++..+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 533110 124579999999999999998764
No 100
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.87 E-value=2e-08 Score=102.65 Aligned_cols=121 Identities=17% Similarity=0.205 Sum_probs=89.4
Q ss_pred CCCCchHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC------CCeEEE
Q 006834 200 TFPNGADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG------VPAMIG 273 (629)
Q Consensus 200 ~f~~ga~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg------~~~~~~ 273 (629)
.|+-+.+.. .+..+..... ..+|||+|||+|..+..++++-.. ..++++|+.+++.++|++.- ..+.+.
T Consensus 26 ~~~~~~Dai--LL~~~~~~~~--~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~ 100 (248)
T COG4123 26 GFRYGTDAI--LLAAFAPVPK--KGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLEERIQVI 100 (248)
T ss_pred ccccccHHH--HHHhhccccc--CCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcchhceeEe
Confidence 344455544 4556655443 458999999999999999998443 47888899999999998751 357788
Q ss_pred EecCCCCC--CCCCCeeEEEecCcccccccC-----------------HHHHHHHHHhcccCCcEEEEEeC
Q 006834 274 VISSKRLP--YPARAFDMAHCSGCLIPWYMY-----------------DGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 274 v~d~~~Lp--~pd~sFDlV~~s~~L~h~~~d-----------------~~~~L~el~RvLKPGG~liis~P 325 (629)
+.|...+. ....+||+|+|+.-+..-... .+.+++...++|||||++.++.|
T Consensus 101 ~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r 171 (248)
T COG4123 101 EADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHR 171 (248)
T ss_pred hhhHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEec
Confidence 88877664 334579999997766433222 23678889999999999999965
No 101
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.87 E-value=2.3e-08 Score=99.07 Aligned_cols=105 Identities=15% Similarity=0.117 Sum_probs=76.4
Q ss_pred hhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C--CCeEEEEecCCCC-CCCCCC
Q 006834 214 ELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G--VPAMIGVISSKRL-PYPARA 286 (629)
Q Consensus 214 ~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g--~~~~~~v~d~~~L-p~pd~s 286 (629)
..+...++. +|||+|||+|.++..++........++++|+++.+++.|+++ + .++.+...|.... +..++.
T Consensus 34 ~~l~~~~~~--~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~ 111 (198)
T PRK00377 34 SKLRLRKGD--MILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEK 111 (198)
T ss_pred HHcCCCCcC--EEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCC
Confidence 344444444 899999999999998876521222567779999999988764 3 2467777776543 333468
Q ss_pred eeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 287 FDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 287 FDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
||.|++.... .+...++.++.++|||||++++..
T Consensus 112 ~D~V~~~~~~----~~~~~~l~~~~~~LkpgG~lv~~~ 145 (198)
T PRK00377 112 FDRIFIGGGS----EKLKEIISASWEIIKKGGRIVIDA 145 (198)
T ss_pred CCEEEECCCc----ccHHHHHHHHHHHcCCCcEEEEEe
Confidence 9999985422 256789999999999999999864
No 102
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.87 E-value=5.3e-09 Score=100.46 Aligned_cols=72 Identities=21% Similarity=0.083 Sum_probs=64.0
Q ss_pred eecCcHHHHHHHHHcC--------CCeEEEEecCCCCCCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEE
Q 006834 252 RRDTHEAQVQFALERG--------VPAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 252 gvDiS~~~i~~A~erg--------~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis 323 (629)
|+|+|++|++.|+++. .++.+.++|...+|+++++||+|++..+++++. ++..+|++++|+|||||.|++.
T Consensus 2 GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~-d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 2 GLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVV-DRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred eEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCC-CHHHHHHHHHHHcCcCeEEEEE
Confidence 5699999999997542 257899999999999999999999999997765 8999999999999999999987
Q ss_pred e
Q 006834 324 G 324 (629)
Q Consensus 324 ~ 324 (629)
.
T Consensus 81 d 81 (160)
T PLN02232 81 D 81 (160)
T ss_pred E
Confidence 4
No 103
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.87 E-value=2.3e-08 Score=106.86 Aligned_cols=115 Identities=17% Similarity=0.129 Sum_probs=85.8
Q ss_pred HHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCCCC
Q 006834 207 AYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKRLP 281 (629)
Q Consensus 207 ~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~Lp 281 (629)
.+...+.++....++. +|||+|||+|.++..++..+. .++++|+++.|++.|+++ +. ++.+...|..++|
T Consensus 169 ~la~~~~~l~~~~~g~--~vLDp~cGtG~~lieaa~~~~---~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~ 243 (329)
T TIGR01177 169 KLARAMVNLARVTEGD--RVLDPFCGTGGFLIEAGLMGA---KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLP 243 (329)
T ss_pred HHHHHHHHHhCCCCcC--EEEECCCCCCHHHHHHHHhCC---eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCC
Confidence 3444555555444444 899999999999988877665 456779999999988764 32 3577888999999
Q ss_pred CCCCCeeEEEecCcccc---cc-----cCHHHHHHHHHhcccCCcEEEEEeCC
Q 006834 282 YPARAFDMAHCSGCLIP---WY-----MYDGLYLLEVDRVLRPGGYWILSGPP 326 (629)
Q Consensus 282 ~pd~sFDlV~~s~~L~h---~~-----~d~~~~L~el~RvLKPGG~liis~P~ 326 (629)
+++++||+|+++..+.. .. .....++.++.++|||||++++..|.
T Consensus 244 ~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~ 296 (329)
T TIGR01177 244 LSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPT 296 (329)
T ss_pred cccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcC
Confidence 88889999999643311 00 01357999999999999999998764
No 104
>PTZ00146 fibrillarin; Provisional
Probab=98.87 E-value=2.5e-08 Score=104.33 Aligned_cols=96 Identities=10% Similarity=0.004 Sum_probs=69.4
Q ss_pred CeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHH----HHHHHHHcCCCeEEEEecCCC---CCCCCCCeeEEEecCcc
Q 006834 224 RTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEA----QVQFALERGVPAMIGVISSKR---LPYPARAFDMAHCSGCL 296 (629)
Q Consensus 224 ~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~----~i~~A~erg~~~~~~v~d~~~---Lp~pd~sFDlV~~s~~L 296 (629)
.+|||+|||+|.++..+++..-..-.++++|+++. +++.|+++ .++.+.+.|... +..+..+||+|++....
T Consensus 134 ~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r-~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva~ 212 (293)
T PTZ00146 134 SKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR-PNIVPIIEDARYPQKYRMLVPMVDVIFADVAQ 212 (293)
T ss_pred CEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-CCCEEEECCccChhhhhcccCCCCEEEEeCCC
Confidence 49999999999999999987421124677799986 45555544 456777777643 22234589999987632
Q ss_pred cccccCHHHHHHHHHhcccCCcEEEEE
Q 006834 297 IPWYMYDGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 297 ~h~~~d~~~~L~el~RvLKPGG~liis 323 (629)
+.+...++.++.++|||||+|++.
T Consensus 213 ---pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 213 ---PDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred ---cchHHHHHHHHHHhccCCCEEEEE
Confidence 223456778999999999999996
No 105
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.85 E-value=6.3e-09 Score=108.17 Aligned_cols=104 Identities=22% Similarity=0.249 Sum_probs=81.9
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC-----------CCeEEEEecCC------CCCCCCC
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG-----------VPAMIGVISSK------RLPYPAR 285 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg-----------~~~~~~v~d~~------~Lp~pd~ 285 (629)
+..+||+|||-|.-+...-+.++. .++++|+++..|+.|++|. .++.|..+|.. .+++++.
T Consensus 118 ~~~~~~LgCGKGGDLlKw~kAgI~--~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp 195 (389)
T KOG1975|consen 118 GDDVLDLGCGKGGDLLKWDKAGIG--EYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP 195 (389)
T ss_pred ccccceeccCCcccHhHhhhhccc--ceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence 347999999999888877777765 5688899999999999763 24677777753 3455666
Q ss_pred CeeEEEecCcccccccC---HHHHHHHHHhcccCCcEEEEEeCCCC
Q 006834 286 AFDMAHCSGCLIPWYMY---DGLYLLEVDRVLRPGGYWILSGPPIH 328 (629)
Q Consensus 286 sFDlV~~s~~L~h~~~d---~~~~L~el~RvLKPGG~liis~P~~~ 328 (629)
+||+|-|.+++|.-... ...+|..+.+.|||||+||-+.|+.+
T Consensus 196 ~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd 241 (389)
T KOG1975|consen 196 RFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSD 241 (389)
T ss_pred CcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHH
Confidence 79999999999554433 24589999999999999999988654
No 106
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.85 E-value=3.4e-08 Score=98.71 Aligned_cols=108 Identities=15% Similarity=0.079 Sum_probs=78.9
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKRL 280 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~L 280 (629)
......+.+.+...++. +|||+|||+|.++..|++... .++++|.++++++.|+++ +. ++.+...|....
T Consensus 64 p~~~~~l~~~l~~~~~~--~VLeiG~GsG~~t~~la~~~~---~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~ 138 (212)
T PRK00312 64 PYMVARMTELLELKPGD--RVLEIGTGSGYQAAVLAHLVR---RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKG 138 (212)
T ss_pred HHHHHHHHHhcCCCCCC--EEEEECCCccHHHHHHHHHhC---EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccC
Confidence 34455666666655444 899999999999998887753 456779999999999865 22 477777775443
Q ss_pred CCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 281 PYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 281 p~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
..+.++||+|++...+.++ ..++.+.|+|||.+++...
T Consensus 139 ~~~~~~fD~I~~~~~~~~~-------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 139 WPAYAPFDRILVTAAAPEI-------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CCcCCCcCEEEEccCchhh-------hHHHHHhcCCCcEEEEEEc
Confidence 2234789999997765433 3567899999999999753
No 107
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.85 E-value=8.9e-08 Score=98.99 Aligned_cols=116 Identities=18% Similarity=0.185 Sum_probs=81.7
Q ss_pred hHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC-----CCeEEEEecCCC
Q 006834 205 ADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG-----VPAMIGVISSKR 279 (629)
Q Consensus 205 a~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg-----~~~~~~v~d~~~ 279 (629)
.+.+++.+.+.+...+ ..+|||+|||+|.++..++..... ..++++|+++.+++.|+++. .++.+...|...
T Consensus 93 te~l~~~~~~~~~~~~--~~~vLDiG~GsG~~~~~la~~~~~-~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~ 169 (275)
T PRK09328 93 TEELVEWALEALLLKE--PLRVLDLGTGSGAIALALAKERPD-AEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE 169 (275)
T ss_pred cHHHHHHHHHhccccC--CCEEEEEcCcHHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC
Confidence 3555665554443333 348999999999999999987632 35778899999999998752 357777777643
Q ss_pred CCCCCCCeeEEEecCcccccc------c-------------------CHHHHHHHHHhcccCCcEEEEEe
Q 006834 280 LPYPARAFDMAHCSGCLIPWY------M-------------------YDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 280 Lp~pd~sFDlV~~s~~L~h~~------~-------------------d~~~~L~el~RvLKPGG~liis~ 324 (629)
++++++||+|+++..+.... . ....++.++.++|+|||++++..
T Consensus 170 -~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 170 -PLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred -cCCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 23457999999965432110 0 01357888889999999999964
No 108
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.84 E-value=8.2e-08 Score=104.92 Aligned_cols=115 Identities=13% Similarity=0.065 Sum_probs=80.2
Q ss_pred hHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCCeEEEEecCCCC
Q 006834 205 ADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GVPAMIGVISSKRL 280 (629)
Q Consensus 205 a~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~~~~~v~d~~~L 280 (629)
.+.+++.+.+.+. . ..+|||+|||+|.++..++..... ..++++|+|+.+++.|+++ +.++.+..+|....
T Consensus 238 TE~LVe~aL~~l~--~--~~rVLDLGcGSG~IaiaLA~~~p~-a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~ 312 (423)
T PRK14966 238 TEHLVEAVLARLP--E--NGRVWDLGTGSGAVAVTVALERPD-AFVRASDISPPALETARKNAADLGARVEFAHGSWFDT 312 (423)
T ss_pred HHHHHHHhhhccC--C--CCEEEEEeChhhHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhcc
Confidence 3455555555443 2 238999999999999998875432 2567789999999999865 45678888887544
Q ss_pred CCC-CCCeeEEEecCccccccc--------------------C----HHHHHHHHHhcccCCcEEEEEe
Q 006834 281 PYP-ARAFDMAHCSGCLIPWYM--------------------Y----DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 281 p~p-d~sFDlV~~s~~L~h~~~--------------------d----~~~~L~el~RvLKPGG~liis~ 324 (629)
.++ .++||+|+|+.....-.. + ...++.++.+.|+|||.+++..
T Consensus 313 ~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi 381 (423)
T PRK14966 313 DMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH 381 (423)
T ss_pred ccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 332 458999999775432110 0 1246677788999999998874
No 109
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.84 E-value=3.4e-08 Score=97.49 Aligned_cols=152 Identities=16% Similarity=0.245 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHhhcccCCCCeeEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHH----hhcc--cceecc
Q 006834 459 ELWKDRMTYYKKIDGLFHKGRYRNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIY----ERGL--IGTYQD 531 (629)
Q Consensus 459 ~~w~~~v~~y~~~~~~~~~~~~R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~----ergl--i~~~~~ 531 (629)
..|++++-.-..+...+..+ ..|||+|||+|.++..|+.. +- ..|+.+|.++.++..+. +.|+ +-+++.
T Consensus 27 ~~~~~~~~d~l~l~~~l~~g--~~VLDiGcGtG~~al~la~~~~~--~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~ 102 (187)
T PRK00107 27 ELWERHILDSLAIAPYLPGG--ERVLDVGSGAGFPGIPLAIARPE--LKVTLVDSLGKKIAFLREVAAELGLKNVTVVHG 102 (187)
T ss_pred HHHHHHHHHHHHHHhhcCCC--CeEEEEcCCCCHHHHHHHHHCCC--CeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEec
Confidence 48888885544444445544 35999999999988887642 21 35566666656665443 4455 444553
Q ss_pred ccccCCCCCcccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCCeEE--EeecCCC
Q 006834 532 WCEAFSTYPRTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTVEMLVKIRSITEGMRWKSQ--IMDHESG 609 (629)
Q Consensus 532 ~~e~f~~yp~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~l~w~~~--~~~~e~~ 609 (629)
-.+.+.. ..+||+|-+.. ..+++.++.++.|+|||||.+++-+.......+..++..+-|.+. +.-+-.|
T Consensus 103 d~~~~~~-~~~fDlV~~~~-------~~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 174 (187)
T PRK00107 103 RAEEFGQ-EEKFDVVTSRA-------VASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEVIELTLPG 174 (187)
T ss_pred cHhhCCC-CCCccEEEEcc-------ccCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeeeEEEecCC
Confidence 3444444 57999998853 246789999999999999999999888888899999998889854 2222234
Q ss_pred CCCCceEEEEEec
Q 006834 610 PFNPEKILFAAKT 622 (629)
Q Consensus 610 ~~~~e~~l~~~K~ 622 (629)
-.++-.+.|.+|+
T Consensus 175 ~~~~~~~~~~~~~ 187 (187)
T PRK00107 175 LDGERHLVIIRKK 187 (187)
T ss_pred CCCcEEEEEEecC
Confidence 4345566777774
No 110
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.84 E-value=2.5e-08 Score=97.87 Aligned_cols=95 Identities=14% Similarity=0.071 Sum_probs=68.5
Q ss_pred CeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCC--------CCCCCeeEEEecCc
Q 006834 224 RTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLP--------YPARAFDMAHCSGC 295 (629)
Q Consensus 224 ~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp--------~pd~sFDlV~~s~~ 295 (629)
.+|||+|||+|.++..++++......++++|+++.+ ...++.+...|....+ +++++||+|++..+
T Consensus 34 ~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~ 107 (188)
T TIGR00438 34 DTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAA 107 (188)
T ss_pred CEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCC
Confidence 489999999999999998875333356788999865 2234667777765532 45678999998643
Q ss_pred cc---ccccC-------HHHHHHHHHhcccCCcEEEEEe
Q 006834 296 LI---PWYMY-------DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 296 L~---h~~~d-------~~~~L~el~RvLKPGG~liis~ 324 (629)
.+ +|..+ ...++.++.++|+|||++++..
T Consensus 108 ~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 108 PNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred CCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 21 11111 2568999999999999999974
No 111
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.80 E-value=1.5e-07 Score=98.54 Aligned_cols=118 Identities=12% Similarity=0.046 Sum_probs=80.7
Q ss_pred hHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC--CeEEEEecCC
Q 006834 205 ADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV--PAMIGVISSK 278 (629)
Q Consensus 205 a~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~~ 278 (629)
.+.+++.+.+.+..... ..+|||+|||+|.++..++..... ..++++|+|+.+++.|+++ +. ++.+..+|..
T Consensus 98 te~lv~~~l~~~~~~~~-~~~vLDlG~GsG~i~l~la~~~~~-~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~ 175 (284)
T TIGR00536 98 TEELVEKALASLISQNP-ILHILDLGTGSGCIALALAYEFPN-AEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLF 175 (284)
T ss_pred cHHHHHHHHHHhhhcCC-CCEEEEEeccHhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchh
Confidence 35555555443321111 148999999999999999987542 3567889999999999874 33 3778877765
Q ss_pred CCCCCCCCeeEEEecCcccc-------------ccc-----------CHHHHHHHHHhcccCCcEEEEEeC
Q 006834 279 RLPYPARAFDMAHCSGCLIP-------------WYM-----------YDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 279 ~Lp~pd~sFDlV~~s~~L~h-------------~~~-----------d~~~~L~el~RvLKPGG~liis~P 325 (629)
. ++++++||+|+++.-... -+. ....++.++.++|+|||++++...
T Consensus 176 ~-~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 176 E-PLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG 245 (284)
T ss_pred c-cCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 4 344558999999642211 110 123578899999999999999753
No 112
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.80 E-value=7.9e-08 Score=95.01 Aligned_cols=113 Identities=17% Similarity=0.016 Sum_probs=78.4
Q ss_pred hHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C-CCeEEEEecCCC
Q 006834 205 ADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G-VPAMIGVISSKR 279 (629)
Q Consensus 205 a~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g-~~~~~~v~d~~~ 279 (629)
.......+.+.+....+. +|||+|||+|.++..++..... ..++++|+++.+++.|+++ + .++.+...|...
T Consensus 25 ~~~v~~~l~~~l~~~~~~--~VLDiG~G~G~~~~~la~~~~~-~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~ 101 (196)
T PRK07402 25 KREVRLLLISQLRLEPDS--VLWDIGAGTGTIPVEAGLLCPK-GRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPE 101 (196)
T ss_pred HHHHHHHHHHhcCCCCCC--EEEEeCCCCCHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHH
Confidence 344444566666554444 8999999999999999865422 3567789999999999864 3 246777766543
Q ss_pred -CCCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 280 -LPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 280 -Lp~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
++.....+|.++... ..+...++.++.++|+|||++++..+
T Consensus 102 ~~~~~~~~~d~v~~~~-----~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 102 CLAQLAPAPDRVCIEG-----GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred HHhhCCCCCCEEEEEC-----CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 222223467665422 22456899999999999999999854
No 113
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.78 E-value=1.4e-07 Score=98.96 Aligned_cols=100 Identities=12% Similarity=0.024 Sum_probs=73.7
Q ss_pred CeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC--CeEEEEecCCCCCCCCCCeeEEEecCccc
Q 006834 224 RTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV--PAMIGVISSKRLPYPARAFDMAHCSGCLI 297 (629)
Q Consensus 224 ~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~ 297 (629)
.+|||+|||+|.++..+++.... ..++++|+|+.+++.|+++ +. ++.+...|... ++++++||+|+++.-..
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~~-~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFPE-AEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCCC
Confidence 48999999999999999987532 2567789999999999865 33 47788777643 23556899999974321
Q ss_pred c------c----ccC--------------HHHHHHHHHhcccCCcEEEEEeC
Q 006834 298 P------W----YMY--------------DGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 298 h------~----~~d--------------~~~~L~el~RvLKPGG~liis~P 325 (629)
. . ..+ ...++.++.++|+|||.+++...
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 1 0 001 13578899999999999999753
No 114
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.75 E-value=3.3e-08 Score=99.51 Aligned_cols=122 Identities=17% Similarity=0.220 Sum_probs=90.1
Q ss_pred CchHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCc-EeEEEeecCcHHHHHHHHHcCC------CeEEEEe
Q 006834 203 NGADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDIL-TMSFARRDTHEAQVQFALERGV------PAMIGVI 275 (629)
Q Consensus 203 ~ga~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~-~v~i~gvDiS~~~i~~A~erg~------~~~~~v~ 275 (629)
..+.-+...+.++++.......+||+||||.|.....|++-... ...+.+.|.|+.+++..+++.. .+.+..+
T Consensus 52 kdR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dl 131 (264)
T KOG2361|consen 52 KDRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDL 131 (264)
T ss_pred chhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceec
Confidence 34455566777777665444448999999999999888886532 3567788999999999987631 1222222
Q ss_pred cCC--CCCCCCCCeeEEEecCcccccccC-HHHHHHHHHhcccCCcEEEEEe
Q 006834 276 SSK--RLPYPARAFDMAHCSGCLIPWYMY-DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 276 d~~--~Lp~pd~sFDlV~~s~~L~h~~~d-~~~~L~el~RvLKPGG~liis~ 324 (629)
+.. .-+...+++|+|++.++|..++++ ...++.++.++|||||.+++..
T Consensus 132 t~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrD 183 (264)
T KOG2361|consen 132 TSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRD 183 (264)
T ss_pred cchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEee
Confidence 222 235668999999999999888766 4579999999999999999974
No 115
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.74 E-value=4.4e-08 Score=98.38 Aligned_cols=111 Identities=15% Similarity=0.108 Sum_probs=79.2
Q ss_pred hHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCC
Q 006834 205 ADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKR 279 (629)
Q Consensus 205 a~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~ 279 (629)
+......+.+.+...++. +|||||||+|.+++.|+...-....++++|..+..++.|+++ +. ++.+.++|...
T Consensus 57 ~P~~~a~~l~~L~l~pg~--~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~ 134 (209)
T PF01135_consen 57 APSMVARMLEALDLKPGD--RVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSE 134 (209)
T ss_dssp -HHHHHHHHHHTTC-TT---EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGG
T ss_pred HHHHHHHHHHHHhcCCCC--EEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhh
Confidence 455677788888877776 999999999999999998632222456679999999999875 33 68888888654
Q ss_pred CCCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 280 LPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 280 Lp~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
-.-....||.|++.......+ ..+.+.|++||++++-.
T Consensus 135 g~~~~apfD~I~v~~a~~~ip-------~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 135 GWPEEAPFDRIIVTAAVPEIP-------EALLEQLKPGGRLVAPI 172 (209)
T ss_dssp TTGGG-SEEEEEESSBBSS---------HHHHHTEEEEEEEEEEE
T ss_pred ccccCCCcCEEEEeeccchHH-------HHHHHhcCCCcEEEEEE
Confidence 332456899999988774433 45677799999999964
No 116
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.74 E-value=1.1e-08 Score=101.75 Aligned_cols=99 Identities=19% Similarity=0.221 Sum_probs=87.1
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc---CCCeEEEEecCCCCCCCCCCeeEEEecCccccc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER---GVPAMIGVISSKRLPYPARAFDMAHCSGCLIPW 299 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er---g~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~ 299 (629)
...++|||||.|.....|...++. .++-+|.|..|++.++.. ++.....+.|.+.|+|.+++||+|+++..+ ||
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~ve--kli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlsl-HW 149 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVE--KLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSL-HW 149 (325)
T ss_pred CcceeecccchhhhhHHHHhcchh--heeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhh-hh
Confidence 447999999999999999999865 456789999999999865 344667788999999999999999999999 99
Q ss_pred ccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 300 YMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 300 ~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
..+....+.++...|||+|.|+-+.
T Consensus 150 ~NdLPg~m~~ck~~lKPDg~Fiasm 174 (325)
T KOG2940|consen 150 TNDLPGSMIQCKLALKPDGLFIASM 174 (325)
T ss_pred hccCchHHHHHHHhcCCCccchhHH
Confidence 9888889999999999999998874
No 117
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=1.1e-07 Score=94.69 Aligned_cols=108 Identities=16% Similarity=0.143 Sum_probs=83.7
Q ss_pred hHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCC
Q 006834 205 ADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKR 279 (629)
Q Consensus 205 a~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~ 279 (629)
.......+.+.+...++. +|||||||+|+.++.|++..-.++++ |..++..+.|+++ +. ++.+.++|...
T Consensus 57 ~P~~vA~m~~~L~~~~g~--~VLEIGtGsGY~aAvla~l~~~V~si---Er~~~L~~~A~~~L~~lg~~nV~v~~gDG~~ 131 (209)
T COG2518 57 APHMVARMLQLLELKPGD--RVLEIGTGSGYQAAVLARLVGRVVSI---ERIEELAEQARRNLETLGYENVTVRHGDGSK 131 (209)
T ss_pred CcHHHHHHHHHhCCCCCC--eEEEECCCchHHHHHHHHHhCeEEEE---EEcHHHHHHHHHHHHHcCCCceEEEECCccc
Confidence 345566777888877776 99999999999999999986655555 9999999999875 33 68888888654
Q ss_pred CCCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 280 LPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 280 Lp~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
---+...||.|+........+ ..+.+.|||||.+++-.
T Consensus 132 G~~~~aPyD~I~Vtaaa~~vP-------~~Ll~QL~~gGrlv~Pv 169 (209)
T COG2518 132 GWPEEAPYDRIIVTAAAPEVP-------EALLDQLKPGGRLVIPV 169 (209)
T ss_pred CCCCCCCcCEEEEeeccCCCC-------HHHHHhcccCCEEEEEE
Confidence 332457899999988775555 45667899999999964
No 118
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.70 E-value=3e-07 Score=97.61 Aligned_cols=99 Identities=12% Similarity=-0.004 Sum_probs=73.4
Q ss_pred CeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC--CeEEEEecCCCCCCCCCCeeEEEecCccc
Q 006834 224 RTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV--PAMIGVISSKRLPYPARAFDMAHCSGCLI 297 (629)
Q Consensus 224 ~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~ 297 (629)
.+|||+|||+|.++..++..... ..++++|+|+.+++.|+++ +. ++.+..+|... ++++++||+|+|+....
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~-~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi 212 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPD-AEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYV 212 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCC
Confidence 48999999999999999987532 3567889999999999865 32 47788877643 23456899999974321
Q ss_pred c-------------ccc-------C----HHHHHHHHHhcccCCcEEEEEe
Q 006834 298 P-------------WYM-------Y----DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 298 h-------------~~~-------d----~~~~L~el~RvLKPGG~liis~ 324 (629)
. .+. + ...++.++.++|+|||.+++..
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~ 263 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEV 263 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 1 110 0 1357899999999999999974
No 119
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.70 E-value=5.5e-07 Score=92.87 Aligned_cols=119 Identities=17% Similarity=0.101 Sum_probs=80.2
Q ss_pred chHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC--CCeEEEEecCCCC-
Q 006834 204 GADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG--VPAMIGVISSKRL- 280 (629)
Q Consensus 204 ga~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg--~~~~~~v~d~~~L- 280 (629)
.+..+++.+.+.+.... ...+|||+|||+|.++..+++.... ..++++|+|+.+++.|+++- ....+...|....
T Consensus 69 ~Te~Lv~~~l~~~~~~~-~~~~vLDlg~GsG~i~l~la~~~~~-~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l 146 (251)
T TIGR03704 69 RTEFLVDEAAALARPRS-GTLVVVDLCCGSGAVGAALAAALDG-IELHAADIDPAAVRCARRNLADAGGTVHEGDLYDAL 146 (251)
T ss_pred cHHHHHHHHHHhhcccC-CCCEEEEecCchHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhc
Confidence 34556666665543221 2347999999999999999876431 25677899999999998652 1246777776442
Q ss_pred CC-CCCCeeEEEecCcccccc------c---------------C----HHHHHHHHHhcccCCcEEEEEe
Q 006834 281 PY-PARAFDMAHCSGCLIPWY------M---------------Y----DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 281 p~-pd~sFDlV~~s~~L~h~~------~---------------d----~~~~L~el~RvLKPGG~liis~ 324 (629)
+. ..++||+|+++.-..... + + ...++..+.++|+|||.+++..
T Consensus 147 ~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~ 216 (251)
T TIGR03704 147 PTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVET 216 (251)
T ss_pred chhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 21 135799999976543211 0 0 1257777889999999999985
No 120
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.70 E-value=7.8e-09 Score=101.44 Aligned_cols=183 Identities=16% Similarity=0.196 Sum_probs=110.5
Q ss_pred ecCCCCCCCCchHHHHHHHHhhcCcc----CCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCC
Q 006834 194 FPGGGTTFPNGADAYIDNINELIPLT----GGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVP 269 (629)
Q Consensus 194 Fpgggt~f~~ga~~~i~~I~~lL~~~----~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~ 269 (629)
|-|.|+||.-..+ ++.+++... ...+.++||+|+|.|..+..++...-. +.+.+.|..|+...++++-+
T Consensus 84 ~lgrGsMFifSe~----QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~fee---vyATElS~tMr~rL~kk~yn 156 (288)
T KOG3987|consen 84 FLGRGSMFIFSEE----QFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFEE---VYATELSWTMRDRLKKKNYN 156 (288)
T ss_pred ccccCceEEecHH----HHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHHH---HHHHHhhHHHHHHHhhcCCc
Confidence 3455566633333 344444332 233568999999999999998876443 45669999999999887744
Q ss_pred eEEEEecCCCCCCCCCCeeEEEecCcccccccCHHHHHHHHHhcccC-CcEEEEE--eCCCCccccc--cCccCcchhhh
Q 006834 270 AMIGVISSKRLPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRP-GGYWILS--GPPIHWKKYW--RGWERTKEDLK 344 (629)
Q Consensus 270 ~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKP-GG~liis--~P~~~w~~~~--~~w~~~~e~l~ 344 (629)
+. ......-.+-+||+|.|.+.| .-..++..+|..+..+|+| +|..+++ -|-..+.... +.|.++.+-+.
T Consensus 157 Vl----~~~ew~~t~~k~dli~clNlL-DRc~~p~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~rPdn~Le 231 (288)
T KOG3987|consen 157 VL----TEIEWLQTDVKLDLILCLNLL-DRCFDPFKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPLRPDNLLE 231 (288)
T ss_pred ee----eehhhhhcCceeehHHHHHHH-HhhcChHHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcCCchHHHH
Confidence 32 222222234579999998877 3444789999999999999 8887774 3555555422 23555544444
Q ss_pred hHHHHHHHHHHHhcceeecccCceEEEeccCCccccccccccCCCCCCCCCCCCCCccc
Q 006834 345 QEQDTIEDIAKRLCWKKLIEKNDLAIWQKPINHIDCNKSKVVYKTPQICGPDNPDTAWY 403 (629)
Q Consensus 345 ~~~~~ie~l~~~l~w~~v~~~~~~aiwqKp~~~~~c~~~r~~~~~p~lC~~~~~d~~wy 403 (629)
...+..++.+.++- .+.++.... +..+++ .|++|++|.-++++|
T Consensus 232 ~~Gr~~ee~v~~~~--e~lr~~g~~--------veawTr-----lPYLCEGDm~ns~Y~ 275 (288)
T KOG3987|consen 232 NNGRSFEEEVARFM--ELLRNCGYR--------VEAWTR-----LPYLCEGDMHNSFYW 275 (288)
T ss_pred hcCccHHHHHHHHH--HHHHhcCch--------hhhhhc-----CCeecccccccceEE
Confidence 43333433333221 111111111 233443 399999887666555
No 121
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.69 E-value=3.7e-07 Score=107.05 Aligned_cols=123 Identities=18% Similarity=0.193 Sum_probs=77.6
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHh----hcc----cceec-cccccCCCCCcccceeecccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYE----RGL----IGTYQ-DWCEAFSTYPRTYDLIHASGV 551 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----rgl----i~~~~-~~~e~f~~yp~t~Dl~H~~~~ 551 (629)
+.|||++||+|+|+.+++..+.- .|+.+|.++..+..+.+ -|+ +-+++ |..+-+....+.||+|=++-=
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~Ga~--~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALGGAK--STTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 46999999999999999987642 35556666566665544 233 12222 322222223678999876421
Q ss_pred -ccccC-------CCcCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCCeEEEee
Q 006834 552 -FSIYQ-------DRCDITNILLEMDRILRPEGTVIFRDTVEMLVKIRSITEGMRWKSQIMD 605 (629)
Q Consensus 552 -fs~~~-------~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~l~w~~~~~~ 605 (629)
|+..+ ..-+...++...-|+|+|||.+++...........+.+..-.+.+++..
T Consensus 618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~~~~~~~~g~~~~~i~ 679 (702)
T PRK11783 618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMDEEGLAKLGLKAEEIT 679 (702)
T ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChhHHHHHhCCCeEEEEe
Confidence 21111 0112456888889999999999987554444444666677788887765
No 122
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.68 E-value=1.1e-07 Score=101.27 Aligned_cols=110 Identities=12% Similarity=0.007 Sum_probs=78.4
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKRL 280 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~L 280 (629)
..+...+.+.+...++. +|||+|||+|.++..+++.....-.++++|+++++++.|+++ +. ++.+..+|....
T Consensus 66 p~l~a~ll~~L~i~~g~--~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~ 143 (322)
T PRK13943 66 PSLMALFMEWVGLDKGM--RVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYG 143 (322)
T ss_pred HHHHHHHHHhcCCCCCC--EEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhc
Confidence 33445565666554444 899999999999999998643211356779999999998863 33 467777776655
Q ss_pred CCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 281 PYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 281 p~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
+....+||+|++...+.+. ...+.+.|+|||.+++..
T Consensus 144 ~~~~~~fD~Ii~~~g~~~i-------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 144 VPEFAPYDVIFVTVGVDEV-------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred ccccCCccEEEECCchHHh-------HHHHHHhcCCCCEEEEEe
Confidence 5445689999987655332 235678999999998864
No 123
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.68 E-value=2.2e-07 Score=102.88 Aligned_cols=113 Identities=16% Similarity=0.192 Sum_probs=81.3
Q ss_pred HHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCCeEEEEecCCCCC--CCC
Q 006834 211 NINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GVPAMIGVISSKRLP--YPA 284 (629)
Q Consensus 211 ~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~~~~~v~d~~~Lp--~pd 284 (629)
.+...+...++. +|||+|||+|..+..++++... ..++++|+++.+++.++++ +..+.+...|...++ ++.
T Consensus 235 ~~~~~l~~~~g~--~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~ 311 (427)
T PRK10901 235 LAATLLAPQNGE--RVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDG 311 (427)
T ss_pred HHHHHcCCCCCC--EEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhccc
Confidence 444555554444 8999999999999999987642 3567889999999998765 455677788877654 345
Q ss_pred CCeeEEEecCc------cc-----ccccC----------HHHHHHHHHhcccCCcEEEEEeCC
Q 006834 285 RAFDMAHCSGC------LI-----PWYMY----------DGLYLLEVDRVLRPGGYWILSGPP 326 (629)
Q Consensus 285 ~sFDlV~~s~~------L~-----h~~~d----------~~~~L~el~RvLKPGG~liis~P~ 326 (629)
++||.|++... +. .|... ...+|..+.++|||||++++++..
T Consensus 312 ~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs 374 (427)
T PRK10901 312 QPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS 374 (427)
T ss_pred CCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 78999995221 10 11111 136899999999999999998743
No 124
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.66 E-value=1.2e-07 Score=91.65 Aligned_cols=105 Identities=12% Similarity=0.007 Sum_probs=77.1
Q ss_pred HHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC---CCeEEEEecCCCCCCCCCC
Q 006834 210 DNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG---VPAMIGVISSKRLPYPARA 286 (629)
Q Consensus 210 ~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg---~~~~~~v~d~~~Lp~pd~s 286 (629)
+.+.+.+....+. +|||+|||+|.++..+++++. .++++|+++.+++.++++. .++.+...|...+++++.+
T Consensus 3 ~~i~~~~~~~~~~--~vLEiG~G~G~lt~~l~~~~~---~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~ 77 (169)
T smart00650 3 DKIVRAANLRPGD--TVLEIGPGKGALTEELLERAA---RVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQ 77 (169)
T ss_pred HHHHHhcCCCCcC--EEEEECCCccHHHHHHHhcCC---eEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccC
Confidence 3455555544444 899999999999999999854 4567799999999998763 3578889999988888778
Q ss_pred eeEEEecCcccccccCHHHHHHHHHhc--ccCCcEEEEE
Q 006834 287 FDMAHCSGCLIPWYMYDGLYLLEVDRV--LRPGGYWILS 323 (629)
Q Consensus 287 FDlV~~s~~L~h~~~d~~~~L~el~Rv--LKPGG~liis 323 (629)
||.|+++..+ |.. ...+..+.+. +.++|.+++.
T Consensus 78 ~d~vi~n~Py-~~~---~~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 78 PYKVVGNLPY-NIS---TPILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred CCEEEECCCc-ccH---HHHHHHHHhcCCCcceEEEEEE
Confidence 9999987655 332 2334433332 4578888776
No 125
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.66 E-value=2.2e-08 Score=103.90 Aligned_cols=126 Identities=18% Similarity=0.252 Sum_probs=85.8
Q ss_pred hhchhhHHHHHHHHHHHHHhhc--ccCCC---------------CeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCC
Q 006834 452 EKLREDNELWKDRMTYYKKIDG--LFHKG---------------RYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNP 514 (629)
Q Consensus 452 ~~f~~d~~~w~~~v~~y~~~~~--~~~~~---------------~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~ 514 (629)
..|.+.+||-..++..|+.+.+ .+.+| .-..|||+|||+|+.+.+|++.. -..|+.+|.++
T Consensus 8 ~~~~~~~~y~~~~~~~~e~~~g~~~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~ 85 (263)
T PTZ00098 8 ITYLENNQYSDEGIKAYEFIFGEDYISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICE 85 (263)
T ss_pred hhhhhccccccccchhHHHHhCCCCCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCH
Confidence 4577788888888888887764 23332 22459999999999999987641 12455556666
Q ss_pred CchHHHHhhcc----cceeccccccCC--CCC-cccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 515 DTLGAIYERGL----IGTYQDWCEAFS--TYP-RTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 515 ~~l~~~~ergl----i~~~~~~~e~f~--~yp-~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
+++..+.++-- +.+.+ ..+. +|| .+||+|++..+|-.. ...+...+|.|+.|+|||||++++.|.
T Consensus 86 ~~~~~a~~~~~~~~~i~~~~---~D~~~~~~~~~~FD~V~s~~~l~h~-~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 86 KMVNIAKLRNSDKNKIEFEA---NDILKKDFPENTFDMIYSRDAILHL-SYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred HHHHHHHHHcCcCCceEEEE---CCcccCCCCCCCeEEEEEhhhHHhC-CHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 77887777632 22222 2222 355 799999985544321 223678899999999999999999875
No 126
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.66 E-value=5.4e-09 Score=98.27 Aligned_cols=94 Identities=24% Similarity=0.426 Sum_probs=69.3
Q ss_pred eeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcccceeccccccCCCCC-cccceeeccccccccCCC
Q 006834 480 YRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAFSTYP-RTYDLIHASGVFSIYQDR 558 (629)
Q Consensus 480 ~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergli~~~~~~~e~f~~yp-~t~Dl~H~~~~fs~~~~~ 558 (629)
-.+|||+|||.|.++..|++.+. +++.+|.++.++.. +......++ +.....| ++||+|.|..+|....
T Consensus 23 ~~~vLDiGcG~G~~~~~l~~~~~---~~~g~D~~~~~~~~---~~~~~~~~~--~~~~~~~~~~fD~i~~~~~l~~~~-- 92 (161)
T PF13489_consen 23 GKRVLDIGCGTGSFLRALAKRGF---EVTGVDISPQMIEK---RNVVFDNFD--AQDPPFPDGSFDLIICNDVLEHLP-- 92 (161)
T ss_dssp TSEEEEESSTTSHHHHHHHHTTS---EEEEEESSHHHHHH---TTSEEEEEE--CHTHHCHSSSEEEEEEESSGGGSS--
T ss_pred CCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHhh---hhhhhhhhh--hhhhhccccchhhHhhHHHHhhcc--
Confidence 33699999999999999988877 55666665445555 222222110 1122233 8999999999988766
Q ss_pred cCHHHHHHHHhhcccCCcEEEEEeCH
Q 006834 559 CDITNILLEMDRILRPEGTVIFRDTV 584 (629)
Q Consensus 559 c~~~~~l~e~dRiLrPgG~~i~~d~~ 584 (629)
+...+|.+|-|+|||||++++.+..
T Consensus 93 -d~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 93 -DPEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp -HHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred -cHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 4789999999999999999999765
No 127
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.66 E-value=1.9e-07 Score=92.86 Aligned_cols=113 Identities=19% Similarity=0.384 Sum_probs=80.6
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHH----HcC-----CCeEEEEec
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFAL----ERG-----VPAMIGVIS 276 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~----erg-----~~~~~~v~d 276 (629)
+...+.|.++++... .+|||||||||..+.+++++.+. +...+.|..+..+.... +.+ .++. .|
T Consensus 12 ~pIl~vL~~~l~~~~---~~vLEiaSGtGqHa~~FA~~lP~-l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~---lD 84 (204)
T PF06080_consen 12 DPILEVLKQYLPDSG---TRVLEIASGTGQHAVYFAQALPH-LTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLA---LD 84 (204)
T ss_pred hHHHHHHHHHhCccC---ceEEEEcCCccHHHHHHHHHCCC-CEEcCCCCChHHHhhHHHHHHhcCCcccCCCeE---ee
Confidence 445666666665421 15999999999999999998764 46888899888754333 222 1233 33
Q ss_pred CCCC--CC------CCCCeeEEEecCcccccccC--HHHHHHHHHhcccCCcEEEEEeCC
Q 006834 277 SKRL--PY------PARAFDMAHCSGCLIPWYMY--DGLYLLEVDRVLRPGGYWILSGPP 326 (629)
Q Consensus 277 ~~~L--p~------pd~sFDlV~~s~~L~h~~~d--~~~~L~el~RvLKPGG~liis~P~ 326 (629)
+..- +. ..++||+|+|.+++ |+.+- -+.++..+.++|+|||.|++.+|.
T Consensus 85 v~~~~w~~~~~~~~~~~~~D~i~~~N~l-HI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF 143 (204)
T PF06080_consen 85 VSAPPWPWELPAPLSPESFDAIFCINML-HISPWSAVEGLFAGAARLLKPGGLLFLYGPF 143 (204)
T ss_pred cCCCCCccccccccCCCCcceeeehhHH-HhcCHHHHHHHHHHHHHhCCCCCEEEEeCCc
Confidence 3222 22 35699999999988 66534 356999999999999999999983
No 128
>PRK00811 spermidine synthase; Provisional
Probab=98.66 E-value=2.2e-07 Score=97.53 Aligned_cols=101 Identities=13% Similarity=0.104 Sum_probs=75.1
Q ss_pred CCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----------CCCeEEEEecCCCC-CCCCCCeeEE
Q 006834 222 NIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----------GVPAMIGVISSKRL-PYPARAFDMA 290 (629)
Q Consensus 222 ~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----------g~~~~~~v~d~~~L-p~pd~sFDlV 290 (629)
.+++||++|||+|..+..++++.. +..++.+|+++.+++.|++. ..++.+...|.... ....++||+|
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~-~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPS-VEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCC-CCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 356899999999999999998621 22577889999999999864 23467777776543 3346789999
Q ss_pred EecCcccccccC----HHHHHHHHHhcccCCcEEEEEe
Q 006834 291 HCSGCLIPWYMY----DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 291 ~~s~~L~h~~~d----~~~~L~el~RvLKPGG~liis~ 324 (629)
++...- ++... ...+++.+.+.|+|||.+++..
T Consensus 155 i~D~~d-p~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 155 IVDSTD-PVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred EECCCC-CCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 985432 32211 2568899999999999998753
No 129
>PHA03411 putative methyltransferase; Provisional
Probab=98.65 E-value=1.8e-07 Score=97.00 Aligned_cols=98 Identities=11% Similarity=0.016 Sum_probs=76.7
Q ss_pred CeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCCCeeEEEecCcccccccC-
Q 006834 224 RTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMY- 302 (629)
Q Consensus 224 ~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d- 302 (629)
.+|||+|||+|.++..++.+.. ...++++|+++.+++.|+++..++.+...|...+. ..++||+|+++..+.+....
T Consensus 66 grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~-~~~kFDlIIsNPPF~~l~~~d 143 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFE-SNEKFDVVISNPPFGKINTTD 143 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhc-ccCCCcEEEEcCCccccCchh
Confidence 4899999999999988877632 13567889999999999987667888888887665 34689999998888764322
Q ss_pred ------------------HHHHHHHHHhcccCCcEEEEE
Q 006834 303 ------------------DGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 303 ------------------~~~~L~el~RvLKPGG~liis 323 (629)
...++..+.++|+|+|.+.+.
T Consensus 144 ~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 144 TKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred hhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 124667778899999977775
No 130
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.60 E-value=3.6e-07 Score=101.12 Aligned_cols=117 Identities=14% Similarity=0.102 Sum_probs=80.8
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCCeEE--EEecCCCCCC
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GVPAMI--GVISSKRLPY 282 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~~~~--~v~d~~~Lp~ 282 (629)
...+...+...++. +|||+|||+|..+..+++... ...++++|+++.+++.++++ +..+.+ ..+|....+.
T Consensus 227 s~~~~~~L~~~~g~--~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~ 303 (426)
T TIGR00563 227 AQWVATWLAPQNEE--TILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQ 303 (426)
T ss_pred HHHHHHHhCCCCCC--eEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccc
Confidence 34555555555554 899999999999999998643 23578889999999988765 444333 4445444443
Q ss_pred --CCCCeeEEEe----c--Cccccccc-----C----------HHHHHHHHHhcccCCcEEEEEeCCCC
Q 006834 283 --PARAFDMAHC----S--GCLIPWYM-----Y----------DGLYLLEVDRVLRPGGYWILSGPPIH 328 (629)
Q Consensus 283 --pd~sFDlV~~----s--~~L~h~~~-----d----------~~~~L~el~RvLKPGG~liis~P~~~ 328 (629)
+.++||.|++ + .++.+.++ . ...+|.++.++|||||.+++++...+
T Consensus 304 ~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 304 WAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred cccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 4678999995 2 23322211 1 24689999999999999999975443
No 131
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.60 E-value=9.9e-08 Score=95.43 Aligned_cols=139 Identities=13% Similarity=0.135 Sum_probs=89.3
Q ss_pred CCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC-----CCeEEEEecCCCCCCCCCCeeEEEecCcc
Q 006834 222 NIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG-----VPAMIGVISSKRLPYPARAFDMAHCSGCL 296 (629)
Q Consensus 222 ~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg-----~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L 296 (629)
...++||.|+|.|+.+..|+-.-+..+ .-+|..+.+++.|++.- .-..+.+...+.+..+.++||+|.+.+|+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~V--DlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEV--DLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCL 132 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEE--EEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred CcceEEecccccchhHHHHHHHhcCEe--EEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhh
Confidence 356899999999999998877656544 55799999999999642 22556666777665456799999999999
Q ss_pred cccccC-HHHHHHHHHhcccCCcEEEEEeCCCCccccccCccCcchhhhhHHHHHHHHHHHhcceeecc
Q 006834 297 IPWYMY-DGLYLLEVDRVLRPGGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIEDIAKRLCWKKLIE 364 (629)
Q Consensus 297 ~h~~~d-~~~~L~el~RvLKPGG~liis~P~~~w~~~~~~w~~~~e~l~~~~~~ie~l~~~l~w~~v~~ 364 (629)
.|+.++ ...+|..+...|+|||++++-..-...- ...+...........+.+.++.+..+++.+.+
T Consensus 133 ghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~--~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~ 199 (218)
T PF05891_consen 133 GHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSG--FDEFDEEDSSVTRSDEHFRELFKQAGLRLVKE 199 (218)
T ss_dssp GGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSS--EEEEETTTTEEEEEHHHHHHHHHHCT-EEEEE
T ss_pred ccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCC--CcccCCccCeeecCHHHHHHHHHHcCCEEEEe
Confidence 999844 3579999999999999999954211110 01233333344444566777888877766543
No 132
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.59 E-value=1e-07 Score=98.75 Aligned_cols=98 Identities=19% Similarity=0.173 Sum_probs=70.6
Q ss_pred eEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhhcc---------cceeccccccCCCCC-cccceeecc
Q 006834 481 RNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYERGL---------IGTYQDWCEAFSTYP-RTYDLIHAS 549 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~ergl---------i~~~~~~~e~f~~yp-~t~Dl~H~~ 549 (629)
..|||+|||+|.++..|.++ +. --+|+.+|.+++++..+.+|.- +...+.-.+.+ ++| .+||+|.+.
T Consensus 75 ~~VLDlGcGtG~~~~~la~~~~~-~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l-p~~~~sfD~V~~~ 152 (261)
T PLN02233 75 DRVLDLCCGSGDLAFLLSEKVGS-DGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL-PFDDCYFDAITMG 152 (261)
T ss_pred CEEEEECCcCCHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC-CCCCCCEeEEEEe
Confidence 36999999999999888764 21 0256677777789999877631 22233222333 355 799999987
Q ss_pred ccccccCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 550 GVFSIYQDRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 550 ~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
.++.... +...+|.||-|+|||||.+++.|-
T Consensus 153 ~~l~~~~---d~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 153 YGLRNVV---DRLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred cccccCC---CHHHHHHHHHHHcCcCcEEEEEEC
Confidence 6665443 568899999999999999999763
No 133
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.59 E-value=4e-07 Score=92.07 Aligned_cols=113 Identities=19% Similarity=0.194 Sum_probs=81.5
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHH-cCC----------------
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALE-RGV---------------- 268 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~e-rg~---------------- 268 (629)
..+.+.+.+ +.... ..+||..|||.|.-+.+|+++|..+ +|+|+|+.+++.+.+ ++.
T Consensus 24 p~L~~~~~~-l~~~~--~~rvLvPgCG~g~D~~~La~~G~~V---vGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~ 97 (218)
T PF05724_consen 24 PALVEYLDS-LALKP--GGRVLVPGCGKGYDMLWLAEQGHDV---VGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAG 97 (218)
T ss_dssp HHHHHHHHH-HTTST--SEEEEETTTTTSCHHHHHHHTTEEE---EEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTS
T ss_pred HHHHHHHHh-cCCCC--CCeEEEeCCCChHHHHHHHHCCCeE---EEEecCHHHHHHHHHHhccCCCcccccceeeecCC
Confidence 444444444 33333 3489999999999999999998755 555999999999853 321
Q ss_pred CeEEEEecCCCCCCCC-CCeeEEEecCcccccccC-HHHHHHHHHhcccCCcEEEEEe
Q 006834 269 PAMIGVISSKRLPYPA-RAFDMAHCSGCLIPWYMY-DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 269 ~~~~~v~d~~~Lp~pd-~sFDlV~~s~~L~h~~~d-~~~~L~el~RvLKPGG~liis~ 324 (629)
.+.+.++|...++-.. ++||+|+-..+|+-++++ ...+.+.+.++|+|||.+++.+
T Consensus 98 ~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~ 155 (218)
T PF05724_consen 98 RITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLIT 155 (218)
T ss_dssp SEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEE
T ss_pred ceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 3567788888876433 589999987777666655 5789999999999999955543
No 134
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.59 E-value=4.2e-07 Score=90.34 Aligned_cols=124 Identities=20% Similarity=0.231 Sum_probs=74.4
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCCCee
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFD 288 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~sFD 288 (629)
.+.|.+.+...+. ...|.|+|||.+.++..+. .+..+.++ |+... +-.+..+|+..+|+++++.|
T Consensus 60 vd~iI~~l~~~~~-~~viaD~GCGdA~la~~~~-~~~~V~Sf---DLva~----------n~~Vtacdia~vPL~~~svD 124 (219)
T PF05148_consen 60 VDVIIEWLKKRPK-SLVIADFGCGDAKLAKAVP-NKHKVHSF---DLVAP----------NPRVTACDIANVPLEDESVD 124 (219)
T ss_dssp HHHHHHHHCTS-T-TS-EEEES-TT-HHHHH---S---EEEE---ESS-S----------STTEEES-TTS-S--TT-EE
T ss_pred HHHHHHHHHhcCC-CEEEEECCCchHHHHHhcc-cCceEEEe---eccCC----------CCCEEEecCccCcCCCCcee
Confidence 4455555554332 3489999999999986654 34455566 77521 12366789999999999999
Q ss_pred EEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeCCCCccccccCccCcchhhhhHHHHHHHHHHHhcceeecc
Q 006834 289 MAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIEDIAKRLCWKKLIE 364 (629)
Q Consensus 289 lV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P~~~w~~~~~~w~~~~e~l~~~~~~ie~l~~~l~w~~v~~ 364 (629)
++++...|+ ..+-..++.|+.|+|||||.|+|+.-... . . ..+.+.+..++++++...+
T Consensus 125 v~VfcLSLM--GTn~~~fi~EA~RvLK~~G~L~IAEV~SR----f----------~-~~~~F~~~~~~~GF~~~~~ 183 (219)
T PF05148_consen 125 VAVFCLSLM--GTNWPDFIREANRVLKPGGILKIAEVKSR----F----------E-NVKQFIKALKKLGFKLKSK 183 (219)
T ss_dssp EEEEES-----SS-HHHHHHHHHHHEEEEEEEEEEEEGGG---------------S--HHHHHHHHHCTTEEEEEE
T ss_pred EEEEEhhhh--CCCcHHHHHHHHheeccCcEEEEEEeccc----C----------c-CHHHHHHHHHHCCCeEEec
Confidence 999877763 33678899999999999999999842111 1 1 2345667788999987764
No 135
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.58 E-value=4.4e-07 Score=100.70 Aligned_cols=117 Identities=15% Similarity=0.096 Sum_probs=82.7
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCCCC--
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKRLP-- 281 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~Lp-- 281 (629)
...+...+...++. +|||+|||+|..+..+++.......++++|+++.+++.++++ |. ++.+...|...++
T Consensus 241 s~l~~~~l~~~~g~--~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~ 318 (434)
T PRK14901 241 AQLVAPLLDPQPGE--VILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLEL 318 (434)
T ss_pred HHHHHHHhCCCCcC--EEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccc
Confidence 33444455544444 899999999999999988632222567889999999988764 33 4777888877765
Q ss_pred --CCCCCeeEEEec------Cccccccc-----C----------HHHHHHHHHhcccCCcEEEEEeCCC
Q 006834 282 --YPARAFDMAHCS------GCLIPWYM-----Y----------DGLYLLEVDRVLRPGGYWILSGPPI 327 (629)
Q Consensus 282 --~pd~sFDlV~~s------~~L~h~~~-----d----------~~~~L~el~RvLKPGG~liis~P~~ 327 (629)
+..++||.|++. .++.+-++ . ...+|.++.++|||||+++.++...
T Consensus 319 ~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 319 KPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred cccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 446789999962 22222110 0 2468999999999999999986443
No 136
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.57 E-value=2.4e-07 Score=103.06 Aligned_cols=111 Identities=15% Similarity=0.169 Sum_probs=78.0
Q ss_pred hhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCCCCCCCCCee
Q 006834 214 ELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKRLPYPARAFD 288 (629)
Q Consensus 214 ~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~Lp~pd~sFD 288 (629)
..+...++ .+|||+|||+|..+..+++.......++++|+++.+++.++++ +. ++.+...|...++ ++++||
T Consensus 244 ~~l~~~~g--~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD 320 (445)
T PRK14904 244 LLLNPQPG--STVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPD 320 (445)
T ss_pred HhcCCCCC--CEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCC
Confidence 34444444 4899999999999988887532222567789999999988764 43 4677778877665 567899
Q ss_pred EEEec----C--ccc-----ccccC----------HHHHHHHHHhcccCCcEEEEEeCCC
Q 006834 289 MAHCS----G--CLI-----PWYMY----------DGLYLLEVDRVLRPGGYWILSGPPI 327 (629)
Q Consensus 289 lV~~s----~--~L~-----h~~~d----------~~~~L~el~RvLKPGG~liis~P~~ 327 (629)
+|++- . .+. .|... ...+|.++.++|||||++++++...
T Consensus 321 ~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 321 AILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred EEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 99951 1 110 11111 2358999999999999999997544
No 137
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.57 E-value=4.5e-08 Score=102.13 Aligned_cols=102 Identities=19% Similarity=0.332 Sum_probs=68.1
Q ss_pred ccCCCCeeEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHH----HHhhcccceeccccccCCCCCcccceeec
Q 006834 474 LFHKGRYRNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGA----IYERGLIGTYQDWCEAFSTYPRTYDLIHA 548 (629)
Q Consensus 474 ~~~~~~~R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~----~~ergli~~~~~~~e~f~~yp~t~Dl~H~ 548 (629)
.|.+|. .|||+|||.||++.+++++ ++-|.-|. .++++... +.++||-....--+..+..++.+||-|=+
T Consensus 59 ~l~~G~--~vLDiGcGwG~~~~~~a~~~g~~v~git---lS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~fD~IvS 133 (273)
T PF02353_consen 59 GLKPGD--RVLDIGCGWGGLAIYAAERYGCHVTGIT---LSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKFDRIVS 133 (273)
T ss_dssp T--TT---EEEEES-TTSHHHHHHHHHH--EEEEEE---S-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-SEEEE
T ss_pred CCCCCC--EEEEeCCCccHHHHHHHHHcCcEEEEEE---CCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCCCEEEE
Confidence 377776 5999999999999999988 66333332 33455554 56888855444444566677779999999
Q ss_pred cccccccCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006834 549 SGVFSIYQDRCDITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 549 ~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
.++|..-.. -+.+.++..++|+|+|||.+++.
T Consensus 134 i~~~Ehvg~-~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 134 IEMFEHVGR-KNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp ESEGGGTCG-GGHHHHHHHHHHHSETTEEEEEE
T ss_pred EechhhcCh-hHHHHHHHHHHHhcCCCcEEEEE
Confidence 888876543 46789999999999999999984
No 138
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.56 E-value=3.2e-07 Score=91.23 Aligned_cols=104 Identities=22% Similarity=0.277 Sum_probs=68.0
Q ss_pred CCCCeEEEeCCCCc----hHHHHHHHc--C--CcEeEEEeecCcHHHHHHHHHc--------C-----------------
Q 006834 221 GNIRTAVDTGCGVA----SWGAYLLKR--D--ILTMSFARRDTHEAQVQFALER--------G----------------- 267 (629)
Q Consensus 221 g~~~~VLDIGCGtG----~~a~~La~~--g--~~~v~i~gvDiS~~~i~~A~er--------g----------------- 267 (629)
+..-+|+..||++| +++..|.+. + ...+.|.++|+|+.+++.|++- +
T Consensus 30 ~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~ 109 (196)
T PF01739_consen 30 GRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGG 109 (196)
T ss_dssp -S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCC
T ss_pred CCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCc
Confidence 34568999999999 455555551 1 2246889999999999999831 0
Q ss_pred --------CCeEEEEecCCCCCCCCCCeeEEEecCcccccccC-HHHHHHHHHhcccCCcEEEEEe
Q 006834 268 --------VPAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMY-DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 268 --------~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d-~~~~L~el~RvLKPGG~liis~ 324 (629)
..+.|...+....+.+.+.||+|+|-++|+++... ...++..+++.|+|||+|++..
T Consensus 110 ~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 110 YRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 13667777776634456899999999999988754 4579999999999999999963
No 139
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.56 E-value=2e-07 Score=95.43 Aligned_cols=99 Identities=18% Similarity=0.246 Sum_probs=70.3
Q ss_pred CCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcc-cceeccccccCCCCCcccceeeccccccccC
Q 006834 478 GRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGL-IGTYQDWCEAFSTYPRTYDLIHASGVFSIYQ 556 (629)
Q Consensus 478 ~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergl-i~~~~~~~e~f~~yp~t~Dl~H~~~~fs~~~ 556 (629)
....+|||+|||+|.++..|.+.+. .|+.+|.++.++..+.++.- +.....=.+.++..+.+||+|-++..+..
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~-- 115 (251)
T PRK10258 41 RKFTHVLDAGCGPGWMSRYWRERGS---QVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNLAVQW-- 115 (251)
T ss_pred cCCCeEEEeeCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECchhhh--
Confidence 3455799999999999999987653 55666777788888888753 22222111333322379999987554432
Q ss_pred CCcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 557 DRCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 557 ~~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
--+...+|.|+.|+|||||.++++.
T Consensus 116 -~~d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 116 -CGNLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred -cCCHHHHHHHHHHHcCCCeEEEEEe
Confidence 2356889999999999999999984
No 140
>PRK01581 speE spermidine synthase; Validated
Probab=98.55 E-value=3.1e-07 Score=98.75 Aligned_cols=116 Identities=15% Similarity=0.116 Sum_probs=81.1
Q ss_pred HHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc------------CCCeEEEE
Q 006834 207 AYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER------------GVPAMIGV 274 (629)
Q Consensus 207 ~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er------------g~~~~~~v 274 (629)
.|.+.+....-.....+++||++|||+|..+..+++... +..++.+|+++++++.|++. ..++.+.+
T Consensus 135 iYHE~Lvhp~m~~h~~PkrVLIIGgGdG~tlrelLk~~~-v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi 213 (374)
T PRK01581 135 IYHEALVHPIMSKVIDPKRVLILGGGDGLALREVLKYET-VLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHV 213 (374)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHhcCC-CCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEE
Confidence 345555443222223456999999999999999988642 33678889999999999961 24677778
Q ss_pred ecCCC-CCCCCCCeeEEEecCccccccc-----CHHHHHHHHHhcccCCcEEEEEe
Q 006834 275 ISSKR-LPYPARAFDMAHCSGCLIPWYM-----YDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 275 ~d~~~-Lp~pd~sFDlV~~s~~L~h~~~-----d~~~~L~el~RvLKPGG~liis~ 324 (629)
.|... +.-..++||+|++...- +... ....++..+.+.|+|||.+++..
T Consensus 214 ~Da~~fL~~~~~~YDVIIvDl~D-P~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 214 CDAKEFLSSPSSLYDVIIIDFPD-PATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred CcHHHHHHhcCCCccEEEEcCCC-ccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 77665 33345789999986321 1110 12568999999999999998863
No 141
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.55 E-value=1.4e-07 Score=96.29 Aligned_cols=114 Identities=22% Similarity=0.306 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHhhcccCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcc------cceeccc
Q 006834 459 ELWKDRMTYYKKIDGLFHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGL------IGTYQDW 532 (629)
Q Consensus 459 ~~w~~~v~~y~~~~~~~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergl------i~~~~~~ 532 (629)
..|++..-. .+ .+.+|. +|||++||+|=+|..+++.-= .-.|+.+|-+.+||.++.+|-- |-.++.-
T Consensus 37 ~~Wr~~~i~---~~-~~~~g~--~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~d 109 (238)
T COG2226 37 RLWRRALIS---LL-GIKPGD--KVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGD 109 (238)
T ss_pred HHHHHHHHH---hh-CCCCCC--EEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEec
Confidence 677765431 11 123444 599999999999999987621 4567777888899999999876 2233433
Q ss_pred cccCCCCC-cccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 533 CEAFSTYP-RTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 533 ~e~f~~yp-~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
-|.++ || +|||++=+...+-+- -+++..|.||.|||||||.+++-+.
T Consensus 110 Ae~LP-f~D~sFD~vt~~fglrnv---~d~~~aL~E~~RVlKpgG~~~vle~ 157 (238)
T COG2226 110 AENLP-FPDNSFDAVTISFGLRNV---TDIDKALKEMYRVLKPGGRLLVLEF 157 (238)
T ss_pred hhhCC-CCCCccCEEEeeehhhcC---CCHHHHHHHHHHhhcCCeEEEEEEc
Confidence 46666 66 999997764333322 3789999999999999999988654
No 142
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.54 E-value=3.1e-07 Score=95.34 Aligned_cols=111 Identities=10% Similarity=0.124 Sum_probs=77.7
Q ss_pred hcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCCCCCCCCCeeE
Q 006834 215 LIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKRLPYPARAFDM 289 (629)
Q Consensus 215 lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~Lp~pd~sFDl 289 (629)
.+...++. +|||+|||+|..+..+++.......++++|+++.+++.++++ +. ++.+...|...++...+.||.
T Consensus 66 ~l~~~~g~--~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~ 143 (264)
T TIGR00446 66 ALEPDPPE--RVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDA 143 (264)
T ss_pred HhCCCCcC--EEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCE
Confidence 34444444 899999999999999988632222567889999999988764 32 467777777666655567999
Q ss_pred EEecC------cccc-------ccc--------CHHHHHHHHHhcccCCcEEEEEeCCC
Q 006834 290 AHCSG------CLIP-------WYM--------YDGLYLLEVDRVLRPGGYWILSGPPI 327 (629)
Q Consensus 290 V~~s~------~L~h-------~~~--------d~~~~L~el~RvLKPGG~liis~P~~ 327 (629)
|++.. ++.+ +.+ ....+|..+.++|||||+++.++...
T Consensus 144 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 144 ILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred EEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 99621 1111 110 12358999999999999999987544
No 143
>PHA03412 putative methyltransferase; Provisional
Probab=98.53 E-value=4.6e-07 Score=92.13 Aligned_cols=96 Identities=10% Similarity=0.047 Sum_probs=72.6
Q ss_pred CCeEEEeCCCCchHHHHHHHcCC--cEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCCCeeEEEecCcccccc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDI--LTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCSGCLIPWY 300 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~--~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~ 300 (629)
..+|||+|||+|.++..++++.. ....++++|+++.+++.|+++...+.+...|....++ +++||+|+++.-+....
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~~ 128 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPPFGKIK 128 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCCCCCcc
Confidence 34899999999999999887521 2346888999999999999887678888888876554 56899999987664222
Q ss_pred cC-----------HHHHHHHHHhcccCCcE
Q 006834 301 MY-----------DGLYLLEVDRVLRPGGY 319 (629)
Q Consensus 301 ~d-----------~~~~L~el~RvLKPGG~ 319 (629)
.. ...++..+.+++++|+.
T Consensus 129 ~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 129 TSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred ccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 11 23478888887777775
No 144
>PLN02244 tocopherol O-methyltransferase
Probab=98.53 E-value=1.6e-07 Score=100.99 Aligned_cols=95 Identities=18% Similarity=0.264 Sum_probs=64.5
Q ss_pred eeEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHH----hhccc---ceec-cccccCCCCC-cccceeecc
Q 006834 480 YRNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIY----ERGLI---GTYQ-DWCEAFSTYP-RTYDLIHAS 549 (629)
Q Consensus 480 ~R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~----ergli---~~~~-~~~e~f~~yp-~t~Dl~H~~ 549 (629)
-..|||+|||.|+++.+|+++ +. +|+.+|.++.++..+. ++|+. .... |.. .+ ++| .+||+|.+.
T Consensus 119 ~~~VLDiGCG~G~~~~~La~~~g~---~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~-~~-~~~~~~FD~V~s~ 193 (340)
T PLN02244 119 PKRIVDVGCGIGGSSRYLARKYGA---NVKGITLSPVQAARANALAAAQGLSDKVSFQVADAL-NQ-PFEDGQFDLVWSM 193 (340)
T ss_pred CCeEEEecCCCCHHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcc-cC-CCCCCCccEEEEC
Confidence 356999999999999999875 32 3444454545555443 34652 2222 222 22 344 899999986
Q ss_pred ccccccCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 550 GVFSIYQDRCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 550 ~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
..+.... +...+|.||-|+|||||.++|.+
T Consensus 194 ~~~~h~~---d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 194 ESGEHMP---DKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred CchhccC---CHHHHHHHHHHHcCCCcEEEEEE
Confidence 5554333 46889999999999999999964
No 145
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.53 E-value=2.1e-07 Score=95.79 Aligned_cols=106 Identities=14% Similarity=0.182 Sum_probs=75.0
Q ss_pred hhcccCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcccceeccccccCCCCCcccceeeccc
Q 006834 471 IDGLFHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAFSTYPRTYDLIHASG 550 (629)
Q Consensus 471 ~~~~~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergli~~~~~~~e~f~~yp~t~Dl~H~~~ 550 (629)
++..+....-..|||+|||.|.++.+|.++.- ...|+.+|.++.++..+.++++ .+.+.=.+.+. ...+||+|++..
T Consensus 21 ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p-~~~v~gvD~s~~~~~~a~~~~~-~~~~~d~~~~~-~~~~fD~v~~~~ 97 (255)
T PRK14103 21 LLARVGAERARRVVDLGCGPGNLTRYLARRWP-GAVIEALDSSPEMVAAARERGV-DARTGDVRDWK-PKPDTDVVVSNA 97 (255)
T ss_pred HHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHhcCC-cEEEcChhhCC-CCCCceEEEEeh
Confidence 44444433345799999999999999987610 1245666777789999998875 33331112231 237999999988
Q ss_pred cccccCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 551 VFSIYQDRCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 551 ~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
+|-... +.+.+|.++-|+|||||++++..
T Consensus 98 ~l~~~~---d~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 98 ALQWVP---EHADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred hhhhCC---CHHHHHHHHHHhCCCCcEEEEEc
Confidence 775433 45889999999999999999963
No 146
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.51 E-value=7.1e-07 Score=99.01 Aligned_cols=115 Identities=17% Similarity=0.157 Sum_probs=80.8
Q ss_pred HHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCCCC-CCC
Q 006834 211 NINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKRLP-YPA 284 (629)
Q Consensus 211 ~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~Lp-~pd 284 (629)
.+..++...++. +|||+|||+|..+..+++.......++++|+++.+++.++++ +. ++.+.+.|...++ +..
T Consensus 228 ~~~~~l~~~~g~--~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~ 305 (431)
T PRK14903 228 IVPLLMELEPGL--RVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQ 305 (431)
T ss_pred HHHHHhCCCCCC--EEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhh
Confidence 344444444444 899999999999999988632223567789999999999865 33 3677788877766 456
Q ss_pred CCeeEEEecC-c--cccccc------------------CHHHHHHHHHhcccCCcEEEEEeCCC
Q 006834 285 RAFDMAHCSG-C--LIPWYM------------------YDGLYLLEVDRVLRPGGYWILSGPPI 327 (629)
Q Consensus 285 ~sFDlV~~s~-~--L~h~~~------------------d~~~~L~el~RvLKPGG~liis~P~~ 327 (629)
++||.|++.. | +-.+.. ....+|.++.+.|||||+++.++...
T Consensus 306 ~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 306 DTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred ccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 7899999621 1 111111 12357899999999999999997544
No 147
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.51 E-value=7.1e-07 Score=90.93 Aligned_cols=97 Identities=21% Similarity=0.154 Sum_probs=77.5
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCCCeeEEEecCcccccccC
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMY 302 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d 302 (629)
.++|||||+|.|.++..++++.+.. .++..|. ++.++.+++ ..++.+..+|.. -++|. +|+++..++||+|.++
T Consensus 101 ~~~vvDvGGG~G~~~~~l~~~~P~l-~~~v~Dl-p~v~~~~~~-~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~~~d~ 174 (241)
T PF00891_consen 101 FKTVVDVGGGSGHFAIALARAYPNL-RATVFDL-PEVIEQAKE-ADRVEFVPGDFF-DPLPV--ADVYLLRHVLHDWSDE 174 (241)
T ss_dssp SSEEEEET-TTSHHHHHHHHHSTTS-EEEEEE--HHHHCCHHH-TTTEEEEES-TT-TCCSS--ESEEEEESSGGGS-HH
T ss_pred ccEEEeccCcchHHHHHHHHHCCCC-cceeecc-Hhhhhcccc-ccccccccccHH-hhhcc--ccceeeehhhhhcchH
Confidence 4589999999999999999987643 4566798 778888887 667999988887 56665 9999999999999854
Q ss_pred H-HHHHHHHHhcccCC--cEEEEEeC
Q 006834 303 D-GLYLLEVDRVLRPG--GYWILSGP 325 (629)
Q Consensus 303 ~-~~~L~el~RvLKPG--G~liis~P 325 (629)
. ..+|+++++.|+|| |.++|..+
T Consensus 175 ~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 175 DCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp HHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 3 56999999999999 99999753
No 148
>PRK04457 spermidine synthase; Provisional
Probab=98.49 E-value=7.5e-07 Score=92.49 Aligned_cols=115 Identities=9% Similarity=0.066 Sum_probs=79.8
Q ss_pred HHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC------CCeEEEEecCCCC
Q 006834 207 AYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG------VPAMIGVISSKRL 280 (629)
Q Consensus 207 ~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg------~~~~~~v~d~~~L 280 (629)
.|.+.+...+... ..+++|||||||.|.++..+++... ...++++|+++++++.|++.. .++.+.++|....
T Consensus 52 ~y~~~m~~~l~~~-~~~~~vL~IG~G~G~l~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~ 129 (262)
T PRK04457 52 AYTRAMMGFLLFN-PRPQHILQIGLGGGSLAKFIYTYLP-DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEY 129 (262)
T ss_pred HHHHHHHHHHhcC-CCCCEEEEECCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHH
Confidence 3454443333222 2345899999999999999988754 346788899999999999752 3467777776432
Q ss_pred -CCCCCCeeEEEecCcc-ccccc--CHHHHHHHHHhcccCCcEEEEE
Q 006834 281 -PYPARAFDMAHCSGCL-IPWYM--YDGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 281 -p~pd~sFDlV~~s~~L-~h~~~--d~~~~L~el~RvLKPGG~liis 323 (629)
.-..++||+|++...- ...+. ....+++++.++|+|||.+++.
T Consensus 130 l~~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 130 IAVHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred HHhCCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 2224689999974311 11111 1368999999999999999996
No 149
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=98.49 E-value=9.5e-08 Score=84.86 Aligned_cols=96 Identities=26% Similarity=0.417 Sum_probs=69.5
Q ss_pred EEEeecccchhHHhhhhC--CCeEEEEecCCCCCCCchHHHHhhc----c---cceec-cccccCCCCCcccceeecccc
Q 006834 482 NVMDMNAYLGGFAAAMSK--YPVWVMNVVPFHSNPDTLGAIYERG----L---IGTYQ-DWCEAFSTYPRTYDLIHASGV 551 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~--~~v~~mnv~~~~~~~~~l~~~~erg----l---i~~~~-~~~e~f~~yp~t~Dl~H~~~~ 551 (629)
.|||+|||+|.++.+|++ .+. .|+.+|.++.+++.+.++- + |..++ |+ ......+..||+|.+.+
T Consensus 4 ~vLDlGcG~G~~~~~l~~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~~~- 78 (112)
T PF12847_consen 4 RVLDLGCGTGRLSIALARLFPGA---RVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDFLEPFDLVICSG- 78 (112)
T ss_dssp EEEEETTTTSHHHHHHHHHHTTS---EEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTTSSCEEEEEECS-
T ss_pred EEEEEcCcCCHHHHHHHhcCCCC---EEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcccCCCCCEEEECC-
Confidence 589999999999999998 554 3455566667888877765 3 44444 33 22244556799999988
Q ss_pred cc--ccCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 552 FS--IYQDRCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 552 fs--~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
|+ .+-+......+|.++.+.|||||+++|++
T Consensus 79 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 79 FTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 42 22222456779999999999999999975
No 150
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=98.48 E-value=1.5e-07 Score=96.05 Aligned_cols=114 Identities=21% Similarity=0.315 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHhhcccCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhc----c--cceeccc
Q 006834 459 ELWKDRMTYYKKIDGLFHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERG----L--IGTYQDW 532 (629)
Q Consensus 459 ~~w~~~v~~y~~~~~~~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~erg----l--i~~~~~~ 532 (629)
+.|++.+..... +.++. .|||++||+|-.+..|++.-----.|+.+|-++++|..+.+|- + |-..+.=
T Consensus 33 ~~wr~~~~~~~~----~~~g~--~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~d 106 (233)
T PF01209_consen 33 RRWRRKLIKLLG----LRPGD--RVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGD 106 (233)
T ss_dssp ----SHHHHHHT------S----EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-B
T ss_pred HHHHHHHHhccC----CCCCC--EEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcC
Confidence 678876654322 33444 6999999999999988764111125666777789999998873 2 3333333
Q ss_pred cccCCCCC-cccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 533 CEAFSTYP-RTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 533 ~e~f~~yp-~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
.|.++ || .+||.+=+...+- +-.+.+..|.||-|||||||.++|-|
T Consensus 107 a~~lp-~~d~sfD~v~~~fglr---n~~d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 107 AEDLP-FPDNSFDAVTCSFGLR---NFPDRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp TTB---S-TT-EEEEEEES-GG---G-SSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHhc-CCCCceeEEEHHhhHH---hhCCHHHHHHHHHHHcCCCeEEEEee
Confidence 34544 55 9999977644333 23567999999999999999999865
No 151
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.48 E-value=7.6e-07 Score=90.42 Aligned_cols=123 Identities=19% Similarity=0.226 Sum_probs=82.5
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCCCee
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFD 288 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~sFD 288 (629)
++.|.+.|...++ ...|.|+|||.+.++. .....+.++ |+.+ .+-.+..+|+.++|+++++.|
T Consensus 168 ld~ii~~ik~r~~-~~vIaD~GCGEakiA~---~~~~kV~Sf---DL~a----------~~~~V~~cDm~~vPl~d~svD 230 (325)
T KOG3045|consen 168 LDVIIRKIKRRPK-NIVIADFGCGEAKIAS---SERHKVHSF---DLVA----------VNERVIACDMRNVPLEDESVD 230 (325)
T ss_pred HHHHHHHHHhCcC-ceEEEecccchhhhhh---ccccceeee---eeec----------CCCceeeccccCCcCccCccc
Confidence 3444444444333 3478999999998765 222234455 6641 234567789999999999999
Q ss_pred EEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeCCCCccccccCccCcchhhhhHHHHHHHHHHHhcceeeccc
Q 006834 289 MAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIEDIAKRLCWKKLIEK 365 (629)
Q Consensus 289 lV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P~~~w~~~~~~w~~~~e~l~~~~~~ie~l~~~l~w~~v~~~ 365 (629)
++++...| +..+...++.|++|+|+|||.|+|..-... + .....+......++|......
T Consensus 231 vaV~CLSL--Mgtn~~df~kEa~RiLk~gG~l~IAEv~SR----f-----------~dv~~f~r~l~~lGF~~~~~d 290 (325)
T KOG3045|consen 231 VAVFCLSL--MGTNLADFIKEANRILKPGGLLYIAEVKSR----F-----------SDVKGFVRALTKLGFDVKHKD 290 (325)
T ss_pred EEEeeHhh--hcccHHHHHHHHHHHhccCceEEEEehhhh----c-----------ccHHHHHHHHHHcCCeeeehh
Confidence 99975554 444788999999999999999999742111 1 112336677788888765433
No 152
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.47 E-value=2e-06 Score=87.67 Aligned_cols=110 Identities=17% Similarity=0.193 Sum_probs=85.7
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHc----C--CCeEEEEecCCCCC
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKR-DILTMSFARRDTHEAQVQFALER----G--VPAMIGVISSKRLP 281 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~er----g--~~~~~~v~d~~~Lp 281 (629)
+..|...+...+++ +|||.|.|+|.++.+|+.. +..+ .++.+|+.++..+.|+++ + ..+.+...|....-
T Consensus 83 ~~~I~~~~gi~pg~--rVlEAGtGSG~lt~~La~~vg~~G-~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~ 159 (256)
T COG2519 83 AGYIVARLGISPGS--RVLEAGTGSGALTAYLARAVGPEG-HVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGI 159 (256)
T ss_pred HHHHHHHcCCCCCC--EEEEcccCchHHHHHHHHhhCCCc-eEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccc
Confidence 44666777777777 9999999999999999963 3322 456669999999999976 2 23667777776665
Q ss_pred CCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeCCCC
Q 006834 282 YPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPPIH 328 (629)
Q Consensus 282 ~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P~~~ 328 (629)
+++ .||+|+. .++ +|-.++..+.++|+|||.+++..|..+
T Consensus 160 ~~~-~vDav~L-----Dmp-~PW~~le~~~~~Lkpgg~~~~y~P~ve 199 (256)
T COG2519 160 DEE-DVDAVFL-----DLP-DPWNVLEHVSDALKPGGVVVVYSPTVE 199 (256)
T ss_pred ccc-ccCEEEE-----cCC-ChHHHHHHHHHHhCCCcEEEEEcCCHH
Confidence 554 8999985 444 788899999999999999999987553
No 153
>PLN02366 spermidine synthase
Probab=98.47 E-value=1.5e-06 Score=92.34 Aligned_cols=100 Identities=12% Similarity=0.101 Sum_probs=74.2
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC---------CCeEEEEecCCCC-C-CCCCCeeEEE
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG---------VPAMIGVISSKRL-P-YPARAFDMAH 291 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg---------~~~~~~v~d~~~L-p-~pd~sFDlV~ 291 (629)
+++||+||||.|..+.+++++. .+..++.+|+++.+++.|++.. .++.+...|.... . .++++||+|+
T Consensus 92 pkrVLiIGgG~G~~~rellk~~-~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi 170 (308)
T PLN02366 92 PKKVLVVGGGDGGVLREIARHS-SVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAII 170 (308)
T ss_pred CCeEEEEcCCccHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEE
Confidence 5689999999999999999873 3346777899999999998742 3577788776432 1 2357899999
Q ss_pred ecCcccccccC----HHHHHHHHHhcccCCcEEEEEe
Q 006834 292 CSGCLIPWYMY----DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 292 ~s~~L~h~~~d----~~~~L~el~RvLKPGG~liis~ 324 (629)
+-..- +.... ...+++.+.++|+|||.++...
T Consensus 171 ~D~~d-p~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 171 VDSSD-PVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EcCCC-CCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 84432 22211 2468999999999999997753
No 154
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.46 E-value=3.7e-06 Score=85.58 Aligned_cols=103 Identities=16% Similarity=0.123 Sum_probs=67.4
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeE-EEEecCCCCC-----C
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAM-IGVISSKRLP-----Y 282 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~-~~v~d~~~Lp-----~ 282 (629)
...+.+.+... -.+.+|||+|||+|.|+..++++|.. .++++|+++.|+....+....+. +...+...+. .
T Consensus 63 L~~~l~~~~~~-~~~~~vlDiG~gtG~~t~~l~~~ga~--~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~ 139 (228)
T TIGR00478 63 LKEALEEFNID-VKNKIVLDVGSSTGGFTDCALQKGAK--EVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFP 139 (228)
T ss_pred HHHHHHhcCCC-CCCCEEEEcccCCCHHHHHHHHcCCC--EEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCC
Confidence 44444444321 23448999999999999999999754 46778999988887554444432 3333433222 1
Q ss_pred CCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 283 PARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 283 pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
.-..||+++++..+ .|..+.++|+| |.+++..
T Consensus 140 d~~~~DvsfiS~~~---------~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 140 DFATFDVSFISLIS---------ILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred CceeeeEEEeehHh---------HHHHHHHHhCc-CeEEEEc
Confidence 22367877776644 47889999999 7777654
No 155
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.46 E-value=8.6e-07 Score=98.68 Aligned_cols=114 Identities=16% Similarity=0.179 Sum_probs=79.2
Q ss_pred HHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCCCC--C
Q 006834 210 DNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKRLP--Y 282 (629)
Q Consensus 210 ~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~Lp--~ 282 (629)
..+...+...++. +|||+|||+|..+..+++.......++++|+++.+++.++++ +. ++.+...|...++ +
T Consensus 240 ~lv~~~l~~~~g~--~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~ 317 (444)
T PRK14902 240 MLVAPALDPKGGD--TVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKF 317 (444)
T ss_pred HHHHHHhCCCCCC--EEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchh
Confidence 3444555544444 899999999999999998631123577889999999998764 32 4677888876653 3
Q ss_pred CCCCeeEEEecCc------ccc-----cccC----------HHHHHHHHHhcccCCcEEEEEeCC
Q 006834 283 PARAFDMAHCSGC------LIP-----WYMY----------DGLYLLEVDRVLRPGGYWILSGPP 326 (629)
Q Consensus 283 pd~sFDlV~~s~~------L~h-----~~~d----------~~~~L~el~RvLKPGG~liis~P~ 326 (629)
+ ++||+|++..- +.+ |... ...+|.++.++|||||.++.++..
T Consensus 318 ~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 318 A-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred c-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 3 78999997421 111 1101 135799999999999999988643
No 156
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.46 E-value=1.6e-06 Score=90.37 Aligned_cols=101 Identities=12% Similarity=0.078 Sum_probs=73.0
Q ss_pred CCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC---------CCeEEEEecCCCC-CCCCCCeeEEE
Q 006834 222 NIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG---------VPAMIGVISSKRL-PYPARAFDMAH 291 (629)
Q Consensus 222 ~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg---------~~~~~~v~d~~~L-p~pd~sFDlV~ 291 (629)
.+++||+||||+|.++..+++... ...++.+|+++++++.|++.. ..+.+...|.... ....++||+|+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~-~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKS-VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCC-cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 355999999999999999988752 235778899999999998742 2355665554331 22257899999
Q ss_pred ecCcccccccC----HHHHHHHHHhcccCCcEEEEEe
Q 006834 292 CSGCLIPWYMY----DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 292 ~s~~L~h~~~d----~~~~L~el~RvLKPGG~liis~ 324 (629)
+.... +.... ...+++.+.++|+|||.+++..
T Consensus 151 ~D~~~-~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 151 VDSTD-PVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred EeCCC-CCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 85542 22211 3578899999999999999874
No 157
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.45 E-value=2e-07 Score=96.02 Aligned_cols=96 Identities=17% Similarity=0.174 Sum_probs=70.3
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----ccc---ceeccccccCCCC-Ccccceeeccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GLI---GTYQDWCEAFSTY-PRTYDLIHASGVF 552 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gli---~~~~~~~e~f~~y-p~t~Dl~H~~~~f 552 (629)
.+|||+|||.|.++..|++.+. +|+.+|.++.++..+.++ |+. .+++.-.+.+..+ +++||+|.+..++
T Consensus 46 ~~vLDiGcG~G~~a~~la~~g~---~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl 122 (255)
T PRK11036 46 LRVLDAGGGEGQTAIKLAELGH---QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVL 122 (255)
T ss_pred CEEEEeCCCchHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHH
Confidence 4799999999999999998863 566667776788877664 442 2222111223333 4899999998887
Q ss_pred cccCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 553 SIYQDRCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 553 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
.... +...+|.++.|+|||||.+++..
T Consensus 123 ~~~~---~~~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 123 EWVA---DPKSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred HhhC---CHHHHHHHHHHHcCCCeEEEEEE
Confidence 6443 44789999999999999998863
No 158
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.45 E-value=2.5e-06 Score=83.51 Aligned_cols=111 Identities=13% Similarity=0.007 Sum_probs=81.8
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C-CCeEEEEecCCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G-VPAMIGVISSKRL 280 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g-~~~~~~v~d~~~L 280 (629)
+.........|...+++ +++|||||+|+.+..++..+. ...++++|-++++++..+++ + .++.++.+++...
T Consensus 20 ~EIRal~ls~L~~~~g~--~l~DIGaGtGsi~iE~a~~~p-~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~ 96 (187)
T COG2242 20 EEIRALTLSKLRPRPGD--RLWDIGAGTGSITIEWALAGP-SGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEA 96 (187)
T ss_pred HHHHHHHHHhhCCCCCC--EEEEeCCCccHHHHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHh
Confidence 33444445556666666 999999999999999995544 33567779999999888754 2 4577777776443
Q ss_pred CCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 281 PYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 281 p~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
--...+||.|+....- ....+|+.+...|||||.+++..
T Consensus 97 L~~~~~~daiFIGGg~-----~i~~ile~~~~~l~~ggrlV~na 135 (187)
T COG2242 97 LPDLPSPDAIFIGGGG-----NIEEILEAAWERLKPGGRLVANA 135 (187)
T ss_pred hcCCCCCCEEEECCCC-----CHHHHHHHHHHHcCcCCeEEEEe
Confidence 2122279999987763 56789999999999999999974
No 159
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.44 E-value=2.4e-06 Score=89.61 Aligned_cols=97 Identities=23% Similarity=0.237 Sum_probs=70.7
Q ss_pred eEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCCCCCCCCCeeEEEecCccccc
Q 006834 225 TAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKRLPYPARAFDMAHCSGCLIPW 299 (629)
Q Consensus 225 ~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~ 299 (629)
+|||+|||+|..+..++..... ..++++|+|+.+++.|+++ +. ++.+...|... +. .++||+|+|+.-...-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~-~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~-~~-~~~fDlIVsNPPYip~ 189 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPD-AEVIAVDISPDALALARENAERNGLVRVLVVQSDLFE-PL-RGKFDLIVSNPPYIPA 189 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcC-CeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeeccc-cc-CCceeEEEeCCCCCCC
Confidence 7999999999999999998764 3567889999999999865 32 23333332211 22 3489999998766444
Q ss_pred c----------cCH--------------HHHHHHHHhcccCCcEEEEEe
Q 006834 300 Y----------MYD--------------GLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 300 ~----------~d~--------------~~~L~el~RvLKPGG~liis~ 324 (629)
. .+| ..++.++.+.|+|||.+++..
T Consensus 190 ~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~ 238 (280)
T COG2890 190 EDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEI 238 (280)
T ss_pred cccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEE
Confidence 3 011 147888999999999999974
No 160
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.42 E-value=1.5e-06 Score=91.35 Aligned_cols=101 Identities=12% Similarity=0.053 Sum_probs=74.9
Q ss_pred CCeEEEeCCCCc----hHHHHHHHcC---CcEeEEEeecCcHHHHHHHHHc--------C--------------------
Q 006834 223 IRTAVDTGCGVA----SWGAYLLKRD---ILTMSFARRDTHEAQVQFALER--------G-------------------- 267 (629)
Q Consensus 223 ~~~VLDIGCGtG----~~a~~La~~g---~~~v~i~gvDiS~~~i~~A~er--------g-------------------- 267 (629)
.-+|+..||++| +++..|.+.. ...+.|.|+|+|+.+++.|++- +
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 358999999999 4555455532 1135789999999999999842 0
Q ss_pred --------CCeEEEEecCCCCCCC-CCCeeEEEecCcccccccC-HHHHHHHHHhcccCCcEEEEE
Q 006834 268 --------VPAMIGVISSKRLPYP-ARAFDMAHCSGCLIPWYMY-DGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 268 --------~~~~~~v~d~~~Lp~p-d~sFDlV~~s~~L~h~~~d-~~~~L~el~RvLKPGG~liis 323 (629)
..+.|.+.+....+++ .+.||+|+|.++++|+... ...++..+.+.|+|||+|++-
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 0134556666554443 5789999999999888644 567999999999999988775
No 161
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.42 E-value=2.3e-06 Score=85.09 Aligned_cols=98 Identities=23% Similarity=0.344 Sum_probs=73.7
Q ss_pred eEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C-CCeEEEEecCCC-CC--CCCCCeeEEEecCcc
Q 006834 225 TAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G-VPAMIGVISSKR-LP--YPARAFDMAHCSGCL 296 (629)
Q Consensus 225 ~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g-~~~~~~v~d~~~-Lp--~pd~sFDlV~~s~~L 296 (629)
.+||||||.|.+...++...+. ..+.|+|+....+..|.++ + .++.+..+|+.. +. ++++++|.|+..+.=
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd-~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD 98 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPD-INFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPD 98 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTT-SEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred eEEEecCCCCHHHHHHHHHCCC-CCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCC
Confidence 7999999999999999998775 3678889999998887754 3 578888888776 32 567999999986644
Q ss_pred cccccC--------HHHHHHHHHhcccCCcEEEEEe
Q 006834 297 IPWYMY--------DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 297 ~h~~~d--------~~~~L~el~RvLKPGG~liis~ 324 (629)
+|+.. ...++..+.++|+|||.|.+.+
T Consensus 99 -PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 99 -PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred -CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 55532 1369999999999999999984
No 162
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.41 E-value=5.2e-07 Score=93.86 Aligned_cols=103 Identities=15% Similarity=0.250 Sum_probs=68.2
Q ss_pred eeEEEeecccchhHHhhhhCC-C-eEEEEecCCCCCCCchHHHHhhcc-cceeccccccCCCCC-cccceeecccccccc
Q 006834 480 YRNVMDMNAYLGGFAAAMSKY-P-VWVMNVVPFHSNPDTLGAIYERGL-IGTYQDWCEAFSTYP-RTYDLIHASGVFSIY 555 (629)
Q Consensus 480 ~R~vlD~~~g~Ggfaa~l~~~-~-v~~mnv~~~~~~~~~l~~~~ergl-i~~~~~~~e~f~~yp-~t~Dl~H~~~~fs~~ 555 (629)
-.+|||+|||.|.+++.|.+. + .-..+|+.+|.++.++..+.++.- +...+.-.+.+ +++ .+||+|.+ +|+
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~l-p~~~~sfD~I~~--~~~-- 160 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRL-PFADQSLDAIIR--IYA-- 160 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccC-CCcCCceeEEEE--ecC--
Confidence 356999999999999998754 1 111357788888889998887742 22222111222 344 79999986 232
Q ss_pred CCCcCHHHHHHHHhhcccCCcEEEEEeCHH-HHHHHHHH
Q 006834 556 QDRCDITNILLEMDRILRPEGTVIFRDTVE-MLVKIRSI 593 (629)
Q Consensus 556 ~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~-~~~~~~~~ 593 (629)
+..+.|+.|+|||||++|+..+.. .+..++.+
T Consensus 161 ------~~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~ 193 (272)
T PRK11088 161 ------PCKAEELARVVKPGGIVITVTPGPRHLFELKGL 193 (272)
T ss_pred ------CCCHHHHHhhccCCCEEEEEeCCCcchHHHHHH
Confidence 234689999999999999976542 23344443
No 163
>PRK03612 spermidine synthase; Provisional
Probab=98.40 E-value=2.9e-06 Score=96.33 Aligned_cols=101 Identities=16% Similarity=0.023 Sum_probs=75.8
Q ss_pred CCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc------------CCCeEEEEecCCCC-CCCCCCee
Q 006834 222 NIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER------------GVPAMIGVISSKRL-PYPARAFD 288 (629)
Q Consensus 222 ~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er------------g~~~~~~v~d~~~L-p~pd~sFD 288 (629)
++++|||+|||+|..+..++++.. +..++.+|+++++++.|+++ .+++++...|..+. ...+++||
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~-v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPD-VEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCC-cCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 356899999999999999998642 23677889999999999983 13577777776553 23357899
Q ss_pred EEEecCcccccccC-----HHHHHHHHHhcccCCcEEEEEe
Q 006834 289 MAHCSGCLIPWYMY-----DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 289 lV~~s~~L~h~~~d-----~~~~L~el~RvLKPGG~liis~ 324 (629)
+|++.... +.... ...+++.+.+.|||||.+++..
T Consensus 376 vIi~D~~~-~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 376 VIIVDLPD-PSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred EEEEeCCC-CCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 99997533 22111 2468999999999999999864
No 164
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.40 E-value=7.4e-07 Score=93.54 Aligned_cols=115 Identities=16% Similarity=0.210 Sum_probs=78.5
Q ss_pred EEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHH----HhhcccceeccccccCCC--CCcccceeecccccccc
Q 006834 482 NVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAI----YERGLIGTYQDWCEAFST--YPRTYDLIHASGVFSIY 555 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~----~ergli~~~~~~~e~f~~--yp~t~Dl~H~~~~fs~~ 555 (629)
+|||+|||.|.++.+|++++. .|..+|.++..+..+ .+.|+ . ++--+..+.. .+..||+|-+..+|...
T Consensus 123 ~vLDlGcG~G~~~~~la~~g~---~V~avD~s~~ai~~~~~~~~~~~l-~-v~~~~~D~~~~~~~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 123 KALDLGCGQGRNSLYLALLGF---DVTAVDINQQSLENLQEIAEKENL-N-IRTGLYDINSASIQEEYDFILSTVVLMFL 197 (287)
T ss_pred CEEEeCCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHHcCC-c-eEEEEechhcccccCCccEEEEcchhhhC
Confidence 599999999999999998864 566667766666654 34465 2 1111122222 36899999998877543
Q ss_pred CCCcCHHHHHHHHhhcccCCcEEEEEe---CH-----------HHHHHHHHHHhcCCCeEEEe
Q 006834 556 QDRCDITNILLEMDRILRPEGTVIFRD---TV-----------EMLVKIRSITEGMRWKSQIM 604 (629)
Q Consensus 556 ~~~c~~~~~l~e~dRiLrPgG~~i~~d---~~-----------~~~~~~~~~~~~l~w~~~~~ 604 (629)
+.-+++.++.+|.|+|+|||++++-. .. -.-..++++++. |++..+
T Consensus 198 -~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~--~~i~~~ 257 (287)
T PRK12335 198 -NRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQD--WEIVKY 257 (287)
T ss_pred -CHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCC--CEEEEE
Confidence 33467889999999999999966531 11 124567777776 887655
No 165
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.40 E-value=5.1e-06 Score=82.92 Aligned_cols=130 Identities=11% Similarity=0.063 Sum_probs=85.2
Q ss_pred CCeeeecCCCCCCCCchHHHHHHHHhhcCc-cCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc-
Q 006834 189 GHRFRFPGGGTTFPNGADAYIDNINELIPL-TGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER- 266 (629)
Q Consensus 189 g~~~~Fpgggt~f~~ga~~~i~~I~~lL~~-~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er- 266 (629)
|-++..|.+. .+....+...+.+.+.+.. ..+ .+|||+|||+|.++..++.++.. .++++|.++.+++.|+++
T Consensus 22 g~~l~~~~~~-~~Rp~~d~v~e~l~~~l~~~~~~--~~vLDl~~GsG~l~l~~lsr~a~--~V~~vE~~~~a~~~a~~Nl 96 (199)
T PRK10909 22 GRKLPVPDSP-GLRPTTDRVRETLFNWLAPVIVD--ARCLDCFAGSGALGLEALSRYAA--GATLLEMDRAVAQQLIKNL 96 (199)
T ss_pred CCEeCCCCCC-CcCcCCHHHHHHHHHHHhhhcCC--CEEEEcCCCccHHHHHHHHcCCC--EEEEEECCHHHHHHHHHHH
Confidence 3444444322 2344566666666666543 233 38999999999999877766643 567789999999988764
Q ss_pred ---CC-CeEEEEecCCC-CCCCCCCeeEEEecCcccccccCHHHHHHHHHh--cccCCcEEEEEeC
Q 006834 267 ---GV-PAMIGVISSKR-LPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDR--VLRPGGYWILSGP 325 (629)
Q Consensus 267 ---g~-~~~~~v~d~~~-Lp~pd~sFDlV~~s~~L~h~~~d~~~~L~el~R--vLKPGG~liis~P 325 (629)
+. ++.+...|... ++...++||+|++..-+.. .-....+..+.. +|+|+|.++++.+
T Consensus 97 ~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~~--g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 97 ATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPFRK--GLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred HHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCCCC--ChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 32 47777777654 2223457999999885421 113445555544 4899999999854
No 166
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.38 E-value=4.8e-05 Score=82.92 Aligned_cols=129 Identities=13% Similarity=0.116 Sum_probs=81.3
Q ss_pred eEEEeecccchhHHhhhhCCC-eEEEEecCCCCCCCchHHHHhh----cc-----cceeccccccCCCCC-cccceeecc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYP-VWVMNVVPFHSNPDTLGAIYER----GL-----IGTYQDWCEAFSTYP-RTYDLIHAS 549 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~-v~~mnv~~~~~~~~~l~~~~er----gl-----i~~~~~~~e~f~~yp-~t~Dl~H~~ 549 (629)
..|||+|||+|-.+.+|+++. - ..|..+|.+...+..+.+. +. +.++ +...++..+ .+||+|-|+
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P~--~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~--~~D~l~~~~~~~fDlIlsN 305 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNPQ--AKVVFVDESPMAVASSRLNVETNMPEALDRCEFM--INNALSGVEPFRFNAVLCN 305 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCcccCceEEEE--EccccccCCCCCEEEEEEC
Confidence 369999999999999998752 1 2344455554566555432 11 2223 233445454 589999987
Q ss_pred ccccccC--CCcCHHHHHHHHhhcccCCcEEEEEe--CHHHHHHHHHHHhcCCCeEEEeecCCCCCCCceEEEEEe
Q 006834 550 GVFSIYQ--DRCDITNILLEMDRILRPEGTVIFRD--TVEMLVKIRSITEGMRWKSQIMDHESGPFNPEKILFAAK 621 (629)
Q Consensus 550 ~~fs~~~--~~c~~~~~l~e~dRiLrPgG~~i~~d--~~~~~~~~~~~~~~l~w~~~~~~~e~~~~~~e~~l~~~K 621 (629)
--|-..+ ..-....++.++-|+|+|||.++|-- ..++..+|+++.. ++.++... .+-+||-++|
T Consensus 306 PPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~~~L~~~fg----~~~~va~~----~kf~vl~a~k 373 (378)
T PRK15001 306 PPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFG----NCTTIATN----NKFVVLKAVK 373 (378)
T ss_pred cCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEecCcCHHHHHHHHcC----CceEEccC----CCEEEEEEEe
Confidence 6664322 11123568889999999999999963 2345667777654 33443322 3678888888
No 167
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.38 E-value=2.4e-06 Score=84.64 Aligned_cols=150 Identities=16% Similarity=0.202 Sum_probs=88.8
Q ss_pred CCcchhhchh--hHHHHHHHHHHHHHhhcccCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh-
Q 006834 447 SGITAEKLRE--DNELWKDRMTYYKKIDGLFHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER- 523 (629)
Q Consensus 447 ~~~~~~~f~~--d~~~w~~~v~~y~~~~~~~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er- 523 (629)
+|+..+.|.. +...|+..+..-.-..-.+..+. .|||+|||.|.++.+++..---..+|+.+|.++.+++.+.++
T Consensus 8 ~~~~d~~~~~~~~~~~t~~~~r~~~l~~l~~~~~~--~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~ 85 (198)
T PRK00377 8 PGIPDEEFERDEEIPMTKEEIRALALSKLRLRKGD--MILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNA 85 (198)
T ss_pred CCCChHHHccCCCCCCCHHHHHHHHHHHcCCCCcC--EEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH
Confidence 4555666765 33577766643221001244444 599999999999887654200012345556655566654433
Q ss_pred ---cc---cceec-cccccCCCCCcccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEE-eCHHHHHHHHHHHh
Q 006834 524 ---GL---IGTYQ-DWCEAFSTYPRTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFR-DTVEMLVKIRSITE 595 (629)
Q Consensus 524 ---gl---i~~~~-~~~e~f~~yp~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~-d~~~~~~~~~~~~~ 595 (629)
|+ +.++. |..+.....+..||++.+.+ ....++.+|.++.|+|+|||.+++. -..+.+.++...++
T Consensus 86 ~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~------~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~ 159 (198)
T PRK00377 86 EKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG------GSEKLKEIISASWEIIKKGGRIVIDAILLETVNNALSALE 159 (198)
T ss_pred HHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC------CcccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHH
Confidence 43 22222 22222223346799877632 2246788999999999999999983 34556777777777
Q ss_pred cCCCeEEEe
Q 006834 596 GMRWKSQIM 604 (629)
Q Consensus 596 ~l~w~~~~~ 604 (629)
.+.++..+.
T Consensus 160 ~~g~~~~~~ 168 (198)
T PRK00377 160 NIGFNLEIT 168 (198)
T ss_pred HcCCCeEEE
Confidence 776665533
No 168
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.37 E-value=2.8e-06 Score=94.55 Aligned_cols=112 Identities=17% Similarity=0.196 Sum_probs=80.6
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCC-
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKR- 279 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~- 279 (629)
+.+.+.+.+.+...++. +|||+|||+|.++..|++.+. .++++|+|++|++.|+++ +. ++.+..+|...
T Consensus 283 e~l~~~vl~~l~~~~~~--~VLDlgcGtG~~sl~la~~~~---~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~ 357 (443)
T PRK13168 283 QKMVARALEWLDPQPGD--RVLDLFCGLGNFTLPLARQAA---EVVGVEGVEAMVERARENARRNGLDNVTFYHANLEED 357 (443)
T ss_pred HHHHHHHHHHhcCCCCC--EEEEEeccCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHh
Confidence 45566666666544444 899999999999999998864 456779999999999864 32 57888888653
Q ss_pred ---CCCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeCCC
Q 006834 280 ---LPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPPI 327 (629)
Q Consensus 280 ---Lp~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P~~ 327 (629)
+++.+++||+|++...... ....+..+.+ ++|++.++++-.+.
T Consensus 358 l~~~~~~~~~fD~Vi~dPPr~g----~~~~~~~l~~-~~~~~ivyvSCnp~ 403 (443)
T PRK13168 358 FTDQPWALGGFDKVLLDPPRAG----AAEVMQALAK-LGPKRIVYVSCNPA 403 (443)
T ss_pred hhhhhhhcCCCCEEEECcCCcC----hHHHHHHHHh-cCCCeEEEEEeChH
Confidence 3355678999998664321 2345555555 69999999985443
No 169
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.37 E-value=6.5e-07 Score=95.66 Aligned_cols=95 Identities=19% Similarity=0.174 Sum_probs=63.6
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHH--HHhhcc-----cceeccccccCCCCCcccceeecccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGA--IYERGL-----IGTYQDWCEAFSTYPRTYDLIHASGVFS 553 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~--~~ergl-----i~~~~~~~e~f~~yp~t~Dl~H~~~~fs 553 (629)
+.|||+|||.|.++.+|++.+- -.|+.+|.+..++.. +..+.+ |-+...=.+.++. +.+||+|+|.+++.
T Consensus 124 ~~VLDIGCG~G~~~~~la~~g~--~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~ 200 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGAGA--KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVLY 200 (322)
T ss_pred CEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChhh
Confidence 5699999999999999988742 124555655344422 111211 2222211133333 68999999988764
Q ss_pred ccCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006834 554 IYQDRCDITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 554 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
+.-+...+|.++.|+|||||.+||.
T Consensus 201 ---H~~dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 201 ---HRRSPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred ---ccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 3456788999999999999999986
No 170
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.36 E-value=5e-07 Score=89.68 Aligned_cols=94 Identities=19% Similarity=0.345 Sum_probs=65.4
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHH----hhcc--ccee-ccccccCCCCCcccceeecccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIY----ERGL--IGTY-QDWCEAFSTYPRTYDLIHASGVFS 553 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~----ergl--i~~~-~~~~e~f~~yp~t~Dl~H~~~~fs 553 (629)
.+|||+|||.|.++.+|++++. +|..+|.++.+++.+. ++|+ +-.. .|+.+ + +++.+||+|-+..+|-
T Consensus 32 ~~vLDiGcG~G~~a~~La~~g~---~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~-~-~~~~~fD~I~~~~~~~ 106 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAANGF---DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNN-L-TFDGEYDFILSTVVLM 106 (197)
T ss_pred CcEEEECCCCCHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhh-C-CcCCCcCEEEEecchh
Confidence 3599999999999999998853 5566677656665543 3454 2222 23321 2 2357899999877764
Q ss_pred ccCCCcCHHHHHHHHhhcccCCcEEEE
Q 006834 554 IYQDRCDITNILLEMDRILRPEGTVIF 580 (629)
Q Consensus 554 ~~~~~c~~~~~l~e~dRiLrPgG~~i~ 580 (629)
.. +..+++.++.+|.|+|||||++++
T Consensus 107 ~~-~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 107 FL-EAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred hC-CHHHHHHHHHHHHHHcCCCcEEEE
Confidence 32 334578899999999999999655
No 171
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.36 E-value=5.8e-05 Score=81.43 Aligned_cols=130 Identities=15% Similarity=0.146 Sum_probs=80.7
Q ss_pred EEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHh----hcccceeccccccCCCCCcccceeecccccccc-
Q 006834 482 NVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYE----RGLIGTYQDWCEAFSTYPRTYDLIHASGVFSIY- 555 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~e----rgli~~~~~~~e~f~~yp~t~Dl~H~~~~fs~~- 555 (629)
.|||+|||+|.++.+|.++ +- ..|..+|.+...+..+.+ .|+-+.++ +...++..+..||+|-++--|-..
T Consensus 199 ~VLDlGCG~G~ls~~la~~~p~--~~v~~vDis~~Al~~A~~nl~~n~l~~~~~-~~D~~~~~~~~fDlIvsNPPFH~g~ 275 (342)
T PRK09489 199 KVLDVGCGAGVLSAVLARHSPK--IRLTLSDVSAAALESSRATLAANGLEGEVF-ASNVFSDIKGRFDMIISNPPFHDGI 275 (342)
T ss_pred eEEEeccCcCHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCEEE-EcccccccCCCccEEEECCCccCCc
Confidence 4999999999999999876 21 124445555455554432 34433222 333445456899999997766321
Q ss_pred -CCCcCHHHHHHHHhhcccCCcEEEEEeCH--HHHHHHHHHHhcCCCeEEEeecCCCCCCCceEEEEEec
Q 006834 556 -QDRCDITNILLEMDRILRPEGTVIFRDTV--EMLVKIRSITEGMRWKSQIMDHESGPFNPEKILFAAKT 622 (629)
Q Consensus 556 -~~~c~~~~~l~e~dRiLrPgG~~i~~d~~--~~~~~~~~~~~~l~w~~~~~~~e~~~~~~e~~l~~~K~ 622 (629)
...-..+.++.++-|.|+|||.++|-.+. .+-..+++..... ++ +.++ .+-||+-|+|.
T Consensus 276 ~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~l~~~Fg~~--~~-la~~-----~~f~v~~a~~~ 337 (342)
T PRK09489 276 QTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDLLDETFGSH--EV-LAQT-----GRFKVYRAIMT 337 (342)
T ss_pred cccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChHHHHHHHcCCe--EE-EEeC-----CCEEEEEEEcc
Confidence 11234577999999999999999886432 2344555555432 22 2222 36788888874
No 172
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.36 E-value=1.1e-06 Score=86.32 Aligned_cols=133 Identities=17% Similarity=0.259 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHhhcccCCCCeeEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHH----hhcc--cceecc
Q 006834 459 ELWKDRMTYYKKIDGLFHKGRYRNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIY----ERGL--IGTYQD 531 (629)
Q Consensus 459 ~~w~~~v~~y~~~~~~~~~~~~R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~----ergl--i~~~~~ 531 (629)
..|++++-.-..++..+. + .+|||+|||+|.++..|+.. +- ..|..+|.++.++..+. +.|+ +.+++.
T Consensus 25 ~~~~~~~~d~i~~~~~~~-~--~~vLDiGcGtG~~s~~la~~~~~--~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~ 99 (181)
T TIGR00138 25 EIWERHILDSLKLLEYLD-G--KKVIDIGSGAGFPGIPLAIARPE--LKLTLLESNHKKVAFLREVKAELGLNNVEIVNG 99 (181)
T ss_pred HHHHHHHHHHHHHHHhcC-C--CeEEEecCCCCccHHHHHHHCCC--CeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEec
Confidence 466766644333333343 3 46999999999888877532 11 23555566655555443 3455 344441
Q ss_pred ccccCCCCCcccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCC-CeEEEe
Q 006834 532 WCEAFSTYPRTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTVEMLVKIRSITEGMR-WKSQIM 604 (629)
Q Consensus 532 ~~e~f~~yp~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~l~-w~~~~~ 604 (629)
=.+.+ ....+||+|-+++ -.+++.++.++.|+|||||.+++.+.......+..+.++++ |.....
T Consensus 100 d~~~~-~~~~~fD~I~s~~-------~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~~ 165 (181)
T TIGR00138 100 RAEDF-QHEEQFDVITSRA-------LASLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEPL 165 (181)
T ss_pred chhhc-cccCCccEEEehh-------hhCHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceEe
Confidence 11222 2347999998854 13578899999999999999999887776777777766533 444433
No 173
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.36 E-value=5.2e-07 Score=89.37 Aligned_cols=117 Identities=19% Similarity=0.292 Sum_probs=76.6
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHH----hhccc-cee-ccccccCCCCCcccceeeccccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIY----ERGLI-GTY-QDWCEAFSTYPRTYDLIHASGVFSI 554 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~----ergli-~~~-~~~~e~f~~yp~t~Dl~H~~~~fs~ 554 (629)
.+|||+|||+|.++.+|++++- .|..+|.++.++..+. +.|+- ... .|. .. ..++.+||+|.+..+|..
T Consensus 32 ~~vLDiGcG~G~~a~~la~~g~---~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~-~~-~~~~~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLYLSLAGY---DVRAWDHNPASIASVLDMKARENLPLRTDAYDI-NA-AALNEDYDFIFSTVVFMF 106 (195)
T ss_pred CcEEEeCCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHHhCCCceeEeccc-hh-ccccCCCCEEEEeccccc
Confidence 3699999999999999998753 5666777767777654 33541 111 121 11 124578999998777753
Q ss_pred cCCCcCHHHHHHHHhhcccCCcEEEEEeC-----------HH---HHHHHHHHHhcCCCeEEEee
Q 006834 555 YQDRCDITNILLEMDRILRPEGTVIFRDT-----------VE---MLVKIRSITEGMRWKSQIMD 605 (629)
Q Consensus 555 ~~~~c~~~~~l~e~dRiLrPgG~~i~~d~-----------~~---~~~~~~~~~~~l~w~~~~~~ 605 (629)
. +.-+++.++.++.|+|+|||++++-+. .. ....|.+.+.. |+...++
T Consensus 107 ~-~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~~--~~~~~~~ 168 (195)
T TIGR00477 107 L-QAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYAD--WELLKYN 168 (195)
T ss_pred C-CHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhCC--CeEEEee
Confidence 3 233678899999999999999554310 11 24556666654 7766554
No 174
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.35 E-value=1.8e-06 Score=86.99 Aligned_cols=98 Identities=16% Similarity=0.272 Sum_probs=64.1
Q ss_pred eEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhh----cc--cceeccccccCCCCC-cccceeeccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYER----GL--IGTYQDWCEAFSTYP-RTYDLIHASGVF 552 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~er----gl--i~~~~~~~e~f~~yp-~t~Dl~H~~~~f 552 (629)
.+|||+|||.|.++..|++. +- ..+|+.+|.+++++..+.++ ++ +.+++.=.+.+ ++| .+||+|++...+
T Consensus 47 ~~vLDiGcG~G~~~~~la~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~V~~~~~l 124 (231)
T TIGR02752 47 TSALDVCCGTADWSIALAEAVGP-EGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMEL-PFDDNSFDYVTIGFGL 124 (231)
T ss_pred CEEEEeCCCcCHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcC-CCCCCCccEEEEeccc
Confidence 36999999999999998764 10 01344455555666655543 33 22232111222 245 799999987655
Q ss_pred cccCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 553 SIYQDRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 553 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
.... +...+|.|+-|+|||||.+++.+.
T Consensus 125 ~~~~---~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 125 RNVP---DYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred ccCC---CHHHHHHHHHHHcCcCeEEEEEEC
Confidence 4332 457899999999999999998753
No 175
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.35 E-value=3e-06 Score=83.09 Aligned_cols=133 Identities=24% Similarity=0.223 Sum_probs=85.3
Q ss_pred eeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHh----hcc--cceeccccccCCCCCcccceeecccccc
Q 006834 480 YRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYE----RGL--IGTYQDWCEAFSTYPRTYDLIHASGVFS 553 (629)
Q Consensus 480 ~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----rgl--i~~~~~~~e~f~~yp~t~Dl~H~~~~fs 553 (629)
-.+|||+|||.|.++.++++..- -.+|..+|.++.+++.+.+ .|+ +-++. ......++..||++.+.+..
T Consensus 32 ~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~--~d~~~~~~~~~D~v~~~~~~- 107 (187)
T PRK08287 32 AKHLIDVGAGTGSVSIEAALQFP-SLQVTAIERNPDALRLIKENRQRFGCGNIDIIP--GEAPIELPGKADAIFIGGSG- 107 (187)
T ss_pred CCEEEEECCcCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEe--cCchhhcCcCCCEEEECCCc-
Confidence 34699999999999998876410 1234455555456655543 233 22222 11223456789999885532
Q ss_pred ccCCCcCHHHHHHHHhhcccCCcEEEEEe-CHHHHHHHHHHHhcCCCeE-EEee------------cCCCCCCCceEEEE
Q 006834 554 IYQDRCDITNILLEMDRILRPEGTVIFRD-TVEMLVKIRSITEGMRWKS-QIMD------------HESGPFNPEKILFA 619 (629)
Q Consensus 554 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~d-~~~~~~~~~~~~~~l~w~~-~~~~------------~e~~~~~~e~~l~~ 619 (629)
..++.++.++.|+|+|||.+++.+ ..+...++.++++...+.. .+.. +--+|..|--++++
T Consensus 108 -----~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (187)
T PRK08287 108 -----GNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSELDCVQLQVSSLTPLGAGHYFKPNNPTFIISC 182 (187)
T ss_pred -----cCHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCcceEEEEEEEeeeEcCcceeeccCCCEEEEEE
Confidence 357889999999999999999976 4556677778888877753 2111 11345566667777
Q ss_pred Ee
Q 006834 620 AK 621 (629)
Q Consensus 620 ~K 621 (629)
+|
T Consensus 183 ~~ 184 (187)
T PRK08287 183 QK 184 (187)
T ss_pred Ec
Confidence 77
No 176
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.34 E-value=2.3e-06 Score=83.34 Aligned_cols=132 Identities=17% Similarity=0.167 Sum_probs=87.5
Q ss_pred EEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc-cceec-cccccCCCCCcccceeecccccccc
Q 006834 482 NVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL-IGTYQ-DWCEAFSTYPRTYDLIHASGVFSIY 555 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl-i~~~~-~~~e~f~~yp~t~Dl~H~~~~fs~~ 555 (629)
.|||+|||+|.++..|.+.+- .|+.+|.++.++..+.++ |+ +.+++ |+.+ ..+.+||+|-++--|-..
T Consensus 22 ~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~---~~~~~fD~Vi~n~p~~~~ 95 (179)
T TIGR00537 22 DVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFK---GVRGKFDVILFNPPYLPL 95 (179)
T ss_pred eEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccc---ccCCcccEEEECCCCCCC
Confidence 599999999999999988754 456666665666665443 22 22232 3333 235799998876554211
Q ss_pred C------------------CCcCHHHHHHHHhhcccCCcEEEEEeCHHH-HHHHHHHHhcCCCeEEEeecCCCCCCCceE
Q 006834 556 Q------------------DRCDITNILLEMDRILRPEGTVIFRDTVEM-LVKIRSITEGMRWKSQIMDHESGPFNPEKI 616 (629)
Q Consensus 556 ~------------------~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~-~~~~~~~~~~l~w~~~~~~~e~~~~~~e~~ 616 (629)
. .+..++.+|.++.|+|+|||.+++.+.... ...+.+.++...++.++.....= +-.-
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~---~~~~ 172 (179)
T TIGR00537 96 EDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIVAERGL---FFEE 172 (179)
T ss_pred cchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEEEEeec---CceE
Confidence 1 122367799999999999999999876554 66777888888888876644321 3345
Q ss_pred EEEEec
Q 006834 617 LFAAKT 622 (629)
Q Consensus 617 l~~~K~ 622 (629)
|++.|-
T Consensus 173 ~~~~~~ 178 (179)
T TIGR00537 173 LFAIKA 178 (179)
T ss_pred EEEEEe
Confidence 555553
No 177
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.34 E-value=2.4e-06 Score=86.82 Aligned_cols=98 Identities=18% Similarity=0.221 Sum_probs=79.9
Q ss_pred eEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHH----cCC-CeEEEEecCCCCC---CCCCCeeEEEecCcc
Q 006834 225 TAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALE----RGV-PAMIGVISSKRLP---YPARAFDMAHCSGCL 296 (629)
Q Consensus 225 ~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~e----rg~-~~~~~v~d~~~Lp---~pd~sFDlV~~s~~L 296 (629)
.+||||||.|.+...+|++++.. .+.|+|+....+..|.+ .++ ++.+...|+..+- +++++.|-|+..+.=
T Consensus 51 i~lEIGfG~G~~l~~~A~~nP~~-nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 51 IVLEIGFGMGEFLVEMAKKNPEK-NFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred EEEEECCCCCHHHHHHHHHCCCC-CEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 79999999999999999999865 78888999888777764 477 8888888875542 456699999987754
Q ss_pred cccccCH--------HHHHHHHHhcccCCcEEEEEe
Q 006834 297 IPWYMYD--------GLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 297 ~h~~~d~--------~~~L~el~RvLKPGG~liis~ 324 (629)
+|+... ..++..+.++|+|||.|.+.+
T Consensus 130 -PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 130 -PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred -CCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 776432 369999999999999999984
No 178
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.32 E-value=2.7e-06 Score=86.91 Aligned_cols=97 Identities=12% Similarity=0.026 Sum_probs=71.0
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC--CeEEEEecCCCC-C-----CCCCCeeEE
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV--PAMIGVISSKRL-P-----YPARAFDMA 290 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~~~L-p-----~pd~sFDlV 290 (629)
.++|||+|||+|..+..|+..-.....++++|+++++++.|+++ +. .+.+..+|.... + .+.++||+|
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~V 148 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFA 148 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEE
Confidence 34899999999998888877533233567789999999999865 32 467777776442 2 124689999
Q ss_pred EecCcccccccCHHHHHHHHHhcccCCcEEEEE
Q 006834 291 HCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 291 ~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis 323 (629)
++..- ......++.++.++|||||.+++.
T Consensus 149 fiDa~----k~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 149 FVDAD----KPNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred EECCC----HHHHHHHHHHHHHhcCCCeEEEEE
Confidence 87431 123356899999999999998886
No 179
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.32 E-value=9.1e-07 Score=96.67 Aligned_cols=100 Identities=20% Similarity=0.300 Sum_probs=71.3
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhhc--ccceeccccccCCCCCcccceeecccc
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYERG--LIGTYQDWCEAFSTYPRTYDLIHASGV 551 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~erg--li~~~~~~~e~f~~yp~t~Dl~H~~~~ 551 (629)
+.++. .|||+|||.|+++..|++. ++ .|+.+|.++.++..+.+|. + . .+-.+..+...+.+||+|.+.++
T Consensus 165 l~~g~--rVLDIGcG~G~~a~~la~~~g~---~V~giDlS~~~l~~A~~~~~~l-~-v~~~~~D~~~l~~~fD~Ivs~~~ 237 (383)
T PRK11705 165 LKPGM--RVLDIGCGWGGLARYAAEHYGV---SVVGVTISAEQQKLAQERCAGL-P-VEIRLQDYRDLNGQFDRIVSVGM 237 (383)
T ss_pred CCCCC--EEEEeCCCccHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHhccC-e-EEEEECchhhcCCCCCEEEEeCc
Confidence 44554 5999999999999999875 54 4566666667888887764 2 1 11112233334689999999887
Q ss_pred ccccCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 552 FSIYQDRCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 552 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
|..-. .-+.+.++.++.|+|||||.+++.+
T Consensus 238 ~ehvg-~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 238 FEHVG-PKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred hhhCC-hHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 75432 2356789999999999999999963
No 180
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.32 E-value=1.3e-06 Score=92.88 Aligned_cols=96 Identities=16% Similarity=0.106 Sum_probs=63.2
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHH-Hhhccc---ceeccccccCCCCC--cccceeeccccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAI-YERGLI---GTYQDWCEAFSTYP--RTYDLIHASGVFSI 554 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~-~ergli---~~~~~~~e~f~~yp--~t~Dl~H~~~~fs~ 554 (629)
+.|||+|||.|.++.+|+..+. -.|+.+|.+..++... ..|.++ +-.+-....+...| .+||+|-|.+++-.
T Consensus 123 ~~VLDvGCG~G~~~~~~~~~g~--~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~FD~V~s~gvL~H 200 (314)
T TIGR00452 123 RTILDVGCGSGYHMWRMLGHGA--KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAFDTVFSMGVLYH 200 (314)
T ss_pred CEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCcCEEEEcchhhc
Confidence 5799999999999999887754 1355666554454321 111111 11111112222333 58999999887643
Q ss_pred cCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006834 555 YQDRCDITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 555 ~~~~c~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
+-+...+|.|+.|+|||||.+|+.
T Consensus 201 ---~~dp~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 201 ---RKSPLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred ---cCCHHHHHHHHHHhcCCCCEEEEE
Confidence 456789999999999999999986
No 181
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.31 E-value=6.1e-07 Score=90.05 Aligned_cols=94 Identities=21% Similarity=0.381 Sum_probs=66.2
Q ss_pred EEEeecccchhHHhhhhCC--CeEEEEecCCCCCCCchHHHHh----hcc---cceec-cccccCCCCCcccceeecccc
Q 006834 482 NVMDMNAYLGGFAAAMSKY--PVWVMNVVPFHSNPDTLGAIYE----RGL---IGTYQ-DWCEAFSTYPRTYDLIHASGV 551 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~e----rgl---i~~~~-~~~e~f~~yp~t~Dl~H~~~~ 551 (629)
.|||+|||.|+++..+++. ++ +|..++.+++++..+.+ .|+ +.++. |..+. ++|.+||+|++.++
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~---~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~--~~~~~fD~I~~~~~ 76 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHL---QLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD--PFPDTYDLVFGFEV 76 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC--CCCCCCCEeehHHH
Confidence 5999999999999998764 22 33444445566665555 355 33333 22111 35689999999777
Q ss_pred ccccCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 552 FSIYQDRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 552 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
|.... +.+.+|.++.|+|||||++++.+.
T Consensus 77 l~~~~---~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 77 IHHIK---DKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred HHhCC---CHHHHHHHHHHHcCCCCEEEEEEc
Confidence 76543 468899999999999999999864
No 182
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.31 E-value=2.7e-06 Score=85.88 Aligned_cols=101 Identities=19% Similarity=0.220 Sum_probs=69.2
Q ss_pred CCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCC---C----eE-----------------------
Q 006834 222 NIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGV---P----AM----------------------- 271 (629)
Q Consensus 222 ~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~---~----~~----------------------- 271 (629)
.+..+|||||..|.++..+++..-. -.+.|+|+++..|+.|++... . +.
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~-r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGP-RRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhcc-ceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence 3558999999999999999986421 246788999999999996521 0 00
Q ss_pred ----------E----EEecC-CCCCCCCCCeeEEEecC----cccccccC-HHHHHHHHHhcccCCcEEEEE
Q 006834 272 ----------I----GVISS-KRLPYPARAFDMAHCSG----CLIPWYMY-DGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 272 ----------~----~v~d~-~~Lp~pd~sFDlV~~s~----~L~h~~~d-~~~~L~el~RvLKPGG~liis 323 (629)
| .+.+. .-+.+....||+|+|.. +...|.++ ...+++.+.++|.|||+|++.
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 0 01111 11223456899999833 22344423 356999999999999999998
No 183
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.28 E-value=5.2e-07 Score=90.27 Aligned_cols=145 Identities=18% Similarity=0.245 Sum_probs=104.9
Q ss_pred hcccCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcccceec-cccccCC--CCCcccceeec
Q 006834 472 DGLFHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGLIGTYQ-DWCEAFS--TYPRTYDLIHA 548 (629)
Q Consensus 472 ~~~~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergli~~~~-~~~e~f~--~yp~t~Dl~H~ 548 (629)
+.....+..|.+||+|||+|-+|-+|.+. +--+..+|-+.|||..+.|+|+.-++. .=-..|. .=++-||||-+
T Consensus 118 I~~~~~g~F~~~lDLGCGTGL~G~~lR~~---a~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~A 194 (287)
T COG4976 118 IGKADLGPFRRMLDLGCGTGLTGEALRDM---ADRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVA 194 (287)
T ss_pred HHhccCCccceeeecccCcCcccHhHHHH---HhhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhh
Confidence 34456677999999999999999999765 123456688889999999999966432 1112365 45689999999
Q ss_pred cccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCH----------------HHHHHHHHHHhcCCCeEEEe-----ecC
Q 006834 549 SGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTV----------------EMLVKIRSITEGMRWKSQIM-----DHE 607 (629)
Q Consensus 549 ~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~----------------~~~~~~~~~~~~l~w~~~~~-----~~e 607 (629)
.-||.... +++.+|.=+++.|.|||.|+|+... -....|...+.+--.+++-+ -.+
T Consensus 195 aDVl~YlG---~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~ttiR~d 271 (287)
T COG4976 195 ADVLPYLG---ALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIEDTTIRRD 271 (287)
T ss_pred hhHHHhhc---chhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeecccchhh
Confidence 88888654 5699999999999999999998221 01455777777777776522 223
Q ss_pred CCCCCCceEEEEEec
Q 006834 608 SGPFNPEKILFAAKT 622 (629)
Q Consensus 608 ~~~~~~e~~l~~~K~ 622 (629)
.|.-.+..+.|++|+
T Consensus 272 ~g~pv~G~L~iark~ 286 (287)
T COG4976 272 AGEPVPGILVIARKK 286 (287)
T ss_pred cCCCCCCceEEEecC
Confidence 344466777788775
No 184
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.27 E-value=7.1e-07 Score=95.26 Aligned_cols=96 Identities=10% Similarity=0.159 Sum_probs=70.8
Q ss_pred EEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhc----c---cceeccccccCCCCCcccceeeccccccc
Q 006834 482 NVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERG----L---IGTYQDWCEAFSTYPRTYDLIHASGVFSI 554 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~erg----l---i~~~~~~~e~f~~yp~t~Dl~H~~~~fs~ 554 (629)
.|||+|||.|.++..|++.+. +|..+|.+..++.++.++. + |...+.=.+.+...+++||+|=|.+++..
T Consensus 134 ~ILDIGCG~G~~s~~La~~g~---~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeH 210 (322)
T PLN02396 134 KFIDIGCGGGLLSEPLARMGA---TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEH 210 (322)
T ss_pred EEEEeeCCCCHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHh
Confidence 699999999999999987753 5677788778888887652 2 22222112333333379999988777654
Q ss_pred cCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 555 YQDRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 555 ~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
.. +.+.+|.|+-|+|||||.++|.+.
T Consensus 211 v~---d~~~~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 211 VA---NPAEFCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred cC---CHHHHHHHHHHHcCCCcEEEEEEC
Confidence 33 568999999999999999999853
No 185
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.26 E-value=7.1e-06 Score=85.31 Aligned_cols=102 Identities=19% Similarity=0.185 Sum_probs=76.6
Q ss_pred CCCeEEEeCCCCc----hHHHHHHHcCC----cEeEEEeecCcHHHHHHHHH---------cCC----------------
Q 006834 222 NIRTAVDTGCGVA----SWGAYLLKRDI----LTMSFARRDTHEAQVQFALE---------RGV---------------- 268 (629)
Q Consensus 222 ~~~~VLDIGCGtG----~~a~~La~~g~----~~v~i~gvDiS~~~i~~A~e---------rg~---------------- 268 (629)
..-+|.-+||++| +++..|.+.+. ..+.|.++|++...++.|++ ++.
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 4568999999999 66666666654 26789999999999999972 111
Q ss_pred ---------CeEEEEecCCCCCCCCCCeeEEEecCcccccccC-HHHHHHHHHhcccCCcEEEEE
Q 006834 269 ---------PAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMY-DGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 269 ---------~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d-~~~~L~el~RvLKPGG~liis 323 (629)
.+.|...+...-++..+.||+|+|-++|+.+... ...++..++..|+|||+|++-
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 1334444443333245679999999999888754 457999999999999999985
No 186
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.26 E-value=1.6e-06 Score=89.04 Aligned_cols=124 Identities=17% Similarity=0.197 Sum_probs=79.4
Q ss_pred hcccCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcc-cceeccccccCCC--CCcccceeec
Q 006834 472 DGLFHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGL-IGTYQDWCEAFST--YPRTYDLIHA 548 (629)
Q Consensus 472 ~~~~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergl-i~~~~~~~e~f~~--yp~t~Dl~H~ 548 (629)
+..+....-.+|||+|||.|.++..|++.. =.-+|+.+|.++.++..+.++-- +.+.. ..+.. .+.+||+|++
T Consensus 24 l~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~~~~~~~~---~d~~~~~~~~~fD~v~~ 99 (258)
T PRK01683 24 LARVPLENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRLPDCQFVE---ADIASWQPPQALDLIFA 99 (258)
T ss_pred HhhCCCcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhCCCCeEEE---CchhccCCCCCccEEEE
Confidence 333333344679999999999999998651 01345666776678877766621 22222 12222 2379999999
Q ss_pred cccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCH----HHHHHHHHHHhcCCCeEE
Q 006834 549 SGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTV----EMLVKIRSITEGMRWKSQ 602 (629)
Q Consensus 549 ~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~----~~~~~~~~~~~~l~w~~~ 602 (629)
+.+|.... +...+|.++-|+|||||.+++.-.. .....++++.....|...
T Consensus 100 ~~~l~~~~---d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 154 (258)
T PRK01683 100 NASLQWLP---DHLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQN 154 (258)
T ss_pred ccChhhCC---CHHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHHH
Confidence 87775433 4678999999999999999996321 122334555555556543
No 187
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.24 E-value=2.7e-06 Score=84.00 Aligned_cols=140 Identities=19% Similarity=0.286 Sum_probs=90.9
Q ss_pred ccCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcc----cceeccccccCCC-CC-cccceee
Q 006834 474 LFHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGL----IGTYQDWCEAFST-YP-RTYDLIH 547 (629)
Q Consensus 474 ~~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergl----i~~~~~~~e~f~~-yp-~t~Dl~H 547 (629)
.|...++++++++|||.|-|-+.|+.+ +-.++.+|.++.-+..+.+|=- |...+ ..++. .| .+|||||
T Consensus 38 aLp~~ry~~alEvGCs~G~lT~~LA~r---Cd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~---~dvp~~~P~~~FDLIV 111 (201)
T PF05401_consen 38 ALPRRRYRRALEVGCSIGVLTERLAPR---CDRLLAVDISPRALARARERLAGLPHVEWIQ---ADVPEFWPEGRFDLIV 111 (201)
T ss_dssp HHTTSSEEEEEEE--TTSHHHHHHGGG---EEEEEEEES-HHHHHHHHHHTTT-SSEEEEE---S-TTT---SS-EEEEE
T ss_pred hcCccccceeEecCCCccHHHHHHHHh---hCceEEEeCCHHHHHHHHHhcCCCCCeEEEE---CcCCCCCCCCCeeEEE
Confidence 478899999999999999999999988 2344455555456666666532 22222 22222 35 9999999
Q ss_pred ccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCHH----------HHHHHHHHHhcCCCeEEEeecCCCCCCCceEE
Q 006834 548 ASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTVE----------MLVKIRSITEGMRWKSQIMDHESGPFNPEKIL 617 (629)
Q Consensus 548 ~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~----------~~~~~~~~~~~l~w~~~~~~~e~~~~~~e~~l 617 (629)
+..|+-...+.-++..++..+...|+|||.+|+-+-.+ --+.|.++++..-=++.-+.-..+ ...|.-|
T Consensus 112 ~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~~~~~~~~~-~~~~~~~ 190 (201)
T PF05401_consen 112 LSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLTEVERVECRGG-SPNEDCL 190 (201)
T ss_dssp EES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEEEEEEEEE-S-STTSEEE
T ss_pred EehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhhheeEEEEcCC-CCCCceE
Confidence 99999888877778889999999999999999964332 145566666665555554433322 2456666
Q ss_pred EEE
Q 006834 618 FAA 620 (629)
Q Consensus 618 ~~~ 620 (629)
+++
T Consensus 191 ~~~ 193 (201)
T PF05401_consen 191 LAR 193 (201)
T ss_dssp EEE
T ss_pred eee
Confidence 654
No 188
>PRK08317 hypothetical protein; Provisional
Probab=98.21 E-value=2.3e-06 Score=85.57 Aligned_cols=99 Identities=24% Similarity=0.304 Sum_probs=67.5
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh--cccceeccccccCC--CCC-cccceeecccccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER--GLIGTYQDWCEAFS--TYP-RTYDLIHASGVFSIY 555 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er--gli~~~~~~~e~f~--~yp-~t~Dl~H~~~~fs~~ 555 (629)
.+|||+|||.|.++..+++.--=.-+++.+|.++..+..+.++ +.....+-.+..+. .++ .+||+||+..+|...
T Consensus 21 ~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~ 100 (241)
T PRK08317 21 DRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDRVLQHL 100 (241)
T ss_pred CEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEechhhcc
Confidence 4699999999999999876510012455566666778888776 22111111112222 233 799999998877654
Q ss_pred CCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 556 QDRCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 556 ~~~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
. +.+.++.++-|+|||||++++.+
T Consensus 101 ~---~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 101 E---DPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred C---CHHHHHHHHHHHhcCCcEEEEEe
Confidence 4 46889999999999999999865
No 189
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.21 E-value=1e-06 Score=89.65 Aligned_cols=99 Identities=9% Similarity=0.145 Sum_probs=68.4
Q ss_pred eEEEeecccchhHHhhhhCCCeE-EEEecCCCCCCCchHHHHhh----cc---cceeccccccCCCCC-cccceeecccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVW-VMNVVPFHSNPDTLGAIYER----GL---IGTYQDWCEAFSTYP-RTYDLIHASGV 551 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~-~mnv~~~~~~~~~l~~~~er----gl---i~~~~~~~e~f~~yp-~t~Dl~H~~~~ 551 (629)
.+|||+|||.|.++..|+++-.. -.+++.+|.+++++..+.++ +. +.+.+ ..+..+| ..+|++.+..+
T Consensus 55 ~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~---~d~~~~~~~~~d~v~~~~~ 131 (239)
T TIGR00740 55 SNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILC---NDIRHVEIKNASMVILNFT 131 (239)
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEE---CChhhCCCCCCCEEeeecc
Confidence 35999999999999888764100 13556666666788887665 22 22232 4444555 56898887666
Q ss_pred ccccCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 552 FSIYQDRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 552 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
+..... -+...+|.++.|+|+|||.++++|.
T Consensus 132 l~~~~~-~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 132 LQFLPP-EDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred hhhCCH-HHHHHHHHHHHHhcCCCeEEEEeec
Confidence 654332 2356799999999999999999975
No 190
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.21 E-value=8.7e-06 Score=86.66 Aligned_cols=112 Identities=13% Similarity=0.083 Sum_probs=76.0
Q ss_pred HHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCCCC
Q 006834 207 AYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKRLP 281 (629)
Q Consensus 207 ~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~Lp 281 (629)
.+.+.+.+++.... +.+|||+|||+|.++..+++.+. .++++|+++.+++.|+++ +. ++.|.++|...+.
T Consensus 160 ~l~~~v~~~l~~~~--~~~VLDl~cG~G~~sl~la~~~~---~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~ 234 (315)
T PRK03522 160 QLYATARDWVRELP--PRSMWDLFCGVGGFGLHCATPGM---QLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFA 234 (315)
T ss_pred HHHHHHHHHHHhcC--CCEEEEccCCCCHHHHHHHhcCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHH
Confidence 33444455554322 34899999999999999999865 456779999999999864 33 5888888876654
Q ss_pred C-CCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeCCC
Q 006834 282 Y-PARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPPI 327 (629)
Q Consensus 282 ~-pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P~~ 327 (629)
. ..+.||+|++..... .....+.++..-++|++.++++..+.
T Consensus 235 ~~~~~~~D~Vv~dPPr~----G~~~~~~~~l~~~~~~~ivyvsc~p~ 277 (315)
T PRK03522 235 TAQGEVPDLVLVNPPRR----GIGKELCDYLSQMAPRFILYSSCNAQ 277 (315)
T ss_pred HhcCCCCeEEEECCCCC----CccHHHHHHHHHcCCCeEEEEECCcc
Confidence 2 345799999875321 11222333344478888888885443
No 191
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.20 E-value=3.9e-06 Score=88.23 Aligned_cols=115 Identities=17% Similarity=0.166 Sum_probs=76.9
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhc----ccceeccccccCCCC-Ccccceeecccccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERG----LIGTYQDWCEAFSTY-PRTYDLIHASGVFSIY 555 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~erg----li~~~~~~~e~f~~y-p~t~Dl~H~~~~fs~~ 555 (629)
.+|||+|||+|..+.++++.+. -.|+.+|.++..+..+.++. +-......+...... +..||+|.++.+..
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g~--~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~-- 236 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLGA--AKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAE-- 236 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHH--
Confidence 4699999999999988877653 35666677666777666542 211122222223333 37899999865422
Q ss_pred CCCcCHHHHHHHHhhcccCCcEEEEEeCH-HHHHHHHHHHhcCCCeEEEe
Q 006834 556 QDRCDITNILLEMDRILRPEGTVIFRDTV-EMLVKIRSITEGMRWKSQIM 604 (629)
Q Consensus 556 ~~~c~~~~~l~e~dRiLrPgG~~i~~d~~-~~~~~~~~~~~~l~w~~~~~ 604 (629)
.+..++-++.|+|||||+++++.-. +....+.+.+++. |+....
T Consensus 237 ----~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~~~~ 281 (288)
T TIGR00406 237 ----VIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTVVEI 281 (288)
T ss_pred ----HHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-CceeeE
Confidence 3457889999999999999998653 3456666766665 766543
No 192
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.20 E-value=1.2e-05 Score=82.74 Aligned_cols=110 Identities=17% Similarity=0.151 Sum_probs=79.3
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHc----C--CCeEEEEecCCCCC
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKR-DILTMSFARRDTHEAQVQFALER----G--VPAMIGVISSKRLP 281 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~er----g--~~~~~~v~d~~~Lp 281 (629)
+..|...+...+|+ +|||.|.|+|+++..|+.. +..+ .+...|.+++.++.|+++ + .++.+...|...-.
T Consensus 29 ~~~I~~~l~i~pG~--~VlEaGtGSG~lt~~l~r~v~p~G-~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g 105 (247)
T PF08704_consen 29 ISYILMRLDIRPGS--RVLEAGTGSGSLTHALARAVGPTG-HVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEG 105 (247)
T ss_dssp HHHHHHHTT--TT---EEEEE--TTSHHHHHHHHHHTTTS-EEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG-
T ss_pred HHHHHHHcCCCCCC--EEEEecCCcHHHHHHHHHHhCCCe-EEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccc
Confidence 55677777887777 9999999999999999974 3322 345559999999999865 3 35788888876544
Q ss_pred CC---CCCeeEEEecCcccccccCHHHHHHHHHhcc-cCCcEEEEEeCCC
Q 006834 282 YP---ARAFDMAHCSGCLIPWYMYDGLYLLEVDRVL-RPGGYWILSGPPI 327 (629)
Q Consensus 282 ~p---d~sFDlV~~s~~L~h~~~d~~~~L~el~RvL-KPGG~liis~P~~ 327 (629)
|. ++.||.|+. .++ +|-.++..+.++| ||||.++...|.+
T Consensus 106 ~~~~~~~~~DavfL-----Dlp-~Pw~~i~~~~~~L~~~gG~i~~fsP~i 149 (247)
T PF08704_consen 106 FDEELESDFDAVFL-----DLP-DPWEAIPHAKRALKKPGGRICCFSPCI 149 (247)
T ss_dssp -STT-TTSEEEEEE-----ESS-SGGGGHHHHHHHE-EEEEEEEEEESSH
T ss_pred ccccccCcccEEEE-----eCC-CHHHHHHHHHHHHhcCCceEEEECCCH
Confidence 42 368999985 333 6667899999999 9999999998755
No 193
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.18 E-value=1.3e-05 Score=76.99 Aligned_cols=118 Identities=15% Similarity=0.042 Sum_probs=95.1
Q ss_pred hHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCC---
Q 006834 205 ADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLP--- 281 (629)
Q Consensus 205 a~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp--- 281 (629)
.....+.+...+....+ .-|||+|.|||-++..++++++...+++.++.+.+.+....++...+.+..+|+..+.
T Consensus 33 Ss~lA~~M~s~I~pesg--lpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l 110 (194)
T COG3963 33 SSILARKMASVIDPESG--LPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTL 110 (194)
T ss_pred cHHHHHHHHhccCcccC--CeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHH
Confidence 34456666666655444 3799999999999999999998877889999999999999999888888888776654
Q ss_pred --CCCCCeeEEEecCcccccccC-HHHHHHHHHhcccCCcEEEEEe
Q 006834 282 --YPARAFDMAHCSGCLIPWYMY-DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 282 --~pd~sFDlV~~s~~L~h~~~d-~~~~L~el~RvLKPGG~liis~ 324 (629)
+.+..||.|+|..-+..++.. .-++|+++...|++||-++...
T Consensus 111 ~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 111 GEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred hhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 567889999997766666544 3468999999999999998764
No 194
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.16 E-value=8.6e-06 Score=95.65 Aligned_cols=101 Identities=13% Similarity=0.062 Sum_probs=74.0
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC---CeEEEEecCCCC-CCCCCCeeEEEecC
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV---PAMIGVISSKRL-PYPARAFDMAHCSG 294 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~---~~~~~v~d~~~L-p~pd~sFDlV~~s~ 294 (629)
+++|||+|||+|.++..++..|.. .++++|+|+.+++.|+++ +. .+.+.++|.... .-..++||+|++..
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga~--~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGAK--STTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 348999999999999999998764 467779999999999875 33 467888886442 11156899999854
Q ss_pred ccccc----------ccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 295 CLIPW----------YMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 295 ~L~h~----------~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
-...- ..+...++..+.++|+|||.++++..
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 32110 11124578888999999999988753
No 195
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.16 E-value=2.3e-05 Score=68.76 Aligned_cols=97 Identities=25% Similarity=0.316 Sum_probs=70.1
Q ss_pred EEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC--CC---eEEEEecCCC--CCCCC-CCeeEEEecCccc
Q 006834 226 AVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG--VP---AMIGVISSKR--LPYPA-RAFDMAHCSGCLI 297 (629)
Q Consensus 226 VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg--~~---~~~~v~d~~~--Lp~pd-~sFDlV~~s~~L~ 297 (629)
+||+|||+|... .+.........++++|.++.++..+.... .. +.+...+... +++.. ..||++ +.....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 999999999965 33333221123455799999999866543 11 4566666665 77776 589999 666665
Q ss_pred ccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 298 PWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 298 h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
++.. ....+.++.++|+|+|.+++...
T Consensus 130 ~~~~-~~~~~~~~~~~l~~~g~~~~~~~ 156 (257)
T COG0500 130 HLLP-PAKALRELLRVLKPGGRLVLSDL 156 (257)
T ss_pred hcCC-HHHHHHHHHHhcCCCcEEEEEec
Confidence 6653 78899999999999999999864
No 196
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.15 E-value=2e-06 Score=88.23 Aligned_cols=99 Identities=9% Similarity=0.171 Sum_probs=68.0
Q ss_pred EEEeecccchhHHhhhhC---CCeEEEEecCCCCCCCchHHHHhh----cccceeccccccCCCCC-cccceeecccccc
Q 006834 482 NVMDMNAYLGGFAAAMSK---YPVWVMNVVPFHSNPDTLGAIYER----GLIGTYQDWCEAFSTYP-RTYDLIHASGVFS 553 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~---~~v~~mnv~~~~~~~~~l~~~~er----gli~~~~~~~e~f~~yp-~t~Dl~H~~~~fs 553 (629)
.|||+|||+|..+.+|++ .+- ..|+.+|.++.++..+.++ |+-.-+.-.+..+...| ..||++-+..++.
T Consensus 59 ~vLDlGcGtG~~~~~l~~~~~~~~--~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~l~ 136 (247)
T PRK15451 59 QVYDLGCSLGAATLSVRRNIHHDN--CKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFTLQ 136 (247)
T ss_pred EEEEEcccCCHHHHHHHHhcCCCC--CeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhHHH
Confidence 599999999999888765 222 2566677777888888766 33211111234445555 5689877765554
Q ss_pred ccCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 554 IYQDRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 554 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
... ..+...++.|+.|+|||||.+++.|.
T Consensus 137 ~l~-~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 137 FLE-PSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred hCC-HHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 432 23467899999999999999999874
No 197
>PLN02672 methionine S-methyltransferase
Probab=98.15 E-value=3.1e-05 Score=93.71 Aligned_cols=100 Identities=14% Similarity=0.005 Sum_probs=72.3
Q ss_pred CeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC---------------------CCeEEEEecCCCCCC
Q 006834 224 RTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG---------------------VPAMIGVISSKRLPY 282 (629)
Q Consensus 224 ~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg---------------------~~~~~~v~d~~~Lp~ 282 (629)
.+|||+|||+|.++..+++..... .++++|+|+.+++.|+++. .++.+...|.....-
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~~~~-~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKWLPS-KVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHCCCC-EEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 489999999999999999875422 5678899999999997541 136777777654321
Q ss_pred C-CCCeeEEEecCcccccc---------------------------------cCH----HHHHHHHHhcccCCcEEEEEe
Q 006834 283 P-ARAFDMAHCSGCLIPWY---------------------------------MYD----GLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 283 p-d~sFDlV~~s~~L~h~~---------------------------------~d~----~~~L~el~RvLKPGG~liis~ 324 (629)
. ...||+|+++.-.+.-. ++. ..++.+..++|+|||.+++..
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1 23699999966543111 010 357788889999999999974
No 198
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.15 E-value=1.9e-05 Score=86.64 Aligned_cols=100 Identities=13% Similarity=0.035 Sum_probs=71.1
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC---CeEEEEecCCCCC--C--CCCCeeEEE
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV---PAMIGVISSKRLP--Y--PARAFDMAH 291 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~---~~~~~v~d~~~Lp--~--pd~sFDlV~ 291 (629)
+++|||+|||+|.++..++..+.. .++++|+|+.+++.|+++ +. .+.+..+|....- + ..++||+|+
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~ga~--~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGGCS--QVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 348999999999999887766542 567779999999999864 33 4678888875531 1 246899999
Q ss_pred ecCccccccc--------CHHHHHHHHHhcccCCcEEEEEe
Q 006834 292 CSGCLIPWYM--------YDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 292 ~s~~L~h~~~--------d~~~~L~el~RvLKPGG~liis~ 324 (629)
+..-...-.. .-..++....++|+|||.+++.+
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 9754311110 11234556789999999999875
No 199
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.14 E-value=1.3e-05 Score=85.45 Aligned_cols=115 Identities=17% Similarity=0.134 Sum_probs=86.0
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEE-ecCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGV-ISSKR 279 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v-~d~~~ 279 (629)
..+...+.++.....|. .|||--||||+++....-.|..++ |.|+++.|++-|+.+ ++ +..+.. .|+..
T Consensus 183 P~lAR~mVNLa~v~~G~--~vlDPFcGTGgiLiEagl~G~~vi---G~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~ 257 (347)
T COG1041 183 PRLARAMVNLARVKRGE--LVLDPFCGTGGILIEAGLMGARVI---GSDIDERMVRGAKINLEYYGIEDYPVLKVLDATN 257 (347)
T ss_pred HHHHHHHHHHhccccCC--EeecCcCCccHHHHhhhhcCceEe---ecchHHHHHhhhhhhhhhhCcCceeEEEeccccc
Confidence 45566666776666666 899999999999888877777554 559999999999865 22 333444 49999
Q ss_pred CCCCCCCeeEEEecCccc-----ccc--cC-HHHHHHHHHhcccCCcEEEEEeC
Q 006834 280 LPYPARAFDMAHCSGCLI-----PWY--MY-DGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 280 Lp~pd~sFDlV~~s~~L~-----h~~--~d-~~~~L~el~RvLKPGG~liis~P 325 (629)
+|+++++||.|.+-.-.- .-. ++ -..+|..+.++|++||++++..|
T Consensus 258 lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 258 LPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 999998999999833220 111 01 24689999999999999999987
No 200
>PRK14968 putative methyltransferase; Provisional
Probab=98.14 E-value=8.4e-06 Score=78.99 Aligned_cols=135 Identities=19% Similarity=0.235 Sum_probs=85.2
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----c-----ccceeccccccCCCCC-cccceeeccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----G-----LIGTYQDWCEAFSTYP-RTYDLIHASG 550 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----g-----li~~~~~~~e~f~~yp-~t~Dl~H~~~ 550 (629)
..|||+|||.|.++..|++++ -+|..+|.++.++..+.++ | +.-..+|+.+. ++ ..||+|=++.
T Consensus 25 ~~vLd~G~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~d~vi~n~ 98 (188)
T PRK14968 25 DRVLEVGTGSGIVAIVAAKNG---KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP---FRGDKFDVILFNP 98 (188)
T ss_pred CEEEEEccccCHHHHHHHhhc---ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc---ccccCceEEEECC
Confidence 369999999999999998874 3566666665666666332 2 22233355443 34 4799986554
Q ss_pred cccccC------------------CCcCHHHHHHHHhhcccCCcEEEEEeCH-HHHHHHHHHHhcCCCeEEEeecCCCCC
Q 006834 551 VFSIYQ------------------DRCDITNILLEMDRILRPEGTVIFRDTV-EMLVKIRSITEGMRWKSQIMDHESGPF 611 (629)
Q Consensus 551 ~fs~~~------------------~~c~~~~~l~e~dRiLrPgG~~i~~d~~-~~~~~~~~~~~~l~w~~~~~~~e~~~~ 611 (629)
-|.... ....++.++.++.|+|+|||.+++-... .....+.+.+....|+......+.-.+
T Consensus 99 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~ 178 (188)
T PRK14968 99 PYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEVVAEEKFPF 178 (188)
T ss_pred CcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeeeeeecccCC
Confidence 432210 1223567899999999999998885432 235678888888888765443333333
Q ss_pred CCceEEEEEe
Q 006834 612 NPEKILFAAK 621 (629)
Q Consensus 612 ~~e~~l~~~K 621 (629)
+.-.+++.+|
T Consensus 179 ~~~~~~~~~~ 188 (188)
T PRK14968 179 EELIVLELVK 188 (188)
T ss_pred ceEEEEEEeC
Confidence 3334454443
No 201
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.14 E-value=5.7e-06 Score=82.86 Aligned_cols=97 Identities=20% Similarity=0.261 Sum_probs=66.8
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcc--cceec-cccccCCCCCcccceeeccccccccCC
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGL--IGTYQ-DWCEAFSTYPRTYDLIHASGVFSIYQD 557 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergl--i~~~~-~~~e~f~~yp~t~Dl~H~~~~fs~~~~ 557 (629)
..|||+|||.|.+..+|++..- -..+..+|.++..+..+.++.- +..+. |. +.++..+.+||+|.+..++...
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~vi~~~~l~~~-- 111 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFP-QAEFIALDISAGMLAQAKTKLSENVQFICGDA-EKLPLEDSSFDLIVSNLALQWC-- 111 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCC-CCcEEEEeChHHHHHHHHHhcCCCCeEEecch-hhCCCCCCceeEEEEhhhhhhc--
Confidence 5699999999999999987631 1124555555566666666542 12222 22 2333344899999997776533
Q ss_pred CcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 558 RCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 558 ~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
.+...+|.++.|+|+|||.+++..
T Consensus 112 -~~~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 112 -DDLSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred -cCHHHHHHHHHHHcCCCcEEEEEe
Confidence 356889999999999999999975
No 202
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.13 E-value=3.1e-05 Score=80.58 Aligned_cols=154 Identities=14% Similarity=0.178 Sum_probs=101.2
Q ss_pred HHHHHHHHhhcCc--cCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHH---Hc---C----------
Q 006834 206 DAYIDNINELIPL--TGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFAL---ER---G---------- 267 (629)
Q Consensus 206 ~~~i~~I~~lL~~--~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~---er---g---------- 267 (629)
+..++.|.+..+. ......+||--|||.|+++..++.+|..+ .+.|.|--|+-... .. .
T Consensus 38 ~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~~~---~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~ 114 (270)
T PF07942_consen 38 SPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGYAV---QGNEFSYFMLLASNFILNHCSQPNQFTIYPFVH 114 (270)
T ss_pred HHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccceE---EEEEchHHHHHHHHHHHcccCCCCcEEEeccee
Confidence 4456677777663 22234589999999999999999998754 55699998854332 10 0
Q ss_pred -----------------------------CCeEEEEecCCCCCCCC---CCeeEEEecCcccccccCHHHHHHHHHhccc
Q 006834 268 -----------------------------VPAMIGVISSKRLPYPA---RAFDMAHCSGCLIPWYMYDGLYLLEVDRVLR 315 (629)
Q Consensus 268 -----------------------------~~~~~~v~d~~~Lp~pd---~sFDlV~~s~~L~h~~~d~~~~L~el~RvLK 315 (629)
.++....+|...+..++ ++||+|++.+.+ .-..+.-.+|..+.++||
T Consensus 115 ~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFI-DTA~Ni~~Yi~tI~~lLk 193 (270)
T PF07942_consen 115 SFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFI-DTAENIIEYIETIEHLLK 193 (270)
T ss_pred cccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEe-echHHHHHHHHHHHHHhc
Confidence 01222233333333233 699999987655 555567789999999999
Q ss_pred CCcEEEEEeCCCCccccccCccCcchhhhhHHHHHHHHHHHhcceeeccc
Q 006834 316 PGGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIEDIAKRLCWKKLIEK 365 (629)
Q Consensus 316 PGG~liis~P~~~w~~~~~~w~~~~e~l~~~~~~ie~l~~~l~w~~v~~~ 365 (629)
|||++|=.+|-...-... + ......++-..++|..+++.++|+.+.+.
T Consensus 194 pgG~WIN~GPLlyh~~~~-~-~~~~~sveLs~eEi~~l~~~~GF~~~~~~ 241 (270)
T PF07942_consen 194 PGGYWINFGPLLYHFEPM-S-IPNEMSVELSLEEIKELIEKLGFEIEKEE 241 (270)
T ss_pred cCCEEEecCCccccCCCC-C-CCCCcccCCCHHHHHHHHHHCCCEEEEEE
Confidence 999988888744321111 0 11222355567889999999999877543
No 203
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.12 E-value=1e-05 Score=81.34 Aligned_cols=146 Identities=14% Similarity=0.142 Sum_probs=95.4
Q ss_pred hHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCC-cEeEEEeecCcHHHHHHHHHcC-------CCeEEEEec
Q 006834 205 ADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDI-LTMSFARRDTHEAQVQFALERG-------VPAMIGVIS 276 (629)
Q Consensus 205 a~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~-~~v~i~gvDiS~~~i~~A~erg-------~~~~~~v~d 276 (629)
.+.+.+.+.+.-.-+...+.+|||...|-|.++...+++|. .++++ +.++..++.|.-+. ..+.+..+|
T Consensus 117 tdP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~Vitv---Ekdp~VLeLa~lNPwSr~l~~~~i~iilGD 193 (287)
T COG2521 117 TDPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITV---EKDPNVLELAKLNPWSRELFEIAIKIILGD 193 (287)
T ss_pred cCcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHcCCcEEEEE---eeCCCeEEeeccCCCCccccccccEEeccc
Confidence 45556666555444443455999999999999999999997 55555 88888888887431 235777777
Q ss_pred CCCC--CCCCCCeeEEEecCccccccc--CHHHHHHHHHhcccCCcEEEEEeCCCCccccccCccCcchhhhhHHHHHHH
Q 006834 277 SKRL--PYPARAFDMAHCSGCLIPWYM--YDGLYLLEVDRVLRPGGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIED 352 (629)
Q Consensus 277 ~~~L--p~pd~sFDlV~~s~~L~h~~~--d~~~~L~el~RvLKPGG~liis~P~~~w~~~~~~w~~~~e~l~~~~~~ie~ 352 (629)
+.++ .|+|.+||+|+--.--..... .-..+.+|++|+|||||.++-.+-+..- .+.+ ...+..+.+
T Consensus 194 ~~e~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~--ryrG--------~d~~~gVa~ 263 (287)
T COG2521 194 AYEVVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGK--RYRG--------LDLPKGVAE 263 (287)
T ss_pred HHHHHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCc--cccc--------CChhHHHHH
Confidence 7654 488999999985221111111 1357899999999999999885422110 1111 112344666
Q ss_pred HHHHhcceeec
Q 006834 353 IAKRLCWKKLI 363 (629)
Q Consensus 353 l~~~l~w~~v~ 363 (629)
..++.+|..+.
T Consensus 264 RLr~vGF~~v~ 274 (287)
T COG2521 264 RLRRVGFEVVK 274 (287)
T ss_pred HHHhcCceeee
Confidence 66777887543
No 204
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.09 E-value=1.8e-05 Score=81.49 Aligned_cols=124 Identities=19% Similarity=0.178 Sum_probs=79.9
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cccceeccccccCCCCCcccceeeccccccccC
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GLIGTYQDWCEAFSTYPRTYDLIHASGVFSIYQ 556 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gli~~~~~~~e~f~~yp~t~Dl~H~~~~fs~~~ 556 (629)
.+|||+|||.|..+.++.+.+.- .|+.+|.++.++..+.++ |+-...+-.+. ..+||+|.|+-+.
T Consensus 121 ~~VLDiGcGsG~l~i~~~~~g~~--~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~-----~~~fD~Vvani~~---- 189 (250)
T PRK00517 121 KTVLDVGCGSGILAIAAAKLGAK--KVLAVDIDPQAVEAARENAELNGVELNVYLPQG-----DLKADVIVANILA---- 189 (250)
T ss_pred CEEEEeCCcHHHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHcCCCceEEEccC-----CCCcCEEEEcCcH----
Confidence 36999999999998888776531 355666665676666554 33111110000 1279999884321
Q ss_pred CCcCHHHHHHHHhhcccCCcEEEEEeCH-HHHHHHHHHHhcCCCeEEEeecCCCCCCCceEEEEEe
Q 006834 557 DRCDITNILLEMDRILRPEGTVIFRDTV-EMLVKIRSITEGMRWKSQIMDHESGPFNPEKILFAAK 621 (629)
Q Consensus 557 ~~c~~~~~l~e~dRiLrPgG~~i~~d~~-~~~~~~~~~~~~l~w~~~~~~~e~~~~~~e~~l~~~K 621 (629)
-.+..++.++.|+|||||++|+++.. +....+...+....+.......+ +.-..++++|
T Consensus 190 --~~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~~~~----~~W~~~~~~~ 249 (250)
T PRK00517 190 --NPLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEVLER----GEWVALVGKK 249 (250)
T ss_pred --HHHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEEEEe----CCEEEEEEEe
Confidence 12456888999999999999999754 34667778888888887644333 2344555555
No 205
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.09 E-value=2e-05 Score=87.37 Aligned_cols=108 Identities=19% Similarity=0.192 Sum_probs=75.5
Q ss_pred HHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C-CCeEEEEecCCCC-
Q 006834 207 AYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G-VPAMIGVISSKRL- 280 (629)
Q Consensus 207 ~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g-~~~~~~v~d~~~L- 280 (629)
.+.+.+.+.+...++ .+|||+|||+|.++..|++... .++++|+++.+++.|+++ + .++.+..+|....
T Consensus 279 ~l~~~~~~~l~~~~~--~~vLDl~cG~G~~sl~la~~~~---~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l 353 (431)
T TIGR00479 279 KLVDRALEALELQGE--ELVVDAYCGVGTFTLPLAKQAK---SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVL 353 (431)
T ss_pred HHHHHHHHHhccCCC--CEEEEcCCCcCHHHHHHHHhCC---EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHH
Confidence 344555555544333 3899999999999999998754 456779999999999864 2 3578888886542
Q ss_pred ---CCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEE
Q 006834 281 ---PYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 281 ---p~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis 323 (629)
++.+++||+|++...-... ...++..+.+ |+|++.++++
T Consensus 354 ~~~~~~~~~~D~vi~dPPr~G~---~~~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 354 PKQPWAGQIPDVLLLDPPRKGC---AAEVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred HHHHhcCCCCCEEEECcCCCCC---CHHHHHHHHh-cCCCEEEEEc
Confidence 2445689999975532111 2456666554 8999988777
No 206
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.09 E-value=4.9e-05 Score=76.80 Aligned_cols=97 Identities=16% Similarity=0.162 Sum_probs=72.3
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC--CeEEEE-ecCCC-CC-CCCCCeeEEEec
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV--PAMIGV-ISSKR-LP-YPARAFDMAHCS 293 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v-~d~~~-Lp-~pd~sFDlV~~s 293 (629)
+++|||||.+.|.-+.+|+..-.....++.+|.++++.+.|++. |. .+.... +|... +. ...++||+|+.-
T Consensus 60 ~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliFID 139 (219)
T COG4122 60 PKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVFID 139 (219)
T ss_pred CceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEEEe
Confidence 44899999999999999998755333678889999999999975 32 244444 34322 12 346899999952
Q ss_pred CcccccccCHHHHHHHHHhcccCCcEEEEE
Q 006834 294 GCLIPWYMYDGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 294 ~~L~h~~~d~~~~L~el~RvLKPGG~liis 323 (629)
+...+-..++..+.++|||||.+++.
T Consensus 140 ----adK~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 140 ----ADKADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred ----CChhhCHHHHHHHHHHhCCCcEEEEe
Confidence 33334467999999999999999996
No 207
>PRK05785 hypothetical protein; Provisional
Probab=98.09 E-value=4.2e-06 Score=84.98 Aligned_cols=106 Identities=16% Similarity=0.224 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHhhcccCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcccceeccccccCCC
Q 006834 459 ELWKDRMTYYKKIDGLFHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAFST 538 (629)
Q Consensus 459 ~~w~~~v~~y~~~~~~~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergli~~~~~~~e~f~~ 538 (629)
..|++.+...... .+..+ .+|||+|||+|-++.+|++.. --+|+.+|.++++++.+.+++ ..++.-.+.++
T Consensus 35 ~~wr~~~~~~l~~--~~~~~--~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~--~~~~~d~~~lp- 105 (226)
T PRK05785 35 VRWRAELVKTILK--YCGRP--KKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD--DKVVGSFEALP- 105 (226)
T ss_pred HHHHHHHHHHHHH--hcCCC--CeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc--ceEEechhhCC-
Confidence 5677655432211 11222 469999999999999998872 137888898889999998874 23333345543
Q ss_pred CC-cccceeeccccccccCCCcCHHHHHHHHhhcccCCc
Q 006834 539 YP-RTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEG 576 (629)
Q Consensus 539 yp-~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG 576 (629)
|| ++||+|-+...+ ++--+.+..|.||.|||||.+
T Consensus 106 ~~d~sfD~v~~~~~l---~~~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 106 FRDKSFDVVMSSFAL---HASDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred CCCCCEEEEEecChh---hccCCHHHHHHHHHHHhcCce
Confidence 44 899999985544 234578999999999999954
No 208
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.09 E-value=1.2e-05 Score=83.93 Aligned_cols=86 Identities=12% Similarity=0.038 Sum_probs=66.5
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC--CCeEEEEecCCCCCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG--VPAMIGVISSKRLPYP 283 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg--~~~~~~v~d~~~Lp~p 283 (629)
...++.+.+.+....+. +|||+|||+|.++..|++++. .++++|+++.|++.++++. .++.+.++|...++++
T Consensus 28 ~~i~~~i~~~l~~~~~~--~VLEiG~G~G~lt~~L~~~~~---~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~ 102 (272)
T PRK00274 28 ENILDKIVDAAGPQPGD--NVLEIGPGLGALTEPLLERAA---KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLS 102 (272)
T ss_pred HHHHHHHHHhcCCCCcC--eEEEeCCCccHHHHHHHHhCC---cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHH
Confidence 34566677766654444 899999999999999999875 4567799999999998764 4688899998888765
Q ss_pred CCCeeEEEecCcc
Q 006834 284 ARAFDMAHCSGCL 296 (629)
Q Consensus 284 d~sFDlV~~s~~L 296 (629)
+-.+|.|+++..+
T Consensus 103 ~~~~~~vv~NlPY 115 (272)
T PRK00274 103 ELQPLKVVANLPY 115 (272)
T ss_pred HcCcceEEEeCCc
Confidence 4336888887643
No 209
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.08 E-value=5.6e-06 Score=82.57 Aligned_cols=122 Identities=18% Similarity=0.165 Sum_probs=80.7
Q ss_pred eeEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhh----cc--cceec-cccccCCC-CC-cccceeecc
Q 006834 480 YRNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYER----GL--IGTYQ-DWCEAFST-YP-RTYDLIHAS 549 (629)
Q Consensus 480 ~R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~er----gl--i~~~~-~~~e~f~~-yp-~t~Dl~H~~ 549 (629)
-.+|||+|||+|.++..|++. +- .+|+.+|.++.++..+.++ |+ +.+++ |+.+.+.. ++ .+||+|-+.
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~--~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPD--INFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCC--ccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 357999999999999998764 21 2455666665677666543 43 23333 33233432 54 889998763
Q ss_pred cccc-----ccCCCcCHHHHHHHHhhcccCCcEEEEE-eCHHHHHHHHHHHhcCCCeEEE
Q 006834 550 GVFS-----IYQDRCDITNILLEMDRILRPEGTVIFR-DTVEMLVKIRSITEGMRWKSQI 603 (629)
Q Consensus 550 ~~fs-----~~~~~c~~~~~l~e~dRiLrPgG~~i~~-d~~~~~~~~~~~~~~l~w~~~~ 603 (629)
.... ....+...+.+|.++.|+|||||.++|. +.......+.+.+..--|.+.+
T Consensus 119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~~ 178 (202)
T PRK00121 119 FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLVS 178 (202)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCcccccc
Confidence 2211 1112234688999999999999999996 6666777777777777787763
No 210
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.07 E-value=2.1e-05 Score=81.41 Aligned_cols=84 Identities=18% Similarity=0.155 Sum_probs=67.2
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC---CCeEEEEecCCCCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG---VPAMIGVISSKRLPY 282 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg---~~~~~~v~d~~~Lp~ 282 (629)
...++.+.+.+...++. +|||||||+|.++..|++++. .++++|+++.+++.++++. .++.+..+|...+++
T Consensus 15 ~~~~~~iv~~~~~~~~~--~VLEIG~G~G~lt~~L~~~~~---~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~ 89 (258)
T PRK14896 15 DRVVDRIVEYAEDTDGD--PVLEIGPGKGALTDELAKRAK---KVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDL 89 (258)
T ss_pred HHHHHHHHHhcCCCCcC--eEEEEeCccCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCc
Confidence 55577777776655444 899999999999999999864 4567799999999998763 358888899888776
Q ss_pred CCCCeeEEEecCcc
Q 006834 283 PARAFDMAHCSGCL 296 (629)
Q Consensus 283 pd~sFDlV~~s~~L 296 (629)
+ .||.|+++..+
T Consensus 90 ~--~~d~Vv~NlPy 101 (258)
T PRK14896 90 P--EFNKVVSNLPY 101 (258)
T ss_pred h--hceEEEEcCCc
Confidence 5 48999998765
No 211
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.05 E-value=2.8e-06 Score=74.18 Aligned_cols=91 Identities=24% Similarity=0.313 Sum_probs=50.1
Q ss_pred EeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHH----Hhhccc--ceec-cccccCCCCC-cccceeecccccccc
Q 006834 484 MDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAI----YERGLI--GTYQ-DWCEAFSTYP-RTYDLIHASGVFSIY 555 (629)
Q Consensus 484 lD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~----~ergli--~~~~-~~~e~f~~yp-~t~Dl~H~~~~fs~~ 555 (629)
||+|||+|.+..+|.+.. -...++.+|.++.++..+ .+.+.- .... +--+.+...+ .+||+|.+.++|...
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 799999999999998762 223444555555666333 332321 1111 1112333344 599999999998876
Q ss_pred CCCcCHHHHHHHHhhcccCCcEE
Q 006834 556 QDRCDITNILLEMDRILRPEGTV 578 (629)
Q Consensus 556 ~~~c~~~~~l~e~dRiLrPgG~~ 578 (629)
-+++.+|..+.++|||||.+
T Consensus 80 ---~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 ---EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---S-HHHHHHHHTTT-TSS-EE
T ss_pred ---hhHHHHHHHHHHHcCCCCCC
Confidence 56789999999999999986
No 212
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.04 E-value=4.8e-05 Score=78.43 Aligned_cols=101 Identities=13% Similarity=0.095 Sum_probs=71.0
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC---CCeEEEEecCCCCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG---VPAMIGVISSKRLPY 282 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg---~~~~~~v~d~~~Lp~ 282 (629)
....+.+.+.+....+. +|||+|||+|.++..|++++.. ++++|+++.+++.++++. .++.+..+|...+++
T Consensus 15 ~~i~~~i~~~~~~~~~~--~VLEiG~G~G~lt~~L~~~~~~---v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~ 89 (253)
T TIGR00755 15 ESVIQKIVEAANVLEGD--VVLEIGPGLGALTEPLLKRAKK---VTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDL 89 (253)
T ss_pred HHHHHHHHHhcCCCCcC--EEEEeCCCCCHHHHHHHHhCCc---EEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCCh
Confidence 44566666666554444 8999999999999999998764 566699999999998763 467888888888776
Q ss_pred CCCCee---EEEecCcccccccCHHHHHHHHHhcccCCcE
Q 006834 283 PARAFD---MAHCSGCLIPWYMYDGLYLLEVDRVLRPGGY 319 (629)
Q Consensus 283 pd~sFD---lV~~s~~L~h~~~d~~~~L~el~RvLKPGG~ 319 (629)
+ +|| +|+++..+ |+. ..++..+.. .+|+.
T Consensus 90 ~--~~d~~~~vvsNlPy-~i~---~~il~~ll~--~~~~~ 121 (253)
T TIGR00755 90 P--DFPKQLKVVSNLPY-NIS---SPLIFKLLE--KPKFR 121 (253)
T ss_pred h--HcCCcceEEEcCCh-hhH---HHHHHHHhc--cCCCc
Confidence 5 466 77776544 332 344444443 44443
No 213
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.03 E-value=6e-06 Score=85.65 Aligned_cols=100 Identities=20% Similarity=0.284 Sum_probs=64.8
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhh----cc--cceec-cccccCCCCC-cccce
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYER----GL--IGTYQ-DWCEAFSTYP-RTYDL 545 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~er----gl--i~~~~-~~~e~f~~yp-~t~Dl 545 (629)
+..+. +|||+|||.|..+..+++. +- ...|+.+|.++.++..+.++ |+ +...+ |. +.+ ++| .+||+
T Consensus 75 ~~~g~--~VLDiG~G~G~~~~~~a~~~g~-~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~-~~l-~~~~~~fD~ 149 (272)
T PRK11873 75 LKPGE--TVLDLGSGGGFDCFLAARRVGP-TGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEI-EAL-PVADNSVDV 149 (272)
T ss_pred CCCCC--EEEEeCCCCCHHHHHHHHHhCC-CCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcch-hhC-CCCCCceeE
Confidence 44554 6999999998765444332 10 01345556555778877764 33 11222 11 222 244 79999
Q ss_pred eeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 546 IHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 546 ~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
|+++.++.... +.+.+|.|+-|+|||||.+++.|
T Consensus 150 Vi~~~v~~~~~---d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 150 IISNCVINLSP---DKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred EEEcCcccCCC---CHHHHHHHHHHHcCCCcEEEEEE
Confidence 99987765433 45889999999999999999975
No 214
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.02 E-value=1.3e-05 Score=79.66 Aligned_cols=99 Identities=21% Similarity=0.224 Sum_probs=65.2
Q ss_pred eeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcc----cceec-cccccCCCCCcccceeeccccccc
Q 006834 480 YRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGL----IGTYQ-DWCEAFSTYPRTYDLIHASGVFSI 554 (629)
Q Consensus 480 ~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergl----i~~~~-~~~e~f~~yp~t~Dl~H~~~~fs~ 554 (629)
-.+|||+|||.|.++.++.+..--.-+++.+|.++..+..+.++.- +-.++ |.. ..+.-+.+||+|++..++..
T Consensus 40 ~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~-~~~~~~~~~D~i~~~~~~~~ 118 (223)
T TIGR01934 40 GQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAE-ALPFEDNSFDAVTIAFGLRN 118 (223)
T ss_pred CCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchh-cCCCCCCcEEEEEEeeeeCC
Confidence 3479999999999999987652100134444554466667666542 22322 221 12211368999998666543
Q ss_pred cCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 555 YQDRCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 555 ~~~~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
-.+...+|.++.++|||||.+++.+
T Consensus 119 ---~~~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 119 ---VTDIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred ---cccHHHHHHHHHHHcCCCcEEEEEE
Confidence 3457889999999999999999864
No 215
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.02 E-value=2.3e-05 Score=78.62 Aligned_cols=97 Identities=16% Similarity=0.103 Sum_probs=71.6
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C--CCeEEEEecCCC-CC-----CCCCCeeEE
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G--VPAMIGVISSKR-LP-----YPARAFDMA 290 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g--~~~~~~v~d~~~-Lp-----~pd~sFDlV 290 (629)
+++|||||+++|.-+.+|++.-.....++.+|.+++..+.|++. | ..+.+..+++.. ++ .+.++||+|
T Consensus 46 ~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~V 125 (205)
T PF01596_consen 46 PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFV 125 (205)
T ss_dssp -SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEE
T ss_pred CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEE
Confidence 34899999999999999998643333567779999999999753 3 357788777643 12 124689999
Q ss_pred EecCcccccccCHHHHHHHHHhcccCCcEEEEE
Q 006834 291 HCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 291 ~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis 323 (629)
+.-. ...+-..++..+.++|+|||.+++.
T Consensus 126 FiDa----~K~~y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 126 FIDA----DKRNYLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp EEES----TGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEcc----cccchhhHHHHHhhhccCCeEEEEc
Confidence 9644 2323457888999999999999997
No 216
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=2.2e-05 Score=77.89 Aligned_cols=109 Identities=16% Similarity=0.148 Sum_probs=77.3
Q ss_pred HHHHHHHHhhcC--ccCCCCCeEEEeCCCCchHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHcC---------------
Q 006834 206 DAYIDNINELIP--LTGGNIRTAVDTGCGVASWGAYLLKR-DILTMSFARRDTHEAQVQFALERG--------------- 267 (629)
Q Consensus 206 ~~~i~~I~~lL~--~~~g~~~~VLDIGCGtG~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~erg--------------- 267 (629)
......+.++|. +.+|- ++||+|.|+|.++..++.. +.......|+|..++.++.++++-
T Consensus 66 p~mha~~le~L~~~L~pG~--s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~ 143 (237)
T KOG1661|consen 66 PHMHATALEYLDDHLQPGA--SFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKR 143 (237)
T ss_pred hHHHHHHHHHHHHhhccCc--ceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhcc
Confidence 333444445554 33444 8999999999999888743 333222267799999999988641
Q ss_pred CCeEEEEecCCCCCCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEE
Q 006834 268 VPAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 268 ~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis 323 (629)
.++.++++|.....-+...||.|||...- ....+++...|+|||.+++-
T Consensus 144 ~~l~ivvGDgr~g~~e~a~YDaIhvGAaa-------~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 144 GELSIVVGDGRKGYAEQAPYDAIHVGAAA-------SELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred CceEEEeCCccccCCccCCcceEEEccCc-------cccHHHHHHhhccCCeEEEe
Confidence 24667888888777677899999997533 34557778889999999885
No 217
>PLN02476 O-methyltransferase
Probab=98.01 E-value=9.7e-05 Score=77.32 Aligned_cols=97 Identities=11% Similarity=0.074 Sum_probs=70.6
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC--CeEEEEecCCC-CC-C----CCCCeeEE
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV--PAMIGVISSKR-LP-Y----PARAFDMA 290 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~~~-Lp-~----pd~sFDlV 290 (629)
.++|||||+|+|..+.+++..-.....++.+|.+++..+.|++. |. .+.+..+++.. |+ + ..++||+|
T Consensus 119 ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~V 198 (278)
T PLN02476 119 AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFA 198 (278)
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEE
Confidence 34899999999999999987432222466779999999999864 33 47777777533 22 1 13689999
Q ss_pred EecCcccccccCHHHHHHHHHhcccCCcEEEEE
Q 006834 291 HCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 291 ~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis 323 (629)
+.-. ...+-..++..+.++|+|||.+++.
T Consensus 199 FIDa----~K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 199 FVDA----DKRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred EECC----CHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 9633 2223457889999999999999886
No 218
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.01 E-value=2.9e-05 Score=75.65 Aligned_cols=118 Identities=15% Similarity=0.062 Sum_probs=68.8
Q ss_pred chHHHHHHHHhhc----CccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C----CCeE
Q 006834 204 GADAYIDNINELI----PLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G----VPAM 271 (629)
Q Consensus 204 ga~~~i~~I~~lL----~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g----~~~~ 271 (629)
++..+.+.+.+.. ......+.+|||+|||+|..+..++... ....++..|..+ .++..+.+ + ..+.
T Consensus 23 aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~ 100 (173)
T PF10294_consen 23 AALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGSLLDGRVS 100 (173)
T ss_dssp HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT--------E
T ss_pred hHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhcccccccccc
Confidence 4445555555532 1222345599999999999999888882 122456679888 77766543 1 2345
Q ss_pred EEEecCCC-C--C-CCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 272 IGVISSKR-L--P-YPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 272 ~~v~d~~~-L--p-~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
+...+... . . ...++||+|+++.++. .......++.-+.++|+|+|.++++.
T Consensus 101 v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y-~~~~~~~L~~tl~~ll~~~~~vl~~~ 156 (173)
T PF10294_consen 101 VRPLDWGDELDSDLLEPHSFDVILASDVLY-DEELFEPLVRTLKRLLKPNGKVLLAY 156 (173)
T ss_dssp EEE--TTS-HHHHHHS-SSBSEEEEES--S--GGGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred CcEEEecCcccccccccccCCEEEEecccc-hHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 55544322 1 1 2346899999999994 44456789999999999999977774
No 219
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.00 E-value=3.4e-06 Score=87.13 Aligned_cols=96 Identities=22% Similarity=0.229 Sum_probs=77.3
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCCCeeEEEecCcccccccC
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMY 302 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d 302 (629)
+..+||+|||.|-.+. .. ....+.|.|.+...+..|+..+.. ....+|+..+|+.+.+||.+++..++||+...
T Consensus 46 gsv~~d~gCGngky~~----~~-p~~~~ig~D~c~~l~~~ak~~~~~-~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~ 119 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLG----VN-PLCLIIGCDLCTGLLGGAKRSGGD-NVCRADALKLPFREESFDAALSIAVIHHLSTR 119 (293)
T ss_pred cceeeecccCCcccCc----CC-CcceeeecchhhhhccccccCCCc-eeehhhhhcCCCCCCccccchhhhhhhhhhhH
Confidence 3489999999996531 11 223567789999999988777653 55678899999999999999999999999754
Q ss_pred --HHHHHHHHHhcccCCcEEEEEe
Q 006834 303 --DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 303 --~~~~L~el~RvLKPGG~liis~ 324 (629)
...+++|+.|+|||||...+.+
T Consensus 120 ~RR~~~l~e~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 120 ERRERALEELLRVLRPGGNALVYV 143 (293)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEE
Confidence 4579999999999999987764
No 220
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.00 E-value=5e-06 Score=78.57 Aligned_cols=96 Identities=22% Similarity=0.404 Sum_probs=70.8
Q ss_pred EEEeecccchhHHhhhhC-C--CeEEEEecCCCCCCCchHHHHhh----cc--cceec-cccccCCC-CCcccceeeccc
Q 006834 482 NVMDMNAYLGGFAAAMSK-Y--PVWVMNVVPFHSNPDTLGAIYER----GL--IGTYQ-DWCEAFST-YPRTYDLIHASG 550 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~-~--~v~~mnv~~~~~~~~~l~~~~er----gl--i~~~~-~~~e~f~~-yp~t~Dl~H~~~ 550 (629)
+|||+|||+|-++-.|++ . +. +++.+|.++.+++.+.++ |+ +-.++ |+-+ ++. |+..||+|.+.+
T Consensus 6 ~iLDlGcG~G~~~~~l~~~~~~~~---~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~~~~~~~D~I~~~~ 81 (152)
T PF13847_consen 6 KILDLGCGTGRLLIQLAKELNPGA---KIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIED-LPQELEEKFDIIISNG 81 (152)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTTS---EEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTC-GCGCSSTTEEEEEEES
T ss_pred EEEEecCcCcHHHHHHHHhcCCCC---EEEEEECcHHHHHHhhcccccccccccceEEeehhc-cccccCCCeeEEEEcC
Confidence 699999999999999983 2 33 355567777888888773 55 34444 3323 221 447899999988
Q ss_pred cccccCCCcCHHHHHHHHhhcccCCcEEEEEeCH
Q 006834 551 VFSIYQDRCDITNILLEMDRILRPEGTVIFRDTV 584 (629)
Q Consensus 551 ~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~ 584 (629)
++ .+-.+.+.+|.+|-|.|+|||.+++++..
T Consensus 82 ~l---~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 82 VL---HHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TG---GGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred ch---hhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 88 34456678999999999999999999776
No 221
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.00 E-value=3.7e-05 Score=83.92 Aligned_cols=95 Identities=13% Similarity=0.075 Sum_probs=69.4
Q ss_pred CeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCCCC-CCCCCeeEEEecCccc
Q 006834 224 RTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKRLP-YPARAFDMAHCSGCLI 297 (629)
Q Consensus 224 ~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~Lp-~pd~sFDlV~~s~~L~ 297 (629)
.+|||+|||+|.++..++..+. .++++|+++.+++.|+++ +. ++.+..+|...+. ...++||+|++..-..
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~~---~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~ 311 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPDT---QLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRR 311 (374)
T ss_pred CEEEEccCCccHHHHHHhhcCC---eEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCC
Confidence 4899999999999999998764 456779999999999864 33 5788888875532 1224699999876442
Q ss_pred ccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 298 PWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 298 h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
.. ...++..+. .++|++.++++..
T Consensus 312 G~---~~~~l~~l~-~~~p~~ivyvsc~ 335 (374)
T TIGR02085 312 GI---GKELCDYLS-QMAPKFILYSSCN 335 (374)
T ss_pred CC---cHHHHHHHH-hcCCCeEEEEEeC
Confidence 22 244555554 4799999999853
No 222
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.97 E-value=3.5e-05 Score=75.54 Aligned_cols=116 Identities=18% Similarity=0.157 Sum_probs=76.3
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEe--------EEEeecCcHHHHHHHHHc----CC--CeE
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTM--------SFARRDTHEAQVQFALER----GV--PAM 271 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v--------~i~gvDiS~~~i~~A~er----g~--~~~ 271 (629)
......+..+....++. .|||--||+|++..+.+..+.... .+.|.|+++.+++.|+++ +. .+.
T Consensus 14 ~~lA~~ll~la~~~~~~--~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~ 91 (179)
T PF01170_consen 14 PTLAAALLNLAGWRPGD--VVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYID 91 (179)
T ss_dssp HHHHHHHHHHTT--TTS---EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEE
T ss_pred HHHHHHHHHHhCCCCCC--EEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceE
Confidence 45555666666655554 899999999999987766543322 267889999999999865 32 467
Q ss_pred EEEecCCCCCCCCCCeeEEEecCcccccccCH-------HHHHHHHHhcccCCcEEEEE
Q 006834 272 IGVISSKRLPYPARAFDMAHCSGCLIPWYMYD-------GLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 272 ~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d~-------~~~L~el~RvLKPGG~liis 323 (629)
+.+.|..++++.++++|.|+++.-+-.-.... ..++.++.++|++..++++.
T Consensus 92 ~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 92 FIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp EEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred EEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 88889999998888999999977442211111 24789999999994444444
No 223
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.95 E-value=7.7e-05 Score=79.65 Aligned_cols=95 Identities=17% Similarity=0.221 Sum_probs=63.3
Q ss_pred chHHHHHHHHhhcCcc------CCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc---C--C--Ce
Q 006834 204 GADAYIDNINELIPLT------GGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER---G--V--PA 270 (629)
Q Consensus 204 ga~~~i~~I~~lL~~~------~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er---g--~--~~ 270 (629)
++-.|+..+.+++... .+...++||||||+|.+...|+.+.. ...++++|+++.+++.|+++ + . .+
T Consensus 90 ~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~-~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I 168 (321)
T PRK11727 90 GRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEY-GWRFVGSDIDPQALASAQAIISANPGLNGAI 168 (321)
T ss_pred cHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhccCCcCcE
Confidence 3566777777776431 23456899999999988888876533 23678889999999999864 2 2 23
Q ss_pred EEEE-ecCCCCC----CCCCCeeEEEecCccccc
Q 006834 271 MIGV-ISSKRLP----YPARAFDMAHCSGCLIPW 299 (629)
Q Consensus 271 ~~~v-~d~~~Lp----~pd~sFDlV~~s~~L~h~ 299 (629)
.+.. .+...+. .+.+.||+|+|+.-++.-
T Consensus 169 ~~~~~~~~~~i~~~i~~~~~~fDlivcNPPf~~s 202 (321)
T PRK11727 169 RLRLQKDSKAIFKGIIHKNERFDATLCNPPFHAS 202 (321)
T ss_pred EEEEccchhhhhhcccccCCceEEEEeCCCCcCc
Confidence 3432 2222221 246789999999977443
No 224
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.94 E-value=2.7e-05 Score=82.77 Aligned_cols=96 Identities=18% Similarity=0.220 Sum_probs=65.9
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHH----cCCC--eEEEEecCCCCCCCCCCeeEEEecC--
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALE----RGVP--AMIGVISSKRLPYPARAFDMAHCSG-- 294 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~e----rg~~--~~~~v~d~~~Lp~pd~sFDlV~~s~-- 294 (629)
.++|||||||+|.++..-++.|.. .+.++|.|.-+ +.|.+ ++.. +.+..+..+.+-+|-.+.|+|++-+
T Consensus 61 dK~VlDVGcGtGILS~F~akAGA~--~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMG 137 (346)
T KOG1499|consen 61 DKTVLDVGCGTGILSMFAAKAGAR--KVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMG 137 (346)
T ss_pred CCEEEEcCCCccHHHHHHHHhCcc--eEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhh
Confidence 349999999999999999999854 44666777544 55553 4432 5566666666555578999999833
Q ss_pred -cccccccCHHHHHHHHHhcccCCcEEEE
Q 006834 295 -CLIPWYMYDGLYLLEVDRVLRPGGYWIL 322 (629)
Q Consensus 295 -~L~h~~~d~~~~L~el~RvLKPGG~lii 322 (629)
+|.+ ..-....|..=.+.|+|||.++=
T Consensus 138 y~Ll~-EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 138 YFLLY-ESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred HHHHH-hhhhhhhhhhhhhccCCCceEcc
Confidence 2211 11235567777899999998864
No 225
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=97.92 E-value=1.9e-05 Score=82.46 Aligned_cols=102 Identities=20% Similarity=0.334 Sum_probs=74.9
Q ss_pred ccCCCCeeEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHH----HHhhcccceeccccccCCCCCcccceeec
Q 006834 474 LFHKGRYRNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGA----IYERGLIGTYQDWCEAFSTYPRTYDLIHA 548 (629)
Q Consensus 474 ~~~~~~~R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~----~~ergli~~~~~~~e~f~~yp~t~Dl~H~ 548 (629)
.|++|.. |||+|||-|+.+.+++++ +|-| +.++.+++++.. +.++||-.-.+---+....++..||=|-+
T Consensus 69 ~L~~G~~--lLDiGCGWG~l~~~aA~~y~v~V---~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~fDrIvS 143 (283)
T COG2230 69 GLKPGMT--LLDIGCGWGGLAIYAAEEYGVTV---VGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPFDRIVS 143 (283)
T ss_pred CCCCCCE--EEEeCCChhHHHHHHHHHcCCEE---EEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccccceeee
Confidence 3778875 999999999999999887 6744 444444455544 56789853333222344555566999999
Q ss_pred cccccccCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006834 549 SGVFSIYQDRCDITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 549 ~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
.|+|..-.. -+.++++.-++++|+|||.+++-
T Consensus 144 vgmfEhvg~-~~~~~ff~~~~~~L~~~G~~llh 175 (283)
T COG2230 144 VGMFEHVGK-ENYDDFFKKVYALLKPGGRMLLH 175 (283)
T ss_pred hhhHHHhCc-ccHHHHHHHHHhhcCCCceEEEE
Confidence 999986544 36789999999999999999884
No 226
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.92 E-value=9.2e-05 Score=76.20 Aligned_cols=119 Identities=18% Similarity=0.204 Sum_probs=79.4
Q ss_pred hHHHHHHHHhhcCccC-CCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC----C--CeEEEEe--
Q 006834 205 ADAYIDNINELIPLTG-GNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG----V--PAMIGVI-- 275 (629)
Q Consensus 205 a~~~i~~I~~lL~~~~-g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg----~--~~~~~v~-- 275 (629)
++.+.+.+.+.+.... .....+||+|||+|.++..|+..-. ...++++|.|+.++..|.++. . .+.+...
T Consensus 130 TEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~m 208 (328)
T KOG2904|consen 130 TEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIM 208 (328)
T ss_pred HHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccc
Confidence 4556666666554321 1233799999999999999988755 346788899999999998762 1 1222211
Q ss_pred cC---CCCCCCCCCeeEEEecCcccccccCHH-------------------------HHHHHHHhcccCCcEEEEEe
Q 006834 276 SS---KRLPYPARAFDMAHCSGCLIPWYMYDG-------------------------LYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 276 d~---~~Lp~pd~sFDlV~~s~~L~h~~~d~~-------------------------~~L~el~RvLKPGG~liis~ 324 (629)
.. ...+...+.+|+++|+.-.+.-.+.++ .++.-+.|.|+|||.+++..
T Consensus 209 e~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~ 285 (328)
T KOG2904|consen 209 ESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLEL 285 (328)
T ss_pred ccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEe
Confidence 11 223355789999999775532221111 35667889999999999984
No 227
>PRK04148 hypothetical protein; Provisional
Probab=97.90 E-value=8.7e-05 Score=69.44 Aligned_cols=103 Identities=15% Similarity=0.008 Sum_probs=70.3
Q ss_pred HHHHHHhhcCccCCCCCeEEEeCCCCch-HHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCC-CC
Q 006834 208 YIDNINELIPLTGGNIRTAVDTGCGVAS-WGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYP-AR 285 (629)
Q Consensus 208 ~i~~I~~lL~~~~g~~~~VLDIGCGtG~-~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~p-d~ 285 (629)
..+.|.+.++... +.+|||||||.|. ++..|++.|..++ ++|+++..++.|++++. .+.+.|...-.+. -+
T Consensus 4 i~~~l~~~~~~~~--~~kileIG~GfG~~vA~~L~~~G~~Vi---aIDi~~~aV~~a~~~~~--~~v~dDlf~p~~~~y~ 76 (134)
T PRK04148 4 IAEFIAENYEKGK--NKKIVELGIGFYFKVAKKLKESGFDVI---VIDINEKAVEKAKKLGL--NAFVDDLFNPNLEIYK 76 (134)
T ss_pred HHHHHHHhccccc--CCEEEEEEecCCHHHHHHHHHCCCEEE---EEECCHHHHHHHHHhCC--eEEECcCCCCCHHHHh
Confidence 3445555554433 3589999999995 8889999887554 55999999999988874 5566666554433 36
Q ss_pred CeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEE
Q 006834 286 AFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 286 sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis 323 (629)
.+|+|.+.+.- .+....+.++.+-+ |.-+++.
T Consensus 77 ~a~liysirpp----~el~~~~~~la~~~--~~~~~i~ 108 (134)
T PRK04148 77 NAKLIYSIRPP----RDLQPFILELAKKI--NVPLIIK 108 (134)
T ss_pred cCCEEEEeCCC----HHHHHHHHHHHHHc--CCCEEEE
Confidence 79999987733 24445566666554 4555554
No 228
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.90 E-value=0.00011 Score=72.20 Aligned_cols=86 Identities=14% Similarity=0.048 Sum_probs=64.4
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC----CCeEEEEecCCCCCCCCCCeeEEEecCcccc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG----VPAMIGVISSKRLPYPARAFDMAHCSGCLIP 298 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg----~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h 298 (629)
+++|+|+|||||.++...+-.|.. .+.++|+++++++.++++. ..+.|.+.|..+.. ..||.++.+.-+--
T Consensus 46 g~~V~DlG~GTG~La~ga~~lGa~--~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~---~~~dtvimNPPFG~ 120 (198)
T COG2263 46 GKTVLDLGAGTGILAIGAALLGAS--RVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFR---GKFDTVIMNPPFGS 120 (198)
T ss_pred CCEEEEcCCCcCHHHHHHHhcCCc--EEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcC---CccceEEECCCCcc
Confidence 458999999999999999988865 4577899999999998763 46889988887654 56899998776533
Q ss_pred cccC-HHHHHHHHHhc
Q 006834 299 WYMY-DGLYLLEVDRV 313 (629)
Q Consensus 299 ~~~d-~~~~L~el~Rv 313 (629)
+... +..+|....++
T Consensus 121 ~~rhaDr~Fl~~Ale~ 136 (198)
T COG2263 121 QRRHADRPFLLKALEI 136 (198)
T ss_pred ccccCCHHHHHHHHHh
Confidence 3222 23455555554
No 229
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=97.89 E-value=2.2e-05 Score=81.66 Aligned_cols=129 Identities=12% Similarity=0.180 Sum_probs=83.1
Q ss_pred hhchhhHHHHHHHHHHHHHh-hcccCCCCeeEEEeecccchh----HHhhhhCCC----eEEEEecCCCCCCCchHHHHh
Q 006834 452 EKLREDNELWKDRMTYYKKI-DGLFHKGRYRNVMDMNAYLGG----FAAAMSKYP----VWVMNVVPFHSNPDTLGAIYE 522 (629)
Q Consensus 452 ~~f~~d~~~w~~~v~~y~~~-~~~~~~~~~R~vlD~~~g~Gg----faa~l~~~~----v~~mnv~~~~~~~~~l~~~~e 522 (629)
..|--|...|..-.+..... +.....+.--.|+|+|||+|- .|..|.+.. -|...|+.+|.++.+|..+.+
T Consensus 71 T~FfR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~ 150 (264)
T smart00138 71 TRFFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARA 150 (264)
T ss_pred CcccCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHc
Confidence 44777777777655443321 221222333579999999994 565555431 245578888988888887765
Q ss_pred hcccc-----------------------------------eeccccccCCCCC-cccceeeccccccccCCCcCHHHHHH
Q 006834 523 RGLIG-----------------------------------TYQDWCEAFSTYP-RTYDLIHASGVFSIYQDRCDITNILL 566 (629)
Q Consensus 523 rgli~-----------------------------------~~~~~~e~f~~yp-~t~Dl~H~~~~fs~~~~~c~~~~~l~ 566 (629)
|+.+ ..||..+ ..+| ..||+|.|..+|.... .-....++.
T Consensus 151 -~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~--~~~~~~~fD~I~crnvl~yf~-~~~~~~~l~ 226 (264)
T smart00138 151 -GIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLA--ESPPLGDFDLIFCRNVLIYFD-EPTQRKLLN 226 (264)
T ss_pred -CCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCC--CCCccCCCCEEEechhHHhCC-HHHHHHHHH
Confidence 2211 1223332 1233 8999999988876443 234567999
Q ss_pred HHhhcccCCcEEEEEeCH
Q 006834 567 EMDRILRPEGTVIFRDTV 584 (629)
Q Consensus 567 e~dRiLrPgG~~i~~d~~ 584 (629)
++.|+|+|||++++....
T Consensus 227 ~l~~~L~pGG~L~lg~~E 244 (264)
T smart00138 227 RFAEALKPGGYLFLGHSE 244 (264)
T ss_pred HHHHHhCCCeEEEEECcc
Confidence 999999999999997654
No 230
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=97.88 E-value=1.6e-05 Score=80.40 Aligned_cols=96 Identities=18% Similarity=0.301 Sum_probs=67.5
Q ss_pred EEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc-cceec-cccccCCCCCcccceeecccccccc
Q 006834 482 NVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL-IGTYQ-DWCEAFSTYPRTYDLIHASGVFSIY 555 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl-i~~~~-~~~e~f~~yp~t~Dl~H~~~~fs~~ 555 (629)
.|||+|||.|.++..|.+.+. +++-+|.++..+..+.++ ++ +.+.+ ++.+.....+..||+|.+..+|...
T Consensus 51 ~vLdiG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~ 127 (233)
T PRK05134 51 RVLDVGCGGGILSESMARLGA---DVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHV 127 (233)
T ss_pred eEEEeCCCCCHHHHHHHHcCC---eEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhcc
Confidence 599999999999999988753 456666665666666554 33 22222 2222211234789999997776644
Q ss_pred CCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 556 QDRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 556 ~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
. +...+|.++.|+|+|||.+++.+.
T Consensus 128 ~---~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 128 P---DPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred C---CHHHHHHHHHHHcCCCcEEEEEec
Confidence 3 557899999999999999999754
No 231
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.88 E-value=0.00017 Score=71.42 Aligned_cols=115 Identities=10% Similarity=-0.078 Sum_probs=74.8
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC--CeEEEEecCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV--PAMIGVISSKR 279 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~~~ 279 (629)
+...+.+...+... -.+.+|||++||+|.++..++.+|.. .++.+|.++.+++.++++ +. ++.+...|..+
T Consensus 34 ~~vrea~f~~l~~~-~~g~~vLDLfaGsG~lglea~srga~--~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~ 110 (189)
T TIGR00095 34 RVVRELFFNILRPE-IQGAHLLDVFAGSGLLGEEALSRGAK--VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALR 110 (189)
T ss_pred HHHHHHHHHHHHHh-cCCCEEEEecCCCcHHHHHHHhCCCC--EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHH
Confidence 44444555554321 12348999999999999999999874 457779999999988764 22 36777777633
Q ss_pred C-C-C-CC-CCeeEEEecCcccccccCHHHHHHHH--HhcccCCcEEEEEeC
Q 006834 280 L-P-Y-PA-RAFDMAHCSGCLIPWYMYDGLYLLEV--DRVLRPGGYWILSGP 325 (629)
Q Consensus 280 L-p-~-pd-~sFDlV~~s~~L~h~~~d~~~~L~el--~RvLKPGG~liis~P 325 (629)
. . + .. ..||+|+.-.-+.. . .....+..+ ..+|+++|.+++..+
T Consensus 111 ~l~~~~~~~~~~dvv~~DPPy~~-~-~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 111 ALKFLAKKPTFDNVIYLDPPFFN-G-ALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred HHHHhhccCCCceEEEECcCCCC-C-cHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 2 2 1 12 24788887654421 1 233444444 347999999988754
No 232
>PRK06922 hypothetical protein; Provisional
Probab=97.87 E-value=1.6e-05 Score=91.03 Aligned_cols=101 Identities=15% Similarity=0.192 Sum_probs=68.0
Q ss_pred eEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhhc----c-cceeccccccCCC-CC-cccceeeccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYERG----L-IGTYQDWCEAFST-YP-RTYDLIHASGVF 552 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~erg----l-i~~~~~~~e~f~~-yp-~t~Dl~H~~~~f 552 (629)
.+|||+|||+|.++.+|++. +- .+|+.+|.+..++..+.++- . +.+++.=+..++. +| .+||++.++.++
T Consensus 420 ~rVLDIGCGTG~ls~~LA~~~P~--~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 420 DTIVDVGAGGGVMLDMIEEETED--KRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred CEEEEeCCCCCHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence 36999999999998888754 21 46667777777888877652 1 1122211223332 44 899999876554
Q ss_pred ccc---C-------CCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 553 SIY---Q-------DRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 553 s~~---~-------~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
-.+ . +.-++..+|.++.|+|||||.++|.|.
T Consensus 498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 311 1 123567799999999999999999874
No 233
>PRK07402 precorrin-6B methylase; Provisional
Probab=97.87 E-value=0.00012 Score=72.31 Aligned_cols=109 Identities=17% Similarity=0.229 Sum_probs=64.8
Q ss_pred eEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHh----hcc--cceec-cccccCCCCCcccceeeccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYE----RGL--IGTYQ-DWCEAFSTYPRTYDLIHASGVF 552 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~e----rgl--i~~~~-~~~e~f~~yp~t~Dl~H~~~~f 552 (629)
.+|||+|||+|.++..++.. +- -.|+.+|.++.++..+.+ .|+ +-+++ |.-+.+...+..+|.++.++
T Consensus 42 ~~VLDiG~G~G~~~~~la~~~~~--~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~-- 117 (196)
T PRK07402 42 SVLWDIGAGTGTIPVEAGLLCPK--GRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEG-- 117 (196)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEEC--
Confidence 35999999999998887642 11 134445555456665543 344 22332 21122222223356655421
Q ss_pred cccCCCcCHHHHHHHHhhcccCCcEEEEEeCH-HHHHHHHHHHhcCC
Q 006834 553 SIYQDRCDITNILLEMDRILRPEGTVIFRDTV-EMLVKIRSITEGMR 598 (629)
Q Consensus 553 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~-~~~~~~~~~~~~l~ 598 (629)
...++.++.++.|+|+|||.+++.... +....+.+.++.+.
T Consensus 118 -----~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~ 159 (196)
T PRK07402 118 -----GRPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQ 159 (196)
T ss_pred -----CcCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcC
Confidence 235789999999999999999997543 34455666665553
No 234
>PRK04266 fibrillarin; Provisional
Probab=97.86 E-value=0.00014 Score=74.02 Aligned_cols=96 Identities=17% Similarity=0.135 Sum_probs=56.6
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHH----Hhhcccce-eccccccC--CCCCcccceee
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAI----YERGLIGT-YQDWCEAF--STYPRTYDLIH 547 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~----~ergli~~-~~~~~e~f--~~yp~t~Dl~H 547 (629)
+.++. .|||+|||+|++..+|++.-= --.|..+|.++.+++.+ .++.-+.. ..|-.+.. ...+.+||+|=
T Consensus 70 i~~g~--~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~ 146 (226)
T PRK04266 70 IKKGS--KVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIY 146 (226)
T ss_pred CCCCC--EEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEE
Confidence 56665 499999999999999987510 01344445555555533 33322222 22332211 12346788753
Q ss_pred ccccccccCCCcC---HHHHHHHHhhcccCCcEEEEE
Q 006834 548 ASGVFSIYQDRCD---ITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 548 ~~~~fs~~~~~c~---~~~~l~e~dRiLrPgG~~i~~ 581 (629)
++ -.+ ...+|.|+.|+|||||.++|+
T Consensus 147 ~d--------~~~p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 147 QD--------VAQPNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred EC--------CCChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 21 112 123578999999999999993
No 235
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.85 E-value=6e-05 Score=77.96 Aligned_cols=135 Identities=19% Similarity=0.315 Sum_probs=82.4
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh---cc---cceec-cccccCCCCC-cccceeeccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER---GL---IGTYQ-DWCEAFSTYP-RTYDLIHASGVF 552 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er---gl---i~~~~-~~~e~f~~yp-~t~Dl~H~~~~f 552 (629)
.+|||+|||.|.++.+|++..- ..+++.+|.++..+..+.+. ++ +.+++ |+ +...+ .+||+|-++--+
T Consensus 110 ~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~---~~~~~~~~fD~Iv~npPy 185 (275)
T PRK09328 110 LRVLDLGTGSGAIALALAKERP-DAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDW---FEPLPGGRFDLIVSNPPY 185 (275)
T ss_pred CEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccc---cCcCCCCceeEEEECCCc
Confidence 3699999999999999976520 12455556665666666654 22 22333 33 33334 789998775322
Q ss_pred ccc-------------C-------CC---cCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCCeEEEeecCCC
Q 006834 553 SIY-------------Q-------DR---CDITNILLEMDRILRPEGTVIFRDTVEMLVKIRSITEGMRWKSQIMDHESG 609 (629)
Q Consensus 553 s~~-------------~-------~~---c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~l~w~~~~~~~e~~ 609 (629)
... . .. -....++.++.++|+|||++++--.......++.++....+...... .+
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~~~l~~~gf~~v~~~-~d- 263 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRALLAAAGFADVETR-KD- 263 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHHHHHHHhCCCceeEEe-cC-
Confidence 110 0 00 11345888889999999999996544445667777776666532221 11
Q ss_pred CCCCceEEEEEe
Q 006834 610 PFNPEKILFAAK 621 (629)
Q Consensus 610 ~~~~e~~l~~~K 621 (629)
-.+.+++++++|
T Consensus 264 ~~~~~r~~~~~~ 275 (275)
T PRK09328 264 LAGRDRVVLGRR 275 (275)
T ss_pred CCCCceEEEEEC
Confidence 225788888765
No 236
>PRK14967 putative methyltransferase; Provisional
Probab=97.84 E-value=5.3e-05 Score=76.49 Aligned_cols=118 Identities=13% Similarity=0.251 Sum_probs=71.8
Q ss_pred EEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHh----hcc-cceec-cccccCCCCC-cccceeeccccccc
Q 006834 482 NVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYE----RGL-IGTYQ-DWCEAFSTYP-RTYDLIHASGVFSI 554 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----rgl-i~~~~-~~~e~f~~yp-~t~Dl~H~~~~fs~ 554 (629)
.|||+|||.|.++..++..+. -+|+.+|.++.++..+.+ .|+ +-+++ |+.+ ..+ ..||+|.++--|..
T Consensus 39 ~vLDlGcG~G~~~~~la~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~---~~~~~~fD~Vi~npPy~~ 113 (223)
T PRK14967 39 RVLDLCTGSGALAVAAAAAGA--GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR---AVEFRPFDVVVSNPPYVP 113 (223)
T ss_pred eEEEecCCHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh---hccCCCeeEEEECCCCCC
Confidence 599999999999999887653 245555665556665444 344 22222 3332 234 68999998643321
Q ss_pred cC------------------CCcCHHHHHHHHhhcccCCcEEEEEeC-HHHHHHHHHHHhcCCCeEEEe
Q 006834 555 YQ------------------DRCDITNILLEMDRILRPEGTVIFRDT-VEMLVKIRSITEGMRWKSQIM 604 (629)
Q Consensus 555 ~~------------------~~c~~~~~l~e~dRiLrPgG~~i~~d~-~~~~~~~~~~~~~l~w~~~~~ 604 (629)
.. ....++.++.++-|+|||||.+++-.. ......+.+.+++-.|+....
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~ 182 (223)
T PRK14967 114 APPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLDAEVV 182 (223)
T ss_pred CCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCCeEEE
Confidence 10 112256688899999999999998422 222334445555555655543
No 237
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=97.84 E-value=3.3e-05 Score=75.86 Aligned_cols=131 Identities=17% Similarity=0.196 Sum_probs=71.7
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCC-----CeEEEEecCCCCCCCchHHHHhhcccceeccccccC------CCCC-cc
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKY-----PVWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAF------STYP-RT 542 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~-----~v~~mnv~~~~~~~~~l~~~~ergli~~~~~~~e~f------~~yp-~t 542 (629)
+..+. +|||+|||+|+++.++.++ .|+..=+.|. . ...++--+..|..+.. ..+| .+
T Consensus 30 i~~g~--~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~------~---~~~~i~~~~~d~~~~~~~~~l~~~~~~~~ 98 (188)
T TIGR00438 30 IKPGD--TVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPM------K---PIENVDFIRGDFTDEEVLNKIRERVGDDK 98 (188)
T ss_pred cCCCC--EEEEecCCCCHHHHHHHHHhCCCceEEEEecccc------c---cCCCceEEEeeCCChhHHHHHHHHhCCCC
Confidence 45554 6999999999998877654 2444333331 1 0123211122433211 1244 67
Q ss_pred cceeecccccc------cc--CCCcCHHHHHHHHhhcccCCcEEEEEe-CH----HHHHHHHHHHhcCCCeEEEe-ecCC
Q 006834 543 YDLIHASGVFS------IY--QDRCDITNILLEMDRILRPEGTVIFRD-TV----EMLVKIRSITEGMRWKSQIM-DHES 608 (629)
Q Consensus 543 ~Dl~H~~~~fs------~~--~~~c~~~~~l~e~dRiLrPgG~~i~~d-~~----~~~~~~~~~~~~l~w~~~~~-~~e~ 608 (629)
||+|=+++... .. ...+.++.+|.++.|+|||||.+++.. .. +++..+++ .+ |.+.+. |.-.
T Consensus 99 ~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~---~~-~~~~~~~~~~~ 174 (188)
T TIGR00438 99 VDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRK---LF-EKVKVTKPQAS 174 (188)
T ss_pred ccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHh---hh-ceEEEeCCCCC
Confidence 99887754311 10 011234679999999999999999942 21 23333333 22 444433 3333
Q ss_pred CCCCCceEEEEE
Q 006834 609 GPFNPEKILFAA 620 (629)
Q Consensus 609 ~~~~~e~~l~~~ 620 (629)
.....|+.+||.
T Consensus 175 ~~~~~~~~~~~~ 186 (188)
T TIGR00438 175 RKRSAEVYIVAK 186 (188)
T ss_pred CcccceEEEEEe
Confidence 334579999985
No 238
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=97.84 E-value=4.7e-05 Score=76.21 Aligned_cols=124 Identities=14% Similarity=0.178 Sum_probs=76.0
Q ss_pred chhhHHHHHHHHHHHHHhhcccC-CCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc--c
Q 006834 454 LREDNELWKDRMTYYKKIDGLFH-KGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL--I 526 (629)
Q Consensus 454 f~~d~~~w~~~v~~y~~~~~~~~-~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl--i 526 (629)
|....++=..++......+.... ...-.+|||+|||.|.++..|.+.+. .++-+|.++..+..+.++ |+ +
T Consensus 19 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~ 95 (224)
T TIGR01983 19 FKPLHKMNPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGA---NVTGIDASEENIEVAKLHAKKDPLLKI 95 (224)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHHcCCCce
Confidence 44444443444554454443211 11234699999999999998877643 245555554566655543 33 2
Q ss_pred ceeccccccCC-CCCcccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 527 GTYQDWCEAFS-TYPRTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 527 ~~~~~~~e~f~-~yp~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
...+.-.+.+. ..|.+||+|.+.+++... .+.+.+|.++.++|+|||.+++++.
T Consensus 96 ~~~~~d~~~~~~~~~~~~D~i~~~~~l~~~---~~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 96 EYRCTSVEDLAEKGAKSFDVVTCMEVLEHV---PDPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred EEEeCCHHHhhcCCCCCccEEEehhHHHhC---CCHHHHHHHHHHhcCCCcEEEEEec
Confidence 22221111222 235789999987766533 4568899999999999999999753
No 239
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=97.83 E-value=1.9e-05 Score=84.91 Aligned_cols=116 Identities=16% Similarity=0.155 Sum_probs=77.6
Q ss_pred eEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhhcc---cceeccccccCCCCC-cccceeecccccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYERGL---IGTYQDWCEAFSTYP-RTYDLIHASGVFSIY 555 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~ergl---i~~~~~~~e~f~~yp-~t~Dl~H~~~~fs~~ 555 (629)
..|||+|||+|.++..+++. +- .++.-+|.+++++..+.++.- +.+.+.=.+.+ .++ .+||+|-+.+++...
T Consensus 115 ~~VLDLGcGtG~~~l~La~~~~~--~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~l-p~~~~sFDvVIs~~~L~~~ 191 (340)
T PLN02490 115 LKVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDL-PFPTDYADRYVSAGSIEYW 191 (340)
T ss_pred CEEEEEecCCcHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhC-CCCCCceeEEEEcChhhhC
Confidence 36999999999998887653 21 245556666678888877531 23333111222 244 799998887766544
Q ss_pred CCCcCHHHHHHHHhhcccCCcEEEEEeCHH-----------------HHHHHHHHHhcCCCeEE
Q 006834 556 QDRCDITNILLEMDRILRPEGTVIFRDTVE-----------------MLVKIRSITEGMRWKSQ 602 (629)
Q Consensus 556 ~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~-----------------~~~~~~~~~~~l~w~~~ 602 (629)
. +.+.+|.|+-|+|||||.+++.+... ..+.+.++++...++..
T Consensus 192 ~---d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V 252 (340)
T PLN02490 192 P---DPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDV 252 (340)
T ss_pred C---CHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEE
Confidence 4 44789999999999999998864321 13556667777777654
No 240
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=97.83 E-value=3.7e-05 Score=83.82 Aligned_cols=118 Identities=15% Similarity=0.145 Sum_probs=74.7
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHH----HHhhcc--cceec-cccccCCCCC-cccceeeccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGA----IYERGL--IGTYQ-DWCEAFSTYP-RTYDLIHASGVF 552 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~----~~ergl--i~~~~-~~~e~f~~yp-~t~Dl~H~~~~f 552 (629)
..+||+|||.|.|..+|+.+.= -.|++.+|-....+.. +.++|+ +-+++ |.-+-+..+| .++|.|++. |
T Consensus 124 p~vLEIGcGsG~~ll~lA~~~P-~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~ln--F 200 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAKNNP-NKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVH--F 200 (390)
T ss_pred CeEEEEcCcccHHHHHHHHhCC-CCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEe--C
Confidence 3699999999999999987520 0255666665445443 445565 33333 2212233456 899999874 4
Q ss_pred cc-c-C---CCcCHHHHHHHHhhcccCCcEEEE-EeCHHHHHHHHHHHhcC-CCeE
Q 006834 553 SI-Y-Q---DRCDITNILLEMDRILRPEGTVIF-RDTVEMLVKIRSITEGM-RWKS 601 (629)
Q Consensus 553 s~-~-~---~~c~~~~~l~e~dRiLrPgG~~i~-~d~~~~~~~~~~~~~~l-~w~~ 601 (629)
.. | + .|=..+.+|.|+-|+|+|||.+.| ||..+....+.+.+... +++.
T Consensus 201 PdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~~~~~~ 256 (390)
T PRK14121 201 PVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKLPKAKI 256 (390)
T ss_pred CCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhCCCcee
Confidence 32 1 1 112236799999999999999998 57777666655554443 4443
No 241
>PLN02823 spermine synthase
Probab=97.83 E-value=0.0001 Score=79.21 Aligned_cols=101 Identities=18% Similarity=0.158 Sum_probs=73.3
Q ss_pred CCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC---------CCeEEEEecCCCC-CCCCCCeeEEE
Q 006834 222 NIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG---------VPAMIGVISSKRL-PYPARAFDMAH 291 (629)
Q Consensus 222 ~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg---------~~~~~~v~d~~~L-p~pd~sFDlV~ 291 (629)
.+++||.||+|.|..+.++++... ...++.+|+++++++.|++.. .++.+...|.... ....++||+|+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~-~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKT-VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCC-CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 456899999999999999988642 235677899999999998642 3567777776543 33457899999
Q ss_pred ecCccccccc------CHHHHHH-HHHhcccCCcEEEEEe
Q 006834 292 CSGCLIPWYM------YDGLYLL-EVDRVLRPGGYWILSG 324 (629)
Q Consensus 292 ~s~~L~h~~~------d~~~~L~-el~RvLKPGG~liis~ 324 (629)
+-. ..++.. ....+++ .+.+.|+|||.+++..
T Consensus 182 ~D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 182 GDL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred ecC-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 752 222210 1246777 8999999999988753
No 242
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.83 E-value=5.3e-05 Score=85.83 Aligned_cols=101 Identities=13% Similarity=0.081 Sum_probs=77.4
Q ss_pred CCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCCC--CCCCCCeeEEEecC
Q 006834 222 NIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKRL--PYPARAFDMAHCSG 294 (629)
Q Consensus 222 ~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~L--p~pd~sFDlV~~s~ 294 (629)
....+||||||.|.++..++...+.. .+.|+|++...+..|.++ +. ++.+...+...+ -++++++|.|+..+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~-~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDA-LFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILF 425 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCC-CEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEEC
Confidence 34589999999999999999998754 677889999887776643 33 555655554323 26789999999877
Q ss_pred cccccccCH--------HHHHHHHHhcccCCcEEEEEe
Q 006834 295 CLIPWYMYD--------GLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 295 ~L~h~~~d~--------~~~L~el~RvLKPGG~liis~ 324 (629)
.= +|+... ..++..+.++|||||.+.+.+
T Consensus 426 PD-PWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 426 PD-PWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred CC-CCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 55 775331 369999999999999999984
No 243
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=97.83 E-value=2.6e-05 Score=77.31 Aligned_cols=115 Identities=19% Similarity=0.254 Sum_probs=73.7
Q ss_pred EEEeecccchhHHhhhhCCCeEEEEecCCCCCC----CchHHHHhhcccceeccccccCCC--CCcccceeecccccccc
Q 006834 482 NVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNP----DTLGAIYERGLIGTYQDWCEAFST--YPRTYDLIHASGVFSIY 555 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~----~~l~~~~ergli~~~~~~~e~f~~--yp~t~Dl~H~~~~fs~~ 555 (629)
.|||+|||-|--|.+|+++|.-|. .+|.+. ....++-++||- ++-++..+.+ +|..||+|.+..||-..
T Consensus 33 ~~LDlgcG~GRNalyLA~~G~~Vt---AvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~~~yD~I~st~v~~fL 107 (192)
T PF03848_consen 33 KALDLGCGEGRNALYLASQGFDVT---AVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFPEEYDFIVSTVVFMFL 107 (192)
T ss_dssp EEEEES-TTSHHHHHHHHTT-EEE---EEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-TTTEEEEEEESSGGGS
T ss_pred cEEEcCCCCcHHHHHHHHCCCeEE---EEECCHHHHHHHHHHHhhcCce--eEEEEecchhccccCCcCEEEEEEEeccC
Confidence 499999999999999999987433 333332 234445567772 2222333332 46899999987777655
Q ss_pred CCCcCHHHHHHHHhhcccCCcEEEEEe-----------CHHH---HHHHHHHHhcCCCeEEEe
Q 006834 556 QDRCDITNILLEMDRILRPEGTVIFRD-----------TVEM---LVKIRSITEGMRWKSQIM 604 (629)
Q Consensus 556 ~~~c~~~~~l~e~dRiLrPgG~~i~~d-----------~~~~---~~~~~~~~~~l~w~~~~~ 604 (629)
+ +-.++.++..|-.-|+|||++++-. +.+. -.+|...+. .|++..+
T Consensus 108 ~-~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~~~~f~~~~~EL~~~y~--dW~il~y 167 (192)
T PF03848_consen 108 Q-RELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPSPFPFLLKPGELREYYA--DWEILKY 167 (192)
T ss_dssp --GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--S--B-TTHHHHHTT--TSEEEEE
T ss_pred C-HHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCCCCCcccCHHHHHHHhC--CCeEEEE
Confidence 4 5588999999999999999988831 1122 245666666 4998644
No 244
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=97.82 E-value=2.3e-05 Score=77.53 Aligned_cols=115 Identities=14% Similarity=0.160 Sum_probs=72.4
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHh----hcc--cceeccccccCC--CCC-cccceeecccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYE----RGL--IGTYQDWCEAFS--TYP-RTYDLIHASGV 551 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----rgl--i~~~~~~~e~f~--~yp-~t~Dl~H~~~~ 551 (629)
..|||+|||.|.|+.+|+.+.- -.||+.+|.+..++..+.+ .|+ +-+.+.=...+. .+| .++|.|+++.-
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p-~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~p 96 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNP-DKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFP 96 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECC
Confidence 4699999999999999987621 1366666766666666543 344 223321111111 245 58998876321
Q ss_pred ---cc--ccCCCcCHHHHHHHHhhcccCCcEEEEE-eCHHHHHHHHHHHhc
Q 006834 552 ---FS--IYQDRCDITNILLEMDRILRPEGTVIFR-DTVEMLVKIRSITEG 596 (629)
Q Consensus 552 ---fs--~~~~~c~~~~~l~e~dRiLrPgG~~i~~-d~~~~~~~~~~~~~~ 596 (629)
+. ..+.|...+.+|.++-|+|||||.+++. |..+....+.+.+..
T Consensus 97 dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~ 147 (194)
T TIGR00091 97 DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSE 147 (194)
T ss_pred CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 11 1124555688999999999999999985 666656655555444
No 245
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=97.80 E-value=0.00084 Score=70.56 Aligned_cols=130 Identities=17% Similarity=0.232 Sum_probs=76.4
Q ss_pred EEEeecccchhHHhhhhCCC-e--EEE---EecCCCCCCCchHHHHhhcccceeccccccCCCCCcccceeecccccccc
Q 006834 482 NVMDMNAYLGGFAAAMSKYP-V--WVM---NVVPFHSNPDTLGAIYERGLIGTYQDWCEAFSTYPRTYDLIHASGVFSIY 555 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~~-v--~~m---nv~~~~~~~~~l~~~~ergli~~~~~~~e~f~~yp~t~Dl~H~~~~fs~~ 555 (629)
+|+|+|||+|-.|+.|++.. . ++| |...++....++..+.=.+. -+++ .--++.-...||+|=++==|-..
T Consensus 161 ~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~-~v~~--s~~~~~v~~kfd~IisNPPfh~G 237 (300)
T COG2813 161 KVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENT-EVWA--SNLYEPVEGKFDLIISNPPFHAG 237 (300)
T ss_pred cEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCcc-EEEE--ecccccccccccEEEeCCCccCC
Confidence 79999999999999998773 2 333 22222222122222211111 2343 13345555699997776666543
Q ss_pred CCCc--CHHHHHHHHhhcccCCcEEEEEeC--HHHHHHHHHHHhcCCCeEEEeecCCCCCCCceEEEEEec
Q 006834 556 QDRC--DITNILLEMDRILRPEGTVIFRDT--VEMLVKIRSITEGMRWKSQIMDHESGPFNPEKILFAAKT 622 (629)
Q Consensus 556 ~~~c--~~~~~l~e~dRiLrPgG~~i~~d~--~~~~~~~~~~~~~l~w~~~~~~~e~~~~~~e~~l~~~K~ 622 (629)
+.-- -.+.++.+.-+-|++||.++|=-+ ..+..+|+++.. ++.++... +.-|||=++|.
T Consensus 238 ~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~Fg----~v~~la~~----~gf~Vl~a~k~ 300 (300)
T COG2813 238 KAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELFG----NVEVLAKN----GGFKVLRAKKA 300 (300)
T ss_pred cchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhcC----CEEEEEeC----CCEEEEEEecC
Confidence 3221 123588899999999999988543 335666777665 45554433 35677777763
No 246
>PRK06202 hypothetical protein; Provisional
Probab=97.79 E-value=7.4e-05 Score=75.72 Aligned_cols=102 Identities=13% Similarity=0.241 Sum_probs=69.6
Q ss_pred CCeeEEEeecccchhHHhhhhC----CCeEEEEecCCCCCCCchHHHHhhcc---cceeccccccCCCCCcccceeeccc
Q 006834 478 GRYRNVMDMNAYLGGFAAAMSK----YPVWVMNVVPFHSNPDTLGAIYERGL---IGTYQDWCEAFSTYPRTYDLIHASG 550 (629)
Q Consensus 478 ~~~R~vlD~~~g~Ggfaa~l~~----~~v~~mnv~~~~~~~~~l~~~~ergl---i~~~~~~~e~f~~yp~t~Dl~H~~~ 550 (629)
..-.+|||+|||+|.++..|++ .+. -.+|+.+|.+++++..+.++.- +.....=++.++.-+.+||+|-++.
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~ 137 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGL-RLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNH 137 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCC-CcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECC
Confidence 3446799999999999888864 221 2467888888889999887732 1112111244444458999999987
Q ss_pred cccccCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 551 VFSIYQDRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 551 ~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
+|....+. .+..+|.||-|+|| |.+++.|.
T Consensus 138 ~lhh~~d~-~~~~~l~~~~r~~~--~~~~i~dl 167 (232)
T PRK06202 138 FLHHLDDA-EVVRLLADSAALAR--RLVLHNDL 167 (232)
T ss_pred eeecCChH-HHHHHHHHHHHhcC--eeEEEecc
Confidence 77544332 35679999999999 56666553
No 247
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.77 E-value=0.0001 Score=77.90 Aligned_cols=84 Identities=15% Similarity=0.119 Sum_probs=64.7
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C--CCeEEEEecCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G--VPAMIGVISSKR 279 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g--~~~~~~v~d~~~ 279 (629)
...++.|.+.+...++. +|||||||+|.++..|++.+.. ++++|+++.+++.++++ + .++.+...|...
T Consensus 22 ~~i~~~Iv~~~~~~~~~--~VLEIG~G~G~LT~~Ll~~~~~---V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~ 96 (294)
T PTZ00338 22 PLVLDKIVEKAAIKPTD--TVLEIGPGTGNLTEKLLQLAKK---VIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALK 96 (294)
T ss_pred HHHHHHHHHhcCCCCcC--EEEEecCchHHHHHHHHHhCCc---EEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhh
Confidence 44566777766655444 8999999999999999998654 56669999999999874 1 357888888877
Q ss_pred CCCCCCCeeEEEecCcc
Q 006834 280 LPYPARAFDMAHCSGCL 296 (629)
Q Consensus 280 Lp~pd~sFDlV~~s~~L 296 (629)
.+++ .||+|+++..+
T Consensus 97 ~~~~--~~d~VvaNlPY 111 (294)
T PTZ00338 97 TEFP--YFDVCVANVPY 111 (294)
T ss_pred hccc--ccCEEEecCCc
Confidence 6653 68999987655
No 248
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=97.77 E-value=2.3e-05 Score=79.32 Aligned_cols=115 Identities=20% Similarity=0.100 Sum_probs=73.3
Q ss_pred CCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcccceeccccccCC--------CCCcccceeecc
Q 006834 478 GRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAFS--------TYPRTYDLIHAS 549 (629)
Q Consensus 478 ~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergli~~~~~~~e~f~--------~yp~t~Dl~H~~ 549 (629)
..-|.++|+|||.| +|+..+.-- --+|+.+|-++.||+++.+.=- -+||.=-.+++ --+++.|||-|.
T Consensus 32 ~~h~~a~DvG~G~G-qa~~~iae~--~k~VIatD~s~~mL~~a~k~~~-~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~A 107 (261)
T KOG3010|consen 32 EGHRLAWDVGTGNG-QAARGIAEH--YKEVIATDVSEAMLKVAKKHPP-VTYCHTPSTMSSDEMVDLLGGEESVDLITAA 107 (261)
T ss_pred CCcceEEEeccCCC-cchHHHHHh--hhhheeecCCHHHHHHhhcCCC-cccccCCccccccccccccCCCcceeeehhh
Confidence 44568999999999 666654432 2577888888889996655433 34443322333 236899995441
Q ss_pred ccccccCCCcCHHHHHHHHhhcccCCcEEEE----EeCHHHHHHHHHHHhcCCCe
Q 006834 550 GVFSIYQDRCDITNILLEMDRILRPEGTVIF----RDTVEMLVKIRSITEGMRWK 600 (629)
Q Consensus 550 ~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~----~d~~~~~~~~~~~~~~l~w~ 600 (629)
- --|=|+++.++.++.|||||.|-+|. +|..-...++..+..++.|+
T Consensus 108 q----a~HWFdle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~~ 158 (261)
T KOG3010|consen 108 Q----AVHWFDLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYDS 158 (261)
T ss_pred h----hHHhhchHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhhc
Confidence 0 01228899999999999999882221 44444455555666666664
No 249
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.75 E-value=0.0002 Score=78.33 Aligned_cols=98 Identities=13% Similarity=0.138 Sum_probs=72.0
Q ss_pred CeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCCCCCCCCCeeEEEecCcccc
Q 006834 224 RTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKRLPYPARAFDMAHCSGCLIP 298 (629)
Q Consensus 224 ~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h 298 (629)
.+|||++||+|.++..++.... ...++++|+++.+++.++++ +. +..+...|...+....+.||+|+...
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP---- 133 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP---- 133 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC----
Confidence 3799999999999999976532 22567789999999999864 33 34566677654322146799999754
Q ss_pred cccCHHHHHHHHHhcccCCcEEEEEeCCC
Q 006834 299 WYMYDGLYLLEVDRVLRPGGYWILSGPPI 327 (629)
Q Consensus 299 ~~~d~~~~L~el~RvLKPGG~liis~P~~ 327 (629)
+ ..+..++....+.+++||++.++....
T Consensus 134 ~-Gs~~~~l~~al~~~~~~gilyvSAtD~ 161 (382)
T PRK04338 134 F-GSPAPFLDSAIRSVKRGGLLCVTATDT 161 (382)
T ss_pred C-CCcHHHHHHHHHHhcCCCEEEEEecCc
Confidence 1 245678888788899999999986533
No 250
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=97.72 E-value=6.6e-05 Score=75.17 Aligned_cols=95 Identities=16% Similarity=0.252 Sum_probs=68.6
Q ss_pred eEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhhcc-cceeccccccCCCCC-cccceeeccccccccCC
Q 006834 481 RNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYERGL-IGTYQDWCEAFSTYP-RTYDLIHASGVFSIYQD 557 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~ergl-i~~~~~~~e~f~~yp-~t~Dl~H~~~~fs~~~~ 557 (629)
..|||+|||+|.+..+|.+. +- .++..+|.++.+++.+.++.- +.+.+. ..+.+++ ++||+|-+.+++....
T Consensus 45 ~~VLDiGCG~G~~~~~L~~~~~~--~~v~giDiS~~~l~~A~~~~~~~~~~~~--d~~~~~~~~sfD~V~~~~vL~hl~- 119 (204)
T TIGR03587 45 ASILELGANIGMNLAALKRLLPF--KHIYGVEINEYAVEKAKAYLPNINIIQG--SLFDPFKDNFFDLVLTKGVLIHIN- 119 (204)
T ss_pred CcEEEEecCCCHHHHHHHHhCCC--CeEEEEECCHHHHHHHHhhCCCCcEEEe--eccCCCCCCCEEEEEECChhhhCC-
Confidence 45999999999999999875 22 356677777789998877521 233321 1233455 8999999999887553
Q ss_pred CcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 558 RCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 558 ~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
.-.+..+|.||.|++ +++++|.+
T Consensus 120 p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 120 PDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred HHHHHHHHHHHHhhc--CcEEEEEE
Confidence 346788999999998 57888864
No 251
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=97.72 E-value=0.00014 Score=73.04 Aligned_cols=132 Identities=18% Similarity=0.225 Sum_probs=71.1
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCC-----CeEEEEecCCCCCCCchHHHHhhcccceec-cccccC------CCCC-c
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKY-----PVWVMNVVPFHSNPDTLGAIYERGLIGTYQ-DWCEAF------STYP-R 541 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~-----~v~~mnv~~~~~~~~~l~~~~ergli~~~~-~~~e~f------~~yp-~ 541 (629)
+..+. +|||+|||+|++...|++. .|..+-+.|. .+. .|+ -+++ |..+.- ..++ .
T Consensus 49 ~~~~~--~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~------~~~---~~v-~~i~~D~~~~~~~~~i~~~~~~~ 116 (209)
T PRK11188 49 FKPGM--TVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM------DPI---VGV-DFLQGDFRDELVLKALLERVGDS 116 (209)
T ss_pred CCCCC--EEEEEcccCCHHHHHHHHHcCCCceEEEEecccc------cCC---CCc-EEEecCCCChHHHHHHHHHhCCC
Confidence 34443 6999999999999888765 2333333331 110 122 2222 222110 0133 6
Q ss_pred ccceeeccccccccCCC--------cCHHHHHHHHhhcccCCcEEEEEeCH-----HHHHHHHHHHhcCCCeEEEeecCC
Q 006834 542 TYDLIHASGVFSIYQDR--------CDITNILLEMDRILRPEGTVIFRDTV-----EMLVKIRSITEGMRWKSQIMDHES 608 (629)
Q Consensus 542 t~Dl~H~~~~fs~~~~~--------c~~~~~l~e~dRiLrPgG~~i~~d~~-----~~~~~~~~~~~~l~w~~~~~~~e~ 608 (629)
+||+|-++......... ...+.+|.++-|+|||||.|++..-. +.+..+++....... +-+...
T Consensus 117 ~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~~f~~v~~---~Kp~ss 193 (209)
T PRK11188 117 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKV---RKPDSS 193 (209)
T ss_pred CCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHhCceEEEE---ECCccc
Confidence 89999886532221111 11356899999999999999995322 233333332222222 223333
Q ss_pred CCCCCceEEEEEe
Q 006834 609 GPFNPEKILFAAK 621 (629)
Q Consensus 609 ~~~~~e~~l~~~K 621 (629)
-.-..|..+||..
T Consensus 194 r~~s~e~~~~~~~ 206 (209)
T PRK11188 194 RARSREVYIVATG 206 (209)
T ss_pred cccCceeEEEeec
Confidence 3445788888864
No 252
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=97.72 E-value=0.00011 Score=74.97 Aligned_cols=121 Identities=20% Similarity=0.314 Sum_probs=75.4
Q ss_pred ccCCCCeeEEEeecccchhHHhhhhCCCeEE------EEecCCCCCCCchHHHHhhc----cccee-ccc----cccCCC
Q 006834 474 LFHKGRYRNVMDMNAYLGGFAAAMSKYPVWV------MNVVPFHSNPDTLGAIYERG----LIGTY-QDW----CEAFST 538 (629)
Q Consensus 474 ~~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~------mnv~~~~~~~~~l~~~~erg----li~~~-~~~----~e~f~~ 538 (629)
.++++.--.||||++|+|-.|..+.++ |-. -+|.-.|-+++||.+..+|- |-.-- .-| .|.++
T Consensus 95 ~L~p~~~m~~lDvaGGTGDiaFril~~-v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~Lp- 172 (296)
T KOG1540|consen 95 KLGPGKGMKVLDVAGGTGDIAFRILRH-VKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLP- 172 (296)
T ss_pred ccCCCCCCeEEEecCCcchhHHHHHHh-hccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCC-
Confidence 455655577999999999888877654 111 22222333447888877765 42210 112 25666
Q ss_pred CC-cccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCHHHH-HHHHHHHhcCCC
Q 006834 539 YP-RTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTVEML-VKIRSITEGMRW 599 (629)
Q Consensus 539 yp-~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~-~~~~~~~~~l~w 599 (629)
|| .+||+.-.. |+.. +--+++..|.|+.|||+|||.|.+-+-..+. ..|+.+++.---
T Consensus 173 Fdd~s~D~yTia--fGIR-N~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf 232 (296)
T KOG1540|consen 173 FDDDSFDAYTIA--FGIR-NVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSF 232 (296)
T ss_pred CCCCcceeEEEe--ccee-cCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhh
Confidence 77 999985431 2210 1134689999999999999999987665544 456665554333
No 253
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=97.71 E-value=4.4e-05 Score=77.51 Aligned_cols=95 Identities=14% Similarity=0.253 Sum_probs=72.3
Q ss_pred EEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcccceec-ccc----ccCCCCCcccceeeccccccccCC
Q 006834 483 VMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGLIGTYQ-DWC----EAFSTYPRTYDLIHASGVFSIYQD 557 (629)
Q Consensus 483 vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergli~~~~-~~~----e~f~~yp~t~Dl~H~~~~fs~~~~ 557 (629)
|||+|||-|.++..|+..+ -+|..+|..+..++++..+.+.+-+. +|= |.+..==.+||.|-|..|....
T Consensus 63 vLDvGCGgG~Lse~mAr~G---a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv-- 137 (243)
T COG2227 63 VLDVGCGGGILSEPLARLG---ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHV-- 137 (243)
T ss_pred EEEecCCccHhhHHHHHCC---CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHcc--
Confidence 9999999999999999999 58899999999999998777743322 110 1110000589988886666544
Q ss_pred CcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 558 RCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 558 ~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
-+.+.++.+..+.|||||.++++..
T Consensus 138 -~dp~~~~~~c~~lvkP~G~lf~STi 162 (243)
T COG2227 138 -PDPESFLRACAKLVKPGGILFLSTI 162 (243)
T ss_pred -CCHHHHHHHHHHHcCCCcEEEEecc
Confidence 4558899999999999999999854
No 254
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=97.71 E-value=8.3e-05 Score=74.59 Aligned_cols=98 Identities=24% Similarity=0.262 Sum_probs=63.9
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhc----c---cceec-cccccCCCCCcccceeeccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERG----L---IGTYQ-DWCEAFSTYPRTYDLIHASGVF 552 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~erg----l---i~~~~-~~~e~f~~yp~t~Dl~H~~~~f 552 (629)
..|||+|||.|.++..+++..--.-+++.+|.+++.+..+.++- + +.+++ |.. .+..=+.+||+|.+..++
T Consensus 53 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~D~I~~~~~l 131 (239)
T PRK00216 53 DKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAE-ALPFPDNSFDAVTIAFGL 131 (239)
T ss_pred CeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccc-cCCCCCCCccEEEEeccc
Confidence 36999999999999888765200124455555556666665541 2 23333 211 122113789999886554
Q ss_pred cccCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 553 SIYQDRCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 553 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
. ...+.+.+|.++.++|+|||.+++.+
T Consensus 132 ~---~~~~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 132 R---NVPDIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred c---cCCCHHHHHHHHHHhccCCcEEEEEE
Confidence 3 34567889999999999999999854
No 255
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=97.70 E-value=7.3e-05 Score=62.93 Aligned_cols=95 Identities=21% Similarity=0.312 Sum_probs=62.5
Q ss_pred EEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHH---hhcc---cceec-cccccCCC-CCcccceeecccccc
Q 006834 482 NVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIY---ERGL---IGTYQ-DWCEAFST-YPRTYDLIHASGVFS 553 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~---ergl---i~~~~-~~~e~f~~-yp~t~Dl~H~~~~fs 553 (629)
+|+|+|||.|++...+.+.+. .++...|.+++.+..+. +.+. +-.++ |+. .+.. -+..||++.+++.+.
T Consensus 1 ~ildig~G~G~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~i~~~~~~~ 77 (107)
T cd02440 1 RVLDLGCGTGALALALASGPG--ARVTGVDISPVALELARKAAAALLADNVEVLKGDAE-ELPPEADESFDVIISDPPLH 77 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCC--CEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChh-hhccccCCceEEEEEcccee
Confidence 489999999999999987432 34444454434444443 1121 33343 222 2222 347899999988876
Q ss_pred ccCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006834 554 IYQDRCDITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 554 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
.. .-....++..+.+.|||||.+++.
T Consensus 78 ~~--~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 78 HL--VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eh--hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 53 235577999999999999999987
No 256
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=97.69 E-value=0.00013 Score=74.04 Aligned_cols=118 Identities=21% Similarity=0.328 Sum_probs=77.3
Q ss_pred eEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHh----hcc--cceeccccccCCCCC-cccceeeccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYE----RGL--IGTYQDWCEAFSTYP-RTYDLIHASGVF 552 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~e----rgl--i~~~~~~~e~f~~yp-~t~Dl~H~~~~f 552 (629)
.+|||+|||.|.++.+|++. +- .+++.+|..+.++..+.+ .|+ +-+++ +..+..++ .+||+|-++--|
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~~~--~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~--~d~~~~~~~~~fD~Vi~npPy 164 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKERPD--ARVTAVDISPEALAVARKNAARLGLDNVTFLQ--SDWFEPLPGGKFDLIVSNPPY 164 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEE--CchhccCcCCceeEEEECCCC
Confidence 36999999999999999875 21 245555655556665543 344 22332 12234454 789999886544
Q ss_pred cccC------CCc-----------------CHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCCeEE
Q 006834 553 SIYQ------DRC-----------------DITNILLEMDRILRPEGTVIFRDTVEMLVKIRSITEGMRWKSQ 602 (629)
Q Consensus 553 s~~~------~~c-----------------~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~l~w~~~ 602 (629)
.... ... ....++.++-|+|+|||.+++.........++++++...+...
T Consensus 165 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~~gf~~v 237 (251)
T TIGR03534 165 IPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAGFADV 237 (251)
T ss_pred CchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHhCCCCce
Confidence 4211 000 0235788999999999999998766566778888887777644
No 257
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.68 E-value=0.00014 Score=75.08 Aligned_cols=97 Identities=10% Similarity=-0.057 Sum_probs=69.8
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C--CCeEEEEecCCC-CC-C-----CCCCeeE
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G--VPAMIGVISSKR-LP-Y-----PARAFDM 289 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g--~~~~~~v~d~~~-Lp-~-----pd~sFDl 289 (629)
.++|||||+++|.-+.+|+..-.....++.+|.+++..+.|++. | ..+.+..+++.. ++ + ..++||+
T Consensus 80 ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~ 159 (247)
T PLN02589 80 AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDF 159 (247)
T ss_pred CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccE
Confidence 34899999999999999987533233567779999999998754 3 346777776533 22 1 1368999
Q ss_pred EEecCcccccccCHHHHHHHHHhcccCCcEEEEE
Q 006834 290 AHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 290 V~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis 323 (629)
|+.-. ....-..++..+.+.|+|||.+++.
T Consensus 160 iFiDa----dK~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 160 IFVDA----DKDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred EEecC----CHHHhHHHHHHHHHhcCCCeEEEEc
Confidence 99643 2223356788889999999998875
No 258
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.68 E-value=0.00053 Score=71.54 Aligned_cols=202 Identities=20% Similarity=0.230 Sum_probs=120.8
Q ss_pred CCCCCCCCCCCccccccccCCCcchhhhhhcCccEeecCCeeeecCCCCCCCCchHHHHHHHHhhcCc--cCCCCCeEEE
Q 006834 151 KYKTPFKWPQSRDYAWYDNIPHKELSIEKAGQNWIQVEGHRFRFPGGGTTFPNGADAYIDNINELIPL--TGGNIRTAVD 228 (629)
Q Consensus 151 ~y~~P~~wP~s~~~~w~~n~p~~~L~~~k~~q~Wv~~~g~~~~Fpgggt~f~~ga~~~i~~I~~lL~~--~~g~~~~VLD 228 (629)
|+++-|.--.+.|++ |.|.|.......+...+ .++.-.|- ....++.....+.|.+.+.. ..+.+-+|||
T Consensus 70 G~~tGFDSGstLDYV-YrN~p~G~~~~GrliDr------~yLnaiGW-rGIR~Rk~~l~~~i~~ai~~L~~~g~pvrIlD 141 (311)
T PF12147_consen 70 GLETGFDSGSTLDYV-YRNQPQGKGPLGRLIDR------NYLNAIGW-RGIRQRKVHLEELIRQAIARLREQGRPVRILD 141 (311)
T ss_pred chhcCCCCcchHhHH-hcCCCCCcchHHHHHHH------hhhcccch-HHHHHHHHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 567777766666766 67777755433322111 11111110 11112222333334333332 2345668999
Q ss_pred eCCCCchHHHHHHHcCCc-EeEEEeecCcHHHHHHHH----HcCCC--eEEEEecCCCCC-CC--CCCeeEEEecCcccc
Q 006834 229 TGCGVASWGAYLLKRDIL-TMSFARRDTHEAQVQFAL----ERGVP--AMIGVISSKRLP-YP--ARAFDMAHCSGCLIP 298 (629)
Q Consensus 229 IGCGtG~~a~~La~~g~~-~v~i~gvDiS~~~i~~A~----erg~~--~~~~v~d~~~Lp-~p--d~sFDlV~~s~~L~h 298 (629)
|.||.|......++.... ..++.-.|.|+..++..+ ++|.. +.|.+.|+.... +. +-..++++.+..++-
T Consensus 142 IAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~iVsGL~El 221 (311)
T PF12147_consen 142 IAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAIVSGLYEL 221 (311)
T ss_pred eccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEEEecchhh
Confidence 999999988887776543 457788999999998876 45543 488888765431 22 345799999998877
Q ss_pred cccCH--HHHHHHHHhcccCCcEEEEEeCCCCccc--------cc---cCccCcchhhhhHHHHHHHHHHHhcceeecc
Q 006834 299 WYMYD--GLYLLEVDRVLRPGGYWILSGPPIHWKK--------YW---RGWERTKEDLKQEQDTIEDIAKRLCWKKLIE 364 (629)
Q Consensus 299 ~~~d~--~~~L~el~RvLKPGG~liis~P~~~w~~--------~~---~~w~~~~e~l~~~~~~ie~l~~~l~w~~v~~ 364 (629)
+.++. ...|.-+.++|.|||+++.+.-|..-+. .+ ..|--. ...+.+|.++.+..+++++..
T Consensus 222 F~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMR----rRsq~EmD~Lv~~aGF~K~~q 296 (311)
T PF12147_consen 222 FPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMR----RRSQAEMDQLVEAAGFEKIDQ 296 (311)
T ss_pred CCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEE----ecCHHHHHHHHHHcCCchhhh
Confidence 77442 4579999999999999999974322111 11 123211 112455777888888876543
No 259
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=97.67 E-value=0.00028 Score=77.65 Aligned_cols=137 Identities=12% Similarity=0.123 Sum_probs=86.7
Q ss_pred EEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhh----cc-cceec-cccccCCCCCcccceeeccccccc
Q 006834 482 NVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYER----GL-IGTYQ-DWCEAFSTYPRTYDLIHASGVFSI 554 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~er----gl-i~~~~-~~~e~f~~yp~t~Dl~H~~~~fs~ 554 (629)
+|||+|||+|.++.+|+.. +- .+|..+|.++.+++.+.+. |+ +.+++ ||.+....-...||+|-++-=+-.
T Consensus 254 rVLDLGcGSG~IaiaLA~~~p~--a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~ 331 (423)
T PRK14966 254 RVWDLGTGSGAVAVTVALERPD--AFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIE 331 (423)
T ss_pred EEEEEeChhhHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCCC
Confidence 6999999999999888753 22 3456666666777776653 33 33443 554321111257999887543210
Q ss_pred c-------------------CCCcC---HHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCCeEEEeecCCCCCC
Q 006834 555 Y-------------------QDRCD---ITNILLEMDRILRPEGTVIFRDTVEMLVKIRSITEGMRWKSQIMDHESGPFN 612 (629)
Q Consensus 555 ~-------------------~~~c~---~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~l~w~~~~~~~e~~~~~ 612 (629)
. ...-. +..++.+.-+.|+|||++++--..+....+++++....|....+-. .-.+
T Consensus 332 ~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll~~~Gf~~v~v~k--Dl~G 409 (423)
T PRK14966 332 NGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAENGFSGVETLP--DLAG 409 (423)
T ss_pred cchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHHHHCCCcEEEEEE--cCCC
Confidence 0 00011 2357778889999999999866666677888898888786432211 1225
Q ss_pred CceEEEEEec
Q 006834 613 PEKILFAAKT 622 (629)
Q Consensus 613 ~e~~l~~~K~ 622 (629)
.++++++++.
T Consensus 410 ~dR~v~~~~~ 419 (423)
T PRK14966 410 LDRVTLGKYM 419 (423)
T ss_pred CcEEEEEEEh
Confidence 7899998763
No 260
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=97.67 E-value=1e-05 Score=71.12 Aligned_cols=90 Identities=21% Similarity=0.325 Sum_probs=63.4
Q ss_pred EEeecccchhHHhhhhCCC--eEEEEecCCCCCCCchHHHHhhcc-----cceeccccccCCCCC---cccceeecccc-
Q 006834 483 VMDMNAYLGGFAAAMSKYP--VWVMNVVPFHSNPDTLGAIYERGL-----IGTYQDWCEAFSTYP---RTYDLIHASGV- 551 (629)
Q Consensus 483 vlD~~~g~Ggfaa~l~~~~--v~~mnv~~~~~~~~~l~~~~ergl-----i~~~~~~~e~f~~yp---~t~Dl~H~~~~- 551 (629)
|||+|||.|....+|.+.- ---..+..+|.++.++..+.++.- +-.++ ..+..+| .+||+|=+.+.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~---~D~~~l~~~~~~~D~v~~~~~~ 77 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQ---ADARDLPFSDGKFDLVVCSGLS 77 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEE---SCTTCHHHHSSSEEEEEE-TTG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEE---CCHhHCcccCCCeeEEEEcCCc
Confidence 7999999999999998651 011466777877789999988883 22333 3444444 79999999666
Q ss_pred ccccCCCcCHHHHHHHHhhcccCCc
Q 006834 552 FSIYQDRCDITNILLEMDRILRPEG 576 (629)
Q Consensus 552 fs~~~~~c~~~~~l~e~dRiLrPgG 576 (629)
|.. -..-.++.+|-++-++|||||
T Consensus 78 ~~~-~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 78 LHH-LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGG-SSHHHHHHHHHHHHHTEEEEE
T ss_pred cCC-CCHHHHHHHHHHHHHHhCCCC
Confidence 444 555678899999999999998
No 261
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=97.67 E-value=0.00011 Score=65.84 Aligned_cols=93 Identities=25% Similarity=0.286 Sum_probs=58.8
Q ss_pred eEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHh----hcc--cceec-cccccCCCCCcccceeeccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYE----RGL--IGTYQ-DWCEAFSTYPRTYDLIHASGVF 552 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~e----rgl--i~~~~-~~~e~f~~yp~t~Dl~H~~~~f 552 (629)
.+|||+|||.|.++.++++. +- .+|..+|.++.++..+.+ .|+ +.+.. |.-..+...+.+||.|=+.+..
T Consensus 21 ~~vldlG~G~G~~~~~l~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~ 98 (124)
T TIGR02469 21 DVLWDIGAGSGSITIEAARLVPN--GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSG 98 (124)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCC--ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcc
Confidence 37999999999999999875 21 345556655556655432 333 22221 1111112234689987653322
Q ss_pred cccCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006834 553 SIYQDRCDITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 553 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
..++.++.++-|+|+|||++++.
T Consensus 99 ------~~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 99 ------GLLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred ------hhHHHHHHHHHHHcCCCCEEEEE
Confidence 23568999999999999999985
No 262
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.66 E-value=5.4e-05 Score=76.07 Aligned_cols=94 Identities=17% Similarity=0.216 Sum_probs=57.3
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhh----cc--cceeccccccCCCCC--cccce
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYER----GL--IGTYQDWCEAFSTYP--RTYDL 545 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~er----gl--i~~~~~~~e~f~~yp--~t~Dl 545 (629)
+.++ .+|||+|||+|.+++.|++. +- .-.|+.+|..+..+..+.++ |+ +-+.+ +..+..++ ..||+
T Consensus 74 ~~~g--~~VLdIG~GsG~~t~~la~~~~~-~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~--gd~~~~~~~~~~fD~ 148 (212)
T PRK13942 74 LKEG--MKVLEIGTGSGYHAAVVAEIVGK-SGKVVTIERIPELAEKAKKTLKKLGYDNVEVIV--GDGTLGYEENAPYDR 148 (212)
T ss_pred CCCc--CEEEEECCcccHHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEE--CCcccCCCcCCCcCE
Confidence 4444 36999999999999887654 10 00223333344566555443 43 22232 23344444 78999
Q ss_pred eeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 546 IHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 546 ~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
|++.+. .+.+..++-+.|||||.+++--
T Consensus 149 I~~~~~---------~~~~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 149 IYVTAA---------GPDIPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred EEECCC---------cccchHHHHHhhCCCcEEEEEE
Confidence 998433 3445567778999999999853
No 263
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.65 E-value=0.00015 Score=77.03 Aligned_cols=111 Identities=22% Similarity=0.277 Sum_probs=70.8
Q ss_pred eEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhh----cc---cceec-cccccCCCCC-cccceeeccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYER----GL---IGTYQ-DWCEAFSTYP-RTYDLIHASG 550 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~er----gl---i~~~~-~~~e~f~~yp-~t~Dl~H~~~ 550 (629)
.+|||+|||.|.++.+|+.. +- .+|+.+|.++..+..+.+. |+ |-+++ |+.+ ..| .+||+|-++-
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~--~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~---~l~~~~fDlIvsNP 209 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPD--AEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA---ALPGRRYDLIVSNP 209 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh---hCCCCCccEEEECC
Confidence 46999999999999999765 22 3456667666677666544 54 34444 4333 344 6899998752
Q ss_pred cccc------------cCC---------C-cCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcC
Q 006834 551 VFSI------------YQD---------R-CDITNILLEMDRILRPEGTVIFRDTVEMLVKIRSITEGM 597 (629)
Q Consensus 551 ~fs~------------~~~---------~-c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~l 597 (629)
=+.. +.. . -....++.++-++|+|||.+++--..+ ...+.+++...
T Consensus 210 Pyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-~~~~~~~~~~~ 277 (307)
T PRK11805 210 PYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-RVHLEEAYPDV 277 (307)
T ss_pred CCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-HHHHHHHHhhC
Confidence 1110 000 0 113468899999999999999954333 33577776654
No 264
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.65 E-value=0.00017 Score=80.47 Aligned_cols=97 Identities=16% Similarity=0.199 Sum_probs=65.6
Q ss_pred CCeEEEeCCCCchHHHHHHHcCC---cEeEEEeecCcHHHHHHHHH----cC--CCeEEEEecCCCCCCCCCCeeEEEec
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDI---LTMSFARRDTHEAQVQFALE----RG--VPAMIGVISSKRLPYPARAFDMAHCS 293 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~---~~v~i~gvDiS~~~i~~A~e----rg--~~~~~~v~d~~~Lp~pd~sFDlV~~s 293 (629)
...|||||||+|-+....++.+. ....+++++-++.++...++ ++ ..+++..+|++.+..+ ...|+|++=
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp-ekvDIIVSE 265 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP-EKVDIIVSE 265 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS-S-EEEEEE-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC-CceeEEEEe
Confidence 35799999999998877666541 24567888999877765533 22 4689999999988765 489999981
Q ss_pred --CcccccccCHHHHHHHHHhcccCCcEEE
Q 006834 294 --GCLIPWYMYDGLYLLEVDRVLRPGGYWI 321 (629)
Q Consensus 294 --~~L~h~~~d~~~~L~el~RvLKPGG~li 321 (629)
..+ -..+--...|....|.|||||.++
T Consensus 266 lLGsf-g~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 266 LLGSF-GDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp --BTT-BTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred ccCCc-cccccCHHHHHHHHhhcCCCCEEe
Confidence 112 111122357888999999999875
No 265
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.64 E-value=0.00031 Score=70.20 Aligned_cols=127 Identities=16% Similarity=0.123 Sum_probs=81.9
Q ss_pred cEeecCCeeeecCCCCCCCCchHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHH
Q 006834 184 WIQVEGHRFRFPGGGTTFPNGADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFA 263 (629)
Q Consensus 184 Wv~~~g~~~~Fpgggt~f~~ga~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A 263 (629)
..+..|-.+.+.-.-.+|..+-..-...|.+.+. ++ .+|||+.||.|.|+..+++.+. ...+.++|+++.+++..
T Consensus 67 ~~~E~G~~f~~D~~kvyfs~rl~~Er~Ri~~~v~--~~--e~VlD~faGIG~f~l~~ak~~~-~~~V~A~d~Np~a~~~L 141 (200)
T PF02475_consen 67 IHKENGIRFKVDLSKVYFSPRLSTERRRIANLVK--PG--EVVLDMFAGIGPFSLPIAKHGK-AKRVYAVDLNPDAVEYL 141 (200)
T ss_dssp EEEETTEEEEEETTTS---GGGHHHHHHHHTC----TT---EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHH
T ss_pred EEEeCCEEEEEccceEEEccccHHHHHHHHhcCC--cc--eEEEEccCCccHHHHHHhhhcC-ccEEEEecCCHHHHHHH
Confidence 3455666777777778887776666667776643 23 4999999999999999998321 12356669999999988
Q ss_pred HHc----CC--CeEEEEecCCCCCCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEE
Q 006834 264 LER----GV--PAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWI 321 (629)
Q Consensus 264 ~er----g~--~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~li 321 (629)
++. +. .+....+|...+.. .+.||-|++.. +..-..+|..+.+++++||.+-
T Consensus 142 ~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~l-----p~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 142 KENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNL-----PESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp HHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE-------TSSGGGGHHHHHHHEEEEEEEE
T ss_pred HHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECC-----hHHHHHHHHHHHHHhcCCcEEE
Confidence 754 22 36677888877754 78999998754 2233468899999999999874
No 266
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=97.64 E-value=0.00027 Score=74.19 Aligned_cols=135 Identities=16% Similarity=0.213 Sum_probs=85.2
Q ss_pred eEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhh----cc---cceec-cccccCCCCC-cccceeeccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYER----GL---IGTYQ-DWCEAFSTYP-RTYDLIHASG 550 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~er----gl---i~~~~-~~~e~f~~yp-~t~Dl~H~~~ 550 (629)
..|||+|||.|.++.+|+.. +- .+|..+|.+...+.++.+. |+ +-.++ ||.+.+ + ..||+|-++-
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~--~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~---~~~~fDlIvsNP 190 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPN--AEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPL---AGQKIDIIVSNP 190 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccC---cCCCccEEEECC
Confidence 36999999999999999864 21 2455666665677666653 44 33343 665543 4 3799987641
Q ss_pred -------------cccccCCC---------cCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHh-cCCCeEEEeecC
Q 006834 551 -------------VFSIYQDR---------CDITNILLEMDRILRPEGTVIFRDTVEMLVKIRSITE-GMRWKSQIMDHE 607 (629)
Q Consensus 551 -------------~fs~~~~~---------c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~-~l~w~~~~~~~e 607 (629)
++...... -.+..++.++-++|+|||++++--..+....+++++. ...|....+ ..
T Consensus 191 Pyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~~~~~~~~~~~-~~ 269 (284)
T TIGR00536 191 PYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLRIKFTWYDVEN-GR 269 (284)
T ss_pred CCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHhcCCCceeEE-ec
Confidence 11100000 1245688999999999999999766666667777766 456753221 22
Q ss_pred CCCCCCceEEEEEec
Q 006834 608 SGPFNPEKILFAAKT 622 (629)
Q Consensus 608 ~~~~~~e~~l~~~K~ 622 (629)
| -.+.++++++++.
T Consensus 270 D-~~g~~R~~~~~~~ 283 (284)
T TIGR00536 270 D-LNGKERVVLGFYH 283 (284)
T ss_pred C-CCCCceEEEEEec
Confidence 2 2357889888753
No 267
>PTZ00146 fibrillarin; Provisional
Probab=97.63 E-value=0.00034 Score=73.57 Aligned_cols=98 Identities=17% Similarity=0.203 Sum_probs=62.7
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCC-----CeEEEEecCCCCCCCchHHHHhh-cccceeccccccCCCCC---cccce
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKY-----PVWVMNVVPFHSNPDTLGAIYER-GLIGTYQDWCEAFSTYP---RTYDL 545 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~-----~v~~mnv~~~~~~~~~l~~~~er-gli~~~~~~~e~f~~yp---~t~Dl 545 (629)
|.++. +|||+|||.|+|..+|++. .|+.+-+.+.-.. +++.++.+| +++.+..|.+... .|+ .++|+
T Consensus 130 IkpG~--~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~-dLl~~ak~r~NI~~I~~Da~~p~-~y~~~~~~vDv 205 (293)
T PTZ00146 130 IKPGS--KVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGR-DLTNMAKKRPNIVPIIEDARYPQ-KYRMLVPMVDV 205 (293)
T ss_pred cCCCC--EEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHH-HHHHHhhhcCCCEEEECCccChh-hhhcccCCCCE
Confidence 56665 5999999999999999875 2666554432221 356666554 5555555644321 122 57898
Q ss_pred eeccccccccCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006834 546 IHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 546 ~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
|=++-. ..-...-+++|+.|+|||||+|+|.
T Consensus 206 V~~Dva-----~pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 206 IFADVA-----QPDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred EEEeCC-----CcchHHHHHHHHHHhccCCCEEEEE
Confidence 755331 1112334677999999999999994
No 268
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=97.62 E-value=6.9e-05 Score=73.95 Aligned_cols=93 Identities=24% Similarity=0.290 Sum_probs=62.4
Q ss_pred ccCCCCeeEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhhcccceeccccccCCCCC-cccceeecccc
Q 006834 474 LFHKGRYRNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAFSTYP-RTYDLIHASGV 551 (629)
Q Consensus 474 ~~~~~~~R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~ergli~~~~~~~e~f~~yp-~t~Dl~H~~~~ 551 (629)
.+..+. +|||+|||.|.+..+|++. ++ ++..+|.++.++..+.++|+--+..|..+.+..++ ++||+|-+.++
T Consensus 10 ~i~~~~--~iLDiGcG~G~~~~~l~~~~~~---~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~ 84 (194)
T TIGR02081 10 LIPPGS--RVLDLGCGDGELLALLRDEKQV---RGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQT 84 (194)
T ss_pred hcCCCC--EEEEeCCCCCHHHHHHHhccCC---cEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhH
Confidence 344443 6999999999999999754 32 33455666578888888876222223333343455 79999999887
Q ss_pred ccccCCCcCHHHHHHHHhhcccC
Q 006834 552 FSIYQDRCDITNILLEMDRILRP 574 (629)
Q Consensus 552 fs~~~~~c~~~~~l~e~dRiLrP 574 (629)
|.... +...+|.||-|++++
T Consensus 85 l~~~~---d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 85 LQATR---NPEEILDEMLRVGRH 104 (194)
T ss_pred hHcCc---CHHHHHHHHHHhCCe
Confidence 75433 467888888777664
No 269
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=97.62 E-value=6.2e-05 Score=74.25 Aligned_cols=98 Identities=21% Similarity=0.274 Sum_probs=71.6
Q ss_pred cccCCCCeeEEEeecccchhHHhhhhC-CCeEEEEecCCCCCCCchHHHHhhcccceeccccccCCCCC-cccceeeccc
Q 006834 473 GLFHKGRYRNVMDMNAYLGGFAAAMSK-YPVWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAFSTYP-RTYDLIHASG 550 (629)
Q Consensus 473 ~~~~~~~~R~vlD~~~g~Ggfaa~l~~-~~v~~mnv~~~~~~~~~l~~~~ergli~~~~~~~e~f~~yp-~t~Dl~H~~~ 550 (629)
.-|.+|+. |||+|||.|.+-++|.+ ++|-+ ..++.....+....+||+-=+.+|.=+.+..|| .+||.+=.+.
T Consensus 9 ~~I~pgsr--VLDLGCGdG~LL~~L~~~k~v~g---~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsq 83 (193)
T PF07021_consen 9 EWIEPGSR--VLDLGCGDGELLAYLKDEKQVDG---YGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQ 83 (193)
T ss_pred HHcCCCCE--EEecCCCchHHHHHHHHhcCCeE---EEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHh
Confidence 34667764 99999999999999987 56644 334455567899999999644458889999999 9999865533
Q ss_pred cccccCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006834 551 VFSIYQDRCDITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 551 ~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
.+... -..+.+|.||-|| |...|++
T Consensus 84 tLQ~~---~~P~~vL~EmlRV---gr~~IVs 108 (193)
T PF07021_consen 84 TLQAV---RRPDEVLEEMLRV---GRRAIVS 108 (193)
T ss_pred HHHhH---hHHHHHHHHHHHh---cCeEEEE
Confidence 22221 2346799999666 6688887
No 270
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.62 E-value=0.00011 Score=79.82 Aligned_cols=96 Identities=21% Similarity=0.229 Sum_probs=80.2
Q ss_pred eEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC------CCeEEEEecCCCCCCCCCCeeEEEecCcccc
Q 006834 225 TAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG------VPAMIGVISSKRLPYPARAFDMAHCSGCLIP 298 (629)
Q Consensus 225 ~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg------~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h 298 (629)
.++|+|||.|....+++.... ....++|.++..+..+.+.. ....++..+....|++++.||.+.+..+..|
T Consensus 113 ~~~~~~~g~~~~~~~i~~f~~--~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~ 190 (364)
T KOG1269|consen 113 KVLDVGTGVGGPSRYIAVFKK--AGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVCH 190 (364)
T ss_pred cccccCcCcCchhHHHHHhcc--CCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeeccc
Confidence 799999999999999887642 24466699998888776532 2345577788888999999999999999988
Q ss_pred cccCHHHHHHHHHhcccCCcEEEEE
Q 006834 299 WYMYDGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 299 ~~~d~~~~L~el~RvLKPGG~liis 323 (629)
.. +....+.|+.|+++|||+++..
T Consensus 191 ~~-~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 191 AP-DLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred CC-cHHHHHHHHhcccCCCceEEeH
Confidence 87 8899999999999999999986
No 271
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=97.61 E-value=0.00014 Score=73.08 Aligned_cols=97 Identities=12% Similarity=0.153 Sum_probs=69.6
Q ss_pred eeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcc-------cceeccccccCCCCCcccceeeccccc
Q 006834 480 YRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGL-------IGTYQDWCEAFSTYPRTYDLIHASGVF 552 (629)
Q Consensus 480 ~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergl-------i~~~~~~~e~f~~yp~t~Dl~H~~~~f 552 (629)
-.+|||+|||.|.++.+|++.+. .|..+|.++.++..+.++.- +...+ ..+...|.+||+|=+..++
T Consensus 56 ~~~vLDiGcG~G~~~~~la~~~~---~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~---~d~~~~~~~fD~ii~~~~l 129 (219)
T TIGR02021 56 GKRVLDAGCGTGLLSIELAKRGA---IVKAVDISEQMVQMARNRAQGRDVAGNVEFEV---NDLLSLCGEFDIVVCMDVL 129 (219)
T ss_pred CCEEEEEeCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEE---CChhhCCCCcCEEEEhhHH
Confidence 45799999999999999998754 45667777788888877632 22222 3444445889988775555
Q ss_pred cccCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 553 SIYQDRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 553 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
..+ ...++..++.++.|+++|++++.+...
T Consensus 130 ~~~-~~~~~~~~l~~i~~~~~~~~~i~~~~~ 159 (219)
T TIGR02021 130 IHY-PASDMAKALGHLASLTKERVIFTFAPK 159 (219)
T ss_pred HhC-CHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 433 234567899999999999988887643
No 272
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=97.61 E-value=0.00017 Score=75.75 Aligned_cols=120 Identities=23% Similarity=0.311 Sum_probs=75.7
Q ss_pred eEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhh----cc---cceec-cccccCCCCC-cccceeeccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYER----GL---IGTYQ-DWCEAFSTYP-RTYDLIHASG 550 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~er----gl---i~~~~-~~~e~f~~yp-~t~Dl~H~~~ 550 (629)
.+|||+|||+|.++.+|++. +- .+|+.+|.++..+..+.+. |+ |.+++ |+ +...| .+||+|-++-
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~~--~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~---~~~~~~~~fD~Iv~NP 197 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFPE--AEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDL---FAALPGRKYDLIVSNP 197 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECch---hhccCCCCccEEEECC
Confidence 46999999999999999865 21 2455666665677666554 55 33333 33 23445 5899988752
Q ss_pred cccc------------cC---------CCc-CHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCCeEEEeec
Q 006834 551 VFSI------------YQ---------DRC-DITNILLEMDRILRPEGTVIFRDTVEMLVKIRSITEGMRWKSQIMDH 606 (629)
Q Consensus 551 ~fs~------------~~---------~~c-~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~l~w~~~~~~~ 606 (629)
=+.. +. +.. ....++.++-++|+|||.+++--..+. ..+++++....|.-.-+++
T Consensus 198 Py~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~-~~v~~~~~~~~~~~~~~~~ 274 (284)
T TIGR03533 198 PYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM-EALEEAYPDVPFTWLEFEN 274 (284)
T ss_pred CCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH-HHHHHHHHhCCCceeeecC
Confidence 1110 00 001 124588999999999999998654433 5788887765554444443
No 273
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.60 E-value=0.00026 Score=69.81 Aligned_cols=131 Identities=14% Similarity=0.121 Sum_probs=81.9
Q ss_pred CCeeeecCCCCCCCCchHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc--
Q 006834 189 GHRFRFPGGGTTFPNGADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER-- 266 (629)
Q Consensus 189 g~~~~Fpgggt~f~~ga~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er-- 266 (629)
|.++..|.+.. .....+...+.+-++|....-.+.++||+-||+|.++.+.+.+|.. .++.+|.+...++..+++
T Consensus 10 gr~l~~p~~~~-~RPT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~--~v~fVE~~~~a~~~i~~N~~ 86 (183)
T PF03602_consen 10 GRKLKTPKGDN-TRPTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAK--SVVFVEKNRKAIKIIKKNLE 86 (183)
T ss_dssp T-EEE-TT--T-S-SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-S--EEEEEES-HHHHHHHHHHHH
T ss_pred CCEecCCCCCC-cCCCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCC--eEEEEECCHHHHHHHHHHHH
Confidence 44555554422 2344566677777777643112349999999999999999999976 446679999999988865
Q ss_pred --CC--CeEEEEecCCC-CC---CCCCCeeEEEecCcccccccCH--HHHHHHHH--hcccCCcEEEEEeC
Q 006834 267 --GV--PAMIGVISSKR-LP---YPARAFDMAHCSGCLIPWYMYD--GLYLLEVD--RVLRPGGYWILSGP 325 (629)
Q Consensus 267 --g~--~~~~~v~d~~~-Lp---~pd~sFDlV~~s~~L~h~~~d~--~~~L~el~--RvLKPGG~liis~P 325 (629)
+. .+.+...|... +. .....||+|++-.-+ .... ..++..+. .+|+++|.+++...
T Consensus 87 ~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY---~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 87 KLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDPPY---AKGLYYEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp HHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--ST---TSCHHHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred HhCCCcceeeeccCHHHHHHhhcccCCCceEEEECCCc---ccchHHHHHHHHHHHCCCCCCCEEEEEEec
Confidence 22 35666666422 21 246899999987643 3232 55677776 79999999999864
No 274
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=97.59 E-value=0.00022 Score=71.55 Aligned_cols=96 Identities=18% Similarity=0.260 Sum_probs=66.0
Q ss_pred eeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc---cceeccccccCCCCCcccceeeccccc
Q 006834 480 YRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL---IGTYQDWCEAFSTYPRTYDLIHASGVF 552 (629)
Q Consensus 480 ~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl---i~~~~~~~e~f~~yp~t~Dl~H~~~~f 552 (629)
-.+|||+|||.|.++.+|++.+. .|..+|.+++++..+.++ |+ |...+ ..+...+.+||+|.+..+|
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~~~---~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~---~d~~~~~~~fD~v~~~~~l 137 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARRGA---KVVASDISPQMVEEARERAPEAGLAGNITFEV---GDLESLLGRFDTVVCLDVL 137 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccCcEEEE---cCchhccCCcCEEEEcchh
Confidence 35799999999999999988764 366667666788877765 22 22222 2344445889999987777
Q ss_pred cccCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 553 SIYQDRCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 553 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
..+. .-.+..++.++-|++++++.+.+..
T Consensus 138 ~~~~-~~~~~~~l~~l~~~~~~~~~i~~~~ 166 (230)
T PRK07580 138 IHYP-QEDAARMLAHLASLTRGSLIFTFAP 166 (230)
T ss_pred hcCC-HHHHHHHHHHHHhhcCCeEEEEECC
Confidence 4433 2356778899999887666555443
No 275
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=97.58 E-value=0.00018 Score=74.31 Aligned_cols=126 Identities=13% Similarity=0.148 Sum_probs=82.3
Q ss_pred eEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhh----cccceec-cccccCCC-CCcccceeecccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYER----GLIGTYQ-DWCEAFST-YPRTYDLIHASGVFS 553 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~er----gli~~~~-~~~e~f~~-yp~t~Dl~H~~~~fs 553 (629)
.+|||+|||+|.++.+|++. +- .+|+.+|.++..+..+.+. |+ .+++ |+.+.+.. ....||+|=++==+.
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~~~--~~v~~vDis~~al~~A~~N~~~~~~-~~~~~D~~~~l~~~~~~~fDlVv~NPPy~ 164 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAALDG--IELHAADIDPAAVRCARRNLADAGG-TVHEGDLYDALPTALRGRVDILAANAPYV 164 (251)
T ss_pred CEEEEecCchHHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCC-EEEEeechhhcchhcCCCEeEEEECCCCC
Confidence 36999999999999888753 21 2345556655666655432 32 2333 44433321 235799987654321
Q ss_pred c-------------cCCCcC----------HHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCCeEEEeecCCC
Q 006834 554 I-------------YQDRCD----------ITNILLEMDRILRPEGTVIFRDTVEMLVKIRSITEGMRWKSQIMDHESG 609 (629)
Q Consensus 554 ~-------------~~~~c~----------~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~l~w~~~~~~~e~~ 609 (629)
. +..+.. +..++..+.++|+|||.+++--..+....+..++....|+..+..|++-
T Consensus 165 ~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~~g~~~~~~~~~~~ 243 (251)
T TIGR03704 165 PTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFARAGLIARVASSEEL 243 (251)
T ss_pred CchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHHCCCCceeeEcccc
Confidence 1 111111 3468888899999999999976666677899999989999998888864
No 276
>PRK00536 speE spermidine synthase; Provisional
Probab=97.57 E-value=0.00064 Score=70.66 Aligned_cols=93 Identities=12% Similarity=0.053 Sum_probs=69.8
Q ss_pred CCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc---------CCCeEEEEecCCCCCCCCCCeeEE
Q 006834 220 GGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER---------GVPAMIGVISSKRLPYPARAFDMA 290 (629)
Q Consensus 220 ~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er---------g~~~~~~v~d~~~Lp~pd~sFDlV 290 (629)
-+.+++||=||.|.|..+++++++.- .++-+|++++.++.+++- .+++.+.. ... .-..++||+|
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh~~---~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~~--~~~~~~fDVI 143 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKYDT---HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QLL--DLDIKKYDLI 143 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCcCC---eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hhh--hccCCcCCEE
Confidence 34567999999999999999999853 667789999999999973 23344433 111 1123689999
Q ss_pred EecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 291 HCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 291 ~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
+.-.. .+..+.+.++|.|+|||.++...
T Consensus 144 IvDs~------~~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 144 ICLQE------PDIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred EEcCC------CChHHHHHHHHhcCCCcEEEECC
Confidence 97532 34678899999999999999854
No 277
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.56 E-value=0.00026 Score=74.89 Aligned_cols=119 Identities=16% Similarity=0.149 Sum_probs=77.0
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcC------CcEeEEEeecCcHHHHHHHHHc----CC---CeEE
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRD------ILTMSFARRDTHEAQVQFALER----GV---PAMI 272 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g------~~~v~i~gvDiS~~~i~~A~er----g~---~~~~ 272 (629)
....+.+.+++....+. +|||..||+|.|...+.+.- .....+.|+|+++.++..|+-+ +. ...+
T Consensus 32 ~~i~~l~~~~~~~~~~~--~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i 109 (311)
T PF02384_consen 32 REIVDLMVKLLNPKKGD--SVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINI 109 (311)
T ss_dssp HHHHHHHHHHHTT-TTE--EEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEE
T ss_pred HHHHHHHHhhhhccccc--eeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccc
Confidence 55567777777554444 89999999999988887631 1234778999999999988743 21 2346
Q ss_pred EEecCCCCCCC--CCCeeEEEecCccccc--cc-----------------C-HHHHHHHHHhcccCCcEEEEEeCC
Q 006834 273 GVISSKRLPYP--ARAFDMAHCSGCLIPW--YM-----------------Y-DGLYLLEVDRVLRPGGYWILSGPP 326 (629)
Q Consensus 273 ~v~d~~~Lp~p--d~sFDlV~~s~~L~h~--~~-----------------d-~~~~L~el~RvLKPGG~liis~P~ 326 (629)
...|....+.. .+.||+|+++.-+... .. . ...++..+.+.|++||.+.+..|.
T Consensus 110 ~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~ 185 (311)
T PF02384_consen 110 IQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPN 185 (311)
T ss_dssp EES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEH
T ss_pred cccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecc
Confidence 66665544432 4789999996655322 10 0 124888999999999999888763
No 278
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=97.52 E-value=0.00047 Score=72.46 Aligned_cols=159 Identities=20% Similarity=0.248 Sum_probs=97.0
Q ss_pred chhhHHHHHHHHHHHHHhhcccCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHH---h-hccccee
Q 006834 454 LREDNELWKDRMTYYKKIDGLFHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIY---E-RGLIGTY 529 (629)
Q Consensus 454 f~~d~~~w~~~v~~y~~~~~~~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~---e-rgli~~~ 529 (629)
...||+.+-..+. ..+. .... +|||||||+|--|.+|+...-- .+|..+|-++.-+.++. + .|+.-++
T Consensus 92 Pr~dTe~Lve~~l---~~~~---~~~~-~ilDlGTGSG~iai~la~~~~~-~~V~a~Dis~~Al~~A~~Na~~~~l~~~~ 163 (280)
T COG2890 92 PRPDTELLVEAAL---ALLL---QLDK-RILDLGTGSGAIAIALAKEGPD-AEVIAVDISPDALALARENAERNGLVRVL 163 (280)
T ss_pred cCCchHHHHHHHH---Hhhh---hcCC-cEEEecCChHHHHHHHHhhCcC-CeEEEEECCHHHHHHHHHHHHHcCCccEE
Confidence 3567777776665 1111 1111 8999999999999999876221 46677777655555542 2 3542222
Q ss_pred ccccccCCCCCcccceeeccc----------------------cccccCCCcCHHHHHHHHhhcccCCcEEEEEeCHHHH
Q 006834 530 QDWCEAFSTYPRTYDLIHASG----------------------VFSIYQDRCDITNILLEMDRILRPEGTVIFRDTVEML 587 (629)
Q Consensus 530 ~~~~e~f~~yp~t~Dl~H~~~----------------------~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~ 587 (629)
.--+.-|+..+..||+|-++= +|+.....--+..++.+..++|+|||++++....+..
T Consensus 164 ~~~~dlf~~~~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~ 243 (280)
T COG2890 164 VVQSDLFEPLRGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQG 243 (280)
T ss_pred EEeeecccccCCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcH
Confidence 211134555666888865421 1221111112345899999999999999998777777
Q ss_pred HHHHHHHhcCCCeEEEeecCCCCCCCceEEEEEe
Q 006834 588 VKIRSITEGMRWKSQIMDHESGPFNPEKILFAAK 621 (629)
Q Consensus 588 ~~~~~~~~~l~w~~~~~~~e~~~~~~e~~l~~~K 621 (629)
..+++++....+ ...+.....-.+.+.+.++++
T Consensus 244 ~~v~~~~~~~~~-~~~v~~~~d~~g~~rv~~~~~ 276 (280)
T COG2890 244 EAVKALFEDTGF-FEIVETLKDLFGRDRVVLAKL 276 (280)
T ss_pred HHHHHHHHhcCC-ceEEEEEecCCCceEEEEEEe
Confidence 889999888886 333333333335667766654
No 279
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=97.51 E-value=0.00017 Score=74.19 Aligned_cols=92 Identities=23% Similarity=0.462 Sum_probs=71.5
Q ss_pred CeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhccc-ceeccccccCCCCCcccceeeccccccccCC
Q 006834 479 RYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGLI-GTYQDWCEAFSTYPRTYDLIHASGVFSIYQD 557 (629)
Q Consensus 479 ~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergli-~~~~~~~e~f~~yp~t~Dl~H~~~~fs~~~~ 557 (629)
+..++||+|||-|+.-+.|+.. .-+|..++.+..|.....+||.- =...+|-+. +..||+|-|-.|. +
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~---f~~v~aTE~S~~Mr~rL~~kg~~vl~~~~w~~~----~~~fDvIscLNvL----D 162 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL---FKEVYATEASPPMRWRLSKKGFTVLDIDDWQQT----DFKFDVISCLNVL----D 162 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh---cceEEeecCCHHHHHHHHhCCCeEEehhhhhcc----CCceEEEeehhhh----h
Confidence 5667999999999999999763 23355667777899999999992 122245532 4679999996665 6
Q ss_pred CcCHHH-HHHHHhhcccCCcEEEEE
Q 006834 558 RCDITN-ILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 558 ~c~~~~-~l~e~dRiLrPgG~~i~~ 581 (629)
||+.+. +|.+|-+.|+|+|.+|+.
T Consensus 163 Rc~~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 163 RCDRPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred ccCCHHHHHHHHHHHhCCCCEEEEE
Confidence 899876 888999999999999996
No 280
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.51 E-value=0.00087 Score=70.43 Aligned_cols=102 Identities=14% Similarity=0.072 Sum_probs=75.5
Q ss_pred CCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC---------CCeEEEEecCCCC-CCCCCCeeEE
Q 006834 221 GNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG---------VPAMIGVISSKRL-PYPARAFDMA 290 (629)
Q Consensus 221 g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg---------~~~~~~v~d~~~L-p~pd~sFDlV 290 (629)
+.+++||-||-|.|..++++++... +-.++.+|+++..++.|++.- +.+.+...|..++ .-...+||+|
T Consensus 75 ~~pk~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvI 153 (282)
T COG0421 75 PNPKRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVI 153 (282)
T ss_pred CCCCeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEE
Confidence 3457999999999999999999874 346778899999999999752 3456666665443 2223489999
Q ss_pred EecCccccccc----CHHHHHHHHHhcccCCcEEEEEe
Q 006834 291 HCSGCLIPWYM----YDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 291 ~~s~~L~h~~~----d~~~~L~el~RvLKPGG~liis~ 324 (629)
++-..= +..+ ....+++.++|.|+++|.++...
T Consensus 154 i~D~td-p~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 154 IVDSTD-PVGPAEALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred EEcCCC-CCCcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence 973321 2111 12679999999999999999873
No 281
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=97.51 E-value=0.00013 Score=77.28 Aligned_cols=102 Identities=16% Similarity=0.241 Sum_probs=62.8
Q ss_pred CCCeeEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHH----HhhcccceeccccccCC--CCCcccceeecc
Q 006834 477 KGRYRNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAI----YERGLIGTYQDWCEAFS--TYPRTYDLIHAS 549 (629)
Q Consensus 477 ~~~~R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~----~ergli~~~~~~~e~f~--~yp~t~Dl~H~~ 549 (629)
....+.|||+|||.|.++.+++++ |- .+++-.|.+ ..++.+ .+.|+-.-++-.+..|. .+|. +|++-..
T Consensus 147 ~~~~~~vlDiG~G~G~~~~~~~~~~p~--~~~~~~D~~-~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~-~D~v~~~ 222 (306)
T TIGR02716 147 LDGVKKMIDVGGGIGDISAAMLKHFPE--LDSTILNLP-GAIDLVNENAAEKGVADRMRGIAVDIYKESYPE-ADAVLFC 222 (306)
T ss_pred CCCCCEEEEeCCchhHHHHHHHHHCCC--CEEEEEecH-HHHHHHHHHHHhCCccceEEEEecCccCCCCCC-CCEEEeE
Confidence 344568999999999999999776 21 122333433 455544 44566332222223332 3554 6986554
Q ss_pred ccccccCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 550 GVFSIYQDRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 550 ~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
+++-.+.. -....+|.++-|.|||||.++|-|.
T Consensus 223 ~~lh~~~~-~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 223 RILYSANE-QLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred hhhhcCCh-HHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 54433322 1335699999999999999999864
No 282
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.50 E-value=0.0011 Score=66.41 Aligned_cols=133 Identities=14% Similarity=0.167 Sum_probs=72.2
Q ss_pred HHHHHHHhhcccCCCCeeEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhhcccceeccccccCCCCC--
Q 006834 464 RMTYYKKIDGLFHKGRYRNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAFSTYP-- 540 (629)
Q Consensus 464 ~v~~y~~~~~~~~~~~~R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~ergli~~~~~~~e~f~~yp-- 540 (629)
.|+.+.+.+..... .-.|=|||||-+-.|+++.+. .|.-.-+++.+.. +.. |. ...-|
T Consensus 59 Pvd~iI~~l~~~~~--~~viaD~GCGdA~la~~~~~~~~V~SfDLva~n~~--------------Vta--cd-ia~vPL~ 119 (219)
T PF05148_consen 59 PVDVIIEWLKKRPK--SLVIADFGCGDAKLAKAVPNKHKVHSFDLVAPNPR--------------VTA--CD-IANVPLE 119 (219)
T ss_dssp HHHHHHHHHCTS-T--TS-EEEES-TT-HHHHH--S---EEEEESS-SSTT--------------EEE--S--TTS-S--
T ss_pred cHHHHHHHHHhcCC--CEEEEECCCchHHHHHhcccCceEEEeeccCCCCC--------------EEE--ec-CccCcCC
Confidence 34445544432222 235999999999999887643 4666666665332 121 21 13334
Q ss_pred -cccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCHH---HHHHHHHHHhcCCCeEEEeecCCCCCCCceE
Q 006834 541 -RTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTVE---MLVKIRSITEGMRWKSQIMDHESGPFNPEKI 616 (629)
Q Consensus 541 -~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~---~~~~~~~~~~~l~w~~~~~~~e~~~~~~e~~ 616 (629)
.+.|++- |.+.-=.-+..+.|.|..|||||||.++|.+-.. ..+...+.++++..+....|..+ .--.+
T Consensus 120 ~~svDv~V----fcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d~~n---~~F~~ 192 (219)
T PF05148_consen 120 DESVDVAV----FCLSLMGTNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKDESN---KHFVL 192 (219)
T ss_dssp TT-EEEEE----EES---SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE--S---TTEEE
T ss_pred CCceeEEE----EEhhhhCCCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEecccCC---CeEEE
Confidence 7888743 2222223578899999999999999999975443 34455566788888887666543 23345
Q ss_pred EEEEec
Q 006834 617 LFAAKT 622 (629)
Q Consensus 617 l~~~K~ 622 (629)
+.-+|.
T Consensus 193 f~F~K~ 198 (219)
T PF05148_consen 193 FEFKKI 198 (219)
T ss_dssp EEEEE-
T ss_pred EEEEEc
Confidence 555554
No 283
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.47 E-value=0.0003 Score=68.49 Aligned_cols=114 Identities=18% Similarity=0.164 Sum_probs=64.5
Q ss_pred hHHHHHHHHhhcC-ccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecC------
Q 006834 205 ADAYIDNINELIP-LTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISS------ 277 (629)
Q Consensus 205 a~~~i~~I~~lL~-~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~------ 277 (629)
+...+..+.+... ...+...+|||+||++|.|+..+++++.....+.++|+.+. .....+.+.++|.
T Consensus 5 a~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~------~~~~~~~~i~~d~~~~~~~ 78 (181)
T PF01728_consen 5 AAFKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM------DPLQNVSFIQGDITNPENI 78 (181)
T ss_dssp HHHHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST------GS-TTEEBTTGGGEEEEHS
T ss_pred HHHHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc------ccccceeeeecccchhhHH
Confidence 3334555666666 34445579999999999999999999843446677798755 1111222222221
Q ss_pred CCCC--C--CCCCeeEEEecCcc---cccccCH-------HHHHHHHHhcccCCcEEEEEe
Q 006834 278 KRLP--Y--PARAFDMAHCSGCL---IPWYMYD-------GLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 278 ~~Lp--~--pd~sFDlV~~s~~L---~h~~~d~-------~~~L~el~RvLKPGG~liis~ 324 (629)
..+. + ..+.||+|+|-.+. .+...+. ...+.-+...|+|||.+++-.
T Consensus 79 ~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~ 139 (181)
T PF01728_consen 79 KDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKV 139 (181)
T ss_dssp HHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred HhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEe
Confidence 1111 1 22689999995522 1111111 124455567899999998865
No 284
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=97.46 E-value=0.00012 Score=73.48 Aligned_cols=95 Identities=18% Similarity=0.170 Sum_probs=57.0
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHh----hcc--cceec-cccccCCCCCcccceee
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYE----RGL--IGTYQ-DWCEAFSTYPRTYDLIH 547 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----rgl--i~~~~-~~~e~f~~yp~t~Dl~H 547 (629)
+..+. .|||+|||+|.+++.|++..=---.|+.+|..+..+..+.+ .|+ +-+.+ |..+.+.. ...||+|+
T Consensus 75 ~~~~~--~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~-~~~fD~Ii 151 (215)
T TIGR00080 75 LKPGM--KVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEP-LAPYDRIY 151 (215)
T ss_pred CCCcC--EEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcc-cCCCCEEE
Confidence 44444 59999999999999987651000013344444455555443 354 22333 22222111 26899998
Q ss_pred ccccccccCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006834 548 ASGVFSIYQDRCDITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 548 ~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
+++. .+.+..++-+.|+|||.+|+-
T Consensus 152 ~~~~---------~~~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 152 VTAA---------GPKIPEALIDQLKEGGILVMP 176 (215)
T ss_pred EcCC---------cccccHHHHHhcCcCcEEEEE
Confidence 7432 345566788999999999984
No 285
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.45 E-value=0.00018 Score=71.88 Aligned_cols=89 Identities=15% Similarity=0.144 Sum_probs=54.8
Q ss_pred eEEEeecccchhHHhhhhCC---CeEEEEecCCCCCCCchHHHH----hhcc---cceec-cccccCCCCCcccceeecc
Q 006834 481 RNVMDMNAYLGGFAAAMSKY---PVWVMNVVPFHSNPDTLGAIY----ERGL---IGTYQ-DWCEAFSTYPRTYDLIHAS 549 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~----ergl---i~~~~-~~~e~f~~yp~t~Dl~H~~ 549 (629)
..|||+|||+|.+++.|++. +- .|+.+|..++++..+. +.|+ +-+++ |..+.+.. ..+||.|.++
T Consensus 74 ~~VLDiG~GsG~~~~~la~~~~~~g---~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~-~~~fD~Ii~~ 149 (205)
T PRK13944 74 MKILEVGTGSGYQAAVCAEAIERRG---KVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK-HAPFDAIIVT 149 (205)
T ss_pred CEEEEECcCccHHHHHHHHhcCCCC---EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc-CCCccEEEEc
Confidence 35999999999999887653 11 2334444444554443 3354 23333 32222221 2689999985
Q ss_pred ccccccCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 550 GVFSIYQDRCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 550 ~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
+.+ +.+.-|+-|+|+|||.+++-.
T Consensus 150 ~~~---------~~~~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 150 AAA---------STIPSALVRQLKDGGVLVIPV 173 (205)
T ss_pred cCc---------chhhHHHHHhcCcCcEEEEEE
Confidence 443 334457889999999999853
No 286
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.42 E-value=0.00069 Score=72.27 Aligned_cols=97 Identities=20% Similarity=0.040 Sum_probs=74.9
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC-CCeEEEEecCCCCCCCCCCeeEEEecCccccccc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG-VPAMIGVISSKRLPYPARAFDMAHCSGCLIPWYM 301 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg-~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~ 301 (629)
....+|+|.|.|+.+..++..... +.+++.....+-.+++.. ..+..+-+|..+- .|. -|+|++-++++||.+
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~---ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~-~P~--~daI~mkWiLhdwtD 251 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPH---IKGINFDLPFVLAAAPYLAPGVEHVAGDMFQD-TPK--GDAIWMKWILHDWTD 251 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCC---CceeecCHHHHHhhhhhhcCCcceeccccccc-CCC--cCeEEEEeecccCCh
Confidence 458999999999999999996543 455588888877776654 5566666665433 343 359999999999995
Q ss_pred C-HHHHHHHHHhcccCCcEEEEEeC
Q 006834 302 Y-DGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 302 d-~~~~L~el~RvLKPGG~liis~P 325 (629)
+ -..+|+++...|+|||.+++...
T Consensus 252 edcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 252 EDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEec
Confidence 4 36799999999999999999754
No 287
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.41 E-value=0.0027 Score=62.61 Aligned_cols=136 Identities=16% Similarity=0.157 Sum_probs=89.8
Q ss_pred cCCeeeecCCCCCCCCchHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc-
Q 006834 188 EGHRFRFPGGGTTFPNGADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER- 266 (629)
Q Consensus 188 ~g~~~~Fpgggt~f~~ga~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er- 266 (629)
.|..+.+|.+.+ .....+...+.+-+++....-.+.++||+-+|+|.++.+.+.+|... .+.+|.+...++..+++
T Consensus 10 kgr~L~~p~~~~-~RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~--~~~vE~~~~a~~~l~~N~ 86 (187)
T COG0742 10 KGRKLKTPDGPG-TRPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAAR--VVFVEKDRKAVKILKENL 86 (187)
T ss_pred cCCcccCCCCCC-cCCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCce--EEEEecCHHHHHHHHHHH
Confidence 345556665422 34455677778888876521223499999999999999999999763 45679999999998875
Q ss_pred ---C--CCeEEEEecCCCC-CCCCC--CeeEEEecCcccccccCHHHHHHH--HHhcccCCcEEEEEeCC
Q 006834 267 ---G--VPAMIGVISSKRL-PYPAR--AFDMAHCSGCLIPWYMYDGLYLLE--VDRVLRPGGYWILSGPP 326 (629)
Q Consensus 267 ---g--~~~~~~v~d~~~L-p~pd~--sFDlV~~s~~L~h~~~d~~~~L~e--l~RvLKPGG~liis~P~ 326 (629)
+ .+..+...|+... +-... .||+|+.-.-+..-..+....+.. -..+|+|+|.+++....
T Consensus 87 ~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~ 156 (187)
T COG0742 87 KALGLEGEARVLRNDALRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDK 156 (187)
T ss_pred HHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence 3 3456666665532 22222 599999877553111112333333 56789999999998653
No 288
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=97.40 E-value=0.00031 Score=70.25 Aligned_cols=88 Identities=16% Similarity=0.221 Sum_probs=57.0
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc--cceeccccccCCCCC--cccceeeccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL--IGTYQDWCEAFSTYP--RTYDLIHASGVF 552 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl--i~~~~~~~e~f~~yp--~t~Dl~H~~~~f 552 (629)
..|||+|||+|.+++.|.+..- .|..+|..++.+..+.++ |+ +.+.+. ..+..+| ..||+|.++..
T Consensus 80 ~~VLeiG~GsG~~t~~la~~~~---~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~--d~~~~~~~~~~fD~I~~~~~- 153 (212)
T PRK00312 80 DRVLEIGTGSGYQAAVLAHLVR---RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHG--DGWKGWPAYAPFDRILVTAA- 153 (212)
T ss_pred CEEEEECCCccHHHHHHHHHhC---EEEEEeCCHHHHHHHHHHHHHCCCCceEEEEC--CcccCCCcCCCcCEEEEccC-
Confidence 4699999999999988766521 344445544566655543 44 333331 2234444 68999887443
Q ss_pred cccCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 553 SIYQDRCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 553 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
.+.+..++-+.|+|||.+++.-
T Consensus 154 --------~~~~~~~l~~~L~~gG~lv~~~ 175 (212)
T PRK00312 154 --------APEIPRALLEQLKEGGILVAPV 175 (212)
T ss_pred --------chhhhHHHHHhcCCCcEEEEEE
Confidence 2445567789999999999853
No 289
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.37 E-value=0.0012 Score=73.03 Aligned_cols=98 Identities=23% Similarity=0.327 Sum_probs=82.9
Q ss_pred eEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC----CCeEEEEecCCCCCCCCCCeeEEEecCcccccc
Q 006834 225 TAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG----VPAMIGVISSKRLPYPARAFDMAHCSGCLIPWY 300 (629)
Q Consensus 225 ~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg----~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~ 300 (629)
++|-+|||.-.+...+.+.|.. .|+.+|+|+..++....++ ....+...|...+.|++++||+|+.-..+.+..
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~--dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFE--DITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCC--CceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 7999999999999999999876 5577799999999888775 346778889999999999999999988887776
Q ss_pred cCHH---------HHHHHHHhcccCCcEEEEEe
Q 006834 301 MYDG---------LYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 301 ~d~~---------~~L~el~RvLKPGG~liis~ 324 (629)
.+.. ..+.++.|+|+|||.++..+
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svt 161 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVT 161 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEE
Confidence 5522 35799999999999987754
No 290
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.35 E-value=0.0019 Score=63.05 Aligned_cols=102 Identities=16% Similarity=0.158 Sum_probs=70.9
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHH----cCCCeEEEEecCCCCCCCCCCeeEEEecCcccc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALE----RGVPAMIGVISSKRLPYPARAFDMAHCSGCLIP 298 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~e----rg~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h 298 (629)
+..+||||||+|..+..|++......-..++|+++.+.+..++ ++..+..++.|...- +..++.|+++.+.-+.+
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~-l~~~~VDvLvfNPPYVp 122 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSG-LRNESVDVLVFNPPYVP 122 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhh-hccCCccEEEECCCcCc
Confidence 4579999999999999999864322234567999999887553 455556666664332 22389999998776543
Q ss_pred cccCH--------------------HHHHHHHHhcccCCcEEEEEeC
Q 006834 299 WYMYD--------------------GLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 299 ~~~d~--------------------~~~L~el~RvLKPGG~liis~P 325 (629)
-..++ .+++..+..+|.|.|.|++.+-
T Consensus 123 t~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~ 169 (209)
T KOG3191|consen 123 TSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVAL 169 (209)
T ss_pred CCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeeh
Confidence 33221 2467778889999999999853
No 291
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.35 E-value=0.00096 Score=69.09 Aligned_cols=86 Identities=15% Similarity=0.124 Sum_probs=69.4
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC---CCeEEEEecCCCCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG---VPAMIGVISSKRLPY 282 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg---~~~~~~v~d~~~Lp~ 282 (629)
...++.|.+.+...+++ +|||||+|.|.++..|++++..+ +++++++.+++..+++. .++.+..+|+.+.++
T Consensus 16 ~~v~~kIv~~a~~~~~d--~VlEIGpG~GaLT~~Ll~~~~~v---~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~ 90 (259)
T COG0030 16 KNVIDKIVEAANISPGD--NVLEIGPGLGALTEPLLERAARV---TAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDF 90 (259)
T ss_pred HHHHHHHHHhcCCCCCC--eEEEECCCCCHHHHHHHhhcCeE---EEEEeCHHHHHHHHHhcccccceEEEeCchhcCcc
Confidence 44577888877766544 89999999999999999998764 45599999999998873 568888899988888
Q ss_pred CCC-CeeEEEecCcc
Q 006834 283 PAR-AFDMAHCSGCL 296 (629)
Q Consensus 283 pd~-sFDlV~~s~~L 296 (629)
++- .++.|+++.-.
T Consensus 91 ~~l~~~~~vVaNlPY 105 (259)
T COG0030 91 PSLAQPYKVVANLPY 105 (259)
T ss_pred hhhcCCCEEEEcCCC
Confidence 754 68899987744
No 292
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=97.34 E-value=0.0011 Score=68.23 Aligned_cols=119 Identities=16% Similarity=0.284 Sum_probs=83.0
Q ss_pred eeEEEeecccchhHHhhhhCC-C-eEEEEecCCCCCCCchHHHHhhcc--------cceec-cccccCCCCC-cccceee
Q 006834 480 YRNVMDMNAYLGGFAAAMSKY-P-VWVMNVVPFHSNPDTLGAIYERGL--------IGTYQ-DWCEAFSTYP-RTYDLIH 547 (629)
Q Consensus 480 ~R~vlD~~~g~Ggfaa~l~~~-~-v~~mnv~~~~~~~~~l~~~~ergl--------i~~~~-~~~e~f~~yp-~t~Dl~H 547 (629)
...|||+|||.|..+-.|+++ + + -++.++-++.....+ .|.+ |.++| |.-+-....+ .+||+|=
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~a---~I~~VEiq~~~a~~A-~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii 120 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEKA---KIVGVEIQEEAAEMA-QRNVALNPLEERIQVIEADIKEFLKALVFASFDLII 120 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCCC---cEEEEEeCHHHHHHH-HHHHHhCcchhceeEehhhHHHhhhcccccccCEEE
Confidence 566999999999998888877 3 3 223333332222222 2222 55665 2222222223 4699987
Q ss_pred cccccc---------------ccCCCcCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCCeEE
Q 006834 548 ASGVFS---------------IYQDRCDITNILLEMDRILRPEGTVIFRDTVEMLVKIRSITEGMRWKSQ 602 (629)
Q Consensus 548 ~~~~fs---------------~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~l~w~~~ 602 (629)
|+==|= .+...|++++++.=.-++|||||++.+=-+.+.+..+-.++++++|..+
T Consensus 121 ~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~~~~k 190 (248)
T COG4123 121 CNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYNLEPK 190 (248)
T ss_pred eCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhcCCCce
Confidence 754432 3445689999999999999999999999999999999999999999976
No 293
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.32 E-value=0.0019 Score=72.55 Aligned_cols=106 Identities=15% Similarity=0.186 Sum_probs=73.1
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCCCC-CCCCCeeEEE----e
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKRLP-YPARAFDMAH----C 292 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~Lp-~pd~sFDlV~----~ 292 (629)
+.+|||+++|.|.=+..|++.....-.+++.|+++.-++..+++ |. ++.+...|...+. ...+.||.|+ |
T Consensus 114 g~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDaPC 193 (470)
T PRK11933 114 PQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDAPC 193 (470)
T ss_pred CCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcCCC
Confidence 34999999999999999988632222567789999988887754 43 3556666666553 2346799999 5
Q ss_pred cCc--cc-------ccccC--------HHHHHHHHHhcccCCcEEEEEeCCCC
Q 006834 293 SGC--LI-------PWYMY--------DGLYLLEVDRVLRPGGYWILSGPPIH 328 (629)
Q Consensus 293 s~~--L~-------h~~~d--------~~~~L~el~RvLKPGG~liis~P~~~ 328 (629)
+.. +. .|..+ ...+|..+.+.|||||+++.++...+
T Consensus 194 SG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~ 246 (470)
T PRK11933 194 SGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLN 246 (470)
T ss_pred CCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCC
Confidence 422 11 12111 13588999999999999999875443
No 294
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.31 E-value=0.0017 Score=65.33 Aligned_cols=134 Identities=16% Similarity=0.101 Sum_probs=86.1
Q ss_pred HHHHHHHHhhcCccCC--CCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCC
Q 006834 206 DAYIDNINELIPLTGG--NIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYP 283 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g--~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~p 283 (629)
...++.+.+....... ...++|||||=+...... ..+ ...++.+|+++. .-.+.+.|....|.|
T Consensus 33 K~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s--~~~--~fdvt~IDLns~----------~~~I~qqDFm~rplp 98 (219)
T PF11968_consen 33 KWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACS--TSG--WFDVTRIDLNSQ----------HPGILQQDFMERPLP 98 (219)
T ss_pred HHHHHHhhhhccccccccccceEEeecccCCCCccc--ccC--ceeeEEeecCCC----------CCCceeeccccCCCC
Confidence 4456666655543221 235899999875543222 222 224567798741 123455666666654
Q ss_pred ---CCCeeEEEecCcccccccCH---HHHHHHHHhcccCCcE-----EEEEeCCCCccccccCccCcchhhhhHHHHHHH
Q 006834 284 ---ARAFDMAHCSGCLIPWYMYD---GLYLLEVDRVLRPGGY-----WILSGPPIHWKKYWRGWERTKEDLKQEQDTIED 352 (629)
Q Consensus 284 ---d~sFDlV~~s~~L~h~~~d~---~~~L~el~RvLKPGG~-----liis~P~~~w~~~~~~w~~~~e~l~~~~~~ie~ 352 (629)
+++||+|.|+.+|...+ ++ ..++..+.+.|+|+|. |+++.|..- ..+- -+...+.+..
T Consensus 99 ~~~~e~FdvIs~SLVLNfVP-~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~C-v~NS---------Ry~~~~~l~~ 167 (219)
T PF11968_consen 99 KNESEKFDVISLSLVLNFVP-DPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPC-VTNS---------RYMTEERLRE 167 (219)
T ss_pred CCcccceeEEEEEEEEeeCC-CHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchH-hhcc---------cccCHHHHHH
Confidence 67999999999996665 54 5699999999999999 999887442 1111 1122456788
Q ss_pred HHHHhcceeecc
Q 006834 353 IAKRLCWKKLIE 364 (629)
Q Consensus 353 l~~~l~w~~v~~ 364 (629)
+.++++|..+..
T Consensus 168 im~~LGf~~~~~ 179 (219)
T PF11968_consen 168 IMESLGFTRVKY 179 (219)
T ss_pred HHHhCCcEEEEE
Confidence 899999976543
No 295
>PRK04457 spermidine synthase; Provisional
Probab=97.31 E-value=0.0011 Score=69.00 Aligned_cols=137 Identities=15% Similarity=0.168 Sum_probs=79.0
Q ss_pred CeeEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhh-ccc------ceec-cccccCCCCCcccceeecc
Q 006834 479 RYRNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYER-GLI------GTYQ-DWCEAFSTYPRTYDLIHAS 549 (629)
Q Consensus 479 ~~R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~er-gli------~~~~-~~~e~f~~yp~t~Dl~H~~ 549 (629)
.-+.|||+|||.|.++.+|++. +- +.+.-+|..+..+.++.+. ++. .+++ |.-+-+...|.+||+|=++
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~--~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D 143 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPD--TRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD 143 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCC--CeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence 4567999999999999988764 32 3344445544688777765 222 1222 2112234456789998765
Q ss_pred cccccc-C-CCcCHHHHHHHHhhcccCCcEEEEE---eCHHHHHHHHHHHhcCCCeEEEeecCCCCCCCceEEEEEe
Q 006834 550 GVFSIY-Q-DRCDITNILLEMDRILRPEGTVIFR---DTVEMLVKIRSITEGMRWKSQIMDHESGPFNPEKILFAAK 621 (629)
Q Consensus 550 ~~fs~~-~-~~c~~~~~l~e~dRiLrPgG~~i~~---d~~~~~~~~~~~~~~l~w~~~~~~~e~~~~~~e~~l~~~K 621 (629)
.|... . .......++.++-++|+|||.+++- ........++.+-+.+.-.+.++..+. ....|+++.|
T Consensus 144 -~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~~F~~~~~~~~~~~---~~N~v~~a~~ 216 (262)
T PRK04457 144 -GFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLESSFEGRVLELPAES---HGNVAVFAFK 216 (262)
T ss_pred -CCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHHhcCCcEEEEecCC---CccEEEEEEC
Confidence 34321 1 1122468999999999999999982 222222223333333332333333321 1347888877
No 296
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=97.30 E-value=0.00028 Score=68.40 Aligned_cols=112 Identities=22% Similarity=0.337 Sum_probs=66.8
Q ss_pred eeEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHh----hcc--cceeccccccCCCCC-cccceeecccc
Q 006834 480 YRNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYE----RGL--IGTYQDWCEAFSTYP-RTYDLIHASGV 551 (629)
Q Consensus 480 ~R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~e----rgl--i~~~~~~~e~f~~yp-~t~Dl~H~~~~ 551 (629)
-.+|||+|||+|-.+.+|+++ +-. .|..+|.+++.+..+.+ .++ +-+++ +..+...+ ..||+|=++-=
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~~~~--~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~--~d~~~~~~~~~fD~Iv~NPP 107 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRGPDA--KVTAVDINPDALELAKRNAERNGLENVEVVQ--SDLFEALPDGKFDLIVSNPP 107 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTSTCE--EEEEEESBHHHHHHHHHHHHHTTCTTEEEEE--SSTTTTCCTTCEEEEEE---
T ss_pred CCeEEEecCChHHHHHHHHHhCCCC--EEEEEcCCHHHHHHHHHHHHhcCcccccccc--ccccccccccceeEEEEccc
Confidence 345999999999999999876 221 23444544455555543 233 22333 33344445 99999887644
Q ss_pred ccccCC--CcCHHHHHHHHhhcccCCcEEEE--EeCHHHHHHHHHHHh
Q 006834 552 FSIYQD--RCDITNILLEMDRILRPEGTVIF--RDTVEMLVKIRSITE 595 (629)
Q Consensus 552 fs~~~~--~c~~~~~l~e~dRiLrPgG~~i~--~d~~~~~~~~~~~~~ 595 (629)
|..... ...++.++.+.-++|+|||.+++ ......-..++++..
T Consensus 108 ~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~l~~~f~ 155 (170)
T PF05175_consen 108 FHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERLLKELFG 155 (170)
T ss_dssp SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS
T ss_pred hhcccccchhhHHHHHHHHHHhccCCCEEEEEeecCCChHHHHHHhcC
Confidence 432221 12357799999999999998854 433434444555554
No 297
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=97.28 E-value=0.00055 Score=68.54 Aligned_cols=125 Identities=18% Similarity=0.275 Sum_probs=98.0
Q ss_pred HhhcccCCCCeeEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhhcc-----cceeccccccCCCCCccc
Q 006834 470 KIDGLFHKGRYRNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYERGL-----IGTYQDWCEAFSTYPRTY 543 (629)
Q Consensus 470 ~~~~~~~~~~~R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~ergl-----i~~~~~~~e~f~~yp~t~ 543 (629)
.++..|.....+.|.|+|||.|.--+.|+.+ |. --|..+|++..|+..+.+|+. .|..++||-. +..
T Consensus 21 dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~--A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~-----~~~ 93 (257)
T COG4106 21 DLLARVPLERPRRVVDLGCGPGNSTELLARRWPD--AVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPE-----QPT 93 (257)
T ss_pred HHHhhCCccccceeeecCCCCCHHHHHHHHhCCC--CeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCC-----Ccc
Confidence 3455577788999999999999999999887 33 236788999999999999987 5778888832 568
Q ss_pred ceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEE--eCHH--HHHHHHHHHhcCCCeEEEe
Q 006834 544 DLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFR--DTVE--MLVKIRSITEGMRWKSQIM 604 (629)
Q Consensus 544 Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~--d~~~--~~~~~~~~~~~l~w~~~~~ 604 (629)
|||-++-+|--..+. ..+|-.+=--|.|||.+-+. |+.+ ...-|.+.++..-|...+-
T Consensus 94 dllfaNAvlqWlpdH---~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~ 155 (257)
T COG4106 94 DLLFANAVLQWLPDH---PELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELG 155 (257)
T ss_pred chhhhhhhhhhcccc---HHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhC
Confidence 999999999876666 66777777789999999886 4433 4677888888888876543
No 298
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=97.28 E-value=0.00099 Score=72.95 Aligned_cols=101 Identities=13% Similarity=-0.000 Sum_probs=74.1
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC---CeEEEEecCCCCC----CCCCCeeEEE
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV---PAMIGVISSKRLP----YPARAFDMAH 291 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~---~~~~~v~d~~~Lp----~pd~sFDlV~ 291 (629)
+++|||+-|=||.|+.+.+..|.. +++.+|.|...++.|+++ +. ...|+++|+..+- -...+||+|+
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~--~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGAS--EVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCC--ceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 449999999999999999999873 335559999999999976 32 3678888865432 2245999999
Q ss_pred ecCc-cc-------ccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 292 CSGC-LI-------PWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 292 ~s~~-L~-------h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
.-.- +. ....+-..++..+.++|+|||.+++++.
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~ 337 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSC 337 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 7221 10 0011123588999999999999999864
No 299
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=97.26 E-value=0.00028 Score=71.20 Aligned_cols=96 Identities=13% Similarity=0.049 Sum_probs=59.0
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHH-Hhhcccce--------------eccccccCCCCC----c
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAI-YERGLIGT--------------YQDWCEAFSTYP----R 541 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~-~ergli~~--------------~~~~~e~f~~yp----~ 541 (629)
..|||+|||.|-.|.+|++++. +|+.+|.++..++.+ .+.|+-.. +.-+|..|..++ .
T Consensus 36 ~rvLd~GCG~G~da~~LA~~G~---~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~ 112 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAEQGH---RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG 112 (213)
T ss_pred CeEEEeCCCchhHHHHHHhCCC---eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence 3699999999999999999965 455555554555543 34454211 111344443333 3
Q ss_pred ccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEE
Q 006834 542 TYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIF 580 (629)
Q Consensus 542 t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~ 580 (629)
+||++=..++|-. -+....+.++..|-|+|||||.+++
T Consensus 113 ~fD~i~D~~~~~~-l~~~~R~~~~~~l~~lLkpgG~~ll 150 (213)
T TIGR03840 113 PVDAVYDRAALIA-LPEEMRQRYAAHLLALLPPGARQLL 150 (213)
T ss_pred CcCEEEechhhcc-CCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 4665433333321 1444567799999999999997444
No 300
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.24 E-value=0.0049 Score=60.91 Aligned_cols=92 Identities=18% Similarity=0.178 Sum_probs=67.6
Q ss_pred eEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHH----cCC-CeEEEEecCCCCCCCCCCeeEEEecCccccc
Q 006834 225 TAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALE----RGV-PAMIGVISSKRLPYPARAFDMAHCSGCLIPW 299 (629)
Q Consensus 225 ~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~e----rg~-~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~ 299 (629)
+++|||+|.|.-+.-|+=..+. ..++.+|....-+.+.++ -+. ++.+....++. +....+||+|++-.+-
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~-~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv~--- 125 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPD-LQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARAVA--- 125 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TT-SEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESSS---
T ss_pred eEEecCCCCCChhHHHHHhCCC-CcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeehhc---
Confidence 7999999999888887765543 256778999877776653 244 47777777666 4557899999985543
Q ss_pred ccCHHHHHHHHHhcccCCcEEEEE
Q 006834 300 YMYDGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 300 ~~d~~~~L~el~RvLKPGG~liis 323 (629)
....++.-+...|++||.+++.
T Consensus 126 --~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 126 --PLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp --SHHHHHHHHGGGEEEEEEEEEE
T ss_pred --CHHHHHHHHHHhcCCCCEEEEE
Confidence 4567888999999999999886
No 301
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.24 E-value=0.002 Score=73.43 Aligned_cols=105 Identities=15% Similarity=0.090 Sum_probs=68.5
Q ss_pred CCeEEEeCCCCchHHHHHHHcCC-------cEeEEEeecCcHHHHHHHHHc----C-CCeEEEEecCCC--C---CCCCC
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDI-------LTMSFARRDTHEAQVQFALER----G-VPAMIGVISSKR--L---PYPAR 285 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~-------~~v~i~gvDiS~~~i~~A~er----g-~~~~~~v~d~~~--L---p~pd~ 285 (629)
..+|||.|||+|.|...++++.. ....+.++|+++..+..|+.+ + ....+...+... + .-..+
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~ 111 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYLD 111 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccccC
Confidence 45899999999999998887532 125678899999999998764 1 122333222111 1 11125
Q ss_pred CeeEEEecCcccccccCH---------------------------------------------HHHH-HHHHhcccCCcE
Q 006834 286 AFDMAHCSGCLIPWYMYD---------------------------------------------GLYL-LEVDRVLRPGGY 319 (629)
Q Consensus 286 sFDlV~~s~~L~h~~~d~---------------------------------------------~~~L-~el~RvLKPGG~ 319 (629)
.||+|+++.-+.-...+. ..++ ....++|+|||+
T Consensus 112 ~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f~~~~~~lL~~~G~ 191 (524)
T TIGR02987 112 LFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVFEEISLEIANKNGY 191 (524)
T ss_pred cccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHHHHHHHHhcCCCCE
Confidence 799999977654321100 0123 457899999999
Q ss_pred EEEEeCCC
Q 006834 320 WILSGPPI 327 (629)
Q Consensus 320 liis~P~~ 327 (629)
+.+..|..
T Consensus 192 ~~~I~P~s 199 (524)
T TIGR02987 192 VSIISPAS 199 (524)
T ss_pred EEEEEChH
Confidence 99998854
No 302
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.23 E-value=0.0022 Score=67.16 Aligned_cols=112 Identities=15% Similarity=0.084 Sum_probs=68.1
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc---CCCeE---EEE-ecCCCCC
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER---GVPAM---IGV-ISSKRLP 281 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er---g~~~~---~~v-~d~~~Lp 281 (629)
.+.|.+.++. -.+++|||+|||.|.-+..+.+.-.....++.+|.|+.|++.++.- ..... +.. .-....+
T Consensus 22 l~El~~r~p~--f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 99 (274)
T PF09243_consen 22 LSELRKRLPD--FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLP 99 (274)
T ss_pred HHHHHHhCcC--CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhccccc
Confidence 4444444433 2356899999999976555544322344678889999999988753 21111 100 0011122
Q ss_pred CCCCCeeEEEecCcccccccC-HHHHHHHHHhcccCCcEEEEEeCC
Q 006834 282 YPARAFDMAHCSGCLIPWYMY-DGLYLLEVDRVLRPGGYWILSGPP 326 (629)
Q Consensus 282 ~pd~sFDlV~~s~~L~h~~~d-~~~~L~el~RvLKPGG~liis~P~ 326 (629)
+. ..|+|+++++|..+... ...+++.+-+.+.+ +|+|+.|.
T Consensus 100 ~~--~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpG 141 (274)
T PF09243_consen 100 FP--PDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPG 141 (274)
T ss_pred CC--CCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCC
Confidence 22 33999999999888752 23466666666655 88888653
No 303
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=97.22 E-value=0.00062 Score=72.15 Aligned_cols=99 Identities=11% Similarity=0.167 Sum_probs=64.9
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh---ccc-----ceeccccccCCCCCccc----c-eee
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER---GLI-----GTYQDWCEAFSTYPRTY----D-LIH 547 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er---gli-----~~~~~~~e~f~~yp~t~----D-l~H 547 (629)
.+|||+|||+|.++..|++.-.-..+++++|.+..+|..+.++ ... ++..|-++.+ .+|..+ + ++.
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~-~~~~~~~~~~~~~~~ 143 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPL-ALPPEPAAGRRLGFF 143 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchh-hhhcccccCCeEEEE
Confidence 3699999999999999987621124688899998899888775 221 1222333222 233333 2 344
Q ss_pred ccccccccCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006834 548 ASGVFSIYQDRCDITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 548 ~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
+...|.... .-+...+|.++-+.|+|||.++|.
T Consensus 144 ~gs~~~~~~-~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 144 PGSTIGNFT-PEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred ecccccCCC-HHHHHHHHHHHHHhcCCCCEEEEe
Confidence 434444432 334567999999999999999985
No 304
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.21 E-value=0.0016 Score=70.71 Aligned_cols=107 Identities=10% Similarity=0.004 Sum_probs=69.5
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKRL 280 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~L 280 (629)
..+.+.+.+.+...+ .+|||++||+|.++..|++... .++++|+++++++.|+++ +. ++.+...|...+
T Consensus 184 ~~l~~~v~~~~~~~~---~~vlDl~~G~G~~sl~la~~~~---~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~ 257 (353)
T TIGR02143 184 IKMLEWACEVTQGSK---GDLLELYCGNGNFSLALAQNFR---RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEF 257 (353)
T ss_pred HHHHHHHHHHhhcCC---CcEEEEeccccHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHH
Confidence 444555555553221 2699999999999998887653 567789999999999875 33 577877776542
Q ss_pred C--------C---C-----CCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 281 P--------Y---P-----ARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 281 p--------~---p-----d~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
- + . ...||+|+.-.--..+ ...++..+. +|++.++++-
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~---~~~~l~~l~---~~~~ivYvsC 311 (353)
T TIGR02143 258 TQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAGL---DPDTCKLVQ---AYERILYISC 311 (353)
T ss_pred HHHHhhccccccccccccccCCCCEEEECCCCCCC---cHHHHHHHH---cCCcEEEEEc
Confidence 1 1 0 1237999875432111 234455544 4788888884
No 305
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.20 E-value=0.00098 Score=68.72 Aligned_cols=117 Identities=16% Similarity=0.108 Sum_probs=78.7
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc---------CCCeEEEEec
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER---------GVPAMIGVIS 276 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er---------g~~~~~~v~d 276 (629)
..|.+.+..........+++||=||-|.|..+..+++... ...++.+|+++..++.|++- ..++.+...|
T Consensus 60 ~~y~e~l~h~~~~~~~~p~~VLiiGgG~G~~~~ell~~~~-~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~D 138 (246)
T PF01564_consen 60 FIYHEMLVHPPLLLHPNPKRVLIIGGGDGGTARELLKHPP-VESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGD 138 (246)
T ss_dssp HHHHHHHHHHHHHHSSST-EEEEEESTTSHHHHHHTTSTT--SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEEST
T ss_pred HHHHHHHhhhHhhcCCCcCceEEEcCCChhhhhhhhhcCC-cceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhh
Confidence 4455555433222223466999999999999999998752 33677889999999999863 2467888877
Q ss_pred CCCCC-CCCC-CeeEEEecCccccccc----CHHHHHHHHHhcccCCcEEEEEe
Q 006834 277 SKRLP-YPAR-AFDMAHCSGCLIPWYM----YDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 277 ~~~Lp-~pd~-sFDlV~~s~~L~h~~~----d~~~~L~el~RvLKPGG~liis~ 324 (629)
....- -..+ +||+|+.-..- +... ....+++.+.+.|+|||.+++-.
T Consensus 139 g~~~l~~~~~~~yDvIi~D~~d-p~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 139 GRKFLKETQEEKYDVIIVDLTD-PDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp HHHHHHTSSST-EEEEEEESSS-TTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred hHHHHHhccCCcccEEEEeCCC-CCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 64431 2233 89999973322 1111 13579999999999999999875
No 306
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.16 E-value=0.001 Score=68.89 Aligned_cols=114 Identities=20% Similarity=0.199 Sum_probs=68.4
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHH--------------------cCC
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALE--------------------RGV 268 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~e--------------------rg~ 268 (629)
+..+.+.+.....++.++||||||.-.+-..-+.. ..-.|+..|.++..++..++ .|.
T Consensus 43 L~~l~~~f~~g~~~g~~llDiGsGPtiy~~lsa~~--~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~ 120 (256)
T PF01234_consen 43 LKNLHETFSSGGVKGETLLDIGSGPTIYQLLSACE--WFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGK 120 (256)
T ss_dssp HHHHHHHHHTSSS-EEEEEEES-TT--GGGTTGGG--TEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTS
T ss_pred HHHHHHHhCccCcCCCEEEEeCCCcHHHhhhhHHH--hhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCC
Confidence 44455555443344669999999985442222222 23356777888877664331 010
Q ss_pred -------------Ce-EEEEecCCCCC-CCC-----CCeeEEEecCcccccccCHH---HHHHHHHhcccCCcEEEEEe
Q 006834 269 -------------PA-MIGVISSKRLP-YPA-----RAFDMAHCSGCLIPWYMYDG---LYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 269 -------------~~-~~~v~d~~~Lp-~pd-----~sFDlV~~s~~L~h~~~d~~---~~L~el~RvLKPGG~liis~ 324 (629)
.+ .++..|..+.+ +.. ..||+|++++|++-...+.+ .+++.+.++|||||+|++.+
T Consensus 121 ~~~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~ 199 (256)
T PF01234_consen 121 REKWEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAG 199 (256)
T ss_dssp SSGHHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred cchhhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 01 24445655432 332 35999999999988877754 58999999999999999976
No 307
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=97.14 E-value=0.00059 Score=69.07 Aligned_cols=95 Identities=9% Similarity=0.026 Sum_probs=63.3
Q ss_pred EEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHH-HHhhcccce--------------eccccccCCCCC----cc
Q 006834 482 NVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGA-IYERGLIGT--------------YQDWCEAFSTYP----RT 542 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~-~~ergli~~--------------~~~~~e~f~~yp----~t 542 (629)
.|||.|||.|--|.+|++++. +|+.+|.++.-++. ..++|+-.. ++-++..+..++ .+
T Consensus 40 rvL~~gCG~G~da~~LA~~G~---~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~ 116 (218)
T PRK13255 40 RVLVPLCGKSLDMLWLAEQGH---EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLAD 116 (218)
T ss_pred eEEEeCCCChHhHHHHHhCCC---eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCCC
Confidence 699999999999999999976 56666766555554 356777322 112344344332 46
Q ss_pred cceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEE
Q 006834 543 YDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIF 580 (629)
Q Consensus 543 ~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~ 580 (629)
||++-..++|... +....+.++..|.++|+|||.+++
T Consensus 117 fd~v~D~~~~~~l-~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 117 VDAVYDRAALIAL-PEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred eeEEEehHhHhhC-CHHHHHHHHHHHHHHcCCCCeEEE
Confidence 7776654444422 334567899999999999996443
No 308
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.13 E-value=0.0022 Score=69.77 Aligned_cols=92 Identities=14% Similarity=0.081 Sum_probs=63.5
Q ss_pred CeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCCC-C-CC-------------
Q 006834 224 RTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKRL-P-YP------------- 283 (629)
Q Consensus 224 ~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~L-p-~p------------- 283 (629)
.+|||++||+|.++..|++... .++++|.++.+++.|+++ +. ++.+...|+... + +.
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~---~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~ 284 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR---RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDL 284 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC---EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccc
Confidence 3699999999999998887643 467779999999999875 33 577888776542 1 10
Q ss_pred -CCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 284 -ARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 284 -d~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
...||+|+.-.-... -...++..+.+ |++.++++-
T Consensus 285 ~~~~~D~v~lDPPR~G---~~~~~l~~l~~---~~~ivyvSC 320 (362)
T PRK05031 285 KSYNFSTIFVDPPRAG---LDDETLKLVQA---YERILYISC 320 (362)
T ss_pred cCCCCCEEEECCCCCC---CcHHHHHHHHc---cCCEEEEEe
Confidence 225899997553311 12345555543 788888884
No 309
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=97.12 E-value=0.0012 Score=65.82 Aligned_cols=120 Identities=19% Similarity=0.202 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHhh-c----ccCCCCeeEEEeecccchhHHhhhhC-CCeEEEEecCCCCCCCchHHHHhhcc------c
Q 006834 459 ELWKDRMTYYKKID-G----LFHKGRYRNVMDMNAYLGGFAAAMSK-YPVWVMNVVPFHSNPDTLGAIYERGL------I 526 (629)
Q Consensus 459 ~~w~~~v~~y~~~~-~----~~~~~~~R~vlD~~~g~Ggfaa~l~~-~~v~~mnv~~~~~~~~~l~~~~ergl------i 526 (629)
......++.|++.+ . .++...---||.+|||+|.-=-++-. +++-|.-+-| .+++-+++-.+-- +
T Consensus 51 ~~yne~~~~ykrelFs~i~~~~gk~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDp---n~~mee~~~ks~~E~k~~~~ 127 (252)
T KOG4300|consen 51 SIYNEIADSYKRELFSGIYYFLGKSGKGDVLEVGCGTGANFKFYPWKPINSVTCLDP---NEKMEEIADKSAAEKKPLQV 127 (252)
T ss_pred HHHHHHHHHHHHHHHhhhHHHhcccCccceEEecccCCCCcccccCCCCceEEEeCC---cHHHHHHHHHHHhhccCcce
Confidence 44455566666532 1 23333333489999999964444433 3444444444 3466666544321 2
Q ss_pred c-eeccccccCCCCC-cccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCH
Q 006834 527 G-TYQDWCEAFSTYP-RTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTV 584 (629)
Q Consensus 527 ~-~~~~~~e~f~~yp-~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~ 584 (629)
. .+|.-.|.+...+ .+||.|-+.-+.- +.-+....|-|+-|||||||.+||-+..
T Consensus 128 ~~fvva~ge~l~~l~d~s~DtVV~TlvLC---Sve~~~k~L~e~~rlLRpgG~iifiEHv 184 (252)
T KOG4300|consen 128 ERFVVADGENLPQLADGSYDTVVCTLVLC---SVEDPVKQLNEVRRLLRPGGRIIFIEHV 184 (252)
T ss_pred EEEEeechhcCcccccCCeeeEEEEEEEe---ccCCHHHHHHHHHHhcCCCcEEEEEecc
Confidence 2 4444456777666 8999866522221 2234456999999999999999997554
No 310
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.11 E-value=0.0025 Score=65.86 Aligned_cols=84 Identities=17% Similarity=0.092 Sum_probs=65.2
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC--C----CeEEEEecCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG--V----PAMIGVISSKR 279 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg--~----~~~~~v~d~~~ 279 (629)
...++.|.+-.+.++.. .|||+|.|||.++..|++.+..++.+ ++++.|+....+|. . .+.+.++|...
T Consensus 44 p~v~~~I~~ka~~k~tD--~VLEvGPGTGnLT~~lLe~~kkVvA~---E~Dprmvael~krv~gtp~~~kLqV~~gD~lK 118 (315)
T KOG0820|consen 44 PLVIDQIVEKADLKPTD--VVLEVGPGTGNLTVKLLEAGKKVVAV---EIDPRMVAELEKRVQGTPKSGKLQVLHGDFLK 118 (315)
T ss_pred HHHHHHHHhccCCCCCC--EEEEeCCCCCHHHHHHHHhcCeEEEE---ecCcHHHHHHHHHhcCCCccceeeEEeccccc
Confidence 34466777666666666 99999999999999999999876655 99999999998873 2 25667777776
Q ss_pred CCCCCCCeeEEEecCcc
Q 006834 280 LPYPARAFDMAHCSGCL 296 (629)
Q Consensus 280 Lp~pd~sFDlV~~s~~L 296 (629)
.++| .||.++++.-.
T Consensus 119 ~d~P--~fd~cVsNlPy 133 (315)
T KOG0820|consen 119 TDLP--RFDGCVSNLPY 133 (315)
T ss_pred CCCc--ccceeeccCCc
Confidence 6655 69999986544
No 311
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.10 E-value=0.001 Score=62.70 Aligned_cols=87 Identities=15% Similarity=0.100 Sum_probs=62.7
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC----CCeEEEEecCCCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG----VPAMIGVISSKRLP 281 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg----~~~~~~v~d~~~Lp 281 (629)
......|.+......| +.++|+|||.|.+.....-.+.. .+.|+|+.+++++.+.++. +++.+.+++...+-
T Consensus 34 asM~~~Ih~TygdiEg--kkl~DLgcgcGmLs~a~sm~~~e--~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle 109 (185)
T KOG3420|consen 34 ASMLYTIHNTYGDIEG--KKLKDLGCGCGMLSIAFSMPKNE--SVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLE 109 (185)
T ss_pred HHHHHHHHhhhccccC--cchhhhcCchhhhHHHhhcCCCc--eEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchh
Confidence 3334445555443334 48999999999887554444433 5577799999999998663 45678888888877
Q ss_pred CCCCCeeEEEecCcc
Q 006834 282 YPARAFDMAHCSGCL 296 (629)
Q Consensus 282 ~pd~sFDlV~~s~~L 296 (629)
+..+.||.++.+.-+
T Consensus 110 ~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 110 LKGGIFDTAVINPPF 124 (185)
T ss_pred ccCCeEeeEEecCCC
Confidence 778999999987755
No 312
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.10 E-value=0.0017 Score=63.26 Aligned_cols=141 Identities=19% Similarity=0.266 Sum_probs=73.1
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCCC-----eEEEEecCCCCCCCchHHHHhhcccc---eeccccccCCCCCccccee
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKYP-----VWVMNVVPFHSNPDTLGAIYERGLIG---TYQDWCEAFSTYPRTYDLI 546 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~~-----v~~mnv~~~~~~~~~l~~~~ergli~---~~~~~~e~f~~yp~t~Dl~ 546 (629)
+..+.-.+|||+||+.|||..++.++. |+.+-+.|.+.. .....+ +|=+- +.....+.+..-.+.+|+|
T Consensus 19 ~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~-~~~~~i--~~d~~~~~~~~~i~~~~~~~~~~~dlv 95 (181)
T PF01728_consen 19 FKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPL-QNVSFI--QGDITNPENIKDIRKLLPESGEKFDLV 95 (181)
T ss_dssp S-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS--TTEEBT--TGGGEEEEHSHHGGGSHGTTTCSESEE
T ss_pred CCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccc-cceeee--ecccchhhHHHhhhhhccccccCccee
Confidence 556677899999999999999999886 345555544211 111111 22221 0111111222112589999
Q ss_pred eccccccccCCCcCHHH--------HHHHHhhcccCCcEEEEE-----eCHHHHHHHHHHHhcCCCeEEEeecCCCCCCC
Q 006834 547 HASGVFSIYQDRCDITN--------ILLEMDRILRPEGTVIFR-----DTVEMLVKIRSITEGMRWKSQIMDHESGPFNP 613 (629)
Q Consensus 547 H~~~~fs~~~~~c~~~~--------~l~e~dRiLrPgG~~i~~-----d~~~~~~~~~~~~~~l~w~~~~~~~e~~~~~~ 613 (629)
-|++.+.....+-.-+. .|.=+-..|||||.+|+. +..+.+..++...+.+++- --.-.++...
T Consensus 96 ~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~~v~~~---Kp~~sr~~s~ 172 (181)
T PF01728_consen 96 LSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFSKVKIV---KPPSSRSESS 172 (181)
T ss_dssp EE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHHHEEEE---E-TTSBTTCB
T ss_pred ccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCeEEEEE---ECcCCCCCcc
Confidence 99987664332211111 222334679999998884 2235666666666654332 1233455568
Q ss_pred ceEEEEEe
Q 006834 614 EKILFAAK 621 (629)
Q Consensus 614 e~~l~~~K 621 (629)
|.-|||.+
T Consensus 173 E~Ylv~~~ 180 (181)
T PF01728_consen 173 EEYLVCRG 180 (181)
T ss_dssp EEEEESEE
T ss_pred EEEEEEcC
Confidence 88998864
No 313
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.10 E-value=0.003 Score=67.93 Aligned_cols=126 Identities=17% Similarity=0.124 Sum_probs=95.0
Q ss_pred cCCeeeecCCCCCCCCchHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc-
Q 006834 188 EGHRFRFPGGGTTFPNGADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER- 266 (629)
Q Consensus 188 ~g~~~~Fpgggt~f~~ga~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er- 266 (629)
+|-.|.+.-.-.||..+...-...+.++... |. +|||+-+|.|.|+..++..+... +.++|+++.+++..+++
T Consensus 158 ~G~~f~vD~~Kv~Fsprl~~ER~Rva~~v~~--GE--~V~DmFAGVGpfsi~~Ak~g~~~--V~A~diNP~A~~~L~eNi 231 (341)
T COG2520 158 NGCRFKVDVAKVYFSPRLSTERARVAELVKE--GE--TVLDMFAGVGPFSIPIAKKGRPK--VYAIDINPDAVEYLKENI 231 (341)
T ss_pred CCEEEEEchHHeEECCCchHHHHHHHhhhcC--CC--EEEEccCCcccchhhhhhcCCce--EEEEecCHHHHHHHHHHH
Confidence 3445555555567777766666667766654 44 99999999999999999998652 56779999999999875
Q ss_pred ---CC--CeEEEEecCCCCCCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 267 ---GV--PAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 267 ---g~--~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
+. .+....+|........+.||-|++.... ....++....+.|++||.+.+..
T Consensus 232 ~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~-----~a~~fl~~A~~~~k~~g~iHyy~ 289 (341)
T COG2520 232 RLNKVEGRVEPILGDAREVAPELGVADRIIMGLPK-----SAHEFLPLALELLKDGGIIHYYE 289 (341)
T ss_pred HhcCccceeeEEeccHHHhhhccccCCEEEeCCCC-----cchhhHHHHHHHhhcCcEEEEEe
Confidence 22 2567788888877655889999975532 44678889999999999998764
No 314
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=97.10 E-value=0.0035 Score=63.03 Aligned_cols=142 Identities=15% Similarity=0.121 Sum_probs=90.2
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcccc--eeccccccCCCCCcccceeeccccc
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGLIG--TYQDWCEAFSTYPRTYDLIHASGVF 552 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergli~--~~~~~~e~f~~yp~t~Dl~H~~~~f 552 (629)
+..+.-+-|||+|||+|--|+.|.+.+- -.+.+|.++.||.++.||-+=| ++.|..|.+++=|.|||-+-+.+-.
T Consensus 46 lp~~~~~~iLDIGCGsGLSg~vL~~~Gh---~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAv 122 (270)
T KOG1541|consen 46 LPGPKSGLILDIGCGSGLSGSVLSDSGH---QWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAV 122 (270)
T ss_pred CCCCCCcEEEEeccCCCcchheeccCCc---eEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeee
Confidence 4444566799999999999999998863 1245677778999999976654 3348889999999999953321111
Q ss_pred ---cccCCCcC-----HHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCCeE----EEeecCCCCCCCceEEEE
Q 006834 553 ---SIYQDRCD-----ITNILLEMDRILRPEGTVIFRDTVEMLVKIRSITEGMRWKS----QIMDHESGPFNPEKILFA 619 (629)
Q Consensus 553 ---s~~~~~c~-----~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~l~w~~----~~~~~e~~~~~~e~~l~~ 619 (629)
=+....|. +-.++--+...|++|+..++.=-.+....++.|...-.|.- .++|.-.+...+-..||.
T Consensus 123 QWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aGF~GGlvVd~Pes~k~kK~yLVL 201 (270)
T KOG1541|consen 123 QWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAGFGGGLVVDWPESTKNKKYYLVL 201 (270)
T ss_pred eeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhhccCCceeeecccccccceeEEEE
Confidence 11122233 33356678999999999999844443344444444444433 245543333334444444
No 315
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.07 E-value=0.0082 Score=61.14 Aligned_cols=152 Identities=18% Similarity=0.175 Sum_probs=100.6
Q ss_pred CchHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEE-EEecCCCCC
Q 006834 203 NGADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMI-GVISSKRLP 281 (629)
Q Consensus 203 ~ga~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~-~v~d~~~Lp 281 (629)
+|+-.+...+... .. .-.++.+||+|+-||.|+..++++|.. .++++|..-.++..-.+..+.+.. ...+...+.
T Consensus 62 RG~~KL~~ale~F-~l-~~k~kv~LDiGsSTGGFTd~lLq~gAk--~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~ 137 (245)
T COG1189 62 RGGLKLEKALEEF-EL-DVKGKVVLDIGSSTGGFTDVLLQRGAK--HVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLT 137 (245)
T ss_pred cHHHHHHHHHHhc-Cc-CCCCCEEEEecCCCccHHHHHHHcCCc--EEEEEEccCCccCHhHhcCCcEEEEecCChhhCC
Confidence 3444444444433 32 223459999999999999999999876 557889999888877766655443 223333332
Q ss_pred --CCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeCCCCcccc----ccCccCcchhhhhHHHHHHHHHH
Q 006834 282 --YPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPPIHWKKY----WRGWERTKEDLKQEQDTIEDIAK 355 (629)
Q Consensus 282 --~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P~~~w~~~----~~~w~~~~e~l~~~~~~ie~l~~ 355 (629)
.-.+..|+|+|--.++. ...+|..+..+|+|+|.++.-.-|-.-..+ .++--++++........+.+.+.
T Consensus 138 ~~~~~~~~d~~v~DvSFIS----L~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~ 213 (245)
T COG1189 138 PEDFTEKPDLIVIDVSFIS----LKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAK 213 (245)
T ss_pred HHHcccCCCeEEEEeehhh----HHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHh
Confidence 11236789999766643 457899999999999988886533221111 22334556666667777888888
Q ss_pred Hhcceee
Q 006834 356 RLCWKKL 362 (629)
Q Consensus 356 ~l~w~~v 362 (629)
.++|...
T Consensus 214 ~~g~~~~ 220 (245)
T COG1189 214 ELGFQVK 220 (245)
T ss_pred hcCcEEe
Confidence 8888654
No 316
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=97.05 E-value=0.0024 Score=67.20 Aligned_cols=113 Identities=10% Similarity=0.029 Sum_probs=73.3
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C---CCeEEEEecCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G---VPAMIGVISSK 278 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g---~~~~~~v~d~~ 278 (629)
+.-...+.+... +++|||+-|=||.|+.+.+..|.. .++.+|.|..+++.|+++ + ....+.+.|+.
T Consensus 112 R~nR~~v~~~~~-----gkrvLnlFsYTGgfsv~Aa~gGA~--~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf 184 (286)
T PF10672_consen 112 RENRKWVRKYAK-----GKRVLNLFSYTGGFSVAAAAGGAK--EVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVF 184 (286)
T ss_dssp HHHHHHHHHHCT-----TCEEEEET-TTTHHHHHHHHTTES--EEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HH
T ss_pred HhhHHHHHHHcC-----CCceEEecCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHH
Confidence 333445555432 349999999999999998888754 345669999999999975 3 24678877764
Q ss_pred CC-C--CCCCCeeEEEecCc-cc----ccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 279 RL-P--YPARAFDMAHCSGC-LI----PWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 279 ~L-p--~pd~sFDlV~~s~~-L~----h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
.. . -..++||+|++-.- +. ....+-..++..+.++|+|||++++...
T Consensus 185 ~~l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 185 KFLKRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp HHHHHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred HHHHHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 32 1 12468999998221 10 1111224578889999999999988754
No 317
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=97.03 E-value=0.0097 Score=58.64 Aligned_cols=142 Identities=20% Similarity=0.217 Sum_probs=87.2
Q ss_pred Ccchhhchhh--HHHHHHHHHHHH-HhhcccCCCCeeEEEeecccchhHHhhhhC-CCeEEEEecCCCCCC---CchHHH
Q 006834 448 GITAEKLRED--NELWKDRMTYYK-KIDGLFHKGRYRNVMDMNAYLGGFAAAMSK-YPVWVMNVVPFHSNP---DTLGAI 520 (629)
Q Consensus 448 ~~~~~~f~~d--~~~w~~~v~~y~-~~~~~~~~~~~R~vlD~~~g~Ggfaa~l~~-~~v~~mnv~~~~~~~---~~l~~~ 520 (629)
|+..+.|..| ...-|+-|..-- ..| .+.++.+ ++|+|||+|+.+-.++- .+. .-|..++..+ ++.+.+
T Consensus 3 gipD~~F~~~~~~p~TK~EIRal~ls~L-~~~~g~~--l~DIGaGtGsi~iE~a~~~p~--~~v~AIe~~~~a~~~~~~N 77 (187)
T COG2242 3 GIPDELFERDEGGPMTKEEIRALTLSKL-RPRPGDR--LWDIGAGTGSITIEWALAGPS--GRVIAIERDEEALELIERN 77 (187)
T ss_pred CCCchhhccCCCCCCcHHHHHHHHHHhh-CCCCCCE--EEEeCCCccHHHHHHHHhCCC--ceEEEEecCHHHHHHHHHH
Confidence 4445556666 344454444211 112 3566764 99999999998876651 121 2334444432 233333
Q ss_pred Hhh-cc--cceecccc-ccCCCCCcccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEE-eCHHHHHHHHHHHh
Q 006834 521 YER-GL--IGTYQDWC-EAFSTYPRTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFR-DTVEMLVKIRSITE 595 (629)
Q Consensus 521 ~er-gl--i~~~~~~~-e~f~~yp~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~-d~~~~~~~~~~~~~ 595 (629)
.+| |+ +-+...+- +.++..| ++|.+-. . ..-.++.||.....-|||||.+|.. -+.+...++-+.++
T Consensus 78 ~~~fg~~n~~vv~g~Ap~~L~~~~-~~daiFI-----G--Gg~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~ 149 (187)
T COG2242 78 AARFGVDNLEVVEGDAPEALPDLP-SPDAIFI-----G--GGGNIEEILEAAWERLKPGGRLVANAITLETLAKALEALE 149 (187)
T ss_pred HHHhCCCcEEEEeccchHhhcCCC-CCCEEEE-----C--CCCCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHH
Confidence 333 32 22333333 5566666 7776654 1 1267899999999999999999996 56677888888888
Q ss_pred cCCC-eEE
Q 006834 596 GMRW-KSQ 602 (629)
Q Consensus 596 ~l~w-~~~ 602 (629)
.+.+ ++.
T Consensus 150 ~~g~~ei~ 157 (187)
T COG2242 150 QLGGREIV 157 (187)
T ss_pred HcCCceEE
Confidence 8888 554
No 318
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=97.03 E-value=0.0012 Score=69.84 Aligned_cols=126 Identities=17% Similarity=0.176 Sum_probs=68.3
Q ss_pred EEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHH----HHhhcccceeccccccCCCCC-cccceeeccccccccC
Q 006834 482 NVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGA----IYERGLIGTYQDWCEAFSTYP-RTYDLIHASGVFSIYQ 556 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~----~~ergli~~~~~~~e~f~~yp-~t~Dl~H~~~~fs~~~ 556 (629)
+|||+|||+|-.|-+-++.+. -.|+.+|..+..+.. +..-|+-.-+. +. .....+ ..||+|-|+=+..
T Consensus 164 ~vLDvG~GSGILaiaA~klGA--~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~-v~-~~~~~~~~~~dlvvANI~~~--- 236 (295)
T PF06325_consen 164 RVLDVGCGSGILAIAAAKLGA--KKVVAIDIDPLAVEAARENAELNGVEDRIE-VS-LSEDLVEGKFDLVVANILAD--- 236 (295)
T ss_dssp EEEEES-TTSHHHHHHHHTTB--SEEEEEESSCHHHHHHHHHHHHTT-TTCEE-ES-CTSCTCCS-EEEEEEES-HH---
T ss_pred EEEEeCCcHHHHHHHHHHcCC--CeEEEecCCHHHHHHHHHHHHHcCCCeeEE-EE-EecccccccCCEEEECCCHH---
Confidence 799999999977655444432 123333443333333 33344422111 11 123334 8999988722211
Q ss_pred CCcCHHHHHHHHhhcccCCcEEEEEeCH-HHHHHHHHHHhcCCCeEEEeecCCCCCCCceEEEEEec
Q 006834 557 DRCDITNILLEMDRILRPEGTVIFRDTV-EMLVKIRSITEGMRWKSQIMDHESGPFNPEKILFAAKT 622 (629)
Q Consensus 557 ~~c~~~~~l~e~dRiLrPgG~~i~~d~~-~~~~~~~~~~~~l~w~~~~~~~e~~~~~~e~~l~~~K~ 622 (629)
-+..++-++.+.|+|||++|++--. +....|.+.++. .|+..-...+ +.-..|+++|+
T Consensus 237 ---vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~~~~~----~~W~~l~~~Kk 295 (295)
T PF06325_consen 237 ---VLLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ-GFELVEEREE----GEWVALVFKKK 295 (295)
T ss_dssp ---HHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEEEEEEEE----TTEEEEEEEE-
T ss_pred ---HHHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC-CCEEEEEEEE----CCEEEEEEEeC
Confidence 1234556678999999999998432 234566666666 6766544333 24567777775
No 319
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.03 E-value=0.00038 Score=66.65 Aligned_cols=136 Identities=21% Similarity=0.263 Sum_probs=86.6
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc-CCCeEE--E---Eec----CCCCCCCCCCeeEEEe
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER-GVPAMI--G---VIS----SKRLPYPARAFDMAHC 292 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er-g~~~~~--~---v~d----~~~Lp~pd~sFDlV~~ 292 (629)
+++||++|.|--.++..|....+...++.-.|.+++.++..++- ..+..+ . ++. ..+......+||+|+|
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence 45899999996666666655555556777889999998877652 212101 0 000 1111223468999999
Q ss_pred cCcccccccCHHHHHHHHHhcccCCcEEEEEeCCCCccccccCccCcchhhhhHHHHHHHHHHHhccee-ecccCceEEE
Q 006834 293 SGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIEDIAKRLCWKK-LIEKNDLAIW 371 (629)
Q Consensus 293 s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P~~~w~~~~~~w~~~~e~l~~~~~~ie~l~~~l~w~~-v~~~~~~aiw 371 (629)
+.|+ -+.+..+.++..+.+.|+|.|.-++..| +.+..++. +.+.....++.. +.+..+.+||
T Consensus 110 ADCl-FfdE~h~sLvdtIk~lL~p~g~Al~fsP------------RRg~sL~k----F~de~~~~gf~v~l~enyde~iw 172 (201)
T KOG3201|consen 110 ADCL-FFDEHHESLVDTIKSLLRPSGRALLFSP------------RRGQSLQK----FLDEVGTVGFTVCLEENYDEAIW 172 (201)
T ss_pred ccch-hHHHHHHHHHHHHHHHhCcccceeEecC------------cccchHHH----HHHHHHhceeEEEecccHhHHHH
Confidence 9999 5554567899999999999999888866 22233332 444445555544 3455566788
Q ss_pred eccC
Q 006834 372 QKPI 375 (629)
Q Consensus 372 qKp~ 375 (629)
||-.
T Consensus 173 qrh~ 176 (201)
T KOG3201|consen 173 QRHG 176 (201)
T ss_pred HHHH
Confidence 7643
No 320
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=96.99 E-value=0.0034 Score=66.34 Aligned_cols=98 Identities=11% Similarity=0.052 Sum_probs=63.1
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC--CeEEEEecCCCCCCCCCCeeEEEecCcc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV--PAMIGVISSKRLPYPARAFDMAHCSGCL 296 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~~~Lp~pd~sFDlV~~s~~L 296 (629)
.+.|||+|||+|.++...++.|.. .+.+++.| +|.+.|++. .. .+.+..+..+.+.+| ++.|+|++-..-
T Consensus 178 ~kiVlDVGaGSGILS~FAaqAGA~--~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG 253 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQAGAK--KVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMG 253 (517)
T ss_pred CcEEEEecCCccHHHHHHHHhCcc--eEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEeccch
Confidence 458999999999999888888875 45666776 677777753 11 234444455665555 689999984332
Q ss_pred cccccC-HHHHHHHHHhcccCCcEEEEEe
Q 006834 297 IPWYMY-DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 297 ~h~~~d-~~~~L~el~RvLKPGG~liis~ 324 (629)
.-+..+ --....-.+|.|+|.|.++=+.
T Consensus 254 ~mL~NERMLEsYl~Ark~l~P~GkMfPT~ 282 (517)
T KOG1500|consen 254 YMLVNERMLESYLHARKWLKPNGKMFPTV 282 (517)
T ss_pred hhhhhHHHHHHHHHHHhhcCCCCcccCcc
Confidence 112211 1112233459999999987653
No 321
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=96.99 E-value=0.00098 Score=67.88 Aligned_cols=100 Identities=20% Similarity=0.327 Sum_probs=68.2
Q ss_pred ccCCCCeeEEEeecccchhHHhhhhCC--C--eEEEEecCCCCCCCchHHHHhhcccceeccccccCCCCCcccceeecc
Q 006834 474 LFHKGRYRNVMDMNAYLGGFAAAMSKY--P--VWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAFSTYPRTYDLIHAS 549 (629)
Q Consensus 474 ~~~~~~~R~vlD~~~g~Ggfaa~l~~~--~--v~~mnv~~~~~~~~~l~~~~ergli~~~~~~~e~f~~yp~t~Dl~H~~ 549 (629)
.......++|+|+|+|.|.++.+++++ + ++++-. + ..++.+.+..=|...- ..-|.++|. +|++...
T Consensus 95 ~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-----p-~v~~~~~~~~rv~~~~--gd~f~~~P~-~D~~~l~ 165 (241)
T PF00891_consen 95 AFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-----P-EVIEQAKEADRVEFVP--GDFFDPLPV-ADVYLLR 165 (241)
T ss_dssp HSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE------H-HHHCCHHHTTTEEEEE--S-TTTCCSS-ESEEEEE
T ss_pred cccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-----H-hhhhcccccccccccc--ccHHhhhcc-ccceeee
Confidence 456678899999999999999999764 3 344433 2 3333444421122211 134588999 9999988
Q ss_pred ccccccCCCcCHHHHHHHHhhcccCC--cEEEEEeC
Q 006834 550 GVFSIYQDRCDITNILLEMDRILRPE--GTVIFRDT 583 (629)
Q Consensus 550 ~~fs~~~~~c~~~~~l~e~dRiLrPg--G~~i~~d~ 583 (629)
+++-.|.+. +...||..+-+.|+|| |.++|-|.
T Consensus 166 ~vLh~~~d~-~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 166 HVLHDWSDE-DCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp SSGGGS-HH-HHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred hhhhhcchH-HHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 888877653 4567999999999999 99999754
No 322
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=96.99 E-value=0.0024 Score=67.34 Aligned_cols=95 Identities=19% Similarity=0.268 Sum_probs=70.0
Q ss_pred eEEEeecccchhHHhhhhCCCe-EEEEecCCCCCCCchHHHHhhccccee---ccc--c-ccCCCCCcccceeecccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPV-WVMNVVPFHSNPDTLGAIYERGLIGTY---QDW--C-EAFSTYPRTYDLIHASGVFS 553 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v-~~mnv~~~~~~~~~l~~~~ergli~~~---~~~--~-e~f~~yp~t~Dl~H~~~~fs 553 (629)
|.|||+|||-|-+.-.|+..+- .|+-+=|.... ..++-+-+-++|.- |-. . |.++. ..+||+|=|.||+=
T Consensus 117 k~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf--~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVLY 193 (315)
T PF08003_consen 117 KRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLF--YLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVLY 193 (315)
T ss_pred CEEEEecCCCcHHHHHHhhcCCCEEEEECCChHH--HHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeehh
Confidence 4699999999999999998865 55666665443 66666666666521 111 1 44454 68999999999875
Q ss_pred ccCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006834 554 IYQDRCDITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 554 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
+ |=+--+.|.++-..|||||.+|+-
T Consensus 194 --H-rr~Pl~~L~~Lk~~L~~gGeLvLE 218 (315)
T PF08003_consen 194 --H-RRSPLDHLKQLKDSLRPGGELVLE 218 (315)
T ss_pred --c-cCCHHHHHHHHHHhhCCCCEEEEE
Confidence 3 446678999999999999999984
No 323
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.96 E-value=0.0058 Score=65.40 Aligned_cols=112 Identities=13% Similarity=0.046 Sum_probs=71.9
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCC---cEeEEEeecCcHHHHHHHHHcC-----CCeEE--EEecCC
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDI---LTMSFARRDTHEAQVQFALERG-----VPAMI--GVISSK 278 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~---~~v~i~gvDiS~~~i~~A~erg-----~~~~~--~v~d~~ 278 (629)
...|.+.++. ...++|+|||+|.=+..|++... ..+.++++|+|.++++.+.++- +.+.+ ..+|..
T Consensus 67 ~~~Ia~~i~~----~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~ 142 (319)
T TIGR03439 67 SSDIAASIPS----GSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYD 142 (319)
T ss_pred HHHHHHhcCC----CCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHH
Confidence 4455555432 33799999999988777665421 1346789999999999988652 22444 344432
Q ss_pred C----CCC--CCCCeeEEEec-CcccccccC-HHHHHHHHHh-cccCCcEEEEEe
Q 006834 279 R----LPY--PARAFDMAHCS-GCLIPWYMY-DGLYLLEVDR-VLRPGGYWILSG 324 (629)
Q Consensus 279 ~----Lp~--pd~sFDlV~~s-~~L~h~~~d-~~~~L~el~R-vLKPGG~liis~ 324 (629)
. ++- ......+++.- .++-++.+. ...+|+++.+ .|+|||.|++..
T Consensus 143 ~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 143 DGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred HHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 2 221 12345676653 345444422 3468999999 999999999964
No 324
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=96.96 E-value=0.00084 Score=66.83 Aligned_cols=110 Identities=22% Similarity=0.300 Sum_probs=69.5
Q ss_pred EEEeecccchhHHhhhhCC-CeEEEEecCCCCCCC----chHHHHhhcc--cceeccccccCC---C-C-Ccccceeecc
Q 006834 482 NVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPD----TLGAIYERGL--IGTYQDWCEAFS---T-Y-PRTYDLIHAS 549 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~----~l~~~~ergl--i~~~~~~~e~f~---~-y-p~t~Dl~H~~ 549 (629)
.+||+|||.|.|..+|+.. |= .|++.++-..+ .+..+..+|| +.+++ |.+.. . + |.+.|.||.
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd--~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~--~da~~~l~~~~~~~~v~~i~i- 94 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPD--INFIGIEIRKKRVAKALRKAEKRGLKNVRFLR--GDARELLRRLFPPGSVDRIYI- 94 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTT--SEEEEEES-HHHHHHHHHHHHHHTTSSEEEEE--S-CTTHHHHHSTTTSEEEEEE-
T ss_pred eEEEecCCCCHHHHHHHHHCCC--CCEEEEecchHHHHHHHHHHHhhcccceEEEE--ccHHHHHhhcccCCchheEEE-
Confidence 7999999999999999754 11 25555554433 3445556677 33333 23322 1 2 388998887
Q ss_pred ccccc-------cCCCcCHHHHHHHHhhcccCCcEEEE-EeCHHHHHHHHHHHhcC
Q 006834 550 GVFSI-------YQDRCDITNILLEMDRILRPEGTVIF-RDTVEMLVKIRSITEGM 597 (629)
Q Consensus 550 ~~fs~-------~~~~c~~~~~l~e~dRiLrPgG~~i~-~d~~~~~~~~~~~~~~l 597 (629)
.|.. .+.|=--+.+|.++-|+|+|||.+.| ||..+....+.+.+...
T Consensus 95 -~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~ 149 (195)
T PF02390_consen 95 -NFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEES 149 (195)
T ss_dssp -ES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHH
T ss_pred -eCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhc
Confidence 4541 12232336699999999999999998 57777777777777664
No 325
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=96.95 E-value=0.005 Score=65.05 Aligned_cols=121 Identities=18% Similarity=0.239 Sum_probs=74.9
Q ss_pred CeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcc---cc-eeccccccCCCCC--cccceeeccccc
Q 006834 479 RYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGL---IG-TYQDWCEAFSTYP--RTYDLIHASGVF 552 (629)
Q Consensus 479 ~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergl---i~-~~~~~~e~f~~yp--~t~Dl~H~~~~f 552 (629)
.-+||||+|||.|-+|-|.++.+. --|+.+|..+-.++++.|--. +. ..+.=+-.....| +.||+|-|+=|
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA--~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANIL- 238 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGA--KKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANIL- 238 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCC--ceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhh-
Confidence 456899999999999988888765 335566665556666665322 12 1111111223344 58999887110
Q ss_pred cccCCCcCHHHHHHHHhhcccCCcEEEEEeCH-HHHHHHHHHHhcCCCeEEEeecC
Q 006834 553 SIYQDRCDITNILLEMDRILRPEGTVIFRDTV-EMLVKIRSITEGMRWKSQIMDHE 607 (629)
Q Consensus 553 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~-~~~~~~~~~~~~l~w~~~~~~~e 607 (629)
. --+..+.-++-|.|||||++|++--. +..+.+...+.+-.|++.-+...
T Consensus 239 A-----~vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~~~~ 289 (300)
T COG2264 239 A-----EVLVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEVLER 289 (300)
T ss_pred H-----HHHHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEEEec
Confidence 0 01123445667999999999998543 23567777777777777654443
No 326
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=96.93 E-value=0.0014 Score=70.17 Aligned_cols=117 Identities=15% Similarity=0.202 Sum_probs=70.9
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cccceeccccccCCCCC---cccceee
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GLIGTYQDWCEAFSTYP---RTYDLIH 547 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gli~~~~~~~e~f~~yp---~t~Dl~H 547 (629)
+.++. .|||.+||+|++...++..+. ++..+|....++..+.+. |+-. ++-.+..+...| .+||+|-
T Consensus 180 ~~~g~--~vLDp~cGtG~~lieaa~~~~---~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~~~~~~D~Iv 253 (329)
T TIGR01177 180 VTEGD--RVLDPFCGTGGFLIEAGLMGA---KVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPLSSESVDAIA 253 (329)
T ss_pred CCCcC--EEEECCCCCCHHHHHHHHhCC---eEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCcccCCCCEEE
Confidence 44554 599999999999766554433 455667665666543332 4422 111123333333 6899998
Q ss_pred ccccccc---cCC---CcCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCC
Q 006834 548 ASGVFSI---YQD---RCDITNILLEMDRILRPEGTVIFRDTVEMLVKIRSITEGMRW 599 (629)
Q Consensus 548 ~~~~fs~---~~~---~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~l~w 599 (629)
++-=|.. ... ......+|.|+-|+|+|||++++--+.+ ..++++++.--|
T Consensus 254 ~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~--~~~~~~~~~~g~ 309 (329)
T TIGR01177 254 TDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR--IDLESLAEDAFR 309 (329)
T ss_pred ECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC--CCHHHHHhhcCc
Confidence 8643332 111 1235779999999999999998764432 144556666666
No 327
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.93 E-value=0.0057 Score=61.91 Aligned_cols=95 Identities=16% Similarity=0.050 Sum_probs=70.0
Q ss_pred eEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC--CeEEEEecCCC-C-----CCCCCCeeEEEe
Q 006834 225 TAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV--PAMIGVISSKR-L-----PYPARAFDMAHC 292 (629)
Q Consensus 225 ~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~~~-L-----p~pd~sFDlV~~ 292 (629)
+.||||.=||.-+..++..-+..-.++.+|++++..+.+.+- +. .+.+.++.+.. | ....++||+++.
T Consensus 76 ~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfaFv 155 (237)
T KOG1663|consen 76 RTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFAFV 155 (237)
T ss_pred eEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEEEE
Confidence 899999999987777777654444566779999998888642 32 35666655422 2 135789999984
Q ss_pred cCcccccccCHHHHHHHHHhcccCCcEEEEE
Q 006834 293 SGCLIPWYMYDGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 293 s~~L~h~~~d~~~~L~el~RvLKPGG~liis 323 (629)
.||..+-..+..++.++||+||.+++.
T Consensus 156 ----DadK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 156 ----DADKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred ----ccchHHHHHHHHHHHhhcccccEEEEe
Confidence 456545557899999999999999996
No 328
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=96.93 E-value=0.00033 Score=62.60 Aligned_cols=98 Identities=21% Similarity=0.298 Sum_probs=61.2
Q ss_pred EEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc---cceec-cccccCCCCC-cccceeeccccc
Q 006834 482 NVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL---IGTYQ-DWCEAFSTYP-RTYDLIHASGVF 552 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl---i~~~~-~~~e~f~~yp-~t~Dl~H~~~~f 552 (629)
.|||+|||.|.|..++.+.. ..++..+|-.+..+..+..+ |+ +.+++ |+-+....++ ..||+|=++--|
T Consensus 3 ~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 3 RVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp EEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred EEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 59999999999999998775 34566666553344433321 11 23333 2222222344 889999888777
Q ss_pred cccC-----CCcCHHHHHHHHhhcccCCcEEEEE
Q 006834 553 SIYQ-----DRCDITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 553 s~~~-----~~c~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
.... .+-....++.++.|+|||||.+++-
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI 114 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 6431 1123467899999999999999874
No 329
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=96.82 E-value=0.0079 Score=65.79 Aligned_cols=95 Identities=8% Similarity=0.052 Sum_probs=72.4
Q ss_pred CeEEEeCCCCchHHHHHHHc--CCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCCCC-CCCCCeeEEEecCc
Q 006834 224 RTAVDTGCGVASWGAYLLKR--DILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKRLP-YPARAFDMAHCSGC 295 (629)
Q Consensus 224 ~~VLDIGCGtG~~a~~La~~--g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~Lp-~pd~sFDlV~~s~~ 295 (629)
.+|||+.||+|..+..++.+ ++. .++++|+++.+++.++++ +. ++.+...|+..+- ...+.||+|..-.
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~--~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP- 122 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVR--EVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP- 122 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-
Confidence 37999999999999999987 443 567789999999999865 22 3566666665442 2235799998643
Q ss_pred ccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 296 LIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 296 L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
+ . .+..++..+.+.+++||++.++..
T Consensus 123 f---G-s~~~fld~al~~~~~~glL~vTaT 148 (374)
T TIGR00308 123 F---G-TPAPFVDSAIQASAERGLLLVTAT 148 (374)
T ss_pred C---C-CcHHHHHHHHHhcccCCEEEEEec
Confidence 2 2 456899999999999999999853
No 330
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=96.81 E-value=0.0097 Score=63.89 Aligned_cols=92 Identities=17% Similarity=0.114 Sum_probs=64.1
Q ss_pred CCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCCCeeEEEecCccccccc
Q 006834 222 NIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCSGCLIPWYM 301 (629)
Q Consensus 222 ~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~ 301 (629)
.+.++||+||++|.|+..|+++|..+ +++|..+ +-.. ......+.....+..+..-+.+.+|+++|-.+-
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~rG~~V---~AVD~g~-l~~~-L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve----- 280 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRRGMFV---TAVDNGP-MAQS-LMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVE----- 280 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCCEE---EEEechh-cCHh-hhCCCCEEEEeccCcccCCCCCCCCEEEEeccc-----
Confidence 35599999999999999999998754 5559554 2222 223445777776665553236789999995543
Q ss_pred CHHHHHHHHHhcccCC--cEEEEE
Q 006834 302 YDGLYLLEVDRVLRPG--GYWILS 323 (629)
Q Consensus 302 d~~~~L~el~RvLKPG--G~liis 323 (629)
.|...+.-+.+.|..| ..+|+.
T Consensus 281 ~P~rva~lm~~Wl~~g~cr~aIfn 304 (357)
T PRK11760 281 KPARVAELMAQWLVNGWCREAIFN 304 (357)
T ss_pred CHHHHHHHHHHHHhcCcccEEEEE
Confidence 6778888888888766 345554
No 331
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=96.81 E-value=0.0026 Score=67.30 Aligned_cols=58 Identities=16% Similarity=0.136 Sum_probs=44.8
Q ss_pred HHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC
Q 006834 208 YIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG 267 (629)
Q Consensus 208 ~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg 267 (629)
+.+.+.+.+...++. .+||.+||.|.++..+++.......++++|.++++++.|+++-
T Consensus 7 ll~Evl~~L~~~pg~--~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L 64 (296)
T PRK00050 7 LLDEVVDALAIKPDG--IYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRL 64 (296)
T ss_pred cHHHHHHhhCCCCCC--EEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhh
Confidence 355666666555444 8999999999999999998532235677799999999998763
No 332
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.80 E-value=0.00016 Score=68.74 Aligned_cols=62 Identities=19% Similarity=0.198 Sum_probs=50.6
Q ss_pred CeEEEEecCCCCCCCCCCeeEEEecCcccccccC-HHHHHHHHHhcccCCcEEEEEeCCCCcc
Q 006834 269 PAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMY-DGLYLLEVDRVLRPGGYWILSGPPIHWK 330 (629)
Q Consensus 269 ~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d-~~~~L~el~RvLKPGG~liis~P~~~w~ 330 (629)
.+.++.-.....+|.++|.|+|.|.++++|+..+ ...++++++|+|||||+|-+++|..++.
T Consensus 30 ~vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~ 92 (185)
T COG4627 30 EVDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKFL 92 (185)
T ss_pred ccchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchh
Confidence 3444444456678999999999999999999855 3469999999999999999999977643
No 333
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=96.79 E-value=0.018 Score=59.75 Aligned_cols=109 Identities=16% Similarity=0.131 Sum_probs=79.6
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc------CCCeEEEEecCCCCCC
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER------GVPAMIGVISSKRLPY 282 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er------g~~~~~~v~d~~~Lp~ 282 (629)
+..|..+|...+|. +|||-|.|+|+++.++++.-...-.+...|+++.-.+.|++. +.++.+.+-|.....|
T Consensus 94 ia~I~~~L~i~PGs--vV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF 171 (314)
T KOG2915|consen 94 IAMILSMLEIRPGS--VVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGF 171 (314)
T ss_pred HHHHHHHhcCCCCC--EEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCc
Confidence 66788888888887 999999999999999988632222445559999988888864 3467888888776655
Q ss_pred C--CCCeeEEEecCcccccccCHHHHHHHHHhcccCCc-EEEEEeC
Q 006834 283 P--ARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGG-YWILSGP 325 (629)
Q Consensus 283 p--d~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG-~liis~P 325 (629)
. +..+|.|+. .++ .|-.++--+..+||-+| +|+-..|
T Consensus 172 ~~ks~~aDaVFL-----DlP-aPw~AiPha~~~lk~~g~r~csFSP 211 (314)
T KOG2915|consen 172 LIKSLKADAVFL-----DLP-APWEAIPHAAKILKDEGGRLCSFSP 211 (314)
T ss_pred cccccccceEEE-----cCC-ChhhhhhhhHHHhhhcCceEEeccH
Confidence 4 678999985 233 45556777777999877 5544433
No 334
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=96.79 E-value=0.0023 Score=71.05 Aligned_cols=99 Identities=24% Similarity=0.330 Sum_probs=58.0
Q ss_pred eEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhh----cccceecccc-ccC--CC--CCcccceeecc-
Q 006834 481 RNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYER----GLIGTYQDWC-EAF--ST--YPRTYDLIHAS- 549 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~er----gli~~~~~~~-e~f--~~--yp~t~Dl~H~~- 549 (629)
.+|||||||.||++.+|++. + --.|+.+|.+...+..+.++ |+--.+.--+ ..+ .. -+.+||.|-++
T Consensus 240 ~~VLDlcag~G~kt~~la~~~~--~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDa 317 (426)
T TIGR00563 240 ETILDACAAPGGKTTHILELAP--QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLDA 317 (426)
T ss_pred CeEEEeCCCccHHHHHHHHHcC--CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEcC
Confidence 46999999999999988764 2 11344445555566554333 5410110011 121 11 13789998864
Q ss_pred -----ccccccCC------CcC-------HHHHHHHHhhcccCCcEEEEE
Q 006834 550 -----GVFSIYQD------RCD-------ITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 550 -----~~fs~~~~------~c~-------~~~~l~e~dRiLrPgG~~i~~ 581 (629)
|++..... .-+ ...+|.++-|+|||||.++++
T Consensus 318 PcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvys 367 (426)
T TIGR00563 318 PCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYA 367 (426)
T ss_pred CCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 33331110 000 235899999999999999997
No 335
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=96.78 E-value=0.0045 Score=63.55 Aligned_cols=103 Identities=14% Similarity=0.255 Sum_probs=70.0
Q ss_pred EEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcccceeccccccCCCCC---cccceee-ccccccccCC
Q 006834 482 NVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAFSTYP---RTYDLIH-ASGVFSIYQD 557 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergli~~~~~~~e~f~~yp---~t~Dl~H-~~~~fs~~~~ 557 (629)
.|-|||||-+-.|. =...+|..|-+++++.. +. -| .+...| +|.|++- |-.|.
T Consensus 183 vIaD~GCGEakiA~-~~~~kV~SfDL~a~~~~--------------V~--~c-Dm~~vPl~d~svDvaV~CLSLM----- 239 (325)
T KOG3045|consen 183 VIADFGCGEAKIAS-SERHKVHSFDLVAVNER--------------VI--AC-DMRNVPLEDESVDVAVFCLSLM----- 239 (325)
T ss_pred EEEecccchhhhhh-ccccceeeeeeecCCCc--------------ee--ec-cccCCcCccCcccEEEeeHhhh-----
Confidence 58999999886654 23448999999998765 11 12 122244 8999854 32222
Q ss_pred CcCHHHHHHHHhhcccCCcEEEEEeCHH---HHHHHHHHHhcCCCeEEEeecC
Q 006834 558 RCDITNILLEMDRILRPEGTVIFRDTVE---MLVKIRSITEGMRWKSQIMDHE 607 (629)
Q Consensus 558 ~c~~~~~l~e~dRiLrPgG~~i~~d~~~---~~~~~~~~~~~l~w~~~~~~~e 607 (629)
.-++-+++.|..|||+|||.++|.+-.. .+....+-+..|..++...|.+
T Consensus 240 gtn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d~~ 292 (325)
T KOG3045|consen 240 GTNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKDVS 292 (325)
T ss_pred cccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehhhh
Confidence 2468899999999999999999975443 2334555577888887765554
No 336
>PRK00811 spermidine synthase; Provisional
Probab=96.76 E-value=0.0078 Score=63.33 Aligned_cols=101 Identities=12% Similarity=0.094 Sum_probs=60.9
Q ss_pred CCeeEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhh------cc-----cceec-cccccCCCCCcccc
Q 006834 478 GRYRNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYER------GL-----IGTYQ-DWCEAFSTYPRTYD 544 (629)
Q Consensus 478 ~~~R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~er------gl-----i~~~~-~~~e~f~~yp~t~D 544 (629)
..-++|||+|||.|+.++.+.++ ++- +|+-++..+..+.++.+. |+ +.+++ |--+-+..-+.+||
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~--~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yD 152 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVE--KITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFD 152 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCC--EEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCccc
Confidence 44678999999999999999887 553 444444444577776553 11 11222 11111122347899
Q ss_pred eeeccccccccCC--CcCHHHHHHHHhhcccCCcEEEEE
Q 006834 545 LIHASGVFSIYQD--RCDITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 545 l~H~~~~fs~~~~--~c~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
+|=++. +.-+.. .---+.++.++-|+|+|||.+++.
T Consensus 153 vIi~D~-~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 153 VIIVDS-TDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EEEECC-CCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 986642 211110 001256778899999999999985
No 337
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=96.75 E-value=0.0091 Score=62.28 Aligned_cols=103 Identities=12% Similarity=0.105 Sum_probs=61.1
Q ss_pred CCCeeEEEeecccchhHHhhhhCCC-eEEEEecCCCCCCCchHHHHhh-----c-c----cceec-cccccCCCCCcccc
Q 006834 477 KGRYRNVMDMNAYLGGFAAAMSKYP-VWVMNVVPFHSNPDTLGAIYER-----G-L----IGTYQ-DWCEAFSTYPRTYD 544 (629)
Q Consensus 477 ~~~~R~vlD~~~g~Ggfaa~l~~~~-v~~mnv~~~~~~~~~l~~~~er-----g-l----i~~~~-~~~e~f~~yp~t~D 544 (629)
..+-++||++|||.|+++..+.+.+ + .+++-++..++.+..+.+. | + +.+.+ |--+-....+++||
T Consensus 70 ~~~p~~VL~iG~G~G~~~~~ll~~~~~--~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yD 147 (270)
T TIGR00417 70 HPNPKHVLVIGGGDGGVLREVLKHKSV--EKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFD 147 (270)
T ss_pred CCCCCEEEEEcCCchHHHHHHHhCCCc--ceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCcc
Confidence 3345589999999999999888764 3 3444444444566655542 1 0 11111 11111122368999
Q ss_pred eeeccccccccCC-CcCHHHHHHHHhhcccCCcEEEEE
Q 006834 545 LIHASGVFSIYQD-RCDITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 545 l~H~~~~fs~~~~-~c~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
+|=++........ .--...++..+-|+|+|||.+++.
T Consensus 148 vIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 148 VIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 9866543221111 111356788899999999999985
No 338
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.63 E-value=0.012 Score=65.58 Aligned_cols=110 Identities=20% Similarity=0.195 Sum_probs=75.5
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C-CCeEEEEecCCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G-VPAMIGVISSKRL 280 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g-~~~~~~v~d~~~L 280 (629)
..+++...+.+...++. ++||+=||.|.|+..|+++... +.|+|+++++++.|+++ + .++.|..++++++
T Consensus 279 ekl~~~a~~~~~~~~~~--~vlDlYCGvG~f~l~lA~~~~~---V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~ 353 (432)
T COG2265 279 EKLYETALEWLELAGGE--RVLDLYCGVGTFGLPLAKRVKK---VHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEF 353 (432)
T ss_pred HHHHHHHHHHHhhcCCC--EEEEeccCCChhhhhhcccCCE---EEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHH
Confidence 33344555555554444 8999999999999999987654 45669999999999864 3 3588888887776
Q ss_pred CCC---CCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 281 PYP---ARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 281 p~p---d~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
... ...||.|+...---.. ...+++.+.+ ++|-..++++-
T Consensus 354 ~~~~~~~~~~d~VvvDPPR~G~---~~~~lk~l~~-~~p~~IvYVSC 396 (432)
T COG2265 354 TPAWWEGYKPDVVVVDPPRAGA---DREVLKQLAK-LKPKRIVYVSC 396 (432)
T ss_pred hhhccccCCCCEEEECCCCCCC---CHHHHHHHHh-cCCCcEEEEeC
Confidence 522 3588999964422111 2345555554 57788888884
No 339
>PRK01581 speE spermidine synthase; Validated
Probab=96.59 E-value=0.014 Score=63.41 Aligned_cols=146 Identities=13% Similarity=0.074 Sum_probs=79.1
Q ss_pred CCCeeEEEeecccchhHHhhhhCCC-eEEEEecCCCCCCCchHHHHhh--------c-c----cceec-cccccCCCCCc
Q 006834 477 KGRYRNVMDMNAYLGGFAAAMSKYP-VWVMNVVPFHSNPDTLGAIYER--------G-L----IGTYQ-DWCEAFSTYPR 541 (629)
Q Consensus 477 ~~~~R~vlD~~~g~Ggfaa~l~~~~-v~~mnv~~~~~~~~~l~~~~er--------g-l----i~~~~-~~~e~f~~yp~ 541 (629)
-..-++||++|+|.|+.++.+.+.+ + .+|+-+|..+..++++.+. | + +-+.+ |--+-+..-++
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v--~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~ 225 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETV--LHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSS 225 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCC--CeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCC
Confidence 3445789999999999999888764 4 3444455555688887751 1 1 11111 11111222346
Q ss_pred ccceeecccccccc--CCCcCHHHHHHHHhhcccCCcEEEEEeCH-----HHHHHHHHHHhcCCCeEEEeecCCCCC-CC
Q 006834 542 TYDLIHASGVFSIY--QDRCDITNILLEMDRILRPEGTVIFRDTV-----EMLVKIRSITEGMRWKSQIMDHESGPF-NP 613 (629)
Q Consensus 542 t~Dl~H~~~~fs~~--~~~c~~~~~l~e~dRiLrPgG~~i~~d~~-----~~~~~~~~~~~~l~w~~~~~~~e~~~~-~~ 613 (629)
.||+|=++--.... ..+---..++..+.|.|+|||.++..... .....+.+.++..-..+..+.+---.. ..
T Consensus 226 ~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y~t~vPsyg~~ 305 (374)
T PRK01581 226 LYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSYHTIVPSFGTD 305 (374)
T ss_pred CccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEEEEecCCCCCc
Confidence 89998876211111 11111245888999999999999886431 222223344343333333222211111 12
Q ss_pred ceEEEEEeccc
Q 006834 614 EKILFAAKTYW 624 (629)
Q Consensus 614 e~~l~~~K~~w 624 (629)
-.+++|.|...
T Consensus 306 WgF~~as~~~~ 316 (374)
T PRK01581 306 WGFHIAANSAY 316 (374)
T ss_pred eEEEEEeCCcc
Confidence 56777776544
No 340
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=96.57 E-value=0.013 Score=60.78 Aligned_cols=103 Identities=15% Similarity=0.054 Sum_probs=74.9
Q ss_pred hHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc---CCCeEEEEecCCCCC
Q 006834 205 ADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER---GVPAMIGVISSKRLP 281 (629)
Q Consensus 205 a~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er---g~~~~~~v~d~~~Lp 281 (629)
....++.|.+.+....+. .|||+|+|.|.++..|++.+. .++.+|.++.+++..+++ ..++.+...|...+.
T Consensus 15 ~~~~~~~Iv~~~~~~~~~--~VlEiGpG~G~lT~~L~~~~~---~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~ 89 (262)
T PF00398_consen 15 DPNIADKIVDALDLSEGD--TVLEIGPGPGALTRELLKRGK---RVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWD 89 (262)
T ss_dssp HHHHHHHHHHHHTCGTTS--EEEEESSTTSCCHHHHHHHSS---EEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSC
T ss_pred CHHHHHHHHHhcCCCCCC--EEEEeCCCCccchhhHhcccC---cceeecCcHhHHHHHHHHhhhcccceeeecchhccc
Confidence 466788888888765444 899999999999999999984 455669999999999885 357888999988887
Q ss_pred CCC---CCeeEEEecCcccccccCHHHHHHHHHhcccC
Q 006834 282 YPA---RAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRP 316 (629)
Q Consensus 282 ~pd---~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKP 316 (629)
.+. +....|+++..+ + -...++..+...-+.
T Consensus 90 ~~~~~~~~~~~vv~NlPy-~---is~~il~~ll~~~~~ 123 (262)
T PF00398_consen 90 LYDLLKNQPLLVVGNLPY-N---ISSPILRKLLELYRF 123 (262)
T ss_dssp GGGHCSSSEEEEEEEETG-T---GHHHHHHHHHHHGGG
T ss_pred cHHhhcCCceEEEEEecc-c---chHHHHHHHhhcccc
Confidence 554 456677776533 2 234566666653333
No 341
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=96.56 E-value=0.0058 Score=63.55 Aligned_cols=101 Identities=17% Similarity=0.183 Sum_probs=60.0
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCC----CeEEEEecCCCCCCCchHHHHhh----cc--cceeccccccCCCCCcccc
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKY----PVWVMNVVPFHSNPDTLGAIYER----GL--IGTYQDWCEAFSTYPRTYD 544 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~----~v~~mnv~~~~~~~~~l~~~~er----gl--i~~~~~~~e~f~~yp~t~D 544 (629)
+.++. +||||+||.|+++.+|++. + .|+.+|.+...+..+.++ |+ +-+++.=...+......||
T Consensus 69 ~~~g~--~VLDl~ag~G~kt~~la~~~~~~g----~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD 142 (264)
T TIGR00446 69 PDPPE--RVLDMAAAPGGKTTQISALMKNEG----AIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFD 142 (264)
T ss_pred CCCcC--EEEEECCCchHHHHHHHHHcCCCC----EEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCC
Confidence 34554 4999999999999887653 2 245556665666555432 44 2333311112222225699
Q ss_pred eeeccccccccC------------CCcC-------HHHHHHHHhhcccCCcEEEEE
Q 006834 545 LIHASGVFSIYQ------------DRCD-------ITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 545 l~H~~~~fs~~~------------~~c~-------~~~~l~e~dRiLrPgG~~i~~ 581 (629)
.|-++-=.|... ..-+ ...+|.++-++|||||+++++
T Consensus 143 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYs 198 (264)
T TIGR00446 143 AILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYS 198 (264)
T ss_pred EEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 987644333210 0001 124888999999999999996
No 342
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=96.55 E-value=0.0061 Score=61.24 Aligned_cols=109 Identities=17% Similarity=0.058 Sum_probs=58.2
Q ss_pred HHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHH-cCCcEeEEEeecCcHHHHHHHHHc-----------C---CCeEE
Q 006834 208 YIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLK-RDILTMSFARRDTHEAQVQFALER-----------G---VPAMI 272 (629)
Q Consensus 208 ~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~-~g~~~v~i~gvDiS~~~i~~A~er-----------g---~~~~~ 272 (629)
....+.+.+...+++ ..+|+|||.|......+- .++. ...|+++.+...+.|.+. + .++.+
T Consensus 30 ~~~~il~~~~l~~~d--vF~DlGSG~G~~v~~aal~~~~~--~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l 105 (205)
T PF08123_consen 30 FVSKILDELNLTPDD--VFYDLGSGVGNVVFQAALQTGCK--KSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVEL 105 (205)
T ss_dssp HHHHHHHHTT--TT---EEEEES-TTSHHHHHHHHHH--S--EEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEE
T ss_pred HHHHHHHHhCCCCCC--EEEECCCCCCHHHHHHHHHcCCc--EEEEEEechHHHHHHHHHHHHHHHHHHHhhccccccee
Confidence 344555666655544 899999999988766553 3443 245669998887776531 2 23445
Q ss_pred EEecCCCCCCCC---CCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEE
Q 006834 273 GVISSKRLPYPA---RAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWIL 322 (629)
Q Consensus 273 ~v~d~~~Lp~pd---~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~lii 322 (629)
..+|....++.. ..-|+|+++... +.++....|.++..-||+|-+++-
T Consensus 106 ~~gdfl~~~~~~~~~s~AdvVf~Nn~~--F~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 106 IHGDFLDPDFVKDIWSDADVVFVNNTC--FDPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp ECS-TTTHHHHHHHGHC-SEEEE--TT--T-HHHHHHHHHHHTTS-TT-EEEE
T ss_pred eccCccccHhHhhhhcCCCEEEEeccc--cCHHHHHHHHHHHhcCCCCCEEEE
Confidence 555543322111 346999997654 232344567778888988877654
No 343
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=96.52 E-value=0.0048 Score=68.57 Aligned_cols=119 Identities=21% Similarity=0.250 Sum_probs=67.4
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc-cceec-cccccCCCCC-cccceee
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL-IGTYQ-DWCEAFSTYP-RTYDLIH 547 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl-i~~~~-~~~e~f~~yp-~t~Dl~H 547 (629)
+.++. .|||+|||.|+.+.+|++..- -..|+..|.++.++..+.++ |+ +.+.+ |..+....++ .+||.|=
T Consensus 242 ~~~g~--~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl 318 (427)
T PRK10901 242 PQNGE--RVLDACAAPGGKTAHILELAP-QAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRIL 318 (427)
T ss_pred CCCCC--EEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEE
Confidence 34443 599999999999999876520 02355556665666655433 33 22222 3222111133 6899987
Q ss_pred ccccccccC------------CC-------cCHHHHHHHHhhcccCCcEEEEEe----CHHHHHHHHHHHhc
Q 006834 548 ASGVFSIYQ------------DR-------CDITNILLEMDRILRPEGTVIFRD----TVEMLVKIRSITEG 596 (629)
Q Consensus 548 ~~~~fs~~~------------~~-------c~~~~~l~e~dRiLrPgG~~i~~d----~~~~~~~~~~~~~~ 596 (629)
++.=+|... .. .....+|.++-++|||||.++++. ..+....++..+++
T Consensus 319 ~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~ 390 (427)
T PRK10901 319 LDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLAR 390 (427)
T ss_pred ECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHh
Confidence 544333110 00 112358889999999999999863 23333444444443
No 344
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=96.51 E-value=0.0053 Score=68.56 Aligned_cols=114 Identities=24% Similarity=0.298 Sum_probs=65.1
Q ss_pred eEEEeecccchhHHhhhhCC--CeEEEEecCCCCCCCchHHHHh----hcc--cceec-cccccCCCCCcccceeeccc-
Q 006834 481 RNVMDMNAYLGGFAAAMSKY--PVWVMNVVPFHSNPDTLGAIYE----RGL--IGTYQ-DWCEAFSTYPRTYDLIHASG- 550 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~e----rgl--i~~~~-~~~e~f~~yp~t~Dl~H~~~- 550 (629)
.+|||||||.|+++.+|++. +- ..|+.+|.+++.+..+.+ .|+ |-+.+ |..+....++++||+|=++.
T Consensus 252 ~~VLDlgaG~G~~t~~la~~~~~~--~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~P 329 (444)
T PRK14902 252 DTVLDACAAPGGKTTHIAELLKNT--GKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVDAP 329 (444)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEcCC
Confidence 46999999999999888764 11 134445555456655543 244 33333 33222223458899976543
Q ss_pred -----ccccc------CCCcCH-------HHHHHHHhhcccCCcEEEEEe----CHHHHHHHHHHHhc
Q 006834 551 -----VFSIY------QDRCDI-------TNILLEMDRILRPEGTVIFRD----TVEMLVKIRSITEG 596 (629)
Q Consensus 551 -----~fs~~------~~~c~~-------~~~l~e~dRiLrPgG~~i~~d----~~~~~~~~~~~~~~ 596 (629)
++... ....++ ..+|.++-|+|||||.+|++- ..+....++.+++.
T Consensus 330 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~ 397 (444)
T PRK14902 330 CSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEE 397 (444)
T ss_pred CCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHh
Confidence 22210 011111 347889999999999999751 11233345555554
No 345
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=96.49 E-value=0.0049 Score=68.64 Aligned_cols=115 Identities=16% Similarity=0.205 Sum_probs=67.8
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCC---CeEEEEecCCCCCCCchHHHHhh----cc--cceec-cccccCCCC-Cccc
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKY---PVWVMNVVPFHSNPDTLGAIYER----GL--IGTYQ-DWCEAFSTY-PRTY 543 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~er----gl--i~~~~-~~~e~f~~y-p~t~ 543 (629)
+.++. +||||+||.||.+.+|++. +- .|+..|.++..+..+.++ |+ +-+.+ |.. .+..+ +.+|
T Consensus 235 ~~~g~--~VLD~cagpGgkt~~la~~~~~~g---~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~-~l~~~~~~~f 308 (431)
T PRK14903 235 LEPGL--RVLDTCAAPGGKTTAIAELMKDQG---KILAVDISREKIQLVEKHAKRLKLSSIEIKIADAE-RLTEYVQDTF 308 (431)
T ss_pred CCCCC--EEEEeCCCccHHHHHHHHHcCCCC---EEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchh-hhhhhhhccC
Confidence 44554 5999999999998887753 21 355556666777666544 44 22322 322 22222 3789
Q ss_pred ceeeccccccccCC---Cc----------------CHHHHHHHHhhcccCCcEEEEE----eCHHHHHHHHHHHh
Q 006834 544 DLIHASGVFSIYQD---RC----------------DITNILLEMDRILRPEGTVIFR----DTVEMLVKIRSITE 595 (629)
Q Consensus 544 Dl~H~~~~fs~~~~---~c----------------~~~~~l~e~dRiLrPgG~~i~~----d~~~~~~~~~~~~~ 595 (629)
|.|=++.--|.... += .-..+|.+.-+.|||||.++++ .+.+....|+.+++
T Consensus 309 D~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~ 383 (431)
T PRK14903 309 DRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVY 383 (431)
T ss_pred CEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHH
Confidence 99876433332111 00 1134788999999999999996 23333444455544
No 346
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=96.36 E-value=0.0062 Score=68.05 Aligned_cols=111 Identities=21% Similarity=0.330 Sum_probs=63.4
Q ss_pred eEEEeecccchhHHhhhhCC--CeEEEEecCCCCCCCchHHHHh----hcc--cceeccccccCCCC-C-cccceeecc-
Q 006834 481 RNVMDMNAYLGGFAAAMSKY--PVWVMNVVPFHSNPDTLGAIYE----RGL--IGTYQDWCEAFSTY-P-RTYDLIHAS- 549 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~e----rgl--i~~~~~~~e~f~~y-p-~t~Dl~H~~- 549 (629)
..|||+|||.|+++.+|++. +- -.|+.+|.+..++..+.+ .|+ |-+. +.....+ | .+||.|=++
T Consensus 252 ~~VLDlgaG~G~kt~~la~~~~~~--~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~---~~Da~~~~~~~~fD~Vl~D~ 326 (445)
T PRK14904 252 STVLDLCAAPGGKSTFMAELMQNR--GQITAVDRYPQKLEKIRSHASALGITIIETI---EGDARSFSPEEQPDAILLDA 326 (445)
T ss_pred CEEEEECCCCCHHHHHHHHHhCCC--cEEEEEECCHHHHHHHHHHHHHhCCCeEEEE---eCcccccccCCCCCEEEEcC
Confidence 35999999999988777642 11 134555666566655543 354 2222 2222222 3 689987643
Q ss_pred -----cccccc-----C-CCcCH-------HHHHHHHhhcccCCcEEEEEe----CHHHHHHHHHHHhc
Q 006834 550 -----GVFSIY-----Q-DRCDI-------TNILLEMDRILRPEGTVIFRD----TVEMLVKIRSITEG 596 (629)
Q Consensus 550 -----~~fs~~-----~-~~c~~-------~~~l~e~dRiLrPgG~~i~~d----~~~~~~~~~~~~~~ 596 (629)
|+|... . ...++ ..+|.++-|+|||||.+++.. +.+.-..|+.++++
T Consensus 327 Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~ 395 (445)
T PRK14904 327 PCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQR 395 (445)
T ss_pred CCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHh
Confidence 233211 0 01111 248999999999999999973 22333445555543
No 347
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=96.35 E-value=0.044 Score=59.60 Aligned_cols=114 Identities=17% Similarity=0.165 Sum_probs=77.2
Q ss_pred HHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCc-EeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCCCC--CC
Q 006834 212 INELIPLTGGNIRTAVDTGCGVASWGAYLLKRDIL-TMSFARRDTHEAQVQFALER----GV-PAMIGVISSKRLP--YP 283 (629)
Q Consensus 212 I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~-~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~Lp--~p 283 (629)
....+...++. +|||+.++.|.=+..|++.... ...++++|.++.-++..+++ |. ++.....|...++ .+
T Consensus 148 ~a~~L~p~pge--~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~ 225 (355)
T COG0144 148 PALVLDPKPGE--RVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLP 225 (355)
T ss_pred HHHHcCCCCcC--EEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccccccccccc
Confidence 34455555665 9999999999989999887543 22347779999888777654 43 3466666766554 22
Q ss_pred C-CCeeEEEe------cCcccccccC----------------HHHHHHHHHhcccCCcEEEEEeCCCC
Q 006834 284 A-RAFDMAHC------SGCLIPWYMY----------------DGLYLLEVDRVLRPGGYWILSGPPIH 328 (629)
Q Consensus 284 d-~sFDlV~~------s~~L~h~~~d----------------~~~~L~el~RvLKPGG~liis~P~~~ 328 (629)
. +.||.|+. ..++ +-.++ +..+|....++|||||.|+.++-...
T Consensus 226 ~~~~fD~iLlDaPCSg~G~i-rr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~ 292 (355)
T COG0144 226 GGEKFDRILLDAPCSGTGVI-RRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLT 292 (355)
T ss_pred ccCcCcEEEECCCCCCCccc-ccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCc
Confidence 2 35999995 2222 11111 12589999999999999999975443
No 348
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=96.33 E-value=0.028 Score=59.29 Aligned_cols=155 Identities=16% Similarity=0.203 Sum_probs=95.2
Q ss_pred HHHHHHHHhhcCccC--CCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHH---HHH----HcCC--------
Q 006834 206 DAYIDNINELIPLTG--GNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQ---FAL----ERGV-------- 268 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~--g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~---~A~----erg~-------- 268 (629)
...++.|..+.+... ....+||--|||.|+++..|+..|... -|-+.|.-|+= ++. ..+.
T Consensus 132 kpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~~---qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh 208 (369)
T KOG2798|consen 132 KPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFKC---QGNEFSYFMLICSSFILNYCKQENQFTIYPFIH 208 (369)
T ss_pred hhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcccc---cccHHHHHHHHHHHHHHHhhccCCcEEEEeeee
Confidence 456788888776532 234479999999999999999998743 34467666542 222 1110
Q ss_pred -------------CeE---------------E--EEecCCCC---CCCCCCeeEEEecCcccccccCHHHHHHHHHhccc
Q 006834 269 -------------PAM---------------I--GVISSKRL---PYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLR 315 (629)
Q Consensus 269 -------------~~~---------------~--~v~d~~~L---p~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLK 315 (629)
++. | ..+|..+. +-..++||+|+..+.+ .-..+.-.+|..+..+||
T Consensus 209 ~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFI-DTa~NileYi~tI~~iLk 287 (369)
T KOG2798|consen 209 QYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFI-DTAHNILEYIDTIYKILK 287 (369)
T ss_pred ccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEe-echHHHHHHHHHHHHhcc
Confidence 000 0 00111110 1112469999976544 444456789999999999
Q ss_pred CCcEEEEEeCCCCccccccCccCcchhhhhHHHHHHHHHHHhcceeeccc
Q 006834 316 PGGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIEDIAKRLCWKKLIEK 365 (629)
Q Consensus 316 PGG~liis~P~~~w~~~~~~w~~~~e~l~~~~~~ie~l~~~l~w~~v~~~ 365 (629)
|||+++=.+|-...-....+- .....++...+.+..+++.++|+.+.+.
T Consensus 288 ~GGvWiNlGPLlYHF~d~~g~-~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 288 PGGVWINLGPLLYHFEDTHGV-ENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred CCcEEEeccceeeeccCCCCC-cccccccccHHHHHHHHHhcCcEEEEee
Confidence 999999998855432222211 1222344456678888999999887665
No 349
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=96.33 E-value=0.017 Score=50.44 Aligned_cols=95 Identities=20% Similarity=0.317 Sum_probs=56.8
Q ss_pred EEeecccchh--HHhhhhCCCeEEEEecCCCCCCCchHHHHhhcc------cceec-cccccCCCCC--cccceeecccc
Q 006834 483 VMDMNAYLGG--FAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGL------IGTYQ-DWCEAFSTYP--RTYDLIHASGV 551 (629)
Q Consensus 483 vlD~~~g~Gg--faa~l~~~~v~~mnv~~~~~~~~~l~~~~ergl------i~~~~-~~~e~f~~yp--~t~Dl~H~~~~ 551 (629)
++|+|||.|. +.+.+...+..+.. ++....++.....+.. +..+. +.......++ .+||++ +...
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~ 127 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVG---VDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLL 127 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEE---EeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeee
Confidence 9999999998 55555554433333 4444345555333321 12222 2222223333 389998 6333
Q ss_pred ccccCCCcCHHHHHHHHhhcccCCcEEEEEeCH
Q 006834 552 FSIYQDRCDITNILLEMDRILRPEGTVIFRDTV 584 (629)
Q Consensus 552 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~ 584 (629)
...+.. ...++.++.|+|+|+|.+++.+..
T Consensus 128 ~~~~~~---~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 128 VLHLLP---PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred ehhcCC---HHHHHHHHHHhcCCCcEEEEEecc
Confidence 332222 688999999999999999998654
No 350
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=96.32 E-value=0.039 Score=60.11 Aligned_cols=118 Identities=11% Similarity=0.042 Sum_probs=81.6
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEe-------------------------------------
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTM------------------------------------- 248 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v------------------------------------- 248 (629)
..+...|..+..-.++ ..++|--||+|++..+.+..+....
T Consensus 177 etLAaAil~lagw~~~--~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~ 254 (381)
T COG0116 177 ETLAAAILLLAGWKPD--EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKEL 254 (381)
T ss_pred HHHHHHHHHHcCCCCC--CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCcc
Confidence 3334445544444444 3799999999999998887653110
Q ss_pred -EEEeecCcHHHHHHHHHc----CC--CeEEEEecCCCCCCCCCCeeEEEecCcccccccCH---H----HHHHHHHhcc
Q 006834 249 -SFARRDTHEAQVQFALER----GV--PAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMYD---G----LYLLEVDRVL 314 (629)
Q Consensus 249 -~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d~---~----~~L~el~RvL 314 (629)
-++|.|+++.+++.|+.+ |+ .+.|.++|...++-+-+.+|+|+|+.-.---..+. . .+...+.+.+
T Consensus 255 ~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~ 334 (381)
T COG0116 255 PIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLL 334 (381)
T ss_pred ceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHh
Confidence 266889999999999865 43 48899999988875447999999987441111111 1 3556777888
Q ss_pred cCCcEEEEEeC
Q 006834 315 RPGGYWILSGP 325 (629)
Q Consensus 315 KPGG~liis~P 325 (629)
+--+.++++++
T Consensus 335 ~~ws~~v~tt~ 345 (381)
T COG0116 335 AGWSRYVFTTS 345 (381)
T ss_pred cCCceEEEEcc
Confidence 88888888854
No 351
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=96.29 E-value=0.0034 Score=64.03 Aligned_cols=106 Identities=21% Similarity=0.328 Sum_probs=65.0
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhc-------c--cceeccccccCCCCCcccceeecccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERG-------L--IGTYQDWCEAFSTYPRTYDLIHASGV 551 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~erg-------l--i~~~~~~~e~f~~yp~t~Dl~H~~~~ 551 (629)
.+|||+|||+|+|...|++.++ -.|..+|...+++.--+.+. . |. +-+|-+-...++ ++|+.=
T Consensus 77 ~~vlDiG~gtG~~t~~l~~~ga--~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~-~~~~~~~~~d~~-~~Dvsf---- 148 (228)
T TIGR00478 77 KIVLDVGSSTGGFTDCALQKGA--KEVYGVDVGYNQLAEKLRQDERVKVLERTNIR-YVTPADIFPDFA-TFDVSF---- 148 (228)
T ss_pred CEEEEcccCCCHHHHHHHHcCC--CEEEEEeCCHHHHHHHHhcCCCeeEeecCCcc-cCCHhHcCCCce-eeeEEE----
Confidence 4699999999999999998864 34556666645665422221 1 11 113333221121 445432
Q ss_pred ccccCCCcCHHHHHHHHhhcccCCcEEEEE-------------------eCH---HHHHHHHHHHhcCCCeEE
Q 006834 552 FSIYQDRCDITNILLEMDRILRPEGTVIFR-------------------DTV---EMLVKIRSITEGMRWKSQ 602 (629)
Q Consensus 552 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~-------------------d~~---~~~~~~~~~~~~l~w~~~ 602 (629)
+.+..+|-.|.+.|+| |.+|+- |.. .++.++...+..+.|.+.
T Consensus 149 -------iS~~~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (228)
T TIGR00478 149 -------ISLISILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEK 213 (228)
T ss_pred -------eehHhHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEe
Confidence 2345688999999999 887762 322 346666666777888765
No 352
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=96.28 E-value=0.003 Score=65.09 Aligned_cols=98 Identities=14% Similarity=0.202 Sum_probs=68.5
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcc-----cc----eeccccccCCCCCcccceeecccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGL-----IG----TYQDWCEAFSTYPRTYDLIHASGV 551 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergl-----i~----~~~~~~e~f~~yp~t~Dl~H~~~~ 551 (629)
++|||+|||.|-....|+..+ -+|+.+|....++.++-+.-= .+ .+---|+.....-..||.|-|.-+
T Consensus 91 ~~ilDvGCGgGLLSepLArlg---a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsev 167 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLG---AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEV 167 (282)
T ss_pred ceEEEeccCccccchhhHhhC---CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHH
Confidence 569999999999999999887 478888988888888887621 11 010111222222233998777444
Q ss_pred ccccCCCcCHHHHHHHHhhcccCCcEEEEEeCH
Q 006834 552 FSIYQDRCDITNILLEMDRILRPEGTVIFRDTV 584 (629)
Q Consensus 552 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~ 584 (629)
.. +--+.+.++.-+=+.|+|||.++|++-.
T Consensus 168 le---HV~dp~~~l~~l~~~lkP~G~lfittin 197 (282)
T KOG1270|consen 168 LE---HVKDPQEFLNCLSALLKPNGRLFITTIN 197 (282)
T ss_pred HH---HHhCHHHHHHHHHHHhCCCCceEeeehh
Confidence 33 3345688999999999999999998643
No 353
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=96.28 E-value=0.043 Score=55.56 Aligned_cols=95 Identities=15% Similarity=0.120 Sum_probs=66.0
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHH----cCCC-eEEEEecCCCCCCCCCCeeEEEecCccc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALE----RGVP-AMIGVISSKRLPYPARAFDMAHCSGCLI 297 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~e----rg~~-~~~~v~d~~~Lp~pd~sFDlV~~s~~L~ 297 (629)
..+++|||+|.|.-+.-|+=..+.. .++-+|....-+.+.++ -+.+ +.+....++.+.-....||+|++-.+-
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~-~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva- 145 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDL-KVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVA- 145 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCC-cEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehcc-
Confidence 4599999999999888887443332 46777888766666553 3544 888887777665321119999985433
Q ss_pred ccccCHHHHHHHHHhcccCCcEEEEE
Q 006834 298 PWYMYDGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 298 h~~~d~~~~L~el~RvLKPGG~liis 323 (629)
....++.-+...||+||.+++.
T Consensus 146 ----~L~~l~e~~~pllk~~g~~~~~ 167 (215)
T COG0357 146 ----SLNVLLELCLPLLKVGGGFLAY 167 (215)
T ss_pred ----chHHHHHHHHHhcccCCcchhh
Confidence 4456777788899999987653
No 354
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=96.27 E-value=0.0091 Score=60.92 Aligned_cols=113 Identities=22% Similarity=0.226 Sum_probs=75.1
Q ss_pred eEEEeecccchhHHhhhhCC----CeEEEEecCCCCCCCchHHHHhhcc--cceec-cccccCCCCC--cccceeecccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKY----PVWVMNVVPFHSNPDTLGAIYERGL--IGTYQ-DWCEAFSTYP--RTYDLIHASGV 551 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~----~v~~mnv~~~~~~~~~l~~~~ergl--i~~~~-~~~e~f~~yp--~t~Dl~H~~~~ 551 (629)
..+|++|||.|.|=.+|+.+ +++-+=+-..--. .-+..+-+.|| +.++. |--+-+..++ .+.|-|+. .
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~-~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i--~ 126 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVA-KALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYI--N 126 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHH-HHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEE--E
Confidence 46999999999999999876 3333333332222 45667778888 55554 3234455555 49998876 4
Q ss_pred ccc-------cCCCcCHHHHHHHHhhcccCCcEEEE-EeCHHHHHH-HHHHHhc
Q 006834 552 FSI-------YQDRCDITNILLEMDRILRPEGTVIF-RDTVEMLVK-IRSITEG 596 (629)
Q Consensus 552 fs~-------~~~~c~~~~~l~e~dRiLrPgG~~i~-~d~~~~~~~-~~~~~~~ 596 (629)
|.. .+.|=--+..|.++.|+|+|||.+.+ ||..+.... ++.....
T Consensus 127 FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~~~~~~~~~ 180 (227)
T COG0220 127 FPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEWMMLEVLEH 180 (227)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHHHHHHHHhc
Confidence 651 23444446799999999999999999 566665555 5555444
No 355
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=96.24 E-value=0.0061 Score=65.37 Aligned_cols=96 Identities=21% Similarity=0.161 Sum_probs=55.4
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHh----hcccceeccccccCCC-CC--cccceee
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYE----RGLIGTYQDWCEAFST-YP--RTYDLIH 547 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----rgli~~~~~~~e~f~~-yp--~t~Dl~H 547 (629)
+.++. +|||+|||+|.+++.|++.---.-.|+.+|..+.++..+.+ .|+ ..++..++.... .+ ..||+|.
T Consensus 78 i~~g~--~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~~~~~~~~~~fD~Ii 154 (322)
T PRK13943 78 LDKGM--RVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDGYYGVPEFAPYDVIF 154 (322)
T ss_pred CCCCC--EEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCChhhcccccCCccEEE
Confidence 44443 59999999999999987631000013334444456655544 354 111212222221 11 5799988
Q ss_pred ccccccccCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 548 ASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 548 ~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
+. ...+.+...+-|.|+|||.+++-.
T Consensus 155 ~~---------~g~~~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 155 VT---------VGVDEVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred EC---------CchHHhHHHHHHhcCCCCEEEEEe
Confidence 73 233445556778999999998854
No 356
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=96.22 E-value=0.028 Score=56.47 Aligned_cols=112 Identities=14% Similarity=0.122 Sum_probs=79.0
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCC----CeEEEEecCCC-C
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGV----PAMIGVISSKR-L 280 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~----~~~~~v~d~~~-L 280 (629)
..+.+.+++.+..+ +++||.||-|-|.....+.++.+.-. +-++.++..++..++.+. ++.+..+--+. +
T Consensus 88 tpiMha~A~ai~tk---ggrvLnVGFGMgIidT~iQe~~p~~H--~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl 162 (271)
T KOG1709|consen 88 TPIMHALAEAISTK---GGRVLNVGFGMGIIDTFIQEAPPDEH--WIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVL 162 (271)
T ss_pred hHHHHHHHHHHhhC---CceEEEeccchHHHHHHHhhcCCcce--EEEecCHHHHHHHHhcccccccceEEEecchHhhh
Confidence 45566666666543 45899999999999888888866432 346999999999987652 34444333222 2
Q ss_pred -CCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEE
Q 006834 281 -PYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 281 -p~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis 323 (629)
.++++.||-|+---.-+++. +...+.+.+.|+|||+|.|-+.
T Consensus 163 ~~L~d~~FDGI~yDTy~e~yE-dl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 163 NTLPDKHFDGIYYDTYSELYE-DLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred ccccccCcceeEeechhhHHH-HHHHHHHHHhhhcCCCceEEEe
Confidence 26788999999633323433 6677889999999999998665
No 357
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=96.22 E-value=0.011 Score=65.94 Aligned_cols=118 Identities=17% Similarity=0.244 Sum_probs=67.0
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCC--CeEEEEecCCCCCCCchHHHHhh----cccceeccccccCCCC-------Cc
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKY--PVWVMNVVPFHSNPDTLGAIYER----GLIGTYQDWCEAFSTY-------PR 541 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~er----gli~~~~~~~e~f~~y-------p~ 541 (629)
+.+|. .|||||||.||++.+|++. +- -.|+..|.+...+..+.++ |+ ..+.-.|.....+ +.
T Consensus 250 ~~~g~--~VLDl~ag~G~kt~~la~~~~~~--g~v~a~D~~~~rl~~~~~n~~r~g~-~~v~~~~~D~~~~~~~~~~~~~ 324 (434)
T PRK14901 250 PQPGE--VILDACAAPGGKTTHIAELMGDQ--GEIWAVDRSASRLKKLQENAQRLGL-KSIKILAADSRNLLELKPQWRG 324 (434)
T ss_pred CCCcC--EEEEeCCCCchhHHHHHHHhCCC--ceEEEEcCCHHHHHHHHHHHHHcCC-CeEEEEeCChhhcccccccccc
Confidence 34444 5999999999999888764 10 1244455555566555432 33 1112122222222 36
Q ss_pred ccceeecc------ccccccCC------CcC-------HHHHHHHHhhcccCCcEEEEEe----CHHHHHHHHHHHhcC
Q 006834 542 TYDLIHAS------GVFSIYQD------RCD-------ITNILLEMDRILRPEGTVIFRD----TVEMLVKIRSITEGM 597 (629)
Q Consensus 542 t~Dl~H~~------~~fs~~~~------~c~-------~~~~l~e~dRiLrPgG~~i~~d----~~~~~~~~~~~~~~l 597 (629)
+||.|=++ |++....+ ..+ ...+|.++-|+|||||.++++. +.+....|+.+++..
T Consensus 325 ~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~ 403 (434)
T PRK14901 325 YFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARH 403 (434)
T ss_pred cCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhC
Confidence 89987643 23221100 011 2468999999999999999763 234455566665553
No 358
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=96.18 E-value=0.0061 Score=58.49 Aligned_cols=72 Identities=17% Similarity=0.115 Sum_probs=48.2
Q ss_pred CCCCCCchHHHHhhcc---------cceeccccccCCCCCcccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEE
Q 006834 510 FHSNPDTLGAIYERGL---------IGTYQDWCEAFSTYPRTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIF 580 (629)
Q Consensus 510 ~~~~~~~l~~~~ergl---------i~~~~~~~e~f~~yp~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~ 580 (629)
+|-+++||.++.+|-- |..++.=++.++.-+.+||+|=+..++... .+...+|.|+.|+|||||.++|
T Consensus 3 vD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~---~d~~~~l~ei~rvLkpGG~l~i 79 (160)
T PLN02232 3 LDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNV---VDRLRAMKEMYRVLKPGSRVSI 79 (160)
T ss_pred EcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcC---CCHHHHHHHHHHHcCcCeEEEE
Confidence 4556688888765421 334443344554223799998775444433 3568899999999999999998
Q ss_pred EeCH
Q 006834 581 RDTV 584 (629)
Q Consensus 581 ~d~~ 584 (629)
.|-.
T Consensus 80 ~d~~ 83 (160)
T PLN02232 80 LDFN 83 (160)
T ss_pred EECC
Confidence 7643
No 359
>PLN03075 nicotianamine synthase; Provisional
Probab=96.14 E-value=0.032 Score=59.07 Aligned_cols=136 Identities=11% Similarity=0.123 Sum_probs=77.2
Q ss_pred CeeEEEeecccchhHHhhhhC----CCeEEEEecCCCCCCCchHHHHh-----hcc---ccee-ccccccCCCCC--ccc
Q 006834 479 RYRNVMDMNAYLGGFAAAMSK----YPVWVMNVVPFHSNPDTLGAIYE-----RGL---IGTY-QDWCEAFSTYP--RTY 543 (629)
Q Consensus 479 ~~R~vlD~~~g~Ggfaa~l~~----~~v~~mnv~~~~~~~~~l~~~~e-----rgl---i~~~-~~~~e~f~~yp--~t~ 543 (629)
.-+.|+|+|||-|++.+.+.. .+..+.| +|..+..++.+.+ .|| +... +|..+ ..+ ..|
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~g---iD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~---~~~~l~~F 196 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHN---FDIDPSANDVARRLVSSDPDLSKRMFFHTADVMD---VTESLKEY 196 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEE---EeCCHHHHHHHHHHhhhccCccCCcEEEECchhh---cccccCCc
Confidence 557799999998877554432 1222333 3444344443332 344 2222 12222 232 689
Q ss_pred ceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCH---HHHHHHHHHHhcCCCeEEEeecCCCCCCCceEEEEE
Q 006834 544 DLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTV---EMLVKIRSITEGMRWKSQIMDHESGPFNPEKILFAA 620 (629)
Q Consensus 544 Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~---~~~~~~~~~~~~l~w~~~~~~~e~~~~~~e~~l~~~ 620 (629)
|+|=+..+ .+.+.-+.+.+|..+-|.|||||.++++--. ..+...-....-=.|+...+-|-.++ +-.-++|++
T Consensus 197 DlVF~~AL--i~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp~v~~~~~~gf~~~~~~~P~~~-v~Nsvi~~r 273 (296)
T PLN03075 197 DVVFLAAL--VGMDKEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLYPVVDPCDLRGFEVLSVFHPTDE-VINSVIIAR 273 (296)
T ss_pred CEEEEecc--cccccccHHHHHHHHHHhcCCCcEEEEecccchHhhcCCCCChhhCCCeEEEEEECCCCC-ceeeEEEEE
Confidence 99887511 1223346688999999999999999998421 11111111111117887765555444 567889999
Q ss_pred ecc
Q 006834 621 KTY 623 (629)
Q Consensus 621 K~~ 623 (629)
|.-
T Consensus 274 ~~~ 276 (296)
T PLN03075 274 KPG 276 (296)
T ss_pred eec
Confidence 964
No 360
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=96.12 E-value=0.011 Score=63.11 Aligned_cols=95 Identities=12% Similarity=0.169 Sum_probs=60.6
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcc-c-----c-eeccc-cccCCCCCcccceeeccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGL-I-----G-TYQDW-CEAFSTYPRTYDLIHASGVF 552 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergl-i-----~-~~~~~-~e~f~~yp~t~Dl~H~~~~f 552 (629)
.+|||+|||+|.++..|.+++. +|+.+|.+++++..+.+|.- . + ..-.+ +..+...+.+||+|=|..++
T Consensus 146 ~~VLDlGcGtG~~a~~la~~g~---~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~vL 222 (315)
T PLN02585 146 VTVCDAGCGTGSLAIPLALEGA---IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDVL 222 (315)
T ss_pred CEEEEecCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCEE
Confidence 3699999999999999998864 67777888889988887731 0 0 00111 12334456899998776666
Q ss_pred cccCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006834 553 SIYQDRCDITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 553 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
-.+... ....++..+.++ .+||. ||+
T Consensus 223 ~H~p~~-~~~~ll~~l~~l-~~g~l-iIs 248 (315)
T PLN02585 223 IHYPQD-KADGMIAHLASL-AEKRL-IIS 248 (315)
T ss_pred EecCHH-HHHHHHHHHHhh-cCCEE-EEE
Confidence 443321 234456666654 45555 444
No 361
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.11 E-value=0.052 Score=54.45 Aligned_cols=115 Identities=16% Similarity=0.034 Sum_probs=70.4
Q ss_pred CchHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCC-
Q 006834 203 NGADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLP- 281 (629)
Q Consensus 203 ~ga~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp- 281 (629)
.++..-+.+|.+...... .+..|+|+|+-.|+|+..+++.......|+++|+.+-- --..+.+.++|...-+
T Consensus 27 SRAa~KL~el~~k~~i~~-~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~------~~~~V~~iq~d~~~~~~ 99 (205)
T COG0293 27 SRAAYKLLELNEKFKLFK-PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK------PIPGVIFLQGDITDEDT 99 (205)
T ss_pred chHHHHHHHHHHhcCeec-CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc------cCCCceEEeeeccCccH
Confidence 344445556655554322 23489999999999999999875443235666875421 1134777777764432
Q ss_pred -------CCCCCeeEEEecCcc---cccccCH-------HHHHHHHHhcccCCcEEEEEe
Q 006834 282 -------YPARAFDMAHCSGCL---IPWYMYD-------GLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 282 -------~pd~sFDlV~~s~~L---~h~~~d~-------~~~L~el~RvLKPGG~liis~ 324 (629)
+....+|+|+|-..- -++..|. ..++.-...+|+|||.|++-.
T Consensus 100 ~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~ 159 (205)
T COG0293 100 LEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKV 159 (205)
T ss_pred HHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEE
Confidence 334457999972221 1121121 235666778999999999974
No 362
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=96.07 E-value=0.039 Score=54.52 Aligned_cols=139 Identities=19% Similarity=0.292 Sum_probs=83.5
Q ss_pred hhhHHHHHHHHHHHHHhhcccCCCCeeEEEeecccch--hHHhhhhCCCeEEEEecCCCCCCCch-HHHHhhcc--ccee
Q 006834 455 REDNELWKDRMTYYKKIDGLFHKGRYRNVMDMNAYLG--GFAAAMSKYPVWVMNVVPFHSNPDTL-GAIYERGL--IGTY 529 (629)
Q Consensus 455 ~~d~~~w~~~v~~y~~~~~~~~~~~~R~vlD~~~g~G--gfaa~l~~~~v~~mnv~~~~~~~~~l-~~~~ergl--i~~~ 529 (629)
.+..+.|.+|+-.-..+++.+..... +++|+|+|-| |.--++.....-+.=|-+..-..+.| .++.+=|| +-++
T Consensus 25 ~~~~~~~~~Hi~DSL~~~~~~~~~~~-~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~ 103 (184)
T PF02527_consen 25 RDPEEIWERHILDSLALLPFLPDFGK-KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVI 103 (184)
T ss_dssp -SHHHHHHHHHHHHHGGGGCS-CCCS-EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEE
T ss_pred CCHHHHHHHHHHHHHHhhhhhccCCc-eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEE
Confidence 44568899999777766665555443 5999999966 22233333333212122221112223 34455566 4466
Q ss_pred ccccccCCCCCcccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEE---eCHHHHHHHHHHHhcCCCeEE
Q 006834 530 QDWCEAFSTYPRTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFR---DTVEMLVKIRSITEGMRWKSQ 602 (629)
Q Consensus 530 ~~~~e~f~~yp~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~---d~~~~~~~~~~~~~~l~w~~~ 602 (629)
|.-.|. ..++..||++=| .+-..+..++.-+-+.|+|||.+++- +..+.+...++..+.+.++..
T Consensus 104 ~~R~E~-~~~~~~fd~v~a-------RAv~~l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~~~~~ 171 (184)
T PF02527_consen 104 NGRAEE-PEYRESFDVVTA-------RAVAPLDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLGLKVL 171 (184)
T ss_dssp ES-HHH-TTTTT-EEEEEE-------ESSSSHHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCCEEEE
T ss_pred Eeeecc-cccCCCccEEEe-------ehhcCHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhCCEEe
Confidence 655555 458899999887 34467787887789999999999985 444566777777777777765
No 363
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=96.03 E-value=0.0079 Score=61.32 Aligned_cols=98 Identities=16% Similarity=0.260 Sum_probs=68.5
Q ss_pred EEEeecccchhHHhhhhCC----CeEEEEecCCCCCCCchHHHHhhcc------cceeccccccCCCCC---cccceeec
Q 006834 482 NVMDMNAYLGGFAAAMSKY----PVWVMNVVPFHSNPDTLGAIYERGL------IGTYQDWCEAFSTYP---RTYDLIHA 548 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~----~v~~mnv~~~~~~~~~l~~~~ergl------i~~~~~~~e~f~~yp---~t~Dl~H~ 548 (629)
++|.+|||.|.---=|++. ++.++ .-|=+++-+.+.-++-- -..++|.++.=...| .++|++-+
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~---acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~ 150 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVY---ACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITL 150 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEE---EcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEE
Confidence 7999999999876666543 23333 23333455555555443 346667775434444 89999999
Q ss_pred cccccccCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 549 SGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 549 ~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
.-+||.-.. -.+...|-.+.|+|+|||.+++||=
T Consensus 151 IFvLSAi~p-ek~~~a~~nl~~llKPGG~llfrDY 184 (264)
T KOG2361|consen 151 IFVLSAIHP-EKMQSVIKNLRTLLKPGGSLLFRDY 184 (264)
T ss_pred EEEEeccCh-HHHHHHHHHHHHHhCCCcEEEEeec
Confidence 888886543 3577899999999999999999974
No 364
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=95.95 E-value=0.018 Score=62.54 Aligned_cols=67 Identities=19% Similarity=0.184 Sum_probs=44.8
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C-CCeEEEEecCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G-VPAMIGVISSK 278 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g-~~~~~~v~d~~ 278 (629)
..+++.+.+++...+ .+|||+-||+|.|+..|++..-. +.|+|+++++++.|+++ + .++.|..+++.
T Consensus 183 ~~l~~~~~~~l~~~~---~~vlDlycG~G~fsl~la~~~~~---V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~ 254 (352)
T PF05958_consen 183 EKLYEQALEWLDLSK---GDVLDLYCGVGTFSLPLAKKAKK---VIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAE 254 (352)
T ss_dssp HHHHHHHHHHCTT-T---TEEEEES-TTTCCHHHHHCCSSE---EEEEES-HHHHHHHHHHHHHTT--SEEEEE--SH
T ss_pred HHHHHHHHHHhhcCC---CcEEEEeecCCHHHHHHHhhCCe---EEEeeCCHHHHHHHHHHHHHcCCCcceEEEeecc
Confidence 333555555555432 27999999999999999998764 45669999999999864 3 35788776543
No 365
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=95.95 E-value=0.017 Score=64.76 Aligned_cols=122 Identities=20% Similarity=0.320 Sum_probs=64.5
Q ss_pred CcchhhchhhHHHHH---HHHHHHHHhhcccCCCC----eeEEEeecccchhHHhhh----h----CCCeEEEEecCCCC
Q 006834 448 GITAEKLREDNELWK---DRMTYYKKIDGLFHKGR----YRNVMDMNAYLGGFAAAM----S----KYPVWVMNVVPFHS 512 (629)
Q Consensus 448 ~~~~~~f~~d~~~w~---~~v~~y~~~~~~~~~~~----~R~vlD~~~g~Ggfaa~l----~----~~~v~~mnv~~~~~ 512 (629)
..+.|.|+.|.-+.. +-+. +.+...+...+ -.+|||+|||.|....+- + ...|++ ++.
T Consensus 150 s~tYe~fE~D~vKY~~Ye~AI~--~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyA-----VEk 222 (448)
T PF05185_consen 150 SQTYEVFEKDPVKYDQYERAIE--EALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYA-----VEK 222 (448)
T ss_dssp HHHHHHHCC-HHHHHHHHHHHH--HHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEE-----EES
T ss_pred cccHhhHhcCHHHHHHHHHHHH--HHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEE-----EcC
Confidence 347899999985444 3332 22222233332 246999999999885221 1 123333 232
Q ss_pred CCC---chH-HHHhhcc---cceeccccccCCCC--CcccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEE
Q 006834 513 NPD---TLG-AIYERGL---IGTYQDWCEAFSTY--PRTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIF 580 (629)
Q Consensus 513 ~~~---~l~-~~~ergl---i~~~~~~~e~f~~y--p~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~ 580 (629)
.++ +++ .+.+.|+ |.++| +..... |.-.|+|=+ -++......-.++.+|.-.||.|+|||.+|=
T Consensus 223 n~~A~~~l~~~v~~n~w~~~V~vi~---~d~r~v~lpekvDIIVS-ElLGsfg~nEl~pE~Lda~~rfLkp~Gi~IP 295 (448)
T PF05185_consen 223 NPNAVVTLQKRVNANGWGDKVTVIH---GDMREVELPEKVDIIVS-ELLGSFGDNELSPECLDAADRFLKPDGIMIP 295 (448)
T ss_dssp STHHHHHHHHHHHHTTTTTTEEEEE---S-TTTSCHSS-EEEEEE----BTTBTTTSHHHHHHHGGGGEEEEEEEES
T ss_pred CHhHHHHHHHHHHhcCCCCeEEEEe---CcccCCCCCCceeEEEE-eccCCccccccCHHHHHHHHhhcCCCCEEeC
Confidence 212 232 2244444 66666 333332 478998765 2333223334778899999999999998763
No 366
>PLN02366 spermidine synthase
Probab=95.93 E-value=0.065 Score=57.21 Aligned_cols=101 Identities=18% Similarity=0.197 Sum_probs=59.0
Q ss_pred CCeeEEEeecccchhHHhhhhCCC-eEEEEecCCCCCCCchHHHHhh------cc----cceec-cccccCCCCC-cccc
Q 006834 478 GRYRNVMDMNAYLGGFAAAMSKYP-VWVMNVVPFHSNPDTLGAIYER------GL----IGTYQ-DWCEAFSTYP-RTYD 544 (629)
Q Consensus 478 ~~~R~vlD~~~g~Ggfaa~l~~~~-v~~mnv~~~~~~~~~l~~~~er------gl----i~~~~-~~~e~f~~yp-~t~D 544 (629)
..-++|||+|+|.|+.++.+++.+ |.-+-++..|. ..+.++.+. |+ +.+++ |--+-....| +.||
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~--~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yD 167 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDK--MVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYD 167 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCH--HHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCC
Confidence 346789999999999999998874 53333444443 355554432 22 12222 1001123343 7899
Q ss_pred eeeccccccccCCC-cCHHHHHHHHhhcccCCcEEEE
Q 006834 545 LIHASGVFSIYQDR-CDITNILLEMDRILRPEGTVIF 580 (629)
Q Consensus 545 l~H~~~~fs~~~~~-c~~~~~l~e~dRiLrPgG~~i~ 580 (629)
+|-++.-....... ---+.++..+-|.|+|||.++.
T Consensus 168 vIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~ 204 (308)
T PLN02366 168 AIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCT 204 (308)
T ss_pred EEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 98775322111110 0124578899999999999987
No 367
>PRK03612 spermidine synthase; Provisional
Probab=95.91 E-value=0.022 Score=64.98 Aligned_cols=120 Identities=17% Similarity=0.161 Sum_probs=70.5
Q ss_pred CeeEEEeecccchhHHhhhhCCC-eEEEEecCCCCCCCchHHHHhhc-c------------cceec-cccccCCCCCccc
Q 006834 479 RYRNVMDMNAYLGGFAAAMSKYP-VWVMNVVPFHSNPDTLGAIYERG-L------------IGTYQ-DWCEAFSTYPRTY 543 (629)
Q Consensus 479 ~~R~vlD~~~g~Ggfaa~l~~~~-v~~mnv~~~~~~~~~l~~~~erg-l------------i~~~~-~~~e~f~~yp~t~ 543 (629)
+-++|||+|||.|+.+..+.+++ |- .|+-+|..+..++.+.+.- + +.+++ |--+-....++.|
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~--~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVE--QVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcC--eEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 45679999999999999888764 32 3333444445888877631 1 11222 1101122356899
Q ss_pred ceeeccccccccCC---CcCHHHHHHHHhhcccCCcEEEEEe-----CHHHHHHHHHHHhcCCCeE
Q 006834 544 DLIHASGVFSIYQD---RCDITNILLEMDRILRPEGTVIFRD-----TVEMLVKIRSITEGMRWKS 601 (629)
Q Consensus 544 Dl~H~~~~fs~~~~---~c~~~~~l~e~dRiLrPgG~~i~~d-----~~~~~~~~~~~~~~l~w~~ 601 (629)
|+|-++--. .... +=--++++.++-|.|+|||.+++.. ..+....+.+.+++....+
T Consensus 375 DvIi~D~~~-~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~v 439 (521)
T PRK03612 375 DVIIVDLPD-PSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGLAT 439 (521)
T ss_pred CEEEEeCCC-CCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCCEE
Confidence 998876221 1111 1011457788899999999999842 2344455555555554443
No 368
>PRK04148 hypothetical protein; Provisional
Probab=95.90 E-value=0.041 Score=51.67 Aligned_cols=93 Identities=12% Similarity=0.091 Sum_probs=70.3
Q ss_pred eEEEeecccchh-HHhhhhCCCeEEEEecCCCCCCCchHHHHhhcccceeccccccCCCCCcccceeeccccccccCCCc
Q 006834 481 RNVMDMNAYLGG-FAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAFSTYPRTYDLIHASGVFSIYQDRC 559 (629)
Q Consensus 481 R~vlD~~~g~Gg-faa~l~~~~v~~mnv~~~~~~~~~l~~~~ergli~~~~~~~e~f~~yp~t~Dl~H~~~~fs~~~~~c 559 (629)
+.|+|+|||+|. +|..|.+.+. .|+.+|.++..++-+.++|+-.+..|+-+.=...=+.+|+|-+
T Consensus 18 ~kileIG~GfG~~vA~~L~~~G~---~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liys----------- 83 (134)
T PRK04148 18 KKIVELGIGFYFKVAKKLKESGF---DVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYS----------- 83 (134)
T ss_pred CEEEEEEecCCHHHHHHHHHCCC---EEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEE-----------
Confidence 459999999996 9999999886 5566677767888899998866665544322111167888888
Q ss_pred CHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCCeEEEeecC
Q 006834 560 DITNILLEMDRILRPEGTVIFRDTVEMLVKIRSITEGMRWKSQIMDHE 607 (629)
Q Consensus 560 ~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~l~w~~~~~~~e 607 (629)
||-+.+.+..+.++++++.=++.+.-..
T Consensus 84 --------------------irpp~el~~~~~~la~~~~~~~~i~~l~ 111 (134)
T PRK04148 84 --------------------IRPPRDLQPFILELAKKINVPLIIKPLS 111 (134)
T ss_pred --------------------eCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 6677888899999999999998876544
No 369
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=95.75 E-value=0.02 Score=58.60 Aligned_cols=128 Identities=9% Similarity=0.161 Sum_probs=70.9
Q ss_pred CeeEEEeecccchhHHhhhh----CCCeEEEEecCCCCCCCchHHHH----hhcc---cceec-cccccCCC----C-Cc
Q 006834 479 RYRNVMDMNAYLGGFAAAMS----KYPVWVMNVVPFHSNPDTLGAIY----ERGL---IGTYQ-DWCEAFST----Y-PR 541 (629)
Q Consensus 479 ~~R~vlD~~~g~Ggfaa~l~----~~~v~~mnv~~~~~~~~~l~~~~----ergl---i~~~~-~~~e~f~~----y-p~ 541 (629)
.-++|||+|||+|.-+.+|+ ..+ .|+-+|..+..+.++. +-|+ |.+.+ |..+.+.. . ..
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~g----~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~ 143 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPEDG----RITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKP 143 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCCC----EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCC
Confidence 35579999999986444333 222 1222333333444443 3354 33333 33333322 2 36
Q ss_pred ccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEe---------CH--------HHHHHHHHH----HhcCCCe
Q 006834 542 TYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRD---------TV--------EMLVKIRSI----TEGMRWK 600 (629)
Q Consensus 542 t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d---------~~--------~~~~~~~~~----~~~l~w~ 600 (629)
+||+|-+++- .-....++.++-|.|||||.+++.+ +. .....|+++ ...=+|+
T Consensus 144 ~fD~VfiDa~------k~~y~~~~~~~~~ll~~GG~ii~dn~l~~G~v~~~~~~~~~~~~~~~~~ir~~~~~i~~~~~~~ 217 (234)
T PLN02781 144 EFDFAFVDAD------KPNYVHFHEQLLKLVKVGGIIAFDNTLWFGFVAQEEDEVPEHMRAYRKALLEFNKLLASDPRVE 217 (234)
T ss_pred CCCEEEECCC------HHHHHHHHHHHHHhcCCCeEEEEEcCCcCCeecCcccccchhhhHHHHHHHHHHHHHhhCCCeE
Confidence 8999877332 1234567888899999999998732 10 122344443 4444666
Q ss_pred EEEeecCCCCCCCceEEEEEec
Q 006834 601 SQIMDHESGPFNPEKILFAAKT 622 (629)
Q Consensus 601 ~~~~~~e~~~~~~e~~l~~~K~ 622 (629)
+.+.-. .+.+++++|.
T Consensus 218 ~~~lp~------gdG~~i~~k~ 233 (234)
T PLN02781 218 ISQISI------GDGVTLCRRL 233 (234)
T ss_pred EEEEEe------CCccEEEEEe
Confidence 666644 3568888875
No 370
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=95.72 E-value=0.018 Score=63.46 Aligned_cols=123 Identities=17% Similarity=0.191 Sum_probs=71.1
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHh----hcc----cceec-cccccCCCC---Ccccceeec
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYE----RGL----IGTYQ-DWCEAFSTY---PRTYDLIHA 548 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----rgl----i~~~~-~~~e~f~~y---p~t~Dl~H~ 548 (629)
++|||++||+|+|+-+++..+- -.|+.+|.++..+..+.+ -|+ +-+++ |..+.+..+ .++||+|=+
T Consensus 222 ~rVLDlfsgtG~~~l~aa~~ga--~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 222 KRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CeEEEeccCCCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 4699999999999866544442 234445555556655433 143 11222 222222222 258999887
Q ss_pred cccc-cccC-----CCcCHHHHHHHHhhcccCCcEEEEEeC------HHHHHHHHHHHhcCCCeEEEee
Q 006834 549 SGVF-SIYQ-----DRCDITNILLEMDRILRPEGTVIFRDT------VEMLVKIRSITEGMRWKSQIMD 605 (629)
Q Consensus 549 ~~~f-s~~~-----~~c~~~~~l~e~dRiLrPgG~~i~~d~------~~~~~~~~~~~~~l~w~~~~~~ 605 (629)
+-=+ +..+ ......+++.-.-++|+|||.+++... .+..+.+.+.+..-..+.++..
T Consensus 300 DPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~~l~ 368 (396)
T PRK15128 300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIE 368 (396)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 6432 1111 113455677777899999999998422 3345566666666666666553
No 371
>PHA03411 putative methyltransferase; Provisional
Probab=95.66 E-value=0.015 Score=60.96 Aligned_cols=97 Identities=15% Similarity=0.212 Sum_probs=64.1
Q ss_pred eEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhhcccceeccccccCCCCC--cccceeeccccccccC-
Q 006834 481 RNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAFSTYP--RTYDLIHASGVFSIYQ- 556 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~ergli~~~~~~~e~f~~yp--~t~Dl~H~~~~fs~~~- 556 (629)
.+|||+|||.|.++..+.++ +- .+|+.+|.++.+++.+.++ +.. ..-.+..+..++ ++||+|=++-=|-...
T Consensus 66 grVLDLGcGsGilsl~la~r~~~--~~V~gVDisp~al~~Ar~n-~~~-v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~ 141 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRCKP--EKIVCVELNPEFARIGKRL-LPE-AEWITSDVFEFESNEKFDVVISNPPFGKINT 141 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHh-CcC-CEEEECchhhhcccCCCcEEEEcCCccccCc
Confidence 36999999999998888664 11 3566667776788877765 211 111234444444 7899988866654211
Q ss_pred ----C-----------Cc-CHHHHHHHHhhcccCCcEEEEE
Q 006834 557 ----D-----------RC-DITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 557 ----~-----------~c-~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
. .+ .+...+...-++|+|+|.+++-
T Consensus 142 ~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 142 TDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred hhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 0 11 1467889999999999988874
No 372
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=95.47 E-value=0.018 Score=55.77 Aligned_cols=67 Identities=19% Similarity=0.140 Sum_probs=44.9
Q ss_pred eEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC--CeEEEEecCCCCC--CCCCC-eeEEEecC
Q 006834 225 TAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV--PAMIGVISSKRLP--YPARA-FDMAHCSG 294 (629)
Q Consensus 225 ~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~~~Lp--~pd~s-FDlV~~s~ 294 (629)
+|||+.||.|..+..+++....++ ++|+++..++.|+.+ |+ ++.+..+|...+. +..+. ||+|+++.
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Vi---aidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVI---AIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEE---EEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred EEEEeccCcCHHHHHHHHhCCeEE---EEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 799999999999999999976554 559999999999865 33 5888888865542 22222 89999855
No 373
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=95.35 E-value=0.079 Score=55.61 Aligned_cols=102 Identities=10% Similarity=0.041 Sum_probs=61.0
Q ss_pred CCeEEEeCCCCchHHHHHHH-cCCcEeEEEeecCcHHHHHHHHHc-------CCCeEEEEecCCCCCCCCCCeeEEEecC
Q 006834 223 IRTAVDTGCGVASWGAYLLK-RDILTMSFARRDTHEAQVQFALER-------GVPAMIGVISSKRLPYPARAFDMAHCSG 294 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~-~g~~~v~i~gvDiS~~~i~~A~er-------g~~~~~~v~d~~~Lp~pd~sFDlV~~s~ 294 (629)
+++|+=||||.=-++..+.. +......+.++|+++++++.+++- +....|..+|....+..-..||+|+.+.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 56999999997666655554 322234577889999999999742 3567888888776665556899999766
Q ss_pred cccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 295 CLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 295 ~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
....-..+...+|..+.+.++||..+++..
T Consensus 201 lVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 201 LVGMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp T-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred hcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 442222345789999999999999999863
No 374
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=95.34 E-value=0.15 Score=51.78 Aligned_cols=113 Identities=12% Similarity=0.061 Sum_probs=70.1
Q ss_pred hHHHHHHHHhhcC---ccCCCCCeEEEeCCCCchHHHHHHHc-CCcEeEEEeecCcH----HHHHHHHHcCCCeEEEEec
Q 006834 205 ADAYIDNINELIP---LTGGNIRTAVDTGCGVASWGAYLLKR-DILTMSFARRDTHE----AQVQFALERGVPAMIGVIS 276 (629)
Q Consensus 205 a~~~i~~I~~lL~---~~~g~~~~VLDIGCGtG~~a~~La~~-g~~~v~i~gvDiS~----~~i~~A~erg~~~~~~v~d 276 (629)
+..+...|..-+. ..++. +||-+|..+|.....++.- +..+ .+++++.|+ ..+..|++| .++.-...|
T Consensus 55 RSKLaAai~~Gl~~~~ik~gs--kVLYLGAasGTTVSHvSDIvg~~G-~VYaVEfs~r~~rdL~~la~~R-~NIiPIl~D 130 (229)
T PF01269_consen 55 RSKLAAAILKGLENIPIKPGS--KVLYLGAASGTTVSHVSDIVGPDG-VVYAVEFSPRSMRDLLNLAKKR-PNIIPILED 130 (229)
T ss_dssp T-HHHHHHHTT-S--S--TT---EEEEETTTTSHHHHHHHHHHTTTS-EEEEEESSHHHHHHHHHHHHHS-TTEEEEES-
T ss_pred hhHHHHHHHcCccccCCCCCC--EEEEecccCCCccchhhhccCCCC-cEEEEEecchhHHHHHHHhccC-Cceeeeecc
Confidence 4555555554443 34444 9999999999988888874 2222 357779998 556666666 345545556
Q ss_pred CCCCC-C--CCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 277 SKRLP-Y--PARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 277 ~~~Lp-~--pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
+..-. | --+..|+|++--. -+.+.+.++.++...||+||+++++.
T Consensus 131 Ar~P~~Y~~lv~~VDvI~~DVa---Qp~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 131 ARHPEKYRMLVEMVDVIFQDVA---QPDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp TTSGGGGTTTS--EEEEEEE-S---STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCChHHhhcccccccEEEecCC---ChHHHHHHHHHHHhhccCCcEEEEEE
Confidence 54321 1 1348999997432 12124568888999999999999985
No 375
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=95.23 E-value=0.026 Score=60.82 Aligned_cols=129 Identities=20% Similarity=0.355 Sum_probs=68.7
Q ss_pred hHHHHHHHHH--HHHHhhcccCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhc----------
Q 006834 457 DNELWKDRMT--YYKKIDGLFHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERG---------- 524 (629)
Q Consensus 457 d~~~w~~~v~--~y~~~~~~~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~erg---------- 524 (629)
.-+.|-+.+- .|...+. ....-.+||||+||=||=---....+| -.++.+|-+...++-+.+|=
T Consensus 40 ~fNNwvKs~LI~~~~~~~~--~~~~~~~VLDl~CGkGGDL~Kw~~~~i--~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~ 115 (331)
T PF03291_consen 40 NFNNWVKSVLIQKYAKKVK--QNRPGLTVLDLCCGKGGDLQKWQKAKI--KHYVGIDISEESIEEARERYKQLKKRNNSK 115 (331)
T ss_dssp HHHHHHHHHHHHHHCHCCC--CTTTT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTSTT-H
T ss_pred HHhHHHHHHHHHHHHHhhh--ccCCCCeEEEecCCCchhHHHHHhcCC--CEEEEEeCCHHHHHHHHHHHHHhccccccc
Confidence 3355776653 3433221 222456799999999985444444444 33444455545666666654
Q ss_pred -----ccceeccccccCCC-----CC---cccceeeccccccc---cCCCcCHHHHHHHHhhcccCCcEEEEE--eCHHH
Q 006834 525 -----LIGTYQDWCEAFST-----YP---RTYDLIHASGVFSI---YQDRCDITNILLEMDRILRPEGTVIFR--DTVEM 586 (629)
Q Consensus 525 -----li~~~~~~~e~f~~-----yp---~t~Dl~H~~~~fs~---~~~~c~~~~~l~e~dRiLrPgG~~i~~--d~~~~ 586 (629)
+....+ .+..|.. ++ +.||+|=| -|++ ..+.-....+|.-+-.-|||||+||.| |...+
T Consensus 116 ~~~~~f~a~f~-~~D~f~~~l~~~~~~~~~~FDvVSc--QFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i 192 (331)
T PF03291_consen 116 QYRFDFIAEFI-AADCFSESLREKLPPRSRKFDVVSC--QFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEI 192 (331)
T ss_dssp TSEECCEEEEE-ESTTCCSHHHCTSSSTTS-EEEEEE--ES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHH
T ss_pred cccccchhhee-ccccccchhhhhccccCCCcceeeh--HHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHH
Confidence 222111 1122222 33 59999766 3332 223333456999999999999999998 44444
Q ss_pred HHHHHH
Q 006834 587 LVKIRS 592 (629)
Q Consensus 587 ~~~~~~ 592 (629)
+.++++
T Consensus 193 ~~~l~~ 198 (331)
T PF03291_consen 193 VKRLRE 198 (331)
T ss_dssp HCCHHC
T ss_pred HHHHHh
Confidence 445554
No 376
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=95.21 E-value=0.068 Score=56.31 Aligned_cols=114 Identities=18% Similarity=0.181 Sum_probs=74.9
Q ss_pred HHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCCC-C-CCC
Q 006834 212 INELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKRL-P-YPA 284 (629)
Q Consensus 212 I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~L-p-~pd 284 (629)
....+...++. +|||+.+|.|.=+..|++.....-.+++.|++..-+...+++ |. ++.....|.... + ...
T Consensus 77 ~~~~L~~~~~~--~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~ 154 (283)
T PF01189_consen 77 VALALDPQPGE--RVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPE 154 (283)
T ss_dssp HHHHHTTTTTS--EEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHT
T ss_pred ccccccccccc--cccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccc
Confidence 33444444444 899999999999999988754233567789999988877654 43 344554565544 1 234
Q ss_pred CCeeEEEe----cCc--ccccc-------cC--------HHHHHHHHHhcc----cCCcEEEEEeCCC
Q 006834 285 RAFDMAHC----SGC--LIPWY-------MY--------DGLYLLEVDRVL----RPGGYWILSGPPI 327 (629)
Q Consensus 285 ~sFDlV~~----s~~--L~h~~-------~d--------~~~~L~el~RvL----KPGG~liis~P~~ 327 (629)
..||.|+. +.. +..-+ .. ...+|..+.+.| ||||+++.++-..
T Consensus 155 ~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~ 222 (283)
T PF01189_consen 155 SKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL 222 (283)
T ss_dssp TTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred cccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence 46999995 222 21111 00 125799999999 9999999997533
No 377
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=95.20 E-value=0.024 Score=54.65 Aligned_cols=93 Identities=9% Similarity=0.086 Sum_probs=55.6
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhc----ccceeccccccCCCCC---cccceeecccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERG----LIGTYQDWCEAFSTYP---RTYDLIHASGVFS 553 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~erg----li~~~~~~~e~f~~yp---~t~Dl~H~~~~fs 553 (629)
.+|||+|||.|.++..|+++. -.|+.+|.++.+++.+.++- -+.+++ +.+..++ ..||.|=++--|.
T Consensus 15 ~~vLEiG~G~G~lt~~l~~~~---~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~---~D~~~~~~~~~~~d~vi~n~Py~ 88 (169)
T smart00650 15 DTVLEIGPGKGALTEELLERA---ARVTAIEIDPRLAPRLREKFAAADNLTVIH---GDALKFDLPKLQPYKVVGNLPYN 88 (169)
T ss_pred CEEEEECCCccHHHHHHHhcC---CeEEEEECCHHHHHHHHHHhccCCCEEEEE---CchhcCCccccCCCEEEECCCcc
Confidence 469999999999999999873 34555666656777776552 133444 4444443 3578765533332
Q ss_pred ccCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 554 IYQDRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 554 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
. ..-.+..++.+ .-+.++|.+++...
T Consensus 89 ~--~~~~i~~~l~~--~~~~~~~~l~~q~e 114 (169)
T smart00650 89 I--STPILFKLLEE--PPAFRDAVLMVQKE 114 (169)
T ss_pred c--HHHHHHHHHhc--CCCcceEEEEEEHH
Confidence 2 12223333322 22569999998743
No 378
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=95.19 E-value=0.041 Score=54.06 Aligned_cols=115 Identities=14% Similarity=0.184 Sum_probs=69.2
Q ss_pred EEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchH----HHHhhcc---cceec-cccccCCCCCcccceeecccccc
Q 006834 482 NVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLG----AIYERGL---IGTYQ-DWCEAFSTYPRTYDLIHASGVFS 553 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~----~~~ergl---i~~~~-~~~e~f~~yp~t~Dl~H~~~~fs 553 (629)
+|||+|||-|.+=..|++.+.-- -++.+|=++..+. ++..+|+ |...+ |.-.. ...+.-||+||=-|-|.
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~-~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~-~~~~~qfdlvlDKGT~D 147 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQS-KLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP-DFLSGQFDLVLDKGTLD 147 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCC-CccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC-cccccceeEEeecCcee
Confidence 79999999999999999876311 1445554433332 2334455 22221 22222 33456788888655553
Q ss_pred ---cc--CCCcCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCC
Q 006834 554 ---IY--QDRCDITNILLEMDRILRPEGTVIFRDTVEMLVKIRSITEGMR 598 (629)
Q Consensus 554 ---~~--~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~l~ 598 (629)
+. .....+.-.+--++++|+|||.|+|+.-.-..++|.+......
T Consensus 148 AisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f~~~~ 197 (227)
T KOG1271|consen 148 AISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEFENFN 197 (227)
T ss_pred eeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHHHhcCC
Confidence 21 1112223466678999999999999976655556666555444
No 379
>PHA03412 putative methyltransferase; Provisional
Probab=95.16 E-value=0.033 Score=57.14 Aligned_cols=94 Identities=16% Similarity=0.115 Sum_probs=58.0
Q ss_pred EEEeecccchhHHhhhhCC----CeEEEEecCCCCCCCchHHHHhhcccceeccccccCCCCC--cccceeecccccccc
Q 006834 482 NVMDMNAYLGGFAAAMSKY----PVWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAFSTYP--RTYDLIHASGVFSIY 555 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~----~v~~mnv~~~~~~~~~l~~~~ergli~~~~~~~e~f~~yp--~t~Dl~H~~~~fs~~ 555 (629)
.|||+|||+|.++.+++++ +. .+|..+|-.++.+..+.+. +.. .+-.+..+..++ .+||+|=++==|...
T Consensus 52 rVLDlG~GSG~Lalala~~~~~~~~--~~V~aVEID~~Al~~Ar~n-~~~-~~~~~~D~~~~~~~~~FDlIIsNPPY~~~ 127 (241)
T PHA03412 52 SVVDLCAGIGGLSFAMVHMMMYAKP--REIVCVELNHTYYKLGKRI-VPE-ATWINADALTTEFDTLFDMAISNPPFGKI 127 (241)
T ss_pred EEEEccChHHHHHHHHHHhcccCCC--cEEEEEECCHHHHHHHHhh-ccC-CEEEEcchhcccccCCccEEEECCCCCCc
Confidence 6999999999999988653 22 3566666665566666533 311 222224444443 689998776555421
Q ss_pred -----CC---CcCHHH-HHHHHhhcccCCcEEEE
Q 006834 556 -----QD---RCDITN-ILLEMDRILRPEGTVIF 580 (629)
Q Consensus 556 -----~~---~c~~~~-~l~e~dRiLrPgG~~i~ 580 (629)
.. ...+.. ++...-|+||||+. |+
T Consensus 128 ~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL 160 (241)
T PHA03412 128 KTSDFKGKYTGAEFEYKVIERASQIARQGTF-II 160 (241)
T ss_pred cccccCCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence 12 223344 77777888888887 55
No 380
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=95.15 E-value=0.05 Score=51.06 Aligned_cols=43 Identities=26% Similarity=0.237 Sum_probs=35.0
Q ss_pred CCCeEEEeCCCCchHHHHHHH-----cCCcEeEEEeecCcHHHHHHHHHc
Q 006834 222 NIRTAVDTGCGVASWGAYLLK-----RDILTMSFARRDTHEAQVQFALER 266 (629)
Q Consensus 222 ~~~~VLDIGCGtG~~a~~La~-----~g~~~v~i~gvDiS~~~i~~A~er 266 (629)
...+|+|+|||.|.++..|+. . ....+.++|.++..++.|.++
T Consensus 25 ~~~~vvD~GsG~GyLs~~La~~l~~~~--~~~~v~~iD~~~~~~~~a~~~ 72 (141)
T PF13679_consen 25 RCITVVDLGSGKGYLSRALAHLLCNSS--PNLRVLGIDCNESLVESAQKR 72 (141)
T ss_pred CCCEEEEeCCChhHHHHHHHHHHHhcC--CCCeEEEEECCcHHHHHHHHH
Confidence 355899999999999999998 3 234567779999999988865
No 381
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=95.13 E-value=0.057 Score=54.55 Aligned_cols=127 Identities=14% Similarity=0.211 Sum_probs=72.7
Q ss_pred CCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHH-----hhcccceecccc-ccCCCCCcccceeecccc
Q 006834 478 GRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIY-----ERGLIGTYQDWC-EAFSTYPRTYDLIHASGV 551 (629)
Q Consensus 478 ~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~-----ergli~~~~~~~-e~f~~yp~t~Dl~H~~~~ 551 (629)
.....+||.|||.|=....|+-.-.-.+-++... +..+..+. +.+-++.+..-. |.|.+=+..||+|=+-=+
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~--~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~ 131 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPV--EKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWC 131 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCCCC-SEEEEEES---HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-
T ss_pred CCcceEEecccccchhHHHHHHHhcCEeEEeccC--HHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHh
Confidence 3567799999999999988866533222333332 35788887 344455444222 556555589999765333
Q ss_pred ccccCCCcCHHHHHHHHhhcccCCcEEEEEeCH-----------H-----HHHHHHHHHhcCCCeEEEeecC
Q 006834 552 FSIYQDRCDITNILLEMDRILRPEGTVIFRDTV-----------E-----MLVKIRSITEGMRWKSQIMDHE 607 (629)
Q Consensus 552 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~-----------~-----~~~~~~~~~~~l~w~~~~~~~e 607 (629)
.... ...++..+|...-.-|||+|.+|+.++. + ....+++|.++=.+.+...+.+
T Consensus 132 lghL-TD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q 202 (218)
T PF05891_consen 132 LGHL-TDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQ 202 (218)
T ss_dssp GGGS--HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-
T ss_pred hccC-CHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccc
Confidence 2222 2235566888888999999999997543 1 1566777777777766554444
No 382
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=95.06 E-value=0.16 Score=54.72 Aligned_cols=133 Identities=14% Similarity=0.058 Sum_probs=82.7
Q ss_pred CeeeecCCCCCCCCchHHH-HHHHHhhcCcc-CCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc-
Q 006834 190 HRFRFPGGGTTFPNGADAY-IDNINELIPLT-GGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER- 266 (629)
Q Consensus 190 ~~~~Fpgggt~f~~ga~~~-i~~I~~lL~~~-~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er- 266 (629)
+.--|-.|+-+|....+.- .+.+. +-+.. -..-++||-+|.|.|--+++|++.- ....|+-+|++++|++.++..
T Consensus 256 d~rLYldG~LQfsTrDe~RYhEsLV-~pals~~~~a~~vLvlGGGDGLAlRellkyP-~~~qI~lVdLDP~miela~~~~ 333 (508)
T COG4262 256 DLRLYLDGGLQFSTRDEYRYHESLV-YPALSSVRGARSVLVLGGGDGLALRELLKYP-QVEQITLVDLDPRMIELASHAT 333 (508)
T ss_pred ceEEEEcCceeeeechhhhhhheee-ecccccccccceEEEEcCCchHHHHHHHhCC-CcceEEEEecCHHHHHHhhhhh
Confidence 3344556667774443322 22221 11111 1224689999999999999998873 244678889999999999832
Q ss_pred -----------CCCeEEEEecCCCC-CCCCCCeeEEEecCcccccccC-----HHHHHHHHHhcccCCcEEEEEeC
Q 006834 267 -----------GVPAMIGVISSKRL-PYPARAFDMAHCSGCLIPWYMY-----DGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 267 -----------g~~~~~~v~d~~~L-p~pd~sFDlV~~s~~L~h~~~d-----~~~~L~el~RvLKPGG~liis~P 325 (629)
.+.+.+...|+.++ .-..+.||.|+.-.- .+-.+. -..+..-+.|.|+++|.+++..-
T Consensus 334 vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl~-DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQag 408 (508)
T COG4262 334 VLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDLP-DPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAG 408 (508)
T ss_pred HhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEEEeCC-CCCCcchhhhhhHHHHHHHHHhcCcCceEEEecC
Confidence 13455666555443 233568999996321 011111 13577888999999999999653
No 383
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=94.90 E-value=0.16 Score=50.54 Aligned_cols=95 Identities=15% Similarity=0.088 Sum_probs=62.5
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHH----HcCCCeEEEEecCCCCCCCCCCeeEEEecCcccc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFAL----ERGVPAMIGVISSKRLPYPARAFDMAHCSGCLIP 298 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~----erg~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h 298 (629)
+++|||+|.|+|..+..-+..|.. .++..|+.+..++..+ .++..+.+...|... .+..||+|+.+.++..
T Consensus 80 gkrVLd~gagsgLvaIAaa~aGA~--~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g---~~~~~Dl~LagDlfy~ 154 (218)
T COG3897 80 GKRVLDLGAGSGLVAIAAARAGAA--EVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG---SPPAFDLLLAGDLFYN 154 (218)
T ss_pred cceeeecccccChHHHHHHHhhhH--HHHhcCCChHHHHHhhcchhhccceeEEeeccccC---CCcceeEEEeeceecC
Confidence 559999999999888887777754 2344577776666554 334555555444332 5678999999888733
Q ss_pred cccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 299 WYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 299 ~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
-. .-..++. ..+.|+-.|.-++.+
T Consensus 155 ~~-~a~~l~~-~~~~l~~~g~~vlvg 178 (218)
T COG3897 155 HT-EADRLIP-WKDRLAEAGAAVLVG 178 (218)
T ss_pred ch-HHHHHHH-HHHHHHhCCCEEEEe
Confidence 22 2344555 666666666666654
No 384
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=94.82 E-value=0.17 Score=56.61 Aligned_cols=130 Identities=16% Similarity=0.307 Sum_probs=78.2
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc--cceec-cccccCCC--CC-cccceeeccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL--IGTYQ-DWCEAFST--YP-RTYDLIHASG 550 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl--i~~~~-~~~e~f~~--yp-~t~Dl~H~~~ 550 (629)
..|||+|||+|.|+.+|++.. ..|+.+|.++.++..+.+. |+ +-.++ |+-+.+.. ++ .+||+|-++
T Consensus 299 ~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~d- 374 (443)
T PRK13168 299 DRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLD- 374 (443)
T ss_pred CEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEEC-
Confidence 369999999999999998874 3567777777788776653 43 22333 33333322 32 679987652
Q ss_pred cccccCCCcCHHHHHHHHhhcccCCcEEEEE-eCHHHHHHHHHHHhcCCCeEE---EeecCCCCCCCceEEEEEe
Q 006834 551 VFSIYQDRCDITNILLEMDRILRPEGTVIFR-DTVEMLVKIRSITEGMRWKSQ---IMDHESGPFNPEKILFAAK 621 (629)
Q Consensus 551 ~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~-d~~~~~~~~~~~~~~l~w~~~---~~~~e~~~~~~e~~l~~~K 621 (629)
..|..+..++..+-+ |+|++.++++ ++...-..++.+.+. -|++. .+|.=.....=|-|.+..|
T Consensus 375 -----PPr~g~~~~~~~l~~-~~~~~ivyvSCnp~tlaRDl~~L~~~-gY~l~~i~~~DmFP~T~HvE~v~lL~r 442 (443)
T PRK13168 375 -----PPRAGAAEVMQALAK-LGPKRIVYVSCNPATLARDAGVLVEA-GYRLKRAGMLDMFPHTGHVESMALFER 442 (443)
T ss_pred -----cCCcChHHHHHHHHh-cCCCeEEEEEeChHHhhccHHHHhhC-CcEEEEEEEeccCCCCCcEEEEEEEEe
Confidence 134445666655555 6999999998 444445556655432 35543 4454333333355554443
No 385
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=94.75 E-value=0.068 Score=59.42 Aligned_cols=111 Identities=16% Similarity=0.203 Sum_probs=66.5
Q ss_pred EEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHh----hcc--cceec-cccccCCCCC---cccceeecccc
Q 006834 482 NVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYE----RGL--IGTYQ-DWCEAFSTYP---RTYDLIHASGV 551 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----rgl--i~~~~-~~~e~f~~yp---~t~Dl~H~~~~ 551 (629)
.|||++||+|.|+..|++.. -.|+.+|..+.++..+.+ .|+ +-+++ |..+.+..++ .+||+|-.+-
T Consensus 295 ~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dP- 370 (431)
T TIGR00479 295 LVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDP- 370 (431)
T ss_pred EEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECc-
Confidence 59999999999999998753 245556665566665544 243 33343 3333233332 4688765411
Q ss_pred ccccCCCcC-HHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCCeEE
Q 006834 552 FSIYQDRCD-ITNILLEMDRILRPEGTVIFRDTVEMLVKIRSITEGMRWKSQ 602 (629)
Q Consensus 552 fs~~~~~c~-~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~l~w~~~ 602 (629)
.|-. .+.++.++.+ |+|+|.++++-+...+.+--+.+..-.|++.
T Consensus 371 -----Pr~G~~~~~l~~l~~-l~~~~ivyvsc~p~tlard~~~l~~~gy~~~ 416 (431)
T TIGR00479 371 -----PRKGCAAEVLRTIIE-LKPERIVYVSCNPATLARDLEFLCKEGYGIT 416 (431)
T ss_pred -----CCCCCCHHHHHHHHh-cCCCEEEEEcCCHHHHHHHHHHHHHCCeeEE
Confidence 2222 3556666665 8999999998666655444444444456554
No 386
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=94.58 E-value=0.31 Score=50.91 Aligned_cols=102 Identities=15% Similarity=0.016 Sum_probs=57.8
Q ss_pred CCeEEEeCCCC--chHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc---CCC--eEEEEecCCCCC-----------CCC
Q 006834 223 IRTAVDTGCGV--ASWGAYLLKRDILTMSFARRDTHEAQVQFALER---GVP--AMIGVISSKRLP-----------YPA 284 (629)
Q Consensus 223 ~~~VLDIGCGt--G~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er---g~~--~~~~v~d~~~Lp-----------~pd 284 (629)
.+..||||||. ......+++.-.....+.=+|+.+-.+..++.. ..+ ..++.+|..+.. +.-
T Consensus 69 IrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~ 148 (267)
T PF04672_consen 69 IRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDF 148 (267)
T ss_dssp --EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--T
T ss_pred cceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCC
Confidence 56899999993 344566665422222444559999999877653 344 678888865421 111
Q ss_pred CCeeEEEecCccccccc--CHHHHHHHHHhcccCCcEEEEEe
Q 006834 285 RAFDMAHCSGCLIPWYM--YDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 285 ~sFDlV~~s~~L~h~~~--d~~~~L~el~RvLKPGG~liis~ 324 (629)
..-=.++...+|+++.+ ++..++..+...|.||.+|+|+.
T Consensus 149 ~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish 190 (267)
T PF04672_consen 149 DRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISH 190 (267)
T ss_dssp TS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEE
T ss_pred CCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEe
Confidence 12224556677867764 37789999999999999999995
No 387
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=94.48 E-value=0.013 Score=51.79 Aligned_cols=95 Identities=16% Similarity=0.073 Sum_probs=38.8
Q ss_pred EEeCCCCchHHHHHHHcCCcE--eEEEeecCcH---HHHHHHHHcC--CCeEEEEecCCCC-C-CCCCCeeEEEecCccc
Q 006834 227 VDTGCGVASWGAYLLKRDILT--MSFARRDTHE---AQVQFALERG--VPAMIGVISSKRL-P-YPARAFDMAHCSGCLI 297 (629)
Q Consensus 227 LDIGCGtG~~a~~La~~g~~~--v~i~gvDiS~---~~i~~A~erg--~~~~~~v~d~~~L-p-~pd~sFDlV~~s~~L~ 297 (629)
||+|+..|..+..+++..... ..++++|..+ ...+..++.+ ..+.+..++.... + ++.++||+|+.-..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~-- 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD-- 78 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC--
Confidence 689999999888888743221 2466779888 3444444332 3477777765432 1 33579999997442
Q ss_pred ccccCHHHHHHHHHhcccCCcEEEEE
Q 006834 298 PWYMYDGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 298 h~~~d~~~~L~el~RvLKPGG~liis 323 (629)
|-.+.....+..+.+.|+|||++++-
T Consensus 79 H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 79 HSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp --HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 22223456788999999999999874
No 388
>PLN02476 O-methyltransferase
Probab=94.44 E-value=0.089 Score=55.33 Aligned_cols=132 Identities=11% Similarity=0.137 Sum_probs=74.8
Q ss_pred CCeeEEEeecccchhHHhhhhC----CC-eEEEEecCCCCCCCchHHHHhhcc---cceec-cccccCCCC-----Cccc
Q 006834 478 GRYRNVMDMNAYLGGFAAAMSK----YP-VWVMNVVPFHSNPDTLGAIYERGL---IGTYQ-DWCEAFSTY-----PRTY 543 (629)
Q Consensus 478 ~~~R~vlD~~~g~Ggfaa~l~~----~~-v~~mnv~~~~~~~~~l~~~~ergl---i~~~~-~~~e~f~~y-----p~t~ 543 (629)
.+-++||++|+++|..+.+|+. .+ |+++=.-|.... -..+.+.+-|+ |-+.+ +-.+.+..+ +.+|
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~-~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLE-VAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHH-HHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 3456899999999999988875 22 333222221111 12223344455 22332 222322222 3589
Q ss_pred ceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCH------------HHHHHHHH----HHhcCCCeEEEeecC
Q 006834 544 DLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTV------------EMLVKIRS----ITEGMRWKSQIMDHE 607 (629)
Q Consensus 544 Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~------------~~~~~~~~----~~~~l~w~~~~~~~e 607 (629)
|+|=.++ +.-+...++...-+.|||||.+|+-+-. .....|++ +.+.=++++.+.-.
T Consensus 196 D~VFIDa------~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d~~t~~ir~fn~~v~~d~~~~~~llPi- 268 (278)
T PLN02476 196 DFAFVDA------DKRMYQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVNDAKTISIRNFNKKLMDDKRVSISMVPI- 268 (278)
T ss_pred CEEEECC------CHHHHHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCCHHHHHHHHHHHHHhhCCCEEEEEEEe-
Confidence 9877632 2334567888888999999999884210 01123333 45555677777644
Q ss_pred CCCCCCceEEEEEec
Q 006834 608 SGPFNPEKILFAAKT 622 (629)
Q Consensus 608 ~~~~~~e~~l~~~K~ 622 (629)
.+.+++++|+
T Consensus 269 -----gDGl~i~~K~ 278 (278)
T PLN02476 269 -----GDGMTICRKR 278 (278)
T ss_pred -----CCeeEEEEEC
Confidence 3568888884
No 389
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=94.36 E-value=0.051 Score=54.64 Aligned_cols=133 Identities=16% Similarity=0.258 Sum_probs=78.2
Q ss_pred CCCeeEEEeecccchhHHhhhhCC-----CeEEEEecCCCCCCCchHHHHhhcc---cceec-cccccCCCC-----Ccc
Q 006834 477 KGRYRNVMDMNAYLGGFAAAMSKY-----PVWVMNVVPFHSNPDTLGAIYERGL---IGTYQ-DWCEAFSTY-----PRT 542 (629)
Q Consensus 477 ~~~~R~vlD~~~g~Ggfaa~l~~~-----~v~~mnv~~~~~~~~~l~~~~ergl---i~~~~-~~~e~f~~y-----p~t 542 (629)
..+-++||.+|+++|--|.+|++- .|+++-+-|.... -..+.+..-|+ |-+.+ +..+.+... +.+
T Consensus 43 ~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~-~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~ 121 (205)
T PF01596_consen 43 LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAE-IARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQ 121 (205)
T ss_dssp HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHH-HHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTS
T ss_pred hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHH-HHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCc
Confidence 345678999999999877777642 3455544432221 22233344466 44444 344433332 358
Q ss_pred cceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCH----------------HHHHHHHHHHhcCCCeEEEeec
Q 006834 543 YDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTV----------------EMLVKIRSITEGMRWKSQIMDH 606 (629)
Q Consensus 543 ~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~----------------~~~~~~~~~~~~l~w~~~~~~~ 606 (629)
||+|=.++ +.-+....+..+-+.|||||.+|+-+.. .+..-.+.+.+.=+.++.+...
T Consensus 122 fD~VFiDa------~K~~y~~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~~~~~~ir~f~~~i~~d~~~~~~llpi 195 (205)
T PF01596_consen 122 FDFVFIDA------DKRNYLEYFEKALPLLRPGGVIIADNVLWRGSVADPDDEDPKTVAIREFNEYIANDPRFETVLLPI 195 (205)
T ss_dssp EEEEEEES------TGGGHHHHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGSHHHHHHHHHHHHHHH-TTEEEEEECS
T ss_pred eeEEEEcc------cccchhhHHHHHhhhccCCeEEEEccccccceecCccchhhhHHHHHHHHHHHHhCCCeeEEEEEe
Confidence 99977643 3334556677777999999999986321 1223344445556777777654
Q ss_pred CCCCCCCceEEEEEec
Q 006834 607 ESGPFNPEKILFAAKT 622 (629)
Q Consensus 607 e~~~~~~e~~l~~~K~ 622 (629)
.+.|++++|+
T Consensus 196 ------gdGl~l~~K~ 205 (205)
T PF01596_consen 196 ------GDGLTLARKR 205 (205)
T ss_dssp ------TTEEEEEEE-
T ss_pred ------CCeeEEEEEC
Confidence 3679999985
No 390
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=94.35 E-value=0.054 Score=59.05 Aligned_cols=118 Identities=17% Similarity=0.220 Sum_probs=66.9
Q ss_pred chhhHHHHHHHHHHHHHhhcccCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcccceec---
Q 006834 454 LREDNELWKDRMTYYKKIDGLFHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGLIGTYQ--- 530 (629)
Q Consensus 454 f~~d~~~w~~~v~~y~~~~~~~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergli~~~~--- 530 (629)
+.++-..|.+ .++|.-+...+.++. -++|+|||+|+...+...-.. -++...+....++...-+ ..++.+-
T Consensus 88 ~~~~~~~~~~-~~~~~~l~~~~~~~~--~~~~~~~g~~~~~~~i~~f~~--~~~~Gl~~n~~e~~~~~~-~~~~~~l~~k 161 (364)
T KOG1269|consen 88 GNSNEMFWIR-HEGIVALRESCFPGS--KVLDVGTGVGGPSRYIAVFKK--AGVVGLDNNAYEAFRANE-LAKKAYLDNK 161 (364)
T ss_pred hhHHHHHHHh-hcchHHHhhcCcccc--cccccCcCcCchhHHHHHhcc--CCccCCCcCHHHHHHHHH-HHHHHHhhhh
Confidence 4444455553 445555544556665 478999999999988865432 233444443222222221 1122111
Q ss_pred -----cccccCCCCC-cccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006834 531 -----DWCEAFSTYP-RTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 531 -----~~~e~f~~yp-~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
.|+. ...++ .+||.+-+. ....+.-+.+.++.|+.|+|+|||++|.-
T Consensus 162 ~~~~~~~~~-~~~fedn~fd~v~~l---d~~~~~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 162 CNFVVADFG-KMPFEDNTFDGVRFL---EVVCHAPDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred cceehhhhh-cCCCCccccCcEEEE---eecccCCcHHHHHHHHhcccCCCceEEeH
Confidence 1221 22344 899975431 11122256788999999999999999984
No 391
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=94.33 E-value=0.066 Score=49.55 Aligned_cols=41 Identities=10% Similarity=0.175 Sum_probs=34.3
Q ss_pred eEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc
Q 006834 225 TAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER 266 (629)
Q Consensus 225 ~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er 266 (629)
++||+|||.|.++..+++.+... .++++|.++.+.+.++++
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~-~v~~~E~~~~~~~~l~~~ 41 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEG-RVIAFEPLPDAYEILEEN 41 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCC-EEEEEecCHHHHHHHHHH
Confidence 48999999999999999887542 566779999999988764
No 392
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=94.13 E-value=0.21 Score=49.70 Aligned_cols=105 Identities=13% Similarity=0.036 Sum_probs=58.3
Q ss_pred CccCCCCCeEEEeCCCCchHHHHHHHc-CC--cEeEEEeecC-------cHHHHHHHHHcC-CCeEEEEecCCCCC----
Q 006834 217 PLTGGNIRTAVDTGCGVASWGAYLLKR-DI--LTMSFARRDT-------HEAQVQFALERG-VPAMIGVISSKRLP---- 281 (629)
Q Consensus 217 ~~~~g~~~~VLDIGCGtG~~a~~La~~-g~--~~v~i~gvDi-------S~~~i~~A~erg-~~~~~~v~d~~~Lp---- 281 (629)
..+++. +|+|+=-|.|.|++.+... +. .+.++.+.|. .+.+-..+++.. .+....-.....++
T Consensus 45 Glkpg~--tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~ 122 (238)
T COG4798 45 GLKPGA--TVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQK 122 (238)
T ss_pred ccCCCC--EEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCc
Confidence 445555 9999999999999998874 22 2445544333 122222222221 11111111111122
Q ss_pred ---CCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 282 ---YPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 282 ---~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
.+..++|.++....+ | ......+..++++.|||||.+++..+
T Consensus 123 ~d~~~~~~~yhdmh~k~i-~-~~~A~~vna~vf~~LKPGGv~~V~dH 167 (238)
T COG4798 123 LDLVPTAQNYHDMHNKNI-H-PATAAKVNAAVFKALKPGGVYLVEDH 167 (238)
T ss_pred ccccccchhhhhhhcccc-C-cchHHHHHHHHHHhcCCCcEEEEEec
Confidence 123344444443333 3 22356799999999999999999864
No 393
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=94.12 E-value=0.05 Score=55.41 Aligned_cols=120 Identities=19% Similarity=0.225 Sum_probs=75.5
Q ss_pred eEEEeecccchhHHhhhhCCCe-EEEEecCCCCCCCchHHH----Hhhcc----cceec-cccccCCCCC-cccce-eec
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPV-WVMNVVPFHSNPDTLGAI----YERGL----IGTYQ-DWCEAFSTYP-RTYDL-IHA 548 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v-~~mnv~~~~~~~~~l~~~----~ergl----i~~~~-~~~e~f~~yp-~t~Dl-~H~ 548 (629)
-+|||.-.|+|=+|..-.+++- -|..| ..|. |-|+.+ +-|+| |-+++ |--|...+++ .+||. ||=
T Consensus 136 ~rVLDtC~GLGYtAi~a~~rGA~~Vitv-Ekdp--~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHD 212 (287)
T COG2521 136 ERVLDTCTGLGYTAIEALERGAIHVITV-EKDP--NVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHD 212 (287)
T ss_pred CEeeeeccCccHHHHHHHHcCCcEEEEE-eeCC--CeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEeeC
Confidence 4699999999999998888765 22222 2221 222222 23444 45555 4447778899 78995 786
Q ss_pred cccccccCCCcCHHHHHHHHhhcccCCcEEEEE--------eCHHHHHHHHHHHhcCCCeEEEe
Q 006834 549 SGVFSIYQDRCDITNILLEMDRILRPEGTVIFR--------DTVEMLVKIRSITEGMRWKSQIM 604 (629)
Q Consensus 549 ~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~--------d~~~~~~~~~~~~~~l~w~~~~~ 604 (629)
--=||... .==-+.+-.|+.|||||||.+.=- --.+....|.+.+.+.-....-.
T Consensus 213 PPRfS~Ag-eLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~ 275 (287)
T COG2521 213 PPRFSLAG-ELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKK 275 (287)
T ss_pred CCccchhh-hHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeee
Confidence 55566433 111256889999999999998652 11245566777777777764433
No 394
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.90 E-value=0.13 Score=55.11 Aligned_cols=113 Identities=19% Similarity=0.116 Sum_probs=62.5
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHH--HcCC-------CeEEEEecCCC
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFAL--ERGV-------PAMIGVISSKR 279 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~--erg~-------~~~~~v~d~~~ 279 (629)
.+.+....+.. .+.+|||+|.|.|.-+..+..-.++--+.+-++.|+..-+... ++++ +..-++ ..+
T Consensus 102 L~~L~~~~~df--apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt--~dR 177 (484)
T COG5459 102 LDELQKRVPDF--APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVT--EDR 177 (484)
T ss_pred HHHHHHhCCCc--CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccc--hhc
Confidence 33444444332 3447999999999754444333332222233466655443332 1111 011122 234
Q ss_pred CCCC-CCCeeEEEecCcccccccC--HHHHHHHHHhcccCCcEEEEEeC
Q 006834 280 LPYP-ARAFDMAHCSGCLIPWYMY--DGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 280 Lp~p-d~sFDlV~~s~~L~h~~~d--~~~~L~el~RvLKPGG~liis~P 325 (629)
++++ ...|++|+...-|.|.... ....++.+-.++.|||.|+|..+
T Consensus 178 l~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivEr 226 (484)
T COG5459 178 LSLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVER 226 (484)
T ss_pred cCCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeC
Confidence 5544 4567887776655554422 23488889999999999999865
No 395
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=93.76 E-value=0.29 Score=51.92 Aligned_cols=96 Identities=18% Similarity=0.199 Sum_probs=49.8
Q ss_pred chHHHHHHHHhhcCccCCC---CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc---C----CCeEEE
Q 006834 204 GADAYIDNINELIPLTGGN---IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER---G----VPAMIG 273 (629)
Q Consensus 204 ga~~~i~~I~~lL~~~~g~---~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er---g----~~~~~~ 273 (629)
++-.|+..|.++|...... ..++||||+|....-..|..+- ....+++.|+++..++.|++. + ..+.+.
T Consensus 81 ~R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~-~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~ 159 (299)
T PF05971_consen 81 NRLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKL-YGWSFVATDIDPKSLESARENVERNPNLESRIELR 159 (299)
T ss_dssp HHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHH-H--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEE
T ss_pred hhHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhh-cCCeEEEecCCHHHHHHHHHHHHhccccccceEEE
Confidence 3456788888887653321 3579999999875544444331 234678889999999999863 3 134454
Q ss_pred EecCC-C----CCCCCCCeeEEEecCcccccc
Q 006834 274 VISSK-R----LPYPARAFDMAHCSGCLIPWY 300 (629)
Q Consensus 274 v~d~~-~----Lp~pd~sFDlV~~s~~L~h~~ 300 (629)
..... . +..+++.||+..|+.-++.-.
T Consensus 160 ~~~~~~~i~~~i~~~~e~~dftmCNPPFy~s~ 191 (299)
T PF05971_consen 160 KQKNPDNIFDGIIQPNERFDFTMCNPPFYSSQ 191 (299)
T ss_dssp E--ST-SSTTTSTT--S-EEEEEE-----SS-
T ss_pred EcCCccccchhhhcccceeeEEecCCccccCh
Confidence 33221 1 122356899999999774433
No 396
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=93.76 E-value=0.038 Score=55.71 Aligned_cols=97 Identities=19% Similarity=0.323 Sum_probs=50.5
Q ss_pred HHHhhcccCCCCeeEEEeecccchhHHhhhhCC--Ce-EEEEecCCCCCCCchHHHHhh----cc--cceeccccccCCC
Q 006834 468 YKKIDGLFHKGRYRNVMDMNAYLGGFAAAMSKY--PV-WVMNVVPFHSNPDTLGAIYER----GL--IGTYQDWCEAFST 538 (629)
Q Consensus 468 y~~~~~~~~~~~~R~vlD~~~g~Ggfaa~l~~~--~v-~~mnv~~~~~~~~~l~~~~er----gl--i~~~~~~~e~f~~ 538 (629)
+...+. +.+|. .|||+|||+|=++|-|... ++ .|..| +..+.....+.++ |+ +.+.+ ......
T Consensus 64 ~l~~L~-l~pg~--~VLeIGtGsGY~aAlla~lvg~~g~Vv~v---E~~~~l~~~A~~~l~~~~~~nv~~~~--gdg~~g 135 (209)
T PF01135_consen 64 MLEALD-LKPGD--RVLEIGTGSGYQAALLAHLVGPVGRVVSV---ERDPELAERARRNLARLGIDNVEVVV--GDGSEG 135 (209)
T ss_dssp HHHHTT-C-TT---EEEEES-TTSHHHHHHHHHHSTTEEEEEE---ESBHHHHHHHHHHHHHHTTHSEEEEE--S-GGGT
T ss_pred HHHHHh-cCCCC--EEEEecCCCcHHHHHHHHhcCccceEEEE---CccHHHHHHHHHHHHHhccCceeEEE--cchhhc
Confidence 333343 67776 5999999999888877643 22 23332 2222233332222 33 33343 123445
Q ss_pred CC--cccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006834 539 YP--RTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 539 yp--~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
+| ..||.||+.+ ..+.+-.++-+-|||||.+|+-
T Consensus 136 ~~~~apfD~I~v~~---------a~~~ip~~l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 136 WPEEAPFDRIIVTA---------AVPEIPEALLEQLKPGGRLVAP 171 (209)
T ss_dssp TGGG-SEEEEEESS---------BBSS--HHHHHTEEEEEEEEEE
T ss_pred cccCCCcCEEEEee---------ccchHHHHHHHhcCCCcEEEEE
Confidence 55 5799999832 2233334455569999999984
No 397
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=93.72 E-value=0.14 Score=52.12 Aligned_cols=142 Identities=15% Similarity=0.215 Sum_probs=84.8
Q ss_pred HHHHHhhcccCCCCeeEEEeecccchhHHhhhhC----CC-eEEEEecCCCCCCCchHHHHhhcc---cceec--ccccc
Q 006834 466 TYYKKIDGLFHKGRYRNVMDMNAYLGGFAAAMSK----YP-VWVMNVVPFHSNPDTLGAIYERGL---IGTYQ--DWCEA 535 (629)
Q Consensus 466 ~~y~~~~~~~~~~~~R~vlD~~~g~Ggfaa~l~~----~~-v~~mnv~~~~~~~~~l~~~~ergl---i~~~~--~~~e~ 535 (629)
..+..++- ....-++||.+|.+.|=-|..|+. .+ +++.-+-|.-.. ...+...+-|+ |-.+. |+-+.
T Consensus 48 g~~L~~L~--~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~-~A~~n~~~ag~~~~i~~~~~gdal~~ 124 (219)
T COG4122 48 GALLRLLA--RLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAE-IARENLAEAGVDDRIELLLGGDALDV 124 (219)
T ss_pred HHHHHHHH--HhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHH-HHHHHHHHcCCcceEEEEecCcHHHH
Confidence 34444442 233566799999999866666643 23 333322222221 23334445565 33444 77777
Q ss_pred CCC-CCcccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEE---------eC-----HHHHHHHHHHHhcCCCe
Q 006834 536 FST-YPRTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFR---------DT-----VEMLVKIRSITEGMRWK 600 (629)
Q Consensus 536 f~~-yp~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~---------d~-----~~~~~~~~~~~~~l~w~ 600 (629)
++. ...+||+|=.+. +.-+-+..|-+.-++|||||.+|+- ++ .....+++.....+.++
T Consensus 125 l~~~~~~~fDliFIDa------dK~~yp~~le~~~~lLr~GGliv~DNvl~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (219)
T COG4122 125 LSRLLDGSFDLVFIDA------DKADYPEYLERALPLLRPGGLIVADNVLFGGRVADPSIRDARTQVRGVRDFNDYLLED 198 (219)
T ss_pred HHhccCCCccEEEEeC------ChhhCHHHHHHHHHHhCCCcEEEEeecccCCccCCccchhHHHHHHHHHHHHHHHhhC
Confidence 774 779999976521 4455677899999999999999884 11 23444556665555554
Q ss_pred ----EEEeecCCCCCCCceEEEEEec
Q 006834 601 ----SQIMDHESGPFNPEKILFAAKT 622 (629)
Q Consensus 601 ----~~~~~~e~~~~~~e~~l~~~K~ 622 (629)
..++ | ..+.++++.|.
T Consensus 199 ~~~~t~~l-----P-~gDGl~v~~k~ 218 (219)
T COG4122 199 PRYDTVLL-----P-LGDGLLLSRKR 218 (219)
T ss_pred cCceeEEE-----e-cCCceEEEeec
Confidence 3333 2 23789999885
No 398
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=93.50 E-value=0.12 Score=51.65 Aligned_cols=128 Identities=15% Similarity=0.214 Sum_probs=70.8
Q ss_pred chhhHHHHHHHHHHHH-HhhcccCCCCeeEEEeecccch----hHHhhhhC--C--CeEEEEecCCCCCCCchHHHHhhc
Q 006834 454 LREDNELWKDRMTYYK-KIDGLFHKGRYRNVMDMNAYLG----GFAAAMSK--Y--PVWVMNVVPFHSNPDTLGAIYERG 524 (629)
Q Consensus 454 f~~d~~~w~~~v~~y~-~~~~~~~~~~~R~vlD~~~g~G----gfaa~l~~--~--~v~~mnv~~~~~~~~~l~~~~erg 524 (629)
|--|...|..-.+... .++.....++.=.|..+||++| +.|-.|.+ . .-|-+.|..+|-+...|+.+ .+|
T Consensus 5 FFRd~~~f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~A-r~G 83 (196)
T PF01739_consen 5 FFRDPEQFEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKA-RAG 83 (196)
T ss_dssp TTTTTTHHHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHH-HHT
T ss_pred ccCCHHHHHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHH-HhC
Confidence 4555566665444333 2222223345557999999999 55555555 1 22567888888886666654 455
Q ss_pred ccc------------------------------------eeccccccCCCCCcccceeeccccccccCCCcCHHHHHHHH
Q 006834 525 LIG------------------------------------TYQDWCEAFSTYPRTYDLIHASGVFSIYQDRCDITNILLEM 568 (629)
Q Consensus 525 li~------------------------------------~~~~~~e~f~~yp~t~Dl~H~~~~fs~~~~~c~~~~~l~e~ 568 (629)
..+ ..|+.++ ....+.-||+|=|-.|+-... .-....++--+
T Consensus 84 ~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~CRNVlIYF~-~~~~~~vl~~l 161 (196)
T PF01739_consen 84 IYPERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLD-PDPPFGRFDLIFCRNVLIYFD-PETQQRVLRRL 161 (196)
T ss_dssp EEEGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT--S------EEEEEE-SSGGGS--HHHHHHHHHHH
T ss_pred CCCHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCC-CCcccCCccEEEecCEEEEeC-HHHHHHHHHHH
Confidence 522 2344444 233448899999999877443 33457799999
Q ss_pred hhcccCCcEEEEEeCH
Q 006834 569 DRILRPEGTVIFRDTV 584 (629)
Q Consensus 569 dRiLrPgG~~i~~d~~ 584 (629)
-+.|+|||++++....
T Consensus 162 ~~~L~pgG~L~lG~sE 177 (196)
T PF01739_consen 162 HRSLKPGGYLFLGHSE 177 (196)
T ss_dssp GGGEEEEEEEEE-TT-
T ss_pred HHHcCCCCEEEEecCc
Confidence 9999999999997554
No 399
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=93.48 E-value=0.4 Score=51.77 Aligned_cols=93 Identities=19% Similarity=0.145 Sum_probs=65.0
Q ss_pred CCeEEEeCCC-CchHHHHHHH-cCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCCCeeEEEecCcccccc
Q 006834 223 IRTAVDTGCG-VASWGAYLLK-RDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCSGCLIPWY 300 (629)
Q Consensus 223 ~~~VLDIGCG-tG~~a~~La~-~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~ 300 (629)
+.+|+=+|+| .|.++..+++ .+.. ++++|.+++-.+.|++-|....+...+.....--.+.||+|+..-.
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~ga~---Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~----- 238 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMGAE---VIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG----- 238 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCe---EEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-----
Confidence 3378888776 5688888887 5654 4555999999999999986654442222222211234999996442
Q ss_pred cCHHHHHHHHHhcccCCcEEEEEeCC
Q 006834 301 MYDGLYLLEVDRVLRPGGYWILSGPP 326 (629)
Q Consensus 301 ~d~~~~L~el~RvLKPGG~liis~P~ 326 (629)
...+....+.||+||.+++.+-+
T Consensus 239 ---~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 239 ---PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred ---hhhHHHHHHHHhcCCEEEEECCC
Confidence 34578889999999999999743
No 400
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=93.42 E-value=0.25 Score=52.65 Aligned_cols=129 Identities=13% Similarity=0.163 Sum_probs=74.9
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHh----hcc--cceec-cccccCCCCCcccceeecccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYE----RGL--IGTYQ-DWCEAFSTYPRTYDLIHASGVFS 553 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----rgl--i~~~~-~~~e~f~~yp~t~Dl~H~~~~fs 553 (629)
..|||+|||+|.|+..|++++ ..|+.+|.++.++..+.+ .|+ +-.++ |..+-.......||+|-.+
T Consensus 175 ~~VLDl~cG~G~~sl~la~~~---~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d---- 247 (315)
T PRK03522 175 RSMWDLFCGVGGFGLHCATPG---MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN---- 247 (315)
T ss_pred CEEEEccCCCCHHHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC----
Confidence 469999999999999999875 367777777677766543 344 22222 2111111122579988764
Q ss_pred ccCCCcCHHHHHHHHhhcccCCcEEEEEeCHHH-HHHHHHHHhcCCCeEE---EeecCCCCCCCceEEEEEe
Q 006834 554 IYQDRCDITNILLEMDRILRPEGTVIFRDTVEM-LVKIRSITEGMRWKSQ---IMDHESGPFNPEKILFAAK 621 (629)
Q Consensus 554 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~-~~~~~~~~~~l~w~~~---~~~~e~~~~~~e~~l~~~K 621 (629)
..|..+...+.++=.-++|++.++++-+... ...++.+ . -|++. .+|.=.....=|-|.+.+|
T Consensus 248 --PPr~G~~~~~~~~l~~~~~~~ivyvsc~p~t~~rd~~~l-~--~y~~~~~~~~DmFP~T~HvE~v~~l~r 314 (315)
T PRK03522 248 --PPRRGIGKELCDYLSQMAPRFILYSSCNAQTMAKDLAHL-P--GYRIERVQLFDMFPHTAHYEVLTLLVR 314 (315)
T ss_pred --CCCCCccHHHHHHHHHcCCCeEEEEECCcccchhHHhhc-c--CcEEEEEEEeccCCCCCeEEEEEEEEc
Confidence 2344444444444444789999999855443 3444444 3 46554 3443333333466655544
No 401
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=93.35 E-value=0.079 Score=51.59 Aligned_cols=99 Identities=24% Similarity=0.343 Sum_probs=52.2
Q ss_pred CeeEEEeecccch--hHHhhhh--CCCeEEEEecCCCCCCCchHHHHhhcc------cc-eeccccccC--CCC-Ccccc
Q 006834 479 RYRNVMDMNAYLG--GFAAAMS--KYPVWVMNVVPFHSNPDTLGAIYERGL------IG-TYQDWCEAF--STY-PRTYD 544 (629)
Q Consensus 479 ~~R~vlD~~~g~G--gfaa~l~--~~~v~~mnv~~~~~~~~~l~~~~ergl------i~-~~~~~~e~f--~~y-p~t~D 544 (629)
+-++||++|||.| |.+++.. ...|++.=.-+ -...+..+.++.. +- ...+|.+.. ... ++.||
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~---~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE---VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S----HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred CCceEEEECCccchhHHHHHhccCCceEEEeccch---hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 3457999999998 5555544 22333322211 1234445555432 22 334898744 112 36899
Q ss_pred eeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 545 LIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 545 l~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
+|-+.-++=. .-..+.++.=+.++|.|+|.+++..+
T Consensus 122 ~IlasDv~Y~---~~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 122 VILASDVLYD---EELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp EEEEES--S----GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred EEEEecccch---HHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 9998444322 12346688888999999999888643
No 402
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=93.16 E-value=1.1 Score=45.19 Aligned_cols=115 Identities=16% Similarity=0.042 Sum_probs=71.4
Q ss_pred EEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C--CCeEEEEecCCCCCCCC-CCeeEEEecCcccc
Q 006834 226 AVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G--VPAMIGVISSKRLPYPA-RAFDMAHCSGCLIP 298 (629)
Q Consensus 226 VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g--~~~~~~v~d~~~Lp~pd-~sFDlV~~s~~L~h 298 (629)
|.||||--|.+..+|++++... .+.++|+++.-++.|++. + ..+.+..+|... +++. +..|.|+.+.+=-.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~-~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~-~l~~~e~~d~ivIAGMGG~ 78 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAP-KAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLE-VLKPGEDVDTIVIAGMGGE 78 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEE-EEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGG-G--GGG---EEEEEEE-HH
T ss_pred CceeccchhHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCccc-ccCCCCCCCEEEEecCCHH
Confidence 6899999999999999998643 566779999999999864 3 346777777543 2233 33788776443211
Q ss_pred cccCHHHHHHHHHhcccCCcEEEEEeCCCCccccccCccCcchhhhhHHHHHHHHHHHhcceeecc
Q 006834 299 WYMYDGLYLLEVDRVLRPGGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIEDIAKRLCWKKLIE 364 (629)
Q Consensus 299 ~~~d~~~~L~el~RvLKPGG~liis~P~~~w~~~~~~w~~~~e~l~~~~~~ie~l~~~l~w~~v~~ 364 (629)
-...+|.+....++..-.|++. |.. ....++......+|..+.+
T Consensus 79 ---lI~~ILe~~~~~~~~~~~lILq-P~~------------------~~~~LR~~L~~~gf~I~~E 122 (205)
T PF04816_consen 79 ---LIIEILEAGPEKLSSAKRLILQ-PNT------------------HAYELRRWLYENGFEIIDE 122 (205)
T ss_dssp ---HHHHHHHHTGGGGTT--EEEEE-ESS-------------------HHHHHHHHHHTTEEEEEE
T ss_pred ---HHHHHHHhhHHHhccCCeEEEe-CCC------------------ChHHHHHHHHHCCCEEEEe
Confidence 1245677777777766677776 211 1345777778888866554
No 403
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=93.00 E-value=0.53 Score=48.67 Aligned_cols=128 Identities=22% Similarity=0.200 Sum_probs=74.0
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCCeEEEEecCCCCCCCCCCeeEEEecCcccc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GVPAMIGVISSKRLPYPARAFDMAHCSGCLIP 298 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h 298 (629)
+.+|+|||||.=-++.......... .++++|++..++++...- +.+..+.+.|...-+ +....|+++..-++ |
T Consensus 106 p~sVlDigCGlNPlalp~~~~~~~a-~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~-~~~~~DlaLllK~l-p 182 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEAPGA-TYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP-PKEPADLALLLKTL-P 182 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSSTT--EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH-TTSEESEEEEET-H-H
T ss_pred CchhhhhhccCCceehhhcccCCCc-EEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccC-CCCCcchhhHHHHH-H
Confidence 5699999999999888777654433 678889999999988753 667778777765543 45679999986666 4
Q ss_pred cccCH-HHHHHHHHhcccCCcEEEEEeCCCCccccccCccCcchhhhhHHHHHHHHHHHhcce
Q 006834 299 WYMYD-GLYLLEVDRVLRPGGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIEDIAKRLCWK 360 (629)
Q Consensus 299 ~~~d~-~~~L~el~RvLKPGG~liis~P~~~w~~~~~~w~~~~e~l~~~~~~ie~l~~~l~w~ 360 (629)
..+.. .....++...++ .=.++++.|-..--. +..-........++..+..-.|.
T Consensus 183 ~le~q~~g~g~~ll~~~~-~~~~vVSfPtrSL~g------R~~gm~~~y~~~fe~~~~~~~~~ 238 (251)
T PF07091_consen 183 CLERQRRGAGLELLDALR-SPHVVVSFPTRSLGG------RNKGMEQTYSAWFEALAAERGWI 238 (251)
T ss_dssp HHHHHSTTHHHHHHHHSC-ESEEEEEEES-------------TTHHHCHHHHHHHHCCTTCEE
T ss_pred HHHHHhcchHHHHHHHhC-CCeEEEecccccccc------CccccccCHHHHHHHhcccCCce
Confidence 33221 122223333332 235566655332222 22223334456677777776665
No 404
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=92.71 E-value=0.32 Score=48.15 Aligned_cols=93 Identities=16% Similarity=0.063 Sum_probs=66.4
Q ss_pred eEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C-CCeEEEEecCCCCCCCCCCeeEEEecCccccc
Q 006834 225 TAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G-VPAMIGVISSKRLPYPARAFDMAHCSGCLIPW 299 (629)
Q Consensus 225 ~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g-~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~ 299 (629)
++.|+|.|+|.++...++..-.+ .+++.++.-.+.|.++ | .+..++.+|+....| ...|+|+|-..=.-+
T Consensus 35 ~~~DLGaGsGiLs~~Aa~~A~rV---iAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlDTaL 109 (252)
T COG4076 35 TFADLGAGSGILSVVAAHAAERV---IAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLDTAL 109 (252)
T ss_pred ceeeccCCcchHHHHHHhhhceE---EEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhhHHh
Confidence 79999999999877776664334 4559999988888887 2 467788888888777 568999983321111
Q ss_pred -ccCHHHHHHHHHhcccCCcEEEE
Q 006834 300 -YMYDGLYLLEVDRVLRPGGYWIL 322 (629)
Q Consensus 300 -~~d~~~~L~el~RvLKPGG~lii 322 (629)
.+.....+..+...||-.+.++=
T Consensus 110 i~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 110 IEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred hcccccHHHHHHHHHhhcCCcccc
Confidence 11234577777788888887764
No 405
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=92.67 E-value=0.14 Score=57.45 Aligned_cols=68 Identities=21% Similarity=0.205 Sum_probs=50.5
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C-CCeEEEEecCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G-VPAMIGVISSK 278 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g-~~~~~~v~d~~ 278 (629)
+.+...+.+.+....++ .+||+-||||.++..+++.... +.|+++++.++..|+++ | .++.|.++.++
T Consensus 369 evLys~i~e~~~l~~~k--~llDv~CGTG~iglala~~~~~---ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE 441 (534)
T KOG2187|consen 369 EVLYSTIGEWAGLPADK--TLLDVCCGTGTIGLALARGVKR---VIGVEISPDAVEDAEKNAQINGISNATFIVGQAE 441 (534)
T ss_pred HHHHHHHHHHhCCCCCc--EEEEEeecCCceehhhhccccc---eeeeecChhhcchhhhcchhcCccceeeeecchh
Confidence 44455566666665554 8999999999999999987554 45669999999999865 3 35788877443
No 406
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=92.62 E-value=0.17 Score=50.70 Aligned_cols=98 Identities=18% Similarity=0.138 Sum_probs=55.1
Q ss_pred eEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc-------C-----CCeEEEEecCCC-CC--CCCCC-ee
Q 006834 225 TAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER-------G-----VPAMIGVISSKR-LP--YPARA-FD 288 (629)
Q Consensus 225 ~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er-------g-----~~~~~~v~d~~~-Lp--~pd~s-FD 288 (629)
.+.|||||-|.+...|+...++. -|.|.++-...-+..++| . .++.+...++.. +| |..++ +-
T Consensus 63 efaDIGCGyGGLlv~Lsp~fPdt-LiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLsk 141 (249)
T KOG3115|consen 63 EFADIGCGYGGLLMKLAPKFPDT-LILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLSK 141 (249)
T ss_pred eEEeeccCccchhhhccccCccc-eeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccccc
Confidence 68999999999999999998765 356767655544444432 1 122222222211 12 11111 12
Q ss_pred EEEecCcccccccC-------HHHHHHHHHhcccCCcEEEEEe
Q 006834 289 MAHCSGCLIPWYMY-------DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 289 lV~~s~~L~h~~~d-------~~~~L~el~RvLKPGG~liis~ 324 (629)
+.++..-- |+... ...++.+..=+|++||.++..+
T Consensus 142 mff~fpdp-Hfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 142 MFFLFPDP-HFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred ceeecCCh-hHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 22222111 11111 1257899999999999998874
No 407
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=92.53 E-value=0.14 Score=53.79 Aligned_cols=124 Identities=23% Similarity=0.337 Sum_probs=79.1
Q ss_pred CCeeEEEeecccchhHHh-hhhCCC-----eEEEEecCCCCCCCchHHHHhhcccce---eccccccCCCCC---cccce
Q 006834 478 GRYRNVMDMNAYLGGFAA-AMSKYP-----VWVMNVVPFHSNPDTLGAIYERGLIGT---YQDWCEAFSTYP---RTYDL 545 (629)
Q Consensus 478 ~~~R~vlD~~~g~Ggfaa-~l~~~~-----v~~mnv~~~~~~~~~l~~~~ergli~~---~~~~~e~f~~yp---~t~Dl 545 (629)
++--.||||-||.|-.-- +|.+.+ |..--..|..-. .-...|.+|||=.+ .+.=|-...+|- -.++|
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~-~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l 212 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVE-KGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTL 212 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHH-HHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCE
Confidence 554569999999874311 112222 222222332222 45678999999443 222222222233 45789
Q ss_pred eeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCH--HHHHHHHHHHhc----CCCeEE
Q 006834 546 IHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTV--EMLVKIRSITEG----MRWKSQ 602 (629)
Q Consensus 546 ~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~--~~~~~~~~~~~~----l~w~~~ 602 (629)
+-.+|||.+..+.-.+..-|.=+-++|.|||++|.|-.. -.++.|...+.+ --|-.+
T Consensus 213 ~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMR 275 (311)
T PF12147_consen 213 AIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMR 275 (311)
T ss_pred EEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEE
Confidence 999999999998877788889999999999999999643 245666666655 357766
No 408
>PRK00536 speE spermidine synthase; Provisional
Probab=92.45 E-value=0.33 Score=50.69 Aligned_cols=93 Identities=16% Similarity=0.177 Sum_probs=61.2
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHh------hcc----cceeccccccCCCCCcccc
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYE------RGL----IGTYQDWCEAFSTYPRTYD 544 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e------rgl----i~~~~~~~e~f~~yp~t~D 544 (629)
+..+.-++||=+|.|-||.++.+.+.+- +|+-++-.+..+.+..+ .++ +.++ .| -.....++||
T Consensus 68 ~~h~~pk~VLIiGGGDGg~~REvLkh~~---~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~-~~--~~~~~~~~fD 141 (262)
T PRK00536 68 CTKKELKEVLIVDGFDLELAHQLFKYDT---HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHA-KQ--LLDLDIKKYD 141 (262)
T ss_pred hhCCCCCeEEEEcCCchHHHHHHHCcCC---eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEe-eh--hhhccCCcCC
Confidence 3456789999999999999999999873 44434333234433333 122 1111 01 1112247899
Q ss_pred eeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006834 545 LIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 545 l~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
+|=.+.+|+ +.....+.|.|+|||.++..
T Consensus 142 VIIvDs~~~--------~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 142 LIICLQEPD--------IHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred EEEEcCCCC--------hHHHHHHHHhcCCCcEEEEC
Confidence 999988776 45667789999999999995
No 409
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=92.25 E-value=0.52 Score=44.66 Aligned_cols=97 Identities=22% Similarity=0.155 Sum_probs=59.3
Q ss_pred EEeecCcHHHHHHHHHc----C--CCeEEEEecCCCCC--CCCCCeeEEEecCcccccccC-----H---HHHHHHHHhc
Q 006834 250 FARRDTHEAQVQFALER----G--VPAMIGVISSKRLP--YPARAFDMAHCSGCLIPWYMY-----D---GLYLLEVDRV 313 (629)
Q Consensus 250 i~gvDiS~~~i~~A~er----g--~~~~~~v~d~~~Lp--~pd~sFDlV~~s~~L~h~~~d-----~---~~~L~el~Rv 313 (629)
+.+.|+-+++++.++++ + .++.+...+=+.+. .+.+.+|+|+.+....+-.+. + -.++..+.++
T Consensus 2 VyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~l 81 (140)
T PF06962_consen 2 VYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALEL 81 (140)
T ss_dssp EEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHHH
T ss_pred EEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHHh
Confidence 34569999999999876 2 24677665544554 233589999988776554321 1 2589999999
Q ss_pred ccCCcEEEEEeCCCCccccccCccCcchhhhhHHHHHHHHHHHhc
Q 006834 314 LRPGGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIEDIAKRLC 358 (629)
Q Consensus 314 LKPGG~liis~P~~~w~~~~~~w~~~~e~l~~~~~~ie~l~~~l~ 358 (629)
|+|||.++++.-+ .+. .-.+|.+.+++.++.+.
T Consensus 82 L~~gG~i~iv~Y~----GH~--------gG~eE~~av~~~~~~L~ 114 (140)
T PF06962_consen 82 LKPGGIITIVVYP----GHP--------GGKEESEAVEEFLASLD 114 (140)
T ss_dssp EEEEEEEEEEE------STC--------HHHHHHHHHHHHHHTS-
T ss_pred hccCCEEEEEEeC----CCC--------CCHHHHHHHHHHHHhCC
Confidence 9999999998521 111 12345666777766654
No 410
>PLN02823 spermine synthase
Probab=92.14 E-value=1 Score=48.69 Aligned_cols=100 Identities=12% Similarity=0.106 Sum_probs=57.9
Q ss_pred CeeEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhhc-cc---------ceec-cccccCCCCCccccee
Q 006834 479 RYRNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYERG-LI---------GTYQ-DWCEAFSTYPRTYDLI 546 (629)
Q Consensus 479 ~~R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~erg-li---------~~~~-~~~e~f~~yp~t~Dl~ 546 (629)
..++||-+|+|.|+.++.+.+. ++--+-++..|. ..++++.+.- +. -++. |=-+-+..-++.||+|
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~--~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvI 180 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQ--EVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVI 180 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCH--HHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEE
Confidence 5678999999999999988775 453344455544 4666665431 11 1111 1001111224689998
Q ss_pred eccccccccC-CCcC---HHHHHH-HHhhcccCCcEEEEE
Q 006834 547 HASGVFSIYQ-DRCD---ITNILL-EMDRILRPEGTVIFR 581 (629)
Q Consensus 547 H~~~~fs~~~-~~c~---~~~~l~-e~dRiLrPgG~~i~~ 581 (629)
=++ ++.-.. ..+. -..++. .+.|.|+|||.+++.
T Consensus 181 i~D-~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 181 IGD-LADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred Eec-CCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 876 332111 1121 123455 689999999999874
No 411
>PLN02672 methionine S-methyltransferase
Probab=92.12 E-value=0.27 Score=60.47 Aligned_cols=118 Identities=16% Similarity=0.100 Sum_probs=69.1
Q ss_pred EEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHH---Hhh----------------cc---cceec-cccccCC
Q 006834 482 NVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAI---YER----------------GL---IGTYQ-DWCEAFS 537 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~---~er----------------gl---i~~~~-~~~e~f~ 537 (629)
.|||+|||.|-.+-+|+++ +- -.|+.+|-++..+.++ .++ ++ +-+++ ||.+.+.
T Consensus 121 ~VLDlG~GSG~Iai~La~~~~~--~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 121 TVAELGCGNGWISIAIAEKWLP--SKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred EEEEEecchHHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 5999999999999999765 31 1345555555566555 222 11 33444 6765553
Q ss_pred CCCcccceeeccc--------------------------------ccccc--CCC-cCHHHHHHHHhhcccCCcEEEEEe
Q 006834 538 TYPRTYDLIHASG--------------------------------VFSIY--QDR-CDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 538 ~yp~t~Dl~H~~~--------------------------------~fs~~--~~~-c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
.....||+|-++= |+..+ .+. -.+..|+.+.-++|||||++++--
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 2112588754421 11110 011 012458899999999999999965
Q ss_pred CHHHHHHHH-HHHhcCCCeE
Q 006834 583 TVEMLVKIR-SITEGMRWKS 601 (629)
Q Consensus 583 ~~~~~~~~~-~~~~~l~w~~ 601 (629)
..+.-..|+ +++.+..|+.
T Consensus 279 G~~q~~~v~~~l~~~~gf~~ 298 (1082)
T PLN02672 279 GGRPGQAVCERLFERRGFRI 298 (1082)
T ss_pred CccHHHHHHHHHHHHCCCCe
Confidence 544455666 4666555544
No 412
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=92.03 E-value=0.21 Score=53.68 Aligned_cols=106 Identities=17% Similarity=0.199 Sum_probs=62.3
Q ss_pred HHHHHHhhc---ccCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCC---CCchHHHHhhcc---cceecccccc
Q 006834 465 MTYYKKIDG---LFHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSN---PDTLGAIYERGL---IGTYQDWCEA 535 (629)
Q Consensus 465 v~~y~~~~~---~~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~---~~~l~~~~ergl---i~~~~~~~e~ 535 (629)
...|...+- .+-.+++ |||+|||+|-....=++.+ .-+|..++.+ .-..+++.+-|+ |.+++.--|.
T Consensus 45 t~aYr~~i~~n~~lf~dK~--VlDVGcGtGILS~F~akAG--A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEd 120 (346)
T KOG1499|consen 45 TLAYRNAILQNKHLFKDKT--VLDVGCGTGILSMFAAKAG--ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVED 120 (346)
T ss_pred HHHHHHHHhcchhhcCCCE--EEEcCCCccHHHHHHHHhC--cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEE
Confidence 345665431 3455554 9999999997544434333 1222333333 234566677777 5555544455
Q ss_pred CCCCC-cccceeeccccccccCCCcC-----HHHHHHHHhhcccCCcEEEE
Q 006834 536 FSTYP-RTYDLIHASGVFSIYQDRCD-----ITNILLEMDRILRPEGTVIF 580 (629)
Q Consensus 536 f~~yp-~t~Dl~H~~~~fs~~~~~c~-----~~~~l~e~dRiLrPgG~~i~ 580 (629)
. ..| .-.|+|=+ -|..-|. +..+|.-=||.|.|||.++=
T Consensus 121 i-~LP~eKVDiIvS-----EWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 121 I-ELPVEKVDIIVS-----EWMGYFLLYESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred E-ecCccceeEEee-----hhhhHHHHHhhhhhhhhhhhhhccCCCceEcc
Confidence 4 456 77888765 3333333 23477777999999998763
No 413
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=91.92 E-value=0.41 Score=54.03 Aligned_cols=101 Identities=22% Similarity=0.252 Sum_probs=58.1
Q ss_pred cCCCCeeEEEeecccchhHHhhhhC----CCeEEEEecCCCCCCC---chHHHHhh-cc--cceec-cccccCCCCCccc
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSK----YPVWVMNVVPFHSNPD---TLGAIYER-GL--IGTYQ-DWCEAFSTYPRTY 543 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~----~~v~~mnv~~~~~~~~---~l~~~~er-gl--i~~~~-~~~e~f~~yp~t~ 543 (629)
..++. .||||.|+-||=..+|++ .+..+ ..|.+.. .+.-+.+| |+ +-+.+ |-..--..+|..|
T Consensus 111 ~~pg~--~VLD~CAAPGgKTt~la~~l~~~g~lv----A~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~f 184 (470)
T PRK11933 111 DNAPQ--RVLDMAAAPGSKTTQIAALMNNQGAIV----ANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETF 184 (470)
T ss_pred CCCCC--EEEEeCCCccHHHHHHHHHcCCCCEEE----EEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhc
Confidence 35565 499999999998777755 34433 3333323 34444555 54 22222 2111112457889
Q ss_pred ceee----cccc--ccccCC---CcC---H-------HHHHHHHhhcccCCcEEEEE
Q 006834 544 DLIH----ASGV--FSIYQD---RCD---I-------TNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 544 Dl~H----~~~~--fs~~~~---~c~---~-------~~~l~e~dRiLrPgG~~i~~ 581 (629)
|.|- |+|. |..-.+ +-. + ..||...-+.|||||.+|.+
T Consensus 185 D~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYS 241 (470)
T PRK11933 185 DAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYS 241 (470)
T ss_pred CeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 9988 5544 332110 001 1 23888899999999999986
No 414
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=91.85 E-value=0.88 Score=49.16 Aligned_cols=90 Identities=17% Similarity=0.157 Sum_probs=40.6
Q ss_pred HHHhhcC-ccCCCCCeEEEeCCCCchHHHHHHHcCC---------------cEeEEEeecC-----cHHHHHHHH-----
Q 006834 211 NINELIP-LTGGNIRTAVDTGCGVASWGAYLLKRDI---------------LTMSFARRDT-----HEAQVQFAL----- 264 (629)
Q Consensus 211 ~I~~lL~-~~~g~~~~VLDIGCGtG~~a~~La~~g~---------------~~v~i~gvDi-----S~~~i~~A~----- 264 (629)
.|.+++. ......-+|+|+||..|..+..+.+.-+ ..+.+.-.|+ +.-.-....
T Consensus 4 ai~~~~~~~~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~ 83 (334)
T PF03492_consen 4 AIKELYNSSNNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSL 83 (334)
T ss_dssp HHHHHHHSTTTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHH
T ss_pred HHHHHHhcCCCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhcc
Confidence 3444432 2334456899999999988877665311 1233433343 211111110
Q ss_pred HcCCCeEEE-E-ecCCCCCCCCCCeeEEEecCccccccc
Q 006834 265 ERGVPAMIG-V-ISSKRLPYPARAFDMAHCSGCLIPWYM 301 (629)
Q Consensus 265 erg~~~~~~-v-~d~~~Lp~pd~sFDlV~~s~~L~h~~~ 301 (629)
....++... + +....=-||+++.|+++++.++ ||..
T Consensus 84 ~~~~~~f~~gvpgSFy~rLfP~~Svh~~~Ss~al-HWLS 121 (334)
T PF03492_consen 84 KKFRNYFVSGVPGSFYGRLFPSNSVHFGHSSYAL-HWLS 121 (334)
T ss_dssp HHTTSEEEEEEES-TTS--S-TT-EEEEEEES-T-TB-S
T ss_pred CCCceEEEEecCchhhhccCCCCceEEEEEechh-hhcc
Confidence 112233222 1 1222223789999999999999 6653
No 415
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=91.78 E-value=1.6 Score=49.71 Aligned_cols=120 Identities=19% Similarity=0.172 Sum_probs=81.8
Q ss_pred hHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCC---cEeEEEeecCcHHHHHHHHHc----CCC--eEEEEe
Q 006834 205 ADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDI---LTMSFARRDTHEAQVQFALER----GVP--AMIGVI 275 (629)
Q Consensus 205 a~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~---~~v~i~gvDiS~~~i~~A~er----g~~--~~~~v~ 275 (629)
.+..++.|.+++...+.. +|+|-.||+|.+.....+..- ....++|.|++......|+-+ +++ +.....
T Consensus 171 P~~v~~liv~~l~~~~~~--~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~ 248 (489)
T COG0286 171 PREVSELIVELLDPEPRN--SIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHG 248 (489)
T ss_pred hHHHHHHHHHHcCCCCCC--eecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCcccccccc
Confidence 356677888888764444 899999999988766655321 125789999999999999854 443 455555
Q ss_pred cCCCCCC-----CCCCeeEEEecCccc--ccccC----------------------HHHHHHHHHhcccCCcEEEEEeCC
Q 006834 276 SSKRLPY-----PARAFDMAHCSGCLI--PWYMY----------------------DGLYLLEVDRVLRPGGYWILSGPP 326 (629)
Q Consensus 276 d~~~Lp~-----pd~sFDlV~~s~~L~--h~~~d----------------------~~~~L~el~RvLKPGG~liis~P~ 326 (629)
+...-|. ..+.||.|+++.-+. .|... ...+++.+...|+|||...++.|.
T Consensus 249 dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~ 328 (489)
T COG0286 249 DTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPD 328 (489)
T ss_pred ccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecC
Confidence 5544442 236799999865542 12110 136899999999999977777663
No 416
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=91.67 E-value=0.86 Score=50.13 Aligned_cols=45 Identities=24% Similarity=0.376 Sum_probs=32.9
Q ss_pred CCCCCeeEEEecCcccccccC-HH-------------------------------------HHHHHHHhcccCCcEEEEE
Q 006834 282 YPARAFDMAHCSGCLIPWYMY-DG-------------------------------------LYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 282 ~pd~sFDlV~~s~~L~h~~~d-~~-------------------------------------~~L~el~RvLKPGG~liis 323 (629)
||+++.++++++.++ ||... |. .+|+-=.+-|.|||.++++
T Consensus 158 fP~~Slh~~~Ss~sl-HWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~ 236 (386)
T PLN02668 158 FPARSIDVFHSAFSL-HWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLV 236 (386)
T ss_pred cCCCceEEEEeeccc-eecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEE
Confidence 789999999999999 77643 11 1233334568999999998
Q ss_pred eCCC
Q 006834 324 GPPI 327 (629)
Q Consensus 324 ~P~~ 327 (629)
....
T Consensus 237 ~~Gr 240 (386)
T PLN02668 237 CLGR 240 (386)
T ss_pred EecC
Confidence 7544
No 417
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=91.31 E-value=0.3 Score=44.11 Aligned_cols=28 Identities=21% Similarity=0.214 Sum_probs=24.4
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEE
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSF 250 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i 250 (629)
....+|+|||+|.+.--|.+.|..+.++
T Consensus 59 ~~~FVDlGCGNGLLV~IL~~EGy~G~Gi 86 (112)
T PF07757_consen 59 FQGFVDLGCGNGLLVYILNSEGYPGWGI 86 (112)
T ss_pred CCceEEccCCchHHHHHHHhCCCCcccc
Confidence 3469999999999999999999887776
No 418
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=91.21 E-value=0.37 Score=48.38 Aligned_cols=134 Identities=16% Similarity=0.252 Sum_probs=80.8
Q ss_pred EEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHH----HHhhccc----ceecccccc-------CCCCCcccce
Q 006834 482 NVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGA----IYERGLI----GTYQDWCEA-------FSTYPRTYDL 545 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~----~~ergli----~~~~~~~e~-------f~~yp~t~Dl 545 (629)
.||.+|+|+|--|++++.. |- +.--|+|...+.+.- +.+.|+. .+.-|.++. -..++.+||.
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~--l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~ 105 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPH--LTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDA 105 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCC--CEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcce
Confidence 7999999999998888765 32 234577766444433 3466762 222233322 2235689998
Q ss_pred eeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeC-----------H----------------HHHHHHHHHHhcCC
Q 006834 546 IHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDT-----------V----------------EMLVKIRSITEGMR 598 (629)
Q Consensus 546 ~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~-----------~----------------~~~~~~~~~~~~l~ 598 (629)
|-|..++-.-. ....+-+|.+..|+|+|||.+++--+ . --++.|..++..-.
T Consensus 106 i~~~N~lHI~p-~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~G 184 (204)
T PF06080_consen 106 IFCINMLHISP-WSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHG 184 (204)
T ss_pred eeehhHHHhcC-HHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCC
Confidence 66533332211 12235699999999999999999411 0 11556777777666
Q ss_pred CeEEEeecCCCCCCCceEEEEEe
Q 006834 599 WKSQIMDHESGPFNPEKILFAAK 621 (629)
Q Consensus 599 w~~~~~~~e~~~~~~e~~l~~~K 621 (629)
+... +.-+-| ...++||.+|
T Consensus 185 L~l~--~~~~MP-ANN~~Lvfrk 204 (204)
T PF06080_consen 185 LELE--EDIDMP-ANNLLLVFRK 204 (204)
T ss_pred CccC--cccccC-CCCeEEEEeC
Confidence 5542 112233 2578888887
No 419
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=91.19 E-value=1.2 Score=46.16 Aligned_cols=109 Identities=21% Similarity=0.216 Sum_probs=67.6
Q ss_pred ccCCCCeeEEEeecccchhHHhhhhC----C-CeEEEEecCCCCCCCchHHHHh---h-cccc-eec---cccccCCCCC
Q 006834 474 LFHKGRYRNVMDMNAYLGGFAAAMSK----Y-PVWVMNVVPFHSNPDTLGAIYE---R-GLIG-TYQ---DWCEAFSTYP 540 (629)
Q Consensus 474 ~~~~~~~R~vlD~~~g~Ggfaa~l~~----~-~v~~mnv~~~~~~~~~l~~~~e---r-gli~-~~~---~~~e~f~~yp 540 (629)
.|.+|.. |||.|.|.|.++++|+. . .|+..-.- +...+.+.+ . ||.- +-+ |.++... +
T Consensus 91 gi~pg~r--VlEAGtGSG~lt~~La~~vg~~G~v~tyE~r-----~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~--~ 161 (256)
T COG2519 91 GISPGSR--VLEAGTGSGALTAYLARAVGPEGHVTTYEIR-----EDFAKTARENLSEFGLGDRVTLKLGDVREGID--E 161 (256)
T ss_pred CCCCCCE--EEEcccCchHHHHHHHHhhCCCceEEEEEec-----HHHHHHHHHHHHHhccccceEEEecccccccc--c
Confidence 4777876 99999999999999983 3 34443332 234444332 2 6633 222 5554333 2
Q ss_pred cccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeC-HHHHHHHHHHHhcCCC
Q 006834 541 RTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDT-VEMLVKIRSITEGMRW 599 (629)
Q Consensus 541 ~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~-~~~~~~~~~~~~~l~w 599 (629)
..||.|-. +--+--.+|--++.+|+|||.+++--+ .+.+.++-..++..+|
T Consensus 162 ~~vDav~L--------Dmp~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~ 213 (256)
T COG2519 162 EDVDAVFL--------DLPDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGF 213 (256)
T ss_pred cccCEEEE--------cCCChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCc
Confidence 37887665 333344589999999999999988543 4445555444555555
No 420
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=91.03 E-value=0.8 Score=50.44 Aligned_cols=108 Identities=18% Similarity=0.233 Sum_probs=70.4
Q ss_pred CCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCC-eEEEEecCCCCC---CCCCCeeEEE
Q 006834 220 GGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GVP-AMIGVISSKRLP---YPARAFDMAH 291 (629)
Q Consensus 220 ~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~-~~~~v~d~~~Lp---~pd~sFDlV~ 291 (629)
+..+.+|||+.+..|.=+.+++..-...-.|.+.|.+..-+....++ |.. ......|...+| ++. +||-|+
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRVL 317 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRVL 317 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-ccceee
Confidence 44455999999999977777666432222467779888877766543 543 444556666555 444 899999
Q ss_pred ----ecC--ccc-----cccc----------CHHHHHHHHHhcccCCcEEEEEeCCCC
Q 006834 292 ----CSG--CLI-----PWYM----------YDGLYLLEVDRVLRPGGYWILSGPPIH 328 (629)
Q Consensus 292 ----~s~--~L~-----h~~~----------d~~~~L~el~RvLKPGG~liis~P~~~ 328 (629)
|+. ++. -+.. -+.++|.....++++||+|+.++..+.
T Consensus 318 LDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~ 375 (460)
T KOG1122|consen 318 LDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSIT 375 (460)
T ss_pred ecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecc
Confidence 444 221 0000 123678889999999999999976543
No 421
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=90.87 E-value=2.6 Score=42.83 Aligned_cols=157 Identities=14% Similarity=0.147 Sum_probs=89.2
Q ss_pred chhhHHHHHHHHHHHHHhhcccCCCCeeEEEeecccchhHHhh--hhCCCeEEEEecCCCCC-CCch-HHHHhhcc--cc
Q 006834 454 LREDNELWKDRMTYYKKIDGLFHKGRYRNVMDMNAYLGGFAAA--MSKYPVWVMNVVPFHSN-PDTL-GAIYERGL--IG 527 (629)
Q Consensus 454 f~~d~~~w~~~v~~y~~~~~~~~~~~~R~vlD~~~g~Ggfaa~--l~~~~v~~mnv~~~~~~-~~~l-~~~~ergl--i~ 527 (629)
..+..+.|.+|+-.-..+.+.+... -.+++|+|+|-|-=|-= +...++- .-++..... .+.| .++.|=|| +.
T Consensus 43 ~~~~~e~~~rHilDSl~~~~~~~~~-~~~~~DIGSGaGfPGipLAI~~p~~~-vtLles~~Kk~~FL~~~~~eL~L~nv~ 120 (215)
T COG0357 43 IRDPEELWQRHILDSLVLLPYLDGK-AKRVLDIGSGAGFPGIPLAIAFPDLK-VTLLESLGKKIAFLREVKKELGLENVE 120 (215)
T ss_pred CCCHHHHHHHHHHHHhhhhhccccc-CCEEEEeCCCCCCchhhHHHhccCCc-EEEEccCchHHHHHHHHHHHhCCCCeE
Confidence 3455789999986655554433321 35699999997733333 3333332 233333222 1222 23445566 45
Q ss_pred eeccccccCCCCCcccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEE---EeCHHHHHHHHHHHhcCCCeEEEe
Q 006834 528 TYQDWCEAFSTYPRTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIF---RDTVEMLVKIRSITEGMRWKSQIM 604 (629)
Q Consensus 528 ~~~~~~e~f~~yp~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~---~d~~~~~~~~~~~~~~l~w~~~~~ 604 (629)
++|.--|.|..=++-||+|=| .+-+++..++-=.-.+|++||.++. .--.+.+..+++....+.+....+
T Consensus 121 i~~~RaE~~~~~~~~~D~vts-------RAva~L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~~~ 193 (215)
T COG0357 121 IVHGRAEEFGQEKKQYDVVTS-------RAVASLNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQVEKV 193 (215)
T ss_pred EehhhHhhcccccccCcEEEe-------ehccchHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcEEEE
Confidence 666444444431111999887 2224555555555799999998753 344567788888888888888755
Q ss_pred ecCCCCC-CCceEEEE
Q 006834 605 DHESGPF-NPEKILFA 619 (629)
Q Consensus 605 ~~e~~~~-~~e~~l~~ 619 (629)
..-.-|. ..++.|+.
T Consensus 194 ~~~~~p~~~~~r~l~i 209 (215)
T COG0357 194 FSLTVPELDGERHLVI 209 (215)
T ss_pred EEeecCCCCCceEEEE
Confidence 4333332 23455554
No 422
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=90.85 E-value=0.37 Score=48.20 Aligned_cols=97 Identities=7% Similarity=0.024 Sum_probs=52.9
Q ss_pred EEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHh----hcc--cceec-cccccCCCCCcccceeeccccccc
Q 006834 482 NVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYE----RGL--IGTYQ-DWCEAFSTYPRTYDLIHASGVFSI 554 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----rgl--i~~~~-~~~e~f~~yp~t~Dl~H~~~~fs~ 554 (629)
+|||++||+|.++..++.+.. -.|+.++..+..+..+.+ -|+ +.+++ |+.+.+......||+|=++-=|-
T Consensus 56 ~vLDl~~GsG~l~l~~lsr~a--~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~- 132 (199)
T PRK10909 56 RCLDCFAGSGALGLEALSRYA--AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPFR- 132 (199)
T ss_pred EEEEcCCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCCC-
Confidence 699999999999975544432 234444544344443322 122 23333 33332222224699887654432
Q ss_pred cCCCcCHHHHHHHHh--hcccCCcEEEEEeCH
Q 006834 555 YQDRCDITNILLEMD--RILRPEGTVIFRDTV 584 (629)
Q Consensus 555 ~~~~c~~~~~l~e~d--RiLrPgG~~i~~d~~ 584 (629)
. ...+.++.-+. .+|.|+|.+++....
T Consensus 133 --~-g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 133 --K-GLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred --C-ChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 1 12333443333 468999999998554
No 423
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=90.84 E-value=0.35 Score=51.00 Aligned_cols=101 Identities=14% Similarity=0.059 Sum_probs=71.1
Q ss_pred CCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc---------CCCeEEEEecCCCC--CCCCCCeeEE
Q 006834 222 NIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER---------GVPAMIGVISSKRL--PYPARAFDMA 290 (629)
Q Consensus 222 ~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er---------g~~~~~~v~d~~~L--p~pd~sFDlV 290 (629)
.+++||=||-|.|.+.+....+ ..+-.+.-.|+.+..++..++- +..+.+..+|...+ ....+.||+|
T Consensus 121 npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi 199 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI 199 (337)
T ss_pred CCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence 4568999999999998888877 3333556678888888887752 35577777765433 2447899999
Q ss_pred EecCcccccccC----HHHHHHHHHhcccCCcEEEEEe
Q 006834 291 HCSGCLIPWYMY----DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 291 ~~s~~L~h~~~d----~~~~L~el~RvLKPGG~liis~ 324 (629)
+.-..= +..+. ...++..+.+.||+||+++..+
T Consensus 200 i~dssd-pvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 200 ITDSSD-PVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred EEecCC-ccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 962211 11111 2458889999999999999985
No 424
>KOG2730 consensus Methylase [General function prediction only]
Probab=90.46 E-value=0.69 Score=46.95 Aligned_cols=91 Identities=18% Similarity=0.135 Sum_probs=61.5
Q ss_pred eEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC--CeEEEEecCCCC----CCCCCCeeEEEecC
Q 006834 225 TAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV--PAMIGVISSKRL----PYPARAFDMAHCSG 294 (629)
Q Consensus 225 ~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~~~L----p~pd~sFDlV~~s~ 294 (629)
.|+|.-||.|..+...+.++..+++| |+++.-+..|+++ |+ .+.|.++|...+ .+....+|+|+.+.
T Consensus 97 ~iidaf~g~gGntiqfa~~~~~VisI---diDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~sp 173 (263)
T KOG2730|consen 97 VIVDAFCGVGGNTIQFALQGPYVIAI---DIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLSP 173 (263)
T ss_pred hhhhhhhcCCchHHHHHHhCCeEEEE---eccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecCC
Confidence 79999999999999999999877666 9999999999876 33 478888886443 34334466777655
Q ss_pred cccccccCHHHHHHHHHhcccCCcE
Q 006834 295 CLIPWYMYDGLYLLEVDRVLRPGGY 319 (629)
Q Consensus 295 ~L~h~~~d~~~~L~el~RvLKPGG~ 319 (629)
.. ..+.....-+..+...+.|.|.
T Consensus 174 pw-ggp~y~~~~~~DL~~~~~p~~~ 197 (263)
T KOG2730|consen 174 PW-GGPSYLRADVYDLETHLKPMGT 197 (263)
T ss_pred CC-CCcchhhhhhhhhhhhcchhHH
Confidence 32 1111223344455555555543
No 425
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=90.36 E-value=3.1 Score=43.69 Aligned_cols=159 Identities=13% Similarity=0.191 Sum_probs=86.2
Q ss_pred hHHHHHHHHHHHHHhhcccCCCCeeEEEeecccchhHHhhhhCC--C--eEEEEecCCCCC--CCchHHHHhhcccceec
Q 006834 457 DNELWKDRMTYYKKIDGLFHKGRYRNVMDMNAYLGGFAAAMSKY--P--VWVMNVVPFHSN--PDTLGAIYERGLIGTYQ 530 (629)
Q Consensus 457 d~~~w~~~v~~y~~~~~~~~~~~~R~vlD~~~g~Ggfaa~l~~~--~--v~~mnv~~~~~~--~~~l~~~~ergli~~~~ 530 (629)
.|+.|...|-.-.+-.. ...+. .++|+|||.|.-+-.|... + |++.-+.+.--. ..+.+..--.|-|++.|
T Consensus 129 ETEE~V~~Vid~~~~~~-~~~~~--~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~ 205 (328)
T KOG2904|consen 129 ETEEWVEAVIDALNNSE-HSKHT--HILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIH 205 (328)
T ss_pred cHHHHHHHHHHHHhhhh-hcccc--eEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEe
Confidence 46778887754333222 22233 5999999999888887653 2 333333332211 11223333345588887
Q ss_pred c-c-cccCCCCC---cccceeeccc--ccc-----------ccCC--------CcC--HHHHHHHHhhcccCCcEEEEEe
Q 006834 531 D-W-CEAFSTYP---RTYDLIHASG--VFS-----------IYQD--------RCD--ITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 531 ~-~-~e~f~~yp---~t~Dl~H~~~--~fs-----------~~~~--------~c~--~~~~l~e~dRiLrPgG~~i~~d 582 (629)
. . .+.+.++| ..+|+|-++- +++ .|.+ .|. +-.++.=.-|.|+|||+++|.-
T Consensus 206 ~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~ 285 (328)
T KOG2904|consen 206 NIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLEL 285 (328)
T ss_pred cccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEe
Confidence 4 2 25777887 8899876642 222 1111 111 1125555679999999999962
Q ss_pred C-----HHHHH-HHHHHHhcCCCeEEEeecCCCCCCCceEEEEEe
Q 006834 583 T-----VEMLV-KIRSITEGMRWKSQIMDHESGPFNPEKILFAAK 621 (629)
Q Consensus 583 ~-----~~~~~-~~~~~~~~l~w~~~~~~~e~~~~~~e~~l~~~K 621 (629)
. ...+. -|....+.-.|.+.++..- .+.+++++..+
T Consensus 286 ~~~~~~~~lv~~~m~s~~~d~~~~~~v~~Df---~~~~Rfv~i~r 327 (328)
T KOG2904|consen 286 VERKEHSYLVRIWMISLKDDSNGKAAVVSDF---AGRPRFVIIHR 327 (328)
T ss_pred cccccCcHHHHHHHHhchhhccchhheeecc---cCCcceEEEEe
Confidence 2 12222 2333355555666554322 24566666544
No 426
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=90.34 E-value=0.3 Score=51.21 Aligned_cols=115 Identities=17% Similarity=0.226 Sum_probs=65.2
Q ss_pred chhhH-HHHHHHHHHHHHhhcccCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcccceeccc
Q 006834 454 LREDN-ELWKDRMTYYKKIDGLFHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGLIGTYQDW 532 (629)
Q Consensus 454 f~~d~-~~w~~~v~~y~~~~~~~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergli~~~~~~ 532 (629)
|.+|. ..|.+ |..+ +.....+.+ ++|.|||.| .++...|. .-+++-|....-++....-|--.+ -.
T Consensus 25 fs~tr~~~Wp~-v~qf---l~~~~~gsv--~~d~gCGng---ky~~~~p~--~~~ig~D~c~~l~~~ak~~~~~~~--~~ 91 (293)
T KOG1331|consen 25 FSATRAAPWPM-VRQF---LDSQPTGSV--GLDVGCGNG---KYLGVNPL--CLIIGCDLCTGLLGGAKRSGGDNV--CR 91 (293)
T ss_pred ccccccCccHH-HHHH---HhccCCcce--eeecccCCc---ccCcCCCc--ceeeecchhhhhccccccCCCcee--eh
Confidence 55555 56664 3333 333445776 999999987 34444441 112222322111111111111011 11
Q ss_pred cccCC-CCC-cccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006834 533 CEAFS-TYP-RTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 533 ~e~f~-~yp-~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
|.+.. +++ .+||..-...+.+.+..++....+|.|+-|+|||||...+.
T Consensus 92 ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 92 ADALKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred hhhhcCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEE
Confidence 22222 233 78998766666666778889999999999999999996664
No 427
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=90.27 E-value=0.53 Score=48.12 Aligned_cols=95 Identities=8% Similarity=0.028 Sum_probs=59.4
Q ss_pred EEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHh-hccc--------------ceeccccccCCCCC------
Q 006834 482 NVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYE-RGLI--------------GTYQDWCEAFSTYP------ 540 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e-rgli--------------~~~~~~~e~f~~yp------ 540 (629)
.||+.|||-|-=+.+|++.+. .|+.+|-++.-+...++ .|+- +.+.-+|..|-..+
T Consensus 46 rvLvPgCGkg~D~~~LA~~G~---~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~ 122 (226)
T PRK13256 46 VCLIPMCGCSIDMLFFLSKGV---KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNL 122 (226)
T ss_pred eEEEeCCCChHHHHHHHhCCC---cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccccc
Confidence 599999999999999999976 34555555344444333 2221 01222345555553
Q ss_pred cccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEE
Q 006834 541 RTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIF 580 (629)
Q Consensus 541 ~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~ 580 (629)
..||+|-=-+.|-.. +.-.......-|-++|||||.+++
T Consensus 123 ~~fD~VyDra~~~Al-pp~~R~~Y~~~l~~lL~pgg~lll 161 (226)
T PRK13256 123 PVFDIWYDRGAYIAL-PNDLRTNYAKMMLEVCSNNTQILL 161 (226)
T ss_pred CCcCeeeeehhHhcC-CHHHHHHHHHHHHHHhCCCcEEEE
Confidence 357875433334333 223456799999999999998877
No 428
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.23 E-value=0.49 Score=47.68 Aligned_cols=100 Identities=19% Similarity=0.322 Sum_probs=58.5
Q ss_pred HHHHHHHhhcccCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh-----cc--cceeccccccC
Q 006834 464 RMTYYKKIDGLFHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER-----GL--IGTYQDWCEAF 536 (629)
Q Consensus 464 ~v~~y~~~~~~~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er-----gl--i~~~~~~~e~f 536 (629)
.|..+..++. +.++. .||++|||.|=-||-|++.- -.|.-++.- .+|.-...+ |+ +.+.| ....
T Consensus 60 ~vA~m~~~L~-~~~g~--~VLEIGtGsGY~aAvla~l~---~~V~siEr~-~~L~~~A~~~L~~lg~~nV~v~~--gDG~ 130 (209)
T COG2518 60 MVARMLQLLE-LKPGD--RVLEIGTGSGYQAAVLARLV---GRVVSIERI-EELAEQARRNLETLGYENVTVRH--GDGS 130 (209)
T ss_pred HHHHHHHHhC-CCCCC--eEEEECCCchHHHHHHHHHh---CeEEEEEEc-HHHHHHHHHHHHHcCCCceEEEE--CCcc
Confidence 3555555554 56664 59999999996666665541 133333433 344444433 33 22333 2455
Q ss_pred CCCC--cccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006834 537 STYP--RTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 537 ~~yp--~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
.-|| .-||.|+..+-+ -.++.-|+| -|+|||.+|+=
T Consensus 131 ~G~~~~aPyD~I~Vtaaa------~~vP~~Ll~---QL~~gGrlv~P 168 (209)
T COG2518 131 KGWPEEAPYDRIIVTAAA------PEVPEALLD---QLKPGGRLVIP 168 (209)
T ss_pred cCCCCCCCcCEEEEeecc------CCCCHHHHH---hcccCCEEEEE
Confidence 5677 689998863222 234455554 69999999984
No 429
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=90.11 E-value=0.54 Score=48.71 Aligned_cols=113 Identities=19% Similarity=0.294 Sum_probs=64.4
Q ss_pred ccCCCCeeEEEeecccchhHHhhhhC----C-CeEEEEecCCCCCCCchHHH----Hhhcc---cceec-ccc-ccCC-C
Q 006834 474 LFHKGRYRNVMDMNAYLGGFAAAMSK----Y-PVWVMNVVPFHSNPDTLGAI----YERGL---IGTYQ-DWC-EAFS-T 538 (629)
Q Consensus 474 ~~~~~~~R~vlD~~~g~Ggfaa~l~~----~-~v~~mnv~~~~~~~~~l~~~----~ergl---i~~~~-~~~-e~f~-~ 538 (629)
.|.+|.. |++.|.|.|++..+|+. . .|+..-+ ++.....+ .+.|| +.+.| |.| +.|. .
T Consensus 37 ~i~pG~~--VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~-----~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~ 109 (247)
T PF08704_consen 37 DIRPGSR--VLEAGTGSGSLTHALARAVGPTGHVYTYEF-----REDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEE 109 (247)
T ss_dssp T--TT-E--EEEE--TTSHHHHHHHHHHTTTSEEEEEES-----SHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT
T ss_pred CCCCCCE--EEEecCCcHHHHHHHHHHhCCCeEEEcccc-----CHHHHHHHHHHHHHcCCCCCceeEecceeccccccc
Confidence 4888986 99999999999999974 2 2444332 22333332 33455 45666 999 5673 2
Q ss_pred CCcccceeeccccccccCCCcCHHHHHHHHhhcc-cCCcEEEEE-eCHHHHHHHHHHHhcCCCeE
Q 006834 539 YPRTYDLIHASGVFSIYQDRCDITNILLEMDRIL-RPEGTVIFR-DTVEMLVKIRSITEGMRWKS 601 (629)
Q Consensus 539 yp~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiL-rPgG~~i~~-d~~~~~~~~~~~~~~l~w~~ 601 (629)
....+|.+-. +-=+--..+--+-++| ||||.+..= -..+.+.++-..++...|.-
T Consensus 110 ~~~~~DavfL--------Dlp~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~~ 166 (247)
T PF08704_consen 110 LESDFDAVFL--------DLPDPWEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFTD 166 (247)
T ss_dssp -TTSEEEEEE--------ESSSGGGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEEE
T ss_pred ccCcccEEEE--------eCCCHHHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCee
Confidence 3477887665 1112223778889999 999998774 44555555555555566654
No 430
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=89.71 E-value=2.3 Score=46.25 Aligned_cols=98 Identities=18% Similarity=0.059 Sum_probs=63.0
Q ss_pred CeEEEeCCCC-chHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCC-----C-CC-CCCCeeEEEecC
Q 006834 224 RTAVDTGCGV-ASWGAYLLKR-DILTMSFARRDTHEAQVQFALERGVPAMIGVISSKR-----L-PY-PARAFDMAHCSG 294 (629)
Q Consensus 224 ~~VLDIGCGt-G~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~-----L-p~-pd~sFDlV~~s~ 294 (629)
.+||.+|||. |..+..+++. +.. .++.+|.+++.++.+++.+. +.+....... + .+ ....+|+|+..-
T Consensus 186 ~~VlV~g~G~vG~~~~~la~~~g~~--~vi~~~~~~~~~~~~~~~~~-~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~v 262 (386)
T cd08283 186 DTVAVWGCGPVGLFAARSAKLLGAE--RVIAIDRVPERLEMARSHLG-AETINFEEVDDVVEALRELTGGRGPDVCIDAV 262 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHcCC-cEEEcCCcchHHHHHHHHHcCCCCCCEEEECC
Confidence 4899999987 8888888775 332 35667999999999988732 2222111110 1 12 234699998632
Q ss_pred cc-------cc-------cccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 295 CL-------IP-------WYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 295 ~L-------~h-------~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
.- ++ -..+....+.++.+.|+|+|.+++.+
T Consensus 263 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 263 GMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 11 01 11234568899999999999999885
No 431
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=89.59 E-value=1.5 Score=46.93 Aligned_cols=57 Identities=18% Similarity=0.207 Sum_probs=44.8
Q ss_pred HHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc
Q 006834 207 AYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER 266 (629)
Q Consensus 207 ~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er 266 (629)
-+.+.+.+.+...++. .++|.=+|.|..+..+++.... ..++++|.++.+++.|+++
T Consensus 7 Vll~Evl~~L~~~~gg--iyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~ 63 (305)
T TIGR00006 7 VLLDEVVEGLNIKPDG--IYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKER 63 (305)
T ss_pred hhHHHHHHhcCcCCCC--EEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHH
Confidence 3466666666655544 8999999999999999987433 4577889999999999876
No 432
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=89.45 E-value=0.81 Score=46.78 Aligned_cols=94 Identities=15% Similarity=0.201 Sum_probs=57.7
Q ss_pred CchHHHHHHHHhhcCcc----CCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc---CC----CeE
Q 006834 203 NGADAYIDNINELIPLT----GGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER---GV----PAM 271 (629)
Q Consensus 203 ~ga~~~i~~I~~lL~~~----~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er---g~----~~~ 271 (629)
.|+..|++.|.++|... +++..++||||.|.-.+--.+--+. -+..++|.|+++..++.|+.. ++ .+.
T Consensus 55 PgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~e-YgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~ 133 (292)
T COG3129 55 PGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHE-YGWRFVGSEIDSQSLSSAKAIISANPGLERAIR 133 (292)
T ss_pred CChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCccccccccccee-ecceeecCccCHHHHHHHHHHHHcCcchhhhee
Confidence 45677888888888653 3345689999998764322221111 134678889999999998743 21 122
Q ss_pred EEEe-cCCCC-C---CCCCCeeEEEecCccc
Q 006834 272 IGVI-SSKRL-P---YPARAFDMAHCSGCLI 297 (629)
Q Consensus 272 ~~v~-d~~~L-p---~pd~sFDlV~~s~~L~ 297 (629)
+..- +...+ + -..+.||++.|+.-+|
T Consensus 134 lr~qk~~~~if~giig~nE~yd~tlCNPPFh 164 (292)
T COG3129 134 LRRQKDSDAIFNGIIGKNERYDATLCNPPFH 164 (292)
T ss_pred EEeccCccccccccccccceeeeEecCCCcc
Confidence 2221 11111 1 1257899999999774
No 433
>PHA01634 hypothetical protein
Probab=89.28 E-value=2.5 Score=39.58 Aligned_cols=69 Identities=16% Similarity=-0.006 Sum_probs=46.6
Q ss_pred CCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEE--EecCCCCCCCCCCeeEEEe
Q 006834 222 NIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIG--VISSKRLPYPARAFDMAHC 292 (629)
Q Consensus 222 ~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~--v~d~~~Lp~pd~sFDlV~~ 292 (629)
.+++|+|||.+.|..+.+++-+|.. .+.+++.++...+..++.-....+. ......++-.-+.||+...
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK--~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~eW~~~Y~~~Di~~i 98 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGAS--FVVQYEKEEKLRKKWEEVCAYFNICDKAVMKGEWNGEYEDVDIFVM 98 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCcc--EEEEeccCHHHHHHHHHHhhhheeeeceeecccccccCCCcceEEE
Confidence 3569999999999999999999876 4567799999999998742111111 1112234433456887763
No 434
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=88.82 E-value=1.3 Score=45.02 Aligned_cols=137 Identities=18% Similarity=0.275 Sum_probs=84.2
Q ss_pred ccCCCCeeEEEeecccchhHHhhhhC----C-CeEEEEecCCCCCCCchHHHHhhcc-cceeccccccCCCCCccccee-
Q 006834 474 LFHKGRYRNVMDMNAYLGGFAAAMSK----Y-PVWVMNVVPFHSNPDTLGAIYERGL-IGTYQDWCEAFSTYPRTYDLI- 546 (629)
Q Consensus 474 ~~~~~~~R~vlD~~~g~Ggfaa~l~~----~-~v~~mnv~~~~~~~~~l~~~~ergl-i~~~~~~~e~f~~yp~t~Dl~- 546 (629)
.|.+|+- ||-+||..|....++.+ . .|+++..+|.-.. +.+.++-.|-- |.++.| .++|..|-++
T Consensus 70 ~ik~gsk--VLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~r-dL~~la~~R~NIiPIl~D-----Ar~P~~Y~~lv 141 (229)
T PF01269_consen 70 PIKPGSK--VLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMR-DLLNLAKKRPNIIPILED-----ARHPEKYRMLV 141 (229)
T ss_dssp S--TT-E--EEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHH-HHHHHHHHSTTEEEEES------TTSGGGGTTTS
T ss_pred CCCCCCE--EEEecccCCCccchhhhccCCCCcEEEEEecchhHH-HHHHHhccCCceeeeecc-----CCChHHhhccc
Confidence 4566654 99999999999999864 3 4689999988775 77788888765 777765 3355444322
Q ss_pred -eccccccccCCCcCHHHHHHHHhhcccCCcEEEEE----------eCHHHHHHHHHHHhcCCCeE-EEeecCCCCCCCc
Q 006834 547 -HASGVFSIYQDRCDITNILLEMDRILRPEGTVIFR----------DTVEMLVKIRSITEGMRWKS-QIMDHESGPFNPE 614 (629)
Q Consensus 547 -H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~----------d~~~~~~~~~~~~~~l~w~~-~~~~~e~~~~~~e 614 (629)
..+-+|..-...-..+-+++-+..-||+||+++|. ++.++...-.+.++.-..+. ...+.| |+.+.
T Consensus 142 ~~VDvI~~DVaQp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~i~Le--Py~~d 219 (229)
T PF01269_consen 142 EMVDVIFQDVAQPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQITLE--PYERD 219 (229)
T ss_dssp --EEEEEEE-SSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEEEE-T--TTSTT
T ss_pred ccccEEEecCCChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheEeccC--CCCCC
Confidence 23334443334445556888889999999999996 22333333333344434444 344555 56666
Q ss_pred eEEEEE
Q 006834 615 KILFAA 620 (629)
Q Consensus 615 ~~l~~~ 620 (629)
-++|.-
T Consensus 220 H~~vv~ 225 (229)
T PF01269_consen 220 HAMVVG 225 (229)
T ss_dssp EEEEEE
T ss_pred cEEEEE
Confidence 666543
No 435
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=88.71 E-value=0.53 Score=47.76 Aligned_cols=120 Identities=15% Similarity=0.238 Sum_probs=76.9
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHH-hhcc------cce--------eccccccCCCCC----c
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIY-ERGL------IGT--------YQDWCEAFSTYP----R 541 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~-ergl------i~~--------~~~~~e~f~~yp----~ 541 (629)
..||+-|||.|--+.+|++++. +|+.+|-++.-++..+ ++++ ++. +.-+|..|-.++ .
T Consensus 39 ~rvLvPgCG~g~D~~~La~~G~---~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g 115 (218)
T PF05724_consen 39 GRVLVPGCGKGYDMLWLAEQGH---DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVG 115 (218)
T ss_dssp EEEEETTTTTSCHHHHHHHTTE---EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHH
T ss_pred CeEEEeCCCChHHHHHHHHCCC---eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcC
Confidence 3599999999999999999985 6677777655555553 4554 111 122455565554 3
Q ss_pred ccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEE-E-e--------CH-H-HHHHHHHHHhcCCCeEEEee
Q 006834 542 TYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIF-R-D--------TV-E-MLVKIRSITEGMRWKSQIMD 605 (629)
Q Consensus 542 t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~-~-d--------~~-~-~~~~~~~~~~~l~w~~~~~~ 605 (629)
.||+|-=-+.|-.. +....+....-|.++|+|||.+++ + + +. . ....|++++. -.|++....
T Consensus 116 ~fD~iyDr~~l~Al-pp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~-~~f~i~~l~ 189 (218)
T PF05724_consen 116 KFDLIYDRTFLCAL-PPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG-PGFEIEELE 189 (218)
T ss_dssp SEEEEEECSSTTTS--GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHT-TTEEEEEEE
T ss_pred CceEEEEecccccC-CHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc-CCcEEEEEe
Confidence 58887644444333 234668899999999999999433 2 1 01 1 2567788877 777876544
No 436
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=88.56 E-value=0.18 Score=45.73 Aligned_cols=39 Identities=26% Similarity=0.406 Sum_probs=28.0
Q ss_pred CeeEEEecCcc--cccccC---HHHHHHHHHhcccCCcEEEEEe
Q 006834 286 AFDMAHCSGCL--IPWYMY---DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 286 sFDlV~~s~~L--~h~~~d---~~~~L~el~RvLKPGG~liis~ 324 (629)
.||+|+|..+. +|+..- ...+++.+.+.|+|||+|++.-
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 48999996654 343311 2359999999999999999983
No 437
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=88.08 E-value=3.5 Score=42.75 Aligned_cols=99 Identities=12% Similarity=0.076 Sum_probs=57.5
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHH--HHHHHc--------CCCeEEEEecCCCCC---CCCCC-ee
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQV--QFALER--------GVPAMIGVISSKRLP---YPARA-FD 288 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i--~~A~er--------g~~~~~~v~d~~~Lp---~pd~s-FD 288 (629)
..+||++|.|+|-.+...+..... .+.-.|...... +..++. |..+.....+-...+ +-... ||
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~--~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGA--EVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcc--eeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 447999999999766666654322 122235443322 222211 223333333221111 11122 99
Q ss_pred EEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 289 MAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 289 lV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
+|+++.|+.+-. ..+.++.-+...|-.+|.+++..
T Consensus 165 lilasDvvy~~~-~~e~Lv~tla~ll~~~~~i~l~~ 199 (248)
T KOG2793|consen 165 LILASDVVYEEE-SFEGLVKTLAFLLAKDGTIFLAY 199 (248)
T ss_pred EEEEeeeeecCC-cchhHHHHHHHHHhcCCeEEEEE
Confidence 999999995544 67788888999999999777764
No 438
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=88.05 E-value=3.2 Score=43.35 Aligned_cols=90 Identities=17% Similarity=0.237 Sum_probs=59.3
Q ss_pred CeEEEeCCC-CchHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCC-----CCCCCCeeEEEecCcc
Q 006834 224 RTAVDTGCG-VASWGAYLLKR-DILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRL-----PYPARAFDMAHCSGCL 296 (629)
Q Consensus 224 ~~VLDIGCG-tG~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~L-----p~pd~sFDlV~~s~~L 296 (629)
.+||..|+| .|..+..+++. |.. ++.++.+++..+.+++.+....+...+ ... ....+.+|+|+....
T Consensus 167 ~~vli~g~g~vG~~~~~la~~~G~~---V~~~~~s~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~D~vid~~g- 241 (338)
T cd08254 167 ETVLVIGLGGLGLNAVQIAKAMGAA---VIAVDIKEEKLELAKELGADEVLNSLD-DSPKDKKAAGLGGGFDVIFDFVG- 241 (338)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCE---EEEEcCCHHHHHHHHHhCCCEEEcCCC-cCHHHHHHHhcCCCceEEEECCC-
Confidence 378888876 47777777764 443 455688999999987776533221111 000 123467999885321
Q ss_pred cccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 297 IPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 297 ~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
....+.++.+.|+++|.++..+
T Consensus 242 ------~~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 242 ------TQPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred ------CHHHHHHHHHHhhcCCEEEEEC
Confidence 1357888999999999999875
No 439
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=87.67 E-value=2.3 Score=46.83 Aligned_cols=98 Identities=13% Similarity=0.133 Sum_probs=65.8
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCC---eEEEEecCCCCC-CCCCCeeEEEecC
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GVP---AMIGVISSKRLP-YPARAFDMAHCSG 294 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~---~~~~v~d~~~Lp-~pd~sFDlV~~s~ 294 (629)
..+|||.=+|+|.=+...+.....+..++..|+++++++..+++ +.. +.+...|+..+- ...+.||+|=.
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDl-- 127 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDL-- 127 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE--
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEe--
Confidence 34899999999977777766532344678889999999998865 332 456666665543 24678999973
Q ss_pred cccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 295 CLIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 295 ~L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
.++- .+..+|..+.+.+|.||+|.++..
T Consensus 128 --DPfG-Sp~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 128 --DPFG-SPAPFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp ----SS---HHHHHHHHHHEEEEEEEEEEE-
T ss_pred --CCCC-CccHhHHHHHHHhhcCCEEEEecc
Confidence 2333 567899999999999999999864
No 440
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=87.49 E-value=1.2 Score=44.81 Aligned_cols=33 Identities=21% Similarity=0.228 Sum_probs=22.8
Q ss_pred HHHHHHHhhcccCCcEEEE-EeCHHHHHHHHHHH
Q 006834 562 TNILLEMDRILRPEGTVIF-RDTVEMLVKIRSIT 594 (629)
Q Consensus 562 ~~~l~e~dRiLrPgG~~i~-~d~~~~~~~~~~~~ 594 (629)
..+|.|.--+||+||.++. +|-.+...-+.+.+
T Consensus 163 ~~l~~eyay~l~~gg~~ytitDv~elh~wm~~~~ 196 (249)
T KOG3115|consen 163 STLLSEYAYVLREGGILYTITDVKELHEWMVKHL 196 (249)
T ss_pred hhHHHHHHhhhhcCceEEEEeeHHHHHHHHHHHH
Confidence 3588999999999999876 45544444444433
No 441
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=87.37 E-value=6.2 Score=42.89 Aligned_cols=91 Identities=15% Similarity=0.229 Sum_probs=61.4
Q ss_pred CCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcccceeccccccCCCC--Ccccceeecccccc
Q 006834 476 HKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAFSTY--PRTYDLIHASGVFS 553 (629)
Q Consensus 476 ~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergli~~~~~~~e~f~~y--p~t~Dl~H~~~~fs 553 (629)
..|. +|||+||..|||.-.|.+++. .|+.+|.. .+-+.+.+-+-+-.+.. ..|..- ++.+|++-|+-+
T Consensus 210 ~~g~--~vlDLGAsPGGWT~~L~~rG~---~V~AVD~g-~l~~~L~~~~~V~h~~~--d~fr~~p~~~~vDwvVcDmv-- 279 (357)
T PRK11760 210 APGM--RAVDLGAAPGGWTYQLVRRGM---FVTAVDNG-PMAQSLMDTGQVEHLRA--DGFKFRPPRKNVDWLVCDMV-- 279 (357)
T ss_pred CCCC--EEEEeCCCCcHHHHHHHHcCC---EEEEEech-hcCHhhhCCCCEEEEec--cCcccCCCCCCCCEEEEecc--
Confidence 4454 599999999999999999986 55666654 45555666665444431 233333 477899987332
Q ss_pred ccCCCcCHHHHHHHHhhcccCC--cEEEEE
Q 006834 554 IYQDRCDITNILLEMDRILRPE--GTVIFR 581 (629)
Q Consensus 554 ~~~~~c~~~~~l~e~dRiLrPg--G~~i~~ 581 (629)
|.-..++.=|-++|.-| ..+|++
T Consensus 280 -----e~P~rva~lm~~Wl~~g~cr~aIfn 304 (357)
T PRK11760 280 -----EKPARVAELMAQWLVNGWCREAIFN 304 (357)
T ss_pred -----cCHHHHHHHHHHHHhcCcccEEEEE
Confidence 44445777778888776 578886
No 442
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=87.36 E-value=0.38 Score=50.26 Aligned_cols=40 Identities=18% Similarity=0.288 Sum_probs=32.0
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER 523 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er 523 (629)
.+|||+|||+|.++.+|+++.- .|+.+|..+.+++.+.++
T Consensus 44 ~~VLEiG~G~G~lt~~L~~~~~---~v~avE~d~~~~~~~~~~ 83 (272)
T PRK00274 44 DNVLEIGPGLGALTEPLLERAA---KVTAVEIDRDLAPILAET 83 (272)
T ss_pred CeEEEeCCCccHHHHHHHHhCC---cEEEEECCHHHHHHHHHh
Confidence 4699999999999999998743 556666666788888765
No 443
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=87.21 E-value=0.59 Score=48.15 Aligned_cols=42 Identities=14% Similarity=0.210 Sum_probs=29.7
Q ss_pred CeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh
Q 006834 479 RYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER 523 (629)
Q Consensus 479 ~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er 523 (629)
.-.+|||+|||+|.+.+.|+++.- .|+.+|..+.+++.+.++
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~ 70 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKL 70 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHH
Confidence 345799999999999999988743 244445554666666544
No 444
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=87.12 E-value=0.48 Score=48.28 Aligned_cols=97 Identities=19% Similarity=0.321 Sum_probs=65.4
Q ss_pred CeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh---cccceeccccccCCCCC-cccceeecccccc-
Q 006834 479 RYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER---GLIGTYQDWCEAFSTYP-RTYDLIHASGVFS- 553 (629)
Q Consensus 479 ~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er---gli~~~~~~~e~f~~yp-~t~Dl~H~~~~fs- 553 (629)
..-+++|+||+.|-.+.+|...+| --+.-.|.+-.+++-..+- +++-.|-.--|-|..|- +++|||-++ +|
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~v--ekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisS--lsl 147 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGV--EKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISS--LSL 147 (325)
T ss_pred hCcceeecccchhhhhHHHHhcch--hheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhh--hhh
Confidence 345699999999999999999987 2223334444566666554 55555554446676676 999996541 11
Q ss_pred ccCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006834 554 IYQDRCDITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 554 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
.|. -+++.-|...--+|+|.|.||-+
T Consensus 148 HW~--NdLPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 148 HWT--NDLPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred hhh--ccCchHHHHHHHhcCCCccchhH
Confidence 122 23566778888899999999864
No 445
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=86.94 E-value=0.69 Score=47.91 Aligned_cols=63 Identities=8% Similarity=0.145 Sum_probs=40.0
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhc----ccceeccccccCCCCC-cccceeecc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERG----LIGTYQDWCEAFSTYP-RTYDLIHAS 549 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~erg----li~~~~~~~e~f~~yp-~t~Dl~H~~ 549 (629)
.+|||+|||+|.+...|+++.. .|+.+|..+.+++.+.++- -+.+++ +.+..+| ..||.|-++
T Consensus 31 ~~VLEIG~G~G~lt~~L~~~~~---~v~~vEid~~~~~~l~~~~~~~~~v~ii~---~D~~~~~~~~~d~Vv~N 98 (258)
T PRK14896 31 DPVLEIGPGKGALTDELAKRAK---KVYAIELDPRLAEFLRDDEIAAGNVEIIE---GDALKVDLPEFNKVVSN 98 (258)
T ss_pred CeEEEEeCccCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHhccCCCEEEEE---eccccCCchhceEEEEc
Confidence 5699999999999999998743 3455555556777766542 133333 3333333 346776553
No 446
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=86.91 E-value=0.82 Score=48.82 Aligned_cols=62 Identities=18% Similarity=0.298 Sum_probs=37.8
Q ss_pred cccceeecccccc-ccCCCcCHHHHHHHHhhcccCCcEEEEEe--CHHHHHHHHHHHhcCCCeEEE
Q 006834 541 RTYDLIHASGVFS-IYQDRCDITNILLEMDRILRPEGTVIFRD--TVEMLVKIRSITEGMRWKSQI 603 (629)
Q Consensus 541 ~t~Dl~H~~~~fs-~~~~~c~~~~~l~e~dRiLrPgG~~i~~d--~~~~~~~~~~~~~~l~w~~~~ 603 (629)
..||++-|--.|- .+..--...-.|.-+-+.|||||+||=|- ...++.+|+.. ...+|.-.+
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~-e~~~~gNdi 259 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAG-EVERFGNDI 259 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhc-cchhhccee
Confidence 3499977633321 11111222347788999999999999984 44467777765 444554433
No 447
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=86.78 E-value=0.42 Score=46.26 Aligned_cols=44 Identities=27% Similarity=0.361 Sum_probs=35.4
Q ss_pred CCCeeEEEecCccccccc-------C---HHHHHHHHHhcccCCcEEEEEeCCC
Q 006834 284 ARAFDMAHCSGCLIPWYM-------Y---DGLYLLEVDRVLRPGGYWILSGPPI 327 (629)
Q Consensus 284 d~sFDlV~~s~~L~h~~~-------d---~~~~L~el~RvLKPGG~liis~P~~ 327 (629)
.++||.+.|..+++|.-- + ....+.++.++|||||.|++..|-.
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG 114 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVG 114 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecC
Confidence 578999999888877641 1 2368999999999999999998843
No 448
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=86.52 E-value=1.8 Score=45.43 Aligned_cols=67 Identities=9% Similarity=-0.022 Sum_probs=50.0
Q ss_pred eEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCC--CCCeeEEEecC
Q 006834 225 TAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYP--ARAFDMAHCSG 294 (629)
Q Consensus 225 ~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~p--d~sFDlV~~s~ 294 (629)
+|+|+-||.|.+...+.+.|... +.++|+++.+++..+.+.... +...|...+... ...+|+++.+.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~--v~a~e~~~~a~~~~~~N~~~~-~~~~Di~~~~~~~~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEI--VAANEIDKSAAETYEANFPNK-LIEGDITKIDEKDFIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEE--EEEEeCCHHHHHHHHHhCCCC-CccCccccCchhhcCCCCCEEEeCC
Confidence 69999999999999998888653 467899999999887775433 444566555422 35699999744
No 449
>PRK10742 putative methyltransferase; Provisional
Probab=86.43 E-value=2.7 Score=43.54 Aligned_cols=86 Identities=10% Similarity=0.023 Sum_probs=56.9
Q ss_pred HHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHH---Hc-------C----CCeEEEEe
Q 006834 210 DNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFAL---ER-------G----VPAMIGVI 275 (629)
Q Consensus 210 ~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~---er-------g----~~~~~~v~ 275 (629)
+.|.+.+..+.+..-+|||.-+|.|..+..++.+|..+ +.+|-++......+ ++ + .++.+...
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~~V---~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~ 152 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRV---RMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA 152 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCCEE---EEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeC
Confidence 45666666655544489999999999999999998864 55598887766554 22 1 12444445
Q ss_pred cCCCC-CCCCCCeeEEEecCcccc
Q 006834 276 SSKRL-PYPARAFDMAHCSGCLIP 298 (629)
Q Consensus 276 d~~~L-p~pd~sFDlV~~s~~L~h 298 (629)
|...+ .-...+||+|+.-..+.|
T Consensus 153 da~~~L~~~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 153 SSLTALTDITPRPQVVYLDPMFPH 176 (250)
T ss_pred cHHHHHhhCCCCCcEEEECCCCCC
Confidence 54322 212347999998776644
No 450
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=86.23 E-value=0.59 Score=49.01 Aligned_cols=118 Identities=16% Similarity=0.233 Sum_probs=62.9
Q ss_pred hHHHHHHHHhhc-CccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHH------------HcCCCeE
Q 006834 205 ADAYIDNINELI-PLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFAL------------ERGVPAM 271 (629)
Q Consensus 205 a~~~i~~I~~lL-~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~------------erg~~~~ 271 (629)
+-...+.+.+-+ ....-++++|||+|||.|.-+......+. ..+...|.+.+.++.-. +......
T Consensus 98 S~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~--~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~ 175 (282)
T KOG2920|consen 98 SVDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGA--VSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHK 175 (282)
T ss_pred HHHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhcc--ceeeeEecchhheeeecccceecchhhhhhhhhccc
Confidence 344445555333 11122355999999999988887777663 23344466666553211 1000000
Q ss_pred EEEecCC---CCCC-CCC--CeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 272 IGVISSK---RLPY-PAR--AFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 272 ~~v~d~~---~Lp~-pd~--sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
+...... .+-+ ..+ .||+|.++..+.........++......+++.|.+++++
T Consensus 176 ~~~i~~s~l~dg~~~~t~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~aA 234 (282)
T KOG2920|consen 176 VDEILNSLLSDGVFNHTERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVAA 234 (282)
T ss_pred ceeccccccccchhhhccccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhhh
Confidence 1000001 1111 112 789998888775444223333667778889999998874
No 451
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=85.37 E-value=14 Score=37.44 Aligned_cols=113 Identities=10% Similarity=0.030 Sum_probs=70.1
Q ss_pred chHHHHHHHHhhcC---ccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHH----HHHHHcCCCeEEEEec
Q 006834 204 GADAYIDNINELIP---LTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQV----QFALERGVPAMIGVIS 276 (629)
Q Consensus 204 ga~~~i~~I~~lL~---~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i----~~A~erg~~~~~~v~d 276 (629)
....+...|..-+. ...++ +||=+|+.+|+....++.--..+ .+++++.|+... ..|.+|. ++.-...|
T Consensus 57 ~RSKLaAaIl~Gl~~~pi~~g~--~VLYLGAasGTTvSHVSDIv~~G-~iYaVEfs~R~~reLl~~a~~R~-Ni~PIL~D 132 (231)
T COG1889 57 RRSKLAAAILKGLKNFPIKEGS--KVLYLGAASGTTVSHVSDIVGEG-RIYAVEFSPRPMRELLDVAEKRP-NIIPILED 132 (231)
T ss_pred chhHHHHHHHcCcccCCcCCCC--EEEEeeccCCCcHhHHHhccCCC-cEEEEEecchhHHHHHHHHHhCC-Cceeeecc
Confidence 34555555555444 33444 99999999999888887753222 356778887654 4555553 33333444
Q ss_pred CCCCC----CCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 277 SKRLP----YPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 277 ~~~Lp----~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
+.. | .-=+..|+|++--. -+.+.+.+..++..-||+||+++++.
T Consensus 133 A~~-P~~Y~~~Ve~VDviy~DVA---Qp~Qa~I~~~Na~~FLk~~G~~~i~i 180 (231)
T COG1889 133 ARK-PEKYRHLVEKVDVIYQDVA---QPNQAEILADNAEFFLKKGGYVVIAI 180 (231)
T ss_pred cCC-cHHhhhhcccccEEEEecC---CchHHHHHHHHHHHhcccCCeEEEEE
Confidence 432 2 11246899886221 12123458889999999999888874
No 452
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=85.04 E-value=4.8 Score=44.10 Aligned_cols=108 Identities=14% Similarity=0.208 Sum_probs=62.7
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc--cceec-cccccCCC-CCcccceeeccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL--IGTYQ-DWCEAFST-YPRTYDLIHASGVF 552 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl--i~~~~-~~~e~f~~-yp~t~Dl~H~~~~f 552 (629)
++|||++||+|.|+..|+.+.- .|+.+|..+..+..+.+. |+ +-.+. |. +.+.. .-..||+|-.+
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~~---~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~-~~~~~~~~~~~D~vi~D--- 307 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPDT---QLTGIEIESEAIACAQQSAQMLGLDNLSFAALDS-AKFATAQMSAPELVLVN--- 307 (374)
T ss_pred CEEEEccCCccHHHHHHhhcCC---eEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCH-HHHHHhcCCCCCEEEEC---
Confidence 4699999999999999987642 456666655566555432 22 22222 11 11111 11348887663
Q ss_pred cccCCCcCH-HHHHHHHhhcccCCcEEEEEeCHH-HHHHHHHHHhcCCCeEE
Q 006834 553 SIYQDRCDI-TNILLEMDRILRPEGTVIFRDTVE-MLVKIRSITEGMRWKSQ 602 (629)
Q Consensus 553 s~~~~~c~~-~~~l~e~dRiLrPgG~~i~~d~~~-~~~~~~~~~~~l~w~~~ 602 (629)
..|..+ +.++..+. -|+|++.++++-+.. ....++.+ . .|+++
T Consensus 308 ---PPr~G~~~~~l~~l~-~~~p~~ivyvsc~p~TlaRDl~~L-~--gy~l~ 352 (374)
T TIGR02085 308 ---PPRRGIGKELCDYLS-QMAPKFILYSSCNAQTMAKDIAEL-S--GYQIE 352 (374)
T ss_pred ---CCCCCCcHHHHHHHH-hcCCCeEEEEEeCHHHHHHHHHHh-c--CceEE
Confidence 223332 33444443 379999999986655 45556655 3 46654
No 453
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=84.99 E-value=3.9 Score=43.61 Aligned_cols=94 Identities=14% Similarity=0.115 Sum_probs=58.9
Q ss_pred CCeEEEeCCC-CchHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHcCCCeEEEEe--cCCCCCCCCCCeeEEEecCcccc
Q 006834 223 IRTAVDTGCG-VASWGAYLLKR-DILTMSFARRDTHEAQVQFALERGVPAMIGVI--SSKRLPYPARAFDMAHCSGCLIP 298 (629)
Q Consensus 223 ~~~VLDIGCG-tG~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~--d~~~Lp~pd~sFDlV~~s~~L~h 298 (629)
+.+||=+||| .|.++..+++. |.. .++.+|.+++.++.+++.|....+... +..++....+.||+|+-.-.
T Consensus 170 g~~VlV~G~G~vG~~aiqlak~~G~~--~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G--- 244 (343)
T PRK09880 170 GKRVFVSGVGPIGCLIVAAVKTLGAA--EIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSG--- 244 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCc--EEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCC---
Confidence 3488888876 45666666654 442 245569999999999988754322111 11111111235899885321
Q ss_pred cccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 299 WYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 299 ~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
....+....++|++||.+++.+.
T Consensus 245 ----~~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 245 ----HPSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred ----CHHHHHHHHHHhhcCCEEEEEcc
Confidence 12467788899999999999863
No 454
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=84.74 E-value=8.1 Score=39.85 Aligned_cols=132 Identities=20% Similarity=0.238 Sum_probs=74.9
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcc-cceeccccccCCCCC----cccceeecccccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGL-IGTYQDWCEAFSTYP----RTYDLIHASGVFSIY 555 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergl-i~~~~~~~e~f~~yp----~t~Dl~H~~~~fs~~ 555 (629)
|++||+||-+|||--.|.+++. --|..+|-..++|.-=+.... +-++ .-+-...--| .-.|++-|+--|-
T Consensus 81 kv~LDiGsSTGGFTd~lLq~gA--k~VyavDVG~~Ql~~kLR~d~rV~~~-E~tN~r~l~~~~~~~~~d~~v~DvSFI-- 155 (245)
T COG1189 81 KVVLDIGSSTGGFTDVLLQRGA--KHVYAVDVGYGQLHWKLRNDPRVIVL-ERTNVRYLTPEDFTEKPDLIVIDVSFI-- 155 (245)
T ss_pred CEEEEecCCCccHHHHHHHcCC--cEEEEEEccCCccCHhHhcCCcEEEE-ecCChhhCCHHHcccCCCeEEEEeehh--
Confidence 4599999999999999988854 112222222233333322222 1111 0000000111 2346666544332
Q ss_pred CCCcCHHHHHHHHhhcccCCcEEEEE-------------------eC---HHHHHHHHHHHhcCCCeEEEeec--CCCCC
Q 006834 556 QDRCDITNILLEMDRILRPEGTVIFR-------------------DT---VEMLVKIRSITEGMRWKSQIMDH--ESGPF 611 (629)
Q Consensus 556 ~~~c~~~~~l~e~dRiLrPgG~~i~~-------------------d~---~~~~~~~~~~~~~l~w~~~~~~~--e~~~~ 611 (629)
++.-+|-.+..+|.|+|.++.- |+ ..++.++.+.+..+.|.+.-... =.|+.
T Consensus 156 ----SL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl~~Spi~G~~ 231 (245)
T COG1189 156 ----SLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGLIKSPIKGGK 231 (245)
T ss_pred ----hHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeeeEccCccCCC
Confidence 3456899999999999998874 33 34688899999999999863321 12322
Q ss_pred -CCceEEEEEe
Q 006834 612 -NPEKILFAAK 621 (629)
Q Consensus 612 -~~e~~l~~~K 621 (629)
+-|-++..+|
T Consensus 232 GNiE~l~~~~k 242 (245)
T COG1189 232 GNIEFLLLLKK 242 (245)
T ss_pred CcEeeeeeeec
Confidence 3355555554
No 455
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=84.62 E-value=1.7 Score=42.86 Aligned_cols=53 Identities=9% Similarity=-0.017 Sum_probs=36.0
Q ss_pred HHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHH
Q 006834 207 AYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALE 265 (629)
Q Consensus 207 ~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~e 265 (629)
.+++.+.++.. ..+..|||.-||+|+.+....+.|-.. .|+|+++..++.|.+
T Consensus 179 ~l~~~lI~~~t---~~gdiVlDpF~GSGTT~~aa~~l~R~~---ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 179 ELIERLIKAST---NPGDIVLDPFAGSGTTAVAAEELGRRY---IGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHHS----TT-EEEETT-TTTHHHHHHHHTT-EE---EEEESSHHHHHHHHH
T ss_pred HHHHHHHHhhh---ccceeeehhhhccChHHHHHHHcCCeE---EEEeCCHHHHHHhcC
Confidence 33444444432 234489999999999988888887654 455999999999864
No 456
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=84.45 E-value=8.4 Score=37.45 Aligned_cols=96 Identities=18% Similarity=0.126 Sum_probs=59.6
Q ss_pred eCCCCchHHHHHHHcCC--cEeEEEeecCcHHHHHHH----------HHcCCCeEEEEecCCCCC----CCCCCeeEEEe
Q 006834 229 TGCGVASWGAYLLKRDI--LTMSFARRDTHEAQVQFA----------LERGVPAMIGVISSKRLP----YPARAFDMAHC 292 (629)
Q Consensus 229 IGCGtG~~a~~La~~g~--~~v~i~gvDiS~~~i~~A----------~erg~~~~~~v~d~~~Lp----~pd~sFDlV~~ 292 (629)
||=|.=+|+..|++... ..+-.+..|..++..+.. ++.|..+.+. .|+.++. ...+.||.|+-
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~-VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHG-VDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccC-CCCCcccccccccCCcCCEEEE
Confidence 56677788888887632 222234456655444432 2345545443 3555553 35689999998
Q ss_pred cCccccccc-----C-------HHHHHHHHHhcccCCcEEEEEeC
Q 006834 293 SGCLIPWYM-----Y-------DGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 293 s~~L~h~~~-----d-------~~~~L~el~RvLKPGG~liis~P 325 (629)
++-...... + ...++..+.++|+++|.+.++..
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~ 126 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLK 126 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 776543110 1 12588999999999999999853
No 457
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=84.21 E-value=0.65 Score=46.78 Aligned_cols=100 Identities=11% Similarity=-0.104 Sum_probs=50.7
Q ss_pred CCeEEEeCCCCchHHHHHHHc---CCcEeEEEeecCcHHHHHH-HHHc---CCCeEEEEecCCCCC----C----CCCCe
Q 006834 223 IRTAVDTGCGVASWGAYLLKR---DILTMSFARRDTHEAQVQF-ALER---GVPAMIGVISSKRLP----Y----PARAF 287 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~---g~~~v~i~gvDiS~~~i~~-A~er---g~~~~~~v~d~~~Lp----~----pd~sF 287 (629)
+.+|+|+|.-.|.-+.++++. ......+.++|+.-..... |.+. ...+.+.++|..... . ....-
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~~ 112 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPHP 112 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----SS
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCCc
Confidence 448999999998777666542 2122356677985433322 2222 256888888765431 1 12234
Q ss_pred eEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 288 DMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 288 DlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
.+|+--. +|-..+....|+....+|+||+|+++..
T Consensus 113 vlVilDs--~H~~~hvl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 113 VLVILDS--SHTHEHVLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp EEEEESS------SSHHHHHHHHHHT--TT-EEEETS
T ss_pred eEEEECC--CccHHHHHHHHHHhCccCCCCCEEEEEe
Confidence 4555322 2444456677888999999999999964
No 458
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=84.01 E-value=2 Score=46.76 Aligned_cols=79 Identities=15% Similarity=0.144 Sum_probs=52.5
Q ss_pred EeecCCeeeecCCCCCCCCchHHHHHHHHhhcCccCC-CCCeEEEeCCCCchHHHHHHHcC-------CcEeEEEeecCc
Q 006834 185 IQVEGHRFRFPGGGTTFPNGADAYIDNINELIPLTGG-NIRTAVDTGCGVASWGAYLLKRD-------ILTMSFARRDTH 256 (629)
Q Consensus 185 v~~~g~~~~Fpgggt~f~~ga~~~i~~I~~lL~~~~g-~~~~VLDIGCGtG~~a~~La~~g-------~~~v~i~gvDiS 256 (629)
+-..|+.+.-|.-+.+| .+.....+.+++..... .+..++|+|.|.|.++..|+... ....++.-+++|
T Consensus 42 ~G~~GDFiTApels~lF---Gella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s 118 (370)
T COG1565 42 IGRKGDFITAPELSQLF---GELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPS 118 (370)
T ss_pred ccccCCeeechhHHHHH---HHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecC
Confidence 34456766666655566 23334444444443322 24579999999999999888742 235677888999
Q ss_pred HHHHHHHHHc
Q 006834 257 EAQVQFALER 266 (629)
Q Consensus 257 ~~~i~~A~er 266 (629)
++..+.-++.
T Consensus 119 ~~L~~~Qk~~ 128 (370)
T COG1565 119 PELRARQKET 128 (370)
T ss_pred HHHHHHHHHH
Confidence 9998877765
No 459
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=83.68 E-value=10 Score=41.70 Aligned_cols=100 Identities=18% Similarity=0.089 Sum_probs=65.2
Q ss_pred CeEEEeCCCCc----hHHHHHHHc--CCcEeEEEeecC----cHHHHHHHH--------HcCCCeEEEEec---CCC---
Q 006834 224 RTAVDTGCGVA----SWGAYLLKR--DILTMSFARRDT----HEAQVQFAL--------ERGVPAMIGVIS---SKR--- 279 (629)
Q Consensus 224 ~~VLDIGCGtG----~~a~~La~~--g~~~v~i~gvDi----S~~~i~~A~--------erg~~~~~~v~d---~~~--- 279 (629)
-.|+|+|.|.| .+...|+.+ ++..+.|++++. +...++.+. ..|++..|...- .+.
T Consensus 112 vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l~~ 191 (374)
T PF03514_consen 112 VHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESLEDLDP 191 (374)
T ss_pred eEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhhCCH
Confidence 37999999999 445555554 456788999998 665555444 447888876632 222
Q ss_pred --CCCCCCCeeEEEecCcccccccC------HHHHHHHHHhcccCCcEEEEE
Q 006834 280 --LPYPARAFDMAHCSGCLIPWYMY------DGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 280 --Lp~pd~sFDlV~~s~~L~h~~~d------~~~~L~el~RvLKPGG~liis 323 (629)
+...++..=+|.|.+.|+|...+ +...+....|-|+|.-..++.
T Consensus 192 ~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~~E 243 (374)
T PF03514_consen 192 SMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVLVE 243 (374)
T ss_pred HHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEEEe
Confidence 22334556666788888887632 344566777889999555554
No 460
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=83.09 E-value=7.3 Score=38.88 Aligned_cols=94 Identities=19% Similarity=0.098 Sum_probs=52.2
Q ss_pred CCeEEEeCCCCchHHHHHHHcC-CcEeEEEeecCcHHHHHHHHHcCCCeEEEEe-cCCC--------CCCCCCCeeEEEe
Q 006834 223 IRTAVDTGCGVASWGAYLLKRD-ILTMSFARRDTHEAQVQFALERGVPAMIGVI-SSKR--------LPYPARAFDMAHC 292 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g-~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~-d~~~--------Lp~pd~sFDlV~~ 292 (629)
..+|||+||..|+|+.-..++- +.+ -+.|+|+-. ..--.| +.+..+ |... -.+|+...|+|++
T Consensus 70 ~~~VlD~G~APGsWsQVavqr~~p~g-~v~gVDllh----~~p~~G--a~~i~~~dvtdp~~~~ki~e~lp~r~VdvVlS 142 (232)
T KOG4589|consen 70 EDTVLDCGAAPGSWSQVAVQRVNPNG-MVLGVDLLH----IEPPEG--ATIIQGNDVTDPETYRKIFEALPNRPVDVVLS 142 (232)
T ss_pred CCEEEEccCCCChHHHHHHHhhCCCc-eEEEEeeee----ccCCCC--cccccccccCCHHHHHHHHHhCCCCcccEEEe
Confidence 3499999999999998888763 433 345667631 100112 222222 2211 0246788999997
Q ss_pred cCccccccc----CHH-------HHHHHHHhcccCCcEEEEEe
Q 006834 293 SGCLIPWYM----YDG-------LYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 293 s~~L~h~~~----d~~-------~~L~el~RvLKPGG~liis~ 324 (629)
-..- .-.. |.. .++.-....++|+|.|+.-.
T Consensus 143 DMap-naTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~ 184 (232)
T KOG4589|consen 143 DMAP-NATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKL 184 (232)
T ss_pred ccCC-CCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEE
Confidence 3322 1110 111 23444456678999999863
No 461
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=82.90 E-value=0.4 Score=42.21 Aligned_cols=95 Identities=21% Similarity=0.261 Sum_probs=33.0
Q ss_pred EeecccchhHHhhhhCC----C-eEEEEecCCCCCCCchHHHHhhcccceecccc----ccCCCCC-cccceeecccccc
Q 006834 484 MDMNAYLGGFAAAMSKY----P-VWVMNVVPFHSNPDTLGAIYERGLIGTYQDWC----EAFSTYP-RTYDLIHASGVFS 553 (629)
Q Consensus 484 lD~~~g~Ggfaa~l~~~----~-v~~mnv~~~~~~~~~l~~~~ergli~~~~~~~----e~f~~yp-~t~Dl~H~~~~fs 553 (629)
|.+|+..|..+..|++. + ..+..|-+-...+....++.+.|+-..++-.+ +.++.++ +.||++|.++-=+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H~ 80 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDHS 80 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCCC
Confidence 46788888877776542 2 12333433332213444444456633333222 2344566 8999999854211
Q ss_pred ccCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 554 IYQDRCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 554 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
......-|..+-+.|+|||.+++-|
T Consensus 81 ----~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 81 ----YEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred ----HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 1223445666778899999999865
No 462
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=82.20 E-value=7.8 Score=42.27 Aligned_cols=108 Identities=16% Similarity=0.134 Sum_probs=64.5
Q ss_pred cCCCCCeEEEeCCCCchHHHHHHHcCCcE---eEEEeecCcHHHHHHHH---HcCC--CeEEEEecCCCCC---------
Q 006834 219 TGGNIRTAVDTGCGVASWGAYLLKRDILT---MSFARRDTHEAQVQFAL---ERGV--PAMIGVISSKRLP--------- 281 (629)
Q Consensus 219 ~~g~~~~VLDIGCGtG~~a~~La~~g~~~---v~i~gvDiS~~~i~~A~---erg~--~~~~~v~d~~~Lp--------- 281 (629)
.++. +|||+.+..|+=++.|++..... --+++-|.+..-+.... .+-. ...+...+....|
T Consensus 154 ~p~~--~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~ 231 (375)
T KOG2198|consen 154 KPGD--KVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGND 231 (375)
T ss_pred CCCC--eeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCch
Confidence 4445 99999999999999988864321 12456688876554443 2321 2222222222222
Q ss_pred CCCCCeeEEEe-----cCcc-cc--------cccC--------HHHHHHHHHhcccCCcEEEEEeCCCC
Q 006834 282 YPARAFDMAHC-----SGCL-IP--------WYMY--------DGLYLLEVDRVLRPGGYWILSGPPIH 328 (629)
Q Consensus 282 ~pd~sFDlV~~-----s~~L-~h--------~~~d--------~~~~L~el~RvLKPGG~liis~P~~~ 328 (629)
.....||-|+| .... .+ |... .-.+|..-.++||+||.++.++-..+
T Consensus 232 ~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLn 300 (375)
T KOG2198|consen 232 KEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLN 300 (375)
T ss_pred hhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCC
Confidence 23457999997 1111 00 1111 12578889999999999999986544
No 463
>PRK11524 putative methyltransferase; Provisional
Probab=81.63 E-value=2.8 Score=44.01 Aligned_cols=55 Identities=13% Similarity=0.071 Sum_probs=40.2
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER 266 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er 266 (629)
.+.+..++......+..|||--||+|+.+....+.+-.. .|+|++++.++.|++|
T Consensus 195 ~~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~lgR~~---IG~Ei~~~Y~~~a~~R 249 (284)
T PRK11524 195 EALLKRIILASSNPGDIVLDPFAGSFTTGAVAKASGRKF---IGIEINSEYIKMGLRR 249 (284)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHcCCCE---EEEeCCHHHHHHHHHH
Confidence 334444444333334489999999999888877777654 4559999999999988
No 464
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=81.56 E-value=1.5 Score=44.84 Aligned_cols=95 Identities=18% Similarity=0.210 Sum_probs=57.5
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEe--------EEEeecCcHHHHHHHHHcCCCeEEEEecCCCC--------CCCCCC
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTM--------SFARRDTHEAQVQFALERGVPAMIGVISSKRL--------PYPARA 286 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v--------~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~L--------p~pd~s 286 (629)
..+|+|+.+..|+|+..|.++-.... .|+++|+.+-+ --..+.-.++|+... -|..+.
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma------PI~GV~qlq~DIT~~stae~Ii~hfggek 115 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA------PIEGVIQLQGDITSASTAEAIIEHFGGEK 115 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC------ccCceEEeecccCCHhHHHHHHHHhCCCC
Confidence 45899999999999999987632200 15555664210 001234445555432 145568
Q ss_pred eeEEEecC-----cccccccCHH-----HHHHHHHhcccCCcEEEEE
Q 006834 287 FDMAHCSG-----CLIPWYMYDG-----LYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 287 FDlV~~s~-----~L~h~~~d~~-----~~L~el~RvLKPGG~liis 323 (629)
-|+|+|-. .+|.+.+..+ .+|.-...+|||||.|+--
T Consensus 116 AdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK 162 (294)
T KOG1099|consen 116 ADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK 162 (294)
T ss_pred ccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh
Confidence 99999933 3433332211 3566677899999999865
No 465
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=81.13 E-value=3.2 Score=37.34 Aligned_cols=85 Identities=25% Similarity=0.283 Sum_probs=57.6
Q ss_pred CCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCC---CC-C-CCCCCeeEEEecCcccccccCHHHH
Q 006834 232 GVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSK---RL-P-YPARAFDMAHCSGCLIPWYMYDGLY 306 (629)
Q Consensus 232 GtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~---~L-p-~pd~sFDlV~~s~~L~h~~~d~~~~ 306 (629)
|.|.++..+++..- ..++.+|.++.-++.+++.|....+...+.. .+ . ...+.+|+|+-.-. -...
T Consensus 1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g-------~~~~ 71 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG-------SGDT 71 (130)
T ss_dssp HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSS-------SHHH
T ss_pred ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecC-------cHHH
Confidence 45788888887533 3556679999999999998843333221110 01 1 23358999984321 2568
Q ss_pred HHHHHhcccCCcEEEEEeC
Q 006834 307 LLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 307 L~el~RvLKPGG~liis~P 325 (629)
+.+...+|+|||.+++.+-
T Consensus 72 ~~~~~~~l~~~G~~v~vg~ 90 (130)
T PF00107_consen 72 LQEAIKLLRPGGRIVVVGV 90 (130)
T ss_dssp HHHHHHHEEEEEEEEEESS
T ss_pred HHHHHHHhccCCEEEEEEc
Confidence 8999999999999999874
No 466
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=81.11 E-value=4.3 Score=42.11 Aligned_cols=133 Identities=14% Similarity=0.171 Sum_probs=70.4
Q ss_pred CCCeeEEEeecccchhHHhhhhC----C-CeEEEEecCCCCCCCchHHHHhhcc---cceec-cccccCCC------CCc
Q 006834 477 KGRYRNVMDMNAYLGGFAAAMSK----Y-PVWVMNVVPFHSNPDTLGAIYERGL---IGTYQ-DWCEAFST------YPR 541 (629)
Q Consensus 477 ~~~~R~vlD~~~g~Ggfaa~l~~----~-~v~~mnv~~~~~~~~~l~~~~ergl---i~~~~-~~~e~f~~------yp~ 541 (629)
...-++||.+|+++|=-|.+|+. . .|+++=.-|.-.. --.+.+.+-|+ |-+.+ +..+.++. +..
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~-~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~ 155 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYE-LGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHG 155 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHH-HHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCC
Confidence 34466899999988865555543 2 2433322221110 11223344565 33332 22232222 456
Q ss_pred ccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEe---------CH-----HHH--------HHHHHHHhcCCC
Q 006834 542 TYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRD---------TV-----EML--------VKIRSITEGMRW 599 (629)
Q Consensus 542 t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d---------~~-----~~~--------~~~~~~~~~l~w 599 (629)
+||+|=.++= +-.....+...-+.|||||.+|+-+ +. ... .-.+.+.+.=++
T Consensus 156 ~fD~iFiDad------K~~Y~~y~~~~l~ll~~GGviv~DNvl~~G~v~~~~~~~~~~~~~~~~~~ir~fn~~v~~d~~~ 229 (247)
T PLN02589 156 TFDFIFVDAD------KDNYINYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRI 229 (247)
T ss_pred cccEEEecCC------HHHhHHHHHHHHHhcCCCeEEEEcCCCCCCcccCccccchhhhHHHHHHHHHHHHHHHHhCCCE
Confidence 8999876332 2223445555568999999988742 10 111 112334555677
Q ss_pred eEEEeecCCCCCCCceEEEEEec
Q 006834 600 KSQIMDHESGPFNPEKILFAAKT 622 (629)
Q Consensus 600 ~~~~~~~e~~~~~~e~~l~~~K~ 622 (629)
++.+.-. .+.+++++|.
T Consensus 230 ~~~llPi------gDGl~l~~k~ 246 (247)
T PLN02589 230 EICMLPV------GDGITLCRRI 246 (247)
T ss_pred EEEEEEe------CCccEEEEEe
Confidence 7777643 3568888885
No 467
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=80.49 E-value=4.7 Score=42.62 Aligned_cols=104 Identities=13% Similarity=0.111 Sum_probs=64.1
Q ss_pred ccCCCCeeEEEeecccchhHHhhhhCCC-eEEEEecCCCCCCCchHHHHhhcccceeccccc-------------cCCCC
Q 006834 474 LFHKGRYRNVMDMNAYLGGFAAAMSKYP-VWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCE-------------AFSTY 539 (629)
Q Consensus 474 ~~~~~~~R~vlD~~~g~Ggfaa~l~~~~-v~~mnv~~~~~~~~~l~~~~ergli~~~~~~~e-------------~f~~y 539 (629)
.+..+..|.||=+|.|-||.++.+.+.+ |-=+-+|.+|.. =+.+.|..++..|.++. -...+
T Consensus 71 ~~ah~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~----Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~ 146 (282)
T COG0421 71 LLAHPNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPA----VIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC 146 (282)
T ss_pred hhhCCCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHH----HHHHHHHhccCcccccCCCceEEEeccHHHHHHhC
Confidence 3455666899999999999999998875 433334444433 24455666666653332 11226
Q ss_pred CcccceeeccccccccCCCcCH-HHHHHHHhhcccCCcEEEEE
Q 006834 540 PRTYDLIHASGVFSIYQDRCDI-TNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 540 p~t~Dl~H~~~~fs~~~~~c~~-~~~l~e~dRiLrPgG~~i~~ 581 (629)
+++||+|=.+.-=-...+.-.. +.++....|.|+|+|.++..
T Consensus 147 ~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 147 EEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 6789987652211000000011 45777789999999999997
No 468
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=80.31 E-value=6.4 Score=43.58 Aligned_cols=120 Identities=22% Similarity=0.273 Sum_probs=73.5
Q ss_pred EEEeecccchhHHhhhhCCCe-EEEEecCCCCCCCchHHHHhh----cccceecccc--ccCCCCC---c---ccceeec
Q 006834 482 NVMDMNAYLGGFAAAMSKYPV-WVMNVVPFHSNPDTLGAIYER----GLIGTYQDWC--EAFSTYP---R---TYDLIHA 548 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~~v-~~mnv~~~~~~~~~l~~~~er----gli~~~~~~~--e~f~~yp---~---t~Dl~H~ 548 (629)
.|||+=|.+|||+-+.+.-+- -|++ +|.+..-|+.+.+- |+-+.-|.|- ..|.-+- + +||+|=.
T Consensus 220 rvLNlFsYTGgfSv~Aa~gGA~~vt~---VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 220 RVLNLFSYTGGFSVHAALGGASEVTS---VDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred eEEEecccCcHHHHHHHhcCCCceEE---EeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 499999999999988776654 3344 45554455555442 4434445443 2343333 3 9999876
Q ss_pred cc-cccccCCC-----cCHHHHHHHHhhcccCCcEEEEEeC------HHHHHHHHHHHhcCCCeEEEe
Q 006834 549 SG-VFSIYQDR-----CDITNILLEMDRILRPEGTVIFRDT------VEMLVKIRSITEGMRWKSQIM 604 (629)
Q Consensus 549 ~~-~fs~~~~~-----c~~~~~l~e~dRiLrPgG~~i~~d~------~~~~~~~~~~~~~l~w~~~~~ 604 (629)
+= -|+..+.. =+..+++...-+||+|||.+++... ...+..|.+-+..+.=..++.
T Consensus 297 DPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~~a~~~~~~~~~~~ 364 (393)
T COG1092 297 DPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIARAAAAAGRRAQEI 364 (393)
T ss_pred CCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHHHHHHHHhcCCcEEEe
Confidence 42 24433322 1334588999999999999999733 334556666666664444444
No 469
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=80.31 E-value=17 Score=36.76 Aligned_cols=138 Identities=17% Similarity=0.279 Sum_probs=94.2
Q ss_pred ccCCCCeeEEEeecccchhHHhhhhC---CC-eEEEEecCCCCCCCchHHHHhhcc-cceeccccccCCCCCccccee--
Q 006834 474 LFHKGRYRNVMDMNAYLGGFAAAMSK---YP-VWVMNVVPFHSNPDTLGAIYERGL-IGTYQDWCEAFSTYPRTYDLI-- 546 (629)
Q Consensus 474 ~~~~~~~R~vlD~~~g~Ggfaa~l~~---~~-v~~mnv~~~~~~~~~l~~~~ergl-i~~~~~~~e~f~~yp~t~Dl~-- 546 (629)
+|+.|+- ||=+||-.|.-..++.+ .+ |..+-++|.-.. ..|.++-+|-- +.++-| -.+|.+|-.+
T Consensus 73 pi~~g~~--VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~r-eLl~~a~~R~Ni~PIL~D-----A~~P~~Y~~~Ve 144 (231)
T COG1889 73 PIKEGSK--VLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMR-ELLDVAEKRPNIIPILED-----ARKPEKYRHLVE 144 (231)
T ss_pred CcCCCCE--EEEeeccCCCcHhHHHhccCCCcEEEEEecchhHH-HHHHHHHhCCCceeeecc-----cCCcHHhhhhcc
Confidence 4666765 99999999999999865 35 789999998876 88888888864 777765 4577666542
Q ss_pred eccccccccCCCcCHHHHHHHHhhcccCCcEEEEE----------eCHHHHH-HHHHHHhcCCCeEE-EeecCCCCCCCc
Q 006834 547 HASGVFSIYQDRCDITNILLEMDRILRPEGTVIFR----------DTVEMLV-KIRSITEGMRWKSQ-IMDHESGPFNPE 614 (629)
Q Consensus 547 H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~----------d~~~~~~-~~~~~~~~l~w~~~-~~~~e~~~~~~e 614 (629)
|.+.+|..-..+-..+=+..-++.-|++||++++. |+.++.. .++++-. =..++. ..+.| |.++.
T Consensus 145 ~VDviy~DVAQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~-~~f~i~e~~~Le--Pye~D 221 (231)
T COG1889 145 KVDVIYQDVAQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEE-GGFEILEVVDLE--PYEKD 221 (231)
T ss_pred cccEEEEecCCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHh-cCceeeEEeccC--Ccccc
Confidence 34555554444445555778889999999999885 4455544 4444433 233433 34444 66677
Q ss_pred eEEEEEec
Q 006834 615 KILFAAKT 622 (629)
Q Consensus 615 ~~l~~~K~ 622 (629)
-.+|..|.
T Consensus 222 H~~i~~~~ 229 (231)
T COG1889 222 HALIVAKY 229 (231)
T ss_pred eEEEEEee
Confidence 78877663
No 470
>PRK11524 putative methyltransferase; Provisional
Probab=79.81 E-value=1.5 Score=46.20 Aligned_cols=54 Identities=17% Similarity=0.142 Sum_probs=35.9
Q ss_pred EEEEecCCCC--CCCCCCeeEEEecCcccc----------cc-----cCHHHHHHHHHhcccCCcEEEEEe
Q 006834 271 MIGVISSKRL--PYPARAFDMAHCSGCLIP----------WY-----MYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 271 ~~~v~d~~~L--p~pd~sFDlV~~s~~L~h----------~~-----~d~~~~L~el~RvLKPGG~liis~ 324 (629)
.+..+|.... .+++++||+|++..-+.- +. .....++.++.|+|||||.+++..
T Consensus 10 ~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 10 TIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred EEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 4555665443 356789999999654310 00 001358899999999999999863
No 471
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=79.56 E-value=3.3 Score=41.28 Aligned_cols=83 Identities=20% Similarity=0.230 Sum_probs=54.2
Q ss_pred eEEEeecccchhHHh--hhhC-CCeEEEEecCCCCCCCchHHHHhhcccceeccccccCCCCCcccceeeccccccccCC
Q 006834 481 RNVMDMNAYLGGFAA--AMSK-YPVWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAFSTYPRTYDLIHASGVFSIYQD 557 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa--~l~~-~~v~~mnv~~~~~~~~~l~~~~ergli~~~~~~~e~f~~yp~t~Dl~H~~~~fs~~~~ 557 (629)
++|+|.|||+|.+|- +|.. .-|.++-+=|.-. ....-+.++ |-|-+--.|...+.+..-+|.+-.+-=|.....
T Consensus 47 ~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~--ei~r~N~~~-l~g~v~f~~~dv~~~~~~~dtvimNPPFG~~~r 123 (198)
T COG2263 47 KTVLDLGAGTGILAIGAALLGASRVLAVDIDPEAL--EIARANAEE-LLGDVEFVVADVSDFRGKFDTVIMNPPFGSQRR 123 (198)
T ss_pred CEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHH--HHHHHHHHh-hCCceEEEEcchhhcCCccceEEECCCCccccc
Confidence 359999999997754 4433 4566655444322 244445566 335444445667778888998777777887777
Q ss_pred CcCHHHHHH
Q 006834 558 RCDITNILL 566 (629)
Q Consensus 558 ~c~~~~~l~ 566 (629)
+-|.++++.
T Consensus 124 haDr~Fl~~ 132 (198)
T COG2263 124 HADRPFLLK 132 (198)
T ss_pred cCCHHHHHH
Confidence 788888663
No 472
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=79.50 E-value=16 Score=38.85 Aligned_cols=87 Identities=20% Similarity=0.123 Sum_probs=55.8
Q ss_pred CeEEEeCCC-CchHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCCCeeEEEecCccccccc
Q 006834 224 RTAVDTGCG-VASWGAYLLKR-DILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCSGCLIPWYM 301 (629)
Q Consensus 224 ~~VLDIGCG-tG~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~ 301 (629)
.+||=.|+| .|.++..+++. |. .++.++.+++-.+.|++.|....+. ... ...+.+|+++-...
T Consensus 167 ~~VlV~G~g~iG~~a~~~a~~~G~---~vi~~~~~~~~~~~a~~~Ga~~vi~---~~~--~~~~~~d~~i~~~~------ 232 (329)
T TIGR02822 167 GRLGLYGFGGSAHLTAQVALAQGA---TVHVMTRGAAARRLALALGAASAGG---AYD--TPPEPLDAAILFAP------ 232 (329)
T ss_pred CEEEEEcCCHHHHHHHHHHHHCCC---eEEEEeCChHHHHHHHHhCCceecc---ccc--cCcccceEEEECCC------
Confidence 389988875 45555556554 44 3455688888899999888643221 111 11245787653221
Q ss_pred CHHHHHHHHHhcccCCcEEEEEeC
Q 006834 302 YDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 302 d~~~~L~el~RvLKPGG~liis~P 325 (629)
. ...+....++|++||.+++.+.
T Consensus 233 ~-~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 233 A-GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred c-HHHHHHHHHhhCCCcEEEEEec
Confidence 1 2468888999999999998763
No 473
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=79.47 E-value=32 Score=35.12 Aligned_cols=128 Identities=15% Similarity=0.117 Sum_probs=77.7
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC--CeEEEEecCCCCCC
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV--PAMIGVISSKRLPY 282 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~~~Lp~ 282 (629)
+..++++++. ..++.||||--|.+..+|.+.+... .++..|+++..++.|.+. +. .+....+|... ++
T Consensus 7 L~~va~~V~~----~~~iaDIGsDHAYLp~~Lv~~~~~~-~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~-~l 80 (226)
T COG2384 7 LTTVANLVKQ----GARIADIGSDHAYLPIYLVKNNPAS-TAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLA-VL 80 (226)
T ss_pred HHHHHHHHHc----CCceeeccCchhHhHHHHHhcCCcc-eEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcc-cc
Confidence 4556666544 2259999999999999999988644 345669999999998754 22 23344444421 23
Q ss_pred C-CCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeCCCCccccccCccCcchhhhhHHHHHHHHHHHhccee
Q 006834 283 P-ARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIEDIAKRLCWKK 361 (629)
Q Consensus 283 p-d~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P~~~w~~~~~~w~~~~e~l~~~~~~ie~l~~~l~w~~ 361 (629)
. +..+|+|+...+=-. -...+|.+-..-|+-=-+|++. |+.+ ...+++......|.-
T Consensus 81 ~~~d~~d~ivIAGMGG~---lI~~ILee~~~~l~~~~rlILQ-Pn~~------------------~~~LR~~L~~~~~~I 138 (226)
T COG2384 81 ELEDEIDVIVIAGMGGT---LIREILEEGKEKLKGVERLILQ-PNIH------------------TYELREWLSANSYEI 138 (226)
T ss_pred CccCCcCEEEEeCCcHH---HHHHHHHHhhhhhcCcceEEEC-CCCC------------------HHHHHHHHHhCCcee
Confidence 3 447998886543201 1245666666666533345554 3221 123666777777766
Q ss_pred ecc
Q 006834 362 LIE 364 (629)
Q Consensus 362 v~~ 364 (629)
..+
T Consensus 139 ~~E 141 (226)
T COG2384 139 KAE 141 (226)
T ss_pred eee
Confidence 543
No 474
>PRK13699 putative methylase; Provisional
Probab=79.23 E-value=3.6 Score=41.94 Aligned_cols=41 Identities=15% Similarity=-0.031 Sum_probs=34.3
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER 266 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er 266 (629)
+..|||--||+|+.+....+.+-.. .|+|++++..+.|.+|
T Consensus 164 g~~vlDpf~Gsgtt~~aa~~~~r~~---~g~e~~~~y~~~~~~r 204 (227)
T PRK13699 164 NAIVLDPFAGSGSTCVAALQSGRRY---IGIELLEQYHRAGQQR 204 (227)
T ss_pred CCEEEeCCCCCCHHHHHHHHcCCCE---EEEecCHHHHHHHHHH
Confidence 4489999999999988888877654 4559999999999877
No 475
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=78.72 E-value=3.7 Score=42.42 Aligned_cols=41 Identities=12% Similarity=0.344 Sum_probs=28.2
Q ss_pred cccceeecccccc---ccCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006834 541 RTYDLIHASGVFS---IYQDRCDITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 541 ~t~Dl~H~~~~fs---~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
+-||+|-|..|=- +-.+.-.+-.+|--+-|.|+|||++|+-
T Consensus 165 ~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 165 PEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 4578766633311 1123345777899999999999999995
No 476
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=78.54 E-value=7.2 Score=42.58 Aligned_cols=97 Identities=18% Similarity=0.156 Sum_probs=69.1
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc---C--CCeEEEEecCCCCCCC-CCCeeEEEecCcc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER---G--VPAMIGVISSKRLPYP-ARAFDMAHCSGCL 296 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er---g--~~~~~~v~d~~~Lp~p-d~sFDlV~~s~~L 296 (629)
+.+|||.=+|+|.=+...+.....+ .++.-|+|+.+++.++++ + .+......|+..+-.. ...||+|=.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~-~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDi---- 127 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVV-KVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDI---- 127 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCcc-EEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEec----
Confidence 4589999999998887777654333 567789999999999875 2 2334444455444322 367888752
Q ss_pred cccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 297 IPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 297 ~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
.++- .|..++....+.+|.||++.++..
T Consensus 128 DPFG-SPaPFlDaA~~s~~~~G~l~vTAT 155 (380)
T COG1867 128 DPFG-SPAPFLDAALRSVRRGGLLCVTAT 155 (380)
T ss_pred CCCC-CCchHHHHHHHHhhcCCEEEEEec
Confidence 2333 467899999999999999999764
No 477
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=78.53 E-value=23 Score=36.87 Aligned_cols=100 Identities=17% Similarity=0.169 Sum_probs=63.4
Q ss_pred CCeEEEeCCCCchHHHHHHHc----CCcEeEEEeecCcHHHHHHHHHc----CC--CeEEEEecC----CCCCCCCCCee
Q 006834 223 IRTAVDTGCGVASWGAYLLKR----DILTMSFARRDTHEAQVQFALER----GV--PAMIGVISS----KRLPYPARAFD 288 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~----g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~----~~Lp~pd~sFD 288 (629)
..+.+|+|.|+..=++.|+.. +. ...+.++|+|+..++...+. .+ ++.-..++. ..+| ..+.==
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~-~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~-~~~~Rl 156 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGS-LLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELP-RGGRRL 156 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCC-cceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhccc-CCCeEE
Confidence 348999999999877777653 33 34678999999888754432 23 332233332 2223 122223
Q ss_pred EEEecCcccccccCH-HHHHHHHHhcccCCcEEEEEe
Q 006834 289 MAHCSGCLIPWYMYD-GLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 289 lV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~liis~ 324 (629)
+++....+-.+.+++ ..+|..+...|+||-+|++-+
T Consensus 157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 157 FVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred EEEecccccCCChHHHHHHHHHHHhcCCCcceEEEec
Confidence 344455555555443 469999999999999999965
No 478
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=78.47 E-value=12 Score=42.79 Aligned_cols=97 Identities=12% Similarity=0.092 Sum_probs=62.7
Q ss_pred CCeEEEeCCCC-chHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCC-----------CC--------
Q 006834 223 IRTAVDTGCGV-ASWGAYLLKR-DILTMSFARRDTHEAQVQFALERGVPAMIGVISSKR-----------LP-------- 281 (629)
Q Consensus 223 ~~~VLDIGCGt-G~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~-----------Lp-------- 281 (629)
+.+|+=+|||. |..+...++. |. .+..+|.+++.++.+++.|.. +...+..+ +.
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA---~V~a~D~~~~rle~aeslGA~--~v~i~~~e~~~~~~gya~~~s~~~~~~~~ 239 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGA---IVRAFDTRPEVAEQVESMGAE--FLELDFEEEGGSGDGYAKVMSEEFIKAEM 239 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHcCCe--EEEeccccccccccchhhhcchhHHHHHH
Confidence 55999999996 5555555543 54 356679999999999987754 22111110 00
Q ss_pred --CCC--CCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 282 --YPA--RAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 282 --~pd--~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
+.. +.+|+|+..-.. +-...+..+.+++.+.+||||.++..+-
T Consensus 240 ~~~~~~~~gaDVVIetag~-pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 240 ALFAEQAKEVDIIITTALI-PGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHhccCCCCEEEECCCC-CcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 011 469999976543 2221344446999999999999998753
No 479
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=78.30 E-value=10 Score=40.53 Aligned_cols=93 Identities=24% Similarity=0.231 Sum_probs=56.5
Q ss_pred CCeEEEeCCC-CchHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCC--CCCCCCeeEEEecCcccc
Q 006834 223 IRTAVDTGCG-VASWGAYLLKR-DILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRL--PYPARAFDMAHCSGCLIP 298 (629)
Q Consensus 223 ~~~VLDIGCG-tG~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~L--p~pd~sFDlV~~s~~L~h 298 (629)
+.+||=+|+| .|.++..+++. |..++.+...|.++.-++.+++.|... .......+ ....+.||+|+-.-.
T Consensus 173 g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~--v~~~~~~~~~~~~~~~~d~vid~~g--- 247 (355)
T cd08230 173 PRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATY--VNSSKTPVAEVKLVGEFDLIIEATG--- 247 (355)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE--ecCCccchhhhhhcCCCCEEEECcC---
Confidence 3488888987 46677767664 454433322334788888888877532 11111110 001246898885331
Q ss_pred cccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 299 WYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 299 ~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
....+.+..++|++||.+++.+
T Consensus 248 ----~~~~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 248 ----VPPLAFEALPALAPNGVVILFG 269 (355)
T ss_pred ----CHHHHHHHHHHccCCcEEEEEe
Confidence 1246788999999999998875
No 480
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=77.74 E-value=1.8 Score=45.78 Aligned_cols=43 Identities=21% Similarity=0.417 Sum_probs=35.2
Q ss_pred cccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCH
Q 006834 541 RTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTV 584 (629)
Q Consensus 541 ~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~ 584 (629)
..||+|-|-.||... +.-....++..+.+.|+|||++++....
T Consensus 222 ~~fD~I~cRNvliyF-~~~~~~~vl~~l~~~L~pgG~L~lG~sE 264 (287)
T PRK10611 222 GPFDAIFCRNVMIYF-DKTTQERILRRFVPLLKPDGLLFAGHSE 264 (287)
T ss_pred CCcceeeHhhHHhcC-CHHHHHHHHHHHHHHhCCCcEEEEeCcc
Confidence 789999998888644 3345678999999999999999987644
No 481
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=77.24 E-value=2 Score=43.06 Aligned_cols=93 Identities=19% Similarity=0.271 Sum_probs=46.6
Q ss_pred ccCCCCeeEEEeecccchhHHhhhhC--CC--eEEEEecCCCCCCCchHHHHhhc-c---cceeccccccCCCCCcccce
Q 006834 474 LFHKGRYRNVMDMNAYLGGFAAAMSK--YP--VWVMNVVPFHSNPDTLGAIYERG-L---IGTYQDWCEAFSTYPRTYDL 545 (629)
Q Consensus 474 ~~~~~~~R~vlD~~~g~Ggfaa~l~~--~~--v~~mnv~~~~~~~~~l~~~~erg-l---i~~~~~~~e~f~~yp~t~Dl 545 (629)
.+..+. +|+||-||.|.|+-.+++ +. |++.=+-|..- ..|..+.++. + |-.++.=|..|.. ...+|-
T Consensus 98 ~v~~~e--~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~--~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~dr 172 (200)
T PF02475_consen 98 LVKPGE--VVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAV--EYLKENIRLNKVENRIEVINGDAREFLP-EGKFDR 172 (200)
T ss_dssp C--TT---EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHH--HHHHHHHHHTT-TTTEEEEES-GGG----TT-EEE
T ss_pred cCCcce--EEEEccCCccHHHHHHhhhcCccEEEEecCCHHHH--HHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCE
Confidence 355665 599999999999988877 43 33333322211 2333333332 2 3334421333333 578886
Q ss_pred eeccccccccCCCcCHHHHHHHHhhcccCCcEE
Q 006834 546 IHASGVFSIYQDRCDITNILLEMDRILRPEGTV 578 (629)
Q Consensus 546 ~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~ 578 (629)
+.+ .+...+ ..+|-+.-+++|+||.+
T Consensus 173 vim-----~lp~~~--~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 173 VIM-----NLPESS--LEFLDAALSLLKEGGII 198 (200)
T ss_dssp EEE-------TSSG--GGGHHHHHHHEEEEEEE
T ss_pred EEE-----CChHHH--HHHHHHHHHHhcCCcEE
Confidence 554 122121 24777788999999976
No 482
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=77.16 E-value=5.6 Score=40.91 Aligned_cols=86 Identities=13% Similarity=0.096 Sum_probs=46.5
Q ss_pred HHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHH---Hc---C--------CCeEEEEe
Q 006834 210 DNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFAL---ER---G--------VPAMIGVI 275 (629)
Q Consensus 210 ~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~---er---g--------~~~~~~v~ 275 (629)
+.|.+.+....+...+|||.=+|-|+-+..|+..|..+ ++++-|+-+....+ ++ . ..+.+...
T Consensus 63 ~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~~V---~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~ 139 (234)
T PF04445_consen 63 DPLAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGCKV---TGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHG 139 (234)
T ss_dssp SHHHHHTT-BTTB---EEETT-TTSHHHHHHHHHT--E---EEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES
T ss_pred cHHHHHhCCCCCCCCEEEECCCcchHHHHHHHccCCeE---EEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcC
Confidence 34556666555544589999999999999999888754 55588876544332 22 1 13566776
Q ss_pred cCCC-CCCCCCCeeEEEecCcccc
Q 006834 276 SSKR-LPYPARAFDMAHCSGCLIP 298 (629)
Q Consensus 276 d~~~-Lp~pd~sFDlV~~s~~L~h 298 (629)
|... |..++++||+|++-..+.+
T Consensus 140 d~~~~L~~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 140 DALEYLRQPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp -CCCHCCCHSS--SEEEE--S---
T ss_pred CHHHHHhhcCCCCCEEEECCCCCC
Confidence 6544 4556889999999777644
No 483
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.70 E-value=18 Score=34.85 Aligned_cols=82 Identities=9% Similarity=-0.025 Sum_probs=51.7
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc------CCCeEEEEecCCCCCC
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER------GVPAMIGVISSKRLPY 282 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er------g~~~~~~v~d~~~Lp~ 282 (629)
++.+..+++..+ ..+.+|+|.|.|+.....++.+.. .-+|+++++-.+..++-+ +....|..-|.-+..+
T Consensus 61 v~nVLSll~~n~--~GklvDlGSGDGRiVlaaar~g~~--~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl 136 (199)
T KOG4058|consen 61 VENVLSLLRGNP--KGKLVDLGSGDGRIVLAAARCGLR--PAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDL 136 (199)
T ss_pred HHHHHHHccCCC--CCcEEeccCCCceeehhhhhhCCC--cCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccc
Confidence 334444444332 247999999999998888888732 235669999999887743 2345555555555555
Q ss_pred CCCCeeEEEecC
Q 006834 283 PARAFDMAHCSG 294 (629)
Q Consensus 283 pd~sFDlV~~s~ 294 (629)
.+-.+-+|+-..
T Consensus 137 ~dy~~vviFgae 148 (199)
T KOG4058|consen 137 RDYRNVVIFGAE 148 (199)
T ss_pred cccceEEEeehH
Confidence 554555555433
No 484
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=76.59 E-value=84 Score=32.61 Aligned_cols=96 Identities=17% Similarity=0.082 Sum_probs=50.7
Q ss_pred CCCeEEEeCCCCch-HHHHHHHcCCcEeEEEeecCcHHHHHHHH----HcCCCeEEEEecCCC-CCCC-CCCeeEEEecC
Q 006834 222 NIRTAVDTGCGVAS-WGAYLLKRDILTMSFARRDTHEAQVQFAL----ERGVPAMIGVISSKR-LPYP-ARAFDMAHCSG 294 (629)
Q Consensus 222 ~~~~VLDIGCGtG~-~a~~La~~g~~~v~i~gvDiS~~~i~~A~----erg~~~~~~v~d~~~-Lp~p-d~sFDlV~~s~ 294 (629)
.+++||=+|=..-. ++..|... . ..|+-+|+++..+++.. +.+.++.....|... +|-. .++||++++-.
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~~-~--~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDP 120 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTGL-P--KRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDP 120 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT-----SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE--
T ss_pred cCCEEEEEcCCcHHHHHHHhhCC-C--CeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCC
Confidence 35689999976653 33333222 2 25677899999998765 457788887777643 3421 58999999866
Q ss_pred cccccccC-HHHHHHHHHhcccCCc-EEEEE
Q 006834 295 CLIPWYMY-DGLYLLEVDRVLRPGG-YWILS 323 (629)
Q Consensus 295 ~L~h~~~d-~~~~L~el~RvLKPGG-~liis 323 (629)
. +..+ ...++......||.-| ..++.
T Consensus 121 P---yT~~G~~LFlsRgi~~Lk~~g~~gy~~ 148 (243)
T PF01861_consen 121 P---YTPEGLKLFLSRGIEALKGEGCAGYFG 148 (243)
T ss_dssp ----SSHHHHHHHHHHHHHTB-STT-EEEEE
T ss_pred C---CCHHHHHHHHHHHHHHhCCCCceEEEE
Confidence 3 3322 3468889999998766 44443
No 485
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=76.48 E-value=9.9 Score=39.98 Aligned_cols=44 Identities=23% Similarity=0.416 Sum_probs=34.5
Q ss_pred CHHHHHHHHhhcccCCcEEEE--------EeC-------HH-HHHHHHHHHhcCCCeEEE
Q 006834 560 DITNILLEMDRILRPEGTVIF--------RDT-------VE-MLVKIRSITEGMRWKSQI 603 (629)
Q Consensus 560 ~~~~~l~e~dRiLrPgG~~i~--------~d~-------~~-~~~~~~~~~~~l~w~~~~ 603 (629)
++-+.|..+.++|||||++|= .+. ++ .++.|+.+++.+-|+...
T Consensus 180 Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~ 239 (270)
T PF07942_consen 180 NIIEYIETIEHLLKPGGYWINFGPLLYHFEPMSIPNEMSVELSLEEIKELIEKLGFEIEK 239 (270)
T ss_pred HHHHHHHHHHHHhccCCEEEecCCccccCCCCCCCCCcccCCCHHHHHHHHHHCCCEEEE
Confidence 456789999999999997663 233 33 389999999999999864
No 486
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=75.38 E-value=21 Score=35.48 Aligned_cols=93 Identities=22% Similarity=0.165 Sum_probs=57.4
Q ss_pred CCeEEEeCCCC-chHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCC----CCCCCCeeEEEecCcc
Q 006834 223 IRTAVDTGCGV-ASWGAYLLKR-DILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRL----PYPARAFDMAHCSGCL 296 (629)
Q Consensus 223 ~~~VLDIGCGt-G~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~L----p~pd~sFDlV~~s~~L 296 (629)
+.+||..|+|. |..+..+++. +. .+..++.+++..+.+++.+....+...+.... ....+.+|+|+....-
T Consensus 135 ~~~vli~g~~~~G~~~~~~a~~~g~---~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~ 211 (271)
T cd05188 135 GDTVLVLGAGGVGLLAAQLAKAAGA---RVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGG 211 (271)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC---eEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCC
Confidence 34899999985 6666666654 43 44556888888888877653221111100000 1124579999853311
Q ss_pred cccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 297 IPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 297 ~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
...+..+.+.|+++|.++..+.
T Consensus 212 -------~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 212 -------PETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred -------HHHHHHHHHhcccCCEEEEEcc
Confidence 1457778889999999998754
No 487
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=74.91 E-value=7.7 Score=44.16 Aligned_cols=115 Identities=14% Similarity=0.095 Sum_probs=77.5
Q ss_pred HHHHHHhhcCccCC-CCCeEEEeCCCCchHHHHHHHc---CCcEeEEEeecCcHHHHHHHHHcC-----CCeEEEEecCC
Q 006834 208 YIDNINELIPLTGG-NIRTAVDTGCGVASWGAYLLKR---DILTMSFARRDTHEAQVQFALERG-----VPAMIGVISSK 278 (629)
Q Consensus 208 ~i~~I~~lL~~~~g-~~~~VLDIGCGtG~~a~~La~~---g~~~v~i~gvDiS~~~i~~A~erg-----~~~~~~v~d~~ 278 (629)
....+.+..+.... ....|+=+|.|-|-+....++. -.+.+.+++++-++.++...+.++ ..+.++..|+.
T Consensus 352 i~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR 431 (649)
T KOG0822|consen 352 ILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMR 431 (649)
T ss_pred HHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEecccc
Confidence 34444444443222 2446788999999776655432 234667888899999988776553 45788888999
Q ss_pred CCCCCCCCeeEEEecCcccccccC--HHHHHHHHHhcccCCcEEEEE
Q 006834 279 RLPYPARAFDMAHCSGCLIPWYMY--DGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 279 ~Lp~pd~sFDlV~~s~~L~h~~~d--~~~~L~el~RvLKPGG~liis 323 (629)
.++-|..+.|++++- .|-.+.++ -.+.|.-+.+.|||.|..|=.
T Consensus 432 ~w~ap~eq~DI~VSE-LLGSFGDNELSPECLDG~q~fLkpdgIsIP~ 477 (649)
T KOG0822|consen 432 KWNAPREQADIIVSE-LLGSFGDNELSPECLDGAQKFLKPDGISIPS 477 (649)
T ss_pred ccCCchhhccchHHH-hhccccCccCCHHHHHHHHhhcCCCceEccc
Confidence 888556899999962 22223322 246899999999999877543
No 488
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=74.32 E-value=17 Score=39.29 Aligned_cols=95 Identities=13% Similarity=0.084 Sum_probs=61.5
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCC---------CCCCCCeeEEEec
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRL---------PYPARAFDMAHCS 293 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~L---------p~pd~sFDlV~~s 293 (629)
+.+||=+|+|.=.+..-+..+..-+..++.+|+++.-++.|++-|..+.......... -+....||+.+-.
T Consensus 170 Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~dC 249 (354)
T KOG0024|consen 170 GSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVTFDC 249 (354)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeEEEc
Confidence 3499999999644444444443333466778999999999999776544432221111 1223458888854
Q ss_pred CcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 294 GCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 294 ~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
..+ +..++.....||+||.+++++
T Consensus 250 sG~-------~~~~~aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 250 SGA-------EVTIRAAIKATRSGGTVVLVG 273 (354)
T ss_pred cCc-------hHHHHHHHHHhccCCEEEEec
Confidence 433 345677788999999988885
No 489
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=74.27 E-value=25 Score=36.81 Aligned_cols=91 Identities=14% Similarity=0.109 Sum_probs=55.8
Q ss_pred CeEEEeCCC-CchHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCCCeeEEEecCccccccc
Q 006834 224 RTAVDTGCG-VASWGAYLLKR-DILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCSGCLIPWYM 301 (629)
Q Consensus 224 ~~VLDIGCG-tG~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~ 301 (629)
.+||-+|+| .|..+..+++. |. .++.++.+++..+.+++.+....+.........-..+.+|+++....
T Consensus 164 ~~vlI~g~g~iG~~~~~~a~~~G~---~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~------ 234 (330)
T cd08245 164 ERVAVLGIGGLGHLAVQYARAMGF---ETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVV------ 234 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCC------
Confidence 478888887 66666666664 44 34555888888888876663322211110000001246898885321
Q ss_pred CHHHHHHHHHhcccCCcEEEEEe
Q 006834 302 YDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 302 d~~~~L~el~RvLKPGG~liis~ 324 (629)
....+.++.+.|+++|.++..+
T Consensus 235 -~~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 235 -SGAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred -cHHHHHHHHHhcccCCEEEEEC
Confidence 1346788899999999998875
No 490
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=74.14 E-value=27 Score=34.86 Aligned_cols=125 Identities=15% Similarity=0.192 Sum_probs=69.0
Q ss_pred eeEEEeecccchhHHhhhhCC---CeEEE--EecCCCCCCCchHHHHhhcc-cceec-cccccCCCCCcccceeec----
Q 006834 480 YRNVMDMNAYLGGFAAAMSKY---PVWVM--NVVPFHSNPDTLGAIYERGL-IGTYQ-DWCEAFSTYPRTYDLIHA---- 548 (629)
Q Consensus 480 ~R~vlD~~~g~Ggfaa~l~~~---~v~~m--nv~~~~~~~~~l~~~~ergl-i~~~~-~~~e~f~~yp~t~Dl~H~---- 548 (629)
...+|++|||.|-.-+.|++. ++..| -+.|.-.. .|+..+.-.+. |-++. |.-..+.. ++.|+|--
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~-~Tl~TA~~n~~~~~~V~tdl~~~l~~--~~VDvLvfNPPY 120 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALE-ATLETARCNRVHIDVVRTDLLSGLRN--ESVDVLVFNPPY 120 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHH-HHHHHHHhcCCccceeehhHHhhhcc--CCccEEEECCCc
Confidence 556999999999999888775 44333 23333222 45555544443 23222 33222222 55554322
Q ss_pred ----------cccccccC----CCcCHHHHHHHHhhcccCCcEEEEEeC-HHHHHHHHHHHhcCCCeEEEeecC
Q 006834 549 ----------SGVFSIYQ----DRCDITNILLEMDRILRPEGTVIFRDT-VEMLVKIRSITEGMRWKSQIMDHE 607 (629)
Q Consensus 549 ----------~~~fs~~~----~~c~~~~~l~e~dRiLrPgG~~i~~d~-~~~~~~~~~~~~~l~w~~~~~~~e 607 (629)
.++=+.|- .|--+..+|--++-||-|-|.+++--- .....+|-++++.-.|.+++....
T Consensus 121 Vpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~g~~~~~~~~R 194 (209)
T KOG3191|consen 121 VPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKKGYGVRIAMQR 194 (209)
T ss_pred CcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhhcccceeEEEEE
Confidence 22222222 122244577778899999999998421 122334555777888888765443
No 491
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=74.13 E-value=34 Score=35.25 Aligned_cols=142 Identities=14% Similarity=0.115 Sum_probs=80.1
Q ss_pred chhhHHHHHHHHHHHHHhhcccCCCCeeEEEeecccchhHHhhhhCCC-eEEEEecCCCCCCCchHHHHhhcccc-----
Q 006834 454 LREDNELWKDRMTYYKKIDGLFHKGRYRNVMDMNAYLGGFAAAMSKYP-VWVMNVVPFHSNPDTLGAIYERGLIG----- 527 (629)
Q Consensus 454 f~~d~~~w~~~v~~y~~~~~~~~~~~~R~vlD~~~g~Ggfaa~l~~~~-v~~mnv~~~~~~~~~l~~~~ergli~----- 527 (629)
.+.|....++.+.+..-+. ....++||=+|.|-|+.++.|.+.+ +--+-+|..|. ..++++.+ .++
T Consensus 55 ~e~de~~y~e~l~h~~~~~----~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~--~Vv~~a~~--~f~~~~~~ 126 (246)
T PF01564_consen 55 SERDEFIYHEMLVHPPLLL----HPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDP--EVVELARK--YFPEFSEG 126 (246)
T ss_dssp ETTTHHHHHHHHHHHHHHH----SSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-H--HHHHHHHH--HTHHHHTT
T ss_pred EEechHHHHHHHhhhHhhc----CCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecCh--HHHHHHHH--hchhhccc
Confidence 4455555555555444332 2367889999999999999999876 53344555554 35555433 222
Q ss_pred -------eec-cccccCCCCCc-ccceeeccccccccC-CCcCHHHHHHHHhhcccCCcEEEEEe-----CHHHHHHHHH
Q 006834 528 -------TYQ-DWCEAFSTYPR-TYDLIHASGVFSIYQ-DRCDITNILLEMDRILRPEGTVIFRD-----TVEMLVKIRS 592 (629)
Q Consensus 528 -------~~~-~~~e~f~~yp~-t~Dl~H~~~~fs~~~-~~c~~~~~l~e~dRiLrPgG~~i~~d-----~~~~~~~~~~ 592 (629)
+++ |=-+-+...++ +||+|=.+..-.... ..---...+..+.|.|+|||.+++.- ..+....+.+
T Consensus 127 ~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~ 206 (246)
T PF01564_consen 127 LDDPRVRIIIGDGRKFLKETQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILK 206 (246)
T ss_dssp GGSTTEEEEESTHHHHHHTSSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHH
T ss_pred cCCCceEEEEhhhHHHHHhccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHH
Confidence 222 11122345676 999876532211100 01112568888999999999999862 2344555666
Q ss_pred HHhcCCCeEEE
Q 006834 593 ITEGMRWKSQI 603 (629)
Q Consensus 593 ~~~~l~w~~~~ 603 (629)
.++..--.+..
T Consensus 207 tl~~~F~~v~~ 217 (246)
T PF01564_consen 207 TLRSVFPQVKP 217 (246)
T ss_dssp HHHTTSSEEEE
T ss_pred HHHHhCCceEE
Confidence 66665555553
No 492
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=74.10 E-value=26 Score=36.62 Aligned_cols=92 Identities=18% Similarity=0.124 Sum_probs=56.5
Q ss_pred CeEEEeCCC-CchHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCC----CCCCCCeeEEEecCccc
Q 006834 224 RTAVDTGCG-VASWGAYLLKR-DILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRL----PYPARAFDMAHCSGCLI 297 (629)
Q Consensus 224 ~~VLDIGCG-tG~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~L----p~pd~sFDlV~~s~~L~ 297 (629)
.+||-+|+| .|..+..+++. |... +..++.+++..+.+++.+... +...+.... ....+.+|+|+....
T Consensus 161 ~~vlI~g~g~vg~~~~~la~~~G~~~--v~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~vd~v~~~~~-- 235 (334)
T cd08234 161 DSVLVFGAGPIGLLLAQLLKLNGASR--VTVAEPNEEKLELAKKLGATE-TVDPSREDPEAQKEDNPYGFDVVIEATG-- 235 (334)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcE--EEEECCCHHHHHHHHHhCCeE-EecCCCCCHHHHHHhcCCCCcEEEECCC--
Confidence 388888865 35555556554 4431 344578888888887776541 211111110 113456999985321
Q ss_pred ccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 298 PWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 298 h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
....+.++.+.|+++|.++..+.
T Consensus 236 -----~~~~~~~~~~~l~~~G~~v~~g~ 258 (334)
T cd08234 236 -----VPKTLEQAIEYARRGGTVLVFGV 258 (334)
T ss_pred -----ChHHHHHHHHHHhcCCEEEEEec
Confidence 13567888999999999988753
No 493
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=73.26 E-value=25 Score=40.22 Aligned_cols=43 Identities=16% Similarity=0.032 Sum_probs=28.5
Q ss_pred CeeEEEeecccchhHHhhhhCCC-------eEEEEecCCCCCCCchHHHH
Q 006834 479 RYRNVMDMNAYLGGFAAAMSKYP-------VWVMNVVPFHSNPDTLGAIY 521 (629)
Q Consensus 479 ~~R~vlD~~~g~Ggfaa~l~~~~-------v~~mnv~~~~~~~~~l~~~~ 521 (629)
...+|+|-+||.|+|.+++.++- -.-.|+...|-.+..+..+.
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~ 80 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAK 80 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHH
Confidence 34579999999999998886531 12356666666544554443
No 494
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=72.89 E-value=3.3 Score=44.02 Aligned_cols=66 Identities=12% Similarity=0.242 Sum_probs=40.8
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc---cceeccccccCCCCC-ccccee
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL---IGTYQDWCEAFSTYP-RTYDLI 546 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl---i~~~~~~~e~f~~yp-~t~Dl~ 546 (629)
+..+. +|||+|||.|.+..+|++... .|+.+|..+++++.+.++ |+ +.+++ +.+..++ ..||++
T Consensus 34 ~~~~~--~VLEIG~G~G~LT~~Ll~~~~---~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~---~Dal~~~~~~~d~V 105 (294)
T PTZ00338 34 IKPTD--TVLEIGPGTGNLTEKLLQLAK---KVIAIEIDPRMVAELKKRFQNSPLASKLEVIE---GDALKTEFPYFDVC 105 (294)
T ss_pred CCCcC--EEEEecCchHHHHHHHHHhCC---cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEE---CCHhhhcccccCEE
Confidence 34443 599999999999999987643 345555555677766543 32 33444 3333333 457776
Q ss_pred ec
Q 006834 547 HA 548 (629)
Q Consensus 547 H~ 548 (629)
-+
T Consensus 106 va 107 (294)
T PTZ00338 106 VA 107 (294)
T ss_pred Ee
Confidence 65
No 495
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=72.80 E-value=14 Score=41.49 Aligned_cols=102 Identities=20% Similarity=0.216 Sum_probs=63.4
Q ss_pred CCeEEEeCCCCc--hHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc--C---CCeEE---EEecCCCCCCC-CCCeeEEE
Q 006834 223 IRTAVDTGCGVA--SWGAYLLKRDILTMSFARRDTHEAQVQFALER--G---VPAMI---GVISSKRLPYP-ARAFDMAH 291 (629)
Q Consensus 223 ~~~VLDIGCGtG--~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er--g---~~~~~---~v~d~~~Lp~p-d~sFDlV~ 291 (629)
+..++|+|.|.| .+++.++-++- .-.+..+|.+.+|....... + ....+ .+.--..+|.. .+.||+|+
T Consensus 201 pd~~~dfgsg~~~~~~a~~~lwr~t-~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi 279 (491)
T KOG2539|consen 201 PDLLRDFGSGAGNGGWAAVLLWRQT-KREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVI 279 (491)
T ss_pred hHHHHHHHhhcccchhhhhhhcccc-cceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEE
Confidence 457888988765 45555554441 22456789999998887642 1 00011 12223456654 45699999
Q ss_pred ecCcccccccCH--HHHHHH-HHhcccCCcEEEEEeC
Q 006834 292 CSGCLIPWYMYD--GLYLLE-VDRVLRPGGYWILSGP 325 (629)
Q Consensus 292 ~s~~L~h~~~d~--~~~L~e-l~RvLKPGG~liis~P 325 (629)
|++.+++....- ....++ ..+..++||++++..+
T Consensus 280 ~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~ 316 (491)
T KOG2539|consen 280 CAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEK 316 (491)
T ss_pred eeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEec
Confidence 999998877332 233344 4557899999999843
No 496
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=72.72 E-value=16 Score=39.11 Aligned_cols=90 Identities=18% Similarity=0.065 Sum_probs=54.7
Q ss_pred CCeEEEeCCC-CchHHHHHHHc--CCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCCCeeEEEecCccccc
Q 006834 223 IRTAVDTGCG-VASWGAYLLKR--DILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCSGCLIPW 299 (629)
Q Consensus 223 ~~~VLDIGCG-tG~~a~~La~~--g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~ 299 (629)
+.+||=+||| .|.++..++++ +.. .++.+|.+++-++.|++.+. .... + .+. ....+|+|+-.-.- .
T Consensus 164 g~~VlV~G~G~vGl~~~~~a~~~~g~~--~vi~~~~~~~k~~~a~~~~~--~~~~-~--~~~-~~~g~d~viD~~G~-~- 233 (341)
T cd08237 164 RNVIGVWGDGNLGYITALLLKQIYPES--KLVVFGKHQEKLDLFSFADE--TYLI-D--DIP-EDLAVDHAFECVGG-R- 233 (341)
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCCC--cEEEEeCcHhHHHHHhhcCc--eeeh-h--hhh-hccCCcEEEECCCC-C-
Confidence 3489999987 45566666653 322 34556888888888876332 1111 1 111 11248998842221 0
Q ss_pred ccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 300 YMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 300 ~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
.....+.+..++|++||.+++.+
T Consensus 234 --~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 234 --GSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred --ccHHHHHHHHHhCcCCcEEEEEe
Confidence 02357888999999999999875
No 497
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=72.71 E-value=19 Score=37.82 Aligned_cols=93 Identities=19% Similarity=0.224 Sum_probs=56.8
Q ss_pred CCeEEEeCCCC-chHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHcCCCeEEEEec--CCCCCCCCCCeeEEEecCcccc
Q 006834 223 IRTAVDTGCGV-ASWGAYLLKR-DILTMSFARRDTHEAQVQFALERGVPAMIGVIS--SKRLPYPARAFDMAHCSGCLIP 298 (629)
Q Consensus 223 ~~~VLDIGCGt-G~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d--~~~Lp~pd~sFDlV~~s~~L~h 298 (629)
+.+||-.|||. |..+..+++. |.. .++.++.++...+.+++.+....+...+ ...+....+.+|+|+....
T Consensus 166 ~~~VLI~g~g~vG~~~~~lak~~G~~--~v~~~~~s~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~vd~vld~~g--- 240 (339)
T cd08232 166 GKRVLVTGAGPIGALVVAAARRAGAA--EIVATDLADAPLAVARAMGADETVNLARDPLAAYAADKGDFDVVFEASG--- 240 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCc--EEEEECCCHHHHHHHHHcCCCEEEcCCchhhhhhhccCCCccEEEECCC---
Confidence 34788888874 6666666654 442 3455688888888777766432221100 1112212245899985332
Q ss_pred cccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 299 WYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 299 ~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
....+.++.+.|+++|.++..+
T Consensus 241 ----~~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 241 ----APAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred ----CHHHHHHHHHHHhcCCEEEEEe
Confidence 1346788899999999998765
No 498
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=72.68 E-value=20 Score=38.43 Aligned_cols=93 Identities=13% Similarity=0.064 Sum_probs=56.8
Q ss_pred CeEEEeCCC-CchHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCC---CC-C-CCCCCeeEEEecCcc
Q 006834 224 RTAVDTGCG-VASWGAYLLKR-DILTMSFARRDTHEAQVQFALERGVPAMIGVISSK---RL-P-YPARAFDMAHCSGCL 296 (629)
Q Consensus 224 ~~VLDIGCG-tG~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~---~L-p-~pd~sFDlV~~s~~L 296 (629)
.+||=.|+| .|..+..+++. |.. .++.+|.+++..+++++.+....+...+.. .+ . .....+|+|+-.-.
T Consensus 178 ~~VlV~G~g~vG~~a~~~ak~~G~~--~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid~~g- 254 (358)
T TIGR03451 178 DSVAVIGCGGVGDAAIAGAALAGAS--KIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVIDAVG- 254 (358)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCC--eEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEEECCC-
Confidence 388888876 35556666654 442 245669999999999887753222111100 00 0 12245898884221
Q ss_pred cccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 297 IPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 297 ~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
. ...+.+..+.|++||.+++.+.
T Consensus 255 -----~-~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 255 -----R-PETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred -----C-HHHHHHHHHHhccCCEEEEECC
Confidence 1 2457778889999999998863
No 499
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=71.51 E-value=19 Score=38.79 Aligned_cols=91 Identities=18% Similarity=0.142 Sum_probs=55.9
Q ss_pred eEEEeCCC-CchHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecC---CCC-CCCCCCeeEEEecCcccc
Q 006834 225 TAVDTGCG-VASWGAYLLKR-DILTMSFARRDTHEAQVQFALERGVPAMIGVISS---KRL-PYPARAFDMAHCSGCLIP 298 (629)
Q Consensus 225 ~VLDIGCG-tG~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~---~~L-p~pd~sFDlV~~s~~L~h 298 (629)
+||=.|+| .|.++..+++. |.. .++.+|.+++.++.+++.|....+...+. ..+ ....+.+|+|+-.-.
T Consensus 194 ~VlV~G~G~vG~~a~~lak~~G~~--~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~G--- 268 (371)
T cd08281 194 SVAVVGLGGVGLSALLGAVAAGAS--QVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMAG--- 268 (371)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCC--cEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECCC---
Confidence 77778876 35666666654 442 24556999999999988775432221110 000 011236899884321
Q ss_pred cccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 299 WYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 299 ~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
....+....+.|++||.+++.+
T Consensus 269 ----~~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 269 ----SVPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred ----ChHHHHHHHHHHhcCCEEEEEc
Confidence 1246778889999999999875
No 500
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=71.26 E-value=4.7 Score=44.41 Aligned_cols=90 Identities=21% Similarity=0.224 Sum_probs=51.6
Q ss_pred EEEeecccchhHHhhhhC-CCeEEEEecCCCCCCCchHHHH---hh-cc--cceec-cccccCCCCCcccceeecccccc
Q 006834 482 NVMDMNAYLGGFAAAMSK-YPVWVMNVVPFHSNPDTLGAIY---ER-GL--IGTYQ-DWCEAFSTYPRTYDLIHASGVFS 553 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~-~~v~~mnv~~~~~~~~~l~~~~---er-gl--i~~~~-~~~e~f~~yp~t~Dl~H~~~~fs 553 (629)
+|||+.||+|.++..++. .++ -.|+.+|..++.+..+. +. |+ +-+++ |.-+-++. ...||+|..+- |
T Consensus 60 ~vLDl~aGsG~~~l~~a~~~~~--~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~-~~~fD~V~lDP-~- 134 (382)
T PRK04338 60 SVLDALSASGIRGIRYALETGV--EKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE-ERKFDVVDIDP-F- 134 (382)
T ss_pred EEEECCCcccHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh-cCCCCEEEECC-C-
Confidence 599999999999999864 342 12333344333443332 22 33 11232 22111211 45699999854 3
Q ss_pred ccCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006834 554 IYQDRCDITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 554 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
++. ..+|-..-+.+||||.+.++
T Consensus 135 ----Gs~-~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 ----GSP-APFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred ----CCc-HHHHHHHHHHhcCCCEEEEE
Confidence 222 34555546778999999997
Done!